-- dump date 20120504_151914 -- class Genbank::CDS -- table cds_note -- id note YP_003683457.1 COGs: COG0593 ATPase involved in DNA replication initiation; InterProIPR010921:IPR003593:IPR013159:IPR013317:IPR 001957:IPR018312:IPR020591; KEGG: ttj:TTHA1973 chromosomal replication initiation protein; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase; SPTR: C1XVB0 Chromosomal replication initiator protein dnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA YP_003683458.1 COGs: COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); InterPro IPR001001; KEGG: ttj:TTHA0001 DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; PRIAM: DNA-directed DNA polymerase; SMART: DNA polymerase III beta chain; SPTR: C1XVA9 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta subunit, C-terminal domain; DNA polymerase III beta subunit, N-terminal domain; DNA polymerase III beta subunit, central domain; TIGRFAM: DNA polymerase III, beta subunit YP_003683459.1 COGs: COG0148 Enolase; InterPro IPR020811:IPR020809:IPR000941:IPR020810; KEGG: ttj:TTHA0002 enolase (2-phosphoglycerate dehydratase); PFAM: Enolase-like; PRIAM: Phosphopyruvate hydratase; SPTR: C1XVA8 Enolase; TIGRFAM: enolase; PFAM: Enolase, N-terminal domain; Enolase, C-terminal TIM barrel domain; TIGRFAM: phosphopyruvate hydratase YP_003683460.1 COGs: COG0469 Pyruvate kinase; InterProIPR015813:IPR015795:IPR011037:IPR015793:IPR 015794:IPR001697:IPR018209; KEGG: ttj:TTHA0003 pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; PRIAM: Pyruvate kinase; SPTR: C1XVA7 Pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase, barrel domain; Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase YP_003683461.1 COGs: COG2124 Cytochrome P450; InterPro IPR001128:IPR000408:IPR002401:IPR017973; KEGG: npu:Npun_R1394 cytochrome P450; PFAM: cytochrome P450; SPTR: C1XLT7 Cytochrome P450; PFAM: Cytochrome P450 YP_003683462.1 InterPro IPR012337:IPR009057:IPR001584; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XT01 Integrase family protein; PFAM: Integrase core domain YP_003683463.1 InterPro IPR012337:IPR002559; KEGG: cau:Caur_2446 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: C1XPT2 Transposase family protein; PFAM: Transposase DDE domain YP_003683464.1 COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: ttj:TTHA1744 hypothetical protein; PFAM: LmbE family protein; SPTR: C1XN31 Uncharacterized LmbE-like protein; PFAM: GlcNAc-PI de-N-acetylase YP_003683465.1 KEGG: atc:AGR_C_1196 hypothetical protein; SPTR: A9CK24 Putative uncharacterized protein YP_003683466.1 COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: sco:SCP1.259 putative transposon transposase; PFAM: transposase mutator type; SPTR: C1XP69 Transposase; PFAM: Transposase, Mutator family YP_003683467.1 KEGG: hypothetical protein ; K12657 delta-1-pyrroline-5-carboxylate synthetase; SPTR: C1XS67 Putative uncharacterized protein (Fragment) YP_003683468.1 COGs: COG0219 rRNA methylase (SpoU class); InterPro IPR001537:IPR016914; KEGG: ttj:TTHA0054 RNA methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU); SPTR: C1XS66 Predicted rRNA methylase SpoU family; PFAM: SpoU rRNA Methylase family; TIGRFAM: rRNA methylase, putative, group 2 YP_003683469.1 COGs: COG0347 Nitrogen regulatory protein PII; InterPro IPR002187:IPR015867:IPR011322:IPR017918; KEGG: ttj:TTHA0057 nitrogen regulatory protein P-II; PFAM: nitrogen regulatory protein P-II; SPTR: C1XS65 Nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein P-II YP_003683470.1 COGs: COG0004 Ammonia permease; InterPro IPR001905:IPR018047; KEGG: ttj:TTHA0056 ammonium transporter; PFAM: ammonium transporter; SPTR: C1XS64 Ammonium transporter; TIGRFAM: ammonium transporter; PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter YP_003683471.1 COGs: COG1420 Transcriptional regulator of heat shock gene; InterPro IPR011991:IPR002571; KEGG: tth:TTC1948 heat-inducible transcription repressor HrcA; SPTR: C1XS63 Heat-inducible transcription repressor HrcA; PFAM: HrcA protein C terminal domain; TIGRFAM: heat shock gene repressor HrcA YP_003683472.1 COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR008949:IPR000092; KEGG: ttj:TTHA0013 geranylgeranyl diphosphate synthetase; PFAM: Polyprenyl synthetase; SPTR: C1XS62 Geranylgeranyl pyrophosphate synthase; PFAM: Polyprenyl synthetase YP_003683473.1 COGs: COG1842 Phage shock protein A (IM30) suppresses sigma54-dependent transcription; InterPro IPR007157; KEGG: ttj:TTHA0008 phage shock protein A; PFAM: PspA/IM30 family protein; SPTR: C1XS61 Phage shock protein A, PspA; PFAM: PspA/IM30 family YP_003683474.1 KEGG: sme:SMa0759 hypothetical protein; SPTR: C1XS60 Putative uncharacterized protein YP_003683475.1 KEGG: ttj:TTHA0007 hypothetical protein; SPTR: C1XS59 Putative uncharacterized protein YP_003683476.1 InterPro IPR012337:IPR002559; KEGG: cau:Caur_2446 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: C1XPT2 Transposase family protein; PFAM: Transposase DDE domain YP_003683477.1 COGs: COG1154 Deoxyxylulose-5-phosphate synthase; InterProIPR009014:IPR005475:IPR005476:IPR005477:IPR 015941:IPR020826; KEGG: tth:TTC1614 1-deoxy-D-xylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain protein; SPTR: C1XS57 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase YP_003683478.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001279; KEGG: ttj:TTHA0005 metallo-beta-lactamase family protein; SMART: beta-lactamase domain protein; SPTR: C1XS56 Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily YP_003683479.1 KEGG: rca:Rcas_0815 hypothetical protein; SPTR: C1XS55 Putative uncharacterized protein YP_003683480.1 KEGG: amr:AM1_2901 hypothetical protein; SPTR: C1XS54 Putative uncharacterized protein YP_003683481.1 COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding; InterPro IPR003743; KEGG: ttj:TTHA1624 hypothetical protein; PFAM: protein of unknown function DUF164; SPTR: C1XS53 Zn-ribbon protein, possibly nucleic acid-binding; PFAM: Putative zinc ribbon domain YP_003683482.1 InterPro IPR002482:IPR018392:IPR018711:IPR017441; KEGG: dge:Dgeo_1694 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; Protein of unknown function DUF2233, periplasmic; SMART: Peptidoglycan-binding LysM; SPTR: C1XS52 Predicted periplasmic protein (DUF2233); PFAM: Predicted periplasmic protein (DUF2233); LysM domain YP_003683483.1 KEGG: glucosyl/glucuronosyl transferases; SPTR: C1XS51 Putative uncharacterized protein YP_003683484.1 COGs: COG1957 Inosine-uridine nucleoside N-ribohydrolase; InterPro IPR001910:IPR015910; KEGG: dge:Dgeo_1652 purine nucleosidase; PFAM: Inosine/uridine-preferring nucleoside hydrolase; PRIAM: Ribosylpyrimidine nucleosidase; SPTR: C1XS50 Inosine-uridine nucleoside N-ribohydrolase; PFAM: Inosine-uridine preferring nucleoside hydrolase YP_003683485.1 COGs: COG1770 Protease II; InterPro IPR002470:IPR004106:IPR001375; KEGG: aac:Aaci_0836 oligopeptidase B; PFAM: peptidase S9A prolyl oligopeptidase domain protein beta-propeller; peptidase S9 prolyl oligopeptidase active site domain protein; PRIAM: Oligopeptidase B; SPTR: C1XS49 Oligopeptidase B; PFAM: Prolyl oligopeptidase, N-terminal beta-propeller domain; Prolyl oligopeptidase family; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003683486.1 InterPro IPR008538; KEGG: cyt:cce_0352 hypothetical protein; PFAM: protein of unknown function DUF820; SPTR: C1XS48 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF820) YP_003683487.1 COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterProIPR009010:IPR006963:IPR006656:IPR006657:IPR 006655; KEGG: ttj:TTHA0200 molybdopterin oxidoreductase; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; SPTR: C1XS47 Anaerobic dehydrogenase, typically selenocysteine-containing; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain YP_003683488.1 KEGG: cyn:Cyan7425_4772 hypothetical protein; SPTR: C1XS46 Putative uncharacterized protein; PFAM: Plasmid pRiA4b ORF-3-like protein YP_003683489.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR016196:IPR011701; KEGG: ttj:TTHA0064 hypothetical protein; PFAM: major facilitator superfamily MFS_1; SPTR: C1XS45 Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily YP_003683490.1 COGs: COG4187 Arginine degradation protein (predicted deacylase); InterPro IPR002933:IPR011650:IPR012166; KEGG: oan:Oant_3500 peptidase M20; PFAM: peptidase M20; peptidase dimerisation domain protein; SPTR: C1XS44 Arginine degradation protein (Predicted deacylase); PFAM: Peptidase family M20/M25/M40 YP_003683491.1 COGs: COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; InterPro IPR005259; KEGG: tth:TTC1942 primosomal protein N'; SPTR: C1XS43 Primosomal protein N'; TIGRFAM: primosomal protein N'; TIGRFAM: primosomal protein N' YP_003683492.1 COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR013022:IPR012307; KEGG: rle:pRL80084 putative epimerase/isomerase; PFAM: Xylose isomerase domain protein TIM barrel; SPTR: C1XS42 Sugar phosphate isomerase/epimerase; PFAM: Xylose isomerase-like TIM barrel YP_003683493.1 COGs: COG1129 ABC-type sugar transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: acr:Acry_1854 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XS41 Monosaccharide ABC transporter ATP-binding protein, CUT2 family; PFAM: ABC transporter YP_003683494.1 COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: ctc:CTC00906 ribose transport system permease protein RbsC; PFAM: inner-membrane translocator; SPTR: C1XS40 Monosaccharide ABC transporter membrane protein, CUT2 family; PFAM: Branched-chain amino acid transport system / permease component YP_003683495.1 COGs: COG1879 ABC-type sugar transport system periplasmic component; InterPro IPR001761; KEGG: str:Sterm_3044 periplasmic binding protein/LacI transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; SPTR: C1XS39 Monosaccharide ABC transporter substrate-binding protein, CUT2 family; PFAM: family YP_003683496.1 COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761:IPR010982; KEGG: smd:Smed_4247 alanine racemase; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; SPTR: C1XS38 Transcriptional regulator, LacI family; PFAM: Bacterial regulatory proteins, lacI family; family YP_003683497.1 COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR001544:IPR005785; KEGG: tth:TTC1870 branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; SPTR: C1XS37 Branched chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: Aminotransferase class IV; TIGRFAM: branched-chain amino acid aminotransferase, group I YP_003683498.1 COGs: COG1327 transcriptional regulator protein consists of a Zn-ribbon and ATP-cone domains; InterPro IPR005144:IPR003796; KEGG: ttj:TTHA0134 transcriptional regulator NrdR; PFAM: ATP-cone domain protein; SPTR: C1XS36 Transcriptional regulator NrdR; PFAM: ATP cone domain; TIGRFAM: transcriptional regulator NrdR YP_003683499.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR016040:IPR002198:IPR002347; KEGG: ttj:TTHA0133 short chain dehydrogenase/reductase family oxidoreductase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: C1XS35 Putative uncharacterized protein; PFAM: short chain dehydrogenase YP_003683500.1 InterPro IPR013217; KEGG: tcu:Tcur_2788 methyltransferase type 11; PFAM: Methyltransferase type 12; SPTR: C1XS34 Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain YP_003683501.1 KEGG: ddr:Deide_14940 hypothetical protein; SPTR: C1XS33 Putative uncharacterized protein YP_003683502.1 InterPro IPR000182:IPR016181; KEGG: smt:Smal_0855 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: C1XS32 Acetyltransferase (GNAT) family protein; PFAM: Acetyltransferase (GNAT) family YP_003683503.1 InterPro IPR000182:IPR016181; KEGG: dge:Dgeo_0369 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: C1XS31 Acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_003683504.1 KEGG: rrs:RoseRS_0477 hypothetical protein; SPTR: C1XS30 Putative uncharacterized protein YP_003683505.1 InterPro IPR004843; KEGG: ami:Amir_0475 metallophosphoesterase; PFAM: metallophosphoesterase; SPTR: C1XS27 Calcineurin-like phosphoesterase; PFAM: Calcineurin-like phosphoesterase YP_003683506.1 InterPro IPR005079; KEGG: chl:Chy400_2318 peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; PFAM: peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; SPTR: C1XS26 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; PFAM: Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase YP_003683507.1 COGs: COG2110 phosphatase homologous to the C-terminal domain of histone macroH2A1; InterPro IPR002589; KEGG: ttj:TTHA0132 hypothetical protein; PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; SPTR: C1XS25 Predicted phosphatase similar to C-terminal domain of histone macro H2A1; PFAM: Macro domain YP_003683508.1 COGs: COG1195 Recombinational DNA repair ATPase (RecF pathway); InterPro IPR003395:IPR001238:IPR018078; KEGG: ttj:TTHA0264 recombination protein F; PFAM: SMC domain protein; SPTR: C1XS24 DNA replication and repair protein recF; TIGRFAM: DNA replication and repair protein RecF; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: recF protein YP_003683509.1 InterPro IPR002781; KEGG: sma:SAV_1602 integral membrane protein; PFAM: protein of unknown function DUF81; SPTR: C1XS23 Predicted permease; PFAM: Sulfite exporter TauE/SafE YP_003683510.1 InterPro IPR007922; KEGG: tth:TTC1720 hypothetical protein; PFAM: protein of unknown function DUF721; SPTR: C1XS22 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF721) YP_003683511.1 COGs: COG1451 metal-dependent hydrolase; InterPro IPR002725; KEGG: hoh:Hoch_2794 protein of unknown function DUF45; PFAM: protein of unknown function DUF45; SPTR: C1XS21 Predicted metal-dependent hydrolase, COG1451; PFAM: Protein of unknown function DUF45 YP_003683512.1 InterPro IPR009061:IPR000551:IPR010093; KEGG: sat:SYN_01853 MerR family regulatory protein; PFAM: regulatory protein MerR; SPTR: C1XS20 DNA-binding protein, excisionase family; TIGRFAM: DNA binding domain protein, excisionase family; TIGRFAM: DNA binding domain, excisionase family YP_003683513.1 InterPro IPR020683:IPR002110; KEGG: bai:BAA_4614 ankyrin repeat domain protein; PFAM: Ankyrin; SMART: Ankyrin; SPTR: C1XS19 Ankyrin repeat-containing protein; PFAM: Ankyrin repeat YP_003683514.1 KEGG: mxa:MXAN_6319 phospholipase D family protein; SPTR: C1XS18 Putative uncharacterized protein YP_003683515.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR016040:IPR002198:IPR004360:IPR002347; KEGG: rxy:Rxyl_2616 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: C1XS17 Putative uncharacterized protein; PFAM: short chain dehydrogenase; Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_003683516.1 COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); InterPro IPR003699; KEGG: rxy:Rxyl_2617 putative S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; SPTR: C1XS16 S-adenosylmethionine--tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_003683517.1 KEGG: tth:TT_P0094 hypothetical protein; SPTR: C1XS14 Putative uncharacterized protein YP_003683518.1 KEGG: hau:Haur_2778 hypothetical protein; SPTR: C1XS13 Putative uncharacterized protein; PFAM: Limonene-1,2-epoxide hydrolase catalytic domain YP_003683519.1 COGs: COG4585 Signal transduction histidine kinase; InterProIPR003594:IPR003018:IPR011712:IPR005467:IPR 004358; KEGG: bcl:ABC3141 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase dimerisation and phosphoacceptor region; PRIAM: Histidine kinase; SMART: ATP-binding region ATPase domain protein; GAF domain protein; SPTR: C1XS12 Histidine kinase with GAF domain; PFAM: Histidine kinase; GAF domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_003683520.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterProIPR000792:IPR001789:IPR011991:IPR011006:IPR 016032; KEGG: sro:Sros_0508 response regulator receiver protein; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: C1XS11 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_003683521.1 COGs: COG1098 RNA binding protein (contains ribosomal protein S1 domain); InterPro IPR003029:IPR012340:IPR016027; KEGG: ttj:TTHA1748 hypothetical protein; PFAM: RNA binding S1 domain protein; SPTR: C1XS10 Predicted RNA-binding protein with ribosomal protein S1 domain; PFAM: S1 RNA binding domain YP_003683522.1 COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR013786:IPR006091:IPR006089:IPR009100:IPR 006090:IPR013764:IPR006092:IPR009075; KEGG: tth:TTC1575 acyl-CoA dehydrogenase, short-chain specific; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: C1XS09 Acyl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain YP_003683523.1 COGs: COG3220 conserved hypothetical protein; InterPro IPR007801; KEGG: cbe:Cbei_3491 hypothetical protein; PFAM: protein of unknown function DUF692; SPTR: C1XS08 Uncharacterized conserved protein; PFAM: Protein of unknown function (DUF692) YP_003683524.1 COGs: COG1171 Threonine dehydratase; InterPro IPR001926:IPR002912:IPR005789; KEGG: cag:Cagg_0043 threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; amino acid-binding ACT domain protein; SPTR: C1XS07 L-threonine ammonia-lyase; TIGRFAM: threonine dehydratase; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine dehydratase, medium form YP_003683525.1 COGs: COG0303 Molybdopterin biosynthesis enzyme; InterPro IPR005110:IPR001453:IPR005111:IPR020817; KEGG: ttj:TTHA0110 molybdopterin biosynthesis MoeA; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; SMART: molybdopterin binding domain; SPTR: C1XS06 Molybdopterin molybdochelatase; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: Probable molybdopterin binding domain; MoeA N-terminal region (domain I and II); MoeA C-terminal region (domain IV); TIGRFAM: molybdenum cofactor synthesis domain YP_003683526.1 COGs: COG0040 ATP phosphoribosyltransferase; InterPro IPR013820; KEGG: ttj:TTHA0128 ATP phosphoribosyltransferase catalytic subunit; PFAM: ATP phosphoribosyltransferase catalytic region; PRIAM: ATP phosphoribosyltransferase; SPTR: C1XS05 ATP phosphoribosyltransferase catalytic subunit; TIGRFAM: ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase YP_003683527.1 COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395:IPR020471; KEGG: ddr:Deide_03620 putative oxidoreductase; PFAM: aldo/keto reductase; SPTR: C1XS04 Predicted oxidoreductase similar to aryl-alcohol dehydrogenase; PFAM: Aldo/keto reductase family YP_003683528.1 KEGG: gur:Gura_3349 hypothetical protein; SPTR: C1XS03 Putative uncharacterized protein YP_003683529.1 COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: dge:Dgeo_2234 tRNA (guanosine-2'-O-)-methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU); PRIAM: tRNA guanosine-2'-O-methyltransferase; SPTR: C1XS02 rRNA methylase; PFAM: SpoU rRNA Methylase family; SpoU, rRNA methylase, C-terminal YP_003683530.1 COGs: COG2720 Uncharacterized vancomycin resistance protein; InterPro IPR007391; KEGG: ttj:TTHA0072 hypothetical protein; PFAM: VanW family protein; SPTR: C1XS01 Uncharacterized vancomycin resistance protein; PFAM: VanW like protein YP_003683531.1 COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR011650:IPR002933:IPR010182:IPR001261; KEGG: rxy:Rxyl_2475 acetylornithine deacetylase; PFAM: peptidase M20; peptidase dimerisation domain protein; PRIAM: Succinyl-diaminopimelate desuccinylase; SPTR: C1XS00 Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase YP_003683532.1 COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914:IPR005829; KEGG: azc:AZC_2698 ABC transporter substrate binding protein; PFAM: extracellular solute-binding protein family 5; SPTR: C1XRZ9 ABC-type dipeptide transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_003683533.1 COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: mes:Meso_1312 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XRZ8 ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_003683534.1 COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: sti:Sthe_1511 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XRZ7 ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_003683535.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR016040:IPR002198:IPR002347; KEGG: rxy:Rxyl_2474 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: C1XRZ6 Putative uncharacterized protein; PFAM: short chain dehydrogenase YP_003683536.1 COGs: COG3635 phosphoglycerate mutase AP superfamily; InterPro IPR019304:IPR004456:IPR017850:IPR006124; KEGG: tth:TTC1888 cofactor-independent phosphoglycerate mutase; PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; metalloenzyme domain protein; PRIAM: Phosphoglycerate mutase; SPTR: C1XRZ5 Phosphoglycerate mutase; PFAM: Metalloenzyme superfamily; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; TIGRFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form YP_003683537.1 COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: tro:trd_A0835 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: C1XRZ4 Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain YP_003683538.1 COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182:IPR016181; KEGG: tte:TTE1540 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: C1XRZ3 Acetyltransferase, ribosomal protein N-acetylase; PFAM: Acetyltransferase (GNAT) family YP_003683539.1 COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209:IPR003137:IPR010435; KEGG: dge:Dgeo_2222 peptidase S8 and S53, subtilisin, kexin, sedolisin; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; protein of unknown function DUF1034; SPTR: C1XRZ2 Subtilisin-like serine protease; PFAM: PA domain; Fn3-like domain (DUF1034); Subtilase family YP_003683540.1 COGs: COG3293 Transposase and inactivated derivatives; KEGG: cyn:Cyan7425_0011 transposase IS4 family protein; SPTR: C1XRY7 Transposase; PFAM: Transposase DDE domain YP_003683541.1 InterPro IPR012337:IPR009057:IPR001584; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XRY6 Integrase family protein; PFAM: Integrase core domain YP_003683542.1 COGs: COG0442 Prolyl-tRNA synthetase; InterProIPR002316:IPR016061:IPR004499:IPR002314:IPR 004154:IPR017449:IPR006195; KEGG: tth:TTC1889 prolyl-tRNA synthetase; PFAM: Prolyl-tRNA synthetase, class II-like; Anticodon-binding domain protein; tRNA synthetase class II (G H P and S); SPTR: C1XRY5 Prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: Anticodon binding domain; Prolyl-tRNA synthetase, C-terminal; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: prolyl-tRNA synthetase, family I YP_003683543.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR016040:IPR000683:IPR004104; KEGG: rrs:RoseRS_3898 oxidoreductase domain-containing protein; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: C1XRY4 Predicted dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold YP_003683544.1 COGs: COG0177 EndoIII-related endonuclease; InterProIPR011257:IPR003265:IPR003651:IPR005759:IPR 004035:IPR004036; KEGG: ttj:TTHA0112 endonuclease III; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD family protein; iron-sulfur cluster loop; SPTR: C1XRY3 Endonuclease III; DNA-(Apurinic or apyrimidinic site) lyase; TIGRFAM: endonuclease III; PFAM: HhH-GPD superfamily base excision DNA repair protein; Iron-sulfur binding domain of endonuclease III; TIGRFAM: endonuclease III YP_003683545.1 InterPro IPR011701:IPR016196; KEGG: ttj:TTHA0111 hypothetical protein; PFAM: major facilitator superfamily MFS_1; SPTR: C1XRY2 Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily YP_003683546.1 KEGG: reu:Reut_A2344 hypothetical protein; SPTR: C1XRY1 Putative uncharacterized protein YP_003683547.1 COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR020845; KEGG: rxy:Rxyl_2358 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: C1XRY0 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; PFAM: AMP-binding enzyme YP_003683548.1 COGs: COG0824 thioesterase; InterPro IPR006683; KEGG: ddr:Deide_15530 putative thioesterase superfamily protein; PFAM: thioesterase superfamily protein; SPTR: C1XRX9 Predicted thioesterase; PFAM: Thioesterase superfamily; TIGRFAM: conserved hypothetical protein TIGR00051 YP_003683549.1 COGs: COG0262 Dihydrofolate reductase; InterPro IPR001796:IPR012259:IPR017925; KEGG: tau:Tola_2373 dihydrofolate reductase; PFAM: dihydrofolate reductase region; PRIAM: Dihydrofolate reductase; SPTR: C1XRX8 Dihydrofolate reductase; PFAM: Dihydrofolate reductase YP_003683550.1 COGs: COG0207 Thymidylate synthase; InterPro IPR000398; KEGG: mdi:METDI3419 thymidylate synthetase; PFAM: thymidylate synthase; PRIAM: Thymidylate synthase; SPTR: C1XRX7 Thymidylate synthase; TIGRFAM: thymidylate synthase; PFAM: Thymidylate synthase; TIGRFAM: thymidylate synthase YP_003683551.1 InterPro IPR001119; KEGG: dge:Dgeo_1597 S-layer-like protein region; PFAM: S-layer domain protein; SPTR: C1XRX5 Putative S-layer protein; PFAM: S-layer homology domain YP_003683552.1 COGs: COG1950 membrane protein; InterPro IPR007165; KEGG: ttj:TTHA0348 hypothetical protein; PFAM: membrane protein of unknown function; SPTR: C1XRX4 Predicted membrane protein, COG1950; PFAM: Membrane protein of unknown function YP_003683553.1 COGs: COG2905 signal-transduction protein containing cAMP-binding and CBS domains; InterPro IPR000644:IPR013785; KEGG: ttj:TTHA0349 CBS domain-containing protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; SPTR: C1XRX3 Predicted signal-transduction protein containing cAMP-binding and CBS domains; PFAM: CBS domain YP_003683554.1 InterPro IPR006015:IPR014729:IPR006016; KEGG: tth:TTC1633 hypothetical protein; PFAM: UspA domain protein; SPTR: C1XRX2 Universal stress protein UspA-like protein; PFAM: Universal stress protein family YP_003683555.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701:IPR005829:IPR016196; KEGG: ttj:TTHA0351 efflux protein (fosmidomycin resistance); PFAM: major facilitator superfamily MFS_1; SPTR: C1XRX1 Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily YP_003683556.1 InterPro IPR000297; KEGG: tth:TTC1631 hypothetical protein; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: C1XRX0 Parvulin-like peptidyl-prolyl isomerase; PFAM: PPIC-type PPIASE domain YP_003683557.1 KEGG: tth:TTC1827 hypothetical protein; SPTR: C1XRW9 Putative uncharacterized protein YP_003683558.1 KEGG: sgr:SGR_6967 hypothetical protein; SPTR: C1XRW8 Putative uncharacterized protein YP_003683559.1 COGs: COG0449 Glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains; InterPro IPR017932:IPR000583:IPR001347:IPR005855; KEGG: tth:TTC1533 glucosamine--fructose-6-phosphate aminotransferase; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); SPTR: C1XRW7 Glutamine--fructose-6-phosphate transaminase; TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: SIS domain; Glutamine amidotransferases class-II; TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase (isomerizing) YP_003683560.1 InterPro IPR001119; KEGG: tth:TTC1532 S-layer protein; PFAM: S-layer domain protein; SPTR: C1XRW6 Putative S-layer protein; PFAM: S-layer homology domain YP_003683561.1 InterPro IPR006442; KEGG: pna:Pnap_3716 prevent-host-death family protein; SPTR: C1XRW5 Prevent-host-death family protein; TIGRFAM: prevent-host-death family protein; PFAM: Phd_YefM; TIGRFAM: prevent-host-death family protein YP_003683562.1 COGs: COG3744 conserved hypothetical protein; KEGG: ttj:TTHA0487 hypothetical protein; SPTR: C1XRW4 Uncharacterized conserved protein YP_003683563.1 COGs: COG0556 Helicase subunit of the DNA excision repair complex; InterProIPR004807:IPR009055:IPR001650:IPR014021:IPR 001943:IPR006935:IPR014001; KEGG: ttj:TTHA1892 excinuclease ABC subunit B; PFAM: helicase domain protein; UvrB/UvrC protein; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase domain protein; SPTR: C1XRW3 UvrABC system protein B; TIGRFAM: excinuclease ABC, B subunit; PFAM: Helicase conserved C-terminal domain; UvrB/uvrC motif; Type III restriction enzyme, res subunit; Ultra-violet resistance protein B; TIGRFAM: excinuclease ABC, B subunit YP_003683564.1 InterPro IPR013229; KEGG: tth:TTC1407 S-layer protein; PFAM: PEGA domain protein; SPTR: C1XRW2 PEGA domain-containing protein; PFAM: PEGA domain YP_003683565.1 KEGG: GJ14521 gene product from transcript GJ14521-RA; SPTR: C1XIJ0 Putative uncharacterized protein YP_003683566.1 KEGG: hypothetical protein; SPTR: C1XRW0 Putative uncharacterized protein YP_003683567.1 InterPro IPR004167; KEGG: tth:TTC1530 hypothetical protein; PFAM: E3 binding domain protein; SPTR: C1XRV9 E3 binding domain protein; PFAM: e3 binding domain YP_003683568.1 COGs: COG2309 Leucyl aminopeptidase (aminopeptidase T); InterPro IPR000787; KEGG: tth:TTC1529 aminopeptidase; PFAM: peptidase M29 aminopeptidase II; SPTR: C1XRV8 Leucyl aminopeptidase (Aminopeptidase T); PFAM: Thermophilic metalloprotease (M29) YP_003683569.1 COGs: COG1064 Zn-dependent alcohol dehydrogenase; InterPro IPR016040:IPR011032:IPR013154:IPR014187; KEGG: tro:trd_0582 NAD-dependent alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES domain protein; SPTR: C1XRV7 Zinc-binding alcohol dehydrogenase family protein; TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase GroES-like domain; TIGRFAM: zinc-binding alcohol dehydrogenase family protein YP_003683570.1 COGs: COG0539 Ribosomal protein S1; InterPro IPR003029:IPR000110:IPR012340:IPR016027; KEGG: ttj:TTHA0162 30S ribosomal protein S1; PFAM: RNA binding S1 domain protein; SPTR: C1XRV6 SSU ribosomal protein S1P; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1 YP_003683571.1 InterPro IPR012337:IPR009057:IPR001584; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XRV5 Integrase family protein; PFAM: Integrase core domain YP_003683572.1 COGs: COG0517 FOG: CBS domain; InterPro IPR000644:IPR018486; KEGG: ttj:TTHA1473 hypothetical protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; SPTR: C1XRV4 CBS domain-containing protein; PFAM: CBS domain YP_003683573.1 COGs: COG0475 Kef-type K+ transport systems membrane components; InterPro IPR006153; KEGG: ttj:TTHA1472 Na(+)/H(+) antiporter; PFAM: sodium/hydrogen exchanger; SPTR: C1XRV3 Kef-type K+ transport system, membrane component; PFAM: Sodium/hydrogen exchanger family YP_003683574.1 KEGG: tmz:Tmz1t_3805 transposase IS4 family protein; SPTR: C1XRV2 Putative uncharacterized protein; PFAM: Transposase DDE domain YP_003683575.1 COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR002482:IPR018392:IPR000064; KEGG: tth:TTC1719 soluble lytic murein transglycosylase and related regulatory proteins; PFAM: NLP/P60 protein; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: C1XRV0 Cell wall-associated hydrolase, invasion-associated protein; PFAM: NlpC/P60 family; LysM domain YP_003683576.1 COGs: COG0283 Cytidylate kinase; InterPro IPR011994:IPR003136; KEGG: ttj:TTHA0458 cytidylate kinase; PFAM: cytidylate kinase region; SPTR: C1XRU9 Cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: Cytidylate kinase; TIGRFAM: cytidylate kinase YP_003683577.1 InterPro IPR012337:IPR002559; KEGG: cau:Caur_2446 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: C1XPT2 Transposase family protein; PFAM: Transposase DDE domain YP_003683578.1 COGs: COG0128 5-enolpyruvylshikimate-3-phosphate synthase; InterPro IPR013792:IPR001986:IPR016228:IPR006264; KEGG: tth:TTC0088 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); PRIAM: 3-phosphoshikimate 1-carboxyvinyltransferase; SPTR: C1XRU7 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase YP_003683579.1 COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR003156:IPR001667; KEGG: tth:TTC1886 exopolyphosphatase family protein; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; SPTR: C1XRU6 Exopolyphosphatase-like enzyme; PFAM: DHHA1 domain; DHH family YP_003683580.1 COGs: COG0105 Nucleoside diphosphate kinase; InterPro IPR001564; KEGG: ttj:TTHA0188 nucleoside diphosphate kinase; PFAM: nucleoside diphosphate kinase; PRIAM: Nucleoside-diphosphate kinase; SMART: nucleoside diphosphate kinase; SPTR: C1XRU5 Nucleoside diphosphate kinase; PFAM: Nucleoside diphosphate kinase YP_003683581.1 COGs: COG0515 Serine/threonine protein kinase; InterProIPR011009:IPR011047:IPR020635:IPR002290:IPR 018391:IPR000719:IPR017442:IPR002372:IPR017441:IPR008266; KEGG: ttj:TTHA0138 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; Pyrrolo-quinoline quinone; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, subgroup, catalytic domain; Pyrrolo-quinoline quinone beta-propeller repeat; SPTR: C1XRU4 Serine/threonine protein kinase; PFAM: Protein kinase domain; PQQ enzyme repeat YP_003683582.1 COGs: COG2217 Cation transport ATPase; InterProIPR006403:IPR017969:IPR001757:IPR018303:IPR 005834:IPR001877:IPR006121:IPR008250:IPR006122:IPR006416; KEGG: dge:Dgeo_2553 heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; SPTR: C1XRU3 Copper/silver-translocating P-type ATPase; TIGRFAM: copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; copper ion binding protein; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_003683583.1 COGs: COG1937 conserved hypothetical protein; InterPro IPR003735; KEGG: ttj:TTHA1719 copper homeostasis operon regulatory protein; PFAM: protein of unknown function DUF156; SPTR: C1XRU2 Uncharacterized conserved protein; PFAM: Uncharacterised BCR, COG1937 YP_003683584.1 InterPro IPR006121:IPR017969; KEGG: ttj:TTHA1718 heavy metal binding protein; PFAM: Heavy metal transport/detoxification protein; SPTR: C1XRU1 Copper chaperone; PFAM: Heavy-metal-associated domain YP_003683585.1 COGs: COG3544 conserved hypothetical protein; InterPro IPR005183; KEGG: dge:Dgeo_0086 hypothetical protein; PFAM: protein of unknown function DUF305; SPTR: C1XRU0 Uncharacterized conserved protein; PFAM: Domain of unknown function (DUF305) YP_003683586.1 COGs: COG2217 Cation transport ATPase; InterProIPR006403:IPR001757:IPR001756:IPR005834:IPR 018303:IPR006121:IPR008250:IPR006416; KEGG: dge:Dgeo_2575 heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; SPTR: C1XRT9 Copper/silver-translocating P-type ATPase; TIGRFAM: copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase YP_003683587.1 KEGG: dge:Dgeo_2591 hypothetical protein; SPTR: C1XRT8 Putative uncharacterized protein YP_003683588.1 KEGG: ddr:Deide_1p01690 hypothetical protein; SPTR: C1XRT7 Putative uncharacterized protein YP_003683589.1 KEGG: ttj:TTHA1731 hypothetical protein; SPTR: C1XRT6 Putative uncharacterized protein YP_003683590.1 COGs: COG3462 membrane protein; InterPro IPR018649; KEGG: ttj:TTHA1734 hypothetical protein; PFAM: Protein of unknown function DUF2078, membrane; SPTR: C1XRT5 Predicted membrane protein (DUF2078); PFAM: Predicted membrane protein (DUF2078) YP_003683591.1 COGs: COG3439 conserved hypothetical protein; InterPro IPR005180:IPR016796; KEGG: ttj:TTHA1732 hypothetical protein; PFAM: protein of unknown function DUF302; SPTR: C1XRT3 Uncharacterized conserved protein; PFAM: Domain of unknown function DUF302 YP_003683592.1 COGs: COG2132 Putative multicopper oxidase; InterProIPR011706:IPR002355:IPR008972:IPR011707:IPR 001117; KEGG: tth:TTC1370 laccase; PFAM: multicopper oxidase type 3; multicopper oxidase type 2; multicopper oxidase type 1; SPTR: C1XRT2 Predicted multicopper oxidase; PFAM: Multicopper oxidase; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003683593.1 COGs: COG3019 metal-binding protein; InterPro IPR017909:IPR006311:IPR007332; KEGG: cti:RALTA_A1255 conserved hypothetical protein, DUF411; putative exported protein; PFAM: protein of unknown function DUF411; SPTR: C1XRT1 Predicted metal-binding protein; PFAM: Protein of unknown function, DUF YP_003683594.1 COGs: COG0642 Signal transduction histidine kinase; InterProIPR009082:IPR003660:IPR003594:IPR003661:IPR 005467:IPR004358; KEGG: ttj:TTHA1723 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PRIAM: Histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: C1XRT0 Sensor protein; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003683595.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR011006:IPR001789:IPR001867; KEGG: ttj:TTHA1722 putative response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: C1XRS9 Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_003683596.1 KEGG: hma:rrnAC2485 hypothetical protein; SPTR: C1XRS8 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3105) YP_003683597.1 KEGG: pmx:PERMA_0848 putative lipoprotein; SPTR: C1XRS6 Putative uncharacterized protein YP_003683598.1 COGs: COG1814 Uncharacterized membrane protein; InterPro IPR008217; KEGG: dge:Dgeo_3006 CCC1-related iron/manganese transporter component; PFAM: protein of unknown function DUF125 transmembrane; SPTR: C1XRS5 Uncharacterized membrane protein; PFAM: VIT family YP_003683599.1 InterPro IPR000620; KEGG: ttj:TTHA0012 integral membrane protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: C1XRS4 DMT(Drug/metabolite transporter) superfamily permease; PFAM: EamA-like transporter family YP_003683600.1 InterPro IPR012336:IPR002109:IPR012335; KEGG: tth:TTC1680 hypothetical protein; PFAM: glutaredoxin; SPTR: C1XRS3 Glutaredoxin; PFAM: Glutaredoxin YP_003683601.1 COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterProIPR000160:IPR013105:IPR019734:IPR013026:IPR 001440:IPR011990:IPR011717; KEGG: cts:Ctha_2057 diguanylate cyclase and serine/threonine protein kinase with TPR repeats; PFAM: GGDEF domain containing protein; Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: GGDEF domain containing protein; Tetratricopeptide repeat; SPTR: C1XRS2 Diguanylate cyclase (GGDEF) domain-containing protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; Tetratricopeptide repeat; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_003683602.1 COGs: COG1485 ATPase; InterPro IPR005654; KEGG: tth:TTC1657 putative ATP/GTP-binding integral membrane protein; PFAM: AFG1-family ATPase; SPTR: C1XRS1 Predicted ATPase, COG1485; PFAM: AFG1-like ATPase YP_003683603.1 COGs: COG1015 Phosphopentomutase; InterPro IPR017850:IPR006124:IPR010045:IPR013553; KEGG: tth:TTC1659 phosphopentomutase; PFAM: Phosphopentomutase domain protein; metalloenzyme domain protein; PRIAM: Phosphopentomutase; SPTR: C1XRR9 Phosphopentomutase; TIGRFAM: phosphopentomutase; PFAM: Metalloenzyme superfamily; TIGRFAM: phosphopentomutase YP_003683604.1 KEGG: gau:GAU_3400 hypothetical protein; SPTR: C1XRR8 Putative uncharacterized protein YP_003683605.1 InterPro IPR015018; KEGG: hau:Haur_2209 hypothetical protein; PFAM: Domain of unknown function DUF1905; SPTR: C1XRR7 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF1905) YP_003683606.1 COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013149:IPR016040:IPR011032:IPR013154; KEGG: cth:Cthe_0388 alcohol dehydrogenase GroES-like protein; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; SPTR: C1XRR6 Theronine dehydrogenase-like Zn-dependent dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase YP_003683607.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198:IPR016040:IPR002347; KEGG: dge:Dgeo_2865 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: C1XRR5 Putative uncharacterized protein; PFAM: short chain dehydrogenase YP_003683608.1 COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterProIPR013149:IPR016040:IPR002328:IPR011032:IPR 013154; KEGG: ttr:Tter_2269 alcohol dehydrogenase GroES domain protein; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; SPTR: C1XRR4 Theronine dehydrogenase-like Zn-dependent dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase YP_003683609.1 COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: csa:Csal_0635 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XRR3 Mannitol ABC transporter membrane protein; sorbitol ABC transporter membrane protein; PFAM: Binding-protein-dependent transport system inner membrane component YP_003683610.1 COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: ddr:Deide_3p02100 putative sugar ABC transporter, permease component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XRR2 Sorbitol ABC transporter membrane protein; mannitol ABC transporter membrane protein; PFAM: Binding-protein-dependent transport system inner membrane component YP_003683611.1 COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: dge:Dgeo_2870 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: C1XRR1 Mannitol-binding protein; sorbitol-binding protein; PFAM: Bacterial extracellular solute-binding protein YP_003683612.1 COGs: COG1609 Transcriptional regulators; InterPro IPR010982:IPR000843:IPR001761; KEGG: dge:Dgeo_2871 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; SPTR: C1XRR0 Transcriptional regulator, LacI family; PFAM: Bacterial regulatory proteins, lacI family; family YP_003683613.1 InterPro IPR011701:IPR016196; KEGG: cpi:Cpin_0923 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: C1XRQ9 Major Facilitator Superfamily transporter; PFAM: Major Facilitator Superfamily YP_003683614.1 COGs: COG1624 conserved hypothetical protein; InterPro IPR003390:IPR014046; KEGG: tth:TTC1660 hypothetical protein; PFAM: protein of unknown function DUF147; SPTR: C1XRQ8 Putative uncharacterized protein; PFAM: DisA bacterial checkpoint controller nucleotide-binding; TIGRFAM: conserved hypothetical protein TIGR00159 YP_003683615.1 InterPro IPR012505; KEGG: ttj:TTHA0322 hypothetical protein; PFAM: YbbR family protein; SPTR: C1XRQ7 YbbR-like protein; PFAM: YbbR-like protein YP_003683616.1 COGs: COG0242 N-formylmethionyl-tRNA deformylase; InterPro IPR000181; KEGG: ttj:TTHA0321 polypeptide deformylase; PFAM: formylmethionine deformylase; PRIAM: Peptide deformylase; SPTR: C1XRQ6 Peptide deformylase; TIGRFAM: peptide deformylase; PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase YP_003683617.1 COGs: COG0223 Methionyl-tRNA formyltransferase; InterPro IPR002376:IPR011034:IPR005793:IPR005794; KEGG: ttj:TTHA0320 methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; SPTR: C1XRQ5 Methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: Formyl transferase; Formyl transferase, C-terminal domain; TIGRFAM: methionyl-tRNA formyltransferase YP_003683618.1 COGs: COG1252 NADH dehydrogenase FAD-containing subunit; InterPro IPR013027; KEGG: cag:Cagg_3437 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: C1XRQ4 NADH dehydrogenase, FAD-containing subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_003683619.1 InterPro IPR001455; KEGG: ace:Acel_0524 SirA family protein; PFAM: SirA family protein; SPTR: C1XRQ3 Predicted redox protein, regulator of disulfide bond formation; PFAM: SirA-like protein YP_003683620.1 COGs: COG2210 conserved hypothetical protein; KEGG: min:Minf_2155 peroxiredoxin family protein; SPTR: C1XRQ2 Uncharacterized conserved protein; PFAM: DsrE/DsrF-like family YP_003683621.1 COGs: COG4635 Flavodoxin; InterPro IPR008254; KEGG: mem:Memar_1824 flavodoxin; PFAM: flavodoxin/nitric oxide synthase; SPTR: C1XRQ1 Flavodoxin; PFAM: Flavodoxin YP_003683622.1 COGs: COG0205 6-phosphofructokinase; InterPro IPR000023:IPR012003:IPR012828:IPR015912; KEGG: geo:Geob_3759 6-phosphofructokinase; PFAM: phosphofructokinase; PRIAM: 6-phosphofructokinase; SPTR: C1XRQ0 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: Phosphofructokinase; TIGRFAM: 6-phosphofructokinase YP_003683623.1 InterPro IPR009061:IPR000551; KEGG: cai:Caci_7266 transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; SPTR: C1XRP9 Predicted transcriptional regulator; PFAM: MerR family regulatory protein YP_003683624.1 InterPro IPR012337:IPR009057:IPR001584; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XRP8 Integrase family protein; PFAM: Integrase core domain YP_003683625.1 COGs: COG0104 Adenylosuccinate synthase; InterPro IPR018220:IPR001114; KEGG: ttj:TTHA0222 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; PRIAM: Adenylosuccinate synthase; SMART: adenylosuccinate synthetase; SPTR: C1XRP7 Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthase YP_003683626.1 COGs: COG4636 conserved hypothetical protein; InterPro IPR008538:IPR012296; KEGG: ana:all1618 hypothetical protein; PFAM: protein of unknown function DUF820; SPTR: C1XRP6 Uncharacterized conserved protein; PFAM: Protein of unknown function (DUF820) YP_003683627.1 COGs: COG1217 membrane GTPase involved in stress response; InterProIPR000640:IPR005225:IPR006298:IPR009000:IPR 000795:IPR009022:IPR004161; KEGG: dra:DR_1198 GTP-binding elongation factor family protein TypA/BipA; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain protein; SMART: elongation factor G domain protein; SPTR: C1XRP5 GTP-binding protein TypA/BipA; TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein TypA/BipA; small GTP-binding protein domain YP_003683628.1 COGs: COG0009 Putative translation factor (SUA5); InterProIPR017945:IPR006070:IPR005145:IPR004388:IPR 010923; KEGG: saq:Sare_0020 SUA5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; SUA5 domain protein; SPTR: C1XRP4 Translation factor SUA5; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: yrdC domain; SUA5 domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein YP_003683629.1 COGs: COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport; InterPro IPR007474; KEGG: dge:Dgeo_1993 ApaG; PFAM: ApaG domain protein; SPTR: C1XRP3 Uncharacterized protein affecting Mg2+/Co2+ transport; PFAM: Protein of unknown function (DUF525) YP_003683630.1 KEGG: bcl:ABC4055 hypothetical protein; SPTR: C1XRP2 Putative uncharacterized protein YP_003683631.1 COGs: COG2318 conserved hypothetical protein; InterPro IPR007837; KEGG: dfe:Dfer_2288 DinB family protein; PFAM: DinB family protein; SPTR: C1XRP1 Uncharacterized conserved protein; PFAM: DinB family YP_003683632.1 COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR006439:IPR006402:IPR005834; KEGG: bay:RBAM_009500 YhcW; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: C1XRP0 Haloacid dehalogenase superfamily enzyme, subfamily IA; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E YP_003683633.1 COGs: COG3221 ABC-type phosphate/phosphonate transport system periplasmic component; InterPro IPR005770; KEGG: bba:Bd0859 alkylphosphonate ABC transporter; SPTR: C1XRN9 Phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein; TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; PFAM: NMT1/THI5 like; TIGRFAM: phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein YP_003683634.1 COGs: COG3638 ABC-type phosphate/phosphonate transport system ATPase component; InterPro IPR012693:IPR003439:IPR017871:IPR003593; KEGG: gym:GYMC10_2901 phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XRN8 Phosphonate ABC transporter, ATP-binding protein; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter; TIGRFAM: phosphonate ABC transporter, ATP-binding protein YP_003683635.1 COGs: COG3639 ABC-type phosphate/phosphonate transport system permease component; InterPro IPR005769:IPR000515; KEGG: bwe:BcerKBAB4_3370 phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XRN7 Phosphonate ABC transporter, permease protein PhnE; TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphonate ABC transporter, permease protein PhnE YP_003683636.1 COGs: COG1129 ABC-type sugar transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: dge:Dgeo_2855 ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XRN6 Monosaccharide ABC transporter ATP-binding protein, CUT2 family; PFAM: ABC transporter YP_003683637.1 COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: lch:Lcho_2222 monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; SPTR: C1XRN5 Monosaccharide ABC transporter membrane protein, CUT2 family; PFAM: Branched-chain amino acid transport system / permease component YP_003683638.1 InterPro IPR002559; KEGG: tth:TT_P0158 hypothetical protein; PFAM: transposase IS4 family protein; SPTR: C1XPN1 Transposase family protein; PFAM: Transposase DDE domain YP_003683639.1 COGs: COG1609 Transcriptional regulators; InterPro IPR010982:IPR000843:IPR001761; KEGG: dth:DICTH_1600 transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; SPTR: C1XRN0 Transcriptional regulator, LacI family; PFAM: Bacterial regulatory proteins, lacI family; family YP_003683640.1 COGs: COG3391 conserved hypothetical protein; InterPro IPR015943; KEGG: sus:Acid_5269 YVTN beta-propeller repeat-containing protein; SPTR: C1XYC6 Putative uncharacterized protein; PFAM: 3-carboxy-cis,cis-muconate lactonizing enzyme; TIGRFAM: 40-residue YVTN family beta-propeller repeat YP_003683641.1 COGs: COG0579 dehydrogenase; InterPro IPR006076; KEGG: mgm:Mmc1_3667 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: C1XRM8 Predicted dehydrogenase; PFAM: FAD dependent oxidoreductase YP_003683642.1 COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR011055:IPR016047; KEGG: ttj:TTHA1770 M23/M37 family endopeptidase; PFAM: Peptidase M23; SPTR: C1XRM7 Metalloendopeptidase-like membrane protein; PFAM: Peptidase family M23 YP_003683643.1 COGs: COG1664 Integral membrane protein CcmA involved in cell shape determination; InterPro IPR007607; KEGG: ttj:TTHA1769 hypothetical protein; PFAM: protein of unknown function DUF583; SPTR: C1XRM6 Integral membrane protein CcmA involved in cell shape determination; PFAM: Protein of unknown function, DUF583 YP_003683644.1 COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR011055:IPR016047; KEGG: ttj:TTHA1770 M23/M37 family endopeptidase; PFAM: Peptidase M23; SPTR: C1XRM5 Metalloendopeptidase-like membrane protein; PFAM: Peptidase family M23 YP_003683645.1 COGs: COG0777 Acetyl-CoA carboxylase beta subunit; InterPro IPR011762:IPR000022:IPR000438; KEGG: tth:TTC1409 acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; PFAM: carboxyl transferase; SPTR: C1XRM4 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; PFAM: Carboxyl transferase domain; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit YP_003683646.1 COGs: COG0825 Acetyl-CoA carboxylase alpha subunit; InterPro IPR011763:IPR020582:IPR001095; KEGG: ttj:TTHA1767 acetyl-CoA carboxylase carboxyl transferase, alpha subunit (AccA); PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region; PRIAM: Acetyl-CoA carboxylase; SPTR: C1XRM3 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit YP_003683647.1 InterPro IPR013784:IPR013229; KEGG: ttj:TTHA1766 S-layer-like protein; PFAM: PEGA domain protein; SPTR: C1XRM2 PEGA domain-containing protein; PFAM: PEGA domain YP_003683648.1 KEGG: ttj:TTHA0179 hypothetical protein; SPTR: C1XRM1 Putative uncharacterized protein YP_003683649.1 KEGG: ttj:TTHA0178 hypothetical protein; SPTR: C1XRM0 Putative uncharacterized protein YP_003683650.1 InterPro IPR017896:IPR001450:IPR017900:IPR000813; KEGG: ttj:TTHA0177 ferredoxin; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C1XRL9 Ferredoxin; PFAM: 4Fe-4S binding domain YP_003683651.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: dge:Dgeo_1108 alpha/beta hydrolase fold; PFAM: alpha/beta hydrolase fold; SPTR: C1XRL8 Predicted hydrolase or acyltransferase of alpha/beta superfamily; PFAM: alpha/beta hydrolase fold YP_003683652.1 COGs: COG2267 Lysophospholipase; InterPro IPR000073; KEGG: dra:DR_1351 alpha/beta fold family hydrolase; PFAM: alpha/beta hydrolase fold; SPTR: C1XRL7 Lysophospholipase; PFAM: TAP-like protein; alpha/beta hydrolase fold YP_003683653.1 InterPro IPR016196:IPR011701; KEGG: chl:Chy400_1293 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: C1XRL6 Major Facilitator Superfamily transporter; PFAM: Major Facilitator Superfamily YP_003683654.1 COGs: COG0439 Biotin carboxylase; InterPro IPR013815:IPR003135:IPR011761; KEGG: rca:Rcas_4094 biotin carboxylase-like protein; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; SPTR: C1XRL5 Biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain YP_003683655.1 COGs: COG4947 conserved hypothetical protein; InterPro IPR000801; KEGG: dat:HRM2_14820 hypothetical protein; PFAM: putative esterase; SPTR: C1XRL4 Uncharacterized conserved protein; PFAM: Putative esterase YP_003683656.1 InterPro IPR011051:IPR013096:IPR014710; KEGG: rec:RHECIAT_PC0000021 hypothetical protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: C1XRL3 Cupin domain-containing protein; PFAM: Cupin domain YP_003683657.1 KEGG: mac:MA2384 hypothetical protein; SPTR: C1XRL2 Putative uncharacterized protein YP_003683658.1 InterPro IPR000169:IPR000668; KEGG: nml:Namu_4457 PKD domain containing protein; PFAM: peptidase C1A papain; SPTR: C1XRL1 Cysteine protease; PFAM: Papain family cysteine protease YP_003683659.1 KEGG: ddr:Deide_15620 hypothetical protein, precursor; SPTR: C1XRK9 Putative uncharacterized protein YP_003683660.1 COGs: COG3899 ATPase; InterPro IPR011990:IPR019734:IPR011717:IPR013026; KEGG: ddr:Deide_1p00540 hypothetical protein; PFAM: Tetratricopeptide TPR_4; SPTR: C1XRK8 Putative uncharacterized protein; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003683661.1 KEGG: chl:Chy400_0319 hypothetical protein; SPTR: C1XRK7 Putative uncharacterized protein YP_003683662.1 KEGG: avi:Avi_4114 site-specific tyrosine recombinase XerC; SPTR: C1XRK6 Putative uncharacterized protein YP_003683663.1 KEGG: bmt:BSUIS_B0078 KpsF/GutQ family sugar isomerase; SPTR: C1XRK5 Putative uncharacterized protein YP_003683664.1 KEGG: ddr:Deide_15620 hypothetical protein, precursor; SPTR: C1XRK4 Putative uncharacterized protein YP_003683665.1 COGs: COG4870 Cysteine protease; InterPro IPR000169:IPR000668; KEGG: pmx:PERMA_0857 PKD domain protein; PFAM: peptidase C1A papain; SPTR: C1XRK3 Cysteine protease; PFAM: Papain family cysteine protease YP_003683666.1 SPTR: C1XRK2 Putative uncharacterized protein YP_003683667.1 COGs: COG3899 ATPase; InterProIPR003593:IPR019734:IPR013026:IPR005158:IPR 001440:IPR011717:IPR011990; KEGG: ddr:Deide_15610 putative transcriptional regulator, AfsR/DnrI/RedD family; PFAM: transcriptional activator domain; TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: AAA ATPase; Tetratricopeptide repeat; SPTR: C1XRK1 Putative transcriptional regulator; PFAM: Archaeal ATPase; Bacterial transcriptional activator domain YP_003683668.1 KEGG: similar to AGAP009638-PA; SPTR: C1XRK0 Putative uncharacterized protein YP_003683669.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: ttj:TTHA1834 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XRJ9 ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter YP_003683670.1 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: ttj:TTHA1833 ABC transporter, permease protein; PFAM: protein of unknown function DUF214; SPTR: C1XG51 ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease YP_003683671.1 InterPro IPR005358; KEGG: ddr:Deide_02401 hypothetical protein; PFAM: protein of unknown function UPF0153; SPTR: C1CZ12 Putative uncharacterized protein YP_003683672.1 COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611:IPR011877:IPR002139; KEGG: cya:CYA_2257 ribokinase; PFAM: PfkB domain protein; SPTR: C1XRJ7 Ribokinase; TIGRFAM: ribokinase; PFAM: pfkB family carbohydrate kinase; TIGRFAM: ribokinase YP_003683673.1 InterPro IPR001093:IPR013785:IPR015875; KEGG: lsa:LSA0276 inosine 5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; SPTR: C1XRJ6 IMP dehydrogenase/GMP reductase; PFAM: IMP dehydrogenase / GMP reductase domain YP_003683674.1 COGs: COG4636 conserved hypothetical protein; InterPro IPR008538:IPR012296; KEGG: tro:trd_A0289 hypothetical protein; PFAM: protein of unknown function DUF820; SPTR: C1XRJ5 Uncharacterized conserved protein; PFAM: Protein of unknown function (DUF820) YP_003683675.1 COGs: COG0013 Alanyl-tRNA synthetase; InterProIPR018162:IPR018163:IPR018165:IPR018164:IPR 012947:IPR003156:IPR002318; KEGG: ttj:TTHA1831 alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like; Threonyl/alanyl tRNA synthetase SAD; phosphoesterase DHHA1; PRIAM: Alanine--tRNA ligase; SPTR: C1XRJ4 Alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A); TIGRFAM: alanyl-tRNA synthetase YP_003683676.1 COGs: COG0816 endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis); InterPro IPR012337:IPR005227:IPR006641; KEGG: ttj:TTHA1829 hypothetical protein; PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; SPTR: C1XRJ3 Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0081); TIGRFAM: conserved hypothetical protein TIGR00250 YP_003683677.1 COGs: COG1559 periplasmic solute-binding protein; InterPro IPR003770; KEGG: ttj:TTHA1828 hypothetical protein; PFAM: aminodeoxychorismate lyase; SPTR: C1XRJ2 Predicted periplasmic solute-binding protein; PFAM: YceG-like family; TIGRFAM: conserved hypothetical protein TIGR00247 YP_003683678.1 KEGG: mta:Moth_0412 2-oxoisovalerate dehydrogenase, E1 component beta subunit; SPTR: C1XRJ1 Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0150) YP_003683679.1 COGs: COG3540 Phosphodiesterase/alkaline phosphatase D; InterPro IPR018946; KEGG: hch:HCH_04851 phosphodiesterase/alkaline phosphatase D; PFAM: Alkaline phosphatase D-related; PRIAM: Alkaline phosphatase; SPTR: C1XRJ0 Phosphodiesterase/alkaline phosphatase D; PFAM: PhoD-like phosphatase YP_003683680.1 COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006015:IPR014729:IPR006016; KEGG: tth:TTC1692 universal stress protein; PFAM: UspA domain protein; SPTR: C1XRI9 Universal stress protein UspA-like protein; PFAM: Universal stress protein family YP_003683681.1 COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR001482:IPR006321:IPR003593; KEGG: ddr:Deide_07650 putative twitching mobility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; SPTR: C1XRI8 Pilus retraction protein PilT; TIGRFAM: twitching motility protein; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT YP_003683682.1 COGs: COG0566 rRNA methylase; InterPro IPR013123:IPR001537:IPR004441; KEGG: ttj:TTHA0296 RNA methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; SPTR: C1XRI7 rRNA methylase, putative, group 3; TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: SpoU rRNA Methylase family; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, putative, group 3 YP_003683683.1 KEGG: ttj:TTHA0298 hypothetical protein; SPTR: C1XRI6 Putative uncharacterized protein YP_003683684.1 KEGG: hau:Haur_4505 PT repeat-containing protein; SPTR: C1XRI5 Putative uncharacterized protein YP_003683685.1 InterProIPR001440:IPR011990:IPR019734:IPR011717:IPR 013026; KEGG: scl:sce1774 hypothetical protein; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; SPTR: C1XRI4 Tetratricopeptide repeat protein; PFAM: Tetratricopeptide repeat YP_003683686.1 InterPro IPR007016; KEGG: dal:Dalk_1339 O-antigen polymerase; PFAM: O-antigen polymerase; SPTR: C1XRI3 O-Antigen Polymerase; PFAM: O-Antigen ligase YP_003683687.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: gur:Gura_3778 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: C1XRI2 Glycosyltransferase; PFAM: Glycosyl transferases group 1 YP_003683688.1 COGs: COG2605 kinase related to galactokinase and mevalonate kinase; InterProIPR020568:IPR006204:IPR013750:IPR014721:IPR 014606:IPR001174; KEGG: cac:CAC3055 sugar kinase; PFAM: GHMP kinase; GHMP kinase domain protein; SPTR: C1XRI1 Predicted kinase, galactokinase/mevalonate kinase; PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain YP_003683689.1 COGs: COG0279 Phosphoheptose isomerase; InterPro IPR001347:IPR004515; KEGG: rce:RC1_0829 phosphoheptose isomerase; PFAM: sugar isomerase (SIS); SPTR: C1XRI0 Phosphoheptose isomerase; TIGRFAM: phosphoheptose isomerase; PFAM: SIS domain; TIGRFAM: phosphoheptose isomerase YP_003683690.1 COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); InterPro IPR006543:IPR004446:IPR005835:IPR006549; KEGG: mrd:Mrad2831_1224 HAD superfamily hydrolase; PFAM: Nucleotidyl transferase; SPTR: C1XRH9 Histidinol-phosphate phosphatase family protein; TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase; Nucleotidyl transferase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family domain YP_003683691.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: mae:Maeo_0394 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: C1XRH8 Glycosyltransferase; PFAM: Glycosyl transferases group 1 YP_003683692.1 KEGG: ttj:TTHA0285 hypothetical protein; SPTR: C1XRH7 Putative uncharacterized protein YP_003683693.1 KEGG: cyn:Cyan7425_0061 hypothetical protein; SPTR: C1XRH6 Putative uncharacterized protein YP_003683694.1 KEGG: ddr:Deide_01250 conserved hypothetical protein, precursor; SPTR: C1XRH5 Putative uncharacterized protein YP_003683695.1 COGs: COG3899 ATPase; InterProIPR019734:IPR013026:IPR005158:IPR011717:IPR 013105:IPR011990; KEGG: mxa:MXAN_7321 AfsR/DnrI/RedD family transcriptional regulator; PFAM: transcriptional activator domain; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SPTR: C1XRH4 Putative transcriptional regulator; PFAM: Bacterial transcriptional activator domain YP_003683696.1 KEGG: mxa:MXAN_7321 AfsR/DnrI/RedD family transcriptional regulator; SPTR: C1XRH3 Putative uncharacterized protein YP_003683697.1 COGs: COG2223 Nitrate/nitrite transporter; InterPro IPR011701:IPR016196; KEGG: mrd:Mrad2831_2593 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: C1XRH2 Nitrate/nitrite transporter; PFAM: Major Facilitator Superfamily; TIGRFAM: nitrite extrusion protein (nitrite facilitator) YP_003683698.1 COGs: COG2223 Nitrate/nitrite transporter; InterPro IPR011701:IPR016196; KEGG: saq:Sare_0191 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: C1XRH1 Nitrate/nitrite transporter; PFAM: Major Facilitator Superfamily YP_003683699.1 COGs: COG2181 Nitrate reductase gamma subunit; InterPro IPR003816; KEGG: gme:Gmet_1022 respiratory nitrate reductase gamma subunit; PFAM: Nitrate reductase gamma subunit; SPTR: C1XRH0 Respiratory nitrate reductase, gamma subunit; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit; TIGRFAM: respiratory nitrate reductase, gamma subunit YP_003683700.1 COGs: COG2180 Nitrate reductase delta subunit; KEGG: afw:Anae109_3597 nitrate reductase molybdenum cofactor assembly chaperone; SPTR: C1XRG9 Nitrate reductase delta subunit; PFAM: Nitrate reductase delta subunit; TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone YP_003683701.1 COGs: COG1140 Nitrate reductase beta subunit; InterPro IPR017896:IPR006547; KEGG: gme:Gmet_1021 respiratory nitrate reductase beta subunit; SPTR: C1XRG8 Respiratory nitrate reductase beta subunit; TIGRFAM: nitrate reductase, beta subunit; TIGRFAM: nitrate reductase, beta subunit YP_003683702.1 COGs: COG5013 Nitrate reductase alpha subunit; InterProIPR009010:IPR006656:IPR006657:IPR006468:IPR 006655; KEGG: gme:Gmet_1020 nitrate oxidoreductase alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; PRIAM: Nitrate reductase; SPTR: C1XRG6 Nitrate oxidoreductase alpha subunit; TIGRFAM: nitrate reductase, alpha subunit; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; TIGRFAM: respiratory nitrate reductase, alpha subunit YP_003683703.1 InterPro IPR009056:IPR003088; KEGG: glo:Glov_0202 cytochrome c class I; PFAM: cytochrome c class I; SPTR: C1XRG5 Cytochrome c553; PFAM: Cytochrome c YP_003683704.1 KEGG: hypothetical protein; SPTR: C1XRG4 Putative uncharacterized protein YP_003683705.1 COGs: COG3947 Response regulator containing CheY-like receiver and SARP domains; InterProIPR005158:IPR001867:IPR011991:IPR003018:IPR 016032; KEGG: rrs:RoseRS_4345 transcriptional activator domain-containing protein; PFAM: transcriptional activator domain; transcriptional regulator domain protein; GAF domain protein; SMART: transcriptional regulator domain protein; GAF domain protein; SPTR: C1XRG3 Transcriptional regulator with GAF domain; PFAM: Bacterial transcriptional activator domain; Transcriptional regulatory protein, C terminal YP_003683706.1 KEGG: gfo:GFO_0247 membrane protein; SPTR: C1XRG2 Putative uncharacterized protein YP_003683707.1 KEGG: sro:Sros_1609 hypothetical protein; SPTR: C1XRG1 Putative uncharacterized protein YP_003683708.1 COGs: COG3899 ATPase; InterProIPR001054:IPR019734:IPR013026:IPR001440:IPR 011990; KEGG: hau:Haur_1458 adenylate/guanylate cyclase; PFAM: TPR repeat-containing protein; SPTR: C1XRG0 Predicted ATPase, COG3899; PFAM: Adenylate and Guanylate cyclase catalytic domain YP_003683709.1 KEGG: sgr:SGR_6303 putative 1-acylglycerol-3-phosphate O-acyltransferase; SPTR: C1XRF9 Putative uncharacterized protein YP_003683710.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterProIPR018490:IPR000595:IPR001808:IPR012318:IPR 014710:IPR011991; KEGG: dge:Dgeo_0780 Crp/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; SPTR: C1XRF8 cAMP-binding protein; PFAM: Cyclic nucleotide-binding domain YP_003683711.1 InterPro IPR011051:IPR013096:IPR014710; KEGG: rrs:RoseRS_4464 hypothetical protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: C1XRF7 Cupin domain-containing protein; PFAM: Cupin domain YP_003683712.1 KEGG: tth:TT_P0088 hypothetical protein; SPTR: C1XRF6 Putative uncharacterized protein YP_003683713.1 KEGG: rmr:Rmar_2284 hypothetical protein; SPTR: C1XRF5 Putative uncharacterized protein YP_003683714.1 InterPro IPR017896:IPR001450; KEGG: sti:Sthe_0630 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C1XRF4 Indolepyruvate ferredoxin oxidreductase, alpha/beta subunit; PFAM: 4Fe-4S binding domain YP_003683715.1 InterPro IPR017896:IPR001450:IPR017900:IPR000813; KEGG: ttj:TTHA0177 ferredoxin; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C1XRF3 Indolepyruvate ferredoxin oxidreductase, alpha/beta subunit; PFAM: 4Fe-4S binding domain YP_003683716.1 COGs: COG4309 conserved hypothetical protein; InterPro IPR018720; KEGG: mag:amb3531 hypothetical protein; PFAM: Protein of unknown function DUF2249; SPTR: C1XRF0 Uncharacterized conserved protein; PFAM: Uncharacterized conserved protein (DUF2249) YP_003683717.1 KEGG: ttj:TTHB137 hypothetical protein; SPTR: C1XRE9 Putative uncharacterized protein YP_003683718.1 COGs: COG2151 metal-sulfur cluster biosynthetic protein; InterPro IPR002744:IPR002052; KEGG: ttj:TTHB138 hypothetical protein; PFAM: protein of unknown function DUF59; SPTR: C1XRE8 Predicted metal-sulfur cluster biosynthetic enzyme; PFAM: Domain of unknown function DUF59 YP_003683719.1 COGs: COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; InterPro IPR002218:IPR013027; KEGG: tth:TTC1534 NAD(FAD)-utilizing enzyme; PFAM: glucose-inhibited division protein A; SPTR: C1XRE7 NAD/FAD-utilizing enzyme apparently involved in cell division; PFAM: Glucose inhibited division protein A YP_003683720.1 COGs: COG1194 A/G-specific DNA glycosylase; InterProIPR011257:IPR015797:IPR003265:IPR003651:IPR 000086:IPR004035; KEGG: ttj:TTHA1898 A/G-specific adenine glycosylase (MutY); PFAM: HhH-GPD family protein; iron-sulfur cluster loop; SMART: HhH-GPD family protein; iron-sulfur cluster loop; SPTR: C1XGJ6 A/G-specific DNA-adenine glycosylase; PFAM: HhH-GPD superfamily base excision DNA repair protein; TIGRFAM: A/G-specific adenine glycosylase YP_003683721.1 COGs: COG5530 integral membrane protein; InterPro IPR014470; KEGG: ddr:Deide_3p00950 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: C1XRE6 Predicted membrane protein, COG5530; PFAM: Predicted integral membrane protein (DUF2270) YP_003683722.1 COGs: COG1832 CoA-binding protein; InterPro IPR016040:IPR003781; KEGG: ttj:TTHA1899 hypothetical protein; SMART: CoA-binding domain protein; SPTR: C1XRE5 Predicted CoA-binding protein, COG1832 YP_003683723.1 COGs: COG0622 phosphoesterase; InterPro IPR004843:IPR011152; KEGG: dge:Dgeo_1656 metallophosphoesterase; PFAM: metallophosphoesterase; SPTR: C1XRE4 Predicted phosphoesterase; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: phosphoesterase, MJ0936 family YP_003683724.1 KEGG: ljf:FI9785_135 hypothetical protein; SPTR: C1XRE3 Putative uncharacterized protein YP_003683725.1 COGs: COG0171 NAD synthase; InterPro IPR014729:IPR003694; KEGG: ttj:TTHA1900 NH(3)-dependent NAD(+) synthetase; PFAM: NAD synthase; PRIAM: NAD(+) synthase; SPTR: C1XRE2 NH(3)-dependent NAD(+) synthetase; TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; TIGRFAM: NAD+ synthetase YP_003683726.1 COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: ttj:TTHA1901 carbon-nitrogen hydrolase family protein; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: C1XRE1 Predicted amidohydrolase; PFAM: Carbon-nitrogen hydrolase YP_003683727.1 COGs: COG3339 conserved hypothetical protein; InterPro IPR010652:IPR016983; KEGG: slo:Shew_0234 hypothetical protein; PFAM: protein of unknown function DUF1232; SPTR: C1XRE0 Uncharacterized conserved protein; PFAM: Protein of unknown function (DUF1232) YP_003683728.1 KEGG: rca:Rcas_2476 monogalactosyldiacylglycerol synthase; SPTR: C1XRD9 Putative uncharacterized protein YP_003683729.1 KEGG: amr:AM1_0688 hypothetical protein; SPTR: C1XRD8 Putative uncharacterized protein YP_003683730.1 KEGG: sru:SRU_0173 hypothetical protein; SPTR: C1XRD7 Putative uncharacterized protein YP_003683731.1 COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR016040:IPR013149:IPR011032:IPR013154; KEGG: tth:TTC1833 quinone oxidoreductase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; SPTR: C1XRD6 Zn-dependent oxidoreductase, NADPH:quinone reductase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase YP_003683732.1 COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR017853:IPR001764:IPR019800; KEGG: cvi:CV_0259 glycosy hydrolase family protein; PFAM: glycoside hydrolase family 3 domain protein; PRIAM: Beta-N-acetylhexosaminidase; SPTR: C1XRD5 Beta-glucosidase-like glycosyl hydrolase; PFAM: Glycosyl hydrolase family 3 N terminal domain YP_003683733.1 COGs: COG1737 Transcriptional regulators; InterPro IPR000281:IPR001347; KEGG: tte:TTE2419 transcriptional regulator; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); SPTR: C1XRD4 Transcriptional regulator; PFAM: SIS domain; Helix-turn-helix domain, rpiR family YP_003683734.1 COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: dge:Dgeo_0687 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: C1XRD3 Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: Bacterial extracellular solute-binding protein YP_003683735.1 COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: cvi:CV_2898 sugar ABC transporter permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XRD2 Carbohydrate ABC transporter membrane protein 1, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component YP_003683736.1 COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: cvi:CV_0260 sugar ABC transporter permease; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XRD1 Carbohydrate ABC transporter membrane protein 2, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component YP_003683737.1 InterPro IPR003953; KEGG: dge:Dgeo_1170 hypothetical protein; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; SPTR: C1XRD0 Pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD binding domain YP_003683738.1 KEGG: ddr:Deide_13650 hypothetical protein; SPTR: C1XRC9 Putative uncharacterized protein YP_003683739.1 COGs: COG1820 N-acetylglucosamine-6-phosphate deacetylase; InterPro IPR003764:IPR006680; KEGG: tth:TT_P0025 N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; PRIAM: N-acetylglucosamine-6-phosphate deacetylase; SPTR: C1XRC8 N-acetylglucosamine 6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: Amidohydrolase family; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase YP_003683740.1 COGs: COG2222 phosphosugar isomerase; InterPro IPR001347; KEGG: sml:Smlt4021 putative phosphosugar-binding protein; PFAM: sugar isomerase (SIS); PRIAM: Glutamine--fructose-6-phosphate transaminase (isomerizing); SPTR: C1XRC7 Glutamine--fructose-6-phosphate transaminase; PFAM: SIS domain YP_003683741.1 COGs: COG3010 Putative N-acetylmannosamine-6-phosphate epimerase; InterPro IPR007260:IPR013785:IPR011060; KEGG: sro:Sros_2477 N-acylglucosamine-6-phosphate 2-epimerase; PFAM: putative N-acetylmannosamine-6-phosphate epimerase; PRIAM: N-acylglucosamine-6-phosphate 2-epimerase; SPTR: C1XRC6 Putative N-acetylmannosamine-6-phosphate epimerase; PFAM: Putative N-acetylmannosamine-6-phosphate epimerase YP_003683742.1 COGs: COG2971 N-acetylglucosamine kinase; InterPro IPR002731; KEGG: sth:STH292 hypothetical protein; PFAM: ATPase BadF/BadG/BcrA/BcrD type; SPTR: C1XRC5 Predicted N-acetylglucosamine kinase; PFAM: BadF/BadG/BcrA/BcrD ATPase family YP_003683743.1 COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family; InterPro IPR001155:IPR013785; KEGG: ttj:TTHA0157 NADH-dependent flavin oxidoreductase; PFAM: NADH:flavin oxidoreductase/NADH oxidase; SPTR: C1XRC4 NADH:flavin oxidoreductase; PFAM: NADH:flavin oxidoreductase / NADH oxidase family YP_003683744.1 COGs: COG0033 Phosphoglucomutase; InterProIPR016066:IPR005845:IPR005844:IPR005852:IPR 016055:IPR005846:IPR005843; KEGG: dge:Dgeo_1875 phosphoglucomutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; SPTR: C1XRC3 Phosphoglucomutase, alpha-D-glucose phosphate-specific; TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific YP_003683745.1 COGs: COG1917 conserved hypothetical protein contains double-stranded beta-helix domain; InterPro IPR003313:IPR013096:IPR014710; KEGG: oca:OCAR_5404 cupin region; PFAM: Cupin 2 conserved barrel domain protein; SPTR: C1XRC2 Uncharacterized conserved protein, contains double-stranded beta-helix domain; PFAM: Cupin domain YP_003683746.1 COGs: COG3860 conserved hypothetical protein; InterPro IPR001845:IPR001808:IPR018656:IPR011991; KEGG: rrs:RoseRS_0452 hypothetical protein; PFAM: Protein of unknown function DUF2087; regulatory protein ArsR; SMART: regulatory protein ArsR; regulatory protein Crp; SPTR: C1XRC1 Uncharacterized conserved protein; PFAM: Bacterial regulatory protein, arsR family; Uncharacterized protein conserved in bacteria (DUF2087) YP_003683747.1 KEGG: dps:DP2906 hypothetical protein; SPTR: C1XRC0 Putative uncharacterized protein YP_003683748.1 COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR013786:IPR006091:IPR006089:IPR009100:IPR 006090:IPR013764:IPR006092:IPR009075; KEGG: ttj:TTHA1144 acetyl-coenzyme A dehydrogenase, medium chain; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: C1XRB9 Acyl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain YP_003683749.1 COGs: COG2086 Electron transfer flavoprotein beta subunit; InterPro IPR014729:IPR014730:IPR012255; KEGG: ttj:TTHA1145 electron transfer flavoprotein, beta subunit; PFAM: Electron transfer flavoprotein alpha/beta-subunit; SMART: Electron transfer flavoprotein alpha/beta-subunit; SPTR: C1XRB8 Electron transfer flavoprotein, beta subunit; PFAM: Electron transfer flavoprotein domain YP_003683750.1 COGs: COG2025 Electron transfer flavoprotein alpha subunit; InterPro IPR014729:IPR001308:IPR014730:IPR014731; KEGG: ttj:TTHA1146 electron transfer flavoprotein, alpha subunit; PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; SMART: Electron transfer flavoprotein alpha/beta-subunit; SPTR: C1XRB7 Electron transfer flavoprotein, alpha subunit; PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain YP_003683751.1 KEGG: ade:Adeh_0244 LigA; SPTR: C1XRB4 Putative uncharacterized protein YP_003683752.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701:IPR001958:IPR005829:IPR016196; KEGG: dge:Dgeo_1928 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: C1XRB3 Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily YP_003683753.1 InterPro IPR000835:IPR011991; KEGG: dra:DR_0259 hypothetical protein; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1XRB2 Transcriptional regulator; PFAM: MarR family YP_003683754.1 KEGG: chl:Chy400_1731 hypothetical protein; SPTR: C1XRB1 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2892) YP_003683755.1 KEGG: rrs:RoseRS_0054 hypothetical protein; SPTR: C1XRB0 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2892) YP_003683756.1 COGs: COG2345 transcriptional regulator protein; InterPro IPR001034; KEGG: rrs:RoseRS_0707 transcriptional regulator, TrmB; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; SPTR: C1XRA9 Predicted transcriptional regulator, COG2345; PFAM: DeoR-like helix-turn-helix domain YP_003683757.1 KEGG: ttj:TTHA0303 hypothetical protein; SPTR: C1XRA8 Putative uncharacterized protein YP_003683758.1 COGs: COG0623 Enoyl-(acyl-carrier-protein); InterPro IPR016040:IPR002198:IPR002347; KEGG: ttj:TTHA0304 enoyl-[acyl carrier protein] reductase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: C1XRA7 Enoyl-(Acyl-carrier-protein) reductase (NADH); PFAM: short chain dehydrogenase YP_003683759.1 COGs: COG0294 Dihydropteroate synthase; InterPro IPR000489:IPR011005:IPR006390; KEGG: ttj:TTHA0191 dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; PRIAM: Dihydropteroate synthase; SPTR: C1XRA6 Dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase YP_003683760.1 COGs: COG1539 Dihydroneopterin aldolase; InterPro IPR006156:IPR006157; KEGG: ttj:TTHA0190 dihydroneopterin aldolase; PFAM: dihydroneopterin aldolase; SMART: dihydroneopterin aldolase; SPTR: C1XRA5 Dihydroneopterin aldolase; TIGRFAM: dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase; TIGRFAM: dihydroneopterin aldolase; FolB domain YP_003683761.1 COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209:IPR010259:IPR009020; KEGG: dge:Dgeo_0978 peptidase S8 and S53, subtilisin, kexin, sedolisin; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; proteinase inhibitor I9 subtilisin propeptide; SPTR: C1XRA4 Subtilisin-like serine protease; PFAM: Peptidase inhibitor I9; Subtilase family YP_003683762.1 COGs: COG2258 conserved hypothetical protein; InterPro IPR011037:IPR005302:IPR015808; KEGG: dge:Dgeo_0846 MOSC domain-containing protein; PFAM: MOSC domain containing protein; SPTR: C1XRA3 Uncharacterized conserved protein; PFAM: MOSC domain YP_003683763.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701:IPR001958:IPR016196; KEGG: tth:TTC1722 multidrug resistance protein 2; PFAM: major facilitator superfamily MFS_1; SPTR: C1XRA2 Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily YP_003683764.1 COGs: COG1801 conserved hypothetical protein; InterPro IPR002763; KEGG: dge:Dgeo_1898 hypothetical protein; PFAM: protein of unknown function DUF72; SPTR: C1XRA1 Uncharacterized conserved protein; PFAM: Protein of unknown function DUF72 YP_003683765.1 COGs: COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1 4-benzoquinol methylase; InterPro IPR013216; KEGG: rer:RER_05750 methyltransferase; PFAM: Methyltransferase type 11; SPTR: C1XRA0 Methyltransferase family protein; PFAM: Methyltransferase small domain YP_003683766.1 KEGG: dra:DR_2550 hypothetical protein; SPTR: C1XR99 Putative uncharacterized protein YP_003683767.1 COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR002986:IPR000183:IPR009006; KEGG: dra:DR_1758 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: C1XR98 Diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase YP_003683768.1 COGs: COG2071 glutamine amidotransferase; InterPro IPR011697:IPR017926; KEGG: chl:Chy400_0496 peptidase C26; PFAM: peptidase C26; SPTR: C1XR97 Predicted glutamine amidotransferase; PFAM: Peptidase C26 YP_003683769.1 COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182:IPR016181; KEGG: ana:alr7095 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: C1XR96 Acetyltransferase, ribosomal protein N-acetylase; PFAM: Acetyltransferase (GNAT) family YP_003683770.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XVE2 Integrase family protein; PFAM: Integrase core domain YP_003683771.1 COGs: COG1850 Ribulose 1 5-bisphosphate carboxylase large subunit; InterPro IPR017443:IPR000685; KEGG: rpe:RPE_3678 rubisco-like protein Rlp1; PFAM: ribulose bisphosphate carboxylase large chain; SPTR: C1XR93 Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; PFAM: Ribulose bisphosphate carboxylase large chain, catalytic domain YP_003683772.1 InterPro IPR011051:IPR013096:IPR014710; KEGG: rpd:RPD_2234 cupin 2, barrel; PFAM: Cupin 2 conserved barrel domain protein; SPTR: C1XR92 Uncharacterized conserved protein, contains double-stranded beta-helix domain; PFAM: Cupin domain YP_003683773.1 COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; InterPro IPR001126:IPR017963:IPR017961; KEGG: mmb:Mmol_1614 DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein; PRIAM: DNA-directed DNA polymerase; SPTR: C1XR91 Nucleotidyltransferase/DNA polymerase involved in DNA repair; PFAM: impB/mucB/samB family C-terminal; impB/mucB/samB family YP_003683774.1 COGs: COG0787 Alanine racemase; InterProIPR020622:IPR000821:IPR011079:IPR001608:IPR 009006; KEGG: tth:TTC1944 alanine racemase; PFAM: alanine racemase domain protein; PRIAM: Alanine racemase; SPTR: C1XR90 Alanine racemase; TIGRFAM: alanine racemase; PFAM: Alanine racemase, C-terminal domain; Alanine racemase, N-terminal domain; TIGRFAM: alanine racemase YP_003683775.1 KEGG: tth:TTC1945 hypothetical protein; SPTR: C1XR89 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3208) YP_003683776.1 InterPro IPR019248:IPR008960:IPR015922; KEGG: tth:TTC1666 hypothetical protein; PFAM: Protein of unknown function DUF2223; SPTR: C1XR88 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF2223) YP_003683777.1 COGs: COG0391 conserved hypothetical protein; InterPro IPR010119:IPR002882; KEGG: ttj:TTHA0318 hypothetical protein; PFAM: protein of unknown function UPF0052 and CofD; SPTR: C1XR87 Putative uncharacterized protein; PFAM: Uncharacterised protein family UPF0052; TIGRFAM: conserved hypothetical protein, cofD-related YP_003683778.1 COGs: COG1660 P-loop-containing kinase; InterPro IPR005337; KEGG: tth:TTC1664 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: C1XR86 Predicted P-loop-containing kinase; PFAM: P-loop ATPase protein family YP_003683779.1 COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR001179; KEGG: mxa:MXAN_6849 peptidyl-prolyl cis-trans isomerase, FKBP-type; PFAM: peptidylprolyl isomerase FKBP-type; PRIAM: Peptidylprolyl isomerase; SPTR: C1XR85 Peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase YP_003683780.1 COGs: COG0820 Fe-S-cluster redox enzyme; InterPro IPR007197:IPR004383:IPR006638; KEGG: tth:TTC1574 florfenicol resistance protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: C1XR84 23S rRNA m(2)A-2503 methyltransferase; TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM enzyme, Cfr family YP_003683781.1 COGs: COG2200 FOG: EAL domain; InterPro IPR003018:IPR001633:IPR000160; KEGG: ddc:Dd586_3389 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: EAL domain protein; GAF domain protein; SMART: EAL domain protein; GAF domain protein; SPTR: C1XR83 EAL domain-containing protein; PFAM: EAL domain; GAF domain YP_003683782.1 KEGG: ttj:TTHA0060 hypothetical protein; SPTR: C1XR82 Putative uncharacterized protein YP_003683783.1 COGs: COG0314 Molybdopterin converting factor large subunit; InterProIPR003448:IPR012675:IPR003749:IPR016155:IPR 010038:IPR010034; KEGG: tth:TTC1947 molybdopterin (MPT) converting factor, subunit 2; PFAM: molybdopterin biosynthesis MoaE protein; thiamineS protein; SPTR: C1XR81 Molybdopterin synthase subunit MoaE; molybdopterin synthase subunit MoaD; TIGRFAM: molybdopterin converting factor, subunit 1; MoaD family protein; PFAM: ThiS family; MoaE protein; TIGRFAM: MoaD family protein, archaeal; molybdopterin converting factor, subunit 1, non-archaeal YP_003683784.1 COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterProIPR003594:IPR013506:IPR006171:IPR002288:IPR 014721:IPR013759:IPR013760:IPR020568:IPR017441:IPR018522:I PR011557:IPR001241:IPR000565; KEGG: tth:TTC1222 DNA gyrase subunit B; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA gyrase subunit B domain protein; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; SPTR: C1XR80 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: Toprim domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; TIGRFAM: DNA gyrase, B subunit YP_003683785.1 KEGG: ttj:TTHA1585 hypothetical protein; SPTR: C1XR79 Putative uncharacterized protein YP_003683786.1 COGs: COG0547 Anthranilate phosphoribosyltransferase; InterPro IPR000312:IPR005940:IPR017459; KEGG: ttj:TTHA1842 anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like; PRIAM: Anthranilate phosphoribosyltransferase; SPTR: C1XR78 Anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: Glycosyl transferase family, a/b domain; Glycosyl transferase family, helical bundle domain; TIGRFAM: anthranilate phosphoribosyltransferase YP_003683787.1 COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: rxy:Rxyl_0564 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: C1XR77 Predicted glycosyltransferase; PFAM: Glycosyl transferase family 2 YP_003683788.1 COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: cyb:CYB_1863 glycosyl transferase, group 2 family protein; PFAM: glycosyl transferase family 2; SPTR: C1XR76 Predicted glycosyltransferase; PFAM: Glycosyl transferase family 2 YP_003683789.1 COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: chl:Chy400_1780 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: C1XR75 Predicted glycosyltransferase; PFAM: Glycosyl transferase family 2 YP_003683790.1 COGs: COG0512 Anthranilate/para-aminobenzoate synthase component II; InterProIPR001317:IPR017926:IPR011702:IPR006220:IPR 000991:IPR006221; KEGG: ttj:TTHA1843 anthranilate synthase component II; PFAM: glutamine amidotransferase class-I; SPTR: C1XR74 Anthranilate synthase, component II; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase YP_003683791.1 COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterProIPR006805:IPR015890:IPR005801:IPR005256:IPR 019999; KEGG: ttj:TTHA1844 anthranilate synthase component I (TrpE); PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein; PRIAM: Anthranilate synthase; SPTR: C1XR73 Anthranilate synthase, component I; TIGRFAM: anthranilate synthase component I; PFAM: chorismate binding enzyme; Anthranilate synthase component I, N terminal region; TIGRFAM: anthranilate synthase component I, non-proteobacterial lineages; aminodeoxychorismate synthase, component I, clade 2 YP_003683792.1 COGs: COG0520 Selenocysteine lyase; InterPro IPR015424:IPR011340:IPR000192:IPR015421; KEGG: dra:DR_0151 NifS-related protein; PFAM: aminotransferase class V; PRIAM: Cysteine desulfurase; SPTR: C1XR72 Cysteine desulfurase family protein, VC1184 subfamily; TIGRFAM: cysteine desulfurase family protein; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase family protein, VC1184 subfamily YP_003683793.1 COGs: COG4877 conserved hypothetical protein; InterPro IPR010985; KEGG: chy:CHY_0093 hypothetical protein; SPTR: C1XR71 Uncharacterized conserved protein; PFAM: Protein of unknown function (DUF3423) YP_003683794.1 COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: amr:AM1_5914 hypothetical protein; PFAM: band 7 protein; SMART: band 7 protein; SPTR: C1XR70 Membrane protease subunit, stomatin/prohibitin; PFAM: SPFH domain / Band 7 family YP_003683795.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: tth:TTC1397 putative response regulator protein; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; SPTR: C1XR69 Diguanylate cyclase (GGDEF) domain-containing protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_003683796.1 COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR010175:IPR002933; KEGG: ttj:TTHA1757 acetyl-lysine deacetylase; PFAM: peptidase M20; SPTR: C1XR68 Acetylornithine deacetylase; N2-acetyl-L-lysine deacetylase; TIGRFAM: N-acetyl-ornithine/N-acetyl-lysine deacetylase; PFAM: Peptidase family M20/M25/M40; TIGRFAM: N-acetyl-ornithine/N-acetyl-lysine deacetylase YP_003683797.1 COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR004636:IPR015424:IPR005814:IPR015421; KEGG: ttj:TTHA1755 acetylornithine/acetyl-lysine aminotransferase; PFAM: aminotransferase class-III; PRIAM: Acetylornithine transaminase; SPTR: C1XR67 N2-acetyl-L-lysine aminotransferase; acetylornithine aminotransferase; TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: acetylornithine and succinylornithine aminotransferases YP_003683798.1 COGs: COG0801 7 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; InterPro IPR000550; KEGG: ttj:TTHA1749 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (FolK); PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; PRIAM:2-amino-4-hydroxy-6-hydroxymethyldihydropteri dinediphosphokinase; SPTR: C1XR66 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM:2-amino-4-hydroxy-6-hydroxymethyldihydropte ridinepyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase YP_003683799.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000639:IPR000073; KEGG: cag:Cagg_2918 alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold; SPTR: C1XR65 Predicted hydrolase or acyltransferase of alpha/beta superfamily; PFAM: alpha/beta hydrolase fold YP_003683800.1 COGs: COG0285 Folylpolyglutamate synthase; InterPro IPR013221:IPR001645:IPR004101:IPR018109; KEGG: ttj:TTHA0343 folyl-polyglutamate synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: C1XR64 Folylpolyglutamate synthase/dihydrofolate synthase; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase YP_003683801.1 COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: ttj:TTHA0344 ferric uptake regulatory protein; PFAM: ferric-uptake regulator; SPTR: C1XR63 Fe2+/Zn2+ uptake regulation protein; PFAM: Ferric uptake regulator family YP_003683802.1 COGs: COG0181 Porphobilinogen deaminase; InterPro IPR000860; KEGG: ttj:TTHA0345 porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; PRIAM: Hydroxymethylbilane synthase; SPTR: C1XR62 Hydroxymethylbilane synthase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase, C-terminal domain; Porphobilinogen deaminase, dipyromethane cofactor binding domain; TIGRFAM: porphobilinogen deaminase YP_003683803.1 KEGG: ddr:Deide_19760 hypothetical protein; SPTR: C1XR61 Putative uncharacterized protein YP_003683804.1 KEGG: hypothetical protein; SPTR: C1XR60 Putative uncharacterized protein YP_003683805.1 COGs: COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylase; InterPro IPR002830; KEGG: ttj:TTHA0373 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD; PFAM: Carboxylyase-related protein; SPTR: C1XR59 3-octaprenyl-4hydroxybenzoate decarboxylase; TIGRFAM: UbiD family decarboxylase; PFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: UbiD family decarboxylases YP_003683806.1 COGs: COG1881 Phospholipid-binding protein; InterPro IPR008914; KEGG: ava:Ava_4111 PBP family phospholipid-binding protein; SPTR: C1XR58 Phospholipid-binding protein; PFAM: Phosphatidylethanolamine-binding protein; TIGRFAM: conserved hypothetical protein TIGR00481 YP_003683807.1 COGs: COG0792 endonuclease distantly related to Holliday junction resolvase; InterPro IPR003509:IPR011335; KEGG: ttj:TTHA0372 hypothetical protein; PFAM: protein of unknown function UPF0102; SPTR: C1XR57 Predicted endonuclease related to Holliday junction resolvase; PFAM: Uncharacterised protein family UPF0102 YP_003683808.1 COGs: COG1521 Putative transcriptional regulator protein; InterPro IPR004619; KEGG: mta:Moth_0146 pantothenate kinase; PFAM: Bvg accessory factor; SPTR: C1XR56 Pantothenate kinase; TIGRFAM: transcriptional activator, Baf family; PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III YP_003683809.1 COGs: COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase; InterPro IPR003382:IPR007085:IPR005252; KEGG: tro:trd_0347 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein; PRIAM: Phosphopantothenate--cysteine ligase; SPTR: C1XR55 Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA / pantothenate metabolism flavoprotein; Flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic YP_003683810.1 InterPro IPR011991; KEGG: bbe:BBR47_04210 hypothetical protein; SPTR: C1XR54 Putative uncharacterized protein YP_003683811.1 KEGG: hmu:Hmuk_3025 ABC-2 type transporter; SPTR: C1XR53 Putative uncharacterized protein YP_003683812.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: sro:Sros_4339 ABC-type transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XR52 ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter YP_003683813.1 KEGG: met:M446_4620 2-keto-3-deoxy-galactonokinase; SPTR: C1XR51 Putative uncharacterized protein YP_003683814.1 InterPro IPR001119; KEGG: hau:Haur_1413 band 7 protein; PFAM: S-layer domain protein; SPTR: C1XR50 Putative S-layer protein; PFAM: S-layer homology domain YP_003683815.1 COGs: COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; InterPro IPR013749:IPR004399; KEGG: ttj:TTHA0680 phosphomethylpyrimidine kinase (ThiD); PFAM: Phosphomethylpyrimidine kinase type-1; SPTR: C1XR49 Hydroxymethylpyrimidine kinase; phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase YP_003683816.1 COGs: COG0422 Thiamine biosynthesis protein ThiC; InterPro IPR002817; KEGG: ttj:TTHA0678 thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC; SPTR: C1XR48 Hydroxymethylpyrimidine synthase; TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: ThiC family; TIGRFAM: thiamine biosynthesis protein ThiC YP_003683817.1 COGs: COG2022 Uncharacterized protein of thiazole biosynthesis; InterPro IPR008867:IPR013785; KEGG: tth:TTC0317 thiazole synthase; PFAM: thiazole biosynthesis family protein; SPTR: C1XR47 Thiazole-phosphate synthase; PFAM: Thiazole biosynthesis protein ThiG YP_003683818.1 InterPro IPR003749:IPR012675:IPR016155:IPR010035; KEGG: ttj:TTHA0675 putative thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; SPTR: C1XR46 Thiamine biosynthesis protein ThiS; TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: ThiS family; TIGRFAM: thiamine biosynthesis protein ThiS YP_003683819.1 COGs: COG0352 Thiamine monophosphate synthase; InterPro IPR003733:IPR013785; KEGG: ttj:TTHA0674 thiamin-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; PRIAM: Thiamine-phosphate diphosphorylase; SPTR: C1XR45 Thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: Thiamine monophosphate synthase/TENI; TIGRFAM: thiamine-phosphate pyrophosphorylase YP_003683820.1 COGs: COG2815 conserved hypothetical protein; InterPro IPR005543; KEGG: ttj:TTHA0371 serine/threonine-protein kinase; PFAM: PASTA domain containing protein; SMART: PASTA domain containing protein; SPTR: C1XR44 Uncharacterized conserved protein; PFAM: PASTA domain YP_003683821.1 KEGG: similar to M199.5; SPTR: C1XR43 Putative uncharacterized protein YP_003683822.1 COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209; KEGG: ana:alr0996 protease; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: C1XR42 Subtilisin-like serine protease; PFAM: Subtilase family YP_003683823.1 InterPro IPR001969:IPR010916; KEGG: hypothetical protein LOC726734; SPTR: C1XR41 Putative uncharacterized protein YP_003683824.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XR40 Integrase family protein; PFAM: Integrase core domain YP_003683825.1 COGs: COG1836 membrane protein; InterPro IPR002794; KEGG: sth:STH1011 hypothetical protein; PFAM: protein of unknown function DUF92 transmembrane; SPTR: C1XR39 Predicted membrane protein, COG1836; PFAM: Integral membrane protein DUF92; TIGRFAM: conserved hypothetical protein TIGR00297 YP_003683826.1 COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase; InterProIPR006674:IPR007685:IPR004095:IPR002912:IPR 012675:IPR012676:IPR004811:IPR003607; KEGG: ttj:TTHA1717 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (ppGpp synthase); PFAM: RelA/SpoT domain protein; metal-dependent phosphohydrolase HD sub domain; TGS domain protein; amino acid-binding ACT domain protein; PRIAM: GTP diphosphokinase; SMART: metal-dependent phosphohydrolase HD region; SPTR: C1XR38 (P)ppGpp synthetase, RelA/SpoT family; TIGRFAM: RelA/SpoT family protein; PFAM: HD domain; Region found in RelA / SpoT proteins; TGS domain; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family YP_003683827.1 KEGG: ttj:TTHA1716 hypothetical protein; SPTR: C1XR37 Putative uncharacterized protein YP_003683828.1 KEGG: tth:TTC1557 hypothetical protein; SPTR: C1XR36 Putative uncharacterized protein YP_003683829.1 KEGG: tth:TTC1556 hypothetical protein; SPTR: C1XR35 Putative uncharacterized protein YP_003683830.1 COGs: COG0492 Thioredoxin reductase; InterPro IPR013027:IPR008255:IPR005982:IPR000103; KEGG: ttj:TTHA1920 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: C1XR34 Thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase YP_003683831.1 COGs: COG1505 Serine protease of the peptidase family S9A; InterPro IPR002470:IPR004106:IPR001375; KEGG: cyb:CYB_2532 prolyl oligopeptidase; PFAM: peptidase S9A prolyl oligopeptidase domain protein beta-propeller; peptidase S9 prolyl oligopeptidase active site domain protein; PRIAM: Prolyl oligopeptidase; SPTR: C1XR33 Prolyl oligopeptidase; PFAM: Prolyl oligopeptidase, N-terminal beta-propeller domain; Prolyl oligopeptidase family YP_003683832.1 COGs: COG2360 Leu/Phe-tRNA-protein transferase; InterPro IPR004616; KEGG: cyb:CYB_0905 leucyl/phenylalanyl-tRNA--protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase; PRIAM: Leucyltransferase; SPTR: C1XR32 Leucyl/phenylalanyl-tRNA--protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; PFAM: Leucyl/phenylalanyl-tRNA protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA--protein transferase YP_003683833.1 COGs: COG0612 Zn-dependent peptidase; InterProIPR011249:IPR011765:IPR007863:IPR011237:IPR 001431; KEGG: gfo:GFO_0807 zinc protease PqqL; PFAM: peptidase M16 domain protein; SPTR: C1XR31 Predicted Zn-dependent peptidase; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16) YP_003683834.1 COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR013461:IPR001270:IPR003959:IPR013093:IPR 003593:IPR004176:IPR019489; KEGG: rce:RC1_1691 ATP-dependent Clp protease ATP-binding subunit ClpA; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; SMART: AAA ATPase; SPTR: C1XR30 ATP-dependent Clp protease ATP-binding subunit clpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA domain (Cdc48 subfamily); Clp amino terminal domain; C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA YP_003683835.1 COGs: COG2127 conserved hypothetical protein; InterPro IPR003769:IPR014719; KEGG: mmr:Mmar10_1285 ATP-dependent Clp protease adaptor protein ClpS; PFAM: ATP-dependent Clp protease adaptor protein ClpS; SPTR: C1XR29 Uncharacterized conserved protein, COG2127; PFAM: ATP-dependent Clp protease adaptor protein ClpS YP_003683836.1 COGs: COG1937 conserved hypothetical protein; InterPro IPR003735; KEGG: ttj:TTHA1953 hypothetical protein; PFAM: protein of unknown function DUF156; SPTR: C1XR28 Uncharacterized conserved protein; PFAM: Uncharacterised BCR, COG1937 YP_003683837.1 KEGG: cur:cur_1817 putative Fe-S oxidoreductase; SPTR: C8SF08 TonB family protein YP_003683838.1 COGs: COG2812 DNA polymerase III gamma/tau subunits; InterPro IPR003959:IPR012763:IPR003593:IPR001270; KEGG: ttj:TTHA1952 DNA polymerase III holoenzyme tau subunit; PFAM: AAA ATPase central domain protein; PRIAM: DNA-directed DNA polymerase; SMART: AAA ATPase; SPTR: C1XR26 DNA polymerase III, subunit gamma/tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: ATPase family associated with various cellular activities (AAA); DNA polymerase III subunits gamma and tau domain III; TIGRFAM: DNA polymerase III, delta' subunit; DNA polymerase III, subunits gamma and tau YP_003683839.1 InterPro IPR011379:IPR004518; KEGG: pmn:PMN2A_0296 MazG family pyrophosphatase; PFAM: MazG nucleotide pyrophosphohydrolase; SPTR: C1XR25 MazG nucleotide pyrophosphohydrolase family protein; PFAM: MazG nucleotide pyrophosphohydrolase domain YP_003683840.1 COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: ttj:TTHA0267 oxygen-insensitive NADPH nitroreductase; PFAM: nitroreductase; SPTR: C1XR24 Nitroreductase; PFAM: Nitroreductase family YP_003683841.1 COGs: COG1989 Type II secretory pathway prepilin signal peptidase PulO and related peptidase; InterPro IPR010627:IPR000045; KEGG: ttj:TTHA0269 type IV prepilin peptidase (PilD); PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; SPTR: C1XR23 Prepilin signal peptidase PulO-like peptidase; PFAM: Bacterial Peptidase A24 N-terminal domain; Type IV leader peptidase family YP_003683842.1 SPTR: C1XR22 Putative uncharacterized protein YP_003683843.1 KEGG: ade:Adeh_0244 LigA; SPTR: P0C348 Peptide chain release factor 2; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 2 YP_003683844.1 COGs: COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; InterPro IPR013792:IPR001986:IPR005750; KEGG: tth:TTC1854 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); SPTR: C1XR20 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_003683845.1 KEGG: ttj:TTHA0139 hypothetical protein; SPTR: C1XR19 Putative uncharacterized protein YP_003683846.1 InterPro IPR002559:IPR012337; KEGG: cau:Caur_2446 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: C1XPT2 Transposase family protein; PFAM: Transposase DDE domain YP_003683847.1 COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR008258:IPR011990; KEGG: ttj:TTHA1471 putative transglycosylase; PFAM: Lytic transglycosylase catalytic; SPTR: C1XR15 Soluble lytic murein transglycosylase-like protein; PFAM: Transglycosylase SLT domain YP_003683848.1 COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: ttj:TTHA1474 hypothetical protein; PFAM: Rhomboid family protein; SPTR: C1XR14 Uncharacterized membrane protein; PFAM: Rhomboid family YP_003683849.1 KEGG: ttj:TTHA0141 hypothetical protein; SPTR: C1XR13 Putative uncharacterized protein YP_003683850.1 KEGG: tth:TTC1121 hypothetical protein; SPTR: C1XR12 Putative uncharacterized protein; PFAM: eRF1 domain 3 YP_003683851.1 COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR008978:IPR002068; KEGG: ttj:TTHA1484 hsp 20 family small heat shock protein; PFAM: heat shock protein Hsp20; SPTR: C1XR11 Heat shock protein Hsp20; PFAM: Hsp20/alpha crystallin family YP_003683852.1 COGs: COG0616 Periplasmic serine protease (ClpP class); InterPro IPR002825; KEGG: ttj:TTHA1475 hypothetical protein; PFAM: protein of unknown function DUF114; SPTR: C1XR10 ClpP class periplasmic serine protease; PFAM: Serine dehydrogenase proteinase YP_003683853.1 COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: ttj:TTHA1474 hypothetical protein; PFAM: Rhomboid family protein; SPTR: C1XR09 Uncharacterized membrane protein; PFAM: Rhomboid family YP_003683854.1 COGs: COG0475 Kef-type K+ transport systems membrane components; InterPro IPR006153; KEGG: ttj:TTHA1476 Na(+)/H(+) antiporter; PFAM: sodium/hydrogen exchanger; SPTR: C1XR08 Kef-type K+ transport system, membrane component; PFAM: Sodium/hydrogen exchanger family YP_003683855.1 COGs: COG0490 Putative regulatory ligand-binding protein related to C-terminal domains of K+ channels; InterPro IPR006037:IPR016040; KEGG: ttj:TTHA1477 hypothetical protein; PFAM: TrkA-C domain protein; SPTR: C1XR07 Predicted regulatory ligand binding protein similar to C-terminal domain of K+ channels; PFAM: TrkA-C domain YP_003683856.1 InterPro IPR019628; KEGG: tth:TTC1114 hypothetical protein; PFAM: Protein of unknown function DUF2495; SPTR: C1XR06 Putative uncharacterized protein; PFAM: Phosphate-starvation-inducible E YP_003683857.1 COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR008978:IPR002068; KEGG: tth:TTC1116 small heat shock protein; PFAM: heat shock protein Hsp20; SPTR: C1XR05 Heat shock protein Hsp20; PFAM: Hsp20/alpha crystallin family YP_003683858.1 COGs: COG3118 Thioredoxin domain-containing protein; InterProIPR017936:IPR017937:IPR012336:IPR005746:IPR 006662:IPR013766:IPR012335; KEGG: dge:Dgeo_2518 thioredoxin; PFAM: Thioredoxin domain; SPTR: C1XR04 Thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin; TIGRFAM: thioredoxin YP_003683859.1 InterPro IPR012347:IPR009078; KEGG: ttj:TTHA1486 hypothetical protein; SPTR: C1XR03 Putative uncharacterized protein; PFAM: Ferritin-like domain YP_003683860.1 InterPro IPR011637; KEGG: chl:Chy400_3122 DoxX family protein; PFAM: DoxX family protein; SPTR: C1XR02 Predicted membrane protein, COG2259; PFAM: DoxX YP_003683861.1 InterPro IPR012336:IPR002109:IPR012335; KEGG: ttr:Tter_2229 glutaredoxin; PFAM: glutaredoxin; SPTR: C1XR01 Glutaredoxin-like protein; PFAM: Glutaredoxin YP_003683862.1 COGs: COG1225 Peroxiredoxin; InterPro IPR000866:IPR017936:IPR012335:IPR012336; KEGG: ttr:Tter_2230 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: C1XR00 Peroxiredoxin; PFAM: AhpC/TSA family YP_003683863.1 COGs: COG2193 Bacterioferritin (cytochrome b1); InterPro IPR012347:IPR008331:IPR009078:IPR009040; KEGG: ttj:TTHA1482 bacterioferritin; PFAM: Ferritin Dps family protein; SPTR: C1XQZ9 Bacterioferritin (Cytochrome b1); PFAM: Ferritin-like domain YP_003683864.1 COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR004176:IPR003959:IPR013093:IPR019489:IPR 018368:IPR001270:IPR017730:IPR003593; KEGG: tth:TTC1123 endopeptidase Clp ATP-binding chain B, ClpB; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; SMART: AAA ATPase; SPTR: C1XQZ8 ATP-dependent chaperone ClpB; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB YP_003683865.1 COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; InterPro IPR000120; KEGG: bbe:BBR47_25460 putative amidase; PFAM: Amidase; SPTR: C1XQZ7 Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit; PFAM: Amidase YP_003683866.1 KEGG: AIG1 family protein; SPTR: C1XQZ6 Putative uncharacterized protein YP_003683867.1 KEGG: hypothetical protein; SPTR: C1XQZ5 Putative uncharacterized protein YP_003683868.1 KEGG: cab:CAB400 hypothetical protein; SPTR: C1XQZ4 Putative uncharacterized protein YP_003683869.1 KEGG: maq:Maqu_0473 ABC transporter related; SPTR: C1XQZ2 Putative uncharacterized protein YP_003683870.1 COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439; KEGG: hau:Haur_4945 ABC transporter related; PFAM: ABC transporter related; SPTR: C1XQZ1 ATPase component of ABC transporters with duplicated ATPase domain; PFAM: ABC transporter YP_003683871.1 COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: dfe:Dfer_3049 aldo/keto reductase; PFAM: aldo/keto reductase; SPTR: C1XQZ0 Predicted oxidoreductase similar to aryl-alcohol dehydrogenase; PFAM: Aldo/keto reductase family YP_003683872.1 COGs: COG0412 Dienelactone hydrolase; InterPro IPR006311:IPR002925; KEGG: hau:Haur_4136 carboxymethylenebutenolidase; PFAM: dienelactone hydrolase; PRIAM: Carboxymethylenebutenolidase; SPTR: C1XQY9 Dienelactone hydrolase-like enzyme; PFAM: Dienelactone hydrolase family YP_003683873.1 KEGG: ttj:TTHA1488 DafA protein (DnaK-DnaJ assembly factor A); SPTR: C1XQY8 Putative uncharacterized protein YP_003683874.1 COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR001623:IPR002939:IPR008971:IPR003095; KEGG: tth:TTC1125 chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: Q8L2F2 DnaJ; PFAM: DnaJ C terminal region; DnaJ domain YP_003683875.1 COGs: COG0576 Molecular chaperone GrpE (heat shock protein); InterPro IPR013805:IPR009012:IPR000740; KEGG: ttj:TTHA1490 GrpE protein (HSP-70 cofactor); PFAM: GrpE protein; SPTR: C1XQY5 Protein grpE; PFAM: GrpE YP_003683876.1 COGs: COG0443 Molecular chaperone; InterPro IPR013126:IPR018181:IPR012725:IPR001023; KEGG: tth:TTC1127 molecular chaperone DnaK; PFAM: Heat shock protein 70; SPTR: C1XQY4 Chaperone protein DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Hsp70 protein; TIGRFAM: chaperone protein DnaK YP_003683877.1 COGs: COG0465 ATP-dependent Zn protease; InterProIPR005936:IPR003593:IPR003960:IPR011546:IPR 003959:IPR000642; KEGG: ttj:TTHA1492 cell division protein FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; PRIAM: Microtubule-severing ATPase; SMART: AAA ATPase; SPTR: C1XQY3 Membrane protease FtsH catalytic subunit; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: FtsH Extracellular; Peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH YP_003683878.1 COGs: COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); InterPro IPR012347:IPR002177:IPR008331:IPR009078; KEGG: cyt:cce_0246 DNA starvation/stationary phase protection protein Dps; PFAM: Ferritin Dps family protein; SPTR: C1XQY2 DNA-binding ferritin-like protein (Oxidative damage protectant); PFAM: Ferritin-like domain YP_003683879.1 COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119:IPR010992:IPR020816; KEGG: ttj:TTHA1349 DNA-binding protein HU (DNA-binding protein II); PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; SPTR: C1XQY1 Bacterial nucleoid protein Hbs; PFAM: Bacterial DNA-binding protein YP_003683880.1 COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123:IPR004552; KEGG: tth:TTC0983 putative acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: C1XQY0 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases YP_003683881.1 COGs: COG1543 conserved hypothetical protein; InterPro IPR011330:IPR015293:IPR004300; KEGG: tth:TTC1540 hypothetical protein; PFAM: glycoside hydrolase family 57; Domain of unknown function DUF1957; SPTR: C1XQX9 Uncharacterized conserved protein; PFAM: Domain of unknown function (DUF1957); Glycosyl hydrolase family 57 YP_003683882.1 KEGG: hau:Haur_1667 DoxX family protein; SPTR: C1XQX8 Putative uncharacterized protein YP_003683883.1 COGs: COG0548 Acetylglutamate kinase; InterPro IPR004662:IPR001048:IPR001057:IPR011148; KEGG: tth:TTC1541 acetylglutamate/acetylaminoadipate kinase; PFAM: aspartate/glutamate/uridylate kinase; SPTR: C1XQX7 N-acetylglutamate kinase; N2-acetyl-L-aminoadipate kinase; TIGRFAM: acetylglutamate kinase; PFAM: Amino acid kinase family; TIGRFAM: acetylglutamate kinase YP_003683884.1 COGs: COG0002 Acetylglutamate semialdehyde dehydrogenase; InterPro IPR000534:IPR012280:IPR016040:IPR000706; KEGG: tth:TTC1542 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; PRIAM: N-acetyl-gamma-glutamyl-phosphate reductase; SPTR: C1XQX6 N2-acetyl-L-aminoadipate semialdehyde dehydrogenase; N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, common form YP_003683885.1 InterPro IPR002781; KEGG: tmz:Tmz1t_1272 protein of unknown function DUF81; PFAM: protein of unknown function DUF81; SPTR: C1XQX5 Predicted permease; PFAM: Sulfite exporter TauE/SafE YP_003683886.1 COGs: COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); InterProIPR011870:IPR016185:IPR013651:IPR004666:IPR 011761; KEGG: ttj:TTHA1907 lysine biosynthesis enzyme LysX; PFAM: RimK domain protein ATP-grasp; SPTR: C1XQX4 L-2-aminoadipate N-acetyltransferase; TIGRFAM: lysine biosynthesis enzyme LysX; alpha-L-glutamate ligase, RimK family; PFAM: RimK-like ATP-grasp domain; TIGRFAM: Lysine biosynthesis enzyme LysX; alpha-L-glutamate ligases, RimK family YP_003683887.1 InterPro IPR005906; KEGG: ddr:Deide_13440 putative lysine biosynthesis protein LysW; SPTR: C1XQX3 Lysine biosynthesis protein LysW; TIGRFAM: lysine biosynthesis protein LysW; TIGRFAM: lysine biosynthesis protein LysW YP_003683888.1 KEGG: tth:TTC1545 hypothetical protein; SPTR: C1XQX2 Putative uncharacterized protein; TIGRFAM: lysine biosynthesis protein LysW YP_003683889.1 COGs: COG0066 3-isopropylmalate dehydratase small subunit; InterPro IPR000573:IPR015928:IPR011827; KEGG: tth:TTC1546 homoaconitate hydratase small subunit; PFAM: aconitate hydratase domain protein; SPTR: C1XQX1 Homoaconitase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase C-terminal domain; TIGRFAM: 3-isopropylmalate dehydratase, small subunit YP_003683890.1 COGs: COG0065 3-isopropylmalate dehydratase large subunit; InterProIPR001030:IPR015931:IPR015932:IPR018136:IPR 011826:IPR006251; KEGG: tth:TTC1547 3-isopropylmalate dehydratase large subunit; PFAM: aconitate hydratase domain protein; SPTR: C1XQX0 Homoaconitase large subunit; TIGRFAM: 3-isopropylmalate dehydratase; homoaconitate hydratase family protein; PFAM: Aconitase family (aconitate hydratase); TIGRFAM: 3-isopropylmalate dehydratase, large subunit; homoaconitate hydratase family protein YP_003683891.1 InterPro IPR005357; KEGG: ttj:TTHA1912 hypothetical protein; PFAM: protein of unknown function UPF0150; SPTR: C1XQW9 Uncharacterized conserved protein; PFAM: Uncharacterised protein family (UPF0150) YP_003683892.1 InterPro IPR012933; KEGG: ttj:TTHA1913 hypothetical protein; PFAM: YcfA family protein; SPTR: C1XQW8 YcfA-like protein; PFAM: YcfA-like protein YP_003683893.1 COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891:IPR002034:IPR013785; KEGG: hypothetical protein; PFAM: pyruvate carboxyltransferase; SPTR: C1XQW7 Isopropylmalate/homocitrate/citramalate synthase; PFAM: HMGL-like YP_003683894.1 COGs: COG0020 Undecaprenyl pyrophosphate synthase; InterPro IPR001441:IPR018520; KEGG: ttj:TTHA1915 undecaprenyl pyrophosphate synthetase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; PRIAM: Di-trans,poly-cis-decaprenylcistransferase; SPTR: C1XQW6 Undecaprenyl pyrophosphate synthetase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Putative undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase YP_003683895.1 COGs: COG0164 Ribonuclease HII; InterPro IPR012337:IPR001352; KEGG: tth:TTC1788 ribonuclease HII; PFAM: ribonuclease HII/HIII; PRIAM: Ribonuclease H; SPTR: C1XQW5 Ribonuclease; PFAM: Ribonuclease HII YP_003683896.1 KEGG: ttj:TTHA0197 S-layer-like protein; SPTR: C1XQW4 Putative uncharacterized protein YP_003683897.1 COGs: COG4663 TRAP-type mannitol/chloroaromatic compound transport system periplasmic component; InterPro IPR018389:IPR006311; KEGG: tth:TTC1790 C4-dicarboxylate-binding protein; PFAM: Extracellular solute-binding protein, family 7; SPTR: C1XQW3 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein, family 7; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003683898.1 KEGG: bbr:BB4996 ABC transporter ATP-binding protein; SPTR: C1XQW2 Putative uncharacterized protein YP_003683899.1 COGs: COG4664 TRAP-type mannitol/chloroaromatic compound transport system large permease component; InterPro IPR010656:IPR004681; KEGG: dar:Daro_0600 TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; SPTR: C1XQW1 TRAP transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit YP_003683900.1 COGs: COG4665 TRAP-type mannitol/chloroaromatic compound transport system small permease component; InterPro IPR007387; KEGG: tth:TTC1792 tripartite transporter, small subunit; PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; SPTR: C1XQW0 TRAP-type mannitol/chloroaromatic compound transport system, small permease component; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component YP_003683901.1 COGs: COG2211 Na+/melibiose symporter and related transporter; InterPro IPR011701:IPR005829:IPR016196; KEGG: ttj:TTHA0193 hypothetical protein; PFAM: major facilitator superfamily MFS_1; SPTR: C1XQV9 Major Facilitator Superfamily transporter; PFAM: Major Facilitator Superfamily YP_003683902.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XW51 Integrase family protein; PFAM: Integrase core domain YP_003683903.1 InterPro IPR002772:IPR017853; KEGG: mpd:MCP_1311 beta-glucosidase; PFAM: glycoside hydrolase family 3 domain protein; SPTR: C1XY88 Beta-glucosidase-like glycosyl hydrolase; PFAM: Glycosyl hydrolase family 3 C terminal domain YP_003683904.1 COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761:IPR010982; KEGG: dge:Dgeo_2697 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; SPTR: C1XY87 Transcriptional regulator, LacI family; PFAM: Bacterial regulatory proteins, lacI family; family YP_003683905.1 COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR013022:IPR012307; KEGG: ttr:Tter_2266 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase domain protein TIM barrel; SPTR: C1XY86 Sugar phosphate isomerase/epimerase; PFAM: Xylose isomerase-like TIM barrel YP_003683906.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR016040:IPR000683:IPR004104; KEGG: ttr:Tter_2265 oxidoreductase domain protein; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: C1XY85 Predicted dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain YP_003683907.1 KEGG: hau:Haur_3488 hypothetical protein; SPTR: C1XY82 Putative uncharacterized protein; PFAM: Mycothiol maleylpyruvate isomerase N-terminal domain YP_003683908.1 KEGG: copB2; WD40 repeat-containing protein; SPTR: C1XY81 Putative uncharacterized protein YP_003683909.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198:IPR016040:IPR002347; KEGG: dge:Dgeo_2403 gluconate 5-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: C1XY80 Putative uncharacterized protein; PFAM: short chain dehydrogenase YP_003683910.1 COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterProIPR016040:IPR013149:IPR011032:IPR013154:IPR 014188; KEGG: rrs:RoseRS_3205 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; SPTR: C1XY77 Putative quinone oxidoreductase, YhdH/YhfP family; TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: putative quinone oxidoreductase, YhdH/YhfP family YP_003683911.1 KEGG: dba:Dbac_3082 hypothetical protein; SPTR: C1XY76 Putative uncharacterized protein YP_003683912.1 InterPro IPR004360; KEGG: sro:Sros_5397 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: C1XY75 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_003683913.1 COGs: COG1290 Cytochrome b subunit of the bc complex; InterPro IPR016174:IPR016175:IPR005797:IPR005798; KEGG: tth:TTC1567 menaquinol-cytochrome c reductase cytochrome b subunit; PFAM: Cytochrome b/b6 domain; SPTR: C1XY74 Cytochrome b subunit of the bc complex; PFAM: Cytochrome b(C-terminal)/b6/petD YP_003683914.1 COGs: COG0723 Rieske Fe-S protein; InterPro IPR017941:IPR005805; KEGG: ttj:TTHA1931 quinol-cytochrome c reductase, Rieske iron-sulfur subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: C1XY73 Rieske Fe-S protein; PFAM: Rieske [2Fe-2S] domain YP_003683915.1 KEGG: ttj:TTHA1932 C-type cytochrome; SPTR: C1XY72 Putative uncharacterized protein YP_003683916.1 InterPro IPR009056:IPR003088; KEGG: tth:TTC1570 cytochrome c; PFAM: cytochrome c class I; SPTR: C1XY71 Cytochrome c, mono-and diheme variants family; PFAM: Cytochrome c YP_003683917.1 COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307:IPR013022:IPR018062; KEGG: ttj:TTHA1934 hypothetical protein; PFAM: Xylose isomerase domain protein TIM barrel; SPTR: C1XY70 Sugar phosphate isomerase/epimerase; PFAM: Xylose isomerase-like TIM barrel YP_003683918.1 COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: tth:TTC1573 glycerol-3-phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: C1XY69 Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: Bacterial extracellular solute-binding protein YP_003683919.1 COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: ttj:TTHA1877 sugar ABC transporter, periplasmic sugar-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: C1XY68 Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: Bacterial extracellular solute-binding protein YP_003683920.1 COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: ttj:TTHA1886 ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XY67 Carbohydrate ABC transporter membrane protein 2, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component YP_003683921.1 COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: ttj:TTHA1827 sugar ABC transporter permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XY66 Carbohydrate ABC transporter membrane protein 1, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component YP_003683922.1 KEGG: ttj:TTHA1826 hypothetical protein; SPTR: C1XY65 Putative uncharacterized protein YP_003683923.1 KEGG: tth:TTC1474 putative cytoplasmic protein; SPTR: C1XY64 Putative uncharacterized protein YP_003683924.1 COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013342; KEGG: tth:TTC1473 muconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing protein; SPTR: C1XY63 Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YP_003683925.1 COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR005833:IPR006439:IPR006402:IPR005834; KEGG: gvi:glr2345 hypothetical protein; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: C1XY62 Haloacid dehalogenase superfamily enzyme, subfamily IA; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E YP_003683926.1 InterPro IPR011701:IPR016196; KEGG: ttj:TTHA1822 transporter; PFAM: major facilitator superfamily MFS_1; SPTR: C1XY61 Major Facilitator Superfamily transporter; PFAM: Major Facilitator Superfamily YP_003683927.1 COGs: COG0520 Selenocysteine lyase; InterPro IPR015424:IPR000192:IPR015421; KEGG: sus:Acid_2875 kynureninase; PFAM: aminotransferase class V; SPTR: C1XY60 Selenocysteine lyase; PFAM: Aminotransferase class-V; TIGRFAM: kynureninase YP_003683928.1 COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR011109:IPR006119; KEGG: cno:NT01CX_2203 DNA recombinase, putative; PFAM: Resolvase domain; Recombinase; SMART: Resolvase domain; SPTR: C1XY58 Site-specific recombinase, DNA invertase Pin; PFAM: Recombinase; Resolvase, N terminal domain YP_003683929.1 InterPro IPR001387:IPR010982; KEGG: dge:Dgeo_1366 putative prophage repressor; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: C1XY57 Helix-turn-helix protein; PFAM: Helix-turn-helix YP_003683930.1 InterPro IPR001387:IPR010982; KEGG: pfs:PFLU1410 putative DNA-binding regulatory protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: C1XY56 Predicted transcription factor similar to MBF1; PFAM: Helix-turn-helix YP_003683931.1 KEGG: rmu:RMDY18_19770 tRNA nucleotidyltransferase/poly(A) polymerase; SPTR: C1XY55 Putative uncharacterized protein YP_003683932.1 COGs: COG3378 ATPase; InterPro IPR014818:IPR006500:IPR014015; KEGG: bld:BLi03629 hypothetical protein; PFAM: primase P4; SMART: primase P4; SPTR: C1XY54 Phage/plasmid primase, P4 family, C-terminal domain; TIGRFAM: phage/plasmid primase, P4 family; PFAM: D5 N terminal like; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type; phage/plasmid primase, P4 family, C-terminal domain YP_003683933.1 KEGG: bpt:Bpet3866 hypothetical protein; SPTR: C1XY53 Putative uncharacterized protein YP_003683934.1 KEGG: mjl:Mjls_4615 radical SAM domain-containing protein; SPTR: C1XY52 Putative uncharacterized protein YP_003683935.1 SPTR: C1XY51 Putative uncharacterized protein YP_003683936.1 KEGG: ppg:PputGB1_1481 ribonuclease; SPTR: C1XY50 Putative uncharacterized protein YP_003683937.1 KEGG: dge:Dgeo_2953 hypothetical protein; SPTR: C1XY49 Putative uncharacterized protein YP_003683938.1 KEGG: nwi:Nwi_0374 hypothetical protein; SPTR: C1XY48 Putative uncharacterized protein YP_003683939.1 KEGG: rru:Rru_A0072 heat shock protein 90; SPTR: C1XY47 Putative uncharacterized protein YP_003683940.1 KEGG: met:M446_0317 beta-ketoacyl synthase; SPTR: C1XY46 Putative uncharacterized protein YP_003683941.1 KEGG: dge:Dgeo_2963 hypothetical protein; SPTR: C1XY45 Putative uncharacterized protein YP_003683942.1 KEGG: dge:Dgeo_2956 hypothetical protein; SPTR: C1XL53 Putative uncharacterized protein YP_003683943.1 KEGG: hypothetical protein; K05747 Wiskott-Aldrich syndrome protein; SPTR: C1XY43 Putative uncharacterized protein YP_003683944.1 InterPro IPR007039; KEGG: bpt:Bpet4896 branched-chain amino acid ABC transporter, permease protein; PFAM: Conjugal transfer protein TrbC; SPTR: C1XY42 TrbC/VIRB2 family protein; PFAM: TrbC/VIRB2 family YP_003683945.1 KEGG: hna:Hneap_1042 phosphoesterase PA-phosphatase related protein; SPTR: C1XY41 Putative uncharacterized protein YP_003683946.1 COGs: COG3451 Type IV secretory pathway VirB4 protein; KEGG: dge:Dgeo_2948 type IV secretory pathway VirB4 component, ATPase TraC; SPTR: C1XY40 Putative uncharacterized protein; PFAM: Domain of unknown function DUF87; F pilus assembly Type-IV secretion system for plasmid transfer; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003683947.1 KEGG: similar to KIAA0655 protein; SPTR: C1XY39 Putative uncharacterized protein YP_003683948.1 KEGG: dge:Dgeo_2950 TrbL/VirB6 plasmid conjugal transfer protein; SPTR: C1XY38 Putative uncharacterized protein YP_003683949.1 KEGG: SORBIDRAFT_10g010850; hypothetical protein; SPTR: C1XY37 Putative uncharacterized protein YP_003683950.1 COGs: COG3505 Type IV secretory pathway VirD4 protein; KEGG: dge:Dgeo_2951 ATPase involved in conjugal plasmid transfer TraG; SPTR: C1XY36 Type IV secretory pathway, VirD4 component; PFAM: TraG/TraD family YP_003683951.1 KEGG: lch:Lcho_2084 tRNA 2-selenouridine synthase; SPTR: C1XY35 Putative uncharacterized protein YP_003683952.1 KEGG: ttr:Tter_0640 hypothetical protein; SPTR: C1XY34 Putative uncharacterized protein YP_003683953.1 COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR008258; KEGG: dge:Dgeo_2959 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase catalytic; SPTR: C1XY33 Soluble lytic murein transglycosylase-like protein; PFAM: Transglycosylase SLT domain YP_003683954.1 COGs: COG3854 conserved hypothetical protein; InterPro IPR003593; KEGG: dge:Dgeo_2960 AAA ATPase; SMART: AAA ATPase; SPTR: C1XY32 Uncharacterized conserved protein; PFAM: Molybdopterin guanine dinucleotide synthesis protein B; TIGRFAM: stage III sporulation protein AA YP_003683955.1 KEGG: sus:Acid_6604 heat repeat-containing PBS lyase; SPTR: C1XY31 Putative uncharacterized protein YP_003683956.1 KEGG: rhi:NGR_b02670 beta-galactosidase; SPTR: C1XY30 Putative uncharacterized protein YP_003683957.1 KEGG: rru:Rru_A2307 twin-arginine translocation pathway signal; SPTR: C1XY29 Putative uncharacterized protein YP_003683958.1 KEGG: kra:Krad_0565 hypothetical protein; SPTR: C1XY28 Putative uncharacterized protein YP_003683959.1 KEGG: pjd:Pjdr2_5999 fumarate reductase/succinate dehydrogenase flavoprotein domain protein; SPTR: C1XY27 Putative uncharacterized protein YP_003683960.1 InterPro IPR001119; KEGG: ttj:TTHA1864 S-layer protein-related protein; PFAM: S-layer domain protein; SPTR: C1XY26 Putative S-layer protein; PFAM: S-layer homology domain; Prefoldin subunit YP_003683961.1 KEGG: gme:Gmet_0591 hypothetical protein; SPTR: C1XY25 Putative uncharacterized protein YP_003683962.1 KEGG: mpo:Mpop_0477 binding-protein-dependent transport systems inner membrane component; SPTR: C1XY24 Putative uncharacterized protein YP_003683963.1 KEGG: gsu:GSU2639 hypothetical protein; SPTR: C1XY23 Putative uncharacterized protein YP_003683964.1 KEGG: kcr:Kcr_1474 glycoprotease family metalloendopeptidase; SPTR: C1XY22 Putative uncharacterized protein YP_003683965.1 KEGG: hypothetical protein; SPTR: C1XY21 Putative uncharacterized protein YP_003683966.1 InterPro IPR013324:IPR007624:IPR013325; KEGG: afo:Afer_1208 RNA polymerase, sigma 70 subunit, RpoD subfamily; PFAM: sigma-70 region 3 domain protein; SPTR: C1XY20 RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 3 YP_003683967.1 KEGG: rmr:Rmar_0140 WD40 domain protein beta propeller; SPTR: C1XY19 Putative uncharacterized protein YP_003683968.1 InterPro IPR012337:IPR001584:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XY18 Integrase family protein; PFAM: Integrase core domain YP_003683969.1 KEGG: pat:Patl_3476 beta-lactamase-like; SPTR: C1XY17 Putative uncharacterized protein YP_003683970.1 COGs: COG5654 conserved hypothetical protein; InterPro IPR014914; KEGG: ajs:Ajs_0567 hypothetical protein; PFAM: RES domain protein; SPTR: C1XY16 Uncharacterized conserved protein; PFAM: RES domain YP_003683971.1 COGs: COG5642 conserved hypothetical protein; InterPro IPR011979; KEGG: nmu:Nmul_A0917 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: C1XY15 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2384); TIGRFAM: conserved hypothetical protein TIGR02293 YP_003683972.1 KEGG: hypothetical protein; SPTR: C1XY14 Putative uncharacterized protein YP_003683973.1 InterPro IPR006076; KEGG: sha:SH2006 hypothetical protein; PFAM: FAD dependent oxidoreductase; SPTR: C1XY12 Putative uncharacterized protein YP_003683974.1 KEGG: hypothetical protein; SPTR: C1XY11 Putative uncharacterized protein YP_003683975.1 KEGG: hypothetical protein LOC771994; SPTR: C1XY10 Putative uncharacterized protein YP_003683976.1 COGs: COG4586 ABC-type uncharacterized transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: scl:sce6750 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XY09 ABC-type uncharacterized transport system, ATPase component; PFAM: ABC transporter YP_003683977.1 COGs: COG4587 ABC-type uncharacterized transport system permease component; InterPro IPR010390; KEGG: mxa:MXAN_6002 putative ABC transporter, permease protein; PFAM: protein of unknown function DUF990; SPTR: C1XY08 ABC-type uncharacterized transport system, permease component; PFAM: Protein of unknown function (DUF990) YP_003683978.1 COGs: COG3694 ABC-type uncharacterized transport system permease component; InterPro IPR010390; KEGG: ssa:SSA_1987 hypothetical protein; PFAM: protein of unknown function DUF990; SPTR: C1XY07 ABC-type uncharacterized transport system, permease component; PFAM: Protein of unknown function (DUF990) YP_003683979.1 COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395:IPR005399; KEGG: ttj:TTHA0027 potassium channel, beta subunit (oxidoreductase); PFAM: aldo/keto reductase; SPTR: C1XY06 Predicted oxidoreductase similar to aryl-alcohol dehydrogenase; PFAM: Aldo/keto reductase family; TIGRFAM: voltage-dependent potassium channel beta subunit, animal YP_003683980.1 KEGG: bcl:ABC0267 aminoglycoside nucleotidyltransferase; SPTR: C1XY05 Putative uncharacterized protein; PFAM: KNTase C-terminal domain YP_003683981.1 KEGG: swi:Swit_4764 2-octaprenylphenol hydroxylase; SPTR: C1XY04 Putative uncharacterized protein YP_003683982.1 COGs: COG2124 Cytochrome P450; InterPro IPR001128:IPR017972:IPR002397; KEGG: rrs:RoseRS_0765 cytochrome P450; SPTR: C1XL10 Cytochrome P450; PFAM: Cytochrome P450 YP_003683983.1 KEGG: mpt:Mpe_B0302 hypothetical protein; SPTR: C1XXZ6 Putative uncharacterized protein YP_003683984.1 KEGG: aap:NT05HA_1187 hypothetical protein; SPTR: C1XXZ5 Putative uncharacterized protein YP_003683985.1 KEGG: tth:TT_P0207 hypothetical protein; SPTR: C1XXZ4 Putative uncharacterized protein YP_003683986.1 InterPro IPR002716; KEGG: tth:TT_P0206 hypothetical protein; PFAM: PilT protein domain protein; SPTR: C1XXZ3 Predicted nucleic acid-binding protein, contains PIN domain; PFAM: PIN domain YP_003683987.1 KEGG: smf:Smon_0964 UvrD/REP helicase; SPTR: C1XXZ2 Putative uncharacterized protein YP_003683988.1 KEGG: ami:Amir_2422 transcriptional regulator, TetR family; SPTR: C1XXZ1 Putative uncharacterized protein YP_003683989.1 KEGG: rmr:Rmar_2859 hypothetical protein; SPTR: C1XXZ0 Putative uncharacterized protein YP_003683990.1 KEGG: nfa:nfa22070 putative mevalonate kinase; SPTR: C1XXY9 Putative uncharacterized protein YP_003683991.1 KEGG: adg:Adeg_0683 hypothetical protein; SPTR: C1XXY8 Putative uncharacterized protein YP_003683992.1 KEGG: sde:Sde_1879 condensin subunit Smc; SPTR: C1XXY7 Putative uncharacterized protein YP_003683993.1 KEGG: mch:Mchl_0063 multi-sensor hybrid histidine kinase; SPTR: C1XXY6 Putative uncharacterized protein YP_003683994.1 KEGG: reu:Reut_B3844 regulatory protein, LuxR; SPTR: C1XXY5 Putative uncharacterized protein YP_003683995.1 KEGG: mse:Msed_0957 hypothetical protein; SPTR: C1XXY4 Putative uncharacterized protein YP_003683996.1 KEGG: cyc:PCC7424_1491 chaperone DnaJ domain-containing protein; SPTR: C1XXY3 Putative uncharacterized protein YP_003683997.1 KEGG: sro:Sros_7925 putative transcriptional regulator, XRE family; SPTR: C1XXY2 Putative uncharacterized protein YP_003683998.1 KEGG: dyb-1; dystrobrevin alpha; SPTR: C1XXY1 Putative uncharacterized protein YP_003683999.1 COGs: COG1484 DNA replication protein; InterPro IPR003593; KEGG: aac:Aaci_1803 DNA replication protein-like protein; SMART: AAA ATPase; SPTR: C1XXY0 Putative uncharacterized protein; PFAM: IstB-like ATP binding protein YP_003684000.1 COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR001959:IPR010095; KEGG: rmr:Rmar_2881 transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; putative transposase IS891/IS1136/IS1341 family; SPTR: C1XXX9 Transposase, IS605 OrfB family, central region; TIGRFAM: transposase, IS605 OrfB family; PFAM: Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region; transposase, putative, N-terminal domain YP_003684001.1 InterPro IPR007527; KEGG: app:CAP2UW1_2483 zinc finger SWIM domain protein; PFAM: zinc finger SWIM domain protein; SPTR: C1XXX7 SWIM zinc finger-containing protein; PFAM: SWIM zinc finger YP_003684002.1 COGs: COG4712 conserved hypothetical protein; KEGG: rmr:Rmar_2527 RAD52/22 double-strand break repair protein; SPTR: C1XXX6 Putative uncharacterized protein; PFAM: Rad52/22 family double-strand break repair protein YP_003684003.1 COGs: COG3587 Restriction endonuclease; InterPro IPR006935; KEGG: drm:Dred_0515 type III restriction enzyme, res subunit; PFAM: type III restriction protein res subunit; PRIAM: Type III site-specific deoxyribonuclease; SPTR: C1XXX5 Restriction endonuclease; PFAM: Type III restriction enzyme, res subunit YP_003684004.1 COGs: COG2189 Adenine specific DNA methylase Mod; InterPro IPR002941:IPR002052:IPR002295; KEGG: msl:Msil_1946 site-specific DNA-methyltransferase (adenine-specific); PFAM: DNA methylase N-4/N-6 domain protein; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: C1XXX4 Adenine specific DNA methylase Mod; PFAM: DNA methylase YP_003684005.1 InterPro IPR002559; KEGG: tth:TT_P0158 hypothetical protein; PFAM: transposase IS4 family protein; SPTR: C1XPN1 Transposase family protein; PFAM: Transposase DDE domain YP_003684006.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR013762:IPR002104:IPR011010; KEGG: cak:Caul_5294 integrase family protein; PFAM: integrase family protein; SPTR: C1XXX1 Site-specific recombinase XerD; PFAM: Phage integrase family YP_003684007.1 COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits; InterPro IPR014021; KEGG: rxy:Rxyl_1790 superfamily I DNA/RNA helicase; SPTR: C1XXX0 Putative uncharacterized protein YP_003684008.1 COGs: COG0863 DNA modification methylase; InterPro IPR002941:IPR017985:IPR001091; KEGG: rme:Rmet_2670 DNA methylase N-4/N-6; PFAM: DNA methylase N-4/N-6 domain protein; SPTR: C1XXW9 DNA modification methylase; PFAM: DNA methylase YP_003684009.1 KEGG: bbt:BBta_2578 ABC transporter permease YP_003684010.1 InterPro IPR001367; KEGG: scl:sce2960 protein kinase; PFAM: iron dependent repressor; SPTR: C1XXW8 Iron dependent repressor-like protein; PFAM: Iron dependent repressor, N-terminal DNA binding domain YP_003684011.1 KEGG: pgn:PGN_1360 probable oxidoreductase; SPTR: C1XXW7 Putative uncharacterized protein YP_003684012.1 COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR014016:IPR000212; KEGG: cyb:CYB_0564 UvrD/Rep family helicase; PFAM: UvrD/REP helicase; SPTR: C1XXW6 DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase YP_003684013.1 COGs: COG1525 Micrococcal nuclease (thermonuclease) homologs; InterPro IPR006021:IPR008613:IPR016071; KEGG: sal:Sala_0134 excalibur; PFAM: Excalibur domain protein; nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); SPTR: C1XXW5 Micrococcal nuclease-like nuclease (Fragment); PFAM: Excalibur calcium-binding domain; Staphylococcal nuclease homologue YP_003684014.1 KEGG: Spnb5; spectrin beta 5; K06115 spectrin beta; SPTR: B7ABP5 Putative uncharacterized protein YP_003684015.1 KEGG: xac:XAC0260 hypothetical protein; SPTR: C1XWM8 Putative uncharacterized protein YP_003684016.1 InterPro IPR020051:IPR000415; KEGG: xca:xccb100_0264 putative nitroreductase; SPTR: C1XWM7 Putative uncharacterized protein; TIGRFAM: SagB-type dehydrogenase domain; PFAM: Nitroreductase family; TIGRFAM: SagB-type dehydrogenase domain YP_003684017.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: kol:Kole_1341 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XWM6 ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter YP_003684018.1 InterPro IPR013525; KEGG: kra:Krad_0671 ABC-2 type transporter; PFAM: ABC-2 type transporter; SPTR: C1XWM5 ABC-2 type transporter; PFAM: ABC-2 type transporter YP_003684019.1 InterPro IPR001867; KEGG: ami:Amir_1088 putative phytochrome sensor protein; PFAM: transcriptional regulator domain protein; SMART: transcriptional regulator domain protein; SPTR: C1XWM4 Transcriptional regulatory protein YP_003684020.1 COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease; InterPro IPR004680:IPR000802; KEGG: npu:Npun_F4779 citrate transporter; PFAM: Citrate transporter; SPTR: C1XWM3 Na+/H+ antiporter NhaD-like permease; PFAM: Citrate transporter YP_003684021.1 InterPro IPR019239; KEGG: gvi:gsl2900 hypothetical protein; PFAM: Protein of unknown function DUF2191; SPTR: C1XWM1 Uncharacterized conserved protein (DUF2191)/integrase family protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2191) YP_003684022.1 COGs: COG1487 nucleic acid-binding protein contains PIN domain; InterPro IPR002716; KEGG: geo:Geob_2808 PilT protein domain protein; PFAM: PilT protein domain protein; SPTR: C1XWM0 Predicted nucleic acid-binding protein, contains PIN domain; PFAM: PIN domain YP_003684023.1 COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR001482:IPR006321:IPR003593; KEGG: ttj:TTHA0365 type IV pilus assembly protein, pilus retraction protein PilT; PFAM: type II secretion system protein E; SMART: AAA ATPase; SPTR: C1XWL5 Pilus retraction ATPase PilT; TIGRFAM: twitching motility protein; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT YP_003684024.1 COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR007831:IPR001482; KEGG: ttj:TTHA0364 type IV pilus assembly protein PilF; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SPTR: C1XWL4 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain YP_003684025.1 COGs: COG2179 hydrolase of the HAD superfamily; InterPro IPR010021:IPR006549:IPR019001; KEGG: dra:DR_1965 hypothetical protein; PFAM: Protein of unknown function DUF2010; SPTR: C1XWL3 HAD phosphatase subfamily IIIA; TIGRFAM: HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; hydrolase, HAD-superfamily, subfamily IIIA; TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; HAD superfamily (subfamily IIIA) phosphatase, TIGR01668 YP_003684026.1 COGs: COG1496 conserved hypothetical protein; InterPro IPR003730:IPR011324; KEGG: ttj:TTHA0362 hypothetical protein; PFAM: protein of unknown function DUF152; SPTR: C1XWL2 Putative uncharacterized protein; PFAM: Multi-copper polyphenol oxidoreductase laccase; TIGRFAM: conserved hypothetical protein TIGR00726 YP_003684027.1 InterPro IPR016942; KEGG: ttj:TTHA0337 hypothetical protein; SPTR: C1XWL1 Putative uncharacterized protein YP_003684028.1 COGs: COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; InterPro IPR004588:IPR016425:IPR011005; KEGG: ttj:TTHA0305 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PFAM: IspG family protein; PRIAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; SPTR: C1XWL0 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase YP_003684029.1 COGs: COG3227 Zinc metalloprotease (elastase); InterPro IPR013856:IPR001570; KEGG: pfs:PFLU4216 putative metalloprotease; PFAM: peptidase M4 thermolysin; Peptidase M4 thermolysin; SPTR: C1XWK9 Zinc metalloprotease (Elastase); PFAM: Thermolysin metallopeptidase, alpha-helical domain; Thermolysin metallopeptidase, catalytic domain YP_003684030.1 KEGG: mxa:MXAN_4012 hypothetical protein; SPTR: C1XWK8 Putative uncharacterized protein YP_003684031.1 COGs: COG2939 Carboxypeptidase C (cathepsin A); InterPro IPR001563; KEGG: chl:Chy400_1407 peptidase S10 serine carboxypeptidase; PFAM: peptidase S10 serine carboxypeptidase; SPTR: C1XWK7 Carboxypeptidase C (Cathepsin A); PFAM: Serine carboxypeptidase YP_003684032.1 COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family; InterPro IPR009002:IPR012349:IPR002563; KEGG: ddr:Deide_02110 hypothetical protein; PFAM: flavin reductase domain protein FMN-binding; SMART: flavin reductase domain protein FMN-binding; SPTR: C1XWK6 Conserved protein of DIM6/NTAB family, COG1853; PFAM: Flavin reductase like domain YP_003684033.1 COGs: COG0400 esterase; InterPro IPR003140; KEGG: rxy:Rxyl_1054 phospholipase/carboxylesterase; PFAM: phospholipase/Carboxylesterase; SPTR: C1XWK5 Predicted esterase; PFAM: Phospholipase/Carboxylesterase YP_003684034.1 InterPro IPR004360; KEGG: rmr:Rmar_1384 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: C1XWK4 Lactoylglutathione lyase-like lyase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_003684035.1 InterPro IPR012336:IPR002109:IPR012335; KEGG: ttr:Tter_2229 glutaredoxin; PFAM: glutaredoxin; SPTR: C1XWK3 Glutaredoxin; PFAM: Glutaredoxin YP_003684036.1 COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: tth:TTC0450 protein YceI; PFAM: YceI family protein; SPTR: P83815 Lipid binding protein; PFAM: YceI-like domain YP_003684037.1 COGs: COG1733 transcriptional regulator protein; InterPro IPR001845:IPR002577; KEGG: ttj:TTHA0981 hypothetical protein; PFAM: helix-turn-helix HxlR type; SMART: regulatory protein ArsR; SPTR: C1XWK0 Predicted transcriptional regulator; PFAM: HxlR-like helix-turn-helix YP_003684038.1 COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: rer:RER_56950 HxlR family transcriptional regulator; PFAM: helix-turn-helix HxlR type; SPTR: C1XWJ9 Predicted transcriptional regulator; PFAM: HxlR-like helix-turn-helix YP_003684039.1 COGs: COG0459 Chaperonin GroEL (HSP60 family); InterPro IPR001844:IPR002423:IPR018370; KEGG: ttj:TTHA0271 chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; SPTR: C1XWJ8 60 kDa chaperonin; TIGRFAM: chaperonin GroEL; PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL YP_003684040.1 COGs: COG0234 Co-chaperonin GroES (HSP10); InterPro IPR001476:IPR011032:IPR020818:IPR018369; KEGG: ttj:TTHA0272 co-chaperonin GroES; PFAM: Chaperonin Cpn10; SMART: chaperonin Cpn10; SPTR: C1XWJ7 10 kDa chaperonin; PFAM: Chaperonin 10 Kd subunit YP_003684041.1 COGs: COG0566 rRNA methylase; InterPro IPR013123:IPR001537; KEGG: ttj:TTHA0275 RNA 2'-O ribose methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; SPTR: C1XWJ6 rRNA methylase; PFAM: SpoU rRNA Methylase family; RNA 2'-O ribose methyltransferase substrate binding YP_003684042.1 COGs: COG5146 Pantothenate kinase acetyl-CoA regulated; InterPro IPR008040:IPR011602; KEGG: gau:GAU_3146 hypothetical protein; PFAM: Fumble domain protein; Hydantoinaseoxoprolinase domain protein; SPTR: C1XWJ5 Pantothenate kinase, acetyl-CoA regulated; PFAM: Fumble; TIGRFAM: pantothenate kinase, eukaryotic/staphyloccocal type YP_003684043.1 KEGG: tth:TTC1599 hypothetical protein; SPTR: C1XWJ4 Putative uncharacterized protein YP_003684044.1 COGs: COG1042 Acyl-CoA synthetase (NDP forming); InterProIPR016040:IPR016102:IPR003781:IPR016181:IPR 000182; KEGG: tth:TTC1711 6-carboxyhexanoate-CoA ligase; PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; SMART: CoA-binding domain protein; SPTR: C1XWJ3 Acyl-CoA synthetase (NDP forming); PFAM: CoA binding domain; Acetyltransferase (GNAT) family YP_003684045.1 InterPro IPR002035; KEGG: azo:azo2864 hypothetical protein; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: C1XWJ2 von Willebrand factor type A-like protein; PFAM: von Willebrand factor type A domain YP_003684046.1 COGs: COG0166 Glucose-6-phosphate isomerase; InterPro IPR018189:IPR001672; KEGG: ttj:TTHA0277 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI); SPTR: C1XWJ1 Glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase YP_003684047.1 InterPro IPR002934; KEGG: gem:GM21_0606 DNA polymerase beta domain protein region; PFAM: DNA polymerase beta domain protein region; SPTR: C1XWJ0 Nucleotidyltransferase family protein; PFAM: Nucleotidyltransferase domain YP_003684048.1 InterPro IPR007842; KEGG: ttj:TTHA0498 hypothetical protein; PFAM: HEPN domain protein; SPTR: C1XWI9 HEPN domain-containing protein; PFAM: HEPN domain YP_003684049.1 COGs: COG1274 Phosphoenolpyruvate carboxykinase (GTP); InterPro IPR008209:IPR008210:IPR013035:IPR018091; KEGG: rrs:RoseRS_2496 phosphoenolpyruvate carboxykinase; PFAM: phosphoenolpyruvate carboxykinase (GTP); PRIAM: Phosphoenolpyruvate carboxykinase (GTP); SPTR: C1XWI7 Phosphoenolpyruvate carboxykinase (GTP); PFAM: Phosphoenolpyruvate carboxykinase YP_003684050.1 InterPro IPR018967; KEGG: tth:TTC0943 hypothetical protein; PFAM: Iron sulphur domain-containing, CDGSH-type; SPTR: C1XWI6 Uncharacterized conserved protein; PFAM: Iron-binding zinc finger CDGSH type YP_003684051.1 InterPro IPR017909:IPR006311; KEGG: dge:Dgeo_0097 twin-arginine translocation pathway signal; SPTR: C1XWI5 Putative uncharacterized protein YP_003684052.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR007627:IPR013249:IPR013325:IPR013324:IPR 014284; KEGG: tth:TT_P0164 putative RNA polymerase sigma E protein; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: C1XWI4 RNA polymerase, sigma-24 subunit, RpoE; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_003684053.1 InterPro IPR018764; KEGG: tth:TT_P0165 putative anti-sigmaE protein; PFAM: Anti-sigma K factor RskA; SPTR: C1XWI3 Uncharacterized conserved protein (DUF2337); PFAM: Anti-sigma-K factor rskA YP_003684054.1 InterPro IPR011637; KEGG: ddr:Deide_3p02760 hypothetical protein; PFAM: DoxX family protein; SPTR: C1XWI2 DoxX protein; PFAM: DoxX YP_003684055.1 COGs: COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor); InterPro IPR006369:IPR000537; KEGG: ttj:TTHA0310 cytochrome c oxidase assembly factor (CtaA) + protoheme IX farnesyltransferase (CtaB); PFAM: UbiA prenyltransferase; SPTR: C1XWI1 Protoheme IX farnesyltransferase; TIGRFAM: protoheme IX farnesyltransferase; PFAM: Cytochrome oxidase assembly protein; UbiA prenyltransferase family; TIGRFAM: protoheme IX farnesyltransferase YP_003684056.1 COGs: COG1622 Heme/copper-type cytochrome/quinol oxidase subunit 2; InterProIPR009056:IPR002429:IPR003088:IPR011759:IPR 014222:IPR008972:IPR015964:IPR001505; KEGG: ttj:TTHA0311 cytochrome caa3 oxidase subunit IIC; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; cytochrome C oxidase subunit II transmembrane region; SPTR: C1XWI0 Cytochrome c oxidase subunit 2; TIGRFAM: cytochrome c oxidase, subunit II; PFAM: Cytochrome c; Cytochrome C oxidase subunit II, periplasmic domain; Cytochrome C oxidase subunit II, transmembrane domain; TIGRFAM: cytochrome c oxidase, subunit II YP_003684057.1 COGs: COG0843 Heme/copper-type cytochrome/quinol oxidase subunit 1; InterPro IPR000298:IPR000883:IPR014241:IPR013833; KEGG: tth:TTC1671 cytochrome c oxidase polypeptide I+III; PFAM: cytochrome c oxidase subunit I; cytochrome c oxidase subunit III; PRIAM: Cytochrome-c oxidase; SPTR: C1XWH9 Cytochrome c oxidase, subunit I; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: Cytochrome c oxidase subunit III; Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, subunit I YP_003684058.1 InterPro IPR002559; KEGG: tth:TT_P0158 hypothetical protein; PFAM: transposase IS4 family protein; SPTR: C1XPN1 Transposase family protein; PFAM: Transposase DDE domain YP_003684059.1 COGs: COG2366 Protein related to penicillin acylase; InterPro IPR014395:IPR002692; KEGG: dge:Dgeo_0269 penicillin amidase; PFAM: peptidase S45 penicillin amidase; SPTR: C1XWH6 Penicilin amidase; PFAM: Penicillin amidase YP_003684060.1 KEGG: dra:DR_1499 NADH dehydrogenase I, G subunit; SPTR: C1XWH3 Putative uncharacterized protein YP_003684061.1 InterPro IPR002559; KEGG: tth:TT_P0158 hypothetical protein; PFAM: transposase IS4 family protein; SPTR: C1XPN1 Transposase family protein; PFAM: Transposase DDE domain YP_003684062.1 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR004033; KEGG: ttj:TTHA1854 ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; SPTR: C1XWG7 Ubiquinone/menaquinone biosynthesis methyltransferase; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: ubiE/COQ5 methyltransferase family; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases YP_003684063.1 COGs: COG4603 ABC-type uncharacterized transport system permease component; InterPro IPR006311:IPR001851; KEGG: tth:TTC1504 transporter; PFAM: inner-membrane translocator; SPTR: C1XWG6 Nucleoside ABC transporter membrane protein; PFAM: Branched-chain amino acid transport system / permease component YP_003684064.1 COGs: COG1079 ABC-type transport system permease component; InterPro IPR001851; KEGG: ttj:TTHA1856 ABC transporter permease protein; PFAM: inner-membrane translocator; SPTR: C1XWG5 Nucleoside ABC transporter membrane protein; PFAM: Branched-chain amino acid transport system / permease component YP_003684065.1 KEGG: nph:NP3588A compatible solute transporter (substrate choline/glycine betaine); SPTR: C1XWG4 Putative uncharacterized protein YP_003684066.1 InterPro IPR002559; KEGG: tth:TT_P0158 hypothetical protein; PFAM: transposase IS4 family protein; SPTR: C1XPN1 Transposase family protein; PFAM: Transposase DDE domain YP_003684067.1 COGs: COG2124 Cytochrome P450; InterPro IPR017972:IPR001128:IPR002397; KEGG: dge:Dgeo_0944 cytochrome P450; PFAM: cytochrome P450; SPTR: C1XWG1 Cytochrome P450; PFAM: Cytochrome P450 YP_003684068.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: dra:DR_0605 GGDEF family protein; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; SPTR: C1XWG0 Diguanylate cyclase (GGDEF) domain-containing protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_003684069.1 COGs: COG4106 Trans-aconitate methyltransferase; InterPro IPR013216; KEGG: dra:DR_0422 hypothetical protein; PFAM: Methyltransferase type 11; PRIAM: Trans-aconitate 2-methyltransferase; SPTR: C1XWF9 Trans-aconitate methyltransferase; PFAM: Methyltransferase domain YP_003684070.1 COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR020084:IPR000086:IPR015797:IPR020476; KEGG: rec:RHECIAT_CH0003723 putative nucleoside hydrolase protein, MutT/NUDIX family; PFAM: NUDIX hydrolase; SPTR: C1XWF8 ADP-ribose pyrophosphatase; PFAM: NUDIX domain; TIGRFAM: mutator mutT protein YP_003684071.1 KEGG: ttj:TTHA1857 hypothetical protein; SPTR: C1XWF7 Putative uncharacterized protein YP_003684072.1 COGs: COG1774 Uncharacterized homolog of PSP1; InterPro IPR007557; KEGG: ttj:TTHA1859 PSP1-related protein; PFAM: PSP1 domain protein; SPTR: C1XWF6 Uncharacterized PSP1-like protein; PFAM: PSP1 C-terminal conserved region YP_003684073.1 COGs: COG2812 DNA polymerase III gamma/tau subunits; KEGG: ttj:TTHA1860 DNA polymerase III delta prime subunit; SPTR: C1XWF5 Putative uncharacterized protein YP_003684074.1 InterPro IPR004843:IPR011152; KEGG: ttj:TTHA1861 phosphatase; PFAM: metallophosphoesterase; SPTR: C1XWF4 Predicted phosphoesterase; PFAM: Calcineurin-like phosphoesterase YP_003684075.1 COGs: COG0226 ABC-type phosphate transport system periplasmic component; InterPro IPR006059:IPR005673; KEGG: dge:Dgeo_0649 periplasmic phosphate binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: C1XWF3 Phosphate-binding protein; TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: phosphate ABC transporter, phosphate-binding protein YP_003684076.1 COGs: COG0573 ABC-type phosphate transport system permease component; InterPro IPR011864:IPR000515; KEGG: dge:Dgeo_0650 phosphate ABC transporter permease; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XWF2 Phosphate ABC transporter membrane protein; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstC YP_003684077.1 COGs: COG0581 ABC-type phosphate transport system permease component; InterPro IPR005672:IPR000515; KEGG: dge:Dgeo_0651 phosphate ABC transporter permease; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XWF1 Phosphate ABC transporter membrane protein; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstA YP_003684078.1 COGs: COG1117 ABC-type phosphate transport system ATPase component; InterProIPR017871:IPR005670:IPR003439:IPR003593:IPR 015850; KEGG: dra:DR_A0160 phosphate ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XWF0 Phosphate ABC transporter ATP-binding protein; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter; TIGRFAM: phosphate ABC transporter, ATP-binding protein YP_003684079.1 KEGG: ttj:TTHA0102 hypothetical protein; SPTR: C1XWE9 Putative uncharacterized protein; PFAM: DJ-1/PfpI family YP_003684080.1 COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182:IPR016181; KEGG: hau:Haur_2430 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: C1XWE8 Acetyltransferase, ribosomal protein N-acetylase; PFAM: Acetyltransferase (GNAT) family YP_003684081.1 COGs: COG0012 GTPase probable translation factor; InterProIPR004396:IPR002917:IPR012675:IPR006073:IPR 013029:IPR012676; KEGG: ttj:TTHA1185 GTP-dependent nucleic acid-binding protein EngD; PFAM: Protein of unknown function DUF933; GTP-binding protein HSR1-related; SPTR: C1XWE7 GTP-binding protein YchF; TIGRFAM: GTP-binding protein YchF; PFAM: GTPase of unknown function; Protein of unknown function (DUF933); TIGRFAM: GTP-binding protein YchF YP_003684082.1 InterPro IPR006652:IPR015915:IPR011043:IPR006651; KEGG: nmr:Nmar_1133 kelch repeat-containing protein; PFAM: Kelch repeat-containing protein; SMART: Kelch repeat-containing protein; SPTR: C1XWE6 Uncharacterized conserved protein; PFAM: Kelch motif YP_003684083.1 COGs: COG2005 N-terminal domain of molybdenum-binding protein; InterPro IPR000847:IPR011991; KEGG: wsu:WS0837 hypothetical protein; PFAM: regulatory protein LysR; SPTR: C1XWE5 Molybdenum-binding protein; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; TIGRFAM: ModE molybdate transport repressor domain YP_003684084.1 InterProIPR011717:IPR001440:IPR011990:IPR019734:IPR 013026; KEGG: tth:TTC0036 hypothetical protein; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; SPTR: C1XWE4 Tetratricopeptide repeat protein YP_003684085.1 COGs: COG0465 ATP-dependent Zn protease; InterProIPR003960:IPR005936:IPR011546:IPR003959:IPR 000642:IPR003593; KEGG: ttj:TTHA0403 cell division protein FtsH; PFAM: AAA ATPase central domain protein; peptidase M41 FtsH extracellular; peptidase M41; PRIAM: Microtubule-severing ATPase; SMART: AAA ATPase; SPTR: C1XWE2 Membrane protease FtsH catalytic subunit; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: FtsH Extracellular; Peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH YP_003684086.1 COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; InterProIPR000291:IPR005905:IPR011127:IPR011095:IPR 013817:IPR013816:IPR016185:IPR011761; KEGG: ttj:TTHA1587 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; PRIAM: D-alanine--D-alanine ligase; SPTR: C1XWE1 D-alanine--D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: D-ala D-ala ligase C-terminus; D-ala D-ala ligase N-terminus; TIGRFAM: D-alanine--D-alanine ligase YP_003684087.1 COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR001544; KEGG: phe:Phep_2045 aminotransferase class IV; PFAM: aminotransferase class IV; SPTR: C1XWE0 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; PFAM: Aminotransferase class IV YP_003684088.1 COGs: COG0193 Peptidyl-tRNA hydrolase; InterPro IPR001328; KEGG: ttj:TTHA1588 peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; PRIAM: Aminoacyl-tRNA hydrolase; SPTR: C1XWD9 Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase YP_003684089.1 COGs: COG1825 Ribosomal protein L25 (general stress protein Ctc); InterProIPR020057:IPR011035:IPR020056:IPR020055:IPR 001021; KEGG: ttj:TTHA1589 50S ribosomal protein L25/general stress protein Ctc; PFAM: Ribosomal protein L25-like; SPTR: C1XWD8 LSU ribosomal protein L25P; TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: Ribosomal L25p family; TIGRFAM: ribosomal protein L25, Ctc-form YP_003684090.1 COGs: COG0366 Glycosidase; InterPro IPR016377:IPR006047:IPR013781:IPR017853; KEGG: rba:RB12343 sucrose phosphorylase; PFAM: alpha amylase catalytic region; SPTR: C1XWD7 Glycosidase; PFAM: Alpha amylase, catalytic domain YP_003684091.1 COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR013022:IPR012307; KEGG: sco:SCO7491 hypothetical protein; PFAM: Xylose isomerase domain protein TIM barrel; SPTR: C1XWD6 Sugar phosphate isomerase/epimerase; PFAM: Xylose isomerase-like TIM barrel YP_003684092.1 COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR016040:IPR013149:IPR011032:IPR013154; KEGG: sco:SCO7490 oxidoreductase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; SPTR: C1XWD5 Theronine dehydrogenase-like Zn-dependent dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase YP_003684093.1 COGs: COG3408 Glycogen debranching protein; InterPro IPR008928; KEGG: tth:TTC0614 hypothetical protein; SPTR: C1XWD4 Putative uncharacterized protein; PFAM: Trehalase YP_003684094.1 COGs: COG3839 ABC-type sugar transport systems ATPase components; InterProIPR017871:IPR003439:IPR013611:IPR003593:IPR 008995; KEGG: ttj:TTHA0975 sugar ABC transporter, ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; SPTR: C1XWD3 Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter; TOBE domain YP_003684095.1 COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: ttj:TTHA0976 sugar ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XWD2 Carbohydrate ABC transporter membrane protein 2, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component YP_003684096.1 COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: tth:TTC0613 sugar ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XWD1 Carbohydrate ABC transporter membrane protein 1, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component YP_003684097.1 COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: tth:TTC0615 sugar-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: C1XWD0 Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: Bacterial extracellular solute-binding protein YP_003684098.1 COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761:IPR010982; KEGG: rle:pRL120261 putative HTH-type transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; SPTR: C1XWC9 Transcriptional regulator, LacI family; PFAM: Bacterial regulatory proteins, lacI family; family YP_003684099.1 COGs: COG0685 5 10-methylenetetrahydrofolate reductase; InterPro IPR003171:IPR004620; KEGG: ttj:TTHA0327 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; PRIAM: Methylenetetrahydrofolate reductase (NAD(P)H); SPTR: C1XWC8 Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase, prokaryotic form YP_003684100.1 COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR016040:IPR002198:IPR002347; KEGG: tth:TTC0026 cehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: C1XWC7 Short-chain alcohol dehydrogenase; PFAM: short chain dehydrogenase YP_003684101.1 COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: dge:Dgeo_2482 DedA protein; PFAM: SNARE associated Golgi protein; SPTR: C1XWC6 Uncharacterized membrane-associated protein; PFAM: SNARE associated Golgi protein YP_003684102.1 InterPro IPR002514; KEGG: tth:TT_P0186 hypothetical protein; PFAM: transposase IS3/IS911 family protein; SPTR: C1XWP6 Transposase; PFAM: Integrase core domain; Transposase YP_003684103.1 InterPro IPR006976; KEGG: ttj:TTHA0393 hypothetical protein; PFAM: VanZ family protein; SPTR: C1XWC1 Predicted integral membrane protein, COG5652; PFAM: VanZ like family YP_003684104.1 InterPro IPR004360:IPR017515; KEGG: ttj:TTHA0392 methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: C1XWC0 Methylmalonyl-CoA epimerase; TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: methylmalonyl-CoA epimerase YP_003684105.1 COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR010095:IPR001959; KEGG: rmr:Rmar_1189 transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; putative transposase IS891/IS1136/IS1341 family; SPTR: C1XPF5 Transposase, IS605 OrfB family, central region; TIGRFAM: transposase, IS605 OrfB family; PFAM: Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region YP_003684106.1 KEGG: tth:TTC0027 hypothetical protein; SPTR: C1XWB8 Putative uncharacterized protein YP_003684107.1 COGs: COG1452 Organic solvent tolerance protein OstA; InterPro IPR005653; KEGG: ttj:TTHA0396 hypothetical protein; PFAM: OstA family protein; SPTR: C1XWB6 Putative uncharacterized protein YP_003684108.1 COGs: COG0795 permease; InterPro IPR005495; KEGG: ttj:TTHA0397 hypothetical protein; PFAM: permease YjgP/YjgQ family protein; SPTR: C1XWB4 Predicted permease; PFAM: Predicted permease YjgP/YjgQ family YP_003684109.1 COGs: COG0795 permease; InterPro IPR005495; KEGG: ttj:TTHA0398 hypothetical protein; PFAM: permease YjgP/YjgQ family protein; SPTR: C1XWB3 Predicted permease; PFAM: Predicted permease YjgP/YjgQ family YP_003684110.1 KEGG: rha:RHA1_ro06934 hypothetical protein; SPTR: C1XWB2 Putative uncharacterized protein YP_003684111.1 COGs: COG1321 Mn-dependent transcriptional regulator protein; InterPro IPR001367:IPR007167:IPR008988; KEGG: rmr:Rmar_1279 iron (metal) dependent repressor, DtxR family; PFAM: iron dependent repressor; FeoA family protein; SMART: iron dependent repressor; SPTR: C1XWB1 Mn-dependent transcriptional regulator; PFAM: FeoA domain; Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain YP_003684112.1 COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin; InterPro IPR006129:IPR006127:IPR006128; KEGG: ddr:Deide_3p02720 putative metal ion ABC transporter, periplasmic component/surface adhesin; PFAM: periplasmic solute binding protein; SPTR: C1XWB0 ABC-type metal ion transport system, periplasmic component/surface adhesin; PFAM: Periplasmic solute binding protein family YP_003684113.1 COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: ddr:Deide_3p02730 putative manganese/zinc/iron ABC transporter, ATP-binding component; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XWA9 ATPase component of Mn/Zn ABC-type transporter; PFAM: ABC transporter YP_003684114.1 COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; InterPro IPR001626; KEGG: ddr:Deide_2p01340 putative Mn2+/Zn2+ ABC transporter, permease component; PFAM: ABC-3 protein; SPTR: C1XWA8 ABC-type Mn2+/Zn2+ transport system, permease component; PFAM: ABC 3 transport family YP_003684115.1 COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; InterPro IPR001626; KEGG: ddr:Deide_3p02750 putative manganese/zinc ABC transporter, permease component; PFAM: ABC-3 protein; SPTR: C1XWA7 ABC-type Mn2+/Zn2+ transport system, permease component; PFAM: ABC 3 transport family YP_003684116.1 COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR019800:IPR001764:IPR002772:IPR017853; KEGG: hor:Hore_19810 beta-glucosidase; PFAM: glycoside hydrolase family 3 domain protein; SPTR: C1XWA6 Beta-glucosidase-like glycosyl hydrolase; PFAM: Glycosyl hydrolase family 3 C terminal domain; Glycosyl hydrolase family 3 N terminal domain YP_003684117.1 COGs: COG4213 ABC-type xylose transport system periplasmic component; KEGG: rsq:Rsph17025_2619 D-xylose ABC transporter, periplasmic substrate-binding protein; SPTR: C1XWA5 Monosaccharide ABC transporter substrate-binding protein, CUT2 family YP_003684118.1 COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600:IPR000835; KEGG: ttr:Tter_2656 ROK family protein; PFAM: ROK family protein; regulatory protein MarR; SPTR: C1XWA4 Transcriptional regulator, MarR family; PFAM: ROK family; MarR family YP_003684119.1 COGs: COG2115 Xylose isomerase; InterPro IPR013022:IPR001998:IPR012307:IPR013453; KEGG: dge:Dgeo_2692 xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; PRIAM: Xylose isomerase; SPTR: C1XWA3 Xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: xylose isomerase, Arthrobacter type YP_003684120.1 COGs: COG2017 Galactose mutarotase; InterPro IPR008183:IPR011013:IPR014718; KEGG: dge:Dgeo_2023 aldose 1-epimerase; PFAM: Aldose 1-epimerase; SPTR: C1XWA2 Galactose mutarotase-like enzyme; PFAM: Aldose 1-epimerase YP_003684121.1 COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018483:IPR006000:IPR018485:IPR018484; KEGG: dge:Dgeo_2691 xylulokinase; PFAM: Carbohydrate kinase, FGGY-like; SPTR: C1XWA1 Xylulokinase; TIGRFAM: xylulokinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: D-xylulose kinase YP_003684122.1 COGs: COG1353 hydrolase of the HD superfamily (permuted catalytic motifs); InterPro IPR000160:IPR013408; KEGG: ttj:TTHB147 hypothetical protein; SPTR: C1XW98 CRISPR-associated protein, Csm1 family; TIGRFAM: CRISPR-associated protein, Csm1 family; PFAM: HD domain; TIGRFAM: CRISPR-associated protein, Csm1 family YP_003684123.1 InterPro IPR010149; KEGG: ttj:TTHB148 hypothetical protein; PFAM: CRISPR-associated protein TM1810 domain protein; SPTR: C1XW97 CRISPR-associated protein, Csm2 family; TIGRFAM: CRISPR-associated protein, Csm2 family; PFAM: Protein of unknown function (DUF310); TIGRFAM: CRISPR-associated protein, Csm2 family YP_003684124.1 COGs: COG1337 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR005537:IPR013412; KEGG: tth:TT_P0104 hypothetical protein; PFAM: protein of unknown function DUF324; SPTR: C1XW96 CRISPR-associated protein, Csm3 family; TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, Csm3 family YP_003684125.1 COGs: COG1567 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR005537:IPR005510; KEGG: ttj:TTHB150 hypothetical protein; PFAM: protein of unknown function DUF324; SPTR: C1XW95 CRISPR-associated RAMP protein, Csm4 family; TIGRFAM: CRISPR-associated RAMP protein, Csm4 family; TIGRFAM: CRISPR-associated RAMP protein, Csm4 family YP_003684126.1 COGs: COG1332 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR005537:IPR010173; KEGG: ttj:TTHB151 hypothetical protein; PFAM: protein of unknown function DUF324; SPTR: C1XW94 CRISPR-associated RAMP protein, Csm5 family; TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, Csm5 family YP_003684127.1 InterPro IPR011660; KEGG: ttj:TTHA0502 hypothetical protein; PFAM: Rv0623 family protein transcription factor; SPTR: C1XW93 Uncharacterized conserved protein; PFAM: Rv0623-like transcription factor YP_003684128.1 COGs: COG3742 conserved hypothetical protein; InterPro IPR002716; KEGG: tth:TTC0125 hypothetical protein; PFAM: PilT protein domain protein; SPTR: C1XW92 Uncharacterized conserved protein; PFAM: PIN domain YP_003684129.1 COGs: COG5551 conserved hypothetical protein; InterPro IPR010156:IPR019267; KEGG: ttj:TTHA0078 hypothetical protein; PFAM: Protein of unknown function DUF2276; SPTR: C1XW91 CRISPR-associated protein, Cas6 family; TIGRFAM: CRISPR-associated protein Cas6; PFAM: Uncharacterized conserved protein (DUF2276); TIGRFAM: CRISPR-associated protein Cas6 YP_003684130.1 InterPro IPR014082; KEGG: tth:TT_P0107 hypothetical protein; PFAM: CRISPR-associated protein Cas02710; SPTR: C1XW90 CRISPR-associated protein; TIGRFAM: CRISPR-associated protein, TIGR02710 family; PFAM: CRISPR-associated protein (Cas_Cas02710); TIGRFAM: CRISPR-associated protein, TIGR02710 family YP_003684131.1 COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR002729; KEGG: ttj:TTHB145 hypothetical protein; PFAM: protein of unknown function DUF48; SPTR: C1XW88 CRISPR-associated protein Cas1; TIGRFAM: CRISPR-associated protein Cas1; PFAM: CRISPR associated protein Cas1; TIGRFAM: CRISPR-associated protein Cas1 YP_003684132.1 COGs: COG1343 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR003799; KEGG: tth:TT_P0101 hypothetical protein; PFAM: protein of unknown function DUF196; SPTR: C1XW87 CRISPR-associated protein Cas2; TIGRFAM: CRISPR-associated protein Cas2; PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated protein Cas2 YP_003684133.1 InterPro IPR014082; KEGG: ttj:TTHB144 hypothetical protein; PFAM: CRISPR-associated protein Cas02710; SPTR: C1XW86 CRISPR-associated protein, TIGR02710 family; TIGRFAM: CRISPR-associated protein, TIGR02710 family; PFAM: CRISPR-associated protein (Cas_Cas02710); TIGRFAM: CRISPR-associated protein, TIGR02710 family YP_003684134.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XW85 Integrase family protein; PFAM: Integrase core domain YP_003684135.1 COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterPro IPR004839:IPR015421:IPR015424; KEGG: dra:DR_1030 aminotransferase, putative; PFAM: aminotransferase class I and II; SPTR: C1XW84 Transcriptional regulator with HTH domain and aminotransferase domain; PFAM: Aminotransferase class I and II YP_003684136.1 COGs: COG1126 ABC-type polar amino acid transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: ttj:TTHA1159 amino acid ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XW83 Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter YP_003684137.1 COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; InterPro IPR005925:IPR006035:IPR005924:IPR020855; KEGG: sti:Sthe_0645 agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; SPTR: C1XW82 Agmatinase; TIGRFAM: agmatinase; PFAM: Arginase family; TIGRFAM: agmatinase YP_003684138.1 InterPro IPR011051:IPR001387:IPR014710:IPR013096; KEGG: dra:DR_1029m transcription regulator; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: C1XW81 Predicted transcriptional regulator; PFAM: Cupin domain; Helix-turn-helix YP_003684139.1 COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR010065:IPR000515; KEGG: dra:DR_1028 amino acid ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XW80 Amino acid ABC transporter membrane protein, PAAT family; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family YP_003684140.1 COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638; KEGG: dra:DR_1027 amino acid ABC transporter, periplasmic amino acid-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; SPTR: C1XW79 Amino acid ABC transporter substrate-binding protein, PAAT family; PFAM: Bacterial extracellular solute-binding proteins, family 3 YP_003684141.1 COGs: COG2152 glycosylase; InterPro IPR007184; KEGG: aba:Acid345_0916 glycosidase, PH1107-related; PFAM: glycosidase PH1107-related; SPTR: C1XW78 Predicted glycosylase; PFAM: Domain of unknown function (DUF377) YP_003684142.1 COGs: COG3903 ATPase; InterProIPR000792:IPR011991:IPR013026:IPR011990:IPR 011717:IPR016032; KEGG: rha:RHA1_ro02716 protein kinase/LuxR family transcriptional regulator; PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; SMART: regulatory protein LuxR; SPTR: C1XW77 Predicted ATPase, COG3903; PFAM: Bacterial regulatory proteins, luxR family YP_003684143.1 InterPro IPR011051; KEGG: cak:Caul_3694 hypothetical protein; SPTR: C1XW76 Putative uncharacterized protein YP_003684144.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XW75 Integrase family protein; PFAM: Integrase core domain YP_003684145.1 COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR011545:IPR001650:IPR014014:IPR014021:IPR 014001:IPR000629; KEGG: tth:TTC1895 heat resistant RNA dependent ATPase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: C1XW74 ATP-dependent RNA helicase DbpA; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase YP_003684146.1 InterPro IPR010916:IPR000182:IPR016181; KEGG: dge:Dgeo_2313 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: C1XW73 Acetyltransferase (GNAT) family protein; PFAM: Acetyltransferase (GNAT) family YP_003684147.1 KEGG: ttj:TTHA0751 hypothetical protein; SPTR: C1XW72 Putative uncharacterized protein YP_003684148.1 COGs: COG3011 conserved hypothetical protein; InterPro IPR007263; KEGG: gwc:GWCH70_1956 putative thiol-disulphide oxidoreductase DCC; PFAM: putative thiol-disulphide oxidoreductase DCC; SPTR: C1XW71 Uncharacterized conserved protein; PFAM: Protein of unknown function, DUF393 YP_003684149.1 COGs: COG2896 Molybdenum cofactor biosynthesis protein; InterProIPR007197:IPR006638:IPR013785:IPR013483:IPR 010505; KEGG: ttj:TTHA0011 molybdenum cofactor biosynthesis protein A (MoaA); PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: C1XW70 GTP cyclohydrolase subunit MoaA; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Molybdenum Cofactor Synthesis C; Radical SAM superfamily; TIGRFAM: molybdenum cofactor biosynthesis protein A, bacterial YP_003684150.1 COGs: COG0221 Inorganic pyrophosphatase; InterPro IPR008162; KEGG: ttj:TTHA1965 inorganic pyrophosphatase; PFAM: Inorganic pyrophosphatase; PRIAM: Inorganic diphosphatase; SPTR: C1XW68 Inorganic pyrophosphatase; PFAM: Inorganic pyrophosphatase YP_003684151.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XPF2 Integrase family protein; PFAM: Integrase core domain YP_003684152.1 COGs: COG2872 metal-dependent hydrolase related to alanyl-tRNA synthetase HxxxH domain; InterPro IPR018164:IPR012947:IPR018163:IPR018165; KEGG: ttj:TTHA0146 alanyl-tRNA synthetase-related protein; PFAM: Threonyl/alanyl tRNA synthetase SAD; Alanyl-tRNA synthetase, class IIc-like; SPTR: C1XW66 Predicted metal-dependent hydrolase related to alanyl-tRNA synthetase HxxxH domain; PFAM: Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A) YP_003684153.1 KEGG: swi:Swit_0542 cytochrome c biogenesis protein, transmembrane region; SPTR: C1XW65 Putative uncharacterized protein YP_003684154.1 COGs: COG3333 conserved hypothetical protein; InterPro IPR002823; KEGG: tmz:Tmz1t_0156 protein of unknown function DUF112 transmembrane; PFAM: protein of unknown function DUF112 transmembrane; SPTR: C1XW64 Uncharacterized conserved protein; PFAM: Tripartite tricarboxylate transporter TctA family YP_003684155.1 KEGG: hch:HCH_01640 hypothetical protein; SPTR: C1XW63 Putative uncharacterized protein; PFAM: Tripartite tricarboxylate transporter TctB family YP_003684156.1 COGs: COG3181 conserved hypothetical protein; InterPro IPR005064; KEGG: hch:HCH_01639 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: C1XW62 Uncharacterized conserved protein; PFAM: Tripartite tricarboxylate transporter family receptor YP_003684157.1 COGs: COG1802 Transcriptional regulators; InterPro IPR000524:IPR011711; KEGG: met:M446_1235 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C1XW61 Transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; FCD domain YP_003684158.1 COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterProIPR002942:IPR018496:IPR006145:IPR020103:IPR 000748; KEGG: sth:STH1527 ribosomal small subunit pseudouridine synthase A; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: C1XW60 Pseudouridine synthase; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase family YP_003684159.1 COGs: COG0642 Signal transduction histidine kinase; InterProIPR003660:IPR003661:IPR003594:IPR009082:IPR 004358:IPR005467; KEGG: rpf:Rpic12D_4320 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: C1XXE3 Sensor protein; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003684160.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterProIPR001789:IPR001867:IPR011991:IPR011006:IPR 016032; KEGG: dge:Dgeo_1522 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: C1XFS8 Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_003684161.1 COGs: COG2020 Putative protein-S-isoprenylcysteine methyltransferase; KEGG: gvi:gll2461 hypothetical protein; SPTR: C1XZJ4 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1295) YP_003684162.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR004638:IPR011701:IPR016196:IPR001958; KEGG: mxa:MXAN_0105 EmrB/QacA family drug resistance transporter; PFAM: major facilitator superfamily MFS_1; SPTR: C1XZJ3 Drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily YP_003684163.1 InterPro IPR018649; KEGG: hor:Hore_00160 predicted membrane protein; PFAM: Protein of unknown function DUF2078, membrane; SPTR: C1XZJ2 Predicted membrane protein, COG3462; PFAM: Predicted membrane protein (DUF2078) YP_003684164.1 InterPro IPR018247:IPR015919; KEGG: tth:TTC1863 hypothetical protein; SPTR: C1XZA7 Putative uncharacterized protein YP_003684165.1 COGs: COG0717 Deoxycytidine deaminase; InterPro IPR011962; KEGG: ttj:TTHA0130 deoxycytidine triphosphate deaminase; SPTR: C1XZA8 dCTP deaminase; TIGRFAM: deoxycytidine triphosphate deaminase; PFAM: dUTPase; TIGRFAM: deoxycytidine triphosphate deaminase YP_003684166.1 COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; InterPro IPR005925:IPR006035:IPR020855; KEGG: aba:Acid345_2118 agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; SPTR: C1XZA9 Agmatinase; TIGRFAM: agmatinase; PFAM: Arginase family; TIGRFAM: agmatinase YP_003684167.1 COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130:IPR015891; KEGG: ddr:Deide_22210 putative peptidylprolyl isomerase, precursor (peptidyl-prolyl cis-trans isomerase) (PPIase); PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; SPTR: C1XZB0 Peptidyl-prolyl cis-trans isomerase (Rotamase)-cyclophilin family; PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YP_003684168.1 COGs: COG3705 ATP phosphoribosyltransferase involved in histidine biosynthesis; InterPro IPR002314:IPR004516:IPR006195; KEGG: ttj:TTHA0129 ATP phosphoribosyltransferase regulatory subunit; PFAM: tRNA synthetase class II (G H P and S); PRIAM: Histidine--tRNA ligase; SPTR: C1XZB1 ATP phosphoribosyltransferase regulatory subunit (Fragment); PFAM: tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: ATP phosphoribosyltransferase, regulatory subunit YP_003684169.1 InterPro IPR002345:IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XZ67 Integrase family protein; PFAM: Integrase core domain YP_003684170.1 COGs: COG0261 Ribosomal protein L21; InterPro IPR001787; KEGG: ttj:TTHA1783 50S ribosomal protein L21; PFAM: ribosomal protein L21; SPTR: C1XSP7 50S ribosomal protein L21; TIGRFAM: ribosomal protein L21; PFAM: Ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21 YP_003684171.1 COGs: COG0211 Ribosomal protein L27; InterPro IPR018261:IPR001684; KEGG: tth:TTC1423 50S ribosomal protein L27; PFAM: ribosomal protein L27; SPTR: C1XSP8 LSU ribosomal protein L27P; TIGRFAM: ribosomal protein L27; PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27 YP_003684172.1 COGs: COG0536 GTPase; InterProIPR006169:IPR014100:IPR006074:IPR002917:IPR 005225:IPR006073:IPR015349; KEGG: tth:TTC1422 GTPase ObgE; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; GTP1/OBG domain protein; SPTR: C1XSP9 GTP-binding protein Obg/CgtA; TIGRFAM: GTP-binding protein Obg/CgtA; small GTP-binding protein; Obg family GTPase CgtA; PFAM: GTPase of unknown function; Domain of unknown function (DUF1967); GTP1/OBG; TIGRFAM: Obg family GTPase CgtA; Obg family GTPase CgtA, C-terminal extension; small GTP-binding protein domain YP_003684173.1 COGs: COG1057 Nicotinic acid mononucleotide adenylyltransferase; InterPro IPR004821:IPR005248:IPR004820:IPR014729; KEGG: ttj:TTHA1780 nicotinic acid mononucleotide adenylyltransferase; PFAM: cytidylyltransferase; PRIAM: Nicotinate-nucleotide adenylyltransferase; SPTR: C1XSQ0 Nicotinate-nucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: Cytidylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain YP_003684174.1 COGs: COG1713 HD superfamily hydrolase involved in NAD metabolism; InterPro IPR005249:IPR006674:IPR003607; KEGG: tth:TTC1420 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: C1XSQ1 Metal dependent phosphohydrolase; PFAM: HD domain; TIGRFAM: conserved hypothetical protein TIGR00488 YP_003684175.1 COGs: COG1316 Transcriptional regulator; InterPro IPR004474; KEGG: ttj:TTHA1778 LytR/CspA/Psr family protein; PFAM: cell envelope-related transcriptional attenuator; SPTR: C1XSQ2 Cell envelope-related function transcriptional attenuator common domain; TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: Cell envelope-related transcriptional attenuator domain; TIGRFAM: cell envelope-related function transcriptional attenuator common domain YP_003684176.1 COGs: COG0799 Iojap protein; InterPro IPR004394; KEGG: ttj:TTHA1777 hypothetical protein; PFAM: Iojap-related protein; SPTR: C1XSQ3 Iojap-related protein; TIGRFAM: iojap-like protein; PFAM: Domain of unknown function DUF143; TIGRFAM: iojap-related protein YP_003684177.1 KEGG: tth:TTC1417 hypothetical protein; SPTR: C1XSQ4 Putative uncharacterized protein YP_003684178.1 InterPro IPR007484; KEGG: ttj:TTHA1800 hypothetical protein; PFAM: peptidase M28; SPTR: C1XSQ5 Predicted aminopeptidase; PFAM: Peptidase family M28 YP_003684179.1 COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR001482:IPR006321:IPR003593; KEGG: tth:TTC1415 pili retraction protein PilT; PFAM: type II secretion system protein E; SMART: AAA ATPase; SPTR: C1XSQ6 Pilus retraction protein PilT; TIGRFAM: twitching motility protein; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT YP_003684180.1 COGs: COG0191 Fructose/tagatose bisphosphate aldolase; InterPro IPR000771:IPR011289:IPR013785; KEGG: ttj:TTHA1773 fructose-1,6-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; PRIAM: Fructose-bisphosphate aldolase; SPTR: C1XSQ7 Fructose-bisphosphate aldolase; TIGRFAM: fructose-1,6-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; PFAM: Fructose-bisphosphate aldolase class-II; TIGRFAM: ketose-bisphosphate aldolases; fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist YP_003684181.1 InterPro IPR001440:IPR011990:IPR019734:IPR013026; KEGG: ter:Tery_2811 tetratricopeptide TPR_2; PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: C1XSQ8 Tetratricopeptide repeat protein; PFAM: Tetratricopeptide repeat YP_003684182.1 COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209:IPR014756; KEGG: bcl:ABC0761 extracellular alkaline serine protease; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: C1XSQ9 Subtilisin-like serine protease; PFAM: Subtilase family YP_003684183.1 KEGG: xce:Xcel_0213 hypothetical protein; SPTR: C1XSR0 Putative uncharacterized protein YP_003684184.1 SPTR: C1XSR1 Putative uncharacterized protein YP_003684185.1 COGs: COG0462 Phosphoribosylpyrophosphate synthetase; InterPro IPR000836:IPR005946:IPR000842; KEGG: ttj:TTHA1549 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; PRIAM: Ribose-phosphate diphosphokinase; SPTR: C1XSR2 Ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase YP_003684186.1 COGs: COG0775 Nucleoside phosphorylase; InterPro IPR010049:IPR000845; KEGG: ttj:TTHA1550 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; PFAM: purine or other phosphorylase family 1; PRIAM: Adenosylhomocysteine nucleosidase; SPTR: C1XSR3 Methylthioadenosine nucleosidase; TIGRFAM: MTA/SAH nucleosidase; PFAM: Phosphorylase superfamily; TIGRFAM: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_003684187.1 COGs: COG0499 S-adenosylhomocysteine hydrolase; InterPro IPR020082:IPR000043:IPR016040:IPR015878; KEGG: rca:Rcas_0159 S-adenosyl-L-homocysteine hydrolase; PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding; S-adenosyl-L-homocysteine hydrolase; PRIAM: Adenosylhomocysteinase; SPTR: C1XSR4 Adenosylhomocysteinase; TIGRFAM: adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; S-adenosyl-L-homocysteine hydrolase; TIGRFAM: adenosylhomocysteinase YP_003684188.1 COGs: COG1854 LuxS protein involved in autoinducer AI2 synthesis; InterPro IPR003815:IPR011249; KEGG: dra:DR_2387 S-ribosylhomocysteinase; PFAM: LuxS protein; PRIAM: S-ribosylhomocysteine lyase; SPTR: C1XSR5 LuxS protein involved in autoinducer AI2 synthesis; PFAM: S-Ribosylhomocysteinase (LuxS) YP_003684189.1 COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR003445; KEGG: ttj:TTHA1173 trk system potassium uptake protein (TrkG); PFAM: cation transporter; SPTR: C1XSR6 Trk-type K+ transport system, membrane component; PFAM: Cation transport protein YP_003684190.1 COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR006037:IPR016040:IPR003148:IPR006036; KEGG: tth:TTC0810 potassium transporter peripheral membrane component; PFAM: TrkA-N domain protein; TrkA-C domain protein; SPTR: C1XSR7 K+ transport system, NAD-binding component; PFAM: TrkA-N domain; TrkA-C domain YP_003684191.1 COGs: COG0621 2-methylthioadenine synthetase; InterProIPR005839:IPR013848:IPR005840:IPR007197:IPR 006638:IPR002792; KEGG: tth:TTC0811 Fe-S oxidoreductase; PFAM: Protein of unknown function UPF0004 ; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: C1XSR8 SSU ribosomal protein S12P methylthiotransferase; TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: TRAM domain; Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme YliG, TIGR01125; RNA modification enzyme, MiaB family YP_003684192.1 InterPro IPR000620; KEGG: bcq:BCQ_PI196 hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: C1XSR9 Integral membrane protein DUF6; PFAM: EamA-like transporter family YP_003684193.1 COGs: COG1426 conserved hypothetical protein; InterPro IPR013229:IPR001387; KEGG: ttj:TTHA1176 hypothetical protein; PFAM: PEGA domain protein; SMART: helix-turn-helix domain protein; SPTR: C1XSS0 Uncharacterized conserved protein; PFAM: PEGA domain YP_003684194.1 COGs: COG2313 Uncharacterized protein involved in pigment biosynthesis; InterPro IPR007342; KEGG: tth:TTC0813 hypothetical protein; PFAM: Indigoidine synthase A family protein; SPTR: C1XSS1 Uncharacterized enzyme involved in pigment biosynthesis; PFAM: Indigoidine synthase A like protein YP_003684195.1 KEGG: ttj:TTHA1178 hypothetical protein; SPTR: C1XSS2 Putative uncharacterized protein YP_003684196.1 COGs: COG3001 conserved hypothetical protein; InterPro IPR016477:IPR011009; KEGG: tth:TTC0815 phosphatidylserine decarboxylase; PFAM: Fructosamine/Ketosamine-3-kinase; SPTR: C1XSS3 Fructosamine-3-kinase; PFAM: Fructosamine kinase YP_003684197.1 COGs: COG0394 Protein-tyrosine-phosphatase; InterPro IPR017867:IPR000106; KEGG: ttj:TTHA1180 low molecular weight phosphotyrosine protein phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; SPTR: C1XSS4 Protein tyrosine phosphatase; PFAM: Low molecular weight phosphotyrosine protein phosphatase YP_003684198.1 COGs: COG0366 Glycosidase; InterPro IPR006589:IPR006047:IPR013781:IPR017853; KEGG: tth:TTC0107 alpha-glucosidase/glycosyl hydrolase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: C1XSS5 Glycosidase; PFAM: Alpha amylase, catalytic domain YP_003684199.1 KEGG: fre:Franean1_3151 hypothetical protein; SPTR: C1XSS6 Putative uncharacterized protein YP_003684200.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XSS7 Integrase family protein; PFAM: Integrase core domain YP_003684201.1 COGs: COG0277 FAD/FMN-containing dehydrogenase; InterProIPR006094:IPR004113:IPR016167:IPR016168:IPR 016166:IPR016164; KEGG: ttj:TTHA0040 FAD/FMN-containing dehydrogenase; PFAM: FAD linked oxidase domain protein; SPTR: C1XSS8 FAD/FMN-dependent dehydrogenase; PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain; TIGRFAM: glycolate oxidase, subunit GlcD YP_003684202.1 KEGG: similar to macrophage colony stimulating factor I receptor; K05090 macrophage colony-stimulating factor 1 receptor; SPTR: C1XSS9 Putative uncharacterized protein YP_003684203.1 COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR005399:IPR001395; KEGG: tth:TTC1969 oxidoreductase; PFAM: aldo/keto reductase; SPTR: C1XST0 Predicted oxidoreductase similar to aryl-alcohol dehydrogenase; PFAM: Aldo/keto reductase family; TIGRFAM: voltage-dependent potassium channel beta subunit, animal YP_003684204.1 InterPro IPR018967; KEGG: tth:TTC1970 hypothetical protein; PFAM: Iron sulphur domain-containing, CDGSH-type; SPTR: C1XST1 Iron-binding zinc finger protein, CDGSH type; PFAM: Iron-binding zinc finger CDGSH type YP_003684205.1 COGs: COG3180 Putative ammonia monooxygenase; InterPro IPR017516:IPR007820; KEGG: ttj:TTHA0025 hypothetical protein; PFAM: putative ammonia monooxygenase; SPTR: C1XST2 Membrane protein AbrB duplication; TIGRFAM: membrane protein AbrB duplication; PFAM: Putative ammonia monooxygenase; TIGRFAM: membrane protein AbrB duplication YP_003684206.1 COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: wsu:WS1168 hypothetical protein; PFAM: helix-turn-helix HxlR type; SPTR: C1XST3 Transcriptional regulator, MarR family; PFAM: HxlR-like helix-turn-helix YP_003684207.1 COGs: COG2910 Putative NADH-flavin reductase; InterPro IPR008030:IPR016040; KEGG: cyt:cce_1769 hypothetical protein; PFAM: NmrA family protein; SPTR: C1XST4 Putative NADH-flavin reductase; PFAM: NmrA-like family YP_003684208.1 InterPro IPR004360; KEGG: mch:Mchl_4428 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: C1XST5 Predicted ring-cleavage extradiol dioxygenase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_003684209.1 COGs: COG2366 Protein related to penicillin acylase; InterPro IPR014395:IPR002692; KEGG: tth:TTC1972 penicillin acylase; PFAM: peptidase S45 penicillin amidase; SPTR: C1XST6 Penicilin amidase; PFAM: Penicillin amidase YP_003684210.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: sti:Sthe_2191 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XST7 ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter YP_003684211.1 KEGG: dge:Dgeo_0382 hypothetical protein; SPTR: C1XST8 ABC-type transport system involved in multi-copper enzyme maturation, permease component YP_003684212.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: sti:Sthe_0908 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XST9 ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter YP_003684213.1 KEGG: tro:trd_0186 putative permease; SPTR: C1XSU0 Putative uncharacterized protein YP_003684214.1 COGs: COG1725 transcriptional regulator protein; InterPro IPR000524:IPR011991; KEGG: dtu:Dtur_0631 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C1XSU1 Predicted transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family YP_003684215.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: mta:Moth_1174 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XSU2 ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter YP_003684216.1 KEGG: rmr:Rmar_1769 ABC-2 type transporter; SPTR: C1XSU3 Putative uncharacterized protein YP_003684217.1 KEGG: bvu:BVU_1095 phosphoribosylamine--glycine ligase; SPTR: C1XSU4 Putative uncharacterized protein YP_003684218.1 InterPro IPR002559:IPR012337; KEGG: cau:Caur_2446 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: C1XPT2 Transposase family protein; PFAM: Transposase DDE domain YP_003684219.1 InterPro IPR019222; KEGG: amr:AM1_5675 hypothetical protein; PFAM: Protein of unknown function DUF2143; SPTR: C1XSU6 Uncharacterized conserved protein (DUF2143); PFAM: Yip1 domain YP_003684220.1 InterPro IPR003423; KEGG: ttj:TTHA0732 hypothetical protein; PFAM: outer membrane efflux protein; SPTR: C1XSU7 Outer membrane protein; PFAM: Outer membrane efflux protein YP_003684221.1 InterPro IPR003423; KEGG: ttj:TTHA1005 hypothetical protein; PFAM: outer membrane efflux protein; SPTR: C1XSU8 Putative uncharacterized protein; PFAM: Outer membrane efflux protein YP_003684222.1 COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: adg:Adeg_1985 efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; SPTR: C1XSU9 RND family efflux transporter, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_003684223.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: sth:STH976 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XSV0 ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter YP_003684224.1 COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: cbf:CLI_0143 putative macrolide efflux ABC transporter, permease protein; PFAM: protein of unknown function DUF214; SPTR: C1XSV1 ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease YP_003684225.1 COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR018170:IPR001395:IPR020471; KEGG: rxy:Rxyl_0494 aldo/keto reductase; PFAM: aldo/keto reductase; SPTR: C1XSV2 Predicted oxidoreductase similar to aryl-alcohol dehydrogenase; PFAM: Aldo/keto reductase family YP_003684226.1 COGs: COG1067 ATP-dependent protease; InterPro IPR008269:IPR020568:IPR001984; KEGG: tth:TTC1975 ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; SPTR: C1XSV3 Predicted ATP-dependent protease; PFAM: Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: lon-related putative ATP-dependent protease YP_003684227.1 COGs: COG0448 ADP-glucose pyrophosphorylase; InterPro IPR005836:IPR011831:IPR005835:IPR011004; KEGG: ttj:TTHA0022 glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; SPTR: C1XSV4 Glucose-1-phosphate adenylyltransferase; TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate adenylyltransferase YP_003684228.1 InterPro IPR000415:IPR020051; KEGG: ttj:TTHA0021 putative NADPH oxidoreductase; PFAM: nitroreductase; SPTR: C1XSV5 Nitroreductase family protein; TIGRFAM: SagB-type dehydrogenase domain; PFAM: Nitroreductase family; TIGRFAM: SagB-type dehydrogenase domain YP_003684229.1 InterPro IPR002559; KEGG: tth:TT_P0158 hypothetical protein; PFAM: transposase IS4 family protein; SPTR: C1XPN1 Transposase family protein; PFAM: Transposase DDE domain YP_003684230.1 COGs: COG2105 conserved hypothetical protein; InterPro IPR009288:IPR013024; KEGG: tth:TTC1979 hypothetical protein; PFAM: AIG2 family protein; SPTR: C1XSV8 Uncharacterized conserved protein; PFAM: AIG2-like family YP_003684231.1 COGs: COG0297 Glycogen synthase; InterPro IPR001296:IPR011835:IPR013534; KEGG: ttj:TTHA0018 glycogen synthase (starch [ glycogen] synthase); PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1; PRIAM: Starch synthase; SPTR: C1XSV9 Glycogen/starch synthase, ADP-glucose type; TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain; Glycosyl transferases group 1; TIGRFAM: glycogen/starch synthases, ADP-glucose type YP_003684232.1 InterProIPR013105:IPR001440:IPR011990:IPR019734:IPR 013026; KEGG: dge:Dgeo_1144 tetratricopeptide TPR_2; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: C1XSW0 Tetratricopeptide repeat protein YP_003684233.1 COGs: COG2323 membrane protein; InterPro IPR007353; KEGG: ttr:Tter_2343 protein of unknown function DUF421; PFAM: protein of unknown function DUF421; SPTR: C1XS68 Predicted membrane protein, COG2323; PFAM: Protein of unknown function (DUF421) YP_003684234.1 InterPro IPR000182:IPR016181; KEGG: dge:Dgeo_0737 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: C1XS69 Acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_003684235.1 COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: dge:Dgeo_1264 LmbE-like protein protein; PFAM: LmbE family protein; SPTR: C1XS70 Uncharacterized LmbE-like protein; PFAM: GlcNAc-PI de-N-acetylase YP_003684236.1 COGs: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components; InterPro IPR015168; KEGG: dge:Dgeo_0363 putative sulfonate/nitrate/taurine transport system substrate-binding protein; PFAM: NMT1/THI5 like domain protein; SPTR: C1XS71 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component; PFAM: NMT1/THI5 like YP_003684237.1 InterPro IPR007527; KEGG: hau:Haur_3437 zinc finger SWIM domain-containing protein; PFAM: zinc finger SWIM domain protein; SPTR: C1XS72 Uncharacterized conserved protein; PFAM: SWIM zinc finger YP_003684238.1 COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; InterPro IPR017871:IPR003439:IPR000515:IPR003593; KEGG: dge:Dgeo_0111 ABC transporter related; PFAM: ABC transporter related; binding-protein-dependent transport systems inner membrane component; SMART: AAA ATPase; SPTR: C1XS73 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component; PFAM: ABC transporter; Binding-protein-dependent transport system inner membrane component YP_003684239.1 COGs: COG0642 Signal transduction histidine kinase; InterProIPR009082:IPR003660:IPR003594:IPR003661:IPR 005467:IPR004358; KEGG: dra:DR_1606 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: C1XS74 Sensor protein; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003684240.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867:IPR011991:IPR011006; KEGG: ttj:TTHA1002 response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: C1XS75 Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_003684241.1 KEGG: sml:Smlt3655 putative histone protein; SPTR: C1XS76 Putative uncharacterized protein YP_003684242.1 COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; InterProIPR010243:IPR007645:IPR019462:IPR007120:IPR 007641:IPR007121:IPR007644; KEGG: ttj:TTHA1813 DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2 domain 7; RNA polymerase beta subunit; PRIAM: DNA-directed RNA polymerase; SPTR: C1XS77 DNA-directed RNA polymerase; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subunit YP_003684243.1 COGs: COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit; InterProIPR012754:IPR007081:IPR000722:IPR006592:IPR 007080:IPR007083:IPR007066; KEGG: ttj:TTHA1812 DNA-directed RNA polymerase beta' chain (RpoC); PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 4; RNA polymerase Rpb1 domain 3; SMART: RNA polymerase I subunit A domain protein; SPTR: C1XS78 DNA-directed RNA polymerase; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 5; TIGRFAM: DNA-directed RNA polymerase, beta' subunit, predominant form YP_003684244.1 COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: ttj:TTHA1811 fuculose-1-phosphate aldolase; PFAM: class II aldolase/adducin family protein; SPTR: C1XS79 Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase; PFAM: Class II Aldolase and Adducin N-terminal domain YP_003684245.1 KEGG: ttj:TTHA1810 hypothetical protein; SPTR: C1XS80 Putative uncharacterized protein YP_003684246.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR002410:IPR000073; KEGG: tth:TTC1457 proline iminopeptidase; PFAM: alpha/beta hydrolase fold; SPTR: C1XS81 Predicted hydrolase or acyltransferase of alpha/beta superfamily; PFAM: alpha/beta hydrolase fold YP_003684247.1 InterPro IPR004305:IPR016084; KEGG: rxy:Rxyl_2792 TenA family transcription regulator; PFAM: TENA/THI-4 domain protein; SPTR: C1XS82 Putative transcription activator; PFAM: TENA/THI-4/PQQC family YP_003684248.1 COGs: COG0360 Ribosomal protein S6; InterPro IPR000529:IPR020814:IPR014717; KEGG: ttj:TTHA0245 30S ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like; SPTR: C1XS83 SSU ribosomal protein S6P; TIGRFAM: ribosomal protein S6; PFAM: Ribosomal protein S6; TIGRFAM: ribosomal protein S6 YP_003684249.1 COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR000424:IPR012340:IPR016027:IPR011344; KEGG: tth:TTC1741 single-strand DNA binding protein (ssb); PFAM: single-strand binding protein/Primosomal replication protein n; SPTR: C1XS84 Single-stranded DNA-binding protein; TIGRFAM: single-strand binding protein; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb) YP_003684250.1 COGs: COG0238 Ribosomal protein S18; InterPro IPR018170:IPR001648; KEGG: ttj:TTHA0243 30S ribosomal protein S18; PFAM: ribosomal protein S18; SPTR: C1XS85 SSU ribosomal protein S18P; TIGRFAM: ribosomal protein S18; PFAM: Ribosomal protein S18; TIGRFAM: ribosomal protein S18 YP_003684251.1 COGs: COG0359 Ribosomal protein L9; InterPro IPR020594:IPR020070:IPR009027:IPR020069; KEGG: tth:TTC1743 50S ribosomal protein L9; PFAM: Ribosomal protein L9-like; SPTR: C1XS86 LSU ribosomal protein L9P; TIGRFAM: ribosomal protein L9; PFAM: Ribosomal protein L9, N-terminal domain; Ribosomal protein L9, C-terminal domain; TIGRFAM: ribosomal protein L9 YP_003684252.1 KEGG: rca:Rcas_3045 hypothetical protein; SPTR: C1XS87 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1282) YP_003684253.1 COGs: COG0321 Lipoate-protein ligase B; InterPro IPR000544:IPR004143; KEGG: ttj:TTHA0240 lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; PRIAM: Lipoyl(octanoyl) transferase; SPTR: C1XS88 Lipoate-protein ligase B; TIGRFAM: lipoate-protein ligase B; PFAM: Biotin/lipoate A/B protein ligase family; TIGRFAM: lipoate-protein ligase B YP_003684254.1 COGs: COG0320 Lipoate synthase; InterPro IPR003698:IPR007197:IPR006638:IPR013785; KEGG: ttj:TTHA0239 lipoyl synthase; PFAM: Radical SAM domain protein; PRIAM: Lipoyl synthase; SMART: Elongator protein 3/MiaB/NifB; SPTR: C1XS89 Lipoate synthase; TIGRFAM: lipoic acid synthetase; PFAM: Radical SAM superfamily; TIGRFAM: lipoate synthase YP_003684255.1 KEGG: ttj:TTHA0238 hypothetical protein; SPTR: C1XS90 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3054) YP_003684256.1 COGs: COG0366 Glycosidase; InterPro IPR006047:IPR013781:IPR006589:IPR017853; KEGG: lbf:LBF_3272 glycosidase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: C1XS91 Glycosidase; PFAM: Alpha amylase, catalytic domain; Domain of unknown function (DUF3459); TIGRFAM: trehalose synthase YP_003684257.1 COGs: COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenase; InterPro IPR016040:IPR008927:IPR006115:IPR013328; KEGG: ttj:TTHA0237 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; SPTR: C1XS92 Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase YP_003684258.1 InterPro IPR013517; KEGG: rmr:Rmar_1732 Crp/FNR family transcriptional regulator; PFAM: FG-GAP repeat protein; SPTR: C1XS93 Uncharacterized conserved protein; PFAM: Trehalose utilisation; FG-GAP repeat YP_003684259.1 InterPro IPR002559:IPR012337; KEGG: cau:Caur_2446 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: C1XPT2 Transposase family protein; PFAM: Transposase DDE domain YP_003684260.1 COGs: COG0704 Phosphate uptake regulator; InterPro IPR008170; KEGG: ttj:TTHA0143 phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; SPTR: C1XS95 Phosphate uptake regulator, PhoU; TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU domain; TIGRFAM: phosphate transport system regulatory protein PhoU YP_003684261.1 COGs: COG5002 Signal transduction histidine kinase; InterProIPR009082:IPR000014:IPR003594:IPR003661:IPR 005467:IPR004358; KEGG: ttj:TTHA0144 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; SPTR: C1XS96 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003684262.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterProIPR001789:IPR001867:IPR011991:IPR011006:IPR 016032; KEGG: ttj:TTHA0145 phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: C1XS97 Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_003684263.1 COGs: COG0587 DNA polymerase III alpha subunit; InterProIPR004805:IPR004013:IPR011708:IPR004365:IPR 003141:IPR016195; KEGG: ddr:Deide_21950 putative DNA-directed DNA polymerase (DNA polymerase III, alpha subunit); PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; SPTR: C1XS98 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III alpha subunit; PHP domain; OB-fold nucleic acid binding domain; TIGRFAM: DNA-directed DNA polymerase III (polc) YP_003684264.1 KEGG: hypothetical protein LOC100065846; K01028 3-oxoacid CoA-transferase subunit A; SPTR: C1XS99 Putative uncharacterized protein YP_003684265.1 KEGG: ttj:TTHA0253 hypothetical protein; SPTR: C1XSA0 Putative uncharacterized protein YP_003684266.1 KEGG: ttj:TTHA0254 hypothetical protein; SPTR: C1XSA1 Integrase family protein; PFAM: Septum formation initiator YP_003684267.1 COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: tth:TTC1730 ferric uptake regulation protein; PFAM: ferric-uptake regulator; SPTR: C1XSA2 Ferric uptake regulator, Fur family; PFAM: Ferric uptake regulator family YP_003684268.1 KEGG: sgr:SGR_7127t putative transposase; SPTR: C1XSA3 Putative uncharacterized protein YP_003684269.1 COGs: COG0260 Leucyl aminopeptidase; InterPro IPR000819:IPR008283; KEGG: ttj:TTHA0256 leucine aminopeptidase; PFAM: peptidase M17 leucyl aminopeptidase domain protein; PRIAM: Leucyl aminopeptidase; SPTR: C1XSA4 Leucyl aminopeptidase; PFAM: Cytosol aminopeptidase family, catalytic domain; Cytosol aminopeptidase family, N-terminal domain YP_003684270.1 COGs: COG3872 metal-dependent protein; InterPro IPR010787; KEGG: tth:TTC1728 hypothetical protein; PFAM: protein of unknown function DUF1385; SPTR: C1XSA5 Predicted metal-dependent enzyme, COG3872; PFAM: Protein of unknown function (DUF1385) YP_003684271.1 COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain; InterPro IPR014729:IPR004506:IPR018318; KEGG: ttj:TTHA0258 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PFAM: tRNA methyl transferase-like; SPTR: C1XSA6 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PFAM: tRNA methyl transferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_003684272.1 KEGG: ttj:TTHA1862 hypothetical protein; SPTR: C1XSA7 Putative uncharacterized protein YP_003684273.1 KEGG: ttj:TTHA1863 hypothetical protein; SPTR: C1XSA8 Putative uncharacterized protein YP_003684274.1 KEGG: tth:TTC1667 hypothetical protein; SPTR: C1XSA9 Putative uncharacterized protein YP_003684275.1 COGs: COG0354 aminomethyltransferase related to GcvT; InterPro IPR013977:IPR017703:IPR006222; KEGG: dge:Dgeo_2127 glycine cleavage T protein (aminomethyl transferase); PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; SPTR: C1XSB0 Folate-binding protein YgfZ; TIGRFAM: folate-binding protein YgfZ; PFAM: Aminomethyltransferase folate-binding domain; Glycine cleavage T-protein C-terminal barrel domain; TIGRFAM: folate-binding protein YgfZ YP_003684276.1 COGs: COG1058 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; InterPro IPR008136:IPR001453:IPR008135; KEGG: ttj:TTHA1820 competence/damage-inducible protein CinA; PFAM: CinA domain protein; molybdopterin binding domain; SMART: molybdopterin binding domain; SPTR: C1XSB1 Competence/damage-inducible protein cinA; TIGRFAM: competence/damage-inducible protein CinA; PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor synthesis domain YP_003684277.1 COGs: COG1514 2'-5' RNA ligase; InterPro IPR004175:IPR014051:IPR009097; KEGG: ttj:TTHA1819 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; SPTR: C1XSB2 2'-5' RNA ligase; TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase family; TIGRFAM: 2'-5' RNA ligase YP_003684278.1 COGs: COG0468 RecA/RadA recombinase; InterProIPR020584:IPR001553:IPR013765:IPR003593:IPR 020588:IPR020587; KEGG: tth:TTC1466 recombinase A; PFAM: RecA domain protein; SMART: AAA ATPase; SPTR: C1XSB3 Protein recA; TIGRFAM: recA protein; PFAM: recA bacterial DNA recombination protein; TIGRFAM: protein RecA YP_003684279.1 COGs: COG1418 HD superfamily hydrolase; InterProIPR004088:IPR018111:IPR006675:IPR017705:IPR 004087:IPR003607:IPR006674; KEGG: ttj:TTHA1817 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; K Homology, type 1, subgroup; PRIAM: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; SMART: metal-dependent phosphohydrolase HD region; KH domain protein; SPTR: C1XSB4 Metal dependent phosphohydrolase; TIGRFAM: YmdA/YtgF protein; metal dependent phophohydrolase; PFAM: KH domain; HD domain; Domain of unknown function (DUF3552); TIGRFAM: conserved hypothetical protein YmdA/YtgF; uncharacterized domain HDIG YP_003684280.1 COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: gvi:glr0149 ParA family chromosome partitioning ATPase; SPTR: C1XSB5 Putative uncharacterized protein; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_003684281.1 COGs: COG1077 Actin-like ATPase involved in cell morphogenesis; InterPro IPR004753; KEGG: ttj:TTHA1816 rod shape-determining protein MreB; PFAM: cell shape determining protein MreB/Mrl; SPTR: C1XGQ4 Rod shape-determining protein MreB; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family YP_003684282.1 COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); InterPro IPR001451:IPR011004:IPR018357; KEGG: dth:DICTH_0661 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; SPTR: C1XSB8 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_003684283.1 COGs: COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase; InterPro IPR011334:IPR020568:IPR015870:IPR004463; KEGG: syx:SynWH7803_1958 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; SPTR: C1XSB9 UDP-3-O-acyl-N-acetylglucosamine deacetylase; PFAM: UDP-3-O-acyl N-acetylglycosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase YP_003684284.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104:IPR016040; KEGG: lic:LIC10522 oxidoreductase family protein; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: C1XSC0 Predicted dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain YP_003684285.1 COGs: COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase; InterPro IPR010084:IPR013114; KEGG: ttj:TTHA1815 (3R)-hydroxymyristoyl-acyl carrier protein dehydratase; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; SPTR: C1XSC1 3-hydroxyacyl-(Acyl-carrier-protein) dehydratase; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: FabA-like domain; TIGRFAM: beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ YP_003684286.1 COGs: COG1043 Acyl-(acyl carrier protein); InterPro IPR018357:IPR010137:IPR001451:IPR011004; KEGG: noc:Noc_1752 UDP-N-acetylglucosamine acyltransferase; PFAM: transferase hexapeptide repeat containing protein; PRIAM:Acyl-[acyl-carrier-protein]--UDP-N-acetylgluc osamineO-acyltransferase; SPTR: C1XSC2 Acyl-(Acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase; TIGRFAM:acyl-[acyl-carrier-protein]--UDP-N-acetylgl ucosamineO-acyltransferase; TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase YP_003684287.1 InterPro IPR003835; KEGG: syf:Synpcc7942_1378 hypothetical protein; PFAM: glycosyl transferase family 19; SPTR: C1XSC3 Lipid A disaccharide synthetase; PFAM: Lipid-A-disaccharide synthetase YP_003684288.1 KEGG: fre:Franean1_0429 ABC transporter related; SPTR: C1XSC4 Putative uncharacterized protein YP_003684289.1 COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR017940:IPR003439:IPR017871:IPR003593:IPR 011527:IPR001140; KEGG: bcj:BCAL2408 lipid A export ATP-binding/permease protein MsbA; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: C1XSC5 ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter transmembrane region; ABC transporter YP_003684290.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792:IPR016032:IPR011991; KEGG: dge:Dgeo_2791 LuxR family transcriptional regulator; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; SPTR: C1XSC6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PFAM: Bacterial regulatory proteins, luxR family YP_003684291.1 InterPro IPR012336; KEGG: pcu:pc0379 thioredoxin; SPTR: C1XSC7 Putative uncharacterized protein; TIGRFAM: bacteriocin transport accessory protein, putative YP_003684292.1 SPTR: C1XSC8 Putative uncharacterized protein YP_003684293.1 COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: sco:SCP1.259 putative transposon transposase; PFAM: transposase mutator type; SPTR: C1XP69 Transposase; PFAM: Transposase, Mutator family YP_003684294.1 KEGG: rso:RS01738 hypothetical protein; SPTR: C1XSD0 Putative uncharacterized protein YP_003684295.1 InterPro IPR008217; KEGG: dge:Dgeo_1435 hypothetical protein; PFAM: protein of unknown function DUF125 transmembrane; SPTR: C1XSD2 Integral membrane protein DUF125; PFAM: VIT family YP_003684296.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XSD3 Integrase family protein; PFAM: Integrase core domain YP_003684297.1 COGs: COG2302 conserved hypothetical protein contains S4-like domain; InterPro IPR002942; KEGG: ttj:TTHA1814 hypothetical protein; PFAM: RNA-binding S4 domain protein; SPTR: C1XSD4 Uncharacterized conserved protein, contains S4-like domain YP_003684298.1 COGs: COG1647 Esterase/lipase; InterPro IPR012354:IPR000073; KEGG: tth:TTC1341 carboxylesterase; PFAM: alpha/beta hydrolase fold; SPTR: C1XSD5 Esterase/lipase; PFAM: Prolyl oligopeptidase family YP_003684299.1 KEGG: tth:TTC1340 hypothetical protein; SPTR: C1XSD6 Putative uncharacterized protein YP_003684300.1 COGs: COG1115 Na+/alanine symporter; InterPro IPR001463:IPR001734; KEGG: ttj:TTHA1703 sodium-alanine symporter family protein; PFAM: sodium:alanine symporter; SPTR: C1XSD7 Amino acid carrier protein; TIGRFAM: amino acid carrier protein; PFAM: Sodium:alanine symporter family; TIGRFAM: amino acid carrier protein YP_003684301.1 COGs: COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase; InterPro IPR004507:IPR003382; KEGG: ttj:TTHA1917 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; SPTR: C1XSD8 Polyprenyl p-hydroxybenzoate/phenylacrylic acid decarboxylase; TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: Flavoprotein; TIGRFAM: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases YP_003684302.1 COGs: COG1968 Uncharacterized bacitracin resistance protein; InterPro IPR003824; KEGG: ttj:TTHA0172 undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; PRIAM: Undecaprenyl-diphosphatase; SPTR: C1XSD9 Undecaprenyl-diphosphatase; TIGRFAM: undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; TIGRFAM: undecaprenyl-diphosphatase UppP YP_003684303.1 COGs: COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; InterPro IPR018294:IPR001228; KEGG: ttj:TTHA0171 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; PRIAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; SPTR: C1XSE0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: Uncharacterized protein family UPF0007; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_003684304.1 COGs: COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; InterProIPR004424:IPR013750:IPR014721:IPR020568:IPR 006204; KEGG: ttj:TTHA0170 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein; SPTR: C1XSE1 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YP_003684305.1 COGs: COG4143 ABC-type thiamine transport system periplasmic component; InterPro IPR005948:IPR006059; KEGG: ttj:TTHA1808 ABC transporter, periplasmic substrate-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: C1XSE2 ABC transporter periplasmic binding protein, thiB subfamily; TIGRFAM: ABC transporter, periplasmic binding protein, thiB subfamily; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: ABC transporter periplasmic binding protein, thiB subfamily YP_003684306.1 COGs: COG1178 ABC-type Fe3+ transport system permease component; InterPro IPR000515; KEGG: ttj:TTHA1807 ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XSE3 ABC-type Fe3+ transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_003684307.1 KEGG: dge:Dgeo_2039 O-antigen polymerase; SPTR: C1XSE4 Putative uncharacterized protein YP_003684308.1 InterPro IPR001120:IPR012902; KEGG: ddr:Deide_06550 putative type IV pilin precursor (prepilin); SPTR: C1XSE5 Prepilin-type N-terminal cleavage/methylation domain-containing protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_003684309.1 InterPro IPR012902:IPR001120; KEGG: dra:DR_0548 pilin, type IV, putative; SPTR: C1XSE6 Prepilin-type N-terminal cleavage/methylation domain-containing protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_003684310.1 COGs: COG4636 conserved hypothetical protein; InterPro IPR008538:IPR012296; KEGG: ttj:TTHA1225 hypothetical protein; PFAM: protein of unknown function DUF820; SPTR: C1XSE7 Uncharacterized conserved protein; PFAM: Protein of unknown function (DUF820) YP_003684311.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XSE8 Integrase family protein; PFAM: Integrase core domain YP_003684312.1 COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterPro IPR000160:IPR001633; KEGG: pau:PA14_03720 sensory box GGDEF domain-containing protein; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; SPTR: C1XSE9 Diguanylate cyclase (GGDEF) domain-containing protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_003684313.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR014284:IPR007627:IPR013249:IPR013325:IPR 013324; KEGG: ddr:Deide_3p01870 putative RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: C1XSF0 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_003684314.1 InterPro IPR018764; KEGG: ddr:Deide_3p01861 hypothetical protein; PFAM: Anti-sigma K factor RskA; SPTR: C1XSF1 Uncharacterized conserved protein (DUF2337); PFAM: Anti-sigma-K factor rskA YP_003684315.1 COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933:IPR011650:IPR017150; KEGG: tth:TTC1334 carboxypeptidase G2 precursor; PFAM: peptidase M20; peptidase dimerisation domain protein; SPTR: C1XSF2 Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain YP_003684316.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XSF3 Integrase family protein; PFAM: Integrase core domain YP_003684317.1 COGs: COG4456 Virulence-associated protein and related protein; InterPro IPR007159; KEGG: eba:ebA7217 related to putative virulence-associated proteins and nitrogen regulatory protein NtrP; PFAM: SpoVT/AbrB domain protein; SPTR: C1XSF4 Virulence-associated protein; PFAM: SpoVT / AbrB like domain YP_003684318.1 COGs: COG1487 nucleic acid-binding protein contains PIN domain; InterPro IPR002716; KEGG: afr:AFE_0478 virulence-associated protein, putative; PFAM: PilT protein domain protein; SPTR: C1XSF5 Predicted nucleic acid-binding protein, contains PIN domain; PFAM: PIN domain YP_003684319.1 COGs: COG2606 conserved hypothetical protein; InterPro IPR007214; KEGG: ttj:TTHA1699 hypothetical protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; SPTR: C1XSF6 Uncharacterized conserved protein; PFAM: YbaK / prolyl-tRNA synthetases associated domain YP_003684320.1 KEGG: ttj:TTHA1700 hypothetical protein; SPTR: C1XSF7 Putative uncharacterized protein YP_003684321.1 COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: tth:TTC0412 L-ribulose-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; SPTR: C1XIU5 Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase; PFAM: Class II Aldolase and Adducin N-terminal domain YP_003684322.1 COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013149:IPR016040:IPR011032:IPR013154; KEGG: tth:TTC0411 dehydrogenase family protein (alcohol); PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; SPTR: C1XSG0 Theronine dehydrogenase-like Zn-dependent dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase YP_003684323.1 SPTR: C1XSG1 Putative uncharacterized protein YP_003684324.1 COGs: COG0387 Ca2+/H+ antiporter; InterPro IPR004713:IPR004798:IPR004837; KEGG: amr:AM1_2325 calcium/proton exchanger; PFAM: sodium/calcium exchanger membrane region; SPTR: C1XSG2 Calcium/proton exchanger Cax; TIGRFAM: calcium/proton antiporter, CaCA family; calcium/proton exchanger; PFAM: Sodium/calcium exchanger protein; TIGRFAM: calcium/proton exchanger; calcium/proton exchanger (cax) YP_003684325.1 COGs: COG1804 acyl-CoA transferase/carnitine dehydratase; InterPro IPR003673; KEGG: ttj:TTHA1887 CaiB/BaiF family protein; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; SPTR: C1XSG3 Predicted acyl-CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III YP_003684326.1 InterPro IPR002559:IPR012337; KEGG: cau:Caur_2446 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: C1XPT2 Transposase family protein; PFAM: Transposase DDE domain YP_003684327.1 COGs: COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein); InterPro IPR007210; KEGG: dra:DR_A0135 ABC transporter, periplasmic substrate-binding protein, putative; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SPTR: C1XSG5 Periplasmic glycine betaine/choline-binding (Lipo)protein of an ABC-type transport system (Osmoprotectant binding protein); PFAM: Substrate binding domain of ABC-type glycine betaine transport system YP_003684328.1 COGs: COG1174 ABC-type proline/glycine betaine transport systems permease component; InterPro IPR000515; KEGG: dra:DR_A0136 amino acid ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XSG6 ABC-type proline/glycine betaine transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_003684329.1 COGs: COG1125 ABC-type proline/glycine betaine transport systems ATPase components; InterPro IPR017871:IPR005892:IPR003439:IPR003593; KEGG: tex:Teth514_1201 glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XSG7 Glycine betaine/L-proline transport ATP binding subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter; TIGRFAM: glycine betaine/L-proline transport ATP binding subunit YP_003684330.1 COGs: COG1174 ABC-type proline/glycine betaine transport systems permease component; InterPro IPR000515; KEGG: dra:DR_A0138 amino acid ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XSG8 ABC-type proline/glycine betaine transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_003684331.1 KEGG: mac:MA2307 hypothetical protein; SPTR: C1XSG9 Putative uncharacterized protein YP_003684332.1 KEGG: ava:Ava_4960 hypothetical protein; SPTR: C1XSH0 Putative uncharacterized protein YP_003684333.1 COGs: COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); InterPro IPR013651:IPR011761; KEGG: ava:Ava_4961 hypothetical protein; PFAM: RimK domain protein ATP-grasp; SPTR: C1XSH1 RimK-like protein; PFAM: RimK-like ATP-grasp domain YP_003684334.1 KEGG: conserved hypothetical protein; SPTR: C1XSH2 Putative uncharacterized protein YP_003684335.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: ttj:TTHA1888 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XSH3 ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter YP_003684336.1 KEGG: tth:TTC1528 hypothetical protein; SPTR: C1XSH4 Putative uncharacterized protein YP_003684337.1 COGs: COG0315 Molybdenum cofactor biosynthesis enzyme; InterPro IPR002820; KEGG: tth:TTC1436 molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; SPTR: C1XSH5 GTP cyclohydrolase subunit MoaC; TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: MoaC family; TIGRFAM: molybdenum cofactor biosynthesis protein MoaC YP_003684338.1 COGs: COG2129 phosphoesterase related to the Icc protein; InterPro IPR004843; KEGG: tth:TTC1953 putative phosphohydrolase; PFAM: metallophosphoesterase; SPTR: C1XSH6 Predicted phosphoesterase, ICC; PFAM: Calcineurin-like phosphoesterase YP_003684339.1 COGs: COG1482 Phosphomannose isomerase; InterPro IPR011051:IPR014628:IPR001250:IPR014710; KEGG: cag:Cagg_1723 mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type I; PRIAM: Mannose-6-phosphate isomerase; SPTR: C1XSH7 Phosphomannose isomerase; PFAM: Phosphomannose isomerase type I; TIGRFAM: mannose-6-phosphate isomerase, class I YP_003684340.1 InterPro IPR017936:IPR012336:IPR000866:IPR012335; KEGG: tth:TTC0224 thiol-disulfide isomerase/thioredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: C1XSH8 Peroxiredoxin; PFAM: AhpC/TSA family YP_003684341.1 COGs: COG1276 Putative copper export protein; InterPro IPR008457; KEGG: rpc:RPC_2426 copper resistance D; PFAM: copper resistance D domain protein; SPTR: C1XSH9 Putative copper export protein; PFAM: Copper resistance protein D YP_003684342.1 COGs: COG2372 conserved hypothetical protein homolog of Cu resistance protein CopC; InterPro IPR007348:IPR014756:IPR014755; KEGG: ddr:Deide_3p01290 putative copper resistance protein CopC, precursor; PFAM: copper resistance protein CopC; SPTR: C1XSI0 Uncharacterized protein similar to copper resistance protein CopC; PFAM: Copper resistance protein CopC YP_003684343.1 COGs: COG2847 conserved hypothetical protein; InterPro IPR007410; KEGG: ttj:TTHA1943 hypothetical protein; PFAM: protein of unknown function DUF461; SPTR: C1XSI1 Uncharacterized conserved protein; PFAM: Protein of unknown function (DUF461) YP_003684344.1 COGs: COG4549 conserved hypothetical protein; InterPro IPR012533; KEGG: ddr:Deide_3p01280 conserved hypothetical protein, precursor; PFAM: nuclear export factor GLE1; SPTR: C1XSI2 Uncharacterized conserved protein; PFAM: Domain of unkown function (DUF1775) YP_003684345.1 COGs: COG0663 Carbonic anhydrase/acetyltransferase isoleucine patch superfamily; InterPro IPR001451:IPR011004; KEGG: ttj:TTHA1879 ferripyochelin-binding protein; SPTR: C1XSI3 Isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase YP_003684346.1 InterPro IPR020084:IPR000086:IPR015797:IPR020476; KEGG: ttj:TTHA1880 MutT/NUDIX family protein; PFAM: NUDIX hydrolase; SPTR: C1XSI4 ADP-ribose pyrophosphatase; PFAM: NUDIX domain YP_003684347.1 COGs: COG3342 conserved hypothetical protein; InterPro IPR014927:IPR010430; KEGG: ttj:TTHA1881 hypothetical protein; PFAM: protein of unknown function DUF1028; Putative peptidoglycan binding; SPTR: C1XSI5 Uncharacterized conserved protein; PFAM: Putative peptidoglycan binding domain; Family of unknown function (DUF1028) YP_003684348.1 COGs: COG1564 Thiamine pyrophosphokinase; InterPro IPR007371:IPR006282; KEGG: bbk:BARBAKC583_0128 thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase catalytic region; SPTR: C1XSI6 Thiamine pyrophosphokinase; TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase, vitamin B1 binding domain; Thiamin pyrophosphokinase, catalytic domain; TIGRFAM: thiamine pyrophosphokinase YP_003684349.1 COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR017871:IPR003439:IPR003593; KEGG: tth:TTC1059 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XSI7 ABC-type spermidine/putrescine transport system, ATPase component; PFAM: ABC transporter YP_003684350.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: ava:Ava_3779 CheA signal transduction histidine kinases (STHK); PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: C1XSI8 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; PFAM: Response regulator receiver domain YP_003684351.1 COGs: COG5002 Signal transduction histidine kinase; InterProIPR009082:IPR013656:IPR000014:IPR003594:IPR 003661:IPR005467:IPR003018:IPR004358; KEGG: tth:TTC0778 sensory transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; PRIAM: Histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; GAF domain protein; SPTR: C1XSI9 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_003684352.1 COGs: COG0785 Cytochrome c biogenesis protein; InterPro IPR003834; KEGG: ttj:TTHA1409 cytochrome c-type biogenesis protein CcdA; PFAM: cytochrome c biogenesis protein transmembrane region; SPTR: C1XSJ0 Cytochrome c biogenesis protein; PFAM: Cytochrome C biogenesis protein transmembrane region YP_003684353.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR005895:IPR003439:IPR003593; KEGG: tth:TTC1043 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XSJ1 Heme ABC exporter, ATP-binding protein CcmA; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter; TIGRFAM: heme ABC exporter, ATP-binding protein CcmA YP_003684354.1 COGs: COG2386 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR003544; KEGG: ttj:TTHA1407 cytochrome c-type biogenesis protein, heme exporter protein B; PFAM: cytochrome c-type biogenesis protein CcmB; SPTR: C1XSJ2 ABC-type transport system involved in cytochrome c biogenesis, permease component; PFAM: CcmB protein; TIGRFAM: heme exporter protein CcmB YP_003684355.1 COGs: COG0755 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR003557:IPR002541; KEGG: tth:TTC1041 heme exporter protein C; PFAM: cytochrome c assembly protein; SPTR: C1XSJ3 ABC-type transport system involved in cytochrome c biogenesis, permease component; PFAM: Cytochrome C assembly protein YP_003684356.1 KEGG: tth:TTC1040 hypothetical protein; SPTR: C1XSJ4 Putative uncharacterized protein YP_003684357.1 COGs: COG2332 Cytochrome c-type biogenesis protein CcmE; InterPro IPR012340:IPR004329; KEGG: ttj:TTHA1405 cytochrome c-type biogenesis protein CcmE; PFAM: CcmE/CycJ protein; SPTR: C1XSJ5 Cytochrome c-type biogenesis protein CcmE; PFAM: CcmE YP_003684358.1 COGs: COG1138 Cytochrome c biogenesis factor; InterPro IPR003567:IPR002541; KEGG: ttj:TTHA1404 cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; SPTR: C1XSJ6 Cytochrome c biogenesis factor; PFAM: Cytochrome C assembly protein; TIGRFAM: c-type cytochrome biogenesis protein CcmF YP_003684359.1 COGs: COG0526 Thiol-disulfide isomerase and thioredoxins; InterProIPR012335:IPR012336:IPR017937:IPR000866:IPR 017936:IPR004799; KEGG: ttj:TTHA1728 hypothetical protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: C1XSJ7 Thiol-disulfide isomerase-like thioredoxin; TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: Redoxin; TIGRFAM: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily YP_003684360.1 COGs: COG3088 Uncharacterized protein involved in biosynthesis of c-type cytochromes; InterPro IPR005616; KEGG: ttj:TTHA1402 cytochrome c-type biogenesis protein; PFAM: cytochrome C biogenesis protein; SPTR: C1XSJ9 Respiratory nitrite reductase specific cytochrome c biogenesis protein NrfF; PFAM: Cytochrome C biogenesis protein YP_003684361.1 InterProIPR009056:IPR003088:IPR019734:IPR013026:IPR 001440:IPR011990; KEGG: tth:TTC1035 hypothetical protein; PFAM: cytochrome c class I; TPR repeat-containing protein; SPTR: C1XSK0 Cytochrome c biogenesis factor; PFAM: Cytochrome c YP_003684362.1 COGs: COG0723 Rieske Fe-S protein; InterPro IPR017941; KEGG: ttj:TTHA1400 cytochrome complex Rieske iron-sulfur subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: C1XSK1 Rieske Fe-S protein; PFAM: Rieske [2Fe-2S] domain YP_003684363.1 COGs: COG0162 Tyrosyl-tRNA synthetase; InterPro IPR002942:IPR002305:IPR002307:IPR014729; KEGG: ttj:TTHA1399 tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; PRIAM: Tyrosine--tRNA ligase; SMART: RNA-binding S4 domain protein; SPTR: C1XSK2 Tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: S4 domain; tRNA synthetases class I (W and Y); TIGRFAM: tyrosyl-tRNA synthetase YP_003684364.1 KEGG: ttj:TTHA1398 hypothetical protein; SPTR: C1XSK5 Putative uncharacterized protein YP_003684365.1 InterPro IPR002583; KEGG: tth:TTC1031 30S ribosomal protein S20; PFAM: ribosomal protein S20; SPTR: C1XSK6 SSU ribosomal protein S20P; TIGRFAM: ribosomal protein S20; PFAM: Ribosomal protein S20; TIGRFAM: ribosomal protein S20 YP_003684366.1 KEGG: tth:TTC1029 hypothetical protein; SPTR: C1XSK7 Putative uncharacterized protein YP_003684367.1 COGs: COG0083 Homoserine kinase; InterProIPR014721:IPR000870:IPR020568:IPR006203:IPR 006204:IPR013750; KEGG: ttj:TTHA1394 homoserine kinase; PFAM: GHMP kinase; GHMP kinase domain protein; PRIAM: Homoserine kinase; SPTR: C1XSK8 Homoserine kinase; TIGRFAM: homoserine kinase; PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: homoserine kinase YP_003684368.1 COGs: COG0063 sugar kinase; InterPro IPR004443:IPR000631:IPR017953; KEGG: ttj:TTHA1393 hypothetical protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; SPTR: C1XSK9 YjeF-like protein, hydroxyethylthiazole kinase-related; TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: YjeF-related protein N-terminus; Carbohydrate kinase; TIGRFAM: yjeF C-terminal region, hydroxyethylthiazole kinase-related; yjeF N-terminal region YP_003684369.1 COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; InterPro IPR003000; KEGG: tth:TTC1026 hypothetical protein; PFAM: Silent information regulator protein Sir2; SPTR: C1XSL0 NAD-dependent protein deacetylase, SIR2 family; PFAM: Sir2 family YP_003684370.1 COGs: COG1160 GTPase; InterProIPR002917:IPR005225:IPR006073:IPR016484:IPR 003593; KEGG: tth:TTC1025 GTP-binding protein EngA; PFAM: GTP-binding protein HSR1-related; SMART: AAA ATPase; SPTR: C1XSL1 GTP-binding protein engA; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein domain YP_003684371.1 COGs: COG2318 conserved hypothetical protein; InterPro IPR007837; KEGG: bca:BCE_3491 hypothetical protein; PFAM: DinB family protein; SPTR: C1XSL2 Uncharacterized conserved protein; PFAM: DinB family YP_003684372.1 COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: sth:STH2179 glycerol-3-phosphate ABC transporter substarate-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: C1XSL3 Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: Bacterial extracellular solute-binding protein YP_003684373.1 COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: sth:STH2180 glycerol-3-phosphate ABC transporter permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XSL4 Carbohydrate ABC transporter membrane protein 2, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component YP_003684374.1 COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: gym:GYMC10_2001 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XSL5 Carbohydrate ABC transporter membrane protein 1, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component YP_003684375.1 COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: ttj:TTHA1390 acyltransferase family protein; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: C1XSL6 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: Acyltransferase YP_003684376.1 COGs: COG0112 Glycine/serine hydroxymethyltransferase; InterPro IPR015424:IPR001085:IPR019798:IPR015421; KEGG: ttj:TTHA1524 serine hydroxymethyltransferase; PFAM: glycine hydroxymethyltransferase; PRIAM: Glycine hydroxymethyltransferase; SPTR: C1XSL7 Serine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase YP_003684377.1 InterPro IPR012337:IPR002559; KEGG: cau:Caur_2446 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: C1XPT2 Transposase family protein; PFAM: Transposase DDE domain YP_003684378.1 KEGG: dge:Dgeo_0061 hypothetical protein; SPTR: C1XSL9 Putative uncharacterized protein YP_003684379.1 COGs: COG2905 signal-transduction protein containing cAMP-binding and CBS domains; InterPro IPR000644:IPR002912; KEGG: ttj:TTHA0474 acetoin utilization protein AcuB (acetoin dehydrogenase); PFAM: CBS domain containing protein; amino acid-binding ACT domain protein; SMART: CBS domain containing protein; SPTR: C1XSM0 CBS domain-containing protein; PFAM: CBS domain; ACT domain YP_003684380.1 COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286:IPR003085; KEGG: tth:TTC0104 putative T-histone deacetylase; PFAM: histone deacetylase superfamily; PRIAM: Histone deacetylase; SPTR: C1XSM1 Deacetylase, histone deacetylase/acetoin utilization protein; PFAM: Histone deacetylase domain YP_003684381.1 KEGG: bav:BAV1833 hypothetical protein; SPTR: C1XSM2 Putative uncharacterized protein YP_003684382.1 COGs: COG0095 Lipoate-protein ligase A; InterPro IPR004143; KEGG: bbr:BB2891 putative lipoate-protein ligase A; PFAM: biotin/lipoate A/B protein ligase; PRIAM: Lipoate--protein ligase; SPTR: C1XSM3 Lipoate-protein ligase A; PFAM: Biotin/lipoate A/B protein ligase family YP_003684383.1 COGs: COG3231 Aminoglycoside phosphotransferase; InterPro IPR011009:IPR002575; KEGG: ret:RHE_CH02947 putative aminoglycoside 3'-phosphotransferase protein; PFAM: aminoglycoside phosphotransferase; SPTR: C1XSM4 Aminoglycoside phosphotransferase; PFAM: Phosphotransferase enzyme family YP_003684384.1 COGs: COG1001 Adenine deaminase; InterPro IPR006680:IPR006679:IPR011059; KEGG: dal:Dalk_3756 adenine deaminase; PFAM: amidohydrolase; PRIAM: Adenine deaminase; SPTR: C1XSM5 Adenine deaminase; TIGRFAM: adenine deaminase; PFAM: Amidohydrolase family; TIGRFAM: adenine deaminase YP_003684385.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR016040:IPR002198:IPR002347; KEGG: pfu:PF0149 short chain dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: C1XSM6 Putative uncharacterized protein; PFAM: short chain dehydrogenase YP_003684386.1 InterPro IPR016181:IPR000182; KEGG: ttj:TTHA0176 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: C1XSM7 Acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_003684387.1 COGs: COG1278 Cold shock protein; InterProIPR011129:IPR012156:IPR002059:IPR012340:IPR 016027:IPR019844; KEGG: ttj:TTHA0175 cold shock protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; SPTR: C1XSM8 Cold-shock DNA-binding protein family; PFAM: 'Cold-shock' DNA-binding domain YP_003684388.1 COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterProIPR001305:IPR001623:IPR012724:IPR008971:IPR 002939:IPR003095:IPR018253; KEGG: ttj:TTHA0174 alternative chaperone protein DnaJ; PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; DnaJ central domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: C1XSM9 Chaperone protein dnaJ; TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ C terminal region; DnaJ central domain (4 repeats); DnaJ domain; TIGRFAM: chaperone protein DnaJ YP_003684389.1 COGs: COG0366 Glycosidase; InterPro IPR013781:IPR017853:IPR006047:IPR006589; KEGG: dge:Dgeo_0572 alpha amylase, catalytic region; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: C1XSN0 Glycosidase; PFAM: Alpha amylase, catalytic domain YP_003684390.1 KEGG: cvi:CV_2538 hypothetical protein; SPTR: C1XSN2 Putative uncharacterized protein YP_003684391.1 COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182:IPR016181; KEGG: aca:ACP_3350 acetyltransferase, GNAT family; PFAM: GCN5-related N-acetyltransferase; SPTR: C1XSN3 Acetyltransferase, ribosomal protein N-acetylase; PFAM: Acetyltransferase (GNAT) family YP_003684392.1 COGs: COG2808 Transcriptional regulator; InterPro IPR007396; KEGG: bwe:BcerKBAB4_3223 FMN-binding negative transcriptional regulator; PFAM: Negative transcriptional regulator; SPTR: C1XSN4 Transcriptional regulator, COG2808; PFAM: Putative FMN-binding domain YP_003684393.1 COGs: COG0075 Serine-pyruvate aminotransferase/ aspartate aminotransferase; InterPro IPR015421:IPR015424:IPR020578:IPR000192; KEGG: ttj:TTHA0173 aminotransferase, class V; PFAM: aminotransferase class V; SPTR: C1XSN5 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase; PFAM: Aminotransferase class-V YP_003684394.1 KEGG: ttj:TTHA1883 hypothetical protein; SPTR: C1XSN6 Putative uncharacterized protein YP_003684395.1 COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; InterPro IPR003959:IPR003593; KEGG: ttj:TTHA1884 recombination factor protein RarA; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; SPTR: C1XSN7 Recombination protein MgsA; PFAM: MgsA AAA+ ATPase C terminal; ATPase family associated with various cellular activities (AAA) YP_003684396.1 COGs: COG3327 Phenylacetic acid-responsive transcriptional repressor; InterPro IPR012906:IPR013225; KEGG: ttj:TTHA1876 repressor, phenylacetic acid catabolic pathway; PFAM: PaaX domain protein domain; PaaX domain protein; SPTR: C1XSN8 Phenylacetic acid-responsive transcriptional repressor; PFAM: PaaX-like protein; PaaX-like protein C-terminal domain YP_003684397.1 COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: dge:Dgeo_1415 MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; SPTR: C1XSN9 Putative efflux protein, MATE family; TIGRFAM: MATE efflux family protein; PFAM: MatE; TIGRFAM: putative efflux protein, MATE family YP_003684398.1 COGs: COG0441 Threonyl-tRNA synthetase; InterProIPR018163:IPR002314:IPR004154:IPR012947:IPR 012676:IPR018158:IPR012675:IPR002320:IPR004095:IPR006195; KEGG: ttj:TTHA1875 threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Threonyl/alanyl tRNA synthetase SAD; Anticodon-binding domain protein; TGS domain protein; SMART: Threonyl/alanyl tRNA synthetase SAD; SPTR: C1XSP0 Threonyl-tRNA synthetase; Ser-tRNA(Thr) hydrolase; TIGRFAM: threonyl-tRNA synthetase; PFAM: Anticodon binding domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetase class II core domain (G, H, P, S and T); TGS domain; TIGRFAM: threonyl-tRNA synthetase YP_003684399.1 COGs: COG3265 Gluconate kinase; InterPro IPR006001:IPR000623; KEGG: mxa:MXAN_0616 thermosensitive gluconokinase; PFAM: shikimate kinase; SPTR: C1XSP1 Gluconate kinase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: Shikimate kinase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family YP_003684400.1 InterPro IPR016196:IPR011701; KEGG: ttj:TTHA0314 hypothetical protein; PFAM: major facilitator superfamily MFS_1; SPTR: C1XSP2 Major Facilitator Superfamily transporter; PFAM: Major Facilitator Superfamily YP_003684401.1 KEGG: tth:TTC1668 hypothetical protein; SPTR: C1XSP3 Putative uncharacterized protein YP_003684402.1 COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151; KEGG: dra:DR_1308 protease, putative; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; peptidase S41; SPTR: C1XSP4 Periplasmic protease; PFAM: Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc) YP_003684403.1 COGs: COG1878 metal-dependent hydrolase; InterPro IPR007325:IPR017484; KEGG: ddr:Deide_15520 putative cyclase; putative predicted metal-dependent hydrolase; PFAM: cyclase family protein; SPTR: C1XSP5 Predicted metal-dependent hydrolase, COG1878; TIGRFAM: arylformamidase; PFAM: Putative cyclase; TIGRFAM: arylformamidase YP_003684404.1 COGs: COG1573 Uracil-DNA glycosylase; InterPro IPR005122; KEGG: ade:Adeh_1181 phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; SPTR: Q2IQ73 Phage SPO1 DNA polymerase-related protein; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase, family 4 YP_003684405.1 InterPro IPR002559; KEGG: tth:TT_P0158 hypothetical protein; PFAM: transposase IS4 family protein; SPTR: C1XPN1 Transposase family protein; PFAM: Transposase DDE domain YP_003684406.1 InterPro IPR017896:IPR001450:IPR017900; KEGG: ttj:TTHA0389 polyferredoxin; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C1XZI0 Dissimilatory sulfite reductase (Desulfoviridin), alpha/beta subunit; PFAM: 4Fe-4S binding domain YP_003684407.1 COGs: COG0350 Methylated DNA-protein cysteine methyltransferase; InterProIPR011991:IPR014048:IPR009057:IPR001497:IPR 008332:IPR018060; KEGG: bxe:Bxe_A4482 AraC family transcriptional regulator; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylguanine DNA methyltransferase ribonuclease domain protein; SMART: Helix-turn-helix, AraC domain; SPTR: C1XZI1 Transcriptional regulator, AraC family; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain; 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase YP_003684408.1 InterPro IPR000620; KEGG: ddr:Deide_03150 putative inner membrane transport protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: C1XZI2 Integral membrane protein DUF6; PFAM: EamA-like transporter family YP_003684409.1 SPTR: C1XZA5 Putative uncharacterized protein YP_003684410.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR016040:IPR000683:IPR004104; KEGG: kol:Kole_0987 oxidoreductase domain protein; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: C1XZA4 Predicted dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain YP_003684411.1 COGs: COG3718 Uncharacterized protein involved in inositol metabolism; InterPro IPR011051:IPR010669; KEGG: sus:Acid_1480 myo-inositol catabolism IolB domain-containing protein; PFAM: Myo-inositol catabolism IolB domain protein; SPTR: C1XZA3 Uncharacterized enzyme involved in inositol metabolism; PFAM: KduI/IolB family YP_003684412.1 COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034:IPR018356:IPR014036; KEGG: sth:STH793 DeoR family transcriptional regulator; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; SPTR: C1XZA2 Transcriptional regulator of sugar metabolism; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain YP_003684413.1 COGs: COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; InterProIPR000121:IPR008279:IPR018274:IPR013815:IPR 002192:IPR015813:IPR006319:IPR006318; KEGG: dge:Dgeo_0621 phosphoenolpyruvate synthase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilizing protein; PEP-utilising protein mobile region; SPTR: C1XZA1 Phosphoenolpyruvate synthase; TIGRFAM: phosphoenolpyruvate synthase; PFAM: PEP-utilising enzyme, TIM barrel domain; PEP-utilising enzyme, mobile domain; Pyruvate phosphate dikinase, PEP/pyruvate binding domain; TIGRFAM: phosphoenolpyruvate synthase YP_003684414.1 COGs: COG1806 conserved hypothetical protein; InterPro IPR005177; KEGG: dge:Dgeo_0622 hypothetical protein; PFAM: protein of unknown function DUF299; SPTR: C1XZA0 Uncharacterized conserved protein; PFAM: Domain of unknown function (DUF299) YP_003684415.1 COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR002937:IPR014105; KEGG: rca:Rcas_3488 zeta-phytoene desaturase; PFAM: amine oxidase; SPTR: C1XZ99 Phytoene desaturase; TIGRFAM: phytoene desaturase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase YP_003684416.1 COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR017940:IPR003439:IPR017871:IPR003593:IPR 011527:IPR001140; KEGG: dge:Dgeo_1385 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: C1XZ98 ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter transmembrane region; ABC transporter; TIGRFAM: ABC transporter, permease/ATP-binding protein YP_003684417.1 COGs: COG0822 NifU homolog involved in Fe-S cluster formation; InterPro IPR011341:IPR002871; KEGG: ttj:TTHA1736 iron-sulfur cluster biosynthesis protein IscU; PFAM: nitrogen-fixing NifU domain protein; SPTR: C1XZ97 SUF system FeS assembly protein, NifU family; TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: NifU-like N terminal domain; TIGRFAM: SUF system FeS assembly protein, NifU family YP_003684418.1 COGs: COG0520 Selenocysteine lyase; InterPro IPR015424:IPR010970:IPR000192:IPR015421; KEGG: tth:TTC1373 cysteine desulfhydrase/selenocysteine lyase; PFAM: aminotransferase class V; SPTR: C1XZ96 Cysteine desulfurase; TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurases, SufS subfamily YP_003684419.1 COGs: COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenase; InterPro IPR017941; KEGG: ttj:TTHA1841 putative dioxygenase ferredoxin subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: C1XZ95 Ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase; PFAM: Rieske [2Fe-2S] domain YP_003684420.1 COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR000825:IPR011542; KEGG: ttj:TTHA1840 SufD protein membrane protein; PFAM: SufBD protein; SPTR: C1XZ94 Iron-regulated ABC transporter permease protein SufD; TIGRFAM: FeS assembly protein SufD; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD, group 1 YP_003684421.1 COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR000825:IPR010231; KEGG: tth:TTC1488 ABC transporter ATP-binding protein; PFAM: SufBD protein; SPTR: C1XMU2 Iron-regulated ABC transporter membrane component SufB; TIGRFAM: FeS assembly protein SufB; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB YP_003684422.1 COGs: COG0396 ABC-type transport system involved in Fe-S cluster assembly ATPase component; InterPro IPR017871:IPR010230:IPR003593:IPR003439; KEGG: tth:TTC1487 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XZ91 Iron-regulated ABC transporter ATPase subunit SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC YP_003684423.1 InterPro IPR001440:IPR011990:IPR019734:IPR013026; KEGG: ttj:TTHA1837 hypothetical protein; PFAM: TPR repeat-containing protein; SPTR: C1XZ90 TPR repeat-containing protein; PFAM: Tetratricopeptide repeat; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003684424.1 COGs: COG2224 Isocitrate lyase; InterPro IPR006254:IPR018523:IPR000918:IPR015813; KEGG: ttj:TTHA1836 isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; SPTR: C1XZ89 Isocitrate lyase; TIGRFAM: isocitrate lyase; PFAM: Isocitrate lyase family; TIGRFAM: isocitrate lyase YP_003684425.1 COGs: COG1802 Transcriptional regulators; InterPro IPR011991:IPR000524:IPR011711; KEGG: dtu:Dtur_0483 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C1XHK8 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain YP_003684426.1 InterPro IPR013974; KEGG: tac:Ta1392 hypothetical protein; PFAM: SAF domain protein; SPTR: C1XXK2 Altronate dehydratase; PFAM: SAF domain YP_003684427.1 COGs: COG2721 Altronate dehydratase; InterPro IPR007392; KEGG: rxy:Rxyl_2590 D-galactarate dehydratase/altronate hydrolase-like protein; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SPTR: C1XXK1 Altronate dehydratase; PFAM: D-galactarate dehydratase / Altronate hydrolase, C terminus YP_003684428.1 COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR016040:IPR006139:IPR006140; KEGG: bpt:Bpet0409 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; SPTR: C1XXK0 Phosphoglycerate dehydrogenase-like oxidoreductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_003684429.1 COGs: COG2055 Malate/L-lactate dehydrogenase; InterPro IPR003767; KEGG: mno:Mnod_3707 malate/L-lactate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase; SPTR: C1XXJ9 Malate/lactate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase YP_003684430.1 COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: atc:AGR_L_3070 ABC transporter, periplasmic substrate-binding protein, solute-binding family 1; PFAM: extracellular solute-binding protein family 1; SPTR: C1XXJ8 Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: Bacterial extracellular solute-binding protein YP_003684431.1 COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: atc:AGR_L_3068 ABC transporter, permease protein, MalFG family; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XXJ7 Carbohydrate ABC transporter membrane protein 1, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component YP_003684432.1 COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: mfa:Mfla_2350 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XXJ6 Carbohydrate ABC transporter membrane protein 2, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component YP_003684433.1 COGs: COG2407 L-fucose isomerase and related protein; KEGG: dtu:Dtur_0491 L-fucose isomerase-like protein; SPTR: C1XXJ5 Putative uncharacterized protein YP_003684434.1 COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611:IPR002173; KEGG: rsp:RSP_4029 carbohydrate kinase, PfkB; PFAM: PfkB domain protein; SPTR: C1XXJ4 Sugar kinase, ribokinase; PFAM: pfkB family carbohydrate kinase YP_003684435.1 COGs: COG3684 Tagatose-1 6-bisphosphate aldolase; InterPro IPR013785:IPR002915; KEGG: bja:bll6350 tagatose 1,6-diphosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; PRIAM: Tagatose-bisphosphate aldolase; SPTR: C1XXJ3 Tagatose-1,6-bisphosphate aldolase; PFAM: DeoC/LacD family aldolase; TIGRFAM: tagatose 1,6-diphosphate aldolase YP_003684436.1 InterPro IPR003779:IPR010195; KEGG: ret:RHE_CH01715 hypothetical protein; PFAM: Carboxymuconolactone decarboxylase; SPTR: C1XXJ2 Alkylhydroperoxidase AhpD family core domain; TIGRFAM: uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase family; TIGRFAM: uncharacterized peroxidase-related enzyme; alkylhydroperoxidase AhpD family core domain YP_003684437.1 COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterProIPR018062:IPR000005:IPR012287:IPR018060:IPR 009057; KEGG: hoh:Hoch_2463 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: C1XXJ1 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_003684438.1 InterPro IPR004360:IPR018146; KEGG: hoh:Hoch_2462 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: C1XXJ0 Lactoylglutathione lyase-like lyase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_003684439.1 InterPro IPR014922; KEGG: ttr:Tter_2394 domain of unknown function DUF1801; PFAM: Domain of unknown function DUF1801; SPTR: C1XXI9 Putative uncharacterized protein; PFAM: Domain of unknown function (DU1801) YP_003684440.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR016040:IPR000683:IPR004104; KEGG: mmw:Mmwyl1_0536 oxidoreductase domain-containing protein; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: C1XXI6 Predicted dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain YP_003684441.1 KEGG: ddr:Deide_15980 hypothetical protein; SPTR: C1XXI5 Putative uncharacterized protein YP_003684442.1 COGs: COG0554 Glycerol kinase; InterPro IPR018483:IPR018485:IPR005999:IPR018484; KEGG: gme:Gmet_1676 glycerol kinase; PFAM: Carbohydrate kinase, FGGY-like; SPTR: C1XXI4 Glycerol kinase; TIGRFAM: glycerol kinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: glycerol kinase YP_003684443.1 InterPro IPR009050; KEGG: fal:FRAAL6793 hypothetical protein; SPTR: C1XXI3 Hemoglobin; PFAM: Bacterial-like globin YP_003684444.1 InterPro IPR013838; KEGG: ttj:TTHA0300 hypothetical protein; SPTR: C1XXI2 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2905) YP_003684445.1 KEGG: ppd:Ppro_2417 putative type IV pilus assembly protein PilO; SPTR: C1XXI1 Putative uncharacterized protein YP_003684446.1 COGs: COG0495 Leucyl-tRNA synthetase; InterProIPR014729:IPR002302:IPR009008:IPR009080:IPR 001412:IPR015413:IPR013155; KEGG: tth:TTC1825 leucyl-tRNA synthetase; PFAM: tRNA synthetase valyl/leucyl anticodon-binding; tRNA synthetase class I (M); SPTR: C1XM53 Leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family YP_003684447.1 KEGG: hypothetical protein LOC762216; SPTR: C1XXH8 Putative uncharacterized protein YP_003684448.1 InterPro IPR002559; KEGG: tth:TT_P0158 hypothetical protein; PFAM: transposase IS4 family protein; SPTR: C1XPN1 Transposase family protein; PFAM: Transposase DDE domain YP_003684449.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867:IPR011006; KEGG: ttj:TTHA1002 response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein; SPTR: C1XXH5 Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_003684450.1 KEGG: hypothetical protein; SPTR: C1XXH4 Putative uncharacterized protein YP_003684451.1 COGs: COG0042 tRNA-dihydrouridine synthase; InterPro IPR001269:IPR018517:IPR004653:IPR013785; KEGG: mxa:MXAN_2283 tRNA-dihydrouridine synthase A; PFAM: dihydrouridine synthase DuS; SPTR: C1XXH3 tRNA dihydrouridine synthase A; TIGRFAM: TIM-barrel protein, yjbN family; PFAM: Dihydrouridine synthase (Dus); TIGRFAM: tRNA dihydrouridine synthase A YP_003684452.1 KEGG: tth:TTC0857 hypothetical protein; SPTR: C1XXH2 Putative uncharacterized protein YP_003684453.1 COGs: COG0761 Penicillin tolerance protein; InterPro IPR003451; KEGG: tth:TTC1983 LytB protein; PFAM: LytB protein; PRIAM: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SPTR: C1XXH1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) YP_003684454.1 COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake; InterPro IPR003488; KEGG: ttj:TTHA0121 competence protein DprA (smf protein (DNA processing chain A)); PFAM: SMF family protein; SPTR: C1XXH0 DNA protecting protein DprA; TIGRFAM: DNA protecting protein DprA; PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA YP_003684455.1 COGs: COG1159 GTPase; InterProIPR015946:IPR006073:IPR009019:IPR002917:IPR 004044:IPR005225:IPR005662; KEGG: ttj:TTHA0120 GTP-binding protein Era; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; SPTR: C1XXG9 GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: KH domain; GTPase of unknown function; TIGRFAM: GTP-binding protein Era; small GTP-binding protein domain YP_003684456.1 COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: gvi:gll2184 hypothetical protein; PFAM: LmbE family protein; SPTR: C1XXG8 Uncharacterized LmbE-like protein; PFAM: GlcNAc-PI de-N-acetylase YP_003684457.1 COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR001451:IPR011004; KEGG: ttj:TTHA0119 putative acetyltransferase; SPTR: C1XXG7 Acetyltransferase (Isoleucine patch superfamily) YP_003684458.1 KEGG: dge:Dgeo_1941 hypothetical protein; SPTR: C1XXG6 Putative uncharacterized protein YP_003684459.1 COGs: COG3899 ATPase; InterPro IPR011990:IPR005158:IPR011717:IPR013026; KEGG: mxa:MXAN_7321 AfsR/DnrI/RedD family transcriptional regulator; PFAM: transcriptional activator domain; Tetratricopeptide TPR_4; SPTR: C1XXG5 Putative transcriptional regulator; PFAM: Bacterial transcriptional activator domain YP_003684460.1 KEGG: Hypothetical protein CBG11233; SPTR: C1XXG4 Putative uncharacterized protein YP_003684461.1 KEGG: ttj:TTHA1869 hypothetical protein; SPTR: C1XXG3 Putative uncharacterized protein YP_003684462.1 KEGG: ank:AnaeK_0087 hypothetical protein; SPTR: C1XXG2 Putative uncharacterized protein YP_003684463.1 COGs: COG4585 Signal transduction histidine kinase; InterProIPR003594:IPR017205:IPR011712:IPR005467:IPR 004358; KEGG: sti:Sthe_1551 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PRIAM: Histidine kinase; SMART: ATP-binding region ATPase domain protein; SPTR: C1XXG1 Signal transduction histidine kinase, COG4585; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_003684464.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792:IPR001789:IPR011991:IPR011006; KEGG: sti:Sthe_1552 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: C1XXG0 Two component transcriptional regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_003684465.1 COGs: COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase; InterPro IPR000583:IPR000836:IPR005854:IPR017932; KEGG: ttj:TTHA1520 amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; SPTR: C1XXF8 Amidophosphoribosyltransferase; TIGRFAM: amidophosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; Glutamine amidotransferases class-II; TIGRFAM: amidophosphoribosyltransferase YP_003684466.1 COGs: COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase synthetase domain; InterPro IPR010074:IPR010918:IPR016188:IPR000728; KEGG: ttj:TTHA1519 phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; PRIAM: Phosphoribosylformylglycinamidine synthase; SPTR: C1XXF7 Phosphoribosylformylglycinamidine synthase subunit II; TIGRFAM: phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylformylglycinamidine synthase II YP_003684467.1 COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR006439:IPR005834; KEGG: ttj:TTHA1518 2-haloalkanoic acid dehalogenase-related protein; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: C1XXF6 Haloacid dehalogenase superfamily enzyme, subfamily IA; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E YP_003684468.1 COGs: COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase glutamine amidotransferase domain; InterPro IPR010075:IPR017926; KEGG: tth:TTC1153 phosphoribosylformylglycinamidine synthase I; PRIAM: Phosphoribosylformylglycinamidine synthase; SPTR: C1XXF5 Phosphoribosylformylglycinamidine synthase subunit I; TIGRFAM: phosphoribosylformylglycinamidine synthase I; PFAM: Glutamine amidotransferase class-I; TIGRFAM: phosphoribosylformylglycinamidine synthase I YP_003684469.1 COGs: COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase PurS component; InterPro IPR003850; KEGG: ttj:TTHA1516 hypothetical protein; PFAM: phosphoribosylformylglycinamidine synthetase PurS; SPTR: C1XXF4 Phosphoribosylformylglycinamidine synthase, purS protein; TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: Phosphoribosylformylglycinamidine (FGAM) synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase, purS protein YP_003684470.1 COGs: COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; InterPro IPR013816:IPR001636:IPR018236; KEGG: tth:TTC1151 phosphoribosylamidoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; PRIAM: Phosphoribosylaminoimidazolesuccinocarboxamide synthase; SPTR: C1XXF3 Phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase YP_003684471.1 COGs: COG0015 Adenylosuccinate lyase; InterProIPR000362:IPR003031:IPR008948:IPR020557:IPR 019468:IPR004769; KEGG: tth:TTC1149 putative adenylosuccinate lyase protein; PFAM: fumarate lyase; Adenylosuccinate lyase-like; SPTR: C1XXF2 Adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: Lyase; Adenylosuccinate lyase C-terminus; TIGRFAM: adenylosuccinate lyase YP_003684472.1 KEGG: dtu:Dtur_0840 hypothetical protein; SPTR: C1XXF1 Putative uncharacterized protein YP_003684473.1 COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: ttj:TTHA1008 ABC transporter, permease protein; PFAM: protein of unknown function DUF214; SPTR: C1XXF0 ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease YP_003684474.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR017871:IPR003439:IPR003593; KEGG: ttj:TTHA1007 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XXE9 ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter YP_003684475.1 COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: ttj:TTHA1006 hypothetical protein; PFAM: secretion protein HlyD family protein; SPTR: C1XXE8 RND family efflux transporter, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_003684476.1 InterPro IPR003423; KEGG: dge:Dgeo_2118 hypothetical protein; PFAM: outer membrane efflux protein; SPTR: C1XXE7 Outer membrane protein; PFAM: Outer membrane efflux protein YP_003684477.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: dge:Dgeo_1523 outer membrane efflux protein; PFAM: outer membrane efflux protein; SPTR: C1XXE6 Outer membrane protein; PFAM: Outer membrane efflux protein YP_003684478.1 KEGG: ach:Achl_3483 molybdenum ABC transporter, periplasmic molybdate-binding protein; SPTR: C1XXE5 Putative uncharacterized protein; PFAM: NPCBM-associated, NEW3 domain of alpha-galactosidase YP_003684479.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR011006:IPR001789:IPR001867; KEGG: dge:Dgeo_1522 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: C1XXE4 Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_003684480.1 COGs: COG5002 Signal transduction histidine kinase; InterProIPR003660:IPR009082:IPR003594:IPR003661:IPR 005467:IPR004358; KEGG: dge:Dgeo_1521 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PRIAM: Histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SPTR: C1XXE3 Sensor protein; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003684481.1 COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005833:IPR005834:IPR006402:IPR006439; KEGG: ttj:TTHA1509 putative hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: C1XXE2 Haloacid dehalogenase superfamily enzyme, subfamily IA; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; REG-2-like, HAD superfamily (subfamily IA) hydrolase YP_003684482.1 COGs: COG0599 gamma-carboxymuconolactone decarboxylase subunit; InterPro IPR003779; KEGG: ttj:TTHA1508 gamma-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; SPTR: C1XXE1 Uncharacterized protein similar to gamma-carboxymuconolactone decarboxylase subunit; PFAM: Carboxymuconolactone decarboxylase family; TIGRFAM: alkylhydroperoxidase AhpD family core domain YP_003684483.1 InterPro IPR020084:IPR015797:IPR003563:IPR000086; KEGG: art:Arth_1522 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: C1XXE0 ADP-ribose pyrophosphatase; PFAM: NUDIX domain; TIGRFAM: mutator mutT protein YP_003684484.1 InterPro IPR012337:IPR009057:IPR001584; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XXD9 Integrase family protein; PFAM: Integrase core domain YP_003684485.1 COGs: COG1278 Cold shock protein; InterProIPR011129:IPR012156:IPR002059:IPR012340:IPR 016027:IPR019844; KEGG: ttj:TTHA0359 cold shock protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; SPTR: C1XXD8 Cold-shock DNA-binding protein family; PFAM: 'Cold-shock' DNA-binding domain YP_003684486.1 COGs: COG3239 Fatty acid desaturase; InterPro IPR005804; KEGG: gka:GK2062 hypothetical protein; PFAM: fatty acid desaturase; SPTR: C1XXD7 Fatty acid desaturase; PFAM: Fatty acid desaturase YP_003684487.1 COGs: COG0496 acid phosphatase; InterPro IPR002828; KEGG: tth:TTC1625 survival protein SurE; PFAM: Survival protein SurE; PRIAM: 5'-nucleotidase; SPTR: C1XXD6 3'-nucleotidase; 5'-nucleotidase; exopolyphosphatase; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; TIGRFAM: 5'/3'-nucleotidase SurE YP_003684488.1 InterPro IPR001440:IPR011990:IPR013026; KEGG: ttj:TTHA0339 hypothetical protein; PFAM: TPR repeat-containing protein; SPTR: C1XXD5 Tetratricopeptide repeat protein YP_003684489.1 InterPro IPR011990:IPR013026; KEGG: ttj:TTHA0340 hypothetical protein; SPTR: C1XXD4 Putative uncharacterized protein YP_003684490.1 COGs: COG2860 membrane protein; InterPro IPR005115; KEGG: tth:TTC1437 transporter; PFAM: protein of unknown function UPF0126; SPTR: C1XXD3 Predicted membrane protein, COG2860; PFAM: UPF0126 domain YP_003684491.1 COGs: COG0245 2C-methyl-D-erythritol 2 4-cyclodiphosphate synthase; InterPro IPR003526:IPR020555; KEGG: tth:TTC1438 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; PRIAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; SPTR: C1XXD2 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: YgbB family; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_003684492.1 COGs: COG2316 hydrolase (HD superfamily); InterPro IPR003607:IPR006675:IPR006674; KEGG: tth:TTC1439 HAD superfamily hydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: C1XXD1 Metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG YP_003684493.1 KEGG: hau:Haur_0953 GCN5-related N-acetyltransferase; SPTR: C1XXD0 Putative uncharacterized protein YP_003684494.1 COGs: COG2383 conserved hypothetical protein; InterPro IPR007014; KEGG: tth:TTC1440 hypothetical protein; PFAM: FUN14 family protein; SPTR: C1XXC9 Uncharacterized conserved protein; PFAM: FUN14 family YP_003684495.1 COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; InterPro IPR002698; KEGG: tth:TTC1803 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; SPTR: C1XXC8 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase family YP_003684496.1 COGs: COG0306 Phosphate/sulphate permease; InterPro IPR001204; KEGG: sti:Sthe_0014 phosphate transporter; PFAM: phosphate transporter; SPTR: C1XXC7 Phosphate/sulfate permease; PFAM: Phosphate transporter family YP_003684497.1 COGs: COG1392 Phosphate transport regulator (distant homolog of PhoU); InterPro IPR018445; KEGG: ttr:Tter_0128 protein of unknown function DUF47; PFAM: Putitive phosphate transport regulator; SPTR: C1XXC6 Phosphate transport regulator related to PhoU; PFAM: Protein of unknown function DUF47; TIGRFAM: conserved hypothetical protein TIGR00153 YP_003684498.1 COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR013786:IPR006091:IPR013764:IPR009100:IPR 009075:IPR006089:IPR006092:IPR006090; KEGG: ttj:TTHA1916 acyl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: C1XXC5 Butyryl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain YP_003684499.1 KEGG: tth:TT_P0163 hypothetical protein; SPTR: C1XXC4 Putative uncharacterized protein YP_003684500.1 COGs: COG0031 Cysteine synthase; InterProIPR005856:IPR001926:IPR000634:IPR001216:IPR 005859; KEGG: tth:TTC1636 cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: C1XXC3 Cysteine synthase; TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthase A; cysteine synthases YP_003684501.1 COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; InterPro IPR001179; KEGG: ttj:TTHA0346 peptidyl-prolyl cis-trans isomerase; PFAM: peptidylprolyl isomerase FKBP-type; SPTR: C1XXC2 Peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase YP_003684502.1 KEGG: CG2930 gene product from transcript CG2930-RD; SPTR: C1XXC1 Putative uncharacterized protein YP_003684503.1 KEGG: gbm:Gbem_1799 Fibronectin type III domain protein; SPTR: C1XXC0 Putative uncharacterized protein YP_003684504.1 KEGG: tth:TTC0272 hypothetical protein; SPTR: C1XXB9 Putative uncharacterized protein YP_003684505.1 COGs: COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain; KEGG: tth:TTC0271 putative cytoplasmic protein; SPTR: C1XXB8 Putative uncharacterized protein YP_003684506.1 COGs: COG1239 Mg-chelatase subunit ChlI; KEGG: ttj:TTHA0634 magnesium chelatase related protein; SPTR: C1XXB7 Mg-chelatase subunit ChlI YP_003684507.1 COGs: COG1556 conserved hypothetical protein; InterPro IPR003741; KEGG: tth:TTC1002 hypothetical protein; PFAM: protein of unknown function DUF162; SPTR: C1XXB6 Uncharacterized conserved protein; PFAM: Uncharacterised ACR, YkgG family COG1556 YP_003684508.1 COGs: COG1139 conserved hypothetical protein containing a ferredoxin-like domain; InterProIPR017896:IPR012285:IPR004452:IPR017900:IPR 003741:IPR009051; KEGG: tth:TTC1001 iron-sulfur cluster-binding protein; PFAM: protein of unknown function DUF162; SPTR: C1XXB5 (4Fe-4S) cluster-containing protein; TIGRFAM: iron-sulfur cluster binding protein; PFAM: Domain of unknown function (DUF3390); Uncharacterised ACR, YkgG family COG1556; TIGRFAM: 2[4Fe-4S] protein, putative YP_003684509.1 COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017; KEGG: ttj:TTHA1365 putative iron-sulfur protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: C1XXB4 Fe-S oxidoreductase; PFAM: Cysteine-rich domain YP_003684510.1 COGs: COG2819 hydrolase of the alpha/beta superfamily; InterPro IPR000801; KEGG: fno:Fnod_0083 putative esterase; PFAM: putative esterase; SPTR: C1XXB3 Predicted hydrolase of alpha/beta superfamily; PFAM: Putative esterase YP_003684511.1 COGs: COG0642 Signal transduction histidine kinase; InterProIPR009082:IPR003660:IPR003594:IPR003661:IPR 005467:IPR004358; KEGG: ttj:TTHA1363 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: C1XXB2 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003684512.1 InterPro IPR002559; KEGG: tth:TT_P0158 hypothetical protein; PFAM: transposase IS4 family protein; SPTR: C1XPN1 Transposase family protein; PFAM: Transposase DDE domain YP_003684513.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001867:IPR001789:IPR011991:IPR011006; KEGG: ttj:TTHA1362 response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein; SPTR: C1XXA9 Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_003684514.1 KEGG: ttj:TTHA1361 hypothetical protein; SPTR: C1XXA8 Putative uncharacterized protein YP_003684515.1 COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611:IPR002173; KEGG: dth:DICTH_0637 ribokinase:carbohydrate kinase, PfkB; PFAM: PfkB domain protein; SPTR: C1XXA7 Sugar kinase, ribokinase; PFAM: pfkB family carbohydrate kinase YP_003684516.1 COGs: COG0176 Transaldolase; InterPro IPR001585:IPR018225:IPR013785; KEGG: amr:AM1_1655 transaldolase, putative; PFAM: Transaldolase; SPTR: C1XXA6 Transaldolase; PFAM: Transaldolase; TIGRFAM: transaldolase, putative, TalC family YP_003684517.1 COGs: COG2374 extracellular nuclease; InterPro IPR005135; KEGG: gvi:gll4077 hypothetical protein; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: C1XXA5 Predicted extracellular nuclease; PFAM: Endonuclease/Exonuclease/phosphatase family YP_003684518.1 COGs: COG2409 drug exporter of the RND superfamily; InterPro IPR000731; KEGG: ddr:Deide_21640 conserved hypothetical protein, precursor; putative membrane protein; SPTR: C1XXA4 Predicted RND superfamily drug exporter; PFAM: MMPL family YP_003684519.1 COGs: COG1087 UDP-glucose 4-epimerase; InterPro IPR016040:IPR001509:IPR005886; KEGG: nca:Noca_4161 UDP-galactose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: C1XXA3 UDP-galactose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: UDP-glucose-4-epimerase YP_003684520.1 COGs: COG0516 IMP dehydrogenase/GMP reductase; InterProIPR000644:IPR001093:IPR018529:IPR005990:IPR 013785:IPR015875; KEGG: ttj:TTHA0432 IMP dehydrogenase/GMP reductase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; PRIAM: IMP dehydrogenase; SMART: CBS domain containing protein; SPTR: C1XXA2 Inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain; IMP dehydrogenase / GMP reductase domain; TIGRFAM: inosine-5'-monophosphate dehydrogenase YP_003684521.1 InterProIPR011990:IPR001440:IPR013105:IPR013026:IPR 019734; KEGG: ddr:Deide_03890 conserved hypothetical protein, precursor; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SPTR: C1XXA1 Tetratricopeptide repeat protein; PFAM: Tetratricopeptide repeat YP_003684522.1 COGs: COG5421 Transposase; InterPro IPR012337:IPR002559; KEGG: dsy:DSY0689 hypothetical protein; PFAM: transposase IS4 family protein; SPTR: C1XVD6 Transposase; PFAM: Transposase DDE domain YP_003684523.1 KEGG: ddr:Deide_03890 conserved hypothetical protein, precursor; SPTR: C1XX99 Putative uncharacterized protein YP_003684524.1 COGs: COG0394 Protein-tyrosine-phosphatase; InterPro IPR017867; KEGG: sat:SYN_00054 phosphotyrosine protein phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; SPTR: C1XX98 Protein tyrosine phosphatase; PFAM: Low molecular weight phosphotyrosine protein phosphatase YP_003684525.1 COGs: COG0394 Protein-tyrosine-phosphatase; InterPro IPR017867; KEGG: tth:TTC1502 arsenate reductase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; SPTR: C1XX97 Protein tyrosine phosphatase; PFAM: Low molecular weight phosphotyrosine protein phosphatase YP_003684526.1 KEGG: ttj:TTHA0433 hypothetical protein; SPTR: C1XX96 Putative uncharacterized protein YP_003684527.1 KEGG: ttj:TTHA0434 hypothetical protein; SPTR: C1XX95 Putative uncharacterized protein YP_003684528.1 COGs: COG1164 Oligoendopeptidase F; InterPro IPR004438:IPR001567:IPR013647; KEGG: cag:Cagg_0130 oligoendopeptidase F; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; SPTR: C1XX94 Oligoendopeptidase F; TIGRFAM: oligoendopeptidase F; PFAM: Oligopeptidase F; Peptidase family M3; TIGRFAM: oligoendopeptidase F YP_003684529.1 COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR001959:IPR010095; KEGG: rmr:Rmar_2881 transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; putative transposase IS891/IS1136/IS1341 family; SPTR: C1XYL2 Transposase, IS605 OrfB family, central region; TIGRFAM: transposase, IS605 OrfB family; PFAM: Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region; transposase, putative, N-terminal domain YP_003684530.1 COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209:IPR018247; KEGG: ttj:TTHA1868 extracellular serine protease; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: C1XX92 Subtilisin-like serine protease; PFAM: Subtilase family YP_003684531.1 COGs: COG2096 conserved hypothetical protein; InterPro IPR017858:IPR016030:IPR002779; KEGG: ttj:TTHA1926 ATP:cob(I)alamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; PRIAM: Cob(I)yrinic acid a,c-diamide adenosyltransferase; SPTR: C1XX91 ATP:cob(I)alamin adenosyltransferase; TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase YP_003684532.1 COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: ddr:Deide_12970 putative iron siderophore/cobalamin (vitamine B12) ABC transporter, periplasmic component; PFAM: periplasmic binding protein; SPTR: C1XX90 ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein YP_003684533.1 KEGG: ttj:TTHA1925 hypothetical protein; SPTR: C1XX89 Putative uncharacterized protein YP_003684534.1 COGs: COG2319 FOG: WD40 repeat; InterProIPR015943:IPR020472:IPR011046:IPR019775:IPR 019781:IPR019782:IPR017986:IPR006530:IPR001680; KEGG: ter:Tery_3923 WD-40 repeat-containing protein; PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat protein; SPTR: C1XX88 WD-40 repeat-containing protein; PFAM: WD domain, G-beta repeat YP_003684535.1 COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase; InterPro IPR008988:IPR004143:IPR003142:IPR004408; KEGG: rmr:Rmar_0108 biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein; SPTR: C1XX87 BirA, biotin-(Acetyl-CoA-carboxylase) ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: Biotin protein ligase C terminal domain; Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region YP_003684536.1 COGs: COG1268 conserved hypothetical protein; InterPro IPR003784; KEGG: ttj:TTHA0904 biotin biosynthesis protein BioY; PFAM: BioY protein; SPTR: C1XX86 Uncharacterized conserved protein; PFAM: BioY family YP_003684537.1 COGs: COG1335 Amidase related to nicotinamidase; InterPro IPR000868; KEGG: ttj:TTHA0328 isochorismatase; PFAM: isochorismatase hydrolase; SPTR: C1XX85 Nicotinamidase-like amidase; PFAM: Isochorismatase family YP_003684538.1 COGs: COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase; InterPro IPR011257:IPR003265; KEGG: ttj:TTHA0329 DNA-3-methyladenine glycosidase; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; SPTR: C1XX84 DNA-3-methyladenine glycosylase II; PFAM: HhH-GPD superfamily base excision DNA repair protein YP_003684539.1 KEGG: lfe:LAF_0065 exonuclease SbcC; SPTR: C1XX81 Putative uncharacterized protein YP_003684540.1 KEGG: ttj:TTHA0330 hypothetical protein; SPTR: C1XX80 Putative uncharacterized protein YP_003684541.1 KEGG: bld:BLi03444 hypothetical protein; SPTR: C1XX79 Putative uncharacterized protein; PFAM: EamA-like transporter family YP_003684542.1 COGs: COG1387 Histidinol phosphatase and related hydrolase of the PHP family; InterPro IPR010140:IPR016195:IPR004013; KEGG: tth:TTC1652 histidinol-phosphatase; PFAM: PHP domain protein; SPTR: C1XX78 Histidinol-phosphate phosphatase; TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain; TIGRFAM: histidinol phosphate phosphatase HisJ family YP_003684543.1 COGs: COG1387 Histidinol phosphatase and related hydrolase of the PHP family; InterProIPR003583:IPR003141:IPR016195:IPR010996:IPR 004013; KEGG: dge:Dgeo_1609 PHP-like protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; Helix-hairpin-helix DNA-binding class 1; SPTR: C1XX77 PHP family phosphohydrolase, histidinol phosphatase; PFAM: PHP domain YP_003684544.1 COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterProIPR012999:IPR013027:IPR006258:IPR004099:IPR 000815:IPR001327:IPR016156; KEGG: ttj:TTHA0233 pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SPTR: C1XX76 Dihydrolipoyl dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase YP_003684545.1 InterPro IPR008815; KEGG: kol:Kole_1318 S23 ribosomal protein; PFAM: S23 ribosomal protein; SPTR: C1XX75 S23 ribosomal protein; PFAM: S23 ribosomal protein YP_003684546.1 COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterProIPR004167:IPR001078:IPR000089:IPR003016:IPR 011053; KEGG: ttj:TTHA0232 branched-chain alpha-keto acid dehydrogenase subunit E2; PFAM: catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; biotin/lipoyl attachment domain-containing protein; SPTR: C1XX74 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme YP_003684547.1 COGs: COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit; InterPro IPR015941:IPR009014:IPR005475:IPR005476; KEGG: ttj:TTHA0230 2-oxoisovalerate dehydrogenase, E1 component beta subunit; PFAM: Transketolase central region; Transketolase domain protein; SPTR: C1XX73 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain YP_003684548.1 COGs: COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type alpha subunit; InterPro IPR001017; KEGG: tth:TTC1757 2-oxoisovalerate dehydrogenase alpha subunit; PFAM: dehydrogenase E1 component; PRIAM: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring); SPTR: C1XX72 Branched-chain alpha-keto acid dehydrogenase E1 component; PFAM: Dehydrogenase E1 component YP_003684549.1 COGs: COG1576 conserved hypothetical protein; InterPro IPR003742; KEGG: amu:Amuc_1236 protein of unknown function DUF163; PFAM: protein of unknown function DUF163; SPTR: C1XX71 Uncharacterized conserved protein; PFAM: Predicted SPOUT methyltransferase; TIGRFAM: conserved hypothetical protein TIGR00246 YP_003684550.1 COGs: COG2514 ring-cleavage extradiol dioxygenase; InterPro IPR004360; KEGG: ttj:TTHA0801 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: C1XX70 Predicted ring-cleavage extradiol dioxygenase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_003684551.1 COGs: COG2223 Nitrate/nitrite transporter; InterPro IPR011701:IPR016196; KEGG: ttj:TTHA0203 hypothetical protein; PFAM: major facilitator superfamily MFS_1; SPTR: C1XX69 Nitrate/nitrite transporter; PFAM: Major Facilitator Superfamily YP_003684552.1 KEGG: smt:Smal_0674 hypothetical protein; SPTR: C1XX68 Putative uncharacterized protein YP_003684553.1 KEGG: chl:Chy400_0319 hypothetical protein; SPTR: C1XX67 Putative uncharacterized protein YP_003684554.1 KEGG: sin:YN1551_0121 hypothetical protein; SPTR: C1XX65 Putative uncharacterized protein; PFAM: Alkylmercury lyase YP_003684555.1 COGs: COG5421 Transposase; InterPro IPR012337:IPR002559; KEGG: dsy:DSY0689 hypothetical protein; PFAM: transposase IS4 family protein; SPTR: C1XVD6 Transposase; PFAM: Transposase DDE domain YP_003684556.1 InterPro IPR009078:IPR007029; KEGG: kcr:Kcr_0513 heavy metal translocating P-type ATPase; PFAM: YHS domain protein; SPTR: C1XX62 Uncharacterized conserved protein; PFAM: YHS domain YP_003684557.1 KEGG: app:CAP2UW1_4228 glutaredoxin; SPTR: C1XX61 Putative uncharacterized protein YP_003684558.1 COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterProIPR012999:IPR013027:IPR004099:IPR011796:IPR 000815:IPR001327:IPR016156; KEGG: ttj:TTHA1153 mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SPTR: C1XX60 Mercuric reductase; TIGRFAM: mercuric reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: mercuric reductase YP_003684559.1 InterPro IPR006121; KEGG: dda:Dd703_1031 copper-translocating P-type ATPase; SPTR: C1XX59 Putative uncharacterized protein YP_003684560.1 COGs: COG0789 transcriptional regulator protein; InterPro IPR000551:IPR015358:IPR009061; KEGG: ttj:TTHA1155 mercuric resistance operon regulatory protein (MerR); PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; SPTR: C1XX58 Predicted transcriptional regulator; PFAM: MerR family regulatory protein; MerR, DNA binding YP_003684561.1 InterPro IPR000620; KEGG: ttj:TTHA0205 hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: C1XX57 Integral membrane protein DUF6; PFAM: EamA-like transporter family YP_003684562.1 InterPro IPR012337:IPR009057:IPR001584; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XPF2 Integrase family protein; PFAM: Integrase core domain YP_003684563.1 COGs: COG3288 NAD/NADP transhydrogenase alpha subunit; InterProIPR016040:IPR008142:IPR008143:IPR007886:IPR 007698; KEGG: ttj:TTHA0206 nicotinamide nucleotide transhydrogenase, alpha subunit 1; PFAM: alanine dehydrogenase/PNT domain protein; SPTR: C1XX55 NAD/NADP transhydrogenase alpha subunit; PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: NAD(P) transhydrogenase, alpha subunit YP_003684564.1 COGs: COG3288 NAD/NADP transhydrogenase alpha subunit; KEGG: ttj:TTHA0207 nicotinamide nucleotide transhydrogenase, alpha subunit 2; SPTR: C1XX54 Putative uncharacterized protein YP_003684565.1 COGs: COG1282 NAD/NADP transhydrogenase beta subunit; InterPro IPR012136:IPR004003; KEGG: ttj:TTHA0208 nicotinamide nucleotide transhydrogenase, beta subunit; PFAM: NAD(P) transhydrogenase beta subunit; PRIAM: NAD(P)(+) transhydrogenase (AB-specific); SPTR: C1XX53 NAD/NADP transhydrogenase beta subunit; PFAM: NAD(P) transhydrogenase beta subunit YP_003684566.1 InterPro IPR012337:IPR009057:IPR001584; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XYQ2 Integrase family protein; PFAM: Integrase core domain YP_003684567.1 COGs: COG2317 Zn-dependent carboxypeptidase; InterPro IPR001333; KEGG: ttj:TTHA0270 carboxypeptidase; PFAM: peptidase M32 carboxypeptidase Taq metallopeptidase; PRIAM: Carboxypeptidase Taq; SPTR: C1XYQ1 Carboxypeptidase Taq; PFAM: Carboxypeptidase Taq (M32) metallopeptidase YP_003684568.1 COGs: COG0793 Periplasmic protease; InterPro IPR005151:IPR001478; KEGG: dra:DR_1308 protease, putative; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; peptidase S41; SPTR: C1XYQ0 Periplasmic protease; PFAM: Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc) YP_003684569.1 InterPro IPR004518:IPR012359; KEGG: dge:Dgeo_1830 MazG nucleotide pyrophosphohydrolase; PFAM: MazG nucleotide pyrophosphohydrolase; SPTR: C1XYP9 Predicted pyrophosphatase; PFAM: MazG nucleotide pyrophosphohydrolase domain YP_003684570.1 COGs: COG1803 Methylglyoxal synthase; InterPro IPR011607:IPR004363:IPR018148; KEGG: ttj:TTHA1794 methylglyoxal synthase; PFAM: MGS domain protein; PRIAM: Methylglyoxal synthase; SMART: MGS domain protein; SPTR: C1XYP8 Methylglyoxal synthase; TIGRFAM: methylglyoxal synthase; PFAM: MGS-like domain; TIGRFAM: methylglyoxal synthase YP_003684571.1 KEGG: dge:Dgeo_0322 hypothetical protein; SPTR: C1XYP7 Putative uncharacterized protein YP_003684572.1 InterPro IPR001258:IPR011042; KEGG: gau:GAU_0392 hypothetical protein; PFAM: NHL repeat containing protein; SPTR: C1XYP6 Gluconolactonase YP_003684573.1 COGs: COG1193 Mismatch repair ATPase (MutS family); InterPro IPR005747:IPR002625:IPR000432:IPR007696; KEGG: tth:TTC1282 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; SMART: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; MutS III domain protein; SPTR: C1XYP5 MutS2 family protein; TIGRFAM: MutS2 family protein; PFAM: MutS domain V; Smr domain; TIGRFAM: MutS2 family protein YP_003684574.1 COGs: COG0366 Glycosidase; InterPro IPR013781:IPR017853:IPR006047:IPR006589; KEGG: tth:TTC1283 maltodextrin glucosidase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: C1XYP4 Glycosidase; PFAM: Alpha amylase, catalytic domain YP_003684575.1 COGs: COG3833 ABC-type maltose transport systems permease component; InterPro IPR000515; KEGG: ttj:TTHA1650 maltose ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XYP3 Carbohydrate ABC transporter membrane protein 2, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component YP_003684576.1 COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: tth:TTC1287 maltose transport system permease protein MalF; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XYP2 Carbohydrate ABC transporter membrane protein 1, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component YP_003684577.1 COGs: COG2182 Maltose-binding periplasmic protein/domains; InterPro IPR006060:IPR006059; KEGG: tth:TTC1288 maltose/maltodextrin-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: C1XYP1 Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: Bacterial extracellular solute-binding protein YP_003684578.1 COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198:IPR016040:IPR002347; KEGG: tth:TTC0410 short chain dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: C1XYP0 Short-chain alcohol dehydrogenase; PFAM: short chain dehydrogenase YP_003684579.1 KEGG: dge:Dgeo_2281 hypothetical protein; SPTR: C1XYN9 Putative uncharacterized protein YP_003684580.1 InterPro IPR012337:IPR002559; KEGG: cau:Caur_2446 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: C1XPT2 Transposase family protein; PFAM: Transposase DDE domain YP_003684581.1 InterPro IPR001424; KEGG: hypothetical protein; SPTR: C1XYN6 Putative uncharacterized protein YP_003684582.1 COGs: COG0127 Xanthosine triphosphate pyrophosphatase; InterPro IPR002637; KEGG: ttj:TTHA1654 nucleoside-triphosphatase (HAM1 protein); PFAM: Ham1 family protein; PRIAM: Nucleoside-triphosphatase; SPTR: C1XYN5 Nucleoside-triphosphatase; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family YP_003684583.1 COGs: COG0689 RNase PH; InterProIPR015847:IPR001247:IPR002381:IPR020568:IPR 018336; KEGG: ddr:Deide_22100 putative tRNA nucleotidyltransferase (phosphate-dependent exonuclease, ribonuclease PH, RNase PH); PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; PRIAM: tRNA nucleotidyltransferase; SPTR: C1XYN4 Ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: ribonuclease PH YP_003684584.1 InterPro IPR012337:IPR009057:IPR001584; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XYN3 Integrase family protein; PFAM: Integrase core domain YP_003684585.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR013762:IPR002104:IPR011010; KEGG: ttr:Tter_0923 integrase family protein; PFAM: integrase family protein; SPTR: C1XYN2 Site-specific recombinase XerD; PFAM: Phage integrase family YP_003684586.1 COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR001959:IPR010095; KEGG: dge:Dgeo_2272 putative transposase, IS891/IS1136/IS1341; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; SPTR: C1XTD3 Transposase, IS605 OrfB family, central region; TIGRFAM: transposase, IS605 OrfB family; PFAM: Helix-turn-helix domain; Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region YP_003684587.1 COGs: COG1943 Transposase and inactivated derivatives; InterPro IPR002686; KEGG: dge:Dgeo_2273 transposase IS200-like protein; PFAM: transposase IS200-family protein; SPTR: C1XYM9 Transposase; PFAM: Transposase IS200 like YP_003684589.1 COGs: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidase); InterPro IPR015927:IPR019756:IPR019759:IPR011056; KEGG: ddr:Deide_01180 putative LexA repressor; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: C1XYM8 SOS response transcriptional repressor, RecA-mediated autopeptidase; PFAM: Peptidase S24-like YP_003684590.1 InterPro IPR010982:IPR001387; KEGG: ate:Athe_2434 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: B9MNH1 Transcriptional regulator, XRE family; PFAM: Helix-turn-helix YP_003684591.1 InterPro IPR010093; KEGG: ddr:Deide_06470 hypothetical protein; SPTR: C1XYM7 DNA-binding protein, excisionase family; TIGRFAM: DNA binding domain protein, excisionase family; TIGRFAM: DNA binding domain, excisionase family YP_003684592.1 KEGG: GL23842 gene product from transcript GL23842-RA; SPTR: C1XYM6 Putative uncharacterized protein YP_003684593.1 KEGG: reu:Reut_A1896 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; SPTR: C1XYM5 Putative uncharacterized protein YP_003684594.1 SPTR: C1XYM4 Putative uncharacterized protein YP_003684595.1 KEGG: mlb:MLBr_02530 putative DNA-binding protein; SPTR: C1XYM3 Putative uncharacterized protein YP_003684596.1 KEGG: lbf:LBF_1178 hypothetical protein; SPTR: C1XYM2 Putative uncharacterized protein YP_003684597.1 COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; InterPro IPR003583:IPR010994; KEGG: dge:Dgeo_0826 helicase RecD/TraA; SMART: Helix-hairpin-helix DNA-binding class 1; SPTR: C1XYM1 ATP-dependent exoDNAse (Exonuclease V), alpha subunit/helicase superfamily I member; PFAM: Viral (Superfamily 1) RNA helicase YP_003684598.1 InterPro IPR014883; KEGG: xfn:XfasM23_1827 VRR-NUC domain-containing protein; PFAM: VRR-NUC domain protein; SPTR: C1XYM0 VRR-NUC domain-containing protein; PFAM: VRR-NUC domain YP_003684599.1 COGs: COG5519 Superfamily II helicase and inactivated derivatives; InterPro IPR009270; KEGG: sus:Acid_5998 hypothetical protein; PFAM: protein of unknown function DUF927; SPTR: C1XYL9 DNA/RNA helicase, superfamily II; PFAM: Domain of unknown function (DUF927) YP_003684600.1 KEGG: pme:NATL1_19471 ATP-dependent protease La; SPTR: C1XYL8 Putative uncharacterized protein YP_003684601.1 KEGG: atc:AGR_pTi_136 ribose ABC transporter (permease); SPTR: C1XYL7 Putative uncharacterized protein YP_003684602.1 KEGG: gox:GOX1210 hypothetical protein; SPTR: C1XYL6 Putative uncharacterized protein YP_003684603.1 KEGG: ypp:YPDSF_4052 hypothetical protein; SPTR: C1XYL5 Putative uncharacterized protein; PFAM: Terminase-like family; TIGRFAM: phage terminase, large subunit, PBSX family YP_003684604.1 COGs: COG4695 Phage-related protein; InterPro IPR008567:IPR006944; KEGG: gtn:GTNG_2828 putative portal protein; PFAM: portal protein; protein of unknown function DUF849; SPTR: C1XYL4 Phage-related protein; PFAM: Phage portal protein YP_003684605.1 KEGG: mno:Mnod_7009 putative head morphogenesis protein SPP1 gp7; SPTR: C1XYL3 Putative uncharacterized protein YP_003684606.1 COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR001959:IPR010095; KEGG: rmr:Rmar_2881 transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; putative transposase IS891/IS1136/IS1341 family; SPTR: C1XYL2 Transposase, IS605 OrfB family, central region; TIGRFAM: transposase, IS605 OrfB family; PFAM: Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region; transposase, putative, N-terminal domain YP_003684607.1 KEGG: pmf:P9303_16731 aromatic-ring hydroxylase (flavoprotein monooxygenase); SPTR: C1XYL1 Putative uncharacterized protein YP_003684608.1 KEGG: tmz:Tmz1t_3805 transposase IS4 family protein; SPTR: C1XRV2 Putative uncharacterized protein; PFAM: Transposase DDE domain YP_003684609.1 KEGG: membrane associated protein; SPTR: C1XYK8 Putative uncharacterized protein; PFAM: Phage capsid family YP_003684610.1 KEGG: nfa:nfa52590 putative transcriptional regulator; SPTR: C1XYK7 Putative uncharacterized protein YP_003684611.1 KEGG: CG8552 gene product from transcript CG8552-RA; SPTR: C1XYK6 Putative uncharacterized protein YP_003684612.1 KEGG: pfs:PFLU0196 putative AraC-family regulatory protein; SPTR: C1XYK5 Putative uncharacterized protein YP_003684613.1 KEGG: hypothetical protein; SPTR: C1XYK4 Putative uncharacterized protein YP_003684614.1 KEGG: GL15307 gene product from transcript GL15307-RA; SPTR: C1XYK3 Putative uncharacterized protein YP_003684615.1 KEGG: mac:MA3808 hypothetical protein; SPTR: C1XYK2 Putative uncharacterized protein YP_003684616.1 KEGG: scl:sce7643 hypothetical protein; SPTR: C1XYK1 Putative uncharacterized protein YP_003684617.1 SPTR: C1XYK0 Putative uncharacterized protein YP_003684618.1 InterPro IPR010090; KEGG: bwe:BcerKBAB4_5330 TP901 family phage tail tape measure protein; PFAM: tail tape measure protein TP901 core region; SPTR: C1XYJ9 Phage tail tape measure protein, TP901 family; TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: Phage-related minor tail protein; TIGRFAM: phage tail tape measure protein, TP901 family, core region YP_003684619.1 KEGG: hma:pNG6164 hypothetical protein; SPTR: C1XYJ8 Putative uncharacterized protein YP_003684620.1 KEGG: ote:Oter_0082 beta strand repeat-containing protein; SPTR: C1XYJ7 Putative uncharacterized protein YP_003684621.1 InterPro IPR017441; KEGG: rpf:Rpic12D_2649 procollagen-proline dioxygenase; SPTR: C1XYJ5 Putative uncharacterized protein YP_003684622.1 KEGG: protein kinase; SPTR: C1XYJ4 Putative uncharacterized protein YP_003684623.1 COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: chy:CHY_2485 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SPTR: C1XYJ3 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase YP_003684624.1 KEGG: afr:AFE_0679 hypothetical protein; SPTR: C1XYJ2 Putative uncharacterized protein YP_003684625.1 KEGG: similar to laccase 1; SPTR: C1XYJ1 Putative uncharacterized protein YP_003684626.1 KEGG: mtc:MT2144 hypothetical protein; SPTR: C1XYJ0 Putative uncharacterized protein YP_003684627.1 KEGG: gka:GK0542 hypothetical protein; SPTR: C1XYI9 Putative uncharacterized protein YP_003684628.1 KEGG: mca:MCA2930 prophage MuMc02, head decoration protein, putative; SPTR: C1XYI8 Putative uncharacterized protein YP_003684629.1 KEGG: gur:Gura_0797 hypothetical protein; SPTR: C1XYI7 Putative uncharacterized protein YP_003684630.1 KEGG: cps:CPS_3463 proline/sodium symporter; SPTR: C1XYI6 Putative uncharacterized protein YP_003684631.1 KEGG: rpf:Rpic12D_1556 hypothetical protein; SPTR: C1XYI5 Putative uncharacterized protein YP_003684632.1 InterPro IPR012337:IPR002559; KEGG: cau:Caur_2446 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: C1XPT2 Transposase family protein; PFAM: Transposase DDE domain YP_003684633.1 COGs: COG1203 helicase; InterPro IPR001650:IPR014021:IPR006474:IPR014001; KEGG: dge:Dgeo_2629 CRISPR-associated helicase Cas3 family protein protein; PFAM: helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: C1XFZ7 CRISPR-associated helicase Cas3; TIGRFAM: CRISPR-associated helicase Cas3; PFAM: HD domain; Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: CRISPR-associated helicase Cas3 YP_003684634.1 KEGG: hypothetical protein ; K02355 elongation factor EF-G; SPTR: C1XYI0 Putative uncharacterized protein YP_003684635.1 InterPro IPR013381; KEGG: ttj:TTHB188 hypothetical protein; PFAM: CRISPR-associated protein Cse1; SPTR: C1XYH9 CRISPR-associated protein, Cse1 family; TIGRFAM: CRISPR-associated protein, Cse1 family; PFAM: CRISPR-associated protein Cse1 (CRISPR_cse1); TIGRFAM: CRISPR-associated protein, Cse1 family YP_003684636.1 InterPro IPR013382; KEGG: ppd:Ppro_2341 CRISPR-associated CSE2 family protein; PFAM: CRISPR-associated protein Cse2; SPTR: C1XYH7 CRISPR-associated protein, Cse2 family; TIGRFAM: CRISPR-associated protein, Cse2 family; PFAM: CRISPR-associated protein Cse2 (CRISPR_cse2); TIGRFAM: CRISPR-associated protein, Cse2 family YP_003684637.1 KEGG: ttj:TTHA0268 hypothetical protein; SPTR: C1XYH6 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2939) YP_003684638.1 InterPro IPR018506:IPR010148; KEGG: avn:Avin_17200 CRISPR-associated protein, CT1975; PFAM: CRISPR-associated protein CT1975; SPTR: C1XG01 CRISPR-associated protein, Cse4 family; TIGRFAM: CRISPR-associated protein, Cse4 family; PFAM: CT1975-like protein; TIGRFAM: CRISPR-associated protein, Cse4 family YP_003684639.1 InterPro IPR010147:IPR013422; KEGG: ppd:Ppro_2339 CRISPR-associated Cas5 family protein; PFAM: CRISPR-associated protein CT1976; SPTR: C1XXW3 CRISPR-associated protein, Cas5e family; TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; PFAM: CRISPR-associated protein (Cas_Cas5); TIGRFAM: CRISPR-associated protein Cas5, N-terminal domain; CRISPR-associated protein Cas5, Ecoli subtype YP_003684640.1 InterPro IPR010179; KEGG: avn:Avin_17220 CRISPR-associated protein, CT1974; PFAM: CRISPR-associated protein CT1974; SPTR: C1XG03 CRISPR-associated protein, Cse3 family; TIGRFAM: CRISPR-associated protein, Cse3 family; PFAM: CRISPR associated protein; TIGRFAM: CRISPR-associated protein, Cse3 family YP_003684641.1 COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR002729:IPR019851; KEGG: ttj:TTHB193 hypothetical protein; PFAM: protein of unknown function DUF48; SPTR: C1XXW0 CRISPR-associated protein, Cas1 family; TIGRFAM: CRISPR-associated protein Cas1; PFAM: CRISPR associated protein Cas1; TIGRFAM: CRISPR-associated protein Cas1; CRISPR-associated protein Cas1, ECOLI subtype YP_003684642.1 InterPro IPR010152; KEGG: ttj:TTHB194 hypothetical protein; PFAM: CRISPR-associated protein Cas2; SPTR: C1XG05 CRISPR-associated protein, Cas2 family; TIGRFAM: CRISPR-associated protein Cas2; PFAM: CRISPR-associated protein (Cas_Cas2CT1978); TIGRFAM: CRISPR-associated protein Cas2, E. coli subfamily YP_003684643.1 InterPro IPR012337:IPR009057:IPR001584; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XPF2 Integrase family protein; PFAM: Integrase core domain YP_003684644.1 KEGG: tth:TTC1009 hypothetical protein; SPTR: C1XXV8 Putative uncharacterized protein YP_003684645.1 COGs: COG0135 Phosphoribosylanthranilate isomerase; InterPro IPR013785:IPR011060:IPR001240; KEGG: tth:TTC1929 N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); PRIAM: Phosphoribosylanthranilate isomerase; SPTR: C1XXV7 N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase YP_003684646.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: bay:RBAM_035220 YwdF; PFAM: glycosyl transferase family 2; SPTR: C1XXV6 Glycosyl transferase; PFAM: Glycosyl transferase family 2 YP_003684647.1 COGs: COG0855 Polyphosphate kinase; InterPro IPR003414; KEGG: tth:TTC0637 polyphosphate kinase; PFAM: Polyphosphate kinase; PRIAM: Polyphosphate kinase; SPTR: C1XXV5 Polyphosphate kinase; PFAM: Polyphosphate kinase YP_003684648.1 COGs: COG0248 Exopolyphosphatase; InterPro IPR003695; KEGG: tth:TTC0636 exopolyphosphatase; PFAM: Ppx/GppA phosphatase; SPTR: C1XXV4 Exopolyphosphatase; PFAM: HD domain; Ppx/GppA phosphatase family YP_003684649.1 COGs: COG2062 Phosphohistidine phosphatase SixA; InterPro IPR013078:IPR004449; KEGG: tth:TTC0635 hypothetical protein; PFAM: Phosphoglycerate mutase; SMART: Phosphoglycerate mutase; SPTR: C1XXV3 Phosphohistidine phosphatase SixA; TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase family; TIGRFAM: phosphohistidine phosphatase SixA YP_003684650.1 InterPro IPR007899; KEGG: sen:SACE_1012 CHAD domain-containing protein; PFAM: CHAD domain containing protein; SMART: CHAD domain containing protein; SPTR: C1XXV2 Uncharacterized conserved protein; PFAM: CHAD domain YP_003684651.1 InterPro IPR004360; KEGG: sth:STH1555 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: C1XXV1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_003684652.1 COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR018376:IPR001753; KEGG: tth:TTC0182 enoyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase; SPTR: C1XXV0 Enoyl-CoA hydratase/carnithine racemase; PFAM: Enoyl-CoA hydratase/isomerase family YP_003684653.1 COGs: COG3119 Arylsulfatase A; InterPro IPR017849:IPR017850:IPR000917:IPR012251; KEGG: rxy:Rxyl_3110 sulfatase; PFAM: sulfatase; SPTR: C1XXU9 Arylsulfatase A family protein; PFAM: Sulfatase YP_003684654.1 COGs: COG0290 Translation initiation factor 3 (IF-3); InterPro IPR019814:IPR019815:IPR001288; KEGG: ttj:TTHA0551 translation initiation factor IF-3; PFAM: Translation initiation factor 3-like; SPTR: C1XXU8 Bacterial translation initiation factor 3 (BIF-3); TIGRFAM: translation initiation factor IF-3; PFAM: Translation initiation factor IF-3, C-terminal domain; Translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3 YP_003684655.1 COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: sco:SCP1.259 putative transposon transposase; PFAM: transposase mutator type; SPTR: C1XP69 Transposase; PFAM: Transposase, Mutator family YP_003684656.1 InterPro IPR001706; KEGG: ttj:TTHA0552 50S ribosomal protein L35; PFAM: ribosomal protein L35; SPTR: P80341 50S ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35 YP_003684657.1 COGs: COG0292 Ribosomal protein L20; InterPro IPR005813; KEGG: ttj:TTHA0553 50S ribosomal protein L20; PFAM: ribosomal protein L20; SPTR: C1XXU5 50S ribosomal protein L20; TIGRFAM: ribosomal protein L20; PFAM: Ribosomal protein L20; TIGRFAM: ribosomal protein L20 YP_003684658.1 COGs: COG5322 dehydrogenase; InterPro IPR016040:IPR003811:IPR006151; KEGG: tth:TTC0187 hypothetical protein; PFAM: protein of unknown function DUF205; Shikimate/quinate 5-dehydrogenase; SPTR: C1XXU4 Predicted dehydrogenase; PFAM: Domain of unknown function (DUF205); Shikimate / quinate 5-dehydrogenase; TIGRFAM: conserved hypothetical integral membrane protein TIGR00023 YP_003684659.1 COGs: COG0775 Nucleoside phosphorylase; InterPro IPR019963:IPR000845; KEGG: ttj:TTHA0556 hypothetical protein; PFAM: purine or other phosphorylase family 1; SPTR: C1XXU3 Nucleoside phosphorylase; TIGRFAM: futalosine nucleosidase; PFAM: Phosphorylase superfamily; TIGRFAM: futalosine nucleosidase YP_003684660.1 KEGG: flagellar radial spoke protein; SPTR: C1XXU2 Putative uncharacterized protein YP_003684661.1 COGs: COG0427 Acetyl-CoA hydrolase; InterPro IPR003702; KEGG: ttj:TTHA1448 4-hydroxybutyrate CoA-transferase; PFAM: acetyl-CoA hydrolase/transferase; SPTR: C1XXU1 Acetyl-CoA hydrolase; PFAM: Acetyl-CoA hydrolase/transferase N-terminal domain YP_003684662.1 KEGG: similar to AGAP008983-PA; SPTR: C1XK25 Putative uncharacterized protein YP_003684663.1 COGs: COG2928 conserved hypothetical protein; InterPro IPR007462; KEGG: tth:TTC0995 transporter; PFAM: protein of unknown function DUF502; SPTR: C1XXT9 Uncharacterized conserved protein; PFAM: Protein of unknown function (DUF502) YP_003684664.1 COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: sco:SCP1.259 putative transposon transposase; PFAM: transposase mutator type; SPTR: C1XP69 Transposase; PFAM: Transposase, Mutator family YP_003684665.1 KEGG: hna:Hneap_1392 protease Do; SPTR: C1XXT7 Putative uncharacterized protein YP_003684666.1 COGs: COG2839 conserved hypothetical protein; InterPro IPR007403; KEGG: tth:TTC0014 hypothetical protein; PFAM: protein of unknown function DUF456; SPTR: C1XXT6 Uncharacterized conserved protein; PFAM: Protein of unknown function (DUF456) YP_003684667.1 InterPro IPR012336:IPR008554:IPR012335; KEGG: ttj:TTHA0383 putative thioredoxin; PFAM: glutaredoxin 2; SPTR: C1XXT5 Glutaredoxin-like domain (DUF836); PFAM: Glutaredoxin-like domain (DUF836) YP_003684668.1 COGs: COG0682 Prolipoprotein diacylglyceryltransferase; InterPro IPR001640; KEGG: tth:TTC0016 prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; SPTR: C1XXT4 Prolipoprotein diacylglyceryltransferase; PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase YP_003684669.1 COGs: COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); InterProIPR001451:IPR001228:IPR011004:IPR005882:IPR 018357; KEGG: ttj:TTHA0385 UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein; SPTR: C1XXT3 Glucosamine-1-phosphate N-acetyltransferase; UDP-N-acetylglucosamine pyrophosphorylase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: Nucleotidyl transferase; TIGRFAM: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase YP_003684670.1 COGs: COG1826 Sec-independent protein secretion pathway components; InterPro IPR006312:IPR003369; KEGG: ttj:TTHA0386 sec-independent protein translocase protein TatA; PFAM: sec-independent translocation protein mttA/Hcf106; SPTR: C1XXT2 Sec-independent protein translocase TatA; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family YP_003684671.1 COGs: COG0805 Sec-independent protein secretion pathway component TatC; InterPro IPR002033:IPR019822; KEGG: ttj:TTHA0387 sec-independent protein translocase protein TatC; PFAM: Sec-independent periplasmic protein translocase; SPTR: C1XXT1 Sec-independent protein translocase TatC; TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent protein translocase protein (TatC); TIGRFAM: Twin arginine targeting (Tat) protein translocase TatC YP_003684672.1 COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterProIPR010954:IPR020822:IPR006268:IPR006218:IPR 013785:IPR002701; KEGG: ttj:TTHA0388 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; PFAM: DAHP synthetase I/KDSA; Chorismate mutase, type II; SMART: Chorismate mutase; SPTR: C1XXT0 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase; chorismate mutase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; chorismate mutase; PFAM: Chorismate mutase type II; DAHP synthetase I family; TIGRFAM: chorismate mutase domain of gram positive AroA protein; phospho-2-dehydro-3-deoxyheptonate aldolase YP_003684673.1 COGs: COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); InterPro IPR010096:IPR001750; KEGG: tth:TTC1907 NADH-quinone oxidoreductase chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: C1XXS9 NADH dehydrogenase subunit N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N YP_003684674.1 COGs: COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); InterPro IPR010227:IPR003918:IPR001750; KEGG: tth:TTC1908 NADH-quinone oxidoreductase chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: C1XXS8 NADH dehydrogenase subunit M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M YP_003684675.1 COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterProIPR003945:IPR018393:IPR001516:IPR003916:IPR 001750; KEGG: tth:TTC1909 NADH-quinone oxidoreductase chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; PRIAM: NADH dehydrogenase (quinone); SPTR: C1XXS7 NADH dehydrogenase subunit L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5 C-terminus; NADH-Ubiquinone/plastoquinone (complex I), various chains; NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L YP_003684676.1 COGs: COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); InterPro IPR001133; KEGG: ttj:TTHA0094 NADH-quinone oxidoreductase chain 11; PFAM: NADH-ubiquinone oxidoreductase chain 4L; SPTR: C1XXS6 NADH dehydrogenase subunit K; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YP_003684677.1 COGs: COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J); InterPro IPR001457; KEGG: tth:TTC1911 NADH-quinone oxidoreductase chain J; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; SPTR: C1XXS5 NADH dehydrogenase subunit J; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_003684678.1 COGs: COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); InterProIPR017896:IPR001450:IPR017900:IPR010226:IPR 009051; KEGG: ttj:TTHA0092 NADH-quinone oxidoreductase chain 9; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C1XXS4 NADH dehydrogenase subunit I; TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S binding domain; TIGRFAM: NADH-quinone oxidoreductase, chain I YP_003684679.1 COGs: COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H); InterPro IPR018086:IPR001694; KEGG: ttj:TTHA0091 NADH-quinone oxidoreductase chain 8; PFAM: respiratory-chain NADH dehydrogenase subunit 1; PRIAM: NADH dehydrogenase (quinone); SPTR: C1XXS3 NADH dehydrogenase subunit H; PFAM: NADH dehydrogenase; TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) YP_003684680.1 COGs: COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); InterProIPR000283:IPR010228:IPR001041:IPR009010:IPR 019574:IPR006656; KEGG: ttj:TTHA0090 NADH-quinone oxidoreductase chain 3; PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; molybdopterin oxidoreductase; SPTR: C1XXS2 NADH-quinone oxidoreductase; TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; TIGRFAM: NADH-quinone oxidoreductase, chain G YP_003684681.1 COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit; InterProIPR001949:IPR011538:IPR019575:IPR011537:IPR 019554; KEGG: tth:TTC1915 NADH-quinone oxidoreductase chain F; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; Soluble ligand binding domain; PRIAM: NADH dehydrogenase (quinone); SPTR: C1XXS1 NADH dehydrogenase subunit F; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain; TIGRFAM: NADH-quinone oxidoreductase, F subunit YP_003684682.1 COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR012336:IPR002023:IPR012335; KEGG: ttj:TTHA0088 NADH-quinone oxidoreductase chain 2; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; SPTR: C1XXS0 NADH dehydrogenase subunit E; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit YP_003684683.1 COGs: COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7; InterPro IPR001135:IPR010219:IPR014029; KEGG: tth:TTC1917 NADH-quinone oxidoreductase chain D; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; PRIAM: NADH dehydrogenase (quinone); SPTR: C1XXR9 NADH dehydrogenase subunit D; TIGRFAM: NADH dehydrogenase I, D subunit; PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit; TIGRFAM: NADH dehydrogenase I, D subunit YP_003684684.1 COGs: COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; InterPro IPR001268:IPR020396:IPR010218; KEGG: ttj:TTHA0086 NADH-quinone oxidoreductase chain 5; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; SPTR: C1XXR8 NADH-quinone oxidoreductase; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C YP_003684685.1 COGs: COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase; InterPro IPR006138:IPR006137; KEGG: ttj:TTHA0085 NADH-quinone oxidoreductase chain 6; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; PRIAM: NADH dehydrogenase (quinone); SPTR: C1XXR7 NADH dehydrogenase subunit B; TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit YP_003684686.1 COGs: COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A); InterPro IPR000440; KEGG: ttj:TTHA0084 NADH-quinone oxidoreductase chain 7; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; SPTR: C1XXR6 NADH-quinone oxidoreductase subunit; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YP_003684687.1 COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR000873; KEGG: ttj:TTHA0511 phenylaceate-CoA ligase/coenzyme F390 synthetase; PFAM: AMP-dependent synthetase and ligase; SPTR: C1XXR5 Coenzyme F390 synthetase; PFAM: AMP-binding enzyme YP_003684688.1 InterPro IPR018392:IPR002482; KEGG: dge:Dgeo_1912 hypothetical protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: C1XXR4 LysM domain-containing protein; PFAM: LysM domain YP_003684689.1 KEGG: hypothetical protein; SPTR: C1XXR3 Putative uncharacterized protein YP_003684690.1 COGs: COG3809 conserved hypothetical protein; KEGG: pzu:PHZ_c1221 hypothetical protein; SPTR: C1XXR1 Uncharacterized conserved protein YP_003684691.1 COGs: COG0626 Cystathionine beta-lyase/cystathionine gamma-synthase; InterPro IPR000277:IPR015424:IPR015422:IPR015421; KEGG: tro:trd_A0675 methionine gamma-lyase (L-methioninase); PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; PRIAM: Cystathionine gamma-lyase; SPTR: C1XXR0 Cystathionine beta-lyase/cystathionine gamma-synthase; PFAM: Cys/Met metabolism PLP-dependent enzyme YP_003684692.1 COGs: COG2320 conserved hypothetical protein; InterPro IPR007344; KEGG: ddr:Deide_3p00052 hypothetical protein; PFAM: protein of unknown function UPF0157; SPTR: C1XXQ9 Uncharacterized conserved protein; PFAM: Uncharacterised protein family (UPF0157) YP_003684693.1 COGs: COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase); InterProIPR013816:IPR013817:IPR003135:IPR011054:IPR 016185:IPR006140:IPR005875:IPR011761; KEGG: tth:TTC0137 phosphoribosylaminoimidazole carboxylase ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; PRIAM: Phosphoribosylaminoimidazole carboxylase; SPTR: C1XXQ8 Phosphoribosylaminoimidazole carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-grasp domain; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurK protein YP_003684694.1 COGs: COG3329 permease; InterPro IPR010293; KEGG: ttj:TTHA0515 hypothetical protein; PFAM: protein of unknown function DUF897; SPTR: C1XXQ7 Predicted permease; PFAM: Domain of unknown function (DUF897) YP_003684695.1 InterPro IPR011322; KEGG: tth:TTC0140 hypothetical protein; SPTR: C1XXQ6 Putative uncharacterized protein YP_003684696.1 COGs: COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; InterPro IPR000031; KEGG: rca:Rcas_2524 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PRIAM: Phosphoribosylaminoimidazole carboxylase; SPTR: C1XXQ5 Phosphoribosylaminoimidazole carboxylase, PurE protein; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: AIR carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurE protein YP_003684697.1 COGs: COG0473 Isocitrate/isopropylmalate dehydrogenase; InterPro IPR014273:IPR019818:IPR001804; KEGG: gwc:GWCH70_0444 isocitrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; PRIAM: Isocitrate dehydrogenase (NADP(+)); SPTR: C1XXQ4 Isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase; isocitrate dehydrogenase, NADP-dependent, prokaryotic type YP_003684698.1 COGs: COG0861 Membrane protein TerC possibly involved in tellurium resistance; InterPro IPR005496; KEGG: tth:TTC0142 hypothetical protein; PFAM: Integral membrane protein TerC; SPTR: C1XXQ3 Membrane protein TerC, possibly involved in tellurium resistance; PFAM: Integral membrane protein TerC family YP_003684699.1 COGs: COG0861 Membrane protein TerC possibly involved in tellurium resistance; InterPro IPR005496; KEGG: ttj:TTHA1115 TerC family integral membrane protein; PFAM: Integral membrane protein TerC; SPTR: C1XXQ2 Membrane protein TerC, possibly involved in tellurium resistance; PFAM: Integral membrane protein TerC family YP_003684700.1 COGs: COG0861 Membrane protein TerC possibly involved in tellurium resistance; InterPro IPR005496; KEGG: ttj:TTHA1115 TerC family integral membrane protein; PFAM: Integral membrane protein TerC; SPTR: C1XXQ0 Membrane protein TerC, possibly involved in tellurium resistance; PFAM: Integral membrane protein TerC family YP_003684701.1 COGs: COG2382 Enterochelin esterase; InterPro IPR000801; KEGG: tth:TTC0749 ferric enterobactin esterase-related protein; PFAM: putative esterase; SPTR: C1XXP9 Enterochelin esterase-like enzyme; PFAM: Putative esterase YP_003684702.1 COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; InterProIPR020058:IPR020060:IPR018027:IPR003789:IPR 011035:IPR020061:IPR004514:IPR020059; KEGG: dge:Dgeo_2188 glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Asn/Gln amidotransferase; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; SMART: Asn/Gln amidotransferase; SPTR: C1XXP8 Glutamyl-tRNA synthetase; TIGRFAM: glutaminyl-tRNA synthetase; PFAM: tRNA synthetases class I (E and Q), catalytic domain; GatB domain; tRNA synthetases class I (E and Q), anti-codon binding domain; TIGRFAM: glutaminyl-tRNA synthetase YP_003684703.1 KEGG: sti:Sthe_0643 hypothetical protein; SPTR: C1XXP7 Putative uncharacterized protein YP_003684704.1 COGs: COG0296 1 4-alpha-glucan branching enzyme; InterProIPR017853:IPR006047:IPR006048:IPR006589:IPR 013781; KEGG: gvi:gll1431 alpha-glucanotransferase; PFAM: alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; SPTR: C1XXP6 1,4-alpha-glucan branching enzyme; PFAM: Alpha amylase, C-terminal all-beta domain; Alpha amylase, catalytic domain YP_003684705.1 COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: sco:SCP1.259 putative transposon transposase; PFAM: transposase mutator type; SPTR: C1XP69 Transposase; PFAM: Transposase, Mutator family YP_003684706.1 InterPro IPR017853:IPR013781; KEGG: psa:PST_2889 beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase; SPTR: C1XXP4 Putative uncharacterized protein YP_003684707.1 COGs: COG0562 UDP-galactopyranose mutase; InterPro IPR016040:IPR004379:IPR015899:IPR006076; KEGG: dge:Dgeo_2530 UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like; FAD dependent oxidoreductase; PRIAM: UDP-galactopyranose mutase; SPTR: C1XXP3 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase YP_003684708.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dge:Dgeo_2529 hypothetical protein; PFAM: glycosyl transferase group 1; SPTR: C1XXP2 Glycosyltransferase; PFAM: Glycosyl transferases group 1 YP_003684709.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterProIPR018490:IPR000595:IPR001808:IPR014710:IPR 011991:IPR012318; KEGG: dge:Dgeo_0106 Crp/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SPTR: C1XXP1 cAMP-binding protein; PFAM: Cyclic nucleotide-binding domain YP_003684710.1 COGs: COG1914 Mn2+ and Fe2+ transporter of the NRAMP family; InterPro IPR001046; KEGG: bxe:Bxe_C0554 Mn2+/Fe2+ transporter; PFAM: natural resistance-associated macrophage protein; SPTR: C1XXP0 Mn2+/Fe2_transporter, NRAMP family; PFAM: Natural resistance-associated macrophage protein; TIGRFAM: NRAMP (natural resistance-associated macrophage protein) metal ion transporters YP_003684711.1 KEGG: azo:azo3681 FAD-dependent oxidoreductase; SPTR: C1XXN9 Putative uncharacterized protein YP_003684712.1 COGs: COG5637 integral membrane protein; InterPro IPR005031; KEGG: rxy:Rxyl_1407 cyclase/dehydrase; PFAM: cyclase/dehydrase; SPTR: C1XXN8 Polyketide cyclase / dehydrase family protein; PFAM: Polyketide cyclase / dehydrase and lipid transport YP_003684713.1 COGs: COG1597 Sphingosine kinase; InterPro IPR005829:IPR001206; KEGG: ddr:Deide_04630 putative diacylglycerol kinase; PFAM: diacylglycerol kinase catalytic region; SPTR: C1XXN7 Sphingosine/diacylglycerol kinase-like enzyme; PFAM: Diacylglycerol kinase catalytic domain YP_003684714.1 COGs: COG0613 metal-dependent phosphoesterase (PHP family); InterPro IPR016195:IPR003141:IPR004013; KEGG: dra:DR_2235 hypothetical protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; SPTR: C1XXN6 Predicted metal-dependent phosphoesterase, PHP family; PFAM: PHP domain YP_003684715.1 KEGG: Tro; trophinin; SPTR: C1XXN5 Putative uncharacterized protein YP_003684716.1 COGs: COG4712 conserved hypothetical protein; InterPro IPR007232; KEGG: rmr:Rmar_2527 RAD52/22 double-strand break repair protein; PFAM: Rad52/22 double-strand break repair protein; SPTR: C1XXN4 Uncharacterized conserved protein; PFAM: Rad52/22 family double-strand break repair protein YP_003684717.1 COGs: COG0628 permease; InterPro IPR002549; KEGG: tth:TTC1674 permease; PFAM: protein of unknown function UPF0118; SPTR: C1XXN2 Predicted permease; PFAM: Domain of unknown function DUF20 YP_003684718.1 KEGG: AGAP002047-PA; SPTR: C1XXN1 Putative uncharacterized protein YP_003684719.1 InterPro IPR000788:IPR013509:IPR013344; KEGG: ddr:Deide_04660 putative ribonucleoside-diphosphate reductase; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein; SPTR: C1XXN0 Ribonucleoside-diphosphate reductase; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: Ribonucleotide reductase, all-alpha domain; Ribonucleotide reductase, barrel domain; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent YP_003684720.1 COGs: COG0366 Glycosidase; InterPro IPR006589:IPR006047:IPR013781:IPR017853; KEGG: ttj:TTHA1563 (neo)pullulanase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: C1XXM9 Glycosidase; PFAM: Alpha amylase, catalytic domain YP_003684721.1 COGs: COG0194 Guanylate kinase; InterPro IPR020590:IPR017665:IPR008144:IPR008145; KEGG: ttj:TTHA1562 guanylate kinase; PFAM: guanylate kinase; PRIAM: Guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; SPTR: C1XXM8 Guanylate kinase; TIGRFAM: guanylate kinase; PFAM: Guanylate kinase; TIGRFAM: guanylate kinase YP_003684722.1 InterPro IPR006110:IPR003716; KEGG: ttj:TTHA1561 DNA-directed RNA polymerase subunit omega; PFAM: RNA polymerase Rpb6; SPTR: C1XXM7 DNA-directed RNA polymerase, omega subunit; TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; TIGRFAM: DNA-directed RNA polymerase, omega subunit YP_003684723.1 COGs: COG1438 Arginine repressor; InterPro IPR001669:IPR011991; KEGG: dge:Dgeo_2316 arginine repressor, ArgR; PFAM: arginine repressor; SPTR: C1XXM6 Transcriptional regulator, ArgR family; TIGRFAM: arginine repressor; PFAM: Arginine repressor, C-terminal domain; Arginine repressor, DNA binding domain; TIGRFAM: arginine repressor YP_003684724.1 COGs: COG2095 Multiple antibiotic transporter; InterPro IPR002771; KEGG: tth:TTC1193 multiple antibiotic resistance protein MarC; PFAM: multiple antibiotic resistance (MarC)-related protein; SPTR: C1XXM4 Putative uncharacterized protein; PFAM: MarC family integral membrane protein; TIGRFAM: conserved hypothetical protein TIGR00427 YP_003684725.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160:IPR013656:IPR000014:IPR003018; KEGG: ttj:TTHA0989 GGDEF domain-containing protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; GAF domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein; GAF domain protein; SPTR: C1XXM3 Diguanylate cyclase (GGDEF) domain-containing protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; GAF domain; PAS fold; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_003684726.1 COGs: COG0497 ATPase involved in DNA repair; InterPro IPR004604:IPR003395:IPR003593; KEGG: ttj:TTHA1525 DNA repair protein RecN; PFAM: SMC domain protein; SMART: AAA ATPase; SPTR: C1XXM2 DNA replication and repair protein RecN; TIGRFAM: DNA repair protein RecN; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: DNA repair protein RecN YP_003684727.1 COGs: COG2897 Rhodanese-related sulfurtransferase; InterPro IPR001763:IPR001307; KEGG: dge:Dgeo_0159 3-mercaptopyruvate sulfurtransferase; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: C1XXM1 Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain YP_003684728.1 COGs: COG0736 Phosphopantetheinyl transferase (holo-ACP synthase); InterPro IPR004568:IPR008278:IPR002582; KEGG: ttj:TTHA1388 holo-[acyl carrier protein] synthase; PFAM: 4'-phosphopantetheinyl transferase; SPTR: C1XXM0 Phosphopantethiene--protein transferase; TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase superfamily; TIGRFAM: phosphopantethiene--protein transferase domain; holo-[acyl-carrier-protein] synthase YP_003684729.1 COGs: COG0144 tRNA and rRNA cytosine-C5-methylase; InterPro IPR011023:IPR001678; KEGG: ttj:TTHA1387 rRNA methylase; PFAM: Fmu (Sun) domain protein; SPTR: C1XXL9 NOL1/NOP2/sun family putative RNA methylase; TIGRFAM: RNA methylase, NOL1/NOP2/sun family; PFAM: NOL1/NOP2/sun family; TIGRFAM: NOL1/NOP2/sun family putative RNA methylase YP_003684730.1 COGs: COG0337 3-dehydroquinate synthetase; InterPro IPR002658:IPR016303; KEGG: tth:TTC1020 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; PRIAM: 3-dehydroquinate synthase; SPTR: C1XXL8 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase YP_003684731.1 COGs: COG0703 Shikimate kinase; InterPro IPR000623; KEGG: tth:TTC1019 shikimate kinase; PFAM: shikimate kinase; PRIAM: Shikimate kinase; SPTR: C1XXL7 Shikimate kinase; PFAM: Shikimate kinase YP_003684732.1 COGs: COG0082 Chorismate synthase; InterPro IPR000453:IPR020541; KEGG: tth:TTC1018 chorismate synthase; PFAM: chorismate synthase; PRIAM: Chorismate synthase; SPTR: C1XXL6 Chorismate synthase; TIGRFAM: chorismate synthase; PFAM: Chorismate synthase; TIGRFAM: chorismate synthase YP_003684733.1 COGs: COG1450 Type II secretory pathway component PulD; InterPro IPR005644:IPR004846:IPR004845; KEGG: tth:TTC1017 competence protein PilQ; PFAM: type II and III secretion system protein; NolW domain protein; SPTR: C1XXL5 Type II secretory pathway, component PulD; PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein YP_003684734.1 KEGG: ttj:TTHA1382 competence protein PilW; SPTR: C1XXL4 Putative uncharacterized protein YP_003684735.1 InterPro IPR019677; KEGG: ttj:TTHA1381 competence protein PilO; PFAM: General secretion pathway protein M; SPTR: C1XXL3 General secretion pathway protein M; PFAM: Pilus assembly protein, PilO YP_003684736.1 InterPro IPR007813; KEGG: ttj:TTHA1380 competence protein PilN; PFAM: Fimbrial assembly family protein; SPTR: C1XXL2 Fimbrial assembly protein (PilN); PFAM: Fimbrial assembly protein (PilN) YP_003684737.1 COGs: COG4972 Tfp pilus assembly protein ATPase PilM; InterPro IPR005883; KEGG: tth:TTC1013 pilus-associated protein PilM; SPTR: C1XXL1 Type IV pilus assembly protein PilM; TIGRFAM: type IV pilus assembly protein PilM; PFAM: Competence protein A; Cell division protein FtsA; TIGRFAM: type IV pilus assembly protein PilM YP_003684738.1 COGs: COG0473 Isocitrate/isopropylmalate dehydrogenase; InterPro IPR019818:IPR001804; KEGG: ttj:TTHA1378 homoisocitrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; PRIAM: 3-isopropylmalate dehydrogenase; SPTR: C1XXL0 Homoisocitrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; isopropylmalate/isohomocitrate dehydrogenases YP_003684739.1 KEGG: ttj:TTHA1377 hypothetical protein; SPTR: C1XXK9 Putative uncharacterized protein YP_003684740.1 COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; InterPro IPR001484:IPR006674:IPR003607; KEGG: tth:TTC1010 integral membrane protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: C1XXK8 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; PFAM: HD domain YP_003684741.1 SPTR: C1XXK7 Putative uncharacterized protein YP_003684742.1 COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: chl:Chy400_4064 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: C1XXK6 Predicted glycosyltransferase; PFAM: Glycosyl transferase family 2 YP_003684744.1 KEGG: kra:Krad_1697 RNA polymerase, sigma-24 subunit, ECF subfamily; SPTR: A6W8P4 RNA polymerase, sigma-24 subunit, ECF subfamily YP_003684745.1 KEGG: blt:Balat_1445 hypothetical protein; SPTR: C1XXK5 Putative uncharacterized protein YP_003684746.1 KEGG: ote:Oter_2957 radical SAM domain-containing protein; SPTR: C1XXK4 Putative uncharacterized protein YP_003684747.1 InterPro IPR015330; KEGG: tth:TTC0656 hypothetical protein; PFAM: Bifunctional DNA primase/polymerase; SPTR: C1XXK3 Bifunctional DNA primase/polymerase famiily protein (Fragment); PFAM: Bifunctional DNA primase/polymerase, N-terminal YP_003684748.1 InterPro IPR012337:IPR002559; KEGG: cau:Caur_2446 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: C1XPT2 Transposase family protein; PFAM: Transposase DDE domain YP_003684749.1 KEGG: nwi:Nwi_1258 hypothetical protein; SPTR: C1XW55 Putative uncharacterized protein YP_003684750.1 COGs: COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains; InterProIPR012337:IPR002562:IPR001098:IPR019760:IPR 002298; KEGG: dhd:Dhaf_0971 DNA-directed DNA polymerase; PFAM: DNA-directed DNA polymerase; 3'-5' exonuclease; PRIAM: DNA-directed DNA polymerase; SMART: DNA-directed DNA polymerase; 3'-5' exonuclease; SPTR: C1XW54 DNA polymerase I; PFAM: 3'-5' exonuclease; DNA polymerase family A YP_003684751.1 KEGG: acl:ACL_0673 metal dependent phosphohydrolase; SPTR: C1XW53 Putative uncharacterized protein YP_003684752.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR013762:IPR002104:IPR011010; KEGG: mta:Moth_1796 phage integrase; PFAM: integrase family protein; SPTR: C1XW52 Site-specific recombinase XerD; PFAM: Phage integrase family YP_003684753.1 InterPro IPR012337:IPR009057:IPR001584; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XW51 Integrase family protein; PFAM: Integrase core domain YP_003684754.1 COGs: COG2074 2-phosphoglycerate kinase; InterPro IPR005144; KEGG: tth:TTC0121 2-phosphoglycerate kinase; PFAM: ATP-cone domain protein; SPTR: C1XW50 2-phosphoglycerate kinase; PFAM: ATP cone domain YP_003684755.1 COGs: COG0793 Periplasmic protease; InterPro IPR005151; KEGG: chl:Chy400_1950 peptidase S41; PFAM: peptidase S41; SMART: peptidase S41; SPTR: C1XW49 Periplasmic protease; PFAM: Peptidase family S41 YP_003684756.1 KEGG: ttj:TTHA0494 hypothetical protein; SPTR: C1XW48 Putative uncharacterized protein YP_003684757.1 COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: mbn:Mboo_0684 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: C1XW47 Predicted amidohydrolase; PFAM: Carbon-nitrogen hydrolase YP_003684758.1 KEGG: ttj:TTHA0493 hypothetical protein; SPTR: C1XW46 Putative uncharacterized protein YP_003684759.1 KEGG: ttj:TTHA0492 hypothetical protein; SPTR: C1XW45 Putative uncharacterized protein YP_003684760.1 InterProIPR015927:IPR000223:IPR019757:IPR019759:IPR 011056; KEGG: dra:DR_1427 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: C1XW44 Signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S26; TIGRFAM: signal peptidase I, bacterial type YP_003684761.1 COGs: COG0498 Threonine synthase; InterPro IPR001926:IPR000634:IPR004450; KEGG: rmr:Rmar_1263 threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; PRIAM: Threonine synthase; SPTR: C1XW42 Threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine synthase YP_003684762.1 COGs: COG0460 Homoserine dehydrogenase; InterProIPR018488:IPR019811:IPR016040:IPR005106:IPR 001342; KEGG: ttj:TTHA0489 homoserine dehydrogenase; PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; PRIAM: Homoserine dehydrogenase; SPTR: C1XW41 Homoserine dehydrogenase; PFAM: Homoserine dehydrogenase; Homoserine dehydrogenase, NAD binding domain YP_003684763.1 COGs: COG1600 Uncharacterized Fe-S protein; InterProIPR017900:IPR009051:IPR016024:IPR013542:IPR 001450:IPR000357:IPR017896; KEGG: tth:TTC0112 iron-sulfur cluster-binding protein; PFAM: domain of unknown function DUF1730; 4Fe-4S ferredoxin iron-sulfur binding domain protein; HEAT domain containing protein; SPTR: C1XW40 Uncharacterized Fe-S protein; PFAM: Domain of unknown function (DUF1730); TIGRFAM: iron-sulfur cluster binding protein, putative YP_003684764.1 InterPro IPR011152:IPR004843; KEGG: ttj:TTHA0485 phosphoesterase-related protein; PFAM: metallophosphoesterase; SPTR: C1XW39 Predicted phosphoesterase; PFAM: Calcineurin-like phosphoesterase YP_003684765.1 COGs: COG0815 Apolipoprotein N-acyltransferase; InterPro IPR004563:IPR003010; KEGG: ttj:TTHA0484 apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: C1XW38 Apolipoprotein N-acyltransferase; TIGRFAM: apolipoprotein N-acyltransferase; PFAM: tRNA Pseudouridine synthase II, C terminal; Carbon-nitrogen hydrolase; TIGRFAM: apolipoprotein N-acyltransferase YP_003684766.1 InterPro IPR004692; KEGG: ttj:TTHA1784 preprotein translocase subunit SecG; PFAM: Preprotein translocase SecG subunit; SPTR: C1XW36 Protein translocase, SecG subunit; TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit YP_003684767.1 InterPro IPR012337:IPR009057:IPR001584; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XW35 Integrase family protein; PFAM: Integrase core domain YP_003684768.1 COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: ttj:TTHA0469 peptide ABC transporter, periplasmic peptide-binding protein; PFAM: extracellular solute-binding protein family 5; SPTR: C1XLY1 ABC-type dipeptide transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_003684769.1 COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: ttj:TTHA0470 peptide ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XW32 ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_003684770.1 COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: ttj:TTHA0471 peptide ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XW31 ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_003684771.1 COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterProIPR010066:IPR003439:IPR017871:IPR003593:IPR 013563; KEGG: ttj:TTHA0472 peptide ABC transporter, ATP-binding protein; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; SPTR: C1XW30 Oligopeptide/dipeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain YP_003684772.1 COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterProIPR017871:IPR010066:IPR003439:IPR013563:IPR 003593; KEGG: ttj:TTHA0473 peptide ABC transporter, ATP-binding protein; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; SPTR: C1XW29 Oligopeptide/dipeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain YP_003684773.1 COGs: COG5316 conserved hypothetical protein; KEGG: ttj:TTHA0004 hypothetical protein; SPTR: C1XW28 Putative uncharacterized protein YP_003684774.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR001375:IPR011042; KEGG: ttj:TTHA1605 acylamino-acid-releasing protein; PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: C1XW27 Dipeptidyl aminopeptidase/acylaminoacyl peptidase; PFAM: Prolyl oligopeptidase family YP_003684775.1 InterPro IPR000620; KEGG: cag:Cagg_3740 protein of unknown function DUF6 transmembrane; PFAM: protein of unknown function DUF6 transmembrane; SPTR: C1XW26 Predicted permease, DMT superfamily; PFAM: EamA-like transporter family YP_003684776.1 KEGG: ttj:TTHA1604 hypothetical protein; SPTR: C1XW25 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3467) YP_003684777.1 COGs: COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid; InterPro IPR004942; KEGG: mbn:Mboo_1908 roadblock/LC7 family protein; PFAM: Roadblock/LC7 family protein; SPTR: C1XW24 Uncharacterized conserved protein; PFAM: Roadblock/LC7 domain YP_003684778.1 InterPro IPR004942; KEGG: ttj:TTHA1602 hypothetical protein; PFAM: Roadblock/LC7 family protein; SPTR: C1XW23 Roadblock/LC7 domain-containing protein; PFAM: Roadblock/LC7 domain YP_003684779.1 COGs: COG0353 Recombinational DNA repair protein (RecF pathway); InterProIPR003583:IPR000093:IPR015967:IPR006171:IPR 006154; KEGG: ttj:TTHA1600 recombination protein RecR; PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; SMART: Toprim sub domain protein; Helix-hairpin-helix DNA-binding class 1; SPTR: C1XW22 DNA replication and repair protein RecR; TIGRFAM: recombination protein RecR; PFAM: Toprim domain; RecR protein; TIGRFAM: recombination protein RecR YP_003684780.1 COGs: COG0718 conserved hypothetical protein; InterPro IPR004401; KEGG: ttj:TTHA1599 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: C1XW21 Putative uncharacterized protein; PFAM: Uncharacterised BCR, YbaB family COG0718; TIGRFAM: conserved hypothetical protein TIGR00103 YP_003684781.1 InterPro IPR011701:IPR016196; KEGG: ttj:TTHA1597 putative transporter; PFAM: major facilitator superfamily MFS_1; SPTR: C1XW20 Arabinose efflux permease family protein; PFAM: Bacterial protein of unknown function (DUF894) YP_003684782.1 KEGG: ttj:TTHA1596 hypothetical protein; SPTR: C1XW19 Putative uncharacterized protein YP_003684783.1 COGs: COG0631 Serine/threonine protein phosphatase; InterPro IPR001932:IPR014045; KEGG: ttj:TTHA1595 protein serine/threonine phosphatase; PFAM: Protein phosphatase 2C-like; PRIAM: Phosphoprotein phosphatase; SMART: protein phosphatase 2C domain protein; SPTR: C1XW18 Serine/threonine protein phosphatase; PFAM: Protein phosphatase 2C YP_003684784.1 COGs: COG0515 Serine/threonine protein kinase; InterProIPR008271:IPR011009:IPR011042:IPR017442:IPR 000719:IPR017441:IPR013017:IPR001258; KEGG: ttj:TTHA1594 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; NHL repeat containing protein; SPTR: C1XW17 Serine/threonine protein kinase; PFAM: Protein kinase domain YP_003684785.1 COGs: COG1225 Peroxiredoxin; InterPro IPR017936:IPR012336:IPR000866:IPR012335; KEGG: sul:SYO3AOP1_1047 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: C1XW16 Peroxiredoxin; PFAM: AhpC/TSA family YP_003684786.1 COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR006076; KEGG: ttj:TTHB092 phytoene dehydrogenase; PFAM: FAD dependent oxidoreductase; SPTR: C1XW15 Phytoene dehydrogenase-like oxidoreductase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: C-3',4' desaturase CrtD YP_003684787.1 COGs: COG0415 Deoxyribodipyrimidine photolyase; InterPro IPR006050:IPR005101:IPR002081:IPR014729; KEGG: tth:TT_P0058 deoxyribodipyrimidine photolyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; PRIAM: Deoxyribodipyrimidine photo-lyase; SPTR: C1XW14 Deoxyribodipyrimidine photo-lyase type I; PFAM: FAD binding domain of DNA photolyase; DNA photolyase YP_003684788.1 COGs: COG2335 Secreted and surface protein containing fasciclin-like repeats; InterPro IPR000782; KEGG: vsp:VS_II0883 conserved hypothetical protein-putative fasciclin domain; PFAM: beta-Ig-H3/fasciclin; SMART: beta-Ig-H3/fasciclin; SPTR: C1XW13 Secreted/surface protein with fasciclin-like repeats; PFAM: Fasciclin domain YP_003684789.1 InterPro IPR012337:IPR002559; KEGG: cau:Caur_2446 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: C1XPT2 Transposase family protein; PFAM: Transposase DDE domain YP_003684790.1 KEGG: ttj:TTHB089 hypothetical protein; SPTR: C1XW11 Putative uncharacterized protein; PFAM: Alginate O-acetyl transferase AlgF YP_003684791.1 InterPro IPR000073; KEGG: ttj:TTHB091 hypothetical protein; PFAM: alpha/beta hydrolase fold; SPTR: C1XW10 Lysophospholipase; PFAM: alpha/beta hydrolase fold YP_003684792.1 COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR017871:IPR003593:IPR015863:IPR003439; KEGG: tth:TT_P0177 transporter; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XW09 ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component; PFAM: ABC transporter YP_003684793.1 COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: ttj:TTHB219 hemin ABC transporter, permease protein; PFAM: transport system permease protein; SPTR: C1XW08 ABC-type Fe3+-siderophore transport system, permease component; PFAM: FecCD transport family YP_003684794.1 COGs: COG4558 ABC-type hemin transport system periplasmic component; InterPro IPR002491; KEGG: ttj:TTHB220 hemin ABC transporter, periplasmic hemin-binding protein; PFAM: periplasmic binding protein; SPTR: C1XW07 ABC-type hemin transport system, periplasmic component; PFAM: Periplasmic binding protein YP_003684795.1 InterPro IPR012337:IPR009057:IPR001584; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XW06 Integrase family protein; PFAM: Integrase core domain YP_003684796.1 InterPro IPR007372; KEGG: ttj:TTHB096 hypothetical protein; PFAM: YceI family protein; SMART: YceI family protein; SPTR: C1XW05 Uncharacterized conserved protein; PFAM: YceI-like domain YP_003684797.1 InterPro IPR001647:IPR009057:IPR012287; KEGG: bbr:BB4694 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: C1XW04 Transcriptional regulator, COG1309; PFAM: Bacterial regulatory proteins, tetR family YP_003684798.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR011006:IPR001789:IPR001867; KEGG: tth:TTC1229 two-component response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: C1XW03 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_003684799.1 COGs: COG0642 Signal transduction histidine kinase; InterProIPR009082:IPR003594:IPR003661:IPR005467:IPR 004358; KEGG: ttj:TTHA1592 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: C1XW02 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003684800.1 COGs: COG1999 Uncharacterized protein SCO1/SenC/PrrC involved in biogenesis of respiratory and photosynthetic systems; InterPro IPR017936:IPR012336:IPR003782:IPR012335; KEGG: oca:OCAR_4665 electron transport protein SCO1/SenC; PFAM: electron transport protein SCO1/SenC; SPTR: C1XW01 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems; PFAM: SCO1/SenC YP_003684801.1 InterPro IPR009056; KEGG: scl:sce7465 putative monooxygenase; SPTR: C1XW00 Putative uncharacterized protein; PFAM: Copper type II ascorbate-dependent monooxygenase, C-terminal domain; Copper type II ascorbate-dependent monooxygenase, N-terminal domain YP_003684802.1 KEGG: ttj:TTHA1590 hypothetical protein; SPTR: C1XVZ9 Putative uncharacterized protein YP_003684803.1 COGs: COG3857 ATP-dependent nuclease subunit B; KEGG: ttj:TTHA0999 hypothetical protein; SPTR: C1XVZ8 ATP-dependent exonuclease V beta subunit, helicase and exonuclease domain-containing YP_003684804.1 COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); InterPro IPR000212:IPR014016:IPR014017; KEGG: ttj:TTHA0998 ATP-dependent DNA helicase; PFAM: UvrD/REP helicase; SPTR: C1XVZ8 ATP-dependent exonuclease V beta subunit, helicase and exonuclease domain-containing; PFAM: UvrD/REP helicase YP_003684805.1 KEGG: hypothetical protein; SPTR: C1XVZ7 Putative uncharacterized protein YP_003684806.1 COGs: COG1765 redox protein regulator of disulfide bond formation; InterPro IPR003718:IPR015946; KEGG: tth:TTC1007 hypothetical protein; PFAM: OsmC family protein; SPTR: C1XVZ6 Predicted redox protein, regulator of disulfide bond formation; PFAM: OsmC-like protein YP_003684807.1 COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR015424:IPR000653:IPR015421:IPR015422; KEGG: gka:GK3168 pleiotropic regulatory protein; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: C1XVZ5 Predicted PLP-dependent enzyme possibly involved in cell wall biogenesis; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family YP_003684808.1 COGs: COG0795 permease; InterPro IPR005495; KEGG: ttj:TTHA1108 hypothetical protein; PFAM: permease YjgP/YjgQ family protein; SPTR: C1XVZ4 Predicted permease; PFAM: Predicted permease YjgP/YjgQ family YP_003684809.1 KEGG: tth:TTC0478 hypothetical protein; SPTR: C1XVZ3 Putative uncharacterized protein YP_003684810.1 KEGG: tth:TTC0743 hypothetical protein; SPTR: C1XVZ2 Putative uncharacterized protein YP_003684811.1 COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: ttj:TTHA1372 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; PRIAM: N-acetylmuramoyl-L-alanine amidase; SMART: cell wall hydrolase/autolysin; SPTR: C1XVZ1 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase YP_003684812.1 COGs: COG1092 SAM-dependent methyltransferase; InterPro IPR003402; KEGG: ttj:TTHA1493 hypothetical protein; PFAM: protein of unknown function Met10; SPTR: C1XVZ0 SAM-dependent methyltransferase; PFAM: Met-10+ like-protein YP_003684813.1 KEGG: ttj:TTHA1662 hypothetical protein; SPTR: C1XVY9 Putative uncharacterized protein YP_003684814.1 COGs: COG1523 Type II secretory pathway pullulanase PulA and related glycosidase; InterProIPR005323:IPR014756:IPR011839:IPR004193:IPR 006047:IPR013781:IPR017853; KEGG: ddr:Deide_15110 putative pullulanase precursor (alpha-dextrin endo-1,6-alpha-glucosidase)(pullulan 6-glucanohydrolase); PFAM: pullanase-associated protein; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SPTR: C1XVY8 Alpha-1,6-glucosidase, pullulanase-type; TIGRFAM: alpha-1,6-glucosidase, pullulanase-type; PFAM: Domain of unknown function (DUF3372); Alpha amylase, catalytic domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Bacterial pullanase-associated domain; TIGRFAM: alpha-1,6-glucosidases, pullulanase-type; pullulanase, type I YP_003684815.1 COGs: COG0366 Glycosidase; InterProIPR006589:IPR006048:IPR006047:IPR013781:IPR 017853; KEGG: tga:TGAM_1752 pullulan hydrolase type III (pulhA); PFAM: alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; SPTR: C1XVY7 Glycosidase; PFAM: Alpha amylase, C-terminal all-beta domain; Alpha amylase, catalytic domain YP_003684816.1 COGs: COG1296 branched-chain amino acid permease (azaleucine resistance); InterPro IPR011606; KEGG: hma:rrnAC1920 branched-chain amino acid transport protein AzlC; PFAM: AzlC family protein; SPTR: C1XVY6 Predicted branched-chain amino acid permease (Azaleucine resistance); PFAM: AzlC protein YP_003684817.1 COGs: COG4392 membrane protein; InterPro IPR008407; KEGG: hau:Haur_0093 branched-chain amino acid transport; PFAM: branched-chain amino acid transport; SPTR: C1XVY5 Predicted membrane protein, COG4392; PFAM: Branched-chain amino acid transport protein (AzlD) YP_003684818.1 COGs: COG1403 Restriction endonuclease; InterPro IPR003615:IPR002711; KEGG: ttj:TTHA1660 hypothetical protein; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: C1XVY4 Restriction endonuclease; PFAM: HNH endonuclease YP_003684819.1 KEGG: ddr:Deide_08890 hypothetical protein; SPTR: C1XVY3 Putative uncharacterized protein YP_003684820.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: ddr:Deide_08880 putative ABC transporter, ATP-binding component; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XVY2 ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter YP_003684821.1 COGs: COG0793 Periplasmic protease; InterPro IPR005151:IPR004447:IPR001478; KEGG: tth:TTC0929 tail-specific protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; PRIAM: C-terminal processing peptidase; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; SPTR: C1XVY1 C-terminal processing peptidase-2; TIGRFAM: carboxyl-terminal protease; PFAM: Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc) YP_003684822.1 COGs: COG2884 ATPase involved in cell division; InterPro IPR017871:IPR003593:IPR003439:IPR005286; KEGG: ttj:TTHA1295 cell-division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XVY0 Cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter; TIGRFAM: cell division ATP-binding protein FtsE YP_003684823.1 COGs: COG1544 Ribosome-associated protein Y (PSrp-1); InterPro IPR003489; KEGG: ttj:TTHA1294 ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; SPTR: C1XVX9 SSU ribosomal protein S30P; sigma 54 modulation protein; TIGRFAM: ribosomal subunit interface protein; PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein YP_003684824.1 COGs: COG4942 Membrane-bound metallopeptidase; InterPro IPR011055:IPR016047; KEGG: tth:TTC0705 hypothetical protein; PFAM: Peptidase M23; SPTR: C1XVX8 Membrane-bound metallopeptidase; PFAM: Peptidase family M23 YP_003684825.1 COGs: COG2177 Cell division protein; InterPro IPR003838; KEGG: tth:TTC0704 cell division protein FtsX; PFAM: protein of unknown function DUF214; SPTR: C1XVX7 Cell division protein FtsX; PFAM: Predicted permease YP_003684826.1 COGs: COG2379 Putative glycerate kinase; InterPro IPR007835; KEGG: dge:Dgeo_2615 hydroxypyruvate reductase; PFAM: MOFRL domain protein; PRIAM: Hydroxypyruvate reductase; SPTR: C1XVX6 Glycerate 2-kinase; PFAM: MOFRL family YP_003684827.1 InterProIPR011043:IPR014756:IPR015202:IPR015916:IPR 013783; KEGG: gvi:gll4251 putative galactose oxidase; PFAM: Domain of unknown function DUF1929; PRIAM: Galactose oxidase; SPTR: C1XVX5 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF1929); Glyoxal oxidase N-terminus YP_003684828.1 COGs: COG0247 Fe-S oxidoreductase; InterProIPR017896:IPR001450:IPR012285:IPR017900:IPR 004017:IPR012257:IPR009051; KEGG: dra:DR_1730 glycolate oxidase, iron-sulfur subunit; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C1XVX4 Fe-S oxidoreductase; PFAM: Cysteine-rich domain YP_003684829.1 COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR016166:IPR006094:IPR016168; KEGG: tth:TTC0128 (S)-2-hydroxy-acid oxidase subunit GlcE; PFAM: FAD linked oxidase domain protein; SPTR: C1XVX3 FAD/FMN-dependent dehydrogenase; PFAM: FAD binding domain YP_003684830.1 COGs: COG0277 FAD/FMN-containing dehydrogenase; InterProIPR016166:IPR016164:IPR016167:IPR006094:IPR 004113; KEGG: ttj:TTHA0505 glycolate oxidase subunit; PFAM: FAD linked oxidase domain protein; SPTR: C1XVX2 FAD/FMN-dependent dehydrogenase; PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain; TIGRFAM: glycolate oxidase, subunit GlcD YP_003684831.1 COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: ddr:Deide_14360 hypothetical protein; PFAM: protein of unknown function DUF58; SPTR: C1XVX1 Uncharacterized conserved protein; PFAM: Protein of unknown function DUF58 YP_003684832.1 COGs: COG0714 MoxR-like ATPase; InterPro IPR011703:IPR003593:IPR016366; KEGG: rrs:RoseRS_0692 ATPase; PFAM: ATPase associated with various cellular activities AAA_3; SMART: AAA ATPase; SPTR: C1XVX0 MoxR-like ATPase; PFAM: ATPase family associated with various cellular activities (AAA) YP_003684833.1 KEGG: dra:DR_0917 hypothetical protein; SPTR: C1XVW9 Putative uncharacterized protein YP_003684834.1 COGs: COG2225 Malate synthase; InterPro IPR019830:IPR011076:IPR006252; KEGG: rmr:Rmar_2163 malate synthase A; PFAM: Malate synthase family protein; PRIAM: Malate synthase; SPTR: C1XVW8 Malate synthase; TIGRFAM: malate synthase A; PFAM: Malate synthase; TIGRFAM: malate synthase A YP_003684835.1 COGs: COG1586 S-adenosylmethionine decarboxylase; InterPro IPR017716:IPR016067:IPR003826; KEGG: ttj:TTHA1457 S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase related; SPTR: C1XVW7 S-adenosylmethionine decarboxylase proenzyme; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme, Bacillus form YP_003684836.1 InterPro IPR014314:IPR000701; KEGG: ttj:TTHA1456 succinate dehydrogenase, cytochrome subunit; PFAM: succinate dehydrogenase cytochrome b subunit; SPTR: C1XVW6 Succinate dehydrogenase subunit C; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: Succinate dehydrogenase/Fumarate reductase transmembrane subunit; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit YP_003684837.1 KEGG: ttj:TTHA1455 succinate dehydrogenase, membrane subunit (SdhD); SPTR: C1XVW5 Succinate dehydrogenase subunit D; PFAM: Succinate dehydrogenase/Fumarate reductase transmembrane subunit YP_003684838.1 COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterProIPR003952:IPR004112:IPR013027:IPR003953:IPR 014006:IPR015939:IPR011281; KEGG: ttj:TTHA1454 succinate dehydrogenase flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; SPTR: C1XVW4 Succinate dehydrogenase subunit A; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; succinate dehydrogenase, flavoprotein subunit; PFAM: domain; FAD binding domain; TIGRFAM: succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup; succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup YP_003684839.1 COGs: COG0479 Succinate dehydrogenase/fumarate reductase Fe-S protein subunit; InterProIPR001041:IPR017896:IPR012675:IPR012285:IPR 009051:IPR017900:IPR004489; KEGG: tth:TTC1089 succinate dehydrogenase iron-sulfur subunit; PRIAM: Succinate dehydrogenase; SPTR: C1XVW3 Succinate dehydrogenase subunit B; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_003684840.1 COGs: COG1160 GTPase; InterPro IPR001401; KEGG: ttj:TTHA1522 GTP-binding protein; PFAM: Dynamin family protein; SPTR: C1XVW2 Predicted GTPase; PFAM: Dynamin family; TIGRFAM: small GTP-binding protein domain YP_003684841.1 KEGG: pau:PA14_66875 polyhydroxyalkanoate synthesis protein PhaF; SPTR: C1XVW1 Putative uncharacterized protein YP_003684842.1 COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR020845:IPR000873; KEGG: tth:TTC0919 acetyl-coenzyme A synthetase; PFAM: AMP-dependent synthetase and ligase; SPTR: C1XVW0 Acyl-CoA synthetase/AMP-acid ligase; PFAM: Domain of unknown function (DUF3448); AMP-binding enzyme; TIGRFAM: acetoacetyl-CoA synthase YP_003684843.1 COGs: COG0515 Serine/threonine protein kinase; InterPro IPR011009:IPR017442:IPR000719:IPR017441; KEGG: tth:TTC0918 protein kinase-like protein; PFAM: Serine/threonine-protein kinase-like domain; SPTR: C1XVV9 Protein kinase family protein; PFAM: Protein kinase domain YP_003684844.1 COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; InterPro IPR001279; KEGG: ttj:TTHA1283 hypothetical protein; SMART: beta-lactamase domain protein; SPTR: C1XVV8 Predicted Zn-dependent hydrolase of beta-lactamase fold; PFAM: Metallo-beta-lactamase superfamily YP_003684845.1 KEGG: dra:DR_2006 hypothetical protein; SPTR: C1XVV7 Putative uncharacterized protein YP_003684846.1 KEGG: ttj:TTHA1281 hypothetical protein; SPTR: C1XVV6 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3248) YP_003684847.1 COGs: COG1092 SAM-dependent methyltransferase; KEGG: tth:TTC0914 hypothetical protein; SPTR: C1XVV5 SAM-dependent methyltransferase; PFAM: S-adenosylmethionine-dependent methyltransferase YP_003684848.1 KEGG: ttj:TTHA1279 V-type ATP synthase, subunit (VapC-therm); SPTR: C1XVV4 Putative uncharacterized protein YP_003684849.1 COGs: COG1269 H+-ATPase subunit I; InterPro IPR000408:IPR002490; KEGG: tth:TTC0912 V-type sodium ATP synthase subunit I; PFAM: V-type ATPase 116 kDa subunit; SPTR: C1XVV3 Archaeal/vacuolar-type H+-ATPase subunit I; PFAM: V-type ATPase 116kDa subunit family YP_003684850.1 InterPro IPR002379; KEGG: ttj:TTHA1277 V-type ATP synthase, subunit K; PFAM: H+transporting two-sector ATPase C subunit; SPTR: C1XVV2 ATP synthase subunit C; PFAM: ATP synthase subunit C YP_003684851.1 COGs: COG1390 H+-ATPase subunit E; InterPro IPR002842; KEGG: tth:TTC0910 V-type ATP synthase subunit E; PFAM: H+transporting two-sector ATPase E subunit; SPTR: C1XVV1 Archaeal/vacuolar-type H+-ATPase subunit E; PFAM: ATP synthase (E/31 kDa) subunit YP_003684852.1 COGs: COG1527 H+-ATPase subunit C; InterPro IPR002843; KEGG: ttj:TTHA1275 V-type ATP synthase subunit; PFAM: H+transporting two-sector ATPase C (AC39) subunit; SPTR: C1XVV0 Archaeal/vacuolar-type H+-ATPase subunit C; PFAM: ATP synthase (C/AC39) subunit YP_003684853.1 COGs: COG1436 H+-ATPase subunit F; InterPro IPR000276:IPR008218; KEGG: dge:Dgeo_2048 vacuolar H+-transporting two-sector ATPase, F subunit; PFAM: Vacuolar H+transporting two-sector ATPase F subunit; SPTR: C1XVU9 Archaeal/vacuolar-type H+-ATPase subunit F; PFAM: ATP synthase (F/14-kDa) subunit YP_003684854.1 COGs: COG1155 H+-ATPase subunit A; InterProIPR020003:IPR000793:IPR018118:IPR004100:IPR 000194; KEGG: dge:Dgeo_2047 V-type ATP synthase subunit A; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; PRIAM: H(+)-transporting two-sector ATPase; SPTR: C1XVU8 Archaeal/vacuolar-type H+-ATPase subunit A; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain YP_003684855.1 COGs: COG1156 H+-ATPase subunit B; InterPro IPR004100:IPR000793:IPR000194:IPR020003; KEGG: ttj:TTHA1272 V-type ATP synthase subunit B; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; PRIAM: H(+)-transporting two-sector ATPase; SPTR: C1XVU7 Archaeal/vacuolar-type H+-ATPase subunit B; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain YP_003684856.1 COGs: COG1394 H+-ATPase subunit D; InterPro IPR002699; KEGG: ttj:TTHA1271 V-type ATP synthase subunit D; PFAM: H+transporting two-sector ATPase D subunit; SPTR: C1XVU6 H(+)-transporting ATP synthase, vacuolar type, subunit D; TIGRFAM: V-type ATPase, D subunit; PFAM: ATP synthase subunit D; TIGRFAM: H(+)-transporting ATP synthase, vacuolar type, subunit D YP_003684857.1 KEGG: tth:TTC0904 putative esterase; SPTR: C1XVU5 Putative uncharacterized protein; PFAM: Pectinacetylesterase YP_003684858.1 KEGG: ttj:TTHA1267 hypothetical protein; SPTR: C1XVU4 Putative uncharacterized protein YP_003684859.1 SPTR: C1XVU3 Putative uncharacterized protein YP_003684860.1 COGs: COG1200 RecG-like helicase; InterProIPR004609:IPR016027:IPR004365:IPR011545:IPR 001650:IPR014001:IPR014021; KEGG: ttj:TTHA1266 ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: C1XVU1 ATP-dependent DNA helicase RecG; TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: Helicase conserved C-terminal domain; OB-fold nucleic acid binding domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecG YP_003684861.1 KEGG: xcv:XCVd0116 hypothetical protein; SPTR: C1XVU0 Putative uncharacterized protein YP_003684862.1 COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR011249:IPR007863:IPR011237; KEGG: ttj:TTHA1265 zinc-dependent peptidase; PFAM: peptidase M16 domain protein; PRIAM: processing peptidase; SPTR: C1XVT9 Predicted Zn-dependent peptidase; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16) YP_003684863.1 COGs: COG0612 Zn-dependent peptidase; InterProIPR011249:IPR011765:IPR007863:IPR011237:IPR 001431; KEGG: tth:TTC0900 zinc protease; PFAM: peptidase M16 domain protein; SPTR: C1XVT8 Predicted Zn-dependent peptidase; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16) YP_003684864.1 COGs: COG2340 Uncharacterized protein with SCP/PR1 domains; InterPro IPR014044; KEGG: amr:AM1_1661 hypothetical protein; PFAM: SCP-like extracellular; SPTR: C1XVT7 SCP-like extracellular protein; PFAM: Cysteine-rich secretory protein family YP_003684865.1 InterPro IPR012337:IPR002559; KEGG: cau:Caur_2446 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: C1XPT2 Transposase family protein; PFAM: Transposase DDE domain YP_003684866.1 COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterProIPR016040:IPR008927:IPR006108:IPR006180:IPR 006176:IPR013328; KEGG: ttj:TTHA1262 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; PRIAM: 3-hydroxybutyryl-CoA dehydrogenase; SPTR: C1XVT3 3-hydroxyacyl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YP_003684867.1 KEGG: cyh:Cyan8802_4518 hypothetical protein; SPTR: C1XVT2 Putative uncharacterized protein YP_003684868.1 COGs: COG1640 4-alpha-glucanotransferase; InterPro IPR003385:IPR013781:IPR017853; KEGG: ttj:TTHA1261 4-alpha-glucanotransferase (amylomaltase) (disproportionating enzyme) (D-enzyme); PFAM: glycoside hydrolase family 77; PRIAM: 4-alpha-glucanotransferase; SPTR: C1XVT1 Amylomaltase or 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase YP_003684869.1 COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: sco:SCP1.259 putative transposon transposase; PFAM: transposase mutator type; SPTR: C1XP69 Transposase; PFAM: Transposase, Mutator family YP_003684870.1 COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR006091:IPR006089:IPR009100:IPR006090:IPR 009075:IPR013764; KEGG: aac:Aaci_2852 acyl-CoA dehydrogenase domain protein; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: C1XVS9 Acyl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain YP_003684871.1 COGs: COG0342 Preprotein translocase subunit SecD; InterPro IPR003335:IPR005791:IPR005665; KEGG: ttj:TTHA0697 bifunctional preprotein translocase subunit SecD/SecF; PFAM: SecD/SecF/SecDF export membrane protein; SPTR: C1XVS8 Protein translocase subunit secD; protein translocase subunit secF; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF YP_003684872.1 KEGG: cyh:Cyan8802_2977 domain of unknown function DUF1929; SPTR: C1XVS7 Putative uncharacterized protein YP_003684873.1 COGs: COG0532 Translation initiation factor 2 (IF-2; GTPase); InterProIPR000178:IPR006847:IPR005225:IPR009000:IPR 000795:IPR004161; KEGG: ttj:TTHA0699 translation initiation factor IF-2; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain protein; elongation factor Tu domain 2 protein; SPTR: C1XVS6 Translation initiation factor IF-2; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Translation-initiation factor 2; Translation initiation factor IF-2, N-terminal region; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation initiation factor IF-2 YP_003684874.1 COGs: COG2740 nucleic-acid-binding protein implicated in transcription termination; InterPro IPR007393; KEGG: ttj:TTHA0700 hypothetical protein; PFAM: protein of unknown function DUF448; SPTR: B7AA90 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF448) YP_003684875.1 COGs: COG0195 Transcription elongation factor; InterProIPR010213:IPR013735:IPR009019:IPR016027:IPR 003029:IPR004087:IPR012340:IPR015946:IPR004088; KEGG: ttj:TTHA0701 transcription elongation factor NusA; PFAM: NusA domain protein; RNA binding S1 domain protein; SPTR: C1XVS5 Transcription termination factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: NusA N-terminal domain; S1 RNA binding domain; TIGRFAM: transcription termination factor NusA YP_003684876.1 InterPro IPR003728; KEGG: ttj:TTHA0702 hypothetical protein; PFAM: protein of unknown function DUF150; SPTR: C1XVS4 Uncharacterized conserved protein; PFAM: Uncharacterised BCR, YhbC family COG0779 YP_003684877.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterProIPR018062:IPR020449:IPR003313:IPR009057:IPR 000005:IPR018060:IPR012287; KEGG: sro:Sros_2887 transcriptional regulator, AraC family; PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: C1XVS2 AraC-like regulator; PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family YP_003684878.1 COGs: COG0266 Formamidopyrimidine-DNA glycosylase; InterProIPR000191:IPR012319:IPR010979:IPR015886:IPR 000214; KEGG: ttj:TTHA1806 MutM protein (formamidopyrimidine-DNA glycosylase) (Fpg); PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; Formamidopyrimidine-DNA glycosylase catalytic domain protein; PRIAM: DNA-formamidopyrimidine glycosylase; SPTR: C1XVS1 DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase H2TH domain; Formamidopyrimidine-DNA glycosylase N-terminal domain; Zinc finger found in FPG and IleRS; TIGRFAM: formamidopyrimidine-DNA glycosylase (fpg) YP_003684879.1 KEGG: elongation factor-2 kinase-like protein; SPTR: C1XVR8 Putative uncharacterized protein YP_003684880.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR016040:IPR001509; KEGG: tth:TT_P0054 NADH-ubiquinone oxidoreductase 39 kDa subunit/NADH dehydrogenase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: C1XLJ8 Predicted nucleoside-diphosphate sugar epimerase; PFAM: NAD dependent epimerase/dehydratase family YP_003684881.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterProIPR012318:IPR018490:IPR001808:IPR000595:IPR 011991:IPR014710; KEGG: tth:TT_P0055 regulatory protein; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; cyclic nucleotide-binding; SPTR: C1XVR5 cAMP-binding protein; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain YP_003684883.1 COGs: COG0789 transcriptional regulator protein; InterPro IPR009061:IPR006158:IPR000551:IPR003759; KEGG: tth:TT_P0056 transcriptional regulator; PFAM: regulatory protein MerR; cobalamin B12-binding domain protein; SMART: regulatory protein MerR; SPTR: C1XVR4 Transcriptional regulator, MerR family; PFAM: MerR family regulatory protein; B12 binding domain YP_003684884.1 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: dge:Dgeo_0522 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: C1XVR3 Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain YP_003684885.1 COGs: COG1562 Phytoene/squalene synthetase; InterPro IPR008949:IPR002060; KEGG: ttj:TTHB101 phytoene synthase; PFAM: Squalene/phytoene synthase; PRIAM: Phytoene synthase; SPTR: C1XVR2 Phytoene synthase; PFAM: Squalene/phytoene synthase YP_003684886.1 COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR013027; KEGG: dge:Dgeo_2310 FAD dependent oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: C1XVR1 Phytoene dehydrogenase-like oxidoreductase; PFAM: Thi4 family YP_003684887.1 InterPro IPR008671; KEGG: chl:Chy400_1967 lycopene beta and epsilon cyclase; PFAM: Lycopene beta and epsilon cyclase; SPTR: C1XVR0 FAD dependent oxidoreductase; PFAM: Lycopene cyclase protein; TIGRFAM: lycopene cyclase family protein YP_003684888.1 COGs: COG2324 membrane protein; InterPro IPR007354; KEGG: ddr:Deide_2p01210 hypothetical protein; putative membrane protein; PFAM: protein of unknown function DUF422; SPTR: C1XVQ9 Predicted membrane protein, COG2324; PFAM: Protein of unknown function (DUF422) YP_003684889.1 COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: dge:Dgeo_2308 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: C1XVQ8 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: Acyltransferase YP_003684890.1 COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: dge:Dgeo_2307 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: C1XVQ7 Glycosyl transferase; PFAM: Glycosyl transferase family 2 YP_003684891.1 COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR006076; KEGG: dra:DR_2250 methoxyneurosporene dehydrogenase; PFAM: FAD dependent oxidoreductase; SPTR: C1XVQ6 Phytoene dehydrogenase-like oxidoreductase; PFAM: FAD dependent oxidoreductase; TIGRFAM: phytoene desaturase YP_003684892.1 COGs: COG2124 Cytochrome P450; InterPro IPR017972:IPR017973:IPR002401:IPR001128; KEGG: nml:Namu_2497 cytochrome P450; PFAM: cytochrome P450; SPTR: C1XVQ5 Cytochrome P450; PFAM: Cytochrome P450 YP_003684893.1 COGs: COG1607 Acyl-CoA hydrolase; InterPro IPR006683; KEGG: ttj:TTHA1804 acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; SPTR: C1XVQ4 Acyl-CoA hydrolase; PFAM: Thioesterase superfamily YP_003684894.1 COGs: COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenase; InterPro IPR011179:IPR000262:IPR013785; KEGG: ttj:TTHB110 isopentenyl pyrophosphate isomerase; PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; PRIAM: Isopentenyl-diphosphate Delta-isomerase; SPTR: C1XVQ3 Isopentenyl-diphosphate delta-isomerase, type 2; TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 2; PFAM: FMN-dependent dehydrogenase; TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 2 YP_003684895.1 InterPro IPR012337:IPR002559; KEGG: cau:Caur_2446 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: C1XPT2 Transposase family protein; PFAM: Transposase DDE domain YP_003684896.1 InterPro IPR012337:IPR009057:IPR001584; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XX52 Integrase family protein (Fragment); PFAM: Integrase core domain YP_003684897.1 InterPro IPR012337:IPR002559; KEGG: cau:Caur_2446 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: C1XPT2 Transposase family protein; PFAM: Transposase DDE domain YP_003684898.1 InterProIPR013105:IPR019734:IPR013026:IPR001440:IPR 011990:IPR011717; KEGG: ttj:TTHA1659 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide repeat; SPTR: C1XUS0 Tfp pilus assembly protein PilF YP_003684899.1 InterPro IPR007730; KEGG: ttj:TTHA1658 hypothetical protein; PFAM: Sporulation domain protein; SPTR: C1XUR9 Sporulation related protein; PFAM: Sporulation related domain YP_003684900.1 COGs: COG2344 AT-rich DNA-binding protein; InterPro IPR016040:IPR003781:IPR009718:IPR011991; KEGG: ttj:TTHA1657 redox-sensing transcriptional repressor REX; PFAM: CoA-binding domain protein; Rex DNA-binding domain protein; SMART: CoA-binding domain protein; SPTR: C1XUR8 AT-rich DNA-binding protein; PFAM: CoA binding domain; Putative DNA-binding protein N-terminus YP_003684901.1 KEGG: tth:TTC1292 hypothetical protein; SPTR: C1XLH8 Putative uncharacterized protein YP_003684902.1 COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092:IPR008949; KEGG: tth:TTC1291 octaprenyl-diphosphate synthase; PFAM: Polyprenyl synthetase; PRIAM: Dimethylallyltranstransferase; SPTR: C1XUR7 Geranylgeranyl pyrophosphate synthase; PFAM: Polyprenyl synthetase YP_003684903.1 COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterProIPR006095:IPR016040:IPR006097:IPR006096:IPR 014362; KEGG: ttj:TTHA1577 putative NAD-dependent glutamate dehydrogenase; PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; PRIAM: Glutamate dehydrogenase (NAD(P)(+)); SPTR: C1XUR6 Glutamate dehydrogenase (NADP); PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YP_003684904.1 COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterProIPR016040:IPR014362:IPR006096:IPR006095:IPR 006097; KEGG: tth:TTC1211 glutamate dehydrogenase; PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; SMART: Glu/Leu/Phe/Val dehydrogenase; SPTR: C1XUR5 Glutamate dehydrogenase (NADP); PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YP_003684905.1 COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR016181:IPR000182; KEGG: tth:TTC1210 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: C1XUR4 Acetyltransferase, ribosomal protein N-acetylase; PFAM: Acetyltransferase (GNAT) family YP_003684906.1 COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006140:IPR016040:IPR006139; KEGG: ttj:TTHA1574 putative dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; SPTR: C1XUR3 Phosphoglycerate dehydrogenase-like oxidoreductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YP_003684907.1 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: hau:Haur_4232 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: C1XUR2 Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain YP_003684908.1 COGs: COG0322 Nuclease subunit of the excinuclease complex; InterProIPR003583:IPR009055:IPR001162:IPR000305:IPR 001943:IPR004791:IPR010994; KEGG: ttj:TTHA1548 excinuclease ABC subunit C (UvrC); PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; UvrB/UvrC protein; SMART: Excinuclease ABC C subunit domain protein; Helix-hairpin-helix DNA-binding class 1; SPTR: C1XUR1 Excinuclease ABC subunit C; TIGRFAM: excinuclease ABC, C subunit; PFAM: UvrB/uvrC motif; UvrC Helix-hairpin-helix N-terminal; GIY-YIG catalytic domain; TIGRFAM: excinuclease ABC, C subunit YP_003684909.1 KEGG: ttj:TTHA0496 hypothetical protein; PRIAM: NADH dehydrogenase (quinone); SPTR: C1XUR0 Putative uncharacterized protein; PFAM: NADH-quinone oxidoreductase chain 15 YP_003684910.1 COGs: COG1881 Phospholipid-binding protein; InterPro IPR005247:IPR008914; KEGG: cja:CJA_0422 YbcL; PFAM: PEBP family protein; SPTR: C1XUQ7 Phospholipid-binding protein, PBP family; PFAM: Phosphatidylethanolamine-binding protein; TIGRFAM: conserved hypothetical protein TIGR00481 YP_003684911.1 COGs: COG1495 Disulfide bond formation protein DsbB; InterPro IPR012187:IPR003752; KEGG: ttj:TTHA0435 disulfide bond formation protein B; PFAM: Disulphide bond formation protein DsbB; SPTR: C1XUQ6 Disulfide bond formation protein DsbB; PFAM: Disulfide bond formation protein DsbB YP_003684912.1 KEGG: dra:DR_1575 hypothetical protein; SPTR: C1XUQ5 Putative uncharacterized protein YP_003684913.1 COGs: COG0552 Signal recognition particle GTPase; InterPro IPR000897:IPR004390:IPR013822:IPR003593; KEGG: tth:TTC0068 signal recognition particle receptor FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; SPTR: C1XUQ4 Signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; TIGRFAM: signal recognition particle-docking protein FtsY YP_003684914.1 COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; InterProIPR001412:IPR020060:IPR004527:IPR008925:IPR 020058:IPR014729:IPR020061:IPR020752:IPR020751; KEGG: ttj:TTHA0438 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; SPTR: C1XH94 Glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-tRNA synthetase, bacterial family YP_003684915.1 COGs: COG1137 ABC-type (unclassified) transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: ttj:TTHA0439 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XUQ1 ABC-type (Unclassified) transport system, ATPase component; PFAM: ABC transporter YP_003684916.1 COGs: COG4372 Uncharacterized protein with the myosin-like domain; InterPro IPR009053; KEGG: ttj:TTHA0440 hypothetical protein; SPTR: C1XUQ0 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3084) YP_003684917.1 COGs: COG2423 ornithine cyclodeaminase mu-crystallin homolog; InterPro IPR016040:IPR003462; KEGG: rxy:Rxyl_2927 ornithine cyclodeaminase; PFAM: ornithine cyclodeaminase/mu-crystallin; SPTR: C1XUP9 Predicted ornithine cyclodeaminase, mu-crystallin; PFAM: Ornithine cyclodeaminase/mu-crystallin family YP_003684918.1 COGs: COG0249 Mismatch repair ATPase (MutS family); InterProIPR016151:IPR000432:IPR005748:IPR007860:IPR 007696:IPR007695:IPR007861; KEGG: ttj:TTHA1324 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS III domain protein; MutS IV domain protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; SPTR: C1XUP8 DNA mismatch repair protein MutS; TIGRFAM: DNA mismatch repair protein MutS; PFAM: MutS family domain IV; MutS domain II; MutS domain V; MutS domain I; MutS domain III; TIGRFAM: DNA mismatch repair protein MutS YP_003684919.1 COGs: COG0323 DNA mismatch repair enzyme (predicted ATPase); InterProIPR020568:IPR014790:IPR003594:IPR014721:IPR 014763:IPR013507:IPR014762; KEGG: ttj:TTHA1323 DNA mismatch repair protein MutL; PFAM: MutL dimerisation; ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; SMART: MutL dimerisation; ATP-binding region ATPase domain protein; SPTR: C1XUP7 DNA mismatch repair protein MutL; TIGRFAM: DNA mismatch repair protein MutL; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; MutL C terminal dimerisation domain; DNA mismatch repair protein, C-terminal domain; TIGRFAM: DNA mismatch repair protein MutL YP_003684920.1 COGs: COG0788 Formyltetrahydrofolate hydrolase; InterPro IPR002376:IPR004810:IPR002912; KEGG: drt:Dret_0523 formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; SPTR: C1XUP6 Formyltetrahydrofolate deformylase; TIGRFAM: formyltetrahydrofolate deformylase; PFAM: ACT domain; Formyl transferase; TIGRFAM: formyltetrahydrofolate deformylase YP_003684921.1 COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001254:IPR001478:IPR001940:IPR009003; KEGG: ttj:TTHA1320 periplasmic serine protease; PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; SPTR: C1XUP5 Trypsin-like serine protease with C-terminal PDZ domain; PFAM: Trypsin YP_003684922.1 COGs: COG1427 periplasmic solute-binding protein; InterPro IPR003773; KEGG: ttj:TTHA0803 hypothetical protein; PFAM: protein of unknown function DUF178; SPTR: C1XUP4 Predicted periplasmic solute-binding protein; PFAM: Putative periplasminc binding protein (DUF178) YP_003684923.1 COGs: COG1060 Thiamine biosynthesis protein ThiH; InterProIPR020050:IPR007197:IPR006638:IPR005244:IPR 013785; KEGG: ttj:TTHA0804 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: C1XUP3 Putative uncharacterized protein; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM domain protein, CofH subfamily YP_003684924.1 COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR010982:IPR001761; KEGG: tth:TTC0455 transcriptional repressor; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; SPTR: C1XUP2 Transcriptional regulator, LacI family; PFAM: Bacterial regulatory proteins, lacI family; family YP_003684925.1 COGs: COG0344 membrane protein; InterPro IPR003811; KEGG: ttj:TTHA0808 hypothetical protein; PFAM: protein of unknown function DUF205; SPTR: C1XUN9 Predicted membrane protein, COG0344; PFAM: Domain of unknown function (DUF205); TIGRFAM: conserved hypothetical integral membrane protein TIGR00023 YP_003684926.1 COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR017871:IPR003439:IPR003593; KEGG: ddr:Deide_05240 putative ABC transporter, ATP-binding component; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XUN8 ATPase component of ABC transporters with duplicated ATPase domain; PFAM: ABC transporter YP_003684927.1 COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR011234:IPR002529:IPR018833; KEGG: ttj:TTHA0809 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF2437; PRIAM: 5-carboxymethyl-2-hydroxymuconate Delta-isomerase; SPTR: C1XUN7 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase; PFAM: Domain of unknown function (DUF2437); Fumarylacetoacetate (FAA) hydrolase family YP_003684928.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001279; KEGG: tth:TTC0458 metallo-beta-lactamase protein; SMART: beta-lactamase domain protein; SPTR: C1XUN6 Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily YP_003684929.1 COGs: COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN; InterPro IPR002376:IPR004607; KEGG: ttj:TTHA0811 phosphoribosylglycinamide formyltransferase (PurD); PFAM: formyl transferase domain protein; SPTR: C1XUN5 Phosphoribosylglycinamide formyltransferase; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase; TIGRFAM: phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent YP_003684930.1 COGs: COG0151 Phosphoribosylamine-glycine ligase; InterProIPR020559:IPR000115:IPR016185:IPR011054:IPR 020562:IPR020561:IPR020560:IPR013817:IPR013815:IPR013816:I PR011761; KEGG: tth:TTC0460 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; PRIAM: Phosphoribosylamine--glycine ligase; SPTR: C1XUN4 Phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, N domain; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase YP_003684931.1 KEGG: hypothetical protein; SPTR: C1XUN3 Putative uncharacterized protein YP_003684932.1 COGs: COG0483 fructose-1 6-bisphosphatase of inositol monophosphatase family; InterPro IPR020550:IPR020583:IPR000760; KEGG: tth:TTC1928 myo-inositol-1(or 4)-monophosphatase; PFAM: inositol monophosphatase; SPTR: C1XUN2 Inositol monophosphatase/fructose-1,6-bisphosphatase family protein; PFAM: Inositol monophosphatase family YP_003684933.1 COGs: COG2890 Methylase of polypeptide chain release factors; InterPro IPR004556:IPR007848:IPR002052; KEGG: ttj:TTHA0441 HemK family methyltransferase; PFAM: methyltransferase small; SPTR: C1XUN1 Putative methylase of HemK family; TIGRFAM: modification methylase, HemK family; PFAM: Methyltransferase small domain; TIGRFAM: HemK family putative methylases; protein-(glutamine-N5) methyltransferase, release factor-specific YP_003684934.1 COGs: COG1847 RNA-binding protein; InterPro IPR001374; KEGG: ttj:TTHA0442 DNA/RNA-binding protein (Jag-related protein); PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; SPTR: C1XUN0 Predicted RNA-binding protein; PFAM: R3H domain YP_003684935.1 COGs: COG0706 Preprotein translocase subunit YidC; InterPro IPR020001:IPR001708; KEGG: tth:TTC0075 hypothetical protein; PFAM: 60 kDa inner membrane insertion protein; SPTR: C1XUM9 Preprotein translocase subunit YidC; TIGRFAM: membrane protein insertase, YidC/Oxa1 family; PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain YP_003684936.1 COGs: COG0759 conserved hypothetical protein; InterPro IPR002696; KEGG: ttj:TTHA0444 alpha-hemolysin; PFAM: protein of unknown function DUF37; SPTR: C1XUM8 Putative uncharacterized protein; PFAM: Domain of unknown function DUF37; TIGRFAM: conserved hypothetical protein TIGR00278 YP_003684937.1 COGs: COG0594 RNase P protein component; InterPro IPR000100:IPR014721:IPR020568:IPR020539; KEGG: ttj:TTHA0445 ribonuclease P protein component; PFAM: ribonuclease P protein; SPTR: C1XUM7 Ribonuclease P protein component; TIGRFAM: ribonuclease P protein component; PFAM: Ribonuclease P; TIGRFAM: ribonuclease P protein component, eubacterial YP_003684938.1 InterPro IPR000271; KEGG: ttj:TTHA0446 50S ribosomal protein L34; PFAM: ribosomal protein L34; SPTR: C1XUM6 50S ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type YP_003684939.1 InterPro IPR012337:IPR009057:IPR001584; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XT01 Integrase family protein; PFAM: Integrase core domain YP_003684940.1 COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439:IPR003593; KEGG: ttj:TTHA0447 branched-chain amino acid transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XUM1 ABC-type branched-chain amino acid transport systems, ATPase component; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter YP_003684941.1 COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR020845:IPR000873; KEGG: tth:TTC0079 long-chain-fatty-acid-CoA ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: C1XUM0 AMP-forming long-chain acyl-CoA synthetase; PFAM: AMP-binding enzyme YP_003684942.1 COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: ttj:TTHA0449 branched-chain amino acid ABC transporter, permease protein; PFAM: inner-membrane translocator; SPTR: C1XUL9 Branched-chain amino acid ABC-type transport system, permease component; PFAM: Branched-chain amino acid transport system / permease component YP_003684943.1 COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: ttj:TTHA0450 branched-chain amino acid ABC transporter, permease protein; PFAM: inner-membrane translocator; SPTR: C1XUL8 ABC-type branched-chain amino acid transport system, permease component; PFAM: Branched-chain amino acid transport system / permease component YP_003684944.1 COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; KEGG: ttj:TTHA0451 branched chain amino acid ABC transporter amino acid-binding protein; SPTR: C1XUL7 ABC-type branched-chain amino acid transport system, periplasmic component; PFAM: Receptor family ligand binding region YP_003684945.1 COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR017871:IPR003439:IPR003593; KEGG: ttj:TTHA0452 branched-chain amino acid ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XUL6 ABC-type branched-chain amino acid transport systems, ATPase component; PFAM: ABC transporter YP_003684946.1 KEGG: hypothetical protein; SPTR: C1XUL5 Putative uncharacterized protein YP_003684947.1 COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006098:IPR016176:IPR006099:IPR014348; KEGG: ttj:TTHA1246 methylmalonyl-CoA mutase; PFAM: methylmalonyl-CoA mutase; PRIAM: Methylmalonyl-CoA mutase; SPTR: C1XUL4 Methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: Methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain YP_003684948.1 KEGG: ttj:TTHA1245 hypothetical protein; SPTR: C1XUL3 Putative uncharacterized protein YP_003684949.1 COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: ttj:TTHA1244 hypothetical protein; PFAM: helix-turn-helix HxlR type; SPTR: C1XUL2 Transcriptional regulator; PFAM: HxlR-like helix-turn-helix YP_003684950.1 COGs: COG2894 Septum formation inhibitor-activating ATPase; InterPro IPR010223:IPR002586; KEGG: ttj:TTHA1243 septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; SPTR: C1XUL1 Septum site-determining protein MinD; TIGRFAM: septum site-determining protein MinD; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: septum site-determining protein MinD YP_003684951.1 COGs: COG0851 Septum formation topological specificity factor; InterPro IPR005527; KEGG: ttj:TTHA1242 cell division inhibitor MinE; PFAM: Septum formation topological specificity factor MinE; SPTR: C1XUL0 Cell division topological specificity factor MinE; TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; TIGRFAM: cell division topological specificity factor MinE YP_003684952.1 COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR011923:IPR018365:IPR001182; KEGG: ttj:TTHA1241 rod shape determining protein RodA; PFAM: cell cycle protein; SPTR: C1XUK9 Cell elongation-specific peptidoglycan biosynthesis regulator RodA; TIGRFAM: rod shape-determining protein RodA; PFAM: Cell cycle protein; TIGRFAM: rod shape-determining protein RodA YP_003684953.1 InterPro IPR006312:IPR003369; KEGG: ttj:TTHA0628 sec-independent protein translocase protein; PFAM: sec-independent translocation protein mttA/Hcf106; SPTR: C1XUK8 Sec-independent protein translocase TatA; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family YP_003684954.1 COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR017871:IPR008995:IPR003439:IPR003593; KEGG: ttj:TTHA0715 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XUK7 ABC-type spermidine/putrescine transport system, ATPase component; PFAM: ABC transporter YP_003684955.1 COGs: COG4149 ABC-type molybdate transport system permease component; InterPro IPR011867:IPR000515; KEGG: ttj:TTHA0716 molybdenum ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XUK6 Molybdate ABC transporter, permease protein; TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: molybdate ABC transporter, permease protein YP_003684956.1 COGs: COG0725 ABC-type molybdate transport system periplasmic component; InterPro IPR005950:IPR006059; KEGG: mca:MCA1378 molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: C1XUK5 Molybdenum ABC transporter, periplasmic molybdate-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein YP_003684957.1 InterPro IPR000572; KEGG: dfe:Dfer_5339 oxidoreductase molybdopterin binding; PFAM: oxidoreductase molybdopterin binding; SPTR: C1XUK4 Sulfite oxidase-like oxidoreductase; PFAM: Oxidoreductase molybdopterin binding domain YP_003684958.1 InterPro IPR005116:IPR008995; KEGG: rxy:Rxyl_3207 molybdenum-pterin binding domain-containing protein; PFAM: TOBE domain protein; SPTR: C1XUK3 ABC-type molybdate transport system, ATPase component; PFAM: TOBE domain; TIGRFAM: molybdenum-pterin binding domain YP_003684959.1 InterPro IPR005149:IPR011991; KEGG: bbt:BBta_0813 PadR family transcriptional regulator; PFAM: transcriptional regulator PadR family protein; SPTR: C1XUK2 Predicted transcriptional regulator; PFAM: Transcriptional regulator PadR-like family YP_003684960.1 COGs: COG1720 conserved hypothetical protein; InterPro IPR001378; KEGG: dma:DMR_43460 hypothetical protein; PFAM: protein of unknown function UPF0066; SPTR: C1XUK1 Putative uncharacterized protein; PFAM: Uncharacterised protein family UPF0066; TIGRFAM: conserved hypothetical protein TIGR00104 YP_003684961.1 InterPro IPR009056:IPR003088; KEGG: tth:TTC1058 cytochrome c-552 precursor; PFAM: cytochrome c class I; SPTR: C1XUK0 Cytochrome c; PFAM: Cytochrome c YP_003684962.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XPF2 Integrase family protein; PFAM: Integrase core domain YP_003684963.1 InterPro IPR009056:IPR003088; KEGG: ttj:TTHA1423 cytochrome c-552 precursor; PFAM: cytochrome c class I; SPTR: C1XUJ8 Cytochrome c; PFAM: Cytochrome c YP_003684964.1 COGs: COG0687 Spermidine/putrescine-binding periplasmic protein; InterPro IPR006059:IPR001188; KEGG: tth:TTC0873 spermidine/putrescine-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: C1XUJ7 Spermidine/putrescine-binding periplasmic protein; PFAM: Bacterial extracellular solute-binding protein YP_003684965.1 COGs: COG1177 ABC-type spermidine/putrescine transport system permease component II; InterPro IPR000515; KEGG: ttj:TTHA1238 spermidine/putrescine ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XUJ6 ABC-type spermidine/putrescine transport system, permease component II; PFAM: Binding-protein-dependent transport system inner membrane component YP_003684966.1 COGs: COG1176 ABC-type spermidine/putrescine transport system permease component I; InterPro IPR000515; KEGG: ttj:TTHA1239 spermidine/putrescine ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XUJ5 ABC-type spermidine/putrescine transport system, permease component I; PFAM: Binding-protein-dependent transport system inner membrane component YP_003684967.1 COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterProIPR003593:IPR003439:IPR017879:IPR005893:IPR 013611:IPR017871:IPR008995; KEGG: ttj:TTHA1240 spermidine/putrescine ABC transporter, ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; SPTR: C1XUJ4 Spermidine/putrescine ABC transporter ATP-binding subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; tmRNA as predicted by Rfam (RF00023), score 203.38; PFAM: ABC transporter; TOBE domain; TIGRFAM: spermidine/putrescine ABC transporter ATP-binding subunit YP_003684968.1 InterPro IPR002035; KEGG: ttj:TTHA1061 hypothetical protein; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: C1XUJ3 Mg-chelatase subunit ChlD; PFAM: von Willebrand factor type A domain YP_003684969.1 COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209; KEGG: dge:Dgeo_1188 peptidase S8 and S53, subtilisin, kexin, sedolisin; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: C1XUJ2 Subtilisin-like serine protease; PFAM: Subtilase family YP_003684970.1 COGs: COG1316 Transcriptional regulator; InterPro IPR004474; KEGG: tth:TTC0373 membrane-bound protein LytR; PFAM: cell envelope-related transcriptional attenuator; SPTR: C1XUJ1 Cell envelope-related transcriptional attenuator; TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: Cell envelope-related transcriptional attenuator domain; TIGRFAM: cell envelope-related function transcriptional attenuator common domain YP_003684971.1 KEGG: nml:Namu_0756 peptidase M1 membrane alanine aminopeptidase; SPTR: C1XUJ0 Putative uncharacterized protein YP_003684972.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR013762:IPR002104:IPR011010; KEGG: tth:TTC0665 transposase; PFAM: integrase family protein; SPTR: C1XUI9 Site-specific recombinase XerD; PFAM: Phage integrase family YP_003684973.1 KEGG: mca:MCA1643 peptidyl-prolyl cis-trans isomerase family protein; SPTR: C1XUI8 Putative uncharacterized protein YP_003684974.1 KEGG: hypothetical protein; SPTR: C1XUI7 Putative uncharacterized protein YP_003684975.1 KEGG: fal:FRAAL4071 putative enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific); SPTR: C1XUI6 Putative uncharacterized protein YP_003684976.1 InterPro IPR015330; KEGG: tth:TTC0656 hypothetical protein; PFAM: Bifunctional DNA primase/polymerase; SPTR: C1XUI5 DNA/RNA helicase, superfamily II; PFAM: Bifunctional DNA primase/polymerase, N-terminal; Domain of unknown function (DUF927) YP_003684977.1 InterPro IPR010093:IPR010260:IPR009061; KEGG: dau:Daud_0403 DNA binding domain-containing protein; PFAM: Prophage CP4-57 regulatory; SPTR: C1XUI4 DNA-binding protein, excisionase family; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: Prophage CP4-57 regulatory protein (AlpA); TIGRFAM: DNA binding domain, excisionase family YP_003684978.1 KEGG: hypothetical protein LOC100279903; SPTR: C1XUI3 Putative uncharacterized protein YP_003684979.1 COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR006055:IPR013520:IPR012337; KEGG: afw:Anae109_3823 exonuclease RNase T and DNA polymerase III; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; SPTR: C1XUI0 DNA polymerase III epsilon subunit-like 3'-5' exonuclease; PFAM: Exonuclease YP_003684980.1 COGs: COG2905 signal-transduction protein containing cAMP-binding and CBS domains; InterProIPR000644:IPR018490:IPR000595:IPR005105:IPR 018821:IPR014710; KEGG: tth:TTC0465 cyclic nucleotide binding protein/CBS domain-containing proteins; PFAM: protein of unknown function DUF294 nucleotidyltransferase putative; CBS domain containing protein; cyclic nucleotide-binding; Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding; SMART: CBS domain containing protein; cyclic nucleotide-binding; SPTR: C1XUH9 Predicted signal-transduction protein containing cAMP-binding and CBS domains; PFAM: Putative nucleotidyltransferase substrate binding domain; CBS domain; Cyclic nucleotide-binding domain; Putative nucleotidyltransferase DUF294 YP_003684981.1 InterPro IPR002559:IPR012337; KEGG: cau:Caur_2446 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: C1XPT2 Transposase family protein; PFAM: Transposase DDE domain YP_003684982.1 COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR020845:IPR000873:IPR014757:IPR005471; KEGG: tth:TTC0886 acetyl-coenzyme A synthetase; PFAM: AMP-dependent synthetase and ligase; Transcriptional regulator IclR ; regulatory protein IclR; SPTR: C1XUH6 Acyl-CoA synthetase/AMP-acid ligase; PFAM: Domain of unknown function (DUF3448); IclR helix-turn-helix domain; Bacterial transcriptional regulator; AMP-binding enzyme YP_003684983.1 COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR020845:IPR000873:IPR011904; KEGG: ttj:TTHA1248 acetyl-coenzyme A synthetase; PFAM: AMP-dependent synthetase and ligase; SPTR: C1XUH5 Acetyl-coenzyme A synthetase; TIGRFAM: acetate/CoA ligase; PFAM: Domain of unknown function (DUF3448); AMP-binding enzyme; TIGRFAM: acetate--CoA ligase YP_003684984.1 COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component; InterPro IPR003593:IPR003439; KEGG: ttj:TTHA0453 Mn2+/Zn2+ ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XUH4 ATPase component of Mn/Zn ABC-type transporter; PFAM: ABC transporter YP_003684985.1 COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; InterPro IPR001626; KEGG: ttj:TTHA0454 Mn2+/Zn2+ ABC transporter, permease protein; PFAM: ABC-3 protein; SPTR: C1XUH3 ABC-type Mn2+/Zn2+ transport system, permease component; PFAM: ABC 3 transport family YP_003684986.1 COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: ttj:TTHA0455 rrf2 family protein, transcriptional regulator; PFAM: protein of unknown function UPF0074; SPTR: C1XUH2 Transcriptional regulator, BadM/Rrf2 family; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein (putative transcriptional regulator) YP_003684987.1 COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterProIPR016454:IPR015421:IPR000192:IPR020578:IPR 015424; KEGG: ttj:TTHA0456 cysteine desulfurase/cysteine sulfinate desulfinase; PFAM: aminotransferase class V; PRIAM: Cysteine desulfurase; SPTR: C1XUH1 Cysteine desulfurase family protein; PFAM: Aminotransferase class-V YP_003684988.1 COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR020845:IPR000873; KEGG: ttj:TTHA1463 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: C1XUH0 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; PFAM: AMP-binding enzyme YP_003684989.1 COGs: COG1926 phosphoribosyltransferase; InterPro IPR000836; KEGG: ttj:TTHA1462 putative phosphoribosyltransferase; PFAM: phosphoribosyltransferase; SPTR: C1XUG9 Predicted phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain YP_003684990.1 COGs: COG1917 conserved hypothetical protein contains double-stranded beta-helix domain; InterPro IPR014710:IPR013096:IPR011051; KEGG: ttj:TTHA1461 hypothetical protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: C1XUG8 Uncharacterized conserved protein, contains double-stranded beta-helix domain; PFAM: Cupin domain YP_003684991.1 COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: sus:Acid_5898 N-methyltryptophan oxidase; PFAM: FAD dependent oxidoreductase; PRIAM: Sarcosine oxidase; SPTR: C1XUG7 Glycine/D-amino acid oxidase, deaminating; PFAM: FAD dependent oxidoreductase; TIGRFAM: sarcosine oxidase, monomeric form YP_003684992.1 COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; InterPro IPR017439:IPR010168:IPR011650:IPR002933; KEGG: cya:CYA_2514 M20D family peptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; PRIAM: Aminoacylase; SPTR: C1XUG6 Amidohydrolase; TIGRFAM: amidohydrolase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase YP_003684993.1 KEGG: npu:Npun_F3823 hypothetical protein; SPTR: C1XUG5 Putative uncharacterized protein YP_003684994.1 COGs: COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; InterPro IPR000581:IPR020558:IPR004404; KEGG: ttj:TTHA1234 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; PRIAM: Dihydroxy-acid dehydratase; SPTR: C1XUG4 Dihydroxyacid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: Dehydratase family; TIGRFAM: dihydroxy-acid dehydratase YP_003684995.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR016040:IPR002198:IPR002347; KEGG: ttj:TTHA1233 short-chain dehydrogenase/reductase family protein; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: C1XUG3 Putative uncharacterized protein; PFAM: short chain dehydrogenase YP_003684996.1 COGs: COG0473 Isocitrate/isopropylmalate dehydrogenase; InterPro IPR004429:IPR019818:IPR001804; KEGG: ttj:TTHA1230 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; PRIAM: 3-isopropylmalate dehydrogenase; SPTR: C1XUG2 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase YP_003684997.1 COGs: COG0066 3-isopropylmalate dehydratase small subunit; InterPro IPR015928:IPR004431:IPR000573; KEGG: ote:Oter_2681 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; SPTR: C1XUG1 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase C-terminal domain; TIGRFAM: 3-isopropylmalate dehydratase, small subunit YP_003684998.1 KEGG: mag:amb1213 major facilitator superfamily permease; SPTR: C1XUG0 Putative uncharacterized protein YP_003684999.1 COGs: COG0065 3-isopropylmalate dehydratase large subunit; InterProIPR015931:IPR001030:IPR018136:IPR015932:IPR 004430; KEGG: ote:Oter_2680 isopropylmalate isomerase large subunit; PFAM: aconitate hydratase domain protein; SPTR: C1XUF9 3-isopropylmalate dehydratase, large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: Aconitase family (aconitate hydratase); TIGRFAM: 3-isopropylmalate dehydratase, large subunit YP_003685000.1 InterPro IPR002559; KEGG: tth:TT_P0158 hypothetical protein; PFAM: transposase IS4 family protein; SPTR: C1XPN1 Transposase family protein; PFAM: Transposase DDE domain YP_003685001.1 COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001478:IPR001254:IPR009003:IPR001940; KEGG: ttj:TTHA0769 periplasmic serine protease; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; SPTR: C1XUF5 Trypsin-like serine protease with C-terminal PDZ domain; PFAM: Trypsin YP_003685002.1 COGs: COG0180 Tryptophanyl-tRNA synthetase; InterPro IPR014729:IPR002306:IPR002305; KEGG: ttj:TTHA1227 tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; PRIAM: Tryptophan--tRNA ligase; SPTR: C1XUF4 Tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tryptophanyl-tRNA synthetase YP_003685003.1 KEGG: dar:Daro_1925 phosphoribosylformylglycinamidine synthase; SPTR: C1XUF3 Putative uncharacterized protein YP_003685004.1 COGs: COG1354 conserved hypothetical protein; InterPro IPR003768; KEGG: tth:TTC0863 hypothetical protein; PFAM: chromosome segregation and condensation protein ScpA; SPTR: C1XUF2 Uncharacterized conserved protein YP_003685005.1 COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR016039:IPR002155:IPR016038; KEGG: tth:TTC0191 acetyl-CoA acetyltransferase; SPTR: C1XUF1 Acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases YP_003685006.1 InterPro IPR012867; KEGG: sti:Sthe_0222 protein of unknown function DUF1648; PFAM: protein of unknown function DUF1648; SPTR: C1XUF0 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1648) YP_003685007.1 COGs: COG0287 Prephenate dehydrogenase; InterPro IPR016040:IPR003099:IPR002912; KEGG: ttj:TTHA0799 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; amino acid-binding ACT domain protein; PRIAM: Prephenate dehydrogenase; SPTR: C1XUE9 Prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; ACT domain YP_003685008.1 COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR003736:IPR006683; KEGG: ttj:TTHA1546 thioesterase family protein; PFAM: thioesterase superfamily protein; SPTR: C1XUE8 Uncharacterized conserved protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1 YP_003685009.1 KEGG: ttj:TTHA1545 hypothetical protein; SPTR: C1XUE7 Putative uncharacterized protein YP_003685010.1 KEGG: tth:TTC1178 hypothetical protein; SPTR: C1XUE6 Putative uncharacterized protein YP_003685011.1 COGs: COG0585 conserved hypothetical protein; InterPro IPR011760:IPR001656:IPR020119:IPR020103; KEGG: ttj:TTHA1531 hypothetical protein; PFAM: tRNA pseudouridine synthase D TruD; SPTR: C1XUE5 Putative uncharacterized protein; PFAM: tRNA pseudouridine synthase D (TruD); TIGRFAM: conserved hypothetical protein TIGR00094 YP_003685012.1 COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; InterProIPR011063:IPR016193:IPR012795:IPR014729:IPR 002125:IPR016192; KEGG: tth:TTC1176 putative cell cycle protein MesJ-like protein; PFAM: PP-loop domain protein; CMP/dCMP deaminase zinc-binding; SPTR: C1XUE4 tRNA(Ile)-lysidine synthetase; TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop family; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: tRNA(Ile)-lysidine synthetase, N-terminal domain YP_003685013.1 KEGG: ttj:TTHB040 hypothetical protein; SPTR: C1XUE3 Putative uncharacterized protein YP_003685014.1 COGs: COG0476 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 2; InterPro IPR016040:IPR007901:IPR009036:IPR000594; KEGG: tth:TTC0979 molybdopterin biosynthesis MoeB protein; PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; SPTR: C1XUE2 Dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis; PFAM: MoeZ/MoeB domain; ThiF family YP_003685015.1 COGs: COG0372 Citrate synthase; InterPro IPR002020:IPR016141:IPR011278:IPR016142; KEGG: tth:TTC0978 citrate synthase; PFAM: Citrate synthase; PRIAM: Citrate (Si)-synthase; SPTR: C1XUE1 Citrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase II YP_003685016.1 COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); InterPro IPR003699; KEGG: ttj:TTHA1058 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; SPTR: C1XUE0 S-adenosylmethionine--tRNA ribosyltransferase-isomerase; TIGRFAM:S-adenosylmethionine/tRNA-ribosyltransferas e-isomerase; PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_003685017.1 COGs: COG1470 membrane protein; InterPro IPR018905; KEGG: ttj:TTHA1458 hypothetical protein; PFAM: Alpha-galactosidase, NPCBM associated NEW3 domain; SPTR: C1XUD9 Predicted membrane protein, COG1470; PFAM: NPCBM-associated, NEW3 domain of alpha-galactosidase YP_003685018.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: ttj:TTHA1459 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XUD8 ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter YP_003685019.1 COGs: COG1277 ABC-type transport system involved in multi-copper enzyme maturation permease component; InterPro IPR013525; KEGG: tth:TTC1096 ABC transporter permease protein; PFAM: ABC-2 type transporter; SPTR: C1XUD7 ABC-type transport system involved in multi-copper enzyme maturation, permease component YP_003685020.1 KEGG: rxy:Rxyl_0838 hypothetical protein; SPTR: C1XUD6 Putative uncharacterized protein YP_003685021.1 COGs: COG2217 Cation transport ATPase; InterProIPR006121:IPR006404:IPR006416:IPR001757:IPR 008250:IPR005834:IPR001366:IPR001969:IPR018303:IPR000150; KEGG: dge:Dgeo_2581 heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; SPTR: C1XUD5 Heavy metal-translocating P-type ATPase, Cd/Co/Hg/Pb/Zn-transporting; TIGRFAM: heavy metal translocating P-type ATPase; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase YP_003685022.1 InterPro IPR001845:IPR018334:IPR011991; KEGG: dra:DR_A0071 transcriptional repressor SmtB; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: C1XUD4 Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family YP_003685023.1 InterPro IPR002559; KEGG: chl:Chy400_1619 transposase IS5 family protein; PFAM: transposase IS4 family protein; SPTR: C1XUD2 Transposase; PFAM: Transposase DDE domain YP_003685024.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160:IPR003018; KEGG: ttj:TTHA0989 GGDEF domain-containing protein; PFAM: GGDEF domain containing protein; GAF domain protein; PRIAM: Diguanylate kinase; SMART: GGDEF domain containing protein; GAF domain protein; SPTR: C1XUD1 Diguanylate cyclase (GGDEF) domain-containing protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; GAF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_003685025.1 COGs: COG2200 FOG: EAL domain; InterPro IPR001633; KEGG: hypothetical protein; PFAM: EAL domain protein; SPTR: C1XUD0 EAL domain-containing protein; PFAM: EAL domain YP_003685026.1 InterPro IPR002559; KEGG: tth:TT_P0158 hypothetical protein; PFAM: transposase IS4 family protein; SPTR: C1XPN1 Transposase family protein; PFAM: Transposase DDE domain YP_003685027.1 COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR005920:IPR006680:IPR011059; KEGG: dra:DR_A0148 imidazolonepropionase; PFAM: amidohydrolase; PRIAM: Imidazolonepropionase; SPTR: C1XUC6 Imidazolonepropionase; TIGRFAM: imidazolonepropionase; PFAM: Amidohydrolase family; TIGRFAM: imidazolonepropionase YP_003685028.1 COGs: COG2987 Urocanate hydratase; InterPro IPR000193; KEGG: ddr:Deide_15250 putative urocanate hydratase (urocanase) (imidazolonepropionate hydrolase); PFAM: Urocanase; PRIAM: Urocanate hydratase; SPTR: C1XUC5 Urocanate hydratase; TIGRFAM: urocanate hydratase; PFAM: Urocanase; TIGRFAM: urocanate hydratase YP_003685029.1 COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011991:IPR011663; KEGG: dge:Dgeo_1763 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C1XUC4 Transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain YP_003685030.1 COGs: COG2986 Histidine ammonia-lyase; InterPro IPR008948:IPR001106:IPR005921; KEGG: dge:Dgeo_2730 histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase; PRIAM: Histidine ammonia-lyase; SPTR: C1XUC3 Histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: Phenylalanine and histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase YP_003685031.1 COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: tth:TTC0013 hypothetical protein; PFAM: protein of unknown function DUF58; SPTR: C1XUC2 Uncharacterized conserved protein; PFAM: Protein of unknown function DUF58 YP_003685032.1 COGs: COG0714 MoxR-like ATPase; InterPro IPR016366:IPR003593:IPR011703; KEGG: ttj:TTHA1499 MoxR-related protein; PFAM: ATPase associated with various cellular activities AAA_3; SMART: AAA ATPase; SPTR: C1XUC1 MoxR-like ATPase; PFAM: ATPase family associated with various cellular activities (AAA) YP_003685033.1 SPTR: C1XUC0 Putative uncharacterized protein YP_003685034.1 KEGG: pap:PSPA7_5202 integral membrane protein MviN; SPTR: C1XUB9 Putative uncharacterized protein YP_003685035.1 COGs: COG0533 Metal-dependent protease with possible chaperone activity; InterPro IPR017861:IPR000905:IPR017860; KEGG: ttj:TTHA1252 putative DNA-binding/iron metalloprotein/AP endonuclease; PFAM: peptidase M22 glycoprotease; PRIAM: O-sialoglycoprotein endopeptidase; SPTR: C1XUB8 O-sialoglycoprotein endopeptidase; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: Glycoprotease family; TIGRFAM: metalloendopeptidase, putative, glycoprotease family YP_003685036.1 COGs: COG0653 Preprotein translocase subunit SecA (ATPase RNA helicase); InterProIPR000185:IPR011130:IPR011115:IPR011116:IPR 014018; KEGG: ttj:TTHA1251 preprotein translocase subunit SecA; PFAM: SecA DEAD domain protein; SecA preprotein cross-linking region; SecA Wing and Scaffold; SPTR: C1XUB7 Protein translocase subunit secA; TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD-like domain; SecA preprotein cross-linking domain; SecA Wing and Scaffold domain; TIGRFAM: preprotein translocase, SecA subunit YP_003685037.1 COGs: COG1408 phosphohydrolase; InterPro IPR004843; KEGG: ddr:Deide_3p01711 putative phosphoesterase; PFAM: metallophosphoesterase; SPTR: C1XUB6 Predicted phosphohydrolase; PFAM: Calcineurin-like phosphoesterase YP_003685038.1 COGs: COG0217 conserved hypothetical protein; InterPro IPR017856:IPR002876; KEGG: ttj:TTHA0821 hypothetical protein; PFAM: protein of unknown function DUF28; SPTR: C1XUB5 Putative uncharacterized protein; PFAM: Domain of unknown function DUF28; TIGRFAM: conserved hypothetical protein TIGR01033 YP_003685039.1 COGs: COG2367 Beta-lactamase class A; InterPro IPR012338; KEGG: amr:AM1_3502 beta lactamase-related protein, putative; SPTR: C1XUB4 Putative uncharacterized protein YP_003685040.1 COGs: COG0182 translation initiation factor 2B subunit eIF-2B alpha/beta/delta family; InterPro IPR005251:IPR011559:IPR000649; KEGG: ttj:TTHA1072 translation initiation factor, aIF-2B alpha subunit-related protein; PFAM: initiation factor 2B related; PRIAM: S-methyl-5-thioribose-1-phosphate isomerase; SPTR: C1XUB3 Methylthioribose-1-phosphate isomerase; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: Initiation factor 2 subunit family; TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized proteins; S-methyl-5-thioribose-1-phosphate isomerase YP_003685041.1 COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: ttj:TTHA1071 competence protein ComF; PFAM: phosphoribosyltransferase; SPTR: C1XUB2 Predicted amidophosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein YP_003685042.1 KEGG: ttj:TTHA1293 hypothetical protein; SPTR: C1XUB1 Putative uncharacterized protein YP_003685043.1 COGs: COG0196 FAD synthase; InterPro IPR015865:IPR004821:IPR015864:IPR002606; KEGG: ttj:TTHA0527 riboflavin kinase/FMN adenylyltransferase; PFAM: Riboflavin kinase; FAD synthetase; SMART: Riboflavin kinase; SPTR: C1XUB0 FMN adenylyltransferase; riboflavin kinase; TIGRFAM: riboflavin biosynthesis protein RibF; cytidyltransferase-related domain protein; PFAM: Riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase; cytidyltransferase-related domain YP_003685044.1 InterPro IPR015797:IPR000086; KEGG: ttj:TTHA0528 ADP-ribose pyrophosphatase; PFAM: NUDIX hydrolase; SPTR: C1XUA9 ADP-ribose pyrophosphatase; PFAM: NUDIX domain YP_003685045.1 COGs: COG1574 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR013108; KEGG: dra:DR_2540 hypothetical protein; PFAM: Amidohydrolase 3; SPTR: C1XUA8 Predicted TIM-barrel fold metal-dependent hydrolase, COG1574; PFAM: Amidohydrolase family YP_003685046.1 COGs: COG2352 Phosphoenolpyruvate carboxylase; InterPro IPR018129:IPR015813:IPR001449; KEGG: ttj:TTHA0626 phosphoenolpyruvate carboxylase; PFAM: phosphoenolpyruvate carboxylase; PRIAM: Phosphoenolpyruvate carboxylase; SPTR: C1XUA7 Phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase YP_003685047.1 COGs: COG1432 conserved hypothetical protein; InterPro IPR002790; KEGG: tth:TTC0692 hypothetical protein; PFAM: protein of unknown function DUF88; SPTR: C1XUA6 Uncharacterized conserved protein; PFAM: Protein of unknown function DUF88 YP_003685048.1 COGs: COG0515 Serine/threonine protein kinase; InterProIPR020635:IPR002290:IPR000719:IPR017442:IPR 008271:IPR011009; KEGG: ttj:TTHA1370 serine/threonine-protein kinase-related protein; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, subgroup, catalytic domain; SPTR: C1XUA5 Protein kinase family protein; PFAM: Protein kinase domain YP_003685049.1 COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641:IPR016035; KEGG: ttj:TTHA1369 phospholipase domain-containing protein; PFAM: Patatin; SPTR: C1XUA4 Predicted esterase of the alpha-beta hydrolase superfamily; PFAM: Patatin-like phospholipase YP_003685050.1 InterPro IPR011056:IPR000223:IPR019757:IPR015927; KEGG: tth:TTC1003 signal peptidase I; SPTR: C1XUA3 Signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S26; TIGRFAM: signal peptidase I, bacterial type YP_003685051.1 COGs: COG5405 ATP-dependent protease HslVU (ClpYQ) peptidase subunit; InterPro IPR001353; KEGG: ttj:TTHA0631 ATP-dependent protease peptidase subunit; PFAM: 20S proteasome A and B subunits; SPTR: C1XUA2 ATP dependent peptidase CodWX, CodW component; PFAM: Proteasome subunit YP_003685052.1 COGs: COG1220 ATP-dependent protease HslVU (ClpYQ) ATPase subunit; InterPro IPR004491:IPR013093:IPR003593; KEGG: ttj:TTHA0630 ATP-dependent protease ATP-binding subunit HslU; PFAM: ATPase AAA-2 domain protein; SMART: AAA ATPase; SPTR: C1XUA1 Heat shock protein HslVU, ATPase subunit HslU; TIGRFAM: heat shock protein HslVU, ATPase subunit HslU; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); TIGRFAM: heat shock protein HslVU, ATPase subunit HslU YP_003685053.1 InterProIPR019734:IPR013026:IPR011990:IPR001440:IPR 013105; KEGG: ttj:TTHA0629 TPR repeat-containing O-linked GlcNAc transferase; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SPTR: C1XUA0 Flp pilus assembly protein TadD; PFAM: Tetratricopeptide repeat YP_003685054.1 COGs: COG2380 conserved hypothetical protein; KEGG: ttj:TTHA0521 hypothetical protein; SPTR: C1XU99 Uncharacterized conserved protein YP_003685055.1 COGs: COG0433 ATPase; KEGG: ttj:TTHA0522 hypothetical protein; SPTR: C1XU98 Predicted ATPase, COG0433 YP_003685056.1 KEGG: kse:Ksed_00610 predicted nuclease (RecB family); SPTR: C1XU97 Putative uncharacterized protein YP_003685057.1 KEGG: mex:Mext_2409 hypothetical protein; SPTR: C1XU96 Putative uncharacterized protein YP_003685058.1 KEGG: elnb; elastin b; SPTR: C1XU95 Putative uncharacterized protein YP_003685059.1 COGs: COG0817 Holliday junction resolvasome endonuclease subunit; InterPro IPR012337:IPR002176; KEGG: ttj:TTHA1090 Holliday junction resolvase RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; PRIAM: Crossover junction endodeoxyribonuclease; SPTR: C1XU94 Holliday junction endonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC YP_003685060.1 COGs: COG0206 Cell division GTPase; InterProIPR003008:IPR018316:IPR000158:IPR020805:IPR 019746:IPR008280; KEGG: ttj:TTHA1089 cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ, 2-layer sandwich domain; SMART: Tubulin/FtsZ, 2-layer sandwich domain; SPTR: C1XU93 Cell division protein ftsZ; TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ family, GTPase domain; FtsZ family, C-terminal domain; TIGRFAM: cell division protein FtsZ YP_003685061.1 COGs: COG0849 Actin-like ATPase involved in cell division; InterPro IPR020823:IPR003494; KEGG: tth:TTC0723 cell division protein FtsA; PFAM: cell division protein FtsA; SMART: cell division protein FtsA; SPTR: C1XU92 Cell division protein FtsA; TIGRFAM: cell division protein FtsA; PFAM: Cell division protein FtsA; TIGRFAM: cell division protein FtsA YP_003685062.1 COGs: COG1589 Cell division septal protein; InterPro IPR013685; KEGG: tth:TTC0722 cell division protein FtsQ; PFAM: Polypeptide-transport-associated domain protein FtsQ-type; SPTR: C1XU91 Cell division septal protein; PFAM: POTRA domain, FtsQ-type YP_003685063.1 COGs: COG0812 UDP-N-acetylmuramate dehydrogenase; InterProIPR016166:IPR016169:IPR003170:IPR006094:IPR 011601; KEGG: tth:TTC0721 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein; PRIAM: UDP-N-acetylmuramate dehydrogenase; SPTR: C1XU90 UDP-N-acetylmuramate dehydrogenase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD binding domain; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase YP_003685064.1 COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; InterProIPR016040:IPR013221:IPR004101:IPR005758:IPR 000713; KEGG: dge:Dgeo_1631 UDP-N-acetylmuramate--alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; SPTR: C1XU89 UDP-N-acetylmuramate--alanine ligase; TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: Mur ligase family, catalytic domain; Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramate--alanine ligase YP_003685065.1 COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; InterPro IPR007235:IPR004276; KEGG: tth:TTC0719 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain; PRIAM: Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; SPTR: C1XU88 UDP-N-acetylglucosamine--N-acetylmuramyl-(Pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: Glycosyltransferase family 28 C-terminal domain; Glycosyltransferase family 28 N-terminal domain; TIGRFAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase YP_003685066.1 COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: tth:TTC0718 cell cycle protein FtsW; PFAM: cell cycle protein; SPTR: C1XU87 Bacterial cell division membrane protein; PFAM: Cell cycle protein YP_003685067.1 COGs: COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; InterPro IPR005762:IPR013221:IPR016040:IPR004101; KEGG: ttj:TTHA1082 UDP-N-acetylmuramoylalanine--D-glutamiate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: C1XU86 UDP-N-acetylmuramoylalanine--D-glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_003685068.1 COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR018480:IPR018481; KEGG: ttj:TTHA1081 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; PRIAM:Phospho-N-acetylmuramoyl-pentapeptide-transfe rase; SPTR: C1XU85 Phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase family 4; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase YP_003685069.1 KEGG: ttj:TTHA1080 hypothetical protein; SPTR: C1XU84 Putative uncharacterized protein YP_003685070.1 COGs: COG0770 UDP-N-acetylmuramyl pentapeptide synthase; InterPro IPR013221:IPR004101:IPR005863:IPR000713; KEGG: ttj:TTHA1079 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- -D-alanyl- D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: C1XU83 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-d iaminopimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase family, catalytic domain; Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase YP_003685071.1 COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR001460:IPR012338; KEGG: ttj:TTHA1078 penicillin-binding protein; PFAM: penicillin-binding protein transpeptidase; PRIAM: Peptidoglycan glycosyltransferase; SPTR: C1XU82 Cell division protein FtsI/penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain YP_003685072.1 KEGG: ttj:TTHA1077 hypothetical protein; SPTR: C1XU80 Putative uncharacterized protein YP_003685073.1 COGs: COG0275 S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; InterPro IPR002903; KEGG: tth:TTC0711 MraW protein; PFAM: methyltransferase; SPTR: C1XU79 S-adenosyl-methyltransferase MraW; TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: MraW methylase family; TIGRFAM: S-adenosyl-methyltransferase MraW YP_003685074.1 COGs: COG2001 conserved hypothetical protein; InterPro IPR020603:IPR003444; KEGG: ttj:TTHA1075 cell division protein MraZ; PFAM: MraZ domain; SPTR: C1XU78 MraZ protein; TIGRFAM: MraZ protein; PFAM: MraZ protein; TIGRFAM: mraZ protein YP_003685075.1 COGs: COG0538 Isocitrate dehydrogenase; InterPro IPR001804:IPR004439:IPR019818; KEGG: rmr:Rmar_1401 isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; SPTR: C1XU73 Isocitrate dehydrogenase [NADP]; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, prokaryotic type YP_003685076.1 InterPro IPR003675; KEGG: ttj:TTHA0844 CAAX amino terminal protease family protein; PFAM: Abortive infection protein; SPTR: C1XU72 CAAX amino terminal protease family; PFAM: CAAX amino terminal protease family YP_003685077.1 InterPro IPR019887:IPR011008; KEGG: tth:TTC0493 AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type-like; SPTR: C1XU71 Transcriptional regulator, AsnC family; PFAM: AsnC family YP_003685078.1 COGs: COG1768 phosphohydrolase; InterPro IPR014578:IPR004843; KEGG: ttj:TTHA0847 putative phosphohydrolase; PFAM: metallophosphoesterase; SPTR: C1XU70 Predicted phosphohydrolase, COG1768; PFAM: Calcineurin-like phosphoesterase YP_003685079.1 KEGG: gsu:GSU1945 fibronectin type III domain-containing protein; SPTR: C1XU69 Putative uncharacterized protein; PFAM: Carbohydrate binding domain YP_003685080.1 InterPro IPR001434; KEGG: ttj:TTHA1874 hypothetical protein; PFAM: protein of unknown function DUF11; SPTR: C1XU68 Conserved repeat protein; TIGRFAM: conserved repeat domain protein; PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain YP_003685081.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XXD9 Integrase family protein; PFAM: Integrase core domain YP_003685082.1 KEGG: ttj:TTHA1874 hypothetical protein; SPTR: C1XU69 Putative uncharacterized protein YP_003685083.1 InterPro IPR002559:IPR012337; KEGG: cau:Caur_2446 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: C1XPT2 Transposase family protein; PFAM: Transposase DDE domain YP_003685084.1 KEGG: tth:TTC0496 recombination regulator RecX; SPTR: C1XYX9 Putative uncharacterized protein YP_003685085.1 COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: sco:SCP1.259 putative transposon transposase; PFAM: transposase mutator type; SPTR: C1XYX8 Transposase; PFAM: Transposase, Mutator family YP_003685086.1 KEGG: ttj:TTHA0848 recombination regulator RecX; SPTR: C1XYX7 Uncharacterized conserved protein; PFAM: RecX family YP_003685087.1 InterPro IPR002559; KEGG: tth:TT_P0158 hypothetical protein; PFAM: transposase IS4 family protein; SPTR: C1XPN1 Transposase family protein; PFAM: Transposase DDE domain YP_003685088.1 InterPro IPR005031; KEGG: ttj:TTHA0849 hypothetical protein; PFAM: cyclase/dehydrase; SPTR: C1XYX4 Oligoketide cyclase/lipid transport protein; PFAM: Polyketide cyclase / dehydrase and lipid transport YP_003685089.1 COGs: COG0215 Cysteinyl-tRNA synthetase; InterProIPR014729:IPR002308:IPR015803:IPR015273:IPR 009080; KEGG: ttj:TTHA0893 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR; PRIAM: Cysteine--tRNA ligase; SPTR: C1XYX3 Cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase YP_003685090.1 SPTR: C1XYX2 Putative uncharacterized protein YP_003685091.1 COGs: COG2738 Zn-dependent protease; InterPro IPR007395; KEGG: ttj:TTHA0896 Zn-dependent protease; PFAM: peptidase membrane zinc metallopeptidase putative; SPTR: C1XYX1 Predicted Zn-dependent protease; PFAM: Putative neutral zinc metallopeptidase YP_003685092.1 COGs: COG2359 conserved hypothetical protein; InterPro IPR007347; KEGG: ttj:TTHA0850 stage V sporulation protein S (SpoVS) related protein; PFAM: Stage V sporulation protein S; SPTR: B7A6C0 Stage V sporulation protein S; PFAM: Stage V sporulation protein S (SpoVS) YP_003685093.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XYW9 Integrase family protein; PFAM: Integrase core domain YP_003685094.1 COGs: COG0069 Glutamate synthase domain 2; InterProIPR006982:IPR002489:IPR002932:IPR017932:IPR 000583; KEGG: ttj:TTHA1468 glutamate synthase, large subunit; PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase; glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; PRIAM: Glutamate synthase (ferredoxin); SPTR: C1XYW8 Glutamate synthase (Ferredoxin); PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II YP_003685095.1 InterPro IPR012292:IPR009050; KEGG: ttj:TTHA1469 hypothetical protein; SPTR: C1XYW7 Putative uncharacterized protein YP_003685096.1 COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834:IPR006439:IPR006402; KEGG: sth:STH2896 HAD family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: C1XYW6 Haloacid dehalogenase superfamily enzyme, subfamily IA; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E YP_003685097.1 COGs: COG0632 Holliday junction resolvasome DNA-binding subunit; InterProIPR003583:IPR010994:IPR011114:IPR013849:IPR 012340:IPR016027:IPR000085; KEGG: ttj:TTHA0291 Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein; SPTR: C1XYW5 Holliday junction DNA helicase subunit RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: RuvA, C-terminal domain; RuvA N terminal domain; TIGRFAM: Holliday junction DNA helicase, RuvA subunit YP_003685098.1 COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753:IPR018376; KEGG: tth:TTC1697 enoyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase; SPTR: C1XYW4 Short chain enoyl-CoA hydratase; Enoyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase family YP_003685099.1 KEGG: sth:STH2644 hypothetical protein; SPTR: C1XYW3 Putative uncharacterized protein YP_003685100.1 COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR018376:IPR001753; KEGG: ara:Arad_0598 enoyl-CoA hydratase protein; PFAM: Enoyl-CoA hydratase/isomerase; SPTR: C1XYW2 Short chain enoyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase family YP_003685101.1 InterPro IPR011051:IPR013096:IPR014710; KEGG: gbm:Gbem_0317 Cupin 2 conserved barrel domain protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: C1XYW1 Cupin domain-containing protein; PFAM: Cupin domain YP_003685102.1 COGs: COG0527 Aspartokinase; InterProIPR001341:IPR001048:IPR018042:IPR002912:IPR 005260; KEGG: ttj:TTHA0534 aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; PRIAM: Aspartate kinase; SPTR: C1XYW0 Aspartokinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: Amino acid kinase family; ACT domain; TIGRFAM: aspartate kinase, monofunctional class; aspartate kinase YP_003685103.1 COGs: COG2236 phosphoribosyltransferase; InterPro IPR000836; KEGG: sti:Sthe_1633 phosphoribosyltransferase; PFAM: phosphoribosyltransferase; SPTR: C1XYV9 Predicted phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain YP_003685104.1 COGs: COG0039 Malate/lactate dehydrogenase; InterProIPR015955:IPR001252:IPR016040:IPR001236:IPR 010945:IPR001557; KEGG: dge:Dgeo_2161 malate dehydrogenase; PFAM: Lactate/malate dehydrogenase; PRIAM: Malate dehydrogenase; SPTR: C1XYV8 Malate dehydrogenase; TIGRFAM: malate dehydrogenase; PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain; TIGRFAM: malate dehydrogenase YP_003685105.1 COGs: COG2128 conserved hypothetical protein; InterPro IPR004675:IPR003779:IPR010195; KEGG: ddr:Deide_13030 hypothetical protein; PFAM: Carboxymuconolactone decarboxylase; SPTR: C1XYV7 Alkylhydroperoxidase AhpD family core domain; TIGRFAM: uncharacterized peroxidase-related enzyme; alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase family; TIGRFAM: uncharacterized peroxidase-related enzyme; alkylhydroperoxidase AhpD family core domain YP_003685106.1 COGs: COG2185 Methylmalonyl-CoA mutase C-terminal domain/subunit (cobalamin-binding); InterPro IPR006158:IPR006159; KEGG: ttj:TTHA1038 methylmalonyl-CoA mutase, alpha subunit, chain B; PFAM: cobalamin B12-binding domain protein; SPTR: C1XYV6 Methylmalonyl-CoA mutase family protein; PFAM: B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase C-terminal domain YP_003685107.1 COGs: COG4099 peptidase; InterPro IPR003140; KEGG: rmr:Rmar_0409 phospholipase/carboxylesterase; PFAM: phospholipase/Carboxylesterase; SPTR: C1XYV5 Predicted peptidase; PFAM: Phospholipase/Carboxylesterase YP_003685108.1 COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: sco:SCP1.259 putative transposon transposase; PFAM: transposase mutator type; SPTR: C1XP69 Transposase; PFAM: Transposase, Mutator family YP_003685109.1 COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; KEGG: reu:Reut_A3458 phenylacetic acid degradation-related protein; SPTR: C1XYV2 Putative uncharacterized protein; PFAM: Thioesterase superfamily YP_003685110.1 COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR014348:IPR006099:IPR006098:IPR016176; KEGG: tth:TTC0677 methylmalonyl-CoA mutase large subunit; PFAM: methylmalonyl-CoA mutase; PRIAM: Methylmalonyl-CoA mutase; SPTR: C1XYV1 Methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: Methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain YP_003685111.1 COGs: COG1381 Recombinational DNA repair protein (RecF pathway); KEGG: ttj:TTHA0623 DNA repair protein RecO; SPTR: C1XYV0 Recombinational DNA repair protein (RecF pathway); PFAM: Recombination protein O C terminal; Recombination protein O N terminal; TIGRFAM: DNA repair protein RecO YP_003685112.1 KEGG: ttj:TTHA0624 hypothetical protein; SPTR: C1XYU9 Putative uncharacterized protein YP_003685113.1 COGs: COG1331 Highly conserved protein containing a thioredoxin domain; InterPro IPR008928:IPR012336:IPR004879:IPR012335; KEGG: tth:TTC0622 hypothetical protein; PFAM: protein of unknown function DUF255; SPTR: C1XYU8 Highly conserved protein containing a thioredoxin domain; PFAM: Protein of unknown function, DUF255 YP_003685114.1 COGs: COG1692 conserved hypothetical protein; InterPro IPR004843; KEGG: ttj:TTHA0625 hypothetical protein; PFAM: metallophosphoesterase; SPTR: C1XYU7 Uncharacterized conserved protein, COG1692; TIGRFAM: conserved hypothetical protein TIGR00282 YP_003685115.1 KEGG: BCAR1; breast cancer anti-estrogen resistance 1; K05726 breast cancer anti-estrogen resistance 1; SPTR: C1XYU6 Putative uncharacterized protein YP_003685116.1 COGs: COG0405 Gamma-glutamyltransferase; InterPro IPR000101; KEGG: cyc:PCC7424_3089 gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; PRIAM: Gamma-glutamyltransferase; SPTR: C1XYU5 Gamma-glutamyltransferase 2; PFAM: Gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltranspeptidase YP_003685117.1 COGs: COG3360 conserved hypothetical protein; InterPro IPR009923; KEGG: ttj:TTHA1431 hypothetical protein; PFAM: protein of unknown function DUF1458; SPTR: C1XYU4 Uncharacterized conserved protein; PFAM: Protein of unknown function (DUF1458) YP_003685118.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001279; KEGG: ttj:TTHA1429 metallo-beta-lactamase family protein; SMART: beta-lactamase domain protein; SPTR: C1XYU3 Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily YP_003685119.1 InterPro IPR002559; KEGG: tth:TT_P0158 hypothetical protein; PFAM: transposase IS4 family protein; SPTR: C1XPN1 Transposase family protein; PFAM: Transposase DDE domain YP_003685120.1 COGs: COG0504 CTP synthase (UTP-ammonia lyase); InterPro IPR000991:IPR017926:IPR017456:IPR004468; KEGG: tth:TTC1102 CTP synthetase; PFAM: CTP synthase-like; glutamine amidotransferase class-I; PRIAM: CTP synthase; SPTR: C1XYU0 CTP synthase; TIGRFAM: CTP synthase; PFAM: Glutamine amidotransferase class-I; CTP synthase N-terminus; TIGRFAM: CTP synthase YP_003685121.1 COGs: COG2607 ATPase (AAA+ superfamily); InterPro IPR008533; KEGG: ttj:TTHA1467 hypothetical protein; PFAM: protein of unknown function DUF815; SPTR: C1XYT9 Predicted ATPase (AAA+ superfamily); PFAM: Protein of unknown function (DUF815) YP_003685122.1 COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; InterPro IPR006675:IPR006674; KEGG: dra:DR_0719 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SPTR: C1XYT8 Uncharacterized domain HDIG-containing protein; TIGRFAM: metal dependent phophohydrolase; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG YP_003685123.1 COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: sco:SCP1.259 putative transposon transposase; PFAM: transposase mutator type; SPTR: C1XP69 Transposase; PFAM: Transposase, Mutator family YP_003685124.1 KEGG: hypothetical protein; SPTR: C1XYT3 Putative uncharacterized protein YP_003685125.1 COGs: COG1569 nucleic acid-binding protein contains PIN domain; InterPro IPR006596:IPR002850; KEGG: afo:Afer_1868 PilT protein domain protein; SMART: Nucleotide binding protein PINc; SPTR: C1XYT2 Putative uncharacterized protein; TIGRFAM: conserved hypothetical protein TIGR00305 YP_003685126.1 SPTR: C1XYT0 Putative uncharacterized protein YP_003685127.1 KEGG: tmz:Tmz1t_3805 transposase IS4 family protein; SPTR: C1XRV2 Putative uncharacterized protein; PFAM: Transposase DDE domain YP_003685128.1 COGs: COG1787 endonuclease distantly related to Holliday junction resolvase and Mrr-like restriction enzyme; InterPro IPR007560; KEGG: dra:DR_1877 hypothetical protein; PFAM: restriction endonuclease; SPTR: Q9RT88 Putative uncharacterized protein; PFAM: Restriction endonuclease YP_003685129.1 COGs: COG2932 transcriptional regulator protein; InterPro IPR015927:IPR019756:IPR019759:IPR011056; KEGG: dge:Dgeo_1366 putative prophage repressor; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: C1XYS4 Predicted transcriptional regulator, COG2932; PFAM: Peptidase S24-like YP_003685130.1 KEGG: aba:Acid345_3373 hypothetical protein; SPTR: Q1IL76 Putative uncharacterized protein YP_003685131.1 InterPro IPR010093:IPR000551:IPR009061; KEGG: adg:Adeg_0025 DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; SPTR: C1XYS3 DNA-binding protein, excisionase family; TIGRFAM: DNA binding domain protein, excisionase family; TIGRFAM: DNA binding domain, excisionase family YP_003685132.1 SPTR: C1XYS2 Putative uncharacterized protein YP_003685133.1 KEGG: hypothetical protein; SPTR: C1XYS1 Putative uncharacterized protein YP_003685134.1 KEGG: Pc21g20240; SPTR: C1XYS0 Putative uncharacterized protein YP_003685135.1 SPTR: C1XYR9 Putative uncharacterized protein YP_003685136.1 KEGG: cyt:cce_3896 apolipoprotein N-acyltransferase; SPTR: C1XYR8 Putative uncharacterized protein YP_003685137.1 KEGG: retrotransposon hot spot (RHS) protein; SPTR: C1XYR7 Putative uncharacterized protein YP_003685138.1 KEGG: mtb:TBMG_03793 hypothetical protein; SPTR: C1XYR6 Putative uncharacterized protein YP_003685139.1 KEGG: mmi:MMAR_4828 hypothetical protein; SPTR: C1XYR5 Putative uncharacterized protein YP_003685140.1 KEGG: kinetoplast-associated protein-like protein; SPTR: C1XYR4 Putative uncharacterized protein YP_003685141.1 KEGG: gvi:gvip472 DNA repair protein RadC; SPTR: C1XYR3 Putative uncharacterized protein YP_003685142.1 KEGG: mar:MAE_19500 hypothetical protein; SPTR: C1XYR2 Putative uncharacterized protein YP_003685143.1 KEGG: sro:Sros_7629 conserved hypothetical protein LmbE; SPTR: C1XYR1 Putative uncharacterized protein YP_003685144.1 KEGG: ecy:ECSE_1040 cytochrome d ubiquinol oxidase subunit I; SPTR: C1XYR0 Putative uncharacterized protein YP_003685145.1 KEGG: dsh:Dshi_2725 signal recognition particle-docking protein FtsY; SPTR: C1XYQ9 Putative uncharacterized protein YP_003685146.1 KEGG: sro:Sros_4484 PEP phosphonomutase; SPTR: C1XYQ8 Putative uncharacterized protein YP_003685147.1 COGs: COG4942 Membrane-bound metallopeptidase; InterPro IPR016047:IPR011055; KEGG: gym:GYMC10_5840 peptidase M23; PFAM: Peptidase M23; SPTR: C1XYQ7 Membrane-bound metallopeptidase; PFAM: Peptidase family M23 YP_003685148.1 KEGG: shn:Shewana3_0985 ferritin, Dps family protein; SPTR: C1XYQ6 Putative uncharacterized protein YP_003685149.1 KEGG: ara:Arad_4317 pantothenate kinase protein; SPTR: C8CHL1 ATPase YP_003685150.1 KEGG: rec:RHECIAT_CH0002206 putative sensory box/GGDEF family protein; SPTR: C1XTI9 Putative uncharacterized protein (Fragment) YP_003685151.1 KEGG: TPP2; TPP2 (TRIPEPTIDYL PEPTIDASE II); tripeptidyl-peptidase; SPTR: C1XTI8 Putative uncharacterized protein YP_003685152.1 KEGG: apt:APA01_20630 ExbB/TolQ/MotA; SPTR: C1XTI7 Putative uncharacterized protein YP_003685153.1 KEGG: Gm973; predicted gene 973; SPTR: C1XTI6 Putative uncharacterized protein YP_003685154.1 KEGG: bte:BTH_I3267 hypothetical protein; SPTR: C1XTI5 Putative uncharacterized protein YP_003685155.1 KEGG: LZTS1; leucine zipper, putative tumor suppressor 1; SPTR: C1XTI4 Putative uncharacterized protein YP_003685156.1 KEGG: permease of the major facilitator superfamily; SPTR: C1XTI3 Putative uncharacterized protein YP_003685157.1 KEGG: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; SPTR: C1XTI2 Putative uncharacterized protein YP_003685158.1 KEGG: hypothetical protein; SPTR: C1XTI1 Putative uncharacterized protein YP_003685159.1 KEGG: kko:Kkor_0774 transcriptional regulator, CadC; SPTR: C1XTI0 Putative uncharacterized protein YP_003685160.1 KEGG: cag:Cagg_1774 nicotinate-nucleotide pyrophosphorylase; SPTR: C1XTH9 Putative uncharacterized protein YP_003685161.1 KEGG: YALI0C22924p; SPTR: C1XTH8 Putative uncharacterized protein YP_003685162.1 KEGG: prw:PsycPRwf_1302 hypothetical protein; SPTR: C1XTH7 Putative uncharacterized protein YP_003685163.1 SPTR: Q859R6 Putative uncharacterized protein YP_003685164.1 KEGG: swi:Swit_3687 lytic transglycosylase, catalytic; SPTR: C1XTH6 Putative uncharacterized protein YP_003685165.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XTH5 Integrase family protein; PFAM: Integrase core domain YP_003685166.1 COGs: COG3195 conserved hypothetical protein; InterPro IPR017580:IPR018020; KEGG: sus:Acid_0358 hypothetical protein; PFAM: Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase; SPTR: C1XTH4 OHCU decarboxylase; TIGRFAM: OHCU decarboxylase; PFAM: OHCU decarboxylase; TIGRFAM: OHCU decarboxylase YP_003685167.1 COGs: COG3748 membrane protein; InterPro IPR009056:IPR010389; KEGG: pen:PSEEN1682 hypothetical protein; PFAM: protein of unknown function DUF989; SPTR: C1XTH3 Predicted membrane protein, COG3748; PFAM: Cytochrome c; Protein of unknown function (DUF989) YP_003685168.1 COGs: COG0622 phosphoesterase; InterPro IPR011152:IPR004843; KEGG: dge:Dgeo_0870 metallophosphoesterase; PFAM: metallophosphoesterase; SPTR: C1XTH2 Predicted phosphoesterase; PFAM: Calcineurin-like phosphoesterase YP_003685169.1 COGs: COG2351 Transthyretin-like protein; InterPro IPR000895:IPR014306; KEGG: oan:Oant_0695 hydroxyisourate hydrolase; PFAM: Transthyretin; SPTR: C1XTH1 Hydroxyisourate hydrolase; TIGRFAM: hydroxyisourate hydrolase; PFAM: HIUase/Transthyretin family; TIGRFAM: hydroxyisourate hydrolase YP_003685170.1 COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR011650:IPR010158:IPR002933; KEGG: dge:Dgeo_2610 allantoate amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; PRIAM: Allantoate deiminase; SPTR: C1XTH0 Amidase, hydantoinase/carbamoylase family; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: Peptidase family M20/M25/M40; TIGRFAM: amidase, hydantoinase/carbamoylase family YP_003685171.1 COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR017593:IPR002195:IPR006680:IPR011059; KEGG: dge:Dgeo_2609 allantoinase; PFAM: amidohydrolase; SPTR: C1XTG9 Allantoinase; TIGRFAM: allantoinase; PFAM: Amidohydrolase family; TIGRFAM: allantoinase; dihydroorotase, multifunctional complex type YP_003685172.1 COGs: COG3257 Uncharacterized protein possibly involved in glyoxylate utilization; InterPro IPR011051:IPR013096:IPR014710; KEGG: dge:Dgeo_2608 hypothetical protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: C1XTG8 Uncharacterized protein, possibly involved in glyoxylate utilization; PFAM: Cupin domain; TIGRFAM: putative allantoin catabolism protein YP_003685173.1 COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR010158:IPR002933:IPR011650; KEGG: sus:Acid_0364 amidase; PFAM: peptidase M20; peptidase dimerisation domain protein; PRIAM: N-carbamoyl-L-amino-acid hydrolase; SPTR: C1XTG7 Amidase, hydantoinase/carbamoylase family; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: Peptidase family M20/M25/M40; TIGRFAM: amidase, hydantoinase/carbamoylase family YP_003685174.1 COGs: COG4630 Xanthine dehydrogenase iron-sulfur cluster and FAD-binding subunit A; InterProIPR016166:IPR001041:IPR016167:IPR014307:IPR 016169:IPR002888:IPR012175:IPR005107:IPR002346:IPR006058:I PR012675; KEGG: dra:DR_A0177 xanthine dehydrogenase, N-terminal subunit; PFAM: molybdopterin dehydrogenase FAD-binding; [2Fe-2S]-binding domain protein; ferredoxin; CO dehydrogenase flavoprotein domain protein; SPTR: C1XTB0 Xanthine dehydrogenase, small subunit; TIGRFAM: xanthine dehydrogenase, small subunit; PFAM: 2Fe-2S iron-sulfur cluster binding domain; FAD binding domain in molybdopterin dehydrogenase; [2Fe-2S] binding domain; CO dehydrogenase flavoprotein C-terminal domain; TIGRFAM: xanthine dehydrogenase, small subunit YP_003685175.1 COGs: COG4631 Xanthine dehydrogenase molybdopterin-binding subunit B; InterPro IPR008274:IPR014309:IPR000674; KEGG: dge:Dgeo_2604 xanthine dehydrogenase; PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; PRIAM: Xanthine dehydrogenase; SPTR: C1XTA9 Xanthine dehydrogenase, molybdenum binding subunit apoprotein; TIGRFAM: xanthine dehydrogenase, molybdopterin binding subunit; PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; TIGRFAM: xanthine dehydrogenase, molybdopterin binding subunit YP_003685176.1 COGs: COG1975 Xanthine and CO dehydrogenase maturation factor XdhC/CoxF family; InterPro IPR014308:IPR003777; KEGG: dge:Dgeo_2605 hypothetical protein; PFAM: protein of unknown function DUF182; SPTR: C1XTA8 Molybdenum cofactor sulfurylase; TIGRFAM: xanthine dehydrogenase accessory protein XdhC; PFAM: XdhC and CoxI family; TIGRFAM: xanthine dehydrogenase accessory protein XdhC YP_003685177.1 COGs: COG3845 ABC-type uncharacterized transport systems ATPase components; InterPro IPR017871:IPR003593:IPR003439; KEGG: rrs:RoseRS_1317 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XTA7 Nucleoside ABC transporter ATP-binding protein; PFAM: ABC transporter YP_003685178.1 COGs: COG4603 ABC-type uncharacterized transport system permease component; InterPro IPR001851; KEGG: ttj:TTHA1303 sugar ABC transporter, permease protein; PFAM: inner-membrane translocator; SPTR: C1XTA6 Nucleoside ABC transporter membrane protein; PFAM: Branched-chain amino acid transport system / permease component YP_003685179.1 COGs: COG1079 ABC-type transport system permease component; InterPro IPR001851; KEGG: ttj:TTHA1302 sugar ABC transporter, permease protein; PFAM: inner-membrane translocator; SPTR: C1XTA5 Nucleoside ABC transporter membrane protein; PFAM: Branched-chain amino acid transport system / permease component YP_003685180.1 COGs: COG1744 Uncharacterized ABC-type transport system periplasmic component/surface lipoprotein; InterPro IPR003760; KEGG: ttj:TTHA1301 hypothetical protein; PFAM: basic membrane lipoprotein; SPTR: C1XTA4 Nucleoside-binding protein; PFAM: Basic membrane protein YP_003685181.1 COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; InterPro IPR017594:IPR014311:IPR006680:IPR011059; KEGG: dge:Dgeo_2606 guanine deaminase; PFAM: amidohydrolase; SPTR: C1XTA3 Guanine deaminase; TIGRFAM: guanine deaminase; PFAM: Amidohydrolase family; TIGRFAM: guanine deaminase YP_003685182.1 COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase; InterPro IPR015424:IPR005814:IPR015421; KEGG: tth:TTC0510 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; PRIAM: Acetylornithine transaminase; SPTR: C1XTA2 4-aminobutyrate aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: 4-aminobutyrate aminotransferase, prokaryotic type YP_003685183.1 KEGG: sti:Sthe_0077 hypothetical protein; SPTR: C1XTA1 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2568) YP_003685184.1 COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterProIPR016040:IPR013328:IPR006176:IPR006108:IPR 001753:IPR008927; KEGG: ttj:TTHA0890 putative 3-hydroxyacyl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; Enoyl-CoA hydratase/isomerase; SPTR: C1XTA0 3-hydroxyacyl-CoA dehydrogenase; PFAM: Enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YP_003685185.1 COGs: COG2442 conserved hypothetical protein; InterPro IPR007367; KEGG: cyh:Cyan8802_1913 protein of unknown function DUF433; PFAM: protein of unknown function DUF433; SPTR: C1XT99 Uncharacterized conserved protein; PFAM: Protein of unknown function (DUF433) YP_003685186.1 COGs: COG4634 conserved hypothetical protein; KEGG: npu:Npun_F6176 hypothetical protein; SPTR: C1XT98 Uncharacterized conserved protein YP_003685187.1 COGs: COG2755 Lysophospholipase L1 and related esterase; InterPro IPR001087:IPR013831:IPR013830; KEGG: bcg:BCG9842_B2877 hypothetical protein; PFAM: lipolytic protein G-D-S-L family; SPTR: C1XT97 Lysophospholipase L1-like esterase; PFAM: GDSL-like Lipase/Acylhydrolase YP_003685188.1 KEGG: acp:A2cp1_3579 hypothetical protein; SPTR: C1XT96 Putative uncharacterized protein YP_003685189.1 COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR016039:IPR016038:IPR002155; KEGG: ttj:TTHA0891 acetyl-CoA acetyltransferase; SPTR: C1XT95 3-ketoacyl-CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases YP_003685190.1 COGs: COG1393 Arsenate reductase and related protein glutaredoxin family; InterPro IPR006660:IPR012336:IPR012335; KEGG: ddr:Deide_18400 putative arsenate reductase; PFAM: arsenate reductase and related; SPTR: C1XT92 Glutaredoxin family protein, arsenate reductase; PFAM: ArsC family YP_003685191.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XZG1 Integrase family protein (Fragment); PFAM: Integrase core domain YP_003685192.1 COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR013786:IPR006091:IPR006089:IPR006090:IPR 009100:IPR013764:IPR006092:IPR009075; KEGG: ttj:TTHA0892 acyl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: C1XT90 Acyl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain YP_003685193.1 COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR000160; KEGG: pfs:PFLU0183 hypothetical protein; PFAM: GGDEF domain containing protein; PRIAM: Diguanylate kinase; SMART: GGDEF domain containing protein; SPTR: C1XT89 Diguanylate cyclase (GGDEF) domain-containing protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_003685194.1 COGs: COG0345 Pyrroline-5-carboxylate reductase; InterPro IPR000304:IPR004455:IPR016040; KEGG: ttj:TTHA0852 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; PRIAM: Pyrroline-5-carboxylate reductase; SPTR: C1XT88 Pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; TIGRFAM: pyrroline-5-carboxylate reductase YP_003685195.1 KEGG: tth:TTC0501 hypothetical protein; SPTR: C1XT87 Putative uncharacterized protein YP_003685196.1 COGs: COG1839 conserved hypothetical protein; InterPro IPR007153; KEGG: tth:TTC0726 hypothetical protein; PFAM: protein of unknown function DUF355; SPTR: C1XT86 Uncharacterized conserved protein; PFAM: Adenosine specific kinase YP_003685197.1 COGs: COG1225 Peroxiredoxin; InterPro IPR017936:IPR012336:IPR000866:IPR012335; KEGG: ttj:TTHA1300 bacterioferritin comigratory protein, thiol peroxidase, putative; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: C1XT85 Peroxiredoxin; PFAM: AhpC/TSA family YP_003685198.1 COGs: COG0120 Ribose 5-phosphate isomerase; InterPro IPR004788; KEGG: tth:TTC0932 ribose-5-phosphate isomerase A; PFAM: Ribose 5-phosphate isomerase; PRIAM: Ribose-5-phosphate isomerase; SPTR: C1XT84 Ribose-5-phosphate isomerase; TIGRFAM: ribose 5-phosphate isomerase; PFAM: Ribose 5-phosphate isomerase A (phosphoriboisomerase A); TIGRFAM: ribose 5-phosphate isomerase YP_003685199.1 COGs: COG0143 Methionyl-tRNA synthetase; InterProIPR002547:IPR014729:IPR012340:IPR002304:IPR 004495:IPR015413:IPR014758:IPR016027:IPR009080; KEGG: dge:Dgeo_0724 methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); t-RNA-binding domain protein; SPTR: C1XT82 Methionyl-tRNA synthetase; TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetases class I (M); Putative tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain; methionyl-tRNA synthetase YP_003685200.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XT81 Integrase family protein; PFAM: Integrase core domain YP_003685201.1 COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209:IPR010259:IPR009020; KEGG: kko:Kkor_1769 peptidase S8 and S53 subtilisin kexin sedolisin; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; proteinase inhibitor I9 subtilisin propeptide; SPTR: C1XT80 Subtilisin-like serine protease; PFAM: Peptidase inhibitor I9; Subtilase family YP_003685202.1 KEGG: cyt:cce_4711 hypothetical protein; SPTR: C1XWH5 Putative uncharacterized protein YP_003685203.1 InterPro IPR009057; KEGG: cyp:PCC8801_0371 hypothetical protein; SPTR: C1XQA1 Putative uncharacterized protein YP_003685204.1 COGs: COG2719 conserved hypothetical protein; InterPro IPR007390; KEGG: tth:TTC0489 stage V sporulation protein R; PFAM: SpoVR family protein; SPTR: C1XT77 Uncharacterized conserved protein; PFAM: SpoVR like protein YP_003685205.1 COGs: COG2718 conserved hypothetical protein; InterPro IPR006698:IPR002035; KEGG: ttj:TTHA0842 hypothetical protein; PFAM: protein of unknown function DUF444; SPTR: C1XT76 Uncharacterized conserved protein; PFAM: Protein of unknown function (DUF444) YP_003685206.1 COGs: COG2766 Putative Ser protein kinase; InterPro IPR013153:IPR010650; KEGG: ttj:TTHA0843 serine protein kinase; PFAM: PrkA AAA domain protein; PrkA serine kinase; SMART: PrkA AAA domain protein; SPTR: C1XT75 Putative Ser protein kinase; PFAM: PrkA AAA domain; PrkA serine protein kinase C-terminal domain YP_003685207.1 COGs: COG4401 Chorismate mutase; InterPro IPR008243:IPR013813; KEGG: ttj:TTHA0868 chorismate mutase; PFAM: Chorismate mutase of the AroH class; SPTR: C1XT74 Chorismate mutase; TIGRFAM: chorismate mutase; PFAM: Chorismate mutase type I; TIGRFAM: monofunctional chorismate mutase, gram positive type, clade 1 YP_003685208.1 COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: ttj:TTHA0869 LmbE-related protein; PFAM: LmbE family protein; SPTR: C1XJP3 Uncharacterized LmbE-like protein; PFAM: GlcNAc-PI de-N-acetylase YP_003685209.1 COGs: COG0038 Chloride channel protein EriC; InterPro IPR014743:IPR001807; KEGG: tth:TTC0516 hypothetical protein; PFAM: Cl- channel voltage-gated family protein; SPTR: C1XT72 Chloride channel protein EriC; PFAM: Voltage gated chloride channel YP_003685210.1 COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; InterPro IPR006680; KEGG: tth:TTC0517 chlorohydrolase; PFAM: amidohydrolase; SPTR: C1XT71 Cytosine deaminase-like metal-dependent hydrolase; PFAM: Amidohydrolase family YP_003685211.1 COGs: COG3375 conserved hypothetical protein; InterPro IPR000182:IPR016181; KEGG: ttj:TTHA0873 hypothetical protein; SPTR: C1XT70 Uncharacterized conserved protein YP_003685212.1 COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341:IPR013342:IPR010197; KEGG: tth:TTC0519 N-acylamino acid racemase; PFAM: Mandelate racemase/muconate lactonizing protein; SPTR: C1XT69 O-succinylbenzoate synthase; TIGRFAM: o-succinylbenzoic acid (OSB) synthetase; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; TIGRFAM: o-succinylbenzoic acid (OSB) synthetase YP_003685213.1 COGs: COG1540 conserved hypothetical protein; InterPro IPR005501; KEGG: tth:TT_P0137 LamB/YcsF family protein; PFAM: LamB/YcsF family protein; SPTR: C1XT68 Uncharacterized lactam utilization protein B-like protein; PFAM: LamB/YcsF family YP_003685214.1 COGs: COG1984 Allophanate hydrolase subunit 2; InterPro IPR003833:IPR010016:IPR003778; KEGG: tth:TTC0624 UreA carboxylase/allophanate hydrolase; PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; SPTR: C1XT67 Putative uncharacterized protein; PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; TIGRFAM: conserved hypothetical protein TIGR00370; biotin-dependent carboxylase uncharacterized domain YP_003685215.1 COGs: COG0172 Seryl-tRNA synthetase; InterProIPR002317:IPR002314:IPR015866:IPR018156:IPR 006195:IPR010978; KEGG: tth:TTC0520 seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like; PRIAM: Serine--tRNA ligase; SPTR: C1XT66 Seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: Seryl-tRNA synthetase N-terminal domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: seryl-tRNA synthetase YP_003685216.1 COGs: COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; InterPro IPR003837; KEGG: dge:Dgeo_0933 aspartyl/glutamyl-tRNA amidotransferase subunit C; PFAM: Glu-tRNAGln amidotransferase C subunit; SPTR: C1XT65 Glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit YP_003685217.1 COGs: COG0076 Glutamate decarboxylase and related PLP-dependent protein; InterProIPR015424:IPR015422:IPR002129:IPR010977:IPR 015421; KEGG: chl:Chy400_3078 aromatic-L-amino-acid decarboxylase; PFAM: Pyridoxal-dependent decarboxylase; SPTR: C1XT64 PLP-dependent enzyme, glutamate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase conserved domain YP_003685218.1 COGs: COG4121 conserved hypothetical protein; InterPro IPR008471; KEGG: ttj:TTHA0878 hypothetical protein; PFAM: protein of unknown function DUF752; SPTR: C1XJQ1 Uncharacterized conserved protein; PFAM: Protein of unknown function (DUF752) YP_003685219.1 COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509:IPR011330; KEGG: tth:TTC0524 hypothetical protein; PFAM: polysaccharide deacetylase; SPTR: C1XT20 Predicted xylanase/chitin deacetylase; PFAM: Polysaccharide deacetylase YP_003685220.1 InterPro IPR011701:IPR016196; KEGG: tth:TTC0525 hypothetical protein; PFAM: major facilitator superfamily MFS_1; SPTR: C1XT19 Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily YP_003685221.1 COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: ttj:TTHA0881 glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: C1XT18 Glycosyl transferase; PFAM: Glycosyl transferase family 2 YP_003685222.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: ttj:TTHA0882 glycosyltransferase; PFAM: glycosyl transferase group 1; SPTR: C1XT17 Glycosyltransferase; PFAM: Glycosyl transferases group 1 YP_003685223.1 COGs: COG0133 Tryptophan synthase beta chain; InterPro IPR001926:IPR006653:IPR006654; KEGG: ttj:TTHA1095 tryptophan synthase subunit beta; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: C1XT16 Tryptophan synthase, beta chain; TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: tryptophan synthase, beta subunit YP_003685224.1 COGs: COG0159 Tryptophan synthase alpha chain; InterPro IPR018204:IPR002028:IPR013785:IPR011060; KEGG: ttj:TTHA1094 tryptophan synthase subunit alpha; PFAM: tryptophan synthase alpha chain; PRIAM: Tryptophan synthase; SPTR: C1XT15 Tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: Tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, alpha subunit YP_003685225.1 COGs: COG0863 DNA modification methylase; InterPro IPR002941:IPR002295:IPR002052; KEGG: hau:Haur_4064 site-specific DNA-methyltransferase (adenine-specific); PFAM: DNA methylase N-4/N-6 domain protein; SPTR: C1XT14 DNA modification methylase; PFAM: DNA methylase YP_003685226.1 InterPro IPR001279; KEGG: dge:Dgeo_1029 beta-lactamase-like protein; SMART: beta-lactamase domain protein; SPTR: C1XT13 Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily YP_003685227.1 COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR001789:IPR011006; KEGG: dra:DR_A0350 response regulator PilH, putative; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: C1XT12 Response regulator containing a CheY-like receiver domain and a GGDEF domain; PFAM: Response regulator receiver domain YP_003685228.1 COGs: COG0835 Chemotaxis signal transduction protein; InterPro IPR002545; KEGG: cyh:Cyan8802_0793 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein; SPTR: C1XT11 Chemotaxis signal transduction protein; PFAM: CheW-like domain YP_003685229.1 SPTR: C1XT10 Putative uncharacterized protein YP_003685230.1 COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR003660:IPR004089; KEGG: dra:DR_A0353 methyl-accepting chemotaxis-related protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SPTR: C1XT09 Methyl-accepting chemotaxis protein; PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_003685231.1 COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR003660:IPR004089; KEGG: dra:DR_A0353 methyl-accepting chemotaxis-related protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SPTR: C1XT08 Methyl-accepting chemotaxis protein; PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_003685232.1 COGs: COG0643 Chemotaxis protein histidine kinase and related kinase; InterProIPR008207:IPR003594:IPR002545:IPR001789:IPR 005467:IPR004105:IPR004358:IPR011006:IPR009082; KEGG: dra:DR_A0355 CheA-related protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; CheW domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; Hpt domain protein; CheW domain protein; SPTR: C1XT07 Chemotaxis protein histidine kinase-like protein; PFAM: CheW-like domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; Signal transducing histidine kinase, homodimeric domain; Hpt domain YP_003685233.1 InterPro IPR011006; KEGG: gme:Gmet_0762 response regulator receiver domain-containing protein; SPTR: C1XT06 Putative uncharacterized protein YP_003685234.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR004942:IPR011006; KEGG: dra:DR_A0357 response regulator; PFAM: response regulator receiver; Roadblock/LC7 family protein; SMART: response regulator receiver; SPTR: C1XT05 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; PFAM: Response regulator receiver domain YP_003685235.1 COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterProIPR011966:IPR016161:IPR015590:IPR016162:IPR 002539; KEGG: dge:Dgeo_1913 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; PFAM: MaoC domain protein dehydratase; Aldehyde Dehydrogenase; SPTR: C1XT04 Phenylacetic acid degradation protein paaN; TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: MaoC like domain; Aldehyde dehydrogenase family; TIGRFAM: phenylacetic acid degradation protein paaN YP_003685236.1 COGs: COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit; InterPro IPR009014:IPR005476:IPR005475:IPR015941; KEGG: ttj:TTHA0938 pyruvate dehydrogenase E1 component, beta subunit; PFAM: Transketolase central region; Transketolase domain protein; SMART: Transketolase central region; SPTR: C1XT03 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain YP_003685237.1 COGs: COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type alpha subunit; InterPro IPR017596:IPR001017; KEGG: tth:TTC0569 pyruvate decarboxylase alpha subunit-like protein; PFAM: dehydrogenase E1 component; PRIAM: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring); SPTR: C1XT02 Pyruvate dehydrogenase E1 component, alpha subunit; TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit; PFAM: Dehydrogenase E1 component; TIGRFAM: pyruvate dehydrogenase E1 component, alpha subunit YP_003685238.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XT01 Integrase family protein; PFAM: Integrase core domain YP_003685239.1 COGs: COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); InterPro IPR005215:IPR008881:IPR008880; KEGG: ttj:TTHA0614 trigger factor; PFAM: trigger factor domain; trigger factor domain protein; SPTR: C1XSZ9 Trigger factor; TIGRFAM: trigger factor; PFAM: Bacterial trigger factor protein (TF); Bacterial trigger factor protein (TF) C-terminus; TIGRFAM: trigger factor YP_003685240.1 COGs: COG0740 Protease subunit of ATP-dependent Clp protease; InterPro IPR001907:IPR018215; KEGG: ttj:TTHA0615 ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP; PRIAM: Endopeptidase Clp; SPTR: C1XSZ8 ATP-dependent Clp protease proteolytic subunit; PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP YP_003685241.1 COGs: COG1219 ATP-dependent protease Clp ATPase subunit; InterProIPR003593:IPR004487:IPR010603:IPR013093:IPR 019489; KEGG: ttj:TTHA0616 ATP-dependent protease ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; zinc finger C4 domain protein; Clp ATPase-like; SMART: AAA ATPase; SPTR: C1XSZ7 ATP-dependent Clp protease ATP-binding subunit ClpX; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ClpX C4-type zinc finger; TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX) YP_003685242.1 COGs: COG1651 Protein-disulfide isomerase; InterPro IPR017936:IPR001853:IPR012336:IPR012335; KEGG: ttj:TTHA0823 hypothetical protein; PFAM: DSBA oxidoreductase; SPTR: C1XSZ6 Protein-disulfide isomerase; PFAM: DSBA-like thioredoxin domain YP_003685243.1 COGs: COG0421 Spermidine synthase; InterPro IPR001045; KEGG: ttj:TTHA0824 spermidine synthase; PFAM: Spermine synthase; SPTR: C1XSZ5 Agmatine aminopropyltransferase; PFAM: Spermine/spermidine synthase; TIGRFAM: spermidine synthase YP_003685244.1 InterPro IPR016067:IPR003826; KEGG: ttj:TTHA0825 S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase related; SPTR: C1XSZ4 Adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase YP_003685245.1 KEGG: ttj:TTHA1136 hypothetical protein; SPTR: C1XSZ3 Putative uncharacterized protein YP_003685246.1 COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR002543:IPR003593:IPR018541; KEGG: ttj:TTHA0826 cell division protein FtsK; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: DNA translocase ftsK gamma; AAA ATPase; SPTR: C1XSZ2 DNA segregation ATPase, FtsK/SpoIIIE family; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family YP_003685247.1 InterPro IPR005632; KEGG: ttj:TTHA0827 outer membrane protein, OmpH-like; PFAM: outer membrane chaperone Skp (OmpH); SPTR: C1XSZ1 Outer membrane protein; PFAM: Outer membrane protein (OmpH-like) YP_003685248.1 InterPro IPR005632; KEGG: tth:TTC0475 putative cationic outer membrane protein OmpH; PFAM: outer membrane chaperone Skp (OmpH); SPTR: C1XSZ0 Outer membrane protein; PFAM: Outer membrane protein (OmpH-like) YP_003685249.1 KEGG: ttj:TTHA0828 hypothetical protein; SPTR: C1XSY9 Putative uncharacterized protein YP_003685250.1 COGs: COG3238 conserved hypothetical protein; InterPro IPR006750; KEGG: ttj:TTHB243 hypothetical protein; PFAM: protein of unknown function DUF606; SPTR: C1XSY8 Uncharacterized conserved protein; PFAM: Protein of unknown function, DUF606 YP_003685251.1 COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269; KEGG: dar:Daro_0093 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: C1XSY7 Putative uncharacterized protein; PFAM: Possible lysine decarboxylase; TIGRFAM: conserved hypothetical protein, DprA/Smf-related, family 1; conserved hypothetical protein, DprA/Smf-related, family 2 YP_003685252.1 COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR011650:IPR010158:IPR002933; KEGG: rxy:Rxyl_0221 amidase, hydantoinase/carbamoylase; PFAM: peptidase M20; PRIAM: N-carbamoyl-L-amino-acid hydrolase; SPTR: C1XSY6 Amidase, hydantoinase/carbamoylase family; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: Peptidase family M20/M25/M40; TIGRFAM: amidase, hydantoinase/carbamoylase family YP_003685253.1 InterPro IPR002197:IPR012914:IPR009057; KEGG: bbe:BBR47_32470 putative transcriptional regulator; PFAM: purine catabolism PurC domain protein; helix-turn-helix Fis-type; SPTR: C1XSY4 Transcriptional regulator, Fis family; PFAM: Purine catabolism regulatory protein-like family; Bacterial regulatory protein, Fis family YP_003685254.1 COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase; InterPro IPR015424:IPR005814:IPR015421; KEGG: cpi:Cpin_3443 aminotransferase class-III; PFAM: aminotransferase class-III; SPTR: C1XSY3 4-aminobutyrate aminotransferase family protein; PFAM: Aminotransferase class-III YP_003685255.1 COGs: COG2703 Hemerythrin; InterPro IPR012827:IPR012312; KEGG: ote:Oter_3062 hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; SPTR: C1XSY2 Hemerythrin-like metal-binding domain-containing protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain; TIGRFAM: hemerythrin-like metal-binding domain YP_003685256.1 COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterProIPR010061:IPR016161:IPR015590:IPR016160:IPR 016162; KEGG: sus:Acid_0680 methylmalonate-semialdehyde dehydrogenase [acylating]; PFAM: Aldehyde Dehydrogenase; SPTR: C1XSY1 Methylmalonate-semialdehyde dehydrogenase (Acylating); TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase family; TIGRFAM: methylmalonic acid semialdehyde dehydrogenase YP_003685257.1 InterPro IPR011990; KEGG: sro:Sros_3622 TPR repeat-containing protein; SPTR: C1XSY0 Putative uncharacterized protein YP_003685258.1 COGs: COG0288 Carbonic anhydrase; InterPro IPR015892:IPR001765; KEGG: xac:XAC1604 carbonic anhydrase; PFAM: carbonic anhydrase; PRIAM: Carbonate dehydratase; SPTR: C1XSX9 Carbonic anhydrase; PFAM: Carbonic anhydrase YP_003685259.1 KEGG: ddr:Deide_12771 conserved hypothetical protein, precursor; SPTR: C1XSX8 Putative uncharacterized protein YP_003685260.1 COGs: COG0167 Dihydroorotate dehydrogenase; InterPro IPR001295:IPR012135:IPR013785:IPR005719; KEGG: gvi:gvip424 dihydroorotate dehydrogenase 2; PFAM: dihydroorotate oxidase; PRIAM: Dihydroorotate oxidase; SPTR: C1XSX7 Dihydroorotate oxidase A; TIGRFAM: dihydroorotate dehydrogenase; PFAM: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase, subfamily 2 YP_003685261.1 COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR004722:IPR011059:IPR006680:IPR002195; KEGG: ttj:TTHA0781 dihydroorotase; PFAM: amidohydrolase; SPTR: C1XSX6 Dihydroorotase; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: Amidohydrolase family; TIGRFAM: dihydroorotase, multifunctional complex type YP_003685262.1 COGs: COG0540 Aspartate carbamoyltransferase catalytic chain; InterPro IPR006132:IPR006130:IPR006131:IPR002082; KEGG: ttj:TTHA0782 aspartate carbamoyltransferase catalytic subunit; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; SPTR: C1XSX5 Aspartate carbamoyltransferase; TIGRFAM: aspartate carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase YP_003685263.1 COGs: COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; InterPro IPR000836; KEGG: ttj:TTHA0783 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: Uracil phosphoribosyltransferase; SPTR: C1XSX4 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain YP_003685264.1 KEGG: hypothetical protein; SPTR: C1XSX3 Putative uncharacterized protein YP_003685265.1 COGs: COG0420 DNA repair exonuclease; InterPro IPR004593:IPR004843; KEGG: ttj:TTHA1289 exonuclease SbcD; PFAM: metallophosphoesterase; SPTR: C1XTG6 Exodeoxyribonuclease I subunit D; TIGRFAM: nuclease SbcCD, D subunit; PFAM: Calcineurin-like phosphoesterase; Type 5 capsule protein repressor C terminal; TIGRFAM: exonuclease SbcD YP_003685266.1 COGs: COG0419 ATPase involved in DNA repair; InterPro IPR003395; KEGG: ttj:TTHA1288 exonuclease SbcC; PFAM: SMC domain protein; SPTR: C1XTG5 ATPase involved in DNA repair; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: exonuclease SbcC YP_003685267.1 COGs: COG0728 membrane protein putative virulence factor; InterPro IPR004268; KEGG: tth:TTC0920 hypothetical protein; PFAM: virulence factor MVIN family protein; SPTR: C1XTG4 Integral membrane protein MviN; TIGRFAM: integral membrane protein MviN; PFAM: MviN-like protein; TIGRFAM: integral membrane protein MviN YP_003685268.1 COGs: COG0017 Aspartyl/asparaginyl-tRNA synthetase; InterProIPR004523:IPR016027:IPR006195:IPR004365:IPR 004364:IPR012340:IPR002312; KEGG: tth:TTC1087 aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; SPTR: C1XI38 Aspartate--tRNA(Asn) ligase; TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: aspartyl-tRNA synthetase, archaeal type YP_003685269.1 COGs: COG0084 Mg-dependent DNase; InterPro IPR015991:IPR001130:IPR012278:IPR018228; KEGG: ttj:TTHA1449 TatD family hydrolase; PFAM: TatD-related deoxyribonuclease; SPTR: C1XTG1 Hydrolase, TatD family; TIGRFAM: hydrolase, TatD family; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family YP_003685270.1 COGs: COG5621 secreted hydrolase; InterPro IPR018549; KEGG: ttj:TTHA0993 hypothetical protein; PFAM: Protein of unknown function DUF2006; SPTR: C1XTG0 Predicted secreted hydrolase; PFAM: Hydroxyneurosporene synthase (CrtC) YP_003685271.1 COGs: COG1755 conserved hypothetical protein; InterPro IPR007269; KEGG: ddr:Deide_14080 putative isoprenylcysteine carboxyl methyltransferase; PFAM: Isoprenylcysteine carboxyl methyltransferase; SPTR: C1XTF9 Uncharacterized conserved protein; PFAM: Isoprenylcysteine carboxyl methyltransferase (ICMT) family YP_003685272.1 COGs: COG3424 naringenin-chalcone synthase; InterProIPR016039:IPR001099:IPR012328:IPR011141:IPR 016038:IPR018088; KEGG: rxy:Rxyl_1084 chalcone and stilbene synthases-like protein; PFAM: chalcone and stilbene synthase domain protein; SPTR: C1XTF8 Predicted naringenin-chalcone synthase; PFAM: Chalcone and stilbene synthases, N-terminal domain; Chalcone and stilbene synthases, C-terminal domain YP_003685273.1 COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: rxy:Rxyl_1083 cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; SPTR: C1XTF7 Cob(II)yrinic acid a,c-diamide reductase; PFAM: Nitroreductase family YP_003685274.1 COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: sco:SCP1.259 putative transposon transposase; PFAM: transposase mutator type; SPTR: C1XP69 Transposase; PFAM: Transposase, Mutator family YP_003685275.1 InterPro IPR002114; KEGG: hypothetical protein; SPTR: C3YMU9 Putative uncharacterized protein YP_003685276.1 InterPro IPR015927:IPR011056:IPR001387; KEGG: dra:DR_A0074 hypothetical protein; SMART: helix-turn-helix domain protein; SPTR: C1XTF4 Predicted transcriptional regulator, COG2932 YP_003685277.1 InterPro IPR012337:IPR009057:IPR001584; KEGG: dra:DR_A0075 transposase, putative; PFAM: Integrase catalytic region; SPTR: C1XTF3 Integrase family protein; PFAM: Integrase core domain YP_003685278.1 COGs: COG2842 Uncharacterized ATPase putative transposase; KEGG: dra:DR_A0076 hypothetical protein; SPTR: C1XTF2 Uncharacterized ATPase, putative transposase YP_003685279.1 KEGG: dra:DR_A0077 hypothetical protein; SPTR: C1XTF1 Putative uncharacterized protein YP_003685280.1 KEGG: hypothetical protein, conserved ; K11547 kinetochore protein NDC80; SPTR: C1XTF0 Putative uncharacterized protein YP_003685281.1 KEGG: hla:Hlac_0718 PAS/PAC sensor signal transduction histidine kinase; SPTR: C1XTE9 Putative uncharacterized protein YP_003685282.1 KEGG: cya:CYA_0788 chaperone protein DnaJ; SPTR: C1XTE8 Putative uncharacterized protein YP_003685283.1 KEGG: svi:Svir_30300 hypothetical protein; SPTR: C1XTE7 Putative uncharacterized protein YP_003685284.1 KEGG: GG14936 gene product from transcript GG14936-RA; SPTR: C1XTE6 Putative uncharacterized protein YP_003685285.1 KEGG: ttu:TERTU_3795 hypothetical protein; SPTR: C1XTE5 Putative uncharacterized protein YP_003685286.1 KEGG: ele:Elen_3025 ErfK/YbiS/YcfS/YnhG family protein; SPTR: C1XTE4 Putative uncharacterized protein YP_003685287.1 KEGG: mmi:MMAR_2738 hypothetical protein; SPTR: C1XTE3 Putative uncharacterized protein YP_003685288.1 InterPro IPR005471; KEGG: tpe:Tpen_1358 transcriptional regulator, TrmB; PFAM: regulatory protein IclR; SPTR: C1XTE2 IclR-like transcriptional regulator; PFAM: IclR helix-turn-helix domain YP_003685289.1 KEGG: jde:Jden_2065 ABC transporter related; SPTR: C1XTE1 Putative uncharacterized protein YP_003685290.1 KEGG: bga:BGA05 chpAI protein, putative; SPTR: C1XTE0 Putative uncharacterized protein YP_003685291.1 KEGG: dra:DR_A0091 hypothetical protein; SPTR: C1XTD9 Putative uncharacterized protein YP_003685292.1 KEGG: mab:MAB_3176c hypothetical protein; SPTR: C1XTD8 Putative uncharacterized protein YP_003685293.1 KEGG: dra:DR_A0093 hypothetical protein; SPTR: C1XTD7 Putative uncharacterized protein YP_003685294.1 COGs: COG4373 Mu-like prophage FluMu protein gp28; InterPro IPR004921; KEGG: xau:Xaut_4503 hypothetical protein; PFAM: protein of unknown function DUF264; SPTR: C1XTD6 Mu-like prophage FluMu protein gp28; PFAM: Terminase-like family YP_003685295.1 COGs: COG4383 Mu-like prophage protein gp29; InterPro IPR009279; KEGG: sat:SYN_02303 Mu-like prophage FluMu protein GP29; PFAM: protein of unknown function DUF935; SPTR: C1XTD5 Mu-like prophage protein gp29; PFAM: Protein of unknown function (DUF935) YP_003685296.1 InterPro IPR006528; KEGG: dvm:DvMF_1285 phage head morphogenesis protein, SPP1 gp7 family; PFAM: putative head morphogenesis protein SPP1 gp7; SPTR: C1XTD4 Phage Mu protein F like protein; PFAM: Phage Mu protein F like protein; TIGRFAM: phage putative head morphogenesis protein, SPP1 gp7 family YP_003685297.1 COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR001959:IPR010095; KEGG: dge:Dgeo_2272 putative transposase, IS891/IS1136/IS1341; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; SPTR: C1XTD3 Transposase, IS605 OrfB family, central region; TIGRFAM: transposase, IS605 OrfB family; PFAM: Helix-turn-helix domain; Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region YP_003685298.1 COGs: COG1943 Transposase and inactivated derivatives; InterPro IPR002686; KEGG: dge:Dgeo_2273 transposase IS200-like protein; PFAM: transposase IS200-family protein; SPTR: C1XYM9 Transposase; PFAM: Transposase IS200 like YP_003685299.1 KEGG: uue:UUR10_0539 hypothetical protein; SPTR: C1XTD1 Putative uncharacterized protein YP_003685300.1 KEGG: dde:Dde_3379 phage virion morphogenesis (putative tail completion) protein; SPTR: C1XTD0 Putative uncharacterized protein; PFAM: Phage virion morphogenesis family; TIGRFAM: phage virion morphogenesis (putative tail completion) protein YP_003685301.1 KEGG: xac:XAC4335 exodeoxyribonuclease V alpha chain; SPTR: C1XTC9 Putative uncharacterized protein YP_003685302.1 KEGG: gem:GM21_3663 hypothetical protein; SPTR: C1XTC8 Putative uncharacterized protein YP_003685303.1 KEGG: lil:LA0205 hypothetical protein; SPTR: C1XTC7 Putative uncharacterized protein YP_003685304.1 KEGG: pmx:PERMA_1820 hypothetical protein; SPTR: C1XTC6 Putative uncharacterized protein YP_003685305.1 KEGG: similar to nesprin-1; SPTR: C1XTC5 Putative uncharacterized protein YP_003685306.1 KEGG: hypothetical protein; SPTR: C1XTC4 Putative uncharacterized protein YP_003685307.1 KEGG: bps:BPSS1087 bacteriophage membrane protein; SPTR: C1XTC3 Putative uncharacterized protein YP_003685308.1 KEGG: similar to C-type lectin, selectin-like (AGAP000929-PA); SPTR: C1XTC2 Putative uncharacterized protein YP_003685309.1 KEGG: mbt:JTY_3514 putative integral membrane protein; SPTR: C1XTC1 Putative uncharacterized protein YP_003685310.1 KEGG: sro:Sros_1891 ribokinase-like domain-containing protein; SPTR: C1XTC0 Putative uncharacterized protein YP_003685311.1 KEGG: pmx:PERMA_1808 hypothetical protein; SPTR: C1XTB9 Putative uncharacterized protein YP_003685312.1 COGs: COG3299 Uncharacterized homolog of phage Mu protein gp47; InterPro IPR006949; KEGG: dvu:DVU1102 baseplate assembly protein, putative; PFAM: Baseplate J family protein; SPTR: C1XTB8 Uncharacterized phage Mu protein gp47-like protein, COG3299; PFAM: Baseplate J-like protein YP_003685313.1 KEGG: pmx:PERMA_1821 hypothetical protein; SPTR: C1XTB7 Putative uncharacterized protein; PFAM: Phage tail protein (Tail_P2_I) YP_003685314.1 KEGG: bba:Bd3267 putative cell wall surface anchor family protein; SPTR: C1XTB6 Putative uncharacterized protein YP_003685315.1 KEGG: hypothetical protein; SPTR: C1XTB5 Putative uncharacterized protein YP_003685316.1 KEGG: sus:Acid_7323 Ig domain-containing protein; SPTR: C1GT89 Putative uncharacterized protein YP_003685317.1 InterPro IPR012337:IPR002559; KEGG: cau:Caur_2446 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: C1XPT2 Transposase family protein; PFAM: Transposase DDE domain YP_003685318.1 KEGG: hau:Haur_2757 hypothetical protein; SPTR: C1XTB2 Putative uncharacterized protein YP_003685319.1 COGs: COG1109 Phosphomannomutase; InterProIPR016066:IPR005845:IPR005844:IPR016055:IPR 005846:IPR005841:IPR005843; KEGG: dge:Dgeo_0352 phosphoglucomutase/phosphomannomutase alpha/beta/subunit; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; SPTR: C1XTB1 Phosphomannomutase; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YP_003685320.1 COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR014016:IPR014017:IPR000212; KEGG: ttj:TTHA1427 UvrD protein; PFAM: UvrD/REP helicase; SPTR: C1XT63 ATP-dependent DNA helicase, Rep family; PFAM: UvrD/REP helicase; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003685321.1 KEGG: bpy:Bphyt_6246 3-oxoacyl-(acyl-carrier-protein (ACP)) synthase III domain protein; SPTR: C1XT62 Putative uncharacterized protein YP_003685322.1 KEGG: ttj:TTHA1426 hypothetical protein; SPTR: C1XT61 Putative uncharacterized protein YP_003685323.1 COGs: COG0103 Ribosomal protein S9; InterPro IPR014721:IPR020568:IPR000754:IPR020574; KEGG: tth:TTC1100 30S ribosomal protein S9; PFAM: ribosomal protein S9; SPTR: C1XT60 30S ribosomal protein S9; PFAM: Ribosomal protein S9/S16 YP_003685324.1 COGs: COG0102 Ribosomal protein L13; InterPro IPR005823:IPR005822; KEGG: ttj:TTHA1465 50S ribosomal protein L13; PFAM: ribosomal protein L13; SPTR: C1XT59 LSU ribosomal protein L13P; TIGRFAM: ribosomal protein L13; PFAM: Ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type YP_003685325.1 COGs: COG2154 Pterin-4a-carbinolamine dehydratase; InterPro IPR001533; KEGG: scl:sce1698 putative pterin-4-alpha-carbinolamine dehydratase; PFAM: transcriptional coactivator/pterin dehydratase; SPTR: C1XT58 Pterin-4a-carbinolamine dehydratase; PFAM: Pterin 4 alpha carbinolamine dehydratase YP_003685326.1 COGs: COG0567 2-oxoglutarate dehydrogenase complex dehydrogenase (E1); InterPro IPR011603:IPR005475:IPR001017; KEGG: ttj:TTHA0289 2-oxoglutarate dehydrogenase E1 component; PFAM: Transketolase central region; dehydrogenase E1 component; PRIAM: Oxoglutarate dehydrogenase (succinyl-transferring); SMART: Transketolase central region; SPTR: C1XT57 2-oxoglutarate dehydrogenase E1 component; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: Dehydrogenase E1 component; Transketolase, pyrimidine binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component YP_003685327.1 COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterProIPR004167:IPR006255:IPR001078:IPR000089:IPR 003016:IPR011053; KEGG: tth:TTC1699 dihydrolipoamide succinyltransferase; PFAM: catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; biotin/lipoyl attachment domain-containing protein; SPTR: C1XT56 2-oxoglutarate dehydrogenase E2 component; TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) YP_003685328.1 COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterProIPR012999:IPR013027:IPR006258:IPR004099:IPR 000815:IPR001327:IPR016156; KEGG: tth:TTC1700 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SPTR: C1XT55 Dihydrolipoyl dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase YP_003685329.1 COGs: COG1488 Nicotinic acid phosphoribosyltransferase; InterPro IPR006405:IPR007229:IPR015977; KEGG: tth:TTC0252 nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; SPTR: C1XT54 Nicotinate phosphoribosyltransferase; TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase (NAPRTase) family; TIGRFAM: putative nicotinate phosphoribosyltransferase YP_003685330.1 COGs: COG1410 Methionine synthase I cobalamin-binding domain; InterProIPR011822:IPR003726:IPR004223:IPR011005:IPR 006158:IPR003759:IPR000489; KEGG: ttj:TTHA0618 5-methyltetrahydrofolate homocysteine S-methyltransferase; PFAM: homocysteine S-methyltransferase; dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; Vitamin B12 dependent methionine synthase activation region; SPTR: C1XT53 Methionine synthase (B12-dependent); TIGRFAM: methionine synthase; PFAM: Pterin binding enzyme; Vitamin B12 dependent methionine synthase, activation domain; B12 binding domain; Homocysteine S-methyltransferase; TIGRFAM: methylmalonyl-CoA mutase C-terminal domain; 5-methyltetrahydrofolate--homocysteine methyltransferase YP_003685331.1 COGs: COG1796 DNA polymerase IV (family X); InterProIPR003583:IPR016195:IPR010996:IPR003141:IPR 004013:IPR010994:IPR002008:IPR002054; KEGG: tth:TTC0785 DNA-dependent DNA polymerase beta chain; PFAM: PHP domain protein; SMART: DNA polymerase X; phosphoesterase PHP domain protein; Helix-hairpin-helix DNA-binding class 1; SPTR: C1XT52 DNA polymerase IV (Family X); PFAM: PHP domain YP_003685332.1 KEGG: aac:Aaci_0901 hypothetical protein; SPTR: C1XT51 Putative uncharacterized protein; PFAM: Methyltransferase domain YP_003685333.1 InterPro IPR016181:IPR000182; KEGG: afl:Aflv_1320 acetyltransferase (GNAT) family; PFAM: GCN5-related N-acetyltransferase; SPTR: C1XT50 Predicted acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_003685334.1 COGs: COG1283 Na+/phosphate symporter; InterPro IPR003841:IPR008170; KEGG: ttj:TTHB140 hypothetical protein; PFAM: PhoU family protein; Na+/Picotransporter; SPTR: C1XT49 Na+/phosphate symporter; PFAM: PhoU domain; Na+/Pi-cotransporter; TIGRFAM: Na/Pi-cotransporter YP_003685335.1 COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: ddr:Deide_1p00040 putative FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: C1XF90 Glycine/D-amino acid oxidase, deaminating; PFAM: FAD dependent oxidoreductase YP_003685336.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: dge:Dgeo_1806 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XT46 ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter YP_003685337.1 InterPro IPR013526:IPR000412:IPR013525; KEGG: dge:Dgeo_1805 ABC-2 type transporter; PFAM: ABC-2 type transporter; SPTR: C1XT45 ABC-type multidrug transport system, permease component; PFAM: ABC-2 type transporter YP_003685338.1 KEGG: tth:TTC0728 hypothetical protein; SPTR: C1XT44 Putative uncharacterized protein YP_003685339.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: tth:TTC1559 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XT43 ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter YP_003685340.1 COGs: COG1668 ABC-type Na+ efflux pump permease component; InterPro IPR013525; KEGG: ttj:TTHA1923 sodium ABC transporter, permease protein NatB; PFAM: ABC-2 type transporter; SPTR: C1XT42 ABC-type Na+ efflux pump, permease component; PFAM: ABC-2 type transporter YP_003685341.1 COGs: COG1060 Thiamine biosynthesis protein ThiH; InterPro IPR020050:IPR007197:IPR005244:IPR013785; KEGG: tth:TTC0727 biotin synthase/thiamine biosynthesis enzyme; PFAM: Radical SAM domain protein; SPTR: C1XT41 Putative uncharacterized protein; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM domain protein, CofH subfamily YP_003685342.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dge:Dgeo_1041 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: C1XT40 Glycosyl transferase; PFAM: Glycosyl transferase family 2 YP_003685343.1 COGs: COG0750 membrane-associated Zn-dependent protease 1; InterPro IPR001478:IPR008915:IPR004387; KEGG: ttj:TTHA0855 membrane-associated Zn-dependent protease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; SPTR: C1XT39 RIP metalloprotease RseP; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: Peptidase family M50; PDZ domain (Also known as DHR or GLGF); TIGRFAM: RIP metalloprotease RseP YP_003685344.1 COGs: COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro IPR003821:IPR016040:IPR013512:IPR013644; KEGG: ttj:TTHA0856 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein; PRIAM: 1-deoxy-D-xylulose-5-phosphate reductoisomerase; SPTR: C1XT38 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_003685345.1 COGs: COG0575 CDP-diglyceride synthetase; InterPro IPR000374; KEGG: ttj:TTHA0857 phosphatidate cytidylyltransferase; PFAM: phosphatidate cytidylyltransferase; SPTR: C1XT37 Phosphatidate cytidylyltransferase; PFAM: Cytidylyltransferase family YP_003685346.1 COGs: COG0233 Ribosome recycling factor; InterPro IPR002661; KEGG: ttj:TTHA0858 ribosome recycling factor; PFAM: ribosome recycling factor; SPTR: C1XT36 Ribosome recycling factor; TIGRFAM: ribosome recycling factor; PFAM: Ribosome recycling factor; TIGRFAM: ribosome recycling factor YP_003685347.1 COGs: COG0528 Uridylate kinase; InterPro IPR011817:IPR015963:IPR001048; KEGG: ttj:TTHA0859 uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; PRIAM: UMP kinase; SPTR: C1XT35 Uridylate kinase; TIGRFAM: uridylate kinase; PFAM: Amino acid kinase family; TIGRFAM: uridylate kinase YP_003685348.1 COGs: COG0264 Translation elongation factor Ts; InterProIPR014039:IPR018101:IPR000449:IPR009060:IPR 001816; KEGG: tth:TTC0508 elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; SPTR: C1XT34 Elongation factor Ts; TIGRFAM: translation elongation factor Ts; PFAM: Elongation factor TS; UBA/TS-N domain; TIGRFAM: translation elongation factor Ts YP_003685349.1 COGs: COG0052 Ribosomal protein S2; InterPro IPR018130:IPR001865:IPR005706; KEGG: ttj:TTHA0861 30S ribosomal protein S2; PFAM: ribosomal protein S2; SPTR: C1XT33 SSU ribosomal protein S2P; TIGRFAM: ribosomal protein S2; PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type YP_003685350.1 InterPro IPR002559; KEGG: tth:TT_P0158 hypothetical protein; PFAM: transposase IS4 family protein; SPTR: C1XPN1 Transposase family protein; PFAM: Transposase DDE domain YP_003685351.1 COGs: COG1597 Sphingosine kinase; InterPro IPR001206; KEGG: dra:DR_1363 hypothetical protein; PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region; SPTR: C1XT30 Sphingosine/diacylglycerol kinase-like enzyme; PFAM: Diacylglycerol kinase catalytic domain YP_003685352.1 COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: chl:Chy400_3893 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: C1XT29 Glycine/D-amino acid oxidase, deaminating; PFAM: FAD dependent oxidoreductase YP_003685353.1 COGs: COG0366 Glycosidase; InterPro IPR006047:IPR013781:IPR017853; KEGG: rca:Rcas_2077 alpha amylase catalytic region; PFAM: alpha amylase catalytic region; SPTR: C1XT28 Glycosidase; PFAM: Alpha amylase, catalytic domain YP_003685354.1 COGs: COG2309 Leucyl aminopeptidase (aminopeptidase T); InterPro IPR000787; KEGG: mno:Mnod_5302 peptidase M29 aminopeptidase II; PFAM: peptidase M29 aminopeptidase II; SPTR: C1XT27 Aminopeptidase T; PFAM: Thermophilic metalloprotease (M29) YP_003685355.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: ddr:Deide_09660 putative lipopolysaccharide biosynthesis protein (glycosyltranferase); PFAM: glycosyl transferase group 1; SPTR: C1XT26 Glycosyltransferase; PFAM: Glycosyl transferases group 1 YP_003685356.1 COGs: COG4370 conserved hypothetical protein; InterPro IPR019994; KEGG: dge:Dgeo_0563 hypothetical protein; SPTR: C1XT25 Uncharacterized conserved protein; TIGRFAM: conserved hypothetical protein; TIGRFAM: conserved hypothetical protein YP_003685357.1 COGs: COG1197 Transcription-repair coupling factor (superfamily II helicase); InterProIPR011545:IPR003711:IPR001650:IPR014021:IPR 005118:IPR014001; KEGG: ttj:TTHA0889 transcription-repair coupling factor; PFAM: transcription factor CarD; DEAD/DEAH box helicase domain protein; helicase domain protein; TRCF domain protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: C1XT24 Transcription-repair coupling factor (Superfamily II helicase); PFAM: Helicase conserved C-terminal domain; TRCF domain; CarD-like/TRCF domain; DEAD/DEAH box helicase; TIGRFAM: transcription-repair coupling factor (mfd) YP_003685358.1 InterPro IPR002559; KEGG: ddr:Deide_3p01971 putative transposase; PFAM: transposase IS4 family protein; SPTR: C1XT23 Transposase family protein YP_003685359.1 KEGG: tth:TTC1681 hypothetical protein; SPTR: C1XT22 Putative uncharacterized protein YP_003685360.1 KEGG: dra:DR_2593 hypothetical protein; SPTR: C1XT21 Putative uncharacterized protein YP_003685361.1 InterPro IPR012337:IPR009057:IPR001584; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XSX2 Integrase family protein; PFAM: Integrase core domain YP_003685362.1 COGs: COG3005 Nitrate/TMAO reductase membrane-bound tetraheme cytochrome c subunit; InterPro IPR017571:IPR005126; KEGG: ote:Oter_4607 cytochrome c nitrate reductase, small subunit; PFAM: NapC/NirT cytochrome c domain protein; SPTR: C1XSX1 Respiratory nitrite reductase specific menaquinol--cytochrome-c reductase (NrfH); TIGRFAM: cytochrome c nitrate reductase, small subunit; PFAM: NapC/NirT cytochrome c family, N-terminal region; TIGRFAM: cytochrome c nitrate reductase, small subunit YP_003685363.1 COGs: COG3303 Formate-dependent nitrite reductase periplasmic cytochrome c552 subunit; InterPro IPR011031:IPR003321:IPR001020; KEGG: ote:Oter_4608 nitrite reductase (cytochrome; ammonia-forming); PFAM: cytochrome c552; PRIAM: Nitrite reductase (cytochrome; ammonia-forming); SPTR: C1XSX0 Respiratory nitrite reductase (Cytochrome; ammonia-forming); PFAM: Cytochrome c552 YP_003685364.1 COGs: COG0282 Acetate kinase; InterPro IPR000890:IPR004372; KEGG: ddr:Deide_23220 putative acetate kinase (acetokinase, acetic kinase, phosphorylating, AK); PFAM: acetate and butyrate kinase; SPTR: C1XSW9 Acetate kinase; TIGRFAM: acetate kinase; PFAM: Acetokinase family; TIGRFAM: acetate kinase YP_003685365.1 KEGG: aba:Acid345_0930 sporulation protein and related proteins; SPTR: C1XSW7 Putative uncharacterized protein YP_003685366.1 InterPro IPR003010; KEGG: tth:TTC0234 hypothetical protein; SPTR: C1XSW6 Predicted amidohydrolase; PFAM: Carbon-nitrogen hydrolase YP_003685367.1 COGs: COG0760 Parvulin-like peptidyl-prolyl isomerase; InterPro IPR000297; KEGG: tth:TTC0233 peptidyl-prolyl cis-trans isomerase; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: C1XSW5 Parvulin-like peptidyl-prolyl isomerase; PFAM: PPIC-type PPIASE domain YP_003685368.1 COGs: COG1232 Protoporphyrinogen oxidase; InterPro IPR004572:IPR002937; KEGG: tth:TTC0230 protoporphyrinogen oxidase; PFAM: amine oxidase; PRIAM: Protoporphyrinogen oxidase; SPTR: C1XSW4 Protoporphyrinogen oxidase; TIGRFAM: protoporphyrinogen oxidase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: protoporphyrinogen oxidase YP_003685369.1 COGs: COG2021 Homoserine acetyltransferase; InterPro IPR006296:IPR000073:IPR008220; KEGG: ttj:TTHA0759 homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; PRIAM: Homoserine O-acetyltransferase; SPTR: C1XSW3 Homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; TIGRFAM: homoserine O-acetyltransferase YP_003685370.1 COGs: COG2873 O-acetylhomoserine sulfhydrylase; InterProIPR015422:IPR015424:IPR000277:IPR006235:IPR 015421; KEGG: ttj:TTHA0760 O-acetyl-L-homoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; PRIAM: O-acetylhomoserine aminocarboxypropyltransferase; SPTR: C1XSW2 O-acetylhomoserine sulfhydrolase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: OAH/OAS sulfhydrylase YP_003685371.1 InterPro IPR002559; KEGG: tth:TT_P0158 hypothetical protein; PFAM: transposase IS4 family protein; SPTR: C1XPN1 Transposase family protein; PFAM: Transposase DDE domain YP_003685372.1 InterPro IPR012337:IPR009057:IPR001584; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XWM1 Uncharacterized conserved protein (DUF2191)/integrase family protein; PFAM: Integrase core domain YP_003685373.1 COGs: COG1840 ABC-type Fe3+ transport system periplasmic component; InterPro IPR006059; KEGG: rde:RD1_1059 iron ABC transporter iron-binding protein, putative; PFAM: extracellular solute-binding protein family 1; SPTR: C1XZI7 ABC-type Fe3+ transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein YP_003685374.1 COGs: COG1178 ABC-type Fe3+ transport system permease component; InterPro IPR000515; KEGG: rec:RHECIAT_CH0002177 iron(III) ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XZI6 ABC-type Fe3+ transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_003685375.1 COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterProIPR008995:IPR003439:IPR015853:IPR013611:IPR 017871:IPR003593; KEGG: dda:Dd703_2487 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; SPTR: C1XZI5 ABC-type spermidine/putrescine transport system, ATPase component; PFAM: ABC transporter; TOBE domain YP_003685376.1 COGs: COG0679 permease; InterPro IPR004776; KEGG: ttj:TTHA0659 hypothetical protein; PFAM: Auxin Efflux Carrier; SPTR: C1XQV7 Predicted permease; PFAM: Membrane transport protein YP_003685377.1 KEGG: vsa:VSAL_I1383 riboflavin synthase subunit alpha; SPTR: C1XQV6 Putative uncharacterized protein YP_003685378.1 KEGG: ttj:TTHA0658 hypothetical protein; SPTR: C1XQV5 Putative uncharacterized protein YP_003685379.1 COGs: COG1385 conserved hypothetical protein; InterPro IPR006700:IPR015947; KEGG: ttj:TTHA0657 16S ribosomal RNA methyltransferase RsmE; PFAM: protein of unknown function DUF558; SPTR: C1XQV4 Putative uncharacterized protein; PFAM: RNA methyltransferase; TIGRFAM: RNA methyltransferase, RsmE family YP_003685380.1 COGs: COG2264 Ribosomal protein L11 methylase; InterPro IPR010456; KEGG: ttj:TTHA0656 ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase; SPTR: C1XQV3 (LSU ribosomal protein L11P)-lysine N-methyltransferase; PFAM: Ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase YP_003685381.1 COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin; InterPro IPR006129:IPR006127:IPR006128; KEGG: ttj:TTHA0596 ABC transporter solute-binding protein; PFAM: periplasmic solute binding protein; SPTR: C1XQV2 ABC-type metal ion transport system, periplasmic component/surface adhesin; PFAM: Periplasmic solute binding protein family YP_003685382.1 COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: gau:GAU_2836 Fur family transcriptional regulator; PFAM: ferric-uptake regulator; SPTR: C1XQV1 Fe2+/Zn2+ uptake regulation protein; PFAM: Ferric uptake regulator family YP_003685383.1 COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611; KEGG: dra:DR_2553 carbohydrate kinase, putative; PFAM: PfkB domain protein; SPTR: C1XQV0 Sugar kinase, ribokinase; PFAM: pfkB family carbohydrate kinase YP_003685384.1 COGs: COG1003 Glycine cleavage system protein P (pyridoxal-binding) C-terminal domain; InterPro IPR015424:IPR015421; KEGG: tth:TTC0151 glycine dehydrogenase subunit 2; PRIAM: Glycine dehydrogenase (decarboxylating); SPTR: C1XQU9 Glycine dehydrogenase (Decarboxylating) beta subunit; PFAM: Glycine cleavage system P-protein YP_003685385.1 COGs: COG0403 Glycine cleavage system protein P (pyridoxal-binding) N-terminal domain; InterPro IPR020580:IPR015424; KEGG: ttj:TTHA0525 glycine dehydrogenase subunit 1; PFAM: Glycine cleavage system P-protein-like; PRIAM: Glycine dehydrogenase (decarboxylating); SPTR: C1XQU8 Glycine dehydrogenase (Decarboxylating) alpha subunit; PFAM: Glycine cleavage system P-protein YP_003685386.1 COGs: COG0509 Glycine cleavage system H protein (lipoate-binding); InterPro IPR002930:IPR017453:IPR011053; KEGG: ttj:TTHA0524 glycine cleavage system protein H; PFAM: glycine cleavage H-protein; SPTR: C1XQU7 Glycine cleavage system H protein; TIGRFAM: glycine cleavage system H protein; PFAM: Glycine cleavage H-protein; TIGRFAM: glycine cleavage system H protein YP_003685387.1 COGs: COG0404 Glycine cleavage system T protein (aminomethyltransferase); InterPro IPR006223:IPR006222:IPR013977; KEGG: ttj:TTHA0523 glycine cleavage system aminomethyltransferase T; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; SPTR: C1XQU6 Aminomethyltransferase; TIGRFAM: glycine cleavage system T protein; PFAM: Aminomethyltransferase folate-binding domain; Glycine cleavage T-protein C-terminal barrel domain; TIGRFAM: glycine cleavage system T protein YP_003685388.1 COGs: COG2229 GTPase; InterPro IPR001806; KEGG: tth:TTC0767 gliding motility protein; SPTR: C1XQU5 Predicted GTPase, COG2229; PFAM: ADP-ribosylation factor family YP_003685389.1 InterPro IPR004942; KEGG: ttj:TTHA1131 gliding protein (MglB); PFAM: Roadblock/LC7 family protein; SPTR: C1XQU4 Roadblock/LC7 domain-containing protein; PFAM: Roadblock/LC7 domain YP_003685390.1 COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR011650:IPR002933; KEGG: ttj:TTHA1130 ArgE/DapE/Acy1 family peptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; SPTR: C1XQU3 Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain YP_003685391.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002925; KEGG: tth:TTC0763 putative hydrolase; PFAM: dienelactone hydrolase; SPTR: C1XQU2 Dienelactone hydrolase family protein; PFAM: Prolyl oligopeptidase family YP_003685392.1 COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterProIPR007197:IPR010723:IPR006638:IPR013785:IPR 004559; KEGG: tth:TTC0123 coproporphyrinogen oxidase, anaerobic; PFAM: Radical SAM domain protein; HemN domain protein; PRIAM: Coproporphyrinogen dehydrogenase; SMART: Elongator protein 3/MiaB/NifB; SPTR: C1XQU1 Coproporphyrinogen III oxidase, anaerobic; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase YP_003685393.1 COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: sco:SCP1.259 putative transposon transposase; PFAM: transposase mutator type; SPTR: C1XP69 Transposase; PFAM: Transposase, Mutator family YP_003685394.1 COGs: COG0366 Glycosidase; InterProIPR006589:IPR012810:IPR006047:IPR013781:IPR 017853; KEGG: mxa:MXAN_3684 trehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: C1XQT7 Trehalose synthase; TIGRFAM: trehalose synthase; PFAM: Alpha amylase, catalytic domain; TIGRFAM: trehalose synthase YP_003685395.1 COGs: COG0526 Thiol-disulfide isomerase and thioredoxins; InterPro IPR017936:IPR013740:IPR012336:IPR012335; KEGG: ttj:TTHA0840 thiol:disulfide interchange protein; PFAM: Redoxin domain protein; SPTR: C1XQT6 Thiol-disulfide isomerase-like thioredoxin; PFAM: Redoxin YP_003685396.1 COGs: COG0595 hydrolase of the metallo-beta-lactamase superfamily; InterPro IPR011108:IPR005829; KEGG: ttj:TTHA1140 metallo-beta-lactamase superfamily protein; PFAM: RNA-metabolising metallo-beta-lactamase; SPTR: C1XQT5 Predicted hydrolase of the metallo-beta-lactamase superfamily; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; TIGRFAM: conserved hypothetical protein YP_003685397.1 COGs: COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); InterProIPR015847:IPR020568:IPR012162:IPR015848:IPR 012340:IPR016027:IPR003029:IPR004088:IPR018111:IPR001247:I PR004087; KEGG: tth:TTC0774 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; RNA binding S1 domain protein; K Homology, type 1, subgroup; Polynucleotide phosphorylase, phosphorolytic RNA-binding; PRIAM: Polyribonucleotide nucleotidyltransferase; SMART: KH domain protein; SPTR: C1XQT4 Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase); TIGRFAM: polyribonucleotide nucleotidyltransferase; PFAM: KH domain; S1 RNA binding domain; 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; Polyribonucleotide nucleotidyltransferase, RNA binding domain; TIGRFAM: polyribonucleotide nucleotidyltransferase YP_003685398.1 COGs: COG0184 Ribosomal protein S15P/S13E; InterPro IPR000589:IPR009068:IPR005290; KEGG: ttj:TTHA1138 30S ribosomal protein S15; PFAM: ribosomal protein S15; SPTR: C1XQT3 30S ribosomal protein S15; TIGRFAM: ribosomal protein S15; PFAM: Ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle YP_003685399.1 COGs: COG2271 Sugar phosphate permease; InterPro IPR011701:IPR016196; KEGG: ttj:TTHA1137 major facilitator superfamily transporter; PFAM: major facilitator superfamily MFS_1; SPTR: C1XQT2 Sugar phosphate permease; PFAM: Major Facilitator Superfamily YP_003685400.1 COGs: COG0843 Heme/copper-type cytochrome/quinol oxidase subunit 1; InterPro IPR000883; KEGG: ttj:TTHA1135 ba3-type cytochrome c oxidase polypeptide I; PFAM: cytochrome c oxidase subunit I; SPTR: C1XQT1 Heme/copper-type cytochrome/quinol oxidase, subunit 1; PFAM: Cytochrome C and Quinol oxidase polypeptide I YP_003685401.1 COGs: COG1622 Heme/copper-type cytochrome/quinol oxidase subunit 2; InterPro IPR002429:IPR001505:IPR008972:IPR015209; KEGG: ttj:TTHA1134 ba3-type cytochrome c oxidase polypeptide II; PFAM: cytochrome c oxidase subunit II; Cytochrome C oxidase subunit IIa transmembrane; SPTR: C1XQT0 Heme/copper-type cytochrome/quinol oxidases, subunit 2; PFAM: Cytochrome C oxidase subunit II, periplasmic domain; Cytochrome C oxidase subunit II, transmembrane YP_003685402.1 InterPro IPR012538; KEGG: ttj:TTHA1133 ba3-type cytochrome c oxidase polypeptide IIA; PFAM: cytochrome c oxidase subunit IIa; SPTR: C1XQS9 Cytochrome c oxidase subunit IIa family; PFAM: Cytochrome c oxidase subunit IIa family YP_003685403.1 COGs: COG0021 Transketolase; InterProIPR005478:IPR009014:IPR005474:IPR005475:IPR 005476:IPR015941; KEGG: ttj:TTHA0108 transketolase; PFAM: Transketolase domain protein; Transketolase central region; SPTR: C1XQS8 Transketolase; TIGRFAM: transketolase; PFAM: Transketolase, thiamine diphosphate binding domain; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: transketolase, bacterial and yeast YP_003685404.1 KEGG: ami:Amir_1722 glycosyl transferase family 39; SPTR: C1XQS7 Putative uncharacterized protein YP_003685405.1 KEGG: ttj:TTHA1126 hypothetical protein; SPTR: C1XQS6 Putative uncharacterized protein YP_003685406.1 COGs: COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); InterProIPR015365:IPR008991:IPR013185:IPR014722:IPR 013852:IPR011768:IPR012340:IPR016027:IPR020599:IPR001059; KEGG: ttj:TTHA1125 elongation factor P; PFAM: Elongation factor P ; Elongation factor KOW domain protein; Elongation factor P/YeiP protein; SMART: Elongation factor P; SPTR: C1XQS5 Elongation factor P; TIGRFAM: translation elongation factor P; PFAM: Elongation factor P, C-terminal; Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) OB domain; TIGRFAM: translation elongation factor P YP_003685407.1 COGs: COG0511 Biotin carboxyl carrier protein; InterPro IPR000089:IPR001249:IPR011053:IPR001882; KEGG: tth:TTC0759 biotin carboxyl carrier protein of acetyl-CoA carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; SPTR: C1XQS4 Biotin carboxyl carrier protein; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: Biotin-requiring enzyme; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_003685408.1 COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterProIPR013816:IPR011764:IPR013817:IPR005479:IPR 004549:IPR016185:IPR011054:IPR005482:IPR005481:IPR011761; KEGG: ttj:TTHA1123 acetyl-CoA carboxylase, biotin carboxylase subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; Carbamoyl-phosphate synthetase large chain domain protein; SMART: biotin carboxylase domain protein; SPTR: C1XQS3 Acetyl-CoA carboxylase, biotin carboxylase; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase YP_003685409.1 InterPro IPR020084:IPR000086:IPR015797; KEGG: phe:Phep_0219 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: C1XQS2 NTP pyrophosphohydrolase; PFAM: NUDIX domain YP_003685410.1 COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR000644:IPR001667:IPR003156:IPR002646; KEGG: ttj:TTHA0831 polyA polymerase family protein; PFAM: Polynucleotide adenylyltransferase region; phosphoesterase RecJ domain protein; phosphoesterase DHHA1; CBS domain containing protein; SPTR: C1XQS1 tRNA nucleotidyltransferase/poly(A) polymerase; PFAM: DHH family; CBS domain; Poly A polymerase head domain YP_003685411.1 KEGG: ttj:TTHA0832 hypothetical protein; SPTR: C1XQS0 Putative uncharacterized protein; PFAM: Peptidase family M50 YP_003685412.1 InterPro IPR008915; KEGG: tth:TTC0481 membrane metalloprotease; PFAM: peptidase M50; SPTR: C1XQR9 Zn-dependent protease; PFAM: Peptidase family M50 YP_003685413.1 COGs: COG0648 Endonuclease IV; InterPro IPR001719:IPR013022:IPR018246:IPR012307; KEGG: tth:TTC0482 endonuclease IV; PFAM: Xylose isomerase domain protein TIM barrel; PRIAM: Deoxyribonuclease IV (phage-T(4)-induced); SMART: AP endonuclease family 2; SPTR: C1XQR8 Endonuclease IV; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: apurinic endonuclease (APN1) YP_003685414.1 COGs: COG0797 Lipoprotein; InterProIPR012997:IPR009009:IPR018392:IPR005132:IPR 002482; KEGG: syp:SYNPCC7002_A0344 rare lipoprotein A; PFAM: Rare lipoprotein A; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: C1XQR7 Rare lipoprotein A; TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; LysM domain; TIGRFAM: rare lipoprotein A YP_003685415.1 COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR001131:IPR000994:IPR001714:IPR000587; KEGG: ttj:TTHA1068 proline dipeptidase; PFAM: peptidase M24; creatinase; SPTR: C1XQR6 Xaa-Pro aminopeptidase; PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain YP_003685416.1 COGs: COG0060 Isoleucyl-tRNA synthetase; InterProIPR002301:IPR009080:IPR009008:IPR002300:IPR 013155:IPR014729:IPR015905; KEGG: dge:Dgeo_1101 isoleucyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ia; tRNA synthetase valyl/leucyl anticodon-binding; SPTR: C1XQR5 Isoleucyl-tRNA synthetase; TIGRFAM: isoleucyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: isoleucyl-tRNA synthetase YP_003685417.1 COGs: COG0176 Transaldolase; InterPro IPR018225:IPR001585:IPR013785:IPR004731; KEGG: ttj:TTHA1066 putative translaldolase; PFAM: Transaldolase; PRIAM: Transaldolase; SPTR: C1XQR4 Transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; TIGRFAM: transaldolase, putative, TalC family YP_003685418.1 COGs: COG1158 Transcription termination factor; InterProIPR011112:IPR003593:IPR004665:IPR000194:IPR 012340:IPR011113; KEGG: ttj:TTHA1065 transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor domain protein; Rho termination factor RNA-binding; SMART: AAA ATPase; SPTR: C1XQR3 Transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: Rho termination factor, N-terminal domain; Rho termination factor, RNA-binding domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: transcription termination factor Rho YP_003685419.1 COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR011055:IPR018392:IPR016047:IPR002482; KEGG: tth:TTC0351 cell wall endopeptidase; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: C1XQR2 Metalloendopeptidase-like membrane protein; PFAM: Peptidase family M23; LysM domain YP_003685420.1 COGs: COG0214 Pyridoxine biosynthesis enzyme; InterPro IPR001852:IPR011060; KEGG: ttj:TTHA0704 pyridoxal biosynthesis lyase PdxS; PFAM: Vitamin B6 biosynthesis protein; SPTR: C1XQR1 Pyridoxal phosphate synthase yaaD subunit; TIGRFAM: pyridoxine biosynthesis protein; PFAM: SOR/SNZ family; TIGRFAM: pyridoxine biosynthesis protein YP_003685421.1 COGs: COG0311 glutamine amidotransferase involved in pyridoxine biosynthesis; InterPro IPR002161; KEGG: tth:TTC0355 glutamine amidotransferase subunit PdxT; PFAM: SNO glutamine amidotransferase; SPTR: C1XQR0 Pyridoxal phosphate synthase yaaE subunit; PFAM: SNO glutamine amidotransferase family YP_003685422.1 COGs: COG0017 Aspartyl/asparaginyl-tRNA synthetase; InterProIPR004522:IPR002312:IPR004365:IPR012340:IPR 016027:IPR006195:IPR004364; KEGG: ttj:TTHA0708 asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; SPTR: C1XQQ9 Asparaginyl-tRNA synthetase; TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: asparaginyl-tRNA synthetase YP_003685423.1 COGs: COG2367 Beta-lactamase class A; InterPro IPR012338; KEGG: dge:Dgeo_0316 beta-lactamase; SPTR: C1XQQ8 Beta-lactamase class A YP_003685424.1 COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR000150:IPR006379:IPR013200; KEGG: ttj:TTHA0709 putative hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; SPTR: C1XQQ7 HAD-superfamily hydrolase, subfamily IIB; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB YP_003685425.1 COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR006379:IPR013200:IPR000150; KEGG: ttj:TTHA0709 putative hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; SPTR: C1XQQ6 HAD-superfamily hydrolase, subfamily IIB; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB YP_003685426.1 COGs: COG0384 epimerase PhzC/PhzF homolog; InterPro IPR003719; KEGG: ttj:TTHA0710 phenazine biosynthesis protein related protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein; SPTR: C1XQQ5 Phenazine biosynthesis protein PhzF family; TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis-like protein; TIGRFAM: phenazine biosynthesis protein PhzF family YP_003685427.1 COGs: COG0173 Aspartyl-tRNA synthetase; InterProIPR002312:IPR004365:IPR004115:IPR004524:IPR 012340:IPR016027:IPR004364:IPR006195; KEGG: ttj:TTHA0711 aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; GAD domain protein; SPTR: C1XQQ4 Aspartyl-tRNA synthetase; TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD domain; tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: aspartyl-tRNA synthetase, bacterial type YP_003685428.1 COGs: COG0691 tmRNA-binding protein; InterPro IPR000037:IPR020081; KEGG: ttj:TTHA0902 SsrA-binding protein; PFAM: SmpB protein; SPTR: C1XQQ3 SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; TIGRFAM: SsrA-binding protein YP_003685429.1 COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: ttj:TTHA0901 hypothetical protein; PFAM: cell wall hydrolase/autolysin; SPTR: C1XQQ2 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase YP_003685430.1 InterPro IPR019606; KEGG: ddr:Deide_08790 conserved hypothetical protein, precursor; PFAM: Lipoprotein LpqB, GerMN domain; SPTR: C1XQQ1 Sporulation/spore germination protein; PFAM: Sporulation and spore germination YP_003685431.1 COGs: COG1196 Chromosome segregation ATPase; InterPro IPR010935:IPR003395; KEGG: ttj:TTHA0899 chromosome segregation SMC protein; PFAM: SMC domain protein; SMCs flexible hinge domain protein; SPTR: C1XQQ0 Chromosome segregation ATPase; PFAM: RecF/RecN/SMC N terminal domain; SMC proteins Flexible Hinge Domain YP_003685432.1 COGs: COG4974 Site-specific recombinase XerD; InterProIPR013762:IPR010998:IPR002104:IPR011010:IPR 004107; KEGG: dge:Dgeo_1117 phage integrase; PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: C1XQP9 Site-specific recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family YP_003685433.1 KEGG: hbu:Hbut_0034 aspartyl-tRNA synthetase; SPTR: C1XQP8 Putative uncharacterized protein YP_003685434.1 COGs: COG0124 Histidyl-tRNA synthetase; InterProIPR004154:IPR004516:IPR015807:IPR006195:IPR 002314; KEGG: ttj:TTHA0712 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; PRIAM: Histidine--tRNA ligase; SPTR: C1XQP7 Histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase YP_003685435.1 COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: tth:TTC0009 sugar ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XQP6 Carbohydrate ABC transporter membrane protein 1, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component YP_003685436.1 COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: tth:TTC0010 sugar ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XQP5 Carbohydrate ABC transporter membrane protein 2, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component YP_003685437.1 COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: ttj:TTHA0379 sugar ABC transporter, periplasmic sugar-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: C1XQP4 Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: Bacterial extracellular solute-binding protein YP_003685438.1 COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterProIPR020830:IPR016040:IPR020828:IPR006424:IPR 020831:IPR020832:IPR020829; KEGG: tth:TTC0549 glyceraldehyde 3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; SPTR: C1XQP3 Glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I YP_003685439.1 COGs: COG0126 3-phosphoglycerate kinase; InterPro IPR001576:IPR015901:IPR015911:IPR015824; KEGG: pzu:PHZ_p0042 phosphoglycerate kinase; PFAM: phosphoglycerate kinase; PRIAM: Phosphoglycerate kinase; SPTR: C1XQP2 Phosphoglycerate kinase; PFAM: Phosphoglycerate kinase YP_003685440.1 COGs: COG0149 Triosephosphate isomerase; InterPro IPR000652:IPR020861:IPR013785; KEGG: tth:TTC0581 triosephosphate isomerase; PFAM: triosephosphate isomerase; SPTR: C1XQP1 Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase; PFAM: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase YP_003685441.1 KEGG: hypothetical protein; SPTR: A7SKD3 Predicted protein (Fragment) YP_003685442.1 COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterProIPR015424:IPR004839:IPR015422:IPR001176:IPR 015421; KEGG: dge:Dgeo_2069 aminotransferase, class I and II; PFAM: aminotransferase class I and II; SPTR: C1XQP0 Aspartate/tyrosine/aromatic aminotransferase; PFAM: Aminotransferase class I and II YP_003685443.1 COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR008978:IPR002068; KEGG: ttj:TTHA1621 heat shock protein, class I; PFAM: heat shock protein Hsp20; SPTR: C1XQN9 Molecular chaperone (Small heat shock protein); PFAM: Hsp20/alpha crystallin family YP_003685444.1 InterPro IPR012337:IPR009057:IPR001584; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XQN8 Integrase family protein; PFAM: Integrase core domain YP_003685445.1 InterProIPR001647:IPR012287:IPR015893:IPR011075:IPR 009057; KEGG: ddr:Deide_02390 putative transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: C1XQN7 Transcriptional regulator, TetR family; PFAM: YsiA-like protein, C-terminal region; Bacterial regulatory proteins, tetR family YP_003685446.1 KEGG: tth:TTC0212 hypothetical protein; SPTR: C1XQN6 Putative uncharacterized protein YP_003685447.1 KEGG: ddr:Deide_00820 hypothetical protein; SPTR: C1XQN5 Putative uncharacterized protein YP_003685448.1 COGs: COG1164 Oligoendopeptidase F; InterPro IPR011977:IPR013647:IPR001567; KEGG: ttj:TTHA1532 oligoendopeptidase F; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; SPTR: C1XQN4 Oligoendopeptidase, pepF/M3 family; TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: Oligopeptidase F; Peptidase family M3; TIGRFAM: oligoendopeptidase, pepF/M3 family YP_003685449.1 InterPro IPR001647:IPR012287:IPR009057; KEGG: fre:Franean1_4621 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: C1XQN3 Transcriptional regulator, COG1309; PFAM: Bacterial regulatory proteins, tetR family YP_003685450.1 COGs: COG3294 conserved hypothetical protein; KEGG: ttj:TTHA1433 hypothetical protein; SPTR: C1XQN2 Uncharacterized conserved protein YP_003685451.1 COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR018376:IPR001753; KEGG: ttj:TTHA1434 3-hydroxybutyryl-CoA dehydratase; PFAM: Enoyl-CoA hydratase/isomerase; SPTR: C1XQN1 Short chain enoyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase family YP_003685452.1 COGs: COG0813 Purine-nucleoside phosphorylase; InterPro IPR000845:IPR018016; KEGG: ttj:TTHA1435 purine nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1; SPTR: C1XQN0 Purine-nucleoside phosphorylase; PFAM: Phosphorylase superfamily; TIGRFAM: purine-nucleoside phosphorylase, family 1 (deoD) YP_003685453.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: tth:TTC1071 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XQM9 ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter YP_003685454.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterProIPR012318:IPR018490:IPR001808:IPR018488:IPR 018335:IPR000595:IPR011991:IPR002373:IPR014710; KEGG: ttj:TTHA1437 Crp family transcriptional regulator; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; SPTR: C1XQM8 cAMP-binding protein; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain YP_003685455.1 COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR000056:IPR011060:IPR013785; KEGG: ttj:TTHA0106 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; PRIAM: Ribulose-phosphate 3-epimerase; SPTR: C1XQM7 Ribulose-5-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase YP_003685456.1 COGs: COG2045 Phosphosulfolactate phosphohydrolase; InterPro IPR005238; KEGG: ttj:TTHA1438 hypothetical protein; PFAM: 2-phosphosulfolactate phosphatase; PRIAM: 2-phosphosulfolactate phosphatase; SPTR: C1XQM6 2-phosphosulfolactate phosphatase; PFAM: 2-phosphosulpholactate phosphatase; TIGRFAM: 2-phosphosulfolactate phosphatase YP_003685457.1 COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR011650:IPR002933; KEGG: ttj:TTHA0509 N-acyl-L-amino acid amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; SPTR: C1XQM5 Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain YP_003685458.1 COGs: COG0789 transcriptional regulator protein; InterPro IPR000551:IPR009061; KEGG: ttj:TTHA0508 MerR family transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; SPTR: C1XQM4 Transcriptional regulator, MerR family; PFAM: MerR family regulatory protein YP_003685459.1 COGs: COG0281 Malic enzyme; InterProIPR016040:IPR012301:IPR015884:IPR012302:IPR 001891; KEGG: ttj:TTHA0520 malate dehydrogenase; PFAM: malic protein NAD-binding; malic protein domain protein; PRIAM: Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)); SPTR: C1XQM3 Malic enzyme; PFAM: Malic enzyme, NAD binding domain; Malic enzyme, N-terminal domain YP_003685460.1 COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR016161:IPR015590:IPR016162:IPR016160; KEGG: tth:TTC0513 aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: C1XQM2 Delta-1-piperideine-6-carboxylate dehydrogenase; PFAM: Aldehyde dehydrogenase family YP_003685461.1 COGs: COG0669 Phosphopantetheine adenylyltransferase; InterPro IPR001980:IPR014729:IPR004820:IPR004821; KEGG: ttj:TTHA0929 phosphopantetheine adenylyltransferase; PFAM: cytidylyltransferase; PRIAM: Pantetheine-phosphate adenylyltransferase; SPTR: C1XQM1 Phosphopantetheine adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: Cytidylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase, bacterial; cytidyltransferase-related domain YP_003685462.1 COGs: COG0742 N6-adenine-specific methylase; InterPro IPR016065:IPR004398; KEGG: ttj:TTHA0928 methyltransferase; PFAM: Protein of unknown function methylase putative; SPTR: C1XQM0 N6-adenine-specific methylase; PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family YP_003685463.1 COGs: COG0523 Putative GTPase (G3E family); InterPro IPR011629:IPR003495; KEGG: ddr:Deide_00450 putative cobalamin synthesis protein, P47K; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; SMART: cobalamin synthesis CobW domain protein; SPTR: C1XQL9 Predicted GTPase, G3E family; PFAM: CobW/HypB/UreG, nucleotide-binding domain; Cobalamin synthesis protein cobW C-terminal domain YP_003685464.1 COGs: COG5438 multitransmembrane protein; InterPro IPR012507; KEGG: tth:TTC0924 hypothetical protein; PFAM: YibE/F family protein; SPTR: C1XQL8 Predicted multitransmembrane protein; PFAM: YibE/F-like protein YP_003685465.1 InterPro IPR019316; KEGG: chl:Chy400_1569 blue (type 1) copper domain protein; PFAM: G8 domain; SPTR: C1XQL7 G8 domain-containing protein; PFAM: G8 domain YP_003685466.1 COGs: COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); InterProIPR003583:IPR018239:IPR001357:IPR010994:IPR 013839:IPR013840:IPR012340:IPR004149:IPR016027:IPR004150:I PR001679; KEGG: ttj:TTHA1097 DNA ligase [NAD+]; PFAM: NAD-dependent DNA ligase adenylation; zinc-finger NAD-dependent DNA ligase C4-type; BRCT domain protein; NAD-dependent DNA ligase OB-fold; PRIAM: DNA ligase (NAD(+)); SMART: NAD-dependent DNA ligase ; Helix-hairpin-helix DNA-binding class 1; BRCT domain protein; SPTR: C1XQL6 DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase OB-fold domain; NAD-dependent DNA ligase adenylation domain; BRCA1 C Terminus (BRCT) domain; TIGRFAM: DNA ligase, NAD-dependent YP_003685467.1 InterPro IPR012337:IPR002559; KEGG: cau:Caur_2446 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: C1XPT2 Transposase family protein; PFAM: Transposase DDE domain YP_003685468.1 COGs: COG1744 Uncharacterized ABC-type transport system periplasmic component/surface lipoprotein; InterPro IPR003760; KEGG: ttj:TTHA1098 membrane lipoprotein; PFAM: basic membrane lipoprotein; SPTR: C1XQL4 Nucleoside-binding protein; PFAM: Basic membrane protein YP_003685469.1 COGs: COG3845 ABC-type uncharacterized transport systems ATPase components; InterPro IPR017871:IPR003593:IPR003439; KEGG: cya:CYA_2437 carbohydrate ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XQL3 Nucleoside ABC transporter ATP-binding protein; PFAM: ABC transporter YP_003685470.1 COGs: COG1316 Transcriptional regulator; InterPro IPR004474; KEGG: syf:Synpcc7942_1360 cell envelope-related transcriptional attenuator; PFAM: cell envelope-related transcriptional attenuator; SPTR: C1XQL2 Cell envelope-related function transcriptional attenuator common domain; TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: Cell envelope-related transcriptional attenuator domain; TIGRFAM: cell envelope-related function transcriptional attenuator common domain YP_003685471.1 COGs: COG0077 Prephenate dehydratase; InterPro IPR001086:IPR002912; KEGG: ttj:TTHA1104 prephenate dehydratase; PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; PRIAM: Chorismate mutase; SPTR: C1XQL1 Prephenate dehydratase; PFAM: Prephenate dehydratase; ACT domain YP_003685472.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006:IPR013670; KEGG: ddr:Deide_08380 putative response regulator, CheY; PFAM: response regulator receiver; EcoEI R domain protein; SMART: response regulator receiver; SPTR: C1XQL0 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; PFAM: Response regulator receiver domain; EcoEI R protein C-terminal YP_003685473.1 COGs: COG2348 Uncharacterized protein involved in methicillin resistance; InterPro IPR003447:IPR016181; KEGG: tth:TTC0738 hypothetical protein; PFAM: Methicillin resistance protein; SPTR: C1XQK9 Uncharacterized methicillin resistance protein; PFAM: FemAB family YP_003685474.1 KEGG: ttj:TTHA1102 hypothetical protein; SPTR: C1XQK8 Putative uncharacterized protein YP_003685475.1 InterPro IPR005653; KEGG: ttj:TTHA1101 hypothetical protein; PFAM: OstA family protein; SPTR: C1XQK7 OstA-like protein; PFAM: OstA-like protein YP_003685476.1 KEGG: ttj:TTHA1100 hypothetical protein; SPTR: C1XQK6 Putative uncharacterized protein; PFAM: OstA-like protein YP_003685477.1 COGs: COG0517 FOG: CBS domain; InterPro IPR000644:IPR013785; KEGG: ttj:TTHA0829 putative acetoin utilization protein, acetoin dehydrogenase; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; SPTR: C1XQK5 CBS domain-containing protein; PFAM: CBS domain YP_003685478.1 COGs: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components; InterPro IPR015168; KEGG: dda:Dd703_0038 NMT1/THI5 like domain protein; PFAM: NMT1/THI5 like domain protein; SPTR: C1XQK4 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component; PFAM: NMT1/THI5 like YP_003685479.1 COGs: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system permease component; InterPro IPR000515; KEGG: rsk:RSKD131_1520 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XQK3 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_003685480.1 COGs: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system permease component; InterPro IPR000515; KEGG: rru:Rru_A3454 binding-protein dependent transport system inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XQK2 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_003685481.1 COGs: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components; InterPro IPR015168; KEGG: pjd:Pjdr2_6133 NMT1/THI5 like domain protein; PFAM: NMT1/THI5 like domain protein; SPTR: C1XQK1 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component; PFAM: NMT1/THI5 like YP_003685482.1 COGs: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system permease component; InterPro IPR000515; KEGG: oan:Oant_4580 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XQK0 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_003685483.1 COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; InterPro IPR013108:IPR011059; KEGG: rxy:Rxyl_0224 N-isopropylammelide isopropylaminohydrolase; PFAM: Amidohydrolase 3; PRIAM: Cytosine deaminase; SPTR: C1XQJ9 Cytosine deaminase-like metal-dependent hydrolase; PFAM: Amidohydrolase family YP_003685484.1 COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: oan:Oant_0346 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XQJ8 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component; PFAM: ABC transporter YP_003685485.1 COGs: COG1280 Putative threonine efflux protein; InterPro IPR001123; KEGG: atc:AGR_pAT_516 hypothetical protein; PFAM: Lysine exporter protein (LYSE/YGGA); SPTR: C1XQJ7 Putative threonine efflux protein; PFAM: LysE type translocator YP_003685486.1 COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR006680:IPR011778:IPR011059; KEGG: pjd:Pjdr2_4687 dihydropyrimidinase; PFAM: amidohydrolase; SPTR: C1XQJ6 D-hydantoinase; TIGRFAM: dihydropyrimidinase; PFAM: Amidohydrolase family; TIGRFAM: D-hydantoinase; dihydroorotase, multifunctional complex type YP_003685487.1 KEGG: tth:TTC0860 hypothetical protein; SPTR: Q72JB8 Putative uncharacterized protein YP_003685488.1 COGs: COG0167 Dihydroorotate dehydrogenase; InterProIPR005720:IPR017896:IPR001450:IPR012135:IPR 013785:IPR017900; KEGG: gyc:GYMC61_2213 dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate oxidase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C1XQJ5 Dihydroorotate oxidase B, catalytic subunit; dihydropyrimidine dehydrogenase (NADP+); dihydrouracil dehydrogenase (NAD+); TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase (subfamily 1) family protein YP_003685489.1 COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterProIPR009051:IPR017896:IPR013027:IPR012285:IPR 000759; KEGG: gyc:GYMC61_2212 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: C1XQJ4 Glutamate synthase (NADPH) small subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_003685490.1 COGs: COG0466 ATP-dependent Lon protease; InterProIPR004815:IPR020568:IPR003111:IPR003959:IPR 008269:IPR001984:IPR003593:IPR008268; KEGG: ttj:TTHA0770 ATP-dependent protease La (Lon protease); PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; PRIAM: Endopeptidase La; SMART: peptidase S16 lon domain protein; AAA ATPase; SPTR: C1XQJ3 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: ATP-dependent protease La (LON) domain; ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease La YP_003685491.1 KEGG: hch:HCH_01153 hypothetical protein; SPTR: C1XQI9 Putative uncharacterized protein YP_003685492.1 KEGG: rxy:Rxyl_0108 hypothetical protein; SPTR: C1XQI8 Putative uncharacterized protein YP_003685493.1 KEGG: ttj:TTHA1307 hypothetical protein; SPTR: C1XQI7 Putative uncharacterized protein YP_003685494.1 COGs: COG0621 2-methylthioadenine synthetase; InterProIPR005839:IPR013848:IPR006463:IPR007197:IPR 013785:IPR002792:IPR006638; KEGG: ttj:TTHA1308 hypothetical protein; PFAM: Protein of unknown function UPF0004 ; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: C1XQI6 tRNA-i(6)A37 thiotransferase enzyme MiaB; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; RNA modification enzyme, MiaB family YP_003685495.1 InterPro IPR011009:IPR002575; KEGG: cce:Ccel_1212 aminoglycoside phosphotransferase; PFAM: aminoglycoside phosphotransferase; SPTR: C1XQI5 Putative homoserine kinase type II (Protein kinase fold); PFAM: Phosphotransferase enzyme family; TIGRFAM: Fibrobacter succinogenes paralogous family TIGR02172 YP_003685496.1 COGs: COG0058 Glucan phosphorylase; InterPro IPR000811:IPR011834; KEGG: tth:TTC0808 glycogen phosphorylase; PFAM: glycosyl transferase family 35; PRIAM: Phosphorylase; SPTR: C1XQI3 Phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: Carbohydrate phosphorylase; Protein of unknown function (DUF3417); TIGRFAM: alpha-glucan phosphorylases YP_003685497.1 InterPro IPR005358; KEGG: tth:TTC1166 hypothetical protein; PFAM: protein of unknown function UPF0153; SPTR: C1XQI2 Uncharacterized protein family (UPF0153); PFAM: Uncharacterised protein family (UPF0153) YP_003685498.1 COGs: COG1310 metal-dependent protease of the PAD1/JAB1 superfamily; InterPro IPR000555; KEGG: ttj:TTHA1497 hypothetical protein; SMART: Mov34/MPN/PAD-1 family protein; SPTR: C1XQI1 Predicted metal-dependent protease of the PAD1/JAB1 superfamily YP_003685499.1 COGs: COG5587 conserved hypothetical protein; InterPro IPR012808:IPR015996; KEGG: aba:Acid345_1614 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: C1XQI0 Putative uncharacterized protein; PFAM: Conserved hypothetical protein (DUF2461); TIGRFAM: conserved hypothetical protein TIGR02453 YP_003685500.1 COGs: COG0480 Translation elongation factors (GTPase); InterProIPR020568:IPR005517:IPR000640:IPR009000:IPR 014721:IPR009022:IPR000795:IPR005225:IPR004161; KEGG: ttj:TTHA1498 elongation factor G; PFAM: elongation factor G domain IV; protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; SMART: elongation factor G domain IV; elongation factor G domain protein; SPTR: C1XQH9 Translation elongation factor 2 (EF-2/EF-G); TIGRFAM: small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain YP_003685501.1 KEGG: sco:SCO1227 DNA-binding protein; SPTR: C1XQH8 Putative uncharacterized protein YP_003685502.1 InterPro IPR011933; KEGG: ttj:TTHA1253 hypothetical protein; SPTR: C1XQH7 N-terminal double-transmembrane domain-containing protein; TIGRFAM: conserved hypothetical protein; PFAM: Aerotolerance regulator N-terminal; TIGRFAM: N-terminal double-transmembrane domain YP_003685503.1 InterPro IPR018987; KEGG: ttj:TTHA1254 hypothetical protein; PFAM: Protein of unknown function DUF1999; SPTR: C1XQH6 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1999) YP_003685504.1 KEGG: ttj:TTHA1255 hypothetical protein; SPTR: C1XQH5 Putative uncharacterized protein YP_003685505.1 InterPro IPR002559; KEGG: tth:TT_P0158 hypothetical protein; PFAM: transposase IS4 family protein; SPTR: C1XPN1 Transposase family protein; PFAM: Transposase DDE domain YP_003685506.1 COGs: COG1048 Aconitase A; InterProIPR015931:IPR018136:IPR001030:IPR015932:IPR 000573:IPR015928:IPR006249; KEGG: tth:TTC0374 aconitate hydratase; PFAM: aconitate hydratase domain protein; SPTR: C1XQH2 Aconitase; TIGRFAM: aconitate hydratase 1; PFAM: Aconitase C-terminal domain; Aconitase family (aconitate hydratase); TIGRFAM: aconitate hydratase 1 YP_003685507.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073:IPR002332:IPR000639; KEGG: cag:Cagg_0368 alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold; SPTR: C1XQH1 Predicted hydrolase or acyltransferase of alpha/beta superfamily; PFAM: alpha/beta hydrolase fold YP_003685508.1 COGs: COG3383 Uncharacterized anaerobic dehydrogenase; InterPro IPR010046:IPR009010:IPR006656:IPR006657; KEGG: ttj:TTHB197 formate dehydrogenase; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; PRIAM: Nitrate reductase; SPTR: C1XQH0 Molybdopterin-dependent oxidoreductase alpha subunit; TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; TIGRFAM: oxidoreductase alpha (molybdopterin) subunit YP_003685509.1 COGs: COG1526 Uncharacterized protein required for formate dehydrogenase activity; InterPro IPR003786; KEGG: rxy:Rxyl_0145 formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; SPTR: C1XQG9 Formate dehydrogenase family accessory protein FdhD; TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: FdhD/NarQ family; TIGRFAM: formate dehydrogenase family accessory protein FdhD YP_003685510.1 COGs: COG1550 conserved hypothetical protein; InterPro IPR007546; KEGG: ttj:TTHA0560 hypothetical protein; PFAM: protein of unknown function DUF503; SPTR: C1XQG8 Uncharacterized conserved protein; PFAM: Protein of unknown function (DUF503) YP_003685511.1 KEGG: bcv:Bcav_2131 hypothetical protein; SPTR: C1XQG7 Putative uncharacterized protein YP_003685512.1 COGs: COG0277 FAD/FMN-containing dehydrogenase; InterProIPR016166:IPR016164:IPR006094:IPR004113:IPR 016167; KEGG: dge:Dgeo_0624 FAD linked oxidase-like protein; PFAM: FAD linked oxidase domain protein; SPTR: C1XQG6 FAD/FMN-dependent dehydrogenase; PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain; TIGRFAM: glycolate oxidase, subunit GlcD YP_003685513.1 KEGG: hypothetical protein; SPTR: C1XQG5 Putative uncharacterized protein YP_003685514.1 COGs: COG2947 conserved hypothetical protein; InterPro IPR002740; KEGG: cya:CYA_0968 hypothetical protein; PFAM: protein of unknown function DUF55; SPTR: C1XQG4 Uncharacterized conserved protein; PFAM: Protein of unknown function DUF55 YP_003685515.1 COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR003004:IPR001992:IPR018076; KEGG: ttj:TTHA0794 pilus assembly protein PilC; PFAM: Type II secretion system F domain; SPTR: C1XQG3 Type II secretory pathway, component PulF; PFAM: Bacterial type II secretion system protein F domain; TIGRFAM: general secretion pathway protein F YP_003685516.1 COGs: COG1386 transcriptional regulator protein containing the HTH domain; InterPro IPR005234:IPR011991; KEGG: ttj:TTHA0792 hypothetical protein; PFAM: chromosome segregation and condensation protein ScpB; SPTR: C1XQG2 Condensin subunit ScpB; TIGRFAM: segregation and condensation protein B; PFAM: Putative transcriptional regulators (Ypuh-like); TIGRFAM: segregation and condensation protein B YP_003685517.1 COGs: COG2045 Phosphosulfolactate phosphohydrolase; InterPro IPR005238; KEGG: tth:TTC0055 hypothetical protein; PFAM: 2-phosphosulfolactate phosphatase; SPTR: C1XQG1 Phosphosulfolactate phosphohydrolase-like enzyme; PFAM: 2-phosphosulpholactate phosphatase YP_003685518.1 COGs: COG1922 Teichoic acid biosynthesis protein; InterPro IPR004629; KEGG: ttj:TTHA0422 UDP-N-acetyl-D-mannosaminuronic acid transferase; PFAM: glycosyl transferase WecB/TagA/CpsF; PRIAM: N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase; SPTR: C1XQG0 N-acetylmannosaminyltransferase; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: Glycosyl transferase WecB/TagA/CpsF family; TIGRFAM: bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family YP_003685519.1 COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterProIPR005675:IPR013709:IPR000891:IPR013785:IPR 002034; KEGG: tth:TTC0847 putative alpha-isopropylmalate/homocitrate synthase family transferase; PFAM: LeuA allosteric (dimerisation) domain; pyruvate carboxyltransferase; SPTR: C1XQF9 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: LeuA allosteric (dimerisation) domain; HMGL-like; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein YP_003685520.1 COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterProIPR005671:IPR000891:IPR002034:IPR013709:IPR 013785; KEGG: tth:TTC0849 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; SPTR: C1XQF8 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: HMGL-like; LeuA allosteric (dimerisation) domain; TIGRFAM: 2-isopropylmalate synthase, bacterial type YP_003685521.1 COGs: COG0059 Ketol-acid reductoisomerase; InterProIPR013023:IPR008927:IPR016040:IPR013116:IPR 000506; KEGG: ttj:TTHA1211 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase catalytic domain protein; acetohydroxy acid isomeroreductase; PRIAM: Ketol-acid reductoisomerase; SPTR: C1XQF7 Ketol-acid reductoisomerase; TIGRFAM: ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase, catalytic domain; TIGRFAM: ketol-acid reductoisomerase YP_003685522.1 KEGG: syn:slr1115 hypothetical protein; SPTR: C1XQF6 Putative uncharacterized protein YP_003685523.1 COGs: COG0440 Acetolactate synthase small (regulatory) subunit; InterPro IPR002912:IPR004789:IPR019455; KEGG: ttj:TTHA1212 acetolactate synthase 3 regulatory subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein; SPTR: C1XQF5 Acetolactate synthase, small subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: ACT domain; Small subunit of acetolactate synthase; TIGRFAM: acetolactate synthase, small subunit YP_003685524.1 COGs: COG0028 Thiamine pyrophosphate-requiring protein; InterProIPR012846:IPR012001:IPR012000:IPR011766:IPR 000399; KEGG: tth:TTC0852 acetolactate synthase large subunit; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP-binding; SPTR: C1XJ74 Acetolactate synthase; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type YP_003685525.1 COGs: COG3542 conserved hypothetical protein; InterPro IPR009327:IPR014710; KEGG: ppd:Ppro_3205 hypothetical protein; PFAM: protein of unknown function DUF985; SPTR: C1XQF1 Uncharacterized conserved protein; PFAM: Cupin superfamily (DUF985) YP_003685526.1 COGs: COG0492 Thioredoxin reductase; InterPro IPR013027:IPR001327:IPR000103; KEGG: tth:TTC0853 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: C1XQF0 Thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_003685527.1 COGs: COG0861 Membrane protein TerC possibly involved in tellurium resistance; InterPro IPR005496; KEGG: gme:Gmet_1782 integral membrane protein TerC; PFAM: Integral membrane protein TerC; SPTR: C1XQE9 Membrane protein TerC, possibly involved in tellurium resistance; PFAM: Integral membrane protein TerC family YP_003685528.1 InterPro IPR000835:IPR011991; KEGG: ddr:Deide_13420 putative transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1XQE8 Transcriptional regulator, MarR family; PFAM: MarR family YP_003685529.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701:IPR001958:IPR016196; KEGG: dge:Dgeo_0530 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: C1XQE7 Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily; TIGRFAM: Multidrug resistance protein YP_003685530.1 COGs: COG0114 Fumarase; InterProIPR000362:IPR008948:IPR020557:IPR003031:IPR 005677:IPR018951; KEGG: dge:Dgeo_2328 fumarate hydratase; PFAM: fumarate lyase; Fumarase C-like; SPTR: C1XQE6 Fumarase; TIGRFAM: fumarate hydratase, class II; PFAM: Lyase; Fumarase C C-terminus; TIGRFAM: fumarate hydratase, class II YP_003685531.1 COGs: COG0605 Superoxide dismutase; InterPro IPR019832:IPR019831:IPR001189:IPR019833; KEGG: sth:STH1047 superoxide dismutase; PFAM: Manganese/iron superoxide dismutase-like; PRIAM: Superoxide dismutase; SPTR: C1XQE5 Superoxide dismutase; PFAM: Iron/manganese superoxide dismutases, alpha-hairpin domain; Iron/manganese superoxide dismutases, C-terminal domain YP_003685532.1 InterPro IPR008969; KEGG: bcj:BCAS0321 hypothetical glycine-rich autotransporter protein; SPTR: C1XQE4 Putative uncharacterized protein YP_003685533.1 COGs: COG3899 ATPase; InterPro IPR011990:IPR019734:IPR005158:IPR013026; KEGG: rrs:RoseRS_4327 transcriptional activator domain-containing protein; PFAM: transcriptional activator domain; SPTR: C1XQE3 Putative transcriptional regulator; PFAM: Bacterial transcriptional activator domain YP_003685534.1 COGs: COG0134 Indole-3-glycerol phosphate synthase; InterPro IPR013798:IPR013785:IPR011060:IPR001468; KEGG: ttj:TTHA1164 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase; PRIAM: Indole-3-glycerol-phosphate synthase; SPTR: C1XQE2 Indole-3-glycerol phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase YP_003685535.1 COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR016035:IPR002641; KEGG: ttj:TTHA1161 hypothetical protein; PFAM: Patatin; SPTR: C1XQE1 Predicted esterase of the alpha-beta hydrolase superfamily; PFAM: Patatin-like phospholipase YP_003685536.1 KEGG: pfl:PFL_2327 putative ABC transporter; SPTR: C1XQE0 Putative uncharacterized protein YP_003685537.1 COGs: COG4666 TRAP-type uncharacterized transport system fused permease components; InterPro IPR011853:IPR010656; KEGG: ttj:TTHA1158 hypothetical protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; SPTR: C1XQD9 TRAP transporter, 4TM/12TM fusion protein; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein YP_003685538.1 COGs: COG2358 TRAP-type uncharacterized transport system periplasmic component; InterPro IPR011852; KEGG: ttj:TTHA1157 immunogenic protein; SPTR: C1XQD8 TRAP transporter solute receptor, TAXI family; TIGRFAM: TRAP transporter solute receptor, TAXI family; PFAM: NMT1/THI5 like; TIGRFAM: TRAP transporter solute receptor, TAXI family YP_003685539.1 InterPro IPR012337:IPR002559; KEGG: cau:Caur_2446 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: C1XPT2 Transposase family protein; PFAM: Transposase DDE domain YP_003685540.1 COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; InterPro IPR016027:IPR010280; KEGG: tth:TTC0988 putative tRNA (uracil-5-)-methyltransferase; PFAM: (Uracil-5)-methyltransferase; SPTR: C1XQD6 23S rRNA m(5)U-1939 methyltransferase; PFAM: tRNA (Uracil-5-)-methyltransferase; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumA YP_003685541.1 COGs: COG0107 Imidazoleglycerol-phosphate synthase; InterPro IPR004651:IPR011060:IPR006062:IPR013785; KEGG: tth:TTC1079 imidazole glycerol phosphate synthase subunit HisF; PFAM: histidine biosynthesis protein; SPTR: C1XQD5 Imidazole glycerol phosphate synthase subunit hisF; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: Histidine biosynthesis protein; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit YP_003685542.1 COGs: COG0139 Phosphoribosyl-AMP cyclohydrolase; InterPro IPR008179:IPR002496; KEGG: ttj:TTHA1445 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; SPTR: C1XQD4 Phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphatase; TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase; Phosphoribosyl-AMP cyclohydrolase; TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase YP_003685543.1 COGs: COG1494 Fructose-1 6-bisphosphatase/sedoheptulose 1 7-bisphosphatase and related protein; InterPro IPR004464; KEGG: ttj:TTHA1446 fructose 1,6-bisphosphatase II; PFAM: GlpX family protein; PRIAM: Fructose-bisphosphatase; SPTR: C1XQD3 Fructose-1,6-bisphosphatase, class II; TIGRFAM: fructose-1,6-bisphosphatase, class II; PFAM: Bacterial fructose-1,6-bisphosphatase, glpX-encoded; TIGRFAM: fructose-1,6-bisphosphatase, class II YP_003685544.1 COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR017871:IPR003593:IPR015863:IPR003439; KEGG: tth:TT_P0177 transporter; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XQD1 ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component; PFAM: ABC transporter YP_003685545.1 COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: tth:TT_P0178 hemin transport system permease protein HmuU; PFAM: transport system permease protein; SPTR: C1XQD0 ABC-type Fe3+-siderophore transport system, permease component; PFAM: FecCD transport family YP_003685546.1 KEGG: ttj:TTHB221 hypothetical protein; SPTR: C1XQC9 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3386) YP_003685547.1 COGs: COG4558 ABC-type hemin transport system periplasmic component; InterPro IPR002491; KEGG: ttj:TTHB220 hemin ABC transporter, periplasmic hemin-binding protein; PFAM: periplasmic binding protein; SPTR: C1XQC8 ABC-type hemin transport system, periplasmic component; PFAM: Periplasmic binding protein YP_003685548.1 COGs: COG2329 Uncharacterized protein involved in biosynthesis of extracellular polysaccharides; InterPro IPR007138:IPR011008; KEGG: ttj:TTHB222 hypothetical protein; PFAM: Antibiotic biosynthesis monooxygenase; SPTR: C1XQC7 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides; PFAM: Antibiotic biosynthesis monooxygenase YP_003685549.1 InterPro IPR020785; KEGG: ttj:TTHA0548 hypothetical protein; SPTR: C1XQC6 Putative uncharacterized protein YP_003685550.1 KEGG: ttj:TTHA0547 hypothetical protein; SPTR: C1XQC5 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3234) YP_003685551.1 COGs: COG0136 Aspartate-semialdehyde dehydrogenase; InterProIPR005986:IPR016040:IPR000534:IPR012280:IPR 012080; KEGG: ttj:TTHA0545 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding; PRIAM: Aspartate-semialdehyde dehydrogenase; SMART: Semialdehyde dehydrogenase NAD - binding; SPTR: C1XQC4 Aspartate semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: aspartate-semialdehyde dehydrogenase, gamma-proteobacterial; aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) YP_003685552.1 COGs: COG0423 Glycyl-tRNA synthetase (class II); InterPro IPR002315:IPR004154:IPR006195:IPR002314; KEGG: dge:Dgeo_1716 glycyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; SPTR: C1XQC3 Glycyl-tRNA synthetase; TIGRFAM: glycyl-tRNA synthetase; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: glycyl-tRNA synthetase, dimeric type YP_003685553.1 COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR004176:IPR003959:IPR013093:IPR019489:IPR 018368:IPR003593:IPR001270; KEGG: ttj:TTHA0542 ATP-dependent Clp protease, ATP-binding subunit (ClpA); PFAM: ATPase AAA-2 domain protein; Clp domain protein; AAA ATPase central domain protein; Clp ATPase-like; SMART: AAA ATPase; SPTR: C1XQC2 ATP-dependent Clp protease ATP-binding subunit ClpA; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA) YP_003685554.1 COGs: COG1066 ATP-dependent serine protease; InterPro IPR020568:IPR003593:IPR004504; KEGG: tth:TTC0173 DNA repair protein RadA; SMART: AAA ATPase; SPTR: C1XQC1 DNA repair protein radA; TIGRFAM: DNA repair protein RadA; PFAM: KaiC; Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: DNA repair protein RadA YP_003685555.1 COGs: COG4956 Integral membrane protein (PIN domain superfamily); InterPro IPR002716:IPR002792:IPR006596; KEGG: ttj:TTHA0540 hypothetical protein; PFAM: PilT protein domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Nucleotide binding protein PINc; SPTR: C1XQC0 Integral membrane protein (PIN domain superfamily); PFAM: TRAM domain; PIN domain YP_003685556.1 COGs: COG0045 Succinyl-CoA synthetase beta subunit; InterProIPR017866:IPR011761:IPR016102:IPR013650:IPR 005811:IPR005809:IPR013816; KEGG: ttj:TTHA0538 succinyl-CoA synthetase beta chain; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase; PRIAM: Succinate--CoA ligase (ADP-forming); SPTR: C1XQB9 Succinyl-CoA synthetase (ADP-forming) beta subunit; TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: CoA-ligase; ATP-grasp domain; TIGRFAM: succinyl-CoA synthetase, beta subunit YP_003685557.1 COGs: COG0074 Succinyl-CoA synthetase alpha subunit; InterProIPR016040:IPR005810:IPR016102:IPR003781:IPR 005811; KEGG: ttj:TTHA0537 succinyl-CoA synthetase alpha chain; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; SMART: CoA-binding domain protein; SPTR: C1XQB8 Succinyl-CoA ligase [ADP-forming] subunit alpha; TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA binding domain; CoA-ligase; TIGRFAM: succinyl-CoA synthetase, alpha subunit YP_003685558.1 COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891:IPR013785; KEGG: ttj:TTHA1526 hydroxymethylglutaryl-CoA lyase like protein; PFAM: pyruvate carboxyltransferase; PRIAM: Hydroxymethylglutaryl-CoA lyase; SPTR: C1XQB7 Hydroxymethylglutaryl-CoA lyase; PFAM: HMGL-like YP_003685559.1 KEGG: mta:Moth_0170 hypothetical protein; SPTR: C1XQB6 Uncharacterized conserved protein YP_003685560.1 COGs: COG2442 conserved hypothetical protein; InterPro IPR007367; KEGG: pmx:PERMA_1860 hypothetical protein; PFAM: protein of unknown function DUF433; SPTR: C1XQB5 Uncharacterized conserved protein; PFAM: Protein of unknown function (DUF433) YP_003685561.1 COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR011763:IPR011762:IPR000022; KEGG: ttj:TTHA1557 propionyl-CoA carboxylase, beta subunit; PFAM: carboxyl transferase; PRIAM: Methylcrotonoyl-CoA carboxylase; SPTR: C1XQB4 Acetyl-CoA carboxylase, carboxyltransferase component (Subunits alpha and beta); PFAM: Carboxyl transferase domain YP_003685562.1 COGs: COG0519 GMP synthase PP-ATPase domain/subunit; InterProIPR001317:IPR011063:IPR017926:IPR001674:IPR 004739:IPR011702:IPR006220:IPR000991:IPR014729; KEGG: ttj:TTHA1552 GMP synthase; PFAM: glutamine amidotransferase class-I; GMP synthase domain protein; PP-loop domain protein; SPTR: C1XQB3 GMP synthase (Glutamine-hydrolyzing); TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: Glutamine amidotransferase class-I; GMP synthase C terminal domain; PP-loop family; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit YP_003685563.1 KEGG: ttj:TTHA0720 hypothetical protein; SPTR: C1XQB2 Putative uncharacterized protein YP_003685564.1 KEGG: ttj:TTHA0719 hypothetical protein; SPTR: C1XQB1 Putative uncharacterized protein YP_003685565.1 COGs: COG1573 Uracil-DNA glycosylase; InterPro IPR005122:IPR005273; KEGG: tth:TTC0366 uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; SPTR: C1XQB0 Uracil-DNA glycosylase, family 4; TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase, family 4 YP_003685566.1 InterPro IPR000620; KEGG: dau:Daud_0439 hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: C1XQA9 Integral membrane protein DUF6; PFAM: EamA-like transporter family YP_003685567.1 COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR016161:IPR015590:IPR016162; KEGG: ddr:Deide_16070 putative succinate-semialdehyde dehydrogenase (NAD(P)(+)); PFAM: Aldehyde Dehydrogenase; PRIAM: Succinate-semialdehyde dehydrogenase; SPTR: C1XQA8 Succinate semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase family; TIGRFAM: succinate-semialdehyde dehydrogenase YP_003685568.1 COGs: COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); InterPro IPR011607:IPR013982:IPR002695; KEGG: dge:Dgeo_0513 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; PRIAM: IMP cyclohydrolase; SMART: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; SPTR: C1XQA7 IMP cyclohydrolase; phosphoribosylaminoimidazolecarboxamide formyltransferase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme; MGS-like domain; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_003685569.1 KEGG: scl:sce4134 polyketide synthase; SPTR: C1XQA6 Putative uncharacterized protein YP_003685570.1 InterPro IPR002559; KEGG: tth:TT_P0158 hypothetical protein; PFAM: transposase IS4 family protein; SPTR: C1XPN1 Transposase family protein; PFAM: Transposase DDE domain YP_003685571.1 InterPro IPR003789:IPR019004; KEGG: ttj:TTHA0864 hypothetical protein; PFAM: Protein of unknown function; SPTR: C1XQA3 Yqey-like protein; PFAM: Yqey-like protein YP_003685572.1 KEGG: cyt:cce_4711 hypothetical protein; SPTR: C1XWH5 Putative uncharacterized protein YP_003685573.1 InterPro IPR009057; KEGG: cyp:PCC8801_0371 hypothetical protein; SPTR: C1XQA1 Putative uncharacterized protein YP_003685574.1 COGs: COG1970 Large-conductance mechanosensitive channel; InterPro IPR001185:IPR019823; KEGG: ttj:TTHA0627 large-conductance mechanosensitive channel; PFAM: large-conductance mechanosensitive channel; SPTR: C1XQ99 Large conductance mechanosensitive channel protein; TIGRFAM: large conductance mechanosensitive channel protein; PFAM: Large-conductance mechanosensitive channel, MscL; TIGRFAM: large conductance mechanosensitive channel protein YP_003685575.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XQ98 Integrase family protein; PFAM: Integrase core domain YP_003685576.1 COGs: COG3839 ABC-type sugar transport systems ATPase components; InterProIPR008995:IPR003439:IPR017871:IPR005116:IPR 003593:IPR012340; KEGG: ttj:TTHA0579 sugar ABC transportor, ATP-binding protein; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; SPTR: C1XQ97 Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter; TOBE domain YP_003685577.1 COGs: COG0572 Uridine kinase; InterPro IPR017975:IPR006083:IPR000764:IPR003593; KEGG: ttj:TTHA0578 uridine kinase; PFAM: phosphoribulokinase/uridine kinase; SMART: AAA ATPase; SPTR: C1XQ96 Uridine kinase; TIGRFAM: uridine kinase; PFAM: Phosphoribulokinase / Uridine kinase family; TIGRFAM: uridine kinase YP_003685578.1 KEGG: tth:TTC0209 hypothetical protein; SPTR: C1XQ95 Putative uncharacterized protein YP_003685579.1 COGs: COG2327 conserved hypothetical protein; InterPro IPR019896:IPR007345; KEGG: ttj:TTHA0576 putative pyruvyl-transferase; PFAM: polysaccharide pyruvyl transferase; SPTR: C1XQ94 Uncharacterized conserved protein; TIGRFAM: polysaccharide pyruvyl transferase CsaB; PFAM: Polysaccharide pyruvyl transferase; TIGRFAM: polysaccharide pyruvyl transferase CsaB YP_003685580.1 KEGG: tth:TTC0207 hypothetical protein; SPTR: C1XQ93 Putative uncharacterized protein YP_003685581.1 COGs: COG2176 DNA polymerase III alpha subunit (gram-positive type); InterPro IPR012337:IPR006055:IPR013520:IPR006054; KEGG: ttj:TTHA0574 DNA polymerase III epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; PRIAM: DNA-directed DNA polymerase; SMART: Exonuclease; SPTR: C1XQ92 Exonuclease, DNA polymerase III, epsilon subunit family; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family YP_003685582.1 COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; InterPro IPR020556:IPR000120:IPR004412; KEGG: tth:TTC0205 aspartyl/glutamyl-tRNA amidotransferase subunit A; PFAM: Amidase; PRIAM: Amidase; SPTR: C1XQ91 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit YP_003685583.1 COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro IPR018022:IPR002627; KEGG: tth:TTC0204 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; PRIAM: tRNA isopentenyltransferase; SPTR: C1XQ90 tRNA Delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: IPP transferase; TIGRFAM: tRNA isopentenyltransferase (miaA) YP_003685584.1 COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR008978:IPR002068; KEGG: ttj:TTHA0571 small heat shock protein; PFAM: heat shock protein Hsp20; SPTR: C1XQ89 Molecular chaperone (Small heat shock protein); PFAM: Hsp20/alpha crystallin family YP_003685585.1 COGs: COG1435 Thymidine kinase; InterPro IPR020633:IPR001267; KEGG: dge:Dgeo_0578 thymidine kinase; PFAM: thymidine kinase; PRIAM: Thymidine kinase; SPTR: C1XQ88 Thymidine kinase; PFAM: Thymidine kinase YP_003685586.1 COGs: COG0254 Ribosomal protein L31; InterPro IPR002150; KEGG: dra:DR_0825 50S ribosomal protein L31; PFAM: ribosomal protein L31; SPTR: C1XQ87 50S ribosomal protein L31; TIGRFAM: ribosomal protein L31; PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31 YP_003685587.1 KEGG: ter:Tery_0028 hypothetical protein; SPTR: A7B483 Putative uncharacterized protein YP_003685588.1 KEGG: ppd:Ppro_2844 GreA/GreB family elongation factor; SPTR: C1XQ86 Putative uncharacterized protein YP_003685589.1 COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466:IPR012338; KEGG: sus:Acid_5000 beta-lactamase; PFAM: beta-lactamase; SPTR: C1XQ85 Penicillin-binding protein, beta-lactamase class C; PFAM: Beta-lactamase YP_003685590.1 COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: tth:TTC0371 iron(III) dicitrate-binding protein; PFAM: periplasmic binding protein; SPTR: C1XQ84 ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein YP_003685591.1 COGs: COG0237 Dephospho-CoA kinase; InterPro IPR001977; KEGG: ttj:TTHA0926 dephospho-CoA kinase (dephosphocoenzyme A kinase); PRIAM: Dephospho-CoA kinase; SPTR: C1XQ83 Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase YP_003685592.1 COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR002646:IPR006674:IPR006675:IPR003607; KEGG: dge:Dgeo_0612 metal dependent phosphohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: C1XQ82 Uncharacterized domain HDIG-containing protein; TIGRFAM: metal dependent phophohydrolase; PFAM: HD domain; Poly A polymerase head domain; TIGRFAM: uncharacterized domain HDIG YP_003685593.1 COGs: COG2340 Uncharacterized protein with SCP/PR1 domains; InterPro IPR014044:IPR001283; KEGG: pfo:Pfl01_2104 allergen V5/TPX-1-like; PFAM: SCP-like extracellular; SMART: Allergen V5/Tpx-1 family protein; SPTR: C1XQ81 SCP-like extracellular protein; PFAM: Cysteine-rich secretory protein family YP_003685594.1 COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR011041:IPR011042; KEGG: cag:Cagg_0415 NHL repeat-containing protein; SPTR: C1XQ80 Glucose/sorbosone dehydrogenase YP_003685595.1 COGs: COG0557 Exoribonuclease R; InterProIPR011805:IPR001900:IPR003029:IPR013223:IPR 012340:IPR016027:IPR004476; KEGG: ttj:TTHA0910 exoribonuclease; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; PRIAM: Exoribonuclease II; SPTR: C1XQ79 RNAse R; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: RNB domain; Ribonuclease B OB domain; S1 RNA binding domain; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonucleases YP_003685596.1 COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR005814:IPR015424:IPR015421; KEGG: tth:TTC0553 ornithine aminotransferase; PFAM: aminotransferase class-III; SPTR: C1XK59 Ornithine/acetylornithine aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: acetylornithine and succinylornithine aminotransferases YP_003685597.1 COGs: COG0824 thioesterase; InterPro IPR006683:IPR006684; KEGG: tth:TTC0552 esterase; PFAM: thioesterase superfamily protein; SPTR: C1XQ76 Putative uncharacterized protein; PFAM: Thioesterase superfamily; TIGRFAM: conserved hypothetical protein TIGR00051 YP_003685598.1 COGs: COG0858 Ribosome-binding factor A; InterPro IPR000238:IPR015946; KEGG: dge:Dgeo_1695 ribosome-binding factor A; PFAM: ribosome-binding factor A; SPTR: C1XQ75 Ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; PFAM: Ribosome-binding factor A; TIGRFAM: ribosome-binding factor A YP_003685599.1 COGs: COG1109 Phosphomannomutase; InterProIPR016066:IPR016055:IPR005844:IPR005845:IPR 005846:IPR005843:IPR006352:IPR005841; KEGG: ttj:TTHA1056 putative phosphoglucosamine mutase/phosphoacetylglucosamine mutase/phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; PRIAM: Phosphoglucosamine mutase; SPTR: C1XQ74 Phosphoglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; TIGRFAM: phosphoglucosamine mutase YP_003685600.1 COGs: COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains; InterProIPR019760:IPR020045:IPR012337:IPR020046:IPR 020047:IPR015361:IPR001098:IPR018320:IPR002421:IPR008918:I PR002298; KEGG: ttj:TTHA1054 DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; Taq polymerase thermostable exonuclease region; PRIAM: DNA-directed DNA polymerase; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; DNA-directed DNA polymerase; SPTR: C1XQ73 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: Taq polymerase, exonuclease; 5'-3' exonuclease, C-terminal SAM fold; 5'-3' exonuclease, N-terminal resolvase-like domain; DNA polymerase family A; TIGRFAM: DNA polymerase I YP_003685601.1 COGs: COG1739 conserved hypothetical protein; InterPro IPR020569:IPR020568:IPR001498:IPR009022; KEGG: tth:TTC0689 hypothetical protein; PFAM: protein of unknown function UPF0029; SPTR: C1XQ72 Uncharacterized conserved protein; PFAM: Uncharacterized protein family UPF0029; TIGRFAM: conserved hypothetical protein TIGR00257 YP_003685602.1 COGs: COG0169 Shikimate 5-dehydrogenase; InterPro IPR016040:IPR013708:IPR006151:IPR011342; KEGG: tth:TTC0688 shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; PRIAM: Shikimate dehydrogenase; SPTR: C1XQ71 Shikimate dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain; Shikimate / quinate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase YP_003685603.1 COGs: COG1030 Membrane-bound serine protease (ClpP class); InterPro IPR002810; KEGG: tth:TTC0687 putative protease/transporter; PFAM: protein of unknown function DUF107; SPTR: C1XQ70 Membrane-bound serine protease (ClpP class); PFAM: NfeD-like YP_003685604.1 COGs: COG4864 conserved hypothetical protein; KEGG: ttj:TTHA1048 hypothetical protein; SPTR: C1XQ69 Uncharacterized conserved protein; PFAM: SigmaW regulon antibacterial YP_003685605.1 KEGG: ttj:TTHA1047 hypothetical protein; SPTR: B7AAB0 Putative uncharacterized protein YP_003685606.1 COGs: COG1702 Phosphate starvation-inducible protein PhoH predicted ATPase; InterPro IPR003714; KEGG: tth:TTC0684 PhoH protein; PFAM: PhoH family protein; SPTR: C1XQ67 Phosphate starvation-inducible protein PhoH, predicted ATPase; PFAM: PhoH-like protein YP_003685607.1 COGs: COG0319 metal-dependent hydrolase; InterPro IPR002036; KEGG: dra:DR_2092 hypothetical protein; PFAM: protein of unknown function UPF0054; SPTR: C1XQ66 Putative uncharacterized protein; PFAM: Uncharacterized protein family UPF0054; TIGRFAM: conserved hypothetical protein TIGR00043 YP_003685608.1 COGs: COG0818 Diacylglycerol kinase; InterPro IPR000829; KEGG: ttj:TTHA1044 diacylglycerol kinase; PFAM: diacylglycerol kinase; SPTR: C1XJH3 Diacylglycerol kinase; PFAM: Prokaryotic diacylglycerol kinase YP_003685609.1 COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR000644:IPR002550:IPR005170; KEGG: npu:Npun_F5495 hypothetical protein; PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; SPTR: C1XQ64 CBS domain-containing protein; PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain YP_003685610.1 COGs: COG0295 Cytidine deaminase; InterPro IPR002125:IPR016193:IPR016192:IPR006262; KEGG: bid:Bind_3099 cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; SPTR: C1XQ63 Cytidine deaminase, homotetrameric; TIGRFAM: cytidine deaminase; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: cytidine deaminase, homotetrameric YP_003685611.1 KEGG: ttj:TTHA0736 hypothetical protein; SPTR: C1XHZ7 Putative uncharacterized protein YP_003685612.1 COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR002220:IPR020625:IPR013785; KEGG: ttj:TTHA0737 putative dihidrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; SPTR: C1XQ60 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; PFAM: Dihydrodipicolinate synthetase family YP_003685613.1 InterPro IPR017868; KEGG: ttj:TTHA0738 hypothetical protein; SPTR: C1XQ59 Putative uncharacterized protein YP_003685614.1 COGs: COG0782 Transcription elongation factor; InterPro IPR001437:IPR006359; KEGG: ttj:TTHA0622 transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; SPTR: C1XQ58 Transcription elongation factor; TIGRFAM: transcription elongation factor GreA; PFAM: domain; Transcription elongation factor, GreA/GreB, C-term; TIGRFAM: transcription elongation factor GreA YP_003685615.1 COGs: COG0053 Co/Zn/Cd cation transporter; InterPro IPR002524; KEGG: tth:TTC0678 cadmium-zinc resistance protein CzrB; PFAM: cation efflux protein; SPTR: C1XQ57 Cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter YP_003685616.1 COGs: COG1190 Lysyl-tRNA synthetase (class II); InterProIPR018149:IPR002313:IPR004365:IPR012340:IPR 016027:IPR004364:IPR006195; KEGG: ttj:TTHA1041 lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; SPTR: C1XQ56 Lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial YP_003685617.1 COGs: COG0782 Transcription elongation factor; InterPro IPR018151:IPR001437; KEGG: ttj:TTHA1042 anti-cleavage anti-GreA transcription factor Gfh1; PFAM: transcription elongation factor GreA/GreB domain protein; SPTR: C1XQ55 Transcription elongation factor; PFAM: domain; Transcription elongation factor, GreA/GreB, C-term YP_003685618.1 KEGG: tth:TTC0681 hypothetical protein; SPTR: C1XQ54 Putative uncharacterized protein YP_003685619.1 InterPro IPR000835:IPR011991; KEGG: ttj:TTHA0733 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1XQ53 Transcriptional regulator; PFAM: MarR family YP_003685620.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: ttj:TTHA0732 hypothetical protein; PFAM: outer membrane efflux protein; SPTR: C1XQ52 Outer membrane protein; PFAM: Outer membrane efflux protein YP_003685621.1 InterPro IPR003423; KEGG: ttj:TTHA0731 hypothetical protein; PFAM: outer membrane efflux protein; SPTR: C1XQ51 Outer membrane efflux protein; PFAM: Outer membrane efflux protein YP_003685622.1 COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: dge:Dgeo_2117 secretion protein HlyD; PFAM: secretion protein HlyD family protein; SPTR: C1XQ50 RND family efflux transporter, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_003685623.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: tth:TTC0377 acriflavin resistance protein B; PFAM: acriflavin resistance protein; SPTR: C1XQ49 Cation/multidrug efflux pump; PFAM: AcrB/AcrD/AcrF family YP_003685624.1 KEGG: bgl:bglu_2g13160 hypothetical protein; SPTR: C1XQ48 Putative uncharacterized protein YP_003685625.1 KEGG: ttj:TTHA0728 hypothetical protein; SPTR: C1XQ47 Putative uncharacterized protein YP_003685626.1 InterPro IPR011701:IPR016196; KEGG: chl:Chy400_1727 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: C1XQ46 Major facilitator superfamily permease; PFAM: Major Facilitator Superfamily YP_003685627.1 COGs: COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster; InterProIPR014021:IPR001650:IPR011545:IPR018973:IPR 014001; KEGG: ttj:TTHA1257 putative helicase; PFAM: Protein of unknown function DUF1998; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: C1XQ45 Helicase family protein with metal-binding cysteine cluster; PFAM: Helicase conserved C-terminal domain; Domain of unknown function (DUF1998); DEAD/DEAH box helicase YP_003685628.1 COGs: COG3263 NhaP-type Na+/H+ and K+/H+ antiporter with a unique C-terminal domain; InterPro IPR006153; KEGG: tth:TTC0563 cell volume regulation protein CvrA; PFAM: sodium/hydrogen exchanger; SPTR: C1XQ44 NhaP-type Na+(K+)/H+ antiporter; PFAM: Sodium/hydrogen exchanger family YP_003685629.1 COGs: COG0486 GTPase; InterProIPR018948:IPR002917:IPR006073:IPR005225:IPR 004520; KEGG: ttj:TTHA0931 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE-like; GTP-binding protein HSR1-related; SPTR: C1XQ42 tRNA modification GTPase trmE; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTPase of unknown function; GTP-binding protein TrmE N-terminus; TIGRFAM: small GTP-binding protein domain; tRNA modification GTPase TrmE YP_003685630.1 COGs: COG4651 Kef-type K+ transport system predicted NAD-binding component; InterPro IPR016040:IPR003148:IPR006153; KEGG: ttj:TTHA0822 potassium efflux transporter; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; SPTR: C1XQ41 Kef-type K+ transport system, predicted NAD-binding component; PFAM: TrkA-N domain; Sodium/hydrogen exchanger family YP_003685631.1 InterPro IPR007452; KEGG: tth:TTC0200 hypothetical protein; PFAM: protein of unknown function DUF490; SPTR: C1XQ40 Uncharacterized conserved protein; PFAM: Family of unknown function (DUF490) YP_003685632.1 COGs: COG1254 Acylphosphatase; InterPro IPR001792; KEGG: ttj:TTHA0567 acylphosphatase; PFAM: acylphosphatase; SPTR: C1XQ39 Acylphosphatase; PFAM: Acylphosphatase YP_003685633.1 COGs: COG2262 GTPase; InterPro IPR002917:IPR016496:IPR006073; KEGG: tth:TTC0198 GTP-binding protein HflX; PFAM: GTP-binding protein HSR1-related; SPTR: C1XQ38 GTP-binding protein HflX; TIGRFAM: GTP-binding proten HflX; PFAM: GTPase of unknown function; TIGRFAM: GTP-binding protein HflX; small GTP-binding protein domain YP_003685634.1 COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR005834:IPR006402:IPR006439; KEGG: saz:Sama_0499 HAD superfamily hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: C1XQ37 Haloacid dehalogenase superfamily enzyme, subfamily IA; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E YP_003685635.1 COGs: COG1434 conserved hypothetical protein; InterPro IPR003848; KEGG: ttj:TTHA0565 hypothetical protein; PFAM: protein of unknown function DUF218; SPTR: C1XQ34 Uncharacterized conserved protein; PFAM: DUF218 domain YP_003685636.1 InterPro IPR019933:IPR007793; KEGG: ttj:TTHA0564 cell division initiation protein DivIVA; PFAM: DivIVA family protein; SPTR: C1XQ33 DivIVA protein; TIGRFAM: DivIVA domain; PFAM: DivIVA protein; TIGRFAM: DivIVA domain YP_003685637.1 COGs: COG0325 enzyme with a TIM-barrel fold; InterPro IPR011078:IPR001608; KEGG: tth:TTC0195 hypothetical protein; PFAM: alanine racemase domain protein; SPTR: C1XQ32 Pyridoxal phosphate enzyme, YggS family; PFAM: Alanine racemase, N-terminal domain; TIGRFAM: pyridoxal phosphate enzyme, YggS family YP_003685638.1 COGs: COG0005 Purine nucleoside phosphorylase; InterPro IPR000845:IPR011268; KEGG: ttj:TTHA0562 purine nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1; SPTR: C1XQ31 Inosine guanosine and xanthosine phosphorylase family protein; TIGRFAM: inosine guanosine and xanthosine phosphorylase family; PFAM: Phosphorylase superfamily; TIGRFAM: purine nucleoside phosphorylase I, inosine and guanosine-specific; inosine guanosine and xanthosine phosphorylase family YP_003685639.1 COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827:IPR000184; KEGG: ttj:TTHA0561 outer membrane protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; SPTR: C1XQ30 Outer membrane protein/protective antigen OMA87; PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein YP_003685640.1 KEGG: ttj:TTHA1258 hypothetical protein; SPTR: C1XQ29 Putative uncharacterized protein YP_003685641.1 COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain); InterPro IPR001054; KEGG: ttj:TTHA1259 adenylate cyclase related protein; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; SPTR: C1XQ28 Family 3 adenylate cyclase; PFAM: Adenylate and Guanylate cyclase catalytic domain YP_003685642.1 COGs: COG0358 DNA primase; InterProIPR002694:IPR013264:IPR006171:IPR006295:IPR 006154; KEGG: tth:TTC0896 DNA primase; PFAM: DNA primase catalytic core domain; zinc finger CHC2-family protein; TOPRIM domain protein; SMART: zinc finger CHC2-family protein; Toprim sub domain protein; SPTR: C1XQ27 DNA primase; TIGRFAM: DNA primase; PFAM: Toprim domain; CHC2 zinc finger; DNA primase catalytic core, N-terminal domain; TIGRFAM: DNA primase, catalytic core YP_003685643.1 COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: ddr:Deide_17010 putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; SPTR: C1XQ26 Transcriptional regulator, BadM/Rrf2 family; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein (putative transcriptional regulator) YP_003685644.1 COGs: COG2897 Rhodanese-related sulfurtransferase; InterPro IPR001763:IPR001307; KEGG: ttj:TTHA1028 thiosulfate sulfurtransferase; PFAM: Rhodanese domain protein; PRIAM: Thiosulfate sulfurtransferase; SMART: Rhodanese domain protein; SPTR: C1XQ25 Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain YP_003685645.1 COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: tth:TTC0487 putative transferase/hydrolase; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: C1XQ24 Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain YP_003685646.1 COGs: COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); InterProIPR013816:IPR006275:IPR005480:IPR013817:IPR 005479:IPR016185:IPR005483:IPR005481:IPR011761; KEGG: ttj:TTHA0612 carbamoyl phosphate synthase large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; SPTR: C1XQ23 Carbamoyl-phosphate synthase large subunit; TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type; carbamoyl-phosphate synthase, large subunit YP_003685647.1 KEGG: hba:Hbal_2714 TonB-dependent receptor; SPTR: C1XQ22 Putative uncharacterized protein YP_003685648.1 COGs: COG0335 Ribosomal protein L19; InterPro IPR001857; KEGG: ttj:TTHA1031 50S ribosomal protein L19; PFAM: ribosomal protein L19; SPTR: C1XQ21 50S ribosomal protein L19; TIGRFAM: ribosomal protein L19; PFAM: Ribosomal protein L19; TIGRFAM: ribosomal protein L19, bacterial type YP_003685649.1 COGs: COG0336 tRNA-(guanine-N1)-methyltransferase; InterPro IPR016009:IPR002649; KEGG: tth:TTC0670 tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; PRIAM: tRNA (guanine-N(1)-)-methyltransferase; SPTR: C1XQ20 tRNA (guanine-N(1)-)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (Guanine-1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase YP_003685650.1 COGs: COG0806 RimM protein required for 16S rRNA processing; InterPro IPR011033:IPR011961:IPR002676:IPR007903; KEGG: tth:TTC0671 16S rRNA-processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; SPTR: C1XQ19 16S rRNA processing protein RimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: PRC-barrel domain; RimM N-terminal domain; TIGRFAM: 16S rRNA processing protein RimM YP_003685651.1 COGs: COG1837 RNA-binding protein (contains KH domain); KEGG: ttj:TTHA1034 hypothetical protein; SPTR: C1XQ18 RNA-binding protein (KH domain) YP_003685652.1 COGs: COG0228 Ribosomal protein S16; InterPro IPR000307; KEGG: ttj:TTHA1035 30S ribosomal protein S16; PFAM: ribosomal protein S16; SPTR: C1XQ17 SSU ribosomal protein S16P; TIGRFAM: ribosomal protein S16; PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16 YP_003685653.1 COGs: COG0541 Signal recognition particle GTPase; InterProIPR004125:IPR013822:IPR000897:IPR004780:IPR 003593; KEGG: ttj:TTHA1036 signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; SPTR: C1XQ16 Signal recognition particle subunit FFH/SRP54 (Srp54); TIGRFAM: signal recognition particle protein; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle protein YP_003685654.1 InterPro IPR005183; KEGG: ddr:Deide_2p01090 hypothetical protein; PFAM: protein of unknown function DUF305; SPTR: C1XQ15 Uncharacterized conserved protein; PFAM: Domain of unknown function (DUF305) YP_003685655.1 COGs: COG3544 conserved hypothetical protein; InterPro IPR005183; KEGG: dge:Dgeo_0086 hypothetical protein; PFAM: protein of unknown function DUF305; SPTR: C1XQ14 Uncharacterized conserved protein; PFAM: Domain of unknown function (DUF305) YP_003685656.1 COGs: COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain); InterProIPR000644:IPR006669:IPR006667:IPR006668:IPR 013785:IPR011002; KEGG: ttj:TTHA1060 Mg2+ transporter MgtE; PFAM: MgtE integral membrane region; CBS domain containing protein; MgtE intracellular region; SMART: CBS domain containing protein; SPTR: C1XQ13 Mg2+ transporter MgtE; TIGRFAM: magnesium transporter; PFAM: MgtE intracellular N domain; CBS domain; Divalent cation transporter; TIGRFAM: Mg2+ transporter (mgtE) YP_003685657.1 InterPro IPR002559; KEGG: ddr:Deide_3p01971 putative transposase; PFAM: transposase IS4 family protein; SPTR: C1XQ12 Transposase family protein YP_003685658.1 KEGG: cth:Cthe_3186 radical SAM family protein; SPTR: C1XQ11 Putative uncharacterized protein YP_003685659.1 SPTR: C1XQ08 Putative uncharacterized protein YP_003685660.1 COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; InterPro IPR006035:IPR020855; KEGG: dge:Dgeo_2732 arginase/agmatinase/formiminoglutamase; PFAM: Arginase/agmatinase/formiminoglutamase; SPTR: C1XQ06 Arginase family hydrolase, arginase/agmainase/formiminoglutamate hydrolase; PFAM: Arginase family; TIGRFAM: agmatinase YP_003685661.1 COGs: COG3173 aminoglycoside phosphotransferase; InterPro IPR011009:IPR002575; KEGG: hoh:Hoch_2064 aminoglycoside phosphotransferase; PFAM: aminoglycoside phosphotransferase; SPTR: C1XQ05 Predicted aminoglycoside phosphotransferase; PFAM: Phosphotransferase enzyme family YP_003685662.1 COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR013786:IPR006091:IPR006090:IPR009100:IPR 013764:IPR006092:IPR009075; KEGG: rmr:Rmar_2207 acyl-CoA dehydrogenase domain protein; PFAM: acyl-CoA dehydrogenase domain protein; PRIAM: Butyryl-CoA dehydrogenase; SPTR: C1XQ04 Acyl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain YP_003685663.1 InterPro IPR011528; KEGG: tth:TTC1537 hypothetical protein; PFAM: NERD domain protein; SPTR: C1XQ03 Nuclease-like protein; PFAM: Nuclease-related domain YP_003685664.1 COGs: COG1214 Inactive homolog of metal-dependent protease putative molecular chaperone; InterPro IPR000905; KEGG: ttj:TTHA0375 putative glycoprotein endopeptidase; PFAM: peptidase M22 glycoprotease; SPTR: C1XQ02 Putative molecular chaperone similar to inactive metal-dependent protease; PFAM: Glycoprotease family YP_003685665.1 COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterProIPR000943:IPR005479:IPR013325:IPR013324:IPR 009042:IPR007627:IPR007624:IPR007630:IPR014284:IPR012760:I PR011991; KEGG: ttj:TTHA0532 RNA polymerase pricipal sigma factor (RpoD); PFAM: sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 3 domain protein; sigma-70 region 4 domain protein; SPTR: C1XPZ8 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor RpoD, C-terminal domain YP_003685666.1 COGs: COG2258 conserved hypothetical protein; InterPro IPR011037:IPR005302:IPR015808; KEGG: tth:TTC0963 hypothetical protein; PFAM: MOSC domain containing protein; SPTR: C1XPZ7 Uncharacterized conserved protein; PFAM: MOSC domain YP_003685667.1 KEGG: NCKAP5; NCK-associated protein 5; SPTR: C1XPZ5 Putative uncharacterized protein YP_003685668.1 COGs: COG2166 SufE protein probably involved in Fe-S center assembly; InterPro IPR003808; KEGG: ttj:TTHA0761 iron-sulfur cluster biosynthesis protein SufE; PFAM: Fe-S metabolism associated SufE; SPTR: C1XPZ4 SufE protein probably involved in Fe-S center assembly; PFAM: Fe-S metabolism associated domain YP_003685669.1 COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR017871:IPR003439:IPR003593; KEGG: ddr:Deide_16130 putative ABC transporter, ATP-binding component with duplicated ATPase domains; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XPZ3 ATPase component of ABC transporters with duplicated ATPase domain; PFAM: ABC transporter YP_003685670.1 COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: sco:SCP1.259 putative transposon transposase; PFAM: transposase mutator type; SPTR: C1XP69 Transposase; PFAM: Transposase, Mutator family YP_003685671.1 COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; KEGG: mpo:Mpop_0224 ABC transporter related; SPTR: C1XPZ1 Putative uncharacterized protein YP_003685672.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XPY9 Integrase family protein; PFAM: Integrase core domain YP_003685673.1 COGs: COG2206 HD-GYP domain; InterPro IPR003660:IPR003607:IPR006674; KEGG: aac:Aaci_0362 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; histidine kinase HAMP region domain protein; SMART: metal-dependent phosphohydrolase HD region; histidine kinase HAMP region domain protein; SPTR: C1XPY8 HD-GYP domain-containing protein; PFAM: HD domain; HAMP domain; TIGRFAM: uncharacterized domain HDIG YP_003685674.1 COGs: COG2508 Regulator of polyketide synthase expression; KEGG: tth:TTC0590 hypothetical protein; SPTR: C1XPY7 Putative uncharacterized protein; TIGRFAM: prevent-host-death family protein YP_003685675.1 COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterProIPR005263:IPR002220:IPR012691:IPR020625:IPR 013785; KEGG: tth:TTC0591 dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; SPTR: C1XPY6 Dihydrodipicolinate synthase; TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase family; TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; dihydrodipicolinate synthase YP_003685676.1 COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR011234:IPR002529:IPR012684; KEGG: dra:DR_A0226 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase/5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate decarboxylase; PFAM: fumarylacetoacetate (FAA) hydrolase; PRIAM: 5-carboxymethyl-2-hydroxymuconate Delta-isomerase; SPTR: C1XPY5 5-carboxy-2-oxohept-3-enedioate decarboxylase HpaG2 subunit; TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit; PFAM: Fumarylacetoacetate (FAA) hydrolase family; TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit YP_003685677.1 KEGG: dge:Dgeo_0593 hypothetical protein; SPTR: C1XPY4 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3293) YP_003685678.1 COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterProIPR016160:IPR016161:IPR015590:IPR011985:IPR 016162; KEGG: ttj:TTHA0959 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenaseiheyensis HTE831; PFAM: Aldehyde Dehydrogenase; PRIAM: Betaine-aldehyde dehydrogenase; SPTR: C1XPY3 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; TIGRFAM: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase family; TIGRFAM: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase YP_003685679.1 COGs: COG2368 Aromatic ring hydroxylase; InterPro IPR012687:IPR004925:IPR006091:IPR013764; KEGG: tth:TTC0594 4-hydroxyphenylacetate 3-monooxygenase; PFAM: 4-hydroxyphenylacetate 3-hydroxylase; PRIAM: Vinylacetyl-CoA Delta-isomerase; SPTR: C1XPY2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component; TIGRFAM: 4-hydroxyphenylacetate 3-monooxygenase, oxygenase subunit; PFAM: 4-hydroxyphenylacetate 3-hydroxylase N terminal; 4-hydroxyphenylacetate 3-hydroxylase C terminal; TIGRFAM: 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component YP_003685680.1 COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family; InterPro IPR009002:IPR012349:IPR002563; KEGG: tth:TTC0595 oxidoreductase; PFAM: flavin reductase domain protein FMN-binding; SMART: flavin reductase domain protein FMN-binding; SPTR: C1XPY1 Conserved protein of DIM6/NTAB family, COG1853; PFAM: Flavin reductase like domain YP_003685681.1 InterPro IPR004360:IPR000486:IPR011981; KEGG: dge:Dgeo_2419 3,4-dihydroxyphenylacetate 2,3-dioxygenase HpaD; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: C1XPY0 3,4-dihydroxyphenylacetate 2,3-dioxygenase; TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase YP_003685682.1 COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterProIPR006180:IPR016040:IPR008927:IPR006176:IPR 006108:IPR013328; KEGG: sth:STH214 3-hydroxy-acyl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; PRIAM: 3-hydroxybutyryl-CoA dehydrogenase; SPTR: C1XPX9 3-hydroxyacyl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YP_003685683.1 COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: tth:TTC0597 leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein; PFAM: Extracellular ligand-binding receptor; SPTR: C1XPX8 ABC-type branched-chain amino acid transport system, periplasmic component; PFAM: Receptor family ligand binding region YP_003685684.1 COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: tth:TTC0598 branched-chain amino acid transport system permease protein LivH; PFAM: inner-membrane translocator; SPTR: C1XPX7 Branched-chain amino acid ABC-type transport system, permease component; PFAM: Branched-chain amino acid transport system / permease component YP_003685685.1 COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR001851:IPR003593:IPR003439; KEGG: tth:TTC0599 branched-chain amino acid transport system permease protein LivM/branched-chain amino acid transport ATP-binding protein LivG; PFAM: ABC transporter related; inner-membrane translocator; SMART: AAA ATPase; SPTR: C1XPX6 ABC-type branched-chain amino acid transport systems, ATPase component; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter; Branched-chain amino acid transport system / permease component YP_003685686.1 COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: tth:TTC0600 branched-chain amino acid transport ATP-binding protein LivF; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XPX5 ABC-type branched-chain amino acid transport systems, ATPase component; PFAM: ABC transporter YP_003685687.1 COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683:IPR003736:IPR011973; KEGG: tth:TTC0601 phenylacetic acid degradation protein; PFAM: thioesterase superfamily protein; SPTR: C1XPX4 Phenylacetic acid degradation protein PaaD; TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1; phenylacetic acid degradation protein PaaD YP_003685688.1 COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR016039:IPR016038:IPR002155; KEGG: tth:TTC0623 beta-ketoadipyl CoA thiolase; SPTR: C1XPX3 Acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases; beta-ketoadipyl CoA thiolase YP_003685689.1 COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR000873; KEGG: ttj:TTHA0966 phenylacetyl-CoA ligase; PFAM: AMP-dependent synthetase and ligase; PRIAM: Phenylacetate--CoA ligase; SPTR: C1XPX2 Phenylacetate-CoA ligase; PFAM: AMP-binding enzyme; TIGRFAM: phenylacetate-CoA ligase YP_003685690.1 COGs: COG5496 thioesterase; KEGG: ttj:TTHA0967 hypothetical protein; SPTR: C1XPX1 Thioesterase superfamily YP_003685691.1 COGs: COG2802 Uncharacterized protein similar to the N-terminal domain of Lon protease; InterPro IPR003111; KEGG: fal:FRAAL2215 putative endopeptidase; PFAM: peptidase S16 lon domain protein; SMART: peptidase S16 lon domain protein; SPTR: C1XPX0 Peptidase S16, lon domain protein; PFAM: ATP-dependent protease La (LON) domain YP_003685692.1 COGs: COG2909 ATP-dependent transcriptional regulator protein; InterPro IPR001440:IPR011990:IPR019734:IPR013026; KEGG: tth:TTC0344 hypothetical protein; PFAM: TPR repeat-containing protein; SPTR: C1XPW9 ATP-dependent transcriptional regulator; PFAM: Tetratricopeptide repeat YP_003685693.1 COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); InterPro IPR013747:IPR016039:IPR016038:IPR013751; KEGG: tth:TTC0343 hypothetical protein; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; SPTR: C1XPW8 3-oxoacyl-(Acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_003685694.1 COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR020845:IPR000873; KEGG: tth:TTC0342 acyl-CoA ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: C1XPW7 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; PFAM: AMP-binding enzyme YP_003685695.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000639:IPR000073; KEGG: tth:TTC0341 putative hydrolase; PFAM: alpha/beta hydrolase fold; SPTR: C1XPW6 Predicted hydrolase or acyltransferase of alpha/beta superfamily; PFAM: alpha/beta hydrolase fold YP_003685696.1 COGs: COG2030 Acyl dehydratase; InterPro IPR002539; KEGG: tth:TTC0339 (R)-specific enoyl-CoA hydratase/MaoC family protein; PFAM: MaoC domain protein dehydratase; SPTR: C1XPW5 Acyl dehydratase; PFAM: MaoC like domain YP_003685697.1 COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: tth:TTC0338 leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein; PFAM: Extracellular ligand-binding receptor; SPTR: C1XPW4 ABC-type branched-chain amino acid transport system, periplasmic component; PFAM: Receptor family ligand binding region YP_003685698.1 COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: tth:TTC0337 branched-chain amino acid transport system permease protein LivH; PFAM: inner-membrane translocator; SPTR: C1XPW3 Branched-chain amino acid ABC-type transport system, permease component; PFAM: Branched-chain amino acid transport system / permease component YP_003685699.1 COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: tth:TTC0336 branched amino acid transport system permease; PFAM: inner-membrane translocator; SPTR: C1XPW2 ABC-type branched-chain amino acid transport system, permease component; PFAM: Branched-chain amino acid transport system / permease component YP_003685700.1 COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439:IPR003593; KEGG: tth:TTC0335 branched-chain amino acid transport ATP-binding protein LivG; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XPW1 ABC-type branched-chain amino acid transport systems, ATPase component; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter YP_003685701.1 COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: ttj:TTHA0694 branched-chain amino acid ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XPW0 ABC-type branched-chain amino acid transport systems, ATPase component; PFAM: ABC transporter YP_003685702.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198:IPR016040:IPR011294:IPR002347; KEGG: ttj:TTHA0693 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: C1XPV9 3-hydroxybutyrate dehydrogenase; TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short chain dehydrogenase; TIGRFAM: 3-hydroxybutyrate dehydrogenase YP_003685703.1 SPTR: C1XPV8 Putative uncharacterized protein YP_003685704.1 KEGG: similar to predicted protein; K00939 adenylate kinase; SPTR: C1XPV7 Putative uncharacterized protein YP_003685705.1 COGs: COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation; InterPro IPR002218:IPR004417; KEGG: ttj:TTHA1442 tRNA (uracil-5-)-methyltransferase Gid; PFAM: glucose-inhibited division protein A; PRIAM:Methylenetetrahydrofolate--tRNA-(uracil-5-)-m ethyltransferase(FADH(2)-oxidizing); SPTR: C1XPV6 tRNA:m(5)U-54 methyltransferase; TIGRFAM: gid protein; PFAM: Glucose inhibited division protein A; TIGRFAM: tRNA:m(5)U-54 methyltransferase YP_003685706.1 KEGG: sml:Smlt2865 putative haemagglutinin-related protein; SPTR: C1XPV5 Putative uncharacterized protein YP_003685707.1 KEGG: psp:PSPPH_0216 hypothetical protein; SPTR: C1XPV4 Putative uncharacterized protein YP_003685708.1 COGs: COG5605 small integral membrane protein; KEGG: rhi:NGR_c25560 cytochrome c oxidase, subunit IV; SPTR: C1XPV3 Predicted small integral membrane protein, COG5605; TIGRFAM: caa(3)-type oxidase, subunit IV YP_003685709.1 COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; InterPro IPR000298; KEGG: pol:Bpro_0729 cytochrome c oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; SPTR: C1XPV2 Heme/copper-type cytochrome/quinol oxidase, subunit 3; PFAM: Cytochrome c oxidase subunit III YP_003685710.1 COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; InterPro IPR000298:IPR013833; KEGG: mlo:mlr1042 cytochrome c oxidase subunit III; SPTR: C1XPV1 Heme/copper-type cytochrome/quinol oxidase, subunit 3; PFAM: Cytochrome c oxidase subunit III YP_003685711.1 COGs: COG0843 Heme/copper-type cytochrome/quinol oxidase subunit 1; InterPro IPR000883:IPR014241; KEGG: bja:bll3784 cytochrome c oxidase; PFAM: cytochrome c oxidase subunit I; PRIAM: Cytochrome-c oxidase; SPTR: C1XPV0 Cytochrome c oxidase, subunit I; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, subunit I YP_003685712.1 COGs: COG1622 Heme/copper-type cytochrome/quinol oxidase subunit 2; InterPro IPR002429:IPR001505:IPR008972; KEGG: cti:RALTA_B1782 cytochrome c oxidase, subunit II:cytochrome c, class I; PFAM: cytochrome c oxidase subunit II; SPTR: C1XPU9 Cytochrome c oxidase subunit 2; PFAM: Cytochrome C oxidase subunit II, periplasmic domain; TIGRFAM: cytochrome c oxidase, subunit II YP_003685713.1 InterPro IPR019587; KEGG: phe:Phep_2623 cyclase/dehydrase; PFAM: Polyketide cyclase/dehydrase; SPTR: C1XPU8 Polyketide cyclase / dehydrase family protein; PFAM: Polyketide cyclase / dehydrase and lipid transport YP_003685714.1 COGs: COG0503 Adenine/guanine phosphoribosyltransferase and related PRPP-binding protein; InterPro IPR000836; KEGG: ttj:TTHA1613 adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; SPTR: C1XPU7 PRPP-binding protein, adenine/guanine phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain YP_003685715.1 COGs: COG0503 Adenine/guanine phosphoribosyltransferase and related PRPP-binding protein; InterPro IPR000836; KEGG: ttj:TTHA1614 adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; SPTR: C1XPU6 PRPP-binding protein, adenine/guanine phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain YP_003685716.1 COGs: COG1259 conserved hypothetical protein; InterPro IPR003729; KEGG: ttj:TTHA1615 hypothetical protein; PFAM: protein of unknown function DUF151; SPTR: C1XPU5 Uncharacterized conserved protein; PFAM: Uncharacterised ACR, COG1259 YP_003685717.1 InterPro IPR004843; KEGG: tth:TTC1252 acid phosphatase; PFAM: metallophosphoesterase; SPTR: C1XPU4 Calcineurin-like phosphoesterase; PFAM: Calcineurin-like phosphoesterase YP_003685718.1 COGs: COG0621 2-methylthioadenine synthetase; InterProIPR002792:IPR013848:IPR007197:IPR005839:IPR 006467:IPR006638:IPR013785; KEGG: ttj:TTHA1618 hypothetical protein; PFAM: Protein of unknown function UPF0004 ; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: C1XPU3 MiaB-like tRNA modifying enzyme; TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family YP_003685719.1 COGs: COG1171 Threonine dehydratase; InterPro IPR000634:IPR001926; KEGG: ttj:TTHA0279 putative threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: C1XPU2 L-threonine ammonia-lyase; PFAM: Pyridoxal-phosphate dependent enzyme YP_003685720.1 KEGG: ttj:TTHA1529 hypothetical protein; SPTR: C1XPU1 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF664) YP_003685721.1 COGs: COG2311 membrane protein; InterPro IPR007299:IPR007349; KEGG: gtn:GTNG_0601 hypothetical protein; PFAM: protein of unknown function DUF405; protein of unknown function DUF418; SPTR: C1XPU0 Predicted membrane protein, COG2311; PFAM: Protein of unknown function (DUF418) YP_003685722.1 COGs: COG0505 Carbamoylphosphate synthase small subunit; InterProIPR001317:IPR006274:IPR017926:IPR002474:IPR 011702:IPR006220:IPR000991; KEGG: ttj:TTHA0280 carbamoyl phosphate synthase small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; SPTR: C1XPT9 Carbamoyl-phosphate synthase small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain; Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit YP_003685723.1 KEGG: ttj:TTHA1287 hypothetical protein; SPTR: C1XPT8 Putative uncharacterized protein YP_003685724.1 COGs: COG1246 N-acetylglutamate synthase and related acetyltransferase; InterPro IPR000182:IPR016181; KEGG: ttj:TTHA0282 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: C1XPT7 N-acetylglutamate synthase; PFAM: Acetyltransferase (GNAT) family YP_003685725.1 COGs: COG0165 Argininosuccinate lyase; InterProIPR020557:IPR008948:IPR000362:IPR009049:IPR 003031; KEGG: ttj:TTHA0283 argininosuccinate lyase; PFAM: fumarate lyase; SPTR: C1XPT6 Argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: Lyase; TIGRFAM: argininosuccinate lyase YP_003685726.1 InterPro IPR000182:IPR016181; KEGG: hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: C1XPT5 Acetyltransferase, N-acetylglutamate synthase; PFAM: Acetyltransferase (GNAT) family YP_003685727.1 COGs: COG0137 Argininosuccinate synthase; InterPro IPR018223:IPR001518:IPR014729; KEGG: ttj:TTHA0284 argininosuccinate synthase; PFAM: argininosuccinate synthase; PRIAM: Argininosuccinate synthase; SPTR: C1XPT4 Argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase YP_003685728.1 InterPro IPR012337:IPR002559; KEGG: cau:Caur_2446 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: C1XPT2 Transposase family protein; PFAM: Transposase DDE domain YP_003685729.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: rxy:Rxyl_1060 diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; SPTR: C1XPT0 Diguanylate cyclase (GGDEF) domain-containing protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_003685730.1 COGs: COG0141 Histidinol dehydrogenase; InterPro IPR016161:IPR012131:IPR001692; KEGG: tth:TTC0370 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase; PRIAM: Histidinol dehydrogenase; SPTR: C1XPS9 Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; PFAM: Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase YP_003685731.1 KEGG: ttj:TTHA0721 hypothetical protein; SPTR: C1XPS8 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3108) YP_003685732.1 InterPro IPR015919; KEGG: gau:GAU_2472 hypothetical protein; SPTR: C1XPS7 Putative uncharacterized protein YP_003685733.1 InterPro IPR012902:IPR001120; KEGG: dge:Dgeo_2111 putative pilin, type IV; SPTR: C1XPS4 Prepilin-type N-terminal cleavage/methylation domain-containing protein; PFAM: Prokaryotic N-terminal methylation motif; Type II transport protein GspH; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; general secretion pathway protein H YP_003685734.1 InterPro IPR012902:IPR001120; KEGG: dge:Dgeo_2110 putative pilin, type IV; SPTR: C1XPS3 Prepilin-type N-terminal cleavage/methylation domain-containing protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_003685735.1 InterPro IPR012902; KEGG: dra:DR_1234 hypothetical protein; SPTR: C1XPS2 Putative uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_003685736.1 COGs: COG0481 Membrane GTPase LepA; InterProIPR000795:IPR009022:IPR004161:IPR000640:IPR 013842:IPR005225:IPR006297; KEGG: ttj:TTHA0741 GTP-binding protein LepA; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain protein; GTP-binding protein LepA domain protein; SPTR: C1XPS1 GTP-binding protein LepA; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; GTP-binding protein LepA C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain YP_003685737.1 COGs: COG0642 Signal transduction histidine kinase; InterProIPR005467:IPR003660:IPR003594:IPR009082:IPR 003661:IPR004358; KEGG: tth:TTC0388 sensory transduction protein kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: C1XPS0 Sensor protein; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003685738.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792:IPR001789:IPR011991:IPR011006; KEGG: tth:TTC0668 two-component response regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: C1XPR9 Two component transcriptional regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_003685739.1 COGs: COG3870 conserved hypothetical protein; InterPro IPR011322:IPR010375; KEGG: ttj:TTHA0611 hypothetical protein; PFAM: protein of unknown function DUF970; SPTR: C1XPR8 Uncharacterized conserved protein; PFAM: Protein of unknown function (DUF970) YP_003685740.1 COGs: COG1651 Protein-disulfide isomerase; InterPro IPR017936:IPR001853:IPR012336:IPR012335; KEGG: ttj:TTHA0610 hypothetical protein; PFAM: DSBA oxidoreductase; SPTR: C1XPR7 Protein-disulfide isomerase; PFAM: DSBA-like thioredoxin domain YP_003685741.1 COGs: COG2519 tRNA(1-methyladenosine) methyltransferase and related methyltransferase; InterPro IPR000682; KEGG: tth:TTC0244 tRNA (adenine-N(1)-)-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; PRIAM: tRNA (adenine-N(1)-)-methyltransferase; SPTR: C1XPR6 tRNA (Adenine-58-N(1)-) methyltransferase; PFAM: tRNA methyltransferase complex GCD14 subunit YP_003685742.1 COGs: COG1293 RNA-binding protein homologous to eukaryotic snRNP; InterPro IPR008616:IPR008532; KEGG: tth:TTC0243 fibronectin/fibrinogen-binding protein; PFAM: Fibronectin-binding A domain protein; protein of unknown function DUF814; SPTR: C1XPR5 Predicted RNA-binding protein similar to snRNP; PFAM: Domain of unknown function (DUF814); Fibronectin-binding protein A N-terminus (FbpA) YP_003685743.1 COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: dge:Dgeo_0907 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XPR4 Glucose ABC transporter membrane protein; mannose ABC transporter membrane protein; PFAM: Binding-protein-dependent transport system inner membrane component YP_003685744.1 COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: tth:TTC0327 glucose transport system permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XPR3 Mannose ABC transporter membrane protein; glucose ABC transporter membrane protein; PFAM: Binding-protein-dependent transport system inner membrane component YP_003685745.1 COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: ttj:TTHA0688 sugar ABC transporter, substrate-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: C1XPR2 Glucose-binding protein; mannose-binding protein; PFAM: Bacterial extracellular solute-binding protein YP_003685746.1 COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600:IPR005471; KEGG: tth:TTC0329 transcriptional repressor; PFAM: ROK family protein; regulatory protein IclR; SPTR: C1XPR1 Transcriptional regulator/sugar kinase; PFAM: ROK family; IclR helix-turn-helix domain YP_003685747.1 COGs: COG1490 D-Tyr-tRNAtyr deacylase; InterPro IPR003732; KEGG: ttj:TTHA0949 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; SPTR: C1XPR0 D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-Tyr-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase YP_003685748.1 COGs: COG1307 conserved hypothetical protein; InterPro IPR003797; KEGG: ttj:TTHA0950 DegV family protein; PFAM: DegV family protein; SPTR: C1XPQ9 DegV family protein; TIGRFAM: degV family protein; PFAM: Uncharacterised protein, DegV family COG1307; TIGRFAM: EDD domain protein, DegV family YP_003685749.1 COGs: COG1307 conserved hypothetical protein; InterPro IPR003797; KEGG: tth:TTC0585 DegV protein; PFAM: DegV family protein; SPTR: C1XPQ8 DegV family protein; TIGRFAM: degV family protein; PFAM: Uncharacterised protein, DegV family COG1307; TIGRFAM: EDD domain protein, DegV family YP_003685750.1 COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterProIPR016040:IPR006140:IPR002912:IPR006236:IPR 006139; KEGG: tth:TTC0586 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; SPTR: C1XPQ7 D-3-phosphoglycerate dehydrogenase; TIGRFAM: D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; ACT domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; TIGRFAM: D-3-phosphoglycerate dehydrogenase YP_003685751.1 COGs: COG0075 Serine-pyruvate aminotransferase/ aspartate aminotransferase; InterProIPR020578:IPR015422:IPR015424:IPR000192:IPR 015421; KEGG: tth:TTC0213 soluble hydrogenase, small subunit; PFAM: aminotransferase class V; SPTR: C1XPQ6 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase; PFAM: Aminotransferase class-V YP_003685752.1 COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537:IPR006371; KEGG: tth:TTC0240 4-hydroxybenzoate octaprenyltransferase; PFAM: UbiA prenyltransferase; SPTR: C1XPQ5 4-hydroxybenzoate octaprenyltransferase; TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase family; TIGRFAM: putative 4-hydroxybenzoate polyprenyltransferase YP_003685753.1 KEGG: kra:Krad_3188 pseudouridine synthase, RluA family; SPTR: C1XPQ4 Putative uncharacterized protein YP_003685754.1 COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034:IPR018356:IPR014036; KEGG: rde:RD1_2417 DeoR family transcriptional regulator; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; SPTR: C1XPQ3 Transcriptional regulator, DeoR family; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain YP_003685755.1 COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: tna:CTN_1372 extracellular solute-binding protein family 1; PFAM: extracellular solute-binding protein family 1; SPTR: C1XPQ2 Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: Bacterial extracellular solute-binding protein YP_003685756.1 COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: hor:Hore_20510 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XPQ1 Carbohydrate ABC transporter membrane protein 1, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component YP_003685757.1 COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: hor:Hore_20500 monosaccharide-transporting ATPase; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XPQ0 Carbohydrate ABC transporter membrane protein 2, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component YP_003685758.1 COGs: COG1874 Beta-galactosidase; InterProIPR013739:IPR013738:IPR003476:IPR013781:IPR 013780:IPR017853:IPR013529; KEGG: avi:Avi_5742 beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; PRIAM: Beta-galactosidase; SPTR: C1XPP9 Beta-galactosidase; PFAM: Beta-galactosidase trimerisation domain; Beta-galactosidase C-terminal domain; Beta-galactosidase YP_003685759.1 COGs: COG1085 Galactose-1-phosphate uridylyltransferase; InterProIPR001937:IPR005849:IPR011151:IPR011146:IPR 019779; KEGG: tth:TT_P0071 galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein; PRIAM: UDP-glucose--hexose-1-phosphate uridylyltransferase; SPTR: C1XPP8 Galactose-1-phosphate uridylyltransferase; TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: Galactose-1-phosphate uridyl transferase, C-terminal domain; Galactose-1-phosphate uridyl transferase, N-terminal domain; TIGRFAM: galactose-1-phosphate uridylyltransferase, family 1 YP_003685760.1 COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000994; KEGG: cyn:Cyan7425_2151 peptidase M24; PFAM: peptidase M24; SPTR: C1XPP7 Xaa-Pro aminopeptidase; PFAM: Metallopeptidase family M24 YP_003685761.1 COGs: COG0153 Galactokinase; InterProIPR013750:IPR020568:IPR000705:IPR006204:IPR 006206:IPR014721:IPR019539:IPR006203; KEGG: tth:TTC0226 galactokinase; PFAM: GHMP kinase; GHMP kinase domain protein; Galactokinase galactose-binding domain; SPTR: C1XPP6 Galactokinase; TIGRFAM: galactokinase; PFAM: Galactokinase galactose-binding signature; GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: galactokinase YP_003685762.1 KEGG: conserved hypothetical protein; SPTR: C1XPP5 Putative uncharacterized protein YP_003685763.1 COGs: COG1281 Disulfide bond chaperones of the HSP33 family; InterPro IPR000397:IPR016153:IPR016154; KEGG: ttj:TTHA0894 chaperonin HSP33; PFAM: Hsp33 protein; SPTR: C1XPP4 Disulfide bond chaperone; PFAM: Hsp33 protein YP_003685764.1 COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase; InterPro IPR015424:IPR004632:IPR005814:IPR015421; KEGG: pfs:PFLU4036 putative 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; PRIAM: (S)-3-amino-2-methylpropionate transaminase; SPTR: C1XPP3 4-aminobutyrate aminotransferase; TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: 4-aminobutyrate aminotransferase, prokaryotic type YP_003685765.1 COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterProIPR008995:IPR005893:IPR003439:IPR017871:IPR 013611:IPR003593; KEGG: dba:Dbac_2002 spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; SPTR: C1XPP2 Spermidine/putrescine ABC transporter ATP-binding subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter; TOBE domain; TIGRFAM: spermidine/putrescine ABC transporter ATP-binding subunit YP_003685766.1 COGs: COG1176 ABC-type spermidine/putrescine transport system permease component I; InterPro IPR000515; KEGG: dat:HRM2_14130 PotB3; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XPP1 ABC-type spermidine/putrescine transport system, permease component I; PFAM: Binding-protein-dependent transport system inner membrane component YP_003685767.1 COGs: COG1177 ABC-type spermidine/putrescine transport system permease component II; InterPro IPR000515; KEGG: dat:HRM2_14120 PotC3; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XPP0 ABC-type spermidine/putrescine transport system, permease component II; PFAM: Binding-protein-dependent transport system inner membrane component YP_003685768.1 COGs: COG0687 Spermidine/putrescine-binding periplasmic protein; InterPro IPR006059:IPR001188; KEGG: dba:Dbac_2005 extracellular solute-binding protein family 1; PFAM: extracellular solute-binding protein family 1; SPTR: C1XPN9 Spermidine/putrescine-binding periplasmic protein; PFAM: Bacterial extracellular solute-binding protein YP_003685769.1 COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase; InterPro IPR015424:IPR005814:IPR015421; KEGG: rrs:RoseRS_4570 aminotransferase class-III; PFAM: aminotransferase class-III; SPTR: C1XPN8 4-aminobutyrate aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: 4-aminobutyrate aminotransferase, prokaryotic type YP_003685770.1 COGs: COG0687 Spermidine/putrescine-binding periplasmic protein; InterPro IPR001188:IPR006059; KEGG: dba:Dbac_2005 extracellular solute-binding protein family 1; PFAM: extracellular solute-binding protein family 1; SPTR: C1XPN7 Spermidine/putrescine-binding periplasmic protein; PFAM: Bacterial extracellular solute-binding protein YP_003685771.1 InterPro IPR000182:IPR016181; KEGG: rca:Rcas_0119 hypothetical protein; SPTR: C1XPN6 Putative uncharacterized protein; PFAM: Acetyltransferase (GNAT) family YP_003685772.1 COGs: COG1574 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR011059:IPR013108; KEGG: sti:Sthe_1513 amidohydrolase 3; PFAM: Amidohydrolase 3; SPTR: C1XPN5 Predicted TIM-barrel fold metal-dependent hydrolase, COG1574; PFAM: Amidohydrolase family YP_003685773.1 InterPro IPR000182:IPR016181; KEGG: cvi:CV_0230 aminoglycoside N6'-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: C1XPN4 Acetyltransferase (GNAT) family protein; PFAM: Acetyltransferase (GNAT) family YP_003685774.1 COGs: COG0001 Glutamate-1-semialdehyde aminotransferase; InterPro IPR015424:IPR005814:IPR015421; KEGG: nca:Noca_3921 aminotransferase; PFAM: aminotransferase class-III; SPTR: C1XPN3 Aminotransferase; PFAM: Aminotransferase class-III YP_003685775.1 InterPro IPR002559; KEGG: tth:TT_P0158 hypothetical protein; PFAM: transposase IS4 family protein; SPTR: C1XPN1 Transposase family protein; PFAM: Transposase DDE domain YP_003685776.1 COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: chl:Chy400_4192 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: C1XPN0 Glycine/D-amino acid oxidase, deaminating; PFAM: FAD dependent oxidoreductase YP_003685777.1 COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR016161:IPR015590:IPR016162:IPR016160; KEGG: aha:AHA_3818 gamma-aminobutyraldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; PRIAM: Aminobutyraldehyde dehydrogenase; SPTR: C1XPM9 NAD-dependent aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase family; TIGRFAM: 1-pyrroline dehydrogenase YP_003685778.1 COGs: COG1177 ABC-type spermidine/putrescine transport system permease component II; InterPro IPR000515; KEGG: rhi:NGR_c21720 putative transmembrane component of ABC transporter; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XPM8 ABC-type spermidine/putrescine transport system, permease component II; PFAM: Binding-protein-dependent transport system inner membrane component YP_003685779.1 COGs: COG1176 ABC-type spermidine/putrescine transport system permease component I; InterPro IPR000515; KEGG: rec:RHECIAT_CH0003933 probable spermidine/putrescine ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XPM7 ABC-type spermidine/putrescine transport system, permease component I; PFAM: Binding-protein-dependent transport system inner membrane component YP_003685780.1 COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterProIPR008995:IPR005893:IPR003439:IPR017871:IPR 013611:IPR003593; KEGG: pen:PSEEN1241 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; SPTR: C1XPM6 Spermidine/putrescine ABC transporter ATP-binding subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter; TOBE domain; TIGRFAM: spermidine/putrescine ABC transporter ATP-binding subunit YP_003685781.1 COGs: COG0687 Spermidine/putrescine-binding periplasmic protein; InterPro IPR001188:IPR006059; KEGG: pen:PSEEN1242 ABC transporter, periplasmic polyamine-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: C1XPM5 Spermidine/putrescine-binding periplasmic protein; PFAM: Bacterial extracellular solute-binding protein YP_003685782.1 COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: sme:SMc01651 putative transcription regulator protein; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1XPM4 Transcriptional regulator, COG0583; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain YP_003685783.1 KEGG: ttj:TTHA1528 hypothetical protein; SPTR: C1XPM2 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3197) YP_003685784.1 KEGG: nca:Noca_4102 ABC transporter related; SPTR: C1XPM1 Putative uncharacterized protein YP_003685785.1 COGs: COG2151 metal-sulfur cluster biosynthetic protein; InterPro IPR002744; KEGG: ttj:TTHA0519 hypothetical protein; PFAM: protein of unknown function DUF59; SPTR: C1XPM0 Predicted metal-sulfur cluster biosynthetic enzyme; PFAM: Domain of unknown function DUF59 YP_003685786.1 COGs: COG0823 Periplasmic component of the Tol biopolymer transport system; InterPro IPR011042:IPR011659; KEGG: hoh:Hoch_5623 WD40 domain protein beta propeller; PFAM: WD40 domain protein beta Propeller; SPTR: C1XPL9 Periplasmic component of the Tol biopolymer transport system; PFAM: Lipoprotein LpqB beta-propeller domain; WD40-like Beta Propeller Repeat YP_003685787.1 COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: ddr:Deide_22780 putative N-acetylmuramoyl-L-alanine amidase, precursor; PFAM: cell wall hydrolase/autolysin; SPTR: C1XPL8 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase YP_003685788.1 KEGG: hbu:Hbut_1358 ATP-dependent protease; SPTR: C1XPL7 Putative uncharacterized protein YP_003685789.1 COGs: COG0247 Fe-S oxidoreductase; InterProIPR017896:IPR012285:IPR017900:IPR004017:IPR 009051; KEGG: tth:TTC0752 iron-sulfur binding reductase, putative; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: C1XPL6 Fe-S oxidoreductase; PFAM: Cysteine-rich domain YP_003685790.1 KEGG: ttj:TTHB024 hypothetical protein; SPTR: C1XPL5 Putative uncharacterized protein YP_003685791.1 COGs: COG3629 DNA-binding transcriptional activator of the SARP family; InterPro IPR005158:IPR001867; KEGG: reh:H16_B1607 tow domain-containing protein; PFAM: transcriptional activator domain; transcriptional regulator domain protein; SPTR: C1XPL4 DNA-binding transcriptional activator of the SARP family; PFAM: Bacterial transcriptional activator domain; NACHT domain YP_003685792.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XPL3 Integrase family protein; PFAM: Integrase core domain YP_003685793.1 COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: dge:Dgeo_1021 LmbE-like protein protein; PFAM: LmbE family protein; SPTR: C1XPL2 Uncharacterized LmbE-like protein; PFAM: GlcNAc-PI de-N-acetylase YP_003685794.1 KEGG: sro:Sros_6694 wyosine base formation; SPTR: C1XPL1 Putative uncharacterized protein; PFAM: Mycothiol maleylpyruvate isomerase N-terminal domain YP_003685795.1 KEGG: reu:Reut_B4311 hypothetical protein; SPTR: C1XPL0 Putative uncharacterized protein YP_003685796.1 KEGG: ttj:TTHA1118 hypothetical protein; SPTR: C1XPK9 Putative uncharacterized protein YP_003685797.1 COGs: COG2340 Uncharacterized protein with SCP/PR1 domains; InterPro IPR014044; KEGG: ddr:Deide_14920 conserved hypothetical protein, precursor; PFAM: SCP-like extracellular; SPTR: C1XPK8 SCP-like extracellular protein; PFAM: Cysteine-rich secretory protein family YP_003685798.1 COGs: COG1963 conserved hypothetical protein; InterPro IPR003832; KEGG: ttj:TTHA1119 hypothetical protein; PFAM: acid phosphatase/vanadium-dependent haloperoxidase related; SPTR: C1XPK7 Uncharacterized conserved protein; PFAM: Divergent PAP2 family YP_003685799.1 COGs: COG0190 5 10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; InterPro IPR016040:IPR000672:IPR020631:IPR020630; KEGG: tth:TTC0755 methylenetetrahydrofolate dehydrogenase (NADP+)/methenyltetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; PRIAM: Methylenetetrahydrofolate dehydrogenase (NADP(+)); SPTR: C1XPK5 5,10-methylenetetrahydrofolate dehydrogenase (NADP+); methenyltetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_003685800.1 COGs: COG0781 Transcription termination factor; InterPro IPR011605:IPR006027; KEGG: ttj:TTHA1121 N-utilization substance protein B; PFAM: NusB/RsmB/TIM44; SPTR: C1XPK4 NusB antitermination factor; TIGRFAM: transcription antitermination factor NusB; PFAM: NusB family; TIGRFAM: transcription antitermination factor NusB YP_003685801.1 COGs: COG1302 conserved hypothetical protein; InterPro IPR005531; KEGG: ttj:TTHA1122 hypothetical protein; PFAM: protein of unknown function DUF322; SPTR: C1XPK3 Uncharacterized conserved protein; PFAM: Protein of unknown function (DUF322) YP_003685802.1 COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: ttj:TTHA0585 branched-chain amino acid ABC transporter, permease protein; PFAM: inner-membrane translocator; SPTR: C1XPK2 ABC-type branched-chain amino acid transport system, permease component; PFAM: Branched-chain amino acid transport system / permease component YP_003685803.1 COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR000873; KEGG: tth:TTC0217 putative ABC transporter component; PFAM: AMP-dependent synthetase and ligase; SPTR: C1XPK1 AMP-forming long-chain acyl-CoA synthetase; PFAM: AMP-binding enzyme YP_003685804.1 COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003593:IPR003439; KEGG: ttj:TTHA0587 branched-chain amino acid ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XPK0 ABC-type branched-chain amino acid transport systems, ATPase component; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter YP_003685805.1 COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: ttj:TTHA0588 branched-chain amino acid ABC transport ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XPJ9 ABC-type branched-chain amino acid transport systems, ATPase component; PFAM: ABC transporter YP_003685806.1 COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: ttj:TTHA0589 branched-chain amino acid ABC transporter permease protein; PFAM: inner-membrane translocator; SPTR: C1XPJ8 Branched-chain amino acid ABC-type transport system, permease component; PFAM: Branched-chain amino acid transport system / permease component YP_003685807.1 COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR000709:IPR001828; KEGG: ttj:TTHA0590 branched-chain amino acid ABC transporter amino acid-binding protein; PFAM: Extracellular ligand-binding receptor; SPTR: C1XPJ7 ABC-type branched-chain amino acid transport system, periplasmic component; PFAM: Receptor family ligand binding region YP_003685808.1 InterProIPR019734:IPR013026:IPR001440:IPR011717:IPR 011990; KEGG: tth:TTC1204 hypothetical protein; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; SPTR: C1XPJ6 Putative uncharacterized protein YP_003685809.1 COGs: COG1899 Deoxyhypusine synthase; InterPro IPR002773; KEGG: rrs:RoseRS_1218 deoxyhypusine synthase; PFAM: deoxyhypusine synthase; SPTR: C1XPJ5 Deoxyhypusine synthase; PFAM: Deoxyhypusine synthase; TIGRFAM: deoxyhypusine synthase YP_003685810.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XPJ4 Integrase family protein; PFAM: Integrase core domain YP_003685811.1 COGs: COG2270 Permease of the major facilitator superfamily; InterPro IPR011701:IPR016196; KEGG: ddr:Deide_09890 putative permease of the major facilitator superfamily; putative membrane protein; PFAM: major facilitator superfamily MFS_1; SPTR: C1XPJ3 Major Facilitator Superfamily transporter; PFAM: Major Facilitator Superfamily YP_003685812.1 COGs: COG0018 Arginyl-tRNA synthetase; InterProIPR015945:IPR014729:IPR008909:IPR009080:IPR 001412:IPR005148:IPR001278; KEGG: tth:TTC1906 arginyl-tRNA synthetase; PFAM: DALR anticodon binding domain protein; Arginyl-tRNA synthetase, class Ic, core; arginyl tRNA synthetase domain protein; PRIAM: Arginine--tRNA ligase; SMART: DALR anticodon binding domain protein; SPTR: C1XPJ2 Arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase; PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase YP_003685813.1 COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001478:IPR009003:IPR001254:IPR001940; KEGG: ttj:TTHA0099 serine protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; SPTR: C1XPJ1 Trypsin-like serine protease with C-terminal PDZ domain; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF) YP_003685814.1 COGs: COG1428 Deoxynucleoside kinase; InterPro IPR002624; KEGG: dra:DR_0299 deoxyguanosine kinase/deoxyadenosine kinase subunit; PFAM: deoxynucleoside kinase; SPTR: C1XPJ0 Deoxynucleoside kinase; PFAM: Deoxynucleoside kinase YP_003685815.1 COGs: COG1428 Deoxynucleoside kinase; InterPro IPR002624; KEGG: dra:DR_0298 deoxyguanosine kinase/deoxyadenosine kinase subunit; PFAM: deoxynucleoside kinase; SPTR: C1XPI9 Deoxynucleoside kinase; PFAM: Deoxynucleoside kinase YP_003685816.1 COGs: COG2957 Peptidylarginine deiminase; InterPro IPR007466; KEGG: ddr:Deide_22800 putative agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; PRIAM: Agmatine deiminase; SPTR: C1XPI8 Peptidylarginine deiminase-like enzyme; PFAM: Porphyromonas-type peptidyl-arginine deiminase YP_003685817.1 COGs: COG0388 amidohydrolase; InterPro IPR003010:IPR017755; KEGG: dra:DR_2535 hydrolase, putative; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: C1XPI7 N-carbamoylputrescine amidase; TIGRFAM: N-carbamoylputrescine amidase; PFAM: Carbon-nitrogen hydrolase; TIGRFAM: N-carbamoylputrescine amidase YP_003685818.1 COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209:IPR010259; KEGG: dge:Dgeo_2081 peptidase S8 and S53, subtilisin, kexin, sedolisin; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; proteinase inhibitor I9 subtilisin propeptide; SPTR: C1XPI6 Subtilisin-like serine protease; PFAM: Subtilase family YP_003685819.1 COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR000160:IPR003018; KEGG: cag:Cagg_0785 diguanylate cyclase with GAF sensor; PFAM: GGDEF domain containing protein; GAF domain protein; PRIAM: Diguanylate kinase; SMART: GGDEF domain containing protein; GAF domain protein; SPTR: C1XPI5 Diguanylate cyclase (GGDEF) domain-containing protein; TIGRFAM: diguanylate cyclase; PFAM: GAF domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_003685820.1 COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; InterPro IPR013221:IPR004101:IPR000713:IPR005761; KEGG: ttj:TTHA0100 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: C1XPI4 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetases YP_003685821.1 COGs: COG0327 conserved hypothetical protein; InterPro IPR002678; KEGG: ttj:TTHA1606 hypothetical protein; PFAM: protein of unknown function DUF34; SPTR: C1XPI3 Putative uncharacterized protein; PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: conserved hypothetical protein TIGR00486 YP_003685822.1 COGs: COG0125 Thymidylate kinase; InterPro IPR018094:IPR018095:IPR000062; KEGG: ttj:TTHA1607 thymidylate kinase (TMP kinase); PFAM: thymidylate kinase; PRIAM: dTMP kinase; SPTR: C1XPI2 Thymidylate kinase; TIGRFAM: thymidylate kinase; PFAM: Thymidylate kinase; TIGRFAM: thymidylate kinase YP_003685823.1 COGs: COG3823 Glutamine cyclotransferase; InterPro IPR015943:IPR007788:IPR011044; KEGG: cak:Caul_1498 glutamine cyclotransferase; PFAM: glutamine cyclotransferase; SPTR: C1XPI1 Glutamine cyclotransferase; PFAM: Glutamine cyclotransferase YP_003685824.1 COGs: COG0165 Argininosuccinate lyase; InterPro IPR000362:IPR008948:IPR020557:IPR003031; KEGG: ddr:Deide_1p00670 putative argininosuccinate lyase; PFAM: fumarate lyase; SPTR: C1XPI0 Argininosuccinate lyase; PFAM: Lyase; TIGRFAM: argininosuccinate lyase YP_003685825.1 COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: ddr:Deide_1p00640 putative sugar ABC transporter, permease component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XPH9 Carbohydrate ABC transporter membrane protein 2, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component YP_003685826.1 COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: ddr:Deide_1p00650 putative sugar ABC transporter, permease component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XPH8 Carbohydrate ABC transporter membrane protein 1, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component YP_003685827.1 COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: ddr:Deide_1p00660 putative sugar ABC transporter, periplasmic component; PFAM: extracellular solute-binding protein family 1; SPTR: C1XPH7 Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: Bacterial extracellular solute-binding protein YP_003685828.1 COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: ddr:Deide_10320 putative SPFH domain / band 7 family / prohibitin (PHB) protein; PFAM: band 7 protein; SMART: band 7 protein; SPTR: C1XPH6 Membrane protease subunit, stomatin/prohibitin; PFAM: SPFH domain / Band 7 family YP_003685829.1 COGs: COG2331 conserved hypothetical protein; KEGG: ttj:TTHA1610 hypothetical protein; SPTR: C1XPH5 Uncharacterized conserved protein; TIGRFAM: putative regulatory protein, FmdB family YP_003685830.1 COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; InterPro IPR002698; KEGG: ttj:TTHA1611 5-formyltetrahydrofolate cyclo-ligase family protein; PFAM: 5-formyltetrahydrofolate cyclo-ligase; SPTR: C1XPH4 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase YP_003685831.1 COGs: COG0739 Membrane protein related to metalloendopeptidase; InterProIPR018073:IPR011055:IPR018392:IPR016047:IPR 002482; KEGG: dge:Dgeo_1516 peptidase M23B; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: C1XPH3 Metalloendopeptidase-like membrane protein; PFAM: Peptidase family M23; LysM domain YP_003685832.1 COGs: COG0757 3-dehydroquinate dehydratase II; InterPro IPR001874:IPR018509; KEGG: ttj:TTHA1354 3-dehydroquinate dehydratase; PFAM: dehydroquinase class II; PRIAM: 3-dehydroquinate dehydratase; SPTR: C1XPH2 3-dehydroquinate dehydratase; TIGRFAM: 3-dehydroquinate dehydratase, type II; PFAM: Dehydroquinase class II; TIGRFAM: 3-dehydroquinate dehydratase, type II YP_003685833.1 COGs: COG5267 conserved hypothetical protein; InterPro IPR014917; KEGG: rpf:Rpic12D_1567 protein of unknown function DUF1800; PFAM: Protein of unknown function DUF1800; SPTR: C1XPH1 Uncharacterized conserved protein; PFAM: Protein of unknown function (DUF1800) YP_003685834.1 COGs: COG4102 conserved hypothetical protein; InterPro IPR017909:IPR010869:IPR006311; KEGG: ddr:Deide_00630 conserved hypothetical protein, precursor; PFAM: protein of unknown function DUF1501; SPTR: C1XPH0 Uncharacterized conserved protein; PFAM: Protein of unknown function (DUF1501); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003685835.1 COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterProIPR002205:IPR013758:IPR006691:IPR013760:IPR 005743:IPR013757; KEGG: ttj:TTHA1355 DNA gyrase subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA gyrase/topoisomerase IV subunit A; SPTR: C1XPG9 DNA gyrase subunit A; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase C-terminal domain, beta-propeller; DNA gyrase/topoisomerase IV, subunit A; TIGRFAM: DNA gyrase, A subunit YP_003685836.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198:IPR016040:IPR002347; KEGG: hau:Haur_0971 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: C1XPG8 Putative uncharacterized protein; PFAM: short chain dehydrogenase YP_003685837.1 KEGG: jacalin lectin family protein; SPTR: C1XPG7 Putative uncharacterized protein YP_003685838.1 InterPro IPR000601; KEGG: pmx:PERMA_0937 PKD domain protein; PFAM: PKD domain containing protein; SMART: PKD domain containing protein; SPTR: C1XPG6 PKD domain protein; PFAM: PKD domain YP_003685839.1 COGs: COG1023 6-phosphogluconate dehydrogenase; InterProIPR004849:IPR016040:IPR002204:IPR006115:IPR 013328:IPR008927:IPR006114:IPR006183; KEGG: mei:Msip34_1094 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase domain protein; SPTR: C1XPG5 6-phosphogluconate dehydrogenase (Decarboxylating); TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase; 6-phosphogluconate dehydrogenase, C-terminal domain; TIGRFAM: 6-phosphogluconate dehydrogenase (decarboxylating); 6-phosphogluconate dehydrogenase, decarboxylating YP_003685840.1 SPTR: C1XPG4 Putative uncharacterized protein YP_003685841.1 COGs: COG0364 Glucose-6-phosphate 1-dehydrogenase; InterPro IPR016040:IPR001282:IPR019796; KEGG: hna:Hneap_0996 glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; PRIAM: Glucose-6-phosphate dehydrogenase; SPTR: C1XPG3 Glucose-6-phosphate 1-dehydrogenase; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase, NAD binding domain; Glucose-6-phosphate dehydrogenase, C-terminal domain; TIGRFAM: glucose-6-phosphate 1-dehydrogenase YP_003685842.1 COGs: COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; InterPro IPR005900; KEGG: rmr:Rmar_2299 6-phosphogluconolactonase; SPTR: C1XPG2 6-phosphogluconolactonase; TIGRFAM: 6-phosphogluconolactonase; TIGRFAM: 6-phosphogluconolactonase YP_003685843.1 COGs: COG1324 conserved hypothetical protein involved in tolerance to divalent cations; InterPro IPR004323:IPR011322; KEGG: ttj:TTHA1356 divalent cation tolerance protein (Cut A1); PFAM: CutA1 divalent ion tolerance protein; SPTR: C1XPG1 Uncharacterized protein involved in tolerance to divalent cations; PFAM: CutA1 divalent ion tolerance protein YP_003685844.1 COGs: COG0598 Mg2+ and Co2+ transporter; InterPro IPR002523; KEGG: ddr:Deide_23000 putative magnesium transport protein CorA; putative membrane protein; PFAM: Mg2 transporter protein CorA family protein; SPTR: C1XPG0 Mg2+/Co2+ transporter; PFAM: CorA-like Mg2+ transporter protein; TIGRFAM: magnesium Mg(2+) and cobalt Co(2+) transport protein (corA) YP_003685845.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterProIPR012318:IPR018490:IPR001808:IPR000595:IPR 011991:IPR014710; KEGG: ttj:TTHA1359 CRP/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; SPTR: C1XPF9 cAMP-binding protein; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain YP_003685846.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XPF8 Integrase family protein; PFAM: Integrase core domain YP_003685847.1 COGs: COG0492 Thioredoxin reductase; InterPro IPR013027:IPR000103; KEGG: tth:TTC0096 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: C1XPF7 Thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_003685848.1 COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR006146:IPR004843:IPR008334:IPR006179; KEGG: tth:TTC0964 5'-nucleotidase; PFAM: 5'-Nucleotidase domain protein; metallophosphoesterase; SPTR: C1XPF6 5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase; PFAM: Calcineurin-like phosphoesterase; 5'-nucleotidase, C-terminal domain; TIGRFAM: NAD pyrophosphatase/5'-nucleotidase NadN YP_003685849.1 COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR001959:IPR010095; KEGG: rmr:Rmar_1189 transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; putative transposase IS891/IS1136/IS1341 family; SPTR: C1XPF5 Transposase, IS605 OrfB family, central region; TIGRFAM: transposase, IS605 OrfB family; PFAM: Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region YP_003685850.1 COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR011041:IPR011042; KEGG: sth:STH2009 hypothetical protein; SPTR: C1XPF4 Glucose/sorbosone dehydrogenase; PFAM: Glucose / Sorbosone dehydrogenase YP_003685851.1 COGs: COG0174 Glutamine synthetase; InterPro IPR008147:IPR004809:IPR014746:IPR008146; KEGG: ttj:TTHA1329 glutamine synthetase; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; PRIAM: Glutamate--ammonia ligase; SPTR: C1XPF3 L-glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I YP_003685852.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XPF2 Integrase family protein; PFAM: Integrase core domain YP_003685853.1 COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: tth:TTC0966 leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein; PFAM: Extracellular ligand-binding receptor; SPTR: C1XPF1 ABC-type branched-chain amino acid transport system, periplasmic component; PFAM: Receptor family ligand binding region YP_003685854.1 COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: tth:TTC0967 branched-chain amino acid transport system permease protein LivH; PFAM: inner-membrane translocator; SPTR: C1XPF0 Branched-chain amino acid ABC-type transport system, permease component; PFAM: Branched-chain amino acid transport system / permease component YP_003685855.1 COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: tth:TTC0968 branched-chain amino acid transport system permease protein LivM; PFAM: inner-membrane translocator; SPTR: C1XPE9 ABC-type branched-chain amino acid transport system, permease component; PFAM: Branched-chain amino acid transport system / permease component YP_003685856.1 COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003593:IPR003439; KEGG: tth:TTC0969 branched-chain amino acid transport ATP-binding protein LivG; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XPE8 ABC-type branched-chain amino acid transport systems, ATPase component; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter YP_003685857.1 COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: ttj:TTHA1335 branched-chain amino acid ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XPE7 ABC-type branched-chain amino acid transport systems, ATPase component; PFAM: ABC transporter YP_003685858.1 COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: tth:TTC0971 dipeptide-binding protein; PFAM: extracellular solute-binding protein family 5; SPTR: C1XPE6 ABC-type dipeptide transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_003685859.1 InterPro IPR007341; KEGG: lhk:LHK_01976 transglycosylase associated protein; PFAM: Transglycosylase-associated protein; SPTR: C1XPE5 Transglycosylase associated protein; PFAM: Transglycosylase associated protein YP_003685860.1 COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: tth:TTC0972 dipeptide transport system permease protein DppB; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XPE4 ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_003685861.1 COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: tth:TTC0973 dipeptide transport system permease protein DppC; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XPE3 ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_003685862.1 KEGG: tth:TTC0974 hypothetical protein; SPTR: C1XPE2 Putative uncharacterized protein YP_003685863.1 COGs: COG0285 Folylpolyglutamate synthase; InterPro IPR013221:IPR004101:IPR001645; KEGG: ttj:TTHA1340 folyl-polyglutamate synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; PRIAM: Tetrahydrofolate synthase; SPTR: C1XPE1 Folylpolyglutamate synthase/dihydrofolate synthase; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase YP_003685864.1 COGs: COG0521 Molybdopterin biosynthesis protein; InterPro IPR008284:IPR001453:IPR020817; KEGG: saf:SULAZ_0427 molybdenum cofactor biosynthesis protein; PFAM: molybdopterin binding domain; SMART: molybdopterin binding domain; SPTR: C1XPE0 Molybdopterin adenylyltransferase; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: Probable molybdopterin binding domain; TIGRFAM: molybdenum cofactor synthesis domain YP_003685865.1 KEGG: lci:LCK_00012 major facilitator superfamily permease; SPTR: C1XPD9 Putative uncharacterized protein YP_003685866.1 COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR017940:IPR003439:IPR003593:IPR011527:IPR 001140; KEGG: tth:TTC0976 multidrug resistance ABC transporter ATP-binding and permease protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: C1XPD8 ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter transmembrane region; ABC transporter YP_003685867.1 COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR017940:IPR003439:IPR003593:IPR011527:IPR 001140; KEGG: ttj:TTHA1342 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: C1XPD7 ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter transmembrane region; ABC transporter YP_003685868.1 KEGG: ttj:TTHA1350 hypothetical protein; SPTR: C1XPD6 Putative uncharacterized protein YP_003685869.1 KEGG: similar to calcium channel pore-forming subunit Cch1; SPTR: C1XPD5 Putative uncharacterized protein YP_003685870.1 COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR001261:IPR011650:IPR002933; KEGG: ttj:TTHA1351 M20/M25/M40 family peptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; SPTR: C1XPD4 Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain YP_003685871.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792:IPR001789:IPR011991:IPR011006; KEGG: ttj:TTHA1352 response regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: C1XPD3 Two component transcriptional regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_003685872.1 InterPro IPR001647:IPR012287:IPR009057; KEGG: oih:OB0995 transcriptional regulator; PFAM: regulatory protein TetR; SPTR: C1XPD2 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family YP_003685873.1 COGs: COG2076 Membrane transporter of cations and cationic drugs; InterPro IPR000390; KEGG: tth:TTC0565 quaternary ammonium compound-resistance protein; PFAM: small multidrug resistance protein; SPTR: C1XPD1 Cation/cationic drug transporter; PFAM: Small Multidrug Resistance protein YP_003685874.1 InterPro IPR020348; KEGG: bcx:BCA_3387 hypothetical protein; SPTR: C1XPD0 Putative uncharacterized protein YP_003685875.1 InterPro IPR011009:IPR002575; KEGG: tth:TTC0945 hypothetical protein; PFAM: aminoglycoside phosphotransferase; SPTR: C1XPC9 Predicted aminoglycoside phosphotransferase; PFAM: Phosphotransferase enzyme family YP_003685876.1 COGs: COG0035 Uracil phosphoribosyltransferase; InterPro IPR005765:IPR000836; KEGG: dge:Dgeo_1296 uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: Uracil phosphoribosyltransferase; SPTR: C1XPC8 Uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: uracil phosphoribosyltransferase YP_003685877.1 COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR018481; KEGG: ttj:TTHA1313 hypothetical protein; PFAM: Glycosyl transferase, family 4, conserved region; SPTR: C1XPC7 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; PFAM: Glycosyl transferase family 4 YP_003685878.1 COGs: COG0381 UDP-N-acetylglucosamine 2-epimerase; InterPro IPR003331; KEGG: ttj:TTHA1314 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; PRIAM: UDP-N-acetylglucosamine 2-epimerase; SPTR: C1XPC6 UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase YP_003685879.1 InterPro IPR016196:IPR011701; KEGG: ttj:TTHA1315 putative integral membrane efflux protein; PFAM: major facilitator superfamily MFS_1; SPTR: C1XPC5 Arabinose efflux permease family protein; PFAM: Bacterial protein of unknown function (DUF894) YP_003685880.1 COGs: COG2358 TRAP-type uncharacterized transport system periplasmic component; InterPro IPR011852; KEGG: tth:TTC0951 immunogenic protein; SPTR: C1XPC4 TRAP transporter solute receptor, TAXI family; TIGRFAM: TRAP transporter solute receptor, TAXI family; PFAM: NMT1/THI5 like; TIGRFAM: TRAP transporter solute receptor, TAXI family YP_003685881.1 COGs: COG4666 TRAP-type uncharacterized transport system fused permease components; InterPro IPR011853:IPR010656; KEGG: tth:TTC0952 transporter; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; SPTR: C1XPC3 TRAP transporter, 4TM/12TM fusion protein; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein YP_003685882.1 COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR013786:IPR006091:IPR006089:IPR009100:IPR 006090:IPR013764:IPR009075:IPR006092; KEGG: ttj:TTHA0789 putative glutaryl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: C1XPC2 Acyl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain YP_003685883.1 KEGG: dge:Dgeo_1165 hypothetical protein; SPTR: C1XPC1 Putative uncharacterized protein YP_003685884.1 COGs: COG1466 DNA polymerase III delta subunit; InterPro IPR008921:IPR005790:IPR010372; KEGG: ttj:TTHA0788 DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; SPTR: C1XPB9 DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III subunits gamma and tau domain III; DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit YP_003685885.1 COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: tth:TTC0433 TldD protein; PFAM: peptidase U62 modulator of DNA gyrase; SPTR: C1XPB8 Predicted Zn-dependent protease-like protein; PFAM: Putative modulator of DNA gyrase YP_003685886.1 KEGG: sus:Acid_4591 hypothetical protein; SPTR: C1XPB5 Putative uncharacterized protein; PFAM: Mycothiol maleylpyruvate isomerase N-terminal domain YP_003685887.1 COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR016040:IPR013149:IPR011032:IPR013154; KEGG: dge:Dgeo_0753 zinc-binding alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; SPTR: C1XPB4 Zn-dependent oxidoreductase, NADPH:quinone reductase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase YP_003685888.1 COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: dtu:Dtur_0860 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XPB3 ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_003685889.1 COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: kcr:Kcr_0930 ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XPB2 ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_003685890.1 COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: kcr:Kcr_0929 ABC-type dipeptide transport system, periplasmic component; PFAM: extracellular solute-binding protein family 5; SPTR: C1XPB1 ABC-type dipeptide transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_003685891.1 COGs: COG2059 Chromate transport protein ChrA; InterPro IPR014047:IPR003370; KEGG: sti:Sthe_2037 chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; SPTR: C1XPB0 Chromate transporter, chromate ion transporter family; TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; TIGRFAM: chromate transporter, chromate ion transporter (CHR) family YP_003685892.1 COGs: COG2355 Zn-dependent dipeptidase microsomal dipeptidase homolog; InterPro IPR008257; KEGG: ddr:Deide_11550 putative peptidase (renal dipeptidase); PFAM: peptidase M19 renal dipeptidase; SPTR: C1XPA9 Zn-dependent dipeptidase, microsomal dipeptidase; PFAM: Membrane dipeptidase (Peptidase family M19) YP_003685893.1 COGs: COG1994 Zn-dependent protease; InterPro IPR008915:IPR000644:IPR016483; KEGG: ttj:TTHA1316 hypothetical protein; PFAM: peptidase M50; CBS domain containing protein; SMART: CBS domain containing protein; SPTR: C1XPA8 Zn-dependent protease; PFAM: CBS domain; Peptidase family M50 YP_003685894.1 COGs: COG1052 Lactate dehydrogenase and related dehydrogenase; InterPro IPR016040:IPR006140:IPR006139; KEGG: tth:TTC0431 glycerate dehydrogenase/glyoxylate reductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; PRIAM: Glyoxylate reductase; SPTR: C1XPA7 Lactate dehydrogenase-like oxidoreductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_003685895.1 InterPro IPR018247; KEGG: pjd:Pjdr2_1609 hypothetical protein; SPTR: C1XPA6 Putative uncharacterized protein; PFAM: HupE / UreJ protein YP_003685896.1 InterPro IPR001440:IPR011990:IPR019734:IPR013026; KEGG: amr:AM1_2578 TPR domain-containing protein; PFAM: TPR repeat-containing protein; SPTR: C1XPA5 Tfp pilus assembly protein PilF YP_003685897.1 KEGG: amr:AM1_2579 hypothetical protein; SPTR: C1XPA4 Putative uncharacterized protein YP_003685898.1 KEGG: vcj:VCD_002670 hypothetical protein; SPTR: C1XPA3 Putative uncharacterized protein YP_003685899.1 COGs: COG0730 permease; InterPro IPR002781; KEGG: drm:Dred_1576 hypothetical protein; PFAM: protein of unknown function DUF81; SPTR: C1XPA2 Predicted permease; PFAM: Sulfite exporter TauE/SafE YP_003685900.1 COGs: COG3341 double-stranded RNA/RNA-DNA hybrid binding protein; InterPro IPR012337:IPR011320:IPR009027:IPR002156; KEGG: rbi:RB2501_07525 putative ribonuclease H1; SPTR: C1XPA1 Predicted double-stranded RNA/RNA-DNA hybrid binding protein; PFAM: RNase H; Caulimovirus viroplasmin YP_003685901.1 COGs: COG2345 transcriptional regulator protein; InterPro IPR001845:IPR011991; KEGG: ttj:TTHA0655 hypothetical protein; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: C1XPA0 Predicted transcriptional regulator, COG2345; PFAM: HTH domain YP_003685902.1 COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR000808:IPR019591:IPR002744; KEGG: ttj:TTHA0654 ATP-binding Mrp/Nbp35 family protein; PFAM: ATPase-like, ParA/MinD; protein of unknown function DUF59; SPTR: C1XP99 ATPase involved in chromosome partitioning; PFAM: ParA/MinD ATPase like; Domain of unknown function DUF59; Anion-transporting ATPase YP_003685903.1 COGs: COG5485 ester cyclase; InterPro IPR009959; KEGG: gvi:glr0227 hypothetical protein; PFAM: protein of unknown function DUF1486; SPTR: C1XP98 Predicted ester cyclase; PFAM: SnoaL-like polyketide cyclase YP_003685904.1 InterPro IPR001424; KEGG: ddr:Deide_15511 conserved hypothetical protein, precursor; SPTR: C1XP97 Putative uncharacterized protein YP_003685905.1 KEGG: aau:AAur_0785 hypothetical protein; SPTR: C1XP96 Putative uncharacterized protein; PFAM: Polyketide cyclase / dehydrase and lipid transport YP_003685906.1 COGs: COG3629 DNA-binding transcriptional activator of the SARP family; InterProIPR013105:IPR019734:IPR005158:IPR001867:IPR 013026:IPR001440:IPR011990; KEGG: rca:Rcas_3701 SARP family transcriptional regulator; PFAM: transcriptional activator domain; Tetratricopeptide TPR_2 repeat protein; transcriptional regulator domain protein; TPR repeat-containing protein; SPTR: C1XP95 DNA-binding transcriptional activator of the SARP family; PFAM: Bacterial transcriptional activator domain; IstB-like ATP binding protein YP_003685907.1 InterPro IPR020084:IPR015797:IPR000086; KEGG: ddr:Deide_06710 putative NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: C1XP94 Zn-finger containing NTP pyrophosphohydrolase; PFAM: NUDIX domain YP_003685908.1 COGs: COG0525 Valyl-tRNA synthetase; InterProIPR011321:IPR009008:IPR014729:IPR002300:IPR 019754:IPR013155:IPR019499:IPR009080:IPR001412:IPR002303:I PR010978; KEGG: ddr:Deide_06720 putative valine--tRNA ligase (valyl-tRNA synthetase); PFAM: aminoacyl-tRNA synthetase class Ia; tRNA synthetase valyl/leucyl anticodon-binding; Valyl-tRNA synthetase, class Ia, tRNA binding arm; SPTR: C1XP93 Valyl-tRNA synthetase; TIGRFAM: valyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Valyl tRNA synthetase tRNA binding arm; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type; valyl-tRNA synthetase YP_003685909.1 COGs: COG4339 conserved hypothetical protein; InterPro IPR009218; KEGG: tcu:Tcur_3747 metal dependent phosphohydrolase; SPTR: C1XP92 Uncharacterized conserved protein YP_003685910.1 KEGG: tth:TTC0442 hypothetical protein; SPTR: C1XP91 Putative uncharacterized protein YP_003685911.1 KEGG: tth:TTC0804 hypothetical protein; SPTR: C1XP90 Putative uncharacterized protein YP_003685912.1 COGs: COG0608 Single-stranded DNA-specific exonuclease; InterPro IPR003156:IPR001667:IPR004610; KEGG: ttj:TTHA1167 single-stranded DNA specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; SPTR: C1XP89 Exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: DHH family; DHHA1 domain; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ YP_003685913.1 KEGG: tth:TTC0802 hypothetical protein; SPTR: C1XP88 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1049) YP_003685914.1 COGs: COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; InterPro IPR013785:IPR011060:IPR006063:IPR006062; KEGG: ttj:TTHA1165 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; PRIAM:1-(5-phosphoribosyl)-5-((5-phosphoribosylamin o)methylideneamino)imidazole-4-carboxamideisomerase; SPTR: C1XP87 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: Histidine biosynthesis protein; TIGRFAM: hisA/hisF family protein; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YP_003685915.1 COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; InterPro IPR006035:IPR005924:IPR014033; KEGG: ttj:TTHA1496 arginase; PFAM: Arginase/agmatinase/formiminoglutamase; SPTR: C1XP86 Arginase; TIGRFAM: arginase; PFAM: Arginase family; TIGRFAM: arginase YP_003685916.1 COGs: COG1399 metal-binding possibly nucleic acid-binding protein; InterPro IPR003772; KEGG: ttj:TTHA0419 hypothetical protein; PFAM: protein of unknown function DUF177; SPTR: C1XP85 Predicted metal-binding protein, possibly nucleic-acid binding; PFAM: Uncharacterized ACR, COG1399 YP_003685917.1 COGs: COG0333 Ribosomal protein L32; InterPro IPR002677; KEGG: ttj:TTHA0418 50S ribosomal protein L32; PFAM: ribosomal L32p protein; SPTR: C1XP84 LSU ribosomal protein L32P; TIGRFAM: ribosomal protein L32; PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32 YP_003685918.1 COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); InterProIPR013747:IPR016039:IPR004655:IPR016038:IPR 013751; KEGG: ttj:TTHA0417 3-oxoacyl-[acyl carrier protein] synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase III; SPTR: C1XP83 3-oxoacyl-(Acyl-carrier-protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III YP_003685919.1 COGs: COG0331 (acyl-carrier-protein) S-malonyltransferase; InterProIPR016035:IPR014043:IPR004410:IPR016036:IPR 001227; KEGG: ttj:TTHA0416 malonyl CoA-[acyl carrier protein] transacylase; PFAM: Acyl transferase; SPTR: C1XP82 (Acyl-carrier-protein) S-malonyltransferase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase YP_003685920.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR016040:IPR002198:IPR002347:IPR011284; KEGG: ttj:TTHA0415 3-oxoacyl-[acyl carrier protein] reductase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: C1XKP5 3-oxoacyl-(Acyl-carrier-protein) reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short chain dehydrogenase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase YP_003685921.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198:IPR016040:IPR002347; KEGG: ter:Tery_4543 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: C1XP79 Putative uncharacterized protein; PFAM: short chain dehydrogenase YP_003685922.1 COGs: COG0236 Acyl carrier protein; InterPro IPR006163:IPR009081:IPR003231:IPR006162; KEGG: dge:Dgeo_0436 acyl carrier protein; PFAM: phosphopantetheine-binding; SPTR: C1XP78 Acyl carrier protein; TIGRFAM: acyl carrier protein; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein YP_003685923.1 COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterProIPR016038:IPR016039:IPR017568:IPR014030:IPR 014031; KEGG: ttj:TTHA0413 3-oxoacyl-[acyl carrier protein] synthase II; PFAM: Beta-ketoacyl synthase; SPTR: C1XP77 3-oxoacyl-(Acyl-carrier-protein) synthase II; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2 YP_003685924.1 COGs: COG0232 dGTP triphosphohydrolase; InterPro IPR003607:IPR006261:IPR006674; KEGG: ttj:TTHA0412 deoxyguanosinetriphosphate triphosphohydrolase, putative; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: C1XP76 Deoxyguanosinetriphosphate triphosphohydrolase, putative; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase, putative; uncharacterized domain HDIG YP_003685925.1 COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterPro IPR015424:IPR004839:IPR015422:IPR015421; KEGG: dge:Dgeo_2084 aminotransferase, class I and II; PFAM: aminotransferase class I and II; SPTR: C1XP75 Valine-pyruvate aminotransferase; PFAM: Aminotransferase class I and II YP_003685926.1 COGs: COG3004 Na+/H+ antiporter; InterPro IPR004670; KEGG: dge:Dgeo_2713 Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA; SPTR: C1XP74 Na+/H+ antiporter NhaA; TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter 1; TIGRFAM: Na+/H+ antiporter NhaA YP_003685927.1 InterPro IPR016118:IPR000326; KEGG: dge:Dgeo_2748 phosphoesterase, PA-phosphatase-related protein; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; SPTR: C1XP71 PAP2 superfamily protein; PFAM: PAP2 superfamily YP_003685928.1 COGs: COG2810 type IV restriction endonuclease; InterPro IPR007409; KEGG: dra:DR_0137 hypothetical protein; PFAM: protein of unknown function DUF450; SPTR: B7A6L8 Putative uncharacterized protein; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N) YP_003685929.1 COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: sco:SCP1.259 putative transposon transposase; PFAM: transposase mutator type; SPTR: C1XP69 Transposase; PFAM: Transposase, Mutator family YP_003685930.1 KEGG: Os02g0719100; hypothetical protein; SPTR: C1XP68 Putative uncharacterized protein YP_003685931.1 COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterProIPR006224:IPR020103:IPR002942:IPR006225:IPR 006145; KEGG: ttj:TTHA0408 ribosomal large subunit pseudouridine synthase D; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: C1XP67 Pseudouridine synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase, RluA family YP_003685932.1 COGs: COG1418 HD superfamily hydrolase; InterPro IPR003607:IPR006674; KEGG: tmz:Tmz1t_2132 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: C1XP66 Predicted HD superfamily hydrolase; PFAM: HD domain YP_003685933.1 COGs: COG2255 Holliday junction resolvasome helicase subunit; InterProIPR011991:IPR003593:IPR008823:IPR004605:IPR 008824:IPR003959; KEGG: ttj:TTHA0406 Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; SMART: AAA ATPase; SPTR: C1XP65 Holliday junction DNA helicase subunit RuvB; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, RuvB subunit YP_003685934.1 InterPro IPR011006; KEGG: ttj:TTHA0405 hypothetical protein; SPTR: C1XP64 Putative uncharacterized protein YP_003685935.1 COGs: COG3835 Sugar diacid utilization regulator; KEGG: sro:Sros_4288 transcriptional regulator, CdaR; SPTR: C1XP63 Putative uncharacterized protein YP_003685936.1 COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003593:IPR003439; KEGG: saq:Sare_1791 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XP62 ABC-type branched-chain amino acid transport systems, ATPase component; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter YP_003685937.1 COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: saq:Sare_1792 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XP61 ABC-type branched-chain amino acid transport systems, ATPase component; PFAM: ABC transporter YP_003685938.1 COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; KEGG: saq:Sare_1793 hypothetical protein; SPTR: C1XP60 ABC-type branched-chain amino acid transport system, periplasmic component YP_003685939.1 COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: stp:Strop_1804 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: C1XP59 Branched-chain amino acid ABC-type transport system, permease component; PFAM: Branched-chain amino acid transport system / permease component YP_003685940.1 COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: saq:Sare_1795 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: C1XP58 ABC-type branched-chain amino acid transport system, permease component; PFAM: Branched-chain amino acid transport system / permease component YP_003685941.1 InterPro IPR001647:IPR012287:IPR011075:IPR009057; KEGG: ttj:TTHA0101 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: C1XP57 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family YP_003685942.1 COGs: COG2377 molecular chaperone distantly related to HSP70-fold metalloprotease; InterPro IPR005338; KEGG: ddr:Deide_2p00310 putative anhydro-N-acetylmuramic acid kinase; PFAM: protein of unknown function UPF0075; SPTR: C1XP56 Molecular chaperone; PFAM: Uncharacterised protein family (UPF0075) YP_003685943.1 COGs: COG2188 Transcriptional regulators; InterPro IPR011663:IPR000524:IPR011991; KEGG: hoh:Hoch_1473 transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SPTR: C1XP55 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain YP_003685944.1 COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: tle:Tlet_1688 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 5; SPTR: C1XP54 ABC-type dipeptide transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_003685945.1 COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: sti:Sthe_1512 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XP53 ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_003685946.1 COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: sti:Sthe_0975 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XP52 ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_003685947.1 COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466:IPR012338; KEGG: dge:Dgeo_2506 beta-lactamase; PFAM: beta-lactamase; SPTR: C1XP51 Penicillin-binding protein, beta-lactamase class C; PFAM: Beta-lactamase YP_003685948.1 COGs: COG2103 sugar phosphate isomerase; InterPro IPR001347; KEGG: apt:APA01_04290 hypothetical protein; PFAM: sugar isomerase (SIS); SPTR: C1XP50 Predicted sugar phosphate isomerase, COG2103; PFAM: SIS domain; TIGRFAM: N-acetylmuramic acid 6-phosphate etherase YP_003685949.1 COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: dge:Dgeo_2510 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 5; SPTR: C1XP49 ABC-type dipeptide transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_003685950.1 COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: ddr:Deide_2p00280 putative dipeptide/oligopeptide/nickel ABC transporter, permease component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XP48 ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_003685951.1 COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: ddr:Deide_2p00270 putative dipeptide/oligopeptide/nickel ABC transporter, permease component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XP47 ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_003685952.1 COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914:IPR006311:IPR017909; KEGG: dge:Dgeo_2510 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 5; SPTR: C1XP46 ABC-type dipeptide transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003685953.1 COGs: COG3876 conserved hypothetical protein; InterPro IPR008302; KEGG: gtn:GTNG_1290 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: C1XP45 Uncharacterized conserved protein; PFAM: Protein of unknown function (DUF1343) YP_003685954.1 COGs: COG2385 Sporulation protein and related protein; InterPro IPR013486:IPR013693; KEGG: tle:Tlet_1668 SpoIID/LytB domain-containing protein; PFAM: Stage II sporulation D domain protein; SPTR: C1XP44 SpoIID/LytB domain protein; TIGRFAM: SpoIID/LytB domain protein; PFAM: Stage II sporulation protein; TIGRFAM: SpoIID/LytB domain YP_003685955.1 COGs: COG2971 N-acetylglucosamine kinase; InterPro IPR002731; KEGG: aha:AHA_3099 N-acetylglucosamine kinase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; SPTR: C1XP43 Predicted N-acetylglucosamine kinase; PFAM: BadF/BadG/BcrA/BcrD ATPase family YP_003685956.1 InterPro IPR000182:IPR016181; KEGG: bbe:BBR47_47060 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: C1XP42 Predicted acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_003685957.1 COGs: COG0274 Deoxyribose-phosphate aldolase; InterPro IPR013785:IPR011343:IPR002915; KEGG: tth:TTC0823 deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; PRIAM: Deoxyribose-phosphate aldolase; SPTR: C1XP40 Deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: DeoC/LacD family aldolase; TIGRFAM: deoxyribose-phosphate aldolase YP_003685958.1 COGs: COG1502 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; InterPro IPR001736; KEGG: tth:TTC0824 putative phosphoslipase; SPTR: C1XP39 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase YP_003685959.1 COGs: COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; InterPro IPR003697; KEGG: tth:TTC0825 maf protein; PFAM: Maf family protein; SPTR: C1XP38 MAF protein; TIGRFAM: maf protein; PFAM: Maf-like protein; TIGRFAM: MAF protein YP_003685960.1 COGs: COG1792 Cell shape-determining protein; InterPro IPR007221; KEGG: tth:TTC0826 rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; SPTR: C1XP37 Rod shape-determining protein MreC; PFAM: rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC YP_003685961.1 InterPro IPR007227; KEGG: tth:TTC0827 hypothetical protein; SPTR: C1XP36 Rod shape-determining protein MreD; TIGRFAM: rod shape-determining protein MreD; PFAM: rod shape-determining protein MreD; TIGRFAM: rod shape-determining protein MreD YP_003685962.1 COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311:IPR001460:IPR017790:IPR012338; KEGG: ttj:TTHA1191 penicillin-binding protein 2/cell division protein FtsI; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: C1XP35 Peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2 YP_003685963.1 COGs: COG0850 Septum formation inhibitor; InterPro IPR005526:IPR016098; KEGG: ttj:TTHA1192 septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; SPTR: C1XP34 Septum formation inhibitor; PFAM: Septum formation inhibitor MinC, C-terminal domain; TIGRFAM: septum site-determining protein MinC YP_003685964.1 COGs: COG2322 membrane protein; InterPro IPR007352; KEGG: ttj:TTHA1193 hypothetical protein; PFAM: protein of unknown function DUF420; SPTR: C1XP33 Predicted membrane protein, COG2322; PFAM: Protein of unknown function (DUF420) YP_003685965.1 KEGG: ttj:TTHA1194 hypothetical protein; SPTR: C1XP32 Putative uncharacterized protein YP_003685966.1 COGs: COG0073 EMAP domain; InterPro IPR012340:IPR002547:IPR016027:IPR008231; KEGG: tth:TTC0134 export-related chaperone; PFAM: t-RNA-binding domain protein; SPTR: C1XP31 Export-related chaperone CsaA; TIGRFAM: export-related chaperone CsaA; PFAM: Putative tRNA binding domain; TIGRFAM: export-related chaperone CsaA YP_003685967.1 KEGG: tth:TTC1924 hypothetical protein; SPTR: C1XP30 Putative uncharacterized protein YP_003685968.1 COGs: COG4712 conserved hypothetical protein; InterPro IPR007232; KEGG: ttj:TTHA0081 hypothetical protein; PFAM: Rad52/22 double-strand break repair protein; SPTR: C1XP29 Uncharacterized conserved protein; PFAM: Rad52/22 family double-strand break repair protein YP_003685969.1 InterPro IPR006146:IPR004843; KEGG: ttj:TTHA0082 phosphoesterase; PFAM: metallophosphoesterase; SPTR: C1XP28 Calcineurin-like phosphoesterase; PFAM: Calcineurin-like phosphoesterase YP_003685970.1 COGs: COG1329 Transcriptional regulators similar to M. xanthus CarD; InterPro IPR003711; KEGG: dhd:Dhaf_0392 transcriptional regulator, CarD family; PFAM: transcription factor CarD; SPTR: C1XP27 CarD-like transcriptional regulator; PFAM: CarD-like/TRCF domain YP_003685971.1 COGs: COG0030 Dimethyladenosine transferase (rRNA methylation); InterPro IPR020598:IPR011530:IPR020596:IPR001737; KEGG: tth:TTC1921 dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: Ribosomal RNA adenine methylase transferase-like; SPTR: C1XP26 Dimethyladenosine transferase; TIGRFAM: dimethyladenosine transferase; PFAM: Ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase YP_003685972.1 COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611:IPR002139:IPR002173; KEGG: ttj:TTHA0431 sugar kinase; PFAM: PfkB domain protein; SPTR: C1XP25 Sugar kinase, ribokinase; PFAM: pfkB family carbohydrate kinase YP_003685973.1 COGs: COG0118 Glutamine amidotransferase; InterPro IPR000991:IPR010139:IPR017926:IPR016226; KEGG: ttj:TTHA0430 imidazole glycerol phosphate synthase subunit HisH; PFAM: glutamine amidotransferase class-I; SPTR: C1XP24 Imidazole glycerol phosphate synthase subunit hisH; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: Glutamine amidotransferase class-I; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit YP_003685974.1 KEGG: dra:DR_0425 hypothetical protein; SPTR: C1XP23 Putative uncharacterized protein YP_003685975.1 COGs: COG0131 Imidazoleglycerol-phosphate dehydratase; InterPro IPR020565:IPR020568:IPR000807; KEGG: tth:TTC0061 imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase; PRIAM: Imidazoleglycerol-phosphate dehydratase; SPTR: C1XP22 Imidazoleglycerol-phosphate dehydratase; PFAM: Imidazoleglycerol-phosphate dehydratase YP_003685976.1 COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterProIPR015421:IPR001917:IPR015424:IPR005861:IPR 004839; KEGG: ttj:TTHA0428 histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; SPTR: C1XP21 Histidinol phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase YP_003685977.1 KEGG: aau:AAur_3142 S-layer domain-containing protein; SPTR: C1XP20 Putative uncharacterized protein YP_003685978.1 KEGG: ttj:TTHA0197 S-layer-like protein; SPTR: C1XP19 Putative uncharacterized protein YP_003685979.1 KEGG: dge:Dgeo_0950 hypothetical protein; SPTR: C1XP18 Putative uncharacterized protein YP_003685980.1 COGs: COG0466 ATP-dependent Lon protease; InterProIPR004815:IPR020568:IPR003111:IPR003959:IPR 008269:IPR001984:IPR003593; KEGG: ttj:TTHA1111 alternative ATP-dependent protease La (Lon protease); PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; PRIAM: Endopeptidase La; SMART: peptidase S16 lon domain protein; AAA ATPase; SPTR: C1XP17 ATP-dependent proteinase; TIGRFAM: ATP-dependent protease La; PFAM: ATP-dependent protease La (LON) domain; ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease La YP_003685981.1 COGs: COG4371 membrane protein; InterPro IPR010903; KEGG: ttj:TTHA1112 hypothetical protein; PFAM: protein of unknown function DUF1517; SPTR: C1XP16 Predicted membrane protein, COG4371; PFAM: Protein of unknown function (DUF1517) YP_003685982.1 COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR016181:IPR000182; KEGG: gym:GYMC10_2330 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: C1XP15 Acetyltransferase, ribosomal protein N-acetylase; PFAM: Acetyltransferase (GNAT) family YP_003685983.1 COGs: COG2326 conserved hypothetical protein; InterPro IPR005660:IPR016898; KEGG: aba:Acid345_0575 polyphosphate:AMP phosphotransferase; PFAM: protein of unknown function DUF344; SPTR: C1XP14 Polyphosphate:AMP phosphotransferase; PFAM: Polyphosphate kinase 2 (PPK2) YP_003685984.1 COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; InterPro IPR003607:IPR006674; KEGG: ddr:Deide_03700 putative diguanylate cyclase(GGDEF)/metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: C1XP13 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; PFAM: HD domain; TIGRFAM: Dyp-type peroxidase family; uncharacterized domain HDIG YP_003685985.1 InterPro IPR002781; KEGG: ttj:TTHA0835 hypothetical protein; PFAM: protein of unknown function DUF81; SPTR: C1XP12 Predicted permease; PFAM: Sulfite exporter TauE/SafE YP_003685986.1 COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763:IPR001307; KEGG: ttj:TTHA0836 rhodanese-like domain-containing protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: C1XP11 Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain YP_003685987.1 COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: tro:trd_A0835 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: C1XP10 Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain YP_003685988.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001763:IPR001307:IPR001279; KEGG: ttj:TTHA0837 metallo-beta-lactamase family protein; PFAM: Rhodanese domain protein; SMART: beta-lactamase domain protein; Rhodanese domain protein; SPTR: C1XP09 Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain YP_003685989.1 COGs: COG3634 Alkyl hydroperoxide reductase large subunit; InterPro IPR012336:IPR011903:IPR012335; KEGG: ttj:TTHA0838 glutaredoxin-like protein; SPTR: C1XP08 Glutaredoxin-like domain protein; TIGRFAM: glutaredoxin-like domain protein; TIGRFAM: Glutaredoxin-like domain protein YP_003685990.1 COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: rrs:RoseRS_2962 rhodanese domain-containing protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: C1XP07 Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain YP_003685991.1 InterProIPR017936:IPR017937:IPR012336:IPR000866:IPR 012335; KEGG: swi:Swit_3733 redoxin domain-containing protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: C1XP06 Thiol-disulfide isomerase-like thioredoxin; PFAM: Redoxin YP_003685992.1 COGs: COG1937 conserved hypothetical protein; InterPro IPR003735; KEGG: dge:Dgeo_2676 hypothetical protein; PFAM: protein of unknown function DUF156; SPTR: C1XP05 Uncharacterized conserved protein; PFAM: Uncharacterised BCR, COG1937 YP_003685993.1 COGs: COG1272 membrane protein hemolysin III homolog; InterPro IPR004254:IPR005744; KEGG: tth:TTC1137 putative hemolysin; PFAM: Hly-III family protein; SPTR: C1XP04 Channel protein, hemolysin III family; TIGRFAM: channel protein, hemolysin III family; PFAM: Haemolysin-III related; TIGRFAM: channel protein, hemolysin III family YP_003685994.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR005829:IPR011006:IPR001789:IPR001867; KEGG: ttj:TTHA1502 response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: C1XP03 Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_003685995.1 COGs: COG0642 Signal transduction histidine kinase; InterProIPR009082:IPR003660:IPR003594:IPR003661:IPR 005467:IPR004358; KEGG: tth:TTC1139 two-component system histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: C1XP02 Sensor protein; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003685996.1 COGs: COG3877 conserved hypothetical protein; InterPro IPR018658; KEGG: sth:STH174 hypothetical protein; PFAM: Protein of unknown function DUF2089; SPTR: C1XP01 Uncharacterized conserved protein; PFAM: Protein of unknown function(DUF2089) YP_003685997.1 InterPro IPR011701:IPR016196; KEGG: rer:RER_27030 siderophore export protein; PFAM: major facilitator superfamily MFS_1; SPTR: C1XP00 Major Facilitator Superfamily transporter; PFAM: Major Facilitator Superfamily YP_003685998.1 KEGG: saq:Sare_3114 transglutaminase domain-containing protein; SPTR: C1XNZ9 Putative uncharacterized protein YP_003685999.1 KEGG: hor:Hore_06880 hypothetical protein; SPTR: C1XNZ8 Putative uncharacterized protein YP_003686000.1 KEGG: ddr:Deide_22830 hypothetical protein; SPTR: C1XNZ7 Putative uncharacterized protein YP_003686001.1 SPTR: C1XNZ6 Putative uncharacterized protein YP_003686002.1 KEGG: aoe:Clos_0020 hypothetical protein; SPTR: C1XNZ5 Putative uncharacterized protein YP_003686003.1 KEGG: wol:WD0290 hypothetical protein; SPTR: C1XNZ4 Putative uncharacterized protein YP_003686004.1 COGs: COG1164 Oligoendopeptidase F; InterPro IPR011977:IPR001567; KEGG: tth:TTC1501 oligoendopeptidase F; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; SPTR: C1XNZ3 Oligoendopeptidase, pepF/M3 family; TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: Oligopeptidase F; Peptidase family M3; TIGRFAM: oligoendopeptidase, pepF/M3 family YP_003686005.1 COGs: COG0824 thioesterase; InterPro IPR006683; KEGG: tth:TTC1494 esterase; PFAM: thioesterase superfamily protein; SPTR: C1XNZ2 Predicted thioesterase; PFAM: Thioesterase superfamily; TIGRFAM: conserved hypothetical protein TIGR00051 YP_003686006.1 COGs: COG2230 Cyclopropane fatty acid synthase and related methyltransferase; InterPro IPR003333; KEGG: dge:Dgeo_0050 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; SPTR: C1XNZ1 Methyltransferase, cyclopropane fatty acid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase YP_003686007.1 KEGG: sgr:SGR_427 hypothetical protein; SPTR: C1XNY9 Putative uncharacterized protein YP_003686008.1 InterPro IPR012337:IPR002559; KEGG: cau:Caur_2446 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: C1XPT2 Transposase family protein; PFAM: Transposase DDE domain YP_003686009.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: bbe:BBR47_44220 pimeloyl-CoA synthesis protein; PFAM: alpha/beta hydrolase fold; SPTR: C1XNY7 Predicted hydrolase or acyltransferase of alpha/beta superfamily; PFAM: alpha/beta hydrolase fold YP_003686010.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR016040:IPR000683:IPR004104; KEGG: bbe:BBR47_17150 putative oxidoreductase; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: C1XNY6 Predicted dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain YP_003686011.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR016040:IPR000683:IPR004104; KEGG: ddr:Deide_3p01930 putative NADH-dependent dyhydrogenase, putative inositol 2-dehydrogenase; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: C1XNY5 Predicted dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain YP_003686012.1 COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: ddr:Deide_3p01940 putative sugar ABC transporter, permease component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XNY4 Carbohydrate ABC transporter membrane protein 2, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component YP_003686013.1 COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: ddr:Deide_3p01950 putative sugar ABC transporter, permease component, putative sn-glycerol-3-phosphate transport system permease protein UgpA; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XNY2 Carbohydrate ABC transporter membrane protein 1, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component YP_003686014.1 COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059:IPR006061; KEGG: ddr:Deide_3p01960 putative sugar ABC transporter, periplasmic component; PFAM: extracellular solute-binding protein family 1; SPTR: C1XNY0 Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: Bacterial extracellular solute-binding protein YP_003686015.1 COGs: COG0550 Topoisomerase IA; InterProIPR013824:IPR013826:IPR000380:IPR006154:IPR 003601:IPR003602:IPR005733:IPR006171:IPR013497:IPR013498; KEGG: ttj:TTHA0074 DNA topoisomerase IA; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; DNA topoisomerase type IA zn finger domain protein; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein; SPTR: C1XK22 DNA topoisomerase; TIGRFAM: DNA topoisomerase I; PFAM: Toprim domain; Topoisomerase DNA binding C4 zinc finger; DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial YP_003686016.1 KEGG: ttj:TTHA0073 hypothetical protein; SPTR: C1XZ85 Putative uncharacterized protein YP_003686017.1 InterPro IPR001123; KEGG: mka:MK1358 putative component of a threonine efflux system; PFAM: Lysine exporter protein (LYSE/YGGA); SPTR: C6MN49 Lysine exporter protein (LYSE/YGGA); PFAM: LysE type translocator YP_003686018.1 COGs: COG1432 conserved hypothetical protein; InterPro IPR002790; KEGG: ttj:TTHA0189 hypothetical protein; PFAM: protein of unknown function DUF88; SPTR: C1XZ84 Uncharacterized conserved protein; PFAM: Protein of unknown function DUF88 YP_003686019.1 KEGG: dge:Dgeo_1382 hypothetical protein; SPTR: C1XZ82 Putative uncharacterized protein YP_003686020.1 COGs: COG5504 Zn-dependent protease; InterPro IPR018728; KEGG: ssa:SSA_0367 hypothetical protein; PFAM: Protein of unknown function DUF2268, Zn-dependent protease-related; SPTR: C1XZ81 Predicted Zn-dependent protease; PFAM: Predicted Zn-dependent protease (DUF2268) YP_003686021.1 KEGG: tth:TTC0663 hypothetical protein; SPTR: C1XZ78 Transposase family protein YP_003686022.1 InterPro IPR012337:IPR002559; KEGG: cau:Caur_2446 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: C1XPT2 Transposase family protein; PFAM: Transposase DDE domain YP_003686023.1 COGs: COG5421 Transposase; InterPro IPR012337:IPR002559; KEGG: dsy:DSY0689 hypothetical protein; PFAM: transposase IS4 family protein; SPTR: C1XVD6 Transposase; PFAM: Transposase DDE domain YP_003686024.1 KEGG: tth:TTC0663 hypothetical protein; SPTR: C1XZ76 Putative uncharacterized protein; PFAM: Peptidase M66; CARDB YP_003686025.1 COGs: COG0263 Glutamate 5-kinase; InterProIPR011529:IPR001048:IPR001057:IPR002478:IPR 005715:IPR019797:IPR015947; KEGG: sfu:Sfum_3643 glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; PRIAM: Glutamate 5-kinase; SMART: PUA domain containing protein; SPTR: C1XZ75 Glutamate 5-kinase; TIGRFAM: glutamate 5-kinase; PFAM: PUA domain; Amino acid kinase family; TIGRFAM: glutamate 5-kinase; uncharacterized domain 2 YP_003686026.1 COGs: COG0014 Gamma-glutamyl phosphate reductase; InterProIPR016162:IPR016163:IPR020593:IPR016161:IPR 012134:IPR000965:IPR015590; KEGG: ttj:TTHA1928 gamma-glutamyl phosphate reductase; PFAM: Aldehyde Dehydrogenase; SPTR: C1XM48 Glutamate-5-semialdehyde dehydrogenase; TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: Aldehyde dehydrogenase family; TIGRFAM: gamma-glutamyl phosphate reductase YP_003686027.1 COGs: COG1295 membrane protein; InterPro IPR004664:IPR017039; KEGG: tth:TTC1566 hypothetical protein; PFAM: ribonuclease BN; SPTR: C1XZ72 Predicted membrane protein, COG1295; TIGRFAM: ribonuclease BN; PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN) YP_003686028.1 COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509:IPR011330; KEGG: dge:Dgeo_2787 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: C1XZ71 Predicted xylanase/chitin deacetylase; PFAM: Polysaccharide deacetylase YP_003686029.1 COGs: COG4299 conserved hypothetical protein; InterPro IPR019259; KEGG: dra:DR_1602 hypothetical protein; PFAM: Protein of unknown function DUF2261, transmembrane; SPTR: C1XZ70 Uncharacterized conserved protein YP_003686030.1 COGs: COG0222 Ribosomal protein L7/L12; InterPro IPR008932:IPR000206:IPR014719:IPR013823; KEGG: ttj:TTHA0210 50S ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; SPTR: C1XZ69 LSU ribosomal protein L12P; TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12 C-terminal domain; TIGRFAM: ribosomal protein L7/L12 YP_003686031.1 COGs: COG0244 Ribosomal protein L10; InterPro IPR001790; KEGG: ttj:TTHA0209 50S ribosomal protein L10; PFAM: ribosomal protein L10; SPTR: C1XZ68 LSU ribosomal protein L10P; PFAM: Ribosomal protein L10 YP_003686032.1 InterPro IPR012337:IPR009057:IPR001584; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XZ67 Integrase family protein; PFAM: Integrase core domain YP_003686033.1 COGs: COG2421 acetamidase/formamidase; InterPro IPR004304; KEGG: ara:Arad_8681 acetamidase/formamidase protein; PFAM: Acetamidase/Formamidase; SPTR: C1XZ66 Predicted acetamidase/formamidase; PFAM: Acetamidase/Formamidase family YP_003686034.1 COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; InterPro IPR008274:IPR000674; KEGG: tro:trd_1847 carbon monoxide dehydrogenase large chain; PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; SPTR: C1XZ65 Xanthine dehydrogenase, molybdenum binding subunit apoprotein; PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; TIGRFAM: carbon-monoxide dehydrogenase, large subunit YP_003686035.1 COGs: COG3483 Tryptophan 2 3-dioxygenase (vermilion); InterPro IPR017485:IPR004981; KEGG: dra:DR_A0339 tryptophan 2,3-dioxygenase, putative; PFAM: tryptophan 23-dioxygenase; SPTR: C1XZ64 Tryptophan 2,3-dioxygenase; TIGRFAM: tryptophan 2,3-dioxygenase; PFAM: Tryptophan 2,3-dioxygenase; TIGRFAM: tryptophan 2,3-dioxygenase YP_003686036.1 InterPro IPR002860; KEGG: gau:GAU_3646 hypothetical protein; PFAM: glycosyl hydrolase BNR repeat-containing protein; SPTR: C1XZ63 BNR/Asp-box repeat protein; PFAM: BNR/Asp-box repeat YP_003686037.1 InterPro IPR016155; KEGG: aca:ACP_1949 hypothetical protein; SPTR: C1XZ62 Putative uncharacterized protein YP_003686038.1 COGs: COG2378 transcriptional regulator protein; InterPro IPR018356:IPR001034:IPR013196; KEGG: sti:Sthe_2390 helix-turn-helix type 11 domain protein; PFAM: Helix-turn-helix type 11 domain protein; SPTR: C1XZ61 Predicted transcriptional regulator, COG2378; PFAM: HTH domain YP_003686039.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR016040:IPR002198:IPR002347; KEGG: scl:sce3666 short chain dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: C1XZ60 Putative uncharacterized protein; PFAM: short chain dehydrogenase YP_003686040.1 COGs: COG0081 Ribosomal protein L1; InterPro IPR002143:IPR005878:IPR016094; KEGG: ttj:TTHA0246 50S ribosomal protein L1; PFAM: ribosomal protein L1; SPTR: C1XZ58 Ribosomal protein L1; TIGRFAM: ribosomal protein L1; PFAM: Ribosomal protein L1p/L10e family; TIGRFAM: ribosomal protein L1, bacterial/chloroplast YP_003686041.1 COGs: COG0080 Ribosomal protein L11; InterProIPR020784:IPR020783:IPR006519:IPR000911:IPR 020785; KEGG: ttj:TTHA0247 50S ribosomal protein L11; PFAM: Ribosomal protein L11-like; SMART: ribosomal protein L11; SPTR: C1XZ57 LSU ribosomal protein L11P; TIGRFAM: ribosomal protein L11; PFAM: Ribosomal protein L11, RNA binding domain; Ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11 YP_003686042.1 COGs: COG0250 Transcription antiterminator; InterProIPR006645:IPR001062:IPR015869:IPR005824:IPR 008991:IPR014722; KEGG: ttj:TTHA0248 transcription antitermination protein NusG; PFAM: NGN domain protein; KOW domain protein; SMART: NGN domain protein; KOW domain protein; SPTR: C1XZ56 Transcription antitermination protein nusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: Transcription termination factor nusG; KOW motif; TIGRFAM: transcription termination/antitermination factor NusG YP_003686043.1 InterPro IPR001901:IPR005807; KEGG: ttj:TTHA0249 preprotein translocase subunit SecE; PFAM: protein secE/sec61-gamma protein; SPTR: C1XZ55 Protein translocase subunit secE/sec61 gamma; TIGRFAM: preprotein translocase, SecE subunit; PFAM: SecE/Sec61-gamma subunits of protein translocation complex; TIGRFAM: preprotein translocase, SecE subunit, bacterial YP_003686044.1 InterPro IPR001705:IPR018264; KEGG: ttj:TTHA0250 50S ribosomal protein L33; PFAM: ribosomal protein L33; SPTR: C1XZ54 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type YP_003686045.1 COGs: COG0050 GTPase - translation elongation factors; InterProIPR009001:IPR005225:IPR000795:IPR009000:IPR 004160:IPR004541:IPR004161; KEGG: tth:TTC1734 elongation factor Tu; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; SPTR: C1XTN4 Elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor Tu C-terminal domain; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU YP_003686046.1 InterPro IPR012337:IPR009057:IPR001584; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XZ52 Integrase family protein; PFAM: Integrase core domain YP_003686047.1 COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; InterPro IPR011108; KEGG: tth:TTC1733 cleavage and polyadenylation specificity factor, 100 kDa subunit; PFAM: RNA-metabolising metallo-beta-lactamase; SPTR: C1XLT8 Predicted exonuclease of the beta-lactamase fold involved in RNA processing; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; Beta-Casp domain YP_003686048.1 InterPro IPR000601; KEGG: ddr:Deide_23300 hypothetical protein; SPTR: C1XU66 Putative uncharacterized protein (Fragment) YP_003686049.1 COGs: COG3427 conserved hypothetical protein; InterPro IPR010419; KEGG: dge:Dgeo_0213 carbon monoxide dehydrogenase subunit G; PFAM: carbon monoxide dehydrogenase subunit G; SPTR: C1XU65 Uncharacterized conserved protein; PFAM: Carbon monoxide dehydrogenase subunit G (CoxG) YP_003686050.1 COGs: COG2068 Uncharacterized MobA-related protein; KEGG: dra:DR_A0004 hypothetical protein; SPTR: C1XU64 Uncharacterized MobA-like protein, COG2068 YP_003686051.1 COGs: COG2080 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs; InterPro IPR001041:IPR002888:IPR012675; KEGG: chl:Chy400_3738 (2Fe-2S)-binding domain protein; PFAM: [2Fe-2S]-binding domain protein; ferredoxin; SPTR: C1XU63 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein; PFAM: 2Fe-2S iron-sulfur cluster binding domain; [2Fe-2S] binding domain YP_003686052.1 COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; InterPro IPR008274:IPR000674; KEGG: dge:Dgeo_1947 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; SPTR: C1XU62 Xanthine dehydrogenase, molybdenum binding subunit apoprotein; PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; TIGRFAM: carbon-monoxide dehydrogenase, large subunit YP_003686053.1 COGs: COG1319 Aerobic-type carbon monoxide dehydrogenase middle subunit CoxM/CutM homologs; InterProIPR005107:IPR016166:IPR002346:IPR016169:IPR 016167; KEGG: dge:Dgeo_1946 molybdopterin dehydrogenase, FAD-binding; PFAM: molybdopterin dehydrogenase FAD-binding; SPTR: C1XU61 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein; PFAM: FAD binding domain in molybdopterin dehydrogenase; CO dehydrogenase flavoprotein C-terminal domain YP_003686054.1 COGs: COG0714 MoxR-like ATPase; InterPro IPR003593:IPR011704; KEGG: rmr:Rmar_2377 ATPase associated with various cellular activities AAA_5; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; SPTR: C1XU60 MoxR-like ATPase; PFAM: AAA domain (dynein-related subfamily) YP_003686055.1 COGs: COG3552 Protein containing von Willebrand factor type A (vWA) domain; InterPro IPR011195:IPR002035:IPR008912; KEGG: cag:Cagg_2833 VWA containing CoxE family protein; PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor type A; SPTR: C1XU59 Protein containing von Willebrand factor type A (VWA) domain; PFAM: VWA domain containing CoxE-like protein YP_003686056.1 COGs: COG1975 Xanthine and CO dehydrogenase maturation factor XdhC/CoxF family; InterPro IPR003777; KEGG: dge:Dgeo_0385 hypothetical protein; PFAM: protein of unknown function DUF182; PRIAM: Xanthine dehydrogenase; SPTR: C1XU58 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family; PFAM: XdhC and CoxI family YP_003686057.1 COGs: COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: ttj:TTHA1305 molybdopterin-guanine dinucleotide biosynthesis protein A; SPTR: C1XU57 Molybdenum cofactor guanylyltransferase YP_003686058.1 COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594:IPR005467:IPR004358:IPR011712; KEGG: ttj:TTHA1181 sensor histidine kinase; PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; PRIAM: Histidine kinase; SMART: ATP-binding region ATPase domain protein; SPTR: C1XU56 Histidine kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_003686059.1 KEGG: rrs:RoseRS_2078 hypothetical protein; SPTR: C1XU55 Putative uncharacterized protein YP_003686060.1 COGs: COG0565 rRNA methylase; InterPro IPR004384:IPR001537; KEGG: ttj:TTHA1182 hypothetical protein; PFAM: tRNA/rRNA methyltransferase (SpoU); SPTR: C1XU54 RNA methyltransferase, TrmH family, group 1; TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: SpoU rRNA Methylase family; TIGRFAM: RNA methyltransferase, TrmH family, group 1 YP_003686061.1 COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); InterPro IPR012338:IPR001264:IPR001460; KEGG: ttj:TTHA1183 penicillin-binding protein 1B; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; SPTR: C1XU53 Membrane carboxypeptidase (Penicillin-binding protein); PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase YP_003686062.1 InterPro IPR001789:IPR011006; KEGG: ttj:TTHA1184 putative response regulator; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: C1XU52 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; PFAM: Response regulator receiver domain YP_003686063.1 InterPro IPR012337:IPR002559; KEGG: cau:Caur_2446 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: C1XPT2 Transposase family protein; PFAM: Transposase DDE domain YP_003686064.1 COGs: COG0240 Glycerol-3-phosphate dehydrogenase; InterProIPR016040:IPR006168:IPR011128:IPR013328:IPR 008927:IPR006109; KEGG: ttj:TTHA1740 glycerol-3-phosphate dehydrogenase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; PRIAM: Glycerol-3-phosphate dehydrogenase (NAD(P)(+)); SPTR: C1XU48 Glycerol-3-phosphate dehydrogenase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YP_003686065.1 KEGG: tth:TTC1379 hypothetical protein; SPTR: C1XU47 Putative uncharacterized protein YP_003686066.1 COGs: COG0461 Orotate phosphoribosyltransferase; InterPro IPR006273:IPR000836; KEGG: tth:TTC1380 orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; SPTR: C1XU46 Orotate phosphoribosyltransferase; TIGRFAM: orotate phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: orotate phosphoribosyltransferase, Thermus family; orotate phosphoribosyltransferase YP_003686067.1 COGs: COG0284 Orotidine-5'-phosphate decarboxylase; InterProIPR018089:IPR013785:IPR001754:IPR011995:IPR 011060; KEGG: tth:TTC1381 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; PRIAM: Orotidine-5'-phosphate decarboxylase; SPTR: C1XU45 Orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 2 YP_003686068.1 InterPro IPR012337:IPR009057:IPR001584; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XU44 Integrase family protein; PFAM: Integrase core domain YP_003686069.1 InterPro IPR003856; KEGG: tth:TTC0274 hypothetical protein; PFAM: lipopolysaccharide biosynthesis protein; SPTR: C1XU43 Chain length determinant protein; PFAM: Chain length determinant protein YP_003686070.1 COGs: COG1764 redox protein regulator of disulfide bond formation; InterPro IPR015946:IPR003718:IPR019904; KEGG: rmr:Rmar_1364 OsmC family protein; PFAM: OsmC family protein; SPTR: C1XU42 Predicted redox protein, regulator of disulfide bond formation; TIGRFAM: peroxiredoxin, OsmC subfamily; PFAM: OsmC-like protein; TIGRFAM: peroxiredoxin, OsmC subfamily YP_003686071.1 InterPro IPR017849:IPR017850:IPR006124; KEGG: ttj:TTHA1627 hypothetical protein; PFAM: metalloenzyme domain protein; SPTR: C1XU41 Phosphoglyceromutase; PFAM: Metalloenzyme superfamily YP_003686072.1 KEGG: mlu:Mlut_07050 hypothetical protein; SPTR: C1XU40 Putative uncharacterized protein YP_003686073.1 InterPro IPR012337:IPR009057:IPR001584; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XWM1 Uncharacterized conserved protein (DUF2191)/integrase family protein; PFAM: Integrase core domain YP_003686074.1 COGs: COG1840 ABC-type Fe3+ transport system periplasmic component; InterPro IPR006059; KEGG: sru:SRU_2400 extracellular solute-binding protein, putative; PFAM: extracellular solute-binding protein family 1; SPTR: C1XU38 ABC-type Fe3+ transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein YP_003686075.1 COGs: COG3489 periplasmic lipoprotein; InterPro IPR018976; KEGG: syf:Synpcc7942_1462 imelysin; PFAM: Peptidase M75, Imelysin; SPTR: C1XU37 Predicted periplasmic lipoprotein; PFAM: Imelysin YP_003686076.1 COGs: COG3488 thiol oxidoreductase; InterPro IPR009056:IPR010538; KEGG: cyb:CYB_2271 hypothetical protein; PFAM: protein of unknown function DUF1111; SPTR: C1XU36 Predicted thiol oxidoreductase; PFAM: Protein of unknown function (DUF1111) YP_003686077.1 COGs: COG1178 ABC-type Fe3+ transport system permease component; InterPro IPR000515; KEGG: sru:SRU_2399 ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XU35 ABC-type Fe3+ transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_003686078.1 COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterProIPR017871:IPR008995:IPR003593:IPR003439:IPR 013611; KEGG: tth:TTC1266 iron(III)-transport ATP-binding protein SfuC; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; SPTR: C1XU34 ABC-type spermidine/putrescine transport system, ATPase component; PFAM: ABC transporter; TOBE domain YP_003686079.1 COGs: COG3548 integral membrane protein; InterPro IPR010617; KEGG: bxe:Bxe_C0541 hypothetical protein; PFAM: protein of unknown function DUF1211; SPTR: C1XU33 Predicted integral membrane protein, COG3548; PFAM: Protein of unknown function (DUF1211) YP_003686080.1 COGs: COG0101 Pseudouridylate synthase; InterProIPR001406:IPR020095:IPR020094:IPR020097:IPR 020103; KEGG: ttj:TTHA1631 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; PRIAM: tRNA-pseudouridine synthase I; SPTR: C1XU32 Pseudouridylate synthase; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; TIGRFAM: pseudouridylate synthase I YP_003686081.1 COGs: COG4370 conserved hypothetical protein; InterPro IPR019994; KEGG: dra:DR_2625 hypothetical protein; SPTR: C1XU31 Uncharacterized conserved protein; TIGRFAM: conserved hypothetical protein; TIGRFAM: conserved hypothetical protein YP_003686082.1 KEGG: hypothetical protein; SPTR: C1XU30 Putative uncharacterized protein YP_003686083.1 COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: ttj:TTHA1632 peptide ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XU29 ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_003686084.1 COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: ttj:TTHA1633 peptide ABC transporter permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XU28 ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_003686085.1 COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: ttj:TTHA1634 peptide ABC transporter, peptide-binding protein; PFAM: extracellular solute-binding protein family 5; SPTR: C1XU27 Extracellular solute-binding protein, family 5; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_003686086.1 InterPro IPR012337:IPR009057:IPR001584; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XPF2 Integrase family protein; PFAM: Integrase core domain YP_003686087.1 COGs: COG0316 conserved hypothetical protein; InterPro IPR000361:IPR017870:IPR016092; KEGG: ttj:TTHA1635 iron-sulfur cluster biosynthesis protein IscA; PFAM: HesB/YadR/YfhF-family protein; SPTR: C1XU25 Iron-sulfur cluster assembly accessory protein; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein YP_003686088.1 COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000994; KEGG: ttj:TTHA1636 Xaa-Pro aminopeptidase; PFAM: peptidase M24; SPTR: C1XU24 Xaa-Pro aminopeptidase; PFAM: Metallopeptidase family M24 YP_003686089.1 COGs: COG0462 Phosphoribosylpyrophosphate synthetase; InterPro IPR000836:IPR005946; KEGG: ttj:TTHA1637 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; PRIAM: Ribose-phosphate diphosphokinase; SPTR: C1XU23 Ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase YP_003686090.1 KEGG: ttj:TTHA0652 hypothetical protein; SPTR: C1XU22 Putative uncharacterized protein YP_003686091.1 COGs: COG3307 Lipid A core - O-antigen ligase; InterPro IPR007016; KEGG: dae:Dtox_0160 YD repeat protein; PFAM: O-antigen polymerase; SPTR: C1XU21 Lipid A core-O-antigen ligase-like enyme; PFAM: O-Antigen ligase YP_003686092.1 COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterProIPR016040:IPR003362:IPR017475:IPR017472:IPR 006151; KEGG: cyn:Cyan7425_4214 undecaprenyl-phosphate galactose phosphotransferase, WbaP; PFAM: sugar transferase; Shikimate/quinate 5-dehydrogenase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: C1XU20 Undecaprenyl-phosphate galactose phosphotransferase, WbaP/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Undecaprenyl-phosphate galactose phosphotransferase, WbaP; PFAM: Bacterial sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Undecaprenyl-phosphate galactose phosphotransferase, WbaP YP_003686093.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: avi:Avi_1661 glycosyl transferase; PFAM: glycosyl transferase group 1; SPTR: C1XU19 Glycosyltransferase; PFAM: Glycosyl transferases group 1 YP_003686094.1 COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: pvi:Cvib_1070 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: C1XU18 Predicted glycosyltransferase; PFAM: Glycosyl transferase family 2 YP_003686095.1 InterPro IPR007016; KEGG: pvi:Cvib_1071 O-antigen polymerase; PFAM: O-antigen polymerase; SPTR: C1XU17 O-Antigen Polymerase; PFAM: O-Antigen ligase YP_003686096.1 COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: pvi:Cvib_1070 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: C1XU16 Predicted glycosyltransferase; PFAM: Glycosyl transferase family 2 YP_003686097.1 COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: gka:GK3315 glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: C1XU15 Predicted glycosyltransferase; PFAM: Glycosyl transferase family 2 YP_003686098.1 COGs: COG0562 UDP-galactopyranose mutase; InterPro IPR016040:IPR004379:IPR006076:IPR015899; KEGG: tth:TTC0529 UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like; FAD dependent oxidoreductase; PRIAM: UDP-galactopyranose mutase; SPTR: C1XU14 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase YP_003686099.1 COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: ttj:TTHA0649 putative O-antigen transporter; PFAM: polysaccharide biosynthesis protein; SPTR: C1XU13 Membrane protein involved in the export of O-antigen and teichoic acid; PFAM: Polysaccharide biosynthesis protein YP_003686100.1 InterPro IPR002934; KEGG: tth:TTC0058 hypothetical protein; PFAM: DNA polymerase beta domain protein region; SPTR: C1XU12 Nucleotidyltransferase family protein; PFAM: Nucleotidyltransferase domain YP_003686101.1 COGs: COG2250 conserved hypothetical protein related to C-terminal domain of eukaryotic chaperone SACSIN; InterPro IPR007842; KEGG: ttj:TTHA0427 hypothetical protein; PFAM: HEPN domain protein; SMART: HEPN domain protein; SPTR: C1XU11 Uncharacterized conserved protein similar to C-terminal domain of eukaryotic chaperone SACSIN; PFAM: HEPN domain YP_003686102.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterProIPR016040:IPR001509:IPR006141:IPR003587:IPR 006142:IPR003586:IPR004042; KEGG: ter:Tery_2478 protein splicing site; PFAM: NAD-dependent epimerase/dehydratase; SMART: Hedgehog/intein hint domain protein; SPTR: C1XU08 NAD dependent epimerase/dehydratase family protein; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: intein N-terminal splicing region; intein C-terminal splicing region YP_003686103.1 COGs: COG1004 UDP-glucose 6-dehydrogenase; InterProIPR016040:IPR017476:IPR014027:IPR014026:IPR 013328:IPR008927:IPR001732; KEGG: sus:Acid_6697 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: C1XU07 Nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase YP_003686104.1 COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR016040:IPR005888:IPR001509; KEGG: rca:Rcas_3431 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: C1XU06 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase YP_003686105.1 COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR011051:IPR000888:IPR014710; KEGG: ddr:Deide_20315 putative dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; SPTR: C1XU05 dTDP-4-dehydrorhamnose 3,5-epimerase-like enzyme; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase YP_003686106.1 COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR016040:IPR005913; KEGG: dra:DR_A0044 dTDP-4-rhamnose reductase-related protein; PFAM: dTDP-4-dehydrorhamnose reductase; SPTR: C1XU04 dTDP-4-dehydrorhamnose reductase; PFAM: RmlD substrate binding domain; TIGRFAM: dTDP-4-dehydrorhamnose reductase YP_003686107.1 COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR011004:IPR005908:IPR005835; KEGG: tth:TTC1762 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; SPTR: C1XU03 Glucose-1-phosphate thymidylylransferase, long form; TIGRFAM: glucose-1-phosphate thymidyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylylransferase, long form YP_003686108.1 COGs: COG0836 Mannose-1-phosphate guanylyltransferase; InterProIPR011051:IPR001538:IPR005835:IPR006375:IPR 014710; KEGG: afr:AFE_3293 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; SPTR: C1XU02 Mannose-1-phosphate guanylyltransferase (GDP); TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Nucleotidyl transferase; Mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_003686109.1 COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086:IPR020084:IPR015797:IPR020476; KEGG: ttj:TTHA1939 MutT/NUDIX family protein; PFAM: NUDIX hydrolase; SPTR: C1XU01 ADP-ribose pyrophosphatase; PFAM: NUDIX domain YP_003686110.1 COGs: COG0216 Protein chain release factor A; InterPro IPR005139:IPR004373:IPR000352; KEGG: ttj:TTHA1940 peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; SPTR: C1XU00 Bacterial peptide chain release factor 1 (BRF-1); TIGRFAM: peptide chain release factor 1; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 1 YP_003686111.1 COGs: COG1321 Mn-dependent transcriptional regulator protein; InterPro IPR001367:IPR008988:IPR007167; KEGG: rmr:Rmar_1279 iron (metal) dependent repressor, DtxR family; PFAM: iron dependent repressor; FeoA family protein; SMART: iron dependent repressor; SPTR: C1XTZ9 Mn-dependent transcriptional regulator; PFAM: FeoA domain; Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain YP_003686112.1 COGs: COG1914 Mn2+ and Fe2+ transporter of the NRAMP family; InterPro IPR001046; KEGG: dge:Dgeo_0709 manganese transport protein MntH; PFAM: natural resistance-associated macrophage protein; SPTR: C1XTZ8 Natural resistance-associated macrophage protein metal ion transporter NRAMP; TIGRFAM: Mn2+/Fe2+ transporter, NRAMP family; PFAM: Natural resistance-associated macrophage protein; TIGRFAM: NRAMP (natural resistance-associated macrophage protein) metal ion transporters YP_003686113.1 KEGG: ttj:TTHA1195 hypothetical protein; SPTR: C1XTZ7 Putative uncharacterized protein YP_003686114.1 KEGG: dge:Dgeo_2068 hypothetical protein; SPTR: C1XTZ6 Putative uncharacterized protein YP_003686115.1 InterPro IPR012337:IPR009057:IPR001584; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XTZ5 Integrase family protein; PFAM: Integrase core domain YP_003686116.1 KEGG: ttj:TTHA1870 hypothetical protein; SPTR: C1XTZ4 Putative uncharacterized protein YP_003686117.1 KEGG: hypothetical LOC431480; SPTR: C1XTZ3 Putative uncharacterized protein YP_003686118.1 KEGG: app:CAP2UW1_1124 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: C1XTZ2 Putative uncharacterized protein YP_003686119.1 COGs: COG0475 Kef-type K+ transport systems membrane components; InterPro IPR006153; KEGG: tye:THEYE_A1811 Kef-type K+ transport system, membrane component; PFAM: sodium/hydrogen exchanger; SPTR: C1XTZ1 Kef-type K+ transport system, membrane component; PFAM: Sodium/hydrogen exchanger family YP_003686120.1 COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006015:IPR014729:IPR006016; KEGG: min:Minf_2154 nucleotide-binding protein, UspA family; PFAM: UspA domain protein; SPTR: C1XTZ0 Universal stress protein UspA-like protein; PFAM: Universal stress protein family YP_003686121.1 COGs: COG0239 Integral membrane protein possibly involved in chromosome condensation; InterPro IPR003691; KEGG: tth:TTC1648 integral membrane protein; PFAM: Camphor resistance CrcB protein; SPTR: C1XTY9 Protein crcB homolog; TIGRFAM: CrcB protein; PFAM: CrcB-like protein; TIGRFAM: crcB protein YP_003686122.1 COGs: COG1993 conserved hypothetical protein; InterPro IPR003793:IPR015867:IPR011322; KEGG: ttj:TTHA0334 hypothetical protein; PFAM: protein of unknown function DUF190; SPTR: C1XTY8 Uncharacterized conserved protein; PFAM: Uncharacterized ACR, COG1993 YP_003686123.1 InterPro IPR016196:IPR011701; KEGG: rxy:Rxyl_0517 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: C1XTY7 Major Facilitator Superfamily transporter; PFAM: Major Facilitator Superfamily YP_003686124.1 KEGG: pap:PSPA7_2528 hypothetical protein; SPTR: C1XTY6 Putative uncharacterized protein YP_003686125.1 COGs: COG0249 Mismatch repair ATPase (MutS family); InterPro IPR000432; KEGG: mpd:MCP_2478 putative DNA mismatch repair protein; PFAM: DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; SPTR: C1XTY5 Mismatch repair ATPase (MutS family); PFAM: MutS domain V YP_003686126.1 COGs: COG0249 Mismatch repair ATPase (MutS family); InterPro IPR000432; KEGG: mpd:MCP_2479 putative DNA mismatch repair protein; PFAM: DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; SPTR: C1XTY4 Mismatch repair ATPase (MutS family); PFAM: MutS domain V YP_003686127.1 COGs: COG2855 membrane protein; InterPro IPR018383; KEGG: mxa:MXAN_4312 hypothetical protein; PFAM: Uncharacterised protein family UPF0324; SPTR: C1XTY3 Predicted membrane protein, COG2855; PFAM: Conserved hypothetical protein 698; TIGRFAM: conserved hypothetical integral membrane protein YP_003686128.1 COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: dge:Dgeo_2840 LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1XTY2 Transcriptional regulator, COG0583; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family YP_003686129.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR013324:IPR013249:IPR013325:IPR007627:IPR 014284; KEGG: dge:Dgeo_0606 ECF subfamily RNA polymerase sigma-24 factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: C1XTY1 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_003686130.1 InterPro IPR018764; KEGG: tth:TT_P0165 putative anti-sigmaE protein; PFAM: Anti-sigma K factor RskA; SPTR: C1XTY0 Uncharacterized conserved protein (DUF2337); PFAM: Anti-sigma-K factor rskA YP_003686131.1 InterProIPR011051:IPR010462:IPR006311:IPR013096:IPR 014710; KEGG: rme:Rmet_5012 cupin 2, barrel; PFAM: Cupin 2 conserved barrel domain protein; SPTR: C1XTX9 Cupin domain-containing protein; PFAM: Cupin domain YP_003686132.1 COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR010095:IPR001959; KEGG: rmr:Rmar_1189 transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; putative transposase IS891/IS1136/IS1341 family; SPTR: C1XZF0 Transposase, IS605 OrfB family, central region; TIGRFAM: transposase, IS605 OrfB family; PFAM: Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region YP_003686133.1 COGs: COG3794 Plastocyanin; InterPro IPR008972:IPR000923; KEGG: cai:Caci_2525 blue (type 1) copper domain protein; PFAM: blue (type 1) copper domain protein; SPTR: C1XTX6 Plastocyanin; PFAM: Copper binding proteins, plastocyanin/azurin family YP_003686134.1 COGs: COG2041 Sulfite oxidase; InterPro IPR000572:IPR005066:IPR014756:IPR008335; KEGG: min:Minf_0673 sulfite oxidase or related enzyme; PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; SPTR: C1XTX5 Sulfite oxidase-like oxidoreductase; PFAM: Mo-co oxidoreductase dimerisation domain; Oxidoreductase molybdopterin binding domain YP_003686135.1 InterPro IPR009056; KEGG: dge:Dgeo_2837 hypothetical protein; SPTR: C1XTX4 Putative uncharacterized protein YP_003686136.1 InterPro IPR009056:IPR003088; KEGG: ttj:TTHA1423 cytochrome c-552 precursor; PFAM: cytochrome c class I; SPTR: C1XTX3 Cytochrome c553; PFAM: Cytochrome c YP_003686137.1 InterPro IPR002781; KEGG: cpc:Cpar_1739 hypothetical protein; PFAM: protein of unknown function DUF81; SPTR: C1XTX2 Putative uncharacterized protein; PFAM: Sulfite exporter TauE/SafE YP_003686138.1 COGs: COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog); InterProIPR017958:IPR006075:IPR003789:IPR006107:IPR 018027:IPR004413; KEGG: ttj:TTHA0366 aspartyl/glutamyl-tRNA amidotransferase subunit B; PFAM: GatB region; GatB central domain protein; Asn/Gln amidotransferase; SMART: Asn/Gln amidotransferase; SPTR: C1XTX1 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/GatE catalytic domain; GatB domain; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit YP_003686139.1 COGs: COG0150 Phosphoribosylaminoimidazole (AIR) synthetase; InterPro IPR010918:IPR016188:IPR004733:IPR000728; KEGG: tth:TTC1619 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; PRIAM: Phosphoribosylformylglycinamidine cyclo-ligase; SPTR: C1XTX0 Phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylaminoimidazole synthetase YP_003686140.1 COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078:IPR001345; KEGG: tth:TTC1618 phosphoglycerate mutase; PFAM: Phosphoglycerate mutase; SMART: Phosphoglycerate mutase; SPTR: C1XTW9 Phosphoglycerate mutase; PFAM: Phosphoglycerate mutase family YP_003686141.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198:IPR016040:IPR002347; KEGG: ttj:TTHA0369 short chain dehydrogenase/reductase family oxidoreductase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: C1XTW8 Putative uncharacterized protein; PFAM: short chain dehydrogenase YP_003686142.1 COGs: COG3408 Glycogen debranching protein; InterPro IPR008928:IPR010401; KEGG: dge:Dgeo_0748 amylo-alpha-1,6-glucosidase; PFAM: Amylo-alpha-16-glucosidase; SPTR: C1XTW7 Glycogen debranching enzyme; PFAM: Amylo-alpha-1,6-glucosidase YP_003686143.1 COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: sme:SMa1362 putative inner-membrane permease; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XTW6 Carbohydrate ABC transporter membrane protein 2, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component YP_003686144.1 COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: dge:Dgeo_0750 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XTW5 Carbohydrate ABC transporter membrane protein 1, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component YP_003686145.1 COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: hor:Hore_00380 extracellular solute-binding protein family 1; PFAM: extracellular solute-binding protein family 1; SPTR: C1XTW4 Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: Bacterial extracellular solute-binding protein YP_003686146.1 COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761:IPR010982; KEGG: dge:Dgeo_0752 LacI family transcription regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; SPTR: C1XTW3 Transcriptional regulator; PFAM: Bacterial regulatory proteins, lacI family; family YP_003686147.1 COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR011004:IPR005908:IPR005835:IPR001451; KEGG: tth:TTC1762 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; SPTR: C1XTW2 Glucose-1-phosphate thymidylylransferase, long form; TIGRFAM: glucose-1-phosphate thymidyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylylransferase, long form YP_003686148.1 InterPro IPR014004:IPR002482:IPR007055:IPR018392; KEGG: dra:DR_0888 hypothetical protein; PFAM: Peptidoglycan-binding lysin domain; transport-associated; SMART: Peptidoglycan-binding LysM; Transport-associated and nodulation region; SPTR: C1XTW1 Uncharacterized protein containing LysM domain; PFAM: Putative phospholipid-binding domain; LysM domain YP_003686149.1 COGs: COG4719 conserved hypothetical protein; KEGG: ttj:TTHB179 hypothetical protein; SPTR: C1XTW0 Uncharacterized conserved protein YP_003686150.1 KEGG: tmz:Tmz1t_3805 transposase IS4 family protein; SPTR: C1XRV2 Putative uncharacterized protein; PFAM: Transposase DDE domain YP_003686151.1 InterPro IPR001434; KEGG: ttj:TTHB181 hypothetical protein; PFAM: protein of unknown function DUF11; SPTR: C1XTV4 Conserved repeat protein; TIGRFAM: conserved repeat domain protein; PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain YP_003686152.1 InterPro IPR001434; KEGG: ttj:TTHB182 hypothetical protein; PFAM: protein of unknown function DUF11; SPTR: C1XTV2 Putative uncharacterized protein; TIGRFAM: conserved repeat domain YP_003686153.1 InterPro IPR008985:IPR001434; KEGG: ttj:TTHB183 hypothetical protein; PFAM: protein of unknown function DUF11; SPTR: C1XTV1 Conserved repeat protein; TIGRFAM: conserved repeat domain protein; PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain YP_003686154.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001867:IPR001789:IPR011991:IPR011006; KEGG: ttj:TTHA1722 putative response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein; SPTR: C1XTV0 Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_003686155.1 COGs: COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenase large terminal subunit; InterPro IPR017941; KEGG: lpf:lpl2143 hypothetical protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: C1XTU9 Ring-hydroxylating dioxygenase, large terminal subunit; PFAM: Rieske [2Fe-2S] domain YP_003686156.1 COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638; KEGG: mes:Meso_3149 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; SPTR: C1XTU8 Amino acid ABC transporter substrate-binding protein, PAAT family; PFAM: Bacterial extracellular solute-binding proteins, family 3 YP_003686157.1 COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR000515:IPR010065; KEGG: mes:Meso_3148 polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XTU7 Amino acid ABC transporter membrane protein, PAAT family; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family YP_003686158.1 COGs: COG1126 ABC-type polar amino acid transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: mes:Meso_3147 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XTU6 Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter YP_003686159.1 COGs: COG1364 N-acetylglutamate synthase (N-acetylornithine aminotransferase); InterPro IPR002813:IPR016117; KEGG: tth:TTC0835 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; PFAM: arginine biosynthesis protein ArgJ; PRIAM: Amino-acid N-acetyltransferase; SPTR: C1XTU5 Glutamate N-acetyltransferase/amino-acid acetyltransferase; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: ArgJ family; TIGRFAM: glutamate N-acetyltransferase/amino-acid acetyltransferase YP_003686160.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: ddr:Deide_11680 putative glycosyltransferase; PFAM: glycosyl transferase group 1; SPTR: C1XTU4 Glycosyltransferase; PFAM: Starch synthase catalytic domain; Glycosyl transferases group 1 YP_003686161.1 COGs: COG0002 Acetylglutamate semialdehyde dehydrogenase; InterPro IPR010136:IPR000706:IPR016040:IPR000534; KEGG: dge:Dgeo_1604 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; PRIAM: N-acetyl-gamma-glutamyl-phosphate reductase; SMART: Semialdehyde dehydrogenase NAD - binding; SPTR: C1XTU3 N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form YP_003686162.1 COGs: COG0078 Ornithine carbamoyltransferase; InterPro IPR006132:IPR006131:IPR002292:IPR006130; KEGG: dge:Dgeo_1605 ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; SPTR: C1XTU2 Ornithine carbamoyltransferase; TIGRFAM: ornithine carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: ornithine carbamoyltransferase YP_003686163.1 InterPro IPR000835:IPR011991; KEGG: tth:TTC0626 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1XTU1 Transcriptional regulator; PFAM: MarR family YP_003686164.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR004638:IPR001411:IPR011701:IPR016196; KEGG: tth:TTC0625 multidrug resistance protein B; PFAM: major facilitator superfamily MFS_1; SPTR: C1XTU0 Drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily YP_003686165.1 COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: ttj:TTHA1200 hypothetical protein; PFAM: LmbE family protein; SPTR: C1XTT9 Uncharacterized LmbE-like protein; PFAM: GlcNAc-PI de-N-acetylase YP_003686166.1 KEGG: ter:Tery_2459 clostridial hydrophobic; SPTR: C1XTT8 Putative uncharacterized protein YP_003686167.1 COGs: COG0344 membrane protein; InterPro IPR003811:IPR020788; KEGG: tth:TTC0841 hypothetical protein; PFAM: protein of unknown function DUF205; SPTR: C1XTT7 Acyl-phosphate glycerol-3-phosphate acyltransferase; PFAM: Domain of unknown function (DUF205); TIGRFAM: conserved hypothetical integral membrane protein TIGR00023 YP_003686168.1 COGs: COG3694 ABC-type uncharacterized transport system permease component; InterPro IPR010390; KEGG: tth:TTC0842 ABC transporter permease protein; PFAM: protein of unknown function DUF990; SPTR: C1XTT6 ABC-type uncharacterized transport system, permease component; PFAM: Protein of unknown function (DUF990) YP_003686169.1 COGs: COG0259 Pyridoxamine-phosphate oxidase; InterProIPR009002:IPR019740:IPR012349:IPR000659:IPR 011576:IPR019576; KEGG: mpt:Mpe_A2931 pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; Pyridoxine 5'-phosphate oxidase, dimerisation-like; PRIAM: Pyridoxal 5'-phosphate synthase; SPTR: C1XTT5 Pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: Pyridoxamine 5'-phosphate oxidase; Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region; TIGRFAM: pyridoxamine-phosphate oxidase YP_003686170.1 COGs: COG4586 ABC-type uncharacterized transport system ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: ttj:TTHA1205 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XTT4 ABC-type uncharacterized transport system, ATPase component; PFAM: ABC transporter YP_003686171.1 COGs: COG0578 Glycerol-3-phosphate dehydrogenase; InterPro IPR000447:IPR006076; KEGG: gbm:Gbem_3375 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: C1XTT3 Glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase YP_003686172.1 COGs: COG4587 ABC-type uncharacterized transport system permease component; InterPro IPR010390; KEGG: cyn:Cyan7425_2498 protein of unknown function DUF990; PFAM: protein of unknown function DUF990; SPTR: C1XTT2 ABC-type uncharacterized transport system, permease component; PFAM: Protein of unknown function (DUF990) YP_003686173.1 InterPro IPR019734:IPR011990:IPR013026; KEGG: ttj:TTHA0421 hypothetical protein; SPTR: C1XTT1 Tetratricopeptide repeat protein YP_003686174.1 COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR003593:IPR003439:IPR017871:IPR004602; KEGG: ttj:TTHA1440 excinuclease ABC subunit A; PFAM: ABC transporter related; SPTR: C1XTT0 Excinuclease ABC subunit A; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit YP_003686175.1 InterPro IPR016090:IPR015141; KEGG: similar to secretory phospholipase A2; PFAM: Prokaryotic phospholipase A2; SPTR: C1XTS9 Prokaryotic phospholipase A2; PFAM: Prokaryotic phospholipase A2 YP_003686176.1 KEGG: dra:DR_2265 hypothetical protein; SPTR: C1XTS8 Putative uncharacterized protein YP_003686177.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701:IPR016196; KEGG: ddr:Deide_23010 putative major facilitator superfamily protein; putative membrane protein; PFAM: major facilitator superfamily MFS_1; SPTR: C1XTS7 Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily YP_003686178.1 COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151; KEGG: dra:DR_1308 protease, putative; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; peptidase S41; SPTR: C1XTS6 Periplasmic protease; PFAM: Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc) YP_003686179.1 COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151; KEGG: dge:Dgeo_0277 peptidase S41; PFAM: peptidase S41; SMART: PDZ/DHR/GLGF domain protein; SPTR: C1XTS5 Periplasmic protease; PFAM: Peptidase family S41; TIGRFAM: C-terminal peptidase (prc) YP_003686180.1 KEGG: gym:GYMC10_6115 hypothetical protein; SPTR: C1XTS4 Putative uncharacterized protein YP_003686181.1 COGs: COG2385 Sporulation protein and related protein; InterPro IPR013486:IPR013693; KEGG: tth:TTC1200 stage II sporulation protein D; PFAM: Stage II sporulation D domain protein; SPTR: C1XTS3 SpoIID/LytB domain protein; TIGRFAM: SpoIID/LytB domain protein; PFAM: Stage II sporulation protein; TIGRFAM: SpoIID/LytB domain YP_003686182.1 COGs: COG4365 conserved hypothetical protein; InterPro IPR011199; KEGG: ttj:TTHA1566 hypothetical protein; PFAM: protein of unknown function UCP012535; SPTR: C1XTS2 Uncharacterized conserved protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2317) YP_003686183.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterProIPR012318:IPR018490:IPR001808:IPR000595:IPR 011991:IPR014710; KEGG: dge:Dgeo_1275 Crp/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; SPTR: C1XTS1 cAMP-binding protein; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain YP_003686184.1 COGs: COG2107 periplasmic solute-binding protein; InterPro IPR003794; KEGG: ttj:TTHA1568 hypothetical protein; PFAM: protein of unknown function DUF191; SPTR: C1XTS0 Predicted periplasmic solute-binding protein; PFAM: Putative periplasminc binding protein (DUF178) YP_003686185.1 KEGG: smd:Smed_0368 short chain dehydrogenase; SPTR: C1XTR9 Putative uncharacterized protein YP_003686186.1 InterPro IPR015927:IPR019759:IPR011056; KEGG: pfs:PFLU3605 SOS regulatory protein; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: C1XTR8 SOS response transcriptional repressor, RecA-mediated autopeptidase; PFAM: Peptidase S24-like YP_003686187.1 KEGG: ddr:Deide_01250 conserved hypothetical protein, precursor; SPTR: C1XTR7 Putative uncharacterized protein YP_003686188.1 InterPro IPR009056; KEGG: sus:Acid_3236 quinoprotein glucose dehydrogenase; SPTR: C1XTR6 Putative uncharacterized protein; PFAM: Cytochrome c YP_003686189.1 KEGG: bfa:Bfae_29670 alpha-L-rhamnosidase; SPTR: C1XTR5 Putative uncharacterized protein YP_003686190.1 InterPro IPR000424:IPR012340:IPR016027:IPR011344; KEGG: tth:TTC1741 single-strand DNA binding protein (ssb); PFAM: single-strand binding protein/Primosomal replication protein n; SPTR: C1XTR4 Single-stranded DNA-binding protein; TIGRFAM: single-strand binding protein; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb) YP_003686191.1 KEGG: bcl:ABC2751 septation ring formation regulator EzrA; SPTR: C1XTR3 Putative uncharacterized protein YP_003686192.1 KEGG: ppd:Ppro_3759 hypothetical protein; SPTR: C1XTR2 Putative uncharacterized protein YP_003686193.1 KEGG: hypothetical protein; SPTR: C1XTR1 Putative uncharacterized protein YP_003686194.1 COGs: COG1643 HrpA-like helicase; InterProIPR013689:IPR001650:IPR007502:IPR014021:IPR 010225:IPR014001; KEGG: dge:Dgeo_0976 ATP-dependent helicase HrpB; PFAM: Helicase ATP-dependent domain protein; helicase domain protein; helicase-associated domain protein; SMART: helicase domain protein; DEAD-like helicase ; helicase-associated domain protein; SPTR: C1XTR0 ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: Helicase conserved C-terminal domain; Helicase associated domain (HA2); ATP-dependent helicase C-terminal; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent helicase HrpB YP_003686195.1 InterPro IPR003675; KEGG: mta:Moth_1913 abortive infection protein; PFAM: Abortive infection protein; SPTR: C1XTQ9 CAAX amino terminal protease family; PFAM: CAAX amino terminal protease family YP_003686196.1 COGs: COG3548 integral membrane protein; InterPro IPR010617; KEGG: rxy:Rxyl_2895 hypothetical protein; PFAM: protein of unknown function DUF1211; SPTR: C1XTQ8 Predicted integral membrane protein, COG3548; PFAM: Protein of unknown function (DUF1211) YP_003686197.1 InterPro IPR004360; KEGG: bce:BC1116 glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: C1XTQ7 Lactoylglutathione lyase-like lyase YP_003686198.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterProIPR001789:IPR000792:IPR011006:IPR016032:IPR 011991; KEGG: dra:DR_1558 DNA-binding response regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: C1XTQ6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_003686199.1 COGs: COG4585 Signal transduction histidine kinase; InterProIPR000014:IPR003018:IPR003594:IPR013767:IPR 011712:IPR005467; KEGG: rca:Rcas_4226 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; GAF domain protein; PAS fold domain protein; PRIAM: Histidine kinase; SMART: GAF domain protein; PAS domain containing protein; ATP-binding region ATPase domain protein; SPTR: C1XTQ5 PAS domain S-box protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase; GAF domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box YP_003686200.1 COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034:IPR018356:IPR014036; KEGG: dge:Dgeo_2456 DeoR family transcriptional regulator; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; SPTR: C1XTQ4 Transcriptional regulator of sugar metabolism; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain YP_003686201.1 COGs: COG1129 ABC-type sugar transport system ATPase component; InterPro IPR003593:IPR003439:IPR017871:IPR015861; KEGG: sma:SAV_7416 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XTQ3 Monosaccharide ABC transporter ATP-binding protein, CUT2 family; PFAM: ABC transporter YP_003686202.1 COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: sus:Acid_7825 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: C1XTQ2 Monosaccharide ABC transporter membrane protein, CUT2 family; PFAM: Branched-chain amino acid transport system / permease component YP_003686203.1 COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: rxy:Rxyl_1682 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: C1XTQ1 Monosaccharide ABC transporter membrane protein, CUT2 family; PFAM: Branched-chain amino acid transport system / permease component YP_003686204.1 COGs: COG1879 ABC-type sugar transport system periplasmic component; KEGG: rxy:Rxyl_1681 putative secreted solute-binding lipoprotein; SPTR: C1XTQ0 Monosaccharide ABC transporter substrate-binding protein, CUT2 family; TIGRFAM: rhamnose ABC transporter, rhamnose-binding protein YP_003686205.1 COGs: COG4288 conserved hypothetical protein; InterPro IPR009794; KEGG: csc:Csac_1017 hypothetical protein; PFAM: protein of unknown function DUF1362; SPTR: C1XTP9 Uncharacterized conserved protein; PFAM: Anabaena sensory rhodopsin transducer YP_003686206.1 COGs: COG4952 sugar isomerase; InterPro IPR013457:IPR013022:IPR012307; KEGG: dge:Dgeo_2455 rhamnose isomerase-related protein; PFAM: Xylose isomerase domain protein TIM barrel; SPTR: C1XTP8 L-rhamnose isomerase; TIGRFAM: L-rhamnose isomerase; PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: L-rhamnose isomerase, Streptomyces subtype YP_003686207.1 COGs: COG3347 conserved hypothetical protein; InterProIPR016040:IPR001303:IPR002198:IPR013454:IPR 002347; KEGG: dge:Dgeo_2454 short chain dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; class II aldolase/adducin family protein; SPTR: C1XTP7 Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: Class II Aldolase and Adducin N-terminal domain; short chain dehydrogenase; TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase YP_003686208.1 COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR018485; KEGG: ddr:Deide_3p01560 putative rhamnulokinase; PFAM: Carbohydrate kinase, FGGY-like; SPTR: C1XTP6 Pentulose/hexulose kinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: rhamnulokinase YP_003686209.1 InterPro IPR002559; KEGG: ddr:Deide_3p01971 putative transposase; PFAM: transposase IS4 family protein; SPTR: C1XTM9 Transposase family protein YP_003686210.1 COGs: COG1251 NAD(P)H-nitrite reductase; InterPro IPR013027:IPR016156:IPR004099; KEGG: mca:MCA2776 pyridine nucleotide-disulphide oxidoreductase family protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: C1XTM8 NAD(P)H-nitrite reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_003686211.1 COGs: COG1846 Transcriptional regulators; InterPro IPR000835:IPR001845:IPR011991; KEGG: amr:AM1_2389 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; regulatory protein ArsR; SPTR: C1XTM7 Transcriptional regulator, MarR family; PFAM: MarR family YP_003686212.1 InterPro IPR012102:IPR012292:IPR009050; KEGG: mba:Mbar_A2927 hypothetical protein; SPTR: C1XTM6 Putative uncharacterized protein; PFAM: Protoglobin YP_003686213.1 COGs: COG0383 Alpha-mannosidase; InterPro IPR011682:IPR000602:IPR015341:IPR011330; KEGG: ddr:Deide_1p00530 putative alpha-mannosidase; PFAM: glycoside hydrolase family 38; glycosyl hydrolase 38 domain protein; Glycoside hydrolase family 38 central region; PRIAM: Alpha-mannosidase; SMART: Glycoside hydrolase family 38 central region; SPTR: C1XTM5 Alpha-mannosidase; PFAM: Glycosyl hydrolases family 38 C-terminal domain; Glycosyl hydrolases family 38 N-terminal domain; Alpha mannosidase, middle domain YP_003686214.1 COGs: COG0631 Serine/threonine protein phosphatase; InterPro IPR001932:IPR014045:IPR011009; KEGG: dra:DR_A0334 hypothetical protein; PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; SPTR: C1XTM4 Serine/threonine protein phosphatase; PFAM: Protein phosphatase 2C YP_003686215.1 InterPro IPR000253:IPR008984; KEGG: dra:DR_A0333 FraH-related protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; SPTR: C1XTM3 FHA domain-containing protein; PFAM: FHA domain YP_003686216.1 COGs: COG0515 Serine/threonine protein kinase; InterProIPR020635:IPR002290:IPR017442:IPR017441:IPR 008271:IPR011009:IPR000719; KEGG: dra:DR_A0332 protein kinase, putative; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, subgroup, catalytic domain; SPTR: C1XTM2 Serine/threonine protein kinase; PFAM: Protein kinase domain YP_003686217.1 COGs: COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain; InterPro IPR002035; KEGG: dra:DR_A0331 hypothetical protein; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: C1XTM1 Uncharacterized protein containing a von Willebrand factor type A (VWA) domain; PFAM: von Willebrand factor type A domain YP_003686218.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XTM0 Integrase family protein; PFAM: Integrase core domain YP_003686219.1 COGs: COG0548 Acetylglutamate kinase; InterPro IPR001048:IPR004662:IPR011148; KEGG: tth:TTC1586 acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; PRIAM: Acetylglutamate kinase; SPTR: C1XTL9 N-acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: Amino acid kinase family; TIGRFAM: acetylglutamate kinase YP_003686220.1 COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013149:IPR016040:IPR011032:IPR013154; KEGG: ttj:TTHA0466 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; SPTR: C1XTL8 Zn-dependent oxidoreductase, NADPH:quinone reductase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase YP_003686221.1 KEGG: mpo:Mpop_3729 ATP-dependent chaperone ClpB; SPTR: C1XTL7 Putative uncharacterized protein YP_003686222.1 COGs: COG1432 conserved hypothetical protein; InterPro IPR002790; KEGG: ddr:Deide_18580 hypothetical protein; PFAM: protein of unknown function DUF88; SPTR: C1XTL6 Uncharacterized conserved protein; PFAM: Protein of unknown function DUF88 YP_003686223.1 KEGG: ttj:TTHA0464 hypothetical protein; SPTR: C1XTL5 Putative uncharacterized protein YP_003686224.1 KEGG: azo:azo3625 hypothetical protein; SPTR: C1XTL4 Putative uncharacterized protein YP_003686225.1 COGs: COG3478 nucleic-acid-binding protein containing a Zn-ribbon domain; InterPro IPR018652; KEGG: gym:GYMC10_5242 protein of unknown function DUF2082, nucleic-acid-binding, Zn-ribbon domain protein; PFAM: Protein of unknown function DUF2082, nucleic-acid-binding, Zn-ribbon domain; SPTR: C1XTL3 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain; PFAM: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) YP_003686226.1 InterPro IPR007295; KEGG: tth:TTC0094 cysteinyl-tRNA synthetase; PFAM: protein of unknown function DUF402; SPTR: C1XTL2 Uncharacterized domain/protein associated with RNAses G and E; PFAM: Protein of unknown function (DUF402) YP_003686227.1 COGs: COG0203 Ribosomal protein L17; InterPro IPR000456; KEGG: ttj:TTHA1663 50S ribosomal protein L17; PFAM: ribosomal protein L17; SPTR: C1XTL1 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17 YP_003686228.1 COGs: COG0202 DNA-directed RNA polymerase alpha subunit/40 kD subunit; InterProIPR011263:IPR011261:IPR011262:IPR011260:IPR 009025:IPR011773; KEGG: ttj:TTHA1664 DNA-directed RNA polymerase subunit alpha; PFAM: RNA polymerase insert; RNA polymerase dimerisation; RNA polymerase alpha subunit domain protein; SMART: RNA polymerase RpoA/D/Rpb3-type; SPTR: C1XTL0 DNA-directed RNA polymerase subunit alpha; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain; RNA polymerase Rpb3/RpoA insert domain; Bacterial RNA polymerase, alpha chain C terminal domain; TIGRFAM: DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type YP_003686229.1 COGs: COG0522 Ribosomal protein S4 and related protein; InterPro IPR005709:IPR002942:IPR018079:IPR001912; KEGG: dge:Dgeo_1841 30S ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: C1XTK9 SSU ribosomal protein S4P; TIGRFAM: ribosomal protein S4; PFAM: Ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type YP_003686230.1 COGs: COG0100 Ribosomal protein S11; InterPro IPR001971:IPR019981:IPR018102; KEGG: ttj:TTHA1666 30S ribosomal protein S11; PFAM: ribosomal protein S11; SPTR: C1XTK8 SSU ribosomal protein S11P; TIGRFAM: 30S ribosomal protein S11; PFAM: Ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11 YP_003686231.1 COGs: COG0099 Ribosomal protein S13; InterPro IPR010979:IPR001892:IPR018269:IPR019980; KEGG: ttj:TTHA1667 30S ribosomal protein S13; PFAM: ribosomal protein S13; SPTR: C1XTK7 30S ribosomal protein; TIGRFAM: 30S ribosomal protein S13; PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13 YP_003686232.1 InterPro IPR000473; KEGG: pmf:P9303_23231 50S ribosomal protein L36; PFAM: ribosomal protein L36; SPTR: C1XTK6 50S ribosomal protein L36; TIGRFAM: ribosomal protein L36; PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type YP_003686233.1 COGs: COG0361 Translation initiation factor 1 (IF-1); InterPro IPR006196:IPR016027:IPR012340:IPR004368; KEGG: ttj:TTHA1669 translation initiation factor IF-1; PFAM: S1 IF1 family protein; SPTR: C1XTK5 Bacterial translation initiation factor 1 (BIF-1); TIGRFAM: translation initiation factor IF-1; PFAM: Translation initiation factor 1A / IF-1; TIGRFAM: translation initiation factor IF-1 YP_003686234.1 COGs: COG0024 Methionine aminopeptidase; InterPro IPR000994:IPR001714:IPR002467; KEGG: ttj:TTHA1670 methionine aminopeptidase; PFAM: peptidase M24; SPTR: C1XTK4 Methionine aminopeptidase; TIGRFAM: methionine aminopeptidase, type I; PFAM: Metallopeptidase family M24; TIGRFAM: methionine aminopeptidase, type I YP_003686235.1 COGs: COG0563 Adenylate kinase and related kinase; InterPro IPR000850:IPR006259; KEGG: ttj:TTHA1671 adenylate kinase; PFAM: adenylate kinase; SPTR: C1XTK3 Adenylate kinase; TIGRFAM: adenylate kinase; PFAM: Adenylate kinase; TIGRFAM: adenylate kinases YP_003686236.1 COGs: COG0201 Preprotein translocase subunit SecY; InterPro IPR002208; KEGG: tth:TTC1308 preprotein translocase subunit SecY; PFAM: SecY protein; SPTR: C1XTK2 Protein translocase subunit secY/sec61 alpha; TIGRFAM: preprotein translocase, SecY subunit; PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit; ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) YP_003686237.1 COGs: COG0200 Ribosomal protein L15; InterPro IPR001196:IPR005749; KEGG: ttj:TTHA1673 50S ribosomal protein L15; PFAM: ribosomal protein L15; SPTR: C1XTK1 50S ribosomal protein L15; TIGRFAM: ribosomal protein L15; PFAM: Ribosomal protein L18e/L15; TIGRFAM: ribosomal protein L15, bacterial/organelle YP_003686238.1 COGs: COG1841 Ribosomal protein L30/L7E; InterPro IPR000517:IPR016082:IPR005996; KEGG: ttj:TTHA1674 50S ribosomal protein L30; PFAM: ribosomal protein L30; SPTR: C1XTK0 LSU ribosomal protein L30P; TIGRFAM: ribosomal protein L30; PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle YP_003686239.1 COGs: COG0098 Ribosomal protein S5; InterProIPR005712:IPR020568:IPR014720:IPR013810:IPR 014721:IPR018192:IPR005324; KEGG: ttj:TTHA1675 30S ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5; SPTR: C1XTJ9 SSU ribosomal protein S5P; TIGRFAM: ribosomal protein S5; PFAM: Ribosomal protein S5, N-terminal domain; Ribosomal protein S5, C-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type YP_003686240.1 COGs: COG0256 Ribosomal protein L18; InterPro IPR005484:IPR004389; KEGG: ttj:TTHA1676 50S ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; SPTR: C1XTJ8 LSU ribosomal protein L18P; TIGRFAM: ribosomal protein L18; PFAM: Ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type YP_003686241.1 COGs: COG0097 Ribosomal protein L6P/L9E; InterPro IPR000702:IPR020040:IPR019906; KEGG: ttj:TTHA1677 50S ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain; SPTR: C1XTJ7 50S ribosomal protein L6; TIGRFAM: ribosomal protein L6; PFAM: Ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial type YP_003686242.1 COGs: COG0096 Ribosomal protein S8; InterPro IPR000630; KEGG: ttj:TTHA1678 30S ribosomal protein S8; PFAM: ribosomal protein S8; SPTR: C1XTJ6 SSU ribosomal protein S8P; PFAM: Ribosomal protein S8 YP_003686243.1 COGs: COG0199 Ribosomal protein S14; InterPro IPR018271:IPR001209; KEGG: ttj:TTHA1679 30S ribosomal protein S14; PFAM: ribosomal protein S14; SPTR: C1XTJ5 SSU ribosomal protein S14P; PFAM: Ribosomal protein S14p/S29e YP_003686244.1 COGs: COG0094 Ribosomal protein L5; InterPro IPR002132; KEGG: ttj:TTHA1680 50S ribosomal protein L5; PFAM: ribosomal protein L5; SPTR: C1XTJ4 50S ribosomal protein L5; PFAM: ribosomal L5P family C-terminus; Ribosomal protein L5 YP_003686245.1 COGs: COG0198 Ribosomal protein L24; InterPro IPR003256:IPR005824:IPR005825:IPR008991; KEGG: ttj:TTHA1681 50S ribosomal protein L24; PFAM: KOW domain protein; SMART: KOW domain protein; SPTR: C1XTJ3 LSU ribosomal protein L24P; TIGRFAM: ribosomal protein L24; PFAM: KOW motif; TIGRFAM: ribosomal protein L24, bacterial/organelle YP_003686246.1 COGs: COG0093 Ribosomal protein L14; InterPro IPR019972:IPR000218:IPR005745; KEGG: tth:TTC1318 50S ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; SPTR: C1XTJ2 50S ribosomal protein L14; TIGRFAM: ribosomal protein L14; PFAM: Ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle YP_003686247.1 COGs: COG0186 Ribosomal protein S17; InterPro IPR000266:IPR019984:IPR012340:IPR016027; KEGG: ttj:TTHA1683 30S ribosomal protein S17; PFAM: ribosomal protein S17; SPTR: C1XTJ1 SSU ribosomal protein S17P; TIGRFAM: 30S ribosomal protein S17; PFAM: Ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17 YP_003686248.1 InterPro IPR001854; KEGG: ttj:TTHA1684 50S ribosomal protein L29; PFAM: ribosomal protein L29; SPTR: C1XTJ0 LSU ribosomal protein L29P; TIGRFAM: ribosomal protein L29; PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29 YP_003686249.1 COGs: COG0197 Ribosomal protein L16/L10E; InterPro IPR000114:IPR016180:IPR020798; KEGG: tth:TTC1321 50S ribosomal protein L16; PFAM: Ribosomal protein L10e/L16; SPTR: C1XTP3 50S ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L16, bacterial/organelle YP_003686250.1 COGs: COG0092 Ribosomal protein S3; InterProIPR015946:IPR004044:IPR004088:IPR008282:IPR 005704:IPR009019:IPR018280:IPR001351:IPR004087; KEGG: ttj:TTHA1686 30S ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; Ribosomal protein S3 domain; KH type 2 domain protein; SMART: KH domain protein; SPTR: C1XTP2 SSU ribosomal protein S3P; TIGRFAM: ribosomal protein S3; PFAM: KH domain; Ribosomal protein S3, C-terminal domain; Ribosomal protein S3, N-terminal domain; TIGRFAM: ribosomal protein S3, bacterial type; ribosomal protein S3, eukaryotic/archaeal type YP_003686251.1 COGs: COG0091 Ribosomal protein L22; InterPro IPR001063:IPR005727:IPR018260; KEGG: ttj:TTHA1687 50S ribosomal protein L22; PFAM: ribosomal protein L22/L17; SPTR: C1XTP1 50S ribosomal protein L22; TIGRFAM: ribosomal protein L22; PFAM: Ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type YP_003686252.1 COGs: COG0185 Ribosomal protein S19; InterPro IPR005732:IPR002222; KEGG: ttj:TTHA1688 30S ribosomal protein S19; PFAM: ribosomal protein S19/S15; SPTR: C1XTP0 SSU ribosomal protein S19P; TIGRFAM: ribosomal protein S19; PFAM: Ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial/organelle YP_003686253.1 COGs: COG0090 Ribosomal protein L2; InterProIPR002171:IPR008991:IPR005880:IPR014722:IPR 012340:IPR016027; KEGG: ttj:TTHA1689 50S ribosomal protein L2; PFAM: ribosomal protein L2; SPTR: C1XTN9 LSU ribosomal protein L2P; TIGRFAM: ribosomal protein L2; PFAM: Ribosomal Proteins L2, RNA binding domain; Ribosomal Proteins L2, C-terminal domain; TIGRFAM: ribosomal protein L2, bacterial/organellar YP_003686254.1 COGs: COG0089 Ribosomal protein L23; InterPro IPR012677:IPR013025:IPR012678; KEGG: ttj:TTHA1690 50S ribosomal protein L23; PFAM: Ribosomal protein L25/L23; SPTR: C1XTN8 LSU ribosomal protein L23P; PFAM: Ribosomal protein L23 YP_003686255.1 COGs: COG0088 Ribosomal protein L4; InterPro IPR002136; KEGG: ttj:TTHA1691 50S ribosomal protein L4; PFAM: ribosomal protein L4/L1e; SPTR: C1XTN7 LSU ribosomal protein L4P; PFAM: Ribosomal protein L4/L1 family YP_003686256.1 COGs: COG0087 Ribosomal protein L3; InterPro IPR019926:IPR000597:IPR019927:IPR009000; KEGG: ttj:TTHA1692 50S ribosomal protein L3; PFAM: ribosomal protein L3; SPTR: C1XTN6 50S ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3; PFAM: Ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial YP_003686257.1 COGs: COG0051 Ribosomal protein S10; InterPro IPR018268:IPR001848:IPR005731; KEGG: ttj:TTHA1693 30S ribosomal protein S10; PFAM: ribosomal protein S10; SPTR: C1XTN5 SSU ribosomal protein S10P; TIGRFAM: ribosomal protein S10; PFAM: Ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle YP_003686258.1 COGs: COG0050 GTPase - translation elongation factors; InterProIPR009001:IPR005225:IPR000795:IPR009000:IPR 004160:IPR004541:IPR004161; KEGG: tth:TTC1734 elongation factor Tu; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; SPTR: C1XTN4 Elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: Elongation factor Tu C-terminal domain; Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU YP_003686259.1 COGs: COG0480 Translation elongation factors (GTPase); InterProIPR004540:IPR020568:IPR005517:IPR000640:IPR 009000:IPR000795:IPR014721:IPR009022:IPR005225:IPR004161; KEGG: ttj:TTHA1695 elongation factor G; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor G domain IV; elongation factor Tu domain 2 protein; SMART: elongation factor G domain IV; elongation factor G domain protein; SPTR: C1XTN3 Translation elongation factor 2 (EF-2/EF-G); TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain YP_003686260.1 COGs: COG0049 Ribosomal protein S7; InterPro IPR000235:IPR005717; KEGG: ttj:TTHA1696 30S ribosomal protein S7; PFAM: ribosomal protein S7; SPTR: C1XTN2 30S ribosomal protein S7; TIGRFAM: ribosomal protein S7; PFAM: Ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle YP_003686261.1 COGs: COG0048 Ribosomal protein S12; InterPro IPR006032:IPR005679:IPR016027:IPR012340; KEGG: ttj:TTHA1697 30S ribosomal protein S12; PFAM: ribosomal protein S12/S23; SPTR: C1XTN1 30S ribosomal protein S12; TIGRFAM: ribosomal protein S12; PFAM: Ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle YP_003686262.1 InterPro IPR002559; KEGG: tth:TT_P0158 hypothetical protein; PFAM: transposase IS4 family protein; SPTR: C1XPN1 Transposase family protein; PFAM: Transposase DDE domain YP_003686263.1 InterPro IPR002559:IPR012337; KEGG: cau:Caur_2446 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: C1XPT2 Transposase family protein; PFAM: Transposase DDE domain YP_003686264.1 KEGG: chl:Chy400_0712 hypothetical protein; SPTR: C1XVA4 Putative uncharacterized protein YP_003686265.1 KEGG: Os03g0168100; hypothetical protein; SPTR: C1XVA3 Putative uncharacterized protein YP_003686266.1 COGs: COG1999 Uncharacterized protein SCO1/SenC/PrrC involved in biogenesis of respiratory and photosynthetic systems; InterPro IPR017936:IPR012336:IPR003782:IPR012335; KEGG: tth:TTC1579 hypothetical protein; PFAM: electron transport protein SCO1/SenC; SPTR: C1XVA2 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems; PFAM: SCO1/SenC YP_003686267.1 KEGG: ttj:TTHA1945 hypothetical protein; SPTR: C1XVA1 Putative uncharacterized protein YP_003686268.1 COGs: COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain; InterPro IPR004518:IPR011551; KEGG: tth:TTC1583 nucleoside triphosphate pyrophosphohydrolase; PFAM: MazG nucleotide pyrophosphohydrolase; SPTR: C1XVA0 MazG family protein; TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein YP_003686269.1 InterPro IPR020084:IPR000086:IPR015797:IPR020476; KEGG: ttj:TTHA1947 MutT/NUDIX family protein; PFAM: NUDIX hydrolase; SPTR: C1XV99 ADP-ribose pyrophosphatase; PFAM: NUDIX domain; TIGRFAM: mutator mutT protein YP_003686270.1 COGs: COG0693 Putative intracellular protease/amidase; InterPro IPR006286:IPR002818; KEGG: tth:TTC1585 putative amidotransferase; PFAM: ThiJ/PfpI domain protein; SPTR: C1XV98 Putative intracellular protease/amidase; PFAM: DJ-1/PfpI family; TIGRFAM: intracellular protease, PfpI family YP_003686271.1 COGs: COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; InterPro IPR015424:IPR005814:IPR015421; KEGG: tro:trd_1080 aminotransferase, class III; PFAM: aminotransferase class-III; SPTR: C1XV97 Aminotransferase; PFAM: Aminotransferase class-III YP_003686272.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701:IPR005829:IPR016196; KEGG: rxy:Rxyl_1226 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: C1XV96 Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily YP_003686273.1 InterPro IPR019887:IPR011008; KEGG: xce:Xcel_3305 transcriptional regulator, AsnC family; PFAM: Transcription regulator, AsnC-type-like; SPTR: C1XV95 AsnC family protein; PFAM: AsnC family YP_003686274.1 KEGG: dge:Dgeo_0335 hypothetical protein; SPTR: C1XV94 Putative uncharacterized protein YP_003686275.1 InterPro IPR001387:IPR010982; KEGG: dge:Dgeo_0336 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: C1XV93 Helix-turn-helix protein; PFAM: Helix-turn-helix YP_003686276.1 InterPro IPR010499; KEGG: dia:Dtpsy_0189 transcription activator effector binding; SMART: transcription activator effector binding; SPTR: C1XV92 Uncharacterized conserved protein; PFAM: Bacterial transcription activator, effector binding domain YP_003686277.1 InterPro IPR010359; KEGG: ddr:Deide_03030 putative DNA repair regulator protein IrrE (PprI); PFAM: protein of unknown function DUF955; SPTR: C1XV91 Predicted Zn peptidase; PFAM: Domain of unknown function (DUF955) YP_003686278.1 COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR020084:IPR015797:IPR000086:IPR020476; KEGG: syn:sll1537 hypothetical protein; PFAM: NUDIX hydrolase; SPTR: C1XV90 ADP-ribose pyrophosphatase; PFAM: NUDIX domain YP_003686279.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198:IPR016040:IPR002347; KEGG: ttj:TTHA0461 dihydropteridine/dihydrofolate reductase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: C1XV89 Dihydropteridine reductase; PFAM: short chain dehydrogenase YP_003686280.1 COGs: COG0302 GTP cyclohydrolase I; InterPro IPR001474:IPR020602:IPR018234; KEGG: ttj:TTHA1878 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; PRIAM: GTP cyclohydrolase I; SPTR: C1XV88 GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I YP_003686281.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: mth:MTH374 dolichyl-phosphate mannose synthase related protein; PFAM: glycosyl transferase family 2; SPTR: C1XV87 Glycosyl transferase; PFAM: Glycosyl transferase family 2 YP_003686282.1 COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: mpd:MCP_1928 putative glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: C1XV86 Predicted glycosyltransferase; PFAM: Glycosyl transferase family 2 YP_003686283.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: pab:PAB0973 LPS biosynthesis RfbU related protein; PFAM: glycosyl transferase group 1; SPTR: C1XV85 Glycosyltransferase; PFAM: Glycosyl transferases group 1 YP_003686284.1 KEGG: Pc13g01430; SPTR: C1XV84 Putative uncharacterized protein YP_003686285.1 InterPro IPR008930; KEGG: sco:SCO0351 hypothetical protein; SPTR: C1XV83 Putative uncharacterized protein YP_003686286.1 COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: pfu:PF0465 putative glycosyl transferase; PFAM: glycosyl transferase family 2; SPTR: C1XV82 Glycosyl transferase; PFAM: Glycosyl transferase family 2 YP_003686287.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: tex:Teth514_2283 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: C1XV81 Glycosyltransferase; PFAM: Glycosyl transferases group 1 YP_003686288.1 InterPro IPR011051:IPR008894; KEGG: tel:tlr1343 hypothetical protein; PFAM: WxcM domain protein domain protein; SPTR: C1XV80 WxcM-like protein; PFAM: WxcM-like, C-terminal YP_003686289.1 COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR015422:IPR015424:IPR000653:IPR015421; KEGG: rfr:Rfer_0689 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; PRIAM: Glutamine--scyllo-inositol transaminase; SPTR: C1XV79 Predicted PLP-dependent enzyme possibly involved in cell wall biogenesis; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family YP_003686290.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: mba:Mbar_A0239 mannosyltransferase; PFAM: glycosyl transferase group 1; SPTR: C1XV78 Glycosyltransferase; PFAM: Glycosyl transferases group 1 YP_003686291.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: ter:Tery_4771 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: C1XV77 Glycosyl transferase; PFAM: Glycosyl transferase family 2 YP_003686292.1 KEGG: tth:TTC0645 hypothetical protein; SPTR: C1XV76 Putative uncharacterized protein; PFAM: Outer membrane efflux protein YP_003686293.1 COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); InterPro IPR005835:IPR013446; KEGG: rca:Rcas_3094 glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; SPTR: C1XV75 Glucose-1-phosphate cytidylyltransferase; TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate cytidylyltransferase YP_003686294.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR016040; KEGG: fre:Franean1_6561 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: C1XV74 Nucleoside-diphosphate-sugar epimerase; PFAM: NAD dependent epimerase/dehydratase family YP_003686295.1 InterPro IPR013691:IPR013217:IPR013630; KEGG: fre:Franean1_6562 C-methyltransferase; PFAM: C-methyltransferase; Methyltransferase type 12; Methyltransferase domain protein; SPTR: C1XV73 Methyltransferase family protein; PFAM: C-methyltransferase; Hypothetical methyltransferase YP_003686296.1 InterPro IPR013691; KEGG: rca:Rcas_3091 C-methyltransferase; PFAM: C-methyltransferase; SPTR: C1XV72 C-methyltransferase; PFAM: C-methyltransferase YP_003686297.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: ter:Tery_2950 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: C1XV71 Glycosyl transferase; PFAM: Glycosyl transferase family 2 YP_003686298.1 COGs: COG0438 Glycosyltransferase; InterPro IPR002797:IPR001296; KEGG: cag:Cagg_0880 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; polysaccharide biosynthesis protein; SPTR: C1XV70 Glycosyltransferase; PFAM: Glycosyl transferases group 1; Polysaccharide biosynthesis protein YP_003686299.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: ana:all2288 glucosyltransferase; PFAM: glycosyl transferase family 2; SPTR: C1XV69 Glycosyl transferase; PFAM: Glycosyl transferase family 2 YP_003686300.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: mno:Mnod_7037 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: C1XV68 Glycosyl transferase; PFAM: Glycosyl transferase family 2 YP_003686301.1 KEGG: lhk:LHK_01056 hypothetical protein; SPTR: C1XV67 Putative uncharacterized protein YP_003686302.1 KEGG: eba:ebA2079 hypothetical protein; SPTR: C1XV66 Putative uncharacterized protein YP_003686303.1 InterPro IPR009057; KEGG: cyp:PCC8801_0371 hypothetical protein; SPTR: C1XV65 Putative uncharacterized protein YP_003686304.1 COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR015424:IPR004839:IPR015421; KEGG: cag:Cagg_0385 glycine C-acetyltransferase; PFAM: aminotransferase class I and II; PRIAM: Glycine C-acetyltransferase; SPTR: C1XV63 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase YP_003686305.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR016040:IPR001509; KEGG: aoe:Clos_1940 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: C1XV62 L-threonine 3-dehydrogenase; PFAM: NAD dependent epimerase/dehydratase family YP_003686306.1 KEGG: bur:Bcep18194_B2712 hypothetical protein; SPTR: C1XV61 Putative uncharacterized protein YP_003686307.1 KEGG: scl:sce6374 carboxylesterase; SPTR: C1XV60 Putative uncharacterized protein YP_003686308.1 COGs: COG0274 Deoxyribose-phosphate aldolase; InterPro IPR011343:IPR013785:IPR002915; KEGG: rca:Rcas_2790 deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; PRIAM: Deoxyribose-phosphate aldolase; SPTR: C1XV59 Deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: DeoC/LacD family aldolase; TIGRFAM: deoxyribose-phosphate aldolase YP_003686309.1 COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR013022:IPR012307; KEGG: rba:RB5053 hypothetical protein; PFAM: Xylose isomerase domain protein TIM barrel; SPTR: C1XV58 Sugar phosphate isomerase/epimerase; PFAM: Xylose isomerase-like TIM barrel YP_003686310.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR016040:IPR000683:IPR004104; KEGG: rca:Rcas_2791 oxidoreductase domain-containing protein; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: C1XV57 Predicted dehydrogenase; PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold YP_003686311.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XV56 Integrase family protein; PFAM: Integrase core domain YP_003686312.1 COGs: COG4813 Trehalose utilization protein; InterPro IPR009381; KEGG: pjd:Pjdr2_4862 protein of unknown function DUF1037; PFAM: protein of unknown function DUF1037; SPTR: C1XV53 Trehalose utilization protein; PFAM: Trehalose utilisation YP_003686313.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR016040:IPR000683:IPR004104; KEGG: rrs:RoseRS_2681 oxidoreductase domain-containing protein; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: C1XV52 Predicted dehydrogenase; PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold YP_003686314.1 InterPro IPR003675; KEGG: dev:DhcVS_679 CAAX amino terminal protease; PFAM: Abortive infection protein; SPTR: C1XV51 CAAX amino terminal protease family; PFAM: CAAX amino terminal protease family YP_003686315.1 COGs: COG4743 membrane protein; InterPro IPR011674:IPR014495; KEGG: mma:MM_1185 hypothetical protein; PFAM: Protein of unknown function DUF1616; SPTR: C1XV50 Predicted membrane protein, COG4743; PFAM: Protein of unknown function (DUF1616) YP_003686316.1 InterPro IPR003848; KEGG: dau:Daud_0467 hypothetical protein; PFAM: protein of unknown function DUF218; SPTR: C1XV49 Uncharacterized conserved protein; PFAM: DUF218 domain YP_003686317.1 KEGG: mma:MM_1188 hypothetical protein; SPTR: C1XV48 Putative uncharacterized protein YP_003686318.1 KEGG: ttj:TTHA0771 hypothetical protein; SPTR: C1XV47 Putative uncharacterized protein YP_003686319.1 InterPro IPR002109; KEGG: dge:Dgeo_1508 glutaredoxin-like protein protein, YruB; PFAM: glutaredoxin; SPTR: C1XV46 Glutaredoxin YP_003686320.1 COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: ttj:TTHA0299 glucokinase; PFAM: ROK family protein; SPTR: C1XV45 Glucokinase; PFAM: ROK family; TIGRFAM: ROK family protein (putative glucokinase) YP_003686321.1 InterPro IPR011991; KEGG: rxy:Rxyl_0088 regulatory protein, MarR; SPTR: C1XV44 Predicted transcriptional regulator YP_003686322.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: gym:GYMC10_5092 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: C1XV43 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; PFAM: Response regulator receiver domain YP_003686323.1 COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209; KEGG: tth:TTC0372 serine protease; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: C1XV42 Subtilisin-like serine protease; PFAM: Subtilase family YP_003686324.1 InterPro IPR011990:IPR011717; KEGG: fra:Francci3_4285 adenylate/guanylate cyclase; PFAM: Tetratricopeptide TPR_4; SPTR: C1XV41 Putative uncharacterized protein YP_003686325.1 KEGG: tth:TTC0579 hypothetical protein; SPTR: C1XV40 Putative uncharacterized protein YP_003686326.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR011006; KEGG: ddr:Deide_2p00600 putative response regulator, CheY; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: C1XV39 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain; PFAM: Response regulator receiver domain YP_003686327.1 COGs: COG0642 Signal transduction histidine kinase; InterProIPR000700:IPR009082:IPR001610:IPR003594:IPR 003661:IPR005467:IPR013655:IPR004358; KEGG: rca:Rcas_3032 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; SPTR: C1XV38 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_003686328.1 COGs: COG0001 Glutamate-1-semialdehyde aminotransferase; InterPro IPR015424:IPR005814:IPR004639:IPR015421; KEGG: dra:DR_0555 glutamate-1-semialdehyde aminotransferase; PFAM: aminotransferase class-III; SPTR: C1XV37 Glutamate-1-semialdehyde 2,1-aminomutase; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: Aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase YP_003686329.1 COGs: COG0373 Glutamyl-tRNA reductase; InterPro IPR016040:IPR015895:IPR015896:IPR006151; KEGG: ele:Elen_2071 glutamyl-tRNA reductase; PFAM: Shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; PRIAM: Glutamyl-tRNA reductase; SPTR: C1XV36 Glutamyl-tRNA reductase; PFAM: Shikimate / quinate 5-dehydrogenase; Glutamyl-tRNAGlu reductase, N-terminal domain; TIGRFAM: glutamyl-tRNA reductase YP_003686330.1 COGs: COG0181 Porphobilinogen deaminase; InterPro IPR000860; KEGG: phe:Phep_3450 porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; PRIAM: Hydroxymethylbilane synthase; SPTR: C1XV35 Porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase, C-terminal domain; Porphobilinogen deaminase, dipyromethane cofactor binding domain; TIGRFAM: porphobilinogen deaminase YP_003686331.1 COGs: COG1587 Uroporphyrinogen-III synthase; InterPro IPR003754; KEGG: rmr:Rmar_1890 uroporphyrinogen III synthase HEM4; PFAM: Uroporphyrinogen III synthase HEM4; SPTR: C1XV34 Uroporphyrinogen-III synthase; PFAM: Uroporphyrinogen-III synthase HemD YP_003686332.1 COGs: COG0113 Delta-aminolevulinic acid dehydratase; InterPro IPR001731:IPR013785; KEGG: scl:sce0016 delta-aminolevulinic acid dehydratase; PFAM: delta-aminolevulinic acid dehydratase; PRIAM: Porphobilinogen synthase; SPTR: C1XV33 Delta-aminolevulinic acid dehydratase; PFAM: Delta-aminolevulinic acid dehydratase YP_003686333.1 COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterProIPR003661:IPR003594:IPR004358:IPR009082:IPR 005467; KEGG: gem:GM21_2941 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: C1XV32 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003686334.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001867:IPR001789:IPR011006:IPR016032; KEGG: phe:Phep_3446 response regulator receiver; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein; SPTR: C1XV31 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_003686335.1 COGs: COG0407 Uroporphyrinogen-III decarboxylase; InterPro IPR000257:IPR006361; KEGG: glo:Glov_3245 uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); PRIAM: Uroporphyrinogen decarboxylase; SPTR: C1XV30 Uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); TIGRFAM: uroporphyrinogen decarboxylase YP_003686336.1 COGs: COG3253 conserved hypothetical protein; InterPro IPR011008:IPR010644; KEGG: dra:DR_1481 hypothetical protein; PFAM: Chlorite dismutase; SPTR: C1XV29 Uncharacterized conserved protein; PFAM: Chlorite dismutase YP_003686337.1 COGs: COG0276 Protoheme ferro-lyase (ferrochelatase); InterPro IPR001015; KEGG: ttj:TTHA0600 ferrochelatase; PFAM: ferrochelatase; PRIAM: Ferrochelatase; SPTR: C1XV28 Ferrochelatase; TIGRFAM: ferrochelatase; PFAM: Ferrochelatase; TIGRFAM: ferrochelatase YP_003686338.1 COGs: COG1232 Protoporphyrinogen oxidase; InterPro IPR004572:IPR002937; KEGG: ttj:TTHA0599 protoporphyrinogen oxidase (HemG); PFAM: amine oxidase; PRIAM: Protoporphyrinogen oxidase; SPTR: C1XV27 Protoporphyrinogen oxidase; TIGRFAM: protoporphyrinogen oxidase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: protoporphyrinogen oxidase YP_003686339.1 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: ttj:TTHA0211 lipoprotein releasing system transmembrane protein; PFAM: protein of unknown function DUF214; SPTR: C1XV26 ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease YP_003686340.1 COGs: COG3584 conserved hypothetical protein; KEGG: ttj:TTHA0212 hypothetical protein; SPTR: C1XV25 Uncharacterized conserved protein YP_003686341.1 COGs: COG1461 kinase related to dihydroxyacetone kinase; InterPro IPR004007:IPR019986; KEGG: ttj:TTHA0214 kinase; PFAM: Dak phosphatase; SPTR: C1XV24 Predicted kinase, dihydroxyacetone kinase; TIGRFAM: DAK2 domain fusion protein YloV; PFAM: DAK2 domain; TIGRFAM: DAK2 domain fusion protein YloV YP_003686342.1 COGs: COG1302 conserved hypothetical protein; InterPro IPR005531; KEGG: ttj:TTHA0215 alkaline shock protein; PFAM: protein of unknown function DUF322; SPTR: C1XV23 Uncharacterized conserved protein; PFAM: Protein of unknown function (DUF322) YP_003686343.1 COGs: COG0343 Queuine/archaeosine tRNA-ribosyltransferase; InterPro IPR002616:IPR004803; KEGG: tth:TTC1676 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; PRIAM: tRNA-guanine transglycosylase; SPTR: C1XV22 Queuine tRNA-ribosyltransferase; TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; PFAM: Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; tRNA-guanine transglycosylase, queuosine-34-forming YP_003686344.1 COGs: COG0239 Integral membrane protein possibly involved in chromosome condensation; InterPro IPR003691; KEGG: tth:TTC1648 integral membrane protein; PFAM: Camphor resistance CrcB protein; SPTR: C1XV21 Protein crcB homolog; TIGRFAM: CrcB protein; PFAM: CrcB-like protein; TIGRFAM: crcB protein YP_003686345.1 COGs: COG1993 conserved hypothetical protein; InterPro IPR003793:IPR015867:IPR011322; KEGG: ttj:TTHA0334 hypothetical protein; PFAM: protein of unknown function DUF190; SPTR: C1XV20 Uncharacterized conserved protein; PFAM: Uncharacterized ACR, COG1993 YP_003686346.1 COGs: COG2041 Sulfite oxidase; InterPro IPR000572; KEGG: cyn:Cyan7425_4058 oxidoreductase molybdopterin binding; PFAM: oxidoreductase molybdopterin binding; SPTR: C1XV19 Sulfite oxidase-like oxidoreductase; PFAM: Oxidoreductase molybdopterin binding domain YP_003686347.1 KEGG: ttj:TTHA0332 hypothetical protein; SPTR: C1XV18 Putative uncharacterized protein YP_003686348.1 COGs: COG2720 Uncharacterized vancomycin resistance protein; InterPro IPR007391; KEGG: dge:Dgeo_1593 VanW; PFAM: VanW family protein; SPTR: C1XV17 Uncharacterized vancomycin resistance protein; PFAM: Putative peptidoglycan binding domain; VanW like protein YP_003686349.1 COGs: COG1738 conserved hypothetical protein; InterPro IPR003744; KEGG: ttr:Tter_1085 hypothetical protein; PFAM: protein of unknown function DUF165; SPTR: C1XV16 Conserved hypothetical integral membrane protein; TIGRFAM: conserved hypothetical protein; PFAM: Uncharacterized ACR, YhhQ family COG1738; TIGRFAM: conserved hypothetical integral membrane protein YP_003686350.1 COGs: COG0634 Hypoxanthine-guanine phosphoribosyltransferase; InterPro IPR000836:IPR005904; KEGG: ttj:TTHA0220 hypoxanthine-guanine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: Hypoxanthine phosphoribosyltransferase; SPTR: C1XV15 Hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase YP_003686351.1 COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterProIPR018496:IPR002942:IPR020103:IPR006145:IPR 000748; KEGG: ttj:TTHA0219 ribosomal large subunit pseudouridine synthase B; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; SPTR: C1XV14 Pseudouridine synthase; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase family YP_003686352.1 COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR018376:IPR001753; KEGG: sro:Sros_3993 enoyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase; SPTR: C1XV13 Enoyl-CoA hydratase/carnithine racemase; PFAM: Enoyl-CoA hydratase/isomerase family YP_003686353.1 COGs: COG0130 Pseudouridine synthase; InterPro IPR014780:IPR002501:IPR020103; KEGG: ttj:TTHA0217 tRNA pseudouridine 55 synthase; PFAM: pseudouridylate synthase TruB domain protein; SPTR: C1XV12 tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: tRNA Pseudouridine synthase II, C terminal; TruB family pseudouridylate synthase (N terminal domain); TIGRFAM: tRNA pseudouridine 55 synthase YP_003686354.1 COGs: COG1522 Transcriptional regulators; InterProIPR011991:IPR011008:IPR019885:IPR019887:IPR 019888:IPR000485:IPR000835; KEGG: tai:Taci_0270 transcriptional regulator, AsnC family; PFAM: Transcription regulator, AsnC-type-like; regulatory protein MarR; SMART: Transcription regulator, AsnC-type; SPTR: C1XV11 Transcriptional regulator; PFAM: MarR family; AsnC family YP_003686355.1 COGs: COG0686 Alanine dehydrogenase; InterProIPR016040:IPR008143:IPR008141:IPR007698:IPR 007886; KEGG: ttj:TTHA0216 alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; PRIAM: Alanine dehydrogenase; SPTR: C1XV10 L-alanine dehydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: alanine dehydrogenase YP_003686356.1 KEGG: gem:GM21_0868 hypothetical protein; SPTR: C1XV09 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3108) YP_003686357.1 KEGG: ddr:Deide_3p00233 putative hydrolase, precursor; SPTR: C1XV08 Putative uncharacterized protein; PFAM: Dienelactone hydrolase family YP_003686358.1 COGs: COG0628 permease; InterPro IPR002549; KEGG: tth:TTC1674 permease; PFAM: protein of unknown function UPF0118; SPTR: C1XV07 Predicted permease; PFAM: Domain of unknown function DUF20 YP_003686359.1 COGs: COG3246 conserved hypothetical protein; InterPro IPR008567; KEGG: mlo:mll1845 hypothetical protein; PFAM: protein of unknown function DUF849; SPTR: C1XV06 Uncharacterized conserved protein; PFAM: Prokaryotic protein of unknown function (DUF849) YP_003686360.1 InterPro IPR011055:IPR016047; KEGG: tth:TTC1965 membrane protein; PFAM: Peptidase M23; SPTR: C1XV05 Metalloendopeptidase-like membrane protein; PFAM: Peptidase family M23 YP_003686361.1 InterPro IPR001383; KEGG: ttj:TTHA0042 50S ribosomal protein L28; SPTR: C1XV04 LSU ribosomal protein L28P; TIGRFAM: ribosomal protein L28; PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28 YP_003686362.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XV03 Integrase family protein; PFAM: Integrase core domain YP_003686363.1 COGs: COG0597 Lipoprotein signal peptidase; InterPro IPR001872; KEGG: ttj:TTHA0043 lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; SPTR: C1XV02 Lipoprotein signal peptidase; TIGRFAM: lipoprotein signal peptidase; PFAM: Signal peptidase (SPase) II; TIGRFAM: lipoprotein signal peptidase YP_003686364.1 COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterProIPR015424:IPR004839:IPR001176:IPR004838:IPR 015421; KEGG: tth:TTC1960 aspartate aminotransferase; PFAM: aminotransferase class I and II; SPTR: C1XV01 Aspartate/tyrosine/aromatic aminotransferase; PFAM: Aminotransferase class I and II YP_003686365.1 KEGG: tth:TTC1407 S-layer protein; SPTR: C1XV00 Putative uncharacterized protein YP_003686366.1 COGs: COG4448 L-asparaginase II; InterPro IPR010349; KEGG: tth:TTC1938 L-asparaginase II; PFAM: L-asparaginase II; SPTR: C1XUZ9 L-asparaginase II; PFAM: L-asparaginase II YP_003686367.1 InterPro IPR005500; KEGG: ddr:Deide_18590 hypothetical protein; PFAM: protein of unknown function DUF309; SPTR: C1XUZ8 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF309) YP_003686368.1 COGs: COG3118 Thioredoxin domain-containing protein; InterProIPR017936:IPR017937:IPR012336:IPR005746:IPR 006662:IPR013766:IPR012335; KEGG: ttj:TTHA1747 thioredoxin; PFAM: Thioredoxin domain; SPTR: C1XUZ7 Thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin; TIGRFAM: thioredoxin YP_003686369.1 COGs: COG0416 Fatty acid/phospholipid biosynthesis enzyme; InterPro IPR003664:IPR012281; KEGG: ttj:TTHA1746 putative glycerol-3-phosphate acyltransferase PlsX; PFAM: fatty acid synthesis plsX protein; SPTR: C1XUZ6 Phosphate:acyl-(Acyl carrier protein) acyltransferase; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: Fatty acid synthesis protein; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX YP_003686370.1 COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685:IPR010920:IPR011066:IPR011014; KEGG: ttj:TTHA1715 hypothetical protein; PFAM: MscS Mechanosensitive ion channel; SPTR: C1XUZ5 Small-conductance mechanosensitive channel; PFAM: Mechanosensitive ion channel YP_003686371.1 InterPro IPR002559; KEGG: tth:TT_P0158 hypothetical protein; PFAM: transposase IS4 family protein; SPTR: C1XPN1 Transposase family protein; PFAM: Transposase DDE domain YP_003686372.1 COGs: COG2272 Carboxylesterase type B; InterPro IPR019826:IPR002018; KEGG: tth:TTC1787 carboxylesterase; PFAM: Carboxylesterase type B; SPTR: C1XUZ2 Carboxylesterase type B; PFAM: Carboxylesterase YP_003686373.1 COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR016166; KEGG: ddr:Deide_14041 putative glycolate oxidase subunit GlcE; SPTR: C1XUZ1 Putative uncharacterized protein YP_003686374.1 COGs: COG1597 Sphingosine kinase; InterPro IPR005218:IPR001206; KEGG: tth:TTC1957 protein BmrU; PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region; SPTR: C1XUZ0 Putative uncharacterized protein; PFAM: Diacylglycerol kinase catalytic domain; TIGRFAM: conserved protein of unknown function cotranscribed with Bmr (bmrU) YP_003686375.1 InterPro IPR000182:IPR016181; KEGG: tth:TTC1955 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: C1XUY9 Acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_003686376.1 COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: ttj:TTHA0052 putative deacetylase; PFAM: histone deacetylase superfamily; PRIAM: Histone deacetylase; SPTR: C1XUY8 Deacetylase, histone deacetylase/acetoin utilization protein; PFAM: Histone deacetylase domain YP_003686377.1 InterPro IPR000326:IPR016118; KEGG: ddr:Deide_08540 hypothetical protein; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; SPTR: C1XUY7 PAP2 superfamily protein; PFAM: PAP2 superfamily YP_003686378.1 InterPro IPR000182:IPR016181; KEGG: bgl:bglu_1g16940 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: C1XUY6 Acetyltransferase (GNAT) family protein; PFAM: Acetyltransferase (GNAT) family YP_003686379.1 COGs: COG1515 Deoxyinosine 3'endonuclease (endonuclease V); InterPro IPR007581; KEGG: ttj:TTHA1347 endonuclease V; PFAM: Endonuclease V; PRIAM: Deoxyribonuclease V; SPTR: C1XUY5 Endonuclease V; PFAM: Endonuclease V YP_003686380.1 KEGG: GF15295 gene product from transcript GF15295-RA; SPTR: C1XUY4 Putative uncharacterized protein YP_003686381.1 COGs: COG0714 MoxR-like ATPase; InterPro IPR011703:IPR003593:IPR016366; KEGG: pna:Pnap_3245 ATPase; PFAM: ATPase associated with various cellular activities AAA_3; SMART: AAA ATPase; SPTR: C1XUY3 MoxR-like ATPase; PFAM: ATPase family associated with various cellular activities (AAA) YP_003686382.1 COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: pol:Bpro_3892 hypothetical protein; PFAM: protein of unknown function DUF58; SPTR: C1XUY2 Uncharacterized conserved protein; PFAM: Protein of unknown function DUF58 YP_003686383.1 InterPro IPR002035:IPR011933; KEGG: azo:azo2860 hypothetical protein; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: C1XUY1 N-terminal double-transmembrane domain-containing protein; TIGRFAM: conserved hypothetical protein; PFAM: von Willebrand factor type A domain; TIGRFAM: N-terminal double-transmembrane domain YP_003686384.1 InterPro IPR002035; KEGG: pol:Bpro_3893 von Willebrand factor, type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: C1XUY0 Mg-chelatase subunit ChlD; PFAM: von Willebrand factor type A domain YP_003686385.1 KEGG: ttj:TTHA1786 hypothetical protein; SPTR: C1XUX9 Putative uncharacterized protein YP_003686386.1 KEGG: cts:Ctha_2003 hypothetical protein; SPTR: C1XUX8 Putative uncharacterized protein YP_003686387.1 KEGG: ttj:TTHA1787 hypothetical protein; SPTR: C1XUX7 Putative uncharacterized protein YP_003686388.1 COGs: COG2151 metal-sulfur cluster biosynthetic protein; InterPro IPR011883:IPR002744; KEGG: dge:Dgeo_1915 phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; SPTR: C1XUX6 Phenylacetate-CoA oxygenase, PaaJ subunit; TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: Domain of unknown function DUF59; TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit YP_003686389.1 COGs: COG3396 conserved hypothetical protein; InterPro IPR007814:IPR012347:IPR011882:IPR009078; KEGG: ttj:TTHA0970 phenylacetic acid degradation protein PaaC; PFAM: phenylacetic acid catabolic family protein; SPTR: C1XUX5 Phenylacetate-CoA oxygenase, PaaI subunit; TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: Phenylacetic acid catabolic protein; TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit YP_003686390.1 COGs: COG3460 Uncharacterized protein of phenylacetate metabolism; InterPro IPR009359; KEGG: dge:Dgeo_1917 phenylacetic acid degradation B; PFAM: phenylacetic acid degradation B; SPTR: C1XUX4 Uncharacterized enzyme of phenylacetate metabolism; PFAM: Phenylacetic acid degradation B; TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit YP_003686391.1 COGs: COG3396 conserved hypothetical protein; InterPro IPR007814:IPR012347:IPR011881:IPR009078; KEGG: ttj:TTHA0972 phenylacetate-CoA oxygenase subunit PaaA; PFAM: phenylacetic acid catabolic family protein; SPTR: C1XUX3 Phenylacetate-CoA oxygenase, PaaG subunit; TIGRFAM: phenylacetate-CoA oxygenase, PaaG subunit; PFAM: Phenylacetic acid catabolic protein; TIGRFAM: phenylacetate-CoA oxygenase, PaaG subunit YP_003686392.1 InterPro IPR000182:IPR016181; KEGG: dat:HRM2_03420 putative acetyltransferase family protein (GNAT-family protein); PFAM: GCN5-related N-acetyltransferase; SPTR: C1XUX2 Acetyltransferase (GNAT) family protein; PFAM: Acetyltransferase (GNAT) family YP_003686393.1 COGs: COG2129 phosphoesterase related to the Icc protein; InterPro IPR004843; KEGG: cps:CPS_1287 Ser/Thr protein phosphatase family protein; PFAM: metallophosphoesterase; SPTR: C1XUX1 Predicted phosphoesterase, ICC; PFAM: Calcineurin-like phosphoesterase YP_003686394.1 InterPro IPR002514; KEGG: tth:TT_P0186 hypothetical protein; PFAM: transposase IS3/IS911 family protein; SPTR: C1XWP6 Transposase; PFAM: Transposase; Integrase core domain YP_003686395.1 COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018483:IPR018485:IPR018484; KEGG: dge:Dgeo_2863 carbohydrate kinase, FGGY; PFAM: Carbohydrate kinase, FGGY-like; SPTR: C1XUW7 Pentulose/hexulose kinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain YP_003686396.1 COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018483:IPR006000:IPR018485:IPR018484; KEGG: rxy:Rxyl_0402 xylulokinase; PFAM: Carbohydrate kinase, FGGY-like; SPTR: C1XUW6 Xylulokinase; TIGRFAM: xylulokinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: D-xylulose kinase YP_003686397.1 COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034:IPR014036; KEGG: sth:STH793 DeoR family transcriptional regulator; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; SPTR: C1XUW5 Transcriptional regulator of sugar metabolism; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain YP_003686398.1 COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013154:IPR013149:IPR011032:IPR016040; KEGG: scl:sce5374 hypothetical protein; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; SPTR: C1XUW4 Theronine dehydrogenase-like Zn-dependent dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase YP_003686399.1 COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: dsh:Dshi_0547 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: C1XUW3 Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: Bacterial extracellular solute-binding protein YP_003686400.1 COGs: COG0794 sugar phosphate isomerase involved in capsule formation; InterPro IPR001347; KEGG: rru:Rru_A1367 hexulose-6-phosphate isomerase; PFAM: sugar isomerase (SIS); SPTR: C1XUW2 Hexulose-6-phosphate isomerase; PFAM: SIS domain; TIGRFAM: 6-phospho 3-hexuloisomerase YP_003686401.1 COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: dsh:Dshi_0548 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XUW1 Carbohydrate ABC transporter membrane protein 1, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component YP_003686402.1 COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: dsh:Dshi_0549 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XUW0 Carbohydrate ABC transporter membrane protein 2, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component YP_003686403.1 COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR013022:IPR012307; KEGG: fre:Franean1_2834 xylose isomerase domain-containing protein; PFAM: Xylose isomerase domain protein TIM barrel; SPTR: C1XUV9 Sugar phosphate isomerase/epimerase; PFAM: Xylose isomerase-like TIM barrel YP_003686404.1 KEGG: dae:Dtox_3747 ABC transporter related; SPTR: C1XUV8 Putative uncharacterized protein YP_003686405.1 COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: sco:SCP1.259 putative transposon transposase; PFAM: transposase mutator type; SPTR: C1XP69 Transposase; PFAM: Transposase, Mutator family YP_003686406.1 COGs: COG3968 Uncharacterized protein related to glutamine synthetase; InterPro IPR014746:IPR008146; KEGG: dge:Dgeo_1203 glutamine synthetase, catalytic region; PFAM: glutamine synthetase catalytic region; SPTR: C1XUV6 L-glutamine synthetase; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase type III N terminal YP_003686407.1 COGs: COG2820 Uridine phosphorylase; InterPro IPR000845:IPR018016; KEGG: rca:Rcas_2333 purine phosphorylase family 1; PFAM: purine or other phosphorylase family 1; SPTR: C1XUV5 Uridine phosphorylase; PFAM: Phosphorylase superfamily; TIGRFAM: uridine phosphorylase YP_003686408.1 COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018483:IPR006000:IPR018485:IPR018484; KEGG: rxy:Rxyl_2898 xylulokinase; PFAM: Carbohydrate kinase, FGGY-like; SPTR: C1XUV4 D-xylulose kinase; TIGRFAM: xylulokinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: D-xylulose kinase YP_003686409.1 COGs: COG2041 Sulfite oxidase; InterPro IPR000572:IPR014756:IPR005066; KEGG: ddr:Deide_13361 putative oxidoreductase, molybdopterin binding protein, precursor; putative membrane protein; PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; SPTR: C1XUV3 Sulfite oxidase-like oxidoreductase; PFAM: Mo-co oxidoreductase dimerisation domain; Oxidoreductase molybdopterin binding domain YP_003686410.1 InterPro IPR006311; KEGG: ttj:TTHA1012 hypothetical protein; SPTR: C1XUV2 Outer membrane lipoprotein-sorting protein YP_003686411.1 KEGG: ttj:TTHA1011 hypothetical protein; SPTR: C1XUV1 Putative uncharacterized protein YP_003686412.1 COGs: COG0842 ABC-type multidrug transport system permease component; InterPro IPR000412:IPR013525; KEGG: swo:Swol_2449 ABC-type multidrug transport system permease component; PFAM: ABC-2 type transporter; SPTR: C1XUV0 ABC-type multidrug transport system, permease component; PFAM: ABC-2 type transporter YP_003686413.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: smt:Smal_1355 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XUU9 ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter YP_003686414.1 InterPro IPR001647:IPR012287:IPR009057; KEGG: npu:Npun_F3704 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: C1XUU8 Transcriptional regulator, COG1309; PFAM: Bacterial regulatory proteins, tetR family YP_003686415.1 COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: chl:Chy400_0687 nitroreductase; PFAM: nitroreductase; SPTR: C1XUU4 Nitroreductase; PFAM: Nitroreductase family YP_003686416.1 COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: ttj:TTHA1634 peptide ABC transporter, peptide-binding protein; PFAM: extracellular solute-binding protein family 5; SPTR: C1XUU3 ABC-type dipeptide transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_003686417.1 KEGG: fps:FP1462 hypothetical protein; SPTR: C1XUU2 Putative uncharacterized protein YP_003686418.1 KEGG: ttj:TTHA0749 hypothetical protein; SPTR: C1XUU1 Putative uncharacterized protein YP_003686419.1 COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003593:IPR003439:IPR017871; KEGG: ttj:TTHA0748 iron ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XN72 ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component; PFAM: ABC transporter YP_003686420.1 COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: tth:TTC0391 iron(III) dicitrate transport system permease protein FecD; PFAM: transport system permease protein; SPTR: C1XUT9 ABC-type Fe3+-siderophore transport system, permease component; PFAM: FecCD transport family YP_003686421.1 COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: ttj:TTHA0746 iron ABC transporter, substrate-binding protein; PFAM: periplasmic binding protein; SPTR: C1XUT8 ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein YP_003686422.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XUT7 Integrase family protein; PFAM: Integrase core domain YP_003686423.1 COGs: COG1690 conserved hypothetical protein; InterPro IPR001233; KEGG: rca:Rcas_0873 hypothetical protein; PFAM: protein of unknown function UPF0027; SPTR: C1XUT6 Uncharacterized conserved protein; PFAM: Uncharacterized protein family UPF0027 YP_003686424.1 KEGG: sus:Acid_6005 alpha/beta hydrolase fold; SPTR: C1XUT5 Putative uncharacterized protein YP_003686425.1 InterPro IPR017909:IPR006311:IPR006076; KEGG: aba:Acid345_1633 hypothetical protein; PFAM: FAD dependent oxidoreductase; SPTR: C1XUT4 FAD dependent oxidoreductase; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003686426.1 COGs: COG0802 ATPase or kinase; InterPro IPR003442; KEGG: ttj:TTHA0163 hypothetical protein; PFAM: protein of unknown function UPF0079; SPTR: C1XUT3 Conserved hypothetical nucleotide-binding protein; PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: conserved hypothetical nucleotide-binding protein YP_003686427.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR000383; KEGG: bbe:BBR47_49460 hypothetical protein; PFAM: peptidase S15; SPTR: C1XUT2 X-Pro dipeptidyl-peptidase (S15 family)/dienelactone hydrolase family protein; PFAM: Prolyl oligopeptidase family YP_003686428.1 InterPro IPR011701:IPR016196; KEGG: rxy:Rxyl_2098 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: C1XUT1 Fucose permease; PFAM: Major Facilitator Superfamily YP_003686429.1 COGs: COG3191 L-aminopeptidase/D-esterase; InterPro IPR005321:IPR016117; KEGG: dge:Dgeo_2133 peptidase S58, DmpA; PFAM: peptidase S58 DmpA; SPTR: C1XUT0 L-aminopeptidase/D-esterase; PFAM: Peptidase family S58 YP_003686430.1 COGs: COG2389 Uncharacterized metal-binding protein; InterPro IPR019250; KEGG: dra:DR_1889 hypothetical protein; PFAM: Protein of unknown function DUF2227, metal-binding; SPTR: C1XUS9 Uncharacterized metal-binding protein; PFAM: Uncharacterized metal-binding protein (DUF2227) YP_003686431.1 COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR001959:IPR010095; KEGG: dge:Dgeo_2738 putative transposase, IS891/IS1136/IS1341; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; SPTR: C1XUS8 Transposase, IS605 OrfB family, central region; TIGRFAM: transposase, IS605 OrfB family; PFAM: Helix-turn-helix domain; Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region YP_003686432.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XUS5 Integrase family protein; PFAM: Integrase core domain YP_003686433.1 InterPro IPR001647:IPR009057:IPR011075:IPR012287; KEGG: ttj:TTHA0167 TetR/AcrR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: C1XUS4 Transcriptional regulator, COG1309; PFAM: Bacterial regulatory proteins, tetR family YP_003686434.1 COGs: COG1329 Transcriptional regulators similar to M. xanthus CarD; InterPro IPR003711; KEGG: tth:TTC1818 transcriptional regulator; PFAM: transcription factor CarD; SPTR: C1XUS3 Transcriptional regulator, CarD family; PFAM: CarD-like/TRCF domain YP_003686435.1 COGs: COG0305 Replicative DNA helicase; InterProIPR007693:IPR016136:IPR007694:IPR003593:IPR 007692; KEGG: ttj:TTHA1470 replicative DNA helicase DnaB; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; SPTR: C1XUS2 Primary replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase YP_003686436.1 InterProIPR013105:IPR019734:IPR013026:IPR001440:IPR 011990:IPR011717; KEGG: ddr:Deide_23110 putative tetratricopeptide repeat (TPR) domain protein, precursor; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; SPTR: C1XZG9 Tetratricopeptide repeat protein; PFAM: Tetratricopeptide repeat YP_003686437.1 COGs: COG0016 Phenylalanyl-tRNA synthetase alpha subunit; InterProIPR004188:IPR002319:IPR010978:IPR006195:IPR 004529; KEGG: tth:TTC1594 phenylalanyl-tRNA synthetase subunit alpha; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; PRIAM: Phenylalanine--tRNA ligase; SPTR: C1XZG8 Phenylalanyl-tRNA synthetase, alpha subunit; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: tRNA synthetases class II core domain (F); Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit YP_003686438.1 COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; InterProIPR005121:IPR005146:IPR002547:IPR004532:IPR 005147:IPR020825:IPR012340:IPR016027:IPR009061; KEGG: tth:TTC1595 phenylalanyl-tRNA synthetase subunit beta; PFAM: B3/4 domain protein; tRNA synthetase B5; t-RNA-binding domain protein; ferredoxin-fold anticodon-binding; PRIAM: Phenylalanine--tRNA ligase; SMART: B3/4 domain protein; ferredoxin-fold anticodon-binding; tRNA synthetase B5; SPTR: C1XZG7 Phenylalanyl-tRNA synthetase beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase B5 domain; Ferredoxin-fold anticodon binding domain; B3/4 domain; Putative tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial YP_003686439.1 KEGG: tth:TTC1596 hypothetical protein; SPTR: C1XZG6 Putative uncharacterized protein YP_003686440.1 COGs: COG0225 Peptide methionine sulfoxide reductase; InterPro IPR002569; KEGG: rxy:Rxyl_2864 methionine sulfoxide reductase A; PFAM: Methionine sulfoxide reductase A; PRIAM: Peptide-methionine (S)-S-oxide reductase; SPTR: C1XZG5 Methionine-S-sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Peptide methionine sulfoxide reductase; TIGRFAM: methionine-S-sulfoxide reductase YP_003686441.1 COGs: COG0205 6-phosphofructokinase; InterPro IPR000023:IPR012003:IPR012828:IPR015912; KEGG: ttj:TTHA1962 6-phosphofructokinase; PFAM: phosphofructokinase; PRIAM: 6-phosphofructokinase; SPTR: C1XZG4 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: Phosphofructokinase; TIGRFAM: 6-phosphofructokinase YP_003686442.1 COGs: COG0313 methyltransferase; InterPro IPR014777:IPR000878:IPR008189; KEGG: ttj:TTHA1963 tetrapyrrole methylase family protein; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; SPTR: C1XZG3 Putative uncharacterized protein; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: conserved hypothetical protein TIGR00096 YP_003686443.1 KEGG: gsu:GSU3134 hypothetical protein; SPTR: C1XZG2 Putative uncharacterized protein YP_003686444.1 InterPro IPR001584:IPR012337:IPR009057; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XWR3 Integrase family protein; PFAM: Integrase core domain YP_003686445.1 COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: sco:SCP1.259 putative transposon transposase; PFAM: transposase mutator type; SPTR: C1XP69 Transposase; PFAM: Transposase, Mutator family YP_003686446.1 InterPro IPR000086:IPR020476:IPR015797; KEGG: tth:TTC1859 bis(5'-nucleosyl)-tetraphosphatase (asymmetrical); PFAM: NUDIX hydrolase; SPTR: C1XYH3 Zn-finger containing NTP pyrophosphohydrolase; PFAM: NUDIX domain YP_003686447.1 KEGG: dge:Dgeo_1464 hypothetical protein; SPTR: C1XYH2 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2847) YP_003686448.1 COGs: COG1703 Putative periplasmic protein kinase ArgK and related GTPase of G3E family; InterPro IPR005129; KEGG: ttj:TTHA0136 LAO/AO transport system kinase; PFAM: ArgK protein; SPTR: C1XYH1 LAO/AO transport system ATPase; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; TIGRFAM: LAO/AO transport system ATPase YP_003686449.1 COGs: COG0251 Putative translation initiation inhibitor yjgF family; InterPro IPR006175:IPR013813:IPR006056; KEGG: ttj:TTHA0137 protein translation intiation inhibitor; PFAM: Endoribonuclease L-PSP; SPTR: C1XG09 Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP, putative YP_003686450.1 KEGG: shi:Shel_11230 hypothetical protein; SPTR: C1XYG8 Putative uncharacterized protein YP_003686451.1 COGs: COG0631 Serine/threonine protein phosphatase; InterPro IPR010822:IPR001932:IPR014045; KEGG: ttj:TTHA0187 putative protein phosphatase; PFAM: Protein phosphatase 2C-like; Stage II sporulation E family protein; PRIAM: Phosphoprotein phosphatase; SMART: protein phosphatase 2C domain protein; SPTR: C1XYG7 Serine/threonine protein phosphatase; PFAM: Protein phosphatase 2C YP_003686452.1 COGs: COG2609 Pyruvate dehydrogenase complex dehydrogenase (E1) component; InterPro IPR009014:IPR015941:IPR004660; KEGG: ttj:TTHA0185 pyruvate dehydrogenase subunit E1; SPTR: C1XYG6 Pyruvate dehydrogenase E1 component, homodimeric type; TIGRFAM: 2-oxo-acid dehydrogenase E1 subunit, homodimeric type; PFAM: Transketolase, thiamine diphosphate binding domain; TIGRFAM: pyruvate dehydrogenase E1 component, homodimeric type YP_003686453.1 COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterProIPR004167:IPR001078:IPR000089:IPR003016:IPR 011053; KEGG: ttj:TTHA0184 branched-chain alpha-keto acid dehydrogenase subunit E2; PFAM: catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; biotin/lipoyl attachment domain-containing protein; SPTR: C1XYG5 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form YP_003686454.1 COGs: COG1166 Arginine decarboxylase (spermidine biosynthesis); InterPro IPR000183:IPR002985:IPR009006; KEGG: ttj:TTHA1640 arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: C1XYG4 Arginine decarboxylase; TIGRFAM: arginine decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: arginine decarboxylase, biosynthetic YP_003686455.1 COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR000160; KEGG: tth:TTC1278 diguanylate cyclase/phosphodiesterase; PFAM: GGDEF domain containing protein; PRIAM: Diguanylate kinase; SMART: GGDEF domain containing protein; SPTR: C1XYG3 Diguanylate cyclase (GGDEF) domain-containing protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_003686456.1 COGs: COG0192 S-adenosylmethionine synthetase; InterPro IPR002133; KEGG: ttj:TTHA1642 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; PRIAM: Methionine adenosyltransferase; SPTR: C1XYG2 S-adenosylmethionine synthetase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal domain; TIGRFAM: S-adenosylmethionine synthetase YP_003686457.1 COGs: COG2206 HD-GYP domain; InterPro IPR003018:IPR006674:IPR006675:IPR003607; KEGG: ddr:Deide_2p00350 putative metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; GAF domain protein; SMART: metal-dependent phosphohydrolase HD region; GAF domain protein; SPTR: C1XYG1 Uncharacterized domain HDIG-containing protein; TIGRFAM: metal dependent phophohydrolase; PFAM: HD domain; GAF domain; TIGRFAM: uncharacterized domain HDIG YP_003686458.1 KEGG: tth:TTC1218 transcriptional regulator; SPTR: C1XYG0 Transcriptional regulator YP_003686459.1 KEGG: tth:TTC1554 hypothetical protein; SPTR: C1XYF9 Putative uncharacterized protein YP_003686460.1 KEGG: pab:PAB0975 hypothetical protein; SPTR: C1XYF8 Putative uncharacterized protein YP_003686461.1 SPTR: C1XYF7 Putative uncharacterized protein YP_003686462.1 COGs: COG1802 Transcriptional regulators; InterPro IPR011991:IPR000524:IPR000485:IPR011711; KEGG: ttj:TTHA1580 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C1XYF6 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain YP_003686463.1 COGs: COG0506 Proline dehydrogenase; InterPro IPR008219:IPR002872; KEGG: tth:TTC1214 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Proline dehydrogenase; SPTR: C1XYF5 L-proline dehydrogenase; PFAM: Proline dehydrogenase YP_003686464.1 COGs: COG3603 conserved hypothetical protein; InterPro IPR016540; KEGG: atc:AGR_C_1340 hypothetical protein; SPTR: C1XYF4 Uncharacterized conserved protein YP_003686465.1 COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterProIPR005932:IPR016161:IPR015590:IPR016160:IPR 016162; KEGG: tth:TTC1213 1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: C1XYF3 Delta-1-pyrroline-5-carboxylate dehydrogenase; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde dehydrogenase family; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative YP_003686466.1 KEGG: ttj:TTHA1954 hypothetical protein; SPTR: C1XYF2 Putative uncharacterized protein; PFAM: HD domain YP_003686467.1 InterPro IPR002559; KEGG: ddr:Deide_3p01971 putative transposase; PFAM: transposase IS4 family protein; SPTR: C1XT23 Transposase family protein YP_003686468.1 KEGG: sus:Acid_6260 hypothetical protein; SPTR: C1XYE4 Putative uncharacterized protein YP_003686469.1 InterPro IPR003343; KEGG: fre:Franean1_5103 UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Ig domain protein group 2 domain protein; SPTR: C1XYE3 Ig-like domain-containing protein; PFAM: Bacterial Ig-like domain (group 2) YP_003686470.1 KEGG: cai:Caci_6129 hypothetical protein; SPTR: C1XYE2 Putative uncharacterized protein YP_003686471.1 COGs: COG4280 membrane protein; KEGG: cai:Caci_6128 hypothetical protein; SPTR: C1XYE1 Predicted membrane protein, COG4280 YP_003686472.1 KEGG: hypothetical protein; SPTR: C1XYD9 Putative uncharacterized protein YP_003686473.1 InterPro IPR012861; KEGG: sus:Acid_5631 hypothetical protein; PFAM: protein of unknown function DUF1634; SPTR: C1XYD7 Predicted membrane protein, COG4272; PFAM: Protein of unknown function (DUF1634) YP_003686474.1 COGs: COG0730 permease; InterPro IPR002781; KEGG: cpc:Cpar_1018 protein of unknown function DUF81; PFAM: protein of unknown function DUF81; SPTR: C1XYD6 Predicted permease; PFAM: Sulfite exporter TauE/SafE YP_003686475.1 COGs: COG0364 Glucose-6-phosphate 1-dehydrogenase; InterPro IPR016040:IPR001282:IPR019796; KEGG: rmr:Rmar_2298 glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; PRIAM: Glucose-6-phosphate dehydrogenase; SPTR: C1XYD5 Glucose-6-phosphate 1-dehydrogenase; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase, NAD binding domain; Glucose-6-phosphate dehydrogenase, C-terminal domain; TIGRFAM: glucose-6-phosphate 1-dehydrogenase YP_003686476.1 COGs: COG3387 Glucoamylase and related glycosyl hydrolase; InterProIPR015220:IPR008928:IPR012341:IPR000165:IPR 011013:IPR011613:IPR014718; KEGG: dge:Dgeo_0725 glucan 1,4-alpha-glucosidase; PFAM: Glucodextranase N; glycoside hydrolase 15-related; PRIAM: Glucan 1,4-alpha-glucosidase; SPTR: C1XYD4 Glycosyl hydrolase, glucoamylase; PFAM: Glycosyl hydrolases family 15; Glucodextranase, domain N; TIGRFAM: glucan 1,4-alpha-glucosidase YP_003686477.1 COGs: COG0723 Rieske Fe-S protein; InterPro IPR017941:IPR005805; KEGG: ttj:TTHA1931 quinol-cytochrome c reductase, Rieske iron-sulfur subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: C1XYD3 Rieske Fe-S protein; PFAM: Rieske [2Fe-2S] domain YP_003686478.1 COGs: COG0642 Signal transduction histidine kinase; InterProIPR003594:IPR004358:IPR009082:IPR003660:IPR 003661:IPR005467; KEGG: dge:Dgeo_2750 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: C1XYD2 Sensor protein; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003686479.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001867:IPR001789:IPR011991:IPR011006; KEGG: dge:Dgeo_2749 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein; SPTR: C1XYD1 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_003686480.1 COGs: COG0642 Signal transduction histidine kinase; InterProIPR009082:IPR003660:IPR003594:IPR003661:IPR 005467:IPR004358; KEGG: fal:FRAAL3820 putative transmembrane sensory transduction histidine kinase for metal resistance; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: C1XYD0 Sensor protein; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003686481.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867:IPR011006; KEGG: azc:AZC_1953 response regulator receiver; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein; SPTR: C1XYC9 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_003686482.1 InterPro IPR016118:IPR000326; KEGG: dge:Dgeo_2748 phosphoesterase, PA-phosphatase-related protein; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; SPTR: C1XYC8 Membrane-associated phospholipid phosphatase; PFAM: PAP2 superfamily YP_003686483.1 COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR011330:IPR002509; KEGG: dge:Dgeo_0046 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: C1XYC7 Predicted xylanase/chitin deacetylase; PFAM: Polysaccharide deacetylase YP_003686484.1 COGs: COG3391 conserved hypothetical protein; InterPro IPR015943; KEGG: sus:Acid_5269 YVTN beta-propeller repeat-containing protein; SPTR: C1XYC6 Putative uncharacterized protein; PFAM: 3-carboxy-cis,cis-muconate lactonizing enzyme; TIGRFAM: 40-residue YVTN family beta-propeller repeat YP_003686485.1 KEGG: dge:Dgeo_2786 peptidase; SPTR: C1XYC4 Putative uncharacterized protein; PFAM: Peptidase propeptide and YPEB domain YP_003686486.1 KEGG: cte:CT1486 heat-inducible transcription repressor HrcA; SPTR: C1XYC3 Putative uncharacterized protein YP_003686487.1 SPTR: C1XYC2 Putative uncharacterized protein YP_003686488.1 COGs: COG2873 O-acetylhomoserine sulfhydrylase; InterPro IPR015421:IPR015422:IPR000277:IPR015424; KEGG: tth:TTC0792 QAH/OAS sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; PRIAM: O-acetylhomoserine aminocarboxypropyltransferase; SPTR: C1XYC1 O-acetylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism PLP-dependent enzyme YP_003686489.1 KEGG: rca:Rcas_2085 hypothetical protein; SPTR: C1XVF3 Putative uncharacterized protein YP_003686490.1 COGs: COG1785 Alkaline phosphatase; InterPro IPR017850:IPR001952:IPR017849; KEGG: dge:Dgeo_3000 alkaline phosphatase; PFAM: Alkaline phosphatase; SMART: Alkaline phosphatase; SPTR: C1XYB9 Alkaline phosphatase; PFAM: Alkaline phosphatase YP_003686491.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: dra:DR_B0049 ABC transporter, ATP-binding protein, putative; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XVF0 ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter YP_003686492.1 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: dra:DR_B0050 hypothetical protein; PFAM: protein of unknown function DUF214; SPTR: C1XYB6 ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease YP_003686493.1 SPTR: C1XYB5 Putative uncharacterized protein YP_003686494.1 KEGG: sml:Smlt1463 putative GGDEF domain signalling protein; SPTR: C1XYB4 Diguanylate cyclase (GGDEF) domain-containing protein YP_003686495.1 InterPro IPR002559; KEGG: ddr:Deide_3p01971 putative transposase; PFAM: transposase IS4 family protein; SPTR: C1XVE7 Transposase family protein YP_003686496.1 COGs: COG0580 Glycerol uptake facilitator and related permease (Major Intrinsic Protein Family); InterPro IPR000425:IPR012269; KEGG: pcu:pc0796 putative tonoplast intrinsic protein (aquaporin); PFAM: major intrinsic protein; SPTR: C1XVE6 MIP family channel protein; TIGRFAM: MIP family channel protein; PFAM: Major intrinsic protein; TIGRFAM: MIP family channel proteins YP_003686497.1 COGs: COG1573 Uracil-DNA glycosylase; InterPro IPR005122; KEGG: ttj:TTHA1149 uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; SPTR: C1XVE5 Uracil-DNA glycosylase; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase, family 4 YP_003686498.1 SPTR: C1XVE4 Putative uncharacterized protein; TIGRFAM: Gram-positive signal peptide, YSIRK family YP_003686499.1 COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR011763:IPR011762:IPR000022; KEGG: ttj:TTHA1148 propionyl-CoA carboxylase, alpha subunit; PFAM: carboxyl transferase; SPTR: C1XVE3 Acetyl-CoA carboxylase, carboxyltransferase component (Subunits alpha and beta); PFAM: Carboxyl transferase domain YP_003686500.1 InterPro IPR012337:IPR009057:IPR001584; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XVE2 Integrase family protein; PFAM: Integrase core domain YP_003686501.1 COGs: COG0220 S-adenosylmethionine-dependent methyltransferase; InterPro IPR003358; KEGG: ttj:TTHA1619 methyltransferase; PFAM: putative methyltransferase; PRIAM: tRNA (guanine-N(7)-)-methyltransferase; SPTR: C1XVE1 tRNA (Guanine-N(7)-)-methyltransferase; PFAM: Putative methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase YP_003686502.1 COGs: COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; InterPro IPR015424:IPR004839:IPR015421; KEGG: dra:DR_1452 aminotransferase, class I; PFAM: aminotransferase class I and II; SPTR: C1XVE0 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; PFAM: Aminotransferase class I and II YP_003686503.1 COGs: COG2897 Rhodanese-related sulfurtransferase; InterPro IPR001763:IPR001307; KEGG: ttj:TTHA1622 thiosulfate sulfurtransferase; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: C1XVD9 Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain YP_003686504.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001279; KEGG: tth:TTC1259 hydrolase; SMART: beta-lactamase domain protein; SPTR: C1XVD8 Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily YP_003686505.1 COGs: COG5421 Transposase; InterPro IPR012337:IPR002559; KEGG: dsy:DSY0689 hypothetical protein; PFAM: transposase IS4 family protein; SPTR: C1XVD6 Transposase; PFAM: Transposase DDE domain YP_003686506.1 COGs: COG0474 Cation transport ATPase; InterProIPR004014:IPR006068:IPR001757:IPR008250:IPR 018303:IPR005834:IPR000695; KEGG: tth:TTC0776 putative cation-transporting ATPase PacL; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; PRIAM: Calcium-transporting ATPase; SMART: cation transporting ATPase domain protein; SPTR: C1XVD3 P-type ATPase, translocating; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; Cation transporting ATPase, C-terminus; haloacid dehalogenase-like hydrolase; Cation transporter/ATPase, N-terminus; TIGRFAM: plasma-membrane calcium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_003686507.1 COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006015:IPR014729:IPR006016; KEGG: rca:Rcas_3776 UspA domain-containing protein; PFAM: UspA domain protein; SPTR: C1XVD2 Universal stress protein UspA-like protein; PFAM: Universal stress protein family YP_003686508.1 COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182:IPR016181; KEGG: ttj:TTHA1799 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: C1XVD1 Acetyltransferase, ribosomal protein N-acetylase YP_003686509.1 COGs: COG0521 Molybdopterin biosynthesis protein; InterPro IPR001453:IPR020817; KEGG: ttj:TTHA0341 molybdopterin biosynthesis enzyme, MoaB; PFAM: molybdopterin binding domain; SMART: molybdopterin binding domain; SPTR: C1XVD0 Molybdopterin adenylyltransferase; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: Probable molybdopterin binding domain; TIGRFAM: molybdenum cofactor synthesis domain YP_003686510.1 COGs: COG1609 Transcriptional regulators; InterPro IPR010982:IPR000843:IPR001761; KEGG: bpl:BURPS1106A_A2822 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; SPTR: C1XVC9 Transcriptional regulator, LacI family; PFAM: Bacterial regulatory proteins, lacI family; family YP_003686511.1 COGs: COG1486 Alpha-galactosidase/6-phospho-beta-glucosidase family 4 of glycosyl hydrolase; InterPro IPR015955:IPR001088:IPR016040; KEGG: rca:Rcas_1884 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 4; SPTR: C1XVC8 Alpha-galactosidase; PFAM: Family 4 glycosyl hydrolase; Family 4 glycosyl hydrolase C-terminal domain YP_003686512.1 InterPro IPR012337:IPR009057:IPR001584; KEGG: saf:SULAZ_1706 putative transposase; PFAM: Integrase catalytic region; SPTR: C1XVC7 Integrase family protein; PFAM: Integrase core domain YP_003686513.1 COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR015424:IPR004839:IPR015422:IPR015421; KEGG: ttj:TTHA0342 N-succinyldiaminopimelate aminotransferase; PFAM: aminotransferase class I and II; SPTR: C1XVC6 Aminotransferase; PFAM: Aminotransferase class I and II YP_003686514.1 COGs: COG2271 Sugar phosphate permease; InterPro IPR016196:IPR011701; KEGG: dda:Dd703_1845 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: C1XVC5 Sugar phosphate permease; PFAM: Major Facilitator Superfamily YP_003686515.1 KEGG: mbt:JTY_2888 hypothetical protein; SPTR: C1XVC4 Putative uncharacterized protein; PFAM: HicB family YP_003686516.1 COGs: COG1848 nucleic acid-binding protein contains PIN domain; InterPro IPR002716:IPR006226; KEGG: sfu:Sfum_0894 PilT domain-containing protein; PFAM: PilT protein domain protein; SPTR: C1XVC3 Predicted nucleic acid-binding protein, contains PIN domain; TIGRFAM: PIN domain protein family protein; PFAM: PIN domain; TIGRFAM: Mycobacterium tuberculosis PIN domain family YP_003686517.1 COGs: COG2008 Threonine aldolase; InterPro IPR015424:IPR015422:IPR001597:IPR015421; KEGG: tth:TTC0397 L-allo-threonine aldolase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; PRIAM: Threonine aldolase; SPTR: C1XVC2 L-threonine aldolase; PFAM: Beta-eliminating lyase YP_003686518.1 KEGG: ttj:TTHA0014 hypothetical protein; SPTR: C1XVC1 Putative uncharacterized protein YP_003686519.1 KEGG: tth:TTC1985 hypothetical protein; SPTR: C1XVC0 Putative uncharacterized protein YP_003686520.1 COGs: COG0584 Glycerophosphoryl diester phosphodiesterase; InterPro IPR004129:IPR017946:IPR000909; KEGG: ttj:TTHB141 putative glycerophosphoryl diester phosphodiesterase; PFAM: glycerophosphoryl diester phosphodiesterase; SPTR: C1XVB9 Glycerophosphoryl diester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase family YP_003686521.1 KEGG: ttj:TTHA1966 hypothetical protein; SPTR: C1XVB8 Putative uncharacterized protein YP_003686522.1 COGs: COG1555 DNA uptake protein and related DNA-binding protein; InterPro IPR000445:IPR003583; KEGG: ttj:TTHA1967 competence protein ComEA-related protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1; SPTR: C1XVB7 Helix-hairpin-helix protein; PFAM: Helix-hairpin-helix motif; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region YP_003686523.1 COGs: COG2333 hydrolase (metallo-beta-lactamase superfamily); InterPro IPR004797:IPR004477:IPR001279; KEGG: ttj:TTHA1968 competence protein ComEC; PFAM: ComEC/Rec2-related protein; SMART: beta-lactamase domain protein; SPTR: C1XVB6 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: Competence protein; Metallo-beta-lactamase superfamily; TIGRFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2 YP_003686524.1 COGs: COG1475 transcriptional regulator protein; InterPro IPR003115:IPR004437; KEGG: tth:TTC1604 chromosome partitioning protein ParB; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; SPTR: C1XVB5 Chromosome segregation DNA-binding protein; TIGRFAM: parB-like partition protein; PFAM: ParB-like nuclease domain; KorB domain; TIGRFAM: ParB-like partition proteins YP_003686525.1 COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: ttj:TTHA1970 ParA family chromosome partitioning ATPase; PFAM: Cobyrinic acid ac-diamide synthase; SPTR: C1XVB4 Chromosome segregation ATPase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_003686526.1 COGs: COG0357 S-adenosylmethionine-dependent methyltransferase involved in cell division; InterPro IPR003682:IPR005479; KEGG: ttj:TTHA1971 16S rRNA methyltransferase GidB; PFAM: glucose inhibited division protein; SPTR: C1XVB3 16S rRNA m(7)G-527 methyltransferase; TIGRFAM: methyltransferase GidB; PFAM: rRNA small subunit methyltransferase G; TIGRFAM: 16S rRNA methyltransferase GidB YP_003686527.1 KEGG: dra:DR_0015 hypothetical protein; SPTR: C1XVB2 Putative uncharacterized protein YP_003686528.1 COGs: COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; InterPro IPR013027:IPR020595:IPR002218:IPR004416; KEGG: tth:TTC1607 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; PFAM: glucose-inhibited division protein A; SPTR: C1XFW1 Glucose-inhibited division protein A; TIGRFAM: glucose inhibited division protein A; PFAM: Glucose inhibited division protein A; TIGRFAM: glucose-inhibited division protein A YP_003686529.1 KEGG: bja:blr0521 hypothetical protein; SPTR: C2CRU3 Possible Fe-S dehydrogenase; PFAM: Rhodanese-like domain YP_003686530.1 KEGG: fal:FRAAL5760 translation initiation factor IF-2; SPTR: C1XWW8 Putative uncharacterized protein YP_003686531.1 InterPro IPR005180; KEGG: tth:TTC1048 hypothetical protein; SPTR: C1XWX0 Putative uncharacterized protein; PFAM: TAT (twin-arginine translocation) pathway signal sequence; Flavocytochrome c sulphide dehydrogenase, flavin-binding; Pyridine nucleotide-disulphide oxidoreductase YP_003686532.1 KEGG: ade:Adeh_0244 LigA; SPTR: Q2IMJ3 LigA; PFAM: Mo-co oxidoreductase dimerisation domain; Oxidoreductase molybdopterin binding domain YP_003686533.1 InterPro IPR005066:IPR014756; KEGG: ttj:TTHA1411 sulfite dehydrogenase SoxC precursor; PFAM: Mo-co oxidoreductase dimerisation domain; SPTR: C1XWX2 Sulfite oxidase-like oxidoreductase; PFAM: Cytochrome c YP_003686534.1 KEGG: chl:Chy400_0215 autotransporter-associated beta strand repeat protein; SPTR: B9LHE5 Autotransporter-associated beta strand repeat protein; PFAM: Cytochrome C biogenesis protein transmembrane region YP_003686535.1 KEGG: GA27442 gene product from transcript GA27442-RA; SPTR: Q9BIT7 Major ampullate spidroin 2-like protein (Fragment); PFAM: Tetratricopeptide repeat YP_003686536.1 KEGG: mrd:Mrad2831_2945 hypothetical protein; SPTR: Q9Q5K9 NTR YP_003686537.1 KEGG: xau:Xaut_4723 SH3 type 3 domain-containing protein; SPTR: C0H6Y8 Putative cuticle protein; PFAM: Subtilase family YP_003686538.1 COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209; KEGG: bsu:BSU10300 serine alkaline protease (subtilisin E); PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: C1XWX7 Subtilisin-like serine protease YP_003686539.1 KEGG: VSX1; visual system homeobox 1; K09335 visual system homeobox protein 1; SPTR: C1XWX8 Putative uncharacterized protein YP_003686540.1 InterPro IPR008985; KEGG: kra:Krad_1281 hypothetical protein; SPTR: C1XWX9 Putative uncharacterized protein YP_003686541.1 KEGG: cak:Caul_4304 thioredoxin reductase; SPTR: C1XWY0 Putative uncharacterized protein; PFAM: Bacterial regulatory protein, arsR family YP_003686542.1 KEGG: GA27442 gene product from transcript GA27442-RA; SPTR: Q6J6N0 Flagelliform silk protein-1 (Fragment); PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains YP_003686543.1 KEGG: Os01g0578800; hypothetical protein; SPTR: C9YY18 Putative uncharacterized protein YP_003686544.1 KEGG: GI20245 gene product from transcript GI20245-RA; SPTR: B4KNK6 GI20245 YP_003686545.1 COGs: COG4237 Hydrogenase 4 membrane component (E); KEGG: sul:SYO3AOP1_0701 hydrogenase 4 membrane component (E); SPTR: C1XWY5 Hydrogenase 4 membrane component (E); PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains YP_003686546.1 KEGG: fal:FRAAL5760 translation initiation factor IF-2; SPTR: Q0RDS4 Translation initiation factor IF-2; PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; Respiratory-chain NADH dehydrogenase, 49 Kd subunit YP_003686547.1 KEGG: tcu:Tcur_1098 ATPase involved in chromosome partitioning-like protein; SPTR: D1A8I8 ATPase involved in chromosome partitioning-like protein; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit YP_003686548.1 KEGG: afw:Anae109_4212 LigA; SPTR: A7HI44 LigA YP_003686549.1 KEGG: bfr:BF3013 hypothetical protein; SPTR: C4RL97 Secreted protein YP_003686550.1 KEGG: hypothetical protein; SPTR: C1XWZ0 Putative uncharacterized protein YP_003686551.1 KEGG: GA27442 gene product from transcript GA27442-RA; SPTR: A8CWM6 Elongation factor G, domain IV YP_003686552.1 KEGG: ade:Adeh_0244 LigA; SPTR: C4RN72 Cytochrome P450; PFAM: Bacterial regulatory proteins, lacI family; family YP_003686553.1 COGs: COG1609 Transcriptional regulators; KEGG: dge:Dgeo_2920 periplasmic binding protein/LacI transcriptional regulator; SPTR: C1XWZ6 Transcriptional regulator; PFAM: Bacterial extracellular solute-binding protein YP_003686554.1 COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: dge:Dgeo_2919 ABC-type sugar transport system, periplasmic component; PFAM: extracellular solute-binding protein family 1; SPTR: C1XWZ7 Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component YP_003686555.1 COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: dge:Dgeo_2918 ABC-type sugar transport system, permease component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XWZ8 Carbohydrate ABC transporter membrane protein 1, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component YP_003686556.1 KEGG: ribonucleic acid binding protein S1, putative; SPTR: B9RI44 Ribonucleic acid binding protein S1, putative YP_003686557.1 KEGG: dba:Dbac_1053 SMC domain protein; SPTR: C1XX01 Putative uncharacterized protein; PFAM: Thioesterase superfamily YP_003686558.1 KEGG: fal:FRAAL5760 translation initiation factor IF-2; SPTR: Q0RDS4 Translation initiation factor IF-2; PFAM: Ribonucleotide reductase, small chain YP_003686559.1 KEGG: similar to splicing coactivator subunit SRm300; K13172 serine/arginine repetitive matrix protein 2; SPTR: B5GHX2 Predicted protein; PFAM: Ribonucleotide reductase N-terminal; Ribonucleotide reductase, all-alpha domain; Ribonucleotide reductase, barrel domain; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit YP_003686560.1 InterPro IPR008926:IPR013509:IPR000788; KEGG: sca:Sca_0379 ribonuceloside diphosphate reductase alpha chain; PFAM: Ribonucleotide reductase large subunit domain protein; ribonucleotide reductase large subunit; SPTR: C1XX04 Ribonucleoside-diphosphate reductase; PFAM: NrdI Flavodoxin like; TIGRFAM: ribonucleoside-diphosphate reductase 2, operon protein nrdI YP_003686561.1 KEGG: bpr:GBP346_A1819 hfq protein; SPTR: A8I3N0 DnaJ-like protein; PFAM: Transposase DDE domain YP_003686562.1 KEGG: rrs:RoseRS_0618 hypothetical protein; SPTR: A5UQY7 Putative uncharacterized protein; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_003686563.1 KEGG: GF12424 gene product from transcript GF12424-RA; SPTR: Q9NHW4 Flagelliform silk protein (Fragment); manually curated; PFAM: Integrase core domain; Transposase YP_003686564.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_003686565.1 COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: deb:DehaBAV1_1282 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XX11 ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region YP_003686566.1 COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterPro IPR017871:IPR003439:IPR013563:IPR010066; KEGG: mba:Mbar_A3673 oligopeptide ABC transporter, ATP-binding protein; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SPTR: C1XX12 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter YP_003686567.1 InterPro IPR007087; KEGG: ttj:TTHB232 transposase; SPTR: B7ABA3 Putative uncharacterized protein; PFAM: Transposase DDE domain YP_003686569.1 KEGG: mac:MA2703 hypothetical protein; SPTR: C1XX17 Transposase family protein YP_003686570.1 KEGG: gym:GYMC10_0373 glycoside hydrolase family 76; SPTR: C1XX19 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2384); TIGRFAM: conserved hypothetical protein TIGR02293 YP_003686571.1 InterPro IPR018271; KEGG: Os05g0199100; hypothetical protein; SPTR: Q7X9J2 Ocs-element binding factor 1 (Fragment); PFAM: RES domain YP_003686572.1 KEGG: nfa:nfa17580 putative methyltransferase; SPTR: Q5YYY7 S-adenosyl-L-methionine-dependent methyltransferase mraW YP_003686573.1 KEGG: hypothetical protein LOC100030639; SPTR: B4V2Z1 Serine/threonine protein kinase; PFAM: 2-phosphosulpholactate phosphatase; TIGRFAM: 2-phosphosulfolactate phosphatase YP_003686574.1 KEGG: Os03g0717300; hypothetical protein; SPTR: B0LU83 Putative plasmid transfer protein; PFAM: Fructose-bisphosphate aldolase class-II; TIGRFAM: ketose-bisphosphate aldolases; fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist YP_003686575.1 COGs: COG0191 Fructose/tagatose bisphosphate aldolase; InterPro IPR013785:IPR000771; KEGG: dge:Dgeo_2083 fructose-1,6-bisphosphate aldolase, class II; PFAM: ketose-bisphosphate aldolase class-II; SPTR: C1XX24 Fructose-bisphosphate aldolase; PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase YP_003686576.1 COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR013785:IPR000056:IPR011060; KEGG: ttj:TTHA0106 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; PRIAM: Ribulose-phosphate 3-epimerase; SPTR: C1XX25 Ribulose-5-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: Phosphoribulokinase / Uridine kinase family YP_003686577.1 COGs: COG0572 Uridine kinase; InterPro IPR006082:IPR006083; KEGG: cyb:CYB_0441 phosphoribulokinase; PFAM: phosphoribulokinase/uridine kinase; SPTR: C1XX26 Phosphoribulokinase; PFAM: ATPase family associated with various cellular activities (AAA); TIGRFAM: probable Rubsico expression protein CbbX YP_003686578.1 KEGG: hypothetical protein; SPTR: A7T9R0 Predicted protein (Fragment); PFAM: Ribulose bisphosphate carboxylase, small chain YP_003686579.1 COGs: COG4451 Ribulose bisphosphate carboxylase small subunit; InterPro IPR000894; KEGG: bxe:Bxe_B2452 ribulose 1,5-bisphosphate carboxylase small subunit; PFAM: ribulose bisphosphate carboxylase small chain; PRIAM: Ribulose-bisphosphate carboxylase; SPTR: C1XX28 Ribulose 1,5-bisphosphate carboxylase small subunit; PFAM: Ribulose bisphosphate carboxylase large chain, N-terminal domain; Ribulose bisphosphate carboxylase large chain, catalytic domain YP_003686580.1 KEGG: MUC2; mucin 2, oligomeric mucus/gel-forming; K10955 intestinal mucin-2; SPTR: Q099Z9 Putative uncharacterized protein; PFAM: Bacterial fructose-1,6-bisphosphatase, glpX-encoded; TIGRFAM: fructose-1,6-bisphosphatase, class II YP_003686581.1 KEGG: sco:SCO5706 translation initiation factor IF-2; SPTR: C0PJF1 Putative uncharacterized protein; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family YP_003686582.1 KEGG: acp:A2cp1_4175 general secretory system II protein E domain protein; SPTR: C7BGM8 Formin 2A; PFAM: DinB family YP_003686583.1 KEGG: rbi:RB2501_05735 hypothetical protein; SPTR: C1XX32 Uncharacterized conserved protein YP_003686584.1 KEGG: annexin VII; SPTR: Q6DCF9 Anxa7 protein YP_003686585.1 KEGG: car:cauri_0512 homoserine O-acetyltransferase; SPTR: C3PLA5 Homoserine O-acetyltransferase; PFAM: Stress responsive A/B Barrel Domain YP_003686586.1 KEGG: similar to hCG22119; K06831 lectin, galactoside-binding, soluble, 3 (galectin 3); SPTR: C1XX34 Putative uncharacterized protein; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED YP_003686587.1 KEGG: hypothetical protein; SPTR: A4HWP8 Chromosome 15 (Fragment); PFAM: Transketolase, thiamine diphosphate binding domain; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: transketolase, bacterial and yeast YP_003686588.1 KEGG: hypothetical protein; SPTR: A4HWP8 Chromosome 15 (Fragment); PFAM: Protein of unknown function (DUF3422) YP_003686589.1 KEGG: bpr:GBP346_A1819 hfq protein; SPTR: A8I3N0 DnaJ-like protein; PFAM: Transposase DDE domain YP_003686590.1 KEGG: BIRC5; baculoviral IAP repeat-containing 5; K08731 baculoviral IAP repeat-containing 5 YP_003686591.1 KEGG: asa:ASA_P5G125 hypothetical protein; SPTR: A4SUM2 Putative uncharacterized protein; PFAM: PIN domain; TIGRFAM: conserved hypothetical protein TIGR00305 YP_003686592.1 KEGG: hypothetical protein; SPTR: C1XX40 Putative uncharacterized protein YP_003686593.1 KEGG: see:SNSL254_p_0005 hypothetical protein; SPTR: A4IV80 Putative membrane protein YP_003686594.1 KEGG: sco:SCO3115 hypothetical protein; SPTR: C0PKV4 Putative uncharacterized protein YP_003686595.1 SPTR: C1XX45 Putative uncharacterized protein YP_003686596.1 KEGG: ACADSB; acyl-Coenzyme A dehydrogenase, short/branched chain; K09478 short/branched chain acyl-CoA dehydrogenase; SPTR: A5HWG4 Dof zinc finger protein 15 (Fragment); PFAM: Bacterial regulatory proteins, gntR family; FCD domain YP_003686597.1 COGs: COG1802 Transcriptional regulators; InterPro IPR000524:IPR011711; KEGG: tth:TT_P0187 putative transposase; PFAM: GntR domain protein; regulatory protein GntR HTH; SPTR: C1XX47 Transcriptional regulator; PFAM: Transposase; Integrase core domain YP_003686598.1 KEGG: acp:A2cp1_2390 transcriptional regulator, Fis family; SPTR: Q9NHW2 Flagelliform silk protein (Fragment); PFAM: CoA-transferase family III YP_003686599.1 KEGG: fal:FRAAL5760 translation initiation factor IF-2; SPTR: Q0RDS4 Translation initiation factor IF-2; PFAM: ABC transporter YP_003686600.1 COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; InterPro IPR017871:IPR003439; KEGG: mno:Mnod_2257 ABC transporter related; PFAM: ABC transporter related; SPTR: B8IA09 ABC transporter related; PFAM: Binding-protein-dependent transport system inner membrane component YP_003686601.1 KEGG: GA27442 gene product from transcript GA27442-RA; SPTR: B5DYN9 GA27442; PFAM: NMT1/THI5 like YP_003686602.1 KEGG: SL44-1; basic proline-rich protein; SPTR: Q95JC9 Basic proline-rich protein; PFAM: HMGL-like YP_003686603.1 SPTR: A7A702 Putative uncharacterized protein YP_003686604.1 KEGG: hypothetical protein LOC100293810; SPTR: O14924 Regulator of G-protein signaling 12; PFAM: PIN domain YP_003686605.1 KEGG: Os02g0831600; hypothetical protein ; K11596 argonaute; SPTR: Q6K972 Protein argonaute 1C; PFAM: SpoVT / AbrB like domain; TIGRFAM: looped-hinge helix DNA binding domain, AbrB family YP_003686606.1 KEGG: gvi:gll1708 hypothetical protein; SPTR: C1XY95 Predicted nucleic acid-binding protein, contains PIN domain; PFAM: Transposase domain (DUF772) YP_003686607.1 KEGG: hypothetical protein; SPTR: A4HWP8 Chromosome 15 (Fragment); PFAM: Amidohydrolase YP_003686608.1 KEGG: nfa:nfa40670 translation initiation factor IF-2; SPTR: Q5YSC6 Translation initiation factor IF-2; PFAM: Glutamine synthetase, catalytic domain YP_003686609.1 COGs: COG0174 Glutamine synthetase; InterPro IPR008147:IPR008146; KEGG: ddr:Deide_3p00760 putative glutamate--ammonia ligase (glutamine synthetase); PFAM: glutamine synthetase catalytic region; SPTR: C1XY99 Glutamine synthetase; PFAM: N-formylglutamate amidohydrolase YP_003686610.1 KEGG: similar to procollagen alpha 2(V); K06236 collagen, type I/II/III/V/XI, alpha; SPTR: Q4R0X3 RacL protein; PFAM: AsnC family YP_003686611.1 KEGG: hypothetical protein LOC100166173; SPTR: C1XSL8 Transposase family protein; PFAM: Transposase DDE domain YP_003686612.1 KEGG: NEURL1B; neuralized homolog 1B (Drosophila); K01931 protein neuralized; SPTR: C1XVT4 Integral membrane protein DUF6; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter YP_003686613.1 KEGG: hypothetical protein; SPTR: B5GAS7 Truncated magnesium or manganese-dependent protein phosphatase (Fragment); PFAM: ABC transporter YP_003686614.1 KEGG: ade:Adeh_1681 PE-PGRS family protein; SPTR: B5GFJ6 Predicted protein; PFAM: Branched-chain amino acid transport system / permease component YP_003686615.1 KEGG: glycine rich secreted cement protein, putative; SPTR: P16818 Uncharacterized protein UL61; PFAM: Branched-chain amino acid transport system / permease component YP_003686616.1 InterPro IPR013032; KEGG: hypothetical protein; SPTR: A4HWP8 Chromosome 15 (Fragment); PFAM: Receptor family ligand binding region YP_003686617.1 COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: rru:Rru_A3728 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: C1XYA7 ABC-type branched-chain amino acid transport system, periplasmic component; PFAM: Putative cyclase YP_003686618.1 KEGG: hypothetical protein; SPTR: Q8VVL8 ORF 5; PFAM: Amino acid permease; TIGRFAM: amino acid permease (GABA permease) YP_003686619.1 KEGG: sma:SAV_3556 hypothetical protein; SPTR: Q82HF3 Putative uncharacterized protein; PFAM: Aminotransferase class I and II; Bacterial regulatory proteins, gntR family YP_003686620.1 KEGG: mxa:MXAN_4461 response regulator; SPTR: Q9Q5K9 NTR; PFAM: Glutamine synthetase, catalytic domain YP_003686621.1 KEGG: COL6A3; collagen, type VI, alpha 3; K06238 collagen, type VI, alpha; SPTR: B5GKD1 Ribose import ATP-binding protein RbsA; PFAM: short chain dehydrogenase YP_003686622.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR016040:IPR002347:IPR002198; KEGG: dfe:Dfer_4671 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: C1XYB2 Putative uncharacterized protein; PFAM: Aldehyde dehydrogenase family YP_003686623.1 KEGG: proteophosphoglycan ppg1; SPTR: A4H7X0 Proteophosphoglycan ppg1; PFAM: GAF domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_003686624.1 KEGG: similar to zinc finger, MYM domain containing 1 YP_003686625.1 KEGG: hypothetical protein; SPTR: C1XYB4 Diguanylate cyclase (GGDEF) domain-containing protein; PFAM: Predicted permease YP_003686626.1 KEGG: sgr:SGR_1811 translation initiation factor IF-2; SPTR: B1VYN5 Translation initiation factor IF-2; PFAM: ABC transporter YP_003686627.1 KEGG: hypothetical protein LOC769126; SPTR: Q2IIH7 PE-PGRS family protein YP_003686628.1 KEGG: dra:DR_B0048 hypothetical protein; SPTR: C1XVF1 Putative uncharacterized protein; PFAM: Alkaline phosphatase YP_003686629.1 KEGG: ade:Adeh_0244 LigA; SPTR: Q2IMJ3 LigA YP_003686630.1 KEGG: ade:Adeh_0244 LigA; SPTR: Q2IMJ3 LigA; PFAM: Cys/Met metabolism PLP-dependent enzyme YP_003686631.1 KEGG: hypothetical protein; SPTR: A4HWP8 Chromosome 15 (Fragment); PFAM: Nitrite and sulphite reductase 4Fe-4S domain; Nitrite/Sulfite reductase ferredoxin-like half domain; TIGRFAM: ferredoxin-sulfite reductase YP_003686632.1 COGs: COG0155 Sulfite reductase beta subunit (hemoprotein); InterPro IPR005117; KEGG: chl:Chy400_0742 sulfite reductase (NADPH); PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; SPTR: C1XVF5 Sulfite reductase (NADPH) beta subunit; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: uroporphyrin-III C-methyltransferase YP_003686633.1 InterPro IPR017975; KEGG: GF12424 gene product from transcript GF12424-RA; SPTR: B3MET3 GF12424; TIGRFAM: siroheme synthase, N-terminal domain YP_003686634.1 KEGG: cai:Caci_7742 translation initiation factor IF-2; SPTR: C7QDX8 Translation initiation factor IF-2; PFAM: ABC transporter; TIGRFAM: sulfate ABC transporter, ATP-binding protein YP_003686635.1 COGs: COG1118 ABC-type sulfate/molybdate transport systems ATPase component; InterPro IPR017871:IPR003439:IPR003593; KEGG: mfa:Mfla_0609 sulphate transport system permease protein 1; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XVF8 Sulfate ABC transporter, ATP-binding protein; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: sulfate ABC transporter, permease protein CysW; sulfate ABC transporter, permease protein YP_003686636.1 KEGG: cai:Caci_7742 translation initiation factor IF-2; SPTR: C7QDX8 Translation initiation factor IF-2; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: sulfate ABC transporter, permease protein; sulfate ABC transporter, permease protein CysT YP_003686637.1 KEGG: proteophosphoglycan ppg1; SPTR: A4H7X0 Proteophosphoglycan ppg1; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: sulfate/thiosulfate-binding protein YP_003686638.1 KEGG: hypothetical protein; SPTR: B5GAS7 Truncated magnesium or manganese-dependent protein phosphatase (Fragment); PFAM: ATP-sulfurylase; TIGRFAM: ATP sulphurylase YP_003686639.1 KEGG: kra:Krad_1443 translation initiation factor IF-2; SPTR: C2ANY0 Bacterial translation initiation factor 2 (BIF-2); PFAM: Phosphoadenosine phosphosulfate reductase family; TIGRFAM: phosophoadenylyl-sulfate reductase (thioredoxin) YP_003686640.1 KEGG: mpo:Mpop_5291 OmpA/MotB domain protein; SPTR: B1N6N4 Putative uncharacterized protein; PFAM: Adenylylsulphate kinase; TIGRFAM: adenylylsulfate kinase (apsK) YP_003686641.1 KEGG: stp:Strop_1370 translation initiation factor IF-2; SPTR: A6GI42 Serine/threonine protein kinase YP_003686642.1 KEGG: hypothetical protein; SPTR: Q4PHD5 Predicted protein; PFAM: MarR family YP_003686643.1 COGs: COG1846 Transcriptional regulators; InterPro IPR011991:IPR000835; KEGG: ade:Adeh_1681 PE-PGRS family protein; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1XVG6 Transcriptional regulator; TIGRFAM: X-X-X-Leu-X-X-Gly heptad repeats; YhgE/Pip C-terminal domain; YhgE/Pip N-terminal domain YP_003686644.1 InterPro IPR000083; KEGG: hypothetical protein LOC700978; SPTR: A1CK66 Sec23/Sec24 family protein; PFAM: Fatty acid desaturase YP_003686645.1 KEGG: ach:Achl_1426 translation initiation factor IF-2; SPTR: B8HG54 Translation initiation factor IF-2 YP_003686646.1 KEGG: ami:Amir_1859 protein of unknown function DUF1680; SPTR: B8AUS6 Putative uncharacterized protein YP_003686647.1 KEGG: SL44-1; basic proline-rich protein; SPTR: Q95JC9 Basic proline-rich protein; PFAM: Integrase core domain YP_003686648.1 InterPro IPR012337:IPR001584; KEGG: vvu:VV2_1151 transposase; PFAM: Integrase catalytic region; SPTR: C1XVH1 Integrase family protein; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003686649.1 KEGG: SORBIDRAFT_09g001760; hypothetical protein; SPTR: C5YYY3 Putative uncharacterized protein Sb09g001760; PFAM: Binding-protein-dependent transport system inner membrane component YP_003686650.1 KEGG: TMEM30A; transmembrane protein 30A; SPTR: Q099Z9 Putative uncharacterized protein; PFAM: Binding-protein-dependent transport system inner membrane component YP_003686651.1 KEGG: hypothetical protein; SPTR: C1RI63 Helicase family protein with metal-binding cysteine cluster; PFAM: ABC transporter; TOBE domain YP_003686652.1 COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR000169:IPR008995:IPR013611; KEGG: smd:Smed_4163 ABC transporter related; PFAM: Transport-associated OB domain protein; SPTR: C1XVH5 ABC-type spermidine/putrescine transport system, ATPase component; PFAM: Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region; transposase, putative, N-terminal domain YP_003686653.1 KEGG: GJ15014 gene product from transcript GJ15014-RA; SPTR: P03211 Epstein-Barr nuclear antigen 1; PFAM: Transposase, Mutator family YP_003686654.1 KEGG: sth:STH317 hypothetical protein; SPTR: Q67SP1 Putative uncharacterized protein YP_003686655.1 KEGG: similar to tripartite motif-containing 47; K12023 tripartite motif-containing protein 47 YP_003686656.1 KEGG: GF24314 gene product from transcript GF24314-RA; SPTR: B3M6C2 GF24314; PFAM: Subtilase family YP_003686657.1 KEGG: GL24660 gene product from transcript GL24660-RA; SPTR: B4H5W3 GL24660; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family YP_003686658.1 KEGG: SORBIDRAFT_07g002970; hypothetical protein; SPTR: C5YN18 Putative uncharacterized protein Sb07g002970 YP_003686659.1 KEGG: secreted protein with cysteine rich repeats and a mucin like threonine rich repeat, signal peptide; SPTR: B5GAS7 Truncated magnesium or manganese-dependent protein phosphatase (Fragment); PFAM: Protein of unknown function (DUF2867); NmrA-like family YP_003686660.1 KEGG: Os03g0100200; hypothetical protein; SPTR: B5I5Y1 Multi-sensor histidine kinase (Fragment); PFAM: Bacterial extracellular solute-binding protein, family 7; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003686661.1 KEGG: proteophosphoglycan ppg4; SPTR: A4HM87 Proteophosphoglycan ppg4; PFAM: ATP-binding region; TIGRFAM: MJ0570-related uncharacterized domain YP_003686662.1 COGs: COG2102 ATPase of PP-loop superfamily; InterPro IPR014729:IPR002761; KEGG: lhk:LHK_02391 putative ATP binding protein; PFAM: protein of unknown function DUF71 ATP-binding region; SPTR: C1XVI5 PP-loop superfamily ATP-utilizing enzyme; PFAM: isoform II YP_003686663.1 KEGG: hypothetical protein; SPTR: C0HHF8 Putative uncharacterized protein; PFAM: Phosphoribosylglycinamide synthetase, N domain YP_003686664.1 COGs: COG0151 Phosphoribosylamine-glycine ligase; InterPro IPR013817:IPR016185:IPR020562; KEGG: ank:AnaeK_1392 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, N-domain; SPTR: C1XVI7 Phosphoribosylamine-glycine ligase YP_003686665.1 KEGG: similar to CG9434-PA; SPTR: A4HWP8 Chromosome 15 (Fragment) YP_003686666.1 KEGG: rha:RHA1_ro06644 translation initiation factor IF-2; SPTR: Q0S219 Translation initiation factor IF-2 YP_003686667.1 SPTR: C1XVJ0 Putative uncharacterized protein YP_003686668.1 InterPro IPR014710:IPR011051:IPR013096; KEGG: sen:SACE_2825 hypothetical protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: C1XVJ3 Putative uncharacterized protein; PFAM: Replication initiator protein A YP_003686669.1 InterPro IPR018245; KEGG: GF24314 gene product from transcript GF24314-RA; SPTR: B5GAS7 Truncated magnesium or manganese-dependent protein phosphatase (Fragment); PFAM: UvrD/REP helicase YP_003686670.1 InterPro IPR002052; KEGG: microtubule-associated protein; SPTR: C1XVJ5 DNA/RNA helicase, superfamily I; PFAM: Helicase conserved C-terminal domain; Domain of unknown function (DUF1998); DEAD/DEAH box helicase YP_003686671.1 KEGG: proteophosphoglycan 5; SPTR: Q4FX62 Proteophosphoglycan 5; PFAM: N-6 DNA Methylase YP_003686672.1 KEGG: hypothetical protein; SPTR: A4HWP8 Chromosome 15 (Fragment); PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain YP_003686673.1 KEGG: aav:Aave_3330 hypothetical protein; SPTR: B5GKD1 Ribose import ATP-binding protein RbsA; TIGRFAM: conserved hypothetical protein; conserved hypothetical protein TIGR02688 YP_003686674.1 KEGG: hypothetical protein LOC100020428; SPTR: C4J3C6 Putative uncharacterized protein; PFAM: Transposase DDE domain YP_003686675.1 KEGG: microtubule-associated protein; SPTR: C1XR16 Pyridine nucleotide-disulphide oxidoreductase YP_003686676.1 KEGG: microtubule-associated protein; SPTR: A4H484 Microtubule-associated protein, putative (Fragment) YP_003686677.1 KEGG: nfa:nfa8110 hypothetical protein; SPTR: Q5Z1N5 Putative uncharacterized protein YP_003686678.1 KEGG: GG18196 gene product from transcript GG18196-RA; SPTR: C1XSL8 Transposase family protein; PFAM: Transposase DDE domain YP_003686679.1 KEGG: chl:Chy400_1523 transposase IS701 family protein; SPTR: C1XVQ0 Transposase family protein (Fragment); PFAM: HTH domain YP_003686680.1 InterPro IPR013196; KEGG: ttj:TTHB186 putative transcriptional regulator; PFAM: Helix-turn-helix type 11 domain protein; SPTR: C1XVK6 Predicted transcriptional regulator, COG2378 YP_003686681.1 KEGG: tth:TT_P0125 hypothetical protein; SPTR: C1XVK7 Putative uncharacterized protein YP_003686682.1 KEGG: hypothetical protein LOC771631; SPTR: C2GJI5 Putative uncharacterized protein YP_003686683.1 KEGG: microtubule-associated protein; SPTR: C1XVK9 Putative uncharacterized protein; PFAM: Helicase conserved C-terminal domain; Exonuclease; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family YP_003686684.1 KEGG: NANOG; Nanog homeobox; K10164 homeobox protein Nanog; SPTR: C0NXH7 GPI mannosyltransferase YP_003686685.1 KEGG: Six5; SIX homeobox 5; SPTR: P54197 Endochitinase 2 YP_003686686.1 KEGG: acp:A2cp1_0454 MJ0042 family finger-like protein; SPTR: B8JB00 MJ0042 family finger-like protein YP_003686687.1 KEGG: hypothetical protein; SPTR: B5GAS7 Truncated magnesium or manganese-dependent protein phosphatase (Fragment); PFAM: RNB domain YP_003686688.1 KEGG: hypothetical protein; SPTR: A4HWP8 Chromosome 15 (Fragment); PFAM: TROVE domain YP_003686689.1 InterPro IPR008858; KEGG: sma:SAV_6350 ribonucleoprotein-related protein; PFAM: TROVE domain protein; SPTR: C1XU39 Integrase family protein; PFAM: Integrase core domain YP_003686690.1 KEGG: TP23; basic proline-rich protein; SPTR: C1XUM2 Putative uncharacterized protein; PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated protein Cas2 YP_003686691.1 KEGG: aav:Aave_3330 hypothetical protein; SPTR: A1TSF1 Uncharacterized protein UPF0065; PFAM: CRISPR associated protein Cas1; TIGRFAM: CRISPR-associated protein Cas1; CRISPR-associated protein Cas1, DVULG subtype YP_003686692.1 KEGG: NR2F1; nuclear receptor subfamily 2, group F, member 1; K08547 nuclear receptor, subfamily 2, group F, member 1; SPTR: Q70KB6 Putative uncharacterized protein; PFAM: Domain of unknown function DUF83; TIGRFAM: CRISPR-associated protein Cas4 YP_003686693.1 KEGG: stp:Strop_1435 hypothetical protein; SPTR: A4X4V1 Putative uncharacterized protein; PFAM: CRISPR-associated protein (Cas_APE2256); TIGRFAM: putative CRISPR-associated protein, APE2256 family YP_003686694.1 KEGG: GA24283 gene product from transcript GA24283-RA; SPTR: A6YP76 Flagelliform spidroin-like protein (Fragment); PFAM: Transposase; Integrase core domain YP_003686695.1 InterPro IPR002514; KEGG: tth:TT_P0186 hypothetical protein; PFAM: transposase IS3/IS911 family protein; SPTR: C1XWP6 Transposase; PFAM: CRISPR-associated protein (cas_TM1812); TIGRFAM: CRISPR-associated protein, TM1812 family; CRISPR-associated DxTHG motif protein YP_003686696.1 KEGG: hypothetical protein; SPTR: C4Y543 Putative uncharacterized protein; PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family YP_003686697.1 COGs: COG1604 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR005537; KEGG: dge:Dgeo_0960 CRISPR-associated Cmr5 family protein; PFAM: protein of unknown function DUF324; SPTR: C1XVM5 CRISPR-associated RAMP protein, Cmr6 family; PFAM: CRISPR-associated protein (Cas_Cmr5); TIGRFAM: CRISPR-associated protein, Cmr5 family YP_003686698.1 KEGG: sgr:SGR_2070 hypothetical protein; SPTR: B1W010 Putative uncharacterized protein; PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family YP_003686699.1 KEGG: mpt:Mpe_A0788 acyl-carrier-protein S-malonyltransferase-like protein; SPTR: C4RPE1 Hsp70-like protein; PFAM: CRISPR-associated protein (Cas_Cmr3); TIGRFAM: CRISPR-associated protein, Cmr3 family YP_003686700.1 InterPro IPR019117; KEGG: dge:Dgeo_0963 hypothetical protein; PFAM: CRISPR-associated protein, Cmr3; SPTR: C1XVM8 CRISPR-associated protein, Cmr3 family; PFAM: CRISPR-associated protein; TIGRFAM: CRISPR-associated protein, Crm2 family YP_003686701.1 KEGG: hypothetical protein; SPTR: Q9DWH3 Pr5; PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, Cmr1 family YP_003686702.1 COGs: COG1367 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR005537:IPR007522; KEGG: dge:Dgeo_0965 CRISPR-associated Cmr1 family protein; PFAM: protein of unknown function DUF324; SPTR: C1XVN0 CRISPR-associated protein, Cmr1 family; TIGRFAM: CRISPR-associated RAMP protein, Cmr1 family; PFAM: Family of unknown function (DUF694); TIGRFAM: CRISPR-associated protein, CT1132 family; CRISPR-associated protein, Csd2 family YP_003686703.1 KEGG: GF24314 gene product from transcript GF24314-RA; SPTR: Q6SSE6 Plus agglutinin; PFAM: CRISPR-associated protein (Cas_Csd1); TIGRFAM: CRISPR-associated protein, Csd1 family YP_003686704.1 KEGG: dra:DR_2417m hypothetical protein; SPTR: A7HI44 LigA; PFAM: CRISPR-associated protein (Cas_Cas5); TIGRFAM: CRISPR-associated protein Cas5, Dvulg subtype; CRISPR-associated protein Cas5, N-terminal domain YP_003686705.1 InterPro IPR010155:IPR013422; KEGG: dge:Dgeo_0238 CRISPR-associated Cas5d family protein; PFAM: CRISPR-associated protein CT1134; SPTR: C1XVN3 CRISPR-associated protein Cas5, Dvulg subtype; TIGRFAM: CRISPR-associated protein Cas5; PFAM: HTH domain; DEAD/DEAH box helicase; TIGRFAM: CRISPR-associated helicase Cas3; uncharacterized domain HDIG YP_003686706.1 InterPro IPR013196; KEGG: dge:Dgeo_2515 helix-turn-helix, type 11; PFAM: Helix-turn-helix type 11 domain protein; SPTR: C1XVN4 Uncharacterized domain HDIG-containing protein YP_003686707.1 KEGG: reu:Reut_B4759 regulatory protein, LuxR; SPTR: C1XVN5 Putative uncharacterized protein YP_003686708.1 KEGG: fre:Franean1_1182 translation initiation factor IF-2; SPTR: A8L6F4 Translation initiation factor IF-2; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_003686709.1 KEGG: bja:blr0521 hypothetical protein; SPTR: Q89X06 Blr0521 protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins YP_003686710.1 KEGG: GH14965 gene product from transcript GH14965-RA; SPTR: B4J144 GH14965; PFAM: Bacterial regulatory proteins, lacI family; family YP_003686711.1 KEGG: stp:Strop_1435 hypothetical protein; SPTR: A4X4V1 Putative uncharacterized protein; PFAM: FAD binding domain YP_003686712.1 InterPro IPR003953; KEGG: dge:Dgeo_3103 secreted protein; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; SPTR: C1XVN9 Glucose inhibited division protein A; PFAM: Binding-protein-dependent transport system inner membrane component YP_003686713.1 COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: dge:Dgeo_3104 ABC transporter, permease component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XVP0 Carbohydrate ABC transporter membrane protein 2, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component YP_003686714.1 COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR017871; KEGG: dge:Dgeo_3105 ABC transporter, permease component; SPTR: C1XVP1 Carbohydrate ABC transporter membrane protein 1, CUT1 family; PFAM: Bacterial extracellular solute-binding protein YP_003686715.1 KEGG: sma:SAV_2551 translation initiation factor IF-2; SPTR: Q7U0P1 PE-PGRS FAMILY PROTEIN; PFAM: Transposase DDE domain YP_003686716.1 KEGG: ade:Adeh_0244 LigA; SPTR: Q2IMJ3 LigA; PFAM: Bacterial extracellular solute-binding proteins, family 3 YP_003686717.1 KEGG: eln1; tropoelastin 1; SPTR: Q0Q5Z2 Tropoelastin 1; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family YP_003686718.1 KEGG: GG22683 gene product from transcript GG22683-RA; SPTR: B3NSK6 GG22683; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family YP_003686719.1 KEGG: GM12418 gene product from transcript GM12418-RA; SPTR: B4I0N4 GM12418; PFAM: ABC transporter YP_003686720.1 KEGG: bpr:GBP346_A1819 hfq protein; SPTR: A8I3N0 DnaJ-like protein; PFAM: Transposase DDE domain YP_003686721.1 InterPro IPR012337; KEGG: chl:Chy400_1523 transposase IS701 family protein; SPTR: C1XZH0 Transposase family protein (Fragment); PFAM: Aminotransferase class I and II YP_003686722.1 COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR015422:IPR015424:IPR004839; KEGG: tth:TT_P0022 histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; SPTR: C1XZH1 Aminotransferase; PFAM: Phosphoglycerate mutase family YP_003686723.1 COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: tth:TT_P0006 phosphoglycerate mutase; PFAM: Phosphoglycerate mutase; SPTR: C1XZH2 Fructose-2,6-bisphosphatase; PFAM: Cobinamide kinase / cobinamide phosphate guanyltransferase YP_003686724.1 KEGG: sro:Sros_2116 translation initiation factor IF-2; SPTR: C9Z250 Putative translation initiation/elongation factor; PFAM: Phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_003686725.1 KEGG: GK21628 gene product from transcript GK21628-RA; SPTR: B4MPC8 GK21628; PFAM: Cobalamin-5-phosphate synthase; TIGRFAM: cobalamin 5'-phosphate synthase/cobalamin synthase YP_003686726.1 KEGG: fre:Franean1_1182 translation initiation factor IF-2; SPTR: A8L6F4 Translation initiation factor IF-2; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_003686727.1 KEGG: mxa:MXAN_4461 response regulator; SPTR: Q1D3Z1 Response regulator; PFAM: Carboxymuconolactone decarboxylase family; TIGRFAM: alkylhydroperoxidase AhpD family core domain YP_003686728.1 KEGG: GJ15014 gene product from transcript GJ15014-RA; SPTR: B4MFL7 GJ15014; PFAM: Transposase DDE domain YP_003686729.1 KEGG: GA27442 gene product from transcript GA27442-RA; SPTR: Q9NHW2 Flagelliform silk protein (Fragment); PFAM: HD domain; GAF domain; TIGRFAM: uncharacterized domain HDIG YP_003686730.1 KEGG: tth:TT_P0187 putative transposase; SPTR: C1XWN1 Transposase; PFAM: Transposase; Integrase core domain YP_003686731.1 KEGG: GJ15014 gene product from transcript GJ15014-RA; SPTR: Q9NHW1 Flagelliform silk protein (Fragment); PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_003686732.1 KEGG: GG18196 gene product from transcript GG18196-RA; SPTR: C1XSL8 Transposase family protein; PFAM: Transposase DDE domain YP_003686733.1 PFAM: NrdI Flavodoxin like; TIGRFAM: ribonucleoside-diphosphate reductase 2, operon protein nrdI YP_003686734.1 COGs: COG1780 Protein involved in ribonucleotide reduction; InterPro IPR004465; KEGG: pjd:Pjdr2_4012 NrdI protein; PFAM: NrdI family protein; SPTR: C1XX05 Ribonucleoside-diphosphate reductase 2, operon protein nrdI; TIGRFAM: NrdI protein; PFAM: Ribonucleotide reductase N-terminal; Ribonucleotide reductase, all-alpha domain; Ribonucleotide reductase, barrel domain; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit YP_003686735.1 KEGG: cgb:cg2176 translation initiation factor IF-2; SPTR: Q7T5C3 Virion glycoprotein G; PFAM: Ribonucleotide reductase, small chain YP_003686736.1 KEGG: rha:RHA1_ro08243 major facilitator transporter; SPTR: Q0RZJ9 Possible transporter, MFS superfamily protein; PFAM: Thioesterase superfamily YP_003686737.1 COGs: COG1607 Acyl-CoA hydrolase; InterPro IPR006683; KEGG: ttj:TTHB207 hypothetical protein; PFAM: thioesterase superfamily protein; SPTR: C1XX02 Acyl-CoA hydrolase YP_003686738.1 KEGG: proteophosphoglycan 5; SPTR: Q099Z9 Putative uncharacterized protein; PFAM: Alpha amylase, catalytic domain YP_003686739.1 KEGG: proteophosphoglycan ppg4; SPTR: A4HM87 Proteophosphoglycan ppg4; PFAM: Binding-protein-dependent transport system inner membrane component YP_003686740.1 COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: dge:Dgeo_2917 ABC-type sugar transport system, permease component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XWZ9 Carbohydrate ABC transporter membrane protein 2, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component YP_003686741.1 COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: dge:Dgeo_2918 ABC-type sugar transport system, permease component; SPTR: C1XWZ8 Carbohydrate ABC transporter membrane protein 1, CUT1 family; PFAM: Bacterial extracellular solute-binding protein YP_003686742.1 COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: dge:Dgeo_2919 ABC-type sugar transport system, periplasmic component; PFAM: extracellular solute-binding protein family 1; SPTR: C1XWZ7 Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: Bacterial regulatory proteins, lacI family; family YP_003686743.1 KEGG: GF13334 gene product from transcript GF13334-RA; SPTR: C1WV38 Putative uncharacterized protein YP_003686744.1 KEGG: ank:AnaeK_1473 response regulator receiver protein; SPTR: B4UJZ5 Response regulator receiver protein YP_003686745.1 KEGG: hypothetical protein LOC100029742; SPTR: Q82IF0 Putative uncharacterized protein YP_003686746.1 KEGG: krh:KRH_14700 histidinol dehydrogenase; SPTR: C1XWY9 Putative uncharacterized protein; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit YP_003686747.1 KEGG: fre:Franean1_2214 hypothetical protein; SPTR: O41935 Putative uncharacterized protein GAMMAHV.M6; PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; Respiratory-chain NADH dehydrogenase, 49 Kd subunit YP_003686748.1 KEGG: GA27442 gene product from transcript GA27442-RA; SPTR: B5DYN9 GA27442; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains YP_003686749.1 COGs: COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter MnhD subunit; KEGG: afw:Anae109_3784 NADH dehydrogenase (quinone); SPTR: C1XWY6 Formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter, MnhD subunit YP_003686750.1 KEGG: fra:Francci3_3562 translation initiation factor IF-2; SPTR: Q2J728 Translation initiation factor IF-2 YP_003686751.1 KEGG: ckp:ckrop_1142 translation initiation factor IF-2; SPTR: C4LJ82 Translation initiation factor IF-2; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains YP_003686752.1 KEGG: scl:sce4985 hypothetical protein; SPTR: A9FKT9 Putative uncharacterized protein; PFAM: Bacterial regulatory protein, arsR family YP_003686753.1 COGs: COG0640 transcriptional regulator protein; InterPro IPR011991:IPR001845; KEGG: cag:Cagg_0742 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: C1XWY1 Transcriptional regulator, ArsR family YP_003686754.1 KEGG: tws:TW634 hypothetical protein; SPTR: C1XWY0 Putative uncharacterized protein YP_003686755.1 KEGG: cef:CE2654 hypothetical protein; SPTR: C1XWX9 Putative uncharacterized protein YP_003686756.1 KEGG: SL44-1; basic proline-rich protein; SPTR: C1XWX8 Putative uncharacterized protein; PFAM: Subtilase family YP_003686757.1 KEGG: hypothetical protein LOC100215998; SPTR: Q6SSE6 Plus agglutinin YP_003686758.1 KEGG: hypothetical protein; SPTR: A4HWP8 Chromosome 15 (Fragment); PFAM: Tetratricopeptide repeat YP_003686759.1 KEGG: pzu:PHZ_c1813 S-layer protein RsaA; SPTR: C0U4U3 ATP-dependent helicase HrpA; PFAM: Cytochrome C biogenesis protein transmembrane region YP_003686760.1 KEGG: sco:SCO5706 translation initiation factor IF-2; SPTR: Q8CJQ8 Translation initiation factor IF-2; PFAM: Cytochrome c YP_003686761.1 InterPro IPR009056:IPR003088; KEGG: ttj:TTHA1410 sulfite dehydrogenase cytochrome subunit SoxD; PFAM: cytochrome c class I; SPTR: C1XWX3 Cytochrome c; PFAM: Mo-co oxidoreductase dimerisation domain; Oxidoreductase molybdopterin binding domain YP_003686762.1 KEGG: GF23569 gene product from transcript GF23569-RA; SPTR: B8A8Z5 Putative uncharacterized protein; PFAM: TAT (twin-arginine translocation) pathway signal sequence; Flavocytochrome c sulphide dehydrogenase, flavin-binding; Pyridine nucleotide-disulphide oxidoreductase YP_003686763.1 COGs: COG1252 NADH dehydrogenase FAD-containing subunit; InterPro IPR019546:IPR013027:IPR006311; KEGG: ttj:TTHA1412 sulfide dehydrogenase flavocytochrome c; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Twin-arginine translocation pathway, signal sequence, subgroup; SPTR: C1XWX1 Sulfide dehydrogenase (Flavocytochrome), flavoprotein subunit YP_003686764.1 KEGG: ami:Amir_1658 PE-PGRS family protein; SPTR: Q090R5 Pyruvate kinase; PFAM: Rhodanese-like domain YP_003686765.1 KEGG: rer:RER_26320 translation initiation factor IF-2; SPTR: C9Z250 Putative translation initiation/elongation factor YP_003686766.1 KEGG: ttj:TTHA1109 putative glycosyltransferase; SPTR: Q5SJA5 Putative glycosyltransferase; PFAM: Cytochrome c YP_003686767.1 KEGG: similar to LReO_3; SPTR: B4MBC0 GJ14320; PFAM: 5'-nucleotidase, C-terminal domain; Calcineurin-like phosphoesterase YP_003686768.1 KEGG: sma:SAV_2551 translation initiation factor IF-2; SPTR: Q82K53 Translation initiation factor IF-2; PFAM: Cytochrome c YP_003686769.1 InterPro IPR009056; KEGG: tth:TTC1053 hypothetical protein; SPTR: C1XWW5 Putative uncharacterized protein YP_003686770.1 KEGG: fre:Franean1_1182 translation initiation factor IF-2; SPTR: Q4T5G5 Chromosome undetermined SCAF9271, whole genome shotgun sequence; PFAM: Sulphur oxidation protein SoxZ YP_003686771.1 InterPro IPR014880; KEGG: tth:TTC1055 hypothetical protein; PFAM: Sulphur oxidation protein SoxZ; SPTR: C1XWW3 Sulfur compound chelating protein SoxZ; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003686772.1 COGs: COG5501 secreted protein; InterPro IPR016568; KEGG: ttj:TTHA1421 sulfur oxidation protein SoxY; SPTR: C1XWW2 Thiosulfate-binding protein SoxY; PFAM: Protein of unknown function, DUF255 YP_003686773.1 PFAM: AhpC/TSA family YP_003686774.1 KEGG: hypothetical protein; SPTR: Q4RGC7 Chromosome 12 SCAF15104, whole genome shotgun sequence. (Fragment) YP_003686775.1 KEGG: TRIM7; tripartite motif-containing 7; K12000 tripartite motif-containing protein 7; SPTR: B2RBZ0 cDNA, FLJ95773, highly similar to Homo sapiens tripartite motif-containing 7 (TRIM7), mRNA; PFAM: Protein of unknown function (DUF1458) YP_003686776.1 KEGG: cms:CMS_2468 hypothetical protein; SPTR: B0RHI7 Putative membrane protein; PFAM: Protein of unknown function (DUF981) YP_003686777.1 KEGG: afw:Anae109_0995 LigA; SPTR: C4RNN9 Type I phosphodiesterase, nucleotide pyrophosphatase; PFAM: RibD C-terminal domain; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: riboflavin-specific deaminase C-terminal domain; riboflavin biosynthesis protein RibD YP_003686778.1 KEGG: GE13038 gene product from transcript GE13038-RA; SPTR: C9Z250 Putative translation initiation/elongation factor; PFAM: Lumazine binding domain; TIGRFAM: riboflavin synthase, alpha subunit YP_003686779.1 KEGG: GA27442 gene product from transcript GA27442-RA; SPTR: B5DYN9 GA27442; PFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_003686780.1 KEGG: SORBIDRAFT_10g024160; hypothetical protein; SPTR: C4RLB9 Putative uncharacterized protein; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase YP_003686781.1 KEGG: nca:Noca_4892 transcriptional activator domain-containing protein; SPTR: C1XWU9 Putative uncharacterized protein; PFAM: Bacterial regulatory protein, arsR family; Rhodanese-like domain YP_003686782.1 KEGG: SCD5; stearoyl-CoA desaturase 5; K00507 stearoyl-CoA desaturase (delta-9 desaturase); SPTR: Q5GYC7 Putative uncharacterized protein YP_003686783.1 KEGG: hypothetical protein; SPTR: Q4PCH7 Putative uncharacterized protein; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_003686784.1 KEGG: mul:MUL_2315 hypothetical protein; SPTR: A0PQR9 Conserved hypothetical alanine and proline rich protein; PFAM: Cytochrome c YP_003686785.1 InterPro IPR009056:IPR003088; KEGG: dge:Dgeo_1149 pyrrolo-quinoline quinone; PFAM: cytochrome c class I; SPTR: C1XWU4 Cytochrome c YP_003686786.1 KEGG: hypothetical protein; SPTR: C5DYL8 ZYRO0F14080p; PFAM: Polyketide cyclase / dehydrase and lipid transport YP_003686787.1 KEGG: CTDP1; CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1; K01090 protein phosphatase; SPTR: C1XWU2 Polyketide cyclase / dehydrase and lipid transport; PFAM: GYD domain YP_003686788.1 InterPro IPR005031; KEGG: noc:Noc_1428 hypothetical protein; PFAM: cyclase/dehydrase; SPTR: C1XWU2 Polyketide cyclase / dehydrase and lipid transport; PFAM: Antibiotic biosynthesis monooxygenase YP_003686789.1 KEGG: rle:pRL120655 hypothetical protein; SPTR: C1XWU0 Putative uncharacterized protein; PFAM: Bacterial transcriptional activator domain YP_003686790.1 KEGG: bbt:BBta_7386 SARP family transcriptional regulator(alpha/beta hydrolase superfamily); SPTR: C1XWT8 Predicted ATPase, COG3903; PFAM: AAA domain (dynein-related subfamily) YP_003686791.1 KEGG: fra:Francci3_3562 translation initiation factor IF-2; SPTR: Q2J728 Translation initiation factor IF-2; PFAM: Predicted metallopeptidase (DUF2201) YP_003686792.1 KEGG: stp:Strop_2867 hypothetical protein; SPTR: C1XWT6 Predicted metallopeptidase (DUF2201); PFAM: Leucine rich repeat variant YP_003686793.1 KEGG: similar to ENSANGP00000003674; SPTR: C6C0D3 Translation initiation factor IF-2 YP_003686794.1 KEGG: USP13; ubiquitin specific peptidase 13 (isopeptidase T-3); K11836 ubiquitin carboxyl-terminal hydrolase 5/13; SPTR: C1XMC3 Uncharacterized protein containing a von Willebrand factor type A (VWA) domain YP_003686795.1 KEGG: kra:Krad_1443 translation initiation factor IF-2; SPTR: A6W7Z2 Translation initiation factor IF-2 YP_003686796.1 KEGG: similar to hippostasin prostate type; SPTR: Q0IZV1 Os09g0547500 protein (Fragment) YP_003686797.1 KEGG: bpr:GBP346_A1819 hfq protein; SPTR: A8I3N0 DnaJ-like protein; PFAM: Transposase DDE domain YP_003686798.1 KEGG: GK24079 gene product from transcript GK24079-RA; SPTR: B4NRE3 GK24079; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_003686799.1 KEGG: hypothetical protein; SPTR: C5DP28 ZYRO0A13662p; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003686800.1 KEGG: ade:Adeh_1562 fis family transcriptional regulator; SPTR: C4UBP9 ATP-dependent RNA helicase rhlE YP_003686801.1 KEGG: mva:Mvan_1879 NADH dehydrogenase subunit G; SPTR: C1XWS9 Sensor protein YP_003686802.1 InterPro IPR018524; KEGG: eln1; tropoelastin 1; SPTR: Q0Q5Z2 Tropoelastin 1; PFAM: Potassium-transporting ATPase A subunit; TIGRFAM: K+-transporting ATPase, KdpA YP_003686803.1 KEGG: hypothetical protein LOC100028423; K06236 collagen, type I/II/III/V/XI, alpha; SPTR: B6VBW3 Putative uncharacterized protein; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; K+-transporting ATPase, B subunit; ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_003686804.1 KEGG: sma:SAV_2551 translation initiation factor IF-2; SPTR: Q2VLH2 Major ampullate spidroin 2-like (Fragment); PFAM: Transposase DDE domain YP_003686805.1 KEGG: SOS1; son of sevenless homolog 1 (Drosophila); K03099 son of sevenless; SPTR: C1XTV6 Putative uncharacterized protein; PFAM: K+-transporting ATPase, c chain; TIGRFAM: K+-transporting ATPase, C subunit YP_003686806.1 KEGG: sco:SCO5706 translation initiation factor IF-2; SPTR: Q8CJQ8 Translation initiation factor IF-2; PFAM: Universal stress protein family; Osmosensitive K+ channel His kinase sensor domain YP_003686807.1 KEGG: hypothetical protein; SPTR: A9U707 Predicted protein (Fragment); PFAM: ABC transporter; ABC nitrate/sulfonate/bicarbonate family transporter, ATPase subunit YP_003686808.1 KEGG: GH22120 gene product from transcript GH22120-RA; SPTR: B2MW78 Mucin (Fragment); PFAM: Binding-protein-dependent transport system inner membrane component YP_003686809.1 KEGG: hypothetical protein; SPTR: Q4Q1Z2 Putative uncharacterized protein; PFAM: Helix-hairpin-helix motif YP_003686810.1 KEGG: hypothetical protein LOC747313; SPTR: C5MKI3 Calcium channel voltage-dependent P/Q type Cav2.1 alpha 1a subunit (Fragment) YP_003686811.1 KEGG: GA27442 gene product from transcript GA27442-RA; SPTR: B5DYN9 GA27442; PFAM: Integrase core domain YP_003686812.1 KEGG: sma:SAV_3443 hypothetical protein; SPTR: Q82HR5 Putative uncharacterized protein YP_003686813.1 KEGG: GL21342 gene product from transcript GL21342-RA; SPTR: B1H2U6 Putative uncharacterized protein (Fragment); PFAM: PIN domain YP_003686814.1 KEGG: cak:Caul_3678 hypothetical protein; SPTR: C1XWQ9 Uncharacterized conserved protein; PFAM: Phd_YefM; TIGRFAM: prevent-host-death family protein YP_003686815.1 PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated protein Cas2 YP_003686816.1 KEGG: proteophosphoglycan ppg1; SPTR: Q4FX61 Proteophosphoglycan ppg1; PFAM: CRISPR associated protein Cas1; TIGRFAM: CRISPR-associated protein Cas1 YP_003686817.1 KEGG: ade:Adeh_1681 PE-PGRS family protein; SPTR: A1YZ52 PdmP3; PFAM: Domain of unknown function DUF83; TIGRFAM: CRISPR-associated protein Cas4 YP_003686818.1 KEGG: kra:Krad_1281 hypothetical protein; SPTR: A6W7I0 Putative uncharacterized protein; PFAM: HTH domain YP_003686819.1 KEGG: ade:Adeh_0244 LigA; SPTR: C1XWQ4 Predicted transcriptional regulator, COG2378; PFAM: DEAD/DEAH box helicase; TIGRFAM: CRISPR-associated HD domain protein; CRISPR-associated helicase Cas3 YP_003686820.1 KEGG: ade:Adeh_1681 PE-PGRS family protein; SPTR: Q2IIH7 PE-PGRS family protein YP_003686821.1 KEGG: hypothetical protein; SPTR: C3YRI3 Putative uncharacterized protein; PFAM: CRISPR-associated negative autoregulator DevR/Csa2; TIGRFAM: CRISPR-associated autoregulator DevR family YP_003686822.1 KEGG: Sgs1; Salivary gland secretion 1; SPTR: Q9VR49 Salivary gland secretion 1 YP_003686823.1 KEGG: hypothetical protein LOC100133756; SPTR: C5YML5 Putative uncharacterized protein Sb07g023145 (Fragment); PFAM: Uncharacterized conserved protein (DUF2276); TIGRFAM: CRISPR-associated protein Cas6 YP_003686824.1 KEGG: SL44-1; basic proline-rich protein; SPTR: Q95JC9 Basic proline-rich protein; PFAM: Integrase core domain YP_003686825.1 KEGG: GA24283 gene product from transcript GA24283-RA; SPTR: A6YP76 Flagelliform spidroin-like protein (Fragment); PFAM: Integrase core domain; Transposase YP_003686826.1 KEGG: GA27442 gene product from transcript GA27442-RA; SPTR: B5DYN9 GA27442; PFAM: Integrase core domain YP_003686828.1 KEGG: lca:LSEI_0345 transposase; SPTR: Q03C68 Transposase; PFAM: Protein of unknown function (DUF433) YP_003686829.1 KEGG: rop:ROP_66830 translation initiation factor IF-2; SPTR: C1B313 Translation initiation factor IF-2 YP_003686830.1 KEGG: similar to hCG1810791; SPTR: Q8CJQ8 Translation initiation factor IF-2; PFAM: Aminotransferase class IV YP_003686831.1 COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR001544; KEGG: ttj:TTHA0621 putative 4-amino-4-deoxychorismate lyase; PFAM: aminotransferase class IV; SPTR: C1XWN9 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; PFAM: Glutamine amidotransferase class-I; chorismate binding enzyme; Anthranilate synthase component I, N terminal region; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase YP_003686832.1 KEGG: ade:Adeh_1681 PE-PGRS family protein; SPTR: Q2IIH7 PE-PGRS family protein; PFAM: Phage integrase family YP_003686833.1 KEGG: stp:Strop_1749 hypothetical protein; SPTR: A4X5R2 Putative uncharacterized protein YP_003686834.1 KEGG: kpu:KP1_1785 putative ATP-dependent RNA helicase; PFAM: alpha/beta hydrolase fold YP_003686835.1 KEGG: hha:Hhal_0624 CRISPR-associated protein VVA1548 family; SPTR: C1XYY3 Putative uncharacterized protein; PFAM: Putative CRISPR-associated protein (Cas_VVA1548); TIGRFAM: putative CRISPR-associated protein, VVA1548 family YP_003686836.1 COGs: COG0666 FOG: Ankyrin repeat; InterPro IPR020683:IPR002110; KEGG: sin:YN1551_2013 ankyrin; PFAM: Ankyrin; SMART: Ankyrin; SPTR: C1XYY2 Ankyrin repeat-containing protein; PFAM: Ankyrin repeat YP_003686837.1 KEGG: pap:PSPA7_0401 hypothetical protein; SPTR: C1XYY1 Putative uncharacterized protein (Fragment) YP_003686838.1 KEGG: mba:Mbar_A0121 cytochrome d ubiquinol oxidase, subunit I; SPTR: B7ABR3 Putative uncharacterized protein YP_003686839.1 KEGG: spl:Spea_2960 Fmu (Sun) domain-containing protein; SPTR: C1XXY4 Putative uncharacterized protein YP_003686840.1 KEGG: cgt:cgR_2240 GTPase ObgE; SPTR: C1XKZ4 Putative uncharacterized protein YP_003686841.1 COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR001959:IPR010095; KEGG: rmr:Rmar_2881 transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; putative transposase IS891/IS1136/IS1341 family; SPTR: C1XXX9 Transposase, IS605 OrfB family, central region; TIGRFAM: transposase, IS605 OrfB family; PFAM: Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region; transposase, putative, N-terminal domain YP_003686842.1 KEGG: pth:PTH_2463 hypothetical protein; SPTR: A5CZE8 Putative uncharacterized protein YP_003686843.1 KEGG: GD21203 gene product from transcript GD21203-RA; SPTR: C6IC80 TonB-dependent receptor plug domain-containing protein YP_003686844.1 InterPro IPR011320:IPR009027:IPR012337; KEGG: mmy:MSC_0328 ribonuclease H-related protein; SPTR: Q1NWE1 Ribonuclease H; PFAM: Caulimovirus viroplasmin YP_003686845.1 COGs: COG1475 transcriptional regulator protein; InterPro IPR003115:IPR004437; KEGG: nwi:Nwi_0254 helix-turn-helix, fis-type; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; SPTR: Q3SW20 Helix-turn-helix, Fis-type; TIGRFAM: parB-like partition protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins YP_003686846.1 COGs: COG4712 conserved hypothetical protein; KEGG: rmr:Rmar_2527 RAD52/22 double-strand break repair protein; SPTR: C1XXX6 Putative uncharacterized protein; PFAM: Rad52/22 family double-strand break repair protein YP_003686847.1 KEGG: rop:ROP_05990 putative drug resistance efflux protein; SPTR: C1ASR4 Putative drug resistance efflux protein YP_003686848.1 KEGG: aav:Aave_0207 ureidoglycolate hydrolase; SPTR: C1XKZ3 Putative uncharacterized protein YP_003686849.1 KEGG: hypothetical protein; SPTR: C1XXY3 Putative uncharacterized protein YP_003686850.1 InterPro IPR001387:IPR010982; KEGG: cak:Caul_2246 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: B0T8N0 Transcriptional regulator, XRE family; PFAM: Helix-turn-helix YP_003686851.1 KEGG: sti:Sthe_2320 HAD-superfamily hydrolase, subfamily IA, variant 1; SPTR: C1XZB3 Putative uncharacterized protein YP_003686852.1 KEGG: par:Psyc_0609 peptidyl-prolyl cis-trans isomerase; SPTR: C1XZB4 Putative uncharacterized protein YP_003686853.1 KEGG: mta:Moth_0956 hypothetical protein; SPTR: C1XZB5 Putative uncharacterized protein YP_003686854.1 KEGG: SORBIDRAFT_10g000780; hypothetical protein; SPTR: C1XZB6 Putative uncharacterized protein YP_003686855.1 KEGG: transcription factor, putative; SPTR: C1XZB7 Putative uncharacterized protein YP_003686856.1 SPTR: C1XZB8 Putative uncharacterized protein YP_003686857.1 KEGG: mmi:MMAR_1017 ferredoxin reductase; SPTR: C1XZB9 Putative uncharacterized protein YP_003686858.1 KEGG: afw:Anae109_4144 zinc finger-domain-containing protein; SPTR: C1XZC0 Putative uncharacterized protein YP_003686859.1 InterPro IPR003115:IPR004437; KEGG: bpu:BPUM_3727 stage 0 DNA-binding protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; SPTR: C1XZC1 ParB-like partition protein; TIGRFAM: parB-like partition protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins YP_003686860.1 KEGG: hoh:Hoch_0956 protein of unknown function DUF2326; SPTR: C1XZC2 Putative uncharacterized protein YP_003686861.1 SPTR: C1XZC3 Putative uncharacterized protein YP_003686862.1 COGs: COG3864 conserved hypothetical protein; InterPro IPR008912:IPR018698; KEGG: dhd:Dhaf_1912 hypothetical protein; PFAM: Protein of unknown function DUF2201, metallopeptidase-related; VWA containing CoxE family protein; SPTR: C1XZC4 Uncharacterized conserved protein; PFAM: Predicted metallopeptidase (DUF2201) YP_003686863.1 COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR000424:IPR012340:IPR016027; KEGG: tth:TTC1741 single-strand DNA binding protein (ssb); PFAM: single-strand binding protein/Primosomal replication protein n; SPTR: C1XZC5 Single-stranded DNA-binding protein; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb) YP_003686864.1 InterPro IPR002559; KEGG: ddr:Deide_3p01971 putative transposase; PFAM: transposase IS4 family protein; SPTR: C1XTM9 Transposase family protein YP_003686865.1 InterPro IPR011335; KEGG: mms:mma_2752 hypothetical protein; SPTR: C1XZC7 Putative uncharacterized protein YP_003686866.1 COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR008258; KEGG: dge:Dgeo_2959 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase catalytic; SPTR: C1XZC8 Soluble lytic murein transglycosylase-like protein; PFAM: Transglycosylase SLT domain YP_003686867.1 KEGG: Os03g0841600; hypothetical protein; SPTR: C1XZC9 Putative uncharacterized protein YP_003686868.1 InterPro IPR001387:IPR010982; KEGG: dge:Dgeo_1366 putative prophage repressor; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: C1XZD0 Predicted transcriptional regulator with C-terminal CBS domains; PFAM: Helix-turn-helix YP_003686869.1 COGs: COG2200 FOG: EAL domain; InterPro IPR000160:IPR001633:IPR003018; KEGG: ccs:CCNA_00089 MHYT/PAS-family GGDEF/EAL protein; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; GAF domain protein; SPTR: C1XZD1 Diguanylate cyclase (GGDEF) domain-containing protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_003686870.1 KEGG: csc:Csac_1379 resolvase domain-containing protein; SPTR: C1XZD2 Putative uncharacterized protein YP_003686871.1 KEGG: triacylglycerol lipase, putative; SPTR: C1XZD3 Putative uncharacterized protein YP_003686872.1 InterPro IPR002559; KEGG: ddr:Deide_3p01971 putative transposase; PFAM: transposase IS4 family protein; SPTR: C1XQ12 Transposase family protein YP_003686873.1 SPTR: C1XZD6 Putative uncharacterized protein YP_003686874.1 COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR014017:IPR014016:IPR000212; KEGG: ttj:TTHA1427 UvrD protein; PFAM: UvrD/REP helicase; SPTR: C1XZD7 DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase YP_003686875.1 KEGG: UDP-N-acetyl-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase T5, putative; SPTR: C1XZD8 Putative uncharacterized protein YP_003686876.1 COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR001959:IPR010095; KEGG: ana:all1684 hypothetical protein; PFAM: transposase IS605 OrfB; putative transposase IS891/IS1136/IS1341 family; SPTR: C1XZE2 Transposase, IS605 OrfB family, central region; TIGRFAM: transposase, IS605 OrfB family; PFAM: Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region YP_003686877.1 COGs: COG1943 Transposase and inactivated derivatives; InterPro IPR002686; KEGG: dae:Dtox_1928 transposase IS200-family protein; PFAM: transposase IS200-family protein; SPTR: C8VY87 Transposase IS200-family protein; PFAM: Transposase IS200 like YP_003686878.1 COGs: COG1484 DNA replication protein; InterPro IPR002611; KEGG: ele:Elen_1499 IstB domain protein ATP-binding protein; PFAM: IstB domain protein ATP-binding protein; SPTR: C1XKZ1 Putative uncharacterized protein; PFAM: IstB-like ATP binding protein YP_003686879.1 KEGG: bps:BPSL2579 hypothetical protein; SPTR: C1XZ19 Putative uncharacterized protein YP_003686880.1 KEGG: nmu:Nmul_A0060 hypothetical protein; SPTR: C1XZ20 Putative uncharacterized protein YP_003686881.1 KEGG: cai:Caci_5301 tetratricopeptide TPR_4; SPTR: C1XZ21 Putative uncharacterized protein YP_003686882.1 InterPro IPR017937:IPR012336; KEGG: chl:Chy400_3418 DsbA oxidoreductase; SPTR: C1XZ22 Putative uncharacterized protein YP_003686883.1 COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR007831:IPR001482:IPR003593; KEGG: ttj:TTHA0364 type IV pilus assembly protein PilF; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; SPTR: C1XZ23 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain YP_003686884.1 COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR001482:IPR006321:IPR003593; KEGG: ttj:TTHA0365 type IV pilus assembly protein, pilus retraction protein PilT; PFAM: type II secretion system protein E; SMART: AAA ATPase; SPTR: C1XZ25 Pilus retraction ATPase PilT; TIGRFAM: twitching motility protein; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT YP_003686885.1 KEGG: dge:Dgeo_1726 fimbrial assembly; SPTR: C1XZ26 Putative uncharacterized protein YP_003686886.1 KEGG: acp:A2cp1_0677 pilus assembly protein PilO; SPTR: C1XZ27 Putative uncharacterized protein; PFAM: Pilus assembly protein, PilO YP_003686887.1 KEGG: hypothetical protein; SPTR: C1XZ28 Putative uncharacterized protein YP_003686888.1 COGs: COG1450 Type II secretory pathway component PulD; InterPro IPR005644:IPR004846; KEGG: tth:TTC1017 competence protein PilQ; PFAM: type II and III secretion system protein; NolW domain protein; SPTR: C1XZ29 Type II secretory pathway, component PulD; PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein YP_003686889.1 KEGG: gau:GAU_0582 hypothetical protein; SPTR: C1XZ30 Putative uncharacterized protein YP_003686890.1 KEGG: vei:Veis_1492 zinc finger/thioredoxin putative; SPTR: C1XZ31 Putative uncharacterized protein YP_003686891.1 COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR003004:IPR018076; KEGG: ttj:TTHA0794 pilus assembly protein PilC; PFAM: Type II secretion system F domain; SPTR: C1XZ32 Type II secretory pathway, component PulF; PFAM: Bacterial type II secretion system protein F domain YP_003686892.1 InterPro IPR012902:IPR001120; KEGG: tle:Tlet_0903 general secretion pathway protein G; SPTR: C1XZ33 Prepilin-type N-terminal cleavage/methylation domain-containing protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_003686893.1 COGs: COG4570 Holliday junction resolvase; InterPro IPR008822:IPR016281; KEGG: ecr:ECIAI1_0773 endodeoxyribonuclease RUS; PFAM: endodeoxyribonuclease RusA; SPTR: C1XZ34 Holliday junction resolvase; PFAM: Endodeoxyribonuclease RusA YP_003686894.1 COGs: COG0305 Replicative DNA helicase; InterPro IPR007693:IPR016136:IPR007694:IPR003593:IPR007692; KEGG: ttj:TTHA1470 replicative DNA helicase DnaB; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; SPTR: C1XZ35 Primary replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase YP_003686895.1 InterPro IPR012902; KEGG: tth:TT_P0075 hypothetical protein; SPTR: C1XZ36 Prepilin-type N-terminal cleavage/methylation domain-containing protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_003686896.1 InterPro IPR012902; KEGG: gau:GAU_0582 hypothetical protein; SPTR: C1XZ37 Putative uncharacterized protein YP_003686897.1 InterPro IPR004830; KEGG: dra:DR_0535 hypothetical protein; SPTR: C1XZ38 Leucine rich repeat protein; PFAM: leucine rich repeat variant YP_003686898.1 InterPro IPR012902:IPR001120; KEGG: gau:GAU_0582 hypothetical protein; SPTR: C1XZ39 Prepilin-type N-terminal cleavage/methylation domain-containing protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_003686899.1 KEGG: gau:GAU_2472 hypothetical protein; InterPro IPR016160; SPTR: C1XZ40 Putative uncharacterized protein YP_003686900.1 KEGG: nar:Saro_1144 hypothetical protein; SPTR: C1XZ41 Putative uncharacterized protein YP_003686901.1 COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: ttj:TTHA0266 cell wall-binding endopeptidase-related protein; PFAM: NLP/P60 protein; SPTR: C1XZ42 Cell wall-associated hydrolase, invasion-associated protein; PFAM: NlpC/P60 family YP_003686902.1 KEGG: pth:PTH_2339 hypothetical protein; SPTR: C1XZ43 Putative uncharacterized protein YP_003686903.1 KEGG: sab:SAB2556c ATP phosphoribosyltransferase regulatory subunit; SPTR: C1XZ44 Putative uncharacterized protein YP_003686904.1 KEGG: dde:Dde_3126 alcohol dehydrogenase, iron-containing; SPTR: C1XZ45 Putative uncharacterized protein YP_003686905.1 KEGG: Hypothetical protein CBG04644; SPTR: C1XZ46 Putative uncharacterized protein YP_003686906.1 KEGG: ttj:TTHB120 hypothetical protein; SPTR: C1XZ47 Putative uncharacterized protein YP_003686907.1 InterPro IPR020579; KEGG: ooe:OEOE_1237 exodeoxyribonuclease VII large subunit; PFAM: Exonuclease VII, large subunit-like; SPTR: C1XZ48 Exonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit YP_003686908.1 SPTR: C1XZ49 Putative uncharacterized protein; KEGG: pag:PLES_20781 putative competence protein YP_003686909.1 SPTR: C1XZ50 Putative uncharacterized protein; KEGG: sma:SAV_2631 DNA processing smf-family protein YP_003686910.1 SPTR: A4CVI1 PsbP; KEGG: bcm:Bcenmc03_1422 major facilitator transporter YP_003686911.1 SPTR: C1XZD3 Putative uncharacterized protein; KEGG: rxy:Rxyl_1807 hypothetical protein YP_003686912.1 SPTR: C6BFW6 Putative uncharacterized protein; KEGG: rpf:Rpic12D_2965 hypothetical protein YP_003686913.1 SPTR: A1TAE6 Major facilitator superfamily MFS_1; KEGG: mva:Mvan_3349 major facilitator superfamily transporter YP_003686914.1 COGs: COG0796 Glutamate racemase; InterPro IPR015942:IPR001920:IPR018187; SPTR: Q72I52 Glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; PRIAM: Glutamate racemase; KEGG: tth:TTC1280 glutamate racemase; PFAM: Asp/Glu/Hydantoin racemase; TIGRFAM: glutamate racemase YP_003686915.1 SPTR: C1XZG0 Putative uncharacterized protein (Fragment); KEGG: ML protein YP_003686916.1 SPTR: C1XZF9 Putative uncharacterized protein; KEGG: cak:Caul_4924 hexapaptide repeat-containing transferase YP_003686917.1 SPTR: C1XZF8 Putative uncharacterized protein; KEGG: hha:Hhal_0624 CRISPR-associated protein VVA1548 family; PFAM: Putative CRISPR-associated protein (Cas_VVA1548); TIGRFAM: putative CRISPR-associated protein, VVA1548 family YP_003686918.1 COGs: COG3505 Type IV secretory pathway VirD4 protein; InterPro IPR003688; SPTR: C1XZF6 Type IV secretory pathway, VirD4 component; PFAM: TRAG family protein; KEGG: pzu:PHZ_c2357 type IV secretory pathway, VirD4 component; PFAM: TraG/TraD family YP_003686919.1 COGs: COG3854 conserved hypothetical protein; InterPro IPR003593; SPTR: C1XZF5 Putative uncharacterized protein; SMART: AAA ATPase; KEGG: cpo:COPRO5265_0460 R3H domain protein; TIGRFAM: stage III sporulation protein AA YP_003686920.1 SPTR: C1XZF4 Putative uncharacterized protein; KEGG: rmr:Rmar_1987 ribonuclease H YP_003686921.1 SPTR: C1XZF3 Putative uncharacterized protein YP_003686922.1 SPTR: C1XZF2 Putative uncharacterized protein; KEGG: dge:Dgeo_2952 hypothetical protein YP_003686923.1 COGs: COG3505 Type IV secretory pathway VirD4 protein; InterPro IPR003688; SPTR: C1XZF1 Type IV secretory pathway, VirD4 component; PFAM: TRAG family protein; KEGG: dge:Dgeo_2951 ATPase involved in conjugal plasmid transfer TraG; PFAM: TraG/TraD family YP_003686924.1 COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR001959:IPR010095; TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; putative transposase IS891/IS1136/IS1341 family; SPTR: C1XZF0 Transposase, IS605 OrfB family, central region; KEGG: rmr:Rmar_1189 transposase, IS605 OrfB family; PFAM: Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region YP_003686925.1 SPTR: C1XZE9 Putative uncharacterized protein; KEGG: jan:Jann_0917 hypothetical protein YP_003686926.1 SPTR: C1XZE8 Putative uncharacterized protein; KEGG: M protein repeat-containing protein YP_003686927.1 COGs: COG3451 Type IV secretory pathway VirB4 protein; SPTR: C1XZE7 Putative uncharacterized protein; KEGG: dge:Dgeo_2948 type IV secretory pathway VirB4 component, ATPase TraC; PFAM: Domain of unknown function DUF87 YP_003686928.1 SPTR: C1XZE6 Putative uncharacterized protein; KEGG: dba:Dbac_2438 protein of unknown function DUF1295 YP_003686929.1 SPTR: C1XZE5 Putative uncharacterized protein; KEGG: vfm:VFMJ11_A1246 OqxB YP_003686930.1 SPTR: C1XZE4 Putative uncharacterized protein (Fragment); KEGG: hypothetical protein YP_003686931.1 KEGG: dge:Dgeo_2963 hypothetical protein; SPTR: C1XZ16 Putative uncharacterized protein YP_003686932.1 SPTR: C1XZ15 Putative uncharacterized protein; KEGG: mno:Mnod_5834 hypothetical protein YP_003686933.1 KEGG: RCJMB04_20o15, MGEA5; meningioma expressed antigen 5 (hyaluronidase); SPTR: C1XZ14 Putative uncharacterized protein YP_003686934.1 SPTR: C1XZ11 Putative uncharacterized protein; KEGG: lhk:LHK_03233 ErfK/YbiS/YcfS/YnhG family protein YP_003686935.1 COGs: COG3872 metal-dependent protein; InterPro IPR010787; SPTR: C1XZ10 Predicted metal-dependent enzyme, COG3872; PFAM: protein of unknown function DUF1385; KEGG: ppd:Ppro_2648 hypothetical protein; PFAM: Protein of unknown function (DUF1385) YP_003686936.1 InterPro IPR013762:IPR011010; SPTR: C1XZ09 Site-specific recombinase XerD; KEGG: tth:TT_P0208 hypothetical protein; PFAM: Phage integrase family YP_003686937.1 COGs: COG1061 DNA or RNA helicase of superfamily II; InterPro IPR006935:IPR001650:IPR014021:IPR014001; SPTR: C1XZ08 DNA/RNA helicase, superfamily II; PFAM: type III restriction protein res subunit; helicase domain protein; SMART: DEAD-like helicase; KEGG: esi:Exig_0310 type III restriction protein res subunit; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit YP_003686938.1 SPTR: C1XZ07 Putative uncharacterized protein; KEGG: hypothetical protein ; K11274 chromosome transmission fidelity protein 4 YP_003686939.1 SPTR: C1XZ06 Putative uncharacterized protein; KEGG: fra:Francci3_3745 superfamily I DNA/RNA helicase YP_003686940.1 SPTR: C1XZ05 Putative uncharacterized protein; KEGG: pna:Pnap_4432 hypothetical protein YP_003686941.1 InterPro IPR001650:IPR014021:IPR000330:IPR014001; KEGG: sul:SYO3AOP1_1670 helicase domain protein; SPTR: C1XZ04 DNA/RNA helicase, superfamily II; SMART: helicase domain protein; DEAD-like helicase; PFAM: helicase domain protein; SNF2-related protein; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain YP_003686942.1 SPTR: C1XZ03 Putative uncharacterized protein; KEGG: ppr:PBPRA1733 hypothetical protein YP_003686943.1 SPTR: Q60BP2 Cytochrome c family protein; KEGG: mca:MCA0424 cytochrome c family protein YP_003686944.1 COGs: COG0338 Site-specific DNA methylase; InterPro IPR002294:IPR012327; SPTR: A6TQX6 DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: amt:Amet_2440 DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; TIGRFAM: DNA adenine methylase (dam) YP_003686945.1 InterPro IPR010095; SPTR: C1XZ00 Transposase; PFAM: transposase IS605 OrfB; KEGG: ppd:Ppro_3812 transposase, IS605 OrfB; PFAM: Putative transposase DNA-binding domain YP_003686946.1 SPTR: C1XYZ9 Putative uncharacterized protein; KEGG: ami:Amir_5476 transcriptional regulator, XRE family YP_003686947.1 SPTR: C1XYZ8 Putative uncharacterized protein; KEGG: nar:Saro_0204 threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase YP_003686948.1 SPTR: C1XYZ7 Putative uncharacterized protein; KEGG: similar to Ubiquitin-protein ligase E3B; K10588 ubiquitin-protein ligase E3 B YP_003686949.1 InterPro IPR001119; SPTR: C1XYZ5 Putative S-layer protein; PFAM: S-layer domain protein; KEGG: ttj:TTHA1893 S-layer protein precursor (P100 protein); PFAM: S-layer homology domain YP_003686950.1 SMART: AAA ATPase; SPTR: C1XYZ4 Putative uncharacterized protein; KEGG: ddr:Deide_16210 putative exodeoxyribonuclease V, alpha subunit; InterPro IPR003593; COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; PFAM: Putative ATPase (DUF699); TIGRFAM: helicase, putative, RecD/TraA family YP_003686951.1 SPTR: C1XYZ3 Putative uncharacterized protein; KEGG: rca:Rcas_0382 heat repeat-containing PBS lyase YP_003686952.1 SPTR: C1XYZ2 Putative uncharacterized protein; KEGG: cpc:Cpar_0138 periplasmic solute binding protein YP_003686953.1 InterPro IPR013324:IPR007624; SPTR: C1XYZ1 RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; KEGG: mea:Mex_2p1319 putative RNA polymerase, sigma 70 (sigma D) factor; PFAM: Sigma-70 region 3 YP_003686954.1 SPTR: C1XYZ0 Putative uncharacterized protein; KEGG: svi:Svir_35840 helicase family protein with metal-binding cysteine cluster YP_003686955.1 InterPro IPR012933; SPTR: Q5SJS6 Putative uncharacterized protein TTHA0932; PFAM: YcfA family protein; KEGG: ttj:TTHA0932 hypothetical protein; PFAM: YcfA-like protein YP_003686956.1 InterPro IPR005357; SPTR: C1XYY9 Uncharacterized protein family (UPF0150); PFAM: protein of unknown function UPF0150; KEGG: btr:Btr_0963 hypothetical protein YP_003686957.1 SPTR: C1XYY8 Putative uncharacterized protein; KEGG: afw:Anae109_0435 glycerophosphoryl diester phosphodiesterase YP_003686958.1 SPTR: C1XYY7 Putative uncharacterized protein; KEGG: cja:CJA_3492 transcriptional regulator, LysR family YP_003686959.1 SPTR: C1XYY6 Putative uncharacterized protein; KEGG: hba:Hbal_1172 TonB family protein YP_003686960.1 COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; SPTR: C1XYY5 ATPase involved in chromosome partitioning; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: tth:TT_P0084 soj protein; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_003686961.1 COGs: COG1475 transcriptional regulator protein; InterPro IPR004437:IPR003115; KEGG: tth:TT_P0083 ParB family chromosome partioning protein; TIGRFAM: parB-like partition protein; SMART: ParB domain protein nuclease; SPTR: C1XYY4 ParB family protein; PFAM: ParB domain protein nuclease; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins