-- dump date 20120504_152612 -- class Genbank::CDS -- table cds_note -- id note YP_004510958.1 SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core; TIGRFAM: Chromosomal replication control, initiator DnaA; KEGG: mca:MCA3033 chromosomal replication initiator protein DnaA; HAMAP: Chromosomal replication control, initiator DnaA; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal YP_004510959.1 SMART: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: mca:MCA3032 DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain YP_004510960.1 TIGRFAM: DNA-binding, RecF; HAMAP: DNA replication and repair protein recF; KEGG: pmy:Pmen_0003 recombination protein F; PFAM: RecF/RecN/SMC protein, N-terminal YP_004510961.1 SMART: DNA topoisomerase, type IIA, subunit B or N-terminal; ATP-binding region, ATPase-like; TIGRFAM: DNA gyrase, subunit B; KEGG: mca:MCA3030 DNA gyrase, B subunit; PFAM: DNA topoisomerase, type IIA, subunit B, region 2; ATP-binding region, ATPase-like; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal YP_004510962.1 KEGG: oan:Oant_1158 hypothetical protein YP_004510963.1 KEGG: bch:Bcen2424_0193 hypothetical protein YP_004510964.1 KEGG: azl:AZL_d03810 hypothetical protein YP_004510965.1 manually curated; PFAM: Helix-turn-helix type 3; KEGG: helix-turn-helix domain-containing protein; SMART: Helix-turn-helix type 3 YP_004510966.1 KEGG: swd:Swoo_0415 hypothetical protein YP_004510967.1 manually curated; PFAM: Helix-turn-helix type 3; KEGG: mes:Meso_3488 XRE family transcriptional regulator; SMART: Helix-turn-helix type 3 YP_004510968.1 PFAM: TnsA endonuclease, N-terminal; KEGG: bgf:BC1003_0016 hypothetical protein YP_004510969.1 PFAM: Integrase, catalytic core; KEGG: bgf:BC1003_0017 integrase catalytic region YP_004510970.1 KEGG: bgf:BC1003_0018 TniB family protein; PFAM: Bacterial TniB; SMART: ATPase, AAA+ type, core YP_004510971.1 KEGG: bgf:BC1003_0019 hypothetical protein YP_004510972.1 PFAM: HTH transcriptional regulator, MerR; KEGG: bgf:BC1003_0019 hypothetical protein YP_004510974.1 KEGG: aas:Aasi_0854 hypothetical protein; PFAM: Sel1-like; SMART: Sel1-like YP_004510977.1 KEGG: hmu:Hmuk_1370 hypothetical protein YP_004510978.1 PFAM: NUDIX hydrolase domain; KEGG: hch:HCH_05717 hypothetical protein YP_004510979.1 PFAM: Curli production assembly/transport component CsgG; KEGG: acp:A2cp1_0420 curli production assembly/transport component CsgG YP_004510980.1 KEGG: ade:Adeh_0393 hypothetical protein YP_004510981.1 PFAM: Protein of unknown function DUF799; KEGG: acp:A2cp1_0423 protein of unknown function DUF799 YP_004510982.1 PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: dma:DMR_11750 PemI-like protein 1 YP_004510983.1 KEGG: vei:Veis_4993 hypothetical protein YP_004510984.1 KEGG: mmw:Mmwyl1_4196 transcriptional regulator YP_004510985.1 KEGG: hypothetical protein YP_004510986.1 KEGG: hypothetical protein YP_004510987.1 KEGG: hypothetical protein YP_004510988.1 KEGG: cja:CJA_1537 hypothetical protein YP_004510990.1 KEGG: pct:PC1_0653 hypothetical protein YP_004510991.1 KEGG: hypothetical protein YP_004510992.1 KEGG: bgf:BC1003_0015 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004510993.1 KEGG: bpt:Bpet3736 transposase YP_004510994.1 PFAM: TnsA endonuclease, N-terminal; KEGG: bgf:BC1003_0016 hypothetical protein YP_004510995.1 PFAM: Integrase, catalytic core; Transposase-like, Mu, C-terminal; KEGG: bgf:BC1003_0017 integrase catalytic region YP_004510996.1 KEGG: bgf:BC1003_0018 TniB family protein; PFAM: Bacterial TniB; SMART: ATPase, AAA+ type, core YP_004510997.1 KEGG: bgf:BC1003_0019 hypothetical protein YP_004510999.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: cvi:CV_0127 cytidine deaminase YP_004511001.1 KEGG: sma:SAV_4464 deoxycytidine triphosphate deaminase YP_004511002.1 PFAM: Thymidylate synthase ThyX; TIGRFAM: Thymidylate synthase ThyX; HAMAP: Thymidylate synthase thyX; KEGG: svi:Svir_25280 FAD-dependent thymidylate synthase YP_004511003.1 PFAM: Carbohydrate/purine kinase; KEGG: mem:Memar_0859 ribokinase-like domain-containing protein YP_004511005.1 KEGG: slt:Slit_0086 hypothetical protein YP_004511007.1 KEGG: xac:XAC2177 hypothetical protein YP_004511008.1 KEGG: sal:Sala_0429 hypothetical protein YP_004511009.1 KEGG: lch:Lcho_4144 transposase IS3/IS911 family protein; manually curated; PFAM: Transposase IS3/IS911 YP_004511010.1 KEGG: sal:Sala_0430 hypothetical protein YP_004511011.1 KEGG: pna:Pnap_1740 transposase YP_004511012.1 PFAM: Integrase, catalytic core; KEGG: ppr:PBPRB1144 transposase YP_004511013.1 PFAM: Phosphoglycerate mutase; KEGG: dno:DNO_1344 phosphoglycerate mutase YP_004511014.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold-3; GAF; PAS fold-4; PAS fold; KEGG: dar:Daro_3445 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; GAF; PAC motif; PAS YP_004511015.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vha:VIBHAR_06892 methylmalonyl CoA epimerase YP_004511016.1 KEGG: slo:Shew_3184 hypothetical protein YP_004511017.1 KEGG: dba:Dbac_1033 transport-associated; PFAM: Transport-associated; SMART: Transport-associated and nodulation region, bacteria YP_004511018.1 KEGG: meh:M301_0039 transglutaminase domain protein; PFAM: Transglutaminase-like; Bacterial transglutaminase-like, N-terminal; SMART: Transglutaminase-like YP_004511019.1 PFAM: Cyclic nucleotide-binding; KEGG: pna:Pnap_1316 cyclic nucleotide-binding domain-containing protein YP_004511022.1 KEGG: mxa:MXAN_3732 hypothetical protein YP_004511023.1 KEGG: slt:Slit_0674 transmembrane protein YP_004511024.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: csh:Closa_1075 cytidine deaminase YP_004511025.1 PFAM: Radical SAM; KEGG: pth:PTH_0594 Fe-S oxidoreductases YP_004511028.1 PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: mca:MCA0499 hypothetical protein YP_004511029.1 KEGG: bgf:BC1003_1383 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004511030.1 KEGG: syp:SYNPCC7002_A2445 oxidoreductase, FAD/FMN-binding protein; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal YP_004511031.1 PFAM: NUDIX hydrolase domain; KEGG: pmr:PMI2395 NUDIX-family hydrolase YP_004511032.1 PFAM: Band 7 protein; KEGG: pmr:PMI2396 hypothetical protein YP_004511033.1 KEGG: pmr:PMI2397 hypothetical protein YP_004511034.1 PFAM: GCN5-related N-acetyltransferase; KEGG: app:CAP2UW1_2360 GCN5-related N-acetyltransferase YP_004511036.1 KEGG: nde:NIDE1068 acetyltransferase, GNaT family; manually curated; PFAM: GCN5-related N-acetyltransferase YP_004511037.1 PFAM: Transposase, IS4-like; KEGG: mac:MA1045 transposase YP_004511038.1 PFAM: Negative transcriptional regulator; KEGG: dar:Daro_0091 negative transcriptional regulator YP_004511039.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: mca:MCA2470 ferredoxin, 4Fe-4S YP_004511040.1 KEGG: mca:MCA0544 elongation factor G; TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal YP_004511041.1 TIGRFAM: Ketopantoate reductase ApbA/PanE; KEGG: mca:MCA2523 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; Ketopantoate reductase ApbA/PanE, C-terminal YP_004511042.1 KEGG: mca:MCA2522 DnaA domain-containing protein; TIGRFAM: Chromosomal replication control, regulator Hda; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda) YP_004511043.1 PFAM: Protein of unknown function DUF2069, membrane; KEGG: tgr:Tgr7_2248 transmembrane protein YP_004511044.1 KEGG: neu:NE0806 hypothetical protein YP_004511046.1 TIGRFAM: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; KEGG: psa:PST_3678 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; PFAM: Mur ligase, N-terminal; Mur ligase, central; Mur ligase, C-terminal YP_004511047.1 PFAM: Ankyrin repeat; KEGG: spu:765588 similar to ankyrin 2,3/unc44 YP_004511048.1 KEGG: tgr:Tgr7_2722 ApaG domain protein; HAMAP: Protein ApaG; PFAM: ApaG YP_004511049.1 PFAM: Metallophosphoesterase; TIGRFAM: Bis(5'-nucleosyl)-tetraphosphatase (symmetrical); KEGG: mca:MCA0159 diadenosine tetraphosphatase; HAMAP: Bis(5'-nucleosyl)-tetraphosphatase, symmetrical YP_004511050.1 KEGG: nhl:Nhal_0644 hypothetical protein YP_004511051.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: cat:CA2559_08396 OmpA/MotB YP_004511052.1 KEGG: mpt:Mpe_A2627 formaldehyde-activating enzyme; TIGRFAM: Formaldehyde-activating enzyme; PFAM: Formaldehyde-activating enzyme YP_004511053.1 KEGG: mca:MCA3087 hypothetical protein YP_004511054.1 KEGG: cpi:Cpin_5361 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004511055.1 KEGG: lby:Lbys_2566 transporter, hydrophobe/amphiphile efflux-1 (hae1) family; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004511056.1 KEGG: lby:Lbys_2567 efflux transporter, rnd family, mfp subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004511058.1 KEGG: mca:MCA3086 TPR domain-containing protein; PFAM: Tetratricopeptide TPR-1; von Willebrand factor, type A; SMART: von Willebrand factor, type A; Tetratricopeptide repeat YP_004511059.1 KEGG: mca:MCA3085 BatB protein, PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A YP_004511060.1 KEGG: gpb:HDN1F_30440 hypothetical protein YP_004511061.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; CHASE; MASE1; PAS fold-4; PAS fold; KEGG: dar:Daro_3990 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAC motif; PAS YP_004511062.1 PFAM: Protein of unknown function DUF58; KEGG: mca:MCA3083 hypothetical protein YP_004511063.1 PFAM: CreA; KEGG: app:CAP2UW1_0671 CreA family protein YP_004511064.1 PFAM: ATPase associated with various cellular activities, AAA-3; KEGG: mca:MCA2741 hypothetical protein YP_004511065.1 KEGG: sse:Ssed_2426 lysine decarboxylase; TIGRFAM: Conserved hypothetical protein CHP00730; PFAM: Conserved hypothetical protein CHP00730 YP_004511066.1 KEGG: mca:MCA2332 dihydroorotase; TIGRFAM: Dihydroorotase multifunctional complex type; PFAM: Amidohydrolase 3 YP_004511067.1 PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; TIGRFAM: Aspartate carbamoyltransferase, eukaryotic; HAMAP: Aspartate carbamoyltransferase; KEGG: mca:MCA2333 aspartate carbamoyltransferase catalytic subunit YP_004511068.1 KEGG: mca:MCA2334 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; PFAM: Phosphoribosyltransferase YP_004511069.1 KEGG: eba:ebA5923 hypothetical protein YP_004511070.1 KEGG: cti:pRALTA_0111 hypothetical protein YP_004511071.1 KEGG: amr:AM1_1038 transposase IS66 YP_004511072.1 PFAM: Integrase, catalytic core; KEGG: ppr:PBPRA2371 transposase YP_004511073.1 PFAM: Transposase IS3/IS911; KEGG: pna:Pnap_1740 transposase YP_004511074.1 KEGG: sus:Acid_6003 transposase IS66 YP_004511075.1 SMART: Resolvase, RNase H-like fold; TIGRFAM: Resolvase, holliday junction-type, YqgF-like; KEGG: mca:MCA2335 hypothetical protein; HAMAP: Holliday junction resolvase; PFAM: Resolvase, holliday junction-type, YqgF-like YP_004511076.1 KEGG: aeh:Mlg_0349 hypothetical protein; HAMAP: Protein of unknown function DUF179; PFAM: Protein of unknown function DUF179 YP_004511077.1 TIGRFAM: TonB, C-terminal; KEGG: mca:MCA2337 TonB-dependent receptor YP_004511078.1 PFAM: Prokaryotic glutathione synthetase, ATP-binding; Prokaryotic glutathione synthetase, N-terminal; TIGRFAM: Glutathione synthetase, prokaryotic; HAMAP: Glutathione synthetase, prokaryotic; KEGG: mca:MCA2338 glutathione synthetase YP_004511079.1 TIGRFAM: Ribosomal protein L28; HAMAP: Ribosomal protein L28; KEGG: tgr:Tgr7_0325 ribosomal protein L28; PFAM: Ribosomal protein L28 YP_004511080.1 TIGRFAM: Ribosomal protein L33; HAMAP: Ribosomal protein L33; KEGG: mca:MCA2340 50S ribosomal protein L33; PFAM: Ribosomal protein L33 YP_004511081.1 KEGG: pmy:Pmen_2946 cyclic nucleotide-binding protein; PFAM: Rhodanese-like; Cyclic nucleotide-binding; SMART: Rhodanese-like; Cyclic nucleotide-binding YP_004511082.1 SMART: PDZ/DHR/GLGF; TIGRFAM: Peptidase S1C, Do; KEGG: mca:MCA2343 protease DO; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF YP_004511083.1 TIGRFAM: PAS; PFAM: GAF; PAS fold; KEGG: slt:Slit_2804 diguanylate cyclase with PAS/PAC sensor; SMART: PAS; PAC motif YP_004511084.1 KEGG: mca:MCA2140 ATP-dependent DNA helicase Rep; TIGRFAM: DNA helicase, ATP-dependent, RepA type; PFAM: DNA helicase, UvrD/REP type YP_004511086.1 PFAM: Peptidase A8, signal peptidase II; TIGRFAM: Peptidase A8, signal peptidase II; HAMAP: Peptidase A8, signal peptidase II; KEGG: mca:MCA2254 signal peptidase II YP_004511087.1 TIGRFAM: Isoleucyl-tRNA synthetase, class Ia; HAMAP: Isoleucyl-tRNA synthetase; KEGG: mca:MCA2253 isoleucyl-tRNA synthetase YP_004511088.1 KEGG: syr:SynRCC307_1985 hypothetical protein YP_004511089.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: mca:MCA2186 short chain dehydrogenase/reductase oxidoreductase YP_004511091.1 KEGG: wch:wcw_0149 hypothetical protein YP_004511092.1 PFAM: Uncharacterised protein family UPF0182; KEGG: mca:MCA2716 hypothetical protein YP_004511093.1 PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2; KEGG: neu:NE0782 periplasmic cell division protein (SufI) YP_004511094.1 PFAM: Multicopper oxidase, type 2; KEGG: mca:MCA2129 multicopper oxidase YP_004511095.1 KEGG: mag:amb2567 exo-beta-1,3-glucanase YP_004511097.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: pfl:PFL_0087 diguanylate cyclase, SMART: Diguanylate cyclase, predicted YP_004511098.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: hch:HCH_00302 response regulator; SMART: Diguanylate cyclase, predicted YP_004511099.1 PFAM: DSBA oxidoreductase; KEGG: mca:MCA2602 thiol:disulfide interchange protein DsbA YP_004511100.1 PFAM: Cytochrome c, class I; KEGG: mca:MCA2603 cytochrome c family protein YP_004511101.1 TIGRFAM: GTP-binding protein, ribosome biogenesis, YsxC; HAMAP: GTP-binding protein, ribosome biogenesis, YsxC; KEGG: aeh:Mlg_2857 cell division checkpoint GTPase YihA; PFAM: GTP-binding protein, HSR1-related YP_004511103.1 SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: hch:HCH_06724 iron-regulated protein YP_004511104.1 KEGG: eba:ebA5197 cytochrome c family protein YP_004511105.1 HAMAP: Coproporphyrinogen-III oxidase, aerobic; KEGG: mca:MCA2791 coproporphyrinogen III oxidase; PFAM: Coproporphyrinogen III oxidase YP_004511106.1 PFAM: Zeta toxin YP_004511107.1 KEGG: pcu:pc0939 hypothetical protein YP_004511108.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold; GAF; KEGG: neu:NE1700 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; GAF; PAS; PAC motif YP_004511109.1 KEGG: rfr:Rfer_1985 beta-lactamase-like YP_004511110.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: rfr:Rfer_1986 metal dependent phosphohydrolase YP_004511111.1 TIGRFAM: DNA polymerase 1; PFAM: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; KEGG: mca:MCA2573 DNA polymerase I; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; 3'-5' exonuclease; DNA-directed DNA polymerase, family A, palm domain YP_004511113.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; Transcriptional regulator, YbiH, C-terminal; KEGG: mms:mma_0049 TetR family transcriptional regulator YP_004511114.1 KEGG: aav:Aave_4662 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004511115.1 KEGG: pna:Pnap_3901 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004511116.1 PFAM: Acriflavin resistance protein; KEGG: pna:Pnap_3902 acriflavin resistance protein YP_004511117.1 PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: bgf:BC1003_3769 procollagen-proline dioxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit YP_004511118.1 manually curated; KEGG: pol:Bpro_1435 hypothetical protein YP_004511119.1 PFAM: Redoxin; KEGG: sde:Sde_1566 hypothetical protein YP_004511120.1 KEGG: alv:Alvin_0147 hypothetical protein YP_004511121.1 KEGG: alv:Alvin_0148 hypothetical protein YP_004511122.1 PFAM: ApbE-like lipoprotein; KEGG: alv:Alvin_0149 ApbE family lipoprotein YP_004511123.1 KEGG: lil:LA_1321 disulfide interchange transmembrane protein; PFAM: Cytochrome c assembly protein, transmembrane region YP_004511124.1 KEGG: shw:Sputw3181_4033 hypothetical protein YP_004511125.1 manually curated; KEGG: mmi:MMAR_3367 hypothetical protein YP_004511126.1 KEGG: mca:MCA0843 sulfite oxidase subunit YedZ; HAMAP: Sulfoxide reductase heme-binding subunit yedZ; PFAM: Ferric reductase-like transmembrane component, N-terminal YP_004511127.1 KEGG: mca:MCA0844 sulfite oxidase subunit YedY; HAMAP: Sulfoxide reductase catalytic subunit yedY; PFAM: Oxidoreductase, molybdopterin binding YP_004511128.1 PFAM: DoxX; KEGG: vha:VIBHAR_00355 NADH dehydrogenase YP_004511129.1 PFAM: Protein of unknown function DUF2063; KEGG: reh:H16_A1820 hypothetical protein YP_004511130.1 KEGG: reh:H16_A1821 hypothetical protein; HAMAP: UPF0276 protein; PFAM: Protein of unknown function DUF692 YP_004511131.1 PFAM: Protein of unknown function DUF2282, transmembrane; KEGG: vsp:VS_3085 hypothetical protein YP_004511132.1 KEGG: bid:Bind_0259 3-carboxymuconate cyclase YP_004511133.1 PFAM: Protein of unknown function DUF2282, transmembrane; KEGG: ppr:PBPRA3515 signal peptide protein YP_004511134.1 TIGRFAM: PAS; PFAM: RNA polymerase sigma factor 54, interaction; GAF; PAS fold-4; KEGG: afw:Anae109_4242 sigma-54 dependent trancsriptional regulator; SMART: ATPase, AAA+ type, core; GAF; PAS YP_004511137.1 KEGG: mmb:Mmol_1761 hypothetical protein YP_004511138.1 KEGG: mca:MCA2720 CzcA family heavy metal efflux protein; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein YP_004511139.1 TIGRFAM: Secretion protein HlyD; KEGG: mca:MCA2719 heavy metal efflux system protein YP_004511140.1 KEGG: mca:MCA2718 hypothetical protein YP_004511142.1 PFAM: Mitochondrial inner membrane translocase complex, subunit Tim44-related; KEGG: dba:Dbac_0303 import inner membrane translocase subunit Tim44 YP_004511143.1 PFAM: Methyltransferase type 11; KEGG: mca:MCA1441 UbiE/COQ5 family methlytransferase YP_004511145.1 PFAM: Spermine synthase; TIGRFAM: Spermine synthase; HAMAP: Spermidine synthase; KEGG: mca:MCA2046 spermidine synthase YP_004511146.1 PFAM: Orn/DAP/Arg decarboxylase 2; TIGRFAM: Arginine decarboxylase; HAMAP: Biosynthetic arginine decarboxylase; KEGG: mca:MCA2047 arginine decarboxylase YP_004511147.1 PFAM: Lipase, GDSL; KEGG: noc:Noc_1154 lipolytic protein YP_004511148.1 KEGG: nwa:Nwat_1020 6-phosphogluconate dehydrogenase NAD-binding protein; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding YP_004511149.1 TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: tgr:Tgr7_2339 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal YP_004511150.1 KEGG: mep:MPQ_2627 hypothetical protein YP_004511151.1 PFAM: Peptidase M10A/M12B, matrixin/adamalysin; KEGG: tbd:Tbd_0803 hypothetical protein YP_004511152.1 TIGRFAM: Methyltransferase FkbM; KEGG: pub:SAR11_0393 SAM-dependent methyltransferase YP_004511153.1 PFAM: Pentapeptide repeat; KEGG: mdi:METDI1246 hypothetical protein YP_004511154.1 TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; HAMAP: 4-hydroxybenzoate octaprenyltransferase; KEGG: mca:MCA1336 4-hydroxybenzoate octaprenyltransferase; PFAM: UbiA prenyltransferase YP_004511155.1 KEGG: bac:BamMC406_0008 hypothetical protein YP_004511156.1 KEGG: bac:BamMC406_0007 AAA ATPase YP_004511157.1 KEGG: bac:BamMC406_0006 cell divisionFtsK/SpoIIIE; PFAM: Cell divisionFtsK/SpoIIIE; SMART: ATPase, AAA+ type, core YP_004511158.1 TIGRFAM: DNA sulphur modification protein DndD; KEGG: bac:BamMC406_0005 hypothetical protein YP_004511160.1 PFAM: Phosphoadenosine phosphosulphate reductase; KEGG: tgr:Tgr7_0620 phosphoadenosine phosphosulfate reductase YP_004511161.1 KEGG: nhl:Nhal_0606 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004511162.1 PFAM: Plasmid stabilisation system; KEGG: nhl:Nhal_1127 plasmid stabilization system YP_004511163.1 TIGRFAM: RfaE bifunctional protein, domain I; RfaE bifunctional protein, domain II; Cytidyltransferase-related; HAMAP: Bifunctional protein hldE; KEGG: mca:MCA1736 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; PFAM: Carbohydrate/purine kinase; Cytidylyltransferase YP_004511164.1 KEGG: maq:Maqu_0914 arsenate reductase; TIGRFAM: Arsenate reductase; PFAM: Arsenate reductase-like YP_004511165.1 KEGG: cti:RALTA_A1221 TRP repressor binding protein WrbA; TIGRFAM: Flavoprotein WrbA; PFAM: Flavodoxin/nitric oxide synthase YP_004511166.1 TIGRFAM: Methyltransferase FkbM; KEGG: cyn:Cyan7425_0541 methyltransferase FkbM family YP_004511167.1 PFAM: Glycosyl transferase, family 11; KEGG: mpl:Mpal_2194 glycosyl transferase 11 YP_004511168.1 PFAM: Glycosyl transferase, family 2; KEGG: cyn:Cyan7425_2255 glycosyl transferase 2 YP_004511169.1 KEGG: reu:Reut_A0772 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat YP_004511170.1 KEGG: rhi:NGR_c02320 conserved hypothetical protein, contains ice nucleation protein domain YP_004511171.1 PFAM: Protein of unknown function DUF2279, periplasmic lipoprotein; KEGG: nmu:Nmul_A2261 hypothetical protein YP_004511172.1 PFAM: Protein of unknown function DUF882, bacterial; KEGG: aeh:Mlg_1034 hypothetical protein YP_004511173.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: phytanoyl-CoA dioxygenase YP_004511174.1 KEGG: nde:NIDE3840 hypothetical protein YP_004511175.1 KEGG: tgr:Tgr7_0690 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004511176.1 KEGG: mca:MCA1366 hypothetical protein YP_004511177.1 PFAM: UspA; KEGG: nmu:Nmul_A1974 hypothetical protein YP_004511178.1 KEGG: mca:MCA0462 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; PFAM: Cobinamide kinase/cobinamide phosphate guanyltransferase YP_004511179.1 PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like, core; TIGRFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, core, prokaryotic; HAMAP: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, core, prokaryotic; KEGG: pfs:PFLU4483 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_004511180.1 KEGG: nwa:Nwat_1612 CzcA family heavy metal efflux pump; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein YP_004511181.1 KEGG: nhl:Nhal_1688 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004511182.1 PFAM: Outer membrane efflux protein; KEGG: noc:Noc_1528 outer membrane efflux protein YP_004511183.1 KEGG: dev:DhcVS_204 hypothetical protein YP_004511184.1 TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; HAMAP: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; KEGG: psp:PSPPH_3693 cobalamin synthase; PFAM: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase YP_004511185.1 KEGG: bte:BTH_I1401 nitroreductase; TIGRFAM: Cob(II)yrinic acid a,c-diamide reductase; PFAM: Nitroreductase-like YP_004511186.1 TIGRFAM: Cobyric acid synthase CobQ; HAMAP: Cobyric acid synthase CobQ; KEGG: psa:PST_1297 cobyric acid synthase; PFAM: CobB/CobQ-like glutamine amidotransferase; Cobyrinic acid a,c-diamide synthase YP_004511187.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; NMT1/THI5 like; Extracellular solute-binding protein, family 3; PAS fold-3; PAS fold; KEGG: gca:Galf_1869 diguanylate cyclase with PAS/PAC sensor; SMART: Diguanylate cyclase, predicted; Extracellular solute-binding protein, family 3; PAS; PAC motif YP_004511188.1 KEGG: maq:Maqu_0293 hypothetical protein YP_004511189.1 PFAM: Adenylate cyclase; KEGG: tgr:Tgr7_1910 adenylate cyclase YP_004511190.1 PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal; KEGG: mca:MCA2458 superoxide dismutase, Fe YP_004511191.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: mmb:Mmol_0022 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004511194.1 KEGG: nde:NIDE2008 outer membrane autotransporter; TIGRFAM: Outer membrane autotransporter barrel; PFAM: Autotransporter beta-domain YP_004511195.1 TIGRFAM: Peptidase A31, hydrogen uptake protein; KEGG: mca:MCA0113 HoxW protein YP_004511196.1 KEGG: mca:MCA0114 NAD-reducing hydrogenase, beta subunit; PFAM: Nickel-dependent hydrogenase, large subunit YP_004511197.1 KEGG: mca:MCA2726 NAD-reducing hydrogenase, delta subunit; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit YP_004511198.1 KEGG: mca:MCA2725 NAD-reducing hydrogenase, gamma subunit; PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Ferredoxin YP_004511199.1 KEGG: mca:MCA2724 NAD-reducing hydrogenase, alpha subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; NADH:ubiquinone oxidoreductase, 24kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding YP_004511200.1 PFAM: Protein of unknown function DUF721; KEGG: mca:MCA2421 hypothetical protein YP_004511201.1 TIGRFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; HAMAP: UDP-3-O-acyl N-acetylglucosamine deacetylase; KEGG: mca:MCA2422 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; PFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase YP_004511202.1 KEGG: mca:MCA2423 cell division protein FtsZ; TIGRFAM: Cell division protein FtsZ, N-terminal; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain YP_004511203.1 KEGG: mca:MCA2424 cell division protein FtsA; TIGRFAM: Cell division protein family FtsA; PFAM: Cell division protein FtsA domain YP_004511204.1 PFAM: Cell division protein FtsQ; Polypeptide-transport-associated, FtsQ-type; KEGG: pag:PLES_47881 cell division protein FtsQ YP_004511205.1 PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal; TIGRFAM: D-alanine--D-alanine ligase; HAMAP: D-alanine--D-alanine ligase; KEGG: mca:MCA2426 D-alanine--D-alanine ligase YP_004511206.1 PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase, N-terminal; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: mca:MCA2427 UDP-N-acetylenolpyruvoylglucosamine reductase YP_004511207.1 PFAM: Mur ligase, N-terminal; Mur ligase, central; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramate-alanine ligase; HAMAP: UDP-N-acetylmuramate-alanine ligase; KEGG: mca:MCA2428 UDP-N-acetylmuramate--alanine ligase YP_004511208.1 TIGRFAM: N-acetylglucosaminyltransferase, MurG; HAMAP: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; KEGG: mca:MCA2429 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; PFAM: Glycosyl transferase, family 28; Glycosyl transferase, family 28, C-terminal YP_004511209.1 KEGG: mca:MCA2430 cell division protein FtsW; TIGRFAM: Cell division protein FtsW; PFAM: Cell cycle protein YP_004511210.1 TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; HAMAP: UDP-N-acetylmuramoylalanine-D-glutamate ligase; KEGG: mca:MCA2431 UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: Mur ligase, central; Mur ligase, C-terminal YP_004511211.1 TIGRFAM: Phospho-N-acetylmuramoyl-pentapeptide transferase; HAMAP: Phospho-N-acetylmuramoyl-pentapeptide transferase; KEGG: mca:MCA2432 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site YP_004511212.1 TIGRFAM: UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase; KEGG: nhl:Nhal_0486 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D -alanyl ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal YP_004511213.1 PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; HAMAP: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; KEGG: mca:MCA2433 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_004511214.1 KEGG: mca:MCA2434 penicillin-binding protein 3; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain YP_004511215.1 KEGG: mca:MCA2435 cell division protein FtsL, TIGRFAM: Cell division protein, FtsL -like; PFAM: Cell division protein FtsL YP_004511216.1 TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; KEGG: amc:MADE_03266 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW YP_004511217.1 TIGRFAM: MraZ; HAMAP: MraZ; KEGG: mca:MCA2437 cell division protein MraZ; PFAM: MraZ domain YP_004511219.1 KEGG: cps:CPS_4387 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; HAMAP: Glycerol-3-phosphate dehydrogenase [NAD(P)+]; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal; NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal YP_004511220.1 TIGRFAM: Bacterial protein export chaperone SecB; HAMAP: Bacterial protein export chaperone SecB; KEGG: mca:MCA2537 preprotein translocase subunit SecB; PFAM: Bacterial protein export chaperone SecB YP_004511221.1 KEGG: mca:MCA2536 rhodanese domain-containing protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_004511222.1 KEGG: tkm:TK90_2022 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004511223.1 PFAM: Peptidase M23; KEGG: mca:MCA2534 peptidase M23/M37 domain-containing protein YP_004511224.1 TIGRFAM: Peptidase S41A, C-terminal protease; PFAM: Peptidase S41; PDZ/DHR/GLGF; KEGG: mca:MCA2533 carboxyl-terminal protease; SMART: Peptidase S41; PDZ/DHR/GLGF YP_004511225.1 PFAM: Uncharacterised conserved protein UCP030820; KEGG: mca:MCA2060 hypothetical protein YP_004511226.1 PFAM: Nitrite/sulphite reductase 4Fe-4S region; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; KEGG: mca:MCA2059 nitrite/sulfite reductase YP_004511227.1 PFAM: Divalent ion symporter; KEGG: mca:MCA2058 transporter YP_004511228.1 PFAM: Major facilitator superfamily MFS-1; KEGG: maq:Maqu_2584 major facilitator superfamily transporter YP_004511229.1 PFAM: Ribosomal protein L31; manually curated; TIGRFAM: Ribosomal protein L31; KEGG: nmu:Nmul_A2086 50S ribosomal protein L31; HAMAP: 50S ribosomal protein L31 YP_004511230.1 KEGG: noc:Noc_0246 penicillin-binding protein 1A; TIGRFAM: Penicillin-binding protein 1A; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase YP_004511231.1 TIGRFAM: Type IV pilus assembly protein PilM; KEGG: nwa:Nwat_0345 type IV pilus assembly protein PilM YP_004511232.1 PFAM: Fimbrial assembly; KEGG: alv:Alvin_3055 fimbrial assembly family protein YP_004511233.1 PFAM: Pilus assembly protein, PilO; KEGG: mca:MCA0327 type 4 fimbrial biogenesis protein PilO YP_004511234.1 PFAM: Pilus assembly protein PilP; KEGG: mca:MCA0328 type 4 fimbrial biogenesis protein PilP YP_004511235.1 KEGG: alv:Alvin_3058 type IV pilus secretin PilQ; TIGRFAM: Type IV pilus secretin PilQ; PFAM: Type II/III secretion system; Secretin/TonB, short N-terminal; NolW-like YP_004511236.1 TIGRFAM: Mg chelatase-related protein; PFAM: Magnesium chelatase, ChlI subunit; KEGG: mca:MCA2139 Mg chelatase-related protein; SMART: ATPase, AAA+ type, core YP_004511237.1 PFAM: Protein of unknown function DUF526; KEGG: amc:MADE_00075 hypothetical protein YP_004511238.1 KEGG: nhl:Nhal_2066 regulatory protein MarR; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004511239.1 PFAM: ATPase associated with various cellular activities, AAA-3; KEGG: mca:MCA0468 MoxR protein YP_004511240.1 KEGG: mca:MCA0467 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF58 YP_004511241.1 KEGG: mca:MCA0466 transglutaminase; PFAM: Transglutaminase-like; SMART: Transglutaminase-like YP_004511243.1 KEGG: mca:MCA3112 SPFH domain-containing protein/band 7 family protein; PFAM: Band 7 protein; SMART: Band 7 protein YP_004511244.1 PFAM: Nodulation efficiency, NfeD; KEGG: mca:MCA3111 hypothetical protein YP_004511245.1 KEGG: pap:PSPA7_5497 DNA-binding response regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004511246.1 KEGG: gca:Galf_0851 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004511247.1 KEGG: mca:MCA2169 BNR repeat-containing protein YP_004511248.1 PFAM: Copper resistance protein CopC, core; KEGG: mca:MCA2170 copper resistance protein YP_004511249.1 KEGG: nhl:Nhal_3789 hypothetical protein YP_004511250.1 KEGG: msv:Mesil_2537 hypothetical protein YP_004511252.1 KEGG: mca:MCA2855 ammonia monooxygenase/methane monooxygenase, subunit C family protein; TIGRFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit C; PFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit C YP_004511253.1 KEGG: mca:MCA2854 methane monooxygenase, A subunit; TIGRFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit A; PFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit A YP_004511254.1 KEGG: mca:MCA2853 methane monooxygenase, B subunit; TIGRFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit B; PFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit B YP_004511255.1 KEGG: mca:MCA1881 hypothetical protein YP_004511256.1 KEGG: net:Neut_0861 citrate synthase I; TIGRFAM: Citrate synthase, type II; PFAM: Citrate synthase-like YP_004511257.1 PFAM: Late competence development protein ComFB; KEGG: alv:Alvin_2945 late competence development protein ComFB YP_004511258.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: nhl:Nhal_3357 protein of unknown function DUF214 YP_004511259.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: slt:Slit_2078 protein of unknown function DUF214 YP_004511260.1 KEGG: mca:MCA1824 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF6, transmembrane YP_004511261.1 KEGG: gca:Galf_0178 hypothetical protein YP_004511262.1 KEGG: mca:MCA0041 Gfo/Idh/MocA family oxidoreductase; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal YP_004511263.1 KEGG: kko:Kkor_0246 hypothetical protein YP_004511264.1 KEGG: cpb:Cphamn1_1470 hypothetical protein YP_004511265.1 PFAM: Uncharacterised conserved protein UCP025560; KEGG: ppr:PBPRB0969 hypothetical protein YP_004511267.1 PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; KEGG: glo:Glov_2457 type II secretion system protein E YP_004511268.1 TIGRFAM: HDIG; PFAM: Metal-dependent hydrolase HDOD; KEGG: signal transduction protein; SMART: Metal-dependent phosphohydrolase, HD region YP_004511269.1 PFAM: RNA-directed DNA polymerase (reverse transcriptase); KEGG: hmo:HM1_3100 reverse transcriptase (RNA-dependent DNA polymerase) YP_004511270.1 PFAM: Integrase, catalytic core; KEGG: ppr:PBPRB1144 transposase YP_004511271.1 KEGG: pna:Pnap_1740 transposase YP_004511272.1 PFAM: Integrase, catalytic core; KEGG: ppr:PBPRB1144 transposase YP_004511273.1 KEGG: bpt:Bpet3736 transposase YP_004511274.1 KEGG: vex:VEA_003187 hypothetical protein YP_004511275.1 PFAM: Ankyrin repeat; KEGG: mca:MCA2117 rhodanese-like domain/ankyrin repeat-containing protein YP_004511276.1 KEGG: ttu:TERTU_4003 hypothetical protein YP_004511277.1 PFAM: LRV FeS4 cluster; Leucine rich repeat variant; KEGG: avn:Avin_01440 nitrogen fixing leucine rich variant repeat 4Fe-4S cluster protein YP_004511278.1 KEGG: azo:azo0014 flavodoxin FldA; TIGRFAM: Flavodoxin, long chain; PFAM: Flavodoxin/nitric oxide synthase YP_004511279.1 KEGG: hypothetical protein YP_004511280.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: monooxygenase FAD-binding protein YP_004511281.1 KEGG: azo:azo2838 hypothetical protein YP_004511282.1 KEGG: rsc:RCFBP_21058 hypothetical protein YP_004511283.1 KEGG: tkm:TK90_0475 beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase, C-terminal; Beta-ketoacyl synthase, N-terminal YP_004511284.1 KEGG: hypothetical xanthomonadin exporter protein YP_004511285.1 KEGG: reh:H16_B1664 fatty acyl CoA synthetase YP_004511286.1 KEGG: smt:Smal_3921 hypothetical protein YP_004511287.1 KEGG: rpf:Rpic12D_0322 acyl carrier protein YP_004511288.1 KEGG: mlo:mlr2550 hypothetical protein YP_004511289.1 PFAM: Phosphopantetheine-binding; KEGG: tgr:Tgr7_2385 hypothetical protein YP_004511290.1 KEGG: scl:sce6182 hypothetical protein YP_004511291.1 KEGG: pag:PLES_25871 acyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase YP_004511292.1 KEGG: dar:Daro_2941 hypothetical protein; PFAM: MTH538 TIR-like domain; SMART: Toll-Interleukin receptor YP_004511293.1 KEGG: brh:RBRH_03863 isovaleryl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal YP_004511294.1 KEGG: fpl:Ferp_0792 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_004511295.1 PFAM: Uncharacterised protein family UPF0118; KEGG: pst:PSPTO_2221 lipoprotein YP_004511296.1 KEGG: tbd:Tbd_2715 threonine-phosphate decarboxylase; TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: Aminotransferase, class I/II YP_004511297.1 TIGRFAM: Cobalamin (vitamin B12) biosynthesis CbiB; HAMAP: Cobalamin biosynthesis protein cbiB; KEGG: mfa:Mfla_0102 cobalamin biosynthesis protein; PFAM: Cobalamin (vitamin B12) biosynthesis CbiB YP_004511298.1 KEGG: gca:Galf_0313 hypothetical protein YP_004511299.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: neu:NE0636 TonB-dependent receptor protein YP_004511300.1 KEGG: tmz:Tmz1t_0820 flagellar assembly protein FliW; HAMAP: Flagellar assembly factor FliW; PFAM: Flagellar assembly factor FliW YP_004511301.1 PFAM: Aspartate decarboxylase; TIGRFAM: Aspartate decarboxylase; HAMAP: Aspartate decarboxylase; KEGG: mca:MCA2316 aspartate alpha-decarboxylase YP_004511302.1 TIGRFAM: Pantoate-beta-alanine ligase; Cytidyltransferase-related; HAMAP: Pantoate-beta-alanine ligase; KEGG: psa:PST_3297 pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase YP_004511303.1 PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: Ketopantoate hydroxymethyltransferase; HAMAP: Ketopantoate hydroxymethyltransferase; KEGG: nhl:Nhal_1072 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_004511304.1 TIGRFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: tgr:Tgr7_0881 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase; PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YP_004511305.1 TIGRFAM: Poly(A) polymerase, PcnB; KEGG: mca:MCA2312 polyA polymerase; PFAM: Polynucleotide adenylyltransferase region YP_004511307.1 KEGG: nwa:Nwat_1709 RDD domain-containing protein; manually curated; PFAM: RDD YP_004511308.1 KEGG: mca:MCA1546 hypothetical protein YP_004511309.1 TIGRFAM: hypothetical protein; KEGG: cyc:PCC7424_3022 hypothetical protein YP_004511310.1 KEGG: mfa:Mfla_2213 hypothetical protein YP_004511311.1 KEGG: bmd:BMD_3816 hypothetical protein YP_004511312.1 KEGG: nhl:Nhal_0005 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004511313.1 KEGG: mca:MCA2972 lipoprotein A domain-containing protein; TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Rare lipoprotein A YP_004511314.1 TIGRFAM: Diaminopimelate decarboxylase; KEGG: mca:MCA0858 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2 YP_004511315.1 PFAM: Diaminopimelate epimerase; manually curated; TIGRFAM: Diaminopimelate epimerase; KEGG: mca:MCA0859 diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase YP_004511316.1 PFAM: Protein of unknown function DUF484; KEGG: mca:MCA0860 hypothetical protein YP_004511317.1 TIGRFAM: Tyrosine recombinase XerC; HAMAP: Tyrosine recombinase xerC; KEGG: hch:HCH_00300 site-specific tyrosine recombinase XerC; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage YP_004511318.1 PFAM: Integrase, catalytic core; KEGG: hna:Hneap_1227 integrase catalytic region YP_004511319.1 PFAM: Transposase IS3/IS911; KEGG: pna:Pnap_1740 transposase YP_004511320.1 PFAM: Integrase, catalytic core; KEGG: ppr:PBPRB1144 transposase YP_004511321.1 PFAM: Transposase, IS4-like; KEGG: xbo:XBJ1_1885 transposase YP_004511322.1 KEGG: ter:Tery_1084 phosphoglucomutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal YP_004511323.1 PFAM: YkuD domain; KEGG: mca:MCA0606 hypothetical protein YP_004511324.1 manually curated; KEGG: mca:MCA0605 lipoprotein YP_004511325.1 PFAM: YkuD domain; KEGG: mca:MCA0855 ErfK/YbiS/YcfS/YnhG family protein YP_004511326.1 KEGG: mca:MCA0854 recombination associated protein; HAMAP: Recombination-associated protein rdgC; PFAM: exonuclease, RdgC YP_004511327.1 KEGG: nwa:Nwat_2272 hypothetical protein YP_004511328.1 PFAM: Uncharacterised protein family UPF0307; KEGG: ttu:TERTU_3827 hypothetical protein YP_004511329.1 PFAM: Glycosyl transferase, family 51; manually curated; TIGRFAM: Monofunctional biosynthetic peptidoglycan transglycosylase; KEGG: pap:PSPA7_0477 monofunctional biosynthetic peptidoglycan transglycosylase; HAMAP: Monofunctional biosynthetic peptidoglycan transglycosylase YP_004511330.1 PFAM: Peptidase M74, penicillin-insensitive murein endopeptidase; KEGG: oan:Oant_1334 penicillin-insensitive murein endopeptidase YP_004511331.1 PFAM: Protein of unknown function DUF1289; KEGG: saz:Sama_2102 hypothetical protein YP_004511332.1 TIGRFAM: Riboflavin kinase/FAD synthetase; KEGG: vha:VIBHAR_00979 bifunctional riboflavin kinase/FMN adenylyltransferase; PFAM: FAD synthetase; Riboflavin kinase YP_004511333.1 KEGG: wch:wcw_0148 DNA repair photolyase YP_004511334.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: wch:wcw_0147 hypothetical protein YP_004511335.1 PFAM: Regulator of K+ conductance, N-terminal; Ion transport 2; KEGG: sdl:Sdel_2168 TrkA-N domain protein YP_004511336.1 PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: sdl:Sdel_2167 TrkA-N domain protein YP_004511337.1 manually curated; HAMAP: Disulfide bond formation protein B; KEGG: mca:MCA3059 disulfide bond formation protein B; PFAM: Disulphide bond formation protein DsbB YP_004511338.1 TIGRFAM: Primosomal protein n; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; KEGG: mca:MCA2594 primosomal protein N`; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004511339.1 KEGG: mbr:MONBRDRAFT_32645 hypothetical protein YP_004511340.1 PFAM: NLP/P60; KEGG: mca:MCA2789 NLP/P60 family protein YP_004511341.1 HAMAP: DNA polymerase IV; KEGG: aeh:Mlg_2775 DNA-directed DNA polymerase; PFAM: DNA-repair protein, UmuC-like YP_004511342.1 KEGG: neu:NE0570 lipase YP_004511343.1 PFAM: Uncharacterised conserved protein UCP029693; KEGG: mca:MCA0862 hypothetical protein YP_004511344.1 KEGG: tkm:TK90_0203 protein of unknown function DUF709; HAMAP: YcgL domain; PFAM: YcgL domain YP_004511345.1 PFAM: Abortive infection protein; KEGG: nhl:Nhal_0881 abortive infection protein YP_004511347.1 SMART: Cystathionine beta-synthase, core; TIGRFAM: IMP dehydrogenase; KEGG: mca:MCA0291 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core YP_004511348.1 PFAM: Methyltransferase type 11; KEGG: mpo:Mpop_1471 methyltransferase type 11 YP_004511349.1 PFAM: GMP synthase, C-terminal; Glutamine amidotransferase class-I, C-terminal; NAD+ synthase; TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; HAMAP: GMP synthase [glutamine-hydrolyzing]; KEGG: tgr:Tgr7_1036 GMP synthase YP_004511350.1 KEGG: swo:Swol_1551 hypothetical protein; TIGRFAM: Addiction module component, CHP02574; PFAM: Addiction module component, CHP02574 YP_004511351.1 PFAM: Plasmid stabilisation system; KEGG: pph:Ppha_1705 plasmid stabilization system YP_004511352.1 TIGRFAM: A/G-specific adenine glycosylase MutY, bacterial form; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; KEGG: cja:CJA_0530 A / G specific adenine glycosylase; SMART: HhH-GPD domain YP_004511353.1 KEGG: mca:MCA0856 hypothetical protein; HAMAP: Fe(II) trafficking protein YggX; PFAM: Fe(II) trafficking protein YggX YP_004511355.1 PFAM: Glycosyl transferase, group 1; KEGG: mca:MCA1168 colanic acid biosynthesis glycosyl transferase YP_004511356.1 PFAM: Glycosyl transferase, group 1; KEGG: caa:Caka_1988 glycosyl transferase group 1 YP_004511357.1 KEGG: pph:Ppha_0561 acetyltransferase YP_004511358.1 PFAM: Glycosyl transferase, group 1; KEGG: sua:Saut_1559 glycosyl transferase group 1 YP_004511359.1 PFAM: Polysaccharide biosynthesis protein; KEGG: gdj:Gdia_0777 polysaccharide biosynthesis protein YP_004511360.1 KEGG: cpy:Cphy_1208 O-antigen polymerase YP_004511361.1 KEGG: cyc:PCC7424_0611 exopolysaccharide biosynthesis protein-like protein YP_004511362.1 KEGG: aap:NT05HA_0643 hypothetical protein YP_004511363.1 KEGG: rpe:RPE_1095 eight transmembrane protein EpsH; TIGRFAM: Methanolan biosynthesis EpsI; Exosortase, EpsH; PFAM: Exosortase EpsH-related YP_004511364.1 PFAM: Glycosyl transferase, family 4, conserved region; KEGG: nde:NIDE2404 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase YP_004511365.1 TIGRFAM: Orotidine 5'-phosphate decarboxylase, subfamily 1, core; KEGG: mca:MCA1094 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase, core YP_004511366.1 HAMAP: Shikimate kinase; KEGG: mca:MCA0330 shikimate kinase; PFAM: Shikimate kinase YP_004511367.1 PFAM: 3-dehydroquinate synthase AroB; TIGRFAM: 3-dehydroquinate synthase AroB, subgroup; HAMAP: 3-dehydroquinate synthase; KEGG: mca:MCA0331 3-dehydroquinate synthase YP_004511368.1 KEGG: pmy:Pmen_0549 sporulation domain-containing protein; PFAM: Sporulation/cell division region, bacteria; SMART: ATPase, AAA+ type, core YP_004511369.1 PFAM: Uroporphyrinogen decarboxylase (URO-D); TIGRFAM: Uroporphyrinogen decarboxylase HemE; HAMAP: Uroporphyrinogen decarboxylase HemE; KEGG: mca:MCA0332 uroporphyrinogen decarboxylase YP_004511371.1 KEGG: mms:mma_1233 ECF subfamily RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004511372.1 PFAM: FecR protein; KEGG: mms:mma_1214 Fe2+-dicitrate sensor, membrane component YP_004511373.1 PFAM: PemK-like protein; KEGG: gur:Gura_1479 transcriptional modulator of MazE/toxin, MazF YP_004511374.1 PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: gur:Gura_1478 transcriptional regulator/antitoxin, MazE YP_004511376.1 KEGG: neu:NE0546 TonB-dependent receptor protein; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal YP_004511377.1 KEGG: lch:Lcho_4144 transposase IS3/IS911 family protein; manually curated; PFAM: Transposase IS3/IS911 YP_004511378.1 KEGG: ppd:Ppro_1855 hypothetical protein YP_004511379.1 KEGG: dar:Daro_1832 sigma-70 region 2; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004511380.1 KEGG: gpb:HDN1F_07120 hypothetical protein YP_004511382.1 KEGG: cak:Caul_1086 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004511383.1 KEGG: noc:Noc_1827 hydrophobe/amphiphile efflux-1 HAE1; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004511384.1 KEGG: nwa:Nwat_1286 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004511385.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pmy:Pmen_3352 TetR family transcriptional regulator YP_004511387.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: slt:Slit_0543 OmpA/MotB domain protein YP_004511388.1 KEGG: hse:Hsero_2986 flagellar motor component protein; TIGRFAM: flagellar motor stator protein MotA; PFAM: MotA/TolQ/ExbB proton channel YP_004511389.1 TIGRFAM: Hopanoid biosynthesis associated RND transporter like protein HpnN; KEGG: nmu:Nmul_A1652 hypothetical protein YP_004511390.1 KEGG: CACA family Na+/Ca+ antiporter; TIGRFAM: K+-dependent Na+/Ca+ exchanger-like; PFAM: Sodium/calcium exchanger membrane region YP_004511391.1 TIGRFAM: Bacitracin resistance protein BacA; HAMAP: Undecaprenyl-diphosphatase; KEGG: dar:Daro_3911 undecaprenyl pyrophosphate phosphatase; PFAM: Bacitracin resistance protein BacA YP_004511392.1 PFAM: PEP-CTERM bacterial; KEGG: tmz:Tmz1t_2669 protein of unknown function DUF1555 YP_004511393.1 PFAM: Dockerin type 1; Thrombospondin, type 3-like repeat; KEGG: aba:Acid345_4639 hypothetical protein YP_004511394.1 TIGRFAM: variant PEP-CTERM exosortase signal; PFAM: PEP-CTERM bacterial YP_004511395.1 HAMAP: Phosphoglucose isomerase (PGI); KEGG: cts:Ctha_1613 glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase (PGI) YP_004511396.1 KEGG: mca:MCA2130 hypothetical protein YP_004511397.1 PFAM: Multicopper oxidase, type 2; KEGG: mca:MCA2128 hypothetical protein YP_004511398.1 KEGG: mca:MCA0636 hypothetical protein YP_004511399.1 KEGG: nmu:Nmul_A2658 hypothetical protein YP_004511400.1 TIGRFAM: Valyl-tRNA synthetase, class Ia; HAMAP: Valyl-tRNA synthetase; KEGG: alv:Alvin_2106 valyl-tRNA synthetase YP_004511401.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: alv:Alvin_2068 signal transduction protein YP_004511402.1 KEGG: dar:Daro_0555 response regulator receiver; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004511403.1 KEGG: nhl:Nhal_3847 type IV-A pilus assembly ATPase PilB; TIGRFAM: ATPase, type IV, pilus assembly, PilB; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal YP_004511404.1 PFAM: Type II secretion system F domain; KEGG: mca:MCA2095 type IV pilin biogenesis protein PilC YP_004511405.1 KEGG: nhl:Nhal_3849 prepilin peptidase; PFAM: Peptidase A24A, N-terminal; Peptidase A24A, prepilin type IV YP_004511406.1 manually curated; KEGG: etr:ETAE_0650 dephospho-CoA kinase; TIGRFAM: Dephospho-CoA kinase; HAMAP: Dephospho-CoA kinase YP_004511407.1 PFAM: Protein of unknown function DUF1342; KEGG: mca:MCA2091 hypothetical protein YP_004511408.1 KEGG: sbl:Sbal_3924 hypothetical protein; HAMAP: Uncharacterised protein family, zinc-binding; PFAM: Uncharacterised protein family, zinc-binding YP_004511409.1 KEGG: pfo:Pfl01_4425 hypothetical protein; TIGRFAM: Mutator MutT protein; PFAM: Thiamine monophosphate synthase; NUDIX hydrolase domain YP_004511410.1 PFAM: Arginine biosynthesis protein ArgJ; TIGRFAM: Arginine biosynthesis protein ArgJ; HAMAP: Arginine biosynthesis protein ArgJ; KEGG: maq:Maqu_2442 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase YP_004511411.1 PFAM: SirA-like; KEGG: abo:ABO_2263 hypothetical protein YP_004511412.1 KEGG: kko:Kkor_2282 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase YP_004511413.1 TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E; KEGG: noc:Noc_1361 pilus retraction protein PilT; SMART: ATPase, AAA+ type, core YP_004511414.1 TIGRFAM: Fructose-bisphosphate aldolase, class II, Calvin cycle subtype; Ketose-bisphosphate aldolase, class-II; KEGG: lhk:LHK_00043 fructose-1,6-bisphosphate aldolase; PFAM: Ketose-bisphosphate aldolase, class-II YP_004511416.1 KEGG: pag:PLES_12181 hypothetical protein YP_004511418.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: app:CAP2UW1_0594 TonB-dependent receptor YP_004511420.1 KEGG: bmr:BMI_II54 threonine aldolase, low-specificity; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase YP_004511421.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold; Extracellular ligand-binding receptor; BLUF; KEGG: alv:Alvin_1044 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; PAC motif YP_004511422.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: slt:Slit_2539 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004511423.1 PFAM: Protein of unknown function DUF45; KEGG: mca:MCA0402 hypothetical protein YP_004511424.1 PFAM: Globin, truncated bacterial-like; KEGG: mca:MCA1878 hypothetical protein YP_004511425.1 PFAM: Uncharacterised protein family UPF0005; KEGG: azo:azo0911 carrier/transport protein YP_004511426.1 KEGG: mca:MCA0747 rare lipoprotein A, TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Rare lipoprotein A YP_004511427.1 PFAM: Invasion gene expression up-regulator, SirB; KEGG: ilo:IL0922 hypothetical protein YP_004511428.1 KEGG: dat:HRM2_33280 TRAP-type C4-dicarboxylate transport system, large permease component; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_004511429.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: abo:ABO_0689 TRAP C4-dicarboxylate transporter YP_004511430.1 PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: slt:Slit_0817 extracellular solute-binding protein, family 7 YP_004511431.1 KEGG: slt:Slit_0818 hypothetical protein YP_004511432.1 KEGG: nhl:Nhal_0744 protein of unknown function DUF344; TIGRFAM: polyphosphate:AMP phosphotransferase; PFAM: Polyphosphate kinase 2 YP_004511434.1 KEGG: mca:MCA1032 S1 RNA-binding domain-containing protein; PFAM: Tex-like protein, N-terminal; Ribosomal protein S1, RNA binding domain; SMART: Resolvase, RNase H-like fold YP_004511435.1 KEGG: mca:MCA2460 hypothetical protein YP_004511436.1 PFAM: RecF/RecN/SMC protein, N-terminal; KEGG: ddd:Dda3937_01937 exonuclease, dsDNA, ATP-dependent YP_004511437.1 PFAM: Amidohydrolase 1; KEGG: nmu:Nmul_A0963 amidohydrolase YP_004511438.1 PFAM: ATPase, F1 complex, gamma subunit; KEGG: nhl:Nhal_1904 alternate F1F0 ATPase, F1 subunit gamma YP_004511439.1 TIGRFAM: Alternate ATPase, F1 complex, alpha subunit; ATPase, F1 complex, alpha subunit; HAMAP: ATPase, F1 complex, alpha subunit; KEGG: nhl:Nhal_1905 alternate F1F0 ATPase, F1 subunit alpha; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal YP_004511440.1 TIGRFAM: ATPase, F0 complex, subunit B, bacterial; HAMAP: ATP synthase subunit b; KEGG: nhl:Nhal_1906 alternate F1F0 ATPase, F0 subunit B; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast YP_004511441.1 TIGRFAM: Alternate ATPase, F0 complex, subunit C; ATPase, F0 complex, subunit C, bacterial/chloroplast; HAMAP: ATPase, F0 complex, subunit C; KEGG: nhl:Nhal_1907 alternate F1F0 ATPase, F0 subunit C; PFAM: ATPase, F0/V0 complex, subunit C YP_004511442.1 TIGRFAM: Alternate ATPase, F0 complex, subunit A; ATPase, F0 complex, subunit A; HAMAP: ATP synthase subunit a; KEGG: nhl:Nhal_1908 alternate F1F0 ATPase, F0 subunit A; PFAM: ATPase, F0 complex, subunit A YP_004511443.1 TIGRFAM: ATPase, F1/F0 complex, subunit 2, Methanosarcina type; KEGG: nhl:Nhal_2230 F1/F0 ATPase, Methanosarcina type, subunit 2 YP_004511444.1 KEGG: pna:Pnap_2334 F0F1-ATPase subunit, TIGRFAM: F0F1-ATPase subunit, PFAM: F0F1-ATPase subunit YP_004511445.1 KEGG: nhl:Nhal_1950 ATP synthase F1, epsilon subunit; TIGRFAM: alternate F1F0 ATPase, F1 subunit epsilon; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal YP_004511446.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Alternate ATPase, F1 complex, beta subunit; ATPase, F1 complex, beta subunit; KEGG: syp:SYNPCC7002_G0144 F0F1 ATP synthase subunit beta; HAMAP: ATPase, F1 complex, beta subunit; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal YP_004511447.1 PFAM: Transaldolase; KEGG: vpa:VPA1569 fructose-6-phosphate aldolase YP_004511448.1 KEGG: nhl:Nhal_2920 hypothetical protein YP_004511451.1 KEGG: alv:Alvin_0399 polysaccharide biosynthesis protein YP_004511452.1 TIGRFAM: tRNA (guanine-N-7) methyltransferase; HAMAP: tRNA (guanine-N(7)-)-methyltransferase; KEGG: mca:MCA1532 tRNA (guanine-N(7)-)-methyltransferase; PFAM: tRNA (guanine-N-7) methyltransferase YP_004511454.1 PFAM: BFD-like [2Fe-2S]-binding region; KEGG: mep:MPQ_0404 bfd domain protein (2Fe-2S)-binding domain protein YP_004511455.1 TIGRFAM: ThiS, thiamine-biosynthesis; HAMAP: Thiazole biosynthesis; KEGG: mca:MCA1077 bifunctional sulfur carrier protein/thiazole synthase; PFAM: Thiazole biosynthesis; ThiamineS YP_004511456.1 TIGRFAM: DHAP synthase, class 1; KEGG: mca:MCA1076 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_004511457.1 PFAM: Protein of unknown function DUF155; KEGG: gpb:HDN1F_14140 hypothetical protein YP_004511458.1 PFAM: Cytochrome c, class I; KEGG: hch:HCH_00662 hypothetical protein YP_004511459.1 KEGG: lch:Lcho_4144 transposase IS3/IS911 family protein; manually curated; PFAM: Transposase IS3/IS911 YP_004511460.1 PFAM: RNA-directed DNA polymerase (reverse transcriptase); Group II intron, maturase-specific; KEGG: aca:ACP_3214 group II intron-encoded maturase YP_004511461.1 PFAM: Transposase IS3/IS911; KEGG: pna:Pnap_1740 transposase YP_004511462.1 PFAM: Integrase, catalytic core; KEGG: ppr:PBPRB1144 transposase YP_004511463.1 PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; TIGRFAM: Sulphate adenylyltransferase, large subunit; HAMAP: Sulfate adenylyltransferase subunit 1; KEGG: mca:MCA2628 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase YP_004511464.1 PFAM: Phosphoadenosine phosphosulphate reductase; TIGRFAM: Sulphate adenylyltransferase, small subunit; HAMAP: Sulfate adenylyltransferase subunit 2; KEGG: cja:CJA_2122 sulfate adenylyltransferase subunit 2 YP_004511465.1 PFAM: Sulphate transporter; KEGG: mca:MCA1443 sulfate transporter family protein YP_004511466.1 KEGG: mca:MCA1442 carbonic anhydrase; PFAM: Carbonic anhydrase YP_004511467.1 TIGRFAM: NADH-quinone oxidoreductase, chain M; KEGG: nhl:Nhal_2893 proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase YP_004511468.1 TIGRFAM: NADH-quinone oxidoreductase, chain M; KEGG: noc:Noc_1249 proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase YP_004511469.1 KEGG: mca:MCA0513 NADH ubiquinone/plastoquinone complex subunit, PFAM: NADH:ubiquinone/plastoquinone oxidoreductase YP_004511470.1 KEGG: mca:MCA0512 hypothetical protein; HAMAP: UPF0753 protein; PFAM: Protein of unknown function DUF2309 YP_004511471.1 TIGRFAM: NADH-quinone oxidoreductase, chain M; KEGG: nhl:Nhal_2897 proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase YP_004511472.1 TIGRFAM: Conserved hypothetical protein CHP00246; HAMAP: Ribosomal RNA large subunit methyltransferase H; KEGG: mca:MCA0377 rRNA large subunit methyltransferase; PFAM: SPOUT methyltransferase, predicted YP_004511473.1 TIGRFAM: Maf-like protein; HAMAP: Maf-like protein; KEGG: cja:CJA_2814 septum formation protein Maf; PFAM: Maf-like protein YP_004511474.1 KEGG: mca:MCA0379 ribonuclease G; TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA binding domain YP_004511475.1 TIGRFAM: Conserved hypothetical protein CHP02099; KEGG: mca:MCA0380 hypothetical protein YP_004511476.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: mca:MCA0381 carbon-nitrogen family hydrolase YP_004511478.1 KEGG: mca:MCA2730 molybdenum cofactor biosynthesis protein C; TIGRFAM: Molybdopterin cofactor biosynthesis MoaC region; PFAM: Molybdopterin cofactor biosynthesis MoaC region YP_004511479.1 PFAM: ThiamineS; KEGG: tgr:Tgr7_2951 molybdopterin converting factor, subunit 1 YP_004511480.1 PFAM: Molybdopterin biosynthesis MoaE; KEGG: tgr:Tgr7_2952 molybdopterin biosynthesis MoaE protein YP_004511482.1 KEGG: vcj:VCD_002404 lipoprotein YP_004511483.1 KEGG: nwa:Nwat_0602 hypothetical protein YP_004511484.1 KEGG: mca:MCA0969 NAD(+) synthetase; TIGRFAM: NAD+ synthase; PFAM: NAD+ synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004511485.1 TIGRFAM: Succinyl-CoA ligase, alpha subunit; KEGG: tgr:Tgr7_0810 succinyl-CoA synthetase, alpha subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding YP_004511486.1 PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; ATP-citrate lyase/succinyl-CoA ligase; TIGRFAM: Succinyl-CoA synthetase, beta subunit; HAMAP: Succinyl-CoA ligase [ADP-forming] subunit beta; KEGG: mca:MCA0967 succinyl-CoA synthase, beta subunit YP_004511487.1 KEGG: cja:CJA_3208 sensor kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004511488.1 KEGG: nhl:Nhal_0598 sigma-54 factor interaction domain-containing protein; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_004511489.1 KEGG: mca:MCA0965 hypothetical protein YP_004511490.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: dak:DaAHT2_0342 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted YP_004511491.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: dak:DaAHT2_0343 signal transduction protein YP_004511492.1 PFAM: Phosphate-selective porin O/P; KEGG: nmu:Nmul_A0898 phosphate-selective porin O and P YP_004511493.1 KEGG: rce:RC1_1861 hypothetical protein YP_004511494.1 PFAM: Polysaccharide biosynthesis protein; KEGG: cyn:Cyan7425_3797 polysaccharide biosynthesis protein YP_004511495.1 KEGG: cyn:Cyan7425_3797 polysaccharide biosynthesis protein; manually curated; PFAM: Polysaccharide biosynthesis protein YP_004511496.1 TIGRFAM: Aquaporin; HAMAP: Aquaporin Z; KEGG: mms:mma_2544 aquaporin Z; PFAM: Major intrinsic protein YP_004511497.1 TIGRFAM: Glucose-6-phosphate dehydrogenase; KEGG: nhl:Nhal_2215 glucose-6-phosphate 1-dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase YP_004511499.1 PFAM: Proteasome, subunit alpha/beta; KEGG: tgr:Tgr7_1017 hypothetical protein YP_004511500.1 PFAM: Protein of unknown function DUF404, bacteria N-terminal; Protein of unknown function DUF407; KEGG: hna:Hneap_1312 protein of unknown function DUF404 YP_004511501.1 PFAM: Protein of unknown function DUF403, bacteria; KEGG: hna:Hneap_1311 protein of unknown function DUF403 YP_004511502.1 KEGG: hna:Hneap_1310 20S proteasome, A and B subunits YP_004511503.1 KEGG: hna:Hneap_1309 protein of unknown function DUF2126; PFAM: Protein of unknown function DUF2126; Bacterial transglutaminase-like, N-terminal; Transglutaminase-like; SMART: Transglutaminase-like YP_004511505.1 KEGG: hna:Hneap_1308 hypothetical protein YP_004511507.1 KEGG: meh:M301_0046 hypothetical protein YP_004511508.1 PFAM: Glycosyl transferase, family 2; KEGG: pca:Pcar_2790 N-glycosyltransferase YP_004511509.1 PFAM: Tetratricopeptide TPR2; KEGG: pca:Pcar_2792 hypothetical protein YP_004511510.1 PFAM: C-type lectin; PEP-CTERM bacterial; KEGG: cyj:Cyan7822_6057 YD repeat-containing protein YP_004511511.1 PFAM: Polysaccharide deacetylase; KEGG: pca:Pcar_2791 hypothetical protein YP_004511512.1 KEGG: nhl:Nhal_2556 hypothetical protein YP_004511513.1 PFAM: Macrophage migration inhibitory factor; KEGG: tgr:Tgr7_1126 hypothetical protein YP_004511514.1 KEGG: tgr:Tgr7_1709 hypothetical protein YP_004511515.1 KEGG: cvi:CV_3399 bacterioferritin; TIGRFAM: Bacterioferritin; PFAM: Ferritin/Dps protein YP_004511516.1 KEGG: neu:NE2103 CopG family protein YP_004511517.1 KEGG: axy:AXYL_04063 hypothetical protein YP_004511518.1 HAMAP: Chaperone protein htpG; PFAM: Heat shock protein Hsp90, C-terminal; ATP-binding region, ATPase-like; KEGG: mca:MCA0848 heat shock protein 90; SMART: ATP-binding region, ATPase-like YP_004511519.1 TIGRFAM: RelA/SpoT protein; KEGG: mca:MCA1920 GTP pyrophosphokinase; PFAM: RelA/SpoT; TGS YP_004511520.1 KEGG: sde:Sde_2024 low molecular weight phosphotyrosine protein phosphatase; PFAM: Lytic transglycosylase-like, catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup YP_004511521.1 PFAM: Methyltransferase type 11; KEGG: neu:NE0139 generic methyl-transferase YP_004511522.1 HAMAP: Ribonuclease H; KEGG: abo:ABO_1224 ribonuclease H; PFAM: Ribonuclease H YP_004511524.1 PFAM: Excinuclease ABC, C subunit, N-terminal; KEGG: ppd:Ppro_0544 excinuclease ABC subunit C YP_004511525.1 KEGG: nhl:Nhal_0414 hypothetical protein YP_004511526.1 PFAM: FMN-binding; KEGG: nhl:Nhal_0415 FMN-binding domain protein YP_004511527.1 KEGG: nhl:Nhal_1772 hypothetical protein YP_004511529.1 KEGG: ppf:Pput_1177 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding YP_004511530.1 KEGG: avn:Avin_19810 hydroxypyruvate isomerase; PFAM: Xylose isomerase, TIM barrel domain YP_004511531.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: tgr:Tgr7_1155 glyoxalase/bleomycin resistance protein/dioxygenase YP_004511533.1 KEGG: dma:DMR_34810 hypothetical protein YP_004511534.1 PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: mca:MCA2849 potassium transporter peripheral membrane component YP_004511535.1 TIGRFAM: Sucrose-phosphate synthase, glycosyltransferase region; HAD-superfamily hydrolase, subfamily IIB; Sucrose phosphate synthase, sucrose phosphatase-like region; KEGG: alv:Alvin_0252 sucrose-phosphate synthase; PFAM: Sucrose-6F-phosphate phosphohydrolase, plant/cyanobacteria; Glycosyl transferase, group 1 YP_004511536.1 KEGG: noc:Noc_2718 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Sucrose-6F-phosphate phosphohydrolase, plant/cyanobacteria YP_004511537.1 PFAM: Carbohydrate/purine kinase; KEGG: alv:Alvin_0250 PfkB domain-containing protein YP_004511539.1 PFAM: RNA-directed DNA polymerase (reverse transcriptase); KEGG: swo:Swol_2463 RNA-directed DNA polymerase (reverse transcriptase) YP_004511540.1 KEGG: tbd:Tbd_1967 hypothetical protein YP_004511541.1 KEGG: nhl:Nhal_0884 protein of unknown function UPF0125; HAMAP: Protein rnfH; PFAM: Uncharacterised protein family UPF0125 YP_004511542.1 PFAM: Streptomyces cyclase/dehydrase; KEGG: vfm:VFMJ11_2138 cyclase/dehydrase YP_004511543.1 PFAM: Sodium:neurotransmitter symporter; KEGG: mca:MCA2621 sodium-dependent transporter family protein YP_004511544.1 TIGRFAM: SsrA-binding protein; HAMAP: SsrA-binding protein; KEGG: tgr:Tgr7_0962 SsrA-binding protein; PFAM: SsrA-binding protein YP_004511545.1 PFAM: Isochorismatase-like; KEGG: tgr:Tgr7_0482 isochorismatase hydrolase YP_004511546.1 PFAM: ApbE-like lipoprotein; KEGG: cja:CJA_1148 ApbE family protein YP_004511547.1 KEGG: mca:MCA1825 hypothetical protein YP_004511548.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: slt:Slit_2116 phosphoribosylanthranilate isomerase YP_004511549.1 PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; TIGRFAM: Tryptophan synthase, beta chain; HAMAP: Tryptophan synthase beta chain; KEGG: tgr:Tgr7_1253 tryptophan synthase subunit beta YP_004511550.1 PFAM: Tryptophan synthase, alpha chain; TIGRFAM: Tryptophan synthase, alpha chain; HAMAP: Tryptophan synthase, alpha chain; KEGG: mca:MCA2494 tryptophan synthase, alpha subunit YP_004511551.1 PFAM: Carboxyl transferase; TIGRFAM: Acetyl-CoA carboxylase carboxyl transferase, beta subunit; HAMAP: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; KEGG: mca:MCA2493 acetyl-CoA carboxylase, carboxyl transferase, beta subunit YP_004511552.1 TIGRFAM: Folylpolyglutamate synthetase; KEGG: mca:MCA2492 folylpolyglutamate synthase/dihydrofolate synthase; PFAM: Mur ligase, central; Mur ligase, C-terminal YP_004511553.1 PFAM: Sporulation/cell division region, bacteria; KEGG: mca:MCA2491 hypothetical protein YP_004511554.1 PFAM: Colicin V production protein; KEGG: mca:MCA2490 CvpA family protein YP_004511555.1 TIGRFAM: Amidophosphoribosyl transferase; KEGG: mca:MCA2489 amidophosphoribosyltransferase; PFAM: Glutamine amidotransferase, class-II; Phosphoribosyltransferase YP_004511556.1 KEGG: mca:MCA2488 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YP_004511557.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: dat:HRM2_05740 signal transduction family protein (GGDEF domain protein); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted YP_004511559.1 KEGG: avn:Avin_04690 dithiol-glutaredoxin protein; TIGRFAM: Glutaredoxin, GrxC; PFAM: Glutaredoxin YP_004511560.1 PFAM: Class II aldolase/adducin, N-terminal; KEGG: hch:HCH_01901 ribulose-5-phosphate 4-epimerase and related epimerase and aldolases YP_004511561.1 PFAM: Mechanosensitive ion channel MscS; KEGG: nhl:Nhal_3600 MscS mechanosensitive ion channel YP_004511562.1 TIGRFAM: Ribonucleotide reductase regulator NrdR-like; HAMAP: Transcriptional repressor nrdR; KEGG: mca:MCA1659 transcriptional regulator NrdR; PFAM: ATP-cone YP_004511563.1 TIGRFAM: Riboflavin biosynthesis protein RibD; Riboflavin-specific deaminase, C-terminal; KEGG: mca:MCA1658 riboflavin biosynthesis protein RibD; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; CMP/dCMP deaminase, zinc-binding YP_004511564.1 TIGRFAM: Lumazine-binding protein; KEGG: tgr:Tgr7_1560 riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein YP_004511565.1 TIGRFAM: DHBP synthase RibB; HAMAP: 3,4-dihydroxy-2-butanone 4-phosphate synthase; KEGG: mca:MCA1656 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; PFAM: DHBP synthase RibB; GTP cyclohydrolase II YP_004511566.1 TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: alv:Alvin_1768 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase YP_004511567.1 TIGRFAM: NusB antitermination factor; HAMAP: N utilization substance protein B-like protein; KEGG: noc:Noc_0803 NusB antitermination factor; PFAM: NusB/RsmB/TIM44 YP_004511568.1 TIGRFAM: Thiamine-monophosphate kinase; KEGG: alv:Alvin_1766 thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein, C-terminal YP_004511569.1 KEGG: shm:Shewmr7_1168 phosphatidylglycerophosphatase; PFAM: Phosphatidylglycerophosphatase A YP_004511570.1 PFAM: Protein of unknown function DUF336; KEGG: neu:NE2508 hypothetical protein YP_004511571.1 KEGG: mca:MCA2875 hypothetical protein YP_004511572.1 manually curated; KEGG: kko:Kkor_2526 hypothetical protein YP_004511574.1 PFAM: Uncharacterised protein family UPF0027; KEGG: azo:azo0079 RtcB protein YP_004511576.1 KEGG: alv:Alvin_2134 type I secretion outer membrane protein, TolC family; TIGRFAM: Type I secretion outer membrane protein, TolC; PFAM: Outer membrane efflux protein YP_004511577.1 TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; KEGG: mca:MCA2203 UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase YP_004511578.1 KEGG: mca:MCA0778 methanol utilization control sensor protein MoxY, PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; HAMP linker domain; SMART: HAMP linker domain YP_004511579.1 PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; TIGRFAM: Phosphoribosylglycinamide synthetase; HAMAP: Phosphoribosylglycinamide synthetase; KEGG: mca:MCA0361 phosphoribosylamine--glycine ligase YP_004511580.1 PFAM: Histidine triad (HIT) protein; KEGG: tkm:TK90_1852 histidine triad (HIT) protein YP_004511581.1 PFAM: Protein of unknown function DUF190; KEGG: mca:MCA1930 hypothetical protein YP_004511582.1 TIGRFAM: Camphor resistance CrcB protein; HAMAP: CrcB-like protein; KEGG: mca:MCA1973 CrcB protein domain-containing protein; PFAM: Camphor resistance CrcB protein YP_004511583.1 TIGRFAM: GTPase EngC; HAMAP: ribosome biogenesis GTPase RsgA; KEGG: mca:MCA0537 hypothetical protein; PFAM: GTPase EngC YP_004511584.1 KEGG: mca:MCA0538 M48 family peptidase; PFAM: Peptidase M48, Ste24p YP_004511585.1 HAMAP: Oligoribonuclease; PFAM: Exonuclease, RNase T/DNA polymerase III; KEGG: psa:PST_3793 oligoribonuclease; SMART: Exonuclease YP_004511586.1 PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Seryl-tRNA synthetase, class IIa, N-terminal; TIGRFAM: Seryl-tRNA synthetase, class IIa; HAMAP: Seryl-tRNA synthetase; KEGG: mca:MCA1971 seryl-tRNA synthetase YP_004511587.1 PFAM: Globin, truncated bacterial-like; KEGG: mca:MCA2507 hypothetical protein YP_004511588.1 KEGG: pna:Pnap_1740 transposase YP_004511589.1 PFAM: Integrase, catalytic core; KEGG: ppr:PBPRB1144 transposase YP_004511591.1 PFAM: Glucose-6-phosphate dehydrogenase subunit; KEGG: hau:Haur_3022 glucose-6-phosphate dehydrogenase assembly protein OpcA-like protein YP_004511592.1 TIGRFAM: Glucose-6-phosphate dehydrogenase; KEGG: nde:NIDE2203 glucose-6-phosphate dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase YP_004511593.1 KEGG: cyc:PCC7424_3777 glucose-6-phosphate isomerase; HAMAP: Phosphoglucose isomerase (PGI); PFAM: Phosphoglucose isomerase (PGI) YP_004511594.1 TIGRFAM: 6-phosphogluconate dehydrogenase related protein; KEGG: bra:BRADO5810 6-phosphogluconate dehydrogenase-like protein; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase, C-terminal YP_004511595.1 KEGG: bja:bll2800 bifunctional serine/threonine kinase and phosphatase; PFAM: Serine/threonine-protein kinase-like domain; Protein phosphatase 2C, N-terminal; SMART: Protein phosphatase 2C-related; Serine/threonine-protein kinase domain; Tyrosine-protein kinase, subgroup, catalytic domain YP_004511597.1 KEGG: swd:Swoo_2626 major facilitator transporter; TIGRFAM: Nitrate transporter; PFAM: Major facilitator superfamily MFS-1 YP_004511598.1 KEGG: msm:MSMEG_1307 EthD protein; TIGRFAM: Ethyl tert-butyl ether degradation EthD; PFAM: Ethyl tert-butyl ether degradation EthD YP_004511599.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: scl:sce7112 LysR family transcriptional regulator YP_004511600.1 KEGG: caa:Caka_2221 fibronectin type III domain protein; manually curated; PFAM: PEP-CTERM bacterial YP_004511601.1 PFAM: Metallophosphoesterase; KEGG: azo:azo2196 metallo-phosphoesterase YP_004511602.1 PFAM: PhoU; KEGG: pst:PSPTO_5483 phosphate transport system protein PhoU YP_004511604.1 TIGRFAM: Large-conductance mechanosensitive channel; HAMAP: Large-conductance mechanosensitive channel; KEGG: slt:Slit_0162 large conductance mechanosensitive channel protein; PFAM: Large-conductance mechanosensitive channel YP_004511605.1 TIGRFAM: Chaperonin ClpB; PFAM: ATPase associated with various cellular activities, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; Clp ATPase, C-terminal; KEGG: tgr:Tgr7_0817 ATP-dependent chaperone ClpB; SMART: ATPase, AAA+ type, core YP_004511606.1 KEGG: ank:AnaeK_0262 cold-shock DNA-binding domain protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004511607.1 KEGG: mca:MCA1787 hypothetical protein YP_004511609.1 PFAM: Radical SAM; KEGG: neu:NE1518 hypothetical protein YP_004511610.1 TIGRFAM: Formylmethanofuran dehydrogenase subunit C; KEGG: nhl:Nhal_0012 formylmethanofuran dehydrogenase subunit C; PFAM: Glutamate synthase, alpha subunit, C-terminal YP_004511611.1 PFAM: Formylmethanofuran: tetrahydromethanopterin formyltransferase (Ftr); TIGRFAM: Formylmethanofuran: tetrahydromethanopterin formyltransferase (Ftr), subgroup; HAMAP: Formylmethanofuran--tetrahydromethanopterin formyltransferase; KEGG: mca:MCA2858 formylmethanofuran--tetrahydromethanopterin formyltransferase YP_004511612.1 KEGG: nhl:Nhal_0014 formylmethanofuran dehydrogenase subunit A; TIGRFAM: Formylmethanofuran dehydrogenase, subunit A; PFAM: Amidohydrolase 3 YP_004511613.1 KEGG: nhl:Nhal_0015 formylmethanofuran dehydrogenase subunit B YP_004511614.1 PFAM: Transcriptional coactivator/pterin dehydratase; KEGG: mfa:Mfla_1646 pterin-4-alpha-carbinolamine dehydratase YP_004511615.1 PFAM: Stringent starvation protein B; KEGG: mca:MCA1958 ClpXP protease specificity-enhancing factor YP_004511616.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: mca:MCA1959 stringent starvation protein A YP_004511617.1 PFAM: Cytochrome c1; KEGG: nhl:Nhal_3862 cytochrome c1 YP_004511618.1 PFAM: Cytochrome b/b6, N-terminal; Cytochrome b/b6, C-terminal; KEGG: tbd:Tbd_1832 cytochrome b subunit of cytochrome bc1 YP_004511619.1 TIGRFAM: Ubiquinol-cytochrome c reductase, iron-sulphur subunit; KEGG: mca:MCA1962 ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal; Rieske [2Fe-2S] iron-sulphur domain YP_004511620.1 PFAM: Aminotransferase, class I/II; TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: nhl:Nhal_0352 histidinol-phosphate aminotransferase YP_004511621.1 KEGG: mei:Msip34_0377 amino acid carrier protein; TIGRFAM: Sodium:alanine symporter; PFAM: Sodium:alanine symporter YP_004511622.1 TIGRFAM: Prevent-host-death protein; KEGG: gur:Gura_2397 prevent-host-death family protein YP_004511623.1 PFAM: PilT protein, N-terminal; KEGG: gur:Gura_2398 PilT domain-containing protein YP_004511624.1 KEGG: app:CAP2UW1_2485 tetratricopeptide TPR_4 YP_004511625.1 PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; KEGG: app:CAP2UW1_2484 tetratricopeptide TPR_2 repeat protein YP_004511626.1 KEGG: syf:Synpcc7942_1288 hypothetical protein YP_004511627.1 manually curated; KEGG: aba:Acid345_3611 hypothetical protein YP_004511628.1 PFAM: Protein of unknown function DUF1877; KEGG: neu:NE1814 hypothetical protein YP_004511629.1 KEGG: ank:AnaeK_4104 hypothetical protein YP_004511631.1 PFAM: Transposase IS3/IS911; KEGG: azl:AZL_f00580 transposase YP_004511632.1 PFAM: Integrase, catalytic core; KEGG: psp:PSPPH_A0089 ISPsy21, transposase orfB YP_004511633.1 KEGG: lpn:lpg2914 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004511634.1 PFAM: Protein of unknown function DUF497; KEGG: mch:Mchl_1764 protein of unknown function DUF497 YP_004511635.1 KEGG: pna:Pnap_3099 hypothetical protein YP_004511636.1 PFAM: Histidinol dehydrogenase, prokaryotic-type; TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; HAMAP: Histidinol dehydrogenase, prokaryotic-type; KEGG: ppw:PputW619_4249 histidinol dehydrogenase YP_004511637.1 PFAM: ATP phosphoribosyltransferase, catalytic region; TIGRFAM: ATP phosphoribosyltransferase, catalytic region; HAMAP: ATP phosphoribosyltransferase; KEGG: mca:MCA1964 ATP phosphoribosyltransferase catalytic subunit YP_004511638.1 PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; KEGG: mca:MCA1965 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_004511639.1 PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: nwa:Nwat_0305 anti-sigma-factor antagonist YP_004511640.1 PFAM: Mammalian cell entry related; KEGG: mca:MCA1967 hypothetical protein YP_004511641.1 KEGG: mca:MCA1968 hypothetical protein; TIGRFAM: Protein of unknown function DUF140; PFAM: Protein of unknown function DUF140 YP_004511642.1 PFAM: ABC transporter-like; KEGG: mca:MCA1969 ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004511643.1 TIGRFAM: KpsF/GutQ; KEGG: nhl:Nhal_0339 KpsF/GutQ family protein; PFAM: Sugar isomerase (SIS); Cystathionine beta-synthase, core YP_004511644.1 TIGRFAM: Phosphatase KdsC; HAD-superfamily hydrolase, subfamily IIIA; KEGG: nla:NLA_4140 hydrolase; PFAM: Haloacid dehalogenase-like hydrolase YP_004511645.1 PFAM: Protein of unknown function DUF1239; KEGG: tgr:Tgr7_0729 hypothetical protein YP_004511646.1 KEGG: mca:MCA0743 hypothetical protein; TIGRFAM: Cell envelope biogenesis YhbN; PFAM: OstA-like protein YP_004511647.1 PFAM: ABC transporter-like; KEGG: mca:MCA0742 ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004511648.1 KEGG: mca:MCA0741 RNA polymerase factor sigma-54; TIGRFAM: RNA polymerase sigma factor 54; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54 YP_004511649.1 KEGG: tgr:Tgr7_0725 sigma 54 modulation protein / SSU ribosomal protein S30P; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein YP_004511650.1 HAMAP: ATPase, P-loop-containing; KEGG: mca:MCA0739 hypothetical protein YP_004511651.1 KEGG: nhl:Nhal_0326 magnesium transporter; TIGRFAM: Divalent cation transporter; PFAM: Magnesium transporter, MgtE intracellular region; Cystathionine beta-synthase, core; MgtE integral membrane region YP_004511652.1 TIGRFAM: Septum formation inhibitor MinC; HAMAP: Septum formation inhibitor MinC; KEGG: neu:NE1831 cell division inhibitor MinC; PFAM: Septum formation inhibitor MinC, C-terminal; Septum formation inhibitor MinC, N-terminal YP_004511653.1 KEGG: net:Neut_1136 septum site-determining protein MinD; TIGRFAM: Septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase YP_004511654.1 TIGRFAM: Septum formation topological specificity factor MinE; HAMAP: Septum formation topological specificity factor MinE; KEGG: neu:NE1829 cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE YP_004511655.1 PFAM: Protein of unknown function DUF2582; KEGG: mca:MCA3069 hypothetical protein YP_004511656.1 PFAM: Glycosyl transferase, family 2; KEGG: pla:Plav_0560 glycosyl transferase YP_004511657.1 PFAM: SAICAR synthetase; TIGRFAM: SAICAR synthetase; HAMAP: Phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: alv:Alvin_2538 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_004511658.1 PFAM: Protein of unknown function DUF877; KEGG: nde:NIDE2011 hypothetical protein YP_004511659.1 KEGG: hch:HCH_00093 autotransporter beta-domain-containing protein; TIGRFAM: Outer membrane autotransporter barrel; PFAM: Autotransporter beta-domain YP_004511660.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Coenzyme PQQ biosynthesis protein E, bacteria; KEGG: mca:MCA1449 pyrroloquinoline quinone biosynthesis protein PqqE; HAMAP: Coenzyme PQQ synthesis protein E; PFAM: Radical SAM YP_004511661.1 TIGRFAM: coenzyme PQQ biosynthesis protein PqqD; KEGG: mca:MCA1448 pyrroloquinoline quinone biosynthesis protein PqqD YP_004511662.1 PFAM: Protein of unknown function DUF820; KEGG: tmz:Tmz1t_3808 protein of unknown function DUF820 YP_004511663.1 PFAM: TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C; TIGRFAM: Coenzyme PQQ biosynthesis protein C; HAMAP: Pyrroloquinoline-quinone synthase; KEGG: mca:MCA1447 pyrroloquinoline quinone biosynthesis protein PqqC YP_004511664.1 KEGG: mca:MCA1446 pyrroloquinoline quinone biosynthesis protein PqqB; TIGRFAM: Coenzyme PQQ biosynthesis protein B; HAMAP: Coenzyme PQQ synthesis protein B YP_004511665.1 KEGG: mca:MCA1445.1 coenzyme PQQ biosynthesis protein A; TIGRFAM: Coenzyme PQQ biosynthesis protein A; HAMAP: Coenzyme PQQ synthesis protein A; PFAM: Coenzyme PQQ biosynthesis protein A YP_004511666.1 PFAM: Protein of unknown function DUF81; KEGG: mca:MCA0023 hypothetical protein YP_004511667.1 KEGG: mca:MCA0022 tRNA nucleotidyltransferase; HAMAP: Multifunctional CCA protein; PFAM: Polynucleotide adenylyltransferase region; Metal-dependent phosphohydrolase, HD region, subdomain YP_004511668.1 PFAM: Protein of unknown function DUF486; KEGG: mmw:Mmwyl1_2937 hypothetical protein YP_004511669.1 PFAM: Protein of unknown function DUF519; KEGG: vex:VEA_001953 hypothetical protein YP_004511671.1 PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: mca:MCA0382 TldD protein YP_004511672.1 PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: mca:MCA0383 PmbA protein YP_004511673.1 KEGG: maq:Maqu_0329 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region YP_004511674.1 SMART: Transcription regulator LuxR, C-terminal; KEGG: ctt:CtCNB1_0624 transcriptional regulator, LuxR family YP_004511675.1 KEGG: mca:MCA2814 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004511676.1 PFAM: Acriflavin resistance protein; KEGG: mca:MCA2815 AcrB/AcrD/AcrF family protein YP_004511677.1 KEGG: mca:MCA2816 outer membrane efflux family protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004511678.1 PFAM: Dihydroorotate dehydrogenase, class 1/ 2; TIGRFAM: Dihydroorotate dehydrogenase, class 2; HAMAP: Dihydroorotate dehydrogenase; KEGG: cvi:CV_1812 dihydroorotate dehydrogenase 2 YP_004511679.1 PFAM: FAD dependent oxidoreductase; KEGG: alv:Alvin_1597 FAD dependent oxidoreductase YP_004511680.1 KEGG: neu:NE2218 hypothetical protein YP_004511681.1 TIGRFAM: Peptidase S33, proline iminopeptidase 1; KEGG: mca:MCA1737 proline iminopeptidase; PFAM: Alpha/beta hydrolase fold-1 YP_004511682.1 KEGG: mms:mma_3265 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: Phenylacrylic acid decarboxylase; PFAM: Flavoprotein YP_004511683.1 TIGRFAM: 3-hexulose-6-phosphate synthase; KEGG: mca:MCA3049 hexulose-6-phosphate synthase; PFAM: Orotidine 5'-phosphate decarboxylase, core YP_004511684.1 TIGRFAM: Transketolase, bacterial-like; KEGG: mca:MCA3046 transketolase; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal YP_004511686.1 KEGG: lif:LinJ32.2780 membrane associated protein-like protein YP_004511687.1 KEGG: mca:MCA2466 hypothetical protein YP_004511690.1 KEGG: mca:MCA2986 pteridine reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004511691.1 KEGG: mca:MCA2987 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YP_004511692.1 KEGG: mca:MCA2988 dihydroneopterin aldolase; TIGRFAM: Dihydroneopterin aldolase; Dihydroneopterin aldolase subgroup; PFAM: Dihydroneopterin aldolase YP_004511693.1 TIGRFAM: Membrane protein YgiH; HAMAP: Protein of unknown function DUF205; KEGG: mca:MCA2989 hypothetical protein; PFAM: Protein of unknown function DUF205 YP_004511694.1 PFAM: Peptidase M22, glycoprotease; TIGRFAM: glycoprotease GCP; Peptidase M22, glycoprotease, subgroup; HAMAP: O-sialoglycoprotein endopeptidase; KEGG: vsa:VSAL_I2694 DNA-binding/iron metalloprotein/AP endonuclease YP_004511695.1 TIGRFAM: Ribosomal protein S21; HAMAP: Ribosomal protein S21; KEGG: mca:MCA2991 ribosomal protein S21; PFAM: Ribosomal protein S21 YP_004511696.1 KEGG: tgr:Tgr7_3018 hypothetical protein YP_004511697.1 TIGRFAM: DNA primase, DnaG; KEGG: mca:MCA2993 DNA primase YP_004511698.1 KEGG: mca:MCA2994 RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma factor RpoD, C-terminal; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 3; RNA polymerase sigma factor 70, region 1.1; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma factor 70, non-essential region; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4 YP_004511699.1 PFAM: S-adenosylmethionine synthetase; TIGRFAM: S-adenosylmethionine synthetase; HAMAP: S-adenosylmethionine synthase; KEGG: mca:MCA0139 S-adenosylmethionine synthetase YP_004511700.1 PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding; TIGRFAM: S-adenosyl-L-homocysteine hydrolase; HAMAP: Adenosylhomocysteinase; KEGG: adenosylhomocysteinase YP_004511701.1 TIGRFAM: Adenosylmethionine--8-amino-7-oxononanoate aminotransferase; KEGG: nhl:Nhal_3353 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: Aminotransferase class-III YP_004511702.1 KEGG: mca:MCA0018 hypothetical protein; TIGRFAM: Ribosomal RNA small subunit methyltransferase E; PFAM: Ribosomal RNA small subunit methyltransferase E YP_004511703.1 PFAM: Abortive infection protein; KEGG: mca:MCA0527 hypothetical protein YP_004511704.1 KEGG: nmu:Nmul_A1766 hypothetical protein; PFAM: Aminoglycoside phosphotransferase; SMART: CHK kinase-like YP_004511705.1 KEGG: hch:HCH_05208 aspartate kinase; TIGRFAM: Aspartate kinase region; Aspartate kinase, monofunctional class; PFAM: Aspartate/glutamate/uridylate kinase; Amino acid-binding ACT YP_004511706.1 KEGG: mep:MPQ_0662 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); PFAM: Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain YP_004511707.1 PFAM: Filamentation induced by cAMP/death on curing, related; KEGG: dsa:Desal_0157 filamentation induced by cAMP protein Fic YP_004511708.1 PFAM: Queuine/other tRNA-ribosyltransferase; TIGRFAM: Queuine tRNA-ribosyltransferase; Queuine/other tRNA-ribosyltransferase; HAMAP: Queuine tRNA-ribosyltransferase; KEGG: hch:HCH_04469 queuine tRNA-ribosyltransferase YP_004511709.1 KEGG: mca:MCA1366 hypothetical protein YP_004511711.1 PFAM: PEP-CTERM bacterial; KEGG: mfa:Mfla_1122 hypothetical protein YP_004511712.1 PFAM: Integrase, catalytic core; KEGG: ppr:PBPRB1144 transposase YP_004511713.1 KEGG: pna:Pnap_1740 transposase YP_004511714.1 PFAM: Transposase, IS4-like; KEGG: xbo:XBJ1_1885 transposase YP_004511715.1 PFAM: Cell division protein ZapA-like; KEGG: tgr:Tgr7_2768 protein of unknown function DUF710 YP_004511716.1 TIGRFAM: Conserved hypothetical protein CHP02449; KEGG: nhl:Nhal_3714 hypothetical protein YP_004511717.1 TIGRFAM: YgfB/YecA protein; KEGG: mca:MCA2771 hypothetical protein YP_004511718.1 PFAM: Peptidase M24, structural domain; Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal; KEGG: mca:MCA2770 xaa-pro aminopeptidase YP_004511719.1 KEGG: mca:MCA2769 2-octaprenyl-6-methoxyphenol hydroxylase; TIGRFAM: 2-polyprenyl-6-methoxyphenol 4-hydroxylase; Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: Lycopene beta/epsilon cyclase YP_004511720.1 KEGG: lch:Lcho_4278 phosphohistidine phosphatase, SixA; TIGRFAM: Phosphohistidine phosphatase SixA, subgroup; PFAM: Phosphoglycerate mutase YP_004511721.1 TIGRFAM: SecA protein; HAMAP: Protein translocase subunit secA; KEGG: nhl:Nhal_0500 preprotein translocase, SecA subunit; PFAM: SecA DEAD-like; SecA preprotein cross-linking region; SecA Wing/Scaffold; SEC-C motif YP_004511722.1 KEGG: mca:MCA2540 glycogen phosphorylase; TIGRFAM: Glycogen/starch/alpha-glucan phosphorylase; PFAM: Glycosyl transferase, family 35 YP_004511723.1 KEGG: RNA methyltransferase, TrmH family, group 2; TIGRFAM: RNA methyltransferase TrmH, group 2; PFAM: tRNA/rRNA methyltransferase, SpoU YP_004511724.1 KEGG: avi:Avi_9528 hypothetical protein YP_004511725.1 PFAM: Integrase, catalytic core; KEGG: ppr:PBPRB1144 transposase YP_004511726.1 KEGG: pna:Pnap_1740 transposase YP_004511728.1 PFAM: Rhodanese-like; KEGG: nhl:Nhal_3777 rhodanese domain protein; SMART: Rhodanese-like YP_004511729.1 TIGRFAM: Quinone oxidoreductase , PIG3; KEGG: pla:Plav_2092 quinone oxidoreductase PIG3; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like YP_004511730.1 PFAM: Semialdehyde dehydrogenase, NAD-binding; Semialdehyde dehydrogenase, dimerisation region; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; HAMAP: N-acetyl-gamma-glutamyl-phosphate reductase; KEGG: cvi:CV_3695 N-acetyl-gamma-glutamyl-phosphate reductase YP_004511731.1 KEGG: nhl:Nhal_1102 protein of unknown function UPF0075; HAMAP: Anhydro-N-acetylmuramic acid kinase; PFAM: Anhydro-N-acetylmuramic acid kinase YP_004511732.1 PFAM: Peptidase M23; KEGG: ttu:TERTU_0684 M23 peptidase domain protein YP_004511733.1 SMART: RNA-binding S4; TIGRFAM: Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; KEGG: mca:MCA0749 tyrosyl-tRNA synthetase; HAMAP: Tyrosyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; RNA-binding S4 YP_004511734.1 KEGG: vfm:VFMJ11_A0763 hypothetical protein YP_004511735.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: azl:AZL_a02710 abhydrolase domain-containing protein 11 YP_004511737.1 KEGG: ote:Oter_0150 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; PFAM: Phosphofructokinase YP_004511738.1 PFAM: Protein of unknown function DUF1348; KEGG: rsl:RPSI07_2293 conserved hypothethical protein YP_004511739.1 KEGG: pol:Bpro_2654 TetR family transcriptional regulator; manually curated; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal YP_004511740.1 TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: mca:MCA1761 cation-transporting ATPase; PFAM: ATPase, P-type, ATPase-associated region; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal YP_004511742.1 PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB; KEGG: mca:MCA2211 HesA/MoeB/ThiF family protein YP_004511743.1 KEGG: tgr:Tgr7_0438 co-chaperonin GroES; HAMAP: Chaperonin Cpn10, subgroup; PFAM: Chaperonin Cpn10 YP_004511744.1 TIGRFAM: Chaperonin Cpn60; HAMAP: 60 kDa chaperonin; KEGG: mca:MCA0707 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1 YP_004511745.1 KEGG: azl:AZL_014340 hypothetical protein; PFAM: Serine/threonine-protein kinase-like domain; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, subgroup, catalytic domain YP_004511746.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Forkhead-associated; KEGG: mxa:MXAN_5199 FHA/GGDEF domain-containing protein; SMART: Diguanylate cyclase, predicted; Forkhead-associated YP_004511747.1 KEGG: ote:Oter_3778 hypothetical protein YP_004511748.1 KEGG: psp:PSPPH_3940 hypothetical protein YP_004511749.1 KEGG: swd:Swoo_2944 hypothetical protein YP_004511750.1 KEGG: vap:Vapar_2987 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain YP_004511751.1 KEGG: vap:Vapar_2988 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004511752.1 TIGRFAM: Glucose-6-phosphate dehydrogenase; KEGG: rfr:Rfer_4034 glucose-6-phosphate 1-dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase YP_004511753.1 PFAM: Cation transporter; KEGG: mca:MCA2041 TrkH family potassium uptake protein YP_004511754.1 KEGG: gca:Galf_0178 hypothetical protein YP_004511755.1 PFAM: Protein of unknown function DUF2490; KEGG: nwa:Nwat_1502 hypothetical protein YP_004511757.1 PFAM: Protein of unknown function DUF2076; KEGG: mca:MCA1718 hypothetical protein YP_004511758.1 PFAM: Protein of unknown function DUF81; KEGG: mfa:Mfla_1552 hypothetical protein YP_004511761.1 PFAM: Auxin efflux carrier; KEGG: nhl:Nhal_2017 auxin efflux carrier YP_004511762.1 PFAM: Molybdopterin binding; KEGG: mca:MCA1092 molybdenum cofactor biosynthesis protein YP_004511763.1 KEGG: mca:MCA0609 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004511764.1 KEGG: sde:Sde_1233 TRAP dicarboxylate transporter, DctM subunit; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region YP_004511765.1 HAMAP: Phosphoglycerate kinase; KEGG: nhl:Nhal_3448 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase YP_004511767.1 HAMAP: Glutamate-ammonia-ligase adenylyltransferase; KEGG: mca:MCA2345 glutamate-ammonia-ligase adenylyltransferase; PFAM: Glutamate-ammonia ligase adenylyltransferase; PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase YP_004511768.1 PFAM: Cation efflux protein; KEGG: mep:MPQ_1407 cation efflux protein YP_004511769.1 KEGG: eba:p1B277 transposase YP_004511771.1 KEGG: ttu:TERTU_1552 hypothetical protein YP_004511772.1 KEGG: ttu:TERTU_1553 hypothetical protein YP_004511773.1 KEGG: lch:Lcho_4144 transposase IS3/IS911 family protein; manually curated; PFAM: Transposase IS3/IS911 YP_004511774.1 PFAM: Mechanosensitive ion channel MscS; KEGG: hch:HCH_06695 small-conductance mechanosensitive channel YP_004511775.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, F1 complex, beta subunit; KEGG: mca:MCA1556 F0F1 ATP synthase subunit beta; HAMAP: ATPase, F1 complex, beta subunit; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal YP_004511776.1 KEGG: nhl:Nhal_2241 H+transporting two-sector ATPase delta/epsilon subunit; TIGRFAM: ATPase, F1 complex, delta/epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal YP_004511777.1 PFAM: F0F1-ATPase subunit, KEGG: ppd:Ppro_0849 ATP synthase I YP_004511778.1 TIGRFAM: ATPase, F0 complex, subunit A; HAMAP: ATP synthase subunit a; KEGG: nhl:Nhal_2239 ATP synthase F0, A subunit; PFAM: ATPase, F0 complex, subunit A YP_004511779.1 TIGRFAM: ATPase, F0 complex, subunit C, bacterial/chloroplast; HAMAP: ATPase, F0 complex, subunit C; KEGG: lpa:lpa_01627 ATP synthase C subunit (H transporting ATP synthase); PFAM: ATPase, F0/V0 complex, subunit C YP_004511781.1 PFAM: Endonuclease/exonuclease/phosphatase YP_004511782.1 KEGG: app:CAP2UW1_2681 H+transporting two-sector ATPase B/B' subunit; HAMAP: ATP synthase subunit b; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast YP_004511783.1 TIGRFAM: ATPase, F1 complex, alpha subunit; HAMAP: ATPase, F1 complex, alpha subunit; KEGG: mca:MCA2707 F0F1 ATP synthase subunit alpha; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YP_004511784.1 KEGG: mca:MCA2708 ATP synthase F1, gamma subunit YP_004511785.1 KEGG: mca:MCA1290 hypothetical protein YP_004511787.1 KEGG: fbl:Fbal_0840 multi-sensor hybrid histidine kinase; PFAM: Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: Signal transduction response regulator, receiver region YP_004511788.1 KEGG: pmy:Pmen_2321 ImpA domain-containing protein; TIGRFAM: Type VI secretion system-associated, ImpA; PFAM: ImpA, N-terminal YP_004511789.1 KEGG: azo:azo3895 cytoplasmic protein,SciH; TIGRFAM: Uncharacterised conserved protein UCP028301; PFAM: Uncharacterised conserved protein UCP028301 YP_004511790.1 KEGG: psl:Psta_1832 type VI secretion protein, EvpB/VC_A0108 family; TIGRFAM: Protein of unknown function DUF877; PFAM: Protein of unknown function DUF877 YP_004511791.1 KEGG: azo:azo3897 cytoplasmic protein SciM; TIGRFAM: Type VI secretion system effector, Hcp1; PFAM: Virulence factor, secretion apparatus YP_004511792.1 PFAM: virulence protein, SciE type; KEGG: psl:Psta_1834 virulence protein SciE type YP_004511793.1 KEGG: xac:XAC4143 hypothetical protein; TIGRFAM: Type VI secretion system, lysozyme-related; PFAM: GPW/gp25 YP_004511794.1 KEGG: psl:Psta_1836 type VI secretion protein, VC_A0110 family; TIGRFAM: Type VI secretion system, VCA0110; PFAM: Type VI secretion system, VCA0110 YP_004511795.1 KEGG: psl:Psta_1837 type VI secretion protein, VC_A0111 family; TIGRFAM: Protein of unknown function DUF1305; PFAM: Protein of unknown function DUF1305 YP_004511796.1 TIGRFAM: ATPase, type VI secretion system, ClpV1; PFAM: ATPase associated with various cellular activities, AAA-2; ATPase, AAA-type, core; Clp ATPase, C-terminal; KEGG: pau:PA14_01100 ClpA/B-type chaperone; SMART: ATPase, AAA+ type, core YP_004511802.1 PFAM: Methyltransferase type 12; Tetratricopeptide TPR-1; Tetratricopeptide TPR-3; KEGG: lch:Lcho_4081 methyltransferase type 12 YP_004511803.1 TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004511804.1 TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004511805.1 TIGRFAM: Phosphoribosylformylglycinamidine cyclo-ligase; KEGG: mca:MCA0373 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein YP_004511806.1 PFAM: Protein of unknown function DUF2066; KEGG: kko:Kkor_1683 hypothetical protein YP_004511807.1 TIGRFAM: Isopropylmalate dehydrogenase; KEGG: pin:Ping_2229 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase YP_004511808.1 KEGG: alv:Alvin_2959 pyruvate carboxyltransferase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain YP_004511810.1 PFAM: Integrase, catalytic core; KEGG: azl:AZL_b03960 transposase YP_004511811.1 KEGG: tgr:Tgr7_2074 glycogen branching enzyme; PFAM: Alpha-amylase, C-terminal all beta; Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic region; TIGRFAM: 1,4-alpha-glucan branching enzyme, core region; HAMAP: 1,4-alpha-glucan branching enzyme, core region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region YP_004511812.1 KEGG: sse:Ssed_3289 PKD repeat-containing protein; PFAM: PKD; Peptidase, C-terminal, archaeal/bacterial; SMART: PKD YP_004511815.1 KEGG: mca:MCA1019 hypothetical protein YP_004511816.1 PFAM: Transposase, IS4-like; KEGG: mac:MA1045 transposase YP_004511817.1 TIGRFAM: Signal transduction response regulator, nitrogen regulation NR(I); PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; KEGG: mca:MCA2541 nitrogen regulation protein NR(I); SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_004511818.1 KEGG: mca:MCA2542 nitrogen regulation protein NR(II); PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-4; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004511819.1 KEGG: mca:MCA0489 hypothetical protein YP_004511820.1 KEGG: mca:MCA0490 ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter YP_004511821.1 manually curated; HAMAP: Protein slyX; KEGG: abo:ABO_2672 hypothetical protein; PFAM: SlyX YP_004511822.1 KEGG: mca:MCA0564 hypothetical protein YP_004511823.1 KEGG: tgr:Tgr7_0496 hypothetical protein YP_004511824.1 KEGG: mca:MCA1876 homoserine O-succinyltransferase; PFAM: Homoserine O-succinyltransferase YP_004511825.1 KEGG: bld:BLi01418 GuaD; PFAM: CMP/dCMP deaminase, zinc-binding YP_004511826.1 KEGG: mfa:Mfla_2096 hypothetical protein YP_004511828.1 TIGRFAM: ATP-dependent protease HslVU, peptidase subunit; HAMAP: ATP-dependent protease hslV; KEGG: alv:Alvin_2979 20S proteasome subunits A/B; PFAM: Proteasome, subunit alpha/beta YP_004511829.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Heat shock protein HslU; KEGG: mca:MCA2015 ATP-dependent protease ATP-binding subunit HslU; HAMAP: ATP-dependent hsl protease ATP-binding subunit hslU; PFAM: ATPase associated with various cellular activities, AAA-2 YP_004511830.1 PFAM: Protein of unknown function DUF971; KEGG: mep:MPQ_2020 hypothetical protein YP_004511831.1 TIGRFAM: UbiE/COQ5 methyltransferase; HAMAP: UbiE/COQ5 methyltransferase; KEGG: mca:MCA2017 ubiquinone/menaquinone biosynthesis methlytransferase UbiE; PFAM: UbiE/COQ5 methyltransferase YP_004511832.1 PFAM: Sterol-binding; KEGG: alv:Alvin_2975 sterol-binding domain-containing protein YP_004511833.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; HAMAP: ubiquinone biosynthesis protein ubiB; KEGG: mca:MCA2019 ubiquinone biosynthesis protein AarF; PFAM: ABC-1 YP_004511835.1 TIGRFAM: Bacterial 2-isopropylmalate synthase; KEGG: mca:MCA2275 2-isopropylmalate synthase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain YP_004511836.1 KEGG: mca:MCA2276 phage SPO1 DNA polymerase-related protein; TIGRFAM: Phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase-like YP_004511837.1 KEGG: mca:MCA2277 ribosomal-protein-alanine acetyltransferase; TIGRFAM: Ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase YP_004511839.1 KEGG: tgr:Tgr7_0224 general secretion pathway protein C YP_004511840.1 KEGG: aeh:Mlg_2401 general secretion pathway protein D; TIGRFAM: Type II secretion system gspD; PFAM: Type II/III secretion system; NolW-like YP_004511841.1 TIGRFAM: Type II secretion system gspE; PFAM: Type II secretion system protein E; KEGG: tgr:Tgr7_0226 general secretory pathway protein E; SMART: ATPase, AAA+ type, core YP_004511842.1 KEGG: tgr:Tgr7_0227 general secretion pathway protein F; TIGRFAM: General secretion pathway protein F; PFAM: Type II secretion system F domain YP_004511843.1 PFAM: Protein of unknown function DUF2254, membrane; KEGG: nhl:Nhal_1595 hypothetical protein YP_004511844.1 PFAM: Mechanosensitive ion channel MscS; Transport-associated; KEGG: mct:MCR_0648 mechanosensitive ion channel family protein MscS YP_004511845.1 KEGG: sde:Sde_2942 hypothetical protein YP_004511846.1 PFAM: Peptidase C26; KEGG: sde:Sde_2941 glutamine amidotransferase related enzyme YP_004511847.1 PFAM: SNARE associated Golgi protein; KEGG: sde:Sde_2940 hypothetical protein YP_004511848.1 KEGG: cyh:Cyan8802_2478 protein of unknown function DUF1555 YP_004511849.1 KEGG: pmy:Pmen_2923 general secretion pathway protein G; TIGRFAM: General secretion pathway protein G; Prepilin-type cleavage/methylation, N-terminal; PFAM: Type II secretion system protein G; Prepilin-type cleavage/methylation, N-terminal YP_004511850.1 TIGRFAM: General secretion pathway protein H; Prepilin-type cleavage/methylation, N-terminal; KEGG: aeh:Mlg_2390 general secretion pathway protein H YP_004511851.1 KEGG: pmy:Pmen_2921 general secretion pathway protein I; TIGRFAM: General secretion pathway protein I; Prepilin-type cleavage/methylation, N-terminal; PFAM: Type II secretion system protein I/J; Prepilin-type cleavage/methylation, N-terminal YP_004511852.1 TIGRFAM: General secretion pathway protein J; Prepilin-type cleavage/methylation, N-terminal; KEGG: pag:PLES_19621 general secretion pathway protein J YP_004511853.1 KEGG: dak:DaAHT2_2261 general secretion pathway protein K YP_004511854.1 KEGG: dak:DaAHT2_2262 general secretion pathway protein L; TIGRFAM: General secretion pathway L; PFAM: General secretion pathway L YP_004511855.1 PFAM: General secretion pathway M protein; KEGG: hha:Hhal_2387 general secretion pathway M protein YP_004511856.1 PFAM: PEP-CTERM bacterial YP_004511857.1 KEGG: tbd:Tbd_0353 hypothetical protein YP_004511858.1 PFAM: Polypeptide-transport-associated, ShlB-type; KEGG: mca:MCA2226 hypothetical protein YP_004511859.1 KEGG: mca:MCA2227 hemagglutinin-related protein; TIGRFAM: Filamentous haemagglutinin, N-terminal, bacterial; PFAM: Filamentous haemagglutinin, N-terminal, bacterial YP_004511860.1 PFAM: MotA/TolQ/ExbB proton channel; Protein of unknown function DUF2341; KEGG: mca:MCA2238 MotA/TolQ/ExbB proton channel family protein YP_004511861.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: nmu:Nmul_A2569 biopolymer transport protein ExbD/TolR YP_004511862.1 KEGG: mca:MCA2236 TonB-dependent receptor YP_004511863.1 KEGG: mca:MCA2235 hypothetical protein YP_004511864.1 KEGG: tbd:Tbd_0362 hypothetical protein YP_004511865.1 PFAM: DbpA, RNA-binding; KEGG: ttu:TERTU_2534 cold-shock DEAD box protein A DbpA YP_004511866.1 KEGG: mca:MCA0602 peptidyl-prolyl cis-trans isomerase SurA; HAMAP: Chaperone surA; PFAM: SurA N-terminal; Peptidyl-prolyl cis-trans isomerase, PpiC-type YP_004511867.1 KEGG: mca:MCA0601 organic solvent tolerance protein, HAMAP: LPS-assembly protein lptD; PFAM: Organic solvent tolerance protein; OstA-like protein YP_004511868.1 PFAM: Aminoglycoside phosphotransferase; KEGG: mca:MCA0600 hypothetical protein YP_004511869.1 PFAM: Nucleotidyl transferase; KEGG: lhk:LHK_03191 nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) YP_004511870.1 KEGG: nhl:Nhal_2514 hypothetical protein YP_004511871.1 KEGG: nhl:Nhal_2515 heat shock protein DnaJ domain protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal YP_004511872.1 PFAM: GrpE nucleotide exchange factor; KEGG: hha:Hhal_0144 GrpE protein YP_004511873.1 PFAM: Heat shock protein 70; KEGG: nhl:Nhal_2517 heat shock protein 70 YP_004511874.1 KEGG: nhl:Nhal_2518 hypothetical protein YP_004511876.1 PFAM: Protein of unknown function DUF482; KEGG: hch:HCH_00354 hypothetical protein YP_004511877.1 PFAM: Protein of unknown function DUF938; KEGG: pha:PSHAa0049 methylase YP_004511878.1 KEGG: bid:Bind_3575 amine oxidase YP_004511879.1 PFAM: Glutathione S-transferase, N-terminal; KEGG: avn:Avin_48720 glutathione S-transferase YP_004511880.1 KEGG: ttu:TERTU_1569 hemerythrin metal-binding domain protein; TIGRFAM: Haemerythrin-like, metal-binding; PFAM: Haemerythrin/HHE cation-binding motif YP_004511881.1 KEGG: azo:azo2783 DNA repair system specific for alkylated DNA YP_004511883.1 PFAM: CHAD; KEGG: hau:Haur_4676 CHAD domain-containing protein YP_004511884.1 KEGG: mca:MCA2273 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_004511885.1 KEGG: pat:Patl_2401 hypothetical protein YP_004511886.1 manually curated; KEGG: hypothetical protein YP_004511887.1 PFAM: Nucleoside-specific channel-forming protein, Tsx-like; KEGG: gem:GM21_3976 nucleoside-specific channel-forming protein Tsx YP_004511888.1 PFAM: Acetohydroxy acid isomeroreductase, catalytic; Acetohydroxy acid isomeroreductase C-terminal; TIGRFAM: Acetohydroxy acid isomeroreductase; HAMAP: Ketol-acid reductoisomerase; KEGG: sde:Sde_2539 ketol-acid reductoisomerase YP_004511889.1 TIGRFAM: Acetolactate synthase, small subunit; KEGG: mca:MCA2271 acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit, C-terminal; Amino acid-binding ACT YP_004511890.1 TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; KEGG: mca:MCA2270 acetolactate synthase, large subunit, biosynthetic type; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, central region; Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_004511891.1 PFAM: ABC transporter-like; KEGG: alv:Alvin_1691 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004511892.1 PFAM: Bacterial transport system permease; KEGG: tra:Trad_1157 transport system permease YP_004511893.1 PFAM: Periplasmic binding protein; KEGG: pla:Plav_0182 periplasmic binding protein YP_004511894.1 PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: vex:VEA_001358 pyridoxamine 5'-phosphate oxidase-related heme iron utilization protein YP_004511895.1 PFAM: Haemin-degrading; KEGG: mxa:MXAN_1318 hemin transport protein HemS YP_004511896.1 KEGG: neu:NE0726 hypothetical protein; TIGRFAM: variant PEP-CTERM exosortase signal; PFAM: PEP-CTERM bacterial YP_004511897.1 KEGG: mep:MPQ_1703 hypothetical protein YP_004511898.1 KEGG: smt:Smal_0645 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TIGRFAM: TonB-dependent haemoglobin/transferrin/lactoferrin receptor; TonB-dependent haem/haemoglobin receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004511900.1 PFAM: Hemin uptake protein hemP; KEGG: nhl:Nhal_1730 hypothetical protein YP_004511901.1 KEGG: nwa:Nwat_0692 hypothetical protein YP_004511902.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: hba:Hbal_2657 transcriptional regulator, LysR family YP_004511903.1 PFAM: Redoxin; KEGG: hoh:Hoch_6651 redoxin domain protein YP_004511904.1 KEGG: pmy:Pmen_2351 glutathione reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004511905.1 KEGG: nhl:Nhal_1811 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase YP_004511906.1 PFAM: Metallophosphoesterase; KEGG: metallophosphoesterase YP_004511907.1 KEGG: cytochrome c family protein YP_004511908.1 KEGG: nmu:Nmul_A2196 hypothetical protein YP_004511909.1 KEGG: swd:Swoo_3897 hypothetical protein YP_004511910.1 manually curated; KEGG: sbn:Sbal195_2286 hypothetical protein YP_004511912.1 KEGG: sdl:Sdel_0723 hypothetical protein YP_004511913.1 PFAM: PEP-CTERM bacterial YP_004511914.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; PAS fold-3; PAS fold-4; KEGG: dvm:DvMF_2350 diguanylate cyclase with PAS/PAC and GAF sensors; SMART: Diguanylate cyclase, predicted; PAS; PAC motif YP_004511916.1 KEGG: mca:MCA1546 hypothetical protein YP_004511918.1 TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: mmb:Mmol_2247 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase YP_004511919.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold; GAF; KEGG: pmy:Pmen_4029 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; GAF; PAC motif YP_004511920.1 PFAM: FeS cluster biogenesis; manually curated; TIGRFAM: FeS cluster insertion; KEGG: lch:Lcho_3448 iron-sulfur cluster assembly accessory protein; HAMAP: Iron--sulfur cluster insertion protein erpA YP_004511921.1 KEGG: tbd:Tbd_2145 hypothetical protein YP_004511922.1 PFAM: Protein of unknown function DUF2235; KEGG: geo:Geob_3189 hypothetical protein YP_004511923.1 KEGG: cja:CJA_2169 hypothetical protein YP_004511924.1 KEGG: slt:Slit_2427 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004511925.1 KEGG: ppg:PputGB1_1920 arylesterase; PFAM: Lipase, GDSL YP_004511926.1 PFAM: ABC transporter-like; KEGG: ppu:PP_2317 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004511927.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: pfl:PFL_4280 permease YP_004511928.1 KEGG: afr:AFE_2597 sigma-54 dependent transcriptional regulator, PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core YP_004511929.1 KEGG: gpb:HDN1F_28460 hypothetical protein; TIGRFAM: HDIG; PFAM: Metal-dependent hydrolase HDOD YP_004511930.1 KEGG: azl:AZL_014340 hypothetical protein; PFAM: Serine/threonine-protein kinase-like domain; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, subgroup, catalytic domain YP_004511931.1 KEGG: str:Sterm_1210 hypothetical protein YP_004511932.1 KEGG: rca:Rcas_0223 FHA domain-containing protein; PFAM: Forkhead-associated; von Willebrand factor, type A; SMART: Forkhead-associated; von Willebrand factor, type A YP_004511933.1 KEGG: bbe:BBR47_44770 hypothetical protein; PFAM: Protein phosphatase 2C, N-terminal; SMART: Protein phosphatase 2C-related YP_004511934.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; PAS fold-3; KEGG: cps:CPS_3258 sensory box protein; SMART: Diguanylate cyclase, predicted; PAC motif; PAS YP_004511935.1 PFAM: Nitrogen regulatory protein PII; KEGG: mca:MCA0977 nitrogen regulatory protein P-II YP_004511936.1 KEGG: mca:MCA0978 CzcA family heavy metal efflux protein; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein YP_004511937.1 KEGG: nmu:Nmul_A1640 secretion protein HlyD; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004511938.1 PFAM: Outer membrane efflux protein; KEGG: nmu:Nmul_A1641 outer membrane efflux protein YP_004511939.1 KEGG: mfa:Mfla_1164 hypothetical protein YP_004511940.1 PFAM: Protein of unknown function DUF45; KEGG: paa:Paes_0312 protein of unknown function DUF45 YP_004511941.1 PFAM: Uncharacterised conserved protein UCP021525; KEGG: cph:Cpha266_0283 hypothetical protein YP_004511942.1 PFAM: Protein of unknown function DUF2186; KEGG: cph:Cpha266_0284 hypothetical protein YP_004511943.1 KEGG: gca:Galf_2409 IstB domain-containing protein ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004511944.1 PFAM: Integrase, catalytic core; KEGG: hna:Hneap_1227 integrase catalytic region YP_004511945.1 PFAM: Integrase, catalytic core, phage; KEGG: integrase YP_004511947.1 KEGG: gbm:Gbem_4137 hypothetical protein YP_004511948.1 KEGG: hypothetical protein YP_004511949.1 KEGG: bte:BTH_I3137 hypothetical protein YP_004511950.1 KEGG: nhl:Nhal_2265 hypothetical protein YP_004511954.1 KEGG: eba:p1B277 transposase YP_004511956.1 PFAM: Type IV pilus assembly PilZ; KEGG: tgr:Tgr7_1211 glycosyltransferase-like protein YP_004511957.1 PFAM: FlgN; KEGG: har:HEAR1904 flagella synthesis protein FlgN YP_004511958.1 TIGRFAM: flagellar biosynthesis anti-sigma factor protein FlgM; PFAM: Anti-sigma-28 factor, FlgM YP_004511959.1 KEGG: nwa:Nwat_0433 flagella basal body P-ring formation protein FlgA; TIGRFAM: Flagella basal body P-ring formation protein FlgA; PFAM: SAF domain YP_004511960.1 KEGG: sse:Ssed_3089 response regulator receiver modulated CheW protein; PFAM: CheW-like protein; Signal transduction response regulator, receiver region; SMART: CheW-like protein; Signal transduction response regulator, receiver region YP_004511962.1 KEGG: tgr:Tgr7_1217 flagellar basal-body rod protein FlgB; TIGRFAM: Flagellar basal-body rod protein FlgB; PFAM: Flagellar basal body rod protein, N-terminal YP_004511963.1 KEGG: pat:Patl_3099 flagellar basal-body rod protein FlgC; TIGRFAM: Flagellar basal-body rod protein FlgC; PFAM: Protein of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal YP_004511964.1 PFAM: Flagellar hook capping protein; KEGG: nhl:Nhal_2326 flagellar hook capping protein YP_004511965.1 KEGG: xal:XALc_1425 flagellar hook protein FlgE; TIGRFAM: Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagellar basal body FlaE; Flagellar basal body rod protein, N-terminal; Protein of unknown function DUF1078, C-terminal YP_004511966.1 KEGG: hch:HCH_04478 flagellar basal body rod protein FlgF; TIGRFAM: Flagellar basal-body rod FlgF; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagellar basal body rod protein, N-terminal; Protein of unknown function DUF1078, C-terminal YP_004511967.1 KEGG: nwa:Nwat_2219 flagellar basal-body rod protein FlgG; TIGRFAM: Flagellar basal-body rod FlgG; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Protein of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal YP_004511968.1 KEGG: nhl:Nhal_2330 flagellar L-ring protein; HAMAP: Flagellar L-ring protein; PFAM: Flagellar L-ring protein YP_004511969.1 KEGG: nwa:Nwat_2217 flagellar P-ring protein; HAMAP: Flagellar P-ring protein; PFAM: Flagellar P-ring protein YP_004511970.1 TIGRFAM: Flagellar protein FlgJ type-2; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Flagellar protein FlgJ, N-terminal; KEGG: swd:Swoo_1605 flagellar rod assembly protein/muramidase FlgJ; SMART: Lysozyme subfamily 2 YP_004511971.1 KEGG: csa:Csal_1969 flagellar hook-associated protein; TIGRFAM: Flagellar hook-associated protein, FlgK; PFAM: Protein of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal YP_004511972.1 KEGG: net:Neut_0345 flagellar hook-associated protein FlgL; TIGRFAM: Flagellar hook-associated protein 3; PFAM: Flagellin, N-terminal YP_004511973.1 KEGG: nmr:Nmar_1252 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004511974.1 KEGG: nhl:Nhal_1117 2'-5' RNA ligase; TIGRFAM: 2',5' RNA ligase; PFAM: Phosphoesterase, HXTX YP_004511977.1 KEGG: bpy:Bphyt_0267 hypothetical protein YP_004511984.1 KEGG: rpf:Rpic12D_4470 hypothetical protein YP_004511986.1 KEGG: rpf:Rpic12D_4471 hypothetical protein YP_004511988.1 PFAM: Zonular occludens toxin; KEGG: rpf:Rpic12D_4473 zonular occludens toxin YP_004511989.1 PFAM: Transposase, IS4-like; KEGG: xbo:XBJ1_1885 transposase YP_004511990.1 KEGG: lch:Lcho_4144 transposase IS3/IS911 family protein; manually curated; PFAM: Transposase IS3/IS911 YP_004511991.1 TIGRFAM: Lytic murein transglycosylase B; KEGG: avn:Avin_08410 lytic murein transglycosylase B YP_004511992.1 KEGG: mca:MCA0104 rod shape-determining protein RodA; TIGRFAM: Rod shape-determining protein RodA; PFAM: Cell cycle protein YP_004511993.1 TIGRFAM: Penicillin-binding protein 2; KEGG: mca:MCA0103 penicillin-binding protein 2; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain YP_004511994.1 KEGG: mca:MCA0102 rod shape-determining protein MreD; TIGRFAM: Cell shape-determining protein MreD; PFAM: Cell shape-determining protein MreD YP_004511995.1 KEGG: mca:MCA0101 rod shape-determining protein MreC; TIGRFAM: Rod shape-determining protein MreC, subtype; PFAM: Rod shape-determining protein MreC YP_004511996.1 KEGG: mca:MCA0100 rod shape-determining protein MreB; TIGRFAM: Cell shape determining protein MreB/Mrl; PFAM: Cell shape determining protein MreB/Mrl YP_004511997.1 KEGG: aeh:Mlg_0168 aspartyl/glutamyl-tRNA amidotransferase subunit C; TIGRFAM: Glu-tRNAGln amidotransferase, C subunit; HAMAP: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C YP_004511998.1 TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase A subunit; HAMAP: Glutamyl-tRNA(Gln) amidotransferase A subunit; KEGG: nwa:Nwat_0481 glutamyl-tRNA(Gln) amidotransferase subunit A; PFAM: Amidase YP_004511999.1 TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase, B subunit; HAMAP: Glutamyl-tRNA(Gln) amidotransferase, B subunit; KEGG: tgr:Tgr7_0517 glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal; Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, central region; Asn/Gln amidotransferase YP_004512002.1 KEGG: hypothetical protein YP_004512003.1 KEGG: pca:Pcar_2899 hypothetical protein YP_004512004.1 PFAM: Peptidase S16, lon C-terminal; KEGG: mca:MCA0853 ATP-dependent protease YP_004512005.1 KEGG: meh:M301_2701 hypothetical protein YP_004512006.1 KEGG: hch:HCH_00502 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004512007.1 KEGG: dar:Daro_1943 TPR repeat-containing protein; TIGRFAM: PEP-CTERM system TPR-repeat lipoprotein, PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1 YP_004512008.1 SMART: DNA topoisomerase, type IIA, subunit A or C-terminal; TIGRFAM: DNA topoisomerase IV, subunit A, Gram-negative; KEGG: mca:MCA0821 DNA topoisomerase IV subunit A; PFAM: DNA topoisomerase, type IIA, subunit A or C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel YP_004512009.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold-3; PAS fold; KEGG: dar:Daro_1362 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; PAC motif YP_004512010.1 KEGG: tgr:Tgr7_1852 tRNA-dihydrouridine synthase A; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, YjbN; PFAM: tRNA-dihydrouridine synthase YP_004512011.1 PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; TIGRFAM: GTP cyclohydrolase I; HAMAP: GTP cyclohydrolase I; KEGG: mca:MCA1670 GTP cyclohydrolase I YP_004512012.1 PFAM: Ferrochelatase; TIGRFAM: Ferrochelatase; HAMAP: Ferrochelatase; KEGG: mca:MCA1671 ferrochelatase YP_004512013.1 KEGG: nwa:Nwat_1539 DNA mismatch repair protein MutS domain-containing protein; PFAM: DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal YP_004512014.1 PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; TIGRFAM: Phosphoribosylglycinamide formyltransferase 2; HAMAP: Phosphoribosylglycinamide formyltransferase 2; KEGG: mfa:Mfla_1255 phosphoribosylglycinamide formyltransferase 2 YP_004512015.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: mca:MCA2008 transglycosylase SLT domain-containing protein YP_004512016.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: dde:Dde_2455 metal dependent phosphohydrolase YP_004512017.1 TIGRFAM: Maf-like protein; HAMAP: Maf-like protein; KEGG: aha:AHA_2242 septum formation protein Maf; PFAM: Maf-like protein YP_004512018.1 PFAM: Protein of unknown function DUF177; KEGG: mca:MCA2006 hypothetical protein YP_004512019.1 TIGRFAM: Ribosomal protein L32p; HAMAP: Ribosomal protein L32p; KEGG: ribosomal protein L32; PFAM: Ribosomal protein L32p YP_004512020.1 TIGRFAM: Phospholipid biosynthesis protein, PlsX like; HAMAP: Phospholipid biosynthesis protein, PlsX like; KEGG: mca:MCA2004 glycerol-3-phosphate acyltransferase PlsX; PFAM: Fatty acid synthesis plsX protein YP_004512021.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH); HAMAP: Beta-ketoacyl-acyl carrier protein synthase III (FabH); KEGG: mca:MCA2003 3-oxoacyl-(acyl carrier protein) synthase III YP_004512022.1 TIGRFAM: Malonyl CoA-acyl carrier protein transacylase; KEGG: mca:MCA2002 malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase YP_004512023.1 KEGG: vfm:VFMJ11_1867 3-ketoacyl-(acyl-carrier-protein) reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004512024.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: vex:VEA_000797 GGDEF family protein; SMART: Diguanylate cyclase, predicted YP_004512025.1 TIGRFAM: Excinuclease ABC, A subunit; HAMAP: UvrABC system protein A; KEGG: mca:MCA2694 excinuclease ABC, A subunit; PFAM: ABC transporter-like YP_004512026.1 PFAM: Major facilitator superfamily MFS-1; KEGG: nwa:Nwat_3080 major facilitator superfamily protein YP_004512027.1 KEGG: nhl:Nhal_3825 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding YP_004512028.1 PFAM: Methyltransferase type 11; KEGG: pol:Bpro_1916 hypothetical protein YP_004512029.1 PFAM: Rhodanese-like; KEGG: mca:MCA1555 mercaptopyruvate sulfurtransferase; SMART: Rhodanese-like YP_004512030.1 PFAM: Protein of unknown function DUF2582; KEGG: hoh:Hoch_4960 ribonuclease R YP_004512032.1 KEGG: mca:MCA2972 lipoprotein A domain-containing protein; TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Rare lipoprotein A YP_004512033.1 KEGG: caa:Caka_0241 inositol monophosphatase; PFAM: Inositol monophosphatase YP_004512034.1 KEGG: caa:Caka_0240 protein of unknown function DUF227; PFAM: Protein of unknown function DUF227; SMART: CHK kinase-like YP_004512035.1 PFAM: Uncharacterised protein family UPF0227; KEGG: tgr:Tgr7_1294 protein of unknown function UPF0227 YP_004512036.1 TIGRFAM: Apolipoprotein N-acyltransferase; HAMAP: Apolipoprotein N-acyltransferase; KEGG: bba:Bd1278 carbon-nitrogen hydrolase: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004512037.1 PFAM: FAD dependent oxidoreductase; Monooxygenase, FAD-binding; KEGG: amr:AM1_6083 halogenase YP_004512038.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: gca:Galf_1932 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004512039.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: amr:AM1_2260 LysR family transcriptional regulator YP_004512040.1 PFAM: Ig; Prenyltransferase/squalene oxidase; KEGG: gur:Gura_3989 hypothetical protein YP_004512041.1 KEGG: mba:Mbar_A3399 hypothetical protein; TIGRFAM: RHS repeat-associated core domain; YD repeat; PFAM: Transglutaminase-like; YD repeat YP_004512043.1 PFAM: Exosortase EpsH-related; KEGG: srm:SRM_00719 conserved hypothetical protein, membrane YP_004512045.1 KEGG: dre:100330267 nucleoporin 214kDa-like; TIGRFAM: variant PEP-CTERM exosortase signal; PFAM: PEP-CTERM bacterial YP_004512046.1 PFAM: ABC transporter-like; KEGG: noc:Noc_0581 ABC transporter, ATPase subunit; SMART: ATPase, AAA+ type, core YP_004512047.1 KEGG: nhl:Nhal_2979 phosphate ABC transporter, inner membrane subunit PstA; TIGRFAM: Phosphate transport system permease 2; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004512048.1 KEGG: nhl:Nhal_2980 phosphate ABC transporter, inner membrane subunit PstC; TIGRFAM: Phosphate ABC transporter, permease PstC; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004512049.1 KEGG: nhl:Nhal_2981 phosphate binding protein; TIGRFAM: Phosphate binding protein; PFAM: Bacterial extracellular solute-binding, family 1 YP_004512050.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; KEGG: nhl:Nhal_1407 diguanylate cyclase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region YP_004512051.1 KEGG: nwa:Nwat_1159 hypothetical protein YP_004512052.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: nwa:Nwat_1158 TonB-dependent receptor plug YP_004512053.1 KEGG: glo:Glov_1112 hypothetical protein YP_004512054.1 KEGG: glo:Glov_1113 hypothetical protein YP_004512055.1 KEGG: dze:Dd1591_2450 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004512056.1 KEGG: nhl:Nhal_1401 thiamine pyrophosphate protein TPP binding domain protein; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, central region; Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_004512058.1 SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; GAF; Serine/threonine-protein kinase domain; PAS; PAC motif; Signal transduction response regulator, receiver region; TIGRFAM: PAS; KEGG: bpy:Bphyt_1683 PAS sensor protein; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; GAF; Serine/threonine-protein kinase-like domain; PAS fold; PAS fold-3; Signal transduction response regulator, receiver region YP_004512059.1 KEGG: azo:azo2858 hypothetical protein YP_004512060.1 KEGG: tmz:Tmz1t_2737 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-24 related; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004512061.1 KEGG: sco:SCO3452 methyltransferase; PFAM: Methyltransferase type 11 YP_004512062.1 PFAM: Protein of unknown function DUF2279, periplasmic lipoprotein; KEGG: neu:NE1833 hypothetical protein YP_004512063.1 KEGG: mca:MCA2123 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase YP_004512064.1 PFAM: ABC transporter-like; KEGG: pmy:Pmen_1919 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004512065.1 PFAM: ABC-2 type transporter; KEGG: mca:MCA2121 ABC transporter, permease YP_004512066.1 KEGG: alv:Alvin_0882 hypothetical protein YP_004512067.1 SMART: Protein-tyrosine phosphatase, catalytic; KEGG: alv:Alvin_0881 dual specificity protein phosphatase YP_004512068.1 PFAM: Ribose 5-phosphate isomerase; TIGRFAM: Ribose 5-phosphate isomerase; HAMAP: Ribose-5-phosphate isomerase, subgroup; KEGG: mca:MCA0355 ribose-5-phosphate isomerase A YP_004512069.1 KEGG: mca:MCA0354 threonine dehydratase; TIGRFAM: Threonine dehydratase I; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Threonine dehydratase, C-terminal YP_004512070.1 KEGG: eba:ebA2989 hypothetical protein YP_004512071.1 TIGRFAM: PAS; PFAM: PAS fold-3; HAMP linker domain; PAS fold; KEGG: eba:ebA2987 two component sensor; SMART: PAC motif; PAS YP_004512072.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-4; PAS fold-3; KEGG: multi-sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif YP_004512073.1 KEGG: response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004512074.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; PAS fold-3; GAF; PAS fold; KEGG: neu:NE1700 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; PAS; PAC motif; GAF YP_004512075.1 PFAM: Uncharacterised protein family UPF0310; KEGG: mca:MCA0353 hypothetical protein YP_004512076.1 KEGG: dar:Daro_0966 type II secretion system protein E; PFAM: Type II secretion system protein E; Signal transduction response regulator, receiver region; General secretory system II, protein E, N-terminal; SMART: Signal transduction response regulator, receiver region YP_004512077.1 KEGG: dar:Daro_0967 sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004512078.1 KEGG: rcu:RCOM_1788050 hypothetical protein YP_004512079.1 KEGG: hch:HCH_04128 signal transduction protein; PFAM: Diguanylate phosphodiesterase, predicted; EAL C-terminal; SMART: Diguanylate phosphodiesterase, predicted YP_004512080.1 PFAM: Protein of unknown function DUF900, hydrolase-like; KEGG: cyt:cce_2617 hypothetical protein YP_004512081.1 PFAM: Transposase, IS66; KEGG: reu:Reut_C6183 transposase IS66 YP_004512082.1 PFAM: Transposase (), IS66 Orf2 like; KEGG: reu:Reut_C6378 IS66 Orf2 like YP_004512083.1 KEGG: pna:Pnap_1740 transposase YP_004512084.1 KEGG: maq:Maqu_1225 IstB ATP binding domain-containing protein; PFAM: IstB-like ATP-binding protein; IstB-like ATP binding N-terminal; SMART: ATPase, AAA+ type, core YP_004512085.1 PFAM: Transposase IS3/IS911; KEGG: pna:Pnap_2523 transposase IS3/IS911 family protein YP_004512086.1 SMART: ATPase, AAA+ type, core; manually curated; KEGG: pph:Ppha_0523 ABC transporter related; PFAM: ABC transporter-like YP_004512087.1 KEGG: glo:Glov_3386 hypothetical protein YP_004512088.1 KEGG: dfe:Dfer_3363 N-acylneuraminate-9-phosphate synthase; PFAM: N-acetylneuraminic acid synthase, N-terminal; SAF domain YP_004512089.1 TIGRFAM: UDP-N-acetylglucosamine 2-epimerase,UDP-hydrolysing; KEGG: rpb:RPB_1535 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_004512090.1 KEGG: gka:GK3120 acylneuraminate cytidylyltransferase; PFAM: Acylneuraminate cytidylyltransferase YP_004512091.1 TIGRFAM: N-acetyl sugar amidotransferase; KEGG: lpa:lpa_01155 LPS biosynthesis protein, PseA-like protein YP_004512092.1 PFAM: Methyltransferase type 12; KEGG: cpi:Cpin_1269 methyltransferase type 12 YP_004512093.1 PFAM: Methyltransferase type 11; KEGG: dfe:Dfer_3803 methyltransferase type 12 YP_004512094.1 PFAM: Asparagine synthase; Glutamine amidotransferase, class-II; manually curated; KEGG: nde:NIDE2868 asparagine synthase; TIGRFAM: Asparagine synthase, glutamine-hydrolyzing YP_004512096.1 PFAM: Methyltransferase type 12; KEGG: ter:Tery_1348 methyltransferase type 11 YP_004512097.1 PFAM: Asparagine synthase; Glutamine amidotransferase, class-II; KEGG: gfo:GFO_0573 asparagine synthetase [glutamine-hydrolyzing] YP_004512098.1 KEGG: pph:Ppha_0531 histidine biosynthesis protein; manually curated; PFAM: Histidine biosynthesis YP_004512099.1 TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; HAMAP: Imidazole glycerol phosphate synthase, subunit H; KEGG: lpa:lpa_01157 glutamine amidotransferase; PFAM: Glutamine amidotransferase class-I, C-terminal YP_004512100.1 PFAM: Membrane bound O-acyl transferase, MBOAT; KEGG: tmz:Tmz1t_3262 membrane bound O-acyl transferase MBOAT family protein YP_004512101.1 KEGG: cno:NT01CX_1555 hypothetical protein YP_004512102.1 PFAM: Membrane bound O-acyl transferase, MBOAT; KEGG: dfe:Dfer_1037 membrane bound O-acyl transferase MBOAT family protein YP_004512103.1 KEGG: dfe:Dfer_1038 hypothetical protein YP_004512104.1 KEGG: glo:Glov_3385 radical SAM domain protein YP_004512105.1 PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; KEGG: aha:AHA_4154 hypothetical protein YP_004512106.1 KEGG: wsu:WS2182 adenylylsulfate kinase; manually curated; PFAM: Adenylylsulphate kinase, C-terminal YP_004512107.1 KEGG: hje:HacjB3_06700 hypothetical protein YP_004512108.1 PFAM: Methyltransferase type 11; KEGG: fal:FRAAL2062 3-demethylubiquinone-9 3-O-methyltransferase YP_004512109.1 PFAM: Glutamine amidotransferase class-I, C-terminal; KEGG: pfo:Pfl01_5513 glutamine amidotransferase class-I YP_004512110.1 PFAM: Nucleotidyl transferase; KEGG: hha:Hhal_0773 nucleotidyl transferase YP_004512111.1 KEGG: mpi:Mpet_0778 CDP-alcohol phosphatidyltransferase YP_004512112.1 KEGG: gur:Gura_2346 lipopolysaccharide biosynthesis protein-like protein YP_004512113.1 KEGG: gbm:Gbem_2571 hypothetical protein YP_004512114.1 PFAM: Methyltransferase type 11; KEGG: glo:Glov_3377 methyltransferase type 11 YP_004512115.1 KEGG: gbm:Gbem_2570 aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase YP_004512116.1 KEGG: glo:Glov_3376 glycosyl transferase 2 YP_004512117.1 TIGRFAM: Methyltransferase FkbM; KEGG: mtb:TBMG_02463 hypothetical protein YP_004512118.1 PFAM: Glycosyl transferase, family 2; KEGG: sli:Slin_4932 glycosyl transferase 2 YP_004512119.1 KEGG: vsp:VS_0225 lipopolysaccharide biosynthesis O-acetyl transferase WbbJ YP_004512120.1 PFAM: Glycosyl transferase, group 1; KEGG: rfr:Rfer_1259 glycosyl transferase, group 1 YP_004512121.1 PFAM: Glycosyl transferase, family 2; KEGG: net:Neut_0179 glycosyl transferase YP_004512122.1 PFAM: Polysaccharide biosynthesis protein; KEGG: meh:M301_1234 polysaccharide biosynthesis protein YP_004512123.1 KEGG: aci:ACIAD0083 polysaccharide polymerase YP_004512124.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: nhl:Nhal_3621 NAD-dependent epimerase/dehydratase YP_004512125.1 PFAM: Glycosyl transferase, family 4, conserved region; KEGG: pst:PSPTO_1755 glycosyl transferase, group 4 family protein YP_004512126.1 PFAM: Polysaccharide biosynthesis protein CapD-like; KEGG: mca:MCA0903 polysaccharide biosynthesis protein YP_004512129.1 KEGG: cja:CJA_2434 von Willebrand factor type A domain protein; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A YP_004512130.1 PFAM: Polysaccharide deacetylase; KEGG: noc:Noc_1967 polysaccharide deacetylase YP_004512131.1 PFAM: Sulfotransferase; KEGG: hha:Hhal_1563 sulfotransferase YP_004512132.1 KEGG: tbd:Tbd_0297 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP03097, O-antigen ligase-related; PFAM: O-antigen ligase-related YP_004512133.1 PFAM: Polysaccharide biosynthesis protein; KEGG: nwa:Nwat_1744 polysaccharide biosynthesis protein YP_004512134.1 KEGG: pca:Pcar_0625 hypothetical protein YP_004512135.1 PFAM: Acyltransferase 3; KEGG: chu:CHU_0886 acyltransferase YP_004512136.1 PFAM: Glycosyl transferase, family 2; KEGG: hba:Hbal_2148 glycosyl transferase 2 YP_004512137.1 PFAM: Glycosyl transferase, family 2; KEGG: mei:Msip34_1830 glycosyl transferase 2 YP_004512138.1 PFAM: Glycosyl transferase, group 1; KEGG: azo:azo3262 glycosyltransferase YP_004512139.1 KEGG: neu:NE2159 TPR repeat-containing protein YP_004512140.1 KEGG: nhl:Nhal_3217 hypothetical protein YP_004512141.1 KEGG: nwa:Nwat_1758 hypothetical protein YP_004512142.1 TIGRFAM: Hydrolase, ortholog 2, exosortase system type 1 associated; KEGG: nwa:Nwat_1757 exosortase system type 1 associated YP_004512143.1 TIGRFAM: Hydrolase, ortholog 1, exosortase system type 1 associated; KEGG: nhl:Nhal_2163 hydrolase, exosortase system type 1 associated YP_004512144.1 PFAM: Glycosyl transferase, family 2; GtrA-like protein; KEGG: dak:DaAHT2_0384 glycosyl transferase 2 YP_004512145.1 KEGG: hypothetical protein YP_004512146.1 KEGG: noc:Noc_1958 hypothetical protein YP_004512147.1 TIGRFAM: Pyridoxal-dependent decarboxylase, exosortase system type 1 associated; KEGG: dar:Daro_2435 Orn/DAP/Arg decarboxylase 2; PFAM: Orn/DAP/Arg decarboxylase 2 YP_004512148.1 TIGRFAM: Acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; KEGG: noc:Noc_1956 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004512149.1 KEGG: nmu:Nmul_A2521 hypothetical protein; TIGRFAM: Exosortase 1; Exosortase, EpsH; Methanolan biosynthesis EpsI; PFAM: Exosortase EpsH-related YP_004512150.1 TIGRFAM: Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: amc:MADE_00967 mannose-1-phosphate guanylyltransferase; PFAM: Nucleotidyl transferase; Mannose-6-phosphate isomerase, type II, C-terminal YP_004512151.1 KEGG: mag:amb1094 Mg2+ and Co2+ transporters; Mg/Co/Ni transporter MgtE; TIGRFAM: Magnesium/cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA-like YP_004512152.1 KEGG: mca:MCA0993 Rrf2 family protein; TIGRFAM: SUF system FeS cluster assembly, Rtf2-type regulator; Transcriptional regulator, Rrf2; PFAM: Transcriptional regulator, Rrf2 YP_004512153.1 KEGG: mca:MCA0992 cysteine desulfurase activator complex subunit SufB; TIGRFAM: SUF system FeS cluster assembly, SufB; PFAM: SUF system FeS cluster assembly, SufBD YP_004512155.1 TIGRFAM: ATPase SufC, SUF system FeS cluster assembly; PFAM: ABC transporter-like; KEGG: mca:MCA0991 FeS assembly ATPase SufC; SMART: ATPase, AAA+ type, core YP_004512156.1 KEGG: mca:MCA0990 FeS assembly protein SufD; TIGRFAM: SUF system FeS cluster assembly, SufD; PFAM: SUF system FeS cluster assembly, SufBD YP_004512157.1 PFAM: Protein of unknown function DUF820; KEGG: nhl:Nhal_2835 protein of unknown function DUF820 YP_004512158.1 TIGRFAM: Cysteine desulfurase, SufS; KEGG: mca:MCA0989 selenocysteine lyase; PFAM: Aminotransferase, class V/Cysteine desulfurase YP_004512159.1 KEGG: reh:H16_B1516 iron sulfur cluster assembly protein (SufU); TIGRFAM: SUF system FeS cluster assembly, SufU scaffold; PFAM: NIF system FeS cluster assembly, NifU, N-terminal YP_004512160.1 KEGG: cts:Ctha_1195 hypothetical protein YP_004512161.1 KEGG: tgr:Tgr7_1199 hypothetical protein; HAMAP: Protein of unknown function DUF548; PFAM: Protein of unknown function DUF548 YP_004512162.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: mca:MCA0987 Rieske 2Fe-2S family protein YP_004512163.1 KEGG: gdj:Gdia_2373 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein YP_004512164.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: tkm:TK90_1591 cobyrinic acid ac-diamide synthase YP_004512165.1 PFAM: Flavoprotein; KEGG: gbe:GbCGDNIH1_0764 flavoprotein YP_004512166.1 PFAM: Dihydropteroate synthase, DHPS; KEGG: mca:MCA1245 pterin-binding domain-containing protein YP_004512167.1 KEGG: rva:Rvan_2618 hypothetical protein YP_004512168.1 TIGRFAM: Exonuclease VII, large subunit; HAMAP: Exodeoxyribonuclease 7 large subunit; KEGG: cja:CJA_2105 exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type YP_004512169.1 PFAM: Protein of unknown function DUF395, YeeE/YedE; KEGG: lch:Lcho_3803 protein of unknown function DUF395 YeeE/YedE YP_004512170.1 PFAM: Protein of unknown function DUF395, YeeE/YedE; KEGG: lpa:lpa_01093 predicted transporter component YP_004512171.1 KEGG: ppr:PBPRA1007 cation efflux family protein; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein YP_004512172.1 KEGG: mca:MCA1389 formate dehydrogenase, delta subunit YP_004512173.1 TIGRFAM: Formate dehydrogenase, subunit FdhD; HAMAP: Protein fdhD; KEGG: mca:MCA1390 formate dehydrogenase accessory protein FdhD; PFAM: Formate dehydrogenase, subunit FdhD YP_004512174.1 KEGG: mca:MCA1391 formate dehydrogenase, alpha subunit; TIGRFAM: Formate dehydrogenase, alpha subunit; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Ferredoxin; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Molydopterin dinucleotide-binding region YP_004512175.1 KEGG: mca:MCA1392 formate dehydrogenase, beta subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding YP_004512176.1 PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; KEGG: mca:MCA1393 formate dehydrogenase subunit gamma YP_004512177.1 PFAM: BFD-like [2Fe-2S]-binding region; KEGG: scl:sce1647 bacterioferritin-associated ferredoxin YP_004512178.1 PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: mca:MCA1643 peptidyl-prolyl cis-trans isomerase YP_004512179.1 PFAM: BolA-like protein; KEGG: mca:MCA1644 BolA protein YP_004512180.1 PFAM: YCII-related; KEGG: ttu:TERTU_2475 protein YciI YP_004512181.1 TIGRFAM: Intracellular septation protein A; HAMAP: Intracellular septation protein A; KEGG: intracellular septation protein A; PFAM: Intracellular septation protein A YP_004512183.1 PFAM: Protein of unknown function DUF1244; KEGG: sde:Sde_2363 deoxycytidine triphosphate deaminase YP_004512184.1 PFAM: Methyltransferase type 11; KEGG: mca:MCA1384 UbiE/COQ5 family methlytransferase YP_004512185.1 PFAM: Sporulation/cell division region, bacteria; KEGG: psm:PSM_A2142 hypothetical protein YP_004512187.1 PFAM: Integrase, catalytic core; KEGG: ppr:PBPRB1144 transposase YP_004512188.1 PFAM: Transposase IS3/IS911; KEGG: pna:Pnap_1740 transposase YP_004512189.1 KEGG: see:SNSL254_p_0173 rhs family protein; TIGRFAM: RHS repeat-associated core domain; YD repeat; PFAM: YD repeat YP_004512190.1 KEGG: psb:Psyr_3729 hypothetical protein YP_004512191.1 PFAM: RNA-directed DNA polymerase (reverse transcriptase); Group II intron, maturase-specific; KEGG: aca:ACP_3214 group II intron-encoded maturase YP_004512192.1 KEGG: tbd:Tbd_1967 hypothetical protein YP_004512193.1 KEGG: hch:HCH_04902 nucleoside-diphosphate-sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase YP_004512194.1 KEGG: prw:PsycPRwf_0249 UDP-glucose/GDP-mannose dehydrogenase; TIGRFAM: Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal YP_004512195.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dps:DP1549 TetR transcription regulator YP_004512196.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: mca:MCA1682 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_004512197.1 SMART: Excinuclease ABC, C subunit, N-terminal; TIGRFAM: Excinuclease ABC, C subunit; KEGG: mca:MCA1681 excinuclease ABC, C subunit; HAMAP: UvrABC system protein C; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; UvrB/UvrC protein YP_004512198.1 PFAM: Uracil-DNA glycosylase-like; KEGG: tgr:Tgr7_1908 hypothetical protein YP_004512199.1 KEGG: caa:Caka_2751 hypothetical protein YP_004512200.1 KEGG: nhl:Nhal_3163 hypothetical protein YP_004512201.1 PFAM: PspA/IM30; KEGG: nhl:Nhal_3164 PspA/IM30 family protein YP_004512202.1 KEGG: ppd:Ppro_3363 sigma-54 factor interaction domain-containing protein; PFAM: RNA polymerase sigma factor 54, interaction; SMART: ATPase, AAA+ type, core YP_004512203.1 KEGG: mes:Meso_3536 ubiquinol oxidase, subunit II; TIGRFAM: Cytochrome o ubiquinol oxidase subunit II; PFAM: COX aromatic rich; Cytochrome c oxidase subunit II C-terminal YP_004512204.1 KEGG: mes:Meso_3535 cytochrome c oxidase, subunit I; TIGRFAM: Cytochrome o ubiquinol oxidase, subunit I; PFAM: Cytochrome c oxidase, subunit I YP_004512205.1 KEGG: bmr:BMI_I47 cytochrome o ubiquinol oxidase subunit III; TIGRFAM: Cytochrome o ubiquinol oxidase, subunit III; PFAM: Cytochrome c oxidase, subunit III YP_004512206.1 PFAM: Cytochrome C oxidase subunit IV prokaryotic; KEGG: gbe:GbCGDNIH1_1273 cytochrome o ubiquinol oxidase CyoD YP_004512207.1 KEGG: dre:567029 ribosome binding protein 1 homolog (dog) YP_004512208.1 PFAM: Integrase, catalytic core; KEGG: ppr:PBPRB1144 transposase YP_004512209.1 KEGG: pna:Pnap_1740 transposase YP_004512211.1 PFAM: Transposase IS3/IS911; KEGG: pna:Pnap_1740 transposase YP_004512212.1 PFAM: Integrase, catalytic core; KEGG: ppr:PBPRB1144 transposase YP_004512213.1 PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; K Homology, type 1, subgroup; Ribosomal protein S1, RNA binding domain; TIGRFAM: Polyribonucleotide nucleotidyltransferase; HAMAP: Polyribonucleotide nucleotidyltransferase; KEGG: mca:MCA1309 polynucleotide phosphorylase/polyadenylase YP_004512214.1 KEGG: mca:MCA1310 ribosomal protein S15; TIGRFAM: Ribosomal protein S15, bacterial-type; PFAM: Ribosomal protein S15 YP_004512215.1 TIGRFAM: Pseudouridine synthase II, TruB, N-terminal, bacterial-type; HAMAP: tRNA pseudouridine synthase B; KEGG: csa:Csal_3072 tRNA pseudouridine synthase B; PFAM: Pseudouridine synthase II, TruB, N-terminal; Pseudouridine synthase II, TruB, subfamily 1, C-terminal, bacterial-type YP_004512216.1 TIGRFAM: Ribosome-binding factor A; HAMAP: Ribosome-binding factor A; KEGG: kva:Kvar_0522 ribosome-binding factor A; PFAM: Ribosome-binding factor A YP_004512217.1 KEGG: mca:MCA1315 translation initiation factor IF-2; TIGRFAM: Initiation factor 2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Initiation factor 2 associated region, bacterial; Translation initiation factor IF-2, N-terminal; Translation elongation factor EFTu/EF1A, domain 2 YP_004512218.1 KEGG: mca:MCA1316 transcription elongation factor NusA; TIGRFAM: Transcription termination factor NusA; Transcription termination factor NusA, C-terminal duplication; PFAM: Transcription factor NusA, N-terminal; Ribosomal protein S1, RNA binding domain YP_004512219.1 KEGG: maq:Maqu_3350 hypothetical protein; HAMAP: Uncharacterised protein family UPF0090, bacteria; PFAM: Uncharacterised protein family UPF0090 YP_004512220.1 KEGG: jan:Jann_2672 hypothetical protein YP_004512221.1 KEGG: jan:Jann_1850 hypothetical protein YP_004512222.1 PFAM: Toxic anion resistance; KEGG: kvu:EIO_2126 tellurite resistance protein YP_004512223.1 PFAM: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; KEGG: sil:SPO2985 hypothetical protein YP_004512224.1 KEGG: pap:PSPA7_5564 chemotaxis transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004512226.1 KEGG: cja:CJA_0189 hypothetical protein YP_004512227.1 KEGG: pat:Patl_2582 hypothetical protein YP_004512228.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; HAMP linker domain; PAS fold-4; KEGG: cja:CJA_0187 GGDEF domain protein; SMART: Diguanylate cyclase, predicted; PAS YP_004512229.1 PFAM: Methylene-tetrahydromethanopterin dehydrogenase, N-terminal; KEGG: bge:BC1002_3225 methylene-tetrahydromethanopterin dehydrogenase YP_004512230.1 KEGG: mca:MCA2120 Crp/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding YP_004512231.1 HAMAP: Fructose-1,6-bisphosphatase; KEGG: nhl:Nhal_0011 inositol phosphatase/fructose-16-bisphosphatase; PFAM: Fructose-1,6-bisphosphatase YP_004512232.1 PFAM: Nitroreductase-like; KEGG: dak:DaAHT2_0274 nitroreductase YP_004512233.1 KEGG: pct:PC1_1419 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004512234.1 PFAM: TonB-dependent receptor, plug; KEGG: nmu:Nmul_A0973 TonB-dependent receptor YP_004512235.1 PFAM: Amidohydrolase 1; KEGG: neu:NE2343 hypothetical protein YP_004512236.1 KEGG: mmw:Mmwyl1_3416 hypothetical protein YP_004512237.1 KEGG: lbf:LBF_2938 cAMP-binding protein YP_004512238.1 KEGG: dat:HRM2_20180 hypothetical protein YP_004512239.1 TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004512240.1 PFAM: UBA/THIF-type NAD/FAD binding fold; KEGG: tkm:TK90_2502 UBA/ThiF-type NAD/FAD binding protein YP_004512241.1 TIGRFAM: PEP-CTERM/exosortase system-associated acyltransferase; KEGG: nhl:Nhal_3259 hypothetical protein YP_004512242.1 PFAM: Integrase, catalytic core; KEGG: ppr:PBPRB1144 transposase YP_004512243.1 KEGG: pna:Pnap_1740 transposase YP_004512244.1 KEGG: app:CAP2UW1_3277 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase-like, catalytic; Sel1-like; SMART: Sel1-like YP_004512245.1 TIGRFAM: Signal transduction response regulator, PEP-CTERM system, PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; KEGG: tgr:Tgr7_2349 response regulator receiver protein; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_004512246.1 TIGRFAM: Signal transduction histidine kinase, PEP-CTERM system, PFAM: ATP-binding region, ATPase-like; KEGG: tkm:TK90_2497 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like YP_004512247.1 KEGG: bta:519225 cyclic nucleotide gated channel beta 3; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding YP_004512248.1 PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; KEGG: ttu:TERTU_4325 tetratricopeptide repeat domain protein YP_004512249.1 PFAM: Polysaccharide export protein; KEGG: tgr:Tgr7_2392 polysaccharide export protein YP_004512250.1 KEGG: nhl:Nhal_3244 polysaccharide chain length determinant protein, PEP-Cterm locus subfamily; TIGRFAM: PEP-CTERM locus polysaccharide chain length determinant; PFAM: Lipopolysaccharide biosynthesis YP_004512251.1 KEGG: dar:Daro_2399 exopolysaccharide biosynthesis protein YP_004512252.1 TIGRFAM: PEP-CTERM, conserved hypothetical protein CHP03016; KEGG: tbd:Tbd_0284 hypothetical protein YP_004512253.1 KEGG: noc:Noc_2016 ATPase; TIGRFAM: ATPase, secretion system, PEP-CTERM, predicted; SMART: ATPase, AAA+ type, core YP_004512254.1 TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: aeh:Mlg_0109 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_004512255.1 KEGG: rru:Rru_A3114 polysaccharide deacetylase; TIGRFAM: PEP-CTERM locus, polysaccharide deactylase; PFAM: Polysaccharide deacetylase YP_004512256.1 TIGRFAM: PEP-CTERM system-associated, FemAB-related; KEGG: noc:Noc_1980 hypothetical protein YP_004512257.1 KEGG: net:Neut_0898 glycosyl transferase, group 1; TIGRFAM: Sugar transferase, PEP-CTERM, Stp1; PFAM: Glycosyl transferase, group 1 YP_004512258.1 KEGG: nhl:Nhal_3237 sugar transferase, PEP-Cterm/EpsH1 system associated; TIGRFAM: Sugar transferase, PEP-CTERM, Stp2; PFAM: Glycosyl transferase, group 1 YP_004512259.1 TIGRFAM: Exosortase 1 system-associated amidotransferase 1; Asparagine synthase, glutamine-hydrolyzing; KEGG: nmu:Nmul_A2519 asparagine synthase, glutamine-hydrolyzing; PFAM: Asparagine synthase; Glutamine amidotransferase, class-II YP_004512262.1 KEGG: aeh:Mlg_0102 HPr kinase YP_004512263.1 KEGG: rfr:Rfer_0709 hypothetical protein YP_004512264.1 PFAM: Glycosyl transferase, group 1; KEGG: neu:NE0794 glycosyl transferase group 1 YP_004512265.1 PFAM: Glycosyl transferase, group 1; KEGG: rru:Rru_A3107 glycosyl transferase, group 1 YP_004512266.1 PFAM: Glycosyl transferase, group 1; KEGG: rru:Rru_A3096 glycosyl transferase, group 1 YP_004512267.1 PFAM: Asparagine synthase; KEGG: nhl:Nhal_3222 asparagine synthase (glutamine-hydrolyzing) YP_004512268.1 KEGG: mca:MCA1258 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00701; PFAM: Uncharacterised protein family UPF0093 YP_004512269.1 KEGG: nhl:Nhal_3343 hypothetical protein YP_004512270.1 KEGG: nwa:Nwat_0121 hypothetical protein YP_004512271.1 KEGG: noc:Noc_0133 ATP binding protein; TIGRFAM: Small GTP-binding protein; PFAM: Protein of unknown function, ATP binding YP_004512272.1 KEGG: noc:Noc_0134 hypothetical protein YP_004512273.1 PFAM: Dynein light chain-related; KEGG: nhl:Nhal_2891 roadblock/LC7 family protein YP_004512274.1 KEGG: nhl:Nhal_2890 PAS sensor protein; TIGRFAM: PAS; PFAM: PAS fold-3 YP_004512275.1 KEGG: nhl:Nhal_2889 ABC-type phosphate/phosphonate transport system periplasmic component YP_004512276.1 PFAM: Phosphoglycerate mutase; KEGG: mca:MCA1249 alpha-ribazole-5`-phosphate phosphatase CobC YP_004512277.1 KEGG: nhl:Nhal_3565 adenylate cyclase; PFAM: Adenylate cyclase, class-I YP_004512278.1 KEGG: cja:CJA_2880 hypothetical protein YP_004512279.1 PFAM: Type IV pilus assembly PilZ YP_004512280.1 KEGG: mca:MCA0181 hypothetical protein YP_004512283.1 KEGG: kse:Ksed_24250 addiction module toxin, RelE/StbE family; TIGRFAM: Addiction module toxin, RelE/StbE; PFAM: Plasmid stabilisation system YP_004512284.1 PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: gka:GKP08 type IIs modification methyltransferase YP_004512285.1 KEGG: sfr:Sfri_3141 hypothetical protein YP_004512286.1 manually curated; TIGRFAM: GHMP kinase group 1; KEGG: sfr:Sfri_3142 beta-ribofuranosylaminobenzene 5'-phosphate synthase; PFAM: GHMP kinase YP_004512287.1 KEGG: sfr:Sfri_3143 hypothetical protein YP_004512288.1 KEGG: ppr:PBPRA2809 hypothetical protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core YP_004512289.1 KEGG: nitrogen regulatory protein P-II YP_004512290.1 PFAM: Protein of unknown function DUF1538; KEGG: vsp:VS_2276 hypothetical protein YP_004512291.1 PFAM: Protein of unknown function DUF1538; KEGG: ttu:TERTU_3437 hypothetical protein YP_004512292.1 PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal; KEGG: msv:Mesil_2255 sodium/hydrogen exchanger YP_004512293.1 KEGG: mca:MCA1862 carbon-nitrogen family hydrolase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004512294.1 KEGG: mca:MCA1861 hypothetical protein; PFAM: Peptidyl-arginine deiminase, Porphyromonas-type YP_004512295.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: neu:NE0381 integral membrane protein, DUF6 YP_004512296.1 PFAM: ATP-grasp fold, DUF201-type; KEGG: gpb:HDN1F_14170 glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase) YP_004512297.1 KEGG: gpb:HDN1F_14160 hypothetical protein YP_004512298.1 KEGG: mmw:Mmwyl1_1842 GCN5-like N-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase YP_004512299.1 KEGG: mca:MCA0060 general secretion pathway protein B YP_004512300.1 KEGG: mca:MCA0061 general secretion pathway protein A; PFAM: Peptidoglycan binding-like; SMART: ATPase, AAA+ type, core YP_004512301.1 KEGG: mca:MCA2809 hypothetical protein YP_004512303.1 KEGG: cti:RALTA_B1045 hybrid sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region YP_004512304.1 KEGG: bge:BC1002_7111 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004512305.1 KEGG: bac:BamMC406_6781 hypothetical protein YP_004512307.1 KEGG: mca:MCA1860 DNA repair protein RecN; TIGRFAM: DNA recombination/repair protein RecN; PFAM: RecF/RecN/SMC protein, N-terminal YP_004512308.1 KEGG: mca:MCA1859 hypothetical protein; HAMAP: inorganic polyphosphate/ATP-NAD kinase; PFAM: ATP-NAD/AcoX kinase YP_004512309.1 KEGG: azl:AZL_d00810 glycoside hydrolase YP_004512310.1 manually curated; PFAM: Protein of unknown function DUF815; KEGG: hch:HCH_05795 ATPase; SMART: ATPase, AAA+ type, core YP_004512311.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: mca:MCA1826 hypothetical protein YP_004512312.1 KEGG: two component transcriptional regulator winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004512313.1 KEGG: integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain YP_004512314.1 KEGG: mca:MCA1714 surface protein-related protein YP_004512315.1 KEGG: mca:MCA1715 sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like YP_004512318.1 KEGG: sbn:Sbal195_3377 CRISPR-associated Cas1 family protein; TIGRFAM: CRISPR-associated protein Cas1, YPEST subtype; CRISPR-associated protein Cas1; PFAM: CRISPR-associated protein Cas1 YP_004512319.1 TIGRFAM: Helicase Cas3, CRISPR-associated, Yersinia-type; KEGG: abb:ABBFA_000982 CRISPR-associated helicase Cas3 YP_004512320.1 PFAM: CRISPR-associated protein Csy1; KEGG: abb:ABBFA_000983 hypothetical protein YP_004512321.1 KEGG: abb:ABBFA_000984 CRISPR-associated protein (Cas_Csy2) family protein; TIGRFAM: CRISPR-associated protein Csy2; PFAM: CRISPR-associated protein Csy2 YP_004512322.1 KEGG: abb:ABBFA_000985 CRISPR-associated protein (Cas_Csy3) family protein; TIGRFAM: CRISPR-associated protein Csy3; PFAM: CRISPR-associated protein Csy3 YP_004512323.1 KEGG: pin:Ping_1400 CRISPR-associated Csy4 family protein; TIGRFAM: CRISPR-associated protein Csy4; PFAM: CRISPR-associated protein Csy4 YP_004512325.1 KEGG: tgr:Tgr7_2083 undecaprenyl-phosphate galactose phosphotransferase; TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Undecaprenyl-phosphate glucose phosphotransferase, WcaJ; PFAM: Bacterial sugar transferase YP_004512326.1 PFAM: Polysaccharide export protein; Soluble ligand binding domain; KEGG: neu:NE2279 polysaccharide export protein YP_004512327.1 TIGRFAM: Exopolysaccharide synthesis protein; KEGG: neu:NE2280 chain length determinant protein; PFAM: Lipopolysaccharide biosynthesis YP_004512328.1 KEGG: syn:slr1074 hypothetical protein YP_004512329.1 PFAM: Polysaccharide biosynthesis protein; KEGG: sth:STH2704 polysaccharide biosynthesis protein YP_004512330.1 PFAM: Methyltransferase type 11; KEGG: gme:Gmet_0453 hypothetical protein YP_004512331.1 PFAM: Glycosyl transferase, family 2; KEGG: srm:SRM_00268 glycosyl transferase, family 2 YP_004512332.1 PFAM: Glycosyl transferase, family 2; KEGG: gka:GK3313 glycosyltransferase YP_004512333.1 PFAM: Glycosyl transferase, group 1; KEGG: rva:Rvan_3115 glycosyl transferase group 1 YP_004512334.1 PFAM: Glycosyl transferase, family 2; KEGG: afr:AFE_0082 O antigen biosynthesis rhamnosyltransferase YP_004512335.1 PFAM: Protein of unknown function DUF88; KEGG: rme:Rmet_3395 hypothetical protein YP_004512336.1 KEGG: sfu:Sfum_2044 LysM domain/BON superfamily protein; PFAM: Peptidoglycan-binding lysin domain; Transport-associated; SMART: Peptidoglycan-binding Lysin subgroup YP_004512337.1 PFAM: Protein of unknown function DUF2302; KEGG: hba:Hbal_0306 hypothetical protein YP_004512338.1 TIGRFAM: Exodeoxyribonuclease V, RecC subunit; KEGG: psb:Psyr_0680 exodeoxyribonuclease V, RecC subunit; PFAM: Exodeoxyribonuclease V, RecC subunit YP_004512340.1 PFAM: AMMECR1; KEGG: mca:MCA0071 hypothetical protein YP_004512341.1 KEGG: gur:Gura_1394 ATP-dependent RNA helicase DbpA; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004512342.1 KEGG: hch:HCH_03538 hypothetical protein; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal YP_004512343.1 PFAM: Haem peroxidase, animal; KEGG: neu:NE1238 oxygenase YP_004512344.1 KEGG: lic:LIC10551 hypothetical protein YP_004512345.1 KEGG: neu:NE1235 hypothetical protein YP_004512346.1 KEGG: nmu:Nmul_A0529 hypothetical protein YP_004512347.1 KEGG: nmu:Nmul_A0530 peroxidase YP_004512348.1 KEGG: nmu:Nmul_A0531 hypothetical protein YP_004512349.1 KEGG: lch:Lcho_4144 transposase IS3/IS911 family protein; manually curated; PFAM: Transposase IS3/IS911 YP_004512350.1 KEGG: hna:Hneap_1227 integrase catalytic region YP_004512351.1 KEGG: lch:Lcho_4144 transposase IS3/IS911 family protein; manually curated; PFAM: Transposase IS3/IS911 YP_004512352.1 KEGG: pna:Pnap_1740 transposase YP_004512355.1 KEGG: dac:Daci_1177 hypothetical protein YP_004512358.1 KEGG: mba:Mbar_A3399 hypothetical protein; TIGRFAM: RHS repeat-associated core domain; YD repeat; PFAM: YD repeat YP_004512359.1 PFAM: Transglutaminase-like; KEGG: ate:Athe_2571 transglutaminase domain-containing protein YP_004512361.1 KEGG: gme:Gmet_1475 YD repeat-containing protein YP_004512362.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: dar:Daro_1455 dinitrogenase iron-molybdenum cofactor biosynthesis YP_004512363.1 KEGG: afr:AFE_1502 ankyrin repeat protein/rhodanese-like domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_004512364.1 KEGG: ttu:TERTU_1535 hypothetical protein YP_004512365.1 KEGG: mca:MCA2818 electron transport complex, H subunit; HAMAP: Protein rnfH; PFAM: Uncharacterised protein family UPF0125 YP_004512366.1 TIGRFAM: Electron transport complex, RnfE; HAMAP: Electron transport complex protein rnfE; KEGG: mca:MCA2819 electron transport complex RsxE subunit; PFAM: Electron transport complex, Rnf/Nqr YP_004512367.1 KEGG: mca:MCA2820 electron transport complex, G subunit; TIGRFAM: Electron transport complex, RnfG; PFAM: FMN-binding YP_004512368.1 TIGRFAM: Electron transport complex, RnfD; HAMAP: Electron transport complex protein rnfD; KEGG: mca:MCA2821 electron transport complex, D subunit; PFAM: NADH-quinone reductase NQR2/RnfD YP_004512369.1 TIGRFAM: Electron transport complex, RnfC; HAMAP: Electron transport complex protein rnfC; KEGG: mca:MCA2822 electron transport complex, C subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup YP_004512370.1 TIGRFAM: Electron transport complex, RnfB; HAMAP: Electron transport complex, RnfB, subgroup; KEGG: mca:MCA2823 electron transport complex, B subunit; PFAM: Fe-S cluster; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup YP_004512372.1 TIGRFAM: Electron transport complex, RnfA; HAMAP: Electron transport complex protein rnfA; KEGG: mca:MCA2824 electron transport complex, A subunit; PFAM: Electron transport complex, Rnf/Nqr YP_004512373.1 TIGRFAM: Nitrogen fixation negative regulator NifL; PAS; PFAM: ATP-binding region, ATPase-like; PAS fold; KEGG: mca:MCA0763 sensory box histidine kinase; SMART: ATP-binding region, ATPase-like; PAC motif; PAS YP_004512374.1 TIGRFAM: Nif-specific regulatory protein; PFAM: RNA polymerase sigma factor 54, interaction; GAF; Helix-turn-helix, Fis-type; KEGG: mca:MCA0764 transcriptional regulator NifA; SMART: GAF; ATPase, AAA+ type, core YP_004512375.1 PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; KEGG: scl:sce5603 malate dehydrogenase YP_004512376.1 KEGG: slt:Slit_0877 hypothetical protein YP_004512377.1 KEGG: hel:HELO_3048 Mg++ transporter; TIGRFAM: Divalent cation transporter; PFAM: Magnesium transporter, MgtE intracellular region; Cystathionine beta-synthase, core; MgtE integral membrane region YP_004512379.1 KEGG: cvi:CV_1189 two-component system; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; Metal-dependent phosphohydrolase, HD region YP_004512380.1 KEGG: aha:AHA_2220 two-component system sensor protein; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region YP_004512381.1 KEGG: ttu:TERTU_2587 protein YhgI YP_004512383.1 PFAM: Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL; TIGRFAM: Nitrogenase iron protein NifH; HAMAP: Nitrogenase iron protein NifH; KEGG: dar:Daro_1415 nitrogenase iron protein subunit NifH YP_004512384.1 TIGRFAM: Nitrogenase molybdenum-iron protein alpha chain; Nitrogenase component 1, alpha chain; KEGG: psa:PST_1327 MoFe protein, alpha subunit; PFAM: Nitrogenase/oxidoreductase, component 1 YP_004512385.1 TIGRFAM: Nitrogenase molybdenum-iron protein beta chain; KEGG: ttu:TERTU_1539 nitrogenase molybdenum-iron protein beta chain; PFAM: Nitrogenase/oxidoreductase, component 1 YP_004512386.1 KEGG: alv:Alvin_1878 nitrogen fixation protein FixT; TIGRFAM: NifT/FixU; PFAM: NifT/FixU YP_004512387.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: azo:azo0542 FdxN protein YP_004512388.1 KEGG: ttu:TERTU_1542 hypothetical protein YP_004512389.1 PFAM: LRV FeS4 cluster; Leucine rich repeat variant; KEGG: avn:Avin_01440 nitrogen fixing leucine rich variant repeat 4Fe-4S cluster protein YP_004512390.1 KEGG: mca:MCA2833 hypothetical protein YP_004512391.1 PFAM: ABC transporter-like; ABC transporter, transmembrane region; KEGG: azo:azo3632 ABC transporter permease and ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004512392.1 PFAM: PEP-CTERM bacterial; KEGG: cmi:CMM_0897 hypothetical protein YP_004512393.1 PFAM: PEP-CTERM bacterial; KEGG: nmu:Nmul_A1190 hypothetical protein YP_004512394.1 KEGG: maq:Maqu_3450 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme, formylation region; MGS-like; TIGRFAM: AICARFT/IMPCHase bienzyme; HAMAP: Bifunctional purine biosynthesis protein purH; SMART: AICARFT/IMPCHase bienzyme, formylation region YP_004512395.1 PFAM: Helix-turn-helix, Fis-type; KEGG: tgr:Tgr7_0362 factor for inversion stimulation fis transcriptional activator-like protein YP_004512396.1 KEGG: lhk:LHK_03206 NifR3; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, NifR3; PFAM: tRNA-dihydrouridine synthase YP_004512397.1 KEGG: mca:MCA0127 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004512399.1 PFAM: Glutamine synthetase, catalytic region; KEGG: amr:AM1_0336 glutamine synthetase, type III YP_004512400.1 PFAM: Ion transport; KEGG: potassium voltage-gated channel protein YP_004512401.1 KEGG: nhl:Nhal_1232 hypothetical protein YP_004512402.1 KEGG: hel:HELO_3852 transcriptional regulator, MerR family; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004512403.1 KEGG: cyh:Cyan8802_3973 peroxiredoxin; PFAM: Glutathione peroxidase YP_004512405.1 PFAM: Redoxin; KEGG: cvi:CV_4257 thioredoxin YP_004512406.1 TIGRFAM: D-3-phosphoglycerate dehydrogenase; KEGG: mac:MA0592 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; Amino acid-binding ACT YP_004512407.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB, PSPase-like; KEGG: cbc:CbuK_0277 phosphoserine phosphatase; PFAM: Haloacid dehalogenase-like hydrolase YP_004512408.1 TIGRFAM: Protein of unknown function DUF28; HAMAP: Protein of unknown function DUF28; KEGG: mca:MCA1220 hypothetical protein; PFAM: Protein of unknown function DUF28 YP_004512409.1 PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: Crossover junction endodeoxyribonuclease RuvC; HAMAP: Crossover junction endodeoxyribonuclease RuvC; KEGG: mca:MCA1221 crossover junction endodeoxyribonuclease RuvC YP_004512410.1 TIGRFAM: Bacterial DNA recombination protein RuvA; HAMAP: Holliday junction ATP-dependent DNA helicase ruvA; KEGG: tgr:Tgr7_2235 Holliday junction DNA helicase RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; DNA helicase, Holliday junction RuvA type, domain III, C-terminal YP_004512411.1 SMART: ATPase, AAA+ type, core; TIGRFAM: DNA helicase, Holliday junction RuvB type; KEGG: lpp:lpp1534 Holliday junction DNA helicase RuvB; HAMAP: DNA helicase, Holliday junction RuvB type; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal YP_004512412.1 KEGG: mca:MCA1224 thioesterase; TIGRFAM: Tol-Pal system-associated acyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily YP_004512413.1 KEGG: mca:MCA1226 TolQ protein; TIGRFAM: Tol-Pal system, TolQ; PFAM: MotA/TolQ/ExbB proton channel YP_004512414.1 KEGG: mca:MCA1227 TolR protein; TIGRFAM: Biopolymer transport, TolR; PFAM: Biopolymer transport protein ExbD/TolR YP_004512415.1 KEGG: mca:MCA1228 TolA protein, TIGRFAM: Tol-Pal system, TolA; TonB, C-terminal; PFAM: Tol-Pal system, TolA YP_004512416.1 TIGRFAM: Tol-Pal system beta propeller repeat-containing protein, TolB; HAMAP: Tol-Pal system beta propeller repeat-containing protein, TolB; KEGG: mca:MCA1229 translocation protein TolB; PFAM: TolB, N-terminal; WD40-like Beta Propeller YP_004512417.1 KEGG: mca:MCA1230 OmpA family protein; TIGRFAM: Peptidoglycan-associated lipoprotein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal YP_004512418.1 KEGG: mca:MCA1231 hypothetical protein; TIGRFAM: Tol-Pal system, YbgF; PFAM: Tetratricopeptide TPR2 YP_004512419.1 PFAM: Radical SAM; KEGG: mca:MCA1232 radical activating enzyme family protein YP_004512420.1 KEGG: pfs:PFLU4904 transcriptional regulator; TIGRFAM: Exoenzyme S synthesis protein B/queuosine synthesis; PFAM: Queuosine synthesis-like YP_004512421.1 KEGG: ttu:TERTU_1840 methyl-accepting chemotaxis protein YP_004512422.1 KEGG: svo:SVI_2679 metallo-beta-lactamase YP_004512423.1 KEGG: mca:MCA1459 tRNA-i(6)A37 modification enzyme MiaB; PFAM: Methylthiotransferase, N-terminal; Radical SAM; Deoxyribonuclease/rho motif-related TRAM; manually curated; TIGRFAM: tRNA-i(6)A37 modification enzyme MiaB; Methylthiotransferase; SMART: Elongator protein 3/MiaB/NifB; HAMAP: tRNA-i(6)A37 modification enzyme MiaB YP_004512424.1 PFAM: PhoH-like protein; KEGG: mca:MCA1458 PhoH family protein YP_004512425.1 TIGRFAM: Uncharacterised protein family UPF0054; HAMAP: Uncharacterised protein family UPF0054; KEGG: pam:PANA_1139 YbeY; PFAM: Uncharacterised protein family UPF0054 YP_004512426.1 KEGG: mca:MCA1456 magnesium and cobalt efflux protein CorC; PFAM: Cystathionine beta-synthase, core; Transporter-associated region; SMART: Cystathionine beta-synthase, core YP_004512427.1 KEGG: dat:HRM2_43250 sensory box histidine kinase/response regulator; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region YP_004512428.1 KEGG: app:CAP2UW1_2790 hypothetical protein YP_004512429.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: rpf:Rpic12D_4602 TonB-dependent receptor YP_004512430.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; KEGG: nwa:Nwat_1160 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region YP_004512431.1 KEGG: mfa:Mfla_2206 zinc-binding alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like YP_004512432.1 KEGG: ebi:EbC_28460 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal YP_004512433.1 KEGG: gca:Galf_1685 type II and III secretion system protein YP_004512434.1 PFAM: Starch synthase catalytic region; Glycosyl transferase, group 1; TIGRFAM: Glycogen/starch synthases, ADP-glucose type; HAMAP: Glycogen/starch synthases, ADP-glucose type; KEGG: mca:MCA1476 glycogen synthase YP_004512435.1 KEGG: mca:MCA1475 glycogen branching enzyme; PFAM: Alpha-amylase, C-terminal all beta; Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic region; TIGRFAM: 1,4-alpha-glucan branching enzyme, core region; HAMAP: 1,4-alpha-glucan branching enzyme, core region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region YP_004512436.1 PFAM: Nucleotidyl transferase; TIGRFAM: Glucose-1-phosphate adenylyltransferase; HAMAP: Glucose-1-phosphate adenylyltransferase; KEGG: mca:MCA1474 glucose-1-phosphate adenylyltransferase YP_004512437.1 PFAM: Glycoside hydrolase, family 57, core; KEGG: tgr:Tgr7_2072 glycoside hydrolase, family 57 YP_004512438.1 TIGRFAM: Glycoside hydrolase, family 77; KEGG: mmb:Mmol_0831 4-alpha-glucanotransferase; PFAM: Glycoside hydrolase, family 77 YP_004512439.1 KEGG: mca:MCA0300 MxaJ protein; TIGRFAM: quinoprotein dehydrogenase-associated ABC transporter substrate-binding protein; SMART: Extracellular solute-binding protein, family 3 YP_004512440.1 TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; KEGG: mca:MCA0299 methanol dehydrogenase, large subunit, PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; PQQ-dependent enzyme, C-terminal YP_004512441.1 PFAM: Peptide methionine sulphoxide reductase MsrA; TIGRFAM: Peptide methionine sulphoxide reductase MsrA; HAMAP: Peptide methionine sulphoxide reductase MsrA; KEGG: cya:CYA_0467 methionine-S-sulfoxide reductase YP_004512442.1 PFAM: Heat shock protein Hsp33 protein; KEGG: nhl:Nhal_1877 HSP33 protein YP_004512443.1 KEGG: mca:MCA1710 hypothetical protein YP_004512444.1 PFAM: Nitroreductase-like; KEGG: mca:MCA2267 nitroreductase YP_004512445.1 PFAM: Integrase, catalytic core; KEGG: hna:Hneap_1227 integrase catalytic region YP_004512446.1 PFAM: Integrase, catalytic core; KEGG: ppr:PBPRB1144 transposase YP_004512447.1 KEGG: pna:Pnap_1740 transposase YP_004512448.1 KEGG: lhk:LHK_01799 probable integrase/recombinase YP_004512450.1 KEGG: app:CAP2UW1_2492 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal YP_004512451.1 PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: rfr:Rfer_0805 pirin-like YP_004512452.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: tmz:Tmz1t_3299 transcriptional regulator, LysR family YP_004512453.1 KEGG: ppd:Ppro_1221 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004512455.1 KEGG: mca:MCA0105 D-alanyl-D-alanine carboxypeptidase; PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A; Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal YP_004512456.1 KEGG: mca:MCA0106 D-amino acid aminotransferase, PFAM: Aminotransferase, class IV YP_004512457.1 KEGG: rpi:Rpic_0182 hypothetical protein; HAMAP: Protein of unknown function DUF493; PFAM: Protein of unknown function DUF493 YP_004512458.1 PFAM: Biotin/lipoate A/B protein ligase; TIGRFAM: Octanoyltransferase; HAMAP: Octanoyltransferase; KEGG: mca:MCA0109 lipoate-protein ligase B YP_004512459.1 KEGG: mca:MCA0110 lipoyl synthase; PFAM: Radical SAM; TIGRFAM: Lipoate synthase; HAMAP: Lipoate synthase; SMART: Elongator protein 3/MiaB/NifB YP_004512460.1 PFAM: Mechanosensitive ion channel MscS; KEGG: mca:MCA2608 mechanosensitive ion channel family protein YP_004512461.1 KEGG: rpf:Rpic12D_4296 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004512462.1 PFAM: Acriflavin resistance protein; KEGG: hse:Hsero_1521 cation/multidrug efflux pump transmembrane protein YP_004512463.1 PFAM: Acriflavin resistance protein; KEGG: rsl:RPSI07_mp1230 multidrug efflux system, subunit C YP_004512464.1 KEGG: hse:Hsero_1523 NodT family protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004512465.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: tgr:Tgr7_0559 succinylglutamate desuccinylase/aspartoacylase YP_004512466.1 TIGRFAM: Ribosomal protein S6; HAMAP: Ribosomal protein S6, bacterial-like; KEGG: mca:MCA2038 30S ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like YP_004512467.1 TIGRFAM: Ribosomal protein S18; HAMAP: 30S ribosomal protein S18; KEGG: mca:MCA2037 ribosomal protein S18; PFAM: Ribosomal protein S18 YP_004512468.1 KEGG: mca:MCA2036 hypothetical protein YP_004512469.1 TIGRFAM: Ribosomal protein L9, bacteria/chloroplast; HAMAP: Ribosomal protein L9, bacteria/chloroplast; KEGG: mca:MCA2035 ribosomal protein L9; PFAM: Ribosomal protein L9, C-terminal; Ribosomal protein L9, N-terminal YP_004512470.1 PFAM: NAD-dependent epimerase/dehydratase; TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; HAMAP: ADP-L-glycero-D-manno-heptose-6-epimerase; KEGG: pca:Pcar_0024 ADP-L-glycero-D-mannoheptose-6-epimerase YP_004512471.1 KEGG: tde:TDE1831 hypothetical protein YP_004512473.1 KEGG: noc:Noc_0575 hypothetical protein YP_004512475.1 PFAM: 3-demethylubiquinone-9 3-O-methyltransferase; KEGG: 3-demethylubiquinone-9 3-methyltransferase YP_004512477.1 KEGG: lch:Lcho_4144 transposase IS3/IS911 family protein; manually curated; PFAM: Transposase IS3/IS911 YP_004512478.1 KEGG: slt:Slit_0377 integron integrase; TIGRFAM: Integrase, integron-type; PFAM: Integrase, catalytic core, phage YP_004512480.1 PFAM: Integrase, catalytic core; KEGG: ppr:PBPRA2371 transposase YP_004512481.1 KEGG: pna:Pnap_1740 transposase YP_004512483.1 PFAM: Bacterial transferase hexapeptide repeat; KEGG: csa:Csal_0401 anhydrase 3 protein YP_004512484.1 KEGG: cpc:Cpar_0308 transmembrane protein YP_004512485.1 KEGG: gur:Gura_2275 hypothetical protein YP_004512486.1 KEGG: lch:Lcho_1349 NADH ubiquinone oxidoreductase 20 kDa subunit; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit YP_004512487.1 KEGG: lch:Lcho_1348 nickel-dependent hydrogenase large subunit; PFAM: Nickel-dependent hydrogenase, large subunit YP_004512488.1 KEGG: lch:Lcho_1347 hydrogenase maturation protease; TIGRFAM: Peptidase A31, hydrogen uptake protein; PFAM: Peptidase A31, hydrogen uptake protein YP_004512489.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold-3; PAS fold; KEGG: lch:Lcho_1346 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; PAC motif YP_004512490.1 KEGG: ppu:PP_4658 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004512491.1 KEGG: mca:MCA1335 chorismate--pyruvate lyase, HAMAP: Chorismate--pyruvate lyase; PFAM: Chorismate--pyruvate lyase YP_004512492.1 KEGG: dar:Daro_3620 hypothetical protein YP_004512493.1 PFAM: Patatin; KEGG: net:Neut_1317 patatin YP_004512494.1 KEGG: azo:azo3763 hypothetical protein YP_004512495.1 PFAM: Patatin; KEGG: azo:azo3762 patatin-like protein YP_004512496.1 KEGG: mca:MCA1289 hypothetical protein YP_004512497.1 KEGG: dar:Daro_3599 WD-40 repeat-containing protein; PFAM: WD40 repeat, subgroup; SMART: WD40 repeat YP_004512498.1 KEGG: dar:Daro_3600 hypothetical protein YP_004512499.1 KEGG: app:CAP2UW1_2370 tetratricopeptide TPR_2 repeat protein YP_004512500.1 PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; KEGG: mca:MCA1137 hydrogenase subunit YP_004512501.1 PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit; KEGG: mca:MCA1138 hydrogenase subunit YP_004512502.1 KEGG: mca:MCA1139 hydrogenase 4 subunit F; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase YP_004512503.1 KEGG: mca:MCA1140 hydrogenase subunit YP_004512504.1 KEGG: mca:MCA1141 hydrogenase subunit YP_004512505.1 KEGG: mca:MCA1142 hydrogenase 4 subunit B; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase YP_004512506.1 PFAM: Sulphate transporter; KEGG: mca:MCA2472 sulfate transporter family protein YP_004512507.1 KEGG: hypothetical protein YP_004512508.1 PFAM: Na/Pi-cotransporter; KEGG: mgm:Mmc1_0226 Na+/Pi-cotransporter YP_004512510.1 KEGG: mpt:Mpe_A2805 nickel responsive regulator; HAMAP: nickel-responsive regulator; PFAM: Transcription factor, NikR, nickel binding C-terminal; CopG-like DNA-binding YP_004512511.1 KEGG: amr:AM1_3961 hypothetical protein YP_004512512.1 KEGG: cyj:Cyan7822_5101 hypothetical protein YP_004512513.1 PFAM: Copper resistance protein CopC, core; KEGG: mca:MCA2170 copper resistance protein YP_004512514.1 KEGG: nwa:Nwat_3063 hypothetical protein YP_004512515.1 KEGG: bja:blr6985 hypothetical protein YP_004512517.1 KEGG: nhl:Nhal_0478 response regulator receiver; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004512518.1 KEGG: mmb:Mmol_1757 histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; SMART: ATP-binding region, ATPase-like YP_004512519.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: mpt:Mpe_A1512 TonB-dependent receptor YP_004512520.1 KEGG: oan:Oant_2438 HupE/UreJ protein YP_004512522.1 KEGG: psa:PST_2110 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004512523.1 KEGG: mca:MCA1787 hypothetical protein YP_004512524.1 PFAM: Cytochrome c, class I; KEGG: mca:MCA2395 cytochrome c family protein YP_004512525.1 PFAM: Cytochrome c oxidase, subunit I; KEGG: mca:MCA2396 cytochrome c oxidase, subunit I YP_004512526.1 PFAM: Cytochrome c oxidase subunit II C-terminal; KEGG: mca:MCA2397 cytochrome c oxidase, subunit II YP_004512527.1 KEGG: mca:MCA2399 cytochrome c oxidase, CbaD subunit YP_004512528.1 PFAM: Methyltransferase-16, KEGG: dar:Daro_0513 hypothetical protein YP_004512529.1 KEGG: pna:Pnap_2516 late embryogenesis abundant protein YP_004512530.1 PFAM: Aldehyde dehydrogenase; TIGRFAM: Gamma-glutamyl phosphate reductase GPR; HAMAP: Glutamate-5-semialdehyde dehydrogenase; KEGG: cja:CJA_0785 gamma-glutamyl phosphate reductase YP_004512531.1 PFAM: Cytidylyltransferase; TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase; Cytidyltransferase-related; HAMAP: nicotinate-nucleotide adenylyltransferase; KEGG: tkm:TK90_2128 nicotinate (nicotinamide) nucleotide adenylyltransferase YP_004512532.1 KEGG: aeh:Mlg_0405 iojap-like protein; TIGRFAM: Iojap-related protein; PFAM: Iojap-related protein YP_004512533.1 KEGG: maq:Maqu_3159 hypothetical protein YP_004512534.1 KEGG: maq:Maqu_3158 hypothetical protein YP_004512536.1 KEGG: pca:Pcar_1473 transposase YP_004512537.1 PFAM: RES; KEGG: gdj:Gdia_1686 RES domain protein YP_004512538.1 KEGG: gdj:Gdia_1685 hypothetical protein YP_004512539.1 KEGG: ttu:TERTU_1520 nitrogenase cofactor biosynthesis protein NifB; TIGRFAM: Nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; Radical SAM YP_004512540.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: slt:Slit_0836 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_004512541.1 KEGG: cyt:cce_0545 nitrogenase-associated protein; TIGRFAM: Nitrogenase-associated protein; PFAM: Arsenate reductase-like YP_004512542.1 PFAM: Flavodoxin/nitric oxide synthase; KEGG: dar:Daro_1451 beta-lactamase-like:flavodoxin/nitric oxide synthase YP_004512543.1 PFAM: Ferredoxin; KEGG: mca:MCA0760 ferredoxin, 2Fe-2S YP_004512544.1 PFAM: Ferredoxin; KEGG: alv:Alvin_3042 ferredoxin YP_004512545.1 PFAM: NifQ; KEGG: slt:Slit_0833 NifQ family protein YP_004512546.1 KEGG: dar:Daro_2497 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004512547.1 KEGG: rha:RHA1_ro01797 sulfite reductase [NADPH] flavoprotein alpha-component; PFAM: FAD-binding, type 1; Flavodoxin/nitric oxide synthase; Oxidoreductase FAD/NAD(P)-binding YP_004512548.1 KEGG: mfa:Mfla_2734 glutamate synthase (NADPH); PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal YP_004512549.1 KEGG: mca:MCA1754 monooxygenase, FAD-binding; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: FAD dependent oxidoreductase YP_004512550.1 KEGG: mca:MCA0565 protein-P-II uridylyltransferase; PFAM: PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase; Nucleotidyltransferase; Metal-dependent phosphohydrolase, HD region, subdomain; Amino acid-binding ACT; TIGRFAM: Protein-PII uridylyltransferase; HAMAP: Protein-PII uridylyltransferase; SMART: Metal-dependent phosphohydrolase, HD region YP_004512551.1 TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; KEGG: tgr:Tgr7_1158 methionine aminopeptidase; PFAM: Peptidase M24, structural domain YP_004512552.1 KEGG: mca:MCA0567 30S ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: Ribosomal protein S2 YP_004512553.1 TIGRFAM: Translation elongation factor EFTs/EF1B; HAMAP: Elongation factor Ts; KEGG: mca:MCA0568 elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal YP_004512554.1 KEGG: mca:MCA0569 uridylate kinase; TIGRFAM: Uridylate kinase, bacteria; PFAM: Aspartate/glutamate/uridylate kinase YP_004512555.1 TIGRFAM: Ribosome recycling factor; HAMAP: Ribosome recycling factor, bacterial-like; KEGG: mca:MCA0570 ribosome recycling factor; PFAM: Ribosome recycling factor YP_004512556.1 PFAM: Di-trans-poly-cis-decaprenylcistransferase-like; TIGRFAM: Di-trans-poly-cis-decaprenylcistransferase-like; HAMAP: Undecaprenyl pyrophosphate synthase; KEGG: mca:MCA0571 undecaprenyl diphosphate synthase YP_004512557.1 PFAM: Phosphatidate cytidylyltransferase; KEGG: mca:MCA0572 phosphatidate cytidylyltransferase YP_004512558.1 PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: mca:MCA0573 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_004512559.1 KEGG: mca:MCA0574 membrane-associated zinc metalloprotease, TIGRFAM: Peptidase M50, membrane-associated zinc metallopeptidase; PFAM: Peptidase M50; PDZ/DHR/GLGF YP_004512560.1 PFAM: Disulphide bond isomerase, DsbC/G, N-terminal; KEGG: mca:MCA0575 thiol:disulfide interchange protein DsbC YP_004512561.1 SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; TIGRFAM: DNA mismatch repair protein MutS, type 1; KEGG: mca:MCA0576 DNA mismatch repair protein MutS; HAMAP: DNA mismatch repair protein MutS, type 1; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, clamp YP_004512562.1 KEGG: pat:Patl_2849 beta-lactamase-like YP_004512563.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: nml:Namu_1568 endonuclease/exonuclease/phosphatase YP_004512564.1 KEGG: hch:HCH_06681 hypothetical protein YP_004512565.1 KEGG: tbd:Tbd_0356 5'-nucleotidase; PFAM: 5'-Nucleotidase, C-terminal; Metallophosphoesterase YP_004512566.1 KEGG: mmw:Mmwyl1_4413 phosphate uptake regulator PhoU; TIGRFAM: PhoU; PFAM: PhoU YP_004512567.1 KEGG: mca:MCA1194 methane monooxygenase, A subunit, alpha chain; PFAM: Methane/phenol/toluene hydroxylase YP_004512568.1 KEGG: msl:Msil_1263 methane monooxygenase; PFAM: Methane/phenol/toluene hydroxylase YP_004512569.1 PFAM: Monooxygenase component MmoB/DmpM; KEGG: mca:MCA1196 methane monooxygenase, B subunit YP_004512570.1 KEGG: mca:MCA1198 methane monooxygenase, A subunit, gamma chain; PFAM: Methane monooxygenase, gamma chain YP_004512571.1 KEGG: mca:MCA1199 methane monooxygenase, D subunit YP_004512572.1 KEGG: mca:MCA1200 methane monooxygenase, C subunit; PFAM: Oxidoreductase FAD-binding region; Ferredoxin; Oxidoreductase FAD/NAD(P)-binding YP_004512573.1 KEGG: mca:MCA1201 hypothetical protein YP_004512574.1 PFAM: Chaperonin Cpn60/TCP-1; KEGG: mca:MCA1202 chaperonin, 60 kDa subunit YP_004512575.1 KEGG: mca:MCA1205 sigma-54 dependent transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; GAF; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core YP_004512576.1 KEGG: avn:Avin_22770 hypothetical protein YP_004512577.1 PFAM: Methyltransferase type 12; KEGG: pin:Ping_2544 methyltransferase type 12 YP_004512578.1 KEGG: dps:DP0981 hypothetical protein; TIGRFAM: polyphosphate:nucleotide phosphotransferase, PPK2 family; PFAM: Polyphosphate kinase 2 YP_004512579.1 PFAM: Acriflavin resistance protein; KEGG: mca:MCA0178 AcrB/AcrD/AcrF family protein YP_004512580.1 KEGG: mca:MCA0177 hypothetical protein; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004512581.1 KEGG: mca:MCA0176 outer membrane efflux protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004512583.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: dat:HRM2_08980 hypothetical protein YP_004512585.1 KEGG: mca:MCA1928 hypothetical protein YP_004512586.1 TIGRFAM: DNA helicase, ATP-dependent, RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; DNA/RNA helicase, C-terminal; KEGG: csa:Csal_3245 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004512587.1 KEGG: alv:Alvin_2537 endoribonuclease L-PSP; TIGRFAM: YjgF-like protein; PFAM: Endoribonuclease L-PSP YP_004512588.1 SMART: Metal-dependent phosphohydrolase, HD region; TIGRFAM: RelA/SpoT protein; KEGG: mca:MCA2023 guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase; PFAM: RelA/SpoT; Metal-dependent phosphohydrolase, HD region, subdomain; TGS; Amino acid-binding ACT YP_004512589.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit; HAMAP: DNA-directed RNA polymerase, omega subunit; KEGG: hel:HELO_4404 DNA-directed RNA polymerase subunit omega; PFAM: RNA polymerase Rpb6 YP_004512590.1 PFAM: Peptidase M48, Ste24p; KEGG: mca:MCA1330 hypothetical protein YP_004512591.1 KEGG: tgr:Tgr7_2187 sulfur relay protein TusD/DsrE; TIGRFAM: Sulphur relay, TusD/DsrE; PFAM: Sulphur relay, DsrE-like protein YP_004512592.1 KEGG: hha:Hhal_1954 DsrE family protein; TIGRFAM: Sulphur relay, TusC/DsrF; PFAM: Sulphur relay, DsrE-like protein YP_004512593.1 KEGG: pap:PSPA7_2172 hypothetical protein YP_004512594.1 TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; KEGG: mca:MCA1781 BirA bifunctional protein; PFAM: Biotin/lipoate A/B protein ligase; Helix-turn-helix, type 11; Biotin protein ligase, C-terminal YP_004512595.1 TIGRFAM: Bordetella pertussis Bvg accessory factor; HAMAP: Type III pantothenate kinase; KEGG: noc:Noc_0189 pantothenate kinase; PFAM: Bordetella pertussis Bvg accessory factor YP_004512596.1 KEGG: mca:MCA1779 hypothetical protein YP_004512597.1 KEGG: response regulator receiver; PFAM: Signal transduction response regulator, receiver region; Type IV pilus assembly PilZ; SMART: Signal transduction response regulator, receiver region YP_004512598.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold; Signal transduction response regulator, receiver region; KEGG: hch:HCH_03588 signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; Signal transduction response regulator, receiver region YP_004512599.1 KEGG: cbe:Cbei_4814 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region YP_004512600.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; PAS fold-3; PAS fold; KEGG: pca:Pcar_0290 two component sensor histidine kinase; SMART: ATP-binding region, ATPase-like; PAS; PAC motif YP_004512601.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; Sporulation stage II, protein E C-terminal; PAS fold-3; KEGG: eba:ebA2147 hypothetical protein; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; Protein phosphatase 2C-related; PAC motif YP_004512603.1 KEGG: sus:Acid_5475 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004512604.1 KEGG: rbe:RBE_0056 RNA polymerase sigma factor RpoD; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2 YP_004512605.1 TIGRFAM: HflK; PFAM: Band 7 protein; KEGG: mca:MCA1981 HflK protein; SMART: Band 7 protein YP_004512606.1 TIGRFAM: HflC; PFAM: Band 7 protein; KEGG: mca:MCA1980 HflC protein; SMART: Band 7 protein YP_004512607.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Peptidase M41, FtsH; KEGG: mca:MCA1848 cell division protein FtsH; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular YP_004512609.1 PFAM: BLUF; Protein of unknown function DUF2495; KEGG: cpb:Cphamn1_0997 membrane protein YP_004512610.1 KEGG: nmu:Nmul_A1179 hypothetical protein YP_004512611.1 TIGRFAM: PAS; PFAM: PAS fold; KEGG: nmu:Nmul_A1787 PAS/PAC sensor protein; SMART: PAC motif; PAS YP_004512612.1 PFAM: Fatty acid hydroxylase; KEGG: nhl:Nhal_0450 fatty acid hydroxylase YP_004512613.1 PFAM: Oxidoreductase, molybdopterin binding; KEGG: hch:HCH_05912 sulfite oxidase subunit YedY YP_004512614.1 PFAM: Ferric reductase-like transmembrane component, N-terminal; KEGG: bpy:Bphyt_3607 sulfite oxidase subunit YedZ YP_004512615.1 PFAM: Domain of unknown function DUF1731, C-terminal; NAD-dependent epimerase/dehydratase; KEGG: maq:Maqu_1135 NAD-dependent epimerase/dehydratase YP_004512617.1 KEGG: mbu:Mbur_2305 deoxyribodipyrimidine photo-lyase type I; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal YP_004512618.1 PFAM: Lipocalin-like; KEGG: son:SO_1691 lipoprotein Blc YP_004512619.1 PFAM: Protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: sse:Ssed_2662 hypothetical protein YP_004512620.1 KEGG: lma:LmjF34.0690 hypothetical protein YP_004512621.1 PFAM: Integrase, catalytic core, phage; KEGG: dar:Daro_2526 phage integrase YP_004512622.1 PFAM: Protein of unknown function DUF1778; KEGG: bpa:BPP0379 hypothetical protein YP_004512623.1 PFAM: GCN5-related N-acetyltransferase; KEGG: gca:Galf_1887 GCN5-related N-acetyltransferase YP_004512624.1 KEGG: afe:Lferr_0836 hypothetical protein YP_004512625.1 PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: dol:Dole_0822 restriction modification system DNA specificity subunit YP_004512626.1 KEGG: afr:AFE_0684 type I restriction-modification system, M subunit; PFAM: DNA methylase, adenine-specific YP_004512627.1 PFAM: Protein of unknown function DUF559; KEGG: rpx:Rpdx1_1651 hypothetical protein YP_004512628.1 PFAM: Restriction endonuclease, type I, EcoEI, R subunit/Type III, Res subunit, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; KEGG: afr:AFE_0683 type I restriction-modification system, R subunit; SMART: DEAD-like helicase, N-terminal YP_004512629.1 KEGG: pfl:PFL_2118 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004512630.1 SMART: Histone-like bacterial DNA-binding protein; TIGRFAM: Integration host factor, alpha subunit; KEGG: cja:CJA_2524 integration host factor, alpha subunit; HAMAP: Integration host factor, alpha subunit; PFAM: Histone-like bacterial DNA-binding protein YP_004512631.1 TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; KEGG: mca:MCA0698 phenylalanyl-tRNA synthetase, beta subunit YP_004512632.1 TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; HAMAP: Phenylalanyl-tRNA synthetase alpha chain; KEGG: mca:MCA0697 phenylalanyl-tRNA synthetase subunit alpha; PFAM: Phenylalanyl-tRNA synthetase alpha chain; Phenylalanyl-tRNA synthetase, class II, N-terminal YP_004512633.1 TIGRFAM: Ribosomal protein L20; HAMAP: Ribosomal protein L20; KEGG: mca:MCA0696 50S ribosomal protein L20; PFAM: Ribosomal protein L20 YP_004512634.1 TIGRFAM: Ribosomal protein L35; HAMAP: Ribosomal protein L35; KEGG: mca:MCA0695 ribosomal protein L35; PFAM: Ribosomal protein L35 YP_004512635.1 PFAM: Translation initiation factor 3, C-terminal; Translation initiation factor 3, N-terminal; manually curated; TIGRFAM: Translation initiation factor 3; KEGG: pen:PSEEN1964 translation initiation factor IF-3; HAMAP: Translation initiation factor IF-3 YP_004512636.1 KEGG: mca:MCA0693 threonyl-tRNA synthetase; TIGRFAM: Threonyl-tRNA synthetase, class IIa; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Threonyl/alanyl tRNA synthetase, SAD; TGS; Anticodon-binding YP_004512637.1 PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; Cysteine-rich region, CCG; KEGG: mca:MCA1757 oxidoreductase YP_004512638.1 PFAM: FUN14; KEGG: FUN14 family protein YP_004512639.1 PFAM: Protein of unknown function DUF540; KEGG: mca:MCA1712 sulfate transport protein CysZ YP_004512640.1 PFAM: Initiation factor 2B related; TIGRFAM: translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase; Initiation factor 2B alpha/beta/delta; HAMAP: Methylthioribose-1-phosphate isomerase; KEGG: mca:MCA1974 initiation factor 2 subunit family protein YP_004512641.1 HAMAP: 5-methylthioadenosine/S-adenosylhomocysteine deaminase; KEGG: mca:MCA1273 N-ethylammeline chlorohydrolase; PFAM: Amidohydrolase 1 YP_004512642.1 KEGG: pau:PA14_12640 hypothetical protein YP_004512644.1 KEGG: pmy:Pmen_3078 hypothetical protein YP_004512645.1 PFAM: Transposase IS3/IS911; KEGG: azl:AZL_f00580 transposase YP_004512646.1 PFAM: Integrase, catalytic core; KEGG: aav:Aave_2937 integrase catalytic subunit YP_004512647.1 PFAM: Barstar (barnase inhibitor); KEGG: barstar (barnase inhibitor) YP_004512649.1 KEGG: cyt:cce_0035 hypothetical protein YP_004512650.1 KEGG: rmr:Rmar_2437 two component transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region YP_004512651.1 KEGG: xau:Xaut_0992 integral membrane sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004512652.1 KEGG: cyt:cce_0035 hypothetical protein YP_004512653.1 PFAM: DNA helicase, UvrD/REP type; KEGG: mca:MCA1037 DNA-dependent helicase II YP_004512654.1 KEGG: mca:MCA1038 hypothetical protein YP_004512655.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: tgr:Tgr7_0437 FxsA cytoplasmic membrane protein YP_004512656.1 PFAM: Divalent ion tolerance protein, CutA1; KEGG: noc:Noc_1056 CutA1 divalent ion tolerance protein YP_004512657.1 HAMAP: Thiol:disulfide interchange protein dsbD; KEGG: mca:MCA1041 DsbD family thiol:disulfide interchange protein; PFAM: Cytochrome c assembly protein, transmembrane region; Thioredoxin domain YP_004512658.1 PFAM: Redoxin; KEGG: nmu:Nmul_A2682 thioredoxin YP_004512659.1 PFAM: Dehydroquinase, class II; TIGRFAM: Dehydroquinase, class II; HAMAP: Dehydroquinase, class II; KEGG: pfl:PFL_0673 3-dehydroquinate dehydratase YP_004512660.1 KEGG: vpa:VP2880 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; TIGRFAM: Acetyl-CoA biotin carboxyl carrier; PFAM: Biotin/lipoyl attachment YP_004512661.1 TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase; KEGG: mca:MCA1046 acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal YP_004512662.1 TIGRFAM: Ribosomal protein L11 methyltransferase; HAMAP: Ribosomal protein L11 methyltransferase; KEGG: mca:MCA1047 ribosomal protein L11 methyltransferase; PFAM: Ribosomal L11 methyltransferase YP_004512663.1 KEGG: mca:MCA1048 hypothetical protein YP_004512664.1 KEGG: mca:MCA1049 hypothetical protein; PFAM: RNA cap guanine-N2 methyltransferase; SMART: Pseudouridine synthase/archaeosine transglycosylase YP_004512665.1 KEGG: mca:MCA2501 hypothetical protein YP_004512666.1 KEGG: nhl:Nhal_0830 outer membrane autotransporter barrel domain protein; TIGRFAM: Outer membrane autotransporter barrel; PFAM: Autotransporter beta-domain YP_004512668.1 KEGG: mca:MCA1947 hypothetical protein YP_004512669.1 KEGG: mca:MCA1946 lipoprotein YP_004512670.1 KEGG: mca:MCA1945 molybdopterin-guanine dinucleotide biosynthesis protein A; TIGRFAM: Molybdopterin-guanine dinucleotide biosynthesis protein A; HAMAP: Molybdopterin-guanine dinucleotide biosynthesis protein A YP_004512671.1 KEGG: nmu:Nmul_A2420 hypothetical protein YP_004512672.1 KEGG: nhl:Nhal_1351 (NiFe) hydrogenase maturation protein HypF; TIGRFAM: Hydrogenase maturation factor, HypF-type; PFAM: Sua5/YciO/YrdC, N-terminal; Acylphosphatase-like; Zinc finger, HypF-type YP_004512673.1 KEGG: alv:Alvin_2797 hydrogenase expression/formation protein HypE; TIGRFAM: Hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein YP_004512674.1 PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: neu:NE1374 hypothetical protein YP_004512675.1 PFAM: PilT protein, N-terminal; KEGG: alv:Alvin_0248 PilT protein domain-containing protein YP_004512676.1 KEGG: slt:Slit_2421 hydrogenase expression/formation protein HypD; TIGRFAM: Hydrogenase formation HypD protein; PFAM: Hydrogenase formation HypD protein YP_004512677.1 KEGG: app:CAP2UW1_0733 hydrogenase assembly chaperone HypC/HupF; TIGRFAM: Hydrogenase expression/formation protein, HupF/HypC; PFAM: Hydrogenase expression/formation protein, HupF/HypC YP_004512679.1 KEGG: pph:Ppha_2865 hypothetical protein YP_004512680.1 KEGG: pph:Ppha_0757 hypothetical protein YP_004512681.1 KEGG: rpe:RPE_1242 hydrogenase accessory protein HypB; TIGRFAM: Hydrogenase accessory protein HypB; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like YP_004512682.1 TIGRFAM: Hydrogenase nickel incorporation protein HypA/HybF; HAMAP: Hydrogenase nickel incorporation protein HypA/HybF; KEGG: slt:Slit_2425 hydrogenase nickel insertion protein HypA; PFAM: Hydrogenase nickel incorporation protein HypA/HybF YP_004512683.1 KEGG: mgm:Mmc1_2497 Ni,Fe-hydrogenase I large subunit YP_004512684.1 KEGG: azl:AZL_c01950 rubredoxin YP_004512685.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: bid:Bind_1157 rubredoxin-type Fe(Cys)4 protein YP_004512686.1 PFAM: HupH hydrogenase expression protein, C-terminal conserved region; KEGG: rva:Rvan_0971 HupH hydrogenase expression protein YP_004512687.1 KEGG: dal:Dalk_5111 hypothetical protein YP_004512688.1 KEGG: eba:ebA4007 CcdB-like toxin protein YP_004512689.1 PFAM: Post-segregation antitoxin CcdA; KEGG: neu:NE1077 hypothetical protein YP_004512690.1 PFAM: Hydrogenase-1 expression HyaE; KEGG: rva:Rvan_0970 hydrogenase-1 expression HyaE YP_004512691.1 KEGG: rva:Rvan_0969 hydrogenase assembly chaperone HypC/HupF; TIGRFAM: Hydrogenase expression/formation protein, HupF/HypC; PFAM: Hydrogenase expression/formation protein, HupF/HypC YP_004512692.1 KEGG: rva:Rvan_0968 hydrogenase expression/formation protein; TIGRFAM: Peptidase A31, hydrogenase expression/formation protein; Peptidase A31, hydrogen uptake protein; PFAM: Peptidase A31, hydrogen uptake protein YP_004512693.1 TIGRFAM: Nickel-dependent hydrogenase b-type cytochrome subunit; KEGG: tin:Tint_3075 Ni/Fe-hydrogenase, b-type cytochrome subunit YP_004512695.1 KEGG: rva:Rvan_0965 nickel-dependent hydrogenase large subunit; PFAM: Nickel-dependent hydrogenase, large subunit YP_004512696.1 TIGRFAM: [Ni-Fe]-hydrogenase, small subunit; Twin-arginine translocation pathway, signal sequence; KEGG: reh:PHG001 membrane-bound [NiFe] hydrogenase small subunit; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit YP_004512697.1 PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; KEGG: tbd:Tbd_2534 CobW protein YP_004512698.1 KEGG: cte:CT1526 Rab family protein; PFAM: MIRO-like; Toll-Interleukin receptor; SMART: Ras small GTPase, Rab type; Toll-Interleukin receptor YP_004512699.1 KEGG: pat:Patl_1501 peptidase-like YP_004512700.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: mca:MCA2321 TonB-dependent receptor YP_004512701.1 KEGG: mfa:Mfla_0709 hypothetical protein YP_004512702.1 PFAM: Protein of unknown function DUF1826; KEGG: mca:MCA2320 hypothetical protein YP_004512703.1 PFAM: Zinc/iron permease; KEGG: dly:Dehly_0476 zinc/iron permease YP_004512705.1 PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; KEGG: mmw:Mmwyl1_1446 cobalamin synthesis protein P47K YP_004512706.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: mca:MCA2321 TonB-dependent receptor YP_004512707.1 KEGG: mca:MCA2322 transctiptional regulator YP_004512708.1 KEGG: hch:HCH_04776 hypothetical protein YP_004512709.1 KEGG: mca:MCA1383 heat shock protein HtpX; HAMAP: protease htpX; PFAM: Peptidase M48, Ste24p; Peptidase M48B, HtpX peptidase N-terminal YP_004512710.1 KEGG: mba:Mbar_A2771 L-sorbosone dehydrogenase YP_004512711.1 TIGRFAM: Nucleoside diphosphate pyrophosphatase; KEGG: mca:MCA1477 hypothetical protein; PFAM: NUDIX hydrolase domain YP_004512712.1 KEGG: nmu:Nmul_A2674 two component LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal YP_004512713.1 PFAM: Integrase, catalytic core; KEGG: ppr:PBPRB1144 transposase YP_004512714.1 KEGG: pna:Pnap_1740 transposase YP_004512715.1 PFAM: Divalent ion symporter; KEGG: mca:MCA2058 transporter YP_004512716.1 KEGG: tcx:Tcr_0014 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00341; PFAM: Protein of unknown function DUF389 YP_004512717.1 KEGG: rpd:RPD_2508 hypothetical protein YP_004512718.1 PFAM: Conserved hypothetical protein CHP00730; KEGG: sun:SUN_1207 decarboxylase YP_004512720.1 PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; KEGG: hch:HCH_03679 hypothetical protein; SMART: Metal-dependent phosphohydrolase, HD region YP_004512722.1 manually curated; KEGG: mfa:Mfla_2597 hypothetical protein YP_004512723.1 KEGG: reh:H16_A0552 hypothetical protein YP_004512724.1 KEGG: ant:Arnit_2849 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004512725.1 KEGG: lpf:lpl2552 hypothetical protein; TIGRFAM: HI0933-like protein; PFAM: HI0933-like protein YP_004512726.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: nmu:Nmul_A1967 TetR family transcriptional regulator YP_004512727.1 KEGG: alv:Alvin_0868 rhodanese domain-containing protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_004512728.1 KEGG: dae:Dtox_4336 hypothetical protein YP_004512729.1 PFAM: Ferredoxin soy-like; KEGG: pdi:BDI_3075 hypothetical protein YP_004512730.1 KEGG: axy:AXYL_04215 pyridine nucleotide-disulfide oxidoreductase 5 YP_004512731.1 PFAM: Protein of unknown function DUF1641; KEGG: ctt:CtCNB1_1682 hypothetical protein YP_004512732.1 KEGG: nwa:Nwat_1635 hypothetical protein YP_004512733.1 KEGG: eli:ELI_06530 LexA repressor; TIGRFAM: Peptidase S24, LexA repressor; PFAM: Peptidase S24/S26A/S26B, conserved region; LexA DNA-binding region YP_004512734.1 TIGRFAM: Transcription-repair coupling factor; PFAM: Transcription-repair-coupling factor; Transcription factor CarD; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; KEGG: mca:MCA1864 transcription-repair coupling factor; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004512735.1 PFAM: YcgR; KEGG: app:CAP2UW1_0922 YcgR family protein YP_004512736.1 PFAM: Small multidrug resistance protein; KEGG: paa:Paes_0600 small multidrug resistance protein YP_004512737.1 TIGRFAM: Sulphur relay, TusB/DsrH; KEGG: hch:HCH_02546 hypothetical protein YP_004512738.1 KEGG: hiq:CGSHiGG_00525 dissimilatory sulfite reductase, desulfoviridin, gamma subunit; TIGRFAM: DsrC-like protein; PFAM: DsrC-like protein YP_004512739.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Ribosomal protein S12 methylthiotransferase RimO; Methylthiotransferase; KEGG: mca:MCA0082 MiaB-like tRNA modifying enzyme YliG; HAMAP: Ribosomal protein S12 methylthiotransferase RimO; PFAM: Methylthiotransferase, N-terminal; Radical SAM; Deoxyribonuclease/rho motif-related TRAM YP_004512740.1 KEGG: tcx:Tcr_1862 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004512741.1 KEGG: tcx:Tcr_1862 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004512742.1 KEGG: acr:Acry_3383 thiamine pyrophosphate binding domain-containing protein; PFAM: Thiamine pyrophosphate enzyme, central region; Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_004512743.1 KEGG: eba:p1B277 transposase YP_004512744.1 PFAM: Fatty acid cis-trans isomerase; KEGG: mca:MCA1806 fatty acid cis/trans isomerase YP_004512745.1 PFAM: Cation/H+ exchanger; KEGG: sua:Saut_2027 sodium/proton antiporter, CPA1 family YP_004512746.1 PFAM: Oxidoreductase FAD/NAD(P)-binding; KEGG: mca:MCA0335 hypothetical protein YP_004512747.1 KEGG: noc:Noc_2349 preprotein translocase subunit SecF; TIGRFAM: SecF protein; SecD/SecF/SecDF export membrane protein; PFAM: SecD/SecF/SecDF export membrane protein YP_004512748.1 KEGG: mca:MCA2041 TrkH family potassium uptake protein; TIGRFAM: Potassium uptake protein TrkH; PFAM: Cation transporter YP_004512749.1 KEGG: mca:MCA2985 PAP2 superfamily protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase YP_004512750.1 TIGRFAM: Conserved hypothetical protein CHP00661; KEGG: mca:MCA2984 hypothetical protein YP_004512751.1 KEGG: mca:MCA0080 hypothetical protein YP_004512752.1 TIGRFAM: Glycine cleavage H-protein, subgroup; HAMAP: Glycine cleavage H-protein; KEGG: pmy:Pmen_0332 glycine cleavage system protein H; PFAM: Glycine cleavage H-protein YP_004512753.1 PFAM: Diacylglycerol kinase, prokaryotic; KEGG: tmz:Tmz1t_1798 diacylglycerol kinase YP_004512754.1 KEGG: tgr:Tgr7_0173 PfkB domain protein; PFAM: Carbohydrate/purine kinase YP_004512755.1 KEGG: mca:MCA0046 MazG family protein; TIGRFAM: NTP pyrophosphohydrolase MazG, bacterial; PFAM: NTP pyrophosphohydrolase MazG, catalytic core YP_004512758.1 KEGG: saz:Sama_2843 hypothetical protein YP_004512759.1 manually curated; KEGG: sna:Snas_6402 hypothetical protein YP_004512760.1 manually curated YP_004512761.1 manually curated YP_004512762.1 KEGG: cpc:Cpar_0475 multiple antibiotic resistance (MarC)-related protein; TIGRFAM: Multiple antibiotic resistance (MarC)-related; PFAM: Multiple antibiotic resistance (MarC)-related YP_004512763.1 KEGG: pat:Patl_0614 hypothetical protein YP_004512764.1 KEGG: fjo:Fjoh_4853 hypothetical protein YP_004512765.1 KEGG: rpf:Rpic12D_3163 hypothetical protein YP_004512766.1 PFAM: Glycosyl transferase, family 28, C-terminal; KEGG: hch:HCH_03417 hypothetical protein YP_004512767.1 PFAM: Oligosaccharide biosynthesis protein Alg14 like; KEGG: hch:HCH_03418 glycosyltransferase YP_004512768.1 KEGG: mpt:Mpe_A0729 hypothetical protein YP_004512769.1 PFAM: Polysaccharide biosynthesis protein; KEGG: mpt:Mpe_A0730 polysaccharide transport protein YP_004512770.1 KEGG: acr:Acry_2668 hypothetical protein YP_004512771.1 KEGG: pla:Plav_1708 hypothetical protein YP_004512772.1 KEGG: pha:PSHAa1787 glycosyl transferase YP_004512773.1 PFAM: Bacterial transferase hexapeptide repeat; KEGG: rle:RL3644 polysaccharide acetyltransferase YP_004512774.1 PFAM: O-antigen ligase-related; KEGG: ppy:PPE_01126 hypothetical protein YP_004512775.1 KEGG: tbd:Tbd_1796 hypothetical protein YP_004512776.1 KEGG: mmb:Mmol_1794 chain length determinant protein tyrosine kinase EpsG; TIGRFAM: Tyrosine-protein kinase, chain length determinant protein EpsG; Exopolysaccharide synthesis protein YP_004512777.1 KEGG: mfa:Mfla_2025 lipopolysaccharide biosynthesis; TIGRFAM: Chain length determinant protein EpsF; PFAM: Lipopolysaccharide biosynthesis YP_004512778.1 PFAM: Polysaccharide export protein; Soluble ligand binding domain; KEGG: har:HEAR0714 polysaccharide export protein YP_004512779.1 KEGG: pat:Patl_1070 sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase, WcaJ; Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase YP_004512780.1 PFAM: SNARE associated Golgi protein; KEGG: tmz:Tmz1t_1822 SNARE associated Golgi protein YP_004512781.1 PFAM: Sulphate transporter; KEGG: mca:MCA2472 sulfate transporter family protein YP_004512782.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: alv:Alvin_2801 peroxiredoxin YP_004512783.1 KEGG: gpb:HDN1F_29390 HlyD family secretion protein; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004512784.1 PFAM: ABC transporter-like; Protein of unknown function DUF214, permase predicted; KEGG: pla:Plav_1100 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004512785.1 KEGG: pla:Plav_1099 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004512786.1 KEGG: ana:alr0568 hypothetical protein YP_004512787.1 KEGG: nwa:Nwat_2778 signal peptide protein YP_004512788.1 KEGG: tgr:Tgr7_1963 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004512789.1 KEGG: mag:amb0869 protein-tyrosine-phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight YP_004512790.1 PFAM: Dienelactone hydrolase; KEGG: mca:MCA1803 dienelactone hydrolase YP_004512791.1 SMART: DNA topoisomerase, type IIA, subunit A or C-terminal; TIGRFAM: DNA gyrase, subunit A; KEGG: mca:MCA1421 DNA gyrase, A subunit; PFAM: DNA topoisomerase, type IIA, subunit A or C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel YP_004512792.1 PFAM: Aminotransferase, class V/Cysteine desulfurase; TIGRFAM: Phosphoserine aminotransferase; HAMAP: Phosphoserine aminotransferase; KEGG: mca:MCA1420 phosphoserine aminotransferase YP_004512793.1 KEGG: alv:Alvin_2084 chorismate mutase; TIGRFAM: Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain; PFAM: Prephenate dehydratase; Chorismate mutase, type II; Amino acid-binding ACT YP_004512794.1 PFAM: Aminotransferase, class I/II; TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: pfs:PFLU1646 histidinol-phosphate aminotransferase YP_004512795.1 KEGG: mca:MCA1416 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase YP_004512796.1 PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; HAMAP: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; KEGG: pap:PSPA7_1965 bifunctional cyclohexadienyl dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase YP_004512797.1 PFAM: Cytidylate kinase region; TIGRFAM: Cytidylate kinase; HAMAP: Cytidylate kinase; KEGG: mca:MCA1414 cytidylate kinase YP_004512798.1 KEGG: mca:MCA1413 30S ribosomal protein S1; TIGRFAM: Ribosomal S1 synthesis/modification protein; PFAM: Ribosomal protein S1, RNA binding domain YP_004512799.1 KEGG: hha:Hhal_0562 integration host factor subunit beta; PFAM: Histone-like bacterial DNA-binding protein; manually curated; TIGRFAM: Integration host factor, beta subunit; SMART: Histone-like bacterial DNA-binding protein; HAMAP: Integration host factor, beta subunit YP_004512800.1 KEGG: app:CAP2UW1_1859 acetyl xylan esterase; manually curated; PFAM: Acetyl xylan esterase YP_004512801.1 KEGG: mgm:Mmc1_2519 esterase; manually curated; PFAM: esterase YP_004512802.1 KEGG: nhl:Nhal_0091 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004512803.1 PFAM: Acriflavin resistance protein; KEGG: noc:Noc_0201 acriflavin resistance protein YP_004512804.1 KEGG: mca:MCA0793 RNA-binding protein; PFAM: RNA recognition motif, RNP-1; SMART: RNA recognition motif, RNP-1 YP_004512805.1 KEGG: eok:G2583_3129 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004512806.1 KEGG: bcb:BCB4264_A3403 alkylphosphonate utilization operon protein PhnA; TIGRFAM: PhnA protein; PFAM: PhnA protein, C-terminal; PhnA protein, N-terminal YP_004512807.1 TIGRFAM: Queuosine biosynthesis protein; HAMAP: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; KEGG: tgr:Tgr7_2069 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein YP_004512808.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold-4; PAS fold; KEGG: cps:CPS_3258 sensory box protein; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; PAC motif YP_004512809.1 KEGG: bja:blr5281 two-component response regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004512810.1 KEGG: msl:Msil_2272 integral membrane sensor signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; HAMP linker domain; ATP-binding region, ATPase-like; SMART: HAMP linker domain YP_004512811.1 KEGG: pna:Pnap_2639 hypothetical protein YP_004512812.1 KEGG: mfa:Mfla_0366 hypothetical protein YP_004512813.1 KEGG: reu:Reut_A3268 beta-lactamase-like YP_004512814.1 TIGRFAM: Dihydrolipoamide succinyltransferase; KEGG: tgr:Tgr7_0078 dihydrolipoamide acetyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding YP_004512815.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component; KEGG: mca:MCA1952 2-oxoglutarate dehydrogenase E1 component; PFAM: Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component YP_004512816.1 KEGG: nhl:Nhal_0411 hypothetical protein YP_004512817.1 KEGG: mca:MCA1863 regulator protein, PFAM: Histone-like nucleoid-structuring protein H-NS; SMART: Histone-like nucleoid-structuring protein H-NS YP_004512818.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: mca:MCA0369 alpha/beta fold family hydrolase YP_004512819.1 PFAM: Peptidase M14, carboxypeptidase A; KEGG: bba:Bd2418 zinc carboxypeptidase-related protein YP_004512820.1 KEGG: tcx:Tcr_2021 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase YP_004512821.1 PFAM: Protein of unknown function DUF490; KEGG: tkm:TK90_0295 protein of unknown function DUF490 YP_004512822.1 PFAM: Bacterial surface antigen (D15); Surface antigen variable number; KEGG: tgr:Tgr7_0448 outer membrane protein, OMP85 family YP_004512823.1 KEGG: cpc:Cpar_0222 hypothetical protein YP_004512824.1 KEGG: mca:MCA0810 hypothetical protein; manually curated; TIGRFAM: Hopanoid biosynthesis associated RND transporter like protein HpnN YP_004512825.1 PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: hch:HCH_02510 sulfate permease YP_004512826.1 PFAM: UspA; KEGG: hch:HCH_02511 universal stress protein UspA-like nucleotide-binding protein YP_004512827.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; PAS fold-3; KEGG: tdn:Suden_1041 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; PAC motif YP_004512828.1 KEGG: mca:MCA2157 ribonuclease BN, TIGRFAM: Ribonuclease BN; PFAM: Ribonuclease BN-related; Transcriptional regulator, Rrf2 YP_004512829.1 PFAM: Mechanosensitive ion channel MscS; KEGG: wch:wcw_1073 mechanosensitive ion channel YP_004512830.1 PFAM: Peptidase, C-terminal, archaeal/bacterial; PEP-CTERM bacterial YP_004512831.1 KEGG: cph:Cpha266_1774 DEAD/DEAH box helicase domain-containing protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004512832.1 PFAM: Cytochrome oxidase assembly; KEGG: mca:MCA1778 cytochrome oxidase assembly protein YP_004512833.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: nwa:Nwat_0678 signal transduction protein YP_004512834.1 KEGG: lhk:LHK_01002 glycine cleavage T-protein (aminomethyl transferase); TIGRFAM: Folate-binding, YgfZ; PFAM: Glycine cleavage T-protein, N-terminal YP_004512836.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: dak:DaAHT2_1625 signal transduction protein YP_004512837.1 SMART: Diguanylate cyclase, predicted; GAF; TIGRFAM: Diguanylate cyclase, predicted; KEGG: tgr:Tgr7_3042 response regulator receiver protein; PFAM: Diguanylate cyclase, predicted; GAF YP_004512838.1 KEGG: gpb:HDN1F_18490 predicted GTPase, probable translation factor; TIGRFAM: Conserved hypothetical protein CHP00092; PFAM: Protein of unknown function DUF933; GTP-binding protein, HSR1-related YP_004512839.1 PFAM: Integrase, catalytic core, phage; KEGG: afr:AFE_0995 site-specific recombinase, phage integrase YP_004512840.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: nwa:Nwat_1158 TonB-dependent receptor plug YP_004512841.1 KEGG: mxa:MXAN_2304 cytochrome P450 family protein; PFAM: Cytochrome P450 YP_004512842.1 KEGG: cja:CJA_0757 signal transduction protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004512843.1 KEGG: cyn:Cyan7425_3699 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004512844.1 KEGG: nhl:Nhal_1406 hypothetical protein YP_004512846.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: hha:Hhal_0643 cobyrinic acid a,c-diamide synthase YP_004512847.1 KEGG: hha:Hhal_0642 hypothetical protein YP_004512848.1 KEGG: hdu:HD0969 hypothetical protein YP_004512849.1 KEGG: noc:Noc_0621 hypothetical protein YP_004512850.1 KEGG: hypothetical protein; TIGRFAM: integrating conjugative element protein, PFL_4669 family; PFAM: Protein of unknown function DUF1845 YP_004512852.1 KEGG: ara:Arad_7837 adenylate/guanylate cyclase; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004512854.1 KEGG: tau:Tola_1606 integrase catalytic region; manually curated; PFAM: Integrase, catalytic core YP_004512855.1 PFAM: IstB-like ATP-binding protein; KEGG: tau:Tola_1607 IstB domain protein ATP-binding protein YP_004512856.1 KEGG: rrs:RoseRS_4025 NB-ARC domain-containing protein; PFAM: WD40 repeat, subgroup; SMART: WD40 repeat YP_004512857.1 KEGG: lch:Lcho_4144 transposase IS3/IS911 family protein; manually curated; PFAM: Transposase IS3/IS911 YP_004512860.1 KEGG: nwa:Nwat_1520 PEBP family protein; TIGRFAM: YbhB/YbcL; PFAM: Phosphatidylethanolamine-binding protein PEBP YP_004512861.1 PFAM: Protein of unknown function DUF159; KEGG: cyj:Cyan7822_4818 hypothetical protein YP_004512862.1 PFAM: Resolvase, N-terminal; Resolvase, helix-turn-helix region; KEGG: ecv:APECO1_O1CoBM103 resolvase YP_004512863.1 KEGG: nhl:Nhal_3374 WGR domain protein; PFAM: WGR; SMART: WGR YP_004512865.1 PFAM: Transposase, IS4-like; KEGG: mac:MA1045 transposase YP_004512866.1 KEGG: nhl:Nhal_2861 CopG domain protein DNA-binding domain protein YP_004512867.1 KEGG: nhl:Nhal_2862 addiction module toxin, RelE/StbE family; TIGRFAM: Addiction module toxin, RelE/StbE; PFAM: Plasmid stabilisation system YP_004512868.1 KEGG: spl:Spea_2921 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB YP_004512869.1 PFAM: Transposase IS3/IS911; KEGG: azl:AZL_f00580 transposase YP_004512870.1 PFAM: Integrase, catalytic core; KEGG: psp:PSPPH_A0089 ISPsy21, transposase orfB YP_004512871.1 KEGG: gdj:Gdia_1685 hypothetical protein YP_004512872.1 KEGG: gdj:Gdia_1686 RES domain protein; manually curated; PFAM: RES YP_004512873.1 KEGG: swi:Swit_0155 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF1044 YP_004512874.1 KEGG: alv:Alvin_3149 transcriptional regulator, XRE family YP_004512875.1 KEGG: bxe:Bxe_A0224 type I restriction-modification system, M subunit; PFAM: DNA methylase, adenine-specific YP_004512876.1 PFAM: Protein of unknown function DUF1016; KEGG: rsc:RCFBP_11648 hypothetical protein YP_004512877.1 PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: spc:Sputcn32_2909 restriction modification system DNA specificity subunit YP_004512878.1 PFAM: Filamentation induced by cAMP/death on curing, related; KEGG: filamentation induced by camp protein fic YP_004512879.1 TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: app:CAP2UW1_1871 type I site-specific deoxyribonuclease, HsdR family; SMART: DEAD-like helicase, N-terminal YP_004512880.1 KEGG: tbd:Tbd_0353 hypothetical protein YP_004512882.1 PFAM: Exosortase EpsH-related; KEGG: srm:SRM_00719 conserved hypothetical protein, membrane YP_004512883.1 KEGG: nde:NIDE1715 hypothetical protein; TIGRFAM: YD repeat; PFAM: YD repeat YP_004512884.1 KEGG: mpi:Mpet_1589 YD repeat protein; TIGRFAM: YD repeat; PFAM: YD repeat YP_004512885.1 KEGG: mba:Mbar_A3399 hypothetical protein; TIGRFAM: RHS repeat-associated core domain; YD repeat; PFAM: Transglutaminase-like; YD repeat YP_004512887.1 KEGG: gme:Gmet_1475 YD repeat-containing protein YP_004512888.1 PFAM: Transposase IS3/IS911; KEGG: dac:Daci_3090 transposase IS3/IS911 family protein YP_004512889.1 PFAM: Transposase (), IS66 Orf2 like; KEGG: cti:pRALTA_0497 transposase IS66 Orf2 like protein YP_004512890.1 PFAM: Transposase, IS66; KEGG: reu:Reut_C6183 transposase IS66 YP_004512891.1 KEGG: tmz:Tmz1t_0978 hypothetical protein YP_004512893.1 KEGG: rso:RSc2620 hypothetical protein; TIGRFAM: DNA repair, RadC-like; PFAM: DNA repair, RadC-like YP_004512894.1 PFAM: Protein of unknown function DUF932; KEGG: ajs:Ajs_4210 hypothetical protein YP_004512895.1 KEGG: pnu:Pnuc_1692 hypothetical protein YP_004512896.1 KEGG: eta:ETA_pET350270 hypothetical protein YP_004512897.1 KEGG: shw:Sputw3181_1082 DNA-directed DNA polymerase; PFAM: DNA-repair protein, UmuC-like YP_004512898.1 PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: syn:sll5123 hypothetical protein YP_004512899.1 SMART: Exonuclease; Excinuclease ABC, C subunit, N-terminal; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: dar:Daro_1907 DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III; Excinuclease ABC, C subunit, N-terminal YP_004512900.1 PFAM: Protein of unknown function DUF159; KEGG: ava:Ava_3892 hypothetical protein YP_004512901.1 KEGG: avn:Avin_39840 hypothetical protein YP_004512903.1 KEGG: mgm:Mmc1_2003 Sel1 domain-containing protein; PFAM: Sel1-like; SMART: Sel1-like YP_004512904.1 KEGG: cco:CCC13826_0131 peptidoglycan associated lipoprotein; PFAM: Peptidase S41; SMART: Peptidase S41 YP_004512906.1 PFAM: Nucleotidyltransferase; KEGG: mbn:Mboo_0854 DNA polymerase beta subunit YP_004512907.1 PFAM: Fertility inhibition FinO-like; KEGG: bmj:BMULJ_05375 ProP effector YP_004512908.1 KEGG: noc:Noc_0628 PilL protein YP_004512909.1 KEGG: gpb:HDN1F_34980 hypothetical protein YP_004512910.1 TIGRFAM: integrating conjugative element protein, PFL_4693 family; KEGG: hso:HS_1747 hypothetical protein YP_004512911.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: noc:Noc_0630 lytic transglycosylase, catalytic YP_004512912.1 PFAM: DSBA oxidoreductase; KEGG: tgr:Tgr7_1053 hypothetical protein YP_004512913.1 PFAM: ParB-like nuclease; SMART: ParB-like nuclease YP_004512915.1 KEGG: eba:p1B277 transposase YP_004512917.1 KEGG: gem:GM21_1244 hypothetical protein YP_004512918.1 KEGG: tmz:Tmz1t_2283 hypothetical protein YP_004512919.1 manually curated YP_004512920.1 PFAM: Flavin reductase-like, FMN-binding; KEGG: tgr:Tgr7_1944 flavin reductase domain protein FMN-binding YP_004512921.1 PFAM: Integrase, catalytic core, phage; KEGG: gca:Galf_2491 integrase YP_004512922.1 TIGRFAM: integrating conjugative element protein, PFL_4695 family; KEGG: net:Neut_0099 hypothetical protein YP_004512923.1 TIGRFAM: conjugative coupling factor TraD, SXT/TOL subfamily; KEGG: noc:Noc_0632 hypothetical protein YP_004512924.1 PFAM: Transposase IS200-like; KEGG: eba:ebA563 transposition helper protein YP_004512925.1 KEGG: syf:Synpcc7942_0761 hypothetical protein YP_004512926.1 KEGG: cyn:Cyan7425_2057 leucine-rich repeat protein; PFAM: Leucine-rich repeat YP_004512927.1 KEGG: ant:Arnit_2460 heat shock protein DnaJ domain-containing protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal YP_004512928.1 PFAM: FRG domain; KEGG: pwa:Pecwa_1726 FRG domain protein YP_004512929.1 KEGG: noc:Noc_0640 hypothetical protein; TIGRFAM: Protein of unknown function, RAQPRD; PFAM: Protein of unknown function, RAQPRD YP_004512930.1 KEGG: noc:Noc_0641 hypothetical protein YP_004512931.1 TIGRFAM: integrating conjugative element membrane protein, PFL_4702 family; KEGG: noc:Noc_0642 hypothetical protein YP_004512932.1 TIGRFAM: conjugative transfer region protein, TIGR03750 family; KEGG: noc:Noc_0643 hypothetical protein YP_004512933.1 TIGRFAM: integrating conjugative element protein, PFL_4703 family; KEGG: noc:Noc_0644 hypothetical protein YP_004512934.1 TIGRFAM: integrating conjugative element protein, PFL_4704 family; KEGG: noc:Noc_0645 hypothetical protein YP_004512935.1 TIGRFAM: integrating conjugative element protein, PFL_4705 family; KEGG: noc:Noc_0646 hypothetical protein YP_004512936.1 TIGRFAM: conjugative transfer region lipoprotein, TIGR03751 family; KEGG: noc:Noc_0647 hypothetical protein YP_004512937.1 TIGRFAM: conjugative transfer ATPase, PFL_4706 family; KEGG: noc:Noc_0648 hypothetical protein YP_004512938.1 KEGG: noc:Noc_0650 hypothetical protein; TIGRFAM: integrating conjugative element protein, PFL_4709 family; PFAM: Protein of unknown function DUF1525 YP_004512939.1 PFAM: Integrase, catalytic core; KEGG: psp:PSPPH_A0089 ISPsy21, transposase orfB YP_004512940.1 KEGG: azl:AZL_f00580 transposase; manually curated; PFAM: Transposase IS3/IS911 YP_004512941.1 TIGRFAM: integrating conjugative element protein, PFL_4711 family; KEGG: noc:Noc_0652 hypothetical protein YP_004512943.1 KEGG: noc:Noc_0653 hypothetical protein YP_004512945.1 KEGG: eba:ebA436 hypothetical protein YP_004512947.1 KEGG: app:CAP2UW1_0602 inorganic pyrophosphatase YP_004512948.1 KEGG: tau:Tola_2455 relaxase; TIGRFAM: integrating conjugative element relaxase, PFGI-1 class; PFAM: Protein of unknown function, helicase/relaxase; Protein of unknown function DUF1528, C-terminal YP_004512950.1 KEGG: cyn:Cyan7425_3995 hypothetical protein YP_004512951.1 KEGG: mca:MCA1531 hypothetical protein YP_004512952.1 PFAM: Radical SAM; KEGG: mfa:Mfla_1266 radical SAM family protein YP_004512953.1 PFAM: Protein of unknown function DUF2130; KEGG: rfr:Rfer_0075 hypothetical protein YP_004512954.1 KEGG: cwo:Cwoe_4861 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: HTH transcriptional regulator, ArsR; Tetratricopeptide repeat YP_004512955.1 KEGG: cwo:Cwoe_4860 hypothetical protein YP_004512956.1 KEGG: rhi:NGR_b16700 WD-repeart protein, beta transducin-like protein YP_004512957.1 KEGG: mlo:mll5814 N-hydroxyarylamine O-acetyltransferase; PFAM: N-acetyltransferase YP_004512958.1 KEGG: cja:CJA_0650 hypothetical protein YP_004512959.1 PFAM: BLUF; KEGG: lxx:Lxx04275 photopigment and puc expression activator YP_004512960.1 KEGG: tbd:Tbd_1195 hypothetical protein; PFAM: Appr-1-p processing; SMART: Appr-1-p processing YP_004512961.1 PFAM: Methyltransferase type 12; KEGG: kko:Kkor_0489 methyltransferase-related protein YP_004512962.1 PFAM: Heat shock protein Hsp20; KEGG: aav:Aave_1292 heat shock protein HSP20 YP_004512963.1 PFAM: NUDIX hydrolase domain; KEGG: ote:Oter_2376 NUDIX hydrolase YP_004512964.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: abo:ABO_0054 TetR family transcriptional regulator YP_004512965.1 PFAM: Major facilitator superfamily MFS-1; KEGG: mca:MCA2465 lysophospholipid transporter LplT YP_004512966.1 PFAM: AMP-dependent synthetase/ligase; Phospholipid/glycerol acyltransferase; KEGG: nhl:Nhal_2321 AMP-dependent synthetase and ligase; SMART: Phospholipid/glycerol acyltransferase YP_004512967.1 PFAM: PEP-CTERM bacterial; KEGG: sus:Acid_6890 hypothetical protein YP_004512968.1 PFAM: Cell surface receptor IPT/TIG; KEGG: acp:A2cp1_3119 hypothetical protein YP_004512969.1 KEGG: sfu:Sfum_0766 type II secretion system protein E; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; SMART: ATPase, AAA+ type, core YP_004512970.1 KEGG: dar:Daro_0969 response regulator receiver; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004512971.1 KEGG: dak:DaAHT2_0232 hypothetical protein YP_004512972.1 KEGG: gca:Galf_0834 response regulator receiver modulated metal dependent phosphohydrolase; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004512973.1 TIGRFAM: Haemerythrin-like, metal-binding; PAS; PFAM: ATP-binding region, ATPase-like; PAS fold-3; Haemerythrin/HHE cation-binding motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: dar:Daro_0965 PAS:hemerythrin HHE cation binding region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAC motif; PAS YP_004512974.1 TIGRFAM: Alanine dehydrogenase/pyridine nucleotide transhydrogenase; KEGG: mca:MCA0563 alanine dehydrogenase; PFAM: Alanine dehydrogenase/PNT, N-terminal; Alanine dehydrogenase/PNT, C-terminal YP_004512975.1 KEGG: dar:Daro_3172 response regulator receiver; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004512976.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: slt:Slit_1030 transcriptional regulator, LysR family YP_004512977.1 KEGG: dak:DaAHT2_1647 hypothetical protein YP_004512979.1 TIGRFAM: PAS; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; Signal transduction response regulator, receiver region; PAS fold; KEGG: abu:Abu_0453 two-component response regulator; SMART: Signal transduction response regulator, receiver region; PAS; PAC motif; Metal-dependent phosphohydrolase, HD region YP_004512980.1 PFAM: Outer membrane efflux protein; KEGG: ppd:Ppro_1440 outer membrane efflux protein YP_004512981.1 KEGG: ote:Oter_4131 ABC-type phosphate/phosphonate transport system periplasmic component-like protein YP_004512982.1 PFAM: Cytochrome c, class I; KEGG: cps:CPS_0283 cytochrome c family protein YP_004512983.1 KEGG: asa:ASA_0825 hypothetical protein; TIGRFAM: YidE/YbjL duplication; PFAM: YidE/YbjL duplication; Regulator of K+ conductance, C-terminal YP_004512984.1 KEGG: pat:Patl_0448 2OG-Fe(II) oxygenase; manually curated; PFAM: Oxoglutarate/iron-dependent oxygenase YP_004512985.1 PFAM: GCN5-related N-acetyltransferase; KEGG: drt:Dret_0159 GCN5-related N-acetyltransferase YP_004512986.1 KEGG: mca:MCA1033 hypothetical protein; manually curated; PFAM: Alpha/beta hydrolase fold-1 YP_004512987.1 KEGG: sli:Slin_2409 inorganic diphosphatase; PFAM: Inorganic pyrophosphatase YP_004512988.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Molybdate ABC transporter, ATP-binding protein; KEGG: mca:MCA2836 molybdenum ABC transporter, ATP-binding protein, PFAM: ABC transporter-like; Transport-associated OB, type 1 YP_004512989.1 KEGG: mca:MCA1381 molybdenum transport protein ModG, TIGRFAM: Molybdenum-pterin binding; PFAM: Transport-associated OB, type 1 YP_004512990.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Molybdate ABC transporter, ATP-binding protein; KEGG: mca:MCA1380 molybdenum ABC transporter, ATP-binding protein; PFAM: ABC transporter-like YP_004512991.1 KEGG: pap:PSPA7_3428 molybdenum transporter; TIGRFAM: Molybdate ABC transporter, permease; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004512992.1 KEGG: har:HEAR3439 molybdate-binding periplasmic protein precursor; TIGRFAM: Molybdenum ABC transporter, periplasmic binding protein; PFAM: Bacterial extracellular solute-binding, family 1 YP_004512993.1 KEGG: mex:Mext_1519 hypothetical protein YP_004512994.1 KEGG: mca:MCA0665 glycine cleavage system transcriptional repressor YP_004512995.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: kko:Kkor_1628 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004512996.1 PFAM: SEC-C motif; KEGG: nwa:Nwat_1183 sec-C motif domain-containing protein YP_004512997.1 PFAM: Sodium:dicarboxylate symporter; KEGG: meh:M301_0255 sodium:dicarboxylate symporter YP_004512998.1 PFAM: Protein of unknown function DUF2339, transmembrane; KEGG: plm:Plim_2493 membrane protein-like protein YP_004512999.1 KEGG: hypothetical protein YP_004513000.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: tgr:Tgr7_3043 signal transduction protein YP_004513001.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; KEGG: dat:HRM2_43250 sensory box histidine kinase/response regulator; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; Signal transduction response regulator, receiver region YP_004513002.1 KEGG: dat:HRM2_43260 hypothetical protein YP_004513003.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: gme:Gmet_1669 TonB-dependent receptor, plug YP_004513005.1 PFAM: Aminotransferase, class I/II; HTH transcriptional regulator, GntR; KEGG: cja:CJA_1192 transcriptional regulator, GntR family/aminotransferase class-I; SMART: HTH transcriptional regulator, GntR YP_004513006.1 manually curated; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: opr:Ocepr_0008 phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein YP_004513007.1 TIGRFAM: Branched-chain amino acid aminotransferase I; KEGG: sde:Sde_3057 branched chain amino acid aminotransferase; PFAM: Aminotransferase, class IV YP_004513008.1 KEGG: neu:NE1551 hypothetical protein YP_004513009.1 PFAM: Cupin 2, conserved barrel; KEGG: app:CAP2UW1_1944 cupin 2 conserved barrel domain protein YP_004513010.1 KEGG: amr:AM1_2928 hypothetical protein YP_004513013.1 SMART: HTH transcriptional regulator, DeoR N-terminal; KEGG: azl:AZL_004070 transcriptional regulator YP_004513014.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: azl:AZL_004080 hypothetical protein YP_004513015.1 KEGG: pap:PSPA7_5593 hypothetical protein YP_004513016.1 PFAM: Methyltransferase type 11; KEGG: mac:MA1801 hypothetical protein YP_004513017.1 TIGRFAM: Yeast 2-isopropylmalate synthase; KEGG: app:CAP2UW1_2224 2-isopropylmalate synthase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain YP_004513018.1 KEGG: app:CAP2UW1_2225 transcriptional regulator, AsnC family; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type YP_004513019.1 KEGG: ava:Ava_0113 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_004513021.1 PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: nde:NIDE3505 hypothetical protein YP_004513022.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: asa:ASA_3408 TetR family transcriptional regulator YP_004513023.1 PFAM: O-methyltransferase, family 2; KEGG: rme:Rmet_5070 O-methyltransferase 2 YP_004513025.1 KEGG: app:CAP2UW1_1742 hypothetical protein YP_004513026.1 KEGG: neu:NE0879 esterase/lipase/thioesterase lipase YP_004513027.1 PFAM: Polyketide cyclase/dehydrase; KEGG: plm:Plim_1249 hypothetical protein YP_004513028.1 KEGG: azo:azo1214 hypothetical protein YP_004513031.1 manually curated; KEGG: sbp:Sbal223_3827 hypothetical protein YP_004513032.1 PFAM: Protein of unknown function DUF2132; KEGG: ypb:YPTS_1267 hypothetical protein YP_004513033.1 KEGG: mmw:Mmwyl1_1536 RNP-1 like RNA-binding protein; PFAM: RNA recognition motif, RNP-1; SMART: RNA recognition motif, RNP-1 YP_004513034.1 KEGG: gob:Gobs_2142 40-residue YVTN family beta-propeller repeat-containing protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup YP_004513035.1 KEGG: type VI secretion system vgr family protein YP_004513036.1 KEGG: npu:Npun_R4418 hypothetical protein YP_004513037.1 KEGG: ttu:TERTU_2610 transcriptional activator protein anr; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding YP_004513038.1 PFAM: FIST C domain; FIST domain, N-terminal; KEGG: slt:Slit_1459 FIST C domain protein YP_004513039.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: slt:Slit_1460 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted YP_004513040.1 KEGG: sse:Ssed_0651 metal dependent phosphohydrolase; PFAM: Extracellular solute-binding protein, family 3; HAMP linker domain; Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Extracellular solute-binding protein, family 3; Metal-dependent phosphohydrolase, HD region YP_004513041.1 TIGRFAM: Citrate synthase, type II; KEGG: alv:Alvin_3052 citrate synthase I; PFAM: Citrate synthase-like YP_004513042.1 PFAM: Protein of unknown function DUF1674; KEGG: sbi:SORBI_10g003960 hypothetical protein YP_004513043.1 KEGG: azl:AZL_001730 succinate dehydrogenase cytochrome b-556 subunit; TIGRFAM: Succinate dehydrogenase, cytochrome b556 subunit; PFAM: Succinate dehydrogenase, cytochrome b subunit YP_004513044.1 KEGG: apt:APA01_00320 succinate dehydrogenase membrane anchor subunit; TIGRFAM: Succinate dehydrogenase, hydrophobic membrane anchor; PFAM: Succinate dehydrogenase, cytochrome b subunit YP_004513045.1 TIGRFAM: Succinate dehydrogenase, flavoprotein subunit; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; KEGG: mca:MCA1550 succinate dehydrogenase flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal YP_004513046.1 KEGG: aeh:Mlg_1335 succinate dehydrogenase iron-sulfur subunit; TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein YP_004513047.1 PFAM: Protein of unknown function DUF339; KEGG: xac:XAC2079 hypothetical protein YP_004513049.1 KEGG: hch:HCH_05926 Tfp pilus assembly protein PilE YP_004513050.1 PFAM: Neisseria PilC; KEGG: nhl:Nhal_0907 fimbrial assembly protein YP_004513051.1 KEGG: pca:Pcar_2156 Tfp pilus assembly protein PilX YP_004513052.1 KEGG: nhl:Nhal_0908 type IV pilus assembly protein PilW YP_004513053.1 TIGRFAM: Pilus modification type IV, PilV; Prepilin-type cleavage/methylation, N-terminal; KEGG: nhl:Nhal_0911 type IV pilus modification protein PilV YP_004513054.1 KEGG: pca:Pcar_2159 Tfp pilus assembly protein FimT YP_004513055.1 KEGG: hch:HCH_00454 CheY-like receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004513056.1 KEGG: hha:Hhal_2167 CheA signal transduction histidine kinases; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup, homodimeric; Signal transduction histidine kinase, phosphotransfer (Hpt) region; CheW-like protein; SMART: CheW-like protein; Signal transduction histidine kinase, phosphotransfer (Hpt) region; ATP-binding region, ATPase-like YP_004513057.1 KEGG: sde:Sde_3106 biotin synthase; PFAM: CheW-like protein; SMART: CheW-like protein YP_004513058.1 TIGRFAM: PAS; PFAM: Chemotaxis methyl-accepting receptor, signalling; PAS fold-3; KEGG: meh:M301_0856 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: Chemotaxis methyl-accepting receptor, signalling; PAC motif; PAS YP_004513059.1 KEGG: ttu:TERTU_1340 purine-binding chemotaxis protein CheW; PFAM: CheW-like protein; SMART: CheW-like protein YP_004513060.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: hha:Hhal_2164 cobyrinic acid a,c-diamide synthase YP_004513061.1 KEGG: sde:Sde_3109 hypothetical protein YP_004513062.1 PFAM: MCP methyltransferase, CheR-type; KEGG: tcx:Tcr_0757 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase, CheR-type YP_004513063.1 HAMAP: Chemoreceptor glutamine deamidase cheD; KEGG: hha:Hhal_2161 chemoreceptor glutamine deamidase CheD; PFAM: Chemoreceptor glutamine deamidase cheD YP_004513064.1 SMART: Signal transduction response regulator, receiver region; HAMAP: Chemotaxis response regulator protein-glutamate methylesterase; KEGG: xac:XAC1888 chemotaxis-specific methylesterase; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; Signal transduction response regulator, receiver region YP_004513065.1 KEGG: mgm:Mmc1_3578 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004513066.1 PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: gpb:HDN1F_31750 hypothetical protein YP_004513067.1 PFAM: Uncharacterised protein family UPF0118; KEGG: mca:MCA0662 permease YP_004513068.1 KEGG: mca:MCA0663 PhoH family protein; PFAM: PhoH-like protein; SMART: Nucleotide binding protein, PINc YP_004513069.1 KEGG: dol:Dole_0882 hypothetical protein YP_004513070.1 KEGG: tgr:Tgr7_1408 TPR repeat-containing protein YP_004513071.1 SMART: Helicase, ATP-dependent, c2 type; DEAD-like helicase, N-terminal; Helicase-like, DEXD box c2 type; KEGG: mca:MCA1991 ATP-dependent helicase YP_004513072.1 KEGG: tgr:Tgr7_1410 peptidase M22 glycoprotease; TIGRFAM: universal protein YeaZ; PFAM: Peptidase M22, glycoprotease YP_004513073.1 KEGG: mmw:Mmwyl1_3395 SUA5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal YP_004513074.1 PFAM: Peptidase M50; KEGG: dak:DaAHT2_0739 peptidase M50 YP_004513075.1 KEGG: tgr:Tgr7_2013 hypothetical protein; HAMAP: Segregation and condensation protein A; PFAM: Prokaryotic chromosome segregation/condensation protein ScpA YP_004513076.1 KEGG: tgr:Tgr7_2012 segregation and condensation protein B; TIGRFAM: Chromosome segregation/condensation protein ScpB, prokaryote; PFAM: Chromosome segregation/condensation protein ScpB, prokaryote YP_004513077.1 TIGRFAM: Pseudouridine synthase, RsuA and RluB/E/F; PFAM: RNA-binding S4; Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: maq:Maqu_1162 RNA-binding S4 domain-containing protein; SMART: RNA-binding S4 YP_004513078.1 KEGG: tbd:Tbd_1803 hypothetical protein YP_004513079.1 KEGG: sdn:Sden_0659 response regulator receiver; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004513080.1 PFAM: Protein of unknown function DUF447; KEGG: mfa:Mfla_1580 hypothetical protein YP_004513081.1 PFAM: Protein of unknown function DUF556; KEGG: mca:MCA1243 hypothetical protein YP_004513082.1 TIGRFAM: Glycine cleavage system T protein; KEGG: hch:HCH_03858 glycine cleavage system T protein; PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel YP_004513083.1 TIGRFAM: Glycine cleavage system P-protein; HAMAP: Glycine cleavage system P-protein; KEGG: rpx:Rpdx1_1499 glycine dehydrogenase; PFAM: Glycine cleavage system P-protein, N-terminal; Aromatic amino acid beta-eliminating lyase/threonine aldolase YP_004513085.1 KEGG: yps:YPTB0221 cell division protein YP_004513087.1 HAMAP: Formate-tetrahydrofolate ligase, FTHFS; KEGG: mca:MCA2219 formate--tetrahydrofolate ligase; PFAM: Formate-tetrahydrofolate ligase, FTHFS YP_004513088.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: mfa:Mfla_0507 glutathione S-transferase-like protein YP_004513089.1 KEGG: bam:Bamb_4195 MobA-like protein-like protein YP_004513090.1 PFAM: XdhC- CoxI; KEGG: aeh:Mlg_1569 hypothetical protein YP_004513091.1 KEGG: har:HEAR1179 isoquinoline 1-oxidoreductase alpha subunit; PFAM: [2Fe-2S]-binding; Ferredoxin YP_004513092.1 KEGG: pap:PSPA7_2883 aldehyde dehydrogenase; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding YP_004513093.1 KEGG: nmu:Nmul_A0976 hypothetical protein YP_004513094.1 PFAM: Histidine triad (HIT) protein; KEGG: mmw:Mmwyl1_2336 histidine triad (HIT) protein YP_004513096.1 KEGG: tva:TVAG_460570 hypothetical protein YP_004513097.1 PFAM: Dodecin flavoprotein; KEGG: brh:RBRH_04236 hypothetical cytosolic protein YP_004513098.1 TIGRFAM: Thiamine monophosphate synthase; HAMAP: Thiamine-phosphate pyrophosphorylase; KEGG: alv:Alvin_0104 thiamine-phosphate pyrophosphorylase; PFAM: Thiamine monophosphate synthase YP_004513099.1 KEGG: tgr:Tgr7_2419 phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1 YP_004513100.1 PFAM: NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; BRCT; KEGG: dps:DP1006 NAD-dependent DNA ligase; SMART: NAD-dependent DNA ligase, N-terminal; BRCT YP_004513101.1 KEGG: mca:MCA2322 transctiptional regulator YP_004513102.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: sku:Sulku_1101 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004513103.1 TIGRFAM: Pyruvate, phosphate dikinase; KEGG: mca:MCA3020 pyruvate phosphate dikinase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile region; PEP-utilising enzyme YP_004513104.1 PFAM: Pyrrolo-quinoline quinone repeat YP_004513106.1 PFAM: Transposase IS200-like; KEGG: eba:ebA563 transposition helper protein YP_004513107.1 KEGG: bpf:BpOF4_06025 hypothetical protein YP_004513108.1 PFAM: Transposase, IS4-like; KEGG: xbo:XBJ1_1885 transposase YP_004513109.1 HAMAP: UPF0313 protein ygiQ; PFAM: Radical SAM N-terminal; Radical SAM; KEGG: mca:MCA0293 hypothetical protein; SMART: Elongator protein 3/MiaB/NifB YP_004513110.1 PFAM: Spermine synthase; KEGG: mca:MCA1034 hypothetical protein YP_004513111.1 KEGG: swi:Swit_2398 hypothetical protein YP_004513112.1 PFAM: Amine oxidase; KEGG: mca:MCA2837 amine oxidase YP_004513115.1 KEGG: mca:MCA1304 hypothetical protein YP_004513116.1 KEGG: mca:MCA1305 DnaK-related protein YP_004513117.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Rickettsia 17kDa surface antigen; KEGG: hel:HELO_4468 OmpA/MotB domain protein YP_004513118.1 PFAM: MOSC, N-terminal beta barrel; Molybdenum cofactor sulfurase, C-terminal; KEGG: MOSC domain-containing protein YP_004513119.1 PFAM: Type IV pilus assembly PilZ YP_004513120.1 TIGRFAM: ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system; KEGG: mca:MCA1278 hypothetical protein YP_004513121.1 TIGRFAM: PQQ-dependent catabolism-associated beta-propeller protein; YVTN beta-propeller repeat; KEGG: mca:MCA1279 hypothetical protein YP_004513122.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system; KEGG: mca:MCA1280 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like YP_004513123.1 KEGG: mca:MCA1281 ABC transporter, permease; TIGRFAM: alcohol ABC transporter, permease; PFAM: ABC-2 type transporter YP_004513124.1 PFAM: Peptidase M50; KEGG: rpf:Rpic12D_2396 peptidase M50 YP_004513125.1 KEGG: tmz:Tmz1t_1472 hypothetical protein YP_004513126.1 PFAM: CsbD-like; KEGG: dar:Daro_2060 CsbD-like YP_004513127.1 PFAM: Glycosyltransferase 36; carbohydrate binding; Glycosyltransferase 36 associated; KEGG: mms:mma_1954 cyclic beta 1-2 glucan synthetase YP_004513128.1 KEGG: sbp:Sbal223_2127 hypothetical protein YP_004513129.1 KEGG: sno:Snov_4005 hypothetical protein YP_004513131.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: tbd:Tbd_0244 outer membrane protein YP_004513132.1 KEGG: tbd:Tbd_0243 hypothetical protein YP_004513133.1 KEGG: meh:M301_0483 PAS/PAC sensor signal transduction histidine kinase YP_004513134.1 PFAM: Integrase, catalytic core; KEGG: azl:AZL_b03960 transposase YP_004513136.1 KEGG: vsp:VS_1816 hypothetical protein; PFAM: Signal transduction response regulator, receiver region; Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Signal transduction response regulator, receiver region; Metal-dependent phosphohydrolase, HD region YP_004513137.1 KEGG: nde:NIDE2119 histidine kinase; PFAM: Sporulation stage II, protein E C-terminal; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; Protein phosphatase 2C-related YP_004513138.1 KEGG: dma:DMR_27280 response regulator receiver protein; PFAM: Metal-dependent hydrolase HDOD; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004513139.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; PAS fold; KEGG: dma:DMR_27290 sensor histidine kinase; SMART: ATP-binding region, ATPase-like; PAS; PAC motif YP_004513140.1 PFAM: SmpA/OmlA; KEGG: mca:MCA2622 small protein A YP_004513141.1 PFAM: Ferric-uptake regulator; KEGG: mca:MCA2623 ferric uptake regulation protein YP_004513142.1 KEGG: mca:MCA2624 lipoprotein ABC transporter, permease LolE; TIGRFAM: Lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: Protein of unknown function DUF214, permase predicted YP_004513143.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Lipoprotein releasing system, ATP-binding protein; KEGG: mca:MCA2625 lipoprotein ABC transporter, ATP-binding protein LolD; PFAM: ABC transporter-like YP_004513145.1 PFAM: Protein of unknown function DUF2062; KEGG: avn:Avin_14720 hypothetical protein YP_004513146.1 PFAM: PepSY-associated TM helix; KEGG: mca:MCA1027 hypothetical protein YP_004513147.1 KEGG: mca:MCA2627 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein YP_004513148.1 PFAM: Dynein light chain-related YP_004513149.1 PFAM: Dynein light chain-related; KEGG: mpi:Mpet_2717 roadblock/LC7 family protein YP_004513150.1 PFAM: 4-vinyl reductase, 4VR; KEGG: hth:HTH_0148 hypothetical protein YP_004513151.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: ppn:Palpr_2910 OmpA/MotB domain protein YP_004513152.1 PFAM: Fructosamine/Ketosamine-3-kinase; KEGG: nmu:Nmul_A2329 fructosamine kinase YP_004513153.1 PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; TIGRFAM: Glutaminyl-tRNA synthetase, class Ic; HAMAP: Glutaminyl-tRNA synthetase; KEGG: gpb:HDN1F_33480 glutaminyl-tRNA synthetase YP_004513154.1 KEGG: mca:MCA0136 RNA polymerase factor sigma-32; TIGRFAM: RNA polymerase sigma factor RpoH, proteobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4 YP_004513155.1 PFAM: Protein of unknown function DUF159; KEGG: rxy:Rxyl_0489 hypothetical protein YP_004513156.1 KEGG: vei:Veis_0127 hypothetical protein YP_004513157.1 KEGG: vei:Veis_0124 hypothetical protein YP_004513158.1 KEGG: aca:ACP_3139 hypothetical protein YP_004513160.1 KEGG: opr:Ocepr_1901 hypothetical protein YP_004513163.1 PFAM: Protein of unknown function DUF114; KEGG: ppf:Pput_4091 hypothetical protein YP_004513165.1 KEGG: gur:Gura_2107 hypothetical protein YP_004513166.1 KEGG: nhl:Nhal_2265 hypothetical protein YP_004513168.1 PFAM: Methenyltetrahydromethanopterin cyclohydrolase; ATP-grasp fold, DUF201-type; TIGRFAM: Methenyltetrahydromethanopterin cyclohydrolase; HAMAP: Methenyltetrahydromethanopterin cyclohydrolase; KEGG: mca:MCA2863 N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase YP_004513169.1 KEGG: mca:MCA2864 ribosomal protein S6 modification protein, TIGRFAM: S6 modification enzyme RimK; PFAM: ATP-grasp fold, RimK-type YP_004513170.1 PFAM: Triphosphoribosyl-dephospho-CoA protein; KEGG: mca:MCA2865 ATP:dephospho-CoA triphosphoribosyl transferase YP_004513171.1 KEGG: mpt:Mpe_A2612 formaldehyde-activating enzyme; TIGRFAM: Formaldehyde-activating enzyme; PFAM: Formaldehyde-activating enzyme YP_004513172.1 PFAM: Histidine biosynthesis; KEGG: mfa:Mfla_1651 histidine biosynthesis YP_004513173.1 PFAM: ATP-grasp fold, DUF201-type; KEGG: mca:MCA2868 hypothetical protein YP_004513174.1 KEGG: mep:MPQ_1555 h4mpt-linked c1 transfer pathway protein; TIGRFAM: Tetrahydromethanopterin-linked C1 transfer pathway, PFAM: Hydantoinase/oxoprolinase YP_004513175.1 TIGRFAM: Para-aminobenzoate synthase, component I; KEGG: mca:MCA2870 para-aminobenzoate synthase, component I; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal YP_004513176.1 PFAM: Aspartate/glutamate/uridylate kinase; KEGG: bxe:Bxe_B2457 tetrahydromethanopterin biosynthesis protein, kinase YP_004513177.1 KEGG: mca:MCA0520 hypothetical protein YP_004513179.1 PFAM: GTP-binding protein, HSR1-related; KEGG: hypothetical protein YP_004513180.1 KEGG: mca:MCA1394 hypothetical protein YP_004513181.1 PFAM: Glycosyl hydrolase, family 13, catalytic region; KEGG: tcx:Tcr_1797 alpha amylase, catalytic region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region YP_004513182.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: alv:Alvin_2821 MotA/TolQ/ExbB proton channel YP_004513183.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: nwa:Nwat_2274 OmpA/MotB domain-containing protein YP_004513184.1 PFAM: Type IV pilus assembly PilZ; KEGG: hch:HCH_05860 hypothetical protein YP_004513186.1 PFAM: Glycoside hydrolase, family 24; SH3, type 3; KEGG: btr:Btr_0306 phage-related lysozyme; SMART: Bacterial SH3-like region YP_004513187.1 KEGG: mca:MCA2767 NAD(P) transhydrogenase, beta subunit; PFAM: NAD(P) transhydrogenase, beta subunit YP_004513188.1 KEGG: nhl:Nhal_3870 NAD(P) transhydrogenase, alpha subunit; TIGRFAM: NAD(P) transhydrogenase, alpha subunit; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal YP_004513189.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; KEGG: cja:CJA_2420 response regulator; SMART: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region YP_004513190.1 KEGG: nhl:Nhal_0416 hypothetical protein YP_004513191.1 KEGG: mca:MCA2733 HAD-superfamily hydrolase, subfamily IA, variant 3 family protein; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_004513192.1 KEGG: mca:MCA2861 GHMP family kinase; TIGRFAM: GHMP kinase group 1; PFAM: GHMP kinase; GHMP kinase, C-terminal YP_004513193.1 PFAM: Sulphur oxidation protein SoxZ; KEGG: mca:MCA1989 sulfur compound-chelating protein SoxZ YP_004513194.1 KEGG: cch:Cag_1923 twin-arginine translocation pathway signal YP_004513195.1 KEGG: mca:MCA0160 hypothetical protein YP_004513196.1 TIGRFAM: Methylthioadenosine phosphorylase; KEGG: tgr:Tgr7_1751 methylthioadenosine phosphorylase; PFAM: Nucleoside phosphorylase YP_004513197.1 PFAM: Phosphoribosyltransferase; KEGG: cbg:CbuG_0930 hypoxanthine-guanine phosphoribosyltransferase YP_004513198.1 KEGG: mca:MCA1984 beta-hexosaminidase; HAMAP: Beta-hexosaminidase; PFAM: Glycoside hydrolase, family 3, N-terminal YP_004513199.1 PFAM: Flagellar basal body-associated protein FliL; KEGG: hch:HCH_06420 flagellar basal body-associated protein FliL-like protein YP_004513200.1 PFAM: Integrase, catalytic core; KEGG: ppr:PBPRB1144 transposase YP_004513201.1 KEGG: pna:Pnap_1740 transposase YP_004513202.1 KEGG: dac:Daci_4192 chromosome segregation ATPase-like protein YP_004513203.1 KEGG: bpt:Bpet4251 hypothetical protein YP_004513204.1 SMART: ATPase, AAA+ type, core; KEGG: dac:Daci_4194 AAA ATPase YP_004513205.1 SMART: Serine/threonine-protein kinase domain; KEGG: dac:Daci_4195 serine/threonine protein kinase YP_004513206.1 KEGG: dac:Daci_4196 hypothetical protein YP_004513207.1 KEGG: dac:Daci_4197 hypothetical protein YP_004513208.1 KEGG: bpt:Bpet4246 hypothetical protein YP_004513209.1 PFAM: Cell divisionFtsK/SpoIIIE; KEGG: bpt:Bpet4245 hypothetical protein YP_004513210.1 KEGG: dac:Daci_4200 hypothetical protein YP_004513211.1 KEGG: bpt:Bpet4244 hypothetical protein YP_004513212.1 KEGG: dac:Daci_4201 hypothetical protein YP_004513213.1 PFAM: Protein of unknown function Hp0062; KEGG: dac:Daci_4202 hypothetical protein YP_004513214.1 KEGG: dac:Daci_4203 von Willebrand factor type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A YP_004513215.1 KEGG: gpb:HDN1F_22890 hypothetical protein YP_004513216.1 KEGG: mpo:Mpop_5139 addiction module antidote protein, CopG/Arc/MetJ family; TIGRFAM: addiction module antidote protein, CC2985; PFAM: addiction module antidote protein, CC2985 YP_004513217.1 PFAM: Plasmid stabilisation system; KEGG: vvu:VV1_2525 plasmid stabilization element ParE YP_004513218.1 KEGG: pin:Ping_1854 hypothetical protein YP_004513219.1 KEGG: cps:CPS_2618 hypothetical protein YP_004513220.1 KEGG: pin:Ping_1847 hypothetical protein YP_004513221.1 KEGG: cps:CPS_2616 hypothetical protein YP_004513223.1 PFAM: Exonuclease C-terminal; Exonuclease, RNase T/DNA polymerase III; KEGG: hch:HCH_05002 exonuclease I; SMART: Exonuclease YP_004513224.1 PFAM: Polyketide cyclase/dehydrase; KEGG: msl:Msil_0195 hypothetical protein YP_004513225.1 KEGG: mei:Msip34_0604 40-residue YVTN family beta-propeller repeat protein; TIGRFAM: YVTN beta-propeller repeat; PFAM: NHL repeat YP_004513226.1 KEGG: alv:Alvin_1472 hypothetical protein YP_004513227.1 PFAM: FeoC like transcriptional regulator; KEGG: alv:Alvin_1524 hypothetical protein YP_004513228.1 KEGG: hch:HCH_03835 ferrous iron transport protein B; TIGRFAM: Ferrous iron transport protein B; Small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B, N-terminal; Nucleoside recognition; Ferrous iron transport protein B, C-terminal YP_004513229.1 PFAM: Ferrous iron transporter, FeoA subunit; KEGG: hch:HCH_03834 Fe2+ transport system protein A YP_004513232.1 PFAM: Zonular occludens toxin; KEGG: pap:PSPA7_5366 hypothetical protein YP_004513233.1 PFAM: Protein of unknown function DUF2523; KEGG: pap:PSPA7_5367 bacteriophage protein YP_004513234.1 KEGG: ote:Oter_1689 cell wall surface anchor family protein YP_004513237.1 KEGG: hiq:CGSHiGG_00610 hypothetical protein YP_004513241.1 KEGG: hypothetical protein YP_004513242.1 TIGRFAM: Oxygen-independent coproporphyrinogen III oxidase HemN; PFAM: HemN, C-terminal; Radical SAM; KEGG: tcx:Tcr_0501 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB YP_004513243.1 KEGG: gca:Galf_1765 cytochrome c-type biogenesis protein CcmI; TIGRFAM: Cytochrome c-type biogenesis protein CcmI; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-3 YP_004513244.1 PFAM: Cytochrome C biogenesis protein CcmH; KEGG: mca:MCA0416 cytochrome c-type biogenesis protein CcmH YP_004513245.1 KEGG: pna:Pnap_0584 periplasmic protein thiol--disulphide oxidoreductase DsbE; TIGRFAM: Periplasmic protein thiol:disulphide oxidoreductase DsbE; PFAM: Redoxin YP_004513246.1 KEGG: gca:Galf_1768 cytochrome c-type biogenesis protein CcmF; TIGRFAM: Cytochrome c-type biogenesis protein CcmF; PFAM: Cytochrome c assembly protein YP_004513247.1 KEGG: psp:PSPPH_3310 cytochrome c-type biogenesis protein CcmE; HAMAP: CcmE/CycJ protein; PFAM: CcmE/CycJ protein YP_004513248.1 KEGG: mca:MCA0420 heme exporter protein CcmD, TIGRFAM: Haem exporter protein D (CcmD); PFAM: Haem exporter protein D (CcmD) YP_004513249.1 KEGG: mca:MCA0952 heme exporter protein CcmC; TIGRFAM: Cytochrome c-type biogenesis protein CcmC; PFAM: Cytochrome c assembly protein YP_004513250.1 KEGG: mca:MCA0953 heme exporter protein CcmB; TIGRFAM: Cytochrome c-type biogenesis protein CcmB; PFAM: Cytochrome c-type biogenesis protein CcmB YP_004513251.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, haem export, CcmA; KEGG: ppr:PBPRA0948 cytochrome c biogenesis protein CcmA; PFAM: ABC transporter-like YP_004513252.1 KEGG: tgr:Tgr7_1278 hypothetical protein YP_004513253.1 PFAM: Plasmid stabilisation system; KEGG: gur:Gura_3199 addiction module antitoxin YP_004513254.1 KEGG: pna:Pnap_1740 transposase YP_004513256.1 KEGG: dar:Daro_1888 hypothetical protein YP_004513257.1 TIGRFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: mrb:Mrub_1135 phosphoribosylaminoimidazole carboxylase catalytic subunit; PFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_004513258.1 TIGRFAM: Phosphoribosylaminoimidazole carboxylase, ATPase subunit; KEGG: mrb:Mrub_1137 phosphoribosylaminoimidazole carboxylase ATPase subunit; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YP_004513259.1 PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; KEGG: cyh:Cyan8802_2894 V-type ATP synthase subunit B YP_004513260.1 KEGG: cyp:PCC8801_3225 V-type ATP synthase subunit D; TIGRFAM: ATPase, V1/A1 complex, subunit D; PFAM: ATPase, V1/A1 complex, subunit D YP_004513261.1 PFAM: ATPase, V0/A0 complex, 116kDa subunit; KEGG: cyh:Cyan8802_2896 V-type ATPase 116 kDa subunit YP_004513262.1 PFAM: ATPase, F0/V0 complex, subunit C; KEGG: hel:HELO_2670 V-type ATP synthase subunit K YP_004513263.1 KEGG: hel:HELO_2669 hypothetical protein YP_004513264.1 KEGG: cyh:Cyan8802_2899 hypothetical protein YP_004513265.1 PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; KEGG: cyp:PCC8801_3217 V-type ATP synthase subunit A YP_004513266.1 manually curated; TIGRFAM: PAS; KEGG: slt:Slit_2381 PAS/PAC sensor protein; PFAM: PAS fold-3 YP_004513267.1 KEGG: azo:azo3475 MCP-domain-containing signal transduction protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004513268.1 PFAM: Lipopolysaccharide biosynthesis; KEGG: neu:NE0588 phage integrase:chain length determinant protein YP_004513269.1 PFAM: Inorganic H+ pyrophosphatase; TIGRFAM: Inorganic H+ pyrophosphatase; HAMAP: Pyrophosphate-energized proton pump; KEGG: mem:Memar_0044 membrane-bound proton-translocating pyrophosphatase YP_004513270.1 KEGG: nwa:Nwat_0840 hypothetical protein YP_004513271.1 KEGG: slt:Slit_1299 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004513272.1 KEGG: mms:mma_0564 signal transduction protein; TIGRFAM: HDIG; PFAM: Metal-dependent hydrolase HDOD YP_004513273.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; PAS fold-3; GAF; KEGG: hse:Hsero_3733 two component transmembrane sensor histidine kinase; SMART: ATP-binding region, ATPase-like; GAF; PAC motif YP_004513274.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; PAS fold; KEGG: response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; PAS; PAC motif YP_004513275.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; PAS fold-3; KEGG: cyc:PCC7424_3523 diguanylate cyclase with PAS/PAC and GAF sensors; SMART: Diguanylate cyclase, predicted; PAC motif; PAS YP_004513276.1 TIGRFAM: PAS; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor region; GAF; PAS fold; ATP-binding region, ATPase-like; KEGG: pol:Bpro_3509 signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; PAS; GAF YP_004513277.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; PAS fold-4; PAS fold; KEGG: npu:Npun_F3678 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; PAS; PAC motif YP_004513278.1 KEGG: hch:HCH_04031 hypothetical protein YP_004513279.1 PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; TIGRFAM: Pseudouridine synthase I, TruA; HAMAP: Pseudouridine synthase I, TruA; KEGG: mca:MCA2497 tRNA pseudouridine synthase A YP_004513280.1 PFAM: YkuD domain; KEGG: mca:MCA1874 hypothetical protein YP_004513281.1 TIGRFAM: 23S rRNA methyltransferase/RumA; HAMAP: 23S rRNA (uracil-5-)-methyltransferase rumA; KEGG: mca:MCA1898 23S rRNA (uracil-5-)-methyltransferase RumA; PFAM: (Uracil-5)-methyltransferase; Deoxyribonuclease/rho motif-related TRAM YP_004513282.1 TIGRFAM: Cysteine synthase B; Cysteine synthase K/M; KEGG: mca:MCA1899 cysteine synthase B; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004513283.1 PFAM: Polyphosphate kinase; TIGRFAM: polyphosphate kinase 1; HAMAP: Polyphosphate kinase; KEGG: mca:MCA1954 polyphosphate kinase YP_004513284.1 SMART: Exonuclease; TIGRFAM: DNA polymerase 3, epsilon subunit; DNA polymerase III, epsilon subunit; KEGG: mmw:Mmwyl1_1705 DNA polymerase III subunit epsilon; PFAM: Exonuclease, RNase T/DNA polymerase III YP_004513285.1 KEGG: alv:Alvin_0780 RNA polymerase sigma-70 subunit RpoD subfamily; TIGRFAM: RNA polymerase sigma factor RpoS, proteobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4 YP_004513286.1 KEGG: alv:Alvin_1130 heat shock protein DnaJ domain-containing protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal YP_004513287.1 KEGG: mca:MCA2450 molybdopterin-guanine dinucleotide biosynthesis protein MobB; TIGRFAM: Molybdopterin-guanine dinucleotide biosynthesis MobB region; PFAM: Molybdopterin-guanine dinucleotide biosynthesis MobB region YP_004513288.1 KEGG: tgr:Tgr7_2132 molybdenum cofactor synthesis domain protein; TIGRFAM: Molybdenum cofactor synthesis; PFAM: MoeA, N-terminal region, domain I/II; Molybdopterin binding; MoeA, C-terminal, domain IV YP_004513289.1 PFAM: Porin, alpha proteobacteria type; KEGG: pol:Bpro_5280 hypothetical protein YP_004513291.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Type IV pilus assembly PilZ; KEGG: hch:HCH_01032 signal transduction protein; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted YP_004513292.1 KEGG: spl:Spea_0714 hypothetical protein YP_004513293.1 KEGG: bur:Bcep18194_A4015 rhodanese-related sulfurtransferase; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_004513294.1 KEGG: nhl:Nhal_2700 aminotransferase class I and II; PFAM: Aminotransferase, class I/II YP_004513295.1 TIGRFAM: RNA polymerase-binding, DksA; KEGG: mca:MCA0517 DnaK suppressor protein YP_004513296.1 PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; manually curated; TIGRFAM: glutamyl-queuosine tRNA(Asp) synthetase; KEGG: mfa:Mfla_1109 glutamyl-Q tRNA(Asp) synthetase; HAMAP: Glutamyl-Q tRNA(Asp) synthetase YP_004513298.1 PFAM: AMP-dependent synthetase/ligase; TIGRFAM: Acetate--CoA ligase; HAMAP: Acetyl-coenzyme A synthetase; KEGG: alv:Alvin_0165 acetate/CoA ligase YP_004513299.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: mca:MCA2967 hypothetical protein YP_004513301.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; PAS fold-4; GAF; KEGG: mmb:Mmol_1227 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; PAS YP_004513302.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; PAS fold-4; PAS fold; Signal transduction response regulator, receiver region; KEGG: gca:Galf_1309 multi-sensor hybrid histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; PAS; PAC motif; Signal transduction response regulator, receiver region YP_004513303.1 KEGG: gur:Gura_1551 hypothetical protein YP_004513304.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: TonB-dependent receptor plug YP_004513305.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; PAS fold; KEGG: rfr:Rfer_1767 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; PAS; PAC motif YP_004513306.1 KEGG: rfr:Rfer_1768 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region YP_004513307.1 TIGRFAM: PAS; PFAM: HAMP linker domain; PAS fold; PAS fold-3; KEGG: tbd:Tbd_1456 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: HAMP linker domain; PAS; PAC motif YP_004513308.1 KEGG: mca:MCA3025 penicillin acylase II; PFAM: Peptidase S45, penicillin amidase YP_004513309.1 PFAM: PspA/IM30; KEGG: PspA/IM30 family protein YP_004513310.1 PFAM: Protein of unknown function DUF1449; KEGG: hypothetical protein YP_004513311.1 KEGG: tbd:Tbd_2218 hypothetical protein; PFAM: Band 7 protein; SMART: Band 7 protein YP_004513312.1 KEGG: nde:NIDE4194 hypothetical protein; TIGRFAM: Protein of unknown function DUF124; PFAM: Protein of unknown function DUF124 YP_004513313.1 PFAM: Peptidase M48, Ste24p; KEGG: nde:NIDE4192 peptidase YP_004513314.1 KEGG: aav:Aave_2301 hypothetical protein YP_004513315.1 KEGG: rru:Rru_A0637 hypothetical protein YP_004513316.1 KEGG: msl:Msil_2615 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004513317.1 KEGG: mil:ML5_4023 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF1877 YP_004513318.1 KEGG: dfe:Dfer_0662 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat YP_004513319.1 KEGG: dfe:Dfer_0663 hypothetical protein YP_004513320.1 KEGG: tmz:Tmz1t_1864 AAA ATPase central domain protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core YP_004513321.1 KEGG: tmz:Tmz1t_1865 hypothetical protein YP_004513322.1 KEGG: tmz:Tmz1t_1866 hypothetical protein YP_004513323.1 KEGG: tmz:Tmz1t_1867 hypothetical protein YP_004513324.1 KEGG: tmz:Tmz1t_1869 hypothetical protein YP_004513325.1 KEGG: tmz:Tmz1t_1870 hypothetical protein YP_004513326.1 KEGG: tmz:Tmz1t_1871 hypothetical protein YP_004513327.1 TIGRFAM: Conserved hypothetical protein CHP02243; KEGG: tmz:Tmz1t_1872 hypothetical protein YP_004513328.1 PFAM: GPW/gp25; KEGG: tmz:Tmz1t_1873 gpW/GP25 family protein YP_004513329.1 KEGG: tmz:Tmz1t_1874 hypothetical protein YP_004513330.1 KEGG: tmz:Tmz1t_1875 hypothetical protein YP_004513331.1 KEGG: tmz:Tmz1t_1876 hypothetical protein YP_004513333.1 KEGG: tmz:Tmz1t_1878 hypothetical protein YP_004513334.1 KEGG: tmz:Tmz1t_1879 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02241, phage tail region protein; PFAM: Conserved hypothetical protein CHP02241, phage tail region protein YP_004513335.1 KEGG: tmz:Tmz1t_1880 hypothetical protein YP_004513336.1 KEGG: tmz:Tmz1t_1881 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02241, phage tail region protein; PFAM: Conserved hypothetical protein CHP02241, phage tail region protein YP_004513337.1 KEGG: tmz:Tmz1t_1882 tail sheath protein YP_004513338.1 KEGG: tmz:Tmz1t_1883 hypothetical protein YP_004513339.1 KEGG: tmz:Tmz1t_1884 hypothetical protein YP_004513341.1 KEGG: pat:Patl_2821 hypothetical protein YP_004513342.1 KEGG: mca:MCA1102 sigma-54 dependent transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; PAS fold; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core YP_004513343.1 KEGG: mca:MCA0359 phosphotransferase domain-containing protein; PFAM: PHP, C-terminal; SMART: Polymerase/histidinol phosphatase, N-terminal YP_004513344.1 PFAM: ABC transporter-like; ABC transporter, transmembrane region; KEGG: nhl:Nhal_1910 ABC transporter related protein; SMART: ATPase, AAA+ type, core YP_004513345.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: tkm:TK90_2373 lytic transglycosylase catalytic YP_004513346.1 PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; HAMAP: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase; KEGG: mmb:Mmol_1540 3-hydroxydecanoyl-(acyl carrier protein) dehydratase YP_004513347.1 KEGG: mca:MCA2879 3-oxoacyl-(acyl-carrier-protein) synthase I; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal YP_004513348.1 KEGG: cja:CJA_2075 hypothetical protein; HAMAP: tRNA 2-thiocytidine biosynthesis protein TtcA; PFAM: PP-loop YP_004513349.1 TIGRFAM: UDP-glucose 4-epimerase; KEGG: sde:Sde_0734 UDP-galactose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase YP_004513350.1 PFAM: TfoX, N-terminal; KEGG: mep:MPQ_0202 tfox domain protein YP_004513351.1 KEGG: hna:Hneap_1663 GCN5-related N-acetyltransferase YP_004513352.1 KEGG: mac:MA2300 5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase B/oxoprolinase; Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal YP_004513353.1 KEGG: gbm:Gbem_1715 hypothetical protein; HAMAP: Protein of unknown function DUF167; PFAM: Protein of unknown function DUF167 YP_004513354.1 PFAM: Helix-turn-helix, HxlR type; KEGG: helix-turn-helix HxlR type YP_004513355.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: pst:PSPTO_4257 4-oxalocrotonate tautomerase YP_004513356.1 PFAM: Alpha-2-macroglobulin, N-terminal; Alpha-2-macroglobulin, N-terminal 2; KEGG: meh:M301_0675 alpha-2-macroglobulin domain protein YP_004513358.1 TIGRFAM: Hopene cyclase; Squalene cyclase; KEGG: mca:MCA0812 squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase YP_004513359.1 TIGRFAM: Type II secretion system gspE; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; KEGG: mca:MCA1114 general secretion pathway protein E; SMART: ATPase, AAA+ type, core YP_004513360.1 PFAM: Protein of unknown function DUF2167, membrane; KEGG: pfl:PFL_1898 hypothetical protein YP_004513361.1 PFAM: Integrase, catalytic core; KEGG: ppr:PBPRB1144 transposase YP_004513362.1 KEGG: pna:Pnap_1740 transposase YP_004513363.1 KEGG: plm:Plim_3480 UspA domain protein YP_004513364.1 KEGG: mep:MPQ_2599 transcriptional regulator, crp/fnr family; PFAM: Cyclic nucleotide-binding; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding YP_004513366.1 KEGG: plm:Plim_0349 hypothetical protein YP_004513367.1 PFAM: Transposase, IS801/IS1294; KEGG: dat:HRM2_00150 transposase for insertion sequence 801 (transposase 32 family protein) YP_004513370.1 KEGG: hypothetical protein YP_004513371.1 PFAM: Filamentation induced by cAMP/death on curing, related; KEGG: acl:ACL_0438 Fic-domain-containing protein YP_004513372.1 PFAM: HEPN YP_004513373.1 PFAM: CsbD-like; KEGG: alv:Alvin_1144 CsbD family protein YP_004513374.1 KEGG: cli:Clim_0907 hypothetical protein YP_004513375.1 KEGG: lch:Lcho_4144 transposase IS3/IS911 family protein; manually curated; PFAM: Transposase IS3/IS911 YP_004513377.1 KEGG: neu:NE0538 outer membrane efflux protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004513378.1 KEGG: nmu:Nmul_A1841 secretion protein HlyD; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004513379.1 PFAM: Acriflavin resistance protein; KEGG: nmu:Nmul_A1842 acriflavin resistance protein YP_004513382.1 KEGG: pna:Pnap_1740 transposase YP_004513383.1 PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533; KEGG: dma:DMR_01230 transposase for insertion sequence element YP_004513385.1 KEGG: cvi:CV_0126 hypothetical protein YP_004513386.1 PFAM: RNA-directed DNA polymerase (reverse transcriptase); Group II intron, maturase-specific; KEGG: aca:ACP_3214 group II intron-encoded maturase YP_004513388.1 PFAM: PepSY-associated TM helix; KEGG: ccs:CCNA_01860 rare lipoprotein B precursor YP_004513389.1 PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; KEGG: pfs:PFLU2509 TonB-receptor protein YP_004513390.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: tgr:Tgr7_3076 transcriptional regulator YP_004513392.1 KEGG: nde:NIDE3241 multidrug resistance protein B; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004513393.1 KEGG: afr:AFE_0863 RND efflux system, drug efflux transporter, outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004513394.1 PFAM: Secretion protein HlyD; KEGG: nde:NIDE3239 multidrug resistance protein A YP_004513395.1 KEGG: mca:MCA2506 Rrf2 family protein; TIGRFAM: Transcriptional regulator, Rrf2; PFAM: Transcriptional regulator, Rrf2 YP_004513396.1 PFAM: Globin, truncated bacterial-like; KEGG: mca:MCA2507 hypothetical protein YP_004513397.1 PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD-binding region; KEGG: llo:LLO_2922 oxidoreductase FAD/NAD(P)-binding YP_004513398.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: hne:HNE_0571 rubredoxin YP_004513399.1 KEGG: gca:Galf_2474 hypothetical protein YP_004513400.1 KEGG: mca:MCA2401 hypothetical protein YP_004513401.1 KEGG: mca:MCA2400 nitric-oxide reductase, B subunit YP_004513402.1 KEGG: eba:ebB104 transposase, fragment YP_004513404.1 PFAM: Cell wall assembly/cell proliferation coordinating protein, KNR4-like; KEGG: bfs:BF1743 hypothetical protein YP_004513405.1 KEGG: mba:Mbar_A3399 hypothetical protein; TIGRFAM: RHS repeat-associated core domain; YD repeat; PFAM: Transglutaminase-like; Delta endotoxin, N-terminal; YD repeat YP_004513406.1 PFAM: Prenyltransferase/squalene oxidase; Thrombospondin, type 3-like repeat; KEGG: hau:Haur_2819 AAA ATPase YP_004513408.1 KEGG: ava:Ava_1652 O-methyltransferase; PFAM: O-methyltransferase, family 3 YP_004513409.1 PFAM: Carbonic anhydrase; KEGG: mca:MCA0910 carbonic anhydrase YP_004513410.1 PFAM: Secretion protein HlyD; KEGG: sfu:Sfum_2390 secretion protein HlyD family protein YP_004513411.1 PFAM: ABC transporter-like; KEGG: slt:Slit_2512 ABC transporter related protein; SMART: ATPase, AAA+ type, core YP_004513412.1 PFAM: ABC-2 type transporter; KEGG: afr:AFE_2863 ABC transporter, permease YP_004513413.1 PFAM: ABC-2 type transporter; KEGG: sfu:Sfum_2393 ABC-2 type transporter YP_004513414.1 PFAM: Xylose isomerase, TIM barrel domain; KEGG: vei:Veis_3271 xylose isomerase domain-containing protein YP_004513415.1 KEGG: mfa:Mfla_1761 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004513416.1 KEGG: mfa:Mfla_1762 periplasmic sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region YP_004513417.1 KEGG: meh:M301_0031 hypothetical protein YP_004513419.1 KEGG: nwa:Nwat_0215 hypothetical protein YP_004513420.1 TIGRFAM: ABC transporter, urea, substrate-binding, UrtA; KEGG: hch:HCH_04519 branched-chain amino acid ABC transporter periplasmic protein YP_004513421.1 KEGG: hel:HELO_2272 ABC-type transport system permease; TIGRFAM: ABC transporter, urea, permease, UrtB; PFAM: Bacterial inner-membrane translocator YP_004513422.1 KEGG: abo:ABO_2511 branched-chain amino acid ABC transporter, permease; TIGRFAM: ABC transporter, urea, permease, UrtC; PFAM: Bacterial inner-membrane translocator YP_004513423.1 TIGRFAM: ABC transporter, urea, ATP-binding protein, UrtD; KEGG: tau:Tola_1624 UreA ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter-like YP_004513424.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, urea, ATP-binding protein, UrtE; KEGG: tau:Tola_1623 UreA ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter-like YP_004513426.1 KEGG: tau:Tola_1622 urease accessory protein UreD; HAMAP: Urease accessory protein UreD; PFAM: Urease accessory protein UreD YP_004513427.1 PFAM: Urease, alpha/gamma subunit; TIGRFAM: Urease, alpha/gamma subunit; HAMAP: Urease, gamma subunit; KEGG: npu:Npun_F0823 urease subunit gamma YP_004513428.1 KEGG: sua:Saut_0090 hypothetical protein YP_004513429.1 PFAM: Urease, beta subunit; TIGRFAM: Urease, beta subunit; HAMAP: Urease subunit beta; KEGG: rpc:RPC_3695 urease subunit beta YP_004513430.1 PFAM: Amidohydrolase 1; Urease alpha-subunit, N-terminal; TIGRFAM: Urease, alpha subunit; HAMAP: Urease subunit alpha; KEGG: ttu:TERTU_4206 urease subunit alpha YP_004513431.1 KEGG: pin:Ping_2386 signal transduction protein YP_004513432.1 KEGG: psa:PST_1052 transposase and inactivated derivative YP_004513433.1 KEGG: kva:Kvar_0627 UreE urease accessory domain protein; HAMAP: Urease accessory protein ureE; PFAM: UreE urease accessory, C-terminal; UreE urease accessory, N-terminal YP_004513434.1 KEGG: aeh:Mlg_0186 urease accessory protein UreF; HAMAP: Urease accessory protein UreF; PFAM: Urease accessory protein UreF YP_004513435.1 TIGRFAM: Urease accessory protein UreG; HAMAP: Urease accessory protein UreG; KEGG: hch:HCH_04526 urease accessory protein UreG; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like YP_004513436.1 TIGRFAM: Iron-sulphur-dependent L-serine dehydratase single chain form; KEGG: mms:mma_3335 L-serine dehydratase; PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain YP_004513437.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: hse:Hsero_4138 GGDEF domain-containing protein; SMART: Diguanylate cyclase, predicted; GAF YP_004513438.1 KEGG: mca:MCA2485 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; TIGRFAM: Aconitase B, bacterial; PFAM: Aconitase B, N-terminal, bacterial; Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha YP_004513439.1 PFAM: Protein of unknown function DUF820; KEGG: nhl:Nhal_2824 protein of unknown function DUF820 YP_004513440.1 KEGG: mca:MCA3071 isocitrate dehydrogenase, NAD-dependent, PFAM: Isocitrate/isopropylmalate dehydrogenase YP_004513441.1 PFAM: ABC transporter-like; KEGG: ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004513442.1 KEGG: hypothetical protein YP_004513443.1 PFAM: Ion transport; KEGG: pca:Pcar_0515 ion transport protein YP_004513444.1 PFAM: YkuD domain; Peptidoglycan binding-like; KEGG: mca:MCA1003 hypothetical protein YP_004513445.1 PFAM: Protein of unknown function DUF882, bacterial; KEGG: aeh:Mlg_1034 hypothetical protein YP_004513446.1 PFAM: Aminotransferase class-III; TIGRFAM: Acetylornithine/succinylornithine aminotransferase; HAMAP: Acetylornithine/succinyldiaminopimelate aminotransferase; KEGG: mca:MCA2079 acetylornithine aminotransferase YP_004513447.1 PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; TIGRFAM: Ornithine carbamoyltransferase; HAMAP: Ornithine carbamoyltransferase; KEGG: mca:MCA2080 ornithine carbamoyltransferase YP_004513448.1 SMART: Bacterial SH3-like region; KEGG: nhl:Nhal_3273 SH3 type 3 domain protein YP_004513449.1 PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; TIGRFAM: Dihydroxy-acid dehydratase; HAMAP: Dihydroxy-acid dehydratase; KEGG: aav:Aave_1506 dihydroxy-acid dehydratase YP_004513450.1 PFAM: ATPase associated with various cellular activities, AAA-4; KEGG: gfo:GFO_1196 divergent AAA domain-containing protein YP_004513451.1 KEGG: rpt:Rpal_4028 hypothetical protein YP_004513452.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; HAMAP: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; KEGG: cni:Calni_0302 udp-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; Bacterial transferase hexapeptide repeat YP_004513453.1 TIGRFAM: Ribose 5-phosphate isomerase; KEGG: meh:M301_1566 ribose 5-phosphate isomerase; PFAM: Ribose 5-phosphate isomerase YP_004513454.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: neu:NE1536 TonB-dependent receptor protein YP_004513455.1 KEGG: hch:HCH_03572 BNR/Asp-box repeat-containing protein YP_004513456.1 PFAM: Protein of unknown function DUF861, cupin-3; KEGG: mep:MPQ_1489 hypothetical protein YP_004513457.1 KEGG: ant:Arnit_2252 lipopolysaccharide heptosyltransferase I; TIGRFAM: Lipopolysaccharide heptosyltransferase I; PFAM: Glycosyl transferase, family 9 YP_004513458.1 KEGG: ppw:PputW619_4862 lipopolysaccharide heptosyltransferase II; TIGRFAM: Lipopolysaccharide heptosyltransferase II; PFAM: Glycosyl transferase, family 9 YP_004513459.1 TIGRFAM: Branched-chain amino acid aminotransferase I; KEGG: mca:MCA2344 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV YP_004513461.1 PFAM: Peptidase M48, Ste24p; KEGG: app:CAP2UW1_1582 peptidase M48 Ste24p YP_004513462.1 PFAM: Heat shock protein Hsp20; KEGG: cni:Calni_1043 heat shock protein HSP20 YP_004513463.1 KEGG: ttu:TERTU_1565 hypothetical protein YP_004513464.1 KEGG: gca:Galf_2013 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain YP_004513465.1 KEGG: dar:Daro_0704 response regulator receiver:transcriptional regulatory protein, C-terminal; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004513466.1 KEGG: she:Shewmr4_0253 protein of unknown function, Spy-related YP_004513467.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: sfr:Sfri_1812 hypothetical protein YP_004513468.1 PFAM: ABC transporter-like; KEGG: sfu:Sfum_1083 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004513469.1 KEGG: hna:Hneap_0782 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004513470.1 KEGG: sat:SYN_00851 type I secretion outer membrane protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004513471.1 KEGG: mca:MCA1811 hypothetical protein YP_004513472.1 PFAM: EF-Hand domain; KEGG: azo:azo3617 calcium binding protein YP_004513474.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mca:MCA2593 carboxynorspermidine decarboxylase YP_004513475.1 KEGG: rba:RB5405 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase YP_004513476.1 PFAM: tRNA isopentenyltransferase; Isopentenyl transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: mca:MCA1691 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA dimethylallyltransferase YP_004513477.1 TIGRFAM: DNA mismatch repair protein, N-terminal; HAMAP: DNA mismatch repair protein mutL; KEGG: mca:MCA1692 DNA mismatch repair protein; PFAM: MutL, C-terminal, dimerisation; DNA mismatch repair protein, C-terminal; ATP-binding region, ATPase-like YP_004513478.1 KEGG: nhl:Nhal_3430 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; Peptidoglycan-binding lysin domain; SMART: Cell wall hydrolase/autolysin, catalytic; Peptidoglycan-binding Lysin subgroup YP_004513479.1 KEGG: ddd:Dda3937_00438 ATPase with strong ADP affinity; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria YP_004513480.1 KEGG: tgr:Tgr7_0892 carbohydrate kinase, YjeF related protein; TIGRFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal; PFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal YP_004513481.1 KEGG: alv:Alvin_1059 iron-sulfur cluster binding protein; TIGRFAM: 4Fe-4S cluster binding; PFAM: Domain of unknown function DUF1730; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup YP_004513482.1 KEGG: alv:Alvin_0361 aminotransferase class I and II protein; PFAM: Aminotransferase, class I/II YP_004513483.1 PFAM: Protein of unknown function DUF88; KEGG: shn:Shewana3_1080 hypothetical protein YP_004513484.1 KEGG: gsu:GSU1328 hypothetical protein; HAMAP: Protein of unknown function DUF1255; PFAM: Protein of unknown function DUF1255 YP_004513485.1 PFAM: rRNA methylase; KEGG: rmr:Rmar_1203 rRNA methylase YP_004513486.1 PFAM: FAD dependent oxidoreductase; KEGG: rbi:RB2501_09025 hypothetical protein YP_004513487.1 PFAM: HopJ type III effector protein; KEGG: fba:FIC_00454 type III effector HopPmaJ YP_004513488.1 PFAM: Polysaccharide export protein; KEGG: nhl:Nhal_3337 polysaccharide export protein YP_004513489.1 KEGG: nhl:Nhal_3336 hypothetical protein YP_004513490.1 PFAM: Lipopolysaccharide biosynthesis; KEGG: nde:NIDE2408 lipopolysaccharide biosynthesis protein YP_004513491.1 TIGRFAM: Exopolysaccharide synthesis protein; KEGG: nhl:Nhal_3333 tyrosine-protein kinase YP_004513492.1 PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; KEGG: nde:NIDE2405 hypothetical protein YP_004513493.1 KEGG: mca:MCA0039 dihydroxyacetone phosphatase; TIGRFAM: Dihydroxyacetone kinase, subunit L; PFAM: Dak phosphatase YP_004513494.1 TIGRFAM: Dihydroxyacetone kinase DhaK, subunit 1; KEGG: mca:MCA0040 dihydroxyacetone kinase; PFAM: Dak kinase YP_004513495.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; KEGG: tra:Trad_1483 HAD-superfamily hydrolase; PFAM: Haloacid dehalogenase-like hydrolase YP_004513496.1 PFAM: Autotransporter beta-domain; KEGG: nde:NIDE2008 outer membrane autotransporter YP_004513497.1 KEGG: nhl:Nhal_0827 hypothetical protein YP_004513498.1 PFAM: WD40 repeat, subgroup; KEGG: mac:MA2525 WD-40 repeat-containing protein YP_004513499.1 SMART: Toll-Interleukin receptor; KEGG: app:CAP2UW1_3023 hypothetical protein YP_004513500.1 PFAM: NUDIX hydrolase domain; KEGG: mca:MCA0519 MutT/NUDIX family protein YP_004513501.1 PFAM: Histone deacetylase superfamily; KEGG: mca:MCA2486 histone deacetylase/AcuC/AphA family protein YP_004513502.1 KEGG: cps:CPS_2544 cytochrome P460 YP_004513504.1 PFAM: Carbon starvation protein CstA; KEGG: mca:MCA2607 carbon starvation protein CstA YP_004513506.1 KEGG: kko:Kkor_2085 pyridoxal-5'-phosphate-dependent enzyme, beta subunit YP_004513507.1 PFAM: Dihydropteroate synthase, DHPS; manually curated; KEGG: alv:Alvin_2126 dihydropteroate synthase; TIGRFAM: Dihydropteroate synthase YP_004513508.1 PFAM: Protein of unknown function DUF87; KEGG: mca:MCA1687 hypothetical protein YP_004513509.1 PFAM: Protein of unknown function DUF539; KEGG: mca:MCA2383 hypothetical protein YP_004513510.1 PFAM: Oxidoreductase FAD/NAD(P)-binding; Ferredoxin; Oxidoreductase FAD-binding region; TIGRFAM: NADH-quinone reductase, Na(+)-translocating, F subunit; HAMAP: Na(+)-translocating NADH-quinone reductase subunit F; KEGG: mca:MCA2384 Na(+)-translocating NADH-quinone reductase subunit F YP_004513511.1 TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit; HAMAP: Na(+)-translocating NADH-quinone reductase subunit E; KEGG: mca:MCA2385 Na(+)-translocating NADH-quinone reductase subunit E; PFAM: Electron transport complex, Rnf/Nqr YP_004513512.1 KEGG: mca:MCA2386 Na(+)-translocating NADH-quinone reductase subunit D; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit; PFAM: Electron transport complex, Rnf/Nqr YP_004513513.1 KEGG: mca:MCA2387 Na(+)-translocating NADH-quinone reductase subunit C; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit; PFAM: FMN-binding YP_004513514.1 KEGG: mca:MCA2388 Na(+)-translocating NADH-quinone reductase subunit B; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit; PFAM: NADH-quinone reductase NQR2/RnfD YP_004513515.1 TIGRFAM: Na-translocating NADH-quinone reductase subunit A; HAMAP: Na(+)-translocating NADH-quinone reductase subunit A; KEGG: mca:MCA2389 Na(+)-translocating NADH-quinone reductase subunit A; PFAM: Na-translocating NADH-quinone reductase subunit A YP_004513516.1 PFAM: Metallophosphoesterase; KEGG: pnu:Pnuc_0863 metallophosphoesterase YP_004513517.1 TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; HAMAP: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; KEGG: mca:MCA2483 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type YP_004513518.1 PFAM: NnrS; KEGG: tbd:Tbd_1409 hypothetical protein YP_004513519.1 PFAM: Protein of unknown function DUF455; KEGG: mca:MCA2484 hypothetical protein YP_004513520.1 PFAM: Peptidase M48, Ste24p; KEGG: peptidase M48 ste24p YP_004513521.1 PFAM: Sporulation/cell division region, bacteria; KEGG: sus:Acid_4099 sporulation domain-containing protein YP_004513522.1 SMART: Polymerase/histidinol phosphatase, N-terminal; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: mca:MCA1286 DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type YP_004513523.1 KEGG: psm:PSM_A2079 RNAse HII; PFAM: Ribonuclease HII/HIII YP_004513524.1 TIGRFAM: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; HAMAP: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: mca:MCA2444 UDP-N-acetylglucosamine acyltransferase YP_004513525.1 TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; HAMAP: (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; KEGG: mca:MCA2445 (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ YP_004513526.1 PFAM: Outer membrane chaperone Skp (OmpH); KEGG: mca:MCA2446 outer membrane protein OmpH YP_004513527.1 KEGG: mca:MCA2447 OMP85 family outer membrane protein; TIGRFAM: Outer membrane assembly protein, YaeT; PFAM: Bacterial surface antigen (D15); Surface antigen variable number YP_004513528.1 PFAM: Flavocytochrome c sulphide dehydrogenase, flavin-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cte:CT2081 sulfide dehydrogenase, flavoprotein subunit YP_004513529.1 KEGG: tin:Tint_2898 cytochrome c class I YP_004513530.1 KEGG: mca:MCA1975 RNA methyltransferase; TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding YP_004513531.1 TIGRFAM: Ribonuclease R, bacterial; Ribonuclease II/ribonuclease R, bacteria; PFAM: Ribonuclease II/R; Ribonuclease B, OB region N-terminal; Ribonuclease R winged-helix domain; Ribosomal protein S1, RNA binding domain; KEGG: mca:MCA1976 ribonuclease R; SMART: Cold shock protein YP_004513532.1 KEGG: meh:M301_2440 hypothetical protein YP_004513533.1 KEGG: xop:PXO_00870 hypothetical protein YP_004513534.1 PFAM: Protein of unknown function DUF748; KEGG: pen:PSEEN4740 hypothetical protein YP_004513536.1 KEGG: mca:MCA1817 heat shock protein 15; PFAM: RNA-binding S4; SMART: RNA-binding S4 YP_004513537.1 KEGG: mca:MCA1816 rhodanese-like domain-containing protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_004513538.1 PFAM: LytB protein; TIGRFAM: LytB protein; HAMAP: LytB protein; KEGG: mca:MCA1815 hydroxymethylbutenyl pyrophosphate reductase YP_004513539.1 TIGRFAM: Ribonuclease E inhibitor RraA; HAMAP: Ribonuclease E inhibitor RraA; KEGG: mca:MCA1813 ribonuclease activity regulator protein RraA; PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase YP_004513540.1 PFAM: Peptidase U32; KEGG: mca:MCA1812 U32 family peptidase YP_004513541.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; KEGG: ppw:PputW619_1394 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related YP_004513542.1 TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; KEGG: meh:M301_1165 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase YP_004513543.1 TIGRFAM: dTDP-4-dehydrorhamnose reductase; KEGG: meh:M301_1164 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase YP_004513544.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; KEGG: ppg:PputGB1_1380 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004513545.1 PFAM: ATP-binding region, ATPase-like; KEGG: cja:CJA_1810 sensor histidine kinase YP_004513546.1 KEGG: rfr:Rfer_0477 response regulator receiver domain-containing protein; PFAM: Signal transduction response regulator, receiver region; Tetratricopeptide TPR-4; Tetratricopeptide TPR2; SMART: Signal transduction response regulator, receiver region; Tetratricopeptide repeat YP_004513547.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cja:CJA_0478 acetyltransferase, GNAT family YP_004513548.1 PFAM: Addiction module component, CHP02574; KEGG: cph:Cpha266_0253 addiction module component YP_004513550.1 KEGG: sde:Sde_2333 hypothetical protein YP_004513551.1 PFAM: Acylneuraminate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; HAMAP: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: ctu:Ctu_15240 3-deoxy-manno-octulosonate cytidylyltransferase YP_004513552.1 KEGG: tmz:Tmz1t_3214 protein of unknown function DUF343; HAMAP: UPF0434 protein ycaR; PFAM: Protein of unknown function DUF343 YP_004513553.1 PFAM: Tetraacyldisaccharide 4'-kinase; TIGRFAM: Tetraacyldisaccharide 4'-kinase; HAMAP: Tetraacyldisaccharide 4'-kinase; KEGG: nhl:Nhal_0526 tetraacyldisaccharide 4'-kinase YP_004513554.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: avn:Avin_14750 biopolymer transport protein ExbD YP_004513555.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: nhl:Nhal_0529 MotA/TolQ/ExbB proton channel YP_004513556.1 PFAM: Major facilitator superfamily MFS-1; KEGG: nwa:Nwat_0285 major facilitator superfamily protein YP_004513557.1 TIGRFAM: Chorismate synthase; KEGG: maq:Maqu_1568 chorismate synthase; PFAM: Chorismate synthase YP_004513558.1 TIGRFAM: Ribosomal protein L3-specific, glutamine-N5-methyltransferase; Modification methylase HemK; KEGG: mca:MCA0701 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; PFAM: Methyltransferase small YP_004513559.1 KEGG: hch:HCH_05853 signal transduction protein; TIGRFAM: HDIG; PFAM: Metal-dependent hydrolase HDOD YP_004513560.1 TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: aav:Aave_0770 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_004513561.1 KEGG: alv:Alvin_2150 bis(5'nucleosyl)-tetraphosphatase ApaH YP_004513562.1 KEGG: avn:Avin_48710 hypothetical protein YP_004513563.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: avn:Avin_48700 metallocluster binding protein of the NafY/NifY/NifX/VnfX family YP_004513564.1 TIGRFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; KEGG: mca:MCA2479 oxaloacetate decarboxylase, beta subunit; PFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit YP_004513565.1 TIGRFAM: Oxaloacetate decarboxylase, alpha subunit; KEGG: mca:MCA2480 oxaloacetate decarboxylase; PFAM: Conserved carboxylase region; Pyruvate carboxyltransferase; Biotin/lipoyl attachment YP_004513566.1 manually curated; TIGRFAM: Sodium ion-translocating decarboxylase; KEGG: kko:Kkor_1244 sodium pump decarboxylase, gamma subunit; PFAM: Sodium ion-translocating decarboxylase YP_004513567.1 PFAM: Carbohydrate/purine kinase; KEGG: mca:MCA0970 carbohydrate kinase YP_004513568.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: azl:AZL_c04930 transcriptional regulator YP_004513569.1 TIGRFAM: Penicillin-binding protein 1C; KEGG: penicillin-binding protein 1C; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; Penicillin-binding, C-terminal YP_004513570.1 TIGRFAM: Ammonium transporter; PAS; Diguanylate cyclase, predicted; PFAM: Ammonium transporter; PAS fold; Diguanylate cyclase, predicted; Diguanylate phosphodiesterase, predicted; KEGG: mmw:Mmwyl1_3988 PAS/PAC and GAF sensor(S)-containing diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS YP_004513571.1 KEGG: eba:p1B277 transposase YP_004513572.1 PFAM: Nucleotide-binding protein, predicted, TIR-like; KEGG: pin:Ping_2305 nucleic acid-binding protein YP_004513573.1 KEGG: ttu:TERTU_1636 ribonucleotide reductase, alpha subunit YP_004513575.1 TIGRFAM: Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; KEGG: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: Ribonucleotide reductase large subunit, C-terminal YP_004513576.1 KEGG: cyn:Cyan7425_5008 non-specific serine/threonine protein kinase; PFAM: SNF2-related; DNA/RNA helicase, C-terminal; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal YP_004513577.1 TIGRFAM: Succinyl-CoA ligase, alpha subunit; KEGG: nmu:Nmul_A1080 succinyl-CoA synthetase subunit alpha; PFAM: CoA-binding; ATP-citrate lyase/succinyl-CoA ligase YP_004513578.1 PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; ATP-citrate lyase/succinyl-CoA ligase; TIGRFAM: Succinyl-CoA synthetase, beta subunit; HAMAP: Succinyl-CoA ligase [ADP-forming] subunit beta; KEGG: nmu:Nmul_A1079 malate--CoA ligase subunit beta YP_004513579.1 KEGG: net:Neut_0607 citryl-CoA lyase; PFAM: HpcH/HpaI aldolase YP_004513581.1 KEGG: mca:MCA1406 serine--glyoxylate aminotransferase; PFAM: Aminotransferase, class V/Cysteine desulfurase YP_004513582.1 manually curated YP_004513583.1 PFAM: Major facilitator superfamily MFS-1; KEGG: har:HEAR3449 major facilitator superfamily permease YP_004513584.1 PFAM: PEP-CTERM bacterial YP_004513585.1 KEGG: mca:MCA0444 hypothetical protein YP_004513586.1 KEGG: mca:MCA1407 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region YP_004513587.1 PFAM: PEP-CTERM bacterial YP_004513588.1 PFAM: PEP-CTERM bacterial YP_004513589.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: mca:MCA2590 cytochrome c peroxidase YP_004513590.1 PFAM: Sulfotransferase; KEGG: pla:Plav_1288 sulfotransferase YP_004513591.1 KEGG: nhl:Nhal_2591 hypothetical protein YP_004513592.1 KEGG: nhl:Nhal_2590 arginine decarboxylase YP_004513593.1 PFAM: Redoxin; KEGG: noc:Noc_1223 hypothetical protein YP_004513594.1 KEGG: nwa:Nwat_1109 hypothetical protein YP_004513595.1 manually curated; KEGG: noc:Noc_1221 hypothetical protein YP_004513596.1 PFAM: PEP-CTERM bacterial YP_004513597.1 KEGG: nhl:Nhal_2592 ApbE family lipoprotein; manually curated; PFAM: ApbE-like lipoprotein YP_004513598.1 TIGRFAM: Malate dehydrogenase, NAD/NADP; HAMAP: Malate dehydrogenase; KEGG: tra:Trad_2990 malate dehydrogenase; PFAM: Lactate/malate dehydrogenase YP_004513599.1 KEGG: mca:MCA0508 methylenetetrahydromethanopterin dehydrogenase/methylenetetrahydrofolate dehydrogenase; PFAM: Methylene-tetrahydromethanopterin dehydrogenase, N-terminal YP_004513600.1 KEGG: sit:TM1040_3471 hydroxypyruvate reductase; PFAM: MOFRL YP_004513601.1 KEGG: hch:HCH_03860 serine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase YP_004513602.1 PFAM: Cytochrome c, class I; KEGG: hch:HCH_04215 hypothetical protein YP_004513603.1 KEGG: mfa:Mfla_0012 hypothetical protein YP_004513604.1 PFAM: Dienelactone hydrolase; KEGG: gsu:GSU2536 dienelactone hydrolase YP_004513606.1 PFAM: Flavin reductase-like, FMN-binding; KEGG: msl:Msil_3722 flavin reductase domain protein FMN-binding YP_004513607.1 TIGRFAM: HAD-superfamily hydrolase, superfamily IIB, YedP; HAD-superfamily hydrolase, subfamily IIB; KEGG: pin:Ping_2602 mannosyl-3-phosphoglycerate phosphatase; PFAM: HAD superfamily hydrolase-like, type 3 YP_004513608.1 KEGG: amc:MADE_02160 cell wall biogenesis glycosyltransferase YP_004513609.1 PFAM: Glycosyl hydrolase, family 13, catalytic region; KEGG: sfr:Sfri_2846 alpha amylase, catalytic region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region YP_004513610.1 KEGG: ppg:PputGB1_1816 anti-FecI sigma factor, FecR; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004513611.1 KEGG: neu:NE2165 TonB-dependent receptor protein; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel YP_004513612.1 PFAM: FecR protein; KEGG: mms:mma_1214 Fe2+-dicitrate sensor, membrane component YP_004513613.1 KEGG: psa:PST_4176 ECF subfamily RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004513614.1 KEGG: ppf:Pput_3545 anti-FecI sigma factor, FecR; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004513616.1 manually curated; TIGRFAM: Addiction module toxin, RelE/StbE; KEGG: tin:Tint_3241 addiction module toxin, RelE/StbE family; PFAM: Plasmid stabilisation system YP_004513617.1 KEGG: antitoxin of a toxin/antitoxin system YP_004513618.1 PFAM: FecR protein; KEGG: mms:mma_1234 Fe2+-dicitrate sensor, membrane component YP_004513619.1 KEGG: psa:PST_4176 ECF subfamily RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004513620.1 KEGG: ter:Tery_4268 2,3-dimethylmalate lyase; PFAM: Isocitrate lyase/phosphorylmutase YP_004513621.1 PFAM: Major facilitator superfamily MFS-1; KEGG: mei:Msip34_2767 major facilitator superfamily MFS_1 YP_004513625.1 manually curated; KEGG: spl:Spea_2925 hypothetical protein YP_004513626.1 PFAM: YkuD domain; KEGG: kko:Kkor_2536 hypothetical protein YP_004513627.1 KEGG: ctt:CtCNB1_0936 hypothetical protein YP_004513628.1 KEGG: ttu:TERTU_1544 hypothetical protein YP_004513629.1 PFAM: Protein of unknown function DUF1287; KEGG: kko:Kkor_0107 protein of unknown function DUF1287 YP_004513630.1 KEGG: lbf:LBF_2417 hypothetical protein YP_004513631.1 TIGRFAM: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; KEGG: mca:MCA0753 phosphoglyceromutase; PFAM: BPG-independent PGAM, N-terminal; Metalloenzyme YP_004513632.1 PFAM: Acriflavin resistance protein; KEGG: mca:MCA0079 AcrB/AcrD/AcrF family protein YP_004513633.1 KEGG: mfa:Mfla_1260 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; SMART: Tetratricopeptide repeat; Sel1-like YP_004513634.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; KEGG: gca:Galf_2779 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; SMART: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region YP_004513635.1 KEGG: azo:azo2288 HD-domain-containing protein; TIGRFAM: HDIG; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain YP_004513636.1 TIGRFAM: DNA helicase, DnaB type; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal; KEGG: mca:MCA1735 replicative DNA helicase; SMART: ATPase, AAA+ type, core YP_004513637.1 PFAM: Alanine racemase, N-terminal; Alanine racemase, C-terminal; TIGRFAM: Alanine racemase; HAMAP: Alanine racemase; KEGG: mca:MCA1734 alanine racemase YP_004513638.1 KEGG: ppd:Ppro_3210 hypothetical protein YP_004513640.1 KEGG: epy:EpC_06680 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: ATPase, AAA+ type, core YP_004513641.1 PFAM: Spermine synthase; KEGG: nwa:Nwat_1114 hypothetical protein YP_004513642.1 KEGG: net:Neut_1920 PEP motif-containing protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004513643.1 PFAM: PEP-CTERM bacterial; KEGG: mfa:Mfla_2195 hypothetical protein YP_004513645.1 PFAM: Type IV pilus assembly PilZ; KEGG: pst:PSPTO_4639 hypothetical protein YP_004513646.1 PFAM: Forkhead-associated; KEGG: slt:Slit_0532 FHA domain containing protein YP_004513647.1 TIGRFAM: Phosphate acetyltransferase; KEGG: sfu:Sfum_1472 phosphate acetyltransferase; PFAM: Phosphate acetyl/butaryl transferase; DRTGG YP_004513648.1 KEGG: mfa:Mfla_0366 hypothetical protein YP_004513649.1 PFAM: Acetate/butyrate kinase; TIGRFAM: Acetate kinase; HAMAP: Acetate kinase; KEGG: nhl:Nhal_3094 acetate kinase YP_004513650.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: pfs:PFLU5794 hypothetical protein YP_004513653.1 KEGG: mca:MCA2977 sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like YP_004513654.1 KEGG: mca:MCA2976 DNA binding response regulator; PFAM: Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region YP_004513655.1 PFAM: VanZ like protein; KEGG: dat:HRM2_37650 hypothetical protein YP_004513656.1 PFAM: Dihydroorotate dehydrogenase, class 1/ 2; KEGG: tbd:Tbd_2467 dihydroorotate dehydrogenase 2 YP_004513657.1 TIGRFAM: Pyruvate-flavodoxin oxidoreductase; KEGG: alv:Alvin_0264 pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate/ketoisovalerate oxidoreductase; Pyruvate-flavodoxin oxidoreductase, EKR domain; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_004513658.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: mca:MCA2459 CsgA protein YP_004513660.1 KEGG: pfl:PFL_2484 hypothetical protein YP_004513663.1 KEGG: tgr:Tgr7_1360 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; SMART: HTH transcriptional regulator, Crp YP_004513664.1 KEGG: hch:HCH_04984 CBS domain-containing protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core YP_004513665.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: mmw:Mmwyl1_3755 signal transduction protein YP_004513666.1 KEGG: sfr:Sfri_2495 hypothetical protein YP_004513667.1 KEGG: mca:MCA1689 hypothetical protein YP_004513668.1 KEGG: mca:MCA1688 hypothetical protein YP_004513669.1 TIGRFAM: Cysteine synthase A; Cysteine synthase K/M; KEGG: sth:STH1137 cysteine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004513670.1 SMART: PDZ/DHR/GLGF; TIGRFAM: Peptidase S1C, Do; KEGG: mca:MCA1467 serine protease, MucD; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF YP_004513671.1 PFAM: MucB/RseB; KEGG: mca:MCA1469 sigma-E factor regulatory protein YP_004513672.1 KEGG: alv:Alvin_1725 anti sigma-E protein RseA YP_004513673.1 KEGG: mca:MCA1471 RNA polymerase sigma factor RpoE; TIGRFAM: RNA polymerase sigma-70 RpoE type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004513674.1 TIGRFAM: L-aspartate oxidase; KEGG: mca:MCA1472 L-aspartate oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal YP_004513675.1 KEGG: mca:MCA1123 general secretion pathway protein D; TIGRFAM: Type II secretion system gspD; PFAM: Type II/III secretion system; NolW-like YP_004513677.1 PFAM: General secretion pathway protein M; KEGG: mca:MCA1122 general secretion pathway protein YP_004513678.1 PFAM: Fimbrial assembly; KEGG: mca:MCA1121 general secretion pathway protein L YP_004513679.1 KEGG: mca:MCA1120 general secretion pathway protein K YP_004513680.1 KEGG: nhl:Nhal_3653 general secretion pathway protein J YP_004513681.1 KEGG: nhl:Nhal_0443 general secretion pathway protein H YP_004513682.1 TIGRFAM: General secretion pathway protein H; Prepilin-type cleavage/methylation, N-terminal; KEGG: noc:Noc_2892 general secretion pathway protein H YP_004513683.1 KEGG: mca:MCA1116 general secretion pathway protein G; TIGRFAM: General secretion pathway protein G; Prepilin-type cleavage/methylation, N-terminal; PFAM: Type II secretion system protein G; Prepilin-type cleavage/methylation, N-terminal YP_004513684.1 PFAM: Type II secretion system F domain; KEGG: mca:MCA1115 general secretion pathway protein F YP_004513685.1 TIGRFAM: HflC; PFAM: Band 7 protein; KEGG: mca:MCA0314 HflC protein, SMART: Band 7 protein YP_004513686.1 TIGRFAM: HflK; PFAM: Band 7 protein; KEGG: mca:MCA0313 HflK protein, SMART: Band 7 protein YP_004513687.1 KEGG: pag:PLES_44811 peptidyl-prolyl cis-trans isomerase SlyD; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type YP_004513688.1 PFAM: Transcription elongation factor, GreA/GreB region, prokaryotic; KEGG: transcription elongation factor GreB YP_004513689.1 KEGG: eba:p1B277 transposase YP_004513691.1 KEGG: gpb:HDN1F_07110 hypothetical protein YP_004513692.1 KEGG: gca:Galf_0729 hypothetical protein YP_004513693.1 KEGG: nhl:Nhal_3522 hypothetical protein YP_004513694.1 KEGG: nhl:Nhal_3521 hypothetical protein YP_004513695.1 KEGG: psl:Psta_3425 hypothetical protein YP_004513696.1 KEGG: gpb:HDN1F_07090 hypothetical protein YP_004513697.1 KEGG: gpb:HDN1F_07070 superfamily II DNA/RNA helicases, SNF2 family; PFAM: DNA/RNA helicase, C-terminal; SNF2-related; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004513698.1 PFAM: Transposase, IS4-like; KEGG: mac:MA1045 transposase YP_004513699.1 TIGRFAM: Transcription elongation factor GreB, prokaryotic; HAMAP: Transcription elongation factor greA; KEGG: enc:ECL_04771 transcription elongation factor GreB; PFAM: Transcription elongation factor, GreA/GreB region, prokaryotic YP_004513700.1 KEGG: spc:Sputcn32_3808 hypothetical protein YP_004513701.1 PFAM: Integrase, catalytic core, phage; KEGG: spc:Sputcn32_3807 phage integrase YP_004513702.1 PFAM: Integrase, catalytic core, phage; KEGG: psm:PSM_A2937 phage integrase YP_004513703.1 PFAM: Transcription elongation factor, GreA/GreB region, prokaryotic; KEGG: hch:HCH_00585 transcription elongation factor GreB YP_004513704.1 KEGG: mca:MCA0175 hypothetical protein YP_004513705.1 PFAM: AIG2-like; KEGG: rpb:RPB_4134 hypothetical protein YP_004513706.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold; KEGG: mmb:Mmol_0141 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; PAC motif YP_004513707.1 KEGG: gbm:Gbem_4009 hemerythrin family protein; TIGRFAM: Haemerythrin-like, metal-binding; PFAM: Haemerythrin/HHE cation-binding motif YP_004513708.1 TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; HAMAP: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: kko:Kkor_2277 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase YP_004513709.1 KEGG: amr:AM1_0120 hypothetical protein YP_004513710.1 PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein; TIGRFAM: Phosphoribosylformylglycinamidine synthase, eukaryote/proteobacteria; HAMAP: Phosphoribosylformylglycinamidine synthase; KEGG: mca:MCA0673 phosphoribosylformylglycinamidine synthase YP_004513711.1 KEGG: mca:MCA0672 lipoprotein YP_004513712.1 TIGRFAM: Dihydrodipicolinate synthase subfamily; HAMAP: Dihydrodipicolinate synthase; KEGG: mca:MCA0671 dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase YP_004513713.1 KEGG: amr:AM1_1179 YaiI/YqxD family protein; HAMAP: Protein of unknown function DUF188; PFAM: Protein of unknown function DUF188 YP_004513714.1 KEGG: hor:Hore_18810 phosphoesterase PA-phosphatase related; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase YP_004513715.1 KEGG: tye:THEYE_A0589 hypothetical protein YP_004513716.1 KEGG: pap:PSPA7_1395 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1 YP_004513717.1 KEGG: gpb:HDN1F_22470 threonine synthase; TIGRFAM: Threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004513718.1 KEGG: mca:MCA0597 homoserine dehydrogenase; PFAM: Homoserine dehydrogenase, catalytic; Aspartate/homoserine dehydrogenase, NAD-binding; Amino acid-binding ACT YP_004513719.1 KEGG: tgr:Tgr7_1438 aminotransferase class I and II; PFAM: Aminotransferase, class I/II YP_004513720.1 KEGG: mca:MCA1978 adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; TIGRFAM: Adenylosuccinate synthetase; HAMAP: Adenylosuccinate synthetase; SMART: Adenylosuccinate synthetase YP_004513721.1 TIGRFAM: Histidyl-tRNA synthetase, class IIa, HAMAP: ATP phosphoribosyltransferase regulatory subunit; KEGG: aeh:Mlg_0577 ATP phosphoribosyltransferase regulatory subunit; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region YP_004513722.1 TIGRFAM: HflC; PFAM: Band 7 protein; KEGG: mca:MCA1980 HflC protein; SMART: Band 7 protein YP_004513723.1 TIGRFAM: HflK; PFAM: Band 7 protein; KEGG: mca:MCA1981 HflK protein; SMART: Band 7 protein YP_004513724.1 KEGG: cja:CJA_3078 hypothetical protein; TIGRFAM: GTP-binding protein, HflX; PFAM: GTP-binding protein, HSR1-related YP_004513725.1 TIGRFAM: Host factor Hfq; HAMAP: Protein hfq; KEGG: mca:MCA1983 hfq protein; PFAM: Like-Sm ribonucleoprotein, core YP_004513726.1 TIGRFAM: ATP-binding cassette protein, ChvD family; PFAM: ABC transporter-like; KEGG: alv:Alvin_0632 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004513728.1 PFAM: Deoxyribonuclease, TatD-related; KEGG: TatD-related deoxyribonuclease YP_004513729.1 PFAM: UBA/THIF-type NAD/FAD binding fold; KEGG: lby:Lbys_1163 uba/ThiF-type nad/fad binding protein YP_004513731.1 KEGG: bvi:Bcep1808_6033 ModE family transcriptional regulator; TIGRFAM: Molybdenum-pterin binding; PFAM: HTH transcriptional regulator, LysR; Transport-associated OB, type 1 YP_004513732.1 PFAM: Protein of unknown function, inner membrane,YgjV; KEGG: sus:Acid_3678 hypothetical protein YP_004513733.1 KEGG: sse:Ssed_2614 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004513734.1 PFAM: Invasion gene expression up-regulator, SirB; KEGG: aha:AHA_0341 SirB family protein YP_004513735.1 KEGG: rme:Rmet_1823 heat shock protein DnaJ-like protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal YP_004513736.1 KEGG: azo:azo2922 hypothetical protein; TIGRFAM: bacteriocin propeptide, TIGR03798 family; PFAM: Protein of unknown function, nitrogen fixation YP_004513737.1 PFAM: ATPase, AAA-type, core; KEGG: avn:Avin_18070 ATPase, AAA superfamily YP_004513738.1 PFAM: Cysteine-rich region, CCG; KEGG: avn:Avin_03450 hypothetical protein YP_004513739.1 KEGG: avn:Avin_40900 hypothetical protein YP_004513740.1 PFAM: GCN5-related N-acetyltransferase; KEGG: avn:Avin_46600 GCN5-related N-acetyltransferase YP_004513741.1 KEGG: neu:NE0554 ECF subfamily RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004513742.1 PFAM: FecR protein; KEGG: rsk:RSKD131_4269 FecR YP_004513743.1 KEGG: neu:NE0546 TonB-dependent receptor protein; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal YP_004513744.1 PFAM: PilT protein, N-terminal; KEGG: pph:Ppha_0188 PilT protein domain protein YP_004513746.1 KEGG: mca:MCA0441 TonB domain-containing protein; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein YP_004513747.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: mca:MCA0669 MotA/TolQ/ExbB proton channel family protein YP_004513748.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mfa:Mfla_1558 biopolymer transport protein ExbD/TolR YP_004513749.1 KEGG: nde:NIDE2175 RNA polymerase sigma factor FecI (sigma-19); TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004513750.1 PFAM: FecR protein; KEGG: nde:NIDE2174 ferric citrate sensor FecR YP_004513751.1 KEGG: neu:NE0546 TonB-dependent receptor protein; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal YP_004513752.1 PFAM: PepSY-associated TM helix; KEGG: net:Neut_1727 PepSY-associated TM helix domain-containing protein YP_004513753.1 KEGG: neu:NE0136 hypothetical protein YP_004513754.1 KEGG: mfa:Mfla_1560 TonB-like protein; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein YP_004513755.1 KEGG: avn:Avin_03870 RNA polymerase sigma factor, FecI family; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004513756.1 PFAM: FecR protein; KEGG: pen:PSEEN0275 FecR-like transmembrane sensor YP_004513757.1 KEGG: neu:NE0549 TonB-dependent receptor protein; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal YP_004513758.1 PFAM: Protein of unknown function DUF820; KEGG: ana:all1618 hypothetical protein YP_004513759.1 KEGG: pap:PSPA7_0227 ECF subfamily RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004513760.1 PFAM: FecR protein; KEGG: avn:Avin_03880 anti-sigma factor protein, FecR family YP_004513761.1 KEGG: cps:CPS_1489 hypothetical protein YP_004513762.1 KEGG: neu:NE0556 TonB-dependent receptor protein; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal YP_004513763.1 PFAM: PepSY-associated TM helix; KEGG: nde:NIDE0645 hypothetical protein YP_004513764.1 KEGG: nde:NIDE2175 RNA polymerase sigma factor FecI (sigma-19); TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004513765.1 PFAM: FecR protein; KEGG: avn:Avin_03880 anti-sigma factor protein, FecR family YP_004513766.1 KEGG: xau:Xaut_2777 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004513767.1 PFAM: FecR protein; KEGG: avn:Avin_03880 anti-sigma factor protein, FecR family YP_004513768.1 KEGG: noc:Noc_0321 ferrichrome iron receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal YP_004513769.1 PFAM: Peptidase M4, propeptide, PepSY; PepSY-associated TM helix; KEGG: neu:NE0550 hypothetical protein YP_004513770.1 KEGG: neu:NE0546 TonB-dependent receptor protein; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal YP_004513772.1 KEGG: cse:Cseg_0483 RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004513773.1 PFAM: FecR protein; KEGG: neu:NE0548 transmembrane sensor YP_004513774.1 KEGG: neu:NE0546 TonB-dependent receptor protein; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal YP_004513775.1 PFAM: PepSY-associated TM helix; KEGG: neu:NE0550 hypothetical protein YP_004513776.1 KEGG: xau:Xaut_2777 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004513777.1 PFAM: FecR protein; KEGG: pen:PSEEN1038 FecR-like transmembrane sensor YP_004513778.1 KEGG: neu:NE0556 TonB-dependent receptor protein; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal YP_004513779.1 KEGG: neu:NE0554 ECF subfamily RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004513780.1 PFAM: FecR protein; KEGG: dac:Daci_5891 anti-FecI sigma factor FecR YP_004513781.1 KEGG: neu:NE0546 TonB-dependent receptor protein; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal YP_004513782.1 KEGG: xau:Xaut_2777 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004513783.1 PFAM: FecR protein; KEGG: ara:Arad_7665 FecR iron sensor protein YP_004513784.1 KEGG: neu:NE0546 TonB-dependent receptor protein; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal YP_004513786.1 PFAM: Radical SAM; KEGG: mca:MCA0073 pyruvate formate lyase-activating enzyme YP_004513787.1 PFAM: UPF0103/Mediator of ErbB2-driven cell motility (Memo), related; KEGG: mca:MCA0072 hypothetical protein YP_004513788.1 KEGG: mca:MCA0071 hypothetical protein; TIGRFAM: AMMECR1; PFAM: AMMECR1 YP_004513789.1 TIGRFAM: Glucose-6-phosphate dehydrogenase; KEGG: fbl:Fbal_1965 glucose-6-phosphate 1-dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase YP_004513790.1 KEGG: cja:CJA_1351 6-phosphogluconolactonase; TIGRFAM: 6-phosphogluconolactonase YP_004513791.1 PFAM: Uncharacterised conserved protein UCP028704, OpgC; KEGG: mca:MCA1763 hypothetical protein YP_004513792.1 TIGRFAM: 6-phosphogluconate dehydratase; KEGG: pat:Patl_0972 phosphogluconate dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase YP_004513793.1 TIGRFAM: KDPG/KHG aldolase; KEGG: mca:MCA0038 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase; PFAM: KDPG/KHG aldolase YP_004513794.1 KEGG: mpt:Mpe_A0377 rod shape-determining-related protein YP_004513795.1 KEGG: pna:Pnap_1740 transposase YP_004513796.1 PFAM: Integrase, catalytic core; KEGG: ppr:PBPRB1144 transposase YP_004513797.1 KEGG: slt:Slit_0172 cytochrome b561 YP_004513798.1 TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; KEGG: wch:wcw_0356 6-phosphogluconate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, C-terminal; 6-phosphogluconate dehydrogenase, NAD-binding YP_004513799.1 KEGG: mca:MCA2012 hypothetical protein YP_004513800.1 PFAM: Stress responsive alpha-beta barrel; KEGG: mca:MCA0759 hypothetical protein YP_004513801.1 PFAM: Redoxin; KEGG: cts:Ctha_1949 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004513802.1 PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; GAF; Serine/threonine-protein kinase-like domain; KEGG: phytochrome sensor protein; SMART: ATP-binding region, ATPase-like; GAF; Serine/threonine-protein kinase domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004513803.1 KEGG: rfr:Rfer_3573 response regulator receiver domain-containing protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004513804.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold-3; PAS fold; KEGG: lch:Lcho_3018 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; PAC motif YP_004513805.1 TIGRFAM: Ribulose-phosphate 3-epimerase; KEGG: swd:Swoo_0346 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase YP_004513806.1 TIGRFAM: DNA helicase, ATP-dependent, RecQ type, N-terminal; PFAM: DNA/RNA helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA helicase, UvrD/REP type; KEGG: gca:Galf_1432 ATP-dependent DNA helicase, RecQ family; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal YP_004513807.1 KEGG: cyc:PCC7424_3277 protein of unknown function DUF1568 YP_004513808.1 SMART: Toll-Interleukin receptor; KEGG: amr:AM1_1973 leucine-rich repeat-containing protein YP_004513809.1 KEGG: lch:Lcho_4144 transposase IS3/IS911 family protein; manually curated; PFAM: Transposase IS3/IS911 YP_004513810.1 TIGRFAM: Methyltransferase FkbM; KEGG: rba:RB9235 nodulation protein NoeI- methyltransferase YP_004513811.1 PFAM: Modulator of Rho-dependent transcription termination; KEGG: neu:NE0186 hypothetical protein YP_004513812.1 SMART: Diguanylate cyclase, predicted; PAS; PAC motif; TIGRFAM: Diguanylate cyclase, predicted; PAS; KEGG: eat:EAT1b_1219 diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(s); PFAM: Diguanylate cyclase, predicted; PAS fold; MHYT YP_004513813.1 KEGG: mca:MCA1677 glutamine synthetase, type I; TIGRFAM: Glutamine synthetase type I; PFAM: Glutamine synthetase, catalytic region; Glutamine synthetase, beta-Grasp YP_004513814.1 PFAM: Protein of unknown function DUF1597; KEGG: nhl:Nhal_3279 protein of unknown function DUF1597 YP_004513815.1 PFAM: Nitrogen regulatory protein PII; KEGG: pcr:Pcryo_2346 nitrogen regulatory protein P-II (GlnB, GlnK) YP_004513816.1 KEGG: tcx:Tcr_1500 ammonium transporter; TIGRFAM: Probable ammonium transporter, marine subtype; Ammonium transporter; PFAM: Ammonium transporter YP_004513817.1 PFAM: Nitrogen regulatory protein PII; KEGG: abo:ABO_2530 nitrogen regulatory protein P-II YP_004513818.1 KEGG: ttu:TERTU_2481 ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter YP_004513819.1 PFAM: Inositol monophosphatase; KEGG: cpi:Cpin_1028 inositol monophosphatase YP_004513820.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; Haemerythrin-like, metal-binding; PFAM: Diguanylate cyclase, predicted; Transcriptional regulator, histidine kinase sensor, N-terminal; PAS fold; GAF; Haemerythrin/HHE cation-binding motif; KEGG: ant:Arnit_1186 PAS/PAC and GAF sensor-containg diguanylate cyclase; SMART: Diguanylate cyclase, predicted; GAF; PAS YP_004513821.1 PFAM: ABC transporter-like; ABC transporter, transmembrane region; KEGG: scl:sce2651 carbohydrate ABC transporter; SMART: ATPase, AAA+ type, core YP_004513822.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: hel:HELO_4408 NAD-dependent epimerase/dehydratase YP_004513823.1 KEGG: dar:Daro_1831 hypothetical protein YP_004513824.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: mca:MCA0805 copper-translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated region; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase YP_004513825.1 KEGG: mca:MCA0804 hypothetical protein YP_004513826.1 KEGG: mag:amb2913 hypothetical protein YP_004513827.1 KEGG: mca:MCA0802 hypothetical protein YP_004513828.1 KEGG: mag:amb2919 hypothetical protein YP_004513829.1 KEGG: tgr:Tgr7_0560 hypothetical protein YP_004513830.1 PFAM: Flagellar hook-length control protein; KEGG: psa:PST_2582 flagellar hook-length control protein FliK YP_004513831.1 TIGRFAM: Flagellar export FliJ; KEGG: pag:PLES_42161 flagellar biosynthesis chaperone YP_004513832.1 TIGRFAM: Flagellar protein export ATPase, FliI; ATPase, type III secretion system, FliI/YscN; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; KEGG: aeh:Mlg_0712 flagellar protein export ATPase FliI; SMART: ATPase, AAA+ type, core YP_004513833.1 PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: aeh:Mlg_0711 flagellar assembly protein FliH YP_004513834.1 KEGG: tgr:Tgr7_1968 flagellar motor switch protein G; TIGRFAM: Flagellar motor switch protein FliG; PFAM: Flagellar motor switch protein FliG YP_004513835.1 KEGG: nhl:Nhal_2345 flagellar M-ring protein FliF; TIGRFAM: Flagellar FliF M-ring protein; PFAM: Secretory protein YscJ/FliF; Flagellar M-ring C-terminal YP_004513836.1 TIGRFAM: Flagellar hook-basal body complex protein FliE; HAMAP: Flagellar hook-basal body complex protein FliE; KEGG: tgr:Tgr7_1970 flagellar hook-basal body protein FliE; PFAM: Flagellar hook-basal body complex protein FliE YP_004513837.1 KEGG: vfm:VFMJ11_1986 two-component response regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_004513838.1 KEGG: maq:Maqu_2000 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-4; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS YP_004513839.1 KEGG: tgr:Tgr7_1973 response regulator receiver protein; PFAM: RNA polymerase sigma factor 54, interaction; Flagellar regulatory FleQ; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core YP_004513840.1 PFAM: Protein of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated region; KEGG: alv:Alvin_2216 hypothetical protein YP_004513841.1 PFAM: Methyltransferase type 11; TIGRFAM: Ubiquinone biosynthesis O-methyltransferase; HAMAP: 3-demethylubiquinone-9 3-methyltransferase; KEGG: mca:MCA1272 3-demethylubiquinone-9 3-methyltransferase YP_004513842.1 TIGRFAM: 2-phosphoglycolate phosphatase, prokaryotic; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; KEGG: mep:MPQ_1677 phosphoglycolate phosphatase; PFAM: Haloacid dehalogenase-like hydrolase YP_004513843.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: maq:Maqu_2497 short-chain dehydrogenase/reductase SDR YP_004513844.1 KEGG: mca:MCA1270 hypothetical protein; TIGRFAM: FeS assembly SUF system protein SufT, PFAM: Protein of unknown function DUF59 YP_004513845.1 SMART: Diguanylate cyclase, predicted; TIGRFAM: Diguanylate cyclase, predicted; KEGG: pfo:Pfl01_4084 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted YP_004513846.1 TIGRFAM: Outer membrane lipoprotein carrier protein LolA, Proteobacteria; HAMAP: Outer membrane lipoprotein carrier protein LolA, Proteobacteria; KEGG: mca:MCA1783 outer membrane lipoprotein carrier protein LolA; PFAM: Outer membrane lipoprotein carrier protein LolA YP_004513847.1 PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; manually curated; KEGG: mca:MCA1672 penicillin-binding protein, TIGRFAM: Penicillin-binding protein 1B YP_004513848.1 PFAM: Type IV pilus assembly PilZ YP_004513849.1 KEGG: hypothetical protein YP_004513850.1 SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; TIGRFAM: Excinuclease ABC, B subunit; KEGG: mca:MCA2201 excinuclease ABC subunit B; HAMAP: Excinuclease ABC, B subunit; PFAM: DNA/RNA helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; UvrB/UvrC protein YP_004513851.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; KEGG: gca:Galf_2779 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region YP_004513852.1 KEGG: ppw:PputW619_0761 exodeoxyribonuclease V subunit beta; TIGRFAM: Exodeoxyribonuclease V, beta subunit; PFAM: DNA helicase, UvrD/REP type YP_004513853.1 TIGRFAM: Exodeoxyribonuclease V, alpha subunit; KEGG: ppf:Pput_4536 exodeoxyribonuclease V, alpha subunit; SMART: ATPase, AAA+ type, core YP_004513854.1 KEGG: rba:RB9338 formaldehyde-activating enzyme; TIGRFAM: Formaldehyde-activating enzyme; PFAM: Formaldehyde-activating enzyme YP_004513855.1 KEGG: eba:ebA2110 bacterioferritin subunit; TIGRFAM: Bacterioferritin; PFAM: Ferritin/Dps protein YP_004513857.1 KEGG: app:CAP2UW1_1817 hypothetical protein YP_004513858.1 KEGG: sus:Acid_2325 hypothetical protein YP_004513860.1 KEGG: pol:Bpro_1524 hypothetical protein YP_004513861.1 KEGG: pol:Bpro_1523 hypothetical protein YP_004513863.1 KEGG: pol:Bpro_5210 hypothetical protein YP_004513864.1 PFAM: Glycerophosphoryl diester phosphodiesterase; KEGG: lch:Lcho_3369 glycerophosphoryl diester phosphodiesterase YP_004513865.1 PFAM: Alkaline phosphatase D-related; KEGG: rme:Rmet_2583 alkaline phosphatase YP_004513866.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: pna:Pnap_2935 hypothetical protein YP_004513867.1 KEGG: net:Neut_2281 thioredoxin YP_004513868.1 KEGG: mca:MCA1444 hypothetical protein YP_004513870.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; KEGG: ppd:Ppro_1341 response regulator receiver modulated diguanylate cyclase; SMART: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region YP_004513871.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; CHASE; PAS fold; PAS fold-4; PAS fold-3; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; KEGG: ctt:CtCNB1_1514 proline sensor PrlS; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif; Signal transduction response regulator, receiver region YP_004513872.1 KEGG: mca:MCA0866 oxygen-independent coproporphyrinogen III oxidase, PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB YP_004513873.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ank:AnaeK_0239 transcriptional regulator, TetR family YP_004513874.1 PFAM: Integrase, catalytic core; KEGG: ppr:PBPRB1144 transposase YP_004513875.1 KEGG: pna:Pnap_1740 transposase YP_004513876.1 KEGG: swd:Swoo_1073 cytochrome P460 YP_004513877.1 KEGG: sde:Sde_2765 TonB-dependent siderophore receptor YP_004513878.1 PFAM: Uracil-DNA glycosylase-like; KEGG: pha:PSHAb0040 uracil-DNA glycosylase YP_004513879.1 PFAM: Protein of unknown function DUF805; KEGG: pfl:PFL_5614 hypothetical protein YP_004513880.1 KEGG: ethanolamine ammonia-lyase; PFAM: Ethanolamine ammonia-lyase light chain YP_004513881.1 KEGG: ethanolamine ammonia-lyase; PFAM: Ethanolamine ammonia lyase large subunit YP_004513882.1 PFAM: Glycosyl transferase, family 19; TIGRFAM: Glycosyl transferase, family 19; HAMAP: Lipid-A-disaccharide synthase; KEGG: mca:MCA0400 lipid-A-disaccharide synthase YP_004513883.1 KEGG: mca:MCA0399 aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase YP_004513884.1 PFAM: Oxidoreductase, N-terminal; KEGG: mca:MCA0398 Gfo/Idh/MocA family oxidoreductase YP_004513885.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: mca:MCA2072 copper-translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated region; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase YP_004513886.1 PFAM: Heavy metal transport/detoxification protein; KEGG: mca:MCA0611 mercuric ion binding protein YP_004513887.1 KEGG: nhl:Nhal_2335 EAL domain protein; PFAM: Diguanylate phosphodiesterase, predicted; Metal-dependent hydrolase HDOD; SMART: Diguanylate phosphodiesterase, predicted YP_004513888.1 KEGG: mca:MCA2612 rhodanese-like domain-containing protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_004513889.1 KEGG: mca:MCA0201 hypothetical protein; HAMAP: Uncharacterised protein family UPF0274; PFAM: Uncharacterised protein family UPF0274 YP_004513890.1 PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding; TIGRFAM: DNA glycosylase/AP lyase; HAMAP: Formamidopyrimidine-DNA glycosylase; KEGG: tcx:Tcr_1921 formamidopyrimidine-DNA glycosylase YP_004513891.1 KEGG: mgm:Mmc1_3580 response regulator receiver protein; PFAM: Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-related YP_004513892.1 KEGG: net:Neut_1871 hypothetical protein YP_004513893.1 KEGG: psp:PSPPH_5014 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02647; PFAM: Conserved hypothetical protein CHP02647 YP_004513894.1 PFAM: Phospholipase/carboxylesterase; KEGG: tbd:Tbd_2669 hypothetical protein YP_004513895.1 PFAM: Uncharacterised protein family UPF0118; KEGG: tgr:Tgr7_2250 permease YP_004513896.1 KEGG: sse:Ssed_3278 hypothetical protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004513898.1 KEGG: mca:MCA1820 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02096; PFAM: Protein of unknown function DUF1486 YP_004513899.1 TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR; KEGG: mgm:Mmc1_0537 cob(I)yrinic acid a,c-diamide adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR YP_004513900.1 PFAM: CobB/CobQ-like glutamine amidotransferase; KEGG: gwc:GWCH70_1559 cobyrinic acid a,c-diamide synthase YP_004513901.1 KEGG: ttu:TERTU_4530 hypothetical protein YP_004513903.1 PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; KEGG: mca:MCA1695 cell division protein FtsK YP_004513904.1 TIGRFAM: Thioredoxin reductase; KEGG: mca:MCA1694 thioredoxin-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004513905.1 PFAM: Leucyl/phenylalanyl-tRNA-protein transferase; TIGRFAM: Leucyl/phenylalanyl-tRNA-protein transferase; HAMAP: Leucyl/phenylalanyl-tRNA-protein transferase; KEGG: neu:NE2219 leucyl/phenylalanyl-tRNA--protein transferase YP_004513906.1 KEGG: mca:MCA1791 arginyl-tRNA-protein transferase; HAMAP: Arginine-tRNA-protein transferase, predicted, prokaryotic; PFAM: Arginine-tRNA-protein transferase, C-terminal; Arginine-tRNA-protein transferase, N-terminal YP_004513907.1 KEGG: tcx:Tcr_0790 elongation factor P/YeiP; HAMAP: Translation elongation factor P; PFAM: Elongation factor P, C-terminal; Translation elongation factor P/YeiP, central; Translation elongation factor, KOW-like YP_004513908.1 TIGRFAM: CRISPR-associated HD domain; HDIG; Helicase Cas3, CRISPR-associated, core; PFAM: DNA/RNA helicase, C-terminal; KEGG: mfa:Mfla_0601 metal dependent phosphohydrolase; SMART: DEAD-like helicase, N-terminal YP_004513910.1 KEGG: mfa:Mfla_0602 CRISPR-associated Cas5d family protein; TIGRFAM: CRISPR-associated protein, Cas5d-type; CRISPR-associated protein Cas5; PFAM: CRISPR-associated protein, Cas5d-type YP_004513911.1 KEGG: mfa:Mfla_0603 CRISPR-associated Csd1 family protein; TIGRFAM: CRISPR-associated protein, Csd1-type; PFAM: CRISPR-associated protein, Csd1-type YP_004513912.1 KEGG: mfa:Mfla_0604 CRISPR-associated Csh2 family protein; TIGRFAM: CRISPR-associated protein Csd2; CRISPR-associated protein TM1801; PFAM: CRISPR-associated protein TM1801 YP_004513914.1 KEGG: cvi:CV_1228 hypothetical protein; TIGRFAM: CRISPR-associated protein Cas4; PFAM: CRISPR-associated protein Cas4 YP_004513915.1 KEGG: cvi:CV_1229 hypothetical protein; TIGRFAM: CRISPR-associated protein Cas1, DVULG subtype; CRISPR-associated protein Cas1; PFAM: CRISPR-associated protein Cas1 YP_004513916.1 TIGRFAM: Protein of unknown function DUF196; KEGG: psa:PST_3751 CRISPR-associated Cas2 family protein YP_004513917.1 KEGG: lch:Lcho_4144 transposase IS3/IS911 family protein; manually curated; PFAM: Transposase IS3/IS911 YP_004513918.1 PFAM: Integrase, catalytic core; KEGG: ppr:PBPRB1144 transposase YP_004513919.1 KEGG: pna:Pnap_1740 transposase YP_004513922.1 KEGG: rpb:RPB_2554 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal YP_004513923.1 PFAM: FecR protein; KEGG: nde:NIDE2185 ferric citrate sensor FecR YP_004513924.1 KEGG: dar:Daro_1832 sigma-70 region 2; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004513925.1 TIGRFAM: Translation initiation factor IF-1; HAMAP: Translation initiation factor IF-1; KEGG: gpb:HDN1F_15710 translation initiation factor IF-1; PFAM: S1, IF1 type YP_004513926.1 TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA; PFAM: ATPase associated with various cellular activities, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; KEGG: mca:MCA1789 ATP-dependent Clp protease, ATP-binding subunit ClpA; SMART: ATPase, AAA+ type, core YP_004513927.1 KEGG: hha:Hhal_1401 ATP-dependent Clp protease adaptor protein ClpS; HAMAP: ATP-dependent Clp protease adapter protein clpS; PFAM: Adaptor protein ClpS, core YP_004513928.1 PFAM: NUDIX hydrolase domain; KEGG: app:CAP2UW1_2937 NUDIX hydrolase YP_004513929.1 TIGRFAM: tRNA-specific 2-thiouridylase; HAMAP: tRNA-specific 2-thiouridylase; KEGG: mca:MCA1785 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PFAM: tRNA methyl transferase-like YP_004513930.1 TIGRFAM: Adenylosuccinate lyase; KEGG: tgr:Tgr7_1849 adenylosuccinate lyase; PFAM: Adenylosuccinate lyase C-terminal; Fumarate lyase YP_004513931.1 PFAM: Nucleoside recognition; KEGG: tbd:Tbd_1045 hypothetical protein YP_004513932.1 TIGRFAM: MiaB-like tRNA modifying enzyme; Methylthiotransferase; PFAM: Methylthiotransferase, N-terminal; Radical SAM; KEGG: kko:Kkor_0838 MiaB-like tRNA modifying enzyme; SMART: Elongator protein 3/MiaB/NifB YP_004513933.1 PFAM: VacJ-like lipoprotein; KEGG: mca:MCA2076 VacJ lipoprotein YP_004513934.1 PFAM: VacJ-like lipoprotein; KEGG: mca:MCA2076 VacJ lipoprotein YP_004513935.1 SMART: Exonuclease; TIGRFAM: Ribonuclease T; KEGG: mca:MCA2077 ribonuclease T; HAMAP: Ribonuclease T; PFAM: Exonuclease, RNase T/DNA polymerase III YP_004513936.1 KEGG: hch:HCH_01764 glutaredoxin-like protein; TIGRFAM: Glutaredoxin-related protein; PFAM: Glutaredoxin YP_004513937.1 TIGRFAM: DNA polymerase III, delta subunit; KEGG: tgr:Tgr7_2277 DNA-directed DNA polymerase; PFAM: DNA polymerase III, delta YP_004513938.1 PFAM: Rare lipoprotein B; KEGG: slt:Slit_2848 rare lipoprotein B YP_004513939.1 TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; KEGG: tcx:Tcr_0479 leucyl-tRNA synthetase YP_004513940.1 PFAM: Protein of unknown function DUF1451; KEGG: aeh:Mlg_0399 hypothetical protein YP_004513941.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: mca:MCA1454 ParA family protein YP_004513942.1 KEGG: amc:MADE_02672 cytochrome b561 YP_004513943.1 TIGRFAM: Apolipoprotein N-acyltransferase; HAMAP: Apolipoprotein N-acyltransferase; KEGG: mca:MCA1455 apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004513944.1 KEGG: abo:ABO_2444 hypothetical protein YP_004513945.1 PFAM: Protein of unknown function DUF1311; KEGG: dma:DMR_02520 hypothetical protein YP_004513946.1 PFAM: Cation/H+ exchanger; KEGG: cyn:Cyan7425_0565 sodium/hydrogen exchanger YP_004513947.1 KEGG: meh:M301_0039 transglutaminase domain protein; PFAM: Transglutaminase-like; Bacterial transglutaminase-like, N-terminal; SMART: Transglutaminase-like YP_004513948.1 KEGG: meh:M301_0038 transglutaminase domain protein; PFAM: Transglutaminase-like; SMART: Transglutaminase-like YP_004513949.1 TIGRFAM: Phosphoenolpyruvate synthase; KEGG: tin:Tint_0437 phosphoenolpyruvate synthase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile region; PEP-utilising enzyme YP_004513950.1 KEGG: amc:MADE_03229 predicted aspartyl protease YP_004513953.1 KEGG: lbf:LBF_2804 hypothetical protein YP_004513954.1 PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: mep:MPQ_2515 pyridoxamine 5'-phosphate oxidase-related fmn-binding protein YP_004513955.1 PFAM: Type IV pilus assembly PilZ YP_004513956.1 PFAM: Aldo/keto reductase; KEGG: mca:MCA0485 aldo/keto reductase oxidoreductase YP_004513957.1 TIGRFAM: Nitrogenase MoFe cofactor biosynthesis protein NifE; KEGG: avn:Avin_01450 nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: Nitrogenase/oxidoreductase, component 1 YP_004513958.1 TIGRFAM: Nitrogenase molybdenum-iron cofactor biosynthesis protein; KEGG: slt:Slit_0904 nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; PFAM: Nitrogenase/oxidoreductase, component 1 YP_004513959.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: avn:Avin_01480 nitrogenase MoFe cofactor biosynthesis protein NifX YP_004513960.1 KEGG: psa:PST_1336 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0460; PFAM: Uncharacterised protein family UPF0460 YP_004513961.1 PFAM: Uncharacterised protein family UPF0437; KEGG: alv:Alvin_0907 hypothetical protein YP_004513962.1 KEGG: mgm:Mmc1_1191 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; TIGRFAM: Ferredoxin III 4[4Fe-4S], nif-specific; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup YP_004513963.1 KEGG: azo:azo3368 ferredoxin 2Fe-2S protein YP_004513964.1 KEGG: azl:AZL_006580 hypothetical protein YP_004513965.1 KEGG: dar:Daro_1511 hypothetical protein YP_004513966.1 PFAM: Protein of unknown function DUF364; KEGG: mca:MCA2834 hypothetical protein YP_004513967.1 KEGG: dar:Daro_1512 hypothetical protein YP_004513968.1 PFAM: Cysteine-rich region, CCG; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: net:Neut_0446 hypothetical protein YP_004513970.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold; PAS fold-4; Signal transduction response regulator, C-terminal; KEGG: azo:azo1544 GGDEF/EAL/PAC/PAS-domain-containing protein; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS YP_004513971.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; MASE1; PAS fold-3; PAS fold; KEGG: slt:Slit_0879 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; PAC motif YP_004513972.1 PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: apa:APP7_0420 sigma-E factor regulatory protein YP_004513973.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: dar:Daro_1421 Rieske (2Fe-2S) region YP_004513974.1 KEGG: azo:azo2281 flavodoxin FldA; TIGRFAM: Flavodoxin, long chain; PFAM: Flavodoxin/nitric oxide synthase YP_004513975.1 KEGG: mca:MCA0259 glutaredoxin-related protein; TIGRFAM: Glutaredoxin-related protein; PFAM: Glutaredoxin; BolA-like protein YP_004513976.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Clp protease, ATP-binding subunit ClpX; KEGG: mca:MCA1829 ATP-dependent protease ATP-binding subunit ClpX; HAMAP: Clp protease, ATP-binding subunit ClpX; PFAM: ATPase associated with various cellular activities, AAA-2; Zinc finger, C4-type; Clp ATPase, C-terminal YP_004513977.1 KEGG: azo:azo0546 peptidylprolyl isomerase; TIGRFAM: Nitrogen fixation protein NifM; PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type YP_004513978.1 PFAM: NifZ; KEGG: azo:azo0547 nitrogen fixation protein YP_004513979.1 KEGG: ttu:TERTU_1593 nitrogen fixation protein NifW; HAMAP: Nitrogenase-stabilizing/protective protein nifW; PFAM: Nitrogen fixation protein NifW YP_004513982.1 KEGG: slt:Slit_0809 hypothetical protein YP_004513983.1 KEGG: mca:MCA1830 serine acetyltransferase; TIGRFAM: Serine O-acetyltransferase YP_004513985.1 TIGRFAM: Homocitrate synthase NifV-type; KEGG: alv:Alvin_1499 homocitrate synthase; PFAM: Pyruvate carboxyltransferase YP_004513986.1 PFAM: Protein of unknown function DUF2191; KEGG: gpb:HDN1F_25630 hypothetical protein YP_004513987.1 KEGG: mar:MAE_17540 PilT protein-like protein YP_004513988.1 PFAM: Dihydropteroate synthase, DHPS; KEGG: mca:MCA1245 pterin-binding domain-containing protein YP_004513989.1 KEGG: 5,10-methylenetetrahydrofolate reductase-like protein YP_004513990.1 HAMAP: Formate-tetrahydrofolate ligase, FTHFS; KEGG: mca:MCA2219 formate--tetrahydrofolate ligase; PFAM: Formate-tetrahydrofolate ligase, FTHFS YP_004513991.1 PFAM: Methionine synthase, vitamin-B12 independent; Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal; TIGRFAM: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; HAMAP: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; KEGG: mms:mma_0750 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase YP_004513992.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: tgr:Tgr7_0617 transcriptional regulator, LysR family YP_004513993.1 KEGG: neu:NE1162 hypothetical protein YP_004513994.1 KEGG: mep:MPQ_1143 ribonucleoside-diphosphate reductase, alpha subunit; TIGRFAM: Ribonucleoside-diphosphate reductase, alpha subunit; PFAM: Ribonucleotide reductase large subunit, C-terminal; Ribonucleotide reductase large subunit, N-terminal; ATP-cone YP_004513995.1 KEGG: lip:LI0477 ribonucleotide reductase, beta subunit; PFAM: Ribonucleotide reductase YP_004513996.1 manually curated; KEGG: lbf:LBF_2417 hypothetical protein YP_004513997.1 KEGG: ppd:Ppro_0505 hypothetical protein YP_004513998.1 KEGG: mms:mma_2474 autotransporter; TIGRFAM: Extracellular HAF; PFAM: Autotransporter beta-domain YP_004513999.1 KEGG: sde:Sde_3059 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/II; SMART: HTH transcriptional regulator, GntR YP_004514000.1 PFAM: Monooxygenase, FAD-binding; KEGG: amr:AM1_2225 hypothetical protein YP_004514001.1 KEGG: mpt:Mpe_A3473 hypothetical protein YP_004514002.1 PFAM: Glycosyl transferase, group 1; KEGG: pna:Pnap_2100 glycosyl transferase, group 1 YP_004514003.1 PFAM: AIR synthase related protein; AIR synthase related protein, C-terminal; KEGG: pna:Pnap_2101 AIR synthase related protein YP_004514004.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sno:Snov_3715 GCN5-related N-acetyltransferase YP_004514005.1 KEGG: mea:Mex_2p1116 oxidoreductase; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB YP_004514006.1 KEGG: bvi:Bcep1808_6052 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004514007.1 KEGG: azc:AZC_0073 hypothetical protein YP_004514010.1 TIGRFAM: Cysteine desulfurase, NifS, bacterial/archaeal; KEGG: slt:Slit_0806 cysteine desulfurase NifS; PFAM: Aminotransferase, class V/Cysteine desulfurase YP_004514011.1 KEGG: slt:Slit_0805 Fe-S cluster assembly protein NifU; TIGRFAM: NIF system FeS cluster assembly, NifU; PFAM: NIF system FeS cluster assembly, NifU, N-terminal; BFD-like [2Fe-2S]-binding region; NIF system FeS cluster assembly, NifU, C-terminal YP_004514012.1 KEGG: psa:PST_1349 Fe-S cluster assembly protein; TIGRFAM: FeS cluster insertion; PFAM: FeS cluster biogenesis YP_004514013.1 KEGG: azo:azo3367 NifZ protein YP_004514014.1 PFAM: Nitroreductase-like; KEGG: nhl:Nhal_2027 hypothetical protein YP_004514015.1 PFAM: Protein of unknown function DUF330; KEGG: ppd:Ppro_0404 hypothetical protein YP_004514016.1 PFAM: Mammalian cell entry related; KEGG: sat:SYN_02068 paraquat-inducible protein B YP_004514017.1 PFAM: ABC transporter-like; KEGG: sfu:Sfum_2415 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004514018.1 KEGG: sfu:Sfum_2414 hypothetical protein; TIGRFAM: Protein of unknown function DUF140; PFAM: Protein of unknown function DUF140 YP_004514019.1 KEGG: swi:Swit_2819 hypothetical protein; HAMAP: Uncharacterised conserved protein UCP006173; PFAM: Uncharacterised protein family UPF0153 YP_004514020.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: mca:MCA0135 protein insertion permease FtsX YP_004514021.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Cell division ATP-binding protein FtsE; KEGG: mca:MCA0134 cell division ATP-binding protein FtsE; PFAM: ABC transporter-like YP_004514022.1 TIGRFAM: Cell division transporter substrate-binding protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Cytochrome oxidase assembly; Signal recognition particle, SRP54 subunit, helical bundle; KEGG: mca:MCA0133 cytochrome oxidase assembly family protein/cell division protein FtsY; SMART: ATPase, AAA+ type, core YP_004514023.1 KEGG: mca:MCA0132 hypothetical protein YP_004514024.1 KEGG: mca:MCA0131 hypothetical protein YP_004514025.1 KEGG: lpa:lpa_00641 hypothetical protein YP_004514026.1 KEGG: mca:MCA0883 cytochrome c oxidase, subunit III; PFAM: Cytochrome c oxidase, subunit III YP_004514027.1 PFAM: Cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: mca:MCA0882 cytochrome c oxidase assembly protein YP_004514028.1 KEGG: mca:MCA0880 cytochrome c oxidase, subunit I; TIGRFAM: Cytochrome c oxidase, subunit I bacterial type; PFAM: Cytochrome c oxidase, subunit I YP_004514029.1 KEGG: mca:MCA0879 cytochrome c oxidase, subunit II; TIGRFAM: Cytochrome c oxidase, subunit II; PFAM: Cytochrome c oxidase subunit II C-terminal; Cytochrome C oxidase subunit II, transmembrane region; Cytochrome c, class I YP_004514030.1 KEGG: mca:MCA0715 hemerythrin family protein; TIGRFAM: Haemerythrin-like, metal-binding; PFAM: Haemerythrin/HHE cation-binding motif YP_004514031.1 KEGG: xcv:XCV3736 dithiobiotin synthetase; TIGRFAM: Dethiobiotin synthase; HAMAP: Dethiobiotin synthase YP_004514032.1 KEGG: mca:MCA1128 biotin synthesis protein BioC; TIGRFAM: Biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11 YP_004514033.1 TIGRFAM: BioH; KEGG: mca:MCA1127 BioH protein; PFAM: Alpha/beta hydrolase fold-1 YP_004514034.1 PFAM: Aminotransferase, class I/II; TIGRFAM: 8-amino-7-oxononanoate synthase; HAMAP: 8-amino-7-oxononanoate synthase; KEGG: tgr:Tgr7_0133 8-amino-7-oxononanoate synthase YP_004514035.1 KEGG: mca:MCA1125 biotin synthetase; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM; TIGRFAM: Biotin synthase; HAMAP: Biotin synthase; SMART: Elongator protein 3/MiaB/NifB YP_004514036.1 KEGG: mca:MCA1124 competence protein F; manually curated; PFAM: Phosphoribosyltransferase YP_004514037.1 PFAM: Fertility inhibition FinO-like; KEGG: bch:Bcen2424_6185 ProQ activator of osmoprotectant transporter ProP YP_004514039.1 KEGG: eba:p2B15 plasmid-specific DNA primase YP_004514040.1 PFAM: Sodium:dicarboxylate symporter; KEGG: rso:RSc0330 C4-dicarboxylate transporter DctA YP_004514041.1 PFAM: Protein of unknown function DUF1614; KEGG: nhl:Nhal_3859 protein of unknown function DUF1614 YP_004514042.1 KEGG: svo:SVI_2530 cold shock domain family protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004514044.1 PFAM: Protein of unknown function DUF45; KEGG: ppr:PBPRB0636 metal-dependent hydrolase YP_004514045.1 PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; KEGG: cyj:Cyan7822_4382 alcohol dehydrogenase GroES domain-containing protein YP_004514046.1 KEGG: lbf:LBF_2938 cAMP-binding protein; PFAM: Cyclic nucleotide-binding; GCN5-related N-acetyltransferase; SMART: Cyclic nucleotide-binding YP_004514047.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: dde:Dde_0827 ABC transporter permease YP_004514048.1 PFAM: UBA/THIF-type NAD/FAD binding fold; KEGG: nmu:Nmul_A0374 UBA/ThiF-type NAD/FAD binding fold YP_004514049.1 TIGRFAM: PEP-CTERM/exosortase system-associated acyltransferase; KEGG: aeh:Mlg_0150 hypothetical protein YP_004514050.1 PFAM: ABC transporter-like; KEGG: lwe:lwe2530 ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004514051.1 KEGG: dma:DMR_08170 secretion protein HlyD family protein YP_004514052.1 KEGG: nhl:Nhal_3271 sugar transferase, PEP-Cterm system associated; TIGRFAM: Sugar transferase, PEP-CTERM system associated; Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase YP_004514053.1 PFAM: Peptidase S1/S6, chymotrypsin/Hap; KEGG: nmu:Nmul_A2676 peptidase S1 and S6, chymotrypsin/Hap YP_004514055.1 TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; KEGG: mca:MCA2526 tryptophanyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib YP_004514056.1 KEGG: hch:HCH_02127 hypothetical protein YP_004514057.1 PFAM: 6-pyruvoyl tetrahydropterin synthase-related; KEGG: mca:MCA2527 6-pyruvoyl tetrahydropterin synthase YP_004514058.1 PFAM: Protein of unknown function DUF1249; KEGG: mca:MCA2528 hypothetical protein YP_004514059.1 TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type, N-terminal; PFAM: RQC domain; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; KEGG: mca:MCA1868 ATP-dependent DNA helicase RecQ; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain YP_004514060.1 TIGRFAM: Glutamate--cysteine ligase, monofunctional; HAMAP: Glutamate--cysteine ligase; KEGG: nhl:Nhal_3173 glutamate/cysteine ligase; PFAM: Glutamate--cysteine ligase YP_004514061.1 TIGRFAM: Adenylylsulphate reductase, thioredoxin dependent; Phosphoadenosine phosphosulphate reductase CysH-type; KEGG: maq:Maqu_1582 phosphoadenosine phosphosulfate reductase; PFAM: Phosphoadenosine phosphosulphate reductase YP_004514062.1 KEGG: xau:Xaut_2681 transcriptional regulator YP_004514063.1 PFAM: Globin, truncated bacterial-like; KEGG: mca:MCA2507 hypothetical protein YP_004514064.1 KEGG: mca:MCA2508 oxygenase, PFAM: Oxidoreductase FAD-binding region; Ferredoxin; Oxidoreductase FAD/NAD(P)-binding YP_004514065.1 KEGG: mmb:Mmol_0023 CBS domain containing membrane protein; PFAM: HPP; Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core YP_004514067.1 KEGG: dps:DP2046 hypothetical protein YP_004514068.1 KEGG: dps:DP2045 hypothetical protein YP_004514069.1 PFAM: CopG-like DNA-binding; KEGG: cat:CA2559_06880 hypothetical protein YP_004514071.1 PFAM: Sulphate transporter; KEGG: mca:MCA1443 sulfate transporter family protein YP_004514072.1 SMART: Toprim domain, subgroup; TIGRFAM: RecR protein; KEGG: aeh:Mlg_1508 recombination protein RecR; HAMAP: Recombination protein recR; PFAM: Toprim domain; Zinc finger C4-type, RecR YP_004514073.1 TIGRFAM: Uncharacterised protein family UPF0133; HAMAP: Uncharacterised protein family UPF0133; KEGG: mms:mma_2329 hypothetical protein; PFAM: Uncharacterised protein family UPF0133 YP_004514074.1 SMART: ATPase, AAA+ type, core; manually curated; KEGG: mca:MCA1328 DNA polymerase III, gamma and tau subunits, programmed frameshift; TIGRFAM: DNA polymerase III, subunit gamma/ tau; PFAM: ATPase, AAA-type, core YP_004514075.1 KEGG: slt:Slit_1753 peptidase S49; TIGRFAM: Peptidase S49, SppA; PFAM: Peptidase S49 YP_004514076.1 KEGG: rso:RSc1042 phosphoglycolate phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_004514077.1 TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: 23S rRNA pseudouridylate synthase; SMART: RNA-binding S4 YP_004514078.1 KEGG: mca:MCA1481 ribonuclease E; TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA binding domain YP_004514079.1 PFAM: Cation/H+ exchanger; KEGG: ppf:Pput_4254 sodium/hydrogen exchanger YP_004514080.1 TIGRFAM: Peptide chain release factor 3; Small GTP-binding protein; HAMAP: Peptide chain release factor 3; KEGG: mca:MCA1990 peptide chain release factor 3; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2 YP_004514081.1 manually curated; KEGG: pph:Ppha_2017 hypothetical protein YP_004514082.1 KEGG: swd:Swoo_4266 hypothetical protein YP_004514083.1 KEGG: azo:azo0014 flavodoxin FldA; TIGRFAM: Flavodoxin, long chain; PFAM: Flavodoxin/nitric oxide synthase YP_004514084.1 PFAM: GCN5-related N-acetyltransferase; KEGG: gcn5-related N-acetyltransferase YP_004514085.1 KEGG: dol:Dole_1113 transcriptional regulator, TrmB; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004514086.1 KEGG: nhl:Nhal_2226 hypothetical protein YP_004514087.1 TIGRFAM: Amidase, hydantoinase/carbamoylase; KEGG: tgr:Tgr7_0180 allantoate amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_004514088.1 PFAM: Isochorismatase-like; KEGG: tkm:TK90_0028 isochorismatase hydrolase YP_004514089.1 PFAM: Sodium/solute symporter; KEGG: nwa:Nwat_2329 Na+/solute symporter YP_004514091.1 KEGG: nhl:Nhal_2221 aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain protein; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region YP_004514092.1 TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; KEGG: tgr:Tgr7_0185 asparagine synthase (glutamine-hydrolyzing); PFAM: Asparagine synthase; Glutamine amidotransferase, class-II YP_004514093.1 KEGG: tgr:Tgr7_2730 YbaK/EbsC protein; TIGRFAM: Conserved hypothetical protein CHP00011; PFAM: YbaK/aminoacyl-tRNA synthetase associated region YP_004514094.1 PFAM: Peptidase C13, legumain; KEGG: app:CAP2UW1_3877 peptidase C13, legumain asparaginyl peptidase YP_004514095.1 PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533; KEGG: smt:Smal_3243 transposase IS116/IS110/IS902 family protein YP_004514098.1 KEGG: pwa:Pecwa_1396 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004514099.1 KEGG: hse:Hsero_2903 retron reverse transcriptase YP_004514101.1 KEGG: swi:Swit_5220 hypothetical protein YP_004514102.1 KEGG: mca:MCA1821 hypothetical protein YP_004514103.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: mmw:Mmwyl1_3133 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004514104.1 KEGG: nhl:Nhal_0869 hypothetical protein YP_004514105.1 KEGG: cpc:Cpar_0567 beta-lactamase; PFAM: Penicillin-binding protein, transpeptidase YP_004514106.1 PFAM: MTH538 TIR-like domain; KEGG: gme:Gmet_1196 PASTA YP_004514111.1 KEGG: nhl:Nhal_3060 sigma-54 factor interaction domain-containing protein; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core YP_004514112.1 PFAM: Protein of unknown function DUF938; KEGG: nhl:Nhal_3059 protein of unknown function DUF938 YP_004514113.1 PFAM: Carbonic anhydrase; KEGG: mca:MCA0910 carbonic anhydrase YP_004514114.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: nhl:Nhal_3057 short-chain dehydrogenase/reductase SDR YP_004514115.1 PFAM: Protein of unknown function DUF1326; KEGG: nhl:Nhal_3068 protein of unknown function DUF1326 YP_004514116.1 PFAM: Protein of unknown function DUF2182, transmembrane, metal-binding; KEGG: nhl:Nhal_3056 hypothetical protein YP_004514117.1 KEGG: hypothetical protein YP_004514118.1 KEGG: kko:Kkor_1034 hypothetical protein YP_004514119.1 KEGG: dak:DaAHT2_0795 radical SAM enzyme, Cfr family; TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN; PFAM: Radical SAM YP_004514120.1 KEGG: slo:Shew_3508 hypothetical protein YP_004514121.1 KEGG: geo:Geob_0349 protoporphyrinogen oxidase YP_004514122.1 KEGG: mca:MCA1524 hypothetical protein YP_004514123.1 PFAM: Peptidase S54, rhomboid; KEGG: dde:Dde_1446 rhomboid family protein YP_004514124.1 TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpA type; PFAM: Helicase-associated region; DNA/RNA helicase, C-terminal; Domain of unknown function DUF1605; KEGG: mca:MCA1482 ATP-dependent helicase HrpA; SMART: DEAD-like helicase, N-terminal; ATPase, AAA+ type, core; DNA/RNA helicase, C-terminal YP_004514125.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold-4; PAS fold; KEGG: rfr:Rfer_1983 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; PAC motif YP_004514126.1 KEGG: eba:ebA6324 substrate-binding protein involved in ABC-type nitrate/sulfonate/bicarbonate transport system YP_004514127.1 TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: exodeoxyribonuclease III xth; PFAM: Endonuclease/exonuclease/phosphatase YP_004514128.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: hoh:Hoch_2991 transcriptional regulator, LysR family YP_004514129.1 HAMAP: Phosphoenolpyruvate carboxylase; KEGG: nhl:Nhal_2213 phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase YP_004514130.1 KEGG: psl:Psta_2756 ABC transporter related protein; PFAM: ABC transporter-like YP_004514131.1 PFAM: Secretion protein HlyD; KEGG: lbf:LBF_0197 efflux pump YP_004514132.1 KEGG: lbf:LBF_0196 TolC-like outermembrane protein YP_004514134.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: dar:Daro_0230 GGDEF; SMART: Diguanylate cyclase, predicted YP_004514136.1 KEGG: nmu:Nmul_A2728 phosphatase-like; TIGRFAM: PEP-CTERM anchor; PFAM: Protein of unknown function DUF839, bacterial YP_004514138.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; GCN5-related N-acetyltransferase; KEGG: tgr:Tgr7_0656 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004514139.1 PFAM: Methyltransferase type 11; KEGG: bgf:BC1003_1242 methyltransferase type 11 YP_004514140.1 KEGG: azo:azo3855 alkaline phosphatase; PFAM: Alkaline phosphatase; SMART: Alkaline phosphatase YP_004514141.1 KEGG: avn:Avin_33810 hypothetical protein YP_004514142.1 KEGG: rmr:Rmar_0079 hypothetical protein YP_004514143.1 KEGG: pyo:PY04960 hypothetical protein YP_004514144.1 KEGG: nmu:Nmul_A1980 hypothetical protein YP_004514145.1 KEGG: tbd:Tbd_2354 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004514146.1 KEGG: tbd:Tbd_2353 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain YP_004514147.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sml:Smlt3196 acetyltransferase YP_004514148.1 KEGG: tmz:Tmz1t_0130 glutaredoxin YP_004514149.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Peptidase M41, FtsH; KEGG: mca:MCA0851 cell division protein FtsH; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular YP_004514150.1 PFAM: Flavin reductase-like, FMN-binding; KEGG: cwo:Cwoe_0945 flavin reductase domain protein FMN-binding protein YP_004514151.1 PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Lysyl-tRNA synthetase, class II; HAMAP: Lysyl-tRNA synthetase; KEGG: ilo:IL0822 lysyl-tRNA synthetase YP_004514152.1 KEGG: ava:Ava_2494 hypothetical protein YP_004514153.1 PFAM: Protein of unknown function DUF433; KEGG: ava:Ava_2493 hypothetical protein YP_004514154.1 TIGRFAM: Peptide chain release factor 2; HAMAP: Peptide chain release factor 2, bacterial; KEGG: mca:MCA0302 peptide chain release factor 2, programmed frameshift; PFAM: Class I peptide chain release factor; Peptide chain release factor YP_004514155.1 TIGRFAM: Prolipoprotein diacylglyceryl transferase; HAMAP: Prolipoprotein diacylglyceryl transferase; KEGG: sua:Saut_1548 prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase YP_004514156.1 KEGG: nhl:Nhal_1454 outer membrane lipoprotein Slp; TIGRFAM: Outer membrane lipoprotein Slp; PFAM: Outer membrane lipoprotein Slp YP_004514157.1 PFAM: Protein of unknown function DUF262; KEGG: rlt:Rleg2_2200 protein of unknown function DUF262 YP_004514158.1 KEGG: bbe:BBR47_09910 hypothetical protein YP_004514159.1 KEGG: mca:MCA0675 preprotein translocase, SecG subunit; TIGRFAM: Preprotein translocase SecG subunit; PFAM: Preprotein translocase SecG subunit YP_004514160.1 TIGRFAM: Triosephosphate isomerase; KEGG: mca:MCA0674 triosephosphate isomerase; PFAM: Triosephosphate isomerase YP_004514161.1 TIGRFAM: Phosphoglucosamine mutase; KEGG: mca:MCA1847 phosphoglucosamine mutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal YP_004514162.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Peptidase M41, FtsH; KEGG: mca:MCA1848 cell division protein FtsH; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular YP_004514163.1 KEGG: ribosomal RNA methyltransferase RrmJ/FtsJ; HAMAP: Ribosomal RNA large subunit methyltransferase E; PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ YP_004514164.1 PFAM: RNA-binding, CRM domain; KEGG: tgr:Tgr7_0979 hypothetical protein YP_004514165.1 TIGRFAM: Prokaryotic transcription elongation factor GreA; HAMAP: Transcription elongation factor greA; KEGG: tgr:Tgr7_0978 transcription elongation factor GreA; PFAM: Transcription elongation factor, GreA/GreB region, prokaryotic YP_004514166.1 TIGRFAM: Carbamoyl phosphate synthase, large subunit, glutamine-dependent; KEGG: mca:MCA1852 carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Carbamoyl phosphate synthetase, large subunit, oligomerisation; MGS-like YP_004514167.1 TIGRFAM: Carbamoyl phosphate synthase, small subunit; KEGG: tau:Tola_1026 carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl phosphate synthase, small subunit, N-terminal; Glutamine amidotransferase class-I, C-terminal YP_004514168.1 PFAM: Dihydrodipicolinate reductase; TIGRFAM: Dihydrodipicolinate reductase, bacterial/plant; HAMAP: Dihydrodipicolinate reductase; KEGG: tgr:Tgr7_0974 dihydrodipicolinate reductase YP_004514169.1 SMART: Heat shock protein DnaJ, N-terminal; TIGRFAM: Chaperone DnaJ; KEGG: mca:MCA1855 DnaJ protein; HAMAP: Chaperone protein dnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; Heat shock protein DnaJ, cysteine-rich region YP_004514170.1 TIGRFAM: Chaperone DnaK; HAMAP: Chaperone DnaK; KEGG: mca:MCA1856 DnaK protein; PFAM: Heat shock protein 70 YP_004514171.1 KEGG: mca:MCA1857 GrpE protein; HAMAP: GrpE nucleotide exchange factor; PFAM: GrpE nucleotide exchange factor YP_004514172.1 TIGRFAM: Negative regulator of class I heat shock protein; HAMAP: Negative regulator of class I heat shock protein; KEGG: mca:MCA1858 heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein YP_004514173.1 KEGG: nhl:Nhal_3127 aminotransferase class V; PFAM: Aminotransferase, class V/Cysteine desulfurase YP_004514174.1 KEGG: ttu:TERTU_2563 transcriptional regulatory protein RtcR; PFAM: Regulator of RNA terminal phosphate cyclase; RNA polymerase sigma factor 54, interaction; SMART: ATPase, AAA+ type, core YP_004514175.1 PFAM: Uncharacterised protein family UPF0027; KEGG: ttu:TERTU_2561 RtcB protein YP_004514176.1 TIGRFAM: RNA 3'-terminal phosphate cyclase, subgroup; KEGG: pmy:Pmen_1191 RNA 3'-terminal-phosphate cyclase; PFAM: RNA 3'-terminal phosphate cyclase-like YP_004514177.1 KEGG: app:CAP2UW1_3147 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02450, tryptophan-rich; PFAM: Conserved hypothetical protein CHP02450, tryptophan-rich YP_004514178.1 KEGG: mca:MCA1107 cyd operon protein YbgT; TIGRFAM: Cyd operon protein YbgT; PFAM: Membrane bound YbgT-like YP_004514179.1 KEGG: mca:MCA1106 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: Cytochrome bd ubiquinol oxidase, subunit II; PFAM: Cytochrome bd ubiquinol oxidase, subunit II YP_004514180.1 KEGG: nmu:Nmul_A1680 cytochrome c family protein YP_004514181.1 PFAM: Cytochrome bd ubiquinol oxidase, subunit I; KEGG: mca:MCA1105 cytochrome d ubiquinol oxidase, subunit I YP_004514183.1 PFAM: Heavy metal transport/detoxification protein; KEGG: mca:MCA0800 hypothetical protein YP_004514184.1 PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2; KEGG: mca:MCA2011 multicopper oxidase YP_004514185.1 KEGG: psa:PST_1042 hypothetical protein; manually curated; PFAM: Phosphate-starvation-inducible E YP_004514186.1 PFAM: Protein of unknown function DUF81; KEGG: ach:Achl_0204 protein of unknown function DUF81 YP_004514187.1 KEGG: mca:MCA1103 metallo-beta-lactamase YP_004514188.1 PFAM: O-antigen ligase-related; KEGG: srm:PSR_61010 pilin glycosylation enzyme YP_004514189.1 KEGG: noc:Noc_2540 general secretion pathway protein H YP_004514190.1 KEGG: smd:Smed_3508 arsenate reductase and related; TIGRFAM: Conserved hypothetical protein, ArsC related; PFAM: Arsenate reductase-like YP_004514191.1 TIGRFAM: Succinyl-diaminopimelate desuccinylase, proteobacteria; HAMAP: Succinyl-diaminopimelate desuccinylase, proteobacteria; KEGG: mca:MCA1553 succinyl-diaminopimelate desuccinylase; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_004514192.1 KEGG: nwa:Nwat_0334 DNA repair protein RadC; TIGRFAM: DNA repair, RadC-like; PFAM: DNA repair, RadC-like YP_004514193.1 PFAM: DNA/pantothenate metabolism flavoprotein, C-terminal; Flavoprotein; manually curated; KEGG: tgr:Tgr7_0102 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_004514194.1 PFAM: DeoxyUTP pyrophosphatase domain; TIGRFAM: DeoxyUTP pyrophosphatase domain, subfamily 1,; HAMAP: Deoxyuridine 5'-triphosphate nucleotidohydrolase; KEGG: spe:Spro_4844 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_004514195.1 PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; KEGG: nhl:Nhal_3802 phosphomannomutase YP_004514196.1 TIGRFAM: Acetylglutamate kinase; KEGG: mca:MCA2781 acetylglutamate kinase; PFAM: Aspartate/glutamate/uridylate kinase YP_004514197.1 KEGG: mca:MCA2739 hypothetical protein YP_004514198.1 PFAM: Protein of unknown function YGGT; KEGG: mca:MCA1534 YGGT family protein YP_004514199.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; manually curated; KEGG: mca:MCA1535 pyrroline-5-carboxylate reductase; TIGRFAM: Delta 1-pyrroline-5-carboxylate reductase YP_004514200.1 KEGG: noc:Noc_3038 virulence factor MviN-like; TIGRFAM: Flagellin assembly, membrane protein MviN; PFAM: Flagellin assembly, membrane protein MviN YP_004514201.1 TIGRFAM: Ribosomal protein S20; HAMAP: Ribosomal protein S20; KEGG: mca:MCA2250 30S ribosomal protein S20; PFAM: Ribosomal protein S20 YP_004514202.1 PFAM: YkuD domain; Peptidoglycan-binding lysin domain; Sporulation/cell division region, bacteria; KEGG: mca:MCA0412 LysM domain-containing protein YP_004514203.1 PFAM: ATPase-like, ParA/MinD; Protein of unknown function DUF59; KEGG: mmb:Mmol_1525 protein of unknown function DUF59 YP_004514204.1 PFAM: HipA-like, N-terminal; HipA-like, C-terminal; KEGG: gca:Galf_1839 HipA domain-containing protein YP_004514205.1 SMART: Pseudouridine synthase/archaeosine transglycosylase; TIGRFAM: Glutamate 5-kinase, ProB-related; KEGG: mca:MCA2249 gamma-glutamyl kinase; HAMAP: Glutamate 5-kinase; PFAM: Aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase YP_004514206.1 TIGRFAM: GTP-binding protein Obg/CgtA; Small GTP-binding protein; HAMAP: GTPase obg; KEGG: mca:MCA2248 GTPase ObgE; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related YP_004514207.1 TIGRFAM: Ribosomal protein L27; HAMAP: Ribosomal protein L27; KEGG: pct:PC1_0559 50S ribosomal protein L27; PFAM: Ribosomal protein L27 YP_004514208.1 TIGRFAM: Ribosomal protein L21; HAMAP: Ribosomal protein L21; KEGG: alv:Alvin_2158 50S ribosomal protein L21; PFAM: Ribosomal protein L21 YP_004514210.1 TIGRFAM: Thiamine biosynthesis protein ThiC; HAMAP: Thiamine biosynthesis protein ThiC; KEGG: mca:MCA2710 thiamine biosynthesis protein ThiC; PFAM: Thiamine biosynthesis protein ThiC YP_004514211.1 KEGG: mca:MCA1489 hypothetical protein YP_004514212.1 PFAM: Aminoacyl-tRNA synthetase, class I (M); tRNA-binding region; TIGRFAM: Methionyl-tRNA synthetase, class Ia; Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal; HAMAP: Methionyl-tRNA synthetase; KEGG: alv:Alvin_1201 methionyl-tRNA synthetase YP_004514213.1 KEGG: mmb:Mmol_1955 electron transport complex, RnfABCDGE type, B subunit; TIGRFAM: Electron transport complex, RnfB; PFAM: Fe-S cluster; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup YP_004514214.1 PFAM: Peptidase M48, Ste24p; KEGG: dvu:DVU3388 lipoprotein YP_004514215.1 KEGG: ppd:Ppro_2233 17 kDa surface antigen YP_004514216.1 SMART: von Willebrand factor, type A; KEGG: von Willebrand factor type A YP_004514217.1 KEGG: protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, subgroup, catalytic domain YP_004514218.1 PFAM: ABC transporter-like; Forkhead-associated; ABC-2 type transporter; KEGG: cag:Cagg_0751 FHA modulated ABC efflux pump with fused ATPase and integral membrane subunits; SMART: ATPase, AAA+ type, core; Forkhead-associated YP_004514222.1 KEGG: dar:Daro_3742 hypothetical protein YP_004514223.1 PFAM: Domain of unknown function DUF1993; KEGG: cyt:cce_4499 hypothetical protein YP_004514224.1 KEGG: ppr:PBPRA0857 hypothetical protein YP_004514225.1 KEGG: hypothetical protein YP_004514226.1 TIGRFAM: Prevent-host-death protein; KEGG: prevent-host-death family protein YP_004514227.1 TIGRFAM: Protein of unknown function DUF132; KEGG: hypothetical protein YP_004514228.1 KEGG: eta:ETA_14500 hypothetical protein YP_004514229.1 KEGG: mca:MCA2164 DNA polymerase III, alpha subunit, PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: DNA polymerase III, alpha subunit; HAMAP: Error-prone DNA polymerase; SMART: Polymerase/histidinol phosphatase, N-terminal YP_004514230.1 KEGG: mca:MCA2165 hypothetical protein YP_004514231.1 KEGG: aeh:Mlg_1095 hypothetical protein YP_004514232.1 TIGRFAM: Peptidase S24, LexA repressor; HAMAP: LexA repressor; KEGG: mca:MCA2167 LexA repressor; PFAM: LexA DNA-binding region; Peptidase S24/S26A/S26B, conserved region YP_004514233.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: nhl:Nhal_1611 extracellular solute-binding protein family 1 YP_004514234.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: nhl:Nhal_1610 binding-protein-dependent transport systems inner membrane component YP_004514235.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: noc:Noc_0280 ABC transporter, inner membrane subunit YP_004514236.1 PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: nhl:Nhal_1608 ABC transporter related protein; SMART: ATPase, AAA+ type, core YP_004514238.1 PFAM: Transglutaminase-like; KEGG: vha:VIBHAR_02460 hypothetical protein YP_004514239.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: mca:MCA1522 4'-phosphopantetheinyltransferase YP_004514240.1 KEGG: mca:MCA2652 hypothetical protein; TIGRFAM: addiction module antidote protein, CC2985; PFAM: addiction module antidote protein, CC2985 YP_004514241.1 PFAM: Plasmid stabilisation system; KEGG: mca:MCA2653 hypothetical protein YP_004514244.1 KEGG: pwa:Pecwa_4331 TonB family protein; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein YP_004514245.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: bav:BAV2119 biopolymer transport protein YP_004514246.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mpt:Mpe_A3720 biopolymer transport protein ExbD/TolR YP_004514247.1 PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A; Thrombospondin, type 3-like repeat; KEGG: bao:BAMF_2243 D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) YP_004514248.1 PFAM: PEP-CTERM bacterial YP_004514249.1 KEGG: pat:Patl_0760 hypothetical protein YP_004514252.1 KEGG: swd:Swoo_2724 integral membrane sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004514254.1 KEGG: pmy:Pmen_1766 two component LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region YP_004514255.1 PFAM: TonB-dependent receptor, plug; KEGG: net:Neut_0374 TonB-dependent siderophore receptor YP_004514256.1 KEGG: gca:Galf_1307 multi-sensor hybrid histidine kinase; PFAM: Transcriptional regulator, histidine kinase sensor, N-terminal; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region YP_004514257.1 TIGRFAM: PAS; PFAM: Signal transduction response regulator, receiver region; PAS fold-3; Transcription regulator LuxR, C-terminal; KEGG: cyj:Cyan7822_6043 multi-sensor signal transduction histidine kinase; SMART: Signal transduction response regulator, receiver region; PAS; PAC motif; Transcription regulator LuxR, C-terminal YP_004514258.1 KEGG: saz:Sama_3598 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004514259.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: rpc:RPC_2834 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004514260.1 KEGG: bgf:BC1003_0036 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004514261.1 PFAM: PepSY-associated TM helix; KEGG: nmu:Nmul_A2392 PepSY-associated TM helix YP_004514262.1 HAMAP: PKHD-type hydroxylase ybiX; PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: sku:Sulku_0850 2og-fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit YP_004514263.1 PFAM: IucA/IucC; KEGG: dze:Dd1591_2674 IucA/IucC family protein YP_004514264.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pol:Bpro_4784 major facilitator transporter YP_004514265.1 PFAM: IucA/IucC; KEGG: tbd:Tbd_0718 iron transporter YP_004514266.1 KEGG: tbd:Tbd_0717 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2 YP_004514267.1 KEGG: mep:MPQ_2521 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004514268.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: neu:NE2137 methylamine utilization protein MauG precursor YP_004514269.1 KEGG: cja:CJA_2554 ATPase, AAA family domain protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core YP_004514270.1 PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region; TIGRFAM: Acetyl-CoA carboxylase, alpha subunit; HAMAP: Acetyl-CoA carboxylase, alpha subunit; KEGG: mca:MCA1804 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit YP_004514271.1 KEGG: aav:Aave_0248 hypothetical protein YP_004514272.1 KEGG: aav:Aave_0249 hypothetical protein YP_004514273.1 TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; Lysidine-tRNA(Ile) synthetase, C-terminal; HAMAP: tRNA(Ile)-lysidine synthase; KEGG: nhl:Nhal_2676 tRNA(Ile)-lysidine synthetase; PFAM: PP-loop; Lysidine-tRNA(Ile) synthetase, substrate-binding domain YP_004514275.1 KEGG: dbr:Deba_2969 hypothetical protein YP_004514276.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; PAS fold; KEGG: mep:MPQ_1551 diguanylate cyclase with pas/pac sensor; SMART: Diguanylate cyclase, predicted; PAS YP_004514277.1 PFAM: CTP synthase, N-terminal; Glutamine amidotransferase class-I, C-terminal; TIGRFAM: CTP synthase; HAMAP: CTP synthase; KEGG: mca:MCA2513 CTP synthetase YP_004514278.1 PFAM: DAHP synthetase I/KDSA; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; HAMAP: 3-deoxy-8-phosphooctulonate synthase; KEGG: tgr:Tgr7_1183 2-dehydro-3-deoxyphosphooctonate aldolase YP_004514279.1 PFAM: Enolase, C-terminal; Enolase, N-terminal; TIGRFAM: Enolase; HAMAP: Enolase; KEGG: mca:MCA2515 enolase YP_004514280.1 KEGG: ppw:PputW619_4062 septum formation initiator; manually curated; PFAM: Septum formation initiator YP_004514282.1 TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; HAMAP: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; KEGG: mca:MCA2517 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_004514283.1 TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; HAMAP: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; KEGG: psa:PST_1566 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core YP_004514284.1 TIGRFAM: Pseudouridine synthase, TruD; HAMAP: tRNA pseudouridine synthase D; KEGG: tgr:Tgr7_1411 tRNA pseudouridine synthase D TruD; PFAM: Pseudouridine synthase, TruD YP_004514285.1 KEGG: etr:ETAE_1603 hypothetical protein YP_004514286.1 KEGG: hch:HCH_05823 anaerobic dehydrogenase; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region; BFD-like [2Fe-2S]-binding region YP_004514287.1 KEGG: mca:MCA0592 nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004514288.1 PFAM: Cyanate lyase, C-terminal; TIGRFAM: Cyanase; HAMAP: Cyanate hydratase; KEGG: mar:MAE_10370 cyanate hydratase YP_004514289.1 KEGG: rmr:Rmar_1225 hypothetical protein YP_004514290.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Nitrate transport ATP-binding subunit C/D; KEGG: sde:Sde_2266 regulatory proteins, AsnC/Lrp; PFAM: ABC transporter-like YP_004514291.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ttu:TERTU_1088 nitrate transporter, permease YP_004514292.1 KEGG: hch:HCH_06708 nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein YP_004514293.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; KEGG: cvi:CV_1190 sensor/response regulator hybrid; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; Signal transduction response regulator, receiver region YP_004514294.1 KEGG: cvi:CV_1189 two-component system; PFAM: Signal transduction response regulator, receiver region; Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Signal transduction response regulator, receiver region; Metal-dependent phosphohydrolase, HD region YP_004514295.1 KEGG: lch:Lcho_4144 transposase IS3/IS911 family protein; manually curated; PFAM: Transposase IS3/IS911 YP_004514296.1 KEGG: tbd:Tbd_1967 hypothetical protein YP_004514298.1 KEGG: tbd:Tbd_1967 hypothetical protein YP_004514299.1 PFAM: RNA-directed DNA polymerase (reverse transcriptase); KEGG: swo:Swol_2463 RNA-directed DNA polymerase (reverse transcriptase) YP_004514301.1 KEGG: see:SNSL254_p_0173 rhs family protein; TIGRFAM: RHS repeat-associated core domain; YD repeat; PFAM: RHS protein; YD repeat YP_004514302.1 PFAM: ANTAR; Signal transduction response regulator, receiver region; KEGG: hel:HELO_3232 K07183 response regulator NasT YP_004514303.1 PFAM: Major facilitator superfamily MFS-1; KEGG: cps:CPS_4950 nitrate permease YP_004514304.1 TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirB; KEGG: ttu:TERTU_2948 nitrite reductase [NAD(P)H], large subunit; PFAM: Nitrite/sulphite reductase 4Fe-4S region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding region; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like YP_004514305.1 KEGG: mfa:Mfla_0318 nitrite reductase (NAD(P)H) large subunit, NirD; TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirD YP_004514306.1 KEGG: cyc:PCC7424_0708 phenazine biosynthesis protein PhzF family; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein YP_004514307.1 KEGG: cak:Caul_3146 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A YP_004514308.1 KEGG: pna:Pnap_4859 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein YP_004514309.1 TIGRFAM: Type VI secretion system-associated, BMAA0400; PFAM: Type VI secretion system-associated, BMAA0400; Protein phosphatase 2C, N-terminal; KEGG: cja:CJA_1952 serine/threonine protein phosphatase; SMART: Protein phosphatase 2C-related YP_004514310.1 KEGG: azo:azo3890 ImcF-like protein; TIGRFAM: Type VI secretion system, IcmF; PFAM: ImcF-related; Protein of unknown function DUF1215 YP_004514311.1 KEGG: pap:PSPA7_0149 hypothetical protein; TIGRFAM: Type IV / VI secretion system, DotU; Type VI secretion system, OmpA/MotB; PFAM: Type IV / VI secretion system, DotU; Outer membrane protein, OmpA/MotB, C-terminal YP_004514312.1 KEGG: azl:AZL_017770 hypothetical protein; TIGRFAM: Protein of unknown function DUF876, bacterial; PFAM: Protein of unknown function DUF876, bacterial YP_004514313.1 TIGRFAM: Type VI secretion system, FHA domain-containing; PFAM: Forkhead-associated; KEGG: pap:PSPA7_0152 hypothetical protein; SMART: Forkhead-associated YP_004514314.1 KEGG: nhl:Nhal_1728 peptidase C14 caspase catalytic subunit P20; PFAM: Peptidase C14, caspase catalytic; Sel1-like; SMART: Sel1-like YP_004514315.1 KEGG: nhl:Nhal_0827 hypothetical protein YP_004514316.1 TIGRFAM: Type VI secretion system, lipoprotein VCA0113; KEGG: vap:Vapar_0552 type VI secretion lipoprotein, VC_A0113 family YP_004514317.1 KEGG: bph:Bphy_3843 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, subgroup, catalytic domain YP_004514318.1 KEGG: nhl:Nhal_0830 outer membrane autotransporter barrel domain protein; TIGRFAM: Outer membrane autotransporter barrel; PFAM: Autotransporter beta-domain YP_004514319.1 KEGG: bba:Bd1395 nucleic acid binding protein YP_004514320.1 SMART: DNA topoisomerase, type IIA, subunit B or N-terminal; ATP-binding region, ATPase-like; TIGRFAM: DNA topoisomerase IV, subunit B, Gram-negative; KEGG: pmy:Pmen_0604 DNA topoisomerase IV subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, region 2; ATP-binding region, ATPase-like; DNA topoisomerase, type IIA, subunit B, C-terminal YP_004514321.1 KEGG: pcu:pc0990 hypothetical protein; TIGRFAM: Addiction module toxin, RelE/StbE; PFAM: Plasmid stabilisation system YP_004514322.1 KEGG: nwa:Nwat_2561 hypothetical protein YP_004514323.1 KEGG: pap:PSPA7_3980 hypothetical protein YP_004514324.1 KEGG: pap:PSPA7_3979 hypothetical protein YP_004514325.1 PFAM: NERD; DNA topoisomerase, type IA, zn finger; KEGG: sat:SYN_02043 hypothetical protein YP_004514326.1 KEGG: abo:ABO_2713 hypothetical protein YP_004514327.1 manually curated; KEGG: pmy:Pmen_2122 hypothetical protein YP_004514329.1 manually curated; TIGRFAM: Addiction module toxin, RelE/StbE; KEGG: alv:Alvin_1697 RelE/StbE family addiction module toxin; PFAM: Plasmid stabilisation system YP_004514331.1 KEGG: bhy:BHWA1_02010 RelE, cytotoxic translational repressor of toxin-antitoxin stability system; TIGRFAM: Addiction module toxin, RelE/StbE; PFAM: Plasmid stabilisation system YP_004514332.1 TIGRFAM: Exonuclease VII, small subunit; HAMAP: Exonuclease VII, small subunit; KEGG: mca:MCA0819 exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit YP_004514333.1 KEGG: mca:MCA0818 geranyltranstransferase; PFAM: Polyprenyl synthetase YP_004514334.1 PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; TIGRFAM: Deoxyxylulose-5-phosphate synthase; HAMAP: Deoxyxylulose-5-phosphate synthase; KEGG: mca:MCA0817 1-deoxy-D-xylulose-5-phosphate synthase YP_004514335.1 TIGRFAM: Adenine phosphoribosyl transferase; HAMAP: Adenine phosphoribosyl transferase; KEGG: nhl:Nhal_2625 adenine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase YP_004514336.1 KEGG: nhl:Nhal_0340 VacJ family lipoprotein; manually curated; PFAM: VacJ-like lipoprotein YP_004514337.1 KEGG: mca:MCA0806 hypothetical protein; TIGRFAM: Hopanoid biosynthesis-associated membrane protein HpnM; PFAM: Toluene tolerance YP_004514338.1 KEGG: nmu:Nmul_A2560 radical SAM family protein; TIGRFAM: Hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: Radical SAM YP_004514339.1 PFAM: Squalene/phytoene synthase; KEGG: mca:MCA0813 squalene synthase YP_004514340.1 TIGRFAM: Hopene cyclase; Squalene cyclase; KEGG: mca:MCA0812 squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase YP_004514341.1 KEGG: noc:Noc_1319 purine phosphorylase 1; TIGRFAM: Hopanoid-associated phosphorylase HpnG; PFAM: Nucleoside phosphorylase YP_004514342.1 KEGG: mca:MCA0809 acetylornithine aminotransferase, PFAM: Aminotransferase class-III YP_004514343.1 KEGG: mca:MCA0808 hypothetical protein YP_004514344.1 PFAM: Copper resistance D; KEGG: mca:MCA0807 copper resistance protein YP_004514345.1 PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; TIGRFAM: Deoxyxylulose-5-phosphate synthase; HAMAP: Deoxyxylulose-5-phosphate synthase; KEGG: mca:MCA0817 1-deoxy-D-xylulose-5-phosphate synthase YP_004514346.1 PFAM: Acyltransferase 3; KEGG: pbr:PB2503_06782 acyltransferase 3 family protein YP_004514347.1 KEGG: ppm:PPSC2_c0818 lipolytic protein g-D-S-l family YP_004514348.1 KEGG: mca:MCA0343 metallo-beta-lactamase; TIGRFAM: Hydroxyacylglutathione hydrolase; HAMAP: Hydroxyacylglutathione hydrolase YP_004514349.1 HAMAP: rRNA (guanine-N2-)-methyltransferase, RsmD; KEGG: sma:SAV_1444 ribosomal RNA small subunit methyltransferase; PFAM: Methyltransferase small YP_004514350.1 KEGG: mca:MCA1993 TatD family deoxyribonuclease; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: Deoxyribonuclease, TatD-related YP_004514351.1 PFAM: Type IV pilus assembly PilZ; KEGG: pag:PLES_21031 type 4 fimbrial biogenesis protein PilZ YP_004514352.1 KEGG: mca:MCA1995 DNA polymerase III, delta prime subunit YP_004514353.1 PFAM: Thymidylate kinase-like; TIGRFAM: Thymidylate kinase; HAMAP: Thymidylate kinase; KEGG: tgr:Tgr7_1829 dTMP kinase YP_004514354.1 KEGG: psa:PST_2618 hypothetical protein; TIGRFAM: Uncharacterised protein family YceG-like; PFAM: Uncharacterised protein family YceG-like YP_004514355.1 TIGRFAM: Aminodeoxychorismate lyase, class IV; KEGG: noc:Noc_1662 aminotransferase, class IV; PFAM: Aminotransferase, class IV YP_004514356.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; KEGG: mca:MCA1999 3-oxoacyl-(acyl-carrier-protein) synthase II; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal YP_004514357.1 TIGRFAM: Acyl carrier protein (ACP); HAMAP: Acyl carrier protein (ACP); KEGG: cja:CJA_1677 acyl carrier protein; PFAM: Phosphopantetheine-binding YP_004514358.1 KEGG: aeh:Mlg_0758 hypothetical protein YP_004514359.1 PFAM: Glycerophosphoryl diester phosphodiesterase; KEGG: nhl:Nhal_2108 glycerophosphoryl diester phosphodiesterase YP_004514360.1 PFAM: Uracil-DNA glycosylase-like; KEGG: mca:MCA3092 uracil-DNA glycosylase YP_004514361.1 PFAM: Acriflavin resistance protein; KEGG: mca:MCA2152 AcrB/AcrD/AcrF family protein YP_004514362.1 KEGG: mca:MCA2153 HlyD family secretion protein; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004514363.1 PFAM: Outer membrane efflux protein; KEGG: mca:MCA2154 outer membrane protein CyaE YP_004514364.1 KEGG: mca:MCA1398 hypothetical protein YP_004514365.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: pap:PSPA7_2104 glutathione S-transferase YP_004514366.1 PFAM: SNARE associated Golgi protein; KEGG: cni:Calni_0116 SNARE associated golgi protein-related protein YP_004514367.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: app:CAP2UW1_1887 endonuclease/exonuclease/phosphatase YP_004514368.1 KEGG: pin:Ping_1776 hypothetical protein YP_004514369.1 PFAM: Protein of unknown function DUF839, bacterial; KEGG: cyc:PCC7424_5068 protein of unknown function DUF839 YP_004514370.1 TIGRFAM: Formylmethionine deformylase; HAMAP: Formylmethionine deformylase; KEGG: maq:Maqu_0043 peptide deformylase; PFAM: Formylmethionine deformylase YP_004514371.1 PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal; TIGRFAM: Methionyl-tRNA formyltransferase; HAMAP: Methionyl-tRNA formyltransferase; KEGG: mca:MCA2844 methionyl-tRNA formyltransferase YP_004514372.1 KEGG: mca:MCA2845 sun protein; TIGRFAM: Fmu, rRNA SAM-dependent methyltransferase; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; NusB/RsmB/TIM44 YP_004514373.1 KEGG: alv:Alvin_2076 hypothetical protein YP_004514374.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: mca:MCA2847 nitrogen regulation protein NtrY, SMART: ATP-binding region, ATPase-like; HAMP linker domain; PAS; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004514375.1 KEGG: mca:MCA2848 nitrogen regulation protein NtrX, PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_004514376.1 KEGG: mca:MCA0904 50S ribosomal protein L13; TIGRFAM: Ribosomal protein L13, bacterial-type; PFAM: Ribosomal protein L13 YP_004514377.1 PFAM: Ribosomal protein S9; KEGG: swp:swp_0702 30S ribosomal protein S9 YP_004514378.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: mca:MCA0461 CBS/GGDEF/EAL domain-containing protein; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted YP_004514379.1 KEGG: hypothetical protein YP_004514381.1 KEGG: cja:CJA_2749 hypothetical protein YP_004514382.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: kfl:Kfla_6004 endonuclease/exonuclease/phosphatase YP_004514384.1 TIGRFAM: Amino acid adenylation; KEGG: mxa:MXAN_4414 non-ribosomal peptide synthase; PFAM: AMP-dependent synthetase/ligase; Phosphopantetheine-binding; Condensation domain YP_004514385.1 PFAM: Protein of unknown function DUF2070, membrane; KEGG: antibiotic biosynthesis protein YP_004514386.1 TIGRFAM: Amino acid adenylation; KEGG: mar:MAE_60010 McnC protein; PFAM: AMP-dependent synthetase/ligase; Condensation domain; Phosphopantetheine-binding YP_004514387.1 TIGRFAM: Amino acid adenylation; KEGG: psb:Psyr_1959 amino acid adenylation; PFAM: AMP-dependent synthetase/ligase; Condensation domain; Phosphopantetheine-binding YP_004514388.1 TIGRFAM: Amino acid adenylation; Thioester reductase; KEGG: bbt:BBta_6813 arthrofactin synthetase/syringopeptin synthetase C-related non-ribosomal peptide synthetase; PFAM: AMP-dependent synthetase/ligase; Condensation domain; Phosphopantetheine-binding; Male sterility, NAD-binding YP_004514389.1 PFAM: Integrase, catalytic core; KEGG: ppr:PBPRB1144 transposase YP_004514390.1 PFAM: Transposase IS3/IS911; KEGG: pna:Pnap_1740 transposase YP_004514391.1 KEGG: neu:NE0546 TonB-dependent receptor protein; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal YP_004514392.1 KEGG: cyp:PCC8801_2393 hypothetical protein YP_004514393.1 PFAM: Integrase, catalytic core; KEGG: ppr:PBPRB1144 transposase YP_004514394.1 KEGG: pna:Pnap_1740 transposase YP_004514395.1 PFAM: Integrase, catalytic core; KEGG: hna:Hneap_1227 integrase catalytic region YP_004514396.1 KEGG: gca:Galf_2409 IstB domain-containing protein ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004514397.1 PFAM: Transposase, IS4-like; KEGG: noc:Noc_0672 transposase IS4 YP_004514398.1 PFAM: MbtH-like protein; KEGG: cyt:cce_3047 MbtH-like protein YP_004514399.1 KEGG: pfl:PFL_5380 ECF subfamily RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004514400.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Cyclic peptide transporter; KEGG: scl:sce8260 ABC transporter ATP-binding protein; PFAM: ABC transporter-like YP_004514401.1 PFAM: Peptidase S45, penicillin amidase; KEGG: nde:NIDE2155 penicillin amidase YP_004514402.1 PFAM: FecR protein; KEGG: pfs:PFLU5799 iron acquisition-like protein YP_004514403.1 PFAM: FecR protein; KEGG: neu:NE2139 transmembrane sensor YP_004514404.1 KEGG: net:Neut_2090 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004514405.1 KEGG: rba:RB6610 hypothetical protein YP_004514406.1 TIGRFAM: Haemerythrin-like, metal-binding; KEGG: tte:TTE0259 hemerythrin YP_004514407.1 KEGG: hya:HY04AAS1_0193 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004514408.1 SMART: Phospholipase D/Transphosphatidylase; KEGG: app:CAP2UW1_1888 phospholipase D/transphosphatidylase YP_004514409.1 PFAM: Endonuclease/exonuclease/phosphatase; phosphatase regulatory subunit; KEGG: app:CAP2UW1_1887 endonuclease/exonuclease/phosphatase YP_004514410.1 PFAM: Domain of unknown function DUF1957; Glycoside hydrolase, family 57, core; KEGG: nhl:Nhal_0096 domain of unknown function DUF1957 YP_004514412.1 SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; TIGRFAM: Glycogen debranching enzyme GlgX; KEGG: sfu:Sfum_2956 glycogen debranching enzyme GlgX; PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic region YP_004514413.1 KEGG: mno:Mnod_2293 hypothetical protein YP_004514414.1 KEGG: mms:mma_1786 hypothetical protein YP_004514415.1 PFAM: Uncharacterised protein family UPF0153; KEGG: dar:Daro_1132 hypothetical protein YP_004514417.1 PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; Oxidoreductase FAD-binding region; Oxidoreductase FAD/NAD(P)-binding; KEGG: cps:CPS_3939 pyridoxamine 5'-phosphate oxidase / oxidoreductase, NAD-dependent YP_004514418.1 KEGG: cps:CPS_3940 alkylhydroperoxidase; TIGRFAM: Alkylhydroperoxidase AhpD core; Uncharacterised peroxidase-related; PFAM: Carboxymuconolactone decarboxylase YP_004514419.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: cvi:CV_1773 GstR-like transcriptional regulator protein YP_004514420.1 manually curated; KEGG: mpt:Mpe_A0412 hypothetical protein YP_004514421.1 PFAM: RNA-directed DNA polymerase (reverse transcriptase); Group II intron, maturase-specific; KEGG: aca:ACP_3214 group II intron-encoded maturase YP_004514422.1 KEGG: avn:Avin_39840 hypothetical protein YP_004514423.1 KEGG: tau:Tola_0064 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004514424.1 KEGG: pag:PLES_51651 serine/threonine protein kinase; PFAM: RIO-like kinase; SMART: RIO kinase YP_004514425.1 KEGG: maq:Maqu_2154 hypothetical protein; HAMAP: Protein of unknown function DUF28; PFAM: Protein of unknown function DUF28 YP_004514426.1 KEGG: mca:MCA1460 hypothetical protein YP_004514427.1 PFAM: Protein of unknown function DUF547; KEGG: hch:HCH_01043 hypothetical protein YP_004514428.1 PFAM: Polyketide cyclase/dehydrase; KEGG: nmu:Nmul_A1581 hypothetical protein YP_004514429.1 KEGG: nhl:Nhal_2945 hypothetical protein YP_004514430.1 KEGG: app:CAP2UW1_2826 SNARE associated Golgi protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SNARE associated Golgi protein; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004514431.1 PFAM: Glycosyl transferase, family 2; KEGG: app:CAP2UW1_2822 glycosyl transferase 2 YP_004514432.1 PFAM: Fatty acid hydroxylase; KEGG: hel:HELO_3308 sterol desaturase YP_004514433.1 PFAM: Protein of unknown function DUF2064; KEGG: nhl:Nhal_0868 hypothetical protein YP_004514434.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: gca:Galf_1932 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004514435.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: sal:Sala_2693 4-oxalocrotonate tautomerase YP_004514436.1 KEGG: gca:Galf_1931 carboxymuconolactone decarboxylase; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase YP_004514437.1 KEGG: xce:Xcel_1435 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004514438.1 KEGG: mca:MCA0345 cytochrome c peroxidase; PFAM: Di-haem cytochrome c peroxidase YP_004514439.1 KEGG: nde:NIDE3219 metal-binding protein SmbP YP_004514440.1 KEGG: nhl:Nhal_3135 sigma-54 factor interaction domain-containing protein; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_004514441.1 KEGG: nhl:Nhal_3134 ATP-binding region ATPase domain protein; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004514443.1 PFAM: Cupin 2, conserved barrel; KEGG: mca:MCA0909 hypothetical protein YP_004514444.1 KEGG: mca:MCA1925 hypothetical protein YP_004514446.1 PFAM: SNARE associated Golgi protein; KEGG: cyc:PCC7424_2229 SNARE associated Golgi protein YP_004514447.1 KEGG: ant:Arnit_0636 hypothetical protein YP_004514448.1 KEGG: scl:sce4731 hypothetical protein YP_004514449.1 TIGRFAM: ATPase, P-type, plasma-membrane proton-efflux; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: hna:Hneap_0971 plasma-membrane proton-efflux P-type ATPase; PFAM: ATPase, P-type, ATPase-associated region; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase YP_004514450.1 KEGG: mea:Mex_2p0918 hypothetical protein YP_004514451.1 KEGG: noc:Noc_2187 hypothetical protein YP_004514452.1 PFAM: Chloride channel, voltage gated; KEGG: mca:MCA2509 chloride channel protein YP_004514453.1 PFAM: Toluene tolerance; KEGG: mca:MCA2792 hypothetical protein YP_004514455.1 PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: xau:Xaut_4170 sulphate transporter YP_004514456.1 KEGG: aeh:Mlg_1763 hypothetical protein YP_004514457.1 PFAM: ABC transporter-like; KEGG: xca:xccb100_3846 ABC-type transporter of unknown specificity,ATPase subunit; SMART: ATPase, AAA+ type, core YP_004514458.1 PFAM: ABC-2 type transporter; KEGG: hoh:Hoch_3138 ABC-2 type transporter YP_004514459.1 PFAM: PilT protein, N-terminal; KEGG: glo:Glov_2132 PilT protein domain protein YP_004514460.1 KEGG: ara:Arad_2862 hypothetical protein; TIGRFAM: Transcription regulator AbrB; PFAM: Transcription regulator AbrB/SpoV, predicted YP_004514461.1 KEGG: dar:Daro_3431 hypothetical protein YP_004514462.1 PFAM: Acyltransferase 3; KEGG: xfa:XF0778 O-antigen acetylase YP_004514463.1 PFAM: RNA-directed DNA polymerase (reverse transcriptase); Group II intron, maturase-specific; KEGG: aca:ACP_3214 group II intron-encoded maturase YP_004514464.1 KEGG: gbm:Gbem_3671 glucose/galactose transporter; TIGRFAM: Bacterial glucose/galactose transporter; PFAM: Major facilitator superfamily MFS-1 YP_004514465.1 manually curated; KEGG: fjo:Fjoh_1564 glycoside hydrolase 3 protein; PFAM: Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal YP_004514466.1 KEGG: npu:Npun_F5648 LamG domain-containing protein YP_004514469.1 KEGG: pph:Ppha_2791 hypothetical protein YP_004514470.1 KEGG: bpd:BURPS668_3906 hypothetical protein; PFAM: Protein of unknown function DUF955; SMART: Helix-turn-helix type 3 YP_004514471.1 KEGG: bpt:Bpet3736 transposase YP_004514473.1 KEGG: slo:Shew_0485 cold-shock DNA-binding domain-containing protein; PFAM: Excalibur calcium-binding domain; Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004514474.1 KEGG: xac:XAC0053 methyltransferase YP_004514475.1 KEGG: ppd:Ppro_0062 hypothetical protein YP_004514476.1 KEGG: gca:Galf_1292 undecaprenyl-phosphate glucose phosphotransferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase, WcaJ; Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase YP_004514477.1 KEGG: xac:XAC0046 UDP-N-acetyl-D-mannosamine transferase; TIGRFAM: Glycosyl transferase WecB/TagA/CpsF; PFAM: Glycosyl transferase WecB/TagA/CpsF YP_004514478.1 PFAM: Glycosyl transferase, group 1; KEGG: xac:XAC0047 galactosyltransferase YP_004514479.1 KEGG: xac:XAC0048 hypothetical protein YP_004514481.1 KEGG: rru:Rru_A0822 hypothetical protein YP_004514482.1 KEGG: xac:XAC0062 hypothetical protein YP_004514483.1 PFAM: Sulfotransferase; KEGG: gca:Galf_0827 sulfotransferase YP_004514484.1 PFAM: Phage Tail Collar; KEGG: gur:Gura_1349 phage tail collar domain-containing protein YP_004514485.1 PFAM: Phage Tail Collar; KEGG: xop:PXO_03558 microcystin dependent protein YP_004514486.1 PFAM: Phage Tail Collar; KEGG: xac:XAC0065 microcystin dependent protein YP_004514488.1 PFAM: Asparagine synthase; KEGG: rru:Rru_A0855 asparagine synthase YP_004514489.1 KEGG: mag:amb1464 hypothetical protein; manually curated; PFAM: Methyltransferase type 12 YP_004514490.1 KEGG: hch:HCH_06057 acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase YP_004514492.1 KEGG: ank:AnaeK_4104 hypothetical protein YP_004514493.1 TIGRFAM: RHS repeat-associated core domain; YD repeat; KEGG: gme:Gmet_1475 YD repeat-containing protein YP_004514494.1 TIGRFAM: RHS repeat-associated core domain; KEGG: gme:Gmet_1475 YD repeat-containing protein YP_004514496.1 KEGG: gme:Gmet_1475 YD repeat-containing protein; TIGRFAM: RHS repeat-associated core domain; YD repeat; PFAM: YD repeat YP_004514498.1 KEGG: gme:Gmet_1475 YD repeat-containing protein; TIGRFAM: RHS repeat-associated core domain; YD repeat; PFAM: Transglutaminase-like; YD repeat YP_004514499.1 PFAM: YD repeat; KEGG: cps:CPS_2152 thrombospondin type 3 repeat-/CalX-beta domain-containing protein YP_004514500.1 PFAM: Exosortase EpsH-related YP_004514502.1 PFAM: ABC transporter-like; KEGG: gca:Galf_0823 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004514503.1 PFAM: Polysaccharide biosynthesis protein; KEGG: psp:PSPPH_0823 hypothetical protein YP_004514504.1 KEGG: xac:XAC0055 hypothetical protein YP_004514505.1 PFAM: Glycosyl transferase, group 1; KEGG: xac:XAC0041 mannosyltransferase B YP_004514506.1 PFAM: Glycosyl transferase, group 1; KEGG: pau:PA14_71910 glycosyltransferase WbpZ YP_004514507.1 TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: xac:XAC0044 lipopolysaccharide biosynthesis protein; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_004514508.1 PFAM: O-antigen ligase-related; KEGG: xac:XAC0045 hypothetical protein YP_004514509.1 KEGG: xac:XAC0054 degenerated UDP-glucose epimerase; PFAM: NAD-dependent epimerase/dehydratase YP_004514510.1 PFAM: Methyltransferase type 11; KEGG: gsu:GSU3022 hypothetical protein YP_004514511.1 KEGG: xac:XAC0052 hypothetical protein YP_004514512.1 TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; KEGG: xac:XAC0051 asparagine synthase; PFAM: Asparagine synthase; Glutamine amidotransferase, class-II YP_004514513.1 PFAM: Methyltransferase type 11; KEGG: xac:XAC0050 hypothetical protein YP_004514514.1 KEGG: xac:XAC0049 hypothetical protein YP_004514516.1 KEGG: rpa:RPA0819 hypothetical protein YP_004514517.1 KEGG: bwe:BcerKBAB4_3384 hypothetical protein YP_004514518.1 PFAM: Sulfotransferase; KEGG: gca:Galf_0827 sulfotransferase YP_004514519.1 KEGG: gca:Galf_0826 HPr serine kinase domain-containing protein YP_004514520.1 PFAM: Sulfotransferase; KEGG: rru:Rru_A1463 sulfotransferase YP_004514521.1 KEGG: pmf:P9303_27021 hypothetical protein YP_004514522.1 KEGG: rru:Rru_A3022 hypothetical protein YP_004514523.1 PFAM: Cupin 4; KEGG: rru:Rru_A0823 cupin region YP_004514524.1 KEGG: rru:Rru_A1478 HPr(Ser) kinase/phosphatase YP_004514525.1 SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: rru:Rru_A3024 prolyl 4-hydroxylase, alpha subunit YP_004514526.1 PFAM: Asparagine synthase; KEGG: xac:XAC0059 asparagine synthetase like protein YP_004514528.1 KEGG: swd:Swoo_1994 hypothetical protein YP_004514529.1 PFAM: Ribulose-phosphate 3-epimerase; KEGG: cdl:CDR20291_2461 ribulose-phosphate 3-epimerase YP_004514530.1 KEGG: hba:Hbal_3213 hypothetical protein YP_004514531.1 PFAM: Glycosyl transferase, family 2; KEGG: psl:Psta_4574 glycosyl transferase 2 YP_004514532.1 KEGG: dal:Dalk_2391 hypothetical protein YP_004514533.1 PFAM: Integrase, catalytic core; KEGG: azl:AZL_b03960 transposase YP_004514536.1 KEGG: pla:Plav_1654 hypothetical protein YP_004514537.1 KEGG: pla:Plav_1656 hypothetical protein YP_004514538.1 PFAM: Sulfotransferase; KEGG: slo:Shew_2702 hypothetical protein YP_004514539.1 KEGG: pmb:A9601_17341 hypothetical protein YP_004514540.1 KEGG: hch:HCH_06059 hypothetical protein YP_004514541.1 KEGG: gca:Galf_0830 hypothetical protein YP_004514542.1 PFAM: Cobalt chelatase, CobT subunit; KEGG: acr:Acry_1711 cobalt chelatase, pCobT subunit; SMART: von Willebrand factor, type A YP_004514543.1 KEGG: rha:RHA1_ro03584 cobaltochelatase; PFAM: ATPase associated with various cellular activities, AAA-5 YP_004514544.1 KEGG: syg:sync_2436 hypothetical protein YP_004514545.1 PFAM: Protein of unknown function DUF159; KEGG: dar:Daro_2685 hypothetical protein YP_004514546.1 PFAM: Integrase, catalytic core; KEGG: ppr:PBPRB1144 transposase YP_004514547.1 PFAM: Transposase IS3/IS911; KEGG: pna:Pnap_1740 transposase YP_004514548.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: meh:M301_2687 transcriptional regulator, TetR family YP_004514549.1 KEGG: bbt:BBta_5144 hypothetical protein YP_004514550.1 KEGG: bge:BC1002_4059 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004514551.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: afw:Anae109_1019 hypothetical protein YP_004514553.1 manually curated; PFAM: ThiJ/PfpI; Helix-turn-helix, AraC type; KEGG: AraC family transcriptional regulator; SMART: Helix-turn-helix, AraC domain YP_004514555.1 PFAM: Fatty acid desaturase, type 1; KEGG: mxa:MXAN_3390 fatty acid desaturase YP_004514556.1 TIGRFAM: Carbon storage regulator; HAMAP: Carbon storage regulator; KEGG: mca:MCA0391 carbon storage regulator; PFAM: Carbon storage regulator YP_004514557.1 KEGG: son:SO_2590 ribosomal biogenesis GTPase; TIGRFAM: GTP-binding protein, ribosome biogenesis, YlqF; PFAM: GTP-binding protein, HSR1-related YP_004514558.1 PFAM: Quinolinate synthetase A; TIGRFAM: Quinolinate synthetase A; HAMAP: Quinolinate synthase A; KEGG: mca:MCA0376 quinolinate synthetase YP_004514559.1 KEGG: noc:Noc_1094 hypothetical protein YP_004514560.1 TIGRFAM: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; KEGG: mca:MCA1776 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain YP_004514561.1 KEGG: cja:CJA_1026 hypothetical protein; TIGRFAM: Regulatory protein, FmdB, PFAM: Regulatory protein, FmdB YP_004514562.1 TIGRFAM: Dihydroorotase homodimeric type; KEGG: slt:Slit_2960 dihydroorotase, homodimeric type; PFAM: Amidohydrolase 1 YP_004514563.1 KEGG: tbd:Tbd_1534 glycosyltransferase YP_004514564.1 PFAM: Glycosyl transferase, family 2; KEGG: mca:MCA0374 glycosyl transferase, group 2 family protein YP_004514565.1 PFAM: Lipid A biosynthesis, N-terminal; KEGG: sno:Snov_3026 lipid A biosynthesis domain protein YP_004514566.1 KEGG: rpi:Rpic_0247 proline-rich transmembrane protein YP_004514568.1 PFAM: Fumarate lyase; TIGRFAM: Argininosuccinate lyase; HAMAP: Argininosuccinate lyase; KEGG: maq:Maqu_0490 argininosuccinate lyase YP_004514569.1 TIGRFAM: Amino-acid N-acetyltransferase (ArgA); KEGG: mca:MCA2084 N-acetylglutamate synthase; PFAM: Aspartate/glutamate/uridylate kinase; GCN5-related N-acetyltransferase YP_004514570.1 PFAM: Metallophosphoesterase; Calcineurin-like phosphoesterase C-terminal; KEGG: aha:AHA_3763 Icc protein YP_004514571.1 KEGG: mca:MCA2086 dinucleoside polyphosphate hydrolase; HAMAP: RNA pyrophosphohydrolase; PFAM: NUDIX hydrolase domain YP_004514572.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial; HAD-superfamily hydrolase, subfamily IB, PSPase-like; KEGG: mca:MCA2087 HAD family hydrolase YP_004514573.1 PFAM: SirA-like; KEGG: mca:MCA2088 hypothetical protein YP_004514574.1 PFAM: Tetrapyrrole methylase; Sirohaem synthase, dimerisation domain; TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; Sirohaem synthase, N-terminal; HAMAP: Siroheme synthase; KEGG: net:Neut_1002 uroporphyrin-III C-methyltransferase YP_004514576.1 KEGG: mca:MCA1668 hypothetical protein YP_004514577.1 PFAM: Argininosuccinate synthase; TIGRFAM: Argininosuccinate synthase; HAMAP: Argininosuccinate synthase; KEGG: pen:PSEEN1210 argininosuccinate synthase YP_004514578.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal; KEGG: nhl:Nhal_3504 three-deoxy-D-manno-octulosonic-acid transferase domain protein YP_004514579.1 KEGG: cyj:Cyan7822_2577 hypothetical protein YP_004514580.1 PFAM: Domain of unknown function, Spy-related; KEGG: neu:NE0512 hypothetical protein YP_004514581.1 KEGG: neu:NE0514 response regulator BaeR; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004514582.1 KEGG: neu:NE0515 sensory transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain YP_004514583.1 KEGG: asa:ASA_3376 ROK family protein; PFAM: ROK YP_004514584.1 PFAM: ABC transporter-like; KEGG: mca:MCA0168 ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004514585.1 KEGG: mca:MCA0169 ABC transporter, permease, TIGRFAM: Conserved hypothetical protein CHP00245; PFAM: Conserved hypothetical protein CHP00245 YP_004514586.1 KEGG: hypothetical protein YP_004514588.1 PFAM: Formate/nitrite transporter; KEGG: tbd:Tbd_1943 l formate transporter YP_004514589.1 KEGG: dar:Daro_0820 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; Protein phosphatase 2C, N-terminal; SMART: Serine/threonine-protein kinase domain; Protein phosphatase 2C-related; Tyrosine-protein kinase, subgroup, catalytic domain YP_004514590.1 SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; TIGRFAM: Malto-oligosyltrehalose trehalohydrolase; KEGG: nwa:Nwat_1476 malto-oligosyltrehalose trehalohydrolase; PFAM: Glycosyl hydrolase, family 13, catalytic region; Glycoside hydrolase, family 13, N-terminal YP_004514591.1 TIGRFAM: Pyruvate kinase; KEGG: tkm:TK90_2387 pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, alpha/beta YP_004514592.1 TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: nhl:Nhal_3449 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_004514593.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: gme:Gmet_1669 TonB-dependent receptor, plug YP_004514594.1 PFAM: Protein of unknown function DUF2006; KEGG: mgm:Mmc1_1599 secreted hydrolase-like protein YP_004514595.1 KEGG: slt:Slit_0937 hypothetical protein YP_004514596.1 KEGG: dap:Dacet_2058 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; Signal transduction response regulator, receiver region YP_004514597.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; KEGG: alv:Alvin_2394 response regulator receiver modulated diguanylate cyclase; SMART: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region YP_004514598.1 TIGRFAM: PAS; PFAM: Sporulation stage II, protein E C-terminal; PAS fold; PAS fold-3; KEGG: mca:MCA1683 sensory box protein; SMART: Protein phosphatase 2C-related; PAC motif; PAS YP_004514599.1 KEGG: mca:MCA0996 thiamine pyrophosphate enzyme family decarboxylase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, central region; Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_004514600.1 KEGG: nwa:Nwat_3031 anti-sigma-factor antagonist; TIGRFAM: Anti-sigma factor antagonist; PFAM: Sulphate transporter/antisigma-factor antagonist STAS YP_004514601.1 PFAM: ATP-binding region, ATPase-like; KEGG: mca:MCA1685 anti-sigma B factor YP_004514602.1 PFAM: Bacterial NAD-glutamate dehydrogenase; KEGG: nhl:Nhal_0405 NAD-glutamate dehydrogenase YP_004514603.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: mca:MCA2074 TonB domain-containing protein YP_004514604.1 SMART: 3'-5' exonuclease; Helicase/RNase D C-terminal, HRDC domain; TIGRFAM: Ribonuclease D; KEGG: tgr:Tgr7_0509 ribonuclease D; PFAM: 3'-5' exonuclease; Helicase/RNase D C-terminal, HRDC domain YP_004514605.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; MASE1; PAS fold; PAS fold-4; KEGG: slt:Slit_0879 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; PAC motif YP_004514606.1 PFAM: Uncharacterised protein family UPF0016; KEGG: app:CAP2UW1_0879 protein of unknown function UPF0016 YP_004514607.1 PFAM: Zinc/iron permease; KEGG: mca:MCA2417 ZIP zinc transporter family protein YP_004514608.1 PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); TIGRFAM: Lysyl-tRNA synthetase-related; HAMAP: Lysyl-tRNA synthetase-related; KEGG: mca:MCA1319 hypothetical protein YP_004514609.1 TIGRFAM: Translation elongation factor P; HAMAP: Translation elongation factor P; KEGG: mca:MCA1320 elongation factor P; PFAM: Elongation factor P, C-terminal; Translation elongation factor, KOW-like; Translation elongation factor P/YeiP, central YP_004514610.1 TIGRFAM: lysine-2,3-aminomutase-related protein; Protein of unknown function DUF160; KEGG: mca:MCA1321 hypothetical protein; PFAM: Radical SAM YP_004514611.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-3; PAS fold-4; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; KEGG: syn:slr2104 hybrid sensory kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif; Signal transduction response regulator, receiver region YP_004514612.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; KEGG: alv:Alvin_2394 response regulator receiver modulated diguanylate cyclase; SMART: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region YP_004514613.1 KEGG: mca:MCA1095 hypothetical protein YP_004514614.1 KEGG: mca:MCA1096 sigma-54-dependent transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core YP_004514615.1 SMART: Protein phosphatase 2C-related; KEGG: slt:Slit_0402 protein serine/threonine phosphatase YP_004514616.1 PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; KEGG: alv:Alvin_1715 pyridoxal phosphate biosynthetic protein PdxJ YP_004514617.1 TIGRFAM: Recombination protein O, RecO; HAMAP: DNA repair protein recO; KEGG: mca:MCA1461 DNA repair protein RecO; PFAM: Recombination protein O, RecO YP_004514618.1 TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; HAMAP: GTP-binding protein Era; KEGG: mca:MCA1462 GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2 YP_004514619.1 KEGG: mca:MCA1463 ribonuclease III; PFAM: Ribonuclease III; Double-stranded RNA binding; TIGRFAM: Ribonuclease III, bacterial; HAMAP: Ribonuclease III, bacterial; SMART: Ribonuclease III; Double-stranded RNA binding YP_004514620.1 KEGG: mca:MCA1464 hypothetical protein YP_004514621.1 KEGG: mca:MCA1465 signal peptidase I; TIGRFAM: Peptidase S26A, signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region YP_004514622.1 TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; HAMAP: GTP-binding protein lepA; KEGG: mca:MCA1466 GTP-binding protein LepA; PFAM: GTP-binding protein LepA, C-terminal; Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal YP_004514623.1 KEGG: mca:MCA2439 cell division protein ZipA, PFAM: ZipA, C-terminal FtsZ-binding region; SMART: ZipA, C-terminal FtsZ-binding region YP_004514624.1 KEGG: tgr:Tgr7_2026 chromosome segregation SMC protein; TIGRFAM: Chromosome segregation protein SMC; PFAM: RecF/RecN/SMC protein, N-terminal; SMCs flexible hinge YP_004514625.1 PFAM: Guanine-specific ribonuclease N1/T1; KEGG: msm:MSMEG_0208 ribonuclease YP_004514626.1 TIGRFAM: ADP-ribosyl-dinitrogen reductase hydrolase; KEGG: rru:Rru_A1008 ADP-ribosyl-(dinitrogen reductase) hydrolase; PFAM: ADP-ribosylation/Crystallin J1 YP_004514627.1 KEGG: mca:MCA1828 dinitrogenase reductase ADP-ribosyltransferase-like protein; PFAM: Dinitrogenase reductase ADP-ribosyltransferase YP_004514628.1 PFAM: thiol-disulphide oxidoreductase DCC; KEGG: rba:RB11399 hypothetical protein YP_004514629.1 KEGG: afl:Aflv_2201 phytoene dehydrogenase; TIGRFAM: Zeta-phytoene desaturase; PFAM: Amine oxidase YP_004514630.1 PFAM: Aldehyde dehydrogenase; KEGG: bbe:BBR47_48070 aldehyde dehydrogenase YP_004514631.1 KEGG: oih:OB2459 phytoene dehydrogenase; TIGRFAM: Zeta-phytoene desaturase; PFAM: Amine oxidase; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region YP_004514633.1 PFAM: Transposase IS3/IS911; KEGG: dac:Daci_3090 transposase IS3/IS911 family protein YP_004514636.1 PFAM: Integrase, catalytic core; KEGG: pol:Bpro_5321 ISPsy20, transposase IstA YP_004514637.1 KEGG: psl:Psta_2515 lipolytic protein G-D-S-L family YP_004514638.1 PFAM: Acyltransferase 3; KEGG: ret:RHE_CH00500 acyltransferase YP_004514639.1 PFAM: Integrase, catalytic core; KEGG: ppr:PBPRA2371 transposase YP_004514640.1 KEGG: pna:Pnap_1740 transposase YP_004514642.1 PFAM: Integrase, catalytic core; KEGG: hna:Hneap_1227 integrase catalytic region YP_004514644.1 TIGRFAM: Ribosomal protein L17; HAMAP: 50S ribosomal protein L17; KEGG: aeh:Mlg_0484 50S ribosomal protein L17P; PFAM: Ribosomal protein L17 YP_004514645.1 SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; KEGG: ttu:TERTU_0933 DNA-directed RNA polymerase subunit alpha; HAMAP: DNA-directed RNA polymerase, alpha subunit; PFAM: DNA-directed RNA polymerase, insert; DNA-directed RNA polymerase, dimerisation; RNA polymerase, alpha subunit, C-terminal YP_004514646.1 TIGRFAM: Ribosomal protein S4, bacterial-type; PFAM: Ribosomal protein S4; RNA-binding S4; KEGG: mca:MCA2348 30S ribosomal protein S4; SMART: RNA-binding S4 YP_004514647.1 KEGG: asa:ASA_4064 30S ribosomal protein S11; TIGRFAM: Ribosomal protein S11, bacterial-type; PFAM: Ribosomal protein S11 YP_004514648.1 KEGG: kko:Kkor_0459 ribosomal protein S13; TIGRFAM: Ribosomal protein S13, bacterial-type; PFAM: Ribosomal protein S13 YP_004514649.1 PFAM: Ribosomal protein L36; manually curated; TIGRFAM: Ribosomal protein L36; KEGG: tkm:TK90_2148 ribosomal protein L36; HAMAP: Ribosomal protein L36 YP_004514650.1 KEGG: mca:MCA2352 preprotein translocase subunit SecY; TIGRFAM: SecY protein; PFAM: SecY protein YP_004514651.1 KEGG: tgr:Tgr7_2305 ribosomal protein L15; TIGRFAM: Ribosomal protein L15, bacterial-type; PFAM: Ribosomal protein L15 YP_004514652.1 KEGG: dno:DNO_1257 50S ribosomal protein L30; TIGRFAM: Ribosomal protein L30, bacterial-type; PFAM: Ribosomal protein L30p/L7e, conserved region YP_004514653.1 KEGG: mca:MCA2355 30S ribosomal protein S5; TIGRFAM: Ribosomal protein S5, bacterial-type; PFAM: Ribosomal protein S5, C-terminal; Ribosomal protein S5, N-terminal YP_004514654.1 KEGG: aeh:Mlg_0474 50S ribosomal protein L18; TIGRFAM: Ribosomal protein L18, bacterial; PFAM: Ribosomal protein L18/L5 YP_004514655.1 KEGG: tcx:Tcr_0310 50S ribosomal protein L6; TIGRFAM: Ribosomal protein L6, bacterial-type; PFAM: Ribosomal protein L6, alpha-beta domain YP_004514656.1 PFAM: Ribosomal protein S8; KEGG: saz:Sama_0227 30S ribosomal protein S8 YP_004514657.1 KEGG: abo:ABO_0410 30S ribosomal protein S14; HAMAP: 30S ribosomal protein S14; PFAM: Ribosomal protein S14 YP_004514658.1 PFAM: Ribosomal protein L5; KEGG: mep:MPQ_0332 ribosomal protein L5 YP_004514659.1 TIGRFAM: Ribosomal protein L24; PFAM: KOW; KEGG: dar:Daro_0330 50S ribosomal protein L24; SMART: KOW YP_004514660.1 KEGG: alv:Alvin_2353 50S ribosomal protein L14; TIGRFAM: Ribosomal protein L14, bacterial-type; PFAM: Ribosomal protein L14b/L23e YP_004514661.1 KEGG: amc:MADE_00454 30S ribosomal protein S17; TIGRFAM: Ribosomal protein S17, bacterial-type; PFAM: Ribosomal protein S17 YP_004514662.1 KEGG: nhl:Nhal_2393 ribosomal protein L29; TIGRFAM: Ribosomal protein L29; PFAM: Ribosomal protein L29 YP_004514663.1 PFAM: Ribosomal protein L10e/L16; manually curated; TIGRFAM: Ribosomal protein L16; KEGG: mca:MCA2365 50S ribosomal protein L16; HAMAP: Ribosomal protein L16 YP_004514664.1 TIGRFAM: Ribosomal protein S3, bacterial; PFAM: Ribosomal protein S3, C-terminal; Ribosomal protein S3, N-terminal; K Homology, type 2; KEGG: mca:MCA2366 30S ribosomal protein S3; SMART: K Homology YP_004514665.1 KEGG: abo:ABO_0402 50S ribosomal protein L22; TIGRFAM: Ribosomal protein L22, bacterial-type; PFAM: Ribosomal protein L22/L17 YP_004514666.1 KEGG: hna:Hneap_0327 ribosomal protein S19; TIGRFAM: Ribosomal protein S19, bacterial-type; PFAM: Ribosomal protein S19/S15 YP_004514667.1 KEGG: cja:CJA_0702 50S ribosomal protein L2; TIGRFAM: Ribosomal protein L2, bacterial-type; PFAM: Ribosomal protein L2 YP_004514668.1 PFAM: Ribosomal protein L25/L23; KEGG: mca:MCA2370 ribosomal protein L23 YP_004514669.1 PFAM: Ribosomal protein L4/L1e; KEGG: mca:MCA2371 50S ribosomal protein L4 YP_004514670.1 KEGG: aeh:Mlg_0458 50S ribosomal protein L3P; TIGRFAM: Ribosomal protein L3, bacterial/organelle-type; PFAM: Ribosomal protein L3 YP_004514671.1 TIGRFAM: Ribosomal protein S10, bacterial; HAMAP: 30S ribosomal protein S10; KEGG: abo:ABO_0396 30S ribosomal protein S10; PFAM: Ribosomal protein S10 YP_004514672.1 KEGG: tgr:Tgr7_2338 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal YP_004514673.1 manually curated; TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; KEGG: mca:MCA2375 elongation factor G; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal YP_004514674.1 KEGG: aeh:Mlg_0454 30S ribosomal protein S7; TIGRFAM: Ribosomal protein S7, bacterial-type; PFAM: Ribosomal protein S7 YP_004514675.1 KEGG: kko:Kkor_0432 30S ribosomal protein S12; TIGRFAM: Ribosomal protein S12, bacterial-type; PFAM: Ribosomal protein S12/S23 YP_004514676.1 SMART: RNA polymerase, N-terminal; TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; KEGG: mca:MCA1067 DNA-directed RNA polymerase subunit beta'; HAMAP: DNA-directed RNA polymerase subunit beta'; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 5 YP_004514677.1 TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; HAMAP: DNA-directed RNA polymerase subunit beta; KEGG: mca:MCA1066 DNA-directed RNA polymerase subunit beta; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 3; RNA polymerase, beta subunit, protrusion; RNA polymerase Rpb2, domain 2; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2, domain 7 YP_004514678.1 TIGRFAM: Ribosomal protein L7/L12; HAMAP: Ribosomal protein L7/L12; KEGG: alv:Alvin_2371 50S ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12, C-terminal YP_004514679.1 KEGG: mca:MCA1064 50S ribosomal protein L10; HAMAP: 50S ribosomal protein L10; PFAM: Ribosomal protein L10 YP_004514680.1 KEGG: msu:MS0208 50S ribosomal protein L1; TIGRFAM: Ribosomal protein L1, bacterial-type; PFAM: Ribosomal protein L1 YP_004514681.1 TIGRFAM: Ribosomal protein L11, bacterial-type; PFAM: Ribosomal protein L11, C-terminal; Ribosomal protein L11, N-terminal; KEGG: mca:MCA1062 ribosomal protein L11; SMART: Ribosomal protein L11 YP_004514682.1 TIGRFAM: Transcription antitermination protein, NusG; PFAM: Transcription antitermination protein, NusG, N-terminal; KOW; KEGG: mca:MCA1061 transcription antitermination protein NusG; SMART: Transcription antitermination protein, NusG, N-terminal; KOW YP_004514683.1 KEGG: hha:Hhal_0871 preprotein translocase subunit SecE; TIGRFAM: SecE subunit of protein translocation complex; PFAM: Protein secE/sec61-gamma protein YP_004514684.1 KEGG: tgr:Tgr7_2338 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal YP_004514685.1 PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: Peptidyl-tRNA hydrolase; HAMAP: Peptidyl-tRNA hydrolase; KEGG: dno:DNO_0063 peptidyl-tRNA hydrolase YP_004514686.1 TIGRFAM: Ribosomal protein L25; HAMAP: 50S ribosomal protein L25; Ribosomal protein L25; KEGG: mca:MCA1057 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: Ribosomal protein L25, N-terminal YP_004514687.1 TIGRFAM: Phosphoribosyl pyrophosphokinase; KEGG: mca:MCA1056 ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyltransferase YP_004514688.1 PFAM: GHMP kinase; GHMP kinase, C-terminal; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: alv:Alvin_2383 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YP_004514689.1 KEGG: mca:MCA1054 outer membrane lipoprotein LolB, TIGRFAM: Outer membrane lipoprotein LolB; PFAM: Outer membrane lipoprotein LolB YP_004514690.1 PFAM: Sel1-like; Tetratricopeptide TPR-1; KEGG: mca:MCA1053 TPR domain-containing protein YP_004514691.1 TIGRFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; HAMAP: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; KEGG: mca:MCA1052 glutamyl-tRNA reductase; PFAM: Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, C-terminal YP_004514692.1 TIGRFAM: Peptide chain release factor 1; HAMAP: Peptide chain release factor 1; KEGG: mca:MCA1051 peptide chain release factor 1; PFAM: Class I peptide chain release factor; Peptide chain release factor YP_004514693.1 KEGG: mca:MCA1050 protein methyltransferase HemK; TIGRFAM: Protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; PFAM: Methyltransferase small YP_004514694.1 SMART: Mov34/MPN/PAD-1; KEGG: nhl:Nhal_0257 Mov34/MPN/PAD-1 family protein YP_004514695.1 KEGG: rrs:RoseRS_1483 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein YP_004514696.1 PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; KEGG: sli:Slin_1125 NADH dehydrogenase (quinone) YP_004514697.1 KEGG: avn:Avin_17870 hypothetical protein; HAMAP: UPF0753 protein; PFAM: Protein of unknown function DUF2309 YP_004514698.1 PFAM: Sulphate transporter; KEGG: mca:MCA2472 sulfate transporter family protein YP_004514699.1 KEGG: nhl:Nhal_3134 ATP-binding region ATPase domain protein; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004514700.1 KEGG: noc:Noc_1623 two component, sigma-54 specific, fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_004514701.1 KEGG: nhl:Nhal_2672 hypothetical protein YP_004514702.1 KEGG: alv:Alvin_0368 hypothetical protein; HAMAP: UPF0234 protein yajQ; PFAM: Protein of unknown function DUF520 YP_004514703.1 KEGG: eba:ebA6677 hypothetical protein YP_004514705.1 KEGG: pst:PSPTO_1046 virulence-associated protein YP_004514706.1 manually curated; PFAM: Helix-turn-helix type 3; KEGG: hha:Hhal_1869 transcriptional regulator; SMART: Helix-turn-helix type 3 YP_004514707.1 manually curated; TIGRFAM: TonB-dependent siderophore receptor; KEGG: ana:alr2175 ferrichrome iron receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004514708.1 KEGG: sbl:Sbal_1344 hypothetical protein YP_004514709.1 KEGG: bam:Bamb_4800 hypothetical protein YP_004514710.1 KEGG: sde:Sde_1233 TRAP dicarboxylate transporter, DctM subunit; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region YP_004514711.1 KEGG: pmy:Pmen_4120 DNA-binding response regulator CreB; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004514712.1 KEGG: cja:CJA_1407 sensory histidine kinase CreC; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain YP_004514713.1 HAMAP: Thiopurine S-methyltransferase; KEGG: psa:PST_1312 thiopurine S-methyltransferase; PFAM: Thiopurine S-methyltransferase YP_004514714.1 KEGG: ptm:GSPATT00028720001 hypothetical protein; PFAM: MORN motif; SMART: MORN motif YP_004514715.1 KEGG: mgm:Mmc1_1921 serine/threonine protein kinase; PFAM: Sulphatase-modifying factor; Serine/threonine-protein kinase-like domain; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, subgroup, catalytic domain YP_004514716.1 KEGG: hna:Hneap_1994 vault protein inter-alpha-trypsin domain protein; PFAM: Vault protein inter-alpha-trypsin; von Willebrand factor, type A; SMART: von Willebrand factor, type A; Vault protein inter-alpha-trypsin, metazoa YP_004514717.1 KEGG: hna:Hneap_1995 hypothetical protein YP_004514718.1 PFAM: Protein of unknown function DUF853, nucleotide triphosphate hydrolase, KEGG: neu:NE1263 hypothetical protein YP_004514719.1 PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; KEGG: cpb:Cphamn1_1902 phosphomannomutase YP_004514720.1 KEGG: mca:MCA0938 hypothetical protein YP_004514721.1 KEGG: mca:MCA0389 alanyl-tRNA synthetase; TIGRFAM: Alanyl-tRNA synthetase, class IIc; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Threonyl/alanyl tRNA synthetase, SAD; Phosphoesterase, DHHA1 YP_004514722.1 PFAM: Protein of unknown function DUF86; KEGG: fra:Francci3_2193 hypothetical protein YP_004514723.1 PFAM: Nucleotidyltransferase; KEGG: ami:Amir_6474 DNA polymerase beta domain protein region YP_004514725.1 manually curated; KEGG: cyh:Cyan8802_3861 hypothetical protein YP_004514726.1 KEGG: cyh:Cyan8802_3860 hypothetical protein YP_004514727.1 KEGG: tgr:Tgr7_1288 regulatory protein RecX; HAMAP: Regulatory protein recX; PFAM: Regulatory protein RecX YP_004514728.1 SMART: ATPase, AAA+ type, core; TIGRFAM: DNA recombination and repair protein RecA; KEGG: mca:MCA0387 RecA protein; HAMAP: DNA recombination and repair protein RecA; PFAM: DNA recombination and repair protein RecA YP_004514730.1 KEGG: dma:DMR_08790 hypothetical protein YP_004514731.1 PFAM: SOUL haem-binding protein; KEGG: paa:Paes_2155 SOUL heme-binding protein YP_004514732.1 KEGG: mca:MCA1268 peptide ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; SMART: ATPase, AAA+ type, core YP_004514733.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: mca:MCA1266 peptide ABC transporter, permease YP_004514734.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: mca:MCA1265 peptide ABC transporter, permease YP_004514735.1 PFAM: PilT protein, N-terminal; KEGG: gur:Gura_2455 PilT domain-containing protein YP_004514736.1 TIGRFAM: Prevent-host-death protein; KEGG: amc:MADE_00630 prevent-host-death protein YP_004514737.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: mca:MCA1264 peptide ABC transporter, periplasmic peptide-binding protein YP_004514738.1 HAMAP: Uncharacterised protein family, TER reductase; KEGG: pag:PLES_21131 trans-2-enoyl-CoA reductase; PFAM: Uncharacterised protein family, TER reductase YP_004514739.1 KEGG: alv:Alvin_0388 Crp/Fnr family transcriptional regulator; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding YP_004514741.1 KEGG: nmu:Nmul_A0053 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain YP_004514742.1 KEGG: mca:MCA1132 hypothetical protein YP_004514743.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: cts:Ctha_1325 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004514744.1 KEGG: nde:NIDE2024 hypothetical protein; PFAM: Forkhead-associated; Lytic transglycosylase-like, catalytic; SMART: Forkhead-associated YP_004514745.1 TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; KEGG: tgr:Tgr7_1579 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain YP_004514746.1 KEGG: sfu:Sfum_3151 Sel1 domain-containing protein; PFAM: Sel1-like; SMART: Sel1-like YP_004514747.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dal:Dalk_0230 OmpA/MotB domain protein YP_004514748.1 KEGG: nhl:Nhal_0762 nuclease (SNase domain protein); PFAM: Staphylococcal nuclease (SNase-like); SMART: Staphylococcal nuclease (SNase-like) YP_004514749.1 PFAM: Protein of unknown function DUF1415; KEGG: swd:Swoo_3180 hypothetical protein YP_004514750.1 KEGG: nhl:Nhal_2259 hypothetical protein YP_004514751.1 PFAM: Protein of unknown function DUF2288; KEGG: slt:Slit_2955 protein of unknown function DUF2288 YP_004514752.1 PFAM: DoxX; KEGG: shn:Shewana3_2495 DoxX family protein YP_004514753.1 PFAM: Cupin 2, conserved barrel; KEGG: tdn:Suden_1847 hypothetical protein YP_004514754.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-3; CHASE3; PAS fold; PAS fold-4; KEGG: gbm:Gbem_2131 PAS/PAC domain-containing sensor histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif YP_004514755.1 KEGG: tgr:Tgr7_1115 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004514756.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; KEGG: gca:Galf_1153 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region YP_004514757.1 KEGG: reu:Reut_A0517 helicase, C-terminal:type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004514759.1 KEGG: mca:MCA2531 ATP-dependent helicase HepA; PFAM: SNF2-related; DNA/RNA helicase, C-terminal; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal YP_004514760.1 PFAM: VanZ like protein; KEGG: nmu:Nmul_A2514 VanZ like protein YP_004514761.1 KEGG: vsa:VSAL_I3048 hypothetical protein YP_004514762.1 PFAM: Adenylylsulphate kinase, C-terminal; TIGRFAM: Adenylylsulphate kinase, C-terminal; HAMAP: Adenylyl-sulfate kinase; KEGG: cyn:Cyan7425_3345 adenylyl-sulfate kinase YP_004514763.1 KEGG: gem:GM21_3716 hypothetical protein YP_004514764.1 PFAM: Sulphur oxidation protein SoxZ; KEGG: mca:MCA0297 hypothetical protein YP_004514765.1 KEGG: mca:MCA0298 metallo-beta-lactamase YP_004514766.1 PFAM: Formylmethionine deformylase; TIGRFAM: Formylmethionine deformylase; HAMAP: Formylmethionine deformylase; KEGG: npu:Npun_R6631 peptide deformylase YP_004514767.1 KEGG: mca:MCA3107 hypothetical protein YP_004514768.1 KEGG: mca:MCA2885 HesB/YadR/YfhF family protein; TIGRFAM: FeS cluster insertion; PFAM: FeS cluster biogenesis YP_004514769.1 KEGG: mca:MCA2884 cysteine desulfurase; PFAM: Aminotransferase, class V/Cysteine desulfurase YP_004514770.1 KEGG: mca:MCA2883 Rrf2 family protein; TIGRFAM: Transcriptional regulator, Rrf2; PFAM: Transcriptional regulator, Rrf2 YP_004514771.1 KEGG: mca:MCA2611 serine acetyltransferase; TIGRFAM: Serine O-acetyltransferase YP_004514772.1 KEGG: mca:MCA2610 RNA methyltransferase; TIGRFAM: RNA methyltransferase TrmH, group 1; PFAM: tRNA/rRNA methyltransferase, SpoU YP_004514773.1 PFAM: Inositol monophosphatase; KEGG: mca:MCA2609 inositol monophosphatase YP_004514774.1 KEGG: mca:MCA3019 methylene tetrahydromethanopterin dehydrogenase/methylenetetrahydrofolate dehydrogenase, PFAM: Methylene-tetrahydromethanopterin dehydrogenase, N-terminal YP_004514775.1 KEGG: nhl:Nhal_3874 methylenetetrahydrofolate dehydrogenase (NADP(+)); PFAM: Methylene-tetrahydromethanopterin dehydrogenase, N-terminal YP_004514776.1 KEGG: spe:Spro_1848 response regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004514777.1 TIGRFAM: Prolyl-tRNA synthetase, class IIa, bacterial; HAMAP: Prolyl-tRNA synthetase; KEGG: mca:MCA2013 prolyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; YbaK/aminoacyl-tRNA synthetase associated region; Anticodon-binding YP_004514778.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: mmi:MMAR_1293 rubredoxin RubB YP_004514779.1 KEGG: psl:Psta_1811 type VI secretion system Vgr family protein; TIGRFAM: Rhs element Vgr protein, subgroup; Rhs element Vgr protein; PFAM: Rhs element Vgr protein YP_004514780.1 PFAM: PAAR motif; KEGG: fjo:Fjoh_3156 PaaR repeat-containing protein YP_004514781.1 KEGG: sus:Acid_0241 secreted protein YP_004514782.1 PFAM: Methyltransferase type 11; Tetratricopeptide TPR-1; Tetratricopeptide TPR2; KEGG: lch:Lcho_4081 methyltransferase type 12 YP_004514783.1 KEGG: reu:Reut_A0065 Mg2+ transporter protein, CorA-like; TIGRFAM: Magnesium/cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA-like YP_004514784.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: rrs:RoseRS_1075 hypothetical protein YP_004514785.1 SMART: ATPase, AAA+ type, core; manually curated; KEGG: rrs:RoseRS_3212 cyclic nucleotide-binding protein; PFAM: ABC transporter-like YP_004514786.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: xcb:XC_0112 hypothetical protein YP_004514788.1 PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; TIGRFAM: Nitrile oxidoreductase, NADPH-dependent, QueF; HAMAP: Nitrile oxidoreductase, NADPH-dependent, QueF; KEGG: nhl:Nhal_1446 7-cyano-7-deazaguanine reductase YP_004514789.1 PFAM: Type III secretion exporter; KEGG: hch:HCH_04371 flagellar protein FhlB cytoplasmic domain-containing protein YP_004514790.1 TIGRFAM: Phosphatidylserine decarboxylase; HAMAP: Phosphatidylserine decarboxylase proenzyme; KEGG: pfl:PFL_0552 phosphatidylserine decarboxylase; PFAM: Phosphatidylserine decarboxylase-related YP_004514791.1 KEGG: mca:MCA0682 preprotein translocase YajC subunit; TIGRFAM: YajC; PFAM: YajC YP_004514792.1 KEGG: mca:MCA0683 preprotein translocase subunit SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein; PFAM: SecD/SecF/SecDF export membrane protein YP_004514793.1 SMART: Nucleoside diphosphate kinase, core; HAMAP: Nucleoside diphosphate kinase; KEGG: pmy:Pmen_3504 nucleoside diphosphate kinase; PFAM: Nucleoside diphosphate kinase, core YP_004514794.1 TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN; HAMAP: Ribosomal RNA large subunit methyltransferase RlmN; KEGG: mca:MCA2887 hypothetical protein; PFAM: Radical SAM YP_004514795.1 TIGRFAM: Pilus biogenesis/stability type IV, PilW; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; KEGG: mca:MCA2888 type IV pilus biogenesis protein PilF, SMART: Tetratricopeptide repeat YP_004514796.1 PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Anticodon-binding; TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup; HAMAP: Histidyl-tRNA synthetase, class IIa, subgroup; KEGG: mca:MCA2889 histidyl-tRNA synthetase YP_004514797.1 PFAM: Protein of unknown function DUF2133; KEGG: mca:MCA2890 hypothetical protein YP_004514798.1 TIGRFAM: Outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone repeat; KEGG: mca:MCA2891 lipoprotein; SMART: Pyrrolo-quinoline quinone beta-propeller repeat YP_004514799.1 TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; HAMAP: GTP-binding, EngA; KEGG: mca:MCA2892 GTPase; PFAM: GTP-binding protein, HSR1-related YP_004514800.1 KEGG: mep:MPQ_1757 redoxin domain protein; HAMAP: thiol peroxidase; PFAM: Redoxin YP_004514801.1 KEGG: hch:HCH_01514 hypothetical protein YP_004514802.1 KEGG: mpo:Mpop_1750 formiminotransferase-cyclodeaminase; PFAM: Cyclodeaminase/cyclohydrolase YP_004514803.1 TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; KEGG: mca:MCA0509 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia, N-terminal; Cysteinyl-tRNA synthetase, class Ia, DALR YP_004514804.1 PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; KEGG: mca:MCA0516 peptidyl-prolyl cis-trans isomerase B YP_004514805.1 TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; HAMAP: UDP-2,3-diacylglucosamine hydrolase; KEGG: mca:MCA1318 UDP-2,3-diacylglucosamine hydrolase; PFAM: Metallophosphoesterase YP_004514806.1 KEGG: ttu:TERTU_2904 hypothetical protein YP_004514807.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mca:MCA2155 sulfide-quinone reductase YP_004514808.1 PFAM: Methionine sulphoxide reductase B; TIGRFAM: Methionine sulphoxide reductase B; HAMAP: Peptide methionine sulfoxide reductase msrB; KEGG: pmy:Pmen_2521 methionine sulfoxide reductase B YP_004514809.1 KEGG: net:Neut_1358 aminopeptidase 2; PFAM: Peptidase M18, aminopeptidase I YP_004514810.1 KEGG: hch:HCH_02557 hypothetical protein YP_004514811.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; HAMP linker domain; PAS fold-3; KEGG: nwa:Nwat_2894 PAS/PAC sensor(S)-containing diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; HAMP linker domain; PAS; PAC motif YP_004514812.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: cja:CJA_0755 TonB-dependent receptor YP_004514813.1 KEGG: NarL family two-component response regulator YP_004514814.1 TIGRFAM: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: mca:MCA0397 UDP-N-acetylglucosamine acyltransferase; PFAM: Bacterial transferase hexapeptide repeat YP_004514815.1 TIGRFAM: Tyrosine recombinase XerD; HAMAP: Tyrosine recombinase xerD; KEGG: mca:MCA0396 tyrosine recombinase XerD; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage YP_004514816.1 KEGG: slt:Slit_2735 methylated-DNA/protein-cysteine methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YP_004514817.1 TIGRFAM: Ribosomal protein L19; HAMAP: Ribosomal protein L19; KEGG: tgr:Tgr7_0849 ribosomal protein L19; PFAM: Ribosomal protein L19 YP_004514818.1 PFAM: tRNA (guanine-N1-)-methyltransferase; TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; KEGG: mca:MCA0394 tRNA (guanine-N1)-methyltransferase YP_004514819.1 PFAM: RimM protein; PRC-barrel; manually curated; TIGRFAM: 16S rRNA processing protein RimM; KEGG: alv:Alvin_2484 16S rRNA processing protein RimM; HAMAP: 16S rRNA processing protein RimM YP_004514820.1 TIGRFAM: Ribosomal protein S16; HAMAP: Ribosomal protein S16; KEGG: swp:swp_3768 30S ribosomal protein S16; PFAM: Ribosomal protein S16 YP_004514821.1 TIGRFAM: Signal recognition particle, SRP; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; KEGG: mca:MCA1338 signal recognition particle protein; SMART: ATPase, AAA+ type, core YP_004514822.1 PFAM: Cytochrome c assembly protein; KEGG: mca:MCA1337 hypothetical protein YP_004514824.1 PFAM: Protein of unknown function DUF115; KEGG: gme:Gmet_0447 TPR repeat-containing protein YP_004514825.1 PFAM: Flagellin, N-terminal; Flagellin, C-terminal; KEGG: hna:Hneap_0622 flagellin domain protein YP_004514826.1 SMART: Signal transduction response regulator, receiver region; HAMAP: Chemotaxis response regulator protein-glutamate methylesterase; KEGG: mep:MPQ_2641 response regulator receiver modulated CheB methylesterase; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; Signal transduction response regulator, receiver region YP_004514827.1 manually curated; HAMAP: Chemoreceptor glutamine deamidase cheD; KEGG: tmz:Tmz1t_1321 CheD, stimulates methylation of MCP protein YP_004514828.1 PFAM: MCP methyltransferase, CheR-type; KEGG: psb:Psyr_0783 protein-glutamate O-methyltransferase; SMART: MCP methyltransferase, CheR-type YP_004514829.1 KEGG: app:CAP2UW1_3443 CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein YP_004514830.1 KEGG: gem:GM21_1280 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004514831.1 KEGG: slt:Slit_1588 CheA signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, phosphotransfer (Hpt) region; Signal transduction histidine kinase, subgroup, homodimeric; CheW-like protein; SMART: CheW-like protein; Signal transduction histidine kinase, phosphotransfer (Hpt) region; ATP-binding region, ATPase-like YP_004514832.1 KEGG: rcu:RCOM_0025820 hypothetical protein YP_004514833.1 KEGG: psp:PSPPH_0807 chemotaxis protein CheY; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004514834.1 KEGG: rfr:Rfer_0898 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004514835.1 PFAM: Flagellar protein FlaG protein; KEGG: azo:azo2705 flagellar protein YP_004514836.1 KEGG: slt:Slit_2536 hypothetical protein YP_004514837.1 HAMAP: Phosphoserine aminotransferase; KEGG: slt:Slit_2537 phosphoserine transaminase; PFAM: Aminotransferase, class V/Cysteine desulfurase YP_004514838.1 KEGG: cja:CJA_1701 flagellar protein FliS; TIGRFAM: Flagellar protein FliS; PFAM: Flagellar protein FliS YP_004514839.1 PFAM: Flagellar hook-associated 2, C-terminal; Flagellar hook-associated protein 2, N-terminal; KEGG: hna:Hneap_0624 flagellar hook-associated 2 domain protein YP_004514840.1 PFAM: Flagellar protein FlaG protein; KEGG: alv:Alvin_1952 flagellar protein FlaG protein YP_004514841.1 PFAM: Flagellin, N-terminal; Flagellin, C-terminal; KEGG: hna:Hneap_0622 flagellin domain protein YP_004514842.1 TIGRFAM: Pseudaminic acid biosynthesis, PseI; KEGG: nhl:Nhal_0399 N-acylneuraminate-9-phosphate synthase; PFAM: N-acetylneuraminic acid synthase, N-terminal; SAF domain YP_004514843.1 PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; KEGG: apr:Apre_1270 protein of unknown function DUF201 YP_004514844.1 KEGG: mmg:MTBMA_c02530 phosphosulfolactate synthase; PFAM: (2R)-phospho-3-sulpholactate synthase, ComA; 2-phosphosulpholactate phosphatase YP_004514845.1 PFAM: Methyltransferase type 11; KEGG: dsa:Desal_3707 methyltransferase type 12 YP_004514846.1 TIGRFAM: Pseudaminic acid biosynthesis-associated protein PseG; KEGG: pde:Pden_3551 flagellin modification protein FlmD YP_004514847.1 TIGRFAM: Pseudaminic acid biosynthesis, PseF; KEGG: aeh:Mlg_2324 acylneuraminate cytidylyltransferase; PFAM: Acylneuraminate cytidylyltransferase YP_004514848.1 KEGG: har:HEAR1121 polysaccharide biosynthesis protein; TIGRFAM: Pseudaminic acid biosynthesis, PseC; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase YP_004514849.1 KEGG: nhl:Nhal_0393 polysaccharide biosynthesis protein CapD; TIGRFAM: Pseudaminic acid biosynthesis, PseB; PFAM: Polysaccharide biosynthesis protein CapD-like YP_004514850.1 PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: nhl:Nhal_0697 RNA-metabolising metallo-beta-lactamase YP_004514851.1 KEGG: aas:Aasi_0854 hypothetical protein; PFAM: Sel1-like; SMART: Sel1-like YP_004514853.1 KEGG: mca:MCA1306 DnaK-related protein YP_004514854.1 TIGRFAM: variant PEP-CTERM exosortase signal; PFAM: PEP-CTERM bacterial; Peptidase, C-terminal, archaeal/bacterial YP_004514855.1 PFAM: Radical SAM; KEGG: tbd:Tbd_0071 elongator protein 3/MiaB/NifB YP_004514856.1 SMART: Transcription regulator, AsnC-type; KEGG: tbd:Tbd_0072 AsnC family transcriptional regulator YP_004514857.1 KEGG: mag:amb1405 transcriptional regulator YP_004514858.1 KEGG: tbd:Tbd_0074 AsnC family transcriptional regulator YP_004514859.1 KEGG: tbd:Tbd_0074 AsnC family transcriptional regulator YP_004514860.1 PFAM: Cytochrome d1, haem region; KEGG: psa:PST_3527 heme d1 biosynthesis protein NirF YP_004514861.1 KEGG: vcj:VCD_000926 hypothetical protein YP_004514862.1 KEGG: app:CAP2UW1_2487 hypothetical protein YP_004514863.1 PFAM: Cytochrome c, class I; KEGG: bmj:BMULJ_02318 cytochrome c553 YP_004514864.1 PFAM: Cytochrome d1, haem region; KEGG: rme:Rmet_3331 cytochrome d1, heme region YP_004514865.1 KEGG: nhl:Nhal_2066 regulatory protein MarR; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004514866.1 PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: alv:Alvin_0812 4-hydroxythreonine-4-phosphate dehydrogenase YP_004514867.1 PFAM: Nucleotidyltransferase; KEGG: app:CAP2UW1_0719 DNA polymerase beta domain protein region YP_004514868.1 PFAM: Protein of unknown function DUF86; KEGG: slt:Slit_1851 protein of unknown function DUF86 YP_004514869.1 SMART: Ribosomal RNA adenine methylase transferase, N-terminal; TIGRFAM: Ribosomal RNA adenine dimethylase; KEGG: aeh:Mlg_0267 dimethyladenosine transferase; HAMAP: Ribosomal RNA adenine dimethylase; PFAM: Ribosomal RNA adenine methylase transferase YP_004514871.1 TIGRFAM: Adenylate kinase, subfamily; HAMAP: Adenylate kinase; KEGG: tgr:Tgr7_0354 adenylate kinase; PFAM: Adenylate kinase; Adenylate kinase, zinc-finger lid region YP_004514872.1 PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; TIGRFAM: 3-isopropylmalate dehydratase, large subunit region; HAMAP: 3-isopropylmalate dehydratase, large subunit region; KEGG: mca:MCA2065 isopropylmalate isomerase large subunit YP_004514873.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit region; HAMAP: 3-isopropylmalate dehydratase, small subunit region; KEGG: mca:MCA2064 isopropylmalate isomerase small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel YP_004514874.1 PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: Isopropylmalate dehydrogenase; HAMAP: Isopropylmalate dehydrogenase; KEGG: mca:MCA2063 3-isopropylmalate dehydrogenase YP_004514875.1 TIGRFAM: Aspartate-semialdehyde dehydrogenase, bacterial; KEGG: tgr:Tgr7_1248 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation region; Semialdehyde dehydrogenase, NAD-binding YP_004514876.1 TIGRFAM: Motility protein FimV, C-terminal; Motility protein FimV, N-terminal; KEGG: pag:PLES_19441 motility protein FimV YP_004514877.1 KEGG: tcx:Tcr_2179 response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase; PFAM: Signal transduction response regulator, receiver region; Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Signal transduction response regulator, receiver region; Metal-dependent phosphohydrolase, HD region YP_004514878.1 KEGG: tcx:Tcr_2180 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Extracellular solute-binding protein, family 3; PAC motif; Signal transduction response regulator, receiver region YP_004514879.1 PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; TIGRFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; HAMAP: Protein-L-isoaspartate O-methyltransferase; KEGG: tgr:Tgr7_1433 protein-L-isoaspartate O-methyltransferase YP_004514880.1 PFAM: Survival protein SurE-like phosphatase/nucleotidase; TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase; HAMAP: Multifunctional protein surE; KEGG: mca:MCA2418 stationary phase survival protein SurE YP_004514881.1 KEGG: noc:Noc_1906 Smr protein/MutS2-like; PFAM: Smr protein/MutS2 C-terminal; SMART: Smr protein/MutS2 C-terminal YP_004514882.1 KEGG: dar:Daro_3867 hypothetical protein YP_004514883.1 KEGG: pha:PSHAa1467 hypothetical protein YP_004514884.1 KEGG: ssm:Spirs_2005 hypothetical protein YP_004514885.1 KEGG: rha:RHA1_ro04983 hypothetical protein YP_004514886.1 KEGG: vpa:VP1254 hypothetical protein YP_004514887.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: lytic transglycosylase catalytic YP_004514888.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; CHASE; MASE1; PAS fold; KEGG: gca:Galf_1970 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; PAC motif YP_004514889.1 PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: tcx:Tcr_0178 pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_004514890.1 KEGG: sus:Acid_0536 DNA-3-methyladenine glycosylase I; PFAM: Methyladenine glycosylase YP_004514891.1 SMART: HNH nuclease; KEGG: sfr:Sfri_1362 hypothetical protein YP_004514892.1 SMART: Elongator protein 3/MiaB/NifB; manually curated; KEGG: mca:MCA1949 molybdenum cofactor biosynthesis protein A; TIGRFAM: Molybdenum cofactor biosynthesis protein A; PFAM: Molybdenum cofactor synthesis C-terminal; Radical SAM YP_004514894.1 KEGG: azl:AZL_a05750 ABC transporter substrate-binding protein YP_004514895.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: psa:PST_2932 sulfonate ABC transporter, permease YP_004514896.1 PFAM: ABC transporter-like; KEGG: hdn:Hden_1465 ABC transporter related protein; SMART: ATPase, AAA+ type, core YP_004514897.1 PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; Uncharacterised protein family UPF0029, Impact, C-terminal; KEGG: mfa:Mfla_1667 hypothetical protein YP_004514899.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, lipid A export, MsbA; KEGG: avn:Avin_44710 lipid A export ATP-binding/permease MsbA; PFAM: ABC transporter-like; ABC transporter, transmembrane region YP_004514900.1 PFAM: Glycosyl transferase, family 9; KEGG: bmj:BMULJ_02299 heptosyltransferase III YP_004514901.1 PFAM: Glycosyl transferase, family 25; KEGG: vsp:VS_0190 glycosyltransferase YP_004514902.1 PFAM: O-antigen ligase-related; KEGG: meh:M301_2021 O-antigen polymerase YP_004514903.1 PFAM: Glycosyl transferase, family 2; KEGG: gsu:GSU2254 glycosyl transferase, group 2 family protein YP_004514904.1 PFAM: Glycosyl transferase, family 2; KEGG: rpi:Rpic_2399 glycosyl transferase 2 YP_004514905.1 KEGG: tgr:Tgr7_1349 hypothetical protein YP_004514907.1 KEGG: cja:CJA_2132 CheW; PFAM: CheW-like protein; SMART: CheW-like protein YP_004514908.1 KEGG: tgr:Tgr7_1346 CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein YP_004514909.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: mmw:Mmwyl1_3421 cobyrinic acid ac-diamide synthase YP_004514910.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: nhl:Nhal_3607 OmpA/MotB domain protein YP_004514911.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: ppg:PputGB1_3905 flagellar motor protein YP_004514912.1 KEGG: psa:PST_2566 chemotaxis histidine kinase CheA; PFAM: CheW-like protein; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup, homodimeric; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: CheW-like protein; ATP-binding region, ATPase-like; Signal transduction histidine kinase, phosphotransfer (Hpt) region YP_004514913.1 PFAM: Chemotaxis phosphatase, CheZ; KEGG: tgr:Tgr7_1340 chemotaxis phosphatase, CheZ YP_004514914.1 KEGG: aeh:Mlg_0986 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004514915.1 KEGG: nhl:Nhal_3609 RNA polymerase sigma factor, FliA/WhiG family; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4 YP_004514916.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: nhl:Nhal_3610 cobyrinic acid ac-diamide synthase YP_004514917.1 TIGRFAM: Signal-recognition particle (SRP)-type GTPase; PFAM: Signal recognition particle, SRP54 subunit, GTPase; KEGG: aha:AHA_1380 flagellar biosynthesis protein FlhF; SMART: ATPase, AAA+ type, core YP_004514918.1 KEGG: tgr:Tgr7_1335 flagellar biosynthesis protein FlhA; TIGRFAM: Flagellar biosynthesis protein FlhA; PFAM: Type III secretion system FHIPEP YP_004514919.1 KEGG: tgr:Tgr7_1334 flagellar biosynthetic protein FlhB; TIGRFAM: Flagellar biosynthetic protein FlhB; PFAM: Type III secretion exporter YP_004514920.1 KEGG: tgr:Tgr7_1333 flagellar biosynthetic protein FliR; TIGRFAM: Flagellar biosynthesis protein FliR; PFAM: Type III secretion system inner membrane R protein YP_004514921.1 KEGG: hna:Hneap_0711 flagellar biosynthetic protein FliQ; TIGRFAM: Flagellar biosynthesis protein FliQ; PFAM: Bacterial export protein FliQ, family 3 YP_004514922.1 KEGG: alv:Alvin_2932 flagellar biosynthetic protein FliP; TIGRFAM: Flagellar transport protein FliP; PFAM: Type III secretion system inner membrane P protein YP_004514923.1 KEGG: tcx:Tcr_0739 flagellar biosynthesis protein, FliO; TIGRFAM: Flagellar biosynthesis protein, FliO; PFAM: Flagellar biosynthesis protein, FliO YP_004514924.1 KEGG: hch:HCH_05180 flagellar motor switch protein; TIGRFAM: Flagellar motor switch FliN; PFAM: Surface presentation of antigen (SpoA) YP_004514925.1 KEGG: tgr:Tgr7_1328 flagellar motor switch protein FliM; TIGRFAM: Flagellar motor switch protein FliM; PFAM: Flagellar motor switch protein FliM; Surface presentation of antigen (SpoA) YP_004514926.1 PFAM: Flagellar basal body-associated protein FliL; KEGG: mmb:Mmol_0933 flagellar basal body-associated protein FliL YP_004514927.1 TIGRFAM: Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype; Ketose-bisphosphate aldolase, class-II; KEGG: tau:Tola_1258 fructose-bisphosphate aldolase; PFAM: Ketose-bisphosphate aldolase, class-II YP_004514928.1 TIGRFAM: Transaldolase AB; HAMAP: Transaldolase; KEGG: mca:MCA3045 transaldolase B; PFAM: Transaldolase YP_004514929.1 KEGG: mca:MCA3048 hypothetical protein YP_004514930.1 TIGRFAM: Transketolase, bacterial-like; KEGG: mca:MCA3046 transketolase; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal YP_004514931.1 TIGRFAM: 6-phospho 3-hexuloisomerase; KEGG: mca:MCA3050 SIS domain-containing protein; PFAM: Sugar isomerase (SIS) YP_004514932.1 TIGRFAM: 3-hexulose-6-phosphate synthase; KEGG: mca:MCA2738 hexulose-6-phosphate synthase/SIS domain-containing protein; PFAM: Orotidine 5'-phosphate decarboxylase, core YP_004514933.1 TIGRFAM: Competence protein ComEA, helix-hairpin-helix region; KEGG: tcx:Tcr_1673 competence protein ComEA helix-hairpin-helix region YP_004514934.1 TIGRFAM: tRNA (mo5U34)-methyltransferase; HAMAP: tRNA (mo5U34)-methyltransferase; KEGG: gme:Gmet_2531 methyltransferase; PFAM: tRNA (mo5U34)-methyltransferase YP_004514935.1 TIGRFAM: tRNA (cmo5U34)-methyltransferase; HAMAP: tRNA (cmo5U34)-methyltransferase; KEGG: glo:Glov_2669 methyltransferase; PFAM: Methyltransferase type 11 YP_004514936.1 PFAM: Toluene tolerance; KEGG: mca:MCA2792 hypothetical protein YP_004514937.1 KEGG: mca:MCA2793 delta-aminolevulinic acid dehydratase; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase YP_004514938.1 KEGG: noc:Noc_1407 hypothetical protein YP_004514939.1 TIGRFAM: Quinate/shikimate 5-dehydrogenase; HAMAP: Shikimate dehydrogenase; KEGG: mca:MCA2794 shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YP_004514940.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: tgr:Tgr7_2694 metal dependent phosphohydrolase YP_004514941.1 PFAM: Metal-dependent hydrolase HDOD; Cyclic nucleotide-binding; KEGG: maq:Maqu_2422 cyclic nucleotide-binding protein YP_004514942.1 KEGG: mca:MCA1253 oligopeptidase A; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F YP_004514944.1 TIGRFAM: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; HAMAP: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; KEGG: mca:MCA1490 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_004514945.1 TIGRFAM: Succinyldiaminopimelate transaminase, beta/gammaproteobacteria; KEGG: mca:MCA1491 succinyldiaminopimelate transaminase; PFAM: Aminotransferase, class I/II YP_004514946.1 PFAM: Peptidase M48, Ste24p; KEGG: neu:NE1475 hypothetical protein YP_004514947.1 KEGG: yen:YE0828 competence damage-inducible protein A; TIGRFAM: CinA, C-terminal; PFAM: CinA, C-terminal YP_004514948.1 PFAM: Protein of unknown function DUF502; KEGG: mca:MCA0167 hypothetical protein YP_004514949.1 KEGG: app:CAP2UW1_2592 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004514950.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: nhl:Nhal_1254 NAD-dependent epimerase/dehydratase YP_004514951.1 PFAM: Protein of unknown function DUF2269, transmembrane; KEGG: nhl:Nhal_1253 integral membrane protein YP_004514952.1 KEGG: app:CAP2UW1_2589 hypothetical protein YP_004514953.1 KEGG: pla:Plav_0433 hypothetical protein YP_004514955.1 KEGG: sfu:Sfum_1537 hypothetical protein YP_004514956.1 KEGG: hypothetical protein; manually curated; PFAM: Ribosomal protein L7/L12, C-terminal YP_004514957.1 KEGG: swd:Swoo_0714 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; TIGRFAM: Delta-1-pyrroline-5-carboxylate dehydrogenase 3; PFAM: Aldehyde dehydrogenase; Proline dehydrogenase YP_004514958.1 PFAM: Nucleotidyltransferase; KEGG: vap:Vapar_3618 DNA polymerase beta domain protein region YP_004514959.1 PFAM: Protein of unknown function DUF86; KEGG: avn:Avin_50240 hypothetical protein YP_004514960.1 PFAM: Cation transporter; KEGG: nhl:Nhal_3151 cation transporter YP_004514961.1 PFAM: Regulator of K+ conductance, N-terminal; KEGG: nhl:Nhal_3150 TrkA-N domain protein YP_004514962.1 HAMAP: S-adenosyl-L-dependent RNA methyltransferase, bacteria,; KEGG: mca:MCA0712 23S rRNA m(2)G2445 methyltransferase; PFAM: RNA methylase; THUMP; Protein of unknown function methylase YP_004514963.1 KEGG: aap:NT05HA_0393 acylphosphatase; HAMAP: Acylphosphatase; PFAM: Acylphosphatase-like YP_004514964.1 KEGG: pat:Patl_1835 hypothetical protein YP_004514965.1 TIGRFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; HAMAP: Porphobilinogen deaminase; KEGG: mca:MCA3060 porphobilinogen deaminase; PFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase YP_004514966.1 PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; KEGG: mca:MCA3061 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase YP_004514967.1 PFAM: HemX; KEGG: mca:MCA3061 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase YP_004514968.1 PFAM: HemY, N-terminal; KEGG: mca:MCA3062 HemY protein YP_004514969.1 KEGG: ecc:c3205 hypothetical protein YP_004514971.1 TIGRFAM: Carboxylyase-related; HAMAP: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; KEGG: cja:CJA_0362 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: Carboxylyase-related YP_004514973.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: mei:Msip34_1918 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_004514974.1 PFAM: Cytidylyltransferase; TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; HAMAP: Coenzyme A biosynthesis protein; KEGG: mca:MCA0066 pantetheine-phosphate adenylyltransferase YP_004514975.1 TIGRFAM: Conserved hypothetical protein CHP00095; KEGG: mca:MCA0065 methyltransferase, PFAM: Protein of unknown function methylase YP_004514976.1 PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: mca:MCA0064 hypothetical protein YP_004514977.1 KEGG: mca:MCA0063 M16 family peptidase; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal YP_004514978.1 TIGRFAM: Protohaem IX farnesyltransferase; HAMAP: Protohaem IX farnesyltransferase; KEGG: mca:MCA0062 protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase YP_004514979.1 PFAM: Glycosyl transferase, family 3, N-terminal; KEGG: hch:HCH_02544 hypothetical protein YP_004514980.1 PFAM: Type IV pilus assembly PilZ YP_004514981.1 KEGG: cps:CPS_4077 lipoprotein YP_004514982.1 KEGG: pru:PRU_2860 FKBP family peptidyl-prolyl cis-trans isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal YP_004514983.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: azo:azo0629 hypothetical protein YP_004514984.1 KEGG: pol:Bpro_0719 hypothetical protein YP_004514985.1 KEGG: azo:azo0631 HD-domain-containing protein; PFAM: GAF; Signal transduction response regulator, receiver region; Metal-dependent phosphohydrolase, HD region, subdomain; SMART: GAF; Signal transduction response regulator, receiver region; Metal-dependent phosphohydrolase, HD region YP_004514986.1 KEGG: pol:Bpro_0721 adenylate/guanylate cyclase; PFAM: CHASE2; Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase YP_004514987.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; HAMP linker domain; GAF; PAS fold-4; KEGG: meh:M301_1495 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; HAMP linker domain; GAF; PAS; PAC motif YP_004514988.1 KEGG: gca:Galf_1308 phosphonate ABC transporter, periplasmic phosphonate-binding protein YP_004514989.1 KEGG: mca:MCA0157 hypothetical protein YP_004514990.1 KEGG: gpb:HDN1F_24550 probable methyl-accepting chemotaxis protein IV; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004514991.1 KEGG: gpb:HDN1F_24560 hypothetical protein; TIGRFAM: PAS; PFAM: PAS fold-3 YP_004514992.1 KEGG: rru:Rru_A0637 hypothetical protein YP_004514993.1 TIGRFAM: Ribosomal protein L34; HAMAP: 50S ribosomal protein L34; KEGG: pml:ATP_00378 50S ribosomal protein L34; PFAM: Ribosomal protein L34 YP_004514994.1 PFAM: Ribonuclease P; manually curated; TIGRFAM: Ribonuclease P; KEGG: mca:MCA3035 ribonuclease P protein component; HAMAP: Ribonuclease P YP_004514995.1 PFAM: Protein of unknown function DUF37; manually curated; TIGRFAM: Protein of unknown function DUF37; KEGG: alv:Alvin_3124 hypothetical protein; HAMAP: Protein of unknown function DUF37 YP_004514996.1 TIGRFAM: Membrane insertion protein, OxoA/YidC, N-terminal; Membrane insertion protein, OxaA/YidC, core; HAMAP: Membrane protein oxaA; KEGG: mca:MCA3037 inner membrane protein, 60 kDa; PFAM: Membrane insertion protein, OxaA/YidC YP_004514997.1 TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; HAMAP: tRNA modification GTPase TrmE; KEGG: tcx:Tcr_2195 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related YP_004514998.1 PFAM: Plasmid maintenance system killer; KEGG: nde:NIDE1719 toxin of proteic killer gene system YP_004514999.1 TIGRFAM: Addiction module antidote protein, HigA; KEGG: nde:NIDE1720 antidote of proteic killer gene system YP_004515000.1 PFAM: Integrase, catalytic core; KEGG: azl:AZL_b03960 transposase YP_004515001.1 SMART: HTH transcriptional regulator, ArsR; KEGG: rfr:Rfer_3667 ArsR family transcriptional regulator YP_004515002.1 KEGG: psa:PST_0240 arsenate reductase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight YP_004515003.1 PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: rpf:Rpic12D_0651 arsenical resistance operon trans-acting repressor ArsD YP_004515004.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, anion-transporting; KEGG: mfa:Mfla_1491 arsenite-activated ATPase (ArsA); PFAM: ATPase, anion-transporting YP_004515005.1 KEGG: bmj:BMULJ_06257 hypothetical protein YP_004515006.1 KEGG: rrs:RoseRS_1917 arsenical-resistance protein; TIGRFAM: Arsenical-resistance protein ACR3; PFAM: Bile acid:sodium symporter YP_004515007.1 KEGG: mca:MCA0318 SCO1/SenC family protein/methylamine utilization protein MauG, PFAM: Di-haem cytochrome c peroxidase; Copper chaperone SCO1/SenC YP_004515008.1 PFAM: Chromate resistance exported protein; KEGG: dal:Dalk_2290 WD-40 repeat protein YP_004515009.1 PFAM: ABC transporter-like; KEGG: pam:PANA_3315 FbpC; SMART: ATPase, AAA+ type, core YP_004515010.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dal:Dalk_2292 binding-protein-dependent transport systems inner membrane component YP_004515011.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: dal:Dalk_2293 extracellular solute-binding protein family 1 YP_004515012.1 KEGG: rcu:RCOM_2085040 hypothetical protein YP_004515013.1 SMART: Rhodanese-like; KEGG: mpd:MCP_2739 hypothetical protein YP_004515014.1 KEGG: dal:Dalk_2285 hypothetical protein YP_004515015.1 PFAM: WD40-like Beta Propeller; KEGG: Tol-Pal system beta propeller repeat protein TolB YP_004515017.1 KEGG: mpi:Mpet_1589 YD repeat protein; TIGRFAM: RHS repeat-associated core domain; YD repeat; PFAM: YD repeat YP_004515019.1 PFAM: PKD; KEGG: dal:Dalk_2289 PKD domain containing protein YP_004515020.1 KEGG: pat:Patl_1068 hypothetical protein YP_004515021.1 KEGG: bha:BH1848 hypothetical protein; PFAM: FAD dependent oxidoreductase; Amine oxidase YP_004515023.1 PFAM: AMP-dependent synthetase/ligase; KEGG: xop:PXO_03741 AMP-ligase YP_004515024.1 PFAM: Monooxygenase, FAD-binding; KEGG: sfr:Sfri_0342 tryptophan halogenase YP_004515025.1 KEGG: pfl:PFL_0464 3-oxoacyl-(acyl carrier protein) synthase I; PFAM: Beta-ketoacyl synthase, C-terminal; Beta-ketoacyl synthase, N-terminal YP_004515026.1 PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: pst:PSPTO_5108 hypothetical protein YP_004515027.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase, KEGG: sml:Smlt4557 3-oxoacyl-[acyl-carrier protein] reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004515028.1 KEGG: sbm:Shew185_0325 3-oxoacyl-(acyl carrier protein) synthase II; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal YP_004515029.1 KEGG: pen:PSEEN0364 hypothetical protein YP_004515030.1 KEGG: smt:Smal_3924 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase YP_004515031.1 KEGG: abc:ACICU_00519 acyl carrier protein YP_004515032.1 PFAM: Phosphopantetheine-binding; KEGG: cja:CJA_0108 acyl carrier protein YP_004515033.1 KEGG: spe:Spro_0892 inner membrane protein YP_004515034.1 KEGG: pfo:Pfl01_0436 AMP-dependent synthetase and ligase YP_004515035.1 PFAM: Glycosyl transferase, family 2; KEGG: efe:EFER_3458 acyltransferase YP_004515036.1 PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: son:SO_4373 glycosyl transferase, group 2 family protein YP_004515037.1 PFAM: Thioesterase superfamily; KEGG: aha:AHA_3389 4-hydroxybenzoyl-CoA thioesterase domain-containing protein YP_004515038.1 PFAM: Protein of unknown function DUF81; KEGG: ter:Tery_0309 hypothetical protein YP_004515039.1 KEGG: dak:DaAHT2_0585 hypothetical protein YP_004515040.1 PFAM: Monooxygenase, FAD-binding; KEGG: bpr:GBP346_A2174 alkylhalidase YP_004515042.1 KEGG: tgr:Tgr7_2011 molybdenum cofactor biosynthesis protein B; TIGRFAM: Molybdenum cofactor biosynthesis protein B, proteobacteria; Molybdenum cofactor synthesis; PFAM: Molybdopterin binding YP_004515043.1 PFAM: Protein of unknown function DUF423; KEGG: mca:MCA2407 hypothetical protein YP_004515044.1 PFAM: Protein of unknown function DUF2495; KEGG: paa:Paes_1487 membrane protein YP_004515045.1 TIGRFAM: Peptidase M1, alanyl aminopeptidase; KEGG: mca:MCA0774 aminopeptidase N; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal YP_004515046.1 HAMAP: Imidazoleglycerol-phosphate dehydratase; KEGG: tgr:Tgr7_0213 imidazoleglycerol-phosphate dehydratase; PFAM: Imidazoleglycerol-phosphate dehydratase YP_004515047.1 TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; HAMAP: Imidazole glycerol phosphate synthase, subunit H; KEGG: mca:MCA2804 amidotransferase HisH; PFAM: Glutamine amidotransferase class-I, C-terminal YP_004515048.1 PFAM: Histidine biosynthesis; TIGRFAM: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; HAMAP: 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; KEGG: mca:MCA2803 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_004515049.1 PFAM: Histidine biosynthesis; TIGRFAM: Histidine biosynthesis, HisF; HAMAP: Imidazole glycerol phosphate synthase subunit hisF; KEGG: mmw:Mmwyl1_0751 imidazoleglycerol phosphate synthase, cyclase subunit YP_004515050.1 HAMAP: Phosphoribosyl-AMP cyclohydrolase; KEGG: mca:MCA2801 phosphoribosyl-AMP cyclohydrolase; PFAM: Phosphoribosyl-AMP cyclohydrolase YP_004515051.1 PFAM: Integrase, catalytic core, phage; KEGG: bpy:Bphyt_0269 integrase YP_004515052.1 KEGG: pmy:Pmen_2111 hypothetical protein YP_004515053.1 PFAM: Zonular occludens toxin; KEGG: mfa:Mfla_1458 hypothetical protein YP_004515056.1 KEGG: vex:VEA_003457 hypothetical protein YP_004515063.1 SMART: Helix-turn-helix type 3; KEGG: eca:ECA2636 phage repressor protein C YP_004515064.1 PFAM: Restriction endonuclease, type IV-like, Mrr; DNA topoisomerase, type IA, zn finger; KEGG: afr:AFE_2769 restriction endonuclease YP_004515065.1 KEGG: nhl:Nhal_1263 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004515066.1 PFAM: DNA methylase, adenine-specific; KEGG: N-6 DNA methylase YP_004515067.1 KEGG: dap:Dacet_1979 hypothetical protein YP_004515068.1 PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: ccs:CCNA_00657 type I restriction-modification system specificity subunit YP_004515069.1 PFAM: Nucleotidyltransferase; KEGG: pna:Pnap_0133 DNA polymerase beta subunit YP_004515070.1 PFAM: Protein of unknown function DUF86; KEGG: neu:NE2225 hypothetical protein YP_004515071.1 PFAM: ATPase associated with various cellular activities, AAA-4; KEGG: gka:GK0575 hypothetical protein YP_004515072.1 KEGG: dze:Dd1591_4250 protein of unknown function DUF450; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal YP_004515074.1 PFAM: Protein of unknown function DUF980; KEGG: tcx:Tcr_2033 hypothetical protein YP_004515075.1 KEGG: hch:HCH_04677 colanic acid biosynthsis UDP-glucose lipid carrier transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase, WcaJ; Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase YP_004515076.1 KEGG: mfa:Mfla_2194 hypothetical protein YP_004515077.1 PFAM: PEP-CTERM bacterial; KEGG: mfa:Mfla_2194 hypothetical protein YP_004515078.1 KEGG: rpe:RPE_1094 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR-4; Tetratricopeptide TPR2; SMART: Tetratricopeptide repeat YP_004515079.1 KEGG: rpe:RPE_1095 eight transmembrane protein EpsH; TIGRFAM: Methanolan biosynthesis EpsI; Exosortase, EpsH; PFAM: Exosortase EpsH-related YP_004515080.1 KEGG: ccb:Clocel_2600 hypothetical protein; PFAM: PA14; Glycoside hydrolase, family 5; SMART: PA14 YP_004515083.1 KEGG: gme:Gmet_1506 tetratricopeptide TPR_4; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; Tetratricopeptide TPR-4; SMART: Tetratricopeptide repeat YP_004515084.1 KEGG: ttu:TERTU_4316 glycosyltransferase 4 domain protein; manually curated; PFAM: Glycosyl transferase, group 1 YP_004515085.1 PFAM: Glycosyl transferase, family 2; KEGG: dak:DaAHT2_1756 glycosyl transferase 2 YP_004515086.1 PFAM: Glycosyl transferase, family 2; KEGG: cyc:PCC7424_5290 glycosyl transferase 2 YP_004515087.1 KEGG: acp:A2cp1_2967 glycosyl transferase 2 YP_004515088.1 PFAM: Glycosyl transferase, group 1; KEGG: cyt:cce_2100 glycosyl transferase YP_004515089.1 PFAM: Methyltransferase type 11; KEGG: cyj:Cyan7822_3759 type 11 methyltransferase YP_004515090.1 PFAM: Polysaccharide biosynthesis protein; KEGG: ppu:PP_3132 polysaccharide biosynthesis protein YP_004515091.1 manually curated; KEGG: bbt:BBta_0993 hypothetical protein YP_004515092.1 KEGG: amr:AM1_0645 hypothetical protein; PFAM: PA14; SMART: PA14 YP_004515093.1 KEGG: nmu:Nmul_A0257 hypothetical protein YP_004515094.1 PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: nmu:Nmul_A0256 oxidoreductase-like YP_004515095.1 KEGG: gka:GK3311 teichoic acid biosynthesis; TIGRFAM: Glycosyl transferase WecB/TagA/CpsF; PFAM: Glycosyl transferase WecB/TagA/CpsF YP_004515096.1 KEGG: nde:NIDE2409 exopolysaccharide biosynthesis related tyrosine-protein kinase YP_004515097.1 PFAM: Lipopolysaccharide biosynthesis; KEGG: nde:NIDE2408 lipopolysaccharide biosynthesis protein YP_004515098.1 KEGG: pen:PSEEN2948 hypothetical protein YP_004515099.1 PFAM: Polysaccharide export protein; Soluble ligand binding domain; KEGG: nhl:Nhal_3337 polysaccharide export protein YP_004515101.1 HAMAP: phosphoketolase; KEGG: gca:Galf_1757 phosphoketolase; PFAM: Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal YP_004515102.1 KEGG: ttu:TERTU_4035 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: Cytochrome bd ubiquinol oxidase, subunit II; PFAM: Cytochrome bd ubiquinol oxidase, subunit II YP_004515103.1 PFAM: Cytochrome bd ubiquinol oxidase, subunit I; KEGG: swp:swp_1469 cytochrome bd ubiquinol oxidase subunit I YP_004515104.1 TIGRFAM: Signal transduction histidine kinase, phosphate regulon sensor PhoR; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: mca:MCA3104 histidine protein kinase PhoR; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004515105.1 TIGRFAM: Signal transduction response regulator, phosphate regulon transcriptional regulatory protein phoB; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; KEGG: mca:MCA3105 DNA-binding response regulator PhoB; SMART: Signal transduction response regulator, receiver region YP_004515106.1 KEGG: azo:azo0662 hypothetical protein YP_004515107.1 PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; SurA N-terminal; KEGG: mca:MCA0533 peptidyl-prolyl cis-trans isomerse D YP_004515108.1 KEGG: mca:MCA0532 DNA-binding protein HU-beta; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein YP_004515109.1 SMART: Peptidase S16, lon N-terminal; ATPase, AAA+ type, core; TIGRFAM: Peptidase S16, ATP-dependent protease La; KEGG: mca:MCA0531 ATP-dependent protease La; PFAM: Peptidase S16, lon C-terminal; Peptidase S16, lon N-terminal; ATPase, AAA-type, core YP_004515110.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Clp protease, ATP-binding subunit ClpX; KEGG: mca:MCA0530 ATP-dependent protease ATP-binding subunit ClpX; HAMAP: Clp protease, ATP-binding subunit ClpX; PFAM: ATPase associated with various cellular activities, AAA-2; Zinc finger, C4-type; Clp ATPase, C-terminal YP_004515111.1 PFAM: Peptidase S14, ClpP; TIGRFAM: Peptidase S14, ClpP; HAMAP: ATP-dependent Clp protease proteolytic subunit; KEGG: mca:MCA0242 ATP-dependent Clp protease proteolytic subunit YP_004515112.1 TIGRFAM: Trigger factor; HAMAP: Trigger factor; KEGG: tkm:TK90_0572 trigger factor; PFAM: Trigger factor, ribosome-binding, bacterial; Peptidyl-prolyl cis-trans isomerase, FKBP-type; Trigger factor, C-terminal, bacterial YP_004515113.1 PFAM: Protein of unknown function DUF192; KEGG: pmo:Pmob_0461 hypothetical protein YP_004515114.1 SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup; TIGRFAM: DNA topoisomerase I, bacterial-type; KEGG: mca:MCA2839 DNA topoisomerase I; PFAM: DNA topoisomerase, type IA, central; Toprim domain; DNA topoisomerase, type IA, zn finger YP_004515115.1 KEGG: mca:MCA2840 hypothetical protein; HAMAP: Protein smg; PFAM: Protein of unknown function DUF494 YP_004515116.1 KEGG: nwa:Nwat_3069 DNA protecting protein DprA; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A YP_004515117.1 PFAM: Peptidoglycan-binding lysin domain; KEGG: nwa:Nwat_3070 peptidoglycan-binding lysin domain-containing protein YP_004515118.1 KEGG: dps:DP0023 GDP-L-fucose synthetase; PFAM: NAD-dependent epimerase/dehydratase YP_004515119.1 TIGRFAM: GDP-mannose 4,6-dehydratase; KEGG: tau:Tola_2053 GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004515120.1 TIGRFAM: Isocitrate dehydrogenase NADP-dependent, eukaryotic; KEGG: bba:Bd3723 isocitrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase YP_004515121.1 KEGG: tgr:Tgr7_3066 transcriptional regulator, TraR/DksA family YP_004515122.1 TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E; KEGG: mca:MCA1537 twitching motility protein PilT; SMART: ATPase, AAA+ type, core YP_004515123.1 KEGG: mca:MCA1538 twitching motility protein PilU; TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E YP_004515124.1 TIGRFAM: Lytic murein transglycosylase B; KEGG: lytic murein transglycosylase B YP_004515125.1 KEGG: cja:CJA_0784 hypothetical protein YP_004515127.1 KEGG: sus:Acid_1755 two component LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal YP_004515128.1 KEGG: sna:Snas_6341 bilirubin oxidase; PFAM: Multicopper oxidase, type 2; Multicopper oxidase, type 3 YP_004515129.1 KEGG: hoh:Hoch_4298 electron transport protein SCO1/SenC YP_004515130.1 KEGG: sna:Snas_6342 hypothetical protein YP_004515131.1 PFAM: Copper chaperone SCO1/SenC; KEGG: gsu:GSU1398 SCO1/SenC family protein YP_004515132.1 KEGG: slt:Slit_1812 hypothetical protein YP_004515133.1 KEGG: spl:Spea_1502 hypothetical protein YP_004515134.1 PFAM: Protein of unknown function DUF692; KEGG: mep:MPQ_1794 hypothetical protein YP_004515135.1 PFAM: Protein of unknown function DUF2063; KEGG: mmb:Mmol_1967 hypothetical protein YP_004515136.1 PFAM: DoxX; KEGG: mmb:Mmol_1090 DoxX family protein YP_004515137.1 KEGG: dba:Dbac_1613 hypothetical protein YP_004515138.1 PFAM: Radical SAM; KEGG: nhl:Nhal_1112 radical SAM domain protein YP_004515139.1 KEGG: nhl:Nhal_1454 outer membrane lipoprotein Slp; TIGRFAM: Outer membrane lipoprotein Slp; PFAM: Outer membrane lipoprotein Slp YP_004515141.1 KEGG: gvi:glr2981 hypothetical protein YP_004515142.1 PFAM: TonB-dependent receptor, plug; KEGG: mca:MCA2180 TonB-dependent receptor YP_004515143.1 KEGG: rpd:RPD_1166 HupE/UreJ protein YP_004515144.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: pva:Pvag_2307 tRNA-specific adenosine deaminase YP_004515145.1 KEGG: afr:AFE_1674 SUA5/YciO/YrdC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal; SUA5 YP_004515147.1 KEGG: ppw:PputW619_2065 5'-nucleotidase; PFAM: 5-nucleotidase YP_004515148.1 KEGG: pph:Ppha_2270 hypothetical protein YP_004515150.1 KEGG: mca:MCA0777 LuxR family DNA binding response regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004515151.1 PFAM: PepSY-associated TM helix; KEGG: nde:NIDE2177 hypothetical protein YP_004515152.1 KEGG: neu:NE0549 TonB-dependent receptor protein; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal YP_004515153.1 PFAM: FecR protein; KEGG: pfl:PFL_3155 sigma factor regulatory protein FecR/PupR family YP_004515154.1 KEGG: pfl:PFL_4080 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004515155.1 PFAM: Carbonic anhydrase; KEGG: tpr:Tpau_2947 carbonic anhydrase YP_004515156.1 PFAM: Protein of unknown function DUF1330; KEGG: hna:Hneap_0092 protein of unknown function DUF1330 YP_004515157.1 KEGG: vvy:VV1875 hypothetical protein YP_004515159.1 PFAM: Integrase, catalytic core; KEGG: azl:AZL_b03960 transposase YP_004515160.1 KEGG: azo:azo1851 hypothetical protein YP_004515162.1 PFAM: Polyketide cyclase/dehydrase; KEGG: mca:MCA0789 MxaD protein YP_004515163.1 KEGG: mca:MCA3048 hypothetical protein YP_004515164.1 KEGG: mca:MCA0777 LuxR family DNA binding response regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004515165.1 TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; KEGG: mca:MCA0779 methanol dehydrogenase, large subunit; PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; PQQ-dependent enzyme, C-terminal YP_004515166.1 TIGRFAM: methanol oxidation system protein MoxJ; PFAM: Extracellular solute-binding protein, family 3; KEGG: vei:Veis_1828 extracellular solute-binding protein; SMART: Extracellular solute-binding protein, family 3 YP_004515167.1 KEGG: mca:MCA0781 cytochrome c family protein; TIGRFAM: cytochrome c(L), periplasmic; PFAM: Cytochrome c, class I YP_004515168.1 KEGG: sno:Snov_4191 alcohol dehydrogenase (acceptor); PFAM: Methanol dehydrogenase, beta subunit YP_004515169.1 KEGG: sno:Snov_4192 ATPase associated with various cellular activities AAA_3; PFAM: ATPase associated with various cellular activities, AAA-3; SMART: ATPase, AAA+ type, core YP_004515172.1 KEGG: mca:MCA0784 hypothetical protein YP_004515173.1 KEGG: mca:MCA0785 MxaA protein YP_004515174.1 KEGG: mca:MCA0786 MxaC protein, PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A YP_004515175.1 KEGG: mca:MCA0787 MxaK protein YP_004515176.1 SMART: von Willebrand factor, type A; KEGG: mca:MCA0788 MxaL protein YP_004515177.1 KEGG: rfr:Rfer_0381 hypothetical protein YP_004515178.1 KEGG: mrd:Mrad2831_3420 hypothetical protein YP_004515180.1 KEGG: avn:Avin_07130 glucan 1,3-beta-glucosidase YP_004515181.1 PFAM: ABC transporter, N-terminal; ABC transporter-like; KEGG: ABC transporter domain-containing protein YP_004515182.1 TIGRFAM: Transcription termination factor Rho; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; Rho termination factor, RNA-binding; Rho termination factor, N-terminal; KEGG: mca:MCA0056 transcription termination factor Rho; SMART: Cold shock protein; ATPase, AAA+ type, core YP_004515183.1 KEGG: mca:MCA0057 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain YP_004515184.1 manually curated; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; KEGG: tgr:Tgr7_0356 DEAD/DEAH box helicase domain-containing protein; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004515185.1 KEGG: mca:MCA2982 HAD superfamily hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_004515186.1 PFAM: NUDIX hydrolase domain; KEGG: fbl:Fbal_0225 NUDIX hydrolase YP_004515187.1 KEGG: vcj:VCD_001934 N-acetyl-anhydromuranmyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: N-acetylmuramoyl-L-alanine amidase, family 2 YP_004515188.1 TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; KEGG: mca:MCA3101 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_004515189.1 KEGG: maq:Maqu_4168 hypothetical protein YP_004515190.1 KEGG: hch:HCH_04994 peroxiredoxin; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin, C-terminal YP_004515191.1 PFAM: RNA-directed DNA polymerase (reverse transcriptase); Group II intron, maturase-specific; KEGG: aca:ACP_3214 group II intron-encoded maturase YP_004515192.1 KEGG: avn:Avin_37630 hypothetical protein YP_004515193.1 PFAM: BRO, N-terminal; KEGG: hel:HELO_2103 prophage antirepressor YP_004515195.1 PFAM: BRO, N-terminal; KEGG: hel:HELO_2103 prophage antirepressor YP_004515196.1 KEGG: nmu:Nmul_A2182 phage transcriptional regulator, AlpA; manually curated; PFAM: Prophage CP4-57 regulatory YP_004515201.1 KEGG: ajs:Ajs_0939 hypothetical protein YP_004515202.1 KEGG: bcj:BCAM1062 hypothetical protein YP_004515203.1 KEGG: ajs:Ajs_0932 XRE family transcriptional regulator YP_004515204.1 KEGG: ajs:Ajs_0932 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004515205.1 KEGG: ajs:Ajs_0937 hypothetical protein YP_004515206.1 KEGG: abn:AB57_1255 hypothetical protein YP_004515209.1 KEGG: rso:RSc2476 hypothetical protein YP_004515210.1 KEGG: hoh:Hoch_1218 type III restriction protein res subunit; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; ATPase, AAA+ type, core YP_004515211.1 KEGG: bte:BTH_I3137 hypothetical protein YP_004515213.1 PFAM: Prophage CP4-57 regulatory; KEGG: gca:Galf_0723 prophage CP4-57 regulatory YP_004515215.1 PFAM: Integrase, catalytic core, phage; KEGG: nmu:Nmul_A0064 phage integrase YP_004515216.1 KEGG: nhl:Nhal_0748 YicC domain protein; TIGRFAM: Conserved hypothetical protein CHP00255; PFAM: Domain of unknown function DUF1732; YicC-like, N-terminal YP_004515217.1 KEGG: alv:Alvin_2985 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, subgroup, catalytic domain YP_004515218.1 PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; TIGRFAM: Ribonuclease phosphorolytic, bacterial-type; HAMAP: Ribonuclease phosphorolytic, bacterial-type; KEGG: mca:MCA3024 ribonuclease PH YP_004515219.1 PFAM: Ham1-like protein; TIGRFAM: Ham1-like protein; HAMAP: Nucleoside-triphosphatase rdgB; KEGG: alv:Alvin_2897 non-canonical purine NTP pyrophosphatase YP_004515220.1 PFAM: Aminoglycoside phosphotransferase; KEGG: npu:Npun_R1422 aminoglycoside phosphotransferase YP_004515221.1 TIGRFAM: Glucokinase; KEGG: mca:MCA0561 glucokinase; PFAM: Glucokinase YP_004515222.1 PFAM: Phosphorylase kinase alphabeta; KEGG: ava:Ava_0370 phosphorylase kinase alphabeta YP_004515223.1 manually curated; KEGG: tgr:Tgr7_2620 dCTP deaminase; TIGRFAM: Deoxycytidine triphosphate deaminase; HAMAP: Deoxycytidine triphosphate deaminase YP_004515224.1 KEGG: slt:Slit_2157 hypothetical protein YP_004515225.1 KEGG: mxa:MXAN_3732 hypothetical protein YP_004515227.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: nmu:Nmul_A1967 TetR family transcriptional regulator YP_004515229.1 KEGG: kko:Kkor_1884 hypothetical protein YP_004515230.1 KEGG: mca:MCA0317 selenium-binding protein YP_004515231.1 KEGG: nhl:Nhal_3354 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004515232.1 PFAM: ABC transporter-like; KEGG: pin:Ping_3710 ABC transporter foramino acid ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004515235.1 PFAM: Permease YjgP/YjgQ, predicted; KEGG: mca:MCA2101 hypothetical protein YP_004515236.1 PFAM: Permease YjgP/YjgQ, predicted; KEGG: mca:MCA2100 hypothetical protein YP_004515238.1 PFAM: Polyprenyl synthetase; KEGG: nth:Nther_1254 polyprenyl synthetase YP_004515239.1 PFAM: Methyltransferase type 11; KEGG: mca:MCA0083 UbiE/COQ5 family methlytransferase YP_004515240.1 PFAM: Methyltransferase type 11; KEGG: mca:MCA0083 UbiE/COQ5 family methlytransferase YP_004515241.1 KEGG: mca:MCA2812 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004515242.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: mca:MCA2813 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_004515243.1 KEGG: cni:Calni_0504 hypothetical protein YP_004515244.1 KEGG: cni:Calni_0505 cyclic nucleotide-binding protein; PFAM: Forkhead-associated; Patched; Cyclic nucleotide-binding; SMART: Forkhead-associated; Cyclic nucleotide-binding YP_004515245.1 KEGG: cni:Calni_0506 hypothetical protein YP_004515246.1 HAMAP: cytosol aminopeptidase; KEGG: mca:MCA2099 aminopeptidase A/I; PFAM: Peptidase M17, leucyl aminopeptidase, C-terminal; Peptidase M17, leucyl aminopeptidase, N-terminal YP_004515247.1 KEGG: nde:NIDE0067 hypothetical protein YP_004515248.1 PFAM: DNA polymerase III chi subunit, HolC; KEGG: nhl:Nhal_3009 DNA polymerase III chi subunit HolC YP_004515249.1 PFAM: Protein of unknown function DUF457, transmembrane; KEGG: nhl:Nhal_1375 hypothetical protein YP_004515250.1 KEGG: mmb:Mmol_2054 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region YP_004515251.1 KEGG: vpa:VPA0752 glutathione S-transfersae-related protein YP_004515253.1 KEGG: lbf:LBF_2415 poly(3-hydroxybutyrate) depolymerase YP_004515255.1 PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic region; Alpha-amylase, C-terminal all beta; KEGG: met:M446_1127 glycoside hydrolase 13 protein; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region YP_004515256.1 PFAM: PEP-CTERM bacterial YP_004515258.1 PFAM: Cell wall assembly/cell proliferation coordinating protein, KNR4-like; KEGG: sml:Smlt1456 hypothetical protein YP_004515259.1 KEGG: amr:AM1_1201 hypothetical protein YP_004515261.1 KEGG: mba:Mbar_A3399 hypothetical protein; TIGRFAM: RHS repeat-associated core domain; YD repeat; PFAM: Transglutaminase-like; YD repeat YP_004515262.1 PFAM: Ig; KEGG: gur:Gura_3989 hypothetical protein YP_004515263.1 KEGG: dac:Daci_1177 hypothetical protein YP_004515265.1 PFAM: Zinc/iron permease; KEGG: mei:Msip34_1703 zinc/iron permease YP_004515266.1 KEGG: mca:MCA0973 hypothetical protein; TIGRFAM: Multi-copper polyphenol oxidoreductase, laccase; PFAM: Multi-copper polyphenol oxidoreductase, laccase YP_004515267.1 TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: mca:MCA0972 ribosomal large subunit pseudouridine synthase D; SMART: RNA-binding S4 YP_004515268.1 TIGRFAM: Outer membrane assembly lipoprotein YfiO; KEGG: mca:MCA0971 competence lipoprotein ComL YP_004515270.1 PFAM: Protein of unknown function DUF820; KEGG: tmz:Tmz1t_3766 protein of unknown function DUF820 YP_004515271.1 PFAM: Protein of unknown function DUF2058; KEGG: hch:HCH_01554 hypothetical protein YP_004515272.1 PFAM: Thymidylate synthase, C-terminal; TIGRFAM: Thymidylate synthase, C-terminal; HAMAP: Thymidylate synthase; KEGG: asa:ASA_0676 thymidylate synthase YP_004515273.1 TIGRFAM: PAS; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor region; GAF; PAS fold; ATP-binding region, ATPase-like; KEGG: cvi:CV_3259 sensory transduction histidine kinase; SMART: ATP-binding region, ATPase-like; GAF; PAS; PAC motif YP_004515274.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; PAS fold-4; KEGG: npu:Npun_F3678 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; PAS; PAC motif YP_004515275.1 SMART: Ankyrin repeat; KEGG: slt:Slit_1312 ankyrin YP_004515276.1 SMART: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; TIGRFAM: Endonuclease III/Nth; KEGG: mca:MCA2899 endonuclease III; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif YP_004515277.1 KEGG: sse:Ssed_2858 hypothetical protein YP_004515278.1 KEGG: mca:MCA3108 hypothetical protein; HAMAP: UPF0276 protein; PFAM: Protein of unknown function DUF692 YP_004515279.1 PFAM: Protein of unknown function DUF2063; KEGG: mca:MCA3109 hypothetical protein YP_004515280.1 KEGG: bbe:BBR47_55640 hypothetical protein YP_004515281.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rhi:NGR_c14120 lactoylglutathione lyase YP_004515282.1 TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM; HemN, C-terminal; KEGG: mca:MCA3079 oxygen-independent coproporphyrinogen III oxidase, SMART: Elongator protein 3/MiaB/NifB YP_004515283.1 PFAM: Phosphoribosyltransferase; TIGRFAM: Orotate phosphoribosyl transferase; HAMAP: Orotate phosphoribosyltransferase; KEGG: ctu:Ctu_41470 orotate phosphoribosyltransferase YP_004515284.1 KEGG: mei:Msip34_1996 hypothetical protein YP_004515285.1 PFAM: S-adenosylmethionine decarboxylase, bacterial/archaeal; TIGRFAM: S-adenosylmethionine decarboxylase, bacterial; HAMAP: S-adenosylmethionine decarboxylase proenzyme; KEGG: mca:MCA1749 S-adenosylmethionine decarboxylase YP_004515286.1 PFAM: Peroxiredoxin, OsmC-like protein; KEGG: ttu:TERTU_3124 OsmC family protein YP_004515287.1 KEGG: nhl:Nhal_0863 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding YP_004515288.1 KEGG: rpf:Rpic12D_1388 major facilitator superfamily MFS_1; manually curated; PFAM: Major facilitator superfamily MFS-1 YP_004515289.1 PFAM: Peptidase M23; KEGG: pca:Pcar_1475 metalloendopeptidase-like membrane protein YP_004515290.1 KEGG: maq:Maqu_3821 hypothetical protein YP_004515291.1 KEGG: hypothetical protein; HAMAP: UPF0061 protein ydiU; PFAM: Uncharacterised protein family UPF0061 YP_004515292.1 KEGG: rpf:Rpic12D_1619 pyruvate dehydrogenase subunit E1; TIGRFAM: 2-oxo-acid dehydrogenase E1 component homodimeric type YP_004515293.1 KEGG: aeh:Mlg_0270 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding YP_004515294.1 KEGG: geo:Geob_3291 nucleotidyltransferase substrate binding protein, HI0074 family; TIGRFAM: Nucleotidyltransferase substrate binding protein, HI0074; PFAM: Nucleotidyltransferase substrate binding protein, HI0074 YP_004515295.1 PFAM: Nucleotidyltransferase; KEGG: gur:Gura_1133 DNA polymerase beta subunit YP_004515296.1 TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: mca:MCA3002 pyruvate dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004515298.1 KEGG: efe:EFER_1271 hypothetical protein YP_004515299.1 KEGG: efe:EFER_1270 hypothetical protein, exported membran protein, cation/multidrug efflux pump YP_004515300.1 PFAM: Glutathione S-transferase, N-terminal; KEGG: mca:MCA1002 glutathione S-transferase domain-containing protein YP_004515301.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: mfa:Mfla_0472 TetR family transcriptional regulator YP_004515302.1 KEGG: pct:PC1_3510 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0047; PFAM: Uncharacterised protein family UPF0047 YP_004515303.1 PFAM: Protein of unknown function DUF411; KEGG: nhl:Nhal_2564 protein of unknown function DUF411 YP_004515304.1 PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal; TIGRFAM: Anthranilate phosphoribosyl transferase; HAMAP: Anthranilate phosphoribosyl transferase; KEGG: nhl:Nhal_0682 anthranilate phosphoribosyltransferase YP_004515305.1 KEGG: mca:MCA2587 indole-3-glycerol phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase YP_004515306.1 KEGG: azl:AZL_a06430 protein phosphatase; PFAM: Protein phosphatase 2C, N-terminal; SMART: Protein phosphatase 2C-related YP_004515307.1 KEGG: nde:NIDE1528 hypothetical protein; PFAM: Forkhead-associated; SMART: Forkhead-associated YP_004515308.1 PFAM: Aldose 1-epimerase; KEGG: amr:AM1_5101 aldose 1-epimerase YP_004515309.1 KEGG: aba:Acid345_3226 hypothetical protein YP_004515313.1 PFAM: PEP-CTERM bacterial; Peptidase, C-terminal, archaeal/bacterial YP_004515314.1 KEGG: hau:Haur_5273 hypothetical protein YP_004515315.1 KEGG: geo:Geob_2866 hypothetical protein YP_004515316.1 PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: sbp:Sbal223_0390 restriction modification system DNA specificity domain protein YP_004515317.1 PFAM: DNA methylase, adenine-specific; KEGG: geo:Geob_2868 N-6 DNA methylase YP_004515318.1 PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; DNA/RNA helicase, C-terminal; KEGG: geo:Geob_2869 type III restriction protein res subunit; SMART: DEAD-like helicase, N-terminal YP_004515319.1 manually curated; KEGG: hmo:HM1_1450 5,10-methylenetetrahydrofolate reductase YP_004515320.1 KEGG: app:CAP2UW1_4519 phage DNA methylase YP_004515321.1 KEGG: app:CAP2UW1_4518 hypothetical protein YP_004515322.1 KEGG: app:CAP2UW1_4517 hypothetical protein YP_004515323.1 PFAM: Queuosine synthesis-like; KEGG: app:CAP2UW1_4516 ExsB family protein YP_004515324.1 PFAM: Nucleoside 2-deoxyribosyltransferase; Carbohydrate/purine kinase; KEGG: nucleoside 2-deoxyribosyltransferase YP_004515325.1 manually curated; KEGG: app:CAP2UW1_4510 hypothetical protein YP_004515326.1 KEGG: rpi:Rpic_2614 hypothetical protein YP_004515328.1 KEGG: tmz:Tmz1t_2134 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004515329.1 KEGG: bhy:BHWA1_01953 hypothetical protein YP_004515330.1 KEGG: 5,10-methylenetetrahydrofolate reductase-like protein YP_004515331.1 KEGG: sbl:Sbal_4356 hypothetical protein YP_004515332.1 KEGG: sbl:Sbal_4357 transposition protein YP_004515333.1 KEGG: sbl:Sbal_4358 transposon Tn7 transposition protein TnsC YP_004515334.1 KEGG: nca:Noca_1093 hypothetical protein YP_004515336.1 KEGG: mta:Moth_2233 hypothetical protein YP_004515337.1 KEGG: hne:HNE_2537 hypothetical protein YP_004515338.1 PFAM: Queuosine synthesis-like; KEGG: hne:HNE_2538 hypothetical protein YP_004515339.1 PFAM: Integrase, catalytic core; KEGG: sbl:Sbal_4359 integrase catalytic subunit YP_004515340.1 PFAM: TnsA endonuclease, N-terminal; TnsA endonuclease C-terminal; KEGG: sbl:Sbal_4360 transposon Tn7 transposition protein TnsA YP_004515341.1 PFAM: Sugar isomerase (SIS); Glutamine amidotransferase, class-II; TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; HAMAP: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; KEGG: nhl:Nhal_3943 glucosamine/fructose-6-phosphate aminotransferase, isomerizing YP_004515342.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Bacterial transferase hexapeptide repeat; TIGRFAM: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; HAMAP: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; KEGG: mca:MCA0014 UDP-N-acetylglucosamine pyrophosphorylase YP_004515343.1 TIGRFAM: ATPase, F1 complex, delta/epsilon subunit; HAMAP: ATPase, F1 complex, delta/epsilon subunit; KEGG: nwa:Nwat_3128 ATP synthase F1 subunit epsilon; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal; ATPase, F1 complex, delta/epsilon subunit, C-terminal YP_004515344.1 TIGRFAM: ATPase, F1 complex, beta subunit; HAMAP: ATPase, F1 complex, beta subunit; KEGG: kko:Kkor_2628 ATP synthase F1, beta subunit; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal YP_004515345.1 TIGRFAM: ATPase, F1 complex, gamma subunit; HAMAP: ATP synthase gamma chain; KEGG: mca:MCA0011 ATP synthase F1, gamma subunit; PFAM: ATPase, F1 complex, gamma subunit YP_004515346.1 TIGRFAM: ATPase, F1 complex, alpha subunit; HAMAP: ATPase, F1 complex, alpha subunit; KEGG: mca:MCA0010 F0F1 ATP synthase subunit alpha; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal YP_004515347.1 TIGRFAM: ATPase, F1 complex, OSCP/delta subunit; HAMAP: ATPase, F1 complex, OSCP/delta subunit; KEGG: mca:MCA0009 ATP synthase F1, delta subunit; PFAM: ATPase, F1 complex, OSCP/delta subunit YP_004515348.1 TIGRFAM: ATPase, F0 complex, subunit B, bacterial; HAMAP: ATP synthase subunit b; KEGG: mca:MCA0008 ATP synthase F0, B subunit; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast YP_004515349.1 TIGRFAM: ATPase, F0 complex, subunit C, bacterial/chloroplast; HAMAP: ATPase, F0 complex, subunit C; KEGG: aeh:Mlg_2874 F0F1 ATP synthase subunit C; PFAM: ATPase, F0/V0 complex, subunit C YP_004515350.1 TIGRFAM: ATPase, F0 complex, subunit A; HAMAP: ATP synthase subunit a; KEGG: mca:MCA0006 F0F1 ATP synthase subunit A; PFAM: ATPase, F0 complex, subunit A YP_004515351.1 PFAM: ATPase, F0 complex, subunit I, proteobacteria-type; KEGG: aeh:Mlg_2876 ATP synthase I chain YP_004515352.1 TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: psm:PSM_A3115 partitioning protein B; SMART: ParB-like nuclease YP_004515353.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: maq:Maqu_3884 cobyrinic acid a,c-diamide synthase YP_004515354.1 TIGRFAM: rRNA small subunit methyltransferase G; HAMAP: rRNA small subunit methyltransferase G; KEGG: gca:Galf_2943 methyltransferase GidB; PFAM: rRNA small subunit methyltransferase G YP_004515355.1 TIGRFAM: Glucose-inhibited division protein A; HAMAP: Glucose-inhibited division protein A; KEGG: mca:MCA0001 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; PFAM: Glucose-inhibited division protein A-related YP_004515357.1 PFAM: GTP cyclohydrolase II; TIGRFAM: GTP cyclohydrolase II; HAMAP: GTP cyclohydrolase-2; KEGG: srm:SRM_01710 riboflavin-specific deaminase/GTP cyclohydrolase II YP_004515358.1 PFAM: Peptidase S16, lon C-terminal; KEGG: pag:PLES_49591 ATP-dependent protease YP_004515359.1 KEGG: vha:VIBHAR_p08263 hypothetical protein YP_004515360.1 KEGG: eic:NT01EI_2025 hypothetical protein YP_004515361.1 PFAM: MEKHLA; KEGG: mca:MCA0608 hypothetical protein YP_004515362.1 KEGG: hypothetical protein YP_004515364.1 KEGG: sml:Smlt3222 fumarate hydratase; TIGRFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region YP_004515365.1 PFAM: Glutaredoxin 2; KEGG: slo:Shew_1813 glutaredoxin 2 YP_004515366.1 PFAM: Uncharacterised protein family UPF0114, prokaryotic; manually curated; TIGRFAM: Uncharacterised protein family UPF0114, bacteria; KEGG: sbp:Sbal223_3668 hypothetical protein; HAMAP: Uncharacterised protein family UPF0114, gammaproteobacteria YP_004515367.1 TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; KEGG: mca:MCA1545 B12-dependent methionine synthase; PFAM: Homocysteine S-methyltransferase; Dihydropteroate synthase, DHPS; Methionine synthase, cobalamin (vitamin B12)-binding module, cap; Cobalamin (vitamin B12)-binding; Vitamin B12 dependent methionine synthase, activation region YP_004515368.1 KEGG: ilo:IL2326 hypothetical protein YP_004515371.1 KEGG: noc:Noc_2136 hypothetical protein; PFAM: thiol-disulphide oxidoreductase DCC; SMART: HTTM YP_004515375.1 KEGG: nwa:Nwat_2728 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase YP_004515376.1 KEGG: mca:MCA2051 D,D-heptose 1,7-bisphosphate phosphatase; TIGRFAM: Histidinol-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; PFAM: Haloacid dehalogenase-like hydrolase YP_004515377.1 TIGRFAM: Glycyl-tRNA synthetase, class IIc, beta subunit; HAMAP: Glycyl-tRNA synthetase beta subunit; KEGG: mca:MCA2050 glycyl-tRNA synthetase, beta subunit YP_004515378.1 KEGG: sli:Slin_1473 hypothetical protein YP_004515379.1 KEGG: sli:Slin_1472 ATPase-like protein YP_004515380.1 PFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; TIGRFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; HAMAP: Glycyl-tRNA synthetase, class IIc, alpha subunit; KEGG: mca:MCA2049 glycyl-tRNA synthetase subunit alpha YP_004515381.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: pmy:Pmen_4180 alpha/beta hydrolase fold YP_004515382.1 manually curated; PFAM: Heat shock protein DnaJ, N-terminal; Chaperone DnaJ, C-terminal; KEGG: app:CAP2UW1_1580 heat shock protein DnaJ domain protein; SMART: Heat shock protein DnaJ, N-terminal YP_004515383.1 KEGG: app:CAP2UW1_1581 transcriptional regulatory protein, MerR family YP_004515384.1 KEGG: nhl:Nhal_2293 phosphate transport system regulatory protein PhoU; TIGRFAM: PhoU; PFAM: PhoU YP_004515385.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Phosphate transport system permease 1; KEGG: psa:PST_4024 phosphate transporter ATP-binding protein; PFAM: ABC transporter-like YP_004515386.1 KEGG: nhl:Nhal_2291 phosphate ABC transporter, inner membrane subunit PstA; TIGRFAM: Phosphate transport system permease 2; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004515387.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: nhl:Nhal_2290 binding-protein-dependent transport systems inner membrane component YP_004515388.1 TIGRFAM: Phosphate binding protein; KEGG: nhl:Nhal_2289 phosphate binding protein YP_004515389.1 KEGG: mca:MCA2729 dihydrofolate reductase; PFAM: Dihydrofolate reductase region YP_004515390.1 KEGG: pjd:Pjdr2_5900 asparaginase/glutaminase; manually curated; PFAM: Asparaginase/glutaminase YP_004515391.1 KEGG: app:CAP2UW1_2163 hypothetical protein YP_004515393.1 PFAM: Transketolase, C-terminal; Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; KEGG: npu:Npun_F4396 transketolase domain-containing protein YP_004515394.1 HAMAP: Phosphoheptose isomerase; KEGG: hel:HELO_1949 phosphoheptose isomerase YP_004515395.1 TIGRFAM: Uncharacterised protein family UPF0102; HAMAP: Uncharacterised protein family UPF0102; KEGG: tgr:Tgr7_0756 hypothetical protein; PFAM: Uncharacterised protein family UPF0102 YP_004515396.1 PFAM: LppC lipoprotein; KEGG: mca:MCA0185 lipoprotein YP_004515397.1 TIGRFAM: Uncharacterised protein family UPF0011; HAMAP: Ribosomal RNA small subunit methyltransferase I; KEGG: mca:MCA0186 hypothetical protein; PFAM: Tetrapyrrole methylase YP_004515398.1 KEGG: npu:Npun_F3836 transcriptional regulator YP_004515399.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: npu:Npun_F2364 response regulator receiver modulated diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004515400.1 manually curated YP_004515401.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mba:Mbar_A0556 hypothetical protein YP_004515402.1 KEGG: dar:Daro_1526 zinc-containing alcohol dehydrogenase superfamily protein; TIGRFAM: Quinone oxidoreductase , YhdH/YhfP; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like YP_004515403.1 KEGG: cpi:Cpin_2552 hypothetical protein YP_004515404.1 PFAM: Integrase, catalytic core; KEGG: azl:AZL_b03960 transposase YP_004515405.1 KEGG: lil:LA_1701 hypothetical protein YP_004515406.1 KEGG: azo:azo2488 hypothetical protein YP_004515407.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: ttu:TERTU_1575 dinitrogenase iron-molybdenum cofactor YP_004515409.1 KEGG: azo:azo2661 hypothetical protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal YP_004515411.1 KEGG: meh:M301_2731 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Biotin/lipoyl attachment YP_004515412.1 PFAM: Acriflavin resistance protein; KEGG: mfa:Mfla_2533 acriflavin resistance protein YP_004515413.1 PFAM: Protein of unknown function DUF81; KEGG: mei:Msip34_1516 protein of unknown function DUF81 YP_004515414.1 PFAM: Regulator of K+ conductance, C-terminal; Divalent ion symporter; KEGG: ttu:TERTU_0455 TrkA-C domain protein YP_004515415.1 KEGG: tkm:TK90_0204 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal YP_004515416.1 KEGG: mca:MCA2851 rhodanese domain-containing protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_004515417.1 PFAM: Methyltransferase type 12; KEGG: tgr:Tgr7_0203 tellurite resistance methyltransferase, TehB, core YP_004515418.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: mca:MCA2456 LysR family transcriptional regulator YP_004515420.1 TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase; HAMAP: Phosphoribosyl-ATP pyrophosphatase; KEGG: mca:MCA2800 phosphoribosyl-ATP pyrophosphatase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase YP_004515421.1 TIGRFAM: Twin-arginine translocation protein TatA/E; HAMAP: Twin-arginine translocation protein TatA/E; KEGG: abo:ABO_2250 sec-independent protein translocase TatA/E homolog; PFAM: Bacterial sec-independent translocation protein mttA/Hcf106 YP_004515422.1 TIGRFAM: Twin-arginine translocation protein TatB; HAMAP: Twin-arginine translocation protein TatB; KEGG: alv:Alvin_2527 twin-arginine translocation protein, TatB subunit; PFAM: Bacterial sec-independent translocation protein mttA/Hcf106 YP_004515423.1 KEGG: mca:MCA1486 sec-independent protein translocase TatC; TIGRFAM: Twin arginine-targeting protein translocase, TatC; PFAM: Sec-independent periplasmic protein translocase YP_004515424.1 KEGG: pen:PSEEN0318 hypothetical protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: Alanine racemase, N-terminal YP_004515425.1 TIGRFAM: Arginyl-tRNA synthetase, class Ic; HAMAP: Arginyl-tRNA synthetase, class Ic; KEGG: mca:MCA3089 arginyl-tRNA synthetase YP_004515426.1 PFAM: Sporulation/cell division region, bacteria; KEGG: mca:MCA3090 hypothetical protein YP_004515427.1 KEGG: multi-sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; Signal transduction response regulator, receiver region YP_004515428.1 KEGG: rmr:Rmar_2315 transmembrane protein YP_004515429.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: gme:Gmet_1669 TonB-dependent receptor, plug YP_004515430.1 KEGG: slt:Slit_2244 HI0933 family protein; TIGRFAM: uncharacterized flavoprotein, PP_4765 family; HI0933-like protein; PFAM: HI0933-like protein YP_004515431.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: xcb:XC_0670 cytosine deaminase YP_004515432.1 TIGRFAM: Glutamine amidotransferase of anthranilate synthase; KEGG: mca:MCA2585 anthranilate synthase component II; PFAM: Glutamine amidotransferase class-I, C-terminal YP_004515433.1 TIGRFAM: Anthranilate synthase component I; KEGG: mca:MCA2584 anthranilate synthase component I; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal YP_004515434.1 KEGG: pla:Plav_1540 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; PFAM: Fumarylacetoacetase, C-terminal-like YP_004515435.1 KEGG: stp:Strop_3603 hypothetical protein YP_004515436.1 KEGG: mep:MPQ_0973 potassium transporter; HAMAP: Low affinity potassium transport system protein kup; PFAM: K+ potassium transporter YP_004515437.1 KEGG: mca:MCA0441 TonB domain-containing protein; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein YP_004515438.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: mep:MPQ_0123 MotA/TolQ/ExbB proton channel YP_004515439.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mca:MCA0670 biopolymer ExbD/TolR family transporter YP_004515440.1 TIGRFAM: S6 modification enzyme RimK; HAMAP: Ribosomal protein S6 modification protein; KEGG: alv:Alvin_1979 alpha-L-glutamate ligase; PFAM: ATP-grasp fold, RimK-type YP_004515441.1 PFAM: Haloacid dehalogenase-like hydrolase; TIGRFAM: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 1; HAMAP: Enolase-phosphatase E1; KEGG: tgr:Tgr7_2625 2,3-diketo-5-methylthio-1-phosphopentane phosphatase YP_004515442.1 HAMAP: Acireductone dioxygenase; KEGG: nwa:Nwat_0695 acireductone dioxygenase; PFAM: Acireductone dioxygenase, ARD YP_004515443.1 PFAM: Class II aldolase/adducin, N-terminal; TIGRFAM: Methylthioribulose-1-phosphate dehydratase; HAMAP: Methylthioribulose-1-phosphate dehydratase; KEGG: mca:MCA0799 methylthioribulose-1-phosphate dehydratase YP_004515444.1 KEGG: bbe:BBR47_41610 acetoin utilization protein AcuB; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core YP_004515445.1 PFAM: Aldehyde dehydrogenase; TIGRFAM: Gamma-glutamyl phosphate reductase GPR; HAMAP: Glutamate-5-semialdehyde dehydrogenase; KEGG: maq:Maqu_2417 gamma-glutamyl phosphate reductase YP_004515446.1 PFAM: GTP-binding protein, HSR1-related; KEGG: gpb:HDN1F_16900 hypothetical protein YP_004515447.1 KEGG: hypothetical protein YP_004515448.1 PFAM: RmuC; KEGG: maq:Maqu_2040 hypothetical protein YP_004515449.1 PFAM: Aminotransferase class-III; TIGRFAM: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; HAMAP: Glutamate-1-semialdehyde 2,1-aminomutase; KEGG: tcx:Tcr_1570 glutamate-1-semialdehyde-2,1-aminomutase YP_004515451.1 KEGG: pmy:Pmen_4388 guanylate kinase; PFAM: Guanylate kinase; TIGRFAM: Guanylate kinase, sub-group; HAMAP: Guanylate kinase, sub-group; SMART: Guanylate kinase/L-type calcium channel region