-- dump date 20120504_151248 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 362948000001 SEQ_END SEQ_END NC_006529.1 20417 20417 DR NC_006529.1; contig end 20417..20417 Lactobacillus salivarius UCC118 362948000002 SEQ_END SEQ_END NC_006530.1 44013 44013 DR NC_006530.1; contig end 44013..44013 Lactobacillus salivarius UCC118 362948000003 SEQ_END SEQ_END NC_007929.1 1827111 1827111 DR NC_007929.1; contig end 1827111..1827111 Lactobacillus salivarius UCC118 362948000004 SEQ_END SEQ_END NC_007930.1 242436 242436 DR NC_007930.1; contig end 242436..242436 Lactobacillus salivarius UCC118 YP_163738.1 CDS pSF118-20_01 NC_006529.1 67 2127 R ORF1; putative nickase complement(67..2127) Lactobacillus salivarius UCC118 3190536 YP_163739.1 CDS pSF118-20_02 NC_006529.1 2399 2611 D ORF2; hypothetical protein 2399..2611 Lactobacillus salivarius UCC118 3190530 YP_163740.1 CDS pSF118-20_03 NC_006529.1 2628 2906 D ORF3; hypothetical protein 2628..2906 Lactobacillus salivarius UCC118 3190528 YP_163741.1 CDS pSF118-20_04 NC_006529.1 3038 3787 R ORF4; hypothetical protein complement(3038..3787) Lactobacillus salivarius UCC118 3190527 YP_163742.1 CDS pSF118-20_05 NC_006529.1 3837 4028 R ORF5; hypothetical protein complement(3837..4028) Lactobacillus salivarius UCC118 3190533 YP_163743.1 CDS repA NC_006529.1 4179 5282 R RepA; putative replication initiation protein complement(4179..5282) Lactobacillus salivarius UCC118 3190529 YP_163744.1 CDS pSF118-20_07 NC_006529.1 5871 6122 R ORF7; hypothetical protein complement(5871..6122) Lactobacillus salivarius UCC118 3190520 YP_163745.1 CDS pSF118-20_08 NC_006529.1 6126 6935 R ORF8; putative plasmid partition protein complement(6126..6935) Lactobacillus salivarius UCC118 3190532 YP_163746.1 CDS pSF118-20_09 NC_006529.1 7011 7583 R ORF9; putative resolvase complement(7011..7583) Lactobacillus salivarius UCC118 3190525 YP_163747.1 CDS pSF118-20_10 NC_006529.1 8112 9443 D ORF10; putative mercury(II) reductase 8112..9443 Lactobacillus salivarius UCC118 3190522 YP_163748.1 CDS pSF118-20_11 NC_006529.1 9714 10343 D ORF11; hypothetical protein 9714..10343 Lactobacillus salivarius UCC118 3190523 YP_163749.1 CDS pSF118-20_12 NC_006529.1 10872 11432 D ORF12; hypothetical protein 10872..11432 Lactobacillus salivarius UCC118 3190545 YP_163750.1 CDS pSF118-20_13 NC_006529.1 11444 11629 D ORF13; hypothetical protein 11444..11629 Lactobacillus salivarius UCC118 3190546 YP_163751.1 CDS gls14 NC_006529.1 11657 12199 D Gls14; similar to Gls24 from Enterococcus faecalis; putative general stress-like protein 11657..12199 Lactobacillus salivarius UCC118 3190531 YP_163752.1 CDS pSF118-20_15 NC_006529.1 12214 12465 D Gls15; similar to GlsB from Enterococcus faecalis; putative stress-like protein 12214..12465 Lactobacillus salivarius UCC118 3190526 YP_163753.1 CDS pSF118-20_16 NC_006529.1 12477 12617 D ORF16; hypothetical protein 12477..12617 Lactobacillus salivarius UCC118 3190544 YP_163754.1 CDS pSF118-20_17 NC_006529.1 12815 13030 D ORF17; hypothetical protein 12815..13030 Lactobacillus salivarius UCC118 3190543 YP_163755.1 CDS pSF118-20_18 NC_006529.1 13518 14090 R ORF18; hypothetical protein complement(13518..14090) Lactobacillus salivarius UCC118 3190542 YP_163756.1 CDS pSF118-20_19 NC_006529.1 14418 15797 R ORF19; putative transposase complement(14418..15797) Lactobacillus salivarius UCC118 3190541 YP_163757.1 CDS pSF118-20_20 NC_006529.1 16058 16318 D ORF20; putative UV-resistance-like protein 16058..16318 Lactobacillus salivarius UCC118 3190524 YP_163758.1 CDS pSF118-20_21 NC_006529.1 16455 16766 D ORF21; hypothetical protein 16455..16766 Lactobacillus salivarius UCC118 3190521 YP_163759.1 CDS pSF118-20_22 NC_006529.1 16759 17211 D ORF22; hypothetical protein 16759..17211 Lactobacillus salivarius UCC118 3190534 YP_163760.1 CDS pSF118-20_23 NC_006529.1 17419 17595 D ORF23; hypothetical protein 17419..17595 Lactobacillus salivarius UCC118 3190540 YP_163761.1 CDS pSF118-20_24 NC_006529.1 17833 18090 R ORF24; hypothetical protein complement(17833..18090) Lactobacillus salivarius UCC118 3190539 YP_163762.1 CDS pSF118-20_25 NC_006529.1 18177 18440 D ORF25; probable suppressor of the inhibitory function of PemK; putative PemI-like protein 18177..18440 Lactobacillus salivarius UCC118 3190538 YP_163763.1 CDS pSF118-20_26 NC_006529.1 18434 18778 D ORF26; probable growth inhibitor; putative PemK-like protein 18434..18778 Lactobacillus salivarius UCC118 3190537 YP_163764.1 CDS pSF118-20_27 NC_006529.1 19002 20222 D ORF27; putative transposase 19002..20222 Lactobacillus salivarius UCC118 3190535 YP_163765.1 CDS LSL_1987 NC_006530.1 43479 905 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(join(43479..44013,1..905)) Lactobacillus salivarius UCC118 3190519 YP_163766.1 CDS LSL_1988 NC_006530.1 1021 1725 R MutT/Nudix-like protein complement(1021..1725) Lactobacillus salivarius UCC118 3190568 YP_163767.1 CDS LSL_1989 NC_006530.1 1948 2256 R TetR family transcriptional regulator complement(1948..2256) Lactobacillus salivarius UCC118 3190567 YP_163769.1 CDS LSL_1991 NC_006530.1 3226 4143 D hypothetical protein 3226..4143 Lactobacillus salivarius UCC118 3190565 YP_163770.1 CDS LSL_1992 NC_006530.1 4156 4659 D hypothetical protein 4156..4659 Lactobacillus salivarius UCC118 3190581 YP_163772.1 CDS LSL_1994 NC_006530.1 5876 6175 D antitoxin of toxin-antitoxin stability system 5876..6175 Lactobacillus salivarius UCC118 3190563 YP_163773.1 CDS LSL_1995 NC_006530.1 6172 6507 D toxin of toxin-antitoxin stability system 6172..6507 Lactobacillus salivarius UCC118 3190562 YP_163774.1 CDS LSL_1996 NC_006530.1 6564 6872 R hypothetical protein complement(6564..6872) Lactobacillus salivarius UCC118 3190561 YP_163775.1 CDS LSL_1997 NC_006530.1 6874 7161 R hypothetical protein complement(6874..7161) Lactobacillus salivarius UCC118 3190560 YP_163776.1 CDS LSL_1998 NC_006530.1 7288 8073 D putative plasmid partition protein 7288..8073 Lactobacillus salivarius UCC118 3190559 YP_163777.1 CDS LSL_1999 NC_006530.1 8152 8355 D hypothetical protein 8152..8355 Lactobacillus salivarius UCC118 3190578 YP_163778.1 CDS repA NC_006530.1 9165 10259 D RepA; plasmid replication initiation protein 9165..10259 Lactobacillus salivarius UCC118 3190571 YP_163779.1 CDS LSL_2001 NC_006530.1 10429 10626 D hypothetical protein 10429..10626 Lactobacillus salivarius UCC118 3190577 YP_163780.1 CDS LSL_2002 NC_006530.1 10677 11423 D hypothetical protein 10677..11423 Lactobacillus salivarius UCC118 3190558 YP_163781.1 CDS LSL_2003 NC_006530.1 11546 11824 R hypothetical protein complement(11546..11824) Lactobacillus salivarius UCC118 3190557 YP_163782.1 CDS LSL_2004 NC_006530.1 11847 12056 R hypothetical protein complement(11847..12056) Lactobacillus salivarius UCC118 3190576 YP_163783.1 CDS LSL_2005 NC_006530.1 12326 14386 D nickase 12326..14386 Lactobacillus salivarius UCC118 3190556 YP_163784.1 CDS LSL_2006 NC_006530.1 14823 15002 D hypothetical protein 14823..15002 Lactobacillus salivarius UCC118 3190555 YP_163785.1 CDS LSL_2007 NC_006530.1 15124 15330 R cinnamoyl ester hydrolase-like protein complement(15124..15330) Lactobacillus salivarius UCC118 3190554 YP_163786.1 CDS LSL_2008 NC_006530.1 15640 16662 D quinone oxidoreductase 15640..16662 Lactobacillus salivarius UCC118 3190553 YP_163787.1 CDS LSL_2009 NC_006530.1 16666 17346 D hypothetical protein 16666..17346 Lactobacillus salivarius UCC118 3190552 YP_163788.1 CDS LSL_2010 NC_006530.1 17359 17679 R putative transposase complement(17359..17679) Lactobacillus salivarius UCC118 3190575 YP_163789.1 CDS LSL_2011 NC_006530.1 18132 18998 D ABC transporter ATP-binding subunit 18132..18998 Lactobacillus salivarius UCC118 3190572 YP_163790.1 CDS LSL_2012 NC_006530.1 19000 19860 D membrane permease 19000..19860 Lactobacillus salivarius UCC118 3190551 YP_163791.1 CDS LSL_2013 NC_006530.1 19866 20318 D putative transcriptional regulator 19866..20318 Lactobacillus salivarius UCC118 3190550 YP_163792.1 CDS LSL_2014 NC_006530.1 20332 20736 D hypothetical protein 20332..20736 Lactobacillus salivarius UCC118 3190549 YP_163795.1 CDS LSL_2017 NC_006530.1 22472 22597 D hypothetical protein 22472..22597 Lactobacillus salivarius UCC118 3190516 YP_163796.1 CDS LSL_2018 NC_006530.1 22721 23173 R hypothetical protein complement(22721..23173) Lactobacillus salivarius UCC118 3190585 YP_163797.1 CDS LSL_2019 NC_006530.1 23166 23393 R hypothetical protein complement(23166..23393) Lactobacillus salivarius UCC118 3190547 YP_163798.1 CDS LSL_2020 NC_006530.1 23923 25272 D pyridine nucleotide-disulphide oxidoreductase family protein 23923..25272 Lactobacillus salivarius UCC118 3190508 YP_163799.1 CDS LSL_2021 NC_006530.1 28418 29020 D putative membrane associated transport subunit 28418..29020 Lactobacillus salivarius UCC118 3190574 YP_163800.1 CDS LSL_2022 NC_006530.1 29020 29814 D transport protein CbiQ 29020..29814 Lactobacillus salivarius UCC118 3190584 YP_163801.1 CDS LSL_2023 NC_006530.1 29787 30344 D cobalt transport protein CbiQ 29787..30344 Lactobacillus salivarius UCC118 3190583 YP_163802.1 CDS LSL_2024 NC_006530.1 30603 31418 D cobalt transport ATP-binding protein CbiO 30603..31418 Lactobacillus salivarius UCC118 3190515 YP_163803.1 CDS LSL_2025 NC_006530.1 31791 31949 D hypothetical protein 31791..31949 Lactobacillus salivarius UCC118 3190514 YP_163804.1 CDS LSL_2026 NC_006530.1 32695 34281 D ABC transporter permease and substrate binding protein; glycine betaine transporter 32695..34281 Lactobacillus salivarius UCC118 3190570 YP_163805.1 CDS LSL_2027 NC_006530.1 34281 35252 D ATP-binding protein; glycine betaine transporter 34281..35252 Lactobacillus salivarius UCC118 3190569 YP_163806.1 CDS LSL_2028 NC_006530.1 35348 36679 D glutathione reductase 35348..36679 Lactobacillus salivarius UCC118 3190513 YP_163807.1 CDS LSL_2029 NC_006530.1 37363 37947 D resolvase 37363..37947 Lactobacillus salivarius UCC118 3190573 YP_163808.1 CDS LSL_2030 NC_006530.1 38072 38395 D hypothetical protein 38072..38395 Lactobacillus salivarius UCC118 3190579 YP_163809.1 CDS LSL_2031 NC_006530.1 38271 39107 R hypothetical protein complement(38271..39107) Lactobacillus salivarius UCC118 3190580 YP_163810.1 CDS LSL_2032 NC_006530.1 39222 39392 R similar to Escherichia coli DinJ damage inducible protein; DinJ damage inducible protein-like protein complement(39222..39392) Lactobacillus salivarius UCC118 3190512 YP_163811.1 CDS LSL_2033 NC_006530.1 39582 39869 D hypothetical protein 39582..39869 Lactobacillus salivarius UCC118 3190510 YP_163812.1 CDS LSL_2034 NC_006530.1 40441 41274 R hypothetical protein complement(40441..41274) Lactobacillus salivarius UCC118 3190509 YP_163813.1 CDS LSL_2035 NC_006530.1 41276 41566 R hypothetical protein complement(41276..41566) Lactobacillus salivarius UCC118 3190548 YP_163814.1 CDS LSL_2036 NC_006530.1 41568 41816 R hypothetical protein complement(41568..41816) Lactobacillus salivarius UCC118 3190582 YP_163815.1 CDS LSL_2037 NC_006530.1 41977 42714 R hypothetical protein complement(41977..42714) Lactobacillus salivarius UCC118 3190518 YP_534907.1 CDS dnaA NC_007929.1 1 1365 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1..1365 Lactobacillus salivarius UCC118 3978264 YP_534908.1 CDS dnaN NC_007929.1 1532 2671 D COG0592 [L] DNA polymerase sliding clamp subunit (PCNA homolog); DNA polymerase III, beta chain 1532..2671 Lactobacillus salivarius UCC118 3978265 YP_534909.1 CDS LSL_0003 NC_007929.1 3088 3309 D COG0011 [S] Uncharacterized conserved protein; hypothetical protein 3088..3309 Lactobacillus salivarius UCC118 3978266 YP_534910.1 CDS recF NC_007929.1 3309 4448 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3309..4448 Lactobacillus salivarius UCC118 3978267 YP_534911.1 CDS gyrB NC_007929.1 4451 6409 D COG0187 [L] type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; DNA gyrase subunit B 4451..6409 Lactobacillus salivarius UCC118 3978246 YP_534912.1 CDS gyrA NC_007929.1 6446 8998 D COG0188 [L] type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit; DNA gyrase subunit A 6446..8998 Lactobacillus salivarius UCC118 3978247 YP_534913.1 CDS rpsF NC_007929.1 9217 9507 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 9217..9507 Lactobacillus salivarius UCC118 3978248 YP_534914.1 CDS ssb NC_007929.1 9548 10099 D COG0629 [L] Single-stranded DNA-binding protein; single-strand DNA binding protein 9548..10099 Lactobacillus salivarius UCC118 3978249 YP_534915.1 CDS rpsR NC_007929.1 10121 10357 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 10121..10357 Lactobacillus salivarius UCC118 3978250 YP_534916.1 CDS mmsB NC_007929.1 10418 11281 R COG2084 [I] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; 3-hydroxyisobutyrate dehydrogenase complement(10418..11281) Lactobacillus salivarius UCC118 3978251 YP_534917.1 CDS rfaG NC_007929.1 11427 12440 D COG0463 [M] Glycosyltransferases involved in cell wall biogenesis; glycosyltransferase 11427..12440 Lactobacillus salivarius UCC118 3978252 YP_534918.1 CDS asnB NC_007929.1 13691 15613 D COG0367 [E] Asparagine synthase (glutamine-hydrolyzing); asparagine synthetase 13691..15613 Lactobacillus salivarius UCC118 3978254 YP_534919.1 CDS mscL NC_007929.1 16466 16843 D forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 16466..16843 Lactobacillus salivarius UCC118 3978256 YP_534920.1 CDS LSL_0014 NC_007929.1 16903 18789 R COG0028 [EH] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; pyruvate oxidase complement(16903..18789) Lactobacillus salivarius UCC118 3978257 YP_534921.1 CDS LSL_0015 NC_007929.1 19313 19639 D hypothetical protein 19313..19639 Lactobacillus salivarius UCC118 3978258 YP_534922.1 CDS murE NC_007929.1 19783 21315 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 19783..21315 Lactobacillus salivarius UCC118 3978259 YP_534923.1 CDS LSL_0017 NC_007929.1 21315 22565 D COG3919 [R] Predicted ATP-grasp enzyme; hypothetical protein 21315..22565 Lactobacillus salivarius UCC118 3978260 YP_534924.1 CDS racX NC_007929.1 22575 23288 D COG1794 [M] Aspartate racemase; aspartate racemase 22575..23288 Lactobacillus salivarius UCC118 3978261 YP_534925.1 CDS LSL_0019 NC_007929.1 23323 24546 R COG0477 [GEPR] Permeases of the major facilitator superfamily; multidrug resistance efflux pump complement(23323..24546) Lactobacillus salivarius UCC118 3978262 YP_534926.1 CDS LSL_0020 NC_007929.1 24679 25245 D COG0583 [K] Transcriptional regulator; TetR family transcriptional regulator 24679..25245 Lactobacillus salivarius UCC118 3978263 YP_534927.1 CDS LSL_0021 NC_007929.1 25365 26231 D COG4975 [G] glucose uptake permease; glucose uptake protein 25365..26231 Lactobacillus salivarius UCC118 3978228 YP_534928.1 CDS LSL_0022 NC_007929.1 26461 27807 D COG0011 [S] Uncharacterized conserved protein; hypothetical protein 26461..27807 Lactobacillus salivarius UCC118 3978229 YP_534929.1 CDS LSL_0023 NC_007929.1 27822 28382 D hypothetical protein 27822..28382 Lactobacillus salivarius UCC118 3978230 YP_534930.1 CDS LSL_0024 NC_007929.1 28581 29495 D COG0697 [GER] Permeases of the drug/metabolite transporter (DMT) superfamily; drug/metabolite exporter family protein 28581..29495 Lactobacillus salivarius UCC118 3978231 YP_534931.1 CDS LSL_0025 NC_007929.1 29664 31466 R COG1164 [E] Oligoendopeptidase F; oligoendopeptidase F complement(29664..31466) Lactobacillus salivarius UCC118 3978232 YP_534932.1 CDS cysK NC_007929.1 31822 32739 D COG0031 [E] Cysteine synthase; cysteine synthase 31822..32739 Lactobacillus salivarius UCC118 3978233 YP_534933.1 CDS metC NC_007929.1 32755 33897 D COG0626 [E] Cystathionine beta-lyases/cystathionine gamma-synthases; cystathionine beta-lyase / cystathionine gamma-lyase 32755..33897 Lactobacillus salivarius UCC118 3978234 YP_534934.1 CDS gldA NC_007929.1 34052 35143 D COG0371 [C] Glycerol dehydrogenase and related enzymes; glycerol dehydrogenase 34052..35143 Lactobacillus salivarius UCC118 3978235 YP_534935.1 CDS LSL_0029 NC_007929.1 35246 35680 D this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 35246..35680 Lactobacillus salivarius UCC118 3978236 YP_534936.1 CDS LSL_0030 NC_007929.1 35796 36092 D DNA-damage-inducible protein J 35796..36092 Lactobacillus salivarius UCC118 3978237 YP_534937.1 CDS LSL_0031 NC_007929.1 38074 38523 D COG0583 [K] Transcriptional regulator; MarR family transcriptional regulator 38074..38523 Lactobacillus salivarius UCC118 3978240 YP_534938.1 CDS LSL_0032 NC_007929.1 38535 40268 D COG1132 [V] ABC-type multidrug transport system, ATPase and permease components; multidrug ABC transporter permease/ATP-binding protein 38535..40268 Lactobacillus salivarius UCC118 3978241 YP_534939.1 CDS LSL_0033 NC_007929.1 40261 42042 D COG1132 [V] ABC-type multidrug transport system, ATPase and permease components; multidrug/protein/lipid ABC transporter family ATP-binding and permease 40261..42042 Lactobacillus salivarius UCC118 3978242 YP_534940.1 CDS LSL_0034 NC_007929.1 42151 42966 D COG0561 [R] Predicted hydrolases of the HAD superfamily; HAD superfamily hydrolase 42151..42966 Lactobacillus salivarius UCC118 3978243 YP_534941.1 CDS LSL_0035 NC_007929.1 43139 43849 D COG0745 [TK] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two-component response regulator 43139..43849 Lactobacillus salivarius UCC118 3978244 YP_534942.1 CDS LSL_0036 NC_007929.1 43878 45743 D COG0642 [T] signal transduction histidine kinase; two-component sensor kinase yycG 43878..45743 Lactobacillus salivarius UCC118 3978245 YP_534943.1 CDS LSL_0037 NC_007929.1 45733 47070 D COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 45733..47070 Lactobacillus salivarius UCC118 3978211 YP_534944.1 CDS LSL_0038 NC_007929.1 47082 47882 D COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 47082..47882 Lactobacillus salivarius UCC118 3978212 YP_534945.1 CDS phnP NC_007929.1 48364 49167 D COG1235 [R] Metal-dependent hydrolases of the beta-lactamase superfamily I; zinc-dependent hydrolase 48364..49167 Lactobacillus salivarius UCC118 3978214 YP_534946.1 CDS degP NC_007929.1 49266 50573 D COG0265 [O] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; endopeptidase 49266..50573 Lactobacillus salivarius UCC118 3978215 YP_534947.1 CDS LSL_0043 NC_007929.1 50970 51449 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 50970..51449 Lactobacillus salivarius UCC118 3978216 YP_534948.1 CDS LSL_0044 NC_007929.1 51615 52262 D COG0702 [MG] Predicted nucleoside-diphosphate-sugar epimerases; oxidoreductase 51615..52262 Lactobacillus salivarius UCC118 3978217 YP_534949.1 CDS LSL_0045 NC_007929.1 52274 52666 D COG1522 [K] Transcriptional regulators; hypothetical protein 52274..52666 Lactobacillus salivarius UCC118 3978218 YP_534950.1 CDS LSL_0046 NC_007929.1 52659 53507 D COG1028 [IQR] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Short chain dehydrogenase 52659..53507 Lactobacillus salivarius UCC118 3978219 YP_534951.1 CDS LSL_0047 NC_007929.1 53643 54395 D hypothetical protein 53643..54395 Lactobacillus salivarius UCC118 3978220 YP_534952.1 CDS glpT NC_007929.1 54734 56122 R COG2271 [G] Sugar phosphate permease; glycerol-3-phosphate transporter complement(54734..56122) Lactobacillus salivarius UCC118 3978221 YP_534953.1 CDS LSL_0049 NC_007929.1 56327 56845 D COG0675 [L] Transposase and inactivated derivatives; IS1223 family transposase 56327..56845 Lactobacillus salivarius UCC118 3978222 YP_534954.1 CDS LSL_0050 NC_007929.1 57833 58300 R COG0675 [L] Transposase and inactivated derivatives; IS200 family transposase complement(57833..58300) Lactobacillus salivarius UCC118 3978224 YP_534955.1 CDS LSL_0051 NC_007929.1 60583 60777 R hypothetical protein complement(60583..60777) Lactobacillus salivarius UCC118 3978226 YP_534956.1 CDS LSL_0052 NC_007929.1 60786 62045 D COG0534 [V] Na+-driven multidrug efflux pump; Na+ driven multidrug efflux pump 60786..62045 Lactobacillus salivarius UCC118 3978227 YP_534957.1 CDS LSL_0053 NC_007929.1 62094 63575 R COG0488 [R] ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter, ATP-binding protein complement(62094..63575) Lactobacillus salivarius UCC118 3978194 YP_534958.1 CDS LSL_0054 NC_007929.1 63881 64300 D hypothetical protein 63881..64300 Lactobacillus salivarius UCC118 3978195 YP_534959.1 CDS ppiB NC_007929.1 64386 64970 D COG0652 [O] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; peptidyl-prolyl cis-trans isomerase 64386..64970 Lactobacillus salivarius UCC118 3978196 YP_534960.1 CDS LSL_0056 NC_007929.1 65121 65840 D COG2071 [R] Predicted glutamine amidotransferases; glutamine amidotransferase, class I 65121..65840 Lactobacillus salivarius UCC118 3978197 YP_534961.1 CDS gshA NC_007929.1 65893 67251 R COG2918 [H] Gamma-glutamylcysteine synthetase; glutamate--cysteine ligase complement(65893..67251) Lactobacillus salivarius UCC118 3978198 YP_534962.1 CDS LSL_0058 NC_007929.1 67454 67684 D hypothetical protein 67454..67684 Lactobacillus salivarius UCC118 3978199 YP_534963.1 CDS clpL NC_007929.1 67810 69918 D COG0542 [O] ATPases with chaperone activity, ATP-binding subunit; ATP-dependent Clp protease ATP-binding subunit 67810..69918 Lactobacillus salivarius UCC118 3978200 YP_534964.1 CDS LSL_0060 NC_007929.1 70130 70606 D COG0589 [T] Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein 70130..70606 Lactobacillus salivarius UCC118 3978201 YP_534965.1 CDS LSL_0061 NC_007929.1 70667 70843 R hypothetical protein complement(70667..70843) Lactobacillus salivarius UCC118 3978202 YP_534966.1 CDS glnP NC_007929.1 70946 72403 R COG0834 [ET] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; glutamine-binding protein / glutamine transport system permease complement(70946..72403) Lactobacillus salivarius UCC118 3978203 YP_534967.1 CDS ilvE NC_007929.1 72643 73677 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(72643..73677) Lactobacillus salivarius UCC118 3978204 YP_534968.1 CDS scrR NC_007929.1 79497 80489 R COG1522 [K] Transcriptional regulators; sucrose operon repressor complement(79497..80489) Lactobacillus salivarius UCC118 3978208 YP_534969.1 CDS scrB NC_007929.1 80508 81998 R COG1621 [G] beta-fructosidases (levanase/invertase); sucrose-6-phosphate hydrolase complement(80508..81998) Lactobacillus salivarius UCC118 3978209 YP_534970.1 CDS scrA NC_007929.1 82401 84335 D COG1263 [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; PTS system, sucrose-specific IIABC component 82401..84335 Lactobacillus salivarius UCC118 3978210 YP_534971.1 CDS amyB NC_007929.1 84450 86195 D COG0366 [G] Glycosidases; neopullulanase / cyclomaltodextrinase / maltogenic alpha-amylase 84450..86195 Lactobacillus salivarius UCC118 3978176 YP_534972.1 CDS ktrB NC_007929.1 86310 87698 D COG0168 [P] Trk-type K+ transport systems, membrane components; potassium uptake protein ktrB 86310..87698 Lactobacillus salivarius UCC118 3978177 YP_534973.1 CDS ktrA NC_007929.1 87718 88356 D COG0569 [P] K+ transport systems, NAD-binding component; potassium uptake protein 87718..88356 Lactobacillus salivarius UCC118 3978178 YP_534974.1 CDS LSL_0070 NC_007929.1 88433 89086 D COG2738 [R] Predicted Zn-dependent protease; Zn-dependent protease 88433..89086 Lactobacillus salivarius UCC118 3978179 YP_534975.1 CDS LSL_0071 NC_007929.1 89113 90129 D COG0463 [M] Glycosyltransferases involved in cell wall biogenesis; N-acetylglucosaminyltransferase 89113..90129 Lactobacillus salivarius UCC118 3978180 YP_534976.1 CDS LSL_0072 NC_007929.1 90207 90479 R hypothetical protein complement(90207..90479) Lactobacillus salivarius UCC118 3978181 YP_534977.1 CDS LSL_0073 NC_007929.1 90664 92457 D COG0344 [S] Predicted membrane protein; hypothetical protein 90664..92457 Lactobacillus salivarius UCC118 3978182 YP_534978.1 CDS LSL_0074 NC_007929.1 92594 93130 D COG0011 [S] Uncharacterized conserved protein; BioY protein 92594..93130 Lactobacillus salivarius UCC118 3978183 YP_534979.1 CDS dacC NC_007929.1 93373 94629 D COG1686 [M] D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine serine-type carboxypeptidase 93373..94629 Lactobacillus salivarius UCC118 3978184 YP_534980.1 CDS LSL_0076 NC_007929.1 94842 95618 D COG1349 [KG] Transcriptional regulators of sugar metabolism; DeoR family transcriptional regulator 94842..95618 Lactobacillus salivarius UCC118 3978185 YP_534981.1 CDS LSL_0077 NC_007929.1 97235 97936 R hypothetical protein complement(97235..97936) Lactobacillus salivarius UCC118 3978188 YP_534982.1 CDS LSL_0078 NC_007929.1 97936 99414 R COG0477 [GEPR] Permeases of the major facilitator superfamily; multidrug resistance protein B complement(97936..99414) Lactobacillus salivarius UCC118 3978189 YP_534983.1 CDS LSL_0079 NC_007929.1 99569 100015 D COG0583 [K] Transcriptional regulator; MerR family transcriptional regulator 99569..100015 Lactobacillus salivarius UCC118 3978190 YP_534984.1 CDS gloA NC_007929.1 100015 100395 D COG0346 [E] Lactoylglutathione lyase and related lyases; glyoxalase 100015..100395 Lactobacillus salivarius UCC118 3978191 YP_534985.1 CDS LSL_0081 NC_007929.1 100444 101130 R COG1811 [R] Uncharacterized membrane protein, possible Na+ channel or pump; hypothetical protein complement(100444..101130) Lactobacillus salivarius UCC118 3978192 YP_534986.1 CDS LSL_0082 NC_007929.1 101288 102583 R COG1653 [G] ABC-type sugar transport system, periplasmic component; sugar-binding protein complement(101288..102583) Lactobacillus salivarius UCC118 3978193 YP_534987.1 CDS LSL_0083 NC_007929.1 102593 103249 R COG2197 [TK] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; two-component response regulator complement(102593..103249) Lactobacillus salivarius UCC118 3978158 YP_534988.1 CDS baeS NC_007929.1 103265 104566 R COG0642 [T] signal transduction histidine kinase; two component system histidine kinase complement(103265..104566) Lactobacillus salivarius UCC118 3978159 YP_534989.1 CDS rbsB NC_007929.1 104563 105555 R COG1653 [G] ABC-type sugar transport system, periplasmic component; D-ribose-binding protein complement(104563..105555) Lactobacillus salivarius UCC118 3978160 YP_534990.1 CDS manX NC_007929.1 105826 106824 D COG2893 [G] Phosphotransferase system, mannose/fructose-specific component IIA; PTS system, mannose-specific IIAB component 105826..106824 Lactobacillus salivarius UCC118 3978161 YP_534991.1 CDS LSL_0087 NC_007929.1 106843 107652 D COG3715 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; PTS system, mannose-specific IIC component 106843..107652 Lactobacillus salivarius UCC118 3978162 YP_534992.1 CDS LSL_0088 NC_007929.1 107671 108585 D COG3716 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; PTS system, mannose-specific IID component 107671..108585 Lactobacillus salivarius UCC118 3978163 YP_534993.1 CDS LSL_0089 NC_007929.1 108607 108996 D COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 108607..108996 Lactobacillus salivarius UCC118 3978164 YP_534994.1 CDS LSL_0090 NC_007929.1 109121 110671 R COG1388 [M] FOG: LysM repeat; hypothetical protein complement(109121..110671) Lactobacillus salivarius UCC118 3978165 YP_534995.1 CDS serC NC_007929.1 111092 112183 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 111092..112183 Lactobacillus salivarius UCC118 3978166 YP_534996.1 CDS serA NC_007929.1 112191 113375 D COG0111 [HE] Phosphoglycerate dehydrogenase and related dehydrogenases; D-3-phosphoglycerate dehydrogenase 112191..113375 Lactobacillus salivarius UCC118 3978167 YP_534997.1 CDS LSL_0093 NC_007929.1 113377 113973 D COG1573 [L] Uracil-DNA glycosylase; Uracil DNA glycosylase superfamily protein 113377..113973 Lactobacillus salivarius UCC118 3978168 YP_534998.1 CDS LSL_0094 NC_007929.1 114069 114566 D hypothetical protein 114069..114566 Lactobacillus salivarius UCC118 3978169 YP_534999.1 CDS LSL_0095 NC_007929.1 114740 118189 D COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 114740..118189 Lactobacillus salivarius UCC118 3978170 YP_535000.1 CDS LSL_0096 NC_007929.1 118318 118758 D hypothetical protein 118318..118758 Lactobacillus salivarius UCC118 3978171 YP_535001.1 CDS LSL_0097 NC_007929.1 118704 118871 R hypothetical protein complement(118704..118871) Lactobacillus salivarius UCC118 3978172 YP_535002.1 CDS cas1 NC_007929.1 118952 119857 D COG1343 [L] Uncharacterized protein predicted to be involved in DNA repair; CRISPR-associated protein 118952..119857 Lactobacillus salivarius UCC118 3978173 YP_535003.1 CDS cas2 NC_007929.1 119835 120140 D COG0718 [S] Uncharacterized protein conserved in bacteria; CRISPR-associated protein 119835..120140 Lactobacillus salivarius UCC118 3978174 YP_535004.1 CDS LSL_0100 NC_007929.1 120137 120808 D CRISPR-associated Csn2 family protein 120137..120808 Lactobacillus salivarius UCC118 3978175 YP_535005.1 CDS LSL_0105 NC_007929.1 122941 123261 D COG0640 [K] Predicted transcriptional regulators; PadR family transcriptional regulator 122941..123261 Lactobacillus salivarius UCC118 3978138 YP_535006.1 CDS LSL_0106 NC_007929.1 123264 123869 D COG0344 [S] Predicted membrane protein; hypothetical protein 123264..123869 Lactobacillus salivarius UCC118 3978139 YP_535007.1 CDS LSL_0107 NC_007929.1 123872 124837 D hypothetical protein 123872..124837 Lactobacillus salivarius UCC118 3978140 YP_535008.1 CDS LSL_0108 NC_007929.1 124856 125086 D COG0583 [K] Transcriptional regulator; stress-responsive transcriptional regulator PspC 124856..125086 Lactobacillus salivarius UCC118 3978141 YP_535009.1 CDS LSL_0109 NC_007929.1 125426 125737 D hypothetical protein 125426..125737 Lactobacillus salivarius UCC118 3978142 YP_535010.1 CDS glpK NC_007929.1 126139 127653 D Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 126139..127653 Lactobacillus salivarius UCC118 3978143 YP_535011.1 CDS glpO NC_007929.1 127666 129495 D COG0240 [C] Glycerol-3-phosphate dehydrogenase; alpha-glycerophosphate oxidase 127666..129495 Lactobacillus salivarius UCC118 3978144 YP_535012.1 CDS glpF NC_007929.1 129531 130238 D COG0580 [G] Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family); glycerol uptake facilitator protein 129531..130238 Lactobacillus salivarius UCC118 3978145 YP_535013.1 CDS LSL_0113 NC_007929.1 130357 131445 D COG3842 [E] ABC-type spermidine/putrescine transport systems, ATPase components; spermidine/putrescine ABC transporter ATP-binding protein 130357..131445 Lactobacillus salivarius UCC118 3978146 YP_535014.1 CDS potB NC_007929.1 131461 132261 D COG1176 [E] ABC-type spermidine/putrescine transport system, permease component I; spermidine/putrescine ABC transporter permease 131461..132261 Lactobacillus salivarius UCC118 3978147 YP_535015.1 CDS potC NC_007929.1 132262 133098 D COG1177 [E] ABC-type spermidine/putrescine transport system, permease component II; spermidine/putrescine ABC transporter permease 132262..133098 Lactobacillus salivarius UCC118 3978148 YP_535016.1 CDS potD NC_007929.1 133098 134183 D COG0687 [E] Spermidine/putrescine-binding periplasmic protein; spermidine/putrescine-binding protein 133098..134183 Lactobacillus salivarius UCC118 3978149 YP_535017.1 CDS LSL_0117 NC_007929.1 134991 135983 D COG2984 [R] ABC-type uncharacterized transport system, periplasmic component; ABC transporter substrate-binding protein 134991..135983 Lactobacillus salivarius UCC118 3978150 YP_535018.1 CDS LSL_0118 NC_007929.1 135980 136876 D COG0390 [R] ABC-type uncharacterized transport system, permease component; ABC transporter permease 135980..136876 Lactobacillus salivarius UCC118 3978151 YP_535019.1 CDS LSL_0119 NC_007929.1 136873 137637 D COG1101 [R] ABC-type uncharacterized transport system, ATPase component; ABC transporter, ATP-binding protein 136873..137637 Lactobacillus salivarius UCC118 3978152 YP_535020.1 CDS LSL_0120 NC_007929.1 137678 138307 R COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein complement(137678..138307) Lactobacillus salivarius UCC118 3978153 YP_535021.1 CDS greA NC_007929.1 138486 138959 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(138486..138959) Lactobacillus salivarius UCC118 3978154 YP_535022.1 CDS LSL_0122 NC_007929.1 139088 139195 D hypothetical protein 139088..139195 Lactobacillus salivarius UCC118 3978155 YP_535023.1 CDS trmE NC_007929.1 139402 140796 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 139402..140796 Lactobacillus salivarius UCC118 3978156 YP_535024.1 CDS gidA NC_007929.1 140820 142733 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 140820..142733 Lactobacillus salivarius UCC118 3978157 YP_535025.1 CDS gpmB NC_007929.1 143182 143853 R COG0406 [G] Fructose-2,6-bisphosphatase; phosphoglycerate mutase complement(143182..143853) Lactobacillus salivarius UCC118 3978120 YP_535026.1 CDS LSL_0126 NC_007929.1 143909 144772 R COG1266 [R] Predicted metal-dependent membrane protease; CAAX amino protease complement(143909..144772) Lactobacillus salivarius UCC118 3978121 YP_535027.1 CDS fldA NC_007929.1 144908 145378 D COG0716 [C] Flavodoxins; flavodoxin 144908..145378 Lactobacillus salivarius UCC118 3978122 YP_535028.1 CDS LSL_0128 NC_007929.1 145393 145803 D COG1791 [S] Uncharacterized conserved protein, contains double-stranded beta-helix domain; hypothetical protein 145393..145803 Lactobacillus salivarius UCC118 3978123 YP_535029.1 CDS metE NC_007929.1 146574 147698 D COG0620 [E] Methionine synthase II (cobalamin-independent); 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase 146574..147698 Lactobacillus salivarius UCC118 3978125 YP_535030.1 CDS LSL_0130 NC_007929.1 147764 148606 D COG1464 [P] ABC-type metal ion transport system, periplasmic component/surface antigen; ABC transporter substrate-binding protein 147764..148606 Lactobacillus salivarius UCC118 3978126 YP_535031.1 CDS LSL_0131 NC_007929.1 148628 149689 D COG1135 [P] ABC-type metal ion transport system, ATPase component; ABC transporter, ATP-binding protein 148628..149689 Lactobacillus salivarius UCC118 3978127 YP_535032.1 CDS LSL_0132 NC_007929.1 149682 150383 D COG2011 [P] ABC-type metal ion transport system, permease component; ABC transporter permease 149682..150383 Lactobacillus salivarius UCC118 3978128 YP_535033.1 CDS LSL_0133 NC_007929.1 150425 151573 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 150425..151573 Lactobacillus salivarius UCC118 3978129 YP_535034.1 CDS LSL_0134 NC_007929.1 151625 152269 R COG0778 [C] Nitroreductase; NAD(P)H-dependent quinone reductase complement(151625..152269) Lactobacillus salivarius UCC118 3978130 YP_535035.1 CDS LSL_0135 NC_007929.1 152437 153270 D acetoacetate decarboxylase 152437..153270 Lactobacillus salivarius UCC118 3978131 YP_535036.1 CDS LSL_0136 NC_007929.1 153287 154168 D converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 153287..154168 Lactobacillus salivarius UCC118 3978132 YP_535037.1 CDS LSL_0137 NC_007929.1 154226 155581 R COG0446 [R] Uncharacterized NAD(FAD)-dependent dehydrogenases; NADH peroxidase complement(154226..155581) Lactobacillus salivarius UCC118 3978133 YP_535038.1 CDS LSL_0138 NC_007929.1 155872 157971 D COG1982 [E] Arginine/lysine/ornithine decarboxylases; ornithine decarboxylase 155872..157971 Lactobacillus salivarius UCC118 3978134 YP_535039.1 CDS LSL_0139 NC_007929.1 158031 158555 R hypothetical protein complement(158031..158555) Lactobacillus salivarius UCC118 3978135 YP_535040.1 CDS LSL_0140 NC_007929.1 160075 160761 D COG2011 [P] ABC-type metal ion transport system, permease component; ABC transporter permease 160075..160761 Lactobacillus salivarius UCC118 3978137 YP_535041.1 CDS LSL_0141 NC_007929.1 160831 161646 D COG1464 [P] ABC-type metal ion transport system, periplasmic component/surface antigen; ABC transporter substrate-binding protein 160831..161646 Lactobacillus salivarius UCC118 3978102 YP_535042.1 CDS LSL_0142 NC_007929.1 161821 162375 R hypothetical protein complement(161821..162375) Lactobacillus salivarius UCC118 3978103 YP_535043.1 CDS LSL_0143 NC_007929.1 162486 162632 D hypothetical protein 162486..162632 Lactobacillus salivarius UCC118 3978104 YP_535044.1 CDS gdh NC_007929.1 162829 163623 D Converts glucose to D-glucono-1,5 lactone; glucose-1-dehydrogenase 162829..163623 Lactobacillus salivarius UCC118 3978105 YP_535045.1 CDS LSL_0145 NC_007929.1 163647 164489 D COG4975 [G] glucose uptake permease; glucose uptake protein 163647..164489 Lactobacillus salivarius UCC118 3978106 YP_535046.1 CDS LSL_0146 NC_007929.1 164531 165409 R COG0583 [K] Transcriptional regulator; LysR family transcriptional regulator complement(164531..165409) Lactobacillus salivarius UCC118 3978107 YP_535047.1 CDS LSL_0147 NC_007929.1 165518 166387 D COG0656 [R] Aldo/keto reductases, related to diketogulonate reductase; 2,5-diketo-D-gluconic acid reductase 165518..166387 Lactobacillus salivarius UCC118 3978108 YP_535048.1 CDS LSL_0148 NC_007929.1 166411 167205 D COG1028 [IQR] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Short chain dehydrogenase 166411..167205 Lactobacillus salivarius UCC118 3978109 YP_535049.1 CDS LSL_0149 NC_007929.1 167313 167540 R hypothetical protein complement(167313..167540) Lactobacillus salivarius UCC118 3978110 YP_535050.1 CDS LSL_0150 NC_007929.1 167467 167679 D hypothetical protein 167467..167679 Lactobacillus salivarius UCC118 3978111 YP_535051.1 CDS acoA NC_007929.1 177223 178320 D COG1071 [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit; pyruvate dehydrogenase E1 component alpha subunit 177223..178320 Lactobacillus salivarius UCC118 3978113 YP_535052.1 CDS acoB NC_007929.1 178323 179300 D COG0022 [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit; pyruvate dehydrogenase E1 component beta subunit 178323..179300 Lactobacillus salivarius UCC118 3978114 YP_535053.1 CDS aceF NC_007929.1 179317 180597 D COG0508 [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex 179317..180597 Lactobacillus salivarius UCC118 3978115 YP_535054.1 CDS lpd NC_007929.1 180605 182011 D E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 180605..182011 Lactobacillus salivarius UCC118 3978116 YP_535055.1 CDS lplA NC_007929.1 182098 183117 D COG0095 [H] Lipoate-protein ligase A; lipoate-protein ligase A 182098..183117 Lactobacillus salivarius UCC118 3978117 YP_535056.1 CDS LSL_0158 NC_007929.1 183230 183994 D COG0392 [S] Predicted integral membrane protein; integral membrane protein 183230..183994 Lactobacillus salivarius UCC118 3978118 YP_535057.1 CDS LSL_0159 NC_007929.1 184064 185197 D hypothetical protein 184064..185197 Lactobacillus salivarius UCC118 3978119 YP_535058.1 CDS LSL_0160 NC_007929.1 185249 185599 R hypothetical protein complement(185249..185599) Lactobacillus salivarius UCC118 3978082 YP_535059.1 CDS LSL_0161 NC_007929.1 185735 186004 D ACT domain-containing protein; hypothetical protein 185735..186004 Lactobacillus salivarius UCC118 3978083 YP_535060.1 CDS LSL_0162 NC_007929.1 186021 187364 D COG0011 [S] Uncharacterized conserved protein; hypothetical protein 186021..187364 Lactobacillus salivarius UCC118 3978084 YP_535061.1 CDS LSL_0163 NC_007929.1 187630 188385 D COG1349 [KG] Transcriptional regulators of sugar metabolism; transcription regulator of fructose operon 187630..188385 Lactobacillus salivarius UCC118 3978085 YP_535062.1 CDS fruK NC_007929.1 188382 189296 D COG1105 [G] Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); 1-phosphofructokinase 188382..189296 Lactobacillus salivarius UCC118 3978086 YP_535063.1 CDS fruA NC_007929.1 189324 191279 D COG1299 [G] Phosphotransferase system, fructose-specific IIC component; PTS system, fructose-specific IIABC component 189324..191279 Lactobacillus salivarius UCC118 3978087 YP_535064.1 CDS LSL_0166 NC_007929.1 191403 192605 D hypothetical protein 191403..192605 Lactobacillus salivarius UCC118 3978088 YP_535065.1 CDS LSL_0167 NC_007929.1 192586 193263 D hypothetical protein 192586..193263 Lactobacillus salivarius UCC118 3978089 YP_535066.1 CDS LSL_0168 NC_007929.1 193380 194819 R COG0531 [E] Amino acid transporters; amino acid permease complement(193380..194819) Lactobacillus salivarius UCC118 3978090 YP_535067.1 CDS LSL_0169 NC_007929.1 195072 196886 R COG0474 [P] Cation transport ATPase; lead, cadmium, zinc and mercury transporting ATPase complement(195072..196886) Lactobacillus salivarius UCC118 3978091 YP_535068.1 CDS LSL_0170 NC_007929.1 197018 197881 R COG0718 [S] Uncharacterized protein conserved in bacteria; DegV family protein complement(197018..197881) Lactobacillus salivarius UCC118 3978092 YP_535069.1 CDS rfaG NC_007929.1 198103 199038 D COG0463 [M] Glycosyltransferases involved in cell wall biogenesis; glycosyltransferase 198103..199038 Lactobacillus salivarius UCC118 3978093 YP_535070.1 CDS guaA NC_007929.1 199067 199732 D COG0518 [F] GMP synthase - Glutamine amidotransferase domain; glutamine-hydrolyzing; GMP synthase 199067..199732 Lactobacillus salivarius UCC118 3978094 YP_535071.1 CDS comA NC_007929.1 199775 200134 R COG2050 [Q] Uncharacterized protein, possibly involved in aromatic compounds catabolism; ComA operon protein 2 complement(199775..200134) Lactobacillus salivarius UCC118 3978095 YP_535072.1 CDS menB NC_007929.1 200216 201037 D catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 200216..201037 Lactobacillus salivarius UCC118 3978096 YP_535073.1 CDS menE NC_007929.1 201037 202470 D converts O-succinylbenzoate to O-succinylbenzoyl-CoA; O-succinylbenzoic acid--CoA ligase 201037..202470 Lactobacillus salivarius UCC118 3978097 YP_535074.1 CDS LSL_0176 NC_007929.1 202545 203285 D COG0718 [S] Uncharacterized protein conserved in bacteria; ErfK family protein 202545..203285 Lactobacillus salivarius UCC118 3978098 YP_535075.1 CDS LSL_0177 NC_007929.1 203419 204789 D COG0477 [GEPR] Permeases of the major facilitator superfamily; multidrug resistance protein B 203419..204789 Lactobacillus salivarius UCC118 3978099 YP_535076.1 CDS LSL_0178 NC_007929.1 204794 205207 D COG0583 [K] Transcriptional regulator; MarR family transcriptional regulator 204794..205207 Lactobacillus salivarius UCC118 3978100 YP_535077.1 CDS LSL_0179 NC_007929.1 205303 206721 D COG4690 [E] Dipeptidase; dipeptidase A 205303..206721 Lactobacillus salivarius UCC118 3978101 YP_535078.1 CDS LSL_0180 NC_007929.1 206783 207865 R COG0583 [K] Transcriptional regulator; LytR family transcriptional regulator complement(206783..207865) Lactobacillus salivarius UCC118 3978067 YP_535079.1 CDS LSL_0181 NC_007929.1 207879 208244 R COG0344 [S] Predicted membrane protein; hypothetical protein complement(207879..208244) Lactobacillus salivarius UCC118 3978068 YP_535080.1 CDS LSL_0182 NC_007929.1 208246 209091 R COG0679 [R] Predicted permeases; hypothetical protein complement(208246..209091) Lactobacillus salivarius UCC118 3978069 YP_535081.1 CDS LSL_0183 NC_007929.1 209213 210070 D COG0583 [K] Transcriptional regulator; LysR family transcriptional regulator 209213..210070 Lactobacillus salivarius UCC118 3978070 YP_535082.1 CDS LSL_0184 NC_007929.1 210088 210753 D COG0671 [I] Membrane-associated phospholipid phosphatase; phosphatase 210088..210753 Lactobacillus salivarius UCC118 3978071 YP_535083.1 CDS wecD NC_007929.1 210768 211238 D acetyltransferase 210768..211238 Lactobacillus salivarius UCC118 3978072 YP_535084.1 CDS LSL_0186 NC_007929.1 211461 213146 D catalyzes the formation of 2-acetolactate from pyruvate in stationary phase; acetolactate synthase 211461..213146 Lactobacillus salivarius UCC118 3978073 YP_535085.1 CDS alsD NC_007929.1 213168 213884 D COG3527 [Q] alpha-acetolactate decarboxylase; alpha-acetolactate decarboxylase 213168..213884 Lactobacillus salivarius UCC118 3978074 YP_535086.1 CDS LSL_0188 NC_007929.1 214228 215679 D COG0531 [E] Amino acid transporters; lysine-specific permease 214228..215679 Lactobacillus salivarius UCC118 3978075 YP_535087.1 CDS serS NC_007929.1 215973 217250 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 215973..217250 Lactobacillus salivarius UCC118 3978076 YP_535088.1 CDS pyrB NC_007929.1 224035 224985 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 224035..224985 Lactobacillus salivarius UCC118 3978040 YP_535089.1 CDS pyrC NC_007929.1 224985 226274 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 224985..226274 Lactobacillus salivarius UCC118 3978041 YP_535090.1 CDS carA NC_007929.1 226274 227362 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 226274..227362 Lactobacillus salivarius UCC118 3978042 YP_535091.1 CDS carB NC_007929.1 227355 230540 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 227355..230540 Lactobacillus salivarius UCC118 3978043 YP_535092.1 CDS pyrD NC_007929.1 230559 231503 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B 230559..231503 Lactobacillus salivarius UCC118 3978044 YP_535093.1 CDS LSL_0195 NC_007929.1 231806 232273 D COG4463 [K] Transcriptional repressor of class III stress genes; transcriptional regulator ctsR 231806..232273 Lactobacillus salivarius UCC118 3978046 YP_535094.1 CDS clpC NC_007929.1 232289 234781 D COG0542 [O] ATPases with chaperone activity, ATP-binding subunit; negative regulator of genetic competence 232289..234781 Lactobacillus salivarius UCC118 3978047 YP_535095.1 CDS rpoB NC_007929.1 235025 238624 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 235025..238624 Lactobacillus salivarius UCC118 3978048 YP_535096.1 CDS rpoC NC_007929.1 238653 242318 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 238653..242318 Lactobacillus salivarius UCC118 3978049 YP_535097.1 CDS pilD NC_007929.1 242423 243079 R COG1989 [NOU] type II secretory pathway, prepilin signal peptidase PulO and related peptidases; type IV prepilin leader peptidase complement(242423..243079) Lactobacillus salivarius UCC118 3978050 YP_535098.1 CDS rpsL NC_007929.1 243364 243777 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 243364..243777 Lactobacillus salivarius UCC118 3978051 YP_535099.1 CDS rpsG NC_007929.1 243812 244282 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 243812..244282 Lactobacillus salivarius UCC118 3978052 YP_535100.1 CDS efg NC_007929.1 244403 246496 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 244403..246496 Lactobacillus salivarius UCC118 3978053 YP_535101.1 CDS sir2 NC_007929.1 246600 247331 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 246600..247331 Lactobacillus salivarius UCC118 3978054 YP_535102.1 CDS LSL_0204 NC_007929.1 247349 248533 D COG1168 [E] Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; aminotransferase class I and II 247349..248533 Lactobacillus salivarius UCC118 3978055 YP_535103.1 CDS LSL_0205 NC_007929.1 248688 249377 D COG0745 [TK] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two-component response regulator 248688..249377 Lactobacillus salivarius UCC118 3978056 YP_535104.1 CDS baeS NC_007929.1 249405 250556 D COG0642 [T] signal transduction histidine kinase; two component system histidine kinase 249405..250556 Lactobacillus salivarius UCC118 3978057 YP_535105.1 CDS LSL_0207 NC_007929.1 253676 254545 D COG2017 [G] Galactose mutarotase and related enzymes; galactose mutarotase-like 253676..254545 Lactobacillus salivarius UCC118 3978027 YP_535106.1 CDS LSL_0208 NC_007929.1 254666 255835 D COG0477 [GEPR] Permeases of the major facilitator superfamily; hypothetical protein 254666..255835 Lactobacillus salivarius UCC118 3978028 YP_535107.1 CDS dxs NC_007929.1 255956 257716 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 255956..257716 Lactobacillus salivarius UCC118 3978029 YP_535108.1 CDS LSL_0210 NC_007929.1 257836 259821 D COG1136 [V] ABC-type antimicrobial peptide transport system, ATPase component; ABC transporter, ATP-binding protein 257836..259821 Lactobacillus salivarius UCC118 3978030 YP_535109.1 CDS LSL_0211 NC_007929.1 259832 260482 D COG0583 [K] Transcriptional regulator; TetR family transcriptional regulator 259832..260482 Lactobacillus salivarius UCC118 3978031 YP_535110.1 CDS LSL_0212 NC_007929.1 260504 262237 D COG1132 [V] ABC-type multidrug transport system, ATPase and permease components; multidrug ABC transporter permease/ATP-binding protein 260504..262237 Lactobacillus salivarius UCC118 3978032 YP_535111.1 CDS LSL_0213 NC_007929.1 265057 266436 D COG2110 [R] Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1; ATPase associated with chromosome architecture/replication 265057..266436 Lactobacillus salivarius UCC118 3978035 YP_535112.1 CDS LSL_0214 NC_007929.1 266536 267093 D COG0011 [S] Uncharacterized conserved protein; LemA protein 266536..267093 Lactobacillus salivarius UCC118 3978036 YP_535113.1 CDS htpX NC_007929.1 267105 267992 D metalloprotease; heat shock protein HtpX 267105..267992 Lactobacillus salivarius UCC118 3978037 YP_535114.1 CDS rep NC_007929.1 268239 270506 R COG0210 [L] Superfamily I DNA and RNA helicases; ATP-dependent DNA helicase complement(268239..270506) Lactobacillus salivarius UCC118 3978039 YP_535115.1 CDS czcD NC_007929.1 270630 271655 R COG0053 [P] Predicted Co/Zn/Cd cation transporters; cobalt-zinc-cadmium resistance protein complement(270630..271655) Lactobacillus salivarius UCC118 3977589 YP_535116.1 CDS trpS NC_007929.1 271973 272992 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase II 271973..272992 Lactobacillus salivarius UCC118 3977590 YP_535117.1 CDS gppA NC_007929.1 273081 274010 D COG0248 [FP] Exopolyphosphatase; exopolyphosphatase 273081..274010 Lactobacillus salivarius UCC118 3977591 YP_535118.1 CDS LSL_0220 NC_007929.1 274135 274860 D COG1131 [V] ABC-type multidrug transport system, ATPase component; ABC transporter, ATP-binding protein 274135..274860 Lactobacillus salivarius UCC118 3977592 YP_535119.1 CDS LSL_0221 NC_007929.1 274863 275975 D COG0842 [V] ABC-type multidrug transport system, permease component; ABC transporter permease 274863..275975 Lactobacillus salivarius UCC118 3977593 YP_535120.1 CDS LSL_0222 NC_007929.1 275988 276635 D COG0583 [K] Transcriptional regulator; TetR family transcriptional regulator 275988..276635 Lactobacillus salivarius UCC118 3977594 YP_535121.1 CDS LSL_0223 NC_007929.1 276778 277581 R COG0834 [ET] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; amino acid ABC transporter substrate-binding protein complement(276778..277581) Lactobacillus salivarius UCC118 3977595 YP_535122.1 CDS LSL_0224 NC_007929.1 277661 278926 D COG1257 [I] Hydroxymethylglutaryl-CoA reductase; 3-hydroxy-3-methylglutaryl-coenzyme A reductase / 3-hydroxy-3-methylglutaryl-coenzyme Auctase 277661..278926 Lactobacillus salivarius UCC118 3977596 YP_535123.1 CDS LSL_0225 NC_007929.1 278926 279882 D IpaB/EvcA family protein 278926..279882 Lactobacillus salivarius UCC118 3977597 YP_535124.1 CDS metG NC_007929.1 279986 282013 D COG0143 [J] Methionyl-tRNA synthetase; methionyl-tRNA synthetase / protein secretion chaperonin CsaA 279986..282013 Lactobacillus salivarius UCC118 3977598 YP_535125.1 CDS tatD NC_007929.1 282147 282917 D COG0084 [L] Mg-dependent DNase; TatD family deoxyribonuclease 282147..282917 Lactobacillus salivarius UCC118 3977599 YP_535126.1 CDS LSL_0228 NC_007929.1 282928 283485 D COG1658 [L] Small primase-like proteins (Toprim domain); ribonuclease M5 282928..283485 Lactobacillus salivarius UCC118 3977600 YP_535127.1 CDS ksgA NC_007929.1 283497 284387 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 283497..284387 Lactobacillus salivarius UCC118 3977601 YP_535128.1 CDS LSL_0230 NC_007929.1 284475 284708 D COG0718 [S] Uncharacterized protein conserved in bacteria; VEG protein 284475..284708 Lactobacillus salivarius UCC118 3977602 YP_535129.1 CDS LSL_0231 NC_007929.1 284804 285652 D COG4814 [R] Uncharacterized protein with an alpha/beta hydrolase fold; hypothetical protein 284804..285652 Lactobacillus salivarius UCC118 3977603 YP_535130.1 CDS avtA NC_007929.1 285665 286783 D associated with arginine deiminase pathway genes; probably functions in arginine catabolism; transaminase 285665..286783 Lactobacillus salivarius UCC118 3977604 YP_535131.1 CDS argR NC_007929.1 286827 287297 D COG1438 [K] Arginine repressor; arginine repressor ArgR 286827..287297 Lactobacillus salivarius UCC118 3977605 YP_535132.1 CDS ipk NC_007929.1 287336 288205 R An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(287336..288205) Lactobacillus salivarius UCC118 3977606 YP_535133.1 CDS amtB NC_007929.1 288421 289728 D COG0004 [P] Ammonia permease; ammonium transporter 288421..289728 Lactobacillus salivarius UCC118 3977607 YP_535134.1 CDS xerC NC_007929.1 289941 291086 R COG0582 [L] Integrase; phage integrase complement(289941..291086) Lactobacillus salivarius UCC118 3976912 YP_535135.1 CDS LSL_0237 NC_007929.1 291235 291630 R hypothetical protein complement(291235..291630) Lactobacillus salivarius UCC118 3976913 YP_535136.1 CDS LSL_0238 NC_007929.1 291510 291944 R hypothetical protein complement(291510..291944) Lactobacillus salivarius UCC118 3976914 YP_535137.1 CDS LSL_0239 NC_007929.1 291941 292384 R hypothetical protein complement(291941..292384) Lactobacillus salivarius UCC118 3976915 YP_535138.1 CDS LSL_0240 NC_007929.1 292377 293300 R COG0455 [D] ATPases involved in chromosome partitioning; cII-like protein, phage associated complement(292377..293300) Lactobacillus salivarius UCC118 3976916 YP_535139.1 CDS LSL_0241 NC_007929.1 293385 293603 R hypothetical protein complement(293385..293603) Lactobacillus salivarius UCC118 3976917 YP_535140.1 CDS LSL_0242 NC_007929.1 293709 294485 R COG0640 [K] Predicted transcriptional regulators; cI-like repressor, phage associated complement(293709..294485) Lactobacillus salivarius UCC118 3976918 YP_535141.1 CDS LSL_0243 NC_007929.1 294545 294694 D hypothetical protein 294545..294694 Lactobacillus salivarius UCC118 3976919 YP_535142.1 CDS LSL_0244 NC_007929.1 295016 295222 D hypothetical protein 295016..295222 Lactobacillus salivarius UCC118 3976920 YP_535143.1 CDS LSL_0245 NC_007929.1 295260 295475 D hypothetical protein 295260..295475 Lactobacillus salivarius UCC118 3976921 YP_535144.1 CDS LSL_0246 NC_007929.1 295477 296082 R hypothetical protein complement(295477..296082) Lactobacillus salivarius UCC118 3976922 YP_535145.1 CDS LSL_0247 NC_007929.1 296306 296497 D DNA binding protein, phage associated 296306..296497 Lactobacillus salivarius UCC118 3976923 YP_535146.1 CDS LSL_0248 NC_007929.1 296500 296640 D hypothetical protein 296500..296640 Lactobacillus salivarius UCC118 3976924 YP_535147.1 CDS LSL_0249 NC_007929.1 296633 296806 R hypothetical protein complement(296633..296806) Lactobacillus salivarius UCC118 3976925 YP_535148.1 CDS cro NC_007929.1 296879 297070 D COG0640 [K] Predicted transcriptional regulators; Cro-like protein, phage associated 296879..297070 Lactobacillus salivarius UCC118 3976926 YP_535149.1 CDS LSL_0251 NC_007929.1 297109 297837 D COG3645 [S] Uncharacterized phage-encoded protein; phage antirepressor protein 297109..297837 Lactobacillus salivarius UCC118 3976927 YP_535150.1 CDS LSL_0252 NC_007929.1 297864 298049 D hypothetical protein 297864..298049 Lactobacillus salivarius UCC118 3976928 YP_535151.1 CDS LSL_0253 NC_007929.1 298348 298527 D hypothetical protein 298348..298527 Lactobacillus salivarius UCC118 3976929 YP_535152.1 CDS LSL_0254 NC_007929.1 298520 298657 D hypothetical protein 298520..298657 Lactobacillus salivarius UCC118 3976930 YP_535153.1 CDS LSL_0255 NC_007929.1 298644 298880 D hypothetical protein 298644..298880 Lactobacillus salivarius UCC118 3976856 YP_535154.1 CDS LSL_0256 NC_007929.1 298873 299589 D hypothetical protein 298873..299589 Lactobacillus salivarius UCC118 3976857 YP_535155.1 CDS LSL_0257 NC_007929.1 299582 300565 D replisome organizer, phage associated 299582..300565 Lactobacillus salivarius UCC118 3976858 YP_535156.1 CDS LSL_0258 NC_007929.1 300562 300765 D hypothetical protein 300562..300765 Lactobacillus salivarius UCC118 3976859 YP_535157.1 CDS LSL_0259 NC_007929.1 300769 301035 D hypothetical protein 300769..301035 Lactobacillus salivarius UCC118 3976860 YP_535158.1 CDS LSL_0260 NC_007929.1 301016 301432 D replication terminator protein, phage associated 301016..301432 Lactobacillus salivarius UCC118 3976861 YP_535159.1 CDS LSL_0261 NC_007929.1 301437 302165 D hypothetical protein 301437..302165 Lactobacillus salivarius UCC118 3976862 YP_535160.1 CDS LSL_0262 NC_007929.1 302158 302382 D hypothetical protein 302158..302382 Lactobacillus salivarius UCC118 3976863 YP_535161.1 CDS LSL_0263 NC_007929.1 302384 302581 D hypothetical protein 302384..302581 Lactobacillus salivarius UCC118 3976864 YP_535162.1 CDS LSL_0264 NC_007929.1 302587 302916 D hypothetical protein 302587..302916 Lactobacillus salivarius UCC118 3976865 YP_535163.1 CDS LSL_0265 NC_007929.1 302917 303093 D hypothetical protein 302917..303093 Lactobacillus salivarius UCC118 3976866 YP_535164.1 CDS LSL_0266 NC_007929.1 303160 303522 D hypothetical protein 303160..303522 Lactobacillus salivarius UCC118 3976867 YP_535165.1 CDS LSL_0267 NC_007929.1 303512 303745 D hypothetical protein 303512..303745 Lactobacillus salivarius UCC118 3976868 YP_535166.1 CDS LSL_0268 NC_007929.1 303759 303986 D hypothetical protein 303759..303986 Lactobacillus salivarius UCC118 3976869 YP_535167.1 CDS LSL_0270 NC_007929.1 304471 304713 D hypothetical protein 304471..304713 Lactobacillus salivarius UCC118 3976870 YP_535168.1 CDS LSL_0271 NC_007929.1 304728 305168 D hypothetical protein 304728..305168 Lactobacillus salivarius UCC118 3976871 YP_535169.1 CDS LSL_0272 NC_007929.1 305179 305460 D hypothetical protein 305179..305460 Lactobacillus salivarius UCC118 3976872 YP_535170.1 CDS LSL_0273 NC_007929.1 305478 305660 D hypothetical protein 305478..305660 Lactobacillus salivarius UCC118 3976873 YP_535171.1 CDS LSL_0274 NC_007929.1 305735 306175 D hypothetical protein 305735..306175 Lactobacillus salivarius UCC118 3976874 YP_535172.1 CDS LSL_0275 NC_007929.1 306272 306517 D hypothetical protein 306272..306517 Lactobacillus salivarius UCC118 3977133 YP_535173.1 CDS LSL_0276 NC_007929.1 306504 306944 D hypothetical protein 306504..306944 Lactobacillus salivarius UCC118 3977134 YP_535174.1 CDS LSL_0277 NC_007929.1 307201 307863 D DNA packaging, phage associated 307201..307863 Lactobacillus salivarius UCC118 3977135 YP_535175.1 CDS LSL_0278 NC_007929.1 307904 308056 D hypothetical protein 307904..308056 Lactobacillus salivarius UCC118 3977136 YP_535176.1 CDS mcrA NC_007929.1 308058 308588 D COG1403 [V] Restriction endonuclease; phage endonuclease 308058..308588 Lactobacillus salivarius UCC118 3977137 YP_535177.1 CDS LSL_0280 NC_007929.1 308767 309240 D COG3728 [L] phage terminase, small subunit; phage terminase small subunit 308767..309240 Lactobacillus salivarius UCC118 3977138 YP_535178.1 CDS LSL_0281 NC_007929.1 309240 311123 D COG4626 [R] phage terminase-like protein, large subunit; terminase large subunit 309240..311123 Lactobacillus salivarius UCC118 3977139 YP_535179.1 CDS LSL_0282 NC_007929.1 311113 311307 D phage head-tail joining protein 311113..311307 Lactobacillus salivarius UCC118 3977140 YP_535180.1 CDS LSL_0283 NC_007929.1 311307 312482 D COG4672 [S] phage-related protein; portal protein 311307..312482 Lactobacillus salivarius UCC118 3977141 YP_535181.1 CDS clpP NC_007929.1 312463 313182 D COG0740 [OU] Protease subunit of ATP-dependent Clp proteases; ATP-dependent Clp protease proteolytic subunit 312463..313182 Lactobacillus salivarius UCC118 3977142 YP_535182.1 CDS LSL_0285 NC_007929.1 313172 314368 D major head protein 313172..314368 Lactobacillus salivarius UCC118 3977143 YP_535183.1 CDS LSL_0286 NC_007929.1 314380 314703 D DNA packaging, phage associated 314380..314703 Lactobacillus salivarius UCC118 3977144 YP_535184.1 CDS LSL_0287 NC_007929.1 314696 315052 D phage head-tail joining protein 314696..315052 Lactobacillus salivarius UCC118 3977145 YP_535185.1 CDS LSL_0288 NC_007929.1 315045 315437 D phage head-tail joining protein 315045..315437 Lactobacillus salivarius UCC118 3977146 YP_535186.1 CDS LSL_0289 NC_007929.1 315437 315814 D phage tail protein 315437..315814 Lactobacillus salivarius UCC118 3977147 YP_535187.1 CDS LSL_0290 NC_007929.1 315816 316520 D phage major tail protein 315816..316520 Lactobacillus salivarius UCC118 3977148 YP_535188.1 CDS LSL_0291 NC_007929.1 316570 316968 D hypothetical protein 316570..316968 Lactobacillus salivarius UCC118 3977149 YP_535189.1 CDS LSL_0292 NC_007929.1 316971 317177 D hypothetical protein 316971..317177 Lactobacillus salivarius UCC118 3977150 YP_535190.1 CDS LSL_0293 NC_007929.1 317225 317638 D hypothetical protein 317225..317638 Lactobacillus salivarius UCC118 3977151 YP_535191.1 CDS LSL_0294 NC_007929.1 317693 321418 D COG5283 [S] phage-related tail protein; phage tail tape mesure 317693..321418 Lactobacillus salivarius UCC118 3977152 YP_535192.1 CDS LSL_0295 NC_007929.1 321431 322258 D hypothetical protein 321431..322258 Lactobacillus salivarius UCC118 3977316 YP_535193.1 CDS LSL_0296 NC_007929.1 322274 324586 D COG3757 [M] Lyzozyme M1 (1,4-beta-N-acetylmuramidase); phage lysin 322274..324586 Lactobacillus salivarius UCC118 3977317 YP_535194.1 CDS LSL_0297 NC_007929.1 324579 324917 D hypothetical protein 324579..324917 Lactobacillus salivarius UCC118 3977318 YP_535195.1 CDS LSL_0298 NC_007929.1 325026 326372 D hypothetical protein 325026..326372 Lactobacillus salivarius UCC118 3977319 YP_535196.1 CDS LSL_0299 NC_007929.1 326553 326975 D hypothetical protein 326553..326975 Lactobacillus salivarius UCC118 3977320 YP_535197.1 CDS LSL_0300 NC_007929.1 326989 327396 D hypothetical protein 326989..327396 Lactobacillus salivarius UCC118 3977321 YP_535198.1 CDS LSL_0301 NC_007929.1 327399 327581 D hypothetical protein 327399..327581 Lactobacillus salivarius UCC118 3977322 YP_535199.1 CDS LSL_0302 NC_007929.1 327634 327939 D hypothetical protein 327634..327939 Lactobacillus salivarius UCC118 3977323 YP_535200.1 CDS LSL_0303 NC_007929.1 327936 328262 D hypothetical protein 327936..328262 Lactobacillus salivarius UCC118 3977324 YP_535201.1 CDS LSL_0304 NC_007929.1 328274 329542 D COG1388 [M] FOG: LysM repeat; phage lysin 328274..329542 Lactobacillus salivarius UCC118 3977325 YP_535202.1 CDS argH NC_007929.1 330044 331426 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(330044..331426) Lactobacillus salivarius UCC118 3977326 YP_535203.1 CDS argG NC_007929.1 331450 332661 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(331450..332661) Lactobacillus salivarius UCC118 3977327 YP_535204.1 CDS araT NC_007929.1 333223 334398 D COG0436 [E] Aspartate/tyrosine/aromatic aminotransferase; aromatic amino acid aminotransferase 333223..334398 Lactobacillus salivarius UCC118 3977328 YP_535205.1 CDS ldhA NC_007929.1 334414 335403 D COG1052 [CHR] Lactate dehydrogenase and related dehydrogenases; D-lactate dehydrogenase 334414..335403 Lactobacillus salivarius UCC118 3977329 YP_535206.1 CDS LSL_0309 NC_007929.1 335422 336471 D COG3641 [R] Predicted membrane protein, toxin regulator; hypothetical protein 335422..336471 Lactobacillus salivarius UCC118 3977330 YP_535207.1 CDS mbp2 NC_007929.1 336947 340576 D COG3652 [S] Predicted outer membrane protein; mucus binding protein 336947..340576 Lactobacillus salivarius UCC118 3977331 YP_535208.1 CDS LSL_0312 NC_007929.1 340699 341988 R COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase complement(340699..341988) Lactobacillus salivarius UCC118 3977332 YP_535209.1 CDS asd NC_007929.1 342157 343248 R catalyzes the formation of aspartate semialdehyde from aspartyl phosphate; aspartate-semialdehyde dehydrogenase complement(342157..343248) Lactobacillus salivarius UCC118 3977333 YP_535210.1 CDS LSL_0314 NC_007929.1 343478 343876 D COG0640 [K] Predicted transcriptional regulators; MerR family transcriptional regulator 343478..343876 Lactobacillus salivarius UCC118 3977334 YP_535211.1 CDS purR NC_007929.1 344198 345037 D COG0503 [F] Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins; pur operon repressor 344198..345037 Lactobacillus salivarius UCC118 3977550 YP_535212.1 CDS LSL_0316 NC_007929.1 345168 346385 D COG0477 [GEPR] Permeases of the major facilitator superfamily; macrolide-efflux protein 345168..346385 Lactobacillus salivarius UCC118 3977551 YP_535213.1 CDS glmU NC_007929.1 346528 347937 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 346528..347937 Lactobacillus salivarius UCC118 3977552 YP_535214.1 CDS prsA NC_007929.1 348028 349005 D COG0462 [FE] Phosphoribosylpyrophosphate synthetase; ribose-phosphate pyrophosphokinase 348028..349005 Lactobacillus salivarius UCC118 3977553 YP_535215.1 CDS rimL NC_007929.1 349079 349603 D COG1670 [J] acetyltransferases, including N-acetylases of ribosomal proteins; ribosomal-protein-serine acetyltransferase 349079..349603 Lactobacillus salivarius UCC118 3977554 YP_535216.1 CDS LSL_0320 NC_007929.1 349754 350593 R COG0656 [R] Aldo/keto reductases, related to diketogulonate reductase; 2,5-diketo-D-gluconic acid reductase complement(349754..350593) Lactobacillus salivarius UCC118 3977555 YP_535217.1 CDS LSL_0321 NC_007929.1 350599 350835 R hypothetical protein complement(350599..350835) Lactobacillus salivarius UCC118 3977556 YP_535218.1 CDS udp NC_007929.1 350978 351748 D COG2820 [F] Uridine phosphorylase; phosphorylase Pnp/Udp family protein 350978..351748 Lactobacillus salivarius UCC118 3977557 YP_535219.1 CDS LSL_0323 NC_007929.1 351823 353445 D COG0488 [R] ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter, ATP-binding protein 351823..353445 Lactobacillus salivarius UCC118 3977558 YP_535220.1 CDS LSL_0324 NC_007929.1 353519 354178 D COG2220 [R] Predicted Zn-dependent hydrolases of the beta-lactamase fold; metallo-beta-lactamase family protein 353519..354178 Lactobacillus salivarius UCC118 3977559 YP_535221.1 CDS birA NC_007929.1 354228 355193 R COG0340 [H] Biotin-(acetyl-CoA carboxylase) ligase; biotin operon repressor / biotin--[acetyl-CoA-carboxylase] synthetase complement(354228..355193) Lactobacillus salivarius UCC118 3977560 YP_535222.1 CDS LSL_0326 NC_007929.1 355319 356422 D COG5438 [S] Predicted multitransmembrane protein; hypothetical protein 355319..356422 Lactobacillus salivarius UCC118 3977561 YP_535223.1 CDS LSL_0327 NC_007929.1 356419 357168 D COG5438 [S] Predicted multitransmembrane protein; hypothetical protein 356419..357168 Lactobacillus salivarius UCC118 3977562 YP_535224.1 CDS LSL_0328 NC_007929.1 357379 358413 D hypothetical protein 357379..358413 Lactobacillus salivarius UCC118 3977563 YP_535225.1 CDS spoVK NC_007929.1 358413 360020 D COG0464 [O] ATPases of the AAA+ class; ATPases of the AAA+ class 358413..360020 Lactobacillus salivarius UCC118 3977564 YP_535226.1 CDS LSL_0330 NC_007929.1 360024 360908 D hypothetical protein 360024..360908 Lactobacillus salivarius UCC118 3977565 YP_535227.1 CDS LSL_0331 NC_007929.1 360871 361320 D hypothetical protein 360871..361320 Lactobacillus salivarius UCC118 3977566 YP_535228.1 CDS LSL_0332 NC_007929.1 361325 363325 D hypothetical protein 361325..363325 Lactobacillus salivarius UCC118 3977567 YP_535229.1 CDS LSL_0333 NC_007929.1 363318 365933 D hypothetical protein 363318..365933 Lactobacillus salivarius UCC118 3977568 YP_535230.1 CDS LSL_0334 NC_007929.1 365987 367081 D hypothetical protein 365987..367081 Lactobacillus salivarius UCC118 3977569 YP_535231.1 CDS LSL_0335 NC_007929.1 367099 367794 D hypothetical protein 367099..367794 Lactobacillus salivarius UCC118 3977531 YP_535232.1 CDS LSL_0336 NC_007929.1 367852 368319 R COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein complement(367852..368319) Lactobacillus salivarius UCC118 3977532 YP_535233.1 CDS LSL_0337 NC_007929.1 368383 369204 R COG0561 [R] Predicted hydrolases of the HAD superfamily; HAD superfamily hydrolase complement(368383..369204) Lactobacillus salivarius UCC118 3977533 YP_535234.1 CDS LSL_0338 NC_007929.1 369220 370575 R COG1078 [R] HD superfamily phosphohydrolases; hydrolase complement(369220..370575) Lactobacillus salivarius UCC118 3977534 YP_535235.1 CDS guaA NC_007929.1 370767 371435 D COG0518 [F] GMP synthase - Glutamine amidotransferase domain; glutamine-hydrolyzing; GMP synthase 370767..371435 Lactobacillus salivarius UCC118 3977535 YP_535236.1 CDS LSL_0340 NC_007929.1 371538 371975 D hypothetical protein 371538..371975 Lactobacillus salivarius UCC118 3977536 YP_535237.1 CDS rpoE NC_007929.1 372021 372611 D participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; DNA-directed RNA polymerase subunit delta 372021..372611 Lactobacillus salivarius UCC118 3977537 YP_535238.1 CDS pyrG NC_007929.1 372786 374384 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 372786..374384 Lactobacillus salivarius UCC118 3977538 YP_535239.1 CDS LSL_0343 NC_007929.1 374455 374655 D hypothetical protein 374455..374655 Lactobacillus salivarius UCC118 3977539 YP_535240.1 CDS LSL_0344 NC_007929.1 374722 375282 D hypothetical protein 374722..375282 Lactobacillus salivarius UCC118 3977540 YP_535241.1 CDS murA NC_007929.1 375503 376774 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 375503..376774 Lactobacillus salivarius UCC118 3977541 YP_535242.1 CDS rho NC_007929.1 376785 378068 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 376785..378068 Lactobacillus salivarius UCC118 3977542 YP_535243.1 CDS rpmE2 NC_007929.1 378175 378423 D RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 type B 378175..378423 Lactobacillus salivarius UCC118 3977543 YP_535244.1 CDS LSL_0348 NC_007929.1 378509 379165 D hypothetical protein 378509..379165 Lactobacillus salivarius UCC118 3977544 YP_535245.1 CDS srmB NC_007929.1 379190 381556 R COG1199 [KL] Rad3-related DNA helicases; superfamily II DNA/RNA helicase complement(379190..381556) Lactobacillus salivarius UCC118 3977545 YP_535246.1 CDS LSL_0350 NC_007929.1 381839 382477 D hypothetical protein 381839..382477 Lactobacillus salivarius UCC118 3977546 YP_535247.1 CDS LSL_0351 NC_007929.1 382495 383532 D hypothetical protein 382495..383532 Lactobacillus salivarius UCC118 3977547 YP_535248.1 CDS LSL_0352 NC_007929.1 383543 385324 D hypothetical protein 383543..385324 Lactobacillus salivarius UCC118 3977548 YP_535249.1 CDS LSL_0353 NC_007929.1 385489 386802 D COG2252 [R] Permeases; guanine-hypoxanthine permease 385489..386802 Lactobacillus salivarius UCC118 3977549 YP_535250.1 CDS LSL_0354 NC_007929.1 386949 387719 D COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 386949..387719 Lactobacillus salivarius UCC118 3977950 YP_535251.1 CDS murF NC_007929.1 387857 389227 D COG0770 [M] UDP-N-acetylmuramyl pentapeptide synthase; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 387857..389227 Lactobacillus salivarius UCC118 3977951 YP_535252.1 CDS srmB NC_007929.1 389363 390841 D COG0513 [LKJ] Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase 389363..390841 Lactobacillus salivarius UCC118 3977952 YP_535253.1 CDS acpS NC_007929.1 390971 391378 D COG0736 [I] Phosphopantetheinyl transferase (holo-ACP synthase); Holo-[acyl-carrier protein] synthase 390971..391378 Lactobacillus salivarius UCC118 3977953 YP_535254.1 CDS alr NC_007929.1 391397 392512 D COG0787 [M] Alanine racemase; alanine racemase 391397..392512 Lactobacillus salivarius UCC118 3977954 YP_535255.1 CDS LSL_0359 NC_007929.1 392559 392807 D hypothetical protein 392559..392807 Lactobacillus salivarius UCC118 3977955 YP_535256.1 CDS LSL_0360 NC_007929.1 392823 393191 D COG2337 [T] Growth inhibitor; PemK family transcriptional regulator 392823..393191 Lactobacillus salivarius UCC118 3977956 YP_535257.1 CDS LSL_0361 NC_007929.1 393233 394069 R COG0011 [S] Uncharacterized conserved protein; hypothetical protein complement(393233..394069) Lactobacillus salivarius UCC118 3977957 YP_535258.1 CDS LSL_0362 NC_007929.1 394087 395178 R COG2404 [R] Predicted phosphohydrolase (DHH superfamily); phosphoesterase, DHH family protein complement(394087..395178) Lactobacillus salivarius UCC118 3977958 YP_535259.1 CDS def NC_007929.1 395291 395602 R COG0242 [J] N-formylmethionyl-tRNA deformylase; peptide deformylase complement(395291..395602) Lactobacillus salivarius UCC118 3977959 YP_535260.1 CDS LSL_0364 NC_007929.1 395701 396417 D hypothetical protein 395701..396417 Lactobacillus salivarius UCC118 3977960 YP_535261.1 CDS LSL_0365 NC_007929.1 396466 397395 R COG1597 [IR] Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase; hypothetical protein complement(396466..397395) Lactobacillus salivarius UCC118 3977961 YP_535262.1 CDS LSL_0366 NC_007929.1 397556 397783 D COG4892 [R] Predicted heme/steroid binding protein; hypothetical protein 397556..397783 Lactobacillus salivarius UCC118 3977962 YP_535263.1 CDS LSL_0367 NC_007929.1 397841 398419 R sigma-70 factor family protein complement(397841..398419) Lactobacillus salivarius UCC118 3977963 YP_535264.1 CDS recX NC_007929.1 398488 399291 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(398488..399291) Lactobacillus salivarius UCC118 3977964 YP_535265.1 CDS trmA NC_007929.1 399377 400756 D COG2265 [J] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; tRNA (Uracil-5-) -methyltransferase 399377..400756 Lactobacillus salivarius UCC118 3977965 YP_535266.1 CDS LSL_0370 NC_007929.1 400884 401429 D COG3557 [J] Uncharacterized domain/protein associated with RNAses G and E; hypothetical protein 400884..401429 Lactobacillus salivarius UCC118 3977966 YP_535267.1 CDS LSL_0371 NC_007929.1 401530 402660 D COG0628 [R] Predicted permease; hypothetical protein 401530..402660 Lactobacillus salivarius UCC118 3977967 YP_535268.1 CDS gpsA NC_007929.1 402745 403761 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 402745..403761 Lactobacillus salivarius UCC118 3977968 YP_535269.1 CDS tagH NC_007929.1 403895 405337 D COG1134 [GM] ABC-type polysaccharide/polyol phosphate transport system, ATPase component; teichoic acid translocation ATP-binding protein 403895..405337 Lactobacillus salivarius UCC118 3977969 YP_535270.1 CDS prfC NC_007929.1 405426 407003 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 405426..407003 Lactobacillus salivarius UCC118 3977970 YP_535271.1 CDS LSL_0375 NC_007929.1 407319 408092 D hypothetical protein 407319..408092 Lactobacillus salivarius UCC118 3977971 YP_535272.1 CDS lacZ NC_007929.1 408327 411350 D COG3250 [G] beta-galactosidase/beta-glucuronidase; beta-galactosidase 408327..411350 Lactobacillus salivarius UCC118 3977972 YP_535273.1 CDS galR NC_007929.1 415063 416061 R COG1522 [K] Transcriptional regulators; galactose operon repressor complement(415063..416061) Lactobacillus salivarius UCC118 3977975 YP_535274.1 CDS galK NC_007929.1 416233 417396 D catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase 416233..417396 Lactobacillus salivarius UCC118 3977976 YP_535275.1 CDS galE NC_007929.1 417424 418419 D COG1087 [M] UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 417424..418419 Lactobacillus salivarius UCC118 3977977 YP_535276.1 CDS LSL_0383 NC_007929.1 418438 419925 D catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism; galactose-1-phosphate uridylyltransferase 418438..419925 Lactobacillus salivarius UCC118 3977978 YP_535277.1 CDS LSL_0384 NC_007929.1 422195 423235 R hypothetical protein complement(422195..423235) Lactobacillus salivarius UCC118 3977980 YP_535278.1 CDS LSL_0385 NC_007929.1 423384 423659 R hypothetical protein complement(423384..423659) Lactobacillus salivarius UCC118 3977981 YP_535279.1 CDS clpE NC_007929.1 423785 425977 R COG0542 [O] ATPases with chaperone activity, ATP-binding subunit; ATP-dependent Clp protease ATP-binding subunit complement(423785..425977) Lactobacillus salivarius UCC118 3977982 YP_535280.1 CDS LSL_0387 NC_007929.1 426126 426320 D hypothetical protein 426126..426320 Lactobacillus salivarius UCC118 3977983 YP_535281.1 CDS ptsH NC_007929.1 426579 426845 D COG1925 [G] Phosphotransferase system, HPr-related proteins; phosphocarrier protein HPr 426579..426845 Lactobacillus salivarius UCC118 3977984 YP_535282.1 CDS ptsI NC_007929.1 426845 428566 D COG1080 [G] Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); phosphoenolpyruvate-protein phosphotransferase 426845..428566 Lactobacillus salivarius UCC118 3977985 YP_535283.1 CDS rfaG NC_007929.1 428743 429942 D COG0438 [M] Glycosyltransferase; glycosyltransferase 428743..429942 Lactobacillus salivarius UCC118 3977986 YP_535284.1 CDS rfaG NC_007929.1 429945 430955 D COG0438 [M] Glycosyltransferase; glycosyltransferase 429945..430955 Lactobacillus salivarius UCC118 3976530 YP_535285.1 CDS LSL_0392 NC_007929.1 430960 431979 D COG0392 [S] Predicted integral membrane protein; hypothetical protein 430960..431979 Lactobacillus salivarius UCC118 3976531 YP_535286.1 CDS LSL_0393 NC_007929.1 432107 432340 D COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 432107..432340 Lactobacillus salivarius UCC118 3976532 YP_535287.1 CDS LSL_0394 NC_007929.1 432452 434521 D COG1368 [M] Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily; sulfatase family protein 432452..434521 Lactobacillus salivarius UCC118 3976533 YP_535288.1 CDS pckA NC_007929.1 441138 442784 D COG1866 [C] Phosphoenolpyruvate carboxykinase (ATP); phosphoenolpyruvate carboxykinase [ATP] 441138..442784 Lactobacillus salivarius UCC118 3977087 YP_535289.1 CDS LSL_0396 NC_007929.1 442888 443649 D enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence; adaptor protein 442888..443649 Lactobacillus salivarius UCC118 3977088 YP_535290.1 CDS LSL_0397 NC_007929.1 443698 444597 D COG4469 [R] Competence protein; competence protein/transcription factor 443698..444597 Lactobacillus salivarius UCC118 3977089 YP_535291.1 CDS LSL_0398 NC_007929.1 444695 446512 D COG1164 [E] Oligoendopeptidase F; oligoendopeptidase F 444695..446512 Lactobacillus salivarius UCC118 3977090 YP_535292.1 CDS LSL_0399 NC_007929.1 446602 447207 R COG2761 [Q] Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis; hypothetical protein complement(446602..447207) Lactobacillus salivarius UCC118 3977091 YP_535293.1 CDS pstS NC_007929.1 447375 448229 D COG0226 [P] ABC-type phosphate transport system, periplasmic component; phosphate-binding protein 447375..448229 Lactobacillus salivarius UCC118 3977092 YP_535294.1 CDS pstC NC_007929.1 448240 449157 D COG0573 [P] ABC-type phosphate transport system, permease component; phosphate ABC transporter permease 448240..449157 Lactobacillus salivarius UCC118 3977093 YP_535295.1 CDS pstA NC_007929.1 449157 450047 D COG0573 [P] ABC-type phosphate transport system, permease component; phosphate ABC transporter permease 449157..450047 Lactobacillus salivarius UCC118 3977094 YP_535296.1 CDS pstB NC_007929.1 450052 450846 D COG1117 [P] ABC-type phosphate transport system, ATPase component; phosphate ABC transporter ATP-binding protein 450052..450846 Lactobacillus salivarius UCC118 3977095 YP_535297.1 CDS pstB NC_007929.1 450856 451611 D COG1117 [P] ABC-type phosphate transport system, ATPase component; phosphate ABC transporter ATP-binding protein 450856..451611 Lactobacillus salivarius UCC118 3977096 YP_535298.1 CDS phoU NC_007929.1 451624 452280 D COG0704 [P] Phosphate uptake regulator; phosphate transporter PhoU 451624..452280 Lactobacillus salivarius UCC118 3977097 YP_535299.1 CDS fba NC_007929.1 452407 453273 D COG0191 [G] Fructose/tagatose bisphosphate aldolase; fructose-bisphosphate aldolase 452407..453273 Lactobacillus salivarius UCC118 3977098 YP_535300.1 CDS LSL_0407 NC_007929.1 453375 454664 R COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase complement(453375..454664) Lactobacillus salivarius UCC118 3977099 YP_535301.1 CDS LSL_0408 NC_007929.1 454692 454895 D hypothetical protein 454692..454895 Lactobacillus salivarius UCC118 3977100 YP_535302.1 CDS LSL_0409 NC_007929.1 454914 455606 D COG0700 [S] Uncharacterized membrane protein; hypothetical protein 454914..455606 Lactobacillus salivarius UCC118 3977101 YP_535303.1 CDS LSL_0410 NC_007929.1 455624 456313 D COG0700 [S] Uncharacterized membrane protein; hypothetical protein 455624..456313 Lactobacillus salivarius UCC118 3977102 YP_535304.1 CDS LSL_0411 NC_007929.1 456624 456977 R hypothetical protein complement(456624..456977) Lactobacillus salivarius UCC118 3977103 YP_535305.1 CDS LSL_0412 NC_007929.1 457041 457640 D COG1272 [R] Predicted membrane protein, hemolysin III homolog; hypothetical protein 457041..457640 Lactobacillus salivarius UCC118 3977104 YP_535306.1 CDS LSL_0413 NC_007929.1 457759 458094 D COG0583 [K] Transcriptional regulator; ArsR family transcriptional regulator 457759..458094 Lactobacillus salivarius UCC118 3977105 YP_535307.1 CDS LSL_0414 NC_007929.1 458249 459538 R COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase complement(458249..459538) Lactobacillus salivarius UCC118 3977911 YP_535308.1 CDS rnhA NC_007929.1 459722 460381 D COG0328 [L] Ribonuclease HI; ribonuclease HI 459722..460381 Lactobacillus salivarius UCC118 3977912 YP_535309.1 CDS LSL_0416 NC_007929.1 460738 460896 R hypothetical protein complement(460738..460896) Lactobacillus salivarius UCC118 3977913 YP_535310.1 CDS LSL_0417 NC_007929.1 461276 461683 D COG4768 [R] Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain; hypothetical protein 461276..461683 Lactobacillus salivarius UCC118 3977914 YP_535311.1 CDS LSL_0418 NC_007929.1 461706 462155 D hypothetical protein 461706..462155 Lactobacillus salivarius UCC118 3977915 YP_535312.1 CDS pepQ NC_007929.1 462226 463329 R COG0006 [E] Xaa-Pro aminopeptidase; Xaa-Pro aminopeptidase complement(462226..463329) Lactobacillus salivarius UCC118 3977916 YP_535313.1 CDS ccpA NC_007929.1 463530 464537 D COG1522 [K] Transcriptional regulators; catabolite control protein A 463530..464537 Lactobacillus salivarius UCC118 3977917 YP_535314.1 CDS LSL_0421 NC_007929.1 464631 465119 D hypothetical protein 464631..465119 Lactobacillus salivarius UCC118 3977918 YP_535315.1 CDS LSL_0422 NC_007929.1 465226 465954 D COG0011 [S] Uncharacterized conserved protein; hypothetical protein 465226..465954 Lactobacillus salivarius UCC118 3977919 YP_535316.1 CDS rbsK NC_007929.1 466078 467001 D COG0524 [G] Sugar kinases, ribokinase family; ribokinase 466078..467001 Lactobacillus salivarius UCC118 3977920 YP_535317.1 CDS LSL_0424 NC_007929.1 467105 468088 D COG2804 [NU] type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; ComG operon protein 1 467105..468088 Lactobacillus salivarius UCC118 3977921 YP_535318.1 CDS LSL_0425 NC_007929.1 468024 469097 D COG1459 [NU] type II secretory pathway, component PulF; ComG operon protein 2 468024..469097 Lactobacillus salivarius UCC118 3977922 YP_535319.1 CDS LSL_0426 NC_007929.1 469097 469399 D ComG operon protein 3 469097..469399 Lactobacillus salivarius UCC118 3977923 YP_535320.1 CDS LSL_0427 NC_007929.1 469401 469823 D hypothetical protein 469401..469823 Lactobacillus salivarius UCC118 3977924 YP_535321.1 CDS LSL_0428 NC_007929.1 469804 470058 D hypothetical protein 469804..470058 Lactobacillus salivarius UCC118 3977925 YP_535322.1 CDS LSL_0429 NC_007929.1 470024 470194 D hypothetical protein 470024..470194 Lactobacillus salivarius UCC118 3977926 YP_535323.1 CDS LSL_0430 NC_007929.1 470228 470488 D hypothetical protein 470228..470488 Lactobacillus salivarius UCC118 3977927 YP_535324.1 CDS LSL_0431 NC_007929.1 470485 470766 D hypothetical protein 470485..470766 Lactobacillus salivarius UCC118 3977928 YP_535325.1 CDS LSL_0432 NC_007929.1 470841 471881 D COG0827 [L] Adenine-specific DNA methylase; adenine-specific methyltransferase 470841..471881 Lactobacillus salivarius UCC118 3977929 YP_535326.1 CDS LSL_0433 NC_007929.1 473536 474894 D COG1113 [E] Gamma-aminobutyrate permease and related permeases; amino acid permease 473536..474894 Lactobacillus salivarius UCC118 3977055 YP_535327.1 CDS LSL_0434 NC_007929.1 474993 475598 D COG4186 [R] Predicted phosphoesterase or phosphohydrolase; phosphoesterase 474993..475598 Lactobacillus salivarius UCC118 3977056 YP_535328.1 CDS LSL_0435 NC_007929.1 475676 476260 D COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 475676..476260 Lactobacillus salivarius UCC118 3977057 YP_535329.1 CDS nagD NC_007929.1 476271 477044 D COG0647 [G] Predicted sugar phosphatases of the HAD superfamily; N-acetylglucosamine catabolic protein 476271..477044 Lactobacillus salivarius UCC118 3977058 YP_535330.1 CDS LSL_0437 NC_007929.1 477044 477688 D COG0344 [S] Predicted membrane protein; hypothetical protein 477044..477688 Lactobacillus salivarius UCC118 3977059 YP_535331.1 CDS dedA NC_007929.1 477779 478420 R COG0586 [S] Uncharacterized membrane-associated protein; DedA family protein complement(477779..478420) Lactobacillus salivarius UCC118 3977060 YP_535332.1 CDS trxB NC_007929.1 478481 479506 R COG0492 [O] Thioredoxin reductase; thioredoxin reductase complement(478481..479506) Lactobacillus salivarius UCC118 3977061 YP_535333.1 CDS LSL_0440 NC_007929.1 479626 480036 D COG1098 [J] Predicted RNA binding protein (contains ribosomal protein S1 domain); polyribonucleotide nucleotidyltransferase 479626..480036 Lactobacillus salivarius UCC118 3977062 YP_535334.1 CDS metK NC_007929.1 487146 488336 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 487146..488336 Lactobacillus salivarius UCC118 3977436 YP_535335.1 CDS leuS NC_007929.1 488667 491084 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 488667..491084 Lactobacillus salivarius UCC118 3977437 YP_535336.1 CDS LSL_0443 NC_007929.1 491324 492661 D COG1113 [E] Gamma-aminobutyrate permease and related permeases; amino acid permease 491324..492661 Lactobacillus salivarius UCC118 3977438 YP_535337.1 CDS LSL_0444 NC_007929.1 492781 494427 D COG2244 [R] Membrane protein involved in the export of O-antigen and teichoic acid; export protein for polysaccharides and teichoic acids 492781..494427 Lactobacillus salivarius UCC118 3977608 YP_535338.1 CDS rsuA NC_007929.1 494432 495154 D COG1187 [J] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; ribosomal small subunit pseudouridine synthase A 494432..495154 Lactobacillus salivarius UCC118 3977609 YP_535339.1 CDS LSL_0446 NC_007929.1 495185 496036 R COG0061 [G] Predicted sugar kinase; sugar kinase complement(495185..496036) Lactobacillus salivarius UCC118 3977610 YP_535340.1 CDS LSL_0447 NC_007929.1 496152 497561 D COG0624 [E] acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; Xaa-His dipeptidase 496152..497561 Lactobacillus salivarius UCC118 3977611 YP_535341.1 CDS LSL_0448 NC_007929.1 497989 498273 R hypothetical protein complement(497989..498273) Lactobacillus salivarius UCC118 3977613 YP_535342.1 CDS fabA NC_007929.1 498676 499122 D COG0764 [I] 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases; (3R)-hydroxyacyl-ACP dehydratase 498676..499122 Lactobacillus salivarius UCC118 3977614 YP_535343.1 CDS LSL_0450 NC_007929.1 499199 499639 D COG1522 [K] Transcriptional regulators; MarR family transcriptional regulator 499199..499639 Lactobacillus salivarius UCC118 3977615 YP_535344.1 CDS fabH NC_007929.1 499656 500636 D COG0332 [I] 3-oxoacyl-[acyl-carrier-protein] synthase III; 3-oxoacyl-[acyl-carrier-protein] synthase III 499656..500636 Lactobacillus salivarius UCC118 3977616 YP_535345.1 CDS acpP NC_007929.1 500656 500898 D COG0236 [IQ] acyl carrier protein; acyl carrier protein 500656..500898 Lactobacillus salivarius UCC118 3977617 YP_535346.1 CDS fabD NC_007929.1 500912 501850 D COG0331 [I] (acyl-carrier-protein) S-malonyltransferase; malonyl-CoA-[acyl-carrier-protein] transacylase 500912..501850 Lactobacillus salivarius UCC118 3977618 YP_535347.1 CDS fabG NC_007929.1 501851 502582 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 501851..502582 Lactobacillus salivarius UCC118 3977619 YP_535348.1 CDS fabB NC_007929.1 502595 503833 D COG0304 [IQ] 3-oxoacyl-(acyl-carrier-protein) synthase; 3-oxoacyl-[acyl-carrier-protein] synthase 502595..503833 Lactobacillus salivarius UCC118 3977620 YP_535349.1 CDS accB NC_007929.1 503836 504285 D COG0511 [I] Biotin carboxyl carrier protein; biotin carboxyl carrier protein of acetyl-CoA carboxylase 503836..504285 Lactobacillus salivarius UCC118 3977621 YP_535350.1 CDS fabZ NC_007929.1 504290 504712 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 504290..504712 Lactobacillus salivarius UCC118 3977622 YP_535351.1 CDS accC NC_007929.1 504737 506116 D COG0439 [I] Biotin carboxylase; biotin carboxylase 504737..506116 Lactobacillus salivarius UCC118 3977623 YP_535352.1 CDS accD NC_007929.1 506103 506954 D COG0777 [I] acetyl-CoA carboxylase beta subunit; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta 506103..506954 Lactobacillus salivarius UCC118 3977624 YP_535353.1 CDS accA NC_007929.1 506955 507743 D COG0825 [I] acetyl-CoA carboxylase alpha subunit; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 506955..507743 Lactobacillus salivarius UCC118 3977625 YP_535354.1 CDS fabI NC_007929.1 507759 508517 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 507759..508517 Lactobacillus salivarius UCC118 3977626 YP_535355.1 CDS zwf NC_007929.1 508664 510148 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 508664..510148 Lactobacillus salivarius UCC118 3976838 YP_535356.1 CDS pgi NC_007929.1 511732 513084 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(511732..513084) Lactobacillus salivarius UCC118 3976840 YP_535357.1 CDS LSL_0465 NC_007929.1 513311 515494 D COG1368 [M] Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily; sulfatase family protein 513311..515494 Lactobacillus salivarius UCC118 3976841 YP_535358.1 CDS glpF NC_007929.1 515606 516343 R COG0580 [G] Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family); glycerol uptake facilitator protein complement(515606..516343) Lactobacillus salivarius UCC118 3976842 YP_535359.1 CDS LSL_0467 NC_007929.1 516557 517021 D COG0517 [R] FOG: CBS domain; CBS domain-containing protein 516557..517021 Lactobacillus salivarius UCC118 3976843 YP_535360.1 CDS LSL_0468 NC_007929.1 517047 517751 D COG2171 [E] Tetrahydrodipicolinate N-succinyltransferase; tetrahydrodipicolinate N-acetyltransferase 517047..517751 Lactobacillus salivarius UCC118 3976844 YP_535361.1 CDS LSL_0469 NC_007929.1 517868 519013 D COG1473 [R] Metal-dependent amidase/aminoacylase/carboxypeptidase; N-acetyldiaminopimelate deacetylase 517868..519013 Lactobacillus salivarius UCC118 3976845 YP_535362.1 CDS LSL_0470 NC_007929.1 519110 520000 R COG0668 [M] Small-conductance mechanosensitive channel; mechanosensitive ion channel complement(519110..520000) Lactobacillus salivarius UCC118 3976846 YP_535363.1 CDS LSL_0471 NC_007929.1 520190 520855 D COG0583 [K] Transcriptional regulator; Crp family transcriptional regulator 520190..520855 Lactobacillus salivarius UCC118 3976847 YP_535364.1 CDS mrcA NC_007929.1 520935 523079 D COG0744 [M] Membrane carboxypeptidase (penicillin-binding protein); multimodular transpeptidase-transglycosylase PBP 2A 520935..523079 Lactobacillus salivarius UCC118 3976848 YP_535365.1 CDS LSL_0473 NC_007929.1 523125 523469 D COG0011 [S] Uncharacterized conserved protein; hypothetical protein 523125..523469 Lactobacillus salivarius UCC118 3976849 YP_535366.1 CDS LSL_0474 NC_007929.1 523562 524509 D COG3481 [R] Predicted HD-superfamily hydrolase; CMP-binding factor 523562..524509 Lactobacillus salivarius UCC118 3976850 YP_535367.1 CDS prsA NC_007929.1 524582 525472 R cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein; peptidylprolyl isomerase complement(524582..525472) Lactobacillus salivarius UCC118 3976851 YP_535368.1 CDS LSL_0476 NC_007929.1 525592 525870 R hypothetical protein complement(525592..525870) Lactobacillus salivarius UCC118 3976852 YP_535369.1 CDS LSL_0477 NC_007929.1 525874 526302 R COG0537 [FGR] Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases; bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) complement(525874..526302) Lactobacillus salivarius UCC118 3976853 YP_535370.1 CDS LSL_0478 NC_007929.1 526423 527163 D COG1131 [V] ABC-type multidrug transport system, ATPase component; ABC transporter, ATP-binding protein 526423..527163 Lactobacillus salivarius UCC118 3976854 YP_535371.1 CDS LSL_0479 NC_007929.1 527156 528349 D COG4473 [U] Predicted ABC-type exoprotein transport system, permease component; protein ecsB 527156..528349 Lactobacillus salivarius UCC118 3976855 YP_535372.1 CDS LSL_0480 NC_007929.1 528412 529200 D COG0510 [M] Predicted choline kinase involved in LPS biosynthesis; phosphotransferase family protein 528412..529200 Lactobacillus salivarius UCC118 3977931 YP_535373.1 CDS LSL_0481 NC_007929.1 529276 529914 D COG0220 [R] Predicted S-adenosylmethionine-dependent methyltransferase; tRNA (m(7)G46) methyltransferase 529276..529914 Lactobacillus salivarius UCC118 3977932 YP_535374.1 CDS LSL_0482 NC_007929.1 529897 530289 R hypothetical protein complement(529897..530289) Lactobacillus salivarius UCC118 3977933 YP_535375.1 CDS trxA NC_007929.1 530363 530680 D COG0526 [OC] Thiol-disulfide isomerase and thioredoxins; thioredoxin 530363..530680 Lactobacillus salivarius UCC118 3977934 YP_535376.1 CDS LSL_0484 NC_007929.1 530707 531357 D COG0073 [R] EMAP domain; tRNA-binding domain-containing protein 530707..531357 Lactobacillus salivarius UCC118 3977935 YP_535377.1 CDS murC NC_007929.1 533809 535140 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 533809..535140 Lactobacillus salivarius UCC118 3977937 YP_535378.1 CDS maoC NC_007929.1 535249 535689 D COG2030 [I] acyl dehydratase; dehydrogenase 535249..535689 Lactobacillus salivarius UCC118 3977938 YP_535379.1 CDS LSL_0487 NC_007929.1 535711 536424 D COG0670 [R] Integral membrane protein, interacts with FtsH; integral membrane protein 535711..536424 Lactobacillus salivarius UCC118 3977939 YP_535380.1 CDS polA NC_007929.1 536545 539223 D COG0749 [L] DNA polymerase I - 3'-5' exonuclease and polymerase domains; DNA polymerase I 536545..539223 Lactobacillus salivarius UCC118 3977940 YP_535381.1 CDS nei NC_007929.1 539236 540066 D COG0266 [L] Formamidopyrimidine-DNA glycosylase; formamidopyrimidine-DNA glycosylase 539236..540066 Lactobacillus salivarius UCC118 3977941 YP_535382.1 CDS coaE NC_007929.1 540063 540668 D COG0237 [H] Dephospho-CoA kinase; dephospho-CoA kinase 540063..540668 Lactobacillus salivarius UCC118 3977942 YP_535383.1 CDS nrdR NC_007929.1 540683 541156 D COG1327 [K] Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains; NrdR family transcriptional regulator 540683..541156 Lactobacillus salivarius UCC118 3977943 YP_535384.1 CDS dnaB NC_007929.1 541166 542512 D COG3611 [L] Replication initiation/membrane attachment protein; chromosome replication initiation / membrane attachment protein 541166..542512 Lactobacillus salivarius UCC118 3977944 YP_535385.1 CDS dnaI NC_007929.1 542522 543451 D Primosomal protein that may act to load helicase DnaC during DNA replication; primosomal protein DnaI 542522..543451 Lactobacillus salivarius UCC118 3977945 YP_535386.1 CDS thrS NC_007929.1 543759 545708 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 543759..545708 Lactobacillus salivarius UCC118 3977946 YP_535387.1 CDS infC NC_007929.1 545916 546440 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 545916..546440 Lactobacillus salivarius UCC118 3977947 YP_535388.1 CDS rpmI NC_007929.1 546477 546677 D COG0291 [J] Ribosomal protein L35; 50S ribosomal protein L35 546477..546677 Lactobacillus salivarius UCC118 3977948 YP_535389.1 CDS rplT NC_007929.1 546770 547132 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 546770..547132 Lactobacillus salivarius UCC118 3977949 YP_535390.1 CDS LSL_0498 NC_007929.1 547229 548518 R COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase complement(547229..548518) Lactobacillus salivarius UCC118 3977570 YP_535391.1 CDS LSL_0499 NC_007929.1 548790 549329 D COG2179 [R] Predicted hydrolase of the HAD superfamily; HAD superfamily hydrolase 548790..549329 Lactobacillus salivarius UCC118 3977571 YP_535392.1 CDS LSL_0500 NC_007929.1 549316 550437 D in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis; GTP-binding protein YqeH 549316..550437 Lactobacillus salivarius UCC118 3977572 YP_535393.1 CDS LSL_0501 NC_007929.1 550450 550770 D COG1534 [J] Predicted RNA-binding protein containing KH domain, possibly ribosomal protein; hypothetical protein 550450..550770 Lactobacillus salivarius UCC118 3977573 YP_535394.1 CDS nadD NC_007929.1 550789 551421 D COG1057 [H] Nicotinic acid mononucleotide adenylyltransferase; nicotinate-nucleotide adenylyltransferase 550789..551421 Lactobacillus salivarius UCC118 3977574 YP_535395.1 CDS LSL_0503 NC_007929.1 551414 552013 D COG1713 [H] Predicted HD superfamily hydrolase involved in NAD metabolism; hypothetical protein 551414..552013 Lactobacillus salivarius UCC118 3977575 YP_535396.1 CDS LSL_0504 NC_007929.1 552036 552389 D COG0799 [S] Uncharacterized homolog of plant Iojap protein; Iojap-related protein 552036..552389 Lactobacillus salivarius UCC118 3977576 YP_535397.1 CDS LSL_0505 NC_007929.1 553146 554288 D COG1019 [R] Predicted nucleotidyltransferase; hypothetical protein 553146..554288 Lactobacillus salivarius UCC118 3977578 YP_535398.1 CDS LSL_0506 NC_007929.1 554365 554910 D COG1399 [R] Predicted metal-binding, possibly nucleic acid-binding protein; hypothetical protein 554365..554910 Lactobacillus salivarius UCC118 3977579 YP_535399.1 CDS rpmF NC_007929.1 554993 555169 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 554993..555169 Lactobacillus salivarius UCC118 3977580 YP_535400.1 CDS plsC NC_007929.1 555328 555951 R COG0204 [I] 1-acyl-sn-glycerol-3-phosphate acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(555328..555951) Lactobacillus salivarius UCC118 3977581 YP_535401.1 CDS LSL_0509 NC_007929.1 556041 556799 D COG4122 [R] Predicted O-methyltransferase; methyltransferase 556041..556799 Lactobacillus salivarius UCC118 3977582 YP_535402.1 CDS LSL_0510 NC_007929.1 556783 557070 D COG2827 [L] Predicted endonuclease containing a URI domain; hypothetical protein 556783..557070 Lactobacillus salivarius UCC118 3977583 YP_535403.1 CDS rpsB NC_007929.1 557234 558031 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 557234..558031 Lactobacillus salivarius UCC118 3977584 YP_535404.1 CDS tsf NC_007929.1 558125 559000 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 558125..559000 Lactobacillus salivarius UCC118 3977585 YP_535405.1 CDS LSL_0513 NC_007929.1 559288 559608 D hypothetical protein 559288..559608 Lactobacillus salivarius UCC118 3977586 YP_535406.1 CDS LSL_0514 NC_007929.1 559675 560397 R COG1428 [F] Deoxynucleoside kinases; deoxyguanosine kinase complement(559675..560397) Lactobacillus salivarius UCC118 3977587 YP_535407.1 CDS purE NC_007929.1 560602 561090 D COG0041 [F] Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit 560602..561090 Lactobacillus salivarius UCC118 3977588 YP_535408.1 CDS purK NC_007929.1 561083 562204 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 561083..562204 Lactobacillus salivarius UCC118 3977222 YP_535409.1 CDS purB NC_007929.1 562216 563511 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 562216..563511 Lactobacillus salivarius UCC118 3977223 YP_535410.1 CDS LSL_0518 NC_007929.1 563625 564602 D COG3049 [M] Penicillin V acylase and related amidases; choloylglycine hydrolase 563625..564602 Lactobacillus salivarius UCC118 3977224 YP_535411.1 CDS LSL_0519 NC_007929.1 564956 565783 D hypothetical protein 564956..565783 Lactobacillus salivarius UCC118 3977225 YP_535412.1 CDS LSL_0520 NC_007929.1 565776 566123 D hypothetical protein 565776..566123 Lactobacillus salivarius UCC118 3977226 YP_535413.1 CDS LSL_0521 NC_007929.1 566127 566771 D hypothetical protein 566127..566771 Lactobacillus salivarius UCC118 3977227 YP_535414.1 CDS LSL_0522 NC_007929.1 567551 568237 D COG0745 [TK] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two-component response regulator 567551..568237 Lactobacillus salivarius UCC118 3977229 YP_535415.1 CDS csrS NC_007929.1 568257 569747 D COG0642 [T] signal transduction histidine kinase; transmembrane histidine kinase 568257..569747 Lactobacillus salivarius UCC118 3977230 YP_535416.1 CDS yidC NC_007929.1 569948 570871 R COG0706 [U] Preprotein translocase subunit YidC; 60 kDa inner membrane protein complement(569948..570871) Lactobacillus salivarius UCC118 3977231 YP_535417.1 CDS acyP NC_007929.1 570979 571251 R COG1254 [C] acylphosphatases; acylphosphatase complement(570979..571251) Lactobacillus salivarius UCC118 3977232 YP_535418.1 CDS LSL_0526 NC_007929.1 571364 572527 D COG3425 [I] 3-hydroxy-3-methylglutaryl CoA synthase; hydroxymethylglutaryl-CoA synthase 571364..572527 Lactobacillus salivarius UCC118 3977233 YP_535419.1 CDS LSL_0527 NC_007929.1 572638 573519 D hypothetical protein 572638..573519 Lactobacillus salivarius UCC118 3977234 YP_535420.1 CDS LSL_0528 NC_007929.1 573521 574516 D hypothetical protein 573521..574516 Lactobacillus salivarius UCC118 3977235 YP_535421.1 CDS LSL_0529 NC_007929.1 574547 574999 D hypothetical protein 574547..574999 Lactobacillus salivarius UCC118 3977236 YP_535422.1 CDS efp NC_007929.1 575133 575690 D COG0231 [J] Translation elongation factor P (EF-P); translation initiation factor 5A (eIF-5A); protein translation elongation factor P 575133..575690 Lactobacillus salivarius UCC118 3977237 YP_535423.1 CDS LSL_0531 NC_007929.1 575707 576129 D COG0718 [S] Uncharacterized protein conserved in bacteria; alkaline shock protein 575707..576129 Lactobacillus salivarius UCC118 3977238 YP_535424.1 CDS nusB NC_007929.1 576129 576524 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 576129..576524 Lactobacillus salivarius UCC118 3977239 YP_535425.1 CDS folD NC_007929.1 576669 577526 D COG0190 [H] 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase 576669..577526 Lactobacillus salivarius UCC118 3976491 YP_535426.1 CDS xseA NC_007929.1 577519 578859 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 577519..578859 Lactobacillus salivarius UCC118 3976492 YP_535427.1 CDS xseB NC_007929.1 578859 579086 D COG1722 [L] Exonuclease VII small subunit; exodeoxyribonuclease VII small subunit 578859..579086 Lactobacillus salivarius UCC118 3976493 YP_535428.1 CDS ispA NC_007929.1 579076 579969 D COG0142 [H] Geranylgeranyl pyrophosphate synthase; geranyltranstransferase 579076..579969 Lactobacillus salivarius UCC118 3976494 YP_535429.1 CDS LSL_0537 NC_007929.1 579972 580799 D COG1189 [J] Predicted rRNA methylase; hemolysin 579972..580799 Lactobacillus salivarius UCC118 3976495 YP_535430.1 CDS argR NC_007929.1 580824 581282 D COG1438 [K] Arginine repressor; arginine repressor 580824..581282 Lactobacillus salivarius UCC118 3976496 YP_535431.1 CDS recN NC_007929.1 581287 582954 D COG0419 [L] ATPase involved in DNA repair; DNA repair protein 581287..582954 Lactobacillus salivarius UCC118 3976497 YP_535432.1 CDS lexA NC_007929.1 583018 583638 R COG1974 [KT] SOS-response transcriptional repressors (RecA-mediated autopeptidases); LexA repressor complement(583018..583638) Lactobacillus salivarius UCC118 3976498 YP_535433.1 CDS LSL_0541 NC_007929.1 583785 584039 D COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 583785..584039 Lactobacillus salivarius UCC118 3976499 YP_535434.1 CDS LSL_0542 NC_007929.1 584166 584390 D COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 584166..584390 Lactobacillus salivarius UCC118 3976500 YP_535435.1 CDS LSL_0543 NC_007929.1 584473 585063 D COG0218 [R] Predicted GTPase; GTP-binding protein 584473..585063 Lactobacillus salivarius UCC118 3976501 YP_535436.1 CDS LSL_0544 NC_007929.1 585081 585380 D COG1694 [R] Predicted pyrophosphatase; hypothetical protein 585081..585380 Lactobacillus salivarius UCC118 3976502 YP_535437.1 CDS LSL_0545 NC_007929.1 585475 587298 D hypothetical protein 585475..587298 Lactobacillus salivarius UCC118 3976503 YP_535438.1 CDS LSL_0546 NC_007929.1 587362 588741 D COG0675 [L] Transposase and inactivated derivatives; IS3 family transposase 587362..588741 Lactobacillus salivarius UCC118 3976504 YP_535439.1 CDS LSL_0547 NC_007929.1 588945 591074 D COG0419 [L] ATPase involved in DNA repair; hypothetical protein 588945..591074 Lactobacillus salivarius UCC118 3976505 YP_535440.1 CDS rpmG NC_007929.1 591222 591371 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 591222..591371 Lactobacillus salivarius UCC118 3976506 YP_535441.1 CDS LSL_0549 NC_007929.1 591426 591974 D COG0212 [H] 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 591426..591974 Lactobacillus salivarius UCC118 3976507 YP_535442.1 CDS LSL_0550 NC_007929.1 591988 592650 D COG0705 [R] Uncharacterized membrane protein (homolog of Drosophila rhomboid); rhomboid family integral membrane protein 591988..592650 Lactobacillus salivarius UCC118 3976508 YP_535443.1 CDS LSL_0551 NC_007929.1 592690 592929 D COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 592690..592929 Lactobacillus salivarius UCC118 3976509 YP_535444.1 CDS LSL_0552 NC_007929.1 592926 593888 D COG1940 [KG] Transcriptional regulator/sugar kinase; glucokinase 592926..593888 Lactobacillus salivarius UCC118 3976510 YP_535445.1 CDS LSL_0553 NC_007929.1 593931 594344 D COG0607 [P] Rhodanese-related sulfurtransferase; hypothetical protein 593931..594344 Lactobacillus salivarius UCC118 3976511 YP_535446.1 CDS LSL_0554 NC_007929.1 594414 594590 R hypothetical protein complement(594414..594590) Lactobacillus salivarius UCC118 3976512 YP_535447.1 CDS miaA NC_007929.1 594722 595645 D COG0324 [J] tRNA delta(2)-isopentenylpyrophosphate transferase; tRNA delta(2)-isopentenylpyrophosphate transferase 594722..595645 Lactobacillus salivarius UCC118 3976513 YP_535448.1 CDS LSL_0556 NC_007929.1 595667 596929 D COG4100 [P] Cystathionine beta-lyase family protein involved in aluminum resistance; aluminum resistance protein 595667..596929 Lactobacillus salivarius UCC118 3976514 YP_535449.1 CDS glnR NC_007929.1 597020 597406 D COG0640 [K] Predicted transcriptional regulators; glutamine synthetase repressor 597020..597406 Lactobacillus salivarius UCC118 3976515 YP_535450.1 CDS glnA NC_007929.1 597436 598779 D COG0174 [E] Glutamine synthetase; glutamine synthetase 597436..598779 Lactobacillus salivarius UCC118 3976516 YP_535451.1 CDS ada NC_007929.1 599192 599653 D COG0350 [L] Methylated DNA-protein cysteine methyltransferase; O6-methylguanine-DNA methyltransferase 599192..599653 Lactobacillus salivarius UCC118 3976517 YP_535452.1 CDS LSL_0560 NC_007929.1 599740 600117 D COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 599740..600117 Lactobacillus salivarius UCC118 3976518 YP_535453.1 CDS pyrH NC_007929.1 600230 600952 D COG0528 [F] Uridylate kinase; uridylate kinase 600230..600952 Lactobacillus salivarius UCC118 3976519 YP_535454.1 CDS frr NC_007929.1 600955 601518 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 600955..601518 Lactobacillus salivarius UCC118 3976520 YP_535455.1 CDS uppS NC_007929.1 601653 602435 D COG0020 [I] Undecaprenyl pyrophosphate synthase; undecaprenyl pyrophosphate synthetase 601653..602435 Lactobacillus salivarius UCC118 3976521 YP_535456.1 CDS cdsA NC_007929.1 602438 603226 D COG0575 [I] CDP-diglyceride synthetase; phosphatidate cytidylyltransferase 602438..603226 Lactobacillus salivarius UCC118 3976522 YP_535457.1 CDS LSL_0565 NC_007929.1 603251 604528 D COG0750 [M] Predicted membrane-associated Zn-dependent proteases 1; M50 family membrane endopeptidase 603251..604528 Lactobacillus salivarius UCC118 3976523 YP_535458.1 CDS proS NC_007929.1 604579 606294 D COG0442 [J] Prolyl-tRNA synthetase; prolyl-tRNA synthetase 604579..606294 Lactobacillus salivarius UCC118 3976524 YP_535459.1 CDS polC NC_007929.1 606391 610725 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 606391..610725 Lactobacillus salivarius UCC118 3976525 YP_535460.1 CDS LSL_0568 NC_007929.1 610934 611407 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 610934..611407 Lactobacillus salivarius UCC118 3976526 YP_535461.1 CDS nusA NC_007929.1 611433 612560 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 611433..612560 Lactobacillus salivarius UCC118 3976527 YP_535462.1 CDS LSL_0570 NC_007929.1 612563 612862 D COG2740 [K] Predicted nucleic-acid-binding protein implicated in transcription termination; hypothetical protein 612563..612862 Lactobacillus salivarius UCC118 3976528 YP_535463.1 CDS rPL NC_007929.1 612852 613157 D COG1358 [J] Ribosomal protein HS6-type (S12/L30/L7a); 50S ribosomal protein L7AE 612852..613157 Lactobacillus salivarius UCC118 3976529 YP_535464.1 CDS infB NC_007929.1 613229 615442 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 613229..615442 Lactobacillus salivarius UCC118 3976702 YP_535465.1 CDS rbfA NC_007929.1 615466 615825 D COG0858 [J] Ribosome-binding factor A; ribosome-binding factor A 615466..615825 Lactobacillus salivarius UCC118 3976703 YP_535466.1 CDS truB NC_007929.1 615895 616803 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 615895..616803 Lactobacillus salivarius UCC118 3976704 YP_535467.1 CDS ribF NC_007929.1 616816 617772 D COG0196 [H] FAD synthase; riboflavin kinase / FMN adenylyltransferase 616816..617772 Lactobacillus salivarius UCC118 3976705 YP_535468.1 CDS hrcA NC_007929.1 617893 618945 D Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 617893..618945 Lactobacillus salivarius UCC118 3976706 YP_535469.1 CDS grpE NC_007929.1 618942 619538 D COG0576 [O] Molecular chaperone GrpE (heat shock protein); GrpE protein 618942..619538 Lactobacillus salivarius UCC118 3976707 YP_535470.1 CDS dnaK NC_007929.1 619577 621424 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 619577..621424 Lactobacillus salivarius UCC118 3976708 YP_535471.1 CDS dnaJ NC_007929.1 621565 622698 D COG0484 [O] DnaJ-class molecular chaperone with C-terminal Zn finger domain; chaperone protein 621565..622698 Lactobacillus salivarius UCC118 3976709 YP_535472.1 CDS lepA NC_007929.1 622843 624672 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 622843..624672 Lactobacillus salivarius UCC118 3976710 YP_535473.1 CDS glnP NC_007929.1 625291 626748 D COG0834 [ET] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; glutamine-binding protein / glutamine transport system permease 625291..626748 Lactobacillus salivarius UCC118 3976712 YP_535474.1 CDS glnQ NC_007929.1 626748 627488 D COG1126 [E] ABC-type polar amino acid transport system, ATPase component; glutamine transport ATP-binding protein 626748..627488 Lactobacillus salivarius UCC118 3976713 YP_535475.1 CDS LSL_0583 NC_007929.1 627569 627898 R hypothetical protein complement(627569..627898) Lactobacillus salivarius UCC118 3976714 YP_535476.1 CDS ampC NC_007929.1 627991 628992 D COG1680 [V] beta-lactamase class C and other penicillin binding proteins; beta-lactamase family protein 627991..628992 Lactobacillus salivarius UCC118 3976715 YP_535477.1 CDS LSL_0585 NC_007929.1 629058 629855 R COG0675 [L] Transposase and inactivated derivatives; IS3 family transposase complement(629058..629855) Lactobacillus salivarius UCC118 3976716 YP_535478.1 CDS LSL_0586 NC_007929.1 629972 630640 R COG0675 [L] Transposase and inactivated derivatives; IS3 family transposase complement(629972..630640) Lactobacillus salivarius UCC118 3976717 YP_535479.1 CDS LSL_0587 NC_007929.1 630745 631449 R COG0121 [R] Predicted glutamine amidotransferase; cobyric acid synthase complement(630745..631449) Lactobacillus salivarius UCC118 3976718 YP_535480.1 CDS murE NC_007929.1 631452 632801 R COG0769 [M] UDP-N-acetylmuramyl tripeptide synthase; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(631452..632801) Lactobacillus salivarius UCC118 3976719 YP_535481.1 CDS tdk NC_007929.1 633074 633679 D catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 633074..633679 Lactobacillus salivarius UCC118 3976720 YP_535482.1 CDS prfA NC_007929.1 633672 634754 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 633672..634754 Lactobacillus salivarius UCC118 3977184 YP_535483.1 CDS LSL_0591 NC_007929.1 634747 635586 D COG2890 [J] Methylase of polypeptide chain release factors; peptide release factor-glutamine N5-methyltransferase 634747..635586 Lactobacillus salivarius UCC118 3977185 YP_535484.1 CDS LSL_0592 NC_007929.1 635604 636614 D COG0009 [J] translation factor (SUA5); Sua5/YciO/YrdC/YwlC family protein 635604..636614 Lactobacillus salivarius UCC118 3977186 YP_535485.1 CDS upp NC_007929.1 636708 637337 D Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 636708..637337 Lactobacillus salivarius UCC118 3977187 YP_535486.1 CDS atpB NC_007929.1 637568 638281 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 637568..638281 Lactobacillus salivarius UCC118 3977188 YP_535487.1 CDS atpE NC_007929.1 638300 638524 D COG0636 [C] F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K; ATP synthase subunit C 638300..638524 Lactobacillus salivarius UCC118 3977189 YP_535488.1 CDS atpF NC_007929.1 638577 639104 D COG0711 [C] F0F1-type ATP synthase, subunit b; ATP synthase subunit B 638577..639104 Lactobacillus salivarius UCC118 3977190 YP_535489.1 CDS atpH NC_007929.1 639091 639633 D COG0712 [C] F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein); ATP synthase subunit delta 639091..639633 Lactobacillus salivarius UCC118 3977191 YP_535490.1 CDS atpA NC_007929.1 639654 641165 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 639654..641165 Lactobacillus salivarius UCC118 3977192 YP_535491.1 CDS atpG NC_007929.1 641185 642114 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 641185..642114 Lactobacillus salivarius UCC118 3977193 YP_535492.1 CDS atpD NC_007929.1 642139 643545 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 642139..643545 Lactobacillus salivarius UCC118 3977194 YP_535493.1 CDS atpC NC_007929.1 643560 643979 D COG0355 [C] F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit); ATP synthase epsilon chain 643560..643979 Lactobacillus salivarius UCC118 3977195 YP_535494.1 CDS LSL_0602 NC_007929.1 644116 644346 D hypothetical protein 644116..644346 Lactobacillus salivarius UCC118 3977196 YP_535495.1 CDS murA NC_007929.1 644366 645691 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 644366..645691 Lactobacillus salivarius UCC118 3977197 YP_535496.1 CDS mreB NC_007929.1 645849 646835 D COG1077 [D] Actin-like ATPase involved in cell morphogenesis; rod shape-determining protein MreB 645849..646835 Lactobacillus salivarius UCC118 3977198 YP_535497.1 CDS LSL_0605 NC_007929.1 646810 647073 D COG0011 [S] Uncharacterized conserved protein; hypothetical protein 646810..647073 Lactobacillus salivarius UCC118 3977199 YP_535498.1 CDS LSL_0606 NC_007929.1 647085 647306 D hypothetical protein 647085..647306 Lactobacillus salivarius UCC118 3977200 YP_535499.1 CDS ftsW NC_007929.1 647378 648580 D COG0772 [D] Bacterial cell division membrane protein; rod shape determining protein 647378..648580 Lactobacillus salivarius UCC118 3977201 YP_535500.1 CDS arsC NC_007929.1 648605 648958 D COG1393 [P] Arsenate reductase and related proteins, glutaredoxin family; arsenate reductase 648605..648958 Lactobacillus salivarius UCC118 3977202 YP_535501.1 CDS LSL_0609 NC_007929.1 649111 650400 R COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase complement(649111..650400) Lactobacillus salivarius UCC118 3977165 YP_535502.1 CDS LSL_0610 NC_007929.1 650629 651483 D hypothetical protein 650629..651483 Lactobacillus salivarius UCC118 3977166 YP_535503.1 CDS gmk NC_007929.1 651605 652222 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 651605..652222 Lactobacillus salivarius UCC118 3977167 YP_535504.1 CDS LSL_0612 NC_007929.1 652224 652421 D DNA-directed RNA polymerase omega chain 652224..652421 Lactobacillus salivarius UCC118 3977168 YP_535505.1 CDS LSL_0613 NC_007929.1 652566 653765 D COG0452 [H] Phosphopantothenoylcysteine synthetase/decarboxylase; phosphopantothenoylcysteine decarboxylase / phosphopantothenate-cysteine ligase 652566..653765 Lactobacillus salivarius UCC118 3977169 YP_535506.1 CDS LSL_0613b NC_007929.1 653814 656192 D primosomal protein n-prim 653814..656192 Lactobacillus salivarius UCC118 3977170 YP_535507.1 CDS fmt NC_007929.1 656210 657166 D COG0223 [J] Methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 656210..657166 Lactobacillus salivarius UCC118 3977171 YP_535508.1 CDS LSL_0615 NC_007929.1 657156 658493 D COG0144 [J] tRNA and rRNA cytosine-C5-methylases; 16S rRNA m(5)C 967 methyltransferase 657156..658493 Lactobacillus salivarius UCC118 3977172 YP_535509.1 CDS LSL_0616 NC_007929.1 658506 659249 D COG0631 [T] Serine/threonine protein phosphatase; protein phosphatase 2C 658506..659249 Lactobacillus salivarius UCC118 3977173 YP_535510.1 CDS LSL_0617 NC_007929.1 661023 661913 D COG1160 [R] Predicted GTPases; GTPase 661023..661913 Lactobacillus salivarius UCC118 3977175 YP_535511.1 CDS LSL_0618 NC_007929.1 661910 662572 D COG1564 [H] Thiamine pyrophosphokinase; thiamin pyrophosphokinase 661910..662572 Lactobacillus salivarius UCC118 3977176 YP_535512.1 CDS rpmB NC_007929.1 662644 662829 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(662644..662829) Lactobacillus salivarius UCC118 3977177 YP_535513.1 CDS LSL_0620 NC_007929.1 663094 663456 D COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 663094..663456 Lactobacillus salivarius UCC118 3977178 YP_535514.1 CDS LSL_0621 NC_007929.1 663499 665199 D COG1461 [R] Predicted kinase related to dihydroxyacetone kinase; hypothetical protein 663499..665199 Lactobacillus salivarius UCC118 3977179 YP_535515.1 CDS recG NC_007929.1 665280 667310 D COG1200 [LK] RecG-like helicase; ATP-dependent DNA helicase 665280..667310 Lactobacillus salivarius UCC118 3977180 YP_535516.1 CDS plsX NC_007929.1 667323 668324 D COG0416 [I] Fatty acid/phospholipid biosynthesis enzyme; Fatty acid/phospholipid synthesis protein 667323..668324 Lactobacillus salivarius UCC118 3977181 YP_535517.1 CDS acpP NC_007929.1 668401 668643 D COG0236 [IQ] acyl carrier protein; acyl carrier protein 668401..668643 Lactobacillus salivarius UCC118 3977182 YP_535518.1 CDS rnc NC_007929.1 668797 669495 D COG0571 [K] dsRNA-specific ribonuclease; ribonuclease III 668797..669495 Lactobacillus salivarius UCC118 3977183 YP_535519.1 CDS smc NC_007929.1 669510 673046 D COG1196 [D] Chromosome segregation ATPases; chromosome partition protein 669510..673046 Lactobacillus salivarius UCC118 3977296 YP_535520.1 CDS ftsY NC_007929.1 673058 674329 D COG0541 [U] signal recognition particle GTPase; cell division protein 673058..674329 Lactobacillus salivarius UCC118 3977297 YP_535521.1 CDS LSL_0628 NC_007929.1 674348 674686 D COG0718 [S] Uncharacterized protein conserved in bacteria; signal recognition particle associated protein 674348..674686 Lactobacillus salivarius UCC118 3977298 YP_535522.1 CDS ffh NC_007929.1 674693 676141 D COG0541 [U] signal recognition particle GTPase; signal recognition particle protein 674693..676141 Lactobacillus salivarius UCC118 3977299 YP_535523.1 CDS rpsP NC_007929.1 676236 676511 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 676236..676511 Lactobacillus salivarius UCC118 3977300 YP_535524.1 CDS LSL_0631 NC_007929.1 676521 676766 D COG1837 [R] Predicted RNA-binding protein (contains KH domain); RNA binding protein 676521..676766 Lactobacillus salivarius UCC118 3977301 YP_535525.1 CDS rimM NC_007929.1 676851 677357 D COG0806 [J] RimM protein, required for 16S rRNA processing; 16S rRNA processing protein 676851..677357 Lactobacillus salivarius UCC118 3977302 YP_535526.1 CDS trmD NC_007929.1 677360 678112 D COG0336 [J] tRNA-(guanine-N1)-methyltransferase; tRNA (guanine-N(1)-)-methyltransferase 677360..678112 Lactobacillus salivarius UCC118 3977303 YP_535527.1 CDS LSL_0634 NC_007929.1 678099 678695 D COG1247 [M] Sortase and related acyltransferases; phosphinothricin N-acetyltransferase 678099..678695 Lactobacillus salivarius UCC118 3977304 YP_535528.1 CDS LSL_0635 NC_007929.1 678692 680122 D COG0531 [E] Amino acid transporters; amino acid permease 678692..680122 Lactobacillus salivarius UCC118 3977305 YP_535529.1 CDS rplS NC_007929.1 680239 680595 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 680239..680595 Lactobacillus salivarius UCC118 3977306 YP_535530.1 CDS rpsT NC_007929.1 680931 681185 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(680931..681185) Lactobacillus salivarius UCC118 3977307 YP_535531.1 CDS rpsO NC_007929.1 681489 681758 D COG0184 [J] Ribosomal protein S15P/S13E; 30S ribosomal protein S15 681489..681758 Lactobacillus salivarius UCC118 3977308 YP_535532.1 CDS dapA NC_007929.1 681898 682770 D COG0329 [EM] Dihydrodipicolinate synthase/N-acetylneuraminate lyase; dihydrodipicolinate synthase 681898..682770 Lactobacillus salivarius UCC118 3977309 YP_535533.1 CDS LSL_0640 NC_007929.1 682789 684486 D COG0595 [R] Predicted hydrolase of the metallo-beta-lactamase superfamily; metallo-beta-lactamase superfamily protein 682789..684486 Lactobacillus salivarius UCC118 3977310 YP_535534.1 CDS LSL_0641 NC_007929.1 684538 685425 D hypothetical protein 684538..685425 Lactobacillus salivarius UCC118 3977311 YP_535535.1 CDS tufB NC_007929.1 685773 686960 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 685773..686960 Lactobacillus salivarius UCC118 3977312 YP_535536.1 CDS tig NC_007929.1 687160 688470 D COG0544 [O] FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); trigger factor, PPIase 687160..688470 Lactobacillus salivarius UCC118 3977313 YP_535537.1 CDS clpX NC_007929.1 688685 689911 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 688685..689911 Lactobacillus salivarius UCC118 3977314 YP_535538.1 CDS gnd NC_007929.1 690020 691441 D catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 690020..691441 Lactobacillus salivarius UCC118 3977315 YP_535539.1 CDS LSL_0646 NC_007929.1 691520 693196 R COG0595 [R] Predicted hydrolase of the metallo-beta-lactamase superfamily; metallo-beta-lactamase superfamily protein complement(691520..693196) Lactobacillus salivarius UCC118 3977410 YP_535540.1 CDS LSL_0647 NC_007929.1 693201 693416 R COG5428 [S] Uncharacterized conserved small protein; hypothetical protein complement(693201..693416) Lactobacillus salivarius UCC118 3977411 YP_535541.1 CDS LSL_0648 NC_007929.1 693623 694126 D hypothetical protein 693623..694126 Lactobacillus salivarius UCC118 3977412 YP_535542.1 CDS def NC_007929.1 694232 694792 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(694232..694792) Lactobacillus salivarius UCC118 3977413 YP_535543.1 CDS LSL_0650 NC_007929.1 694948 695832 D lactate/malate dehydrogenase 694948..695832 Lactobacillus salivarius UCC118 3977414 YP_535544.1 CDS LSL_0651 NC_007929.1 695843 696118 D COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 695843..696118 Lactobacillus salivarius UCC118 3977415 YP_535545.1 CDS LSL_0652 NC_007929.1 696128 696907 D COG0483 [G] Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family; myo-inositol-1(or 4)-monophosphatase 696128..696907 Lactobacillus salivarius UCC118 3977416 YP_535546.1 CDS typA NC_007929.1 697034 698875 D COG1217 [T] Predicted membrane GTPase involved in stress response; GTP-binding protein 697034..698875 Lactobacillus salivarius UCC118 3977417 YP_535547.1 CDS manX NC_007929.1 699278 700270 D COG2893 [G] Phosphotransferase system, mannose/fructose-specific component IIA; PTS system, mannose-specific IIAB component 699278..700270 Lactobacillus salivarius UCC118 3977418 YP_535548.1 CDS LSL_0655 NC_007929.1 700291 701091 D COG3715 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; PTS system, mannose-specific IIC component 700291..701091 Lactobacillus salivarius UCC118 3977419 YP_535549.1 CDS LSL_0656 NC_007929.1 701112 702032 D COG3716 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; PTS system, mannose-specific IID component 701112..702032 Lactobacillus salivarius UCC118 3977420 YP_535550.1 CDS ftsW NC_007929.1 702331 703530 D COG0772 [D] Bacterial cell division membrane protein; cell division protein 702331..703530 Lactobacillus salivarius UCC118 3977421 YP_535551.1 CDS pycA NC_007929.1 703561 706986 D biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 703561..706986 Lactobacillus salivarius UCC118 3977422 YP_535552.1 CDS LSL_0659 NC_007929.1 707146 707424 D COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 707146..707424 Lactobacillus salivarius UCC118 3977423 YP_535553.1 CDS LSL_0660 NC_007929.1 707435 707995 D COG0742 [L] N6-adenine-specific methylase; methyltransferase 707435..707995 Lactobacillus salivarius UCC118 3977424 YP_535554.1 CDS coaD NC_007929.1 707998 708480 D COG0669 [H] Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltransferase 707998..708480 Lactobacillus salivarius UCC118 3977425 YP_535555.1 CDS lon NC_007929.1 708477 709511 D COG3480 [T] Predicted secreted protein containing a PDZ domain; ATP-dependent protease La 708477..709511 Lactobacillus salivarius UCC118 3977426 YP_535556.1 CDS purC NC_007929.1 709824 710537 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 709824..710537 Lactobacillus salivarius UCC118 3977427 YP_535557.1 CDS purS NC_007929.1 710556 710804 D COG1828 [F] Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component; phosphoribosylformylglycinamidine synthase 710556..710804 Lactobacillus salivarius UCC118 3977428 YP_535558.1 CDS purQ NC_007929.1 710804 711478 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 710804..711478 Lactobacillus salivarius UCC118 3976893 YP_535559.1 CDS purL NC_007929.1 711480 713705 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 711480..713705 Lactobacillus salivarius UCC118 3976894 YP_535560.1 CDS purF NC_007929.1 713681 715132 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 713681..715132 Lactobacillus salivarius UCC118 3976895 YP_535561.1 CDS purM NC_007929.1 715133 716170 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 715133..716170 Lactobacillus salivarius UCC118 3976896 YP_535562.1 CDS purN NC_007929.1 716183 716770 D COG0299 [F] Folate-dependent phosphoribosylglycinamide formyltransferase PurN; phosphoribosylglycinamide formyltransferase 716183..716770 Lactobacillus salivarius UCC118 3976897 YP_535563.1 CDS purH NC_007929.1 716782 718320 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 716782..718320 Lactobacillus salivarius UCC118 3976898 YP_535564.1 CDS purD NC_007929.1 718337 719593 D COG0151 [F] Phosphoribosylamine-glycine ligase; phosphoribosylamine--glycine ligase 718337..719593 Lactobacillus salivarius UCC118 3976899 YP_535565.1 CDS LSL_0672 NC_007929.1 719767 720840 D hypothetical protein 719767..720840 Lactobacillus salivarius UCC118 3976900 YP_535566.1 CDS cls NC_007929.1 720907 722400 R COG1502 [I] Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; cardiolipin synthetase complement(720907..722400) Lactobacillus salivarius UCC118 3976901 YP_535567.1 CDS LSL_0674 NC_007929.1 722513 723400 D COG0583 [K] Transcriptional regulator; LysR family transcriptional regulator 722513..723400 Lactobacillus salivarius UCC118 3976902 YP_535568.1 CDS LSL_0675 NC_007929.1 723653 723862 R hypothetical protein complement(723653..723862) Lactobacillus salivarius UCC118 3976904 YP_535569.1 CDS LSL_0676 NC_007929.1 723930 724619 R COG1011 [R] Predicted hydrolase (HAD superfamily); HAD superfamily hydrolase complement(723930..724619) Lactobacillus salivarius UCC118 3976905 YP_535570.1 CDS argS NC_007929.1 725008 726699 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 725008..726699 Lactobacillus salivarius UCC118 3976906 YP_535571.1 CDS comEA NC_007929.1 726811 727500 D COG1555 [L] DNA uptake protein and related DNA-binding proteins; ComE operon protein 1 726811..727500 Lactobacillus salivarius UCC118 3976907 YP_535572.1 CDS comEB NC_007929.1 727544 728020 D COG2131 [F] Deoxycytidylate deaminase; ComE operon protein 2 727544..728020 Lactobacillus salivarius UCC118 3976908 YP_535573.1 CDS LSL_0680 NC_007929.1 728033 730294 D COG2248 [R] Predicted hydrolase (metallo-beta-lactamase superfamily); ComE operon protein 3 728033..730294 Lactobacillus salivarius UCC118 3976909 YP_535574.1 CDS holA NC_007929.1 730304 731326 D required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 730304..731326 Lactobacillus salivarius UCC118 3976910 YP_535575.1 CDS LSL_0682 NC_007929.1 731345 732391 R catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase complement(731345..732391) Lactobacillus salivarius UCC118 3976911 YP_535576.1 CDS LSL_0683 NC_007929.1 732407 733474 R COG1577 [I] Mevalonate kinase; phosphomevalonate kinase complement(732407..733474) Lactobacillus salivarius UCC118 3977203 YP_535577.1 CDS LSL_0684 NC_007929.1 733499 734467 R COG3407 [I] Mevalonate pyrophosphate decarboxylase; diphosphomevalonate decarboxylase complement(733499..734467) Lactobacillus salivarius UCC118 3977204 YP_535578.1 CDS eRG NC_007929.1 734480 735424 R COG1577 [I] Mevalonate kinase; mevalonate kinase complement(734480..735424) Lactobacillus salivarius UCC118 3977205 YP_535579.1 CDS dinG NC_007929.1 735672 738461 D COG1199 [KL] Rad3-related DNA helicases; ATP-dependent helicase DinG 735672..738461 Lactobacillus salivarius UCC118 3977206 YP_535580.1 CDS LSL_0687 NC_007929.1 738585 739088 D COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 738585..739088 Lactobacillus salivarius UCC118 3977207 YP_535581.1 CDS LSL_0688 NC_007929.1 739106 740287 D COG0436 [E] Aspartate/tyrosine/aromatic aminotransferase; aspartate aminotransferase 739106..740287 Lactobacillus salivarius UCC118 3977208 YP_535582.1 CDS asnC NC_007929.1 740300 741601 D catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 740300..741601 Lactobacillus salivarius UCC118 3977209 YP_535583.1 CDS LSL_0690 NC_007929.1 741709 742416 D COG3935 [L] primosome component and related proteins; DNA replication protein dnaD 741709..742416 Lactobacillus salivarius UCC118 3977210 YP_535584.1 CDS nth NC_007929.1 742431 743072 D COG0177 [L] Predicted EndoIII-related endonuclease; endonuclease III 742431..743072 Lactobacillus salivarius UCC118 3977211 YP_535585.1 CDS msrA NC_007929.1 743128 743646 D COG0225 [O] Peptide methionine sulfoxide reductase; peptide methionine sulfoxide reductase 743128..743646 Lactobacillus salivarius UCC118 3977212 YP_535586.1 CDS LSL_0693 NC_007929.1 743670 744542 D COG0011 [S] Uncharacterized conserved protein; hypothetical protein 743670..744542 Lactobacillus salivarius UCC118 3977213 YP_535587.1 CDS LSL_0694 NC_007929.1 744613 745620 D hypothetical protein 744613..745620 Lactobacillus salivarius UCC118 3977214 YP_535588.1 CDS rfaG NC_007929.1 745617 746408 D COG3774 [M] Mannosyltransferase OCH1 and related enzymes; glycosyltransferase 745617..746408 Lactobacillus salivarius UCC118 3977215 YP_535589.1 CDS rfaG NC_007929.1 746395 747342 D COG0463 [M] Glycosyltransferases involved in cell wall biogenesis; glycosyltransferase 746395..747342 Lactobacillus salivarius UCC118 3977216 YP_535590.1 CDS LSL_0697 NC_007929.1 747358 747543 D hypothetical protein 747358..747543 Lactobacillus salivarius UCC118 3977217 YP_535591.1 CDS LSL_0698 NC_007929.1 747546 747731 D hypothetical protein 747546..747731 Lactobacillus salivarius UCC118 3977218 YP_535592.1 CDS LSL_0699 NC_007929.1 747834 748646 R COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein complement(747834..748646) Lactobacillus salivarius UCC118 3977219 YP_535593.1 CDS rpsU NC_007929.1 748897 749082 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 748897..749082 Lactobacillus salivarius UCC118 3977220 YP_535594.1 CDS LSL_0701 NC_007929.1 749101 749544 D COG0011 [S] Uncharacterized conserved protein; GatB/Yqey domain-containing protein 749101..749544 Lactobacillus salivarius UCC118 3977221 YP_535595.1 CDS LSL_0702 NC_007929.1 749646 749789 D hypothetical protein 749646..749789 Lactobacillus salivarius UCC118 3976931 YP_535596.1 CDS LSL_0703 NC_007929.1 749870 750700 R integrase/recombinase xerD complement(749870..750700) Lactobacillus salivarius UCC118 3976932 YP_535597.1 CDS LSL_0704 NC_007929.1 750705 751601 R COG0011 [S] Uncharacterized conserved protein; hypothetical protein complement(750705..751601) Lactobacillus salivarius UCC118 3976933 YP_535598.1 CDS dapB NC_007929.1 751777 752565 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 751777..752565 Lactobacillus salivarius UCC118 3976934 YP_535599.1 CDS pcnB NC_007929.1 752562 753776 D catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity; tRNA CCA-pyrophosphorylase 752562..753776 Lactobacillus salivarius UCC118 3976935 YP_535600.1 CDS LSL_0707 NC_007929.1 753773 755680 D COG0488 [R] ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter, ATP-binding protein 753773..755680 Lactobacillus salivarius UCC118 3976936 YP_535601.1 CDS thyA NC_007929.1 755698 756654 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 755698..756654 Lactobacillus salivarius UCC118 3976937 YP_535602.1 CDS folA NC_007929.1 756672 757175 D COG0262 [H] Dihydrofolate reductase; dihydrofolate reductase 756672..757175 Lactobacillus salivarius UCC118 3976938 YP_535603.1 CDS LSL_0710 NC_007929.1 757352 758212 D COG0656 [R] Aldo/keto reductases, related to diketogulonate reductase; oxidoreductase 757352..758212 Lactobacillus salivarius UCC118 3976939 YP_535604.1 CDS LSL_0711 NC_007929.1 758214 758675 D COG0640 [K] Predicted transcriptional regulators; MerR family transcriptional regulator 758214..758675 Lactobacillus salivarius UCC118 3976940 YP_535605.1 CDS LSL_0712 NC_007929.1 758679 759635 D COG3573 [R] Predicted oxidoreductase; oxidoreductase 758679..759635 Lactobacillus salivarius UCC118 3976941 YP_535606.1 CDS LSL_0713 NC_007929.1 759718 760338 R hypothetical protein complement(759718..760338) Lactobacillus salivarius UCC118 3976942 YP_535607.1 CDS LSL_0714 NC_007929.1 760427 761356 D COG2755 [E] Lysophospholipase L1 and related esterases; lipase/acylhydrolase 760427..761356 Lactobacillus salivarius UCC118 3976943 YP_535608.1 CDS LSL_0715 NC_007929.1 761361 761960 D COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 761361..761960 Lactobacillus salivarius UCC118 3976944 YP_535609.1 CDS LSL_0716 NC_007929.1 761972 762199 D COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 761972..762199 Lactobacillus salivarius UCC118 3976945 YP_535610.1 CDS LSL_0717 NC_007929.1 762258 763115 D COG1160 [R] Predicted GTPases; GTP-binding protein 762258..763115 Lactobacillus salivarius UCC118 3976946 YP_535611.1 CDS rnhB NC_007929.1 763125 763892 D COG0164 [L] Ribonuclease HII; ribonuclease HII 763125..763892 Lactobacillus salivarius UCC118 3976947 YP_535612.1 CDS LSL_0719 NC_007929.1 763957 764817 D COG0758 [LU] Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake; DNA processing protein 763957..764817 Lactobacillus salivarius UCC118 3976948 YP_535613.1 CDS topA NC_007929.1 765005 767116 D COG0550 [L] Topoisomerase IA; DNA topoisomerase I 765005..767116 Lactobacillus salivarius UCC118 3976949 YP_535614.1 CDS LSL_0721 NC_007929.1 767139 768449 D TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 767139..768449 Lactobacillus salivarius UCC118 3976950 YP_535615.1 CDS LSL_0722 NC_007929.1 768571 769974 D COG3775 [G] Phosphotransferase system, galactitol-specific IIC component; PTS system, galactitol-specific IIC component 768571..769974 Lactobacillus salivarius UCC118 3977458 YP_535616.1 CDS LSL_0723 NC_007929.1 770017 770634 R COG0583 [K] Transcriptional regulator; TetR family transcriptional regulator complement(770017..770634) Lactobacillus salivarius UCC118 3977459 YP_535617.1 CDS LSL_0724 NC_007929.1 770802 771686 D COG1131 [V] ABC-type multidrug transport system, ATPase component; ABC transporter, ATP-binding protein 770802..771686 Lactobacillus salivarius UCC118 3977460 YP_535618.1 CDS LSL_0725 NC_007929.1 771706 773310 D COG3559 [M] exporter of polyketide antibiotics; ABC transporter permease 771706..773310 Lactobacillus salivarius UCC118 3977461 YP_535619.1 CDS gpmB NC_007929.1 773469 774125 D COG0406 [G] Fructose-2,6-bisphosphatase; phosphoglycerate mutase 773469..774125 Lactobacillus salivarius UCC118 3977462 YP_535620.1 CDS LSL_0727 NC_007929.1 774141 774809 D COG0457 [R] FOG: TPR repeat; hypothetical protein 774141..774809 Lactobacillus salivarius UCC118 3977463 YP_535621.1 CDS recD NC_007929.1 774802 777276 D COG0507 [L] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member; exodeoxyribonuclease V alpha chain 774802..777276 Lactobacillus salivarius UCC118 3977464 YP_535622.1 CDS xerC NC_007929.1 777765 778886 R COG0582 [L] Integrase; phage integrase complement(777765..778886) Lactobacillus salivarius UCC118 3977465 YP_535623.1 CDS LSL_0730 NC_007929.1 778905 779087 R hypothetical protein complement(778905..779087) Lactobacillus salivarius UCC118 3977466 YP_535624.1 CDS LSL_0731 NC_007929.1 779231 779368 R hypothetical protein complement(779231..779368) Lactobacillus salivarius UCC118 3977467 YP_535625.1 CDS LSL_0732 NC_007929.1 780316 780747 R COG0675 [L] Transposase and inactivated derivatives; IS200/IS605 family transposase complement(780316..780747) Lactobacillus salivarius UCC118 3977468 YP_535626.1 CDS LSL_0733 NC_007929.1 780847 782124 D COG0675 [L] Transposase and inactivated derivatives; IS200/IS605 family transposase 780847..782124 Lactobacillus salivarius UCC118 3977469 YP_535627.1 CDS LSL_0734 NC_007929.1 782443 782880 D hypothetical protein 782443..782880 Lactobacillus salivarius UCC118 3977470 YP_535628.1 CDS LSL_0735 NC_007929.1 782877 783053 R hypothetical protein complement(782877..783053) Lactobacillus salivarius UCC118 3977471 YP_535629.1 CDS LSL_0736 NC_007929.1 783066 783458 R hypothetical protein complement(783066..783458) Lactobacillus salivarius UCC118 3977472 YP_535630.1 CDS LSL_0737 NC_007929.1 783539 783682 R hypothetical protein complement(783539..783682) Lactobacillus salivarius UCC118 3977473 YP_535631.1 CDS LSL_0738 NC_007929.1 783816 784106 R hypothetical protein complement(783816..784106) Lactobacillus salivarius UCC118 3977474 YP_535632.1 CDS LSL_0739 NC_007929.1 784134 784286 R hypothetical protein complement(784134..784286) Lactobacillus salivarius UCC118 3977475 YP_535633.1 CDS LSL_0740 NC_007929.1 784307 784957 R phage super infection exclusion complement(784307..784957) Lactobacillus salivarius UCC118 3976819 YP_535634.1 CDS LSL_0741 NC_007929.1 784990 785289 R COG2856 [E] Predicted Zn peptidase; phage cI like repressor complement(784990..785289) Lactobacillus salivarius UCC118 3976820 YP_535635.1 CDS LSL_0742 NC_007929.1 785426 785821 R COG0640 [K] Predicted transcriptional regulators; Cro/CI family phage transcriptional regulator complement(785426..785821) Lactobacillus salivarius UCC118 3976821 YP_535636.1 CDS LSL_0743 NC_007929.1 785875 786024 D hypothetical protein 785875..786024 Lactobacillus salivarius UCC118 3976822 YP_535637.1 CDS LSL_0744 NC_007929.1 786003 786353 D phage antirepressor 786003..786353 Lactobacillus salivarius UCC118 3976823 YP_535638.1 CDS LSL_0745 NC_007929.1 786366 786497 D phage antirepressor 786366..786497 Lactobacillus salivarius UCC118 3976824 YP_535639.1 CDS LSL_0746 NC_007929.1 786513 786944 D phage antirepressor 786513..786944 Lactobacillus salivarius UCC118 3976825 YP_535640.1 CDS LSL_0747 NC_007929.1 787035 787229 D hypothetical protein 787035..787229 Lactobacillus salivarius UCC118 3976826 YP_535641.1 CDS LSL_0748 NC_007929.1 787204 787515 D hypothetical protein 787204..787515 Lactobacillus salivarius UCC118 3976827 YP_535642.1 CDS LSL_0749 NC_007929.1 787622 787795 D hypothetical protein 787622..787795 Lactobacillus salivarius UCC118 3976828 YP_535643.1 CDS LSL_0750 NC_007929.1 787868 788026 D hypothetical protein 787868..788026 Lactobacillus salivarius UCC118 3976829 YP_535644.1 CDS LSL_0751 NC_007929.1 788013 788600 D hypothetical protein 788013..788600 Lactobacillus salivarius UCC118 3976830 YP_535645.1 CDS LSL_0752 NC_007929.1 788674 789897 D COG0553 [KL] Superfamily II DNA/RNA helicases, SNF2 family; phage helicase 788674..789897 Lactobacillus salivarius UCC118 3976831 YP_535646.1 CDS LSL_0753 NC_007929.1 789869 790102 D hypothetical protein 789869..790102 Lactobacillus salivarius UCC118 3976832 YP_535647.1 CDS LSL_0754 NC_007929.1 790099 790413 D hypothetical protein 790099..790413 Lactobacillus salivarius UCC118 3976833 YP_535648.1 CDS LSL_0755 NC_007929.1 790413 790826 D hypothetical protein 790413..790826 Lactobacillus salivarius UCC118 3976834 YP_535649.1 CDS LSL_0756 NC_007929.1 790877 792457 D phage NTP-binding protein 790877..792457 Lactobacillus salivarius UCC118 3976835 YP_535650.1 CDS LSL_0757 NC_007929.1 792478 792945 D hypothetical protein 792478..792945 Lactobacillus salivarius UCC118 3976836 YP_535651.1 CDS LSL_0758 NC_007929.1 793126 794823 D phage DNA polymerase 793126..794823 Lactobacillus salivarius UCC118 3976837 YP_535652.1 CDS LSL_0759 NC_007929.1 794824 795855 D phage primase 794824..795855 Lactobacillus salivarius UCC118 3978006 YP_535653.1 CDS LSL_0760 NC_007929.1 795859 796728 D COG0433 [R] Predicted ATPase; phage DNA primase 795859..796728 Lactobacillus salivarius UCC118 3978007 YP_535654.1 CDS LSL_0761 NC_007929.1 796744 796968 D hypothetical protein 796744..796968 Lactobacillus salivarius UCC118 3978008 YP_535655.1 CDS LSL_0762 NC_007929.1 796988 797215 D hypothetical protein 796988..797215 Lactobacillus salivarius UCC118 3978009 YP_535656.1 CDS LSL_0763 NC_007929.1 797363 797617 D hypothetical protein 797363..797617 Lactobacillus salivarius UCC118 3978011 YP_535657.1 CDS LSL_0764 NC_007929.1 797586 798197 D hypothetical protein 797586..798197 Lactobacillus salivarius UCC118 3978012 YP_535658.1 CDS xerC NC_007929.1 798199 799146 D COG0582 [L] Integrase; phage integrase 798199..799146 Lactobacillus salivarius UCC118 3978013 YP_535659.1 CDS LSL_0766 NC_007929.1 799143 799535 D hypothetical protein 799143..799535 Lactobacillus salivarius UCC118 3978014 YP_535660.1 CDS LSL_0767 NC_007929.1 799558 800211 D COG0286 [V] type I restriction-modification system methyltransferase subunit; hypothetical protein 799558..800211 Lactobacillus salivarius UCC118 3978015 YP_535661.1 CDS LSL_0768 NC_007929.1 800204 800512 D hypothetical protein 800204..800512 Lactobacillus salivarius UCC118 3978016 YP_535662.1 CDS LSL_0769 NC_007929.1 800529 800840 D hypothetical protein 800529..800840 Lactobacillus salivarius UCC118 3978017 YP_535663.1 CDS LSL_0770 NC_007929.1 800941 801201 D hypothetical protein 800941..801201 Lactobacillus salivarius UCC118 3978018 YP_535664.1 CDS LSL_0771 NC_007929.1 801239 801547 D hypothetical protein 801239..801547 Lactobacillus salivarius UCC118 3978019 YP_535665.1 CDS LSL_0772 NC_007929.1 801537 801773 D hypothetical protein 801537..801773 Lactobacillus salivarius UCC118 3978020 YP_535666.1 CDS LSL_0773 NC_007929.1 801783 801941 D hypothetical protein 801783..801941 Lactobacillus salivarius UCC118 3978021 YP_535667.1 CDS LSL_0774 NC_007929.1 801954 802172 D hypothetical protein 801954..802172 Lactobacillus salivarius UCC118 3978022 YP_535668.1 CDS LSL_0775 NC_007929.1 802633 802767 D hypothetical protein 802633..802767 Lactobacillus salivarius UCC118 3978023 YP_535669.1 CDS LSL_0776 NC_007929.1 802779 803021 D hypothetical protein 802779..803021 Lactobacillus salivarius UCC118 3978024 YP_535670.1 CDS LSL_0777 NC_007929.1 803086 803373 D hypothetical protein 803086..803373 Lactobacillus salivarius UCC118 3977335 YP_535671.1 CDS LSL_0778 NC_007929.1 803386 803703 D hypothetical protein 803386..803703 Lactobacillus salivarius UCC118 3977336 YP_535672.1 CDS LSL_0779 NC_007929.1 804340 804759 D hypothetical protein 804340..804759 Lactobacillus salivarius UCC118 3977337 YP_535673.1 CDS LSL_0780 NC_007929.1 805018 805248 D hypothetical protein 805018..805248 Lactobacillus salivarius UCC118 3977338 YP_535674.1 CDS mcrA NC_007929.1 805250 805576 D COG1403 [V] Restriction endonuclease; phage endonuclease 805250..805576 Lactobacillus salivarius UCC118 3977339 YP_535675.1 CDS LSL_0782 NC_007929.1 805701 806153 D COG3728 [L] phage terminase, small subunit; phage terminase small subunit 805701..806153 Lactobacillus salivarius UCC118 3977340 YP_535676.1 CDS LSL_0783 NC_007929.1 806143 807909 D COG4626 [R] phage terminase-like protein, large subunit; terminase large subunit 806143..807909 Lactobacillus salivarius UCC118 3977341 YP_535677.1 CDS LSL_0784 NC_007929.1 807922 809166 D COG4672 [S] phage-related protein; portal protein 807922..809166 Lactobacillus salivarius UCC118 3977342 YP_535678.1 CDS clpP NC_007929.1 809102 809851 D COG0740 [OU] Protease subunit of ATP-dependent Clp proteases; ATP-dependent Clp protease proteolytic subunit 809102..809851 Lactobacillus salivarius UCC118 3977343 YP_535679.1 CDS LSL_0786 NC_007929.1 809848 810978 D phage prohead protease 809848..810978 Lactobacillus salivarius UCC118 3977344 YP_535680.1 CDS LSL_0787 NC_007929.1 811170 811490 D phage DNA packaging 811170..811490 Lactobacillus salivarius UCC118 3977345 YP_535681.1 CDS LSL_0788 NC_007929.1 811480 811824 D phage head-tail joining protein 811480..811824 Lactobacillus salivarius UCC118 3977346 YP_535682.1 CDS LSL_0789 NC_007929.1 811836 812258 D phage head-tail joining protein 811836..812258 Lactobacillus salivarius UCC118 3977347 YP_535683.1 CDS LSL_0790 NC_007929.1 812255 812626 D phage head-tail joining protein 812255..812626 Lactobacillus salivarius UCC118 3977348 YP_535684.1 CDS LSL_0791 NC_007929.1 812638 813288 D phage major tail protein 812638..813288 Lactobacillus salivarius UCC118 3977349 YP_535685.1 CDS LSL_0792 NC_007929.1 813285 813674 D hypothetical protein 813285..813674 Lactobacillus salivarius UCC118 3977350 YP_535686.1 CDS LSL_0793 NC_007929.1 813722 813847 D hypothetical protein 813722..813847 Lactobacillus salivarius UCC118 3977351 YP_535687.1 CDS LSL_0794 NC_007929.1 813863 817687 D COG5283 [S] phage-related tail protein; phage tail tape mesure protein 813863..817687 Lactobacillus salivarius UCC118 3977352 YP_535688.1 CDS LSL_0795 NC_007929.1 817699 818514 D hypothetical protein 817699..818514 Lactobacillus salivarius UCC118 3977353 YP_535689.1 CDS LSL_0796 NC_007929.1 818514 820364 D hypothetical protein 818514..820364 Lactobacillus salivarius UCC118 3977627 YP_535690.1 CDS LSL_0797 NC_007929.1 820368 821126 D COG3757 [M] Lyzozyme M1 (1,4-beta-N-acetylmuramidase); phage lysin 820368..821126 Lactobacillus salivarius UCC118 3977628 YP_535691.1 CDS LSL_0798 NC_007929.1 821278 821556 D hypothetical protein 821278..821556 Lactobacillus salivarius UCC118 3977629 YP_535692.1 CDS LSL_0799 NC_007929.1 821556 822632 D phage minor head protein 821556..822632 Lactobacillus salivarius UCC118 3977630 YP_535693.1 CDS LSL_0800 NC_007929.1 822713 823108 D hypothetical protein 822713..823108 Lactobacillus salivarius UCC118 3977631 YP_535694.1 CDS LSL_0801 NC_007929.1 823123 823524 D hypothetical protein 823123..823524 Lactobacillus salivarius UCC118 3977632 YP_535695.1 CDS LSL_0802 NC_007929.1 823526 823708 D hypothetical protein 823526..823708 Lactobacillus salivarius UCC118 3977633 YP_535696.1 CDS LSL_0803 NC_007929.1 823761 824066 D hypothetical protein 823761..824066 Lactobacillus salivarius UCC118 3977634 YP_535697.1 CDS LSL_0804 NC_007929.1 824063 824389 D hypothetical protein 824063..824389 Lactobacillus salivarius UCC118 3977635 YP_535698.1 CDS LSL_0805 NC_007929.1 824401 825669 D COG1388 [M] FOG: LysM repeat; phage lysin 824401..825669 Lactobacillus salivarius UCC118 3977636 YP_535699.1 CDS LSL_0806 NC_007929.1 826208 826369 D hypothetical protein 826208..826369 Lactobacillus salivarius UCC118 3977638 YP_535700.1 CDS LSL_0807 NC_007929.1 826349 826720 R hypothetical protein complement(826349..826720) Lactobacillus salivarius UCC118 3977639 YP_535701.1 CDS LSL_0808 NC_007929.1 826724 826834 R hypothetical protein complement(826724..826834) Lactobacillus salivarius UCC118 3977640 YP_535702.1 CDS LSL_0809 NC_007929.1 826829 826981 D hypothetical protein 826829..826981 Lactobacillus salivarius UCC118 3977641 YP_535703.1 CDS spoU NC_007929.1 826972 827733 D COG0566 [J] rRNA methylases; 23S rRNA methyltransferase 826972..827733 Lactobacillus salivarius UCC118 3977642 YP_535704.1 CDS LSL_0811 NC_007929.1 827842 828366 D COG1418 [R] Predicted HD superfamily hydrolase; HD superfamily hydrolase 827842..828366 Lactobacillus salivarius UCC118 3977643 YP_535705.1 CDS LSL_0812 NC_007929.1 828491 828838 D COG0640 [K] Predicted transcriptional regulators; MarR family transcriptional regulator 828491..828838 Lactobacillus salivarius UCC118 3977644 YP_535706.1 CDS pheS NC_007929.1 829184 830230 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 829184..830230 Lactobacillus salivarius UCC118 3977645 YP_535707.1 CDS pheT NC_007929.1 830237 832654 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 830237..832654 Lactobacillus salivarius UCC118 3977372 YP_535708.1 CDS LSL_0815 NC_007929.1 832807 833946 D COG1427 [R] Predicted periplasmic solute-binding protein; hypothetical protein 832807..833946 Lactobacillus salivarius UCC118 3977373 YP_535709.1 CDS udk NC_007929.1 833969 834610 D functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 833969..834610 Lactobacillus salivarius UCC118 3977374 YP_535710.1 CDS greA NC_007929.1 834627 835097 D COG0195 [K] Transcription elongation factor; transcription elongation factor 834627..835097 Lactobacillus salivarius UCC118 3977375 YP_535711.1 CDS LSL_0818 NC_007929.1 835231 835581 R hypothetical protein complement(835231..835581) Lactobacillus salivarius UCC118 3977376 YP_535712.1 CDS uRH NC_007929.1 835605 836567 R COG1957 [F] Inosine-uridine nucleoside N-ribohydrolase; inosine-uridine preferring nucleoside hydrolase complement(835605..836567) Lactobacillus salivarius UCC118 3977377 YP_535713.1 CDS LSL_0820 NC_007929.1 836837 837334 D hypothetical protein 836837..837334 Lactobacillus salivarius UCC118 3977378 YP_535714.1 CDS LSL_0821 NC_007929.1 838241 838972 D COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 838241..838972 Lactobacillus salivarius UCC118 3977380 YP_535715.1 CDS relA NC_007929.1 839012 841231 D COG0317 [TK] Guanosine polyphosphate pyrophosphohydrolases/synthetases; GTP pyrophosphokinase 839012..841231 Lactobacillus salivarius UCC118 3977381 YP_535716.1 CDS dtd NC_007929.1 841246 841692 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 841246..841692 Lactobacillus salivarius UCC118 3977382 YP_535717.1 CDS LSL_0824 NC_007929.1 841697 842311 D COG0546 [R] Predicted phosphatases; phosphoglycolate phosphatase 841697..842311 Lactobacillus salivarius UCC118 3977383 YP_535718.1 CDS lspA NC_007929.1 842378 842824 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 842378..842824 Lactobacillus salivarius UCC118 3977384 YP_535719.1 CDS rluD NC_007929.1 842817 843713 D COG0564 [J] Pseudouridylate synthases, 23S RNA-specific; ribosomal large subunit pseudouridine synthase D 842817..843713 Lactobacillus salivarius UCC118 3977385 YP_535720.1 CDS pyrR NC_007929.1 843921 844457 D regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase 843921..844457 Lactobacillus salivarius UCC118 3977386 YP_535721.1 CDS uraA NC_007929.1 844484 845791 D COG2233 [F] Xanthine/uracil permeases; Uracil permease 844484..845791 Lactobacillus salivarius UCC118 3977387 YP_535722.1 CDS carA NC_007929.1 845853 846953 D COG0505 [EF] Carbamoylphosphate synthase small subunit; carbamoylphosphate synthase small subunit 845853..846953 Lactobacillus salivarius UCC118 3977388 YP_535723.1 CDS pyrF NC_007929.1 848859 849572 D COG0284 [F] Orotidine-5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 848859..849572 Lactobacillus salivarius UCC118 3977760 YP_535724.1 CDS pyrE NC_007929.1 849572 850192 D COG0461 [F] Orotate phosphoribosyltransferase; orotate phosphoribosyltransferase 849572..850192 Lactobacillus salivarius UCC118 3977761 YP_535725.1 CDS LSL_0832 NC_007929.1 850307 851263 D COG0583 [K] Transcriptional regulator; LysR family transcriptional regulator 850307..851263 Lactobacillus salivarius UCC118 3977762 YP_535726.1 CDS ppa NC_007929.1 851289 852209 D catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase 851289..852209 Lactobacillus salivarius UCC118 3977763 YP_535727.1 CDS LSL_0834 NC_007929.1 852396 853148 D COG1349 [KG] Transcriptional regulators of sugar metabolism; DeoR family transcriptional regulator 852396..853148 Lactobacillus salivarius UCC118 3977764 YP_535728.1 CDS araT NC_007929.1 853208 854371 D catalyzes the transamination of the aromatic amino acid forming a ketoacid; first step in aromatic amino acid degradation in lactococci; aromatic amino acid aminotransferase 853208..854371 Lactobacillus salivarius UCC118 3977765 YP_535729.1 CDS murI NC_007929.1 854441 855211 D converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 854441..855211 Lactobacillus salivarius UCC118 3977766 YP_535730.1 CDS LSL_0837 NC_007929.1 855420 856106 D hypothetical protein 855420..856106 Lactobacillus salivarius UCC118 3977767 YP_535731.1 CDS divIVA NC_007929.1 856226 856570 D GpsB; guiding PBP1 shuttling; similar to DivIVA; cell division protein GpsB 856226..856570 Lactobacillus salivarius UCC118 3977768 YP_535732.1 CDS LSL_0839 NC_007929.1 857052 858182 D COG0116 [L] Predicted N6-adenine-specific DNA methylase; hypothetical protein 857052..858182 Lactobacillus salivarius UCC118 3977769 YP_535733.1 CDS LSL_0840 NC_007929.1 858179 858565 R ribonuclease HI / cell wall enzyme EBSB complement(858179..858565) Lactobacillus salivarius UCC118 3977770 YP_535734.1 CDS LSL_0841 NC_007929.1 858592 858966 D hypothetical protein 858592..858966 Lactobacillus salivarius UCC118 3977771 YP_535735.1 CDS fhs NC_007929.1 859086 860744 D COG2759 [F] Formyltetrahydrofolate synthetase; formate--tetrahydrofolate ligase 859086..860744 Lactobacillus salivarius UCC118 3977772 YP_535736.1 CDS LSL_0843 NC_007929.1 860763 861389 D hypothetical protein 860763..861389 Lactobacillus salivarius UCC118 3977773 YP_535737.1 CDS LSL_0844 NC_007929.1 861496 862785 D COG1196 [D] Chromosome segregation ATPases; hypothetical protein 861496..862785 Lactobacillus salivarius UCC118 3977774 YP_535738.1 CDS LSL_0845 NC_007929.1 863061 863291 D hypothetical protein 863061..863291 Lactobacillus salivarius UCC118 3977775 YP_535739.1 CDS LSL_0846 NC_007929.1 864752 865450 D COG2384 [R] Predicted SAM-dependent methyltransferase; hypothetical protein 864752..865450 Lactobacillus salivarius UCC118 3977777 YP_535740.1 CDS LSL_0847 NC_007929.1 865443 866255 D COG0011 [S] Uncharacterized conserved protein; NIF3-related protein 865443..866255 Lactobacillus salivarius UCC118 3977740 YP_535741.1 CDS pepD NC_007929.1 866274 867515 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 866274..867515 Lactobacillus salivarius UCC118 3977741 YP_535742.1 CDS LSL_0849 NC_007929.1 867571 868227 D COG4912 [L] Predicted DNA alkylation repair enzyme; hypothetical protein 867571..868227 Lactobacillus salivarius UCC118 3977742 YP_535743.1 CDS LSL_0850 NC_007929.1 868328 869260 D COG0697 [GER] Permeases of the drug/metabolite transporter (DMT) superfamily; drug/metabolite exporter family protein 868328..869260 Lactobacillus salivarius UCC118 3977743 YP_535744.1 CDS LSL_0851 NC_007929.1 869342 870598 D COG0457 [R] FOG: TPR repeat; hypothetical protein 869342..870598 Lactobacillus salivarius UCC118 3977744 YP_535745.1 CDS hisS NC_007929.1 870981 872276 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 870981..872276 Lactobacillus salivarius UCC118 3977745 YP_535746.1 CDS aspS NC_007929.1 872279 874051 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 872279..874051 Lactobacillus salivarius UCC118 3977746 YP_535747.1 CDS corA NC_007929.1 874183 875100 D COG0598 [P] Mg2+ and Co2+ transporters; magnesium/cobalt transporter CorA 874183..875100 Lactobacillus salivarius UCC118 3977747 YP_535748.1 CDS nhaC NC_007929.1 875460 876827 D COG1757 [C] Na+/H+ antiporter; Na(+)/H(+) antiporter 875460..876827 Lactobacillus salivarius UCC118 3977748 YP_535749.1 CDS dapF NC_007929.1 876954 877931 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 876954..877931 Lactobacillus salivarius UCC118 3977749 YP_535750.1 CDS nudF NC_007929.1 877943 878479 D COG0494 [LR] NTP pyrophosphohydrolases including oxidative damage repair enzymes; ADP-ribose pyrophosphatase 877943..878479 Lactobacillus salivarius UCC118 3977750 YP_535751.1 CDS LSL_0858 NC_007929.1 878489 878710 D hypothetical protein 878489..878710 Lactobacillus salivarius UCC118 3977751 YP_535752.1 CDS pfs NC_007929.1 878731 879417 D COG0775 [F] Nucleoside phosphorylase; 5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase 878731..879417 Lactobacillus salivarius UCC118 3977752 YP_535753.1 CDS nifS NC_007929.1 879433 880575 D COG1104 [E] Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; cysteine desulfurase / selenocysteine lyase 879433..880575 Lactobacillus salivarius UCC118 3977753 YP_535754.1 CDS LSL_0861 NC_007929.1 880588 880929 D hypothetical protein 880588..880929 Lactobacillus salivarius UCC118 3977754 YP_535755.1 CDS trmU NC_007929.1 881042 882169 D COG0482 [J] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 881042..882169 Lactobacillus salivarius UCC118 3977755 YP_535756.1 CDS clpB NC_007929.1 882294 884885 D COG0542 [O] ATPases with chaperone activity, ATP-binding subunit; chaperone 882294..884885 Lactobacillus salivarius UCC118 3977756 YP_535757.1 CDS LSL_0864 NC_007929.1 884935 885120 R hypothetical protein complement(884935..885120) Lactobacillus salivarius UCC118 3977757 YP_535758.1 CDS dnaE NC_007929.1 885267 888560 D COG0587 [L] DNA polymerase III, alpha subunit; DNA polymerase III alpha subunit 885267..888560 Lactobacillus salivarius UCC118 3977758 YP_535759.1 CDS pfkA NC_007929.1 888727 889689 D catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 888727..889689 Lactobacillus salivarius UCC118 3977759 YP_535760.1 CDS pykF NC_007929.1 889779 891539 D COG0469 [G] Pyruvate kinase; pyruvate kinase 889779..891539 Lactobacillus salivarius UCC118 3977892 YP_535761.1 CDS LSL_0868 NC_007929.1 891718 892002 D hypothetical protein 891718..892002 Lactobacillus salivarius UCC118 3977893 YP_535762.1 CDS LSL_0869 NC_007929.1 892094 892465 R COG0344 [S] Predicted membrane protein; hypothetical protein complement(892094..892465) Lactobacillus salivarius UCC118 3977894 YP_535763.1 CDS LSL_0870 NC_007929.1 892572 893192 R COG0344 [S] Predicted membrane protein; hypothetical protein complement(892572..893192) Lactobacillus salivarius UCC118 3977895 YP_535764.1 CDS gyrB NC_007929.1 893358 895379 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 893358..895379 Lactobacillus salivarius UCC118 3977896 YP_535765.1 CDS gyrA NC_007929.1 895404 897830 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 895404..897830 Lactobacillus salivarius UCC118 3977897 YP_535766.1 CDS LSL_0873 NC_007929.1 897877 899565 R COG1293 [K] Predicted RNA-binding protein homologous to eukaryotic snRNP; fibronectin-binding protein / fibrinogen-binding protein complement(897877..899565) Lactobacillus salivarius UCC118 3977898 YP_535767.1 CDS LSL_0874 NC_007929.1 899752 900183 D COG0583 [K] Transcriptional regulator; MarR family transcriptional regulator 899752..900183 Lactobacillus salivarius UCC118 3977899 YP_535768.1 CDS LSL_0875 NC_007929.1 900222 901154 D COG0718 [S] Uncharacterized protein conserved in bacteria; DegV family protein 900222..901154 Lactobacillus salivarius UCC118 3977900 YP_535769.1 CDS lepB NC_007929.1 901296 901883 D COG0681 [U] signal peptidase I; signal peptidase I 901296..901883 Lactobacillus salivarius UCC118 3977901 YP_535770.1 CDS LSL_0877 NC_007929.1 902109 902558 R COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein complement(902109..902558) Lactobacillus salivarius UCC118 3977902 YP_535771.1 CDS glyA NC_007929.1 902617 903870 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(902617..903870) Lactobacillus salivarius UCC118 3977903 YP_535772.1 CDS LSL_0879 NC_007929.1 903993 904832 D COG1408 [R] Predicted phosphohydrolases; phosphoesterase 903993..904832 Lactobacillus salivarius UCC118 3977904 YP_535773.1 CDS LSL_0880 NC_007929.1 904974 905873 D COG0697 [GER] Permeases of the drug/metabolite transporter (DMT) superfamily; drug/metabolite exporter family protein 904974..905873 Lactobacillus salivarius UCC118 3977905 YP_535774.1 CDS LSL_0881 NC_007929.1 905913 907121 R COG1668 [CP] ABC-type Na+ efflux pump, permease component; ABC transporter, permease complement(905913..907121) Lactobacillus salivarius UCC118 3977906 YP_535775.1 CDS LSL_0882 NC_007929.1 907105 908001 R COG1101 [R] ABC-type uncharacterized transport system, ATPase component; ABC transporter, ATP-binding protein complement(907105..908001) Lactobacillus salivarius UCC118 3977907 YP_535776.1 CDS LSL_0883 NC_007929.1 908093 908698 R hypothetical protein complement(908093..908698) Lactobacillus salivarius UCC118 3977908 YP_535777.1 CDS LSL_0884 NC_007929.1 908870 909010 D hypothetical protein 908870..909010 Lactobacillus salivarius UCC118 3977909 YP_535778.1 CDS LSL_0885 NC_007929.1 909069 909344 R COG0776 [L] Bacterial nucleoid DNA-binding protein; DNA-binding protein HU complement(909069..909344) Lactobacillus salivarius UCC118 3977910 YP_535779.1 CDS engA NC_007929.1 909465 910775 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(909465..910775) Lactobacillus salivarius UCC118 3977778 YP_535780.1 CDS rpsA NC_007929.1 910860 912059 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(910860..912059) Lactobacillus salivarius UCC118 3977779 YP_535781.1 CDS arsC NC_007929.1 912312 912725 R COG0394 [T] Protein-tyrosine-phosphatase; arsenate reductase complement(912312..912725) Lactobacillus salivarius UCC118 3977780 YP_535782.1 CDS dltD NC_007929.1 912807 914081 R COG3966 [M] Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein); protein dltD precursor complement(912807..914081) Lactobacillus salivarius UCC118 3977781 YP_535783.1 CDS LSL_0890 NC_007929.1 914084 914311 R D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 2 complement(914084..914311) Lactobacillus salivarius UCC118 3977782 YP_535784.1 CDS dltB NC_007929.1 914332 915534 R COG1696 [M] Predicted membrane protein involved in D-alanine export; protein dltB complement(914332..915534) Lactobacillus salivarius UCC118 3977783 YP_535785.1 CDS LSL_0892 NC_007929.1 915534 917060 R transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 1 complement(915534..917060) Lactobacillus salivarius UCC118 3977784 YP_535786.1 CDS LSL_0893 NC_007929.1 917076 917234 R hypothetical protein complement(917076..917234) Lactobacillus salivarius UCC118 3977785 YP_535787.1 CDS recO NC_007929.1 917395 918177 R COG0353 [L] Recombinational DNA repair protein (RecF pathway); DNA repair protein complement(917395..918177) Lactobacillus salivarius UCC118 3977786 YP_535788.1 CDS era NC_007929.1 918244 919146 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(918244..919146) Lactobacillus salivarius UCC118 3977787 YP_535789.1 CDS dgkA NC_007929.1 919162 919578 R COG0818 [M] Diacylglycerol kinase; diacylglycerol kinase complement(919162..919578) Lactobacillus salivarius UCC118 3977788 YP_535790.1 CDS LSL_0897 NC_007929.1 919556 920035 R COG0319 [R] Predicted metal-dependent hydrolase; hypothetical protein complement(919556..920035) Lactobacillus salivarius UCC118 3977789 YP_535791.1 CDS phoH NC_007929.1 920051 921016 R COG1702 [T] Phosphate starvation-inducible protein PhoH, predicted ATPase; PhoH protein complement(920051..921016) Lactobacillus salivarius UCC118 3977790 YP_535792.1 CDS amiC NC_007929.1 921213 922061 D COG0860 [M] N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase 921213..922061 Lactobacillus salivarius UCC118 3977791 YP_535793.1 CDS cmk NC_007929.1 922113 922787 R COG0283 [F] Cytidylate kinase; cytidylate kinase complement(922113..922787) Lactobacillus salivarius UCC118 3977792 YP_535794.1 CDS LSL_0901 NC_007929.1 922819 923370 R hypothetical protein complement(922819..923370) Lactobacillus salivarius UCC118 3977793 YP_535795.1 CDS recQ NC_007929.1 923432 924877 R COG0514 [L] Superfamily II DNA helicase; ATP-dependent DNA helicase complement(923432..924877) Lactobacillus salivarius UCC118 3977794 YP_535796.1 CDS LSL_0903 NC_007929.1 924864 925904 R COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein complement(924864..925904) Lactobacillus salivarius UCC118 3977795 YP_535797.1 CDS mntH NC_007929.1 926084 927649 D COG1914 [P] Mn2+ and Fe2+ transporters of the NRAMP family; manganese transport protein 926084..927649 Lactobacillus salivarius UCC118 3977796 YP_535798.1 CDS LSL_0905 NC_007929.1 927713 928081 R COG0720 [H] 6-pyruvoyl-tetrahydropterin synthase; 6-pyruvoyl tetrahydropterin synthase complement(927713..928081) Lactobacillus salivarius UCC118 3977797 YP_535799.1 CDS LSL_0906 NC_007929.1 929400 929996 R hypothetical protein complement(929400..929996) Lactobacillus salivarius UCC118 3977241 YP_535800.1 CDS LSL_0907 NC_007929.1 929989 931533 R hypothetical protein complement(929989..931533) Lactobacillus salivarius UCC118 3977242 YP_535801.1 CDS LSL_0908 NC_007929.1 931600 932397 R hypothetical protein complement(931600..932397) Lactobacillus salivarius UCC118 3977243 YP_535802.1 CDS rpoD NC_007929.1 932755 933873 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD complement(932755..933873) Lactobacillus salivarius UCC118 3977244 YP_535803.1 CDS dnaG NC_007929.1 933886 935739 R COG0358 [L] DNA primase (bacterial type); DNA primase complement(933886..935739) Lactobacillus salivarius UCC118 3977245 YP_535804.1 CDS glyS NC_007929.1 935920 938001 R COG0751 [J] Glycyl-tRNA synthetase, beta subunit; glycyl-tRNA synthetase subunit beta complement(935920..938001) Lactobacillus salivarius UCC118 3977246 YP_535805.1 CDS glyQ NC_007929.1 938001 938918 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(938001..938918) Lactobacillus salivarius UCC118 3977247 YP_535806.1 CDS LSL_0913 NC_007929.1 939353 940240 R COG4814 [R] Uncharacterized protein with an alpha/beta hydrolase fold; acyltransferases and hydrolases with the alpha/beta hydrolase fold complement(939353..940240) Lactobacillus salivarius UCC118 3977248 YP_535807.1 CDS celB NC_007929.1 940241 941590 R COG1455 [G] Phosphotransferase system cellobiose-specific component IIC; cellobiose PTS, EIIC complement(940241..941590) Lactobacillus salivarius UCC118 3977249 YP_535808.1 CDS hsdS NC_007929.1 941848 943053 D COG0732 [V] Restriction endonuclease S subunits; type I restriction-modification system specificity subunit 941848..943053 Lactobacillus salivarius UCC118 3977250 YP_535809.1 CDS hsdS NC_007929.1 943300 944418 D COG0732 [V] Restriction endonuclease S subunits; type I restriction-modification system specificity subunit 943300..944418 Lactobacillus salivarius UCC118 3977251 YP_535810.1 CDS xerC NC_007929.1 944461 945378 R COG0582 [L] Integrase; DNA integration/recombination/inversion protein complement(944461..945378) Lactobacillus salivarius UCC118 3977252 YP_535811.1 CDS hsdS NC_007929.1 945432 946586 R COG0732 [V] Restriction endonuclease S subunits; type I restriction-modification system specificity subunit complement(945432..946586) Lactobacillus salivarius UCC118 3977253 YP_535812.1 CDS hsdM NC_007929.1 946586 948175 R COG0286 [V] type I restriction-modification system methyltransferase subunit; type I restriction-modification system methylation subunit complement(946586..948175) Lactobacillus salivarius UCC118 3977254 YP_535813.1 CDS hsdR NC_007929.1 948193 951207 R COG0610 [V] type I site-specific restriction-modification system, R (restriction) subunit and related helicases; type I restriction-modification system restriction subunit complement(948193..951207) Lactobacillus salivarius UCC118 3977255 YP_535814.1 CDS LSL_0921 NC_007929.1 951368 951577 R hypothetical protein complement(951368..951577) Lactobacillus salivarius UCC118 3977256 YP_535815.1 CDS LSL_0922 NC_007929.1 951623 952237 R COG1051 [F] ADP-ribose pyrophosphatase; phosphohydrolase, MutT/nudix family protein complement(951623..952237) Lactobacillus salivarius UCC118 3977257 YP_535816.1 CDS pgpB NC_007929.1 952414 953091 R COG0671 [I] Membrane-associated phospholipid phosphatase; phosphatidylglycerophosphatase B complement(952414..953091) Lactobacillus salivarius UCC118 3977476 YP_535817.1 CDS LSL_0924 NC_007929.1 953094 953726 R COG0110 [R] acetyltransferase (isoleucine patch superfamily); maltose O-acetyltransferase complement(953094..953726) Lactobacillus salivarius UCC118 3977477 YP_535818.1 CDS LSL_0925 NC_007929.1 953933 954160 R hypothetical protein complement(953933..954160) Lactobacillus salivarius UCC118 3977478 YP_535819.1 CDS LSL_0926 NC_007929.1 954140 954898 D zwittermicin A resistance protein zmaR 954140..954898 Lactobacillus salivarius UCC118 3977479 YP_535820.1 CDS LSL_0927 NC_007929.1 955042 955167 D hypothetical protein 955042..955167 Lactobacillus salivarius UCC118 3977480 YP_535821.1 CDS LSL_0928 NC_007929.1 955313 956407 R COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase complement(955313..956407) Lactobacillus salivarius UCC118 3977481 YP_535822.1 CDS adeC NC_007929.1 956686 958422 R COG1001 [F] Adenine deaminase; adenine deaminase complement(956686..958422) Lactobacillus salivarius UCC118 3977483 YP_535823.1 CDS LSL_0930 NC_007929.1 958535 959086 R COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein complement(958535..959086) Lactobacillus salivarius UCC118 3977484 YP_535824.1 CDS nhaC NC_007929.1 959562 960947 D COG1757 [C] Na+/H+ antiporter; Na(+)/H(+) antiporter 959562..960947 Lactobacillus salivarius UCC118 3977485 YP_535825.1 CDS recU NC_007929.1 961115 961756 D functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC; Holliday junction-specific endonuclease 961115..961756 Lactobacillus salivarius UCC118 3977486 YP_535826.1 CDS mrcA NC_007929.1 961786 964104 D COG0744 [M] Membrane carboxypeptidase (penicillin-binding protein); multimodular transpeptidase-transglycosylase PBP 1A 961786..964104 Lactobacillus salivarius UCC118 3977487 YP_535827.1 CDS LSL_0934 NC_007929.1 964160 965053 R COG4974 [L] Site-specific recombinase XerD; integrase/recombinase XerD/RipX family complement(964160..965053) Lactobacillus salivarius UCC118 3977488 YP_535828.1 CDS LSL_0935 NC_007929.1 965060 965926 R COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein complement(965060..965926) Lactobacillus salivarius UCC118 3977489 YP_535829.1 CDS LSL_0936 NC_007929.1 965941 966402 R COG0344 [S] Predicted membrane protein; hypothetical protein complement(965941..966402) Lactobacillus salivarius UCC118 3977490 YP_535830.1 CDS LSL_0937 NC_007929.1 966529 967125 R COG0344 [S] Predicted membrane protein; hypothetical protein complement(966529..967125) Lactobacillus salivarius UCC118 3977491 YP_535831.1 CDS rluB NC_007929.1 967428 968156 R COG1187 [J] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; ribosomal large subunit pseudouridine synthase B complement(967428..968156) Lactobacillus salivarius UCC118 3977492 YP_535832.1 CDS LSL_0939 NC_007929.1 968156 968746 R COG1386 [K] Predicted transcriptional regulator containing the HTH domain; segregation and condensation protein ScpB complement(968156..968746) Lactobacillus salivarius UCC118 3977493 YP_535833.1 CDS LSL_0940 NC_007929.1 968736 969521 R COG0011 [S] Uncharacterized conserved protein; segregation and condensation protein ScpA complement(968736..969521) Lactobacillus salivarius UCC118 3977494 YP_535834.1 CDS LSL_0941 NC_007929.1 969505 969870 R RibT protein complement(969505..969870) Lactobacillus salivarius UCC118 3977837 YP_535835.1 CDS LSL_0942 NC_007929.1 970039 970683 R hypothetical protein complement(970039..970683) Lactobacillus salivarius UCC118 3977838 YP_535836.1 CDS LSL_0943 NC_007929.1 970720 971715 R hypothetical protein complement(970720..971715) Lactobacillus salivarius UCC118 3977839 YP_535837.1 CDS LSL_0944 NC_007929.1 971877 972011 R hypothetical protein complement(971877..972011) Lactobacillus salivarius UCC118 3977840 YP_535838.1 CDS LSL_0945 NC_007929.1 972086 972352 R hypothetical protein complement(972086..972352) Lactobacillus salivarius UCC118 3977841 YP_535839.1 CDS hslU NC_007929.1 972459 973862 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(972459..973862) Lactobacillus salivarius UCC118 3977842 YP_535840.1 CDS LSL_0947 NC_007929.1 973881 974408 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(973881..974408) Lactobacillus salivarius UCC118 3977843 YP_535841.1 CDS LSL_0948 NC_007929.1 974435 975331 R COG4974 [L] Site-specific recombinase XerD; XerC/CodV family integrase/recombinase complement(974435..975331) Lactobacillus salivarius UCC118 3977844 YP_535842.1 CDS cfa NC_007929.1 975523 976698 R COG2230 [M] Cyclopropane fatty acid synthase and related methyltransferases; cyclopropane-fatty-acyl-phospholipid synthase complement(975523..976698) Lactobacillus salivarius UCC118 3977845 YP_535843.1 CDS LSL_0950 NC_007929.1 976972 977934 D COG1597 [IR] Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase; transcription regulator 976972..977934 Lactobacillus salivarius UCC118 3977846 YP_535844.1 CDS LSL_0951 NC_007929.1 978049 978951 R hypothetical protein complement(978049..978951) Lactobacillus salivarius UCC118 3977847 YP_535845.1 CDS LSL_0952 NC_007929.1 978976 979209 R hypothetical protein complement(978976..979209) Lactobacillus salivarius UCC118 3977848 YP_535846.1 CDS LSL_0953 NC_007929.1 979569 980153 D hypothetical protein 979569..980153 Lactobacillus salivarius UCC118 3977849 YP_535847.1 CDS rpmA NC_007929.1 980256 980537 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(980256..980537) Lactobacillus salivarius UCC118 3977850 YP_535848.1 CDS LSL_0955 NC_007929.1 980559 980885 R COG2868 [J] Predicted ribosomal protein; ribosomal protein complement(980559..980885) Lactobacillus salivarius UCC118 3977851 YP_535849.1 CDS rplU NC_007929.1 980910 981218 R COG0261 [J] Ribosomal protein L21; 50S ribosomal protein L21P complement(980910..981218) Lactobacillus salivarius UCC118 3977852 YP_535850.1 CDS LSL_0957 NC_007929.1 981374 981631 R hypothetical protein complement(981374..981631) Lactobacillus salivarius UCC118 3977853 YP_535851.1 CDS LSL_0958 NC_007929.1 981628 981780 R hypothetical protein complement(981628..981780) Lactobacillus salivarius UCC118 3977854 YP_535852.1 CDS LSL_0959 NC_007929.1 981762 982169 R hypothetical protein complement(981762..982169) Lactobacillus salivarius UCC118 3977855 YP_535853.1 CDS LSL_0960 NC_007929.1 982289 982522 R hypothetical protein complement(982289..982522) Lactobacillus salivarius UCC118 3976646 YP_535854.1 CDS LSL_0961 NC_007929.1 982539 982739 R hypothetical protein complement(982539..982739) Lactobacillus salivarius UCC118 3976647 YP_535855.1 CDS LSL_0962 NC_007929.1 982830 983351 R hypothetical protein complement(982830..983351) Lactobacillus salivarius UCC118 3976648 YP_535856.1 CDS LSL_0963 NC_007929.1 983671 984408 D hypothetical protein 983671..984408 Lactobacillus salivarius UCC118 3976649 YP_535857.1 CDS LSL_0964 NC_007929.1 984492 985058 D COG0494 [LR] NTP pyrophosphohydrolases including oxidative damage repair enzymes; phosphohydrolase, MutT/nudix family protein 984492..985058 Lactobacillus salivarius UCC118 3976650 YP_535858.1 CDS gAlE NC_007929.1 985055 986014 R COG0451 [MG] Nucleoside-diphosphate-sugar epimerases; UDP-glucose 4-epimerase complement(985055..986014) Lactobacillus salivarius UCC118 3976651 YP_535859.1 CDS wecD NC_007929.1 986058 986570 R COG0454 [KR] Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase complement(986058..986570) Lactobacillus salivarius UCC118 3976652 YP_535860.1 CDS LSL_0967 NC_007929.1 986895 987704 R hypothetical protein complement(986895..987704) Lactobacillus salivarius UCC118 3976653 YP_535861.1 CDS LSL_0968 NC_007929.1 987802 988485 R COG0392 [S] Predicted integral membrane protein; hypothetical protein complement(987802..988485) Lactobacillus salivarius UCC118 3976654 YP_535862.1 CDS LSL_0969 NC_007929.1 988702 989271 D hypothetical protein 988702..989271 Lactobacillus salivarius UCC118 3976655 YP_535863.1 CDS qor NC_007929.1 989341 990345 R COG0604 [CR] NADPH:quinone reductase and related Zn-dependent oxidoreductases; quinone oxidoreductase complement(989341..990345) Lactobacillus salivarius UCC118 3976656 YP_535864.1 CDS LSL_0971 NC_007929.1 990570 990878 R COG0011 [S] Uncharacterized conserved protein; hypothetical protein complement(990570..990878) Lactobacillus salivarius UCC118 3976657 YP_535865.1 CDS LSL_0972 NC_007929.1 990859 991320 R COG1395 [K] Predicted transcriptional regulator; transcription regulator complement(990859..991320) Lactobacillus salivarius UCC118 3976658 YP_535866.1 CDS LSL_0973 NC_007929.1 991383 992228 R COG0702 [MG] Predicted nucleoside-diphosphate-sugar epimerases; hypothetical protein complement(991383..992228) Lactobacillus salivarius UCC118 3976659 YP_535867.1 CDS LSL_0975 NC_007929.1 992368 992700 R hypothetical protein complement(992368..992700) Lactobacillus salivarius UCC118 3976660 YP_535868.1 CDS rfaG NC_007929.1 992876 994015 R glycosyltransferase complement(992876..994015) Lactobacillus salivarius UCC118 3976661 YP_535869.1 CDS rfaG NC_007929.1 994108 995265 R COG0438 [M] Glycosyltransferase; glycosyltransferase complement(994108..995265) Lactobacillus salivarius UCC118 3976662 YP_535870.1 CDS ugd NC_007929.1 995277 996527 R COG1004 [M] Predicted UDP-glucose 6-dehydrogenase; UDP-glucose 6-dehydrogenase complement(995277..996527) Lactobacillus salivarius UCC118 3976663 YP_535871.1 CDS LSL_0980 NC_007929.1 996533 997612 R COG0451 [MG] Nucleoside-diphosphate-sugar epimerases; UDP-glucuronate 4-epimerase complement(996533..997612) Lactobacillus salivarius UCC118 3976664 YP_535872.1 CDS LSL_0981 NC_007929.1 997618 999150 R COG2244 [R] Membrane protein involved in the export of O-antigen and teichoic acid; flippase; oligosaccharide translocase complement(997618..999150) Lactobacillus salivarius UCC118 3976665 YP_535873.1 CDS rfaG NC_007929.1 999171 1000232 R COG0438 [M] Glycosyltransferase; glycosyltransferase complement(999171..1000232) Lactobacillus salivarius UCC118 3977439 YP_535874.1 CDS rfaG NC_007929.1 1000257 1001372 R COG3754 [M] Lipopolysaccharide biosynthesis protein; glycosyltransferase complement(1000257..1001372) Lactobacillus salivarius UCC118 3977440 YP_535875.1 CDS rfaG NC_007929.1 1001469 1002584 R COG3754 [M] Lipopolysaccharide biosynthesis protein; glycosyltransferase complement(1001469..1002584) Lactobacillus salivarius UCC118 3977441 YP_535876.1 CDS LSL_0985 NC_007929.1 1002614 1003705 R hypothetical protein complement(1002614..1003705) Lactobacillus salivarius UCC118 3977442 YP_535877.1 CDS rfaG NC_007929.1 1003717 1004604 R COG0463 [M] Glycosyltransferases involved in cell wall biogenesis; glycosyltransferase complement(1003717..1004604) Lactobacillus salivarius UCC118 3977443 YP_535878.1 CDS rfaG NC_007929.1 1004617 1005483 R COG1216 [R] Predicted glycosyltransferases; glycosyltransferase complement(1004617..1005483) Lactobacillus salivarius UCC118 3977444 YP_535879.1 CDS rfaG NC_007929.1 1005497 1006603 R COG0438 [M] Glycosyltransferase; glycosyltransferase complement(1005497..1006603) Lactobacillus salivarius UCC118 3977445 YP_535880.1 CDS rfaG NC_007929.1 1006634 1007782 R COG0438 [M] Glycosyltransferase; glycosyltransferase complement(1006634..1007782) Lactobacillus salivarius UCC118 3977446 YP_535881.1 CDS rfaG NC_007929.1 1007820 1008968 R COG0438 [M] Glycosyltransferase; glycosyltransferase complement(1007820..1008968) Lactobacillus salivarius UCC118 3977447 YP_535882.1 CDS rfaG NC_007929.1 1008981 1010078 R COG0438 [M] Glycosyltransferase; glycosyltransferase complement(1008981..1010078) Lactobacillus salivarius UCC118 3977448 YP_535883.1 CDS wecD NC_007929.1 1010092 1010682 R COG0110 [R] acetyltransferase (isoleucine patch superfamily); acetyltransferase complement(1010092..1010682) Lactobacillus salivarius UCC118 3977449 YP_535884.1 CDS LSL_0993 NC_007929.1 1010679 1011326 R COG2148 [M] Sugar transferases involved in lipopolysaccharide synthesis; UDP-galactose phosphate transferase complement(1010679..1011326) Lactobacillus salivarius UCC118 3977450 YP_535885.1 CDS LSL_0994 NC_007929.1 1011376 1012572 R COG0399 [M] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; aminotransferase complement(1011376..1012572) Lactobacillus salivarius UCC118 3977451 YP_535886.1 CDS LSL_0995 NC_007929.1 1012569 1014458 R COG1086 [MG] Predicted nucleoside-diphosphate sugar epimerases; UDP-N-acetylglucosamine 4,6-dehydratase / UDP-D-quinovosamine 4-dehydrogenase complement(1012569..1014458) Lactobacillus salivarius UCC118 3977452 YP_535887.1 CDS LSL_0996 NC_007929.1 1014478 1015140 R COG0455 [D] ATPases involved in chromosome partitioning; capsular polysaccharide biosynthesis; tyrosine-protein kinase complement(1014478..1015140) Lactobacillus salivarius UCC118 3977453 YP_535888.1 CDS LSL_0997 NC_007929.1 1015145 1015888 R COG3944 [M] Capsular polysaccharide biosynthesis protein; capsular polysaccharide biosynthesis; chain length regulator complement(1015145..1015888) Lactobacillus salivarius UCC118 3977454 YP_535889.1 CDS wecD NC_007929.1 1016191 1016706 R COG0454 [KR] Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase complement(1016191..1016706) Lactobacillus salivarius UCC118 3977455 YP_535890.1 CDS LSL_0999 NC_007929.1 1016726 1018096 R COG0144 [J] tRNA and rRNA cytosine-C5-methylases; 23S rRNA m(5)C methyltransferase complement(1016726..1018096) Lactobacillus salivarius UCC118 3977456 YP_535891.1 CDS LSL_1000 NC_007929.1 1018106 1019083 R hypothetical protein complement(1018106..1019083) Lactobacillus salivarius UCC118 3977457 YP_535892.1 CDS LSL_1001 NC_007929.1 1019092 1019865 R COG1073 [R] Hydrolases of the alpha/beta superfamily; hypothetical protein complement(1019092..1019865) Lactobacillus salivarius UCC118 3977390 YP_535893.1 CDS LSL_1002 NC_007929.1 1020013 1020822 D COG0561 [R] Predicted hydrolases of the HAD superfamily; HAD superfamily hydrolase 1020013..1020822 Lactobacillus salivarius UCC118 3977391 YP_535894.1 CDS wecD NC_007929.1 1020863 1021390 R COG1670 [J] acetyltransferases, including N-acetylases of ribosomal proteins; acetyltransferase complement(1020863..1021390) Lactobacillus salivarius UCC118 3977392 YP_535895.1 CDS lysA NC_007929.1 1021410 1022702 R COG0019 [E] Diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(1021410..1022702) Lactobacillus salivarius UCC118 3977393 YP_535896.1 CDS LSL_1005 NC_007929.1 1022847 1023035 R 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown; 4-oxalocrotonate tautomerase complement(1022847..1023035) Lactobacillus salivarius UCC118 3977394 YP_535897.1 CDS LSL_1006 NC_007929.1 1023167 1024591 D COG4690 [E] Dipeptidase; dipeptidase A 1023167..1024591 Lactobacillus salivarius UCC118 3977395 YP_535898.1 CDS LSL_1007 NC_007929.1 1024604 1025500 D hypothetical protein 1024604..1025500 Lactobacillus salivarius UCC118 3977396 YP_535899.1 CDS LSL_1008 NC_007929.1 1025573 1026409 D COG2207 [K] AraC-type DNA-binding domain-containing proteins; AraC family transcriptional regulator 1025573..1026409 Lactobacillus salivarius UCC118 3977397 YP_535900.1 CDS LSL_1009 NC_007929.1 1026439 1027044 R hypothetical protein complement(1026439..1027044) Lactobacillus salivarius UCC118 3977398 YP_535901.1 CDS galA NC_007929.1 1027037 1029274 R COG3345 [G] alpha-galactosidase; alpha-galactosidase complement(1027037..1029274) Lactobacillus salivarius UCC118 3977399 YP_535902.1 CDS LSL_1011 NC_007929.1 1029276 1029392 R hypothetical protein complement(1029276..1029392) Lactobacillus salivarius UCC118 3977400 YP_535903.1 CDS wecD NC_007929.1 1029459 1029899 R COG0454 [KR] Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase complement(1029459..1029899) Lactobacillus salivarius UCC118 3977401 YP_535904.1 CDS ssl NC_007929.1 1029920 1032880 R COG1061 [KL] DNA or RNA helicases of superfamily II; DNA/RNA helicase complement(1029920..1032880) Lactobacillus salivarius UCC118 3977402 YP_535905.1 CDS mutT NC_007929.1 1032867 1033289 R COG0494 [LR] NTP pyrophosphohydrolases including oxidative damage repair enzymes; 7,8-dihydro-8-oxoguanine-triphosphatase complement(1032867..1033289) Lactobacillus salivarius UCC118 3977403 YP_535906.1 CDS LSL_1015 NC_007929.1 1033581 1034870 D COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase 1033581..1034870 Lactobacillus salivarius UCC118 3977404 YP_535907.1 CDS LSL_1016 NC_007929.1 1035017 1035763 R COG2200 [T] FOG: EAL domain; hypothetical protein complement(1035017..1035763) Lactobacillus salivarius UCC118 3977405 YP_535908.1 CDS LSL_1017 NC_007929.1 1035862 1036722 R COG2199 [T] FOG: GGDEF domain; hypothetical protein complement(1035862..1036722) Lactobacillus salivarius UCC118 3977406 YP_535909.1 CDS LSL_1018 NC_007929.1 1036709 1038781 R UDP-forming; cellulose synthase catalytic subunit complement(1036709..1038781) Lactobacillus salivarius UCC118 3977407 YP_535910.1 CDS LSL_1019 NC_007929.1 1038783 1040030 R COG1215 [M] Glycosyltransferases, probably involved in cell wall biogenesis; N-acetylglucosaminyltransferase complement(1038783..1040030) Lactobacillus salivarius UCC118 3977408 YP_535911.1 CDS LSL_1020 NC_007929.1 1040039 1041223 R COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein complement(1040039..1041223) Lactobacillus salivarius UCC118 3977409 YP_535912.1 CDS LSL_1021 NC_007929.1 1041220 1041609 R hypothetical protein complement(1041220..1041609) Lactobacillus salivarius UCC118 3977007 YP_535913.1 CDS LSL_1022 NC_007929.1 1041606 1043066 R hypothetical protein complement(1041606..1043066) Lactobacillus salivarius UCC118 3977008 YP_535914.1 CDS LSL_1023 NC_007929.1 1043078 1044133 R hypothetical protein complement(1043078..1044133) Lactobacillus salivarius UCC118 3977009 YP_535915.1 CDS LSL_1024 NC_007929.1 1044078 1045253 R COG2199 [T] FOG: GGDEF domain; response regulator complement(1044078..1045253) Lactobacillus salivarius UCC118 3977010 YP_535916.1 CDS LSL_1025 NC_007929.1 1045639 1046928 R COG2252 [R] Permeases; guanine-hypoxanthine permease complement(1045639..1046928) Lactobacillus salivarius UCC118 3977011 YP_535917.1 CDS ndh NC_007929.1 1047052 1048257 R COG1252 [C] NADH dehydrogenase, FAD-containing subunit; NADH dehydrogenase complement(1047052..1048257) Lactobacillus salivarius UCC118 3977012 YP_535918.1 CDS menA NC_007929.1 1048271 1049176 R catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(1048271..1049176) Lactobacillus salivarius UCC118 3977013 YP_535919.1 CDS LSL_1028 NC_007929.1 1049424 1050410 D COG0142 [H] Geranylgeranyl pyrophosphate synthase; farnesyl pyrophosphate synthetase / geranyltranstransferase / farnesyltransferase / heptaprenyl diphosphate synthase component II 1049424..1050410 Lactobacillus salivarius UCC118 3977014 YP_535920.1 CDS cydC NC_007929.1 1050451 1052211 R COG4987 [CO] ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components; transport ATP-binding protein complement(1050451..1052211) Lactobacillus salivarius UCC118 3977015 YP_535921.1 CDS cydD NC_007929.1 1052204 1053928 R COG4988 [CO] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components; transport ATP-binding protein complement(1052204..1053928) Lactobacillus salivarius UCC118 3977016 YP_535922.1 CDS cydB NC_007929.1 1053928 1054944 R COG1294 [C] Cytochrome bd-type quinol oxidase, subunit 2; cytochrome d ubiquinol oxidase subunit II complement(1053928..1054944) Lactobacillus salivarius UCC118 3977017 YP_535923.1 CDS cydA NC_007929.1 1054945 1056363 R COG1271 [C] Cytochrome bd-type quinol oxidase, subunit 1; cytochrome d ubiquinol oxidase subunit I complement(1054945..1056363) Lactobacillus salivarius UCC118 3977018 YP_535924.1 CDS asnA NC_007929.1 1056646 1057656 R catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA complement(1056646..1057656) Lactobacillus salivarius UCC118 3977019 YP_535925.1 CDS LSL_1034 NC_007929.1 1057944 1058915 D COG0513 [LKJ] Superfamily II DNA and RNA helicases; peptidoglycan binding protein 1057944..1058915 Lactobacillus salivarius UCC118 3977020 YP_535926.1 CDS LSL_1035 NC_007929.1 1059026 1059352 D COG0607 [P] Rhodanese-related sulfurtransferase; rhodanese-related sulfurtransferases 1059026..1059352 Lactobacillus salivarius UCC118 3977021 YP_535927.1 CDS LSL_1036 NC_007929.1 1059960 1060613 D peptidoglycan binding protein 1059960..1060613 Lactobacillus salivarius UCC118 3977022 YP_535928.1 CDS LSL_1037 NC_007929.1 1060687 1061544 R COG0639 [T] Diadenosine tetraphosphatase and related serine/threonine protein phosphatases; hypothetical protein complement(1060687..1061544) Lactobacillus salivarius UCC118 3977023 YP_535929.1 CDS LSL_1038 NC_007929.1 1061553 1062332 R COG1085 [C] Galactose-1-phosphate uridylyltransferase; hypothetical protein complement(1061553..1062332) Lactobacillus salivarius UCC118 3977024 YP_535930.1 CDS LSL_1039 NC_007929.1 1062483 1062956 R hypothetical protein complement(1062483..1062956) Lactobacillus salivarius UCC118 3977025 YP_535931.1 CDS draG NC_007929.1 1063106 1064092 D COG1397 [O] ADP-ribosylglycohydrolase; ADP-ribosylglycohydrolase 1063106..1064092 Lactobacillus salivarius UCC118 3976741 YP_535932.1 CDS LSL_1041 NC_007929.1 1064286 1065125 D COG0011 [S] Uncharacterized conserved protein; hypothetical protein 1064286..1065125 Lactobacillus salivarius UCC118 3976742 YP_535933.1 CDS ileS NC_007929.1 1065203 1067998 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(1065203..1067998) Lactobacillus salivarius UCC118 3976743 YP_535934.1 CDS divIVA NC_007929.1 1068270 1069037 R COG3599 [D] Cell division initiation protein; cell division initiation protein complement(1068270..1069037) Lactobacillus salivarius UCC118 3976744 YP_535935.1 CDS LSL_1044 NC_007929.1 1069060 1069848 R COG2302 [S] Uncharacterized conserved protein, contains S4-like domain; RNA binding protein complement(1069060..1069848) Lactobacillus salivarius UCC118 3976745 YP_535936.1 CDS LSL_1045 NC_007929.1 1069851 1070108 R COG0392 [S] Predicted integral membrane protein; integral membrane protein complement(1069851..1070108) Lactobacillus salivarius UCC118 3976746 YP_535937.1 CDS LSL_1046 NC_007929.1 1070136 1070588 R COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein complement(1070136..1070588) Lactobacillus salivarius UCC118 3976747 YP_535938.1 CDS ftsZ NC_007929.1 1070613 1071866 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(1070613..1071866) Lactobacillus salivarius UCC118 3976748 YP_535939.1 CDS ftsA NC_007929.1 1071892 1073289 R COG0849 [D] Actin-like ATPase involved in cell division; cell division protein complement(1071892..1073289) Lactobacillus salivarius UCC118 3976749 YP_535940.1 CDS ftsQ NC_007929.1 1073425 1074279 R COG1589 [M] Cell division septal protein; cell division protein complement(1073425..1074279) Lactobacillus salivarius UCC118 3976750 YP_535941.1 CDS murG NC_007929.1 1074314 1075411 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(1074314..1075411) Lactobacillus salivarius UCC118 3976751 YP_535942.1 CDS murD NC_007929.1 1075412 1076788 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(1075412..1076788) Lactobacillus salivarius UCC118 3976752 YP_535943.1 CDS mraY NC_007929.1 1076817 1077785 R COG0472 [M] UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(1076817..1077785) Lactobacillus salivarius UCC118 3976753 YP_535944.1 CDS LSL_1053 NC_007929.1 1077796 1079952 R COG0768 [M] Cell division protein FtsI/penicillin-binding protein 2; penicillin binding protein 2B complement(1077796..1079952) Lactobacillus salivarius UCC118 3976754 YP_535945.1 CDS LSL_1054 NC_007929.1 1079949 1080305 R cell division protein ftsL complement(1079949..1080305) Lactobacillus salivarius UCC118 3976755 YP_535946.1 CDS mraW NC_007929.1 1080326 1081270 R COG0275 [M] Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; S-adenosyl-methyltransferase MraW complement(1080326..1081270) Lactobacillus salivarius UCC118 3976756 YP_535947.1 CDS LSL_1056 NC_007929.1 1081281 1081712 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(1081281..1081712) Lactobacillus salivarius UCC118 3976757 YP_535948.1 CDS LSL_1057 NC_007929.1 1081929 1082294 R hypothetical protein complement(1081929..1082294) Lactobacillus salivarius UCC118 3976758 YP_535949.1 CDS lysC NC_007929.1 1082308 1083504 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive; aspartate kinase I complement(1082308..1083504) Lactobacillus salivarius UCC118 3976759 YP_535950.1 CDS LSL_1059 NC_007929.1 1083711 1083836 D hypothetical protein 1083711..1083836 Lactobacillus salivarius UCC118 3976760 YP_535951.1 CDS LSL_1060 NC_007929.1 1083881 1084816 R COG1073 [R] Hydrolases of the alpha/beta superfamily; cell surface hydrolase, membrane-bound complement(1083881..1084816) Lactobacillus salivarius UCC118 3977068 YP_535952.1 CDS LSL_1061 NC_007929.1 1084831 1085688 R COG0834 [ET] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; polar amino acid ABC transporter substrate-binding protein complement(1084831..1085688) Lactobacillus salivarius UCC118 3977069 YP_535953.1 CDS LSL_1062 NC_007929.1 1085706 1086344 R COG1126 [E] ABC-type polar amino acid transport system, ATPase component; polar amino acid ABC transporter ATP-binding protein complement(1085706..1086344) Lactobacillus salivarius UCC118 3977070 YP_535954.1 CDS LSL_1063 NC_007929.1 1086357 1086998 R COG0765 [E] ABC-type amino acid transport system, permease component; polar amino acid ABC transporter permease complement(1086357..1086998) Lactobacillus salivarius UCC118 3977071 YP_535955.1 CDS minD NC_007929.1 1087403 1088206 R COG2894 [D] Septum formation inhibitor-activating ATPase; cell division inhibitor complement(1087403..1088206) Lactobacillus salivarius UCC118 3977072 YP_535956.1 CDS minC NC_007929.1 1088208 1088879 R COG0850 [D] Septum formation inhibitor; cell division inhibitor complement(1088208..1088879) Lactobacillus salivarius UCC118 3977073 YP_535957.1 CDS mreD NC_007929.1 1088897 1089409 R COG1792 [M] Cell shape-determining protein; rod shape-determining protein complement(1088897..1089409) Lactobacillus salivarius UCC118 3977074 YP_535958.1 CDS mreC NC_007929.1 1089421 1090275 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(1089421..1090275) Lactobacillus salivarius UCC118 3977075 YP_535959.1 CDS mreB NC_007929.1 1090390 1091397 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(1090390..1091397) Lactobacillus salivarius UCC118 3977076 YP_535960.1 CDS cspC NC_007929.1 1091569 1091778 R COG1278 [K] Cold shock proteins; cold shock protein complement(1091569..1091778) Lactobacillus salivarius UCC118 3977077 YP_535961.1 CDS radC NC_007929.1 1091792 1092469 R COG2003 [L] DNA repair proteins; DNA repair protein complement(1091792..1092469) Lactobacillus salivarius UCC118 3977078 YP_535962.1 CDS folC NC_007929.1 1092523 1093824 R COG0285 [H] Folylpolyglutamate synthase; folylpolyglutamate synthase / dihydrofolate synthase complement(1092523..1093824) Lactobacillus salivarius UCC118 3977079 YP_535963.1 CDS valS NC_007929.1 1093919 1096579 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(1093919..1096579) Lactobacillus salivarius UCC118 3977080 YP_535964.1 CDS thiI NC_007929.1 1096885 1098102 R COG0301 [H] Thiamine biosynthesis ATP pyrophosphatase; thiamine biosynthesis protein complement(1096885..1098102) Lactobacillus salivarius UCC118 3977081 YP_535965.1 CDS nifS NC_007929.1 1098119 1099267 R COG1104 [E] Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; cysteine desulfurase / selenocysteine lyase complement(1098119..1099267) Lactobacillus salivarius UCC118 3977082 YP_535966.1 CDS LSL_1075 NC_007929.1 1099402 1101114 R acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation; septation ring formation regulator EzrA complement(1099402..1101114) Lactobacillus salivarius UCC118 3977083 YP_535967.1 CDS LSL_1076 NC_007929.1 1101298 1101747 D COG1956 [T] GAF domain-containing protein; GAF domain-containing protein 1101298..1101747 Lactobacillus salivarius UCC118 3977084 YP_535968.1 CDS rpsD NC_007929.1 1101963 1102568 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1101963..1102568 Lactobacillus salivarius UCC118 3977085 YP_535969.1 CDS LSL_1078 NC_007929.1 1102717 1103199 D hypothetical protein 1102717..1103199 Lactobacillus salivarius UCC118 3977086 YP_535970.1 CDS LSL_1079 NC_007929.1 1103221 1104492 D COG2256 [L] ATPase related to the helicase subunit of the Holliday junction resolvase; recombination factor protein RarA 1103221..1104492 Lactobacillus salivarius UCC118 3976581 YP_535971.1 CDS LSL_1080 NC_007929.1 1104777 1105082 D hypothetical protein 1104777..1105082 Lactobacillus salivarius UCC118 3976582 YP_535972.1 CDS LSL_1081 NC_007929.1 1105199 1105702 D COG0589 [T] Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein 1105199..1105702 Lactobacillus salivarius UCC118 3976583 YP_535973.1 CDS LSL_1082 NC_007929.1 1105749 1106300 R COG2094 [L] 3-methyladenine DNA glycosylase; DNA-3-methyladenine glycosylase complement(1105749..1106300) Lactobacillus salivarius UCC118 3976584 YP_535974.1 CDS ddl NC_007929.1 1106450 1107586 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A complement(1106450..1107586) Lactobacillus salivarius UCC118 3976585 YP_535975.1 CDS pepQ NC_007929.1 1107710 1108783 R COG0006 [E] Xaa-Pro aminopeptidase; Xaa-Pro dipeptidase complement(1107710..1108783) Lactobacillus salivarius UCC118 3976586 YP_535976.1 CDS LSL_1085 NC_007929.1 1109162 1111645 R COG3468 [MU] type V secretory pathway, adhesin AidA; surface protein complement(1109162..1111645) Lactobacillus salivarius UCC118 3976587 YP_535977.1 CDS LSL_1086 NC_007929.1 1111928 1112479 R COG0344 [S] Predicted membrane protein; hypothetical protein complement(1111928..1112479) Lactobacillus salivarius UCC118 3976588 YP_535978.1 CDS LSL_1087 NC_007929.1 1112482 1112925 R hypothetical protein complement(1112482..1112925) Lactobacillus salivarius UCC118 3976589 YP_535979.1 CDS LSL_1088 NC_007929.1 1113101 1115167 R COG0768 [M] Cell division protein FtsI/penicillin-binding protein 2; penicillin-binding protein complement(1113101..1115167) Lactobacillus salivarius UCC118 3976590 YP_535980.1 CDS LSL_1089 NC_007929.1 1115412 1118057 D COG0344 [S] Predicted membrane protein; hypothetical protein 1115412..1118057 Lactobacillus salivarius UCC118 3976591 YP_535981.1 CDS apt NC_007929.1 1118133 1118651 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(1118133..1118651) Lactobacillus salivarius UCC118 3976592 YP_535982.1 CDS recJ NC_007929.1 1118673 1121006 R COG0608 [L] Single-stranded DNA-specific exonuclease; single-stranded-DNA-specific exonuclease complement(1118673..1121006) Lactobacillus salivarius UCC118 3976593 YP_535983.1 CDS LSL_1092 NC_007929.1 1121017 1121826 R COG0300 [R] Short-chain dehydrogenases of various substrate specificities; Short chain dehydrogenase complement(1121017..1121826) Lactobacillus salivarius UCC118 3976594 YP_535984.1 CDS LSL_1093 NC_007929.1 1121823 1122776 R COG1234 [R] Metal-dependent hydrolases of the beta-lactamase superfamily III; ribonuclease Z complement(1121823..1122776) Lactobacillus salivarius UCC118 3976595 YP_535985.1 CDS LSL_1094 NC_007929.1 1122922 1123254 D hypothetical protein 1122922..1123254 Lactobacillus salivarius UCC118 3976596 YP_535986.1 CDS LSL_1095 NC_007929.1 1123333 1123587 D hypothetical protein 1123333..1123587 Lactobacillus salivarius UCC118 3976597 YP_535987.1 CDS LSL_1096 NC_007929.1 1123695 1125548 R COG1835 [I] Predicted acyltransferases; acyltransferase complement(1123695..1125548) Lactobacillus salivarius UCC118 3976598 YP_535988.1 CDS obgE NC_007929.1 1125579 1126877 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(1125579..1126877) Lactobacillus salivarius UCC118 3976599 YP_535989.1 CDS uvrC NC_007929.1 1127001 1128773 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(1127001..1128773) Lactobacillus salivarius UCC118 3977856 YP_535990.1 CDS serA NC_007929.1 1128911 1129867 D COG1052 [CHR] Lactate dehydrogenase and related dehydrogenases; glycerate dehydrogenase 1128911..1129867 Lactobacillus salivarius UCC118 3977857 YP_535991.1 CDS LSL_1100 NC_007929.1 1129948 1130085 D hypothetical protein 1129948..1130085 Lactobacillus salivarius UCC118 3977858 YP_535992.1 CDS LSL_1101 NC_007929.1 1130342 1130860 R COG0622 [R] Predicted phosphoesterase; phosphoesterase complement(1130342..1130860) Lactobacillus salivarius UCC118 3977860 YP_535993.1 CDS LSL_1102 NC_007929.1 1130860 1131459 R COG0127 [F] Xanthosine triphosphate pyrophosphatase; HAM1 protein complement(1130860..1131459) Lactobacillus salivarius UCC118 3977861 YP_535994.1 CDS LSL_1103 NC_007929.1 1131647 1132144 D hypothetical protein 1131647..1132144 Lactobacillus salivarius UCC118 3977862 YP_535995.1 CDS trxA NC_007929.1 1132191 1132502 R COG0526 [OC] Thiol-disulfide isomerase and thioredoxins; thioredoxin complement(1132191..1132502) Lactobacillus salivarius UCC118 3977863 YP_535996.1 CDS mutS NC_007929.1 1132574 1134934 R COG0249 [L] Mismatch repair ATPase (MutS family); DNA mismatch repair protein complement(1132574..1134934) Lactobacillus salivarius UCC118 3977864 YP_535997.1 CDS LSL_1106 NC_007929.1 1134951 1135445 R COG1286 [R] Uncharacterized membrane protein, required for colicin V production; hypothetical protein complement(1134951..1135445) Lactobacillus salivarius UCC118 3977865 YP_535998.1 CDS LSL_1107 NC_007929.1 1135458 1135703 R hypothetical protein complement(1135458..1135703) Lactobacillus salivarius UCC118 3977866 YP_535999.1 CDS LSL_1108 NC_007929.1 1135794 1136090 R COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein complement(1135794..1136090) Lactobacillus salivarius UCC118 3977867 YP_536000.1 CDS LSL_1109 NC_007929.1 1136102 1136533 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(1136102..1136533) Lactobacillus salivarius UCC118 3977868 YP_536001.1 CDS LSL_1110 NC_007929.1 1136545 1136805 R COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein complement(1136545..1136805) Lactobacillus salivarius UCC118 3977869 YP_536002.1 CDS alaS NC_007929.1 1136973 1139615 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(1136973..1139615) Lactobacillus salivarius UCC118 3977870 YP_536003.1 CDS srmB NC_007929.1 1139922 1141244 R COG0513 [LKJ] Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase complement(1139922..1141244) Lactobacillus salivarius UCC118 3977871 YP_536004.1 CDS LSL_1113 NC_007929.1 1141267 1142241 R COG0618 [R] Exopolyphosphatase-related proteins; phosphoesterase, DHH family protein complement(1141267..1142241) Lactobacillus salivarius UCC118 3977872 YP_536005.1 CDS ackA NC_007929.1 1142864 1144057 R COG0282 [C] Acetate kinase; acetate kinase complement(1142864..1144057) Lactobacillus salivarius UCC118 3977873 YP_536006.1 CDS LSL_1115 NC_007929.1 1144242 1144973 R COG0011 [S] Uncharacterized conserved protein; hypothetical protein complement(1144242..1144973) Lactobacillus salivarius UCC118 3976951 YP_536007.1 CDS LSL_1116 NC_007929.1 1144966 1146483 R COG1139 [C] Uncharacterized conserved protein containing a ferredoxin-like domain; iron-sulfur cluster-binding protein complement(1144966..1146483) Lactobacillus salivarius UCC118 3976952 YP_536008.1 CDS LSL_1117 NC_007929.1 1146484 1147290 R COG0247 [C] Fe-S oxidoreductase; hypothetical protein complement(1146484..1147290) Lactobacillus salivarius UCC118 3976953 YP_536009.1 CDS LSL_1118 NC_007929.1 1147613 1149049 R COG0531 [E] Amino acid transporters; amino acid permease complement(1147613..1149049) Lactobacillus salivarius UCC118 3976954 YP_536010.1 CDS LSL_1119 NC_007929.1 1149236 1149676 R hypothetical protein complement(1149236..1149676) Lactobacillus salivarius UCC118 3976955 YP_536011.1 CDS LSL_1120 NC_007929.1 1149845 1150297 R COG0589 [T] Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein complement(1149845..1150297) Lactobacillus salivarius UCC118 3976956 YP_536012.1 CDS LSL_1121 NC_007929.1 1150400 1150696 R hypothetical protein complement(1150400..1150696) Lactobacillus salivarius UCC118 3976957 YP_536013.1 CDS yajC NC_007929.1 1150849 1151229 R COG1862 [U] Preprotein translocase subunit YajC; protein translocase subunit complement(1150849..1151229) Lactobacillus salivarius UCC118 3976958 YP_536014.1 CDS tgt NC_007929.1 1151296 1152441 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(1151296..1152441) Lactobacillus salivarius UCC118 3976959 YP_536015.1 CDS queA NC_007929.1 1152457 1153500 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase complement(1152457..1153500) Lactobacillus salivarius UCC118 3976960 YP_536016.1 CDS ruvB NC_007929.1 1153506 1154516 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(1153506..1154516) Lactobacillus salivarius UCC118 3976961 YP_536017.1 CDS ruvA NC_007929.1 1154555 1155160 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(1154555..1155160) Lactobacillus salivarius UCC118 3976962 YP_536018.1 CDS mutL NC_007929.1 1155177 1157156 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(1155177..1157156) Lactobacillus salivarius UCC118 3976963 YP_536019.1 CDS mutS NC_007929.1 1157166 1159796 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(1157166..1159796) Lactobacillus salivarius UCC118 3976964 YP_536020.1 CDS LSL_1129 NC_007929.1 1159964 1161529 R protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase complement(1159964..1161529) Lactobacillus salivarius UCC118 3976965 YP_536021.1 CDS recA NC_007929.1 1161704 1162849 R COG0468 [L] RecA/RadA recombinase; recombinase A complement(1161704..1162849) Lactobacillus salivarius UCC118 3976966 YP_536022.1 CDS pgsA NC_007929.1 1163042 1163629 R COG0558 [I] Phosphatidylglycerophosphate synthase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(1163042..1163629) Lactobacillus salivarius UCC118 3976967 YP_536023.1 CDS LSL_1132 NC_007929.1 1163682 1164608 R COG0718 [S] Uncharacterized protein conserved in bacteria; transcriptional regulator complement(1163682..1164608) Lactobacillus salivarius UCC118 3976968 YP_536024.1 CDS fabG NC_007929.1 1164690 1165415 R COG1028 [IQR] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 3-oxoacyl-[acyl-carrier protein] reductase complement(1164690..1165415) Lactobacillus salivarius UCC118 3976969 YP_536025.1 CDS LSL_1134 NC_007929.1 1165421 1166722 R COG0612 [R] Predicted Zn-dependent peptidases; M16 family peptidase complement(1165421..1166722) Lactobacillus salivarius UCC118 3976970 YP_536026.1 CDS ftsK NC_007929.1 1168139 1170418 R COG1674 [D] DNA segregation ATPase FtsK/SpoIIIE and related proteins; cell division protein complement(1168139..1170418) Lactobacillus salivarius UCC118 3977875 YP_536027.1 CDS LSL_1136 NC_007929.1 1170455 1170967 R COG0219 [J] Predicted rRNA methylase (SpoU class); 23S rRNA methyltransferase complement(1170455..1170967) Lactobacillus salivarius UCC118 3977876 YP_536028.1 CDS LSL_1137 NC_007929.1 1171208 1172059 R COG0500 [QR] SAM-dependent methyltransferases; 23S rRNA m(1)G 745 methyltransferase complement(1171208..1172059) Lactobacillus salivarius UCC118 3977877 YP_536029.1 CDS LSL_1138 NC_007929.1 1172059 1172574 R COG0011 [S] Uncharacterized conserved protein; transcriptional regulator complement(1172059..1172574) Lactobacillus salivarius UCC118 3977878 YP_536030.1 CDS guaC NC_007929.1 1172799 1173776 D COG0516 [F] IMP dehydrogenase/GMP reductase; guanosine 5'-monophosphate oxidoreductase 1172799..1173776 Lactobacillus salivarius UCC118 3977879 YP_536031.1 CDS gltP NC_007929.1 1173980 1175257 D COG1301 [C] Na+/H+-dicarboxylate symporters; proton/sodium-glutamate symport protein 1173980..1175257 Lactobacillus salivarius UCC118 3977880 YP_536032.1 CDS LSL_1141 NC_007929.1 1175325 1175888 R copper homeostasis protein cutC complement(1175325..1175888) Lactobacillus salivarius UCC118 3977881 YP_536033.1 CDS LSL_1142 NC_007929.1 1175902 1176927 R COG2706 [G] 3-carboxymuconate cyclase; 6-phosphogluconolactonase complement(1175902..1176927) Lactobacillus salivarius UCC118 3977882 YP_536034.1 CDS LSL_1143 NC_007929.1 1177069 1177419 D COG3731 [G] Phosphotransferase system sorbitol-specific component IIA; PTS system, glucitol/sorbitol-specific IIA component 1177069..1177419 Lactobacillus salivarius UCC118 3977883 YP_536035.1 CDS glmM NC_007929.1 1177549 1178901 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(1177549..1178901) Lactobacillus salivarius UCC118 3977884 YP_536036.1 CDS LSL_1145 NC_007929.1 1178925 1180040 R COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein complement(1178925..1180040) Lactobacillus salivarius UCC118 3977885 YP_536037.1 CDS LSL_1146 NC_007929.1 1180037 1180885 R COG0011 [S] Uncharacterized conserved protein; hypothetical protein complement(1180037..1180885) Lactobacillus salivarius UCC118 3977886 YP_536038.1 CDS LSL_1147 NC_007929.1 1181118 1181801 D COG0344 [S] Predicted membrane protein; hypothetical protein 1181118..1181801 Lactobacillus salivarius UCC118 3977887 YP_536039.1 CDS murB NC_007929.1 1181836 1182735 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(1181836..1182735) Lactobacillus salivarius UCC118 3977888 YP_536040.1 CDS dnaQ NC_007929.1 1182884 1183417 D COG0847 [L] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases; DNA-directed DNA polymerase III, epsilon chain 1182884..1183417 Lactobacillus salivarius UCC118 3977889 YP_536041.1 CDS LSL_1150 NC_007929.1 1183489 1183941 R COG0802 [R] Predicted ATPase or kinase; ATP/GTP hydrolase complement(1183489..1183941) Lactobacillus salivarius UCC118 3977890 YP_536042.1 CDS pta NC_007929.1 1183945 1184922 R COG0280 [C] Phosphotransacetylase; phosphate acetyltransferase complement(1183945..1184922) Lactobacillus salivarius UCC118 3977891 YP_536043.1 CDS ung NC_007929.1 1184956 1185654 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(1184956..1185654) Lactobacillus salivarius UCC118 3977987 YP_536044.1 CDS LSL_1153 NC_007929.1 1185793 1186668 D COG0561 [R] Predicted hydrolases of the HAD superfamily; HAD superfamily hydrolase 1185793..1186668 Lactobacillus salivarius UCC118 3977988 YP_536045.1 CDS LSL_1154 NC_007929.1 1186698 1187237 D hypothetical protein 1186698..1187237 Lactobacillus salivarius UCC118 3977989 YP_536046.1 CDS smpB NC_007929.1 1187273 1187740 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(1187273..1187740) Lactobacillus salivarius UCC118 3977990 YP_536047.1 CDS LSL_1156 NC_007929.1 1187766 1190165 R COG0557 [K] Exoribonuclease R; ribonuclease R 1 complement(1187766..1190165) Lactobacillus salivarius UCC118 3977991 YP_536048.1 CDS secG NC_007929.1 1190238 1190474 R COG1314 [U] Preprotein translocase subunit SecG; preprotein translocase subunit SecG complement(1190238..1190474) Lactobacillus salivarius UCC118 3977992 YP_536049.1 CDS eriC NC_007929.1 1190534 1192072 R COG0038 [P] Chloride channel protein EriC; chloride channel protein complement(1190534..1192072) Lactobacillus salivarius UCC118 3977993 YP_536050.1 CDS LSL_1159 NC_007929.1 1192252 1193433 R COG0477 [GEPR] Permeases of the major facilitator superfamily; multidrug resistance protein complement(1192252..1193433) Lactobacillus salivarius UCC118 3977994 YP_536051.1 CDS baeS NC_007929.1 1193500 1194978 R COG0642 [T] signal transduction histidine kinase; two component system histidine kinase complement(1193500..1194978) Lactobacillus salivarius UCC118 3977995 YP_536052.1 CDS LSL_1161 NC_007929.1 1194978 1195697 R COG0745 [TK] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two-component response regulator complement(1194978..1195697) Lactobacillus salivarius UCC118 3977996 YP_536053.1 CDS dinP NC_007929.1 1195752 1196825 R COG0389 [L] Nucleotidyltransferase/DNA polymerase involved in DNA repair; DNA polymerase IV complement(1195752..1196825) Lactobacillus salivarius UCC118 3977997 YP_536054.1 CDS eno NC_007929.1 1196987 1198312 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(1196987..1198312) Lactobacillus salivarius UCC118 3977998 YP_536055.1 CDS tpiA NC_007929.1 1198426 1199181 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(1198426..1199181) Lactobacillus salivarius UCC118 3977999 YP_536056.1 CDS pgk NC_007929.1 1199234 1200436 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(1199234..1200436) Lactobacillus salivarius UCC118 3978000 YP_536057.1 CDS gapA NC_007929.1 1200542 1201555 R COG0057 [G] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; glyceraldehyde 3-phosphate dehydrogenase complement(1200542..1201555) Lactobacillus salivarius UCC118 3978001 YP_536058.1 CDS LSL_1167 NC_007929.1 1201618 1202646 R COG2390 [K] Transcriptional regulator, contains sigma factor-related N-terminal domain; central glycolytic genes regulator complement(1201618..1202646) Lactobacillus salivarius UCC118 3978002 YP_536059.1 CDS clpP NC_007929.1 1203248 1203841 D COG0740 [OU] Protease subunit of ATP-dependent Clp proteases; ATP-dependent Clp protease proteolytic subunit 1203248..1203841 Lactobacillus salivarius UCC118 3978004 YP_536060.1 CDS LSL_1169 NC_007929.1 1203891 1204838 R COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein complement(1203891..1204838) Lactobacillus salivarius UCC118 3978005 YP_536061.1 CDS LSL_1170 NC_007929.1 1204861 1205874 R COG0011 [S] Uncharacterized conserved protein; hypothetical protein complement(1204861..1205874) Lactobacillus salivarius UCC118 3977026 YP_536062.1 CDS LSL_1171 NC_007929.1 1205871 1206758 R COG1660 [R] Predicted P-loop-containing kinase; contains P-loop; hypothetical protein complement(1205871..1206758) Lactobacillus salivarius UCC118 3977027 YP_536063.1 CDS LSL_1172 NC_007929.1 1206936 1207577 R COG0702 [MG] Predicted nucleoside-diphosphate-sugar epimerases; oxidoreductase complement(1206936..1207577) Lactobacillus salivarius UCC118 3977028 YP_536064.1 CDS luxS NC_007929.1 1207601 1208071 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(1207601..1208071) Lactobacillus salivarius UCC118 3977029 YP_536065.1 CDS uvrA NC_007929.1 1208147 1210981 R COG0178 [L] Excinuclease ATPase subunit; excinuclease ABC subunit A complement(1208147..1210981) Lactobacillus salivarius UCC118 3977030 YP_536066.1 CDS uvrB NC_007929.1 1211000 1213000 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(1211000..1213000) Lactobacillus salivarius UCC118 3977031 YP_536067.1 CDS glmM NC_007929.1 1213148 1214875 R COG1109 [G] Phosphomannomutase; phosphoglucomutase complement(1213148..1214875) Lactobacillus salivarius UCC118 3977032 YP_536068.1 CDS lgt NC_007929.1 1214945 1215754 R COG0682 [M] Prolipoprotein diacylglyceryltransferase; prolipoprotein diacylglyceryl transferase complement(1214945..1215754) Lactobacillus salivarius UCC118 3977033 YP_536069.1 CDS hprK NC_007929.1 1215769 1216701 R catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase complement(1215769..1216701) Lactobacillus salivarius UCC118 3977034 YP_536070.1 CDS LSL_1179 NC_007929.1 1216774 1217127 R COG0344 [S] Predicted membrane protein; hypothetical protein complement(1216774..1217127) Lactobacillus salivarius UCC118 3977035 YP_536071.1 CDS LSL_1180 NC_007929.1 1217131 1217469 R COG0583 [K] Transcriptional regulator; stress-responsive transcriptional regulator PspC complement(1217131..1217469) Lactobacillus salivarius UCC118 3977036 YP_536072.1 CDS baeS NC_007929.1 1217482 1218867 R COG0642 [T] signal transduction histidine kinase; two component system histidine kinase complement(1217482..1218867) Lactobacillus salivarius UCC118 3977037 YP_536073.1 CDS LSL_1182 NC_007929.1 1218867 1219568 R COG0745 [TK] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; alkaline phosphatase synthesis transcriptional regulatory protein PhoP complement(1218867..1219568) Lactobacillus salivarius UCC118 3977038 YP_536074.1 CDS LSL_1183 NC_007929.1 1219584 1220711 R COG0265 [O] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; hypothetical protein complement(1219584..1220711) Lactobacillus salivarius UCC118 3977039 YP_536075.1 CDS LSL_1184 NC_007929.1 1220929 1222218 D COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase 1220929..1222218 Lactobacillus salivarius UCC118 3977040 YP_536076.1 CDS prfB NC_007929.1 1222388 1223455 R recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 complement(1222388..1223455) Lactobacillus salivarius UCC118 3977041 YP_536077.1 CDS secA NC_007929.1 1223594 1225957 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA complement(1223594..1225957) Lactobacillus salivarius UCC118 3977042 YP_536078.1 CDS LSL_1187 NC_007929.1 1226082 1227260 R COG2807 [P] Cyanate permease; major facilitator transporter complement(1226082..1227260) Lactobacillus salivarius UCC118 3977043 YP_536079.1 CDS LSL_1188 NC_007929.1 1227384 1227938 R COG1544 [J] Ribosome-associated protein Y (PSrp-1); ribosome-associated factor Y complement(1227384..1227938) Lactobacillus salivarius UCC118 3977044 YP_536080.1 CDS xerC NC_007929.1 1228181 1229326 R COG0582 [L] Integrase; phage integrase complement(1228181..1229326) Lactobacillus salivarius UCC118 3976875 YP_536081.1 CDS LSL_1190 NC_007929.1 1229718 1230119 R hypothetical protein complement(1229718..1230119) Lactobacillus salivarius UCC118 3976876 YP_536082.1 CDS LSL_1191 NC_007929.1 1230097 1230594 R COG0640 [K] Predicted transcriptional regulators; Cro/CI family phage transcriptional regulator complement(1230097..1230594) Lactobacillus salivarius UCC118 3976877 YP_536083.1 CDS LSL_1192 NC_007929.1 1230734 1230922 D phage repressor proteins 1230734..1230922 Lactobacillus salivarius UCC118 3976878 YP_536084.1 CDS LSL_1193 NC_007929.1 1230943 1231323 D phage immunity repressor 1230943..1231323 Lactobacillus salivarius UCC118 3976879 YP_536085.1 CDS LSL_1194 NC_007929.1 1231367 1231705 D hypothetical protein 1231367..1231705 Lactobacillus salivarius UCC118 3976880 YP_536086.1 CDS LSL_1195 NC_007929.1 1231720 1231938 D hypothetical protein 1231720..1231938 Lactobacillus salivarius UCC118 3976881 YP_536087.1 CDS LSL_1196 NC_007929.1 1231935 1232267 D hypothetical protein 1231935..1232267 Lactobacillus salivarius UCC118 3976882 YP_536088.1 CDS LSL_1197 NC_007929.1 1232261 1232389 D hypothetical protein 1232261..1232389 Lactobacillus salivarius UCC118 3976883 YP_536089.1 CDS LSL_1198 NC_007929.1 1232541 1232783 D hypothetical protein 1232541..1232783 Lactobacillus salivarius UCC118 3976884 YP_536090.1 CDS LSL_1199 NC_007929.1 1232735 1232929 R hypothetical protein complement(1232735..1232929) Lactobacillus salivarius UCC118 3976885 YP_536091.1 CDS LSL_1200 NC_007929.1 1232972 1233397 D hypothetical protein 1232972..1233397 Lactobacillus salivarius UCC118 3976886 YP_536092.1 CDS LSL_1201 NC_007929.1 1233402 1234172 D hypothetical protein 1233402..1234172 Lactobacillus salivarius UCC118 3976887 YP_536093.1 CDS LSL_1202 NC_007929.1 1234187 1235737 D COG0433 [R] Predicted ATPase; DNA primase 1234187..1235737 Lactobacillus salivarius UCC118 3976888 YP_536094.1 CDS LSL_1203 NC_007929.1 1236048 1236356 D hypothetical protein 1236048..1236356 Lactobacillus salivarius UCC118 3976889 YP_536095.1 CDS LSL_1204 NC_007929.1 1236415 1236855 D hypothetical protein 1236415..1236855 Lactobacillus salivarius UCC118 3976890 YP_536096.1 CDS LSL_1205 NC_007929.1 1236862 1237086 D hypothetical protein 1236862..1237086 Lactobacillus salivarius UCC118 3976891 YP_536097.1 CDS comFC NC_007929.1 1238432 1239118 R COG1040 [R] Predicted amidophosphoribosyltransferases; ComF operon protein 3 complement(1238432..1239118) Lactobacillus salivarius UCC118 3976892 YP_536098.1 CDS LSL_1207 NC_007929.1 1239115 1240452 R COG4098 [L] Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein); ComF operon protein 1 complement(1239115..1240452) Lactobacillus salivarius UCC118 3976721 YP_536099.1 CDS LSL_1208 NC_007929.1 1240532 1241623 R COG0472 [M] UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; undecaprenyl-phosphate alpha-N-acetylglucosaminephosphotransferase complement(1240532..1241623) Lactobacillus salivarius UCC118 3976722 YP_536100.1 CDS LSL_1209 NC_007929.1 1241774 1243603 R COG0531 [E] Amino acid transporters; amino acid permease complement(1241774..1243603) Lactobacillus salivarius UCC118 3976723 YP_536101.1 CDS LSL_1210 NC_007929.1 1243787 1246189 R COG0474 [P] Cation transport ATPase; cation-transporting ATPase complement(1243787..1246189) Lactobacillus salivarius UCC118 3976724 YP_536102.1 CDS groEL NC_007929.1 1246385 1248007 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL complement(1246385..1248007) Lactobacillus salivarius UCC118 3976725 YP_536103.1 CDS groS NC_007929.1 1248037 1248321 R COG0234 [O] Co-chaperonin GroES (HSP10); molecular chaperone GroES complement(1248037..1248321) Lactobacillus salivarius UCC118 3976726 YP_536104.1 CDS LSL_1213 NC_007929.1 1248505 1249146 D COG1266 [R] Predicted metal-dependent membrane protease; CAAX family protease 1248505..1249146 Lactobacillus salivarius UCC118 3976727 YP_536105.1 CDS LSL_1214 NC_007929.1 1249248 1249889 R modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex complement(1249248..1249889) Lactobacillus salivarius UCC118 3976728 YP_536106.1 CDS LSL_1215 NC_007929.1 1250063 1252012 D COG0488 [R] ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter, ATP-binding protein 1250063..1252012 Lactobacillus salivarius UCC118 3976729 YP_536107.1 CDS gcp NC_007929.1 1252076 1253107 R COG0533 [O] Metal-dependent proteases with possible chaperone activity; O-sialoglycoprotein endopeptidase complement(1252076..1253107) Lactobacillus salivarius UCC118 3976730 YP_536108.1 CDS rimI NC_007929.1 1253131 1253637 R COG0456 [R] acetyltransferases; ribosomal-protein-S18-alanine acetyltransferase complement(1253131..1253637) Lactobacillus salivarius UCC118 3976731 YP_536109.1 CDS LSL_1218 NC_007929.1 1253642 1254373 R COG1214 [O] Inactive homolog of metal-dependent proteases, molecular chaperone; glycoprotein endopeptidase complement(1253642..1254373) Lactobacillus salivarius UCC118 3976732 YP_536110.1 CDS ansB NC_007929.1 1254525 1255505 D COG0252 [EJ] L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D; L-asparaginase 1254525..1255505 Lactobacillus salivarius UCC118 3976733 YP_536111.1 CDS LSL_1220 NC_007929.1 1255572 1256309 R COG3884 [I] acyl-ACP thioesterase; acyl-acyl carrier protein thioesterase complement(1255572..1256309) Lactobacillus salivarius UCC118 3976734 YP_536112.1 CDS LSL_1221 NC_007929.1 1256321 1257202 R COG0313 [R] Predicted methyltransferases; tetrapyrrole (Corrin/Porphyrin) methylase family protein complement(1256321..1257202) Lactobacillus salivarius UCC118 3976735 YP_536113.1 CDS LSL_1222 NC_007929.1 1257202 1257546 R COG0718 [S] Uncharacterized protein conserved in bacteria; initiation-control protein complement(1257202..1257546) Lactobacillus salivarius UCC118 3976736 YP_536114.1 CDS holB NC_007929.1 1257561 1258553 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' complement(1257561..1258553) Lactobacillus salivarius UCC118 3976737 YP_536115.1 CDS tmk NC_007929.1 1258588 1259214 R COG0125 [F] Thymidylate kinase; thymidylate kinase complement(1258588..1259214) Lactobacillus salivarius UCC118 3976738 YP_536116.1 CDS LSL_1225 NC_007929.1 1259334 1259573 R hypothetical protein complement(1259334..1259573) Lactobacillus salivarius UCC118 3976739 YP_536117.1 CDS recR NC_007929.1 1259587 1260186 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(1259587..1260186) Lactobacillus salivarius UCC118 3976740 YP_536118.1 CDS LSL_1227 NC_007929.1 1260213 1260527 R COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein complement(1260213..1260527) Lactobacillus salivarius UCC118 3976422 YP_536119.1 CDS dnaX NC_007929.1 1260545 1262284 R COG2812 [L] DNA polymerase III, gamma/tau subunits; DNA polymerase III subunit gamma/tau complement(1260545..1262284) Lactobacillus salivarius UCC118 3976423 YP_536120.1 CDS LSL_1229 NC_007929.1 1262491 1262991 R COG0590 [FJ] Cytosine/adenosine deaminases; cytosine/adenosine deaminase complement(1262491..1262991) Lactobacillus salivarius UCC118 3976424 YP_536121.1 CDS grxC NC_007929.1 1263819 1264049 D COG0695 [O] Glutaredoxin and related proteins; glutaredoxin 1263819..1264049 Lactobacillus salivarius UCC118 3976426 YP_536122.1 CDS nrdI NC_007929.1 1264046 1264429 D in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 1264046..1264429 Lactobacillus salivarius UCC118 3976427 YP_536123.1 CDS nrdA NC_007929.1 1264410 1266581 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1264410..1266581 Lactobacillus salivarius UCC118 3976428 YP_536124.1 CDS nrdF NC_007929.1 1266599 1267579 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 1266599..1267579 Lactobacillus salivarius UCC118 3976429 YP_536125.1 CDS LSL_1234 NC_007929.1 1267656 1270229 R COG0011 [S] Uncharacterized conserved protein; hypothetical protein complement(1267656..1270229) Lactobacillus salivarius UCC118 3976430 YP_536126.1 CDS LSL_1236 NC_007929.1 1270315 1270758 R hypothetical protein complement(1270315..1270758) Lactobacillus salivarius UCC118 3976431 YP_536127.1 CDS rplL NC_007929.1 1270871 1271239 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(1270871..1271239) Lactobacillus salivarius UCC118 3976432 YP_536128.1 CDS rplJ NC_007929.1 1271311 1271814 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(1271311..1271814) Lactobacillus salivarius UCC118 3976433 YP_536129.1 CDS rplA NC_007929.1 1272059 1272751 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(1272059..1272751) Lactobacillus salivarius UCC118 3976434 YP_536130.1 CDS rplK NC_007929.1 1272854 1273279 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(1272854..1273279) Lactobacillus salivarius UCC118 3976435 YP_536131.1 CDS nusG NC_007929.1 1273402 1273962 R COG0250 [K] Transcription antiterminator; transcription antitermination protein complement(1273402..1273962) Lactobacillus salivarius UCC118 3976436 YP_536132.1 CDS LSL_1242 NC_007929.1 1274077 1274244 R protein translocase subunit secE complement(1274077..1274244) Lactobacillus salivarius UCC118 3976437 YP_536133.1 CDS rpmG NC_007929.1 1274264 1274416 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 complement(1274264..1274416) Lactobacillus salivarius UCC118 3976438 YP_536134.1 CDS LSL_1244 NC_007929.1 1274481 1275011 R COG3688 [R] Predicted RNA-binding protein containing a PIN domain; hypothetical protein complement(1274481..1275011) Lactobacillus salivarius UCC118 3976439 YP_536135.1 CDS spoU NC_007929.1 1275013 1275759 R COG0566 [J] rRNA methylases; tRNA/rRNA methyltransferase complement(1275013..1275759) Lactobacillus salivarius UCC118 3977277 YP_536136.1 CDS LSL_1246 NC_007929.1 1275759 1276166 R COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein complement(1275759..1276166) Lactobacillus salivarius UCC118 3977278 YP_536137.1 CDS cysS NC_007929.1 1276159 1277571 R COG0215 [J] Cysteinyl-tRNA synthetase; cysteinyl-tRNA synthetase complement(1276159..1277571) Lactobacillus salivarius UCC118 3977279 YP_536138.1 CDS gltX NC_007929.1 1277725 1279212 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(1277725..1279212) Lactobacillus salivarius UCC118 3977280 YP_536139.1 CDS LSL_1249 NC_007929.1 1279343 1280455 R COG4956 [R] Integral membrane protein (PIN domain superfamily); PilT family ATPase complement(1279343..1280455) Lactobacillus salivarius UCC118 3977281 YP_536140.1 CDS radA NC_007929.1 1280481 1281854 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(1280481..1281854) Lactobacillus salivarius UCC118 3977282 YP_536141.1 CDS dut NC_007929.1 1281872 1282408 R COG0756 [F] dUTPase; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(1281872..1282408) Lactobacillus salivarius UCC118 3977283 YP_536142.1 CDS wecD NC_007929.1 1282564 1282842 D acetyltransferase 1282564..1282842 Lactobacillus salivarius UCC118 3977284 YP_536143.1 CDS pepC NC_007929.1 1282931 1284265 D COG3579 [E] Aminopeptidase C; aminopeptidase C 1282931..1284265 Lactobacillus salivarius UCC118 3977285 YP_536144.1 CDS LSL_1254 NC_007929.1 1284475 1284828 D bacteriocin immunity protein 1284475..1284828 Lactobacillus salivarius UCC118 3977286 YP_536145.1 CDS gpmA NC_007929.1 1284995 1285669 R COG0588 [G] Phosphoglycerate mutase 1; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase complement(1284995..1285669) Lactobacillus salivarius UCC118 3977287 YP_536146.1 CDS LSL_1256 NC_007929.1 1285691 1286635 R COG0679 [R] Predicted permeases; malate permease complement(1285691..1286635) Lactobacillus salivarius UCC118 3977288 YP_536147.1 CDS fabH NC_007929.1 1286694 1287674 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III complement(1286694..1287674) Lactobacillus salivarius UCC118 3977289 YP_536148.1 CDS LSL_1258 NC_007929.1 1287897 1288334 R COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein complement(1287897..1288334) Lactobacillus salivarius UCC118 3977291 YP_536149.1 CDS LSL_1259 NC_007929.1 1288327 1290498 R COG2183 [K] Transcriptional accessory protein; contains S1 RNA binding domain; transcription accessory protein complement(1288327..1290498) Lactobacillus salivarius UCC118 3977292 YP_536150.1 CDS nadE NC_007929.1 1290568 1291395 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(1290568..1291395) Lactobacillus salivarius UCC118 3977293 YP_536151.1 CDS pncB NC_007929.1 1291415 1292881 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(1291415..1292881) Lactobacillus salivarius UCC118 3977294 YP_536152.1 CDS LSL_1262 NC_007929.1 1293033 1293767 D COG1922 [M] Teichoic acid biosynthesis proteins; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase 1293033..1293767 Lactobacillus salivarius UCC118 3977295 YP_536153.1 CDS LSL_1263 NC_007929.1 1293840 1294538 R COG1522 [K] Transcriptional regulators; GntR family transcriptional regulator complement(1293840..1294538) Lactobacillus salivarius UCC118 3976459 YP_536154.1 CDS proC NC_007929.1 1294554 1295348 R COG0345 [E] Pyrroline-5-carboxylate reductase; pyrroline-5-carboxylate reductase complement(1294554..1295348) Lactobacillus salivarius UCC118 3976460 YP_536155.1 CDS LSL_1265 NC_007929.1 1295740 1297209 R COG3104 [E] Dipeptide/tripeptide permease; di-/tripeptide transporter complement(1295740..1297209) Lactobacillus salivarius UCC118 3976463 YP_536156.1 CDS LSL_1266 NC_007929.1 1302751 1303635 R COG0344 [S] Predicted membrane protein; ribonuclease BN complement(1302751..1303635) Lactobacillus salivarius UCC118 3976467 YP_536157.1 CDS LSL_1267 NC_007929.1 1303653 1304096 R hypothetical protein complement(1303653..1304096) Lactobacillus salivarius UCC118 3976468 YP_536158.1 CDS galU NC_007929.1 1304213 1305085 R COG1210 [M] UDP-glucose pyrophosphorylase; UTP--glucose-1-phosphate uridylyltransferase complement(1304213..1305085) Lactobacillus salivarius UCC118 3976469 YP_536159.1 CDS map NC_007929.1 1305255 1306046 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase complement(1305255..1306046) Lactobacillus salivarius UCC118 3976470 YP_536160.1 CDS fldA NC_007929.1 1306203 1306658 D COG0716 [C] Flavodoxins; flavodoxin 1306203..1306658 Lactobacillus salivarius UCC118 3976471 YP_536161.1 CDS LSL_1271 NC_007929.1 1306658 1307068 D COG0344 [S] Predicted membrane protein; cell wall teichoic acid glycosylation protein gtcA 1306658..1307068 Lactobacillus salivarius UCC118 3976472 YP_536162.1 CDS LSL_1272 NC_007929.1 1307159 1310017 D COG0344 [S] Predicted membrane protein; hypothetical protein 1307159..1310017 Lactobacillus salivarius UCC118 3976609 YP_536163.1 CDS LSL_1273 NC_007929.1 1310074 1311060 R catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase complement(1310074..1311060) Lactobacillus salivarius UCC118 3976610 YP_536164.1 CDS LSL_1274 NC_007929.1 1311074 1311940 R hypothetical protein complement(1311074..1311940) Lactobacillus salivarius UCC118 3976611 YP_536165.1 CDS LSL_1275 NC_007929.1 1311958 1312752 R COG0640 [K] Predicted transcriptional regulators; transcriptional regulator complement(1311958..1312752) Lactobacillus salivarius UCC118 3976612 YP_536166.1 CDS wecB NC_007929.1 1312925 1314073 R COG0381 [M] UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase complement(1312925..1314073) Lactobacillus salivarius UCC118 3976613 YP_536167.1 CDS ampS NC_007929.1 1314193 1315377 D COG2309 [E] Leucyl aminopeptidase (aminopeptidase T); aminopeptidase S 1314193..1315377 Lactobacillus salivarius UCC118 3976614 YP_536168.1 CDS LSL_1278 NC_007929.1 1315689 1317296 D COG0531 [E] Amino acid transporters; amino acid permease 1315689..1317296 Lactobacillus salivarius UCC118 3976615 YP_536169.1 CDS LSL_1279 NC_007929.1 1317408 1318079 R COG0637 [R] Predicted phosphatase/phosphohexomutase; beta-phosphoglucomutase / glucose-1-phosphate phosphodismutase complement(1317408..1318079) Lactobacillus salivarius UCC118 3976616 YP_536170.1 CDS mapA NC_007929.1 1318089 1320353 R COG1554 [G] Trehalose and maltose hydrolases (possible phosphorylases); maltose phosphorylase complement(1318089..1320353) Lactobacillus salivarius UCC118 3976617 YP_536171.1 CDS galM NC_007929.1 1320368 1321360 R COG2017 [G] Galactose mutarotase and related enzymes; aldose 1-epimerase complement(1320368..1321360) Lactobacillus salivarius UCC118 3976618 YP_536172.1 CDS LSL_1282 NC_007929.1 1321364 1322719 R COG0477 [GEPR] Permeases of the major facilitator superfamily; sugar transporter complement(1321364..1322719) Lactobacillus salivarius UCC118 3976619 YP_536173.1 CDS malR NC_007929.1 1322875 1323870 R COG1522 [K] Transcriptional regulators; maltose operon transcriptional repressor complement(1322875..1323870) Lactobacillus salivarius UCC118 3976620 YP_536174.1 CDS kup NC_007929.1 1324010 1326034 R COG3158 [P] K+ transporter; Kup system potassium uptake protein complement(1324010..1326034) Lactobacillus salivarius UCC118 3976621 YP_536175.1 CDS LSL_1285 NC_007929.1 1326293 1326706 R hypothetical protein complement(1326293..1326706) Lactobacillus salivarius UCC118 3976623 YP_536176.1 CDS srmB NC_007929.1 1326739 1328019 R COG0513 [LKJ] Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase complement(1326739..1328019) Lactobacillus salivarius UCC118 3976624 YP_536177.1 CDS LSL_1287 NC_007929.1 1328038 1329048 R COG0673 [R] Predicted dehydrogenases and related proteins; oxidoreductase complement(1328038..1329048) Lactobacillus salivarius UCC118 3976625 YP_536178.1 CDS LSL_1288 NC_007929.1 1329287 1329646 D hypothetical protein 1329287..1329646 Lactobacillus salivarius UCC118 3976626 YP_536179.1 CDS amyA NC_007929.1 1329755 1331578 R COG0366 [G] Glycosidases; alpha-amylase complement(1329755..1331578) Lactobacillus salivarius UCC118 3976627 YP_536180.1 CDS glgP NC_007929.1 1331559 1333982 R COG0058 [G] Glucan phosphorylase; glycogen phosphorylase complement(1331559..1333982) Lactobacillus salivarius UCC118 3976542 YP_536181.1 CDS glgA NC_007929.1 1334011 1335441 R catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase complement(1334011..1335441) Lactobacillus salivarius UCC118 3976543 YP_536182.1 CDS glgC NC_007929.1 1335441 1336613 R COG0448 [G] ADP-glucose pyrophosphorylase; glucose-1-phosphate adenylyltransferase regulatory subunit complement(1335441..1336613) Lactobacillus salivarius UCC118 3976544 YP_536183.1 CDS glgC NC_007929.1 1336603 1337745 R catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase complement(1336603..1337745) Lactobacillus salivarius UCC118 3976545 YP_536184.1 CDS glgB NC_007929.1 1337847 1339796 R catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching enzyme complement(1337847..1339796) Lactobacillus salivarius UCC118 3976546 YP_536185.1 CDS LSL_1295 NC_007929.1 1340001 1341764 R COG0366 [G] Glycosidases; neopullulanase / cyclomaltodextrinase / maltogenic alpha-amylase complement(1340001..1341764) Lactobacillus salivarius UCC118 3976547 YP_536186.1 CDS LSL_1296 NC_007929.1 1341804 1342847 R hypothetical protein complement(1341804..1342847) Lactobacillus salivarius UCC118 3976548 YP_536187.1 CDS gdhA NC_007929.1 1342998 1344332 R converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase complement(1342998..1344332) Lactobacillus salivarius UCC118 3976549 YP_536188.1 CDS LSL_1298 NC_007929.1 1344519 1345892 R COG1012 [C] NAD-dependent aldehyde dehydrogenases; succinate-semialdehyde dehydrogenase [NADP+] complement(1344519..1345892) Lactobacillus salivarius UCC118 3976550 YP_536189.1 CDS wecD NC_007929.1 1346071 1346553 R COG0454 [KR] Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase complement(1346071..1346553) Lactobacillus salivarius UCC118 3976551 YP_536190.1 CDS LSL_1300 NC_007929.1 1346571 1346885 R hypothetical protein complement(1346571..1346885) Lactobacillus salivarius UCC118 3976552 YP_536191.1 CDS LSL_1301 NC_007929.1 1347518 1348807 R COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase complement(1347518..1348807) Lactobacillus salivarius UCC118 3976553 YP_536192.1 CDS mgtE NC_007929.1 1348992 1350359 R COG2239 [P] Mg/Co/Ni transporter MgtE (contains CBS domain); Mg2+ transporter complement(1348992..1350359) Lactobacillus salivarius UCC118 3976554 YP_536193.1 CDS rluD NC_007929.1 1350377 1351264 R COG0564 [J] Pseudouridylate synthases, 23S RNA-specific; ribosomal large subunit pseudouridine synthase D complement(1350377..1351264) Lactobacillus salivarius UCC118 3976555 YP_536194.1 CDS ppnK NC_007929.1 1351254 1352060 R catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase complement(1351254..1352060) Lactobacillus salivarius UCC118 3976556 YP_536195.1 CDS LSL_1305 NC_007929.1 1352081 1352725 R COG0718 [S] Uncharacterized protein conserved in bacteria; GTP pyrophosphokinase complement(1352081..1352725) Lactobacillus salivarius UCC118 3976557 YP_536196.1 CDS topB NC_007929.1 1352826 1354901 R COG0550 [L] Topoisomerase IA; DNA topoisomerase III complement(1352826..1354901) Lactobacillus salivarius UCC118 3976558 YP_536197.1 CDS wecD NC_007929.1 1354976 1355512 D COG0110 [R] acetyltransferase (isoleucine patch superfamily); acetyltransferase 1354976..1355512 Lactobacillus salivarius UCC118 3976559 YP_536198.1 CDS LSL_1308 NC_007929.1 1355556 1356890 R COG2233 [F] Xanthine/uracil permeases; xanthine permease complement(1355556..1356890) Lactobacillus salivarius UCC118 3976560 YP_536199.1 CDS xpt NC_007929.1 1356893 1357471 R Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase complement(1356893..1357471) Lactobacillus salivarius UCC118 3977665 YP_536200.1 CDS LSL_1310 NC_007929.1 1357680 1358336 R COG1705 [NU] Muramidase (flagellum-specific); muramidase complement(1357680..1358336) Lactobacillus salivarius UCC118 3977666 YP_536201.1 CDS LSL_1311 NC_007929.1 1358369 1358965 R COG0344 [S] Predicted membrane protein; hypothetical protein complement(1358369..1358965) Lactobacillus salivarius UCC118 3977667 YP_536202.1 CDS LSL_1312 NC_007929.1 1359107 1360075 R COG0679 [R] Predicted permeases; malate permease complement(1359107..1360075) Lactobacillus salivarius UCC118 3977668 YP_536203.1 CDS LSL_1313 NC_007929.1 1360119 1361744 R malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase complement(1360119..1361744) Lactobacillus salivarius UCC118 3977669 YP_536204.1 CDS LSL_1314 NC_007929.1 1361886 1362767 D COG0583 [K] Transcriptional regulator; LysR family transcriptional regulator 1361886..1362767 Lactobacillus salivarius UCC118 3977670 YP_536205.1 CDS LSL_1315 NC_007929.1 1362833 1363267 R COG0583 [K] Transcriptional regulator; MarR family transcriptional regulator complement(1362833..1363267) Lactobacillus salivarius UCC118 3977671 YP_536206.1 CDS LSL_1316 NC_007929.1 1363609 1364142 R COG0583 [K] Transcriptional regulator; TetR family transcriptional regulator complement(1363609..1364142) Lactobacillus salivarius UCC118 3977672 YP_536207.1 CDS LSL_1317 NC_007929.1 1364171 1364614 R COG0589 [T] Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein complement(1364171..1364614) Lactobacillus salivarius UCC118 3977673 YP_536208.1 CDS LSL_1318 NC_007929.1 1364738 1365184 R COG1395 [K] Predicted transcriptional regulator; CopAB ATPases metal-fist type repressor complement(1364738..1365184) Lactobacillus salivarius UCC118 3977674 YP_536209.1 CDS LSL_1321 NC_007929.1 1369336 1370541 D COG4086 [S] Predicted secreted protein; hypothetical protein 1369336..1370541 Lactobacillus salivarius UCC118 3977676 YP_536210.1 CDS LSL_1322 NC_007929.1 1370553 1371161 D COG0586 [S] Uncharacterized membrane-associated protein; alkaline phosphatase 1370553..1371161 Lactobacillus salivarius UCC118 3977677 YP_536211.1 CDS ackA NC_007929.1 1371226 1372422 R COG0282 [C] Acetate kinase; acetate kinase complement(1371226..1372422) Lactobacillus salivarius UCC118 3977678 YP_536212.1 CDS wecD NC_007929.1 1372504 1373073 R COG0110 [R] acetyltransferase (isoleucine patch superfamily); acetyltransferase complement(1372504..1373073) Lactobacillus salivarius UCC118 3977679 YP_536213.1 CDS LSL_1325 NC_007929.1 1373179 1374600 R COG0471 [P] Di- and tricarboxylate transporters; 2-oxoglutarate/malate translocator complement(1373179..1374600) Lactobacillus salivarius UCC118 3977680 YP_536214.1 CDS frdA NC_007929.1 1374693 1376078 R COG1053 [C] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; fumarate reductase flavoprotein subunit complement(1374693..1376078) Lactobacillus salivarius UCC118 3977681 YP_536215.1 CDS fumC NC_007929.1 1376098 1377480 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(1376098..1377480) Lactobacillus salivarius UCC118 3977682 YP_536216.1 CDS LSL_1328 NC_007929.1 1377774 1378067 D hypothetical protein 1377774..1378067 Lactobacillus salivarius UCC118 3977683 YP_536217.1 CDS LSL_1329 NC_007929.1 1378126 1379460 R COG1249 [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; pyridine nucleotide-disulphide oxidoreductase family protein complement(1378126..1379460) Lactobacillus salivarius UCC118 3976561 YP_536218.1 CDS arsC NC_007929.1 1379617 1380015 R COG1393 [P] Arsenate reductase and related proteins, glutaredoxin family; arsenate reductase complement(1379617..1380015) Lactobacillus salivarius UCC118 3976562 YP_536219.1 CDS nrdG NC_007929.1 1380243 1380923 R COG0602 [O] Organic radical activating enzymes; anaerobic ribonucleoside-triphosphate reductase activating protein complement(1380243..1380923) Lactobacillus salivarius UCC118 3976563 YP_536220.1 CDS nrdD NC_007929.1 1380913 1383090 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(1380913..1383090) Lactobacillus salivarius UCC118 3976564 YP_536221.1 CDS LSL_1333 NC_007929.1 1383272 1383829 D COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 1383272..1383829 Lactobacillus salivarius UCC118 3976565 YP_536222.1 CDS wecD NC_007929.1 1384398 1385021 R COG2388 [R] Predicted acetyltransferase; acetyltransferase complement(1384398..1385021) Lactobacillus salivarius UCC118 3976566 YP_536223.1 CDS mbp3 NC_007929.1 1385213 1387570 R mucus binding protein complement(1385213..1387570) Lactobacillus salivarius UCC118 3976567 YP_536224.1 CDS wecD NC_007929.1 1387947 1388315 R COG0454 [KR] Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase complement(1387947..1388315) Lactobacillus salivarius UCC118 3976568 YP_536225.1 CDS LSL_1337 NC_007929.1 1388411 1388554 R hypothetical protein complement(1388411..1388554) Lactobacillus salivarius UCC118 3976569 YP_536226.1 CDS LSL_1338 NC_007929.1 1388643 1389254 R DNA-binding protein complement(1388643..1389254) Lactobacillus salivarius UCC118 3976570 YP_536227.1 CDS LSL_1339 NC_007929.1 1389800 1390894 R COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase complement(1389800..1390894) Lactobacillus salivarius UCC118 3976571 YP_536228.1 CDS LSL_1340 NC_007929.1 1391274 1392290 R hypothetical protein complement(1391274..1392290) Lactobacillus salivarius UCC118 3976572 YP_536229.1 CDS trmA NC_007929.1 1392529 1393908 R COG2265 [J] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; tRNA (Uracil-5-) -methyltransferase complement(1392529..1393908) Lactobacillus salivarius UCC118 3976573 YP_536230.1 CDS LSL_1342 NC_007929.1 1394078 1395367 D COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase 1394078..1395367 Lactobacillus salivarius UCC118 3976574 YP_536231.1 CDS LSL_1343 NC_007929.1 1395504 1396523 R similar to YegS from E. coli; lipid kinase complement(1395504..1396523) Lactobacillus salivarius UCC118 3976575 YP_536232.1 CDS gatB NC_007929.1 1396556 1397989 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(1396556..1397989) Lactobacillus salivarius UCC118 3976576 YP_536233.1 CDS gatA NC_007929.1 1397989 1399452 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(1397989..1399452) Lactobacillus salivarius UCC118 3976577 YP_536234.1 CDS gatC NC_007929.1 1399455 1399754 R COG0721 [J] Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C complement(1399455..1399754) Lactobacillus salivarius UCC118 3976578 YP_536235.1 CDS LSL_1347 NC_007929.1 1399906 1401051 R COG4851 [R] Protein involved in sex pheromone biosynthesis; lipoprotein, pheromone precursor complement(1399906..1401051) Lactobacillus salivarius UCC118 3976579 YP_536236.1 CDS lig NC_007929.1 1401048 1403066 R COG0272 [L] NAD-dependent DNA ligase (contains BRCT domain type II); NAD-dependent DNA ligase complement(1401048..1403066) Lactobacillus salivarius UCC118 3976580 YP_536237.1 CDS pcrA NC_007929.1 1403083 1405317 R COG0210 [L] Superfamily I DNA and RNA helicases; ATP-dependent DNA helicase complement(1403083..1405317) Lactobacillus salivarius UCC118 3977153 YP_536238.1 CDS purK NC_007929.1 1405425 1406564 R COG0026 [F] Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase); phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit complement(1405425..1406564) Lactobacillus salivarius UCC118 3977154 YP_536239.1 CDS lysS NC_007929.1 1412321 1413808 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(1412321..1413808) Lactobacillus salivarius UCC118 3977161 YP_536240.1 CDS LSL_1352 NC_007929.1 1413902 1414894 R COG0042 [J] tRNA-dihydrouridine synthase; tRNA-dihydrouridine synthase complement(1413902..1414894) Lactobacillus salivarius UCC118 3977162 YP_536241.1 CDS ftsH NC_007929.1 1415935 1418013 R COG0465 [O] ATP-dependent Zn proteases; cell division protein complement(1415935..1418013) Lactobacillus salivarius UCC118 3977164 YP_536242.1 CDS hpt NC_007929.1 1418154 1418693 R COG0634 [F] Hypoxanthine-guanine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase complement(1418154..1418693) Lactobacillus salivarius UCC118 3977495 YP_536243.1 CDS LSL_1355 NC_007929.1 1418710 1420068 R COG0037 [D] Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; tRNA(Ile)-lysidine synthase TilS complement(1418710..1420068) Lactobacillus salivarius UCC118 3977496 YP_536244.1 CDS LSL_1356 NC_007929.1 1420126 1420590 R COG1098 [J] Predicted RNA binding protein (contains ribosomal protein S1 domain); hypothetical protein complement(1420126..1420590) Lactobacillus salivarius UCC118 3977497 YP_536245.1 CDS LSL_1357 NC_007929.1 1420679 1421074 R COG2919 [D] Septum formation initiator; cell division protein DIVIC complement(1420679..1421074) Lactobacillus salivarius UCC118 3977498 YP_536246.1 CDS LSL_1358 NC_007929.1 1421113 1421382 R COG1188 [J] Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog); heat shock protein 15 complement(1421113..1421382) Lactobacillus salivarius UCC118 3977499 YP_536247.1 CDS LSL_1359 NC_007929.1 1421382 1422959 R COG2244 [R] Membrane protein involved in the export of O-antigen and teichoic acid; polysaccharides export protein complement(1421382..1422959) Lactobacillus salivarius UCC118 3977500 YP_536248.1 CDS mfd NC_007929.1 1422969 1426493 R COG1197 [LK] Transcription-repair coupling factor (superfamily II helicase); transcription-repair coupling factor complement(1422969..1426493) Lactobacillus salivarius UCC118 3977501 YP_536249.1 CDS pth NC_007929.1 1426515 1427072 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(1426515..1427072) Lactobacillus salivarius UCC118 3977502 YP_536250.1 CDS ldh NC_007929.1 1427321 1428289 D COG0039 [C] Malate/lactate dehydrogenases; L-lactate dehydrogenase 1427321..1428289 Lactobacillus salivarius UCC118 3977503 YP_536251.1 CDS LSL_1363 NC_007929.1 1428614 1430887 R COG1787 [V] Predicted endonuclease distantly related to archaeal Holliday junction resolvase and Mrr-like restriction enzymes; hypothetical protein complement(1428614..1430887) Lactobacillus salivarius UCC118 3977504 YP_536252.1 CDS LSL_1364 NC_007929.1 1431056 1431694 D COG0517 [R] FOG: CBS domain; hypothetical protein 1431056..1431694 Lactobacillus salivarius UCC118 3977505 YP_536253.1 CDS apbA NC_007929.1 1432112 1433074 D COG1893 [H] Ketopantoate reductase; 2-dehydropantoate 2-reductase 1432112..1433074 Lactobacillus salivarius UCC118 3977506 YP_536254.1 CDS tyrS NC_007929.1 1433144 1434394 R COG0162 [J] Tyrosyl-tRNA synthetase; tyrosyl-tRNA synthetase complement(1433144..1434394) Lactobacillus salivarius UCC118 3977507 YP_536255.1 CDS fur NC_007929.1 1434677 1435120 R COG0735 [P] Fe2+/Zn2+ uptake regulation proteins; ferric uptake regulation protein complement(1434677..1435120) Lactobacillus salivarius UCC118 3977508 YP_536256.1 CDS LSL_1368 NC_007929.1 1435222 1435809 R COG1988 [R] Predicted membrane-bound metal-dependent hydrolases; hypothetical protein complement(1435222..1435809) Lactobacillus salivarius UCC118 3977509 YP_536257.1 CDS sbcC NC_007929.1 1435837 1438938 R COG0419 [L] ATPase involved in DNA repair; exonuclease complement(1435837..1438938) Lactobacillus salivarius UCC118 3977510 YP_536258.1 CDS sbcD NC_007929.1 1438935 1440050 R COG0420 [L] DNA repair exonuclease; exonuclease complement(1438935..1440050) Lactobacillus salivarius UCC118 3977511 YP_536259.1 CDS LSL_1371 NC_007929.1 1440534 1441103 D peptidoglycan binding protein 1440534..1441103 Lactobacillus salivarius UCC118 3977512 YP_536260.1 CDS LSL_1372 NC_007929.1 1441277 1443085 R COG0028 [EH] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; pyruvate oxidase complement(1441277..1443085) Lactobacillus salivarius UCC118 3977513 YP_536261.1 CDS ddpX NC_007929.1 1443201 1443764 R COG2173 [M] D-alanyl-D-alanine dipeptidase; D-alanyl-D-alanine dipeptidase complement(1443201..1443764) Lactobacillus salivarius UCC118 3977514 YP_536262.1 CDS LSL_1374 NC_007929.1 1444456 1445517 D COG0577 [V] ABC-type antimicrobial peptide transport system, permease component; ABC transporter permease 1444456..1445517 Lactobacillus salivarius UCC118 3976667 YP_536263.1 CDS LSL_1375 NC_007929.1 1445521 1446195 D COG1136 [V] ABC-type antimicrobial peptide transport system, ATPase component; ABC transporter, ATP-binding protein 1445521..1446195 Lactobacillus salivarius UCC118 3976668 YP_536264.1 CDS LSL_1376 NC_007929.1 1446294 1447052 D COG0778 [C] Nitroreductase; nitro/flavin reductase 1446294..1447052 Lactobacillus salivarius UCC118 3976669 YP_536265.1 CDS rep NC_007929.1 1447108 1449399 R COG0210 [L] Superfamily I DNA and RNA helicases; ATP-dependent DNA helicase complement(1447108..1449399) Lactobacillus salivarius UCC118 3976670 YP_536266.1 CDS napA NC_007929.1 1449684 1451540 D COG0475 [P] Kef-type K+ transport systems, membrane components; Na+/H+ antiporter 1449684..1451540 Lactobacillus salivarius UCC118 3976671 YP_536267.1 CDS LSL_1379 NC_007929.1 1451639 1452193 R hypothetical protein complement(1451639..1452193) Lactobacillus salivarius UCC118 3976672 YP_536268.1 CDS LSL_1381 NC_007929.1 1454149 1455438 D COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase 1454149..1455438 Lactobacillus salivarius UCC118 3976674 YP_536269.1 CDS LSL_1382 NC_007929.1 1455983 1456711 R COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein complement(1455983..1456711) Lactobacillus salivarius UCC118 3976675 YP_536270.1 CDS LSL_1383 NC_007929.1 1456708 1457448 R ABC transporter complement(1456708..1457448) Lactobacillus salivarius UCC118 3976676 YP_536271.1 CDS LSL_1384 NC_007929.1 1457448 1458356 R COG1131 [V] ABC-type multidrug transport system, ATPase component; ABC transporter, ATP-binding protein complement(1457448..1458356) Lactobacillus salivarius UCC118 3976677 YP_536272.1 CDS LSL_1385 NC_007929.1 1458528 1458731 D response regulator receiver 1458528..1458731 Lactobacillus salivarius UCC118 3976678 YP_536273.1 CDS LSL_1386 NC_007929.1 1458780 1460069 R COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase complement(1458780..1460069) Lactobacillus salivarius UCC118 3976679 YP_536274.1 CDS LSL_1387 NC_007929.1 1460314 1460877 R COG2020 [O] protein-S-isoprenylcysteine methyltransferase; hypothetical protein complement(1460314..1460877) Lactobacillus salivarius UCC118 3976680 YP_536275.1 CDS doc NC_007929.1 1461649 1462020 R COG3654 [R] Prophage maintenance system killer protein; death on curing protein complement(1461649..1462020) Lactobacillus salivarius UCC118 3976682 YP_536276.1 CDS LSL_1389 NC_007929.1 1462017 1462274 R hypothetical protein complement(1462017..1462274) Lactobacillus salivarius UCC118 3977723 YP_536277.1 CDS LSL_1390 NC_007929.1 1463295 1463855 R hypothetical protein complement(1463295..1463855) Lactobacillus salivarius UCC118 3977724 YP_536278.1 CDS LSL_1391 NC_007929.1 1464041 1465186 R hypothetical protein complement(1464041..1465186) Lactobacillus salivarius UCC118 3977725 YP_536279.1 CDS LSL_1392 NC_007929.1 1465187 1465660 R hypothetical protein complement(1465187..1465660) Lactobacillus salivarius UCC118 3977726 YP_536280.1 CDS LSL_1393 NC_007929.1 1465644 1466138 R hypothetical protein complement(1465644..1466138) Lactobacillus salivarius UCC118 3977727 YP_536281.1 CDS LSL_1394 NC_007929.1 1466196 1466624 R hypothetical protein complement(1466196..1466624) Lactobacillus salivarius UCC118 3977728 YP_536282.1 CDS LSL_1395 NC_007929.1 1466726 1466893 R hypothetical protein complement(1466726..1466893) Lactobacillus salivarius UCC118 3977729 YP_536283.1 CDS LSL_1396 NC_007929.1 1466969 1467079 R hypothetical protein complement(1466969..1467079) Lactobacillus salivarius UCC118 3977730 YP_536284.1 CDS LSL_1397 NC_007929.1 1468364 1469218 R COG1028 [IQR] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); dehydrogenase complement(1468364..1469218) Lactobacillus salivarius UCC118 3977732 YP_536285.1 CDS LSL_1398 NC_007929.1 1469230 1469799 R COG1658 [L] Small primase-like proteins (Toprim domain); ribonuclease M5 complement(1469230..1469799) Lactobacillus salivarius UCC118 3977733 YP_536286.1 CDS LSL_1399 NC_007929.1 1469814 1470062 R hypothetical protein complement(1469814..1470062) Lactobacillus salivarius UCC118 3977734 YP_536287.1 CDS LSL_1400 NC_007929.1 1471089 1471232 R hypothetical protein complement(1471089..1471232) Lactobacillus salivarius UCC118 3977736 YP_536288.1 CDS LSL_1401 NC_007929.1 1471249 1471695 R hypothetical protein complement(1471249..1471695) Lactobacillus salivarius UCC118 3977737 YP_536289.1 CDS rpsI NC_007929.1 1477906 1478298 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(1477906..1478298) Lactobacillus salivarius UCC118 3977739 YP_536290.1 CDS rplM NC_007929.1 1478312 1478755 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(1478312..1478755) Lactobacillus salivarius UCC118 3977704 YP_536291.1 CDS truA NC_007929.1 1478890 1479660 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(1478890..1479660) Lactobacillus salivarius UCC118 3977705 YP_536292.1 CDS cbiQ NC_007929.1 1479676 1480470 R COG0619 [P] ABC-type cobalt transport system, permease component CbiQ and related transporters; cobalt transport permease complement(1479676..1480470) Lactobacillus salivarius UCC118 3977706 YP_536293.1 CDS cbiO NC_007929.1 1480463 1481332 R COG1122 [P] ABC-type cobalt transport system, ATPase component; cobalt transport ATP-binding protein complement(1480463..1481332) Lactobacillus salivarius UCC118 3977707 YP_536294.1 CDS cbiO NC_007929.1 1481308 1482156 R COG1122 [P] ABC-type cobalt transport system, ATPase component; cobalt transport ATP-binding protein complement(1481308..1482156) Lactobacillus salivarius UCC118 3977708 YP_536295.1 CDS rplQ NC_007929.1 1482471 1482854 R COG0203 [J] Ribosomal protein L17; 50S ribosomal protein L17P complement(1482471..1482854) Lactobacillus salivarius UCC118 3977709 YP_536296.1 CDS rpoA NC_007929.1 1482888 1483832 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(1482888..1483832) Lactobacillus salivarius UCC118 3977710 YP_536297.1 CDS rpsK NC_007929.1 1483917 1484303 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(1483917..1484303) Lactobacillus salivarius UCC118 3977711 YP_536298.1 CDS rpsM NC_007929.1 1484331 1484696 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(1484331..1484696) Lactobacillus salivarius UCC118 3977712 YP_536299.1 CDS rpmJ NC_007929.1 1484722 1484835 R COG0257 [J] Ribosomal protein L36; 50S ribosomal protein L36P complement(1484722..1484835) Lactobacillus salivarius UCC118 3977713 YP_536300.1 CDS infA NC_007929.1 1484871 1485089 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(1484871..1485089) Lactobacillus salivarius UCC118 3977714 YP_536301.1 CDS adk NC_007929.1 1485304 1485963 R COG0563 [F] Adenylate kinase and related kinases; adenylate kinase / nucleoside-diphosphate kinase complement(1485304..1485963) Lactobacillus salivarius UCC118 3977715 YP_536302.1 CDS secY NC_007929.1 1486063 1487361 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(1486063..1487361) Lactobacillus salivarius UCC118 3977716 YP_536303.1 CDS rplO NC_007929.1 1487364 1487798 R COG0200 [J] Ribosomal protein L15; 50S ribosomal protein L15P complement(1487364..1487798) Lactobacillus salivarius UCC118 3977717 YP_536304.1 CDS rpmD NC_007929.1 1487834 1488016 R COG1841 [J] Ribosomal protein L30/L7E; 50S ribosomal protein L30P complement(1487834..1488016) Lactobacillus salivarius UCC118 3977718 YP_536305.1 CDS rpsE NC_007929.1 1488030 1488530 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(1488030..1488530) Lactobacillus salivarius UCC118 3977719 YP_536306.1 CDS rplR NC_007929.1 1488552 1488908 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(1488552..1488908) Lactobacillus salivarius UCC118 3977720 YP_536307.1 CDS rplF NC_007929.1 1488953 1489489 R COG0097 [J] Ribosomal protein L6P/L9E; 50S ribosomal protein L6P complement(1488953..1489489) Lactobacillus salivarius UCC118 3977721 YP_536308.1 CDS rpsH NC_007929.1 1489522 1489920 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(1489522..1489920) Lactobacillus salivarius UCC118 3977722 YP_536309.1 CDS rpsN NC_007929.1 1489955 1490140 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 complement(1489955..1490140) Lactobacillus salivarius UCC118 3977684 YP_536310.1 CDS rplE NC_007929.1 1490153 1490695 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(1490153..1490695) Lactobacillus salivarius UCC118 3977685 YP_536311.1 CDS rplX NC_007929.1 1490720 1491025 R COG0198 [J] Ribosomal protein L24; 50S ribosomal protein L24P complement(1490720..1491025) Lactobacillus salivarius UCC118 3977686 YP_536312.1 CDS rplN NC_007929.1 1491060 1491428 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(1491060..1491428) Lactobacillus salivarius UCC118 3977687 YP_536313.1 CDS rpsQ NC_007929.1 1491487 1491753 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(1491487..1491753) Lactobacillus salivarius UCC118 3977688 YP_536314.1 CDS rpmC NC_007929.1 1491780 1491974 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(1491780..1491974) Lactobacillus salivarius UCC118 3977689 YP_536315.1 CDS rplP NC_007929.1 1491964 1492398 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(1491964..1492398) Lactobacillus salivarius UCC118 3977690 YP_536316.1 CDS rpsC NC_007929.1 1492402 1493058 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(1492402..1493058) Lactobacillus salivarius UCC118 3977691 YP_536317.1 CDS rplV NC_007929.1 1493072 1493419 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(1493072..1493419) Lactobacillus salivarius UCC118 3977692 YP_536318.1 CDS rpsS NC_007929.1 1493437 1493718 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(1493437..1493718) Lactobacillus salivarius UCC118 3977693 YP_536319.1 CDS rplB NC_007929.1 1493766 1494599 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(1493766..1494599) Lactobacillus salivarius UCC118 3977694 YP_536320.1 CDS rplW NC_007929.1 1494625 1494909 R COG0089 [J] Ribosomal protein L23; 50S ribosomal protein L23P complement(1494625..1494909) Lactobacillus salivarius UCC118 3977695 YP_536321.1 CDS rplD NC_007929.1 1494909 1495532 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(1494909..1495532) Lactobacillus salivarius UCC118 3977696 YP_536322.1 CDS rplC NC_007929.1 1495557 1496180 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(1495557..1496180) Lactobacillus salivarius UCC118 3977697 YP_536323.1 CDS rpsJ NC_007929.1 1496224 1496532 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(1496224..1496532) Lactobacillus salivarius UCC118 3977698 YP_536324.1 CDS hflX NC_007929.1 1496822 1498081 D COG2262 [R] GTPases; GTP-binding protein 1496822..1498081 Lactobacillus salivarius UCC118 3977699 YP_536325.1 CDS LSL_1438 NC_007929.1 1498209 1499045 R COG1522 [K] Transcriptional regulators; RpiR family transcriptional regulator complement(1498209..1499045) Lactobacillus salivarius UCC118 3977700 YP_536326.1 CDS rpiA NC_007929.1 1499177 1499854 D COG0120 [G] Ribose 5-phosphate isomerase; ribose 5-phosphate isomerase 1499177..1499854 Lactobacillus salivarius UCC118 3977701 YP_536327.1 CDS LSL_1440 NC_007929.1 1499847 1500824 D COG0673 [R] Predicted dehydrogenases and related proteins; NAD-dependent oxidoreductase 1499847..1500824 Lactobacillus salivarius UCC118 3977702 YP_536328.1 CDS LSL_1441 NC_007929.1 1500879 1501271 R hypothetical protein complement(1500879..1501271) Lactobacillus salivarius UCC118 3977703 YP_536329.1 CDS LSL_1442 NC_007929.1 1501521 1502840 D COG0531 [E] Amino acid transporters; amino acid permease 1501521..1502840 Lactobacillus salivarius UCC118 3977646 YP_536330.1 CDS glnP NC_007929.1 1502887 1503540 R COG0765 [E] ABC-type amino acid transport system, permease component; glutamine transport system permease complement(1502887..1503540) Lactobacillus salivarius UCC118 3977647 YP_536331.1 CDS glnM NC_007929.1 1503561 1504199 R COG0765 [E] ABC-type amino acid transport system, permease component; glutamine transport system permease complement(1503561..1504199) Lactobacillus salivarius UCC118 3977648 YP_536332.1 CDS glnH NC_007929.1 1504196 1505026 R COG0834 [ET] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; glutamine-binding protein complement(1504196..1505026) Lactobacillus salivarius UCC118 3977649 YP_536333.1 CDS glnQ NC_007929.1 1505042 1505779 R COG1126 [E] ABC-type polar amino acid transport system, ATPase component; glutamine transport ATP-binding protein complement(1505042..1505779) Lactobacillus salivarius UCC118 3977650 YP_536334.1 CDS LSL_1447 NC_007929.1 1505996 1506436 R hypothetical protein complement(1505996..1506436) Lactobacillus salivarius UCC118 3977651 YP_536335.1 CDS LSL_1448 NC_007929.1 1506582 1507499 R hypothetical protein complement(1506582..1507499) Lactobacillus salivarius UCC118 3977652 YP_536336.1 CDS LSL_1449 NC_007929.1 1507515 1507994 R COG0744 [M] Membrane carboxypeptidase (penicillin-binding protein); hypothetical protein complement(1507515..1507994) Lactobacillus salivarius UCC118 3977653 YP_536337.1 CDS fur NC_007929.1 1508093 1508524 R COG0735 [P] Fe2+/Zn2+ uptake regulation proteins; ferric uptake regulation protein complement(1508093..1508524) Lactobacillus salivarius UCC118 3977654 YP_536338.1 CDS LSL_1451 NC_007929.1 1508743 1510140 D COG0531 [E] Amino acid transporters; amino acid permease 1508743..1510140 Lactobacillus salivarius UCC118 3977655 YP_536339.1 CDS guaB NC_007929.1 1510273 1511757 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase complement(1510273..1511757) Lactobacillus salivarius UCC118 3977656 YP_536340.1 CDS ssl NC_007929.1 1511924 1514779 R COG1061 [KL] DNA or RNA helicases of superfamily II; DNA/RNA helicase complement(1511924..1514779) Lactobacillus salivarius UCC118 3977657 YP_536341.1 CDS LSL_1454 NC_007929.1 1514805 1515584 R COG2365 [T] Protein tyrosine/serine phosphatase; protein tyrosine phosphatase complement(1514805..1515584) Lactobacillus salivarius UCC118 3977658 YP_536342.1 CDS LSL_1455 NC_007929.1 1515664 1516983 R COG1253 [R] Hemolysins and related proteins containing CBS domains; magnesium and cobalt efflux protein corC complement(1515664..1516983) Lactobacillus salivarius UCC118 3977659 YP_536343.1 CDS LSL_1456 NC_007929.1 1517109 1517594 R hypothetical protein complement(1517109..1517594) Lactobacillus salivarius UCC118 3977660 YP_536344.1 CDS rluD NC_007929.1 1517675 1518589 R COG0564 [J] Pseudouridylate synthases, 23S RNA-specific; ribosomal large subunit pseudouridine synthase D complement(1517675..1518589) Lactobacillus salivarius UCC118 3977661 YP_536345.1 CDS LSL_1458 NC_007929.1 1518713 1519933 R COG0577 [V] ABC-type antimicrobial peptide transport system, permease component; ABC transporter permease complement(1518713..1519933) Lactobacillus salivarius UCC118 3977662 YP_536346.1 CDS LSL_1459 NC_007929.1 1519933 1520616 R COG1136 [V] ABC-type antimicrobial peptide transport system, ATPase component; ABC transporter, ATP-binding protein complement(1519933..1520616) Lactobacillus salivarius UCC118 3977663 YP_536347.1 CDS LSL_1460 NC_007929.1 1520609 1521682 R COG0845 [M] Membrane-fusion protein; hypothetical protein complement(1520609..1521682) Lactobacillus salivarius UCC118 3977664 YP_536348.1 CDS LSL_1461 NC_007929.1 1521868 1522734 R COG1940 [KG] Transcriptional regulator/sugar kinase; fructokinase complement(1521868..1522734) Lactobacillus salivarius UCC118 3977817 YP_536349.1 CDS LSL_1462 NC_007929.1 1523012 1524349 D COG0534 [V] Na+-driven multidrug efflux pump; Na+ driven multidrug efflux pump 1523012..1524349 Lactobacillus salivarius UCC118 3977818 YP_536350.1 CDS LSL_1463 NC_007929.1 1524346 1524732 D COG0346 [E] Lactoylglutathione lyase and related lyases; lactoylglutathione lyase family protein 1524346..1524732 Lactobacillus salivarius UCC118 3977819 YP_536351.1 CDS LSL_1464 NC_007929.1 1524837 1525511 R COG4814 [R] Uncharacterized protein with an alpha/beta hydrolase fold; cell surface hydrolase complement(1524837..1525511) Lactobacillus salivarius UCC118 3977820 YP_536352.1 CDS nagB NC_007929.1 1525773 1526477 R COG0363 [G] 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; glucosamine-6-phosphate isomerase complement(1525773..1526477) Lactobacillus salivarius UCC118 3977821 YP_536353.1 CDS nagA NC_007929.1 1526643 1527779 D COG1820 [G] N-acetylglucosamine-6-phosphate deacetylase; N-acetylglucosamine-6-phosphate deacetylase 1526643..1527779 Lactobacillus salivarius UCC118 3977822 YP_536354.1 CDS LSL_1467 NC_007929.1 1527832 1528968 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(1527832..1528968) Lactobacillus salivarius UCC118 3977823 YP_536355.1 CDS fabG NC_007929.1 1529115 1529873 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase complement(1529115..1529873) Lactobacillus salivarius UCC118 3977824 YP_536356.1 CDS LSL_1469 NC_007929.1 1529873 1530100 R hypothetical protein complement(1529873..1530100) Lactobacillus salivarius UCC118 3977825 YP_536357.1 CDS LSL_1470 NC_007929.1 1530114 1530611 R COG0344 [S] Predicted membrane protein; hypothetical protein complement(1530114..1530611) Lactobacillus salivarius UCC118 3977826 YP_536358.1 CDS LSL_1471 NC_007929.1 1531201 1532490 R COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase complement(1531201..1532490) Lactobacillus salivarius UCC118 3977827 YP_536359.1 CDS LSL_1472 NC_007929.1 1532627 1533499 R COG0718 [S] Uncharacterized protein conserved in bacteria; DegV family protein complement(1532627..1533499) Lactobacillus salivarius UCC118 3977828 YP_536360.1 CDS crcB NC_007929.1 1533571 1533915 R COG0239 [D] Integral membrane protein possibly involved in chromosome condensation; CrcB family protein complement(1533571..1533915) Lactobacillus salivarius UCC118 3977829 YP_536361.1 CDS crcB NC_007929.1 1533912 1534301 R COG0239 [D] Integral membrane protein possibly involved in chromosome condensation; CrcB family protein complement(1533912..1534301) Lactobacillus salivarius UCC118 3977830 YP_536362.1 CDS trxA NC_007929.1 1534359 1534682 R COG0526 [OC] Thiol-disulfide isomerase and thioredoxins; thioredoxin complement(1534359..1534682) Lactobacillus salivarius UCC118 3977831 YP_536363.1 CDS LSL_1476 NC_007929.1 1534756 1535589 R COG0561 [R] Predicted hydrolases of the HAD superfamily; HAD superfamily hydrolase complement(1534756..1535589) Lactobacillus salivarius UCC118 3977832 YP_536364.1 CDS LSL_1477 NC_007929.1 1535689 1536825 R COG0583 [K] Transcriptional regulator; LytR family transcriptional regulator complement(1535689..1536825) Lactobacillus salivarius UCC118 3977833 YP_536365.1 CDS LSL_1478 NC_007929.1 1537024 1537467 R COG0011 [S] Uncharacterized conserved protein; hypothetical protein complement(1537024..1537467) Lactobacillus salivarius UCC118 3977834 YP_536366.1 CDS LSL_1479 NC_007929.1 1537482 1538231 R COG0011 [S] Uncharacterized conserved protein; hypothetical protein complement(1537482..1538231) Lactobacillus salivarius UCC118 3977835 YP_536367.1 CDS cspC NC_007929.1 1538345 1538545 R COG1278 [K] Cold shock proteins; cold shock protein complement(1538345..1538545) Lactobacillus salivarius UCC118 3977836 YP_536368.1 CDS troR NC_007929.1 1538693 1539340 R COG1321 [K] Mn-dependent transcriptional regulator; Iron-dependent repressor complement(1538693..1539340) Lactobacillus salivarius UCC118 3977798 YP_536369.1 CDS rluD NC_007929.1 1539467 1540357 R COG0564 [J] Pseudouridylate synthases, 23S RNA-specific; ribosomal large subunit pseudouridine synthase D complement(1539467..1540357) Lactobacillus salivarius UCC118 3977799 YP_536370.1 CDS LSL_1483 NC_007929.1 1540360 1541247 R hypothetical protein complement(1540360..1541247) Lactobacillus salivarius UCC118 3977800 YP_536371.1 CDS pgpB NC_007929.1 1541321 1541947 D COG0671 [I] Membrane-associated phospholipid phosphatase; phosphatidylglycerophosphatase B 1541321..1541947 Lactobacillus salivarius UCC118 3977801 YP_536372.1 CDS LSL_1485 NC_007929.1 1541992 1542816 R hypothetical protein complement(1541992..1542816) Lactobacillus salivarius UCC118 3977802 YP_536373.1 CDS aes NC_007929.1 1542866 1543687 R COG0657 [I] Esterase/lipase; endo-1,4-beta-xylanase complement(1542866..1543687) Lactobacillus salivarius UCC118 3977803 YP_536374.1 CDS LSL_1487 NC_007929.1 1543760 1544101 R hypothetical protein complement(1543760..1544101) Lactobacillus salivarius UCC118 3977804 YP_536375.1 CDS azlC NC_007929.1 1544101 1544880 R COG1296 [E] Predicted branched-chain amino acid permease (azaleucine resistance); branched chain amino acid ABC transporter complement(1544101..1544880) Lactobacillus salivarius UCC118 3977805 YP_536376.1 CDS LSL_1489 NC_007929.1 1544970 1545209 R hypothetical protein complement(1544970..1545209) Lactobacillus salivarius UCC118 3977806 YP_536377.1 CDS xthA NC_007929.1 1545303 1546130 D COG0708 [L] Exonuclease III; exodeoxyribonuclease III 1545303..1546130 Lactobacillus salivarius UCC118 3977807 YP_536378.1 CDS LSL_1491 NC_007929.1 1546178 1548952 R COG0344 [S] Predicted membrane protein; hypothetical protein complement(1546178..1548952) Lactobacillus salivarius UCC118 3977808 YP_536379.1 CDS LSL_1492 NC_007929.1 1549122 1549913 R hypothetical protein complement(1549122..1549913) Lactobacillus salivarius UCC118 3977809 YP_536380.1 CDS LSL_1493 NC_007929.1 1550107 1550925 R hypothetical protein complement(1550107..1550925) Lactobacillus salivarius UCC118 3977810 YP_536381.1 CDS LSL_1494 NC_007929.1 1551382 1551960 R hypothetical protein complement(1551382..1551960) Lactobacillus salivarius UCC118 3977811 YP_536382.1 CDS LSL_1495 NC_007929.1 1551974 1552555 R hypothetical protein complement(1551974..1552555) Lactobacillus salivarius UCC118 3977812 YP_536383.1 CDS LSL_1496 NC_007929.1 1552734 1553255 R hypothetical protein complement(1552734..1553255) Lactobacillus salivarius UCC118 3977813 YP_536384.1 CDS LSL_1497 NC_007929.1 1553245 1553718 R hypothetical protein complement(1553245..1553718) Lactobacillus salivarius UCC118 3977814 YP_536385.1 CDS gpmA NC_007929.1 1553862 1554548 R 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase complement(1553862..1554548) Lactobacillus salivarius UCC118 3977815 YP_536386.1 CDS LSL_1499 NC_007929.1 1554642 1555829 R COG1168 [E] Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; aminotransferase complement(1554642..1555829) Lactobacillus salivarius UCC118 3977816 YP_536387.1 CDS LSL_1500 NC_007929.1 1555830 1556885 R COG0628 [R] Predicted permease; hypothetical protein complement(1555830..1556885) Lactobacillus salivarius UCC118 3977258 YP_536388.1 CDS LSL_1501 NC_007929.1 1556996 1557928 D COG0697 [GER] Permeases of the drug/metabolite transporter (DMT) superfamily; drug/metabolite exporter family protein 1556996..1557928 Lactobacillus salivarius UCC118 3977259 YP_536389.1 CDS LSL_1502 NC_007929.1 1558129 1558770 R COG0546 [R] Predicted phosphatases; phosphatase complement(1558129..1558770) Lactobacillus salivarius UCC118 3977260 YP_536390.1 CDS galM NC_007929.1 1558853 1559905 R COG2017 [G] Galactose mutarotase and related enzymes; aldose 1-epimerase complement(1558853..1559905) Lactobacillus salivarius UCC118 3977261 YP_536391.1 CDS LSL_1504 NC_007929.1 1560038 1560601 R COG0431 [R] Predicted flavoprotein; FMN reductase complement(1560038..1560601) Lactobacillus salivarius UCC118 3977262 YP_536392.1 CDS LSL_1505 NC_007929.1 1560603 1561661 R COG2141 [C] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; luciferase-like monooxygenase complement(1560603..1561661) Lactobacillus salivarius UCC118 3977263 YP_536393.1 CDS LSL_1506 NC_007929.1 1561811 1562122 D COG0640 [K] Predicted transcriptional regulators; MarR family transcriptional regulator 1561811..1562122 Lactobacillus salivarius UCC118 3977264 YP_536394.1 CDS galE NC_007929.1 1562179 1563171 R COG1087 [M] UDP-glucose 4-epimerase; UDP-glucose 4-epimerase complement(1562179..1563171) Lactobacillus salivarius UCC118 3977265 YP_536395.1 CDS LSL_1508 NC_007929.1 1563310 1564035 D COG1522 [K] Transcriptional regulators; GntR family transcriptional regulator 1563310..1564035 Lactobacillus salivarius UCC118 3977266 YP_536396.1 CDS LSL_1509 NC_007929.1 1564195 1566555 D COG3957 [G] Phosphoketolase; phosphoketolase 1564195..1566555 Lactobacillus salivarius UCC118 3977267 YP_536397.1 CDS pncA NC_007929.1 1566617 1567165 R COG1335 [Q] Amidases related to nicotinamidase; pyrazinamidase / nicotinamidase complement(1566617..1567165) Lactobacillus salivarius UCC118 3977268 YP_536398.1 CDS gpmB NC_007929.1 1567308 1567898 D COG0406 [G] Fructose-2,6-bisphosphatase; phosphoglycerate mutase 1567308..1567898 Lactobacillus salivarius UCC118 3977269 YP_536399.1 CDS treB NC_007929.1 1567963 1569885 R COG1263 [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; PTS system, trehalose-specific IIBC component complement(1567963..1569885) Lactobacillus salivarius UCC118 3977270 YP_536400.1 CDS treR NC_007929.1 1570096 1570809 D COG1522 [K] Transcriptional regulators; trehalose operon transcriptional repressor 1570096..1570809 Lactobacillus salivarius UCC118 3977271 YP_536401.1 CDS treC NC_007929.1 1570828 1572489 D COG0366 [G] Glycosidases; trehalose-6-phosphate hydrolase 1570828..1572489 Lactobacillus salivarius UCC118 3977272 YP_536402.1 CDS LSL_1515 NC_007929.1 1572536 1573756 R COG0477 [GEPR] Permeases of the major facilitator superfamily; multidrug resistance efflux pump complement(1572536..1573756) Lactobacillus salivarius UCC118 3977273 YP_536403.1 CDS LSL_1516 NC_007929.1 1577448 1579361 R COG5263 [R] FOG: Glucan-binding domain (YG repeat); N-acetylmuramoyl-L-alanine amidase complement(1577448..1579361) Lactobacillus salivarius UCC118 3977275 YP_536404.1 CDS LSL_1517 NC_007929.1 1579413 1580327 R COG5263 [R] FOG: Glucan-binding domain (YG repeat); glucosyltransferase-S complement(1579413..1580327) Lactobacillus salivarius UCC118 3977276 YP_536405.1 CDS thrB NC_007929.1 1580404 1581282 R COG0083 [E] Homoserine kinase; homoserine kinase complement(1580404..1581282) Lactobacillus salivarius UCC118 3976971 YP_536406.1 CDS thrA NC_007929.1 1581287 1582573 R catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase complement(1581287..1582573) Lactobacillus salivarius UCC118 3976972 YP_536407.1 CDS apbE NC_007929.1 1582721 1583707 D COG1477 [H] Membrane-associated lipoprotein involved in thiamine biosynthesis; Iron-sulfur cluster assembly/repair protein 1582721..1583707 Lactobacillus salivarius UCC118 3976973 YP_536408.1 CDS thrC NC_007929.1 1583777 1585264 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1583777..1585264 Lactobacillus salivarius UCC118 3976974 YP_536409.1 CDS LSL_1522 NC_007929.1 1585410 1587848 D COG5263 [R] FOG: Glucan-binding domain (YG repeat); hypothetical protein 1585410..1587848 Lactobacillus salivarius UCC118 3976975 YP_536410.1 CDS LSL_1523 NC_007929.1 1587927 1589552 R hypothetical protein complement(1587927..1589552) Lactobacillus salivarius UCC118 3976976 YP_536411.1 CDS rfaG NC_007929.1 1589573 1590625 R COG0438 [M] Glycosyltransferase; UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase complement(1589573..1590625) Lactobacillus salivarius UCC118 3976977 YP_536412.1 CDS LSL_1525 NC_007929.1 1590785 1591963 D hypothetical protein 1590785..1591963 Lactobacillus salivarius UCC118 3976978 YP_536413.1 CDS LSL_1526 NC_007929.1 1591963 1592763 D polysachharide biosynthesis protein 1591963..1592763 Lactobacillus salivarius UCC118 3976979 YP_536414.1 CDS LSL_1527 NC_007929.1 1598791 1599849 D COG3594 [G] Fucose 4-O-acetylase and related acetyltransferases; O-acetyl transferase 1598791..1599849 Lactobacillus salivarius UCC118 3976982 YP_536415.1 CDS uRH NC_007929.1 1600019 1601002 D COG1957 [F] Inosine-uridine nucleoside N-ribohydrolase; inosine-uridine preferring nucleoside hydrolase 1600019..1601002 Lactobacillus salivarius UCC118 3976983 YP_536416.1 CDS LSL_1529 NC_007929.1 1601006 1601566 D hypothetical protein 1601006..1601566 Lactobacillus salivarius UCC118 3976984 YP_536417.1 CDS LSL_1530 NC_007929.1 1601647 1602939 R COG0431 [R] Predicted flavoprotein; oxidoreductase complement(1601647..1602939) Lactobacillus salivarius UCC118 3976985 YP_536418.1 CDS LSL_1531 NC_007929.1 1602957 1603562 R COG0431 [R] Predicted flavoprotein; oxidoreductase complement(1602957..1603562) Lactobacillus salivarius UCC118 3976986 YP_536419.1 CDS dacC NC_007929.1 1603730 1604884 R COG1686 [M] D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine serine-type carboxypeptidase complement(1603730..1604884) Lactobacillus salivarius UCC118 3976987 YP_536420.1 CDS napA NC_007929.1 1605255 1606430 R COG0475 [P] Kef-type K+ transport systems, membrane components; Na+/H+ antiporter complement(1605255..1606430) Lactobacillus salivarius UCC118 3976988 YP_536421.1 CDS LSL_1534 NC_007929.1 1606612 1609017 D catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue; x-prolyl-dipeptidyl aminopeptidase 1606612..1609017 Lactobacillus salivarius UCC118 3976683 YP_536422.1 CDS LSL_1535 NC_007929.1 1609082 1611736 R COG5263 [R] FOG: Glucan-binding domain (YG repeat); hypothetical protein complement(1609082..1611736) Lactobacillus salivarius UCC118 3976684 YP_536423.1 CDS LSL_1536 NC_007929.1 1611877 1613412 R hypothetical protein complement(1611877..1613412) Lactobacillus salivarius UCC118 3976685 YP_536424.1 CDS guaA NC_007929.1 1613487 1615043 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(1613487..1615043) Lactobacillus salivarius UCC118 3976686 YP_536425.1 CDS coaA NC_007929.1 1615140 1616060 R catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase complement(1615140..1616060) Lactobacillus salivarius UCC118 3976687 YP_536426.1 CDS LSL_1539 NC_007929.1 1616167 1616763 D COG2755 [E] Lysophospholipase L1 and related esterases; GDSL-like lipase/acylhydrolase 1616167..1616763 Lactobacillus salivarius UCC118 3976688 YP_536427.1 CDS LSL_1540 NC_007929.1 1616839 1617579 R COG1126 [E] ABC-type polar amino acid transport system, ATPase component; ABC transporter, ATP-binding protein complement(1616839..1617579) Lactobacillus salivarius UCC118 3976689 YP_536428.1 CDS LSL_1541 NC_007929.1 1617572 1619071 R COG0834 [ET] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; amino acid ABC transporter complement(1617572..1619071) Lactobacillus salivarius UCC118 3976690 YP_536429.1 CDS LSL_1542 NC_007929.1 1619301 1620791 R COG0531 [E] Amino acid transporters; amino acid permease complement(1619301..1620791) Lactobacillus salivarius UCC118 3976691 YP_536430.1 CDS LSL_1543 NC_007929.1 1621105 1621428 D COG1694 [R] Predicted pyrophosphatase; hypothetical protein 1621105..1621428 Lactobacillus salivarius UCC118 3976692 YP_536431.1 CDS LSL_1544 NC_007929.1 1621432 1622604 D COG0477 [GEPR] Permeases of the major facilitator superfamily; multidrug resistance efflux pump 1621432..1622604 Lactobacillus salivarius UCC118 3976693 YP_536432.1 CDS LSL_1545 NC_007929.1 1622674 1623321 R hypothetical protein complement(1622674..1623321) Lactobacillus salivarius UCC118 3976694 YP_536433.1 CDS LSL_1546 NC_007929.1 1623354 1626176 R COG5263 [R] FOG: Glucan-binding domain (YG repeat); hypothetical protein complement(1623354..1626176) Lactobacillus salivarius UCC118 3976695 YP_536434.1 CDS LSL_1547 NC_007929.1 1626392 1627822 R COG2244 [R] Membrane protein involved in the export of O-antigen and teichoic acid; flippase; oligosaccharide translocase complement(1626392..1627822) Lactobacillus salivarius UCC118 3976696 YP_536435.1 CDS glf NC_007929.1 1627825 1628940 R COG0562 [M] UDP-galactopyranose mutase; UDP-galactopyranose mutase complement(1627825..1628940) Lactobacillus salivarius UCC118 3976697 YP_536436.1 CDS LSL_1549 NC_007929.1 1629110 1629991 D hypothetical protein 1629110..1629991 Lactobacillus salivarius UCC118 3976698 YP_536437.1 CDS LSL_1550 NC_007929.1 1630020 1630685 R COG2148 [M] Sugar transferases involved in lipopolysaccharide synthesis; undecaprenyl-phosphate beta-glucosephosphotransferase complement(1630020..1630685) Lactobacillus salivarius UCC118 3976699 YP_536438.1 CDS LSL_1551 NC_007929.1 1630765 1631739 R COG0583 [K] Transcriptional regulator; LytR family transcriptional regulator complement(1630765..1631739) Lactobacillus salivarius UCC118 3976700 YP_536439.1 CDS LSL_1552 NC_007929.1 1631759 1632535 R COG3944 [M] Capsular polysaccharide biosynthesis protein; capsular polysaccharide biosynthesis; phosphotyrosine-protein phosphatase complement(1631759..1632535) Lactobacillus salivarius UCC118 3976701 YP_536440.1 CDS LSL_1553 NC_007929.1 1632887 1633612 R COG0455 [D] ATPases involved in chromosome partitioning; capsular polysaccharide biosynthesis; tyrosine-protein kinase complement(1632887..1633612) Lactobacillus salivarius UCC118 3976801 YP_536441.1 CDS LSL_1554 NC_007929.1 1633630 1634427 R COG3944 [M] Capsular polysaccharide biosynthesis protein; capsular polysaccharide biosynthesis; chain length regulator complement(1633630..1634427) Lactobacillus salivarius UCC118 3976802 YP_536442.1 CDS rfbX NC_007929.1 1635996 1637225 R COG2244 [R] Membrane protein involved in the export of O-antigen and teichoic acid; polysacharide biosyntheis protein complement(1635996..1637225) Lactobacillus salivarius UCC118 3976805 YP_536443.1 CDS rfaG NC_007929.1 1637261 1638484 R COG0438 [M] Glycosyltransferase; glycosyltransferase complement(1637261..1638484) Lactobacillus salivarius UCC118 3976806 YP_536444.1 CDS LSL_1557 NC_007929.1 1638504 1639679 R hypothetical protein complement(1638504..1639679) Lactobacillus salivarius UCC118 3976807 YP_536445.1 CDS LSL_1558 NC_007929.1 1639699 1640622 R capsular polysaccharide synthesis protein complement(1639699..1640622) Lactobacillus salivarius UCC118 3976808 YP_536446.1 CDS rfaG NC_007929.1 1640597 1641709 R COG0438 [M] Glycosyltransferase; glycosyltransferase complement(1640597..1641709) Lactobacillus salivarius UCC118 3976809 YP_536447.1 CDS rfaG NC_007929.1 1641712 1642755 R COG0463 [M] Glycosyltransferases involved in cell wall biogenesis; glycosyltransferase complement(1641712..1642755) Lactobacillus salivarius UCC118 3976810 YP_536448.1 CDS rfaG NC_007929.1 1642795 1643889 R COG0438 [M] Glycosyltransferase; glycosyltransferase complement(1642795..1643889) Lactobacillus salivarius UCC118 3976811 YP_536449.1 CDS LSL_1562 NC_007929.1 1644411 1644536 R hypothetical protein complement(1644411..1644536) Lactobacillus salivarius UCC118 3976812 YP_536450.1 CDS LSL_1563 NC_007929.1 1644609 1645898 R COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase complement(1644609..1645898) Lactobacillus salivarius UCC118 3976813 YP_536451.1 CDS LSL_1564 NC_007929.1 1646014 1647705 R COG0210 [L] Superfamily I DNA and RNA helicases; DNA helicase complement(1646014..1647705) Lactobacillus salivarius UCC118 3976814 YP_536452.1 CDS LSL_1565 NC_007929.1 1647690 1649729 R COG3593 [L] Predicted ATP-dependent endonuclease of the OLD family; hypothetical protein complement(1647690..1649729) Lactobacillus salivarius UCC118 3976815 YP_536453.1 CDS LSL_1566 NC_007929.1 1649923 1651320 R COG0344 [S] Predicted membrane protein; hypothetical protein complement(1649923..1651320) Lactobacillus salivarius UCC118 3976816 YP_536454.1 CDS LSL_1567 NC_007929.1 1651345 1652181 R hypothetical protein complement(1651345..1652181) Lactobacillus salivarius UCC118 3976817 YP_536455.1 CDS LSL_1568 NC_007929.1 1652242 1653345 R COG1472 [G] beta-glucosidase-related glycosidases; beta-N-acetylhexosaminidase complement(1652242..1653345) Lactobacillus salivarius UCC118 3976818 YP_536456.1 CDS rfbD NC_007929.1 1653564 1654400 R COG1091 [M] dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase complement(1653564..1654400) Lactobacillus salivarius UCC118 3976781 YP_536457.1 CDS rfbB NC_007929.1 1654456 1655487 R COG1088 [M] dTDP-D-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase complement(1654456..1655487) Lactobacillus salivarius UCC118 3976782 YP_536458.1 CDS rfbC NC_007929.1 1655499 1656080 R COG1898 [M] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes; dTDP-4-dehydrorhamnose 3,5-epimerase complement(1655499..1656080) Lactobacillus salivarius UCC118 3976783 YP_536459.1 CDS rfbA NC_007929.1 1656083 1656952 R COG1209 [M] dTDP-glucose pyrophosphorylase; glucose-1-phosphate thymidylyltransferase complement(1656083..1656952) Lactobacillus salivarius UCC118 3976784 YP_536460.1 CDS rfaG NC_007929.1 1657078 1658079 R COG0463 [M] Glycosyltransferases involved in cell wall biogenesis; glycosyltransferase complement(1657078..1658079) Lactobacillus salivarius UCC118 3976785 YP_536461.1 CDS rfaG NC_007929.1 1658161 1658973 R glycosyltransferase complement(1658161..1658973) Lactobacillus salivarius UCC118 3976786 YP_536462.1 CDS LSL_1575 NC_007929.1 1659206 1659847 D COG1266 [R] Predicted metal-dependent membrane protease; hypothetical protein 1659206..1659847 Lactobacillus salivarius UCC118 3976787 YP_536463.1 CDS LSL_1576 NC_007929.1 1659882 1660526 R COG0011 [S] Uncharacterized conserved protein; hypothetical protein complement(1659882..1660526) Lactobacillus salivarius UCC118 3976788 YP_536464.1 CDS LSL_1577 NC_007929.1 1660542 1661207 R COG0637 [R] Predicted phosphatase/phosphohexomutase; HAD superfamily hydrolase complement(1660542..1661207) Lactobacillus salivarius UCC118 3976789 YP_536465.1 CDS LSL_1578 NC_007929.1 1661297 1662652 R COG0477 [GEPR] Permeases of the major facilitator superfamily; multidrug resistance protein B complement(1661297..1662652) Lactobacillus salivarius UCC118 3976790 YP_536466.1 CDS LSL_1579 NC_007929.1 1662840 1663004 D hypothetical protein 1662840..1663004 Lactobacillus salivarius UCC118 3976791 YP_536467.1 CDS LSL_1580 NC_007929.1 1663081 1663539 D COG1418 [R] Predicted HD superfamily hydrolase; metal-dependent phosphohydrolase 1663081..1663539 Lactobacillus salivarius UCC118 3976792 YP_536468.1 CDS LSL_1581 NC_007929.1 1663807 1664196 D COG0640 [K] Predicted transcriptional regulators; MerR family transcriptional regulator 1663807..1664196 Lactobacillus salivarius UCC118 3976793 YP_536469.1 CDS LSL_1582 NC_007929.1 1664242 1665021 R NADPH-dependent FMN reductase complement(1664242..1665021) Lactobacillus salivarius UCC118 3976794 YP_536470.1 CDS thiD NC_007929.1 1665083 1665877 R COG0351 [H] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase complement(1665083..1665877) Lactobacillus salivarius UCC118 3976795 YP_536471.1 CDS LSL_1584 NC_007929.1 1665947 1666489 R hypothetical protein complement(1665947..1666489) Lactobacillus salivarius UCC118 3976796 YP_536472.1 CDS LSL_1585 NC_007929.1 1666729 1667529 R COG1108 [P] ABC-type Mn2+/Zn2+ transport systems, permease components; ABC transporter permease complement(1666729..1667529) Lactobacillus salivarius UCC118 3976797 YP_536473.1 CDS LSL_1586 NC_007929.1 1667522 1668190 R COG1121 [P] ABC-type Mn/Zn transport systems, ATPase component; ABC transporter, ATP-binding protein complement(1667522..1668190) Lactobacillus salivarius UCC118 3976798 YP_536474.1 CDS LSL_1587 NC_007929.1 1668193 1669059 R COG0803 [P] ABC-type metal ion transport system, periplasmic component/surface adhesin; ABC transporter substrate-binding protein complement(1668193..1669059) Lactobacillus salivarius UCC118 3976799 YP_536475.1 CDS LSL_1588 NC_007929.1 1669293 1670174 R hypothetical protein complement(1669293..1670174) Lactobacillus salivarius UCC118 3976800 YP_536476.1 CDS LSL_1591 NC_007929.1 1671456 1672142 D COG0596 [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); hypothetical protein 1671456..1672142 Lactobacillus salivarius UCC118 3976474 YP_536477.1 CDS LSL_1592 NC_007929.1 1672241 1674010 R hypothetical protein complement(1672241..1674010) Lactobacillus salivarius UCC118 3976475 YP_536478.1 CDS LSL_1593 NC_007929.1 1674040 1674786 R COG4858 [S] Uncharacterized membrane-bound protein conserved in bacteria; hypothetical protein complement(1674040..1674786) Lactobacillus salivarius UCC118 3976476 YP_536479.1 CDS LSL_1594 NC_007929.1 1674816 1675916 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(1674816..1675916) Lactobacillus salivarius UCC118 3976477 YP_536480.1 CDS LSL_1595 NC_007929.1 1675934 1676128 R COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein complement(1675934..1676128) Lactobacillus salivarius UCC118 3976478 YP_536481.1 CDS parB NC_007929.1 1676145 1677020 R COG0640 [K] Predicted transcriptional regulators; chromosome partitioning protein, DNA-binding protein complement(1676145..1677020) Lactobacillus salivarius UCC118 3976479 YP_536482.1 CDS LSL_1597 NC_007929.1 1677010 1677777 R COG0455 [D] ATPases involved in chromosome partitioning; chromosome partitioning protein parA complement(1677010..1677777) Lactobacillus salivarius UCC118 3976480 YP_536483.1 CDS parB NC_007929.1 1677795 1678637 R COG0640 [K] Predicted transcriptional regulators; chromosome partitioning protein complement(1677795..1678637) Lactobacillus salivarius UCC118 3976481 YP_536484.1 CDS gidB NC_007929.1 1678668 1679393 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(1678668..1679393) Lactobacillus salivarius UCC118 3976482 YP_536485.1 CDS LSL_1600 NC_007929.1 1679556 1680464 R COG0039 [C] Malate/lactate dehydrogenases; L-2-hydroxyisocaproate dehydrogenase complement(1679556..1680464) Lactobacillus salivarius UCC118 3976483 YP_536486.1 CDS LSL_1601 NC_007929.1 1680578 1682254 D COG0584 [C] Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase 1680578..1682254 Lactobacillus salivarius UCC118 3976484 YP_536487.1 CDS LSL_1602 NC_007929.1 1682320 1684965 R COG0474 [P] Cation transport ATPase; calcium-transporting ATPase complement(1682320..1684965) Lactobacillus salivarius UCC118 3976485 YP_536488.1 CDS LSL_1603 NC_007929.1 1685225 1685761 D COG1611 [R] Predicted Rossmann fold nucleotide-binding protein; hypothetical protein 1685225..1685761 Lactobacillus salivarius UCC118 3976486 YP_536489.1 CDS thiJ NC_007929.1 1685817 1686386 R COG0693 [R] intracellular protease/amidase; 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme complement(1685817..1686386) Lactobacillus salivarius UCC118 3976487 YP_536490.1 CDS LSL_1605 NC_007929.1 1686388 1687017 R hypothetical protein complement(1686388..1687017) Lactobacillus salivarius UCC118 3976488 YP_536491.1 CDS LSL_1606 NC_007929.1 1687151 1687819 R COG3764 [M] Sortase (surface protein transpeptidase); sortase complement(1687151..1687819) Lactobacillus salivarius UCC118 3976489 YP_536492.1 CDS LSL_1607 NC_007929.1 1687868 1691614 R COG1074 [L] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); ATP-dependent nuclease subunit A complement(1687868..1691614) Lactobacillus salivarius UCC118 3976490 YP_536493.1 CDS LSL_1608 NC_007929.1 1691619 1695200 R COG3857 [L] ATP-dependent nuclease, subunit B; ATP-dependent nuclease subunit B complement(1691619..1695200) Lactobacillus salivarius UCC118 3976761 YP_536494.1 CDS LSL_1609 NC_007929.1 1695311 1695679 D hypothetical protein 1695311..1695679 Lactobacillus salivarius UCC118 3976762 YP_536495.1 CDS prsA NC_007929.1 1695752 1696720 R COG0462 [FE] Phosphoribosylpyrophosphate synthetase; ribose-phosphate pyrophosphokinase complement(1695752..1696720) Lactobacillus salivarius UCC118 3976763 YP_536496.1 CDS proA NC_007929.1 1696814 1698061 R COG0014 [E] Gamma-glutamyl phosphate reductase; gamma-glutamyl phosphate reductase complement(1696814..1698061) Lactobacillus salivarius UCC118 3976764 YP_536497.1 CDS proB NC_007929.1 1698073 1698876 R COG0263 [E] Glutamate 5-kinase; glutamate 5-kinase complement(1698073..1698876) Lactobacillus salivarius UCC118 3976765 YP_536498.1 CDS manA NC_007929.1 1699010 1699975 R COG1482 [G] Phosphomannose isomerase; mannose-6-phosphate isomerase complement(1699010..1699975) Lactobacillus salivarius UCC118 3976766 YP_536499.1 CDS LSL_1614 NC_007929.1 1700230 1700547 R COG0011 [S] Uncharacterized conserved protein; hypothetical protein complement(1700230..1700547) Lactobacillus salivarius UCC118 3976767 YP_536500.1 CDS LSL_1615 NC_007929.1 1700550 1701341 R hypothetical protein complement(1700550..1701341) Lactobacillus salivarius UCC118 3976768 YP_536501.1 CDS LSL_1616 NC_007929.1 1701328 1702206 R COG1131 [V] ABC-type multidrug transport system, ATPase component; ABC transporter, ATP-binding protein complement(1701328..1702206) Lactobacillus salivarius UCC118 3976769 YP_536502.1 CDS LSL_1617 NC_007929.1 1702209 1702577 R COG0640 [K] Predicted transcriptional regulators; GntR family transcriptional regulator complement(1702209..1702577) Lactobacillus salivarius UCC118 3976770 YP_536503.1 CDS mtlD NC_007929.1 1702714 1703862 R COG0246 [G] Mannitol-1-phosphate/altronate dehydrogenases; mannitol-1-phosphate 5-dehydrogenase complement(1702714..1703862) Lactobacillus salivarius UCC118 3976771 YP_536504.1 CDS LSL_1619 NC_007929.1 1703862 1704305 R COG4668 [G] Mannitol/fructose-specific phosphotransferase system, IIA domain; PTS system, mannitol-specific IIA component complement(1703862..1704305) Lactobacillus salivarius UCC118 3976772 YP_536505.1 CDS mtlA NC_007929.1 1704320 1706110 R COG2213 [G] Phosphotransferase system, mannitol-specific IIBC component; PTS system, mannitol-specific IIBC component complement(1704320..1706110) Lactobacillus salivarius UCC118 3976773 YP_536506.1 CDS terC NC_007929.1 1706374 1707099 R COG0861 [P] Membrane protein TerC, possibly involved in tellurium resistance; tellurium resistance protein complement(1706374..1707099) Lactobacillus salivarius UCC118 3976774 YP_536507.1 CDS LSL_1622 NC_007929.1 1707202 1707612 R COG0583 [K] Transcriptional regulator; Cro/CI family transcriptional regulator complement(1707202..1707612) Lactobacillus salivarius UCC118 3976775 YP_536508.1 CDS LSL_1623 NC_007929.1 1707741 1708559 R COG0834 [ET] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; amino acid ABC transporter substrate-binding protein complement(1707741..1708559) Lactobacillus salivarius UCC118 3976776 YP_536509.1 CDS LSL_1624 NC_007929.1 1708665 1709954 R COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase complement(1708665..1709954) Lactobacillus salivarius UCC118 3976777 YP_536510.1 CDS LSL_1625 NC_007929.1 1710089 1710835 R COG1126 [E] ABC-type polar amino acid transport system, ATPase component; amino acid ABC transporter ATP-binding protein complement(1710089..1710835) Lactobacillus salivarius UCC118 3976778 YP_536511.1 CDS LSL_1626 NC_007929.1 1710858 1711553 R COG0765 [E] ABC-type amino acid transport system, permease component; amino acid ABC transporter permease complement(1710858..1711553) Lactobacillus salivarius UCC118 3976779 YP_536512.1 CDS glmS NC_007929.1 1711940 1713757 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(1711940..1713757) Lactobacillus salivarius UCC118 3976780 YP_536513.1 CDS LSL_1628 NC_007929.1 1713902 1715986 R COG3711 [K] Transcriptional antiterminator; transcription regulator complement(1713902..1715986) Lactobacillus salivarius UCC118 3976404 YP_536514.1 CDS nhaP NC_007929.1 1716072 1717649 R COG0025 [P] NhaP-type Na+/H+ and K+/H+ antiporters; Na+/H+ antiporter complement(1716072..1717649) Lactobacillus salivarius UCC118 3976405 YP_536515.1 CDS glpF NC_007929.1 1717950 1718657 R COG0580 [G] Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family); glycerol uptake facilitator protein complement(1717950..1718657) Lactobacillus salivarius UCC118 3976406 YP_536516.1 CDS LSL_1631 NC_007929.1 1718669 1719037 R COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein complement(1718669..1719037) Lactobacillus salivarius UCC118 3976407 YP_536517.1 CDS dAK NC_007929.1 1719037 1719621 R COG2376 [G] Dihydroxyacetone kinase; dihydroxyacetone kinase complement(1719037..1719621) Lactobacillus salivarius UCC118 3976408 YP_536518.1 CDS dAK NC_007929.1 1719650 1720645 R with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK complement(1719650..1720645) Lactobacillus salivarius UCC118 3976409 YP_536519.1 CDS dAK NC_007929.1 1720791 1721747 D similar to DhaK; in Lactococcus lactis this protein froms a stable complex with DhaS and activates transcription of the dha operon in the presence of dihydroxyacetone; DhaKLM operon coactivator DhaQ 1720791..1721747 Lactobacillus salivarius UCC118 3976410 YP_536520.1 CDS LSL_1635 NC_007929.1 1721748 1722272 R COG0583 [K] Transcriptional regulator; hypothetical protein complement(1721748..1722272) Lactobacillus salivarius UCC118 3976411 YP_536521.1 CDS brnQ NC_007929.1 1722418 1723800 R COG1114 [E] Branched-chain amino acid permeases; branched chain amino acid ABC transporter carrier protein complement(1722418..1723800) Lactobacillus salivarius UCC118 3976412 YP_536522.1 CDS LSL_1637 NC_007929.1 1724339 1724605 D hypothetical protein 1724339..1724605 Lactobacillus salivarius UCC118 3976413 YP_536523.1 CDS LSL_1638 NC_007929.1 1724660 1725490 R DNA-entry nuclease complement(1724660..1725490) Lactobacillus salivarius UCC118 3976414 YP_536524.1 CDS LSL_1639 NC_007929.1 1726515 1728446 R COG0474 [P] Cation transport ATPase; zinc-transporting ATPase complement(1726515..1728446) Lactobacillus salivarius UCC118 3976416 YP_536525.1 CDS LSL_1640 NC_007929.1 1728560 1728910 D COG0640 [K] Predicted transcriptional regulators; ArsR family transcriptional regulator 1728560..1728910 Lactobacillus salivarius UCC118 3976417 YP_536526.1 CDS LSL_1641 NC_007929.1 1728958 1730652 R in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; myosin-cross-reactive antigen complement(1728958..1730652) Lactobacillus salivarius UCC118 3976418 YP_536527.1 CDS LSL_1642 NC_007929.1 1730813 1731550 R COG1428 [F] Deoxynucleoside kinases; deoxyguanosine kinase complement(1730813..1731550) Lactobacillus salivarius UCC118 3976419 YP_536528.1 CDS LSL_1643 NC_007929.1 1731785 1732252 D COG3613 [F] Nucleoside 2-deoxyribosyltransferase; nucleoside deoxyribosyltransferase 1731785..1732252 Lactobacillus salivarius UCC118 3976420 YP_536529.1 CDS azlC NC_007929.1 1732323 1733030 D COG1296 [E] Predicted branched-chain amino acid permease (azaleucine resistance); branched chain amino acid ABC transporter 1732323..1733030 Lactobacillus salivarius UCC118 3976421 YP_536530.1 CDS LSL_1645 NC_007929.1 1733017 1733343 D COG0344 [S] Predicted membrane protein; branched chain amino acid ABC transporter 1733017..1733343 Lactobacillus salivarius UCC118 3976989 YP_536531.1 CDS LSL_1646 NC_007929.1 1733396 1733878 R COG1522 [K] Transcriptional regulators; MarR family transcriptional regulator complement(1733396..1733878) Lactobacillus salivarius UCC118 3976990 YP_536532.1 CDS LSL_1647 NC_007929.1 1733912 1734691 R COG1491 [J] Predicted RNA-binding protein; hypothetical protein complement(1733912..1734691) Lactobacillus salivarius UCC118 3976991 YP_536533.1 CDS xerC NC_007929.1 1734886 1736031 R COG0582 [L] Integrase; phage integrase complement(1734886..1736031) Lactobacillus salivarius UCC118 3976992 YP_536534.1 CDS LSL_1649 NC_007929.1 1736463 1737266 R COG0583 [K] Transcriptional regulator; Cro/CI family transcriptional regulator complement(1736463..1737266) Lactobacillus salivarius UCC118 3976993 YP_536535.1 CDS LSL_1650 NC_007929.1 1737629 1738444 D antirepressor 1737629..1738444 Lactobacillus salivarius UCC118 3976994 YP_536536.1 CDS LSL_1651 NC_007929.1 1738547 1738852 D hypothetical protein 1738547..1738852 Lactobacillus salivarius UCC118 3976995 YP_536537.1 CDS LSL_1652 NC_007929.1 1738867 1739079 D hypothetical protein 1738867..1739079 Lactobacillus salivarius UCC118 3976996 YP_536538.1 CDS LSL_1653 NC_007929.1 1739076 1739408 D hypothetical protein 1739076..1739408 Lactobacillus salivarius UCC118 3976997 YP_536539.1 CDS LSL_1654 NC_007929.1 1739411 1739530 D hypothetical protein 1739411..1739530 Lactobacillus salivarius UCC118 3976998 YP_536540.1 CDS LSL_1655 NC_007929.1 1739662 1740012 D hypothetical protein 1739662..1740012 Lactobacillus salivarius UCC118 3976999 YP_536541.1 CDS LSL_1656 NC_007929.1 1740027 1740452 D hypothetical protein 1740027..1740452 Lactobacillus salivarius UCC118 3977000 YP_536542.1 CDS LSL_1657 NC_007929.1 1740458 1741228 D hypothetical protein 1740458..1741228 Lactobacillus salivarius UCC118 3977001 YP_536543.1 CDS LSL_1658 NC_007929.1 1741243 1742637 D COG0433 [R] Predicted ATPase; DNA primase 1741243..1742637 Lactobacillus salivarius UCC118 3977002 YP_536544.1 CDS LSL_1659 NC_007929.1 1742930 1743238 D hypothetical protein 1742930..1743238 Lactobacillus salivarius UCC118 3977003 YP_536545.1 CDS LSL_1660 NC_007929.1 1743297 1743737 D hypothetical protein 1743297..1743737 Lactobacillus salivarius UCC118 3977004 YP_536546.1 CDS LSL_1661 NC_007929.1 1743744 1743959 D hypothetical protein 1743744..1743959 Lactobacillus salivarius UCC118 3977005 YP_536547.1 CDS LSL_1662 NC_007929.1 1743973 1744083 D hypothetical protein 1743973..1744083 Lactobacillus salivarius UCC118 3977006 YP_536548.1 CDS LSL_1663 NC_007929.1 1744055 1744237 D hypothetical protein 1744055..1744237 Lactobacillus salivarius UCC118 3976628 YP_536549.1 CDS LSL_1664 NC_007929.1 1744198 1744314 D hypothetical protein 1744198..1744314 Lactobacillus salivarius UCC118 3976629 YP_536550.1 CDS LSL_1665 NC_007929.1 1744445 1744636 D hypothetical protein 1744445..1744636 Lactobacillus salivarius UCC118 3976630 YP_536551.1 CDS LSL_1666 NC_007929.1 1744651 1744902 D hypothetical protein 1744651..1744902 Lactobacillus salivarius UCC118 3976631 YP_536552.1 CDS LSL_1667 NC_007929.1 1746394 1747008 R COG0583 [K] Transcriptional regulator; TetR family transcriptional regulator complement(1746394..1747008) Lactobacillus salivarius UCC118 3976632 YP_536553.1 CDS LSL_1668 NC_007929.1 1747364 1747921 D COG0344 [S] Predicted membrane protein; hypothetical protein 1747364..1747921 Lactobacillus salivarius UCC118 3976633 YP_536554.1 CDS pepO NC_007929.1 1748052 1749953 D COG3590 [O] Predicted metalloendopeptidase; oligoendopeptidase O 1748052..1749953 Lactobacillus salivarius UCC118 3976634 YP_536555.1 CDS LSL_1670 NC_007929.1 1750082 1750927 D COG0115 [EH] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; D-alanine aminotransferase 1750082..1750927 Lactobacillus salivarius UCC118 3976635 YP_536556.1 CDS LSL_1671 NC_007929.1 1750964 1751557 R COG0392 [S] Predicted integral membrane protein; hypothetical protein complement(1750964..1751557) Lactobacillus salivarius UCC118 3976636 YP_536557.1 CDS LSL_1672 NC_007929.1 1752569 1753069 D COG0344 [S] Predicted membrane protein; hypothetical protein 1752569..1753069 Lactobacillus salivarius UCC118 3976638 YP_536558.1 CDS wecD NC_007929.1 1753481 1753999 R COG0454 [KR] Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase complement(1753481..1753999) Lactobacillus salivarius UCC118 3976639 YP_536559.1 CDS LSL_1674 NC_007929.1 1754774 1755205 R COG2957 [E] Peptidylarginine deiminase and related enzymes; agmatine deiminase complement(1754774..1755205) Lactobacillus salivarius UCC118 3976641 YP_536560.1 CDS LSL_1675 NC_007929.1 1755378 1757948 R COG0577 [V] ABC-type antimicrobial peptide transport system, permease component; ABC transporter permease complement(1755378..1757948) Lactobacillus salivarius UCC118 3976642 YP_536561.1 CDS LSL_1676 NC_007929.1 1757959 1758660 R COG1136 [V] ABC-type antimicrobial peptide transport system, ATPase component; amino acid ABC transporter ATP-binding protein complement(1757959..1758660) Lactobacillus salivarius UCC118 3976643 YP_536562.1 CDS LSL_1677 NC_007929.1 1758783 1759340 D COG0583 [K] Transcriptional regulator; TetR family transcriptional regulator 1758783..1759340 Lactobacillus salivarius UCC118 3976644 YP_536563.1 CDS LSL_1678 NC_007929.1 1759530 1759820 D hypothetical protein 1759530..1759820 Lactobacillus salivarius UCC118 3976645 YP_536564.1 CDS LSL_1679 NC_007929.1 1761082 1762980 D COG5651 [N] PPE-repeat proteins; PPE repeat-containing protein 1761082..1762980 Lactobacillus salivarius UCC118 3977115 YP_536565.1 CDS LSL_1680 NC_007929.1 1763213 1763692 R glyoxalase complement(1763213..1763692) Lactobacillus salivarius UCC118 3977117 YP_536566.1 CDS LSL_1681 NC_007929.1 1763721 1764560 R COG0656 [R] Aldo/keto reductases, related to diketogulonate reductase; 2,5-diketo-D-gluconic acid reductase complement(1763721..1764560) Lactobacillus salivarius UCC118 3977118 YP_536567.1 CDS LSL_1682 NC_007929.1 1764691 1765047 D COG0640 [K] Predicted transcriptional regulators; MarR family transcriptional regulator 1764691..1765047 Lactobacillus salivarius UCC118 3977119 YP_536568.1 CDS LSL_1683 NC_007929.1 1765136 1765900 R COG0390 [R] ABC-type uncharacterized transport system, permease component; hypothetical protein complement(1765136..1765900) Lactobacillus salivarius UCC118 3977120 YP_536569.1 CDS LSL_1684 NC_007929.1 1765881 1766534 R COG1101 [R] ABC-type uncharacterized transport system, ATPase component; ABC transporter, ATP-binding protein complement(1765881..1766534) Lactobacillus salivarius UCC118 3977121 YP_536570.1 CDS LSL_1685 NC_007929.1 1766684 1767910 R COG0477 [GEPR] Permeases of the major facilitator superfamily; major facilitator superfamily permease complement(1766684..1767910) Lactobacillus salivarius UCC118 3977122 YP_536571.1 CDS LSL_1686 NC_007929.1 1768192 1768686 D COG0450 [O] Peroxiredoxin; thioredoxin peroxidase 1768192..1768686 Lactobacillus salivarius UCC118 3977123 YP_536572.1 CDS LSL_1687 NC_007929.1 1768746 1769270 R COG0011 [S] Uncharacterized conserved protein; hypothetical protein complement(1768746..1769270) Lactobacillus salivarius UCC118 3977124 YP_536573.1 CDS LSL_1688 NC_007929.1 1769289 1769882 R COG0583 [K] Transcriptional regulator; TetR family transcriptional regulator complement(1769289..1769882) Lactobacillus salivarius UCC118 3977125 YP_536574.1 CDS LSL_1689 NC_007929.1 1770073 1771020 R COG2837 [P] Predicted iron-dependent peroxidase; Dyp-type peroxidase family protein complement(1770073..1771020) Lactobacillus salivarius UCC118 3977126 YP_536575.1 CDS LSL_1690 NC_007929.1 1771106 1771564 R hypothetical protein complement(1771106..1771564) Lactobacillus salivarius UCC118 3977127 YP_536576.1 CDS LSL_1691 NC_007929.1 1771561 1771995 R COG3279 [KT] Response regulator of the LytR/AlgR family; hypothetical protein complement(1771561..1771995) Lactobacillus salivarius UCC118 3977128 YP_536577.1 CDS mmuM NC_007929.1 1772148 1773071 R converts homocysteine and S-adenosyl-methionine to methionine and S-adenosyl-homocysteine or S-methyl-methionine and homocysteine to two methionines; homocysteine methyltransferase complement(1772148..1773071) Lactobacillus salivarius UCC118 3977129 YP_536578.1 CDS LSL_1693 NC_007929.1 1773185 1774552 D COG0531 [E] Amino acid transporters; amino acid permease 1773185..1774552 Lactobacillus salivarius UCC118 3977130 YP_536579.1 CDS LSL_1694 NC_007929.1 1774586 1775026 D COG0344 [S] Predicted membrane protein; phosphate-starvation-inducible protein PsiE 1774586..1775026 Lactobacillus salivarius UCC118 3977131 YP_536580.1 CDS LSL_1695 NC_007929.1 1775110 1776057 R COG4608 [E] ABC-type oligopeptide transport system, ATPase component; oligopeptide transport ATP-binding protein oppF complement(1775110..1776057) Lactobacillus salivarius UCC118 3977132 YP_536581.1 CDS oppD NC_007929.1 1776076 1777119 R COG0444 [EP] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; oligopeptide transport ATP-binding protein complement(1776076..1777119) Lactobacillus salivarius UCC118 3976440 YP_536582.1 CDS oppC NC_007929.1 1777130 1778158 R COG0601 [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; oligopeptide transport system permease complement(1777130..1778158) Lactobacillus salivarius UCC118 3976441 YP_536583.1 CDS oppB NC_007929.1 1778158 1779093 R COG0601 [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; oligopeptide transport system permease complement(1778158..1779093) Lactobacillus salivarius UCC118 3976442 YP_536584.1 CDS LSL_1699 NC_007929.1 1779229 1780842 R COG4166 [E] ABC-type oligopeptide transport system, periplasmic component; oligopeptide-binding protein oppA complement(1779229..1780842) Lactobacillus salivarius UCC118 3976443 YP_536585.1 CDS LSL_1700 NC_007929.1 1781344 1782744 R COG1113 [E] Gamma-aminobutyrate permease and related permeases; amino acid permease complement(1781344..1782744) Lactobacillus salivarius UCC118 3976444 YP_536586.1 CDS efp NC_007929.1 1783118 1783675 R COG0231 [J] Translation elongation factor P (EF-P); translation initiation factor 5A (eIF-5A); protein translation elongation factor P complement(1783118..1783675) Lactobacillus salivarius UCC118 3976445 YP_536587.1 CDS LSL_1702 NC_007929.1 1783827 1784627 R COG0561 [R] Predicted hydrolases of the HAD superfamily; HAD superfamily hydrolase complement(1783827..1784627) Lactobacillus salivarius UCC118 3976446 YP_536588.1 CDS gpmB NC_007929.1 1784646 1785302 R COG0406 [G] Fructose-2,6-bisphosphatase; phosphoglycerate mutase complement(1784646..1785302) Lactobacillus salivarius UCC118 3976447 YP_536589.1 CDS LSL_1704 NC_007929.1 1785421 1787331 R COG0474 [P] Cation transport ATPase; cation transport ATPases complement(1785421..1787331) Lactobacillus salivarius UCC118 3976448 YP_536590.1 CDS LSL_1705 NC_007929.1 1787331 1787594 R COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein complement(1787331..1787594) Lactobacillus salivarius UCC118 3976449 YP_536591.1 CDS LSL_1706 NC_007929.1 1787611 1787985 R COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein complement(1787611..1787985) Lactobacillus salivarius UCC118 3976450 YP_536592.1 CDS LSL_1707 NC_007929.1 1788107 1789249 R COG1929 [G] Glycerate kinase; glycerate kinase complement(1788107..1789249) Lactobacillus salivarius UCC118 3976451 YP_536593.1 CDS LSL_1708 NC_007929.1 1789491 1789850 D COG0583 [K] Transcriptional regulator; ArsR family transcriptional regulator 1789491..1789850 Lactobacillus salivarius UCC118 3976452 YP_536594.1 CDS LSL_1709 NC_007929.1 1789850 1790539 D COG0693 [R] intracellular protease/amidase; ThiJ/PfpI family protein 1789850..1790539 Lactobacillus salivarius UCC118 3976453 YP_536595.1 CDS LSL_1710 NC_007929.1 1790654 1792468 D COG0584 [C] Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase 1790654..1792468 Lactobacillus salivarius UCC118 3976454 YP_536596.1 CDS LSL_1711 NC_007929.1 1792554 1793546 R COG1522 [K] Transcriptional regulators; LacI family transcription regulator complement(1792554..1793546) Lactobacillus salivarius UCC118 3976455 YP_536597.1 CDS LSL_1712 NC_007929.1 1793548 1795206 R COG0366 [G] Glycosidases; oligo-1,6-glucosidase complement(1793548..1795206) Lactobacillus salivarius UCC118 3976456 YP_536598.1 CDS LSL_1713 NC_007929.1 1795199 1795624 R COG2893 [G] Phosphotransferase system, mannose/fructose-specific component IIA; PTS system, N-acetylgalactosamine-specific IIA component complement(1795199..1795624) Lactobacillus salivarius UCC118 3976457 YP_536599.1 CDS LSL_1714 NC_007929.1 1795651 1796460 R COG3716 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; PTS system, mannose-specific IID component complement(1795651..1796460) Lactobacillus salivarius UCC118 3976458 YP_536600.1 CDS LSL_1715 NC_007929.1 1796453 1797253 R COG3715 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; PTS system, mannose-specific IIC component complement(1796453..1797253) Lactobacillus salivarius UCC118 3977354 YP_536601.1 CDS LSL_1716 NC_007929.1 1797258 1797743 R COG3444 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB; PTS system, mannose-specific IIAB component complement(1797258..1797743) Lactobacillus salivarius UCC118 3977355 YP_536602.1 CDS metA NC_007929.1 1798177 1798983 D COG1897 [E] Homoserine trans-succinylase; homoserine O-succinyltransferase 1798177..1798983 Lactobacillus salivarius UCC118 3977356 YP_536603.1 CDS cysK NC_007929.1 1798996 1799919 D COG0031 [E] Cysteine synthase; cysteine synthase 1798996..1799919 Lactobacillus salivarius UCC118 3977357 YP_536604.1 CDS LSL_1719 NC_007929.1 1801589 1802332 R COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein complement(1801589..1802332) Lactobacillus salivarius UCC118 3977360 YP_536605.1 CDS LSL_1720 NC_007929.1 1802359 1803093 R hypothetical protein complement(1802359..1803093) Lactobacillus salivarius UCC118 3977361 YP_536606.1 CDS LSL_1721 NC_007929.1 1803210 1803719 D COG1607 [I] acyl-CoA hydrolase; acyl-CoA hydrolase 1803210..1803719 Lactobacillus salivarius UCC118 3977362 YP_536607.1 CDS trxB NC_007929.1 1803877 1804812 D COG0492 [O] Thioredoxin reductase; thioredoxin reductase 1803877..1804812 Lactobacillus salivarius UCC118 3977363 YP_536608.1 CDS LSL_1723 NC_007929.1 1804845 1804967 R hypothetical protein complement(1804845..1804967) Lactobacillus salivarius UCC118 3977364 YP_536609.1 CDS purA NC_007929.1 1805385 1806677 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(1805385..1806677) Lactobacillus salivarius UCC118 3977365 YP_536610.1 CDS LSL_1725 NC_007929.1 1806914 1807486 R COG0716 [C] Flavodoxins; hypothetical protein complement(1806914..1807486) Lactobacillus salivarius UCC118 3977366 YP_536611.1 CDS dnaB NC_007929.1 1807560 1808951 R COG0305 [L] Replicative DNA helicase; replicative DNA helicase complement(1807560..1808951) Lactobacillus salivarius UCC118 3977367 YP_536612.1 CDS rplI NC_007929.1 1809124 1809573 R COG0359 [J] Ribosomal protein L9; 50S ribosomal protein L9P complement(1809124..1809573) Lactobacillus salivarius UCC118 3977368 YP_536613.1 CDS LSL_1728 NC_007929.1 1809587 1811620 R COG3887 [T] Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain; phosphoesterase, DHH family protein complement(1809587..1811620) Lactobacillus salivarius UCC118 3977369 YP_536614.1 CDS LSL_1729 NC_007929.1 1811803 1812570 D hypothetical protein 1811803..1812570 Lactobacillus salivarius UCC118 3977370 YP_536615.1 CDS LSL_1730 NC_007929.1 1819718 1820074 D hypothetical protein 1819718..1820074 Lactobacillus salivarius UCC118 3977522 YP_536616.1 CDS LSL_1731 NC_007929.1 1820217 1821017 D COG0726 [G] Predicted xylanase/chitin deacetylase; polysaccharide deacetylase 1820217..1821017 Lactobacillus salivarius UCC118 3977523 YP_536617.1 CDS LSL_1732 NC_007929.1 1821043 1821552 D hypothetical protein 1821043..1821552 Lactobacillus salivarius UCC118 3977524 YP_536618.1 CDS LSL_1733 NC_007929.1 1821643 1822521 R COG0583 [K] Transcriptional regulator; LysR family transcriptional regulator complement(1821643..1822521) Lactobacillus salivarius UCC118 3977525 YP_536619.1 CDS LSL_1734 NC_007929.1 1822630 1823652 D COG0344 [S] Predicted membrane protein; hypothetical protein 1822630..1823652 Lactobacillus salivarius UCC118 3977526 YP_536620.1 CDS nupC NC_007929.1 1823730 1824977 R COG1972 [F] Nucleoside permease; nucleoside transport protein complement(1823730..1824977) Lactobacillus salivarius UCC118 3977527 YP_536621.1 CDS yidC NC_007929.1 1825230 1826069 R COG0706 [U] Preprotein translocase subunit YidC; 60 kDa inner membrane protein complement(1825230..1826069) Lactobacillus salivarius UCC118 3977528 YP_536622.1 CDS rnpA NC_007929.1 1826091 1826432 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(1826091..1826432) Lactobacillus salivarius UCC118 3977529 YP_536623.1 CDS rpmH NC_007929.1 1826490 1826624 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(1826490..1826624) Lactobacillus salivarius UCC118 3977530 YP_536624.1 CDS LSL_1739 NC_007930.1 1 765 D COG5527 [L] Protein involved in initiation of plasmid replication; replication protein 1..765 Lactobacillus salivarius UCC118 3978414 YP_536625.1 CDS LSL_1740 NC_007930.1 1051 2043 D putative replication protein 1051..2043 Lactobacillus salivarius UCC118 3978415 YP_536626.1 CDS LSL_1741 NC_007930.1 5306 6118 D COG0455 [D] ATPases involved in chromosome partitioning; chromosome partitioning ATPase 5306..6118 Lactobacillus salivarius UCC118 3978491 YP_536627.1 CDS LSL_1742 NC_007930.1 6118 6453 D hypothetical protein 6118..6453 Lactobacillus salivarius UCC118 3978492 YP_536628.1 CDS LSL_1743 NC_007930.1 6913 8130 D COG0675 [L] Transposase and inactivated derivatives; IS607 family transposase 6913..8130 Lactobacillus salivarius UCC118 3978493 YP_536629.1 CDS LSL_1744 NC_007930.1 8298 8630 D hypothetical protein 8298..8630 Lactobacillus salivarius UCC118 3978494 YP_536630.1 CDS pepN NC_007930.1 8751 11285 R COG0308 [E] Aminopeptidase N; aminopeptidase N complement(8751..11285) Lactobacillus salivarius UCC118 3978495 YP_536631.1 CDS LSL_1746 NC_007930.1 12146 12994 R COG0656 [R] Aldo/keto reductases, related to diketogulonate reductase; oxidoreductase complement(12146..12994) Lactobacillus salivarius UCC118 3978496 YP_536632.1 CDS LSL_1747 NC_007930.1 13205 13828 R COG2095 [U] Multiple antibiotic transporter; hypothetical protein complement(13205..13828) Lactobacillus salivarius UCC118 3978497 YP_536633.1 CDS adhC NC_007930.1 14190 15311 D COG1062 [C] Zn-dependent alcohol dehydrogenases, class III; Aryl-alcohol dehydrogenase 14190..15311 Lactobacillus salivarius UCC118 3978498 YP_536634.1 CDS LSL_1749 NC_007930.1 15417 16067 R hypothetical protein complement(15417..16067) Lactobacillus salivarius UCC118 3978499 YP_536635.1 CDS LSL_1750 NC_007930.1 16070 17089 R COG2207 [K] AraC-type DNA-binding domain-containing proteins; AraC family transcriptional regulator complement(16070..17089) Lactobacillus salivarius UCC118 3978500 YP_536636.1 CDS proP NC_007930.1 17357 18616 D COG0477 [GEPR] Permeases of the major facilitator superfamily; L-rhamnose-proton symport 17357..18616 Lactobacillus salivarius UCC118 3978501 YP_536637.1 CDS rhaB NC_007930.1 18637 20094 D COG1070 [G] Sugar (pentulose and hexulose) kinases; rhamnulokinase 18637..20094 Lactobacillus salivarius UCC118 3978502 YP_536638.1 CDS LSL_1753 NC_007930.1 20099 20425 D COG0011 [S] Uncharacterized conserved protein; hypothetical protein 20099..20425 Lactobacillus salivarius UCC118 3978503 YP_536639.1 CDS LSL_1754 NC_007930.1 20438 21703 D catalyzes the formation of L-rhamnulose from L-rhamnose; L-rhamnose isomerase 20438..21703 Lactobacillus salivarius UCC118 3978504 YP_536640.1 CDS araD NC_007930.1 21793 22608 D COG0235 [G] Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; rhamnulose-1-phosphate aldolase 21793..22608 Lactobacillus salivarius UCC118 3978505 YP_536641.1 CDS LSL_1756 NC_007930.1 22914 24629 R hypothetical protein complement(22914..24629) Lactobacillus salivarius UCC118 3978506 YP_536642.1 CDS LSL_1757 NC_007930.1 25066 25950 D hypothetical protein 25066..25950 Lactobacillus salivarius UCC118 3978507 YP_536643.1 CDS xerC NC_007930.1 26117 27043 R COG0582 [L] Integrase; DNA integration/recombination/inversion protein complement(26117..27043) Lactobacillus salivarius UCC118 3978508 YP_536644.1 CDS LSL_1758b NC_007930.1 27261 27818 D hypothetical protein 27261..27818 Lactobacillus salivarius UCC118 3978509 YP_536645.1 CDS LSL_1758c NC_007930.1 27820 29217 D modification subunit 27820..29217 Lactobacillus salivarius UCC118 3978474 YP_536646.1 CDS LSL_1758d NC_007930.1 29230 29481 D hypothetical protein 29230..29481 Lactobacillus salivarius UCC118 3978475 YP_536647.1 CDS LSL_1759 NC_007930.1 35658 38285 D COG0718 [S] Uncharacterized protein conserved in bacteria; Type III restriction-modification system restriction subunit 35658..38285 Lactobacillus salivarius UCC118 3978479 YP_536648.1 CDS LSL_1760 NC_007930.1 38418 41603 D COG1196 [D] Chromosome segregation ATPases; hypothetical protein 38418..41603 Lactobacillus salivarius UCC118 3978480 YP_536649.1 CDS LSL_1761 NC_007930.1 41703 42041 D hypothetical protein 41703..42041 Lactobacillus salivarius UCC118 3978481 YP_536650.1 CDS LSL_1762 NC_007930.1 42081 44138 D hypothetical protein 42081..44138 Lactobacillus salivarius UCC118 3978482 YP_536651.1 CDS LSL_1763 NC_007930.1 44135 44698 D hypothetical protein 44135..44698 Lactobacillus salivarius UCC118 3978483 YP_536652.1 CDS LSL_1764 NC_007930.1 44774 47551 D COG0464 [O] ATPases of the AAA+ class; ATPase of the AAA+ class 44774..47551 Lactobacillus salivarius UCC118 3978484 YP_536653.1 CDS LSL_1765 NC_007930.1 47582 48832 D hypothetical protein 47582..48832 Lactobacillus salivarius UCC118 3978485 YP_536654.1 CDS LSL_1766 NC_007930.1 48966 49082 D hypothetical protein 48966..49082 Lactobacillus salivarius UCC118 3978486 YP_536655.1 CDS potE NC_007930.1 49367 50761 R COG0531 [E] Amino acid transporters; alanine permease complement(49367..50761) Lactobacillus salivarius UCC118 3978487 YP_536656.1 CDS ald NC_007930.1 50801 51904 R COG0686 [E] Alanine dehydrogenase; alanine dehydrogenase complement(50801..51904) Lactobacillus salivarius UCC118 3978488 YP_536657.1 CDS LSL_1769 NC_007930.1 52433 53200 R COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein complement(52433..53200) Lactobacillus salivarius UCC118 3978489 YP_536658.1 CDS LSL_1770 NC_007930.1 53287 53796 R hypothetical protein complement(53287..53796) Lactobacillus salivarius UCC118 3978490 YP_536659.1 CDS LSL_1771 NC_007930.1 53945 54787 D COG0718 [S] Uncharacterized protein conserved in bacteria; DegV family protein 53945..54787 Lactobacillus salivarius UCC118 3978286 YP_536660.1 CDS wecD NC_007930.1 54961 55395 D COG0454 [KR] Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase 54961..55395 Lactobacillus salivarius UCC118 3978287 YP_536661.1 CDS LSL_1773 NC_007930.1 55468 56421 D hypothetical protein 55468..56421 Lactobacillus salivarius UCC118 3978288 YP_536662.1 CDS himA NC_007930.1 56488 56763 R COG0776 [L] Bacterial nucleoid DNA-binding protein; DNA-binding protein HU complement(56488..56763) Lactobacillus salivarius UCC118 3978289 YP_536663.1 CDS LSL_1775 NC_007930.1 62003 62206 D hypothetical protein 62003..62206 Lactobacillus salivarius UCC118 3978291 YP_536664.1 CDS LSL_1776 NC_007930.1 62267 62521 D hypothetical protein 62267..62521 Lactobacillus salivarius UCC118 3978292 YP_536665.1 CDS LSL_1777 NC_007930.1 62535 62702 D hypothetical protein 62535..62702 Lactobacillus salivarius UCC118 3978293 YP_536666.1 CDS LSL_1778 NC_007930.1 62874 63569 D COG1018 [C] Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; hypothetical protein 62874..63569 Lactobacillus salivarius UCC118 3978294 YP_536667.1 CDS LSL_1779 NC_007930.1 63727 64158 R COG0675 [L] Transposase and inactivated derivatives; IS200/IS605 family transposase complement(63727..64158) Lactobacillus salivarius UCC118 3978295 YP_536668.1 CDS LSL_1780 NC_007930.1 64258 65535 D COG0675 [L] Transposase and inactivated derivatives; IS200/IS605 family transposase 64258..65535 Lactobacillus salivarius UCC118 3978296 YP_536669.1 CDS dps NC_007930.1 65875 66447 D COG0783 [P] DNA-binding ferritin-like protein (oxidative damage protectant); non-specific DNA-binding protein / Iron-binding ferritin-like antioxidant protein / ferroxidase 65875..66447 Lactobacillus salivarius UCC118 3978297 YP_536670.1 CDS LSL_1782 NC_007930.1 66592 67296 D COG0664 [T] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; Crp family transcriptional regulator 66592..67296 Lactobacillus salivarius UCC118 3978298 YP_536671.1 CDS LSL_1784 NC_007930.1 68867 69100 D COG2608 [P] Copper chaperone; hypothetical protein 68867..69100 Lactobacillus salivarius UCC118 3978301 YP_536672.1 CDS LSL_1785 NC_007930.1 69114 69281 R hypothetical protein complement(69114..69281) Lactobacillus salivarius UCC118 3978302 YP_536673.1 CDS zntA NC_007930.1 69419 71323 D COG0474 [P] Cation transport ATPase; lead, cadmium, zinc and mercury transporting ATPase 69419..71323 Lactobacillus salivarius UCC118 3978303 YP_536674.1 CDS LSL_1787 NC_007930.1 71563 71844 D COG0675 [L] Transposase and inactivated derivatives; IS3 family transposase 71563..71844 Lactobacillus salivarius UCC118 3978304 YP_536675.1 CDS LSL_1788 NC_007930.1 71919 72746 D COG0675 [L] Transposase and inactivated derivatives; IS3 family transposase 71919..72746 Lactobacillus salivarius UCC118 3978305 YP_536676.1 CDS LSL_1789 NC_007930.1 73185 74384 R COG0477 [GEPR] Permeases of the major facilitator superfamily; transport protein complement(73185..74384) Lactobacillus salivarius UCC118 3978306 YP_536677.1 CDS LSL_1790 NC_007930.1 74697 75917 D COG0477 [GEPR] Permeases of the major facilitator superfamily; transport protein 74697..75917 Lactobacillus salivarius UCC118 3978307 YP_536678.1 CDS LSL_1791 NC_007930.1 75969 76865 R COG0583 [K] Transcriptional regulator; LysR family transcriptional regulator complement(75969..76865) Lactobacillus salivarius UCC118 3978308 YP_536679.1 CDS LSL_1792 NC_007930.1 77024 77860 D COG1082 [G] Sugar phosphate isomerases/epimerases; hypothetical protein 77024..77860 Lactobacillus salivarius UCC118 3978309 YP_536680.1 CDS kduD NC_007930.1 77889 78716 D COG1028 [IQR] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 2-deoxy-D-gluconate 3-dehydrogenase 77889..78716 Lactobacillus salivarius UCC118 3978310 YP_536681.1 CDS sdhA NC_007930.1 78736 80451 D COG1053 [C] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; fumarate reductase flavoprotein subunit 78736..80451 Lactobacillus salivarius UCC118 3978311 YP_536682.1 CDS aroE NC_007930.1 80472 81347 D AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 80472..81347 Lactobacillus salivarius UCC118 3978312 YP_536683.1 CDS aroD NC_007930.1 81360 82118 D catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase 81360..82118 Lactobacillus salivarius UCC118 3978313 YP_536684.1 CDS xerS NC_007930.1 82166 83263 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerS; site-specific tyrosine recombinase XerS complement(82166..83263) Lactobacillus salivarius UCC118 3978314 YP_536685.1 CDS LSL_1798 NC_007930.1 83642 83899 D hypothetical protein 83642..83899 Lactobacillus salivarius UCC118 3978315 YP_536686.1 CDS LSL_1799 NC_007930.1 83949 84182 D hypothetical protein 83949..84182 Lactobacillus salivarius UCC118 3978316 YP_536687.1 CDS LSL_1800 NC_007930.1 84228 84452 D hypothetical protein 84228..84452 Lactobacillus salivarius UCC118 3978317 YP_536688.1 CDS LSL_1801 NC_007930.1 84545 85495 D COG3049 [M] Penicillin V acylase and related amidases; choloylglycine hydrolase 84545..85495 Lactobacillus salivarius UCC118 3978318 YP_536689.1 CDS LSL_1802 NC_007930.1 85617 86414 R COG2365 [T] Protein tyrosine/serine phosphatase; protein tyrosine phosphatase complement(85617..86414) Lactobacillus salivarius UCC118 3978319 YP_536690.1 CDS citB NC_007930.1 86487 87092 R COG2197 [TK] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; two-component response regulator complement(86487..87092) Lactobacillus salivarius UCC118 3978320 YP_536691.1 CDS baeS NC_007930.1 87095 88204 R COG0642 [T] Signal transduction histidine kinase; sensory transduction protein kinase complement(87095..88204) Lactobacillus salivarius UCC118 3978321 YP_536692.1 CDS LSL_1804b NC_007930.1 88204 88953 R ABC transporter, permease protein complement(88204..88953) Lactobacillus salivarius UCC118 3978322 YP_536693.1 CDS LSL_1805 NC_007930.1 88956 89831 R COG1131 [V] ABC-type multidrug transport system, ATPase component; ABC transporter, ATP-binding protein complement(88956..89831) Lactobacillus salivarius UCC118 3978419 YP_536694.1 CDS rpiA NC_007930.1 90068 90751 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 90068..90751 Lactobacillus salivarius UCC118 3978420 YP_536695.1 CDS rpe NC_007930.1 90768 91415 D COG0036 [G] Pentose-5-phosphate-3-epimerase; ribulose-phosphate 3-epimerase 90768..91415 Lactobacillus salivarius UCC118 3978421 YP_536696.1 CDS LSL_1808 NC_007930.1 91485 92000 D hypothetical protein 91485..92000 Lactobacillus salivarius UCC118 3978422 YP_536697.1 CDS LSL_1809 NC_007930.1 93534 93815 R hypothetical protein complement(93534..93815) Lactobacillus salivarius UCC118 3978424 YP_536698.1 CDS LSL_1810 NC_007930.1 93925 94578 R hypothetical protein complement(93925..94578) Lactobacillus salivarius UCC118 3978425 YP_536699.1 CDS LSL_1811 NC_007930.1 94591 95145 R hypothetical protein complement(94591..95145) Lactobacillus salivarius UCC118 3978426 YP_536700.1 CDS LSL_1812 NC_007930.1 95157 96437 R hypothetical protein complement(95157..96437) Lactobacillus salivarius UCC118 3978427 YP_536701.1 CDS LSL_1813 NC_007930.1 96647 98575 R COG3451 [U] Type IV secretory pathway, VirB4 components; putative conjugation-related ATPase complement(96647..98575) Lactobacillus salivarius UCC118 3978428 YP_536702.1 CDS LSL_1814 NC_007930.1 98594 99259 R hypothetical protein complement(98594..99259) Lactobacillus salivarius UCC118 3978429 YP_536703.1 CDS LSL_1815 NC_007930.1 99265 99579 R hypothetical protein complement(99265..99579) Lactobacillus salivarius UCC118 3978430 YP_536704.1 CDS LSL_1816 NC_007930.1 99693 102005 R hypothetical protein complement(99693..102005) Lactobacillus salivarius UCC118 3978431 YP_536705.1 CDS traG NC_007930.1 102007 104871 R COG3505 [U] Type IV secretory pathway, VirD4 components; conjugation-related ATPase complement(102007..104871) Lactobacillus salivarius UCC118 3978432 YP_536706.1 CDS LSL_1818 NC_007930.1 104934 107351 R hypothetical protein complement(104934..107351) Lactobacillus salivarius UCC118 3978433 YP_536707.1 CDS LSL_1819 NC_007930.1 107481 107819 R hypothetical protein complement(107481..107819) Lactobacillus salivarius UCC118 3978434 YP_536708.1 CDS LSL_1820 NC_007930.1 107894 108181 R hypothetical protein complement(107894..108181) Lactobacillus salivarius UCC118 3978435 YP_536709.1 CDS clpA NC_007930.1 108193 110013 R COG0542 [O] ATPases with chaperone activity, ATP-binding subunit; ATP-dependent Clp protease complement(108193..110013) Lactobacillus salivarius UCC118 3978436 YP_536710.1 CDS LSL_1822 NC_007930.1 110024 110443 R hypothetical protein complement(110024..110443) Lactobacillus salivarius UCC118 3978456 YP_536711.1 CDS LSL_1823 NC_007930.1 110462 111172 R hypothetical protein complement(110462..111172) Lactobacillus salivarius UCC118 3978457 YP_536712.1 CDS topA NC_007930.1 111190 113430 R COG0550 [L] Topoisomerase IA; topoisomerase-like protein complement(111190..113430) Lactobacillus salivarius UCC118 3978458 YP_536713.1 CDS LSL_1825 NC_007930.1 113442 114605 R hypothetical protein complement(113442..114605) Lactobacillus salivarius UCC118 3978459 YP_536714.1 CDS LSL_1826 NC_007930.1 114819 118508 R COG0419 [L] ATPase involved in DNA repair; hypothetical protein complement(114819..118508) Lactobacillus salivarius UCC118 3978460 YP_536715.1 CDS LSL_1827 NC_007930.1 118441 118842 R hypothetical protein complement(118441..118842) Lactobacillus salivarius UCC118 3978461 YP_536716.1 CDS LSL_1828 NC_007930.1 118842 119090 R hypothetical protein complement(118842..119090) Lactobacillus salivarius UCC118 3978462 YP_536717.1 CDS LSL_1829 NC_007930.1 119255 120433 R putative type II restriction enzyme complement(119255..120433) Lactobacillus salivarius UCC118 3978463 YP_536718.1 CDS LSL_1830 NC_007930.1 120426 122510 R Type II restriction-modification system methylation subunit complement(120426..122510) Lactobacillus salivarius UCC118 3978464 YP_536719.1 CDS LSL_1831 NC_007930.1 122787 123188 R hypothetical protein complement(122787..123188) Lactobacillus salivarius UCC118 3978465 YP_536720.1 CDS LSL_1832 NC_007930.1 123188 123409 R hypothetical protein complement(123188..123409) Lactobacillus salivarius UCC118 3978466 YP_536721.1 CDS LSL_1832c NC_007930.1 126189 127001 D hypothetical protein 126189..127001 Lactobacillus salivarius UCC118 3978468 YP_536722.1 CDS xerC NC_007930.1 129066 129995 D COG0582 [L] Integrase; DNA integration/recombination/inversion protein 129066..129995 Lactobacillus salivarius UCC118 3978470 YP_536723.1 CDS LSL_1834 NC_007930.1 130037 130789 R COG0011 [S] Uncharacterized conserved protein; hypothetical protein complement(130037..130789) Lactobacillus salivarius UCC118 3978471 YP_536724.1 CDS LSL_1835 NC_007930.1 130948 132078 R COG2856 [E] Predicted Zn peptidase; transcriptional regulator complement(130948..132078) Lactobacillus salivarius UCC118 3978472 YP_536725.1 CDS LSL_1836 NC_007930.1 132056 132721 R hypothetical protein complement(132056..132721) Lactobacillus salivarius UCC118 3978473 YP_536726.1 CDS LSL_1837 NC_007930.1 132849 133208 R hypothetical protein complement(132849..133208) Lactobacillus salivarius UCC118 3978340 YP_536727.1 CDS lspD NC_007930.1 133231 134712 R COG3064 [M] Membrane protein involved in colicin uptake; surface protein complement(133231..134712) Lactobacillus salivarius UCC118 3978341 YP_536728.1 CDS LSL_1839 NC_007930.1 134987 135358 D COG0583 [K] Transcriptional regulator; transcriptional regulator 134987..135358 Lactobacillus salivarius UCC118 3978342 YP_536729.1 CDS LSL_1840 NC_007930.1 136215 136355 R hypothetical protein complement(136215..136355) Lactobacillus salivarius UCC118 3978343 YP_536730.1 CDS LSL_1841 NC_007930.1 136348 136509 R hypothetical protein complement(136348..136509) Lactobacillus salivarius UCC118 3978344 YP_536731.1 CDS LSL_1842 NC_007930.1 136611 136985 R hypothetical protein complement(136611..136985) Lactobacillus salivarius UCC118 3978345 YP_536732.1 CDS LSL_1843 NC_007930.1 136928 137593 R hypothetical protein complement(136928..137593) Lactobacillus salivarius UCC118 3978346 YP_536733.1 CDS LSL_1844 NC_007930.1 137590 137973 R hypothetical protein complement(137590..137973) Lactobacillus salivarius UCC118 3978347 YP_536734.1 CDS LSL_1845 NC_007930.1 140263 140685 R hypothetical protein complement(140263..140685) Lactobacillus salivarius UCC118 3978349 YP_536735.1 CDS LSL_1846 NC_007930.1 140682 141164 R hypothetical protein complement(140682..141164) Lactobacillus salivarius UCC118 3978350 YP_536736.1 CDS LSL_1847 NC_007930.1 141177 141533 R hypothetical protein complement(141177..141533) Lactobacillus salivarius UCC118 3978351 YP_536737.1 CDS LSL_1848 NC_007930.1 142260 142574 R hypothetical protein complement(142260..142574) Lactobacillus salivarius UCC118 3978353 YP_536738.1 CDS LSL_1849 NC_007930.1 143083 143379 R hypothetical protein complement(143083..143379) Lactobacillus salivarius UCC118 3978354 YP_536739.1 CDS LSL_1850 NC_007930.1 143412 143924 R hypothetical protein complement(143412..143924) Lactobacillus salivarius UCC118 3978355 YP_536740.1 CDS LSL_1851 NC_007930.1 144031 144711 R hypothetical protein complement(144031..144711) Lactobacillus salivarius UCC118 3978356 YP_536741.1 CDS LSL_1852 NC_007930.1 144823 145038 R hypothetical protein complement(144823..145038) Lactobacillus salivarius UCC118 3978357 YP_536742.1 CDS LSL_1853 NC_007930.1 145031 145231 R hypothetical protein complement(145031..145231) Lactobacillus salivarius UCC118 3978268 YP_536743.1 CDS LSL_1854 NC_007930.1 145271 146272 R hypothetical protein complement(145271..146272) Lactobacillus salivarius UCC118 3978269 YP_536744.1 CDS LSL_1855 NC_007930.1 146269 146763 R putative thioredoxin-like protein complement(146269..146763) Lactobacillus salivarius UCC118 3978270 YP_536745.1 CDS LSL_1856 NC_007930.1 146776 146991 R hypothetical protein complement(146776..146991) Lactobacillus salivarius UCC118 3978271 YP_536746.1 CDS LSL_1857 NC_007930.1 146942 147349 R hypothetical protein complement(146942..147349) Lactobacillus salivarius UCC118 3978272 YP_536747.1 CDS LSL_1858 NC_007930.1 149960 150106 R hypothetical protein complement(149960..150106) Lactobacillus salivarius UCC118 3978275 YP_536748.1 CDS LSL_1859 NC_007930.1 150202 150354 D hypothetical protein 150202..150354 Lactobacillus salivarius UCC118 3978276 YP_536749.1 CDS LSL_1860 NC_007930.1 150296 150454 R hypothetical protein complement(150296..150454) Lactobacillus salivarius UCC118 3978277 YP_536750.1 CDS LSL_1861 NC_007930.1 150785 150985 R putative phage-related DNA binding protein complement(150785..150985) Lactobacillus salivarius UCC118 3978278 YP_536751.1 CDS LSL_1862 NC_007930.1 151191 151613 D hypothetical protein 151191..151613 Lactobacillus salivarius UCC118 3978279 YP_536752.1 CDS LSL_2159 NC_007930.1 152335 153105 R hypothetical protein complement(152335..153105) Lactobacillus salivarius UCC118 3978280 YP_536753.1 CDS LSL_1863 NC_007930.1 153299 153529 R hypothetical protein complement(153299..153529) Lactobacillus salivarius UCC118 3978281 YP_536754.1 CDS LSL_1864 NC_007930.1 153777 154022 R hypothetical protein complement(153777..154022) Lactobacillus salivarius UCC118 3978282 YP_536755.1 CDS LSL_1865 NC_007930.1 154275 154523 R hypothetical protein complement(154275..154523) Lactobacillus salivarius UCC118 3978283 YP_536756.1 CDS LSL_1866 NC_007930.1 154628 157306 R hypothetical protein complement(154628..157306) Lactobacillus salivarius UCC118 3978284 YP_536757.1 CDS LSL_1867 NC_007930.1 157427 157726 D hypothetical protein 157427..157726 Lactobacillus salivarius UCC118 3978285 YP_536758.1 CDS LSL_1868 NC_007930.1 157852 159081 D hypothetical protein 157852..159081 Lactobacillus salivarius UCC118 3978437 YP_536759.1 CDS LSL_1869 NC_007930.1 159101 159490 D hypothetical protein 159101..159490 Lactobacillus salivarius UCC118 3978438 YP_536760.1 CDS LSL_1870 NC_007930.1 160095 160397 D hypothetical protein 160095..160397 Lactobacillus salivarius UCC118 3978439 YP_536761.1 CDS LSL_1871 NC_007930.1 160655 161533 D COG1752 [R] Predicted esterase of the alpha-beta hydrolase superfamily; hydrolase 160655..161533 Lactobacillus salivarius UCC118 3978440 YP_536762.1 CDS pflA NC_007930.1 161619 162455 R COG1180 [O] Pyruvate-formate lyase-activating enzyme; pyruvate formate-lyase activating enzyme complement(161619..162455) Lactobacillus salivarius UCC118 3978441 YP_536763.1 CDS pflD NC_007930.1 162482 164749 R COG1882 [C] Pyruvate-formate lyase; formate acetyltransferase complement(162482..164749) Lactobacillus salivarius UCC118 3978442 YP_536764.1 CDS LSL_1874 NC_007930.1 165122 166411 R COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase complement(165122..166411) Lactobacillus salivarius UCC118 3978443 YP_536765.1 CDS LSL_1875 NC_007930.1 166575 167159 R COG0700 [S] Uncharacterized membrane protein; hypothetical protein complement(166575..167159) Lactobacillus salivarius UCC118 3978444 YP_536766.1 CDS sufB NC_007930.1 169115 170518 R COG0719 [O] ABC-type transport system involved in Fe-S cluster assembly, permease component; ABC transporter-associated protein complement(169115..170518) Lactobacillus salivarius UCC118 3978446 YP_536767.1 CDS iscU NC_007930.1 170511 170960 R COG0822 [C] NifU homolog involved in Fe-S cluster formation; IscU protein complement(170511..170960) Lactobacillus salivarius UCC118 3978447 YP_536768.1 CDS LSL_1879 NC_007930.1 170957 172186 R COG0520 [E] Selenocysteine lyase; putative aminotransferase complement(170957..172186) Lactobacillus salivarius UCC118 3978448 YP_536769.1 CDS sufD NC_007930.1 172170 173420 R COG0719 [O] ABC-type transport system involved in Fe-S cluster assembly, permease component; SufD protein complement(172170..173420) Lactobacillus salivarius UCC118 3978449 YP_536770.1 CDS LSL_1881 NC_007930.1 173433 174212 R COG0396 [O] ABC-type transport system involved in Fe-S cluster assembly, ATPase component; ABC transporter, ATP-binding protein complement(173433..174212) Lactobacillus salivarius UCC118 3978450 YP_536771.1 CDS LSL_1882 NC_007930.1 174475 176109 R COG4166 [E] ABC-type oligopeptide transport system, periplasmic component; oligopeptide-binding protein oppA complement(174475..176109) Lactobacillus salivarius UCC118 3978451 YP_536772.1 CDS LSL_1883 NC_007930.1 176562 177719 R hypothetical protein complement(176562..177719) Lactobacillus salivarius UCC118 3978452 YP_536773.1 CDS LSL_1884 NC_007930.1 177913 178185 R hypothetical protein complement(177913..178185) Lactobacillus salivarius UCC118 3978453 YP_536774.1 CDS LSL_1885 NC_007930.1 178566 178766 R hypothetical protein complement(178566..178766) Lactobacillus salivarius UCC118 3978454 YP_536775.1 CDS LSL_1886 NC_007930.1 179025 180074 R COG3641 [R] Predicted membrane protein, putative toxin regulator; hypothetical protein complement(179025..180074) Lactobacillus salivarius UCC118 3978455 YP_536776.1 CDS ldhD NC_007930.1 180281 181276 D COG1052 [CHR] Lactate dehydrogenase and related dehydrogenases; D-lactate dehydrogenase 180281..181276 Lactobacillus salivarius UCC118 3978358 YP_536777.1 CDS mipB NC_007930.1 181337 182017 R similar to transaldolase from Escherichia coli; many organisms have multiple copies; fructose-6-phosphate aldolase complement(181337..182017) Lactobacillus salivarius UCC118 3978359 YP_536778.1 CDS LSL_1889 NC_007930.1 182084 182464 R COG3731 [G] Phosphotransferase system sorbitol-specific component IIA; PTS system, glucitol/sorbitol-specific IIA component complement(182084..182464) Lactobacillus salivarius UCC118 3978360 YP_536779.1 CDS LSL_1890 NC_007930.1 182501 183526 R COG3732 [G] Phosphotransferase system sorbitol-specific component IIBC; PTS system, glucitol/sorbitol-specific IIBC component complement(182501..183526) Lactobacillus salivarius UCC118 3978361 YP_536780.1 CDS LSL_1891 NC_007930.1 183543 184085 R COG3730 [G] Phosphotransferase system sorbitol-specific component IIC; PTS system, glucitol/sorbitol-specific IIC2 component complement(183543..184085) Lactobacillus salivarius UCC118 3978362 YP_536781.1 CDS LSL_1892 NC_007930.1 184097 184594 R sorbitol operon activator complement(184097..184594) Lactobacillus salivarius UCC118 3978363 YP_536782.1 CDS LSL_1893 NC_007930.1 184595 186454 R COG3711 [K] Transcriptional antiterminator; sorbitol operon transcription regulator complement(184595..186454) Lactobacillus salivarius UCC118 3978364 YP_536783.1 CDS LSL_1894 NC_007930.1 186470 187273 R Converts D-sorbitol-dphosphate to D-fructose-6-phosphate; sorbitol-6-phosphate 2-dehydrogenase complement(186470..187273) Lactobacillus salivarius UCC118 3978365 YP_536784.1 CDS LSL_1895 NC_007930.1 188605 188781 R hypothetical protein complement(188605..188781) Lactobacillus salivarius UCC118 3978367 YP_536785.1 CDS LSL_1896 NC_007930.1 188834 189226 R hypothetical protein complement(188834..189226) Lactobacillus salivarius UCC118 3978368 YP_536786.1 CDS LSL_1897 NC_007930.1 189328 189531 R hypothetical protein complement(189328..189531) Lactobacillus salivarius UCC118 3978369 YP_536787.1 CDS LSL_1898 NC_007930.1 189521 190177 R hypothetical protein complement(189521..190177) Lactobacillus salivarius UCC118 3978370 YP_536788.1 CDS LSL_1899 NC_007930.1 190296 190436 R hypothetical protein complement(190296..190436) Lactobacillus salivarius UCC118 3978371 YP_536789.1 CDS LSL_1900 NC_007930.1 190471 191367 R COG2070 [R] Dioxygenases related to 2-nitropropane dioxygenase; dioxygenase/reductase complement(190471..191367) Lactobacillus salivarius UCC118 3978372 YP_536790.1 CDS LSL_1901 NC_007930.1 191470 194127 R COG1012 [C] NAD-dependent aldehyde dehydrogenases; acetylating; bifunctional acetaldehyde-CoA/alcohol dehydrogenase complement(191470..194127) Lactobacillus salivarius UCC118 3978373 YP_536791.1 CDS LSL_1903 NC_007930.1 195235 197205 R COG0718 [S] Uncharacterized protein conserved in bacteria; fructose-1,6-bisphosphatase complement(195235..197205) Lactobacillus salivarius UCC118 3978375 YP_536792.1 CDS LSL_1905 NC_007930.1 197465 198286 D hypothetical protein 197465..198286 Lactobacillus salivarius UCC118 3978395 YP_536793.1 CDS LSL_1906 NC_007930.1 198322 198588 D hypothetical protein 198322..198588 Lactobacillus salivarius UCC118 3978396 YP_536794.1 CDS LSL_1907 NC_007930.1 198695 199219 R hypothetical protein complement(198695..199219) Lactobacillus salivarius UCC118 3978397 YP_536795.1 CDS LSL_1908 NC_007930.1 199292 199522 R hypothetical protein complement(199292..199522) Lactobacillus salivarius UCC118 3978398 YP_536796.1 CDS abpD NC_007930.1 199638 200792 R AbpD bacteriocin export accessory protein complement(199638..200792) Lactobacillus salivarius UCC118 3978399 YP_536797.1 CDS abpT NC_007930.1 200809 202968 R COG2274 [V] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain; AbpT bacteriocin export accessory protein complement(200809..202968) Lactobacillus salivarius UCC118 3978400 YP_536798.1 CDS LSL_1911 NC_007930.1 203118 203387 R hypothetical protein complement(203118..203387) Lactobacillus salivarius UCC118 3978401 YP_536799.1 CDS abpR NC_007930.1 203395 204189 R COG3279 [KT] Response regulator of the LytR/AlgR family; AbpR response regulator complement(203395..204189) Lactobacillus salivarius UCC118 3978402 YP_536800.1 CDS abpK NC_007930.1 204203 205492 R COG2972 [T] Predicted signal transduction protein with a C-terminal ATPase domain; AbpK sensory transduction histidine kinase complement(204203..205492) Lactobacillus salivarius UCC118 3978403 YP_536801.1 CDS abpIP NC_007930.1 205492 205608 R AbpIP induction peptide complement(205492..205608) Lactobacillus salivarius UCC118 3978404 YP_536802.1 CDS abpIM NC_007930.1 205728 205895 R AbpIM bacteriocin immunity protein complement(205728..205895) Lactobacillus salivarius UCC118 3978405 YP_536803.1 CDS abp118b NC_007930.1 206038 206244 R Abp118 bacteriocin beta peptide complement(206038..206244) Lactobacillus salivarius UCC118 3978406 YP_536804.1 CDS abp118a NC_007930.1 206262 206456 R Abp118 bacteriocin alpha peptide complement(206262..206456) Lactobacillus salivarius UCC118 3978407 YP_536805.1 CDS LSL_1918 NC_007930.1 206462 206719 R bacteriocin-like prepeptide complement(206462..206719) Lactobacillus salivarius UCC118 3978408 YP_536806.1 CDS LSL_1919 NC_007930.1 206824 206985 D hypothetical protein 206824..206985 Lactobacillus salivarius UCC118 3978409 YP_536807.1 CDS LSL_1920 NC_007930.1 207128 207280 R bacteriocin-like prepeptide complement(207128..207280) Lactobacillus salivarius UCC118 3978410 YP_536808.1 CDS LSL_1921 NC_007930.1 207404 207577 R nonfunctional salvaricin B precursor complement(207404..207577) Lactobacillus salivarius UCC118 3978411 YP_536809.1 CDS LSL_1922 NC_007930.1 207809 208072 D hypothetical protein 207809..208072 Lactobacillus salivarius UCC118 3978412 YP_536810.1 CDS LSL_1923 NC_007930.1 208111 208236 R hypothetical protein complement(208111..208236) Lactobacillus salivarius UCC118 3978413 YP_536811.1 CDS LSL_1924 NC_007930.1 208361 209329 D hypothetical protein 208361..209329 Lactobacillus salivarius UCC118 3978376 YP_536812.1 CDS LSL_1925 NC_007930.1 209512 209865 R hypothetical protein complement(209512..209865) Lactobacillus salivarius UCC118 3978377 YP_536813.1 CDS LSL_1926 NC_007930.1 209874 210143 R hypothetical protein complement(209874..210143) Lactobacillus salivarius UCC118 3978378 YP_536814.1 CDS avtA NC_007930.1 210302 211480 R produces methionine from 2-keto-4-methylthiobutyrate and glutamine in vitro; mutations do not affect methionine salvage in vivo however; transaminase complement(210302..211480) Lactobacillus salivarius UCC118 3978379 YP_536815.1 CDS LSL_1928 NC_007930.1 211498 212283 R COG0388 [R] Predicted amidohydrolase; carbon-nitrogen hydrolase family protein complement(211498..212283) Lactobacillus salivarius UCC118 3978380 YP_536816.1 CDS LSL_1929 NC_007930.1 212426 212926 R COG3471 [S] Predicted periplasmic/secreted protein; hypothetical protein complement(212426..212926) Lactobacillus salivarius UCC118 3978381 YP_536817.1 CDS LSL_1930 NC_007930.1 212944 213258 R COG2151 [R] Predicted metal-sulfur cluster biosynthetic enzyme; hypothetical protein complement(212944..213258) Lactobacillus salivarius UCC118 3978382 YP_536818.1 CDS sdaA NC_007930.1 213275 214156 R COG1760 [E] L-serine deaminase; L-serine dehydratase alpha subunit complement(213275..214156) Lactobacillus salivarius UCC118 3978383 YP_536819.1 CDS sdaB NC_007930.1 214169 214831 R COG1760 [E] L-serine deaminase; L-serine dehydratase beta subunit complement(214169..214831) Lactobacillus salivarius UCC118 3978384 YP_536820.1 CDS LSL_1933 NC_007930.1 215944 217380 R COG2211 [G] Na+/melibiose symporter and related transporters; hypothetical protein complement(215944..217380) Lactobacillus salivarius UCC118 3978386 YP_536821.1 CDS LSL_1934 NC_007930.1 217472 218587 R COG0673 [R] Predicted dehydrogenases and related proteins; putative oxidoreductase complement(217472..218587) Lactobacillus salivarius UCC118 3978387 YP_536822.1 CDS LSL_1935 NC_007930.1 218978 219427 D COG2731 [G] Beta-galactosidase, beta subunit; hypothetical protein 218978..219427 Lactobacillus salivarius UCC118 3978388 YP_536823.1 CDS ndk NC_007930.1 219500 219937 R COG0105 [F] Nucleoside diphosphate kinase; nucleoside diphosphate kinase complement(219500..219937) Lactobacillus salivarius UCC118 3978389 YP_536824.1 CDS nagC NC_007930.1 220022 220885 R COG1940 [KG] Transcriptional regulator/sugar kinase; glucokinase complement(220022..220885) Lactobacillus salivarius UCC118 3978390 YP_536825.1 CDS nanA NC_007930.1 221116 221988 D catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase 221116..221988 Lactobacillus salivarius UCC118 3978391 YP_536826.1 CDS nanE NC_007930.1 222008 222697 D Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 222008..222697 Lactobacillus salivarius UCC118 3978392 YP_536827.1 CDS LSL_1940 NC_007930.1 222743 223567 D COG1522 [K] Transcriptional regulators; RpiR family transcriptional regulator 222743..223567 Lactobacillus salivarius UCC118 3978393 YP_536828.1 CDS LSL_1941 NC_007930.1 223624 224241 D hypothetical protein 223624..224241 Lactobacillus salivarius UCC118 3978394 YP_536829.1 CDS potE NC_007930.1 224414 225901 D COG0531 [E] Amino acid transporters; amino acid permease 224414..225901 Lactobacillus salivarius UCC118 3978323 YP_536830.1 CDS LSL_1943 NC_007930.1 225956 226072 R hypothetical protein complement(225956..226072) Lactobacillus salivarius UCC118 3978324 YP_536831.1 CDS rpsN NC_007930.1 226083 226352 R COG0199 [J] Ribosomal protein S14; SSU ribosomal protein S14P complement(226083..226352) Lactobacillus salivarius UCC118 3978325 YP_536832.1 CDS fusA NC_007930.1 226555 228474 D COG0480 [J] Translation elongation factors (GTPases); tetracycline resistance protein 226555..228474 Lactobacillus salivarius UCC118 3978326 YP_536833.1 CDS tktA NC_007930.1 228631 230622 R COG0021 [G] Transketolase; transketolase complement(228631..230622) Lactobacillus salivarius UCC118 3978327 YP_536834.1 CDS mipB NC_007930.1 230640 231293 R similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; putative translaldolase complement(230640..231293) Lactobacillus salivarius UCC118 3978328 YP_536835.1 CDS rpe NC_007930.1 231730 232377 R COG0036 [G] Pentose-5-phosphate-3-epimerase; ribulose-phosphate 3-epimerase complement(231730..232377) Lactobacillus salivarius UCC118 3978329 YP_536836.1 CDS LSL_1949 NC_007930.1 232393 233223 R COG3716 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; PTS system, mannose-specific IID component complement(232393..233223) Lactobacillus salivarius UCC118 3978330 YP_536837.1 CDS LSL_1950 NC_007930.1 233223 233987 R COG3715 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; PTS system, mannose-specific IIC component complement(233223..233987) Lactobacillus salivarius UCC118 3978331 YP_536838.1 CDS LSL_1951 NC_007930.1 234005 234481 R COG3444 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB; PTS system, mannose-specific IIAB component complement(234005..234481) Lactobacillus salivarius UCC118 3978332 YP_536839.1 CDS manX NC_007930.1 234495 234941 R COG2893 [G] Phosphotransferase system, mannose/fructose-specific component IIA; PTS system, mannose-specific IIAB component complement(234495..234941) Lactobacillus salivarius UCC118 3978333 YP_536840.1 CDS tdh NC_007930.1 234955 236028 R COG1063 [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases; ribitol-5-phosphate 2-dehydrogenase complement(234955..236028) Lactobacillus salivarius UCC118 3978334 YP_536841.1 CDS LSL_1955 NC_007930.1 236246 237001 D COG1349 [KG] Transcriptional regulators of sugar metabolism; DeoR family transcriptional regulator 236246..237001 Lactobacillus salivarius UCC118 3978335 YP_536842.1 CDS LSL_1956 NC_007930.1 237097 239463 D COG3957 [G] Phosphoketolase; putative phosphoketolase 237097..239463 Lactobacillus salivarius UCC118 3978336 YP_536843.1 CDS LSL_1957 NC_007930.1 239744 240640 R COG0675 [L] Transposase and inactivated derivatives; IS1223 family transposase complement(239744..240640) Lactobacillus salivarius UCC118 3978337 YP_536844.1 CDS LSL_1958 NC_007930.1 240643 241161 R COG0675 [L] Transposase and inactivated derivatives; IS1223 family transposase complement(240643..241161) Lactobacillus salivarius UCC118 3978338 YP_536845.1 CDS LSL_1959 NC_007930.1 241215 241619 R hypothetical protein complement(241215..241619) Lactobacillus salivarius UCC118 3978339 LSL_RNA119 tRNA LSL_RNA119 NC_007929.1 219398 219472 D tRNA-Ile 219398..219472 Lactobacillus salivarius UCC118 3978078 LSL_RNA120 tRNA LSL_RNA120 NC_007929.1 219504 219576 D tRNA-Ala 219504..219576 Lactobacillus salivarius UCC118 3978079 LSL_RNA009 tRNA LSL_RNA009 NC_007929.1 222849 222921 D tRNA-Val 222849..222921 Lactobacillus salivarius UCC118 3978058 LSL_RNA010 tRNA LSL_RNA010 NC_007929.1 222925 222997 D tRNA-Lys 222925..222997 Lactobacillus salivarius UCC118 3978059 LSL_RNA011 tRNA LSL_RNA011 NC_007929.1 223013 223098 D tRNA-Leu 223013..223098 Lactobacillus salivarius UCC118 3978060 LSL_RNA012 tRNA LSL_RNA012 NC_007929.1 223107 223179 D tRNA-Thr 223107..223179 Lactobacillus salivarius UCC118 3978061 LSL_RNA013 tRNA LSL_RNA013 NC_007929.1 223184 223255 D tRNA-Gly 223184..223255 Lactobacillus salivarius UCC118 3978062 LSL_RNA014 tRNA LSL_RNA014 NC_007929.1 223265 223350 D tRNA-Leu 223265..223350 Lactobacillus salivarius UCC118 3978063 LSL_RNA015 tRNA LSL_RNA015 NC_007929.1 223359 223432 D tRNA-Arg 223359..223432 Lactobacillus salivarius UCC118 3978064 LSL_RNA016 tRNA LSL_RNA016 NC_007929.1 223480 223553 D tRNA-Arg 223480..223553 Lactobacillus salivarius UCC118 3978065 LSL_RNA017 tRNA LSL_RNA017 NC_007929.1 223558 223631 D tRNA-Pro 223558..223631 Lactobacillus salivarius UCC118 3978066 LSL_RNA018 tRNA LSL_RNA018 NC_007929.1 231540 231613 D tRNA-Pro 231540..231613 Lactobacillus salivarius UCC118 3978045 LSL_RNA019 tRNA LSL_RNA019 NC_007929.1 268098 268170 R tRNA-Thr complement(268098..268170) Lactobacillus salivarius UCC118 3978038 LSL_RNA121 tRNA LSL_RNA121 NC_007929.1 436484 436558 D tRNA-Ile 436484..436558 Lactobacillus salivarius UCC118 3976535 LSL_RNA122 tRNA LSL_RNA122 NC_007929.1 436590 436662 D tRNA-Ala 436590..436662 Lactobacillus salivarius UCC118 3976536 LSL_RNA123 tRNA LSL_RNA123 NC_007929.1 439935 440007 D tRNA-Asn 439935..440007 Lactobacillus salivarius UCC118 3976539 LSL_RNA030 tRNA LSL_RNA030 NC_007929.1 440022 440111 D tRNA-Ser 440022..440111 Lactobacillus salivarius UCC118 3976540 LSL_RNA124 tRNA LSL_RNA124 NC_007929.1 440126 440200 D tRNA-Glu 440126..440200 Lactobacillus salivarius UCC118 3976541 LSL_RNA032 tRNA LSL_RNA032 NC_007929.1 440203 440275 D tRNA-Val 440203..440275 Lactobacillus salivarius UCC118 3977106 LSL_RNA125 tRNA LSL_RNA125 NC_007929.1 440285 440357 D tRNA-Asp 440285..440357 Lactobacillus salivarius UCC118 3977107 LSL_RNA126 tRNA LSL_RNA126 NC_007929.1 440383 440458 D tRNA-Phe 440383..440458 Lactobacillus salivarius UCC118 3977108 LSL_RNA035 tRNA LSL_RNA035 NC_007929.1 440463 440545 D tRNA-Tyr 440463..440545 Lactobacillus salivarius UCC118 3977109 LSL_RNA036 tRNA LSL_RNA036 NC_007929.1 440558 440631 D tRNA-Trp 440558..440631 Lactobacillus salivarius UCC118 3977110 LSL_RNA037 tRNA LSL_RNA037 NC_007929.1 440638 440710 D tRNA-His 440638..440710 Lactobacillus salivarius UCC118 3977111 LSL_RNA038 tRNA LSL_RNA038 NC_007929.1 440722 440793 D tRNA-Gln 440722..440793 Lactobacillus salivarius UCC118 3977112 LSL_RNA039 tRNA LSL_RNA039 NC_007929.1 440803 440873 D tRNA-Cys 440803..440873 Lactobacillus salivarius UCC118 3977113 LSL_RNA040 tRNA LSL_RNA040 NC_007929.1 440904 440988 D tRNA-Leu 440904..440988 Lactobacillus salivarius UCC118 3977114 LSL_RNA045 tRNA LSL_RNA045 NC_007929.1 485249 485321 D tRNA-Val 485249..485321 Lactobacillus salivarius UCC118 3977066 LSL_RNA046 tRNA LSL_RNA046 NC_007929.1 485325 485397 D tRNA-Lys 485325..485397 Lactobacillus salivarius UCC118 3977067 LSL_RNA047 tRNA LSL_RNA047 NC_007929.1 485463 485535 D tRNA-Thr 485463..485535 Lactobacillus salivarius UCC118 3977045 LSL_RNA048 tRNA LSL_RNA048 NC_007929.1 485540 485611 D tRNA-Gly 485540..485611 Lactobacillus salivarius UCC118 3977046 LSL_RNA049 tRNA LSL_RNA049 NC_007929.1 485624 485709 D tRNA-Leu 485624..485709 Lactobacillus salivarius UCC118 3977047 LSL_RNA050 tRNA LSL_RNA050 NC_007929.1 485718 485791 D tRNA-Arg 485718..485791 Lactobacillus salivarius UCC118 3977048 LSL_RNA051 tRNA LSL_RNA051 NC_007929.1 485798 485871 D tRNA-Pro 485798..485871 Lactobacillus salivarius UCC118 3977049 LSL_RNA052 tRNA LSL_RNA052 NC_007929.1 485896 485969 D tRNA-Met 485896..485969 Lactobacillus salivarius UCC118 3977050 LSL_RNA053 tRNA LSL_RNA053 NC_007929.1 485986 486059 D tRNA-Met 485986..486059 Lactobacillus salivarius UCC118 3977051 LSL_RNA054 tRNA LSL_RNA054 NC_007929.1 486100 486189 D tRNA-Ser 486100..486189 Lactobacillus salivarius UCC118 3977052 LSL_RNA055 tRNA LSL_RNA055 NC_007929.1 486200 486273 D tRNA-Met 486200..486273 Lactobacillus salivarius UCC118 3977053 LSL_RNA056 tRNA LSL_RNA056 NC_007929.1 486278 486350 D tRNA-Asp 486278..486350 Lactobacillus salivarius UCC118 3977054 LSL_RNA057 tRNA LSL_RNA057 NC_007929.1 486360 486432 D tRNA-Phe 486360..486432 Lactobacillus salivarius UCC118 3977429 LSL_RNA058 tRNA LSL_RNA058 NC_007929.1 486452 486522 D tRNA-Gly 486452..486522 Lactobacillus salivarius UCC118 3977430 LSL_RNA059 tRNA LSL_RNA059 NC_007929.1 486531 486604 D tRNA-Ile 486531..486604 Lactobacillus salivarius UCC118 3977431 LSL_RNA060 tRNA LSL_RNA060 NC_007929.1 486608 486695 D tRNA-Ser 486608..486695 Lactobacillus salivarius UCC118 3977432 LSL_RNA061 tRNA LSL_RNA061 NC_007929.1 486700 486771 D tRNA-Glu 486700..486771 Lactobacillus salivarius UCC118 3977433 LSL_RNA062 tRNA LSL_RNA062 NC_007929.1 486794 486867 D tRNA-Met 486794..486867 Lactobacillus salivarius UCC118 3977434 LSL_RNA063 tRNA LSL_RNA063 NC_007929.1 486872 486944 D tRNA-Asp 486872..486944 Lactobacillus salivarius UCC118 3977435 LSL_RNA064 tRNA LSL_RNA064 NC_007929.1 497858 497941 R tRNA-Leu complement(497858..497941) Lactobacillus salivarius UCC118 3977612 LSL_RNA065 tRNA LSL_RNA065 NC_007929.1 567245 567318 R tRNA-Arg complement(567245..567318) Lactobacillus salivarius UCC118 3977228 LSL_RNA066 tRNA LSL_RNA066 NC_007929.1 624842 624914 D tRNA-Gln 624842..624914 Lactobacillus salivarius UCC118 3976711 LSL_RNA067 tRNA LSL_RNA067 NC_007929.1 723535 723605 R tRNA-Gly complement(723535..723605) Lactobacillus salivarius UCC118 3976903 LSL_RNA127 tRNA LSL_RNA127 NC_007929.1 797253 797323 D tRNA-OTHER 797253..797323 Lactobacillus salivarius UCC118 3978010 LSL_RNA068 tRNA LSL_RNA068 NC_007929.1 825965 826052 R tRNA-Ser complement(825965..826052) Lactobacillus salivarius UCC118 3977637 LSL_RNA069 tRNA LSL_RNA069 NC_007929.1 956549 956619 R tRNA-Gly complement(956549..956619) Lactobacillus salivarius UCC118 3977482 LSL_RNA070 tRNA LSL_RNA070 NC_007929.1 1130195 1130267 R tRNA-Glu complement(1130195..1130267) Lactobacillus salivarius UCC118 3977859 LSL_RNA071 tRNA LSL_RNA071 NC_007929.1 1203000 1203071 R tRNA-OTHER complement(1203000..1203071) Lactobacillus salivarius UCC118 3978003 LSL_RNA072 tRNA LSL_RNA072 NC_007929.1 1287765 1287850 R tRNA-Leu complement(1287765..1287850) Lactobacillus salivarius UCC118 3977290 LSL_RNA073 tRNA LSL_RNA073 NC_007929.1 1295428 1295499 R tRNA-Gln complement(1295428..1295499) Lactobacillus salivarius UCC118 3976461 LSL_RNA074 tRNA LSL_RNA074 NC_007929.1 1295503 1295588 R tRNA-Tyr complement(1295503..1295588) Lactobacillus salivarius UCC118 3976462 LSL_RNA078 tRNA LSL_RNA078 NC_007929.1 1326134 1326207 R tRNA-Arg complement(1326134..1326207) Lactobacillus salivarius UCC118 3976622 LSL_RNA079 tRNA LSL_RNA079 NC_007929.1 1406882 1406954 R tRNA-Thr complement(1406882..1406954) Lactobacillus salivarius UCC118 3977155 LSL_RNA080 tRNA LSL_RNA080 NC_007929.1 1406970 1407041 R tRNA-Glu complement(1406970..1407041) Lactobacillus salivarius UCC118 3977156 LSL_RNA081 tRNA LSL_RNA081 NC_007929.1 1407046 1407118 R tRNA-Asn complement(1407046..1407118) Lactobacillus salivarius UCC118 3977157 LSL_RNA085 tRNA LSL_RNA085 NC_007929.1 1754142 1754217 D tRNA-Lys 1754142..1754217 Lactobacillus salivarius UCC118 3976640 LSL_RNA086 tRNA LSL_RNA086 NC_007929.1 1763092 1763167 D tRNA-Lys 1763092..1763167 Lactobacillus salivarius UCC118 3977116 LSL_RNA087 tRNA LSL_RNA087 NC_007929.1 1812695 1812782 R tRNA-Leu complement(1812695..1812782) Lactobacillus salivarius UCC118 3977371 LSL_RNA088 tRNA LSL_RNA088 NC_007929.1 1812813 1812883 R tRNA-Cys complement(1812813..1812883) Lactobacillus salivarius UCC118 3976600 LSL_RNA089 tRNA LSL_RNA089 NC_007929.1 1812908 1812979 R tRNA-Gln complement(1812908..1812979) Lactobacillus salivarius UCC118 3976601 LSL_RNA090 tRNA LSL_RNA090 NC_007929.1 1812990 1813062 R tRNA-His complement(1812990..1813062) Lactobacillus salivarius UCC118 3976602 LSL_RNA091 tRNA LSL_RNA091 NC_007929.1 1813069 1813142 R tRNA-Trp complement(1813069..1813142) Lactobacillus salivarius UCC118 3976603 LSL_RNA092 tRNA LSL_RNA092 NC_007929.1 1813155 1813237 R tRNA-Tyr complement(1813155..1813237) Lactobacillus salivarius UCC118 3976604 LSL_RNA128 tRNA LSL_RNA128 NC_007929.1 1813242 1813317 R tRNA-Phe complement(1813242..1813317) Lactobacillus salivarius UCC118 3976605 LSL_RNA129 tRNA LSL_RNA129 NC_007929.1 1813343 1813415 R tRNA-Asp complement(1813343..1813415) Lactobacillus salivarius UCC118 3976606 LSL_RNA095 tRNA LSL_RNA095 NC_007929.1 1813425 1813497 R tRNA-Val complement(1813425..1813497) Lactobacillus salivarius UCC118 3976607 LSL_RNA130 tRNA LSL_RNA130 NC_007929.1 1813500 1813574 R tRNA-Glu complement(1813500..1813574) Lactobacillus salivarius UCC118 3976608 LSL_RNA097 tRNA LSL_RNA097 NC_007929.1 1813589 1813678 R tRNA-Ser complement(1813589..1813678) Lactobacillus salivarius UCC118 3977515 LSL_RNA131 tRNA LSL_RNA131 NC_007929.1 1813693 1813765 R tRNA-Asn complement(1813693..1813765) Lactobacillus salivarius UCC118 3977516 LSL_RNA132 tRNA LSL_RNA132 NC_007929.1 1817038 1817110 R tRNA-Ala complement(1817038..1817110) Lactobacillus salivarius UCC118 3977519 LSL_RNA133 tRNA LSL_RNA133 NC_007929.1 1817142 1817216 R tRNA-Ile complement(1817142..1817216) Lactobacillus salivarius UCC118 3977520 LSL_RNA001 rRNA LSL_RNA001 NC_007929.1 74540 76056 D 16S ribosomal RNA 74540..76056 Lactobacillus salivarius UCC118 3978205 LSL_RNA002 rRNA LSL_RNA002 NC_007929.1 76070 79029 D 23S ribosomal RNA 76070..79029 Lactobacillus salivarius UCC118 3978206 LSL_RNA003 rRNA LSL_RNA003 NC_007929.1 79274 79390 D 5S ribosomal RNA 79274..79390 Lactobacillus salivarius UCC118 3978207 LSL_RNA004 rRNA LSL_RNA004 NC_007929.1 217778 219294 D 16S ribosomal RNA 217778..219294 Lactobacillus salivarius UCC118 3978077 LSL_RNA007 rRNA LSL_RNA007 NC_007929.1 219703 222482 D 23S ribosomal RNA 219703..222482 Lactobacillus salivarius UCC118 3978080 LSL_RNA008 rRNA LSL_RNA008 NC_007929.1 222727 222843 D 5S ribosomal RNA 222727..222843 Lactobacillus salivarius UCC118 3978081 LSL_RNA021 rRNA LSL_RNA021 NC_007929.1 434853 436380 D 16S ribosomal RNA 434853..436380 Lactobacillus salivarius UCC118 3976534 LSL_RNA025 rRNA LSL_RNA025 NC_007929.1 436789 439568 D 23S ribosomal RNA 436789..439568 Lactobacillus salivarius UCC118 3976537 LSL_RNA108 rRNA LSL_RNA108 NC_007929.1 439813 439929 D 5S ribosomal RNA 439813..439929 Lactobacillus salivarius UCC118 3976538 LSL_RNA041 rRNA LSL_RNA041 NC_007929.1 480393 481909 D 16S ribosomal RNA 480393..481909 Lactobacillus salivarius UCC118 3977063 LSL_RNA042 rRNA LSL_RNA042 NC_007929.1 481923 484882 D 23S ribosomal RNA 481923..484882 Lactobacillus salivarius UCC118 3977064 LSL_RNA044 rRNA LSL_RNA044 NC_007929.1 485127 485243 D 5S ribosomal RNA 485127..485243 Lactobacillus salivarius UCC118 3977065 LSL_RNA075 rRNA LSL_RNA075 NC_007929.1 1297458 1297783 R 5S ribosomal RNA complement(1297458..1297783) Lactobacillus salivarius UCC118 3976464 LSL_RNA076 rRNA LSL_RNA076 NC_007929.1 1297819 1300778 R 23S ribosomal RNA complement(1297819..1300778) Lactobacillus salivarius UCC118 3976465 LSL_RNA077 rRNA LSL_RNA077 NC_007929.1 1300792 1302308 R 16S ribosomal RNA complement(1300792..1302308) Lactobacillus salivarius UCC118 3976466 LSL_RNA082 rRNA LSL_RNA082 NC_007929.1 1407124 1407240 R 5S ribosomal RNA complement(1407124..1407240) Lactobacillus salivarius UCC118 3977158 LSL_RNA083 rRNA LSL_RNA083 NC_007929.1 1407481 1410440 R 23S ribosomal RNA complement(1407481..1410440) Lactobacillus salivarius UCC118 3977159 LSL_RNA084 rRNA LSL_RNA084 NC_007929.1 1410454 1411970 R 16S ribosomal RNA complement(1410454..1411970) Lactobacillus salivarius UCC118 3977160 LSL_RNA099 rRNA LSL_RNA099 NC_007929.1 1813771 1813887 R 5S ribosomal RNA complement(1813771..1813887) Lactobacillus salivarius UCC118 3977517 LSL_RNA100 rRNA LSL_RNA100 NC_007929.1 1814132 1816911 R 23S ribosomal RNA complement(1814132..1816911) Lactobacillus salivarius UCC118 3977518 LSL_RNA103 rRNA LSL_RNA103 NC_007929.1 1817320 1818824 R 16S ribosomal RNA complement(1817320..1818824) Lactobacillus salivarius UCC118 3977521