-- dump date   	20120504_152747
-- class       	Genbank::Feature
-- table       	feature
-- table       	main
-- field 1	id
-- field 2	type
-- field 3	name
-- field 4	contig
-- field 5	start_pos
-- field 6	end_pos
-- field 7	strand
-- field 8	description
-- field 9	chrom_position
-- field 10	organism
-- field 11	GeneID
-- header
-- id	type	name	contig	start_pos	end_pos	strand	description	chrom_position	organism	GeneID
717522000001	SEQ_END	SEQ_END	NC_016804.1	4350386	4350386	DR	NC_016804.1; contig end	4350386..4350386	Mycobacterium bovis BCG str. Mexico	<NULL_VALUE>
YP_005169477.1	CDS	dnaA	NC_016804.1	1	1524	D	Differs from Rv0001 by 1aa, R156N ,and from Mb0001 by 1aa, V353I en BCG Pasteur, BCG Tokyo y BCG Mexico; chromosomal replication initiator protein DnaA	1..1524	Mycobacterium bovis BCG str. Mexico	11811400
YP_005169478.1	CDS	dnaN	NC_016804.1	2052	3260	D	DNA polymerase III subunit beta	2052..3260	Mycobacterium bovis BCG str. Mexico	11811433
YP_005169479.1	CDS	recF	NC_016804.1	3280	4437	D	Differs from Rv0003 by 2aa, V158L, T245I in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur,BCG Tokyo and BCG Mexico; DNA recombination and repair protein RecF	3280..4437	Mycobacterium bovis BCG str. Mexico	11811525
YP_005169480.1	CDS	BCGMEX_0004	NC_016804.1	4434	4997	D	Differs from Mb0004 by 1aa, S16L in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	4434..4997	Mycobacterium bovis BCG str. Mexico	11812016
YP_005169481.1	CDS	gyrB	NC_016804.1	5123	7267	D	Differs from Rv0005 by 1aa, S442A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; DNA gyrase subunit B	5123..7267	Mycobacterium bovis BCG str. Mexico	11812062
YP_005169482.1	CDS	gyrA	NC_016804.1	7302	9818	D	Differs from Mb0006 by 1aa, D639A, and from Rv0006 by 3aa, Q21E, T95S, D668G in Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; DNA gyrase subunit A	7302..9818	Mycobacterium bovis BCG str. Mexico	11812104
YP_005169483.1	CDS	BCGMEX_0007	NC_016804.1	9914	10828	D	Differs from Mb0007 by 1aa, I272V in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	9914..10828	Mycobacterium bovis BCG str. Mexico	11812134
YP_005169484.1	CDS	BCGMEX_0008c	NC_016804.1	11874	12311	R	Differs from Rv0008c by 1aa, P145S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(11874..12311)	Mycobacterium bovis BCG str. Mexico	11808271
YP_005169485.1	CDS	ppiA	NC_016804.1	12468	13016	D	peptidyl-prolyl cis-trans isomerase	12468..13016	Mycobacterium bovis BCG str. Mexico	11808272
YP_005169486.1	CDS	BCGMEX_0010c	NC_016804.1	13222	13557	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a single base deletion (g-*) leads to a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (111 aa versus 141 aa); hypothetical protein	complement(13222..13557)	Mycobacterium bovis BCG str. Mexico	11808273
YP_005169487.1	CDS	BCGMEX_0011c	NC_016804.1	13713	13994	R	hypothetical protein	complement(13713..13994)	Mycobacterium bovis BCG str. Mexico	11808274
YP_005169488.1	CDS	BCGMEX_0012	NC_016804.1	14088	14876	D	Differs from Rv0012 by 2aa, E105K, R233C in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	14088..14876	Mycobacterium bovis BCG str. Mexico	11808275
YP_005169489.1	CDS	trpG	NC_016804.1	14913	15611	D	Differs from Rv0013 by 1aa, M68I in BCG Pasteur, BCG Tokyo and BCG Mexico; Para-aminobenzoate synthase, amidotransferase component	14913..15611	Mycobacterium bovis BCG str. Mexico	11808276
YP_005169490.1	CDS	pknB	NC_016804.1	15589	17469	R	Transmembrane serine/threonine-protein kinase B	complement(15589..17469)	Mycobacterium bovis BCG str. Mexico	11808277
YP_005169491.1	CDS	pknA	NC_016804.1	17466	18761	R	Serine/threonine protein kinase	complement(17466..18761)	Mycobacterium bovis BCG str. Mexico	11808278
YP_005169492.1	CDS	pbpA	NC_016804.1	18758	20233	R	penicillin-binding protein A	complement(18758..20233)	Mycobacterium bovis BCG str. Mexico	11808279
YP_005169493.1	CDS	rodA	NC_016804.1	20230	21639	R	cell division protein FtsW	complement(20230..21639)	Mycobacterium bovis BCG str. Mexico	11808280
YP_005169494.1	CDS	ppp	NC_016804.1	21636	23180	R	Differs from Rv0018c by 3aa, L3R, A455S, S463P in Mcobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative protein phosphatase	complement(21636..23180)	Mycobacterium bovis BCG str. Mexico	11808281
YP_005169495.1	CDS	BCGMEX_0019c	NC_016804.1	23269	23736	R	FHA-domain-containing protein	complement(23269..23736)	Mycobacterium bovis BCG str. Mexico	11808282
YP_005169496.1	CDS	BCGMEX_0020c	NC_016804.1	23860	25425	R	Differs from Mb0020c by 2aa, G47R, Y250H, and from Rv0020c by 3aa, G222D, C298Y, Q378R, and deletion of 6aa (EQRGYP) at position 246 in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(23860..25425)	Mycobacterium bovis BCG str. Mexico	11808283
YP_005169497.1	CDS	BCGMEX_0021c	NC_016804.1	25894	26862	R	Differs from Rv0021c by 1aa, P277A in Mcobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(25894..26862)	Mycobacterium bovis BCG str. Mexico	11808285
YP_005169498.1	CDS	whiB5	NC_016804.1	27004	27423	R	putative transcriptional regulatory protein whiB-like protein	complement(27004..27423)	Mycobacterium bovis BCG str. Mexico	11808286
YP_005169499.1	CDS	BCGMEX_0023	NC_016804.1	27576	28346	D	transcriptional regulator	27576..28346	Mycobacterium bovis BCG str. Mexico	11808287
YP_005169500.1	CDS	BCGMEX_0024	NC_016804.1	28343	29176	D	In Mycobacterium tuberculosis strain H37Rv, and other mycobacteria, Rv0024 exists as a single gene. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium bovis, a frameshift due to a single base deletion (C-*) splits Rv0024 into 2 parts; putative secreted protein P60-related protein	28343..29176	Mycobacterium bovis BCG str. Mexico	11808288
YP_005169501.1	CDS	BCGMEX_0026	NC_016804.1	29225	29587	D	Differs from Rv0025 by 1aa, L73P in Mcobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	29225..29587	Mycobacterium bovis BCG str. Mexico	11808290
YP_005169502.1	CDS	BCGMEX_0027	NC_016804.1	29702	31135	D	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 4 bp insertion (*-ATCG) leads to a longer protein with a different COOH part compared to its homolog in Mycobacterium tuberculosis strain H37Rv (477 aa versus 448 aa). Differs from Rv0026 by 1aa, P93Q in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	29702..31135	Mycobacterium bovis BCG str. Mexico	11808291
YP_005169503.1	CDS	BCGMEX_0028	NC_016804.1	31173	31490	D	hypothetical protein	31173..31490	Mycobacterium bovis BCG str. Mexico	11808292
YP_005169504.1	CDS	BCGMEX_0029	NC_016804.1	31498	31803	D	hypothetical protein	31498..31803	Mycobacterium bovis BCG str. Mexico	11808293
YP_005169505.1	CDS	BCGMEX_0030	NC_016804.1	32041	33138	D	Differs from Rv0029 by 1aa, N190H in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	32041..33138	Mycobacterium bovis BCG str. Mexico	11808294
YP_005169506.1	CDS	BCGMEX_0031	NC_016804.1	33208	33537	D	hypothetical protein	33208..33537	Mycobacterium bovis BCG str. Mexico	11808295
YP_005169507.1	CDS	BCGMEX_0032	NC_016804.1	33566	33778	D	putative remnant of a transposase	33566..33778	Mycobacterium bovis BCG str. Mexico	11808296
YP_005169508.1	CDS	bioF2	NC_016804.1	34279	36594	D	8-amino-3-oxonanoate synthase	34279..36594	Mycobacterium bovis BCG str. Mexico	11808297
YP_005169509.1	CDS	acpA	NC_016804.1	36591	36854	D	acyl carrier protein	36591..36854	Mycobacterium bovis BCG str. Mexico	11808298
YP_005169510.1	CDS	BCGMEX_0035	NC_016804.1	36851	37246	D	hypothetical protein	36851..37246	Mycobacterium bovis BCG str. Mexico	11808299
YP_005169511.1	CDS	fadD34	NC_016804.1	37243	38931	D	putative fatty-acid-CoA ligase	37243..38931	Mycobacterium bovis BCG str. Mexico	11808300
YP_005169512.1	CDS	BCGMEX_0037c	NC_016804.1	39132	39812	R	Differs from Mb0037c and Rv0036c by 1aa in BCG Pasteur, BCG Tokyo and BCG Mexico, L186P in BCG Pasteur, and at C-terminal end due to frameshift resulting from 1 bp deletion at position Equivalent to Mycobacterium tuberculosis H37Rv, after codon 202 in BCG Pasteur, Tokyo and Mexico; hypothetical protein	complement(39132..39812)	Mycobacterium bovis BCG str. Mexico	11808301
YP_005169513.1	CDS	BCGMEX_0038c	NC_016804.1	39860	41185	R	putative integral membrane protein	complement(39860..41185)	Mycobacterium bovis BCG str. Mexico	11808302
YP_005169514.1	CDS	BCGMEX_0039	NC_016804.1	41287	41895	D	hypothetical protein	41287..41895	Mycobacterium bovis BCG str. Mexico	11808303
YP_005169515.1	CDS	BCGMEX_0040c	NC_016804.1	41987	42334	R	Differs from Rv0039c by 1aa, F24C in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	complement(41987..42334)	Mycobacterium bovis BCG str. Mexico	11808304
YP_005169516.1	CDS	mtc28	NC_016804.1	42416	43348	R	proline-rich 28 kDa antigen	complement(42416..43348)	Mycobacterium bovis BCG str. Mexico	11808305
YP_005169517.1	CDS	leuS	NC_016804.1	43545	46454	D	leucyl-tRNA synthetase	43545..46454	Mycobacterium bovis BCG str. Mexico	11808306
YP_005169518.1	CDS	BCGMEX_0043c	NC_016804.1	46564	47190	R	putative transcriptional regulatory protein, MarR family	complement(46564..47190)	Mycobacterium bovis BCG str. Mexico	11808307
YP_005169519.1	CDS	BCGMEX_0044c	NC_016804.1	47349	48083	R	putative transcriptional regulatory protein, GntR family	complement(47349..48083)	Mycobacterium bovis BCG str. Mexico	11808308
YP_005169520.1	CDS	BCGMEX_0045c	NC_016804.1	48216	49010	R	putative oxidoreductase	complement(48216..49010)	Mycobacterium bovis BCG str. Mexico	11808309
YP_005169521.1	CDS	BCGMEX_0046c	NC_016804.1	49026	49922	R	putative hydrolase	complement(49026..49922)	Mycobacterium bovis BCG str. Mexico	11808310
YP_005169522.1	CDS	BCGMEX_0047c	NC_016804.1	50004	51107	R	Differs from Mb0047c by 1aa, T120I, and from Rv0046c by 2aa, T120I, G190R in BCG Pasteur, BCG Tokio and BCG Mexico; inositol-1-phosphate synthase	complement(50004..51107)	Mycobacterium bovis BCG str. Mexico	11808311
YP_005169523.1	CDS	BCGMEX_0048c	NC_016804.1	51168	51710	R	hypothetical protein	complement(51168..51710)	Mycobacterium bovis BCG str. Mexico	11808312
YP_005169524.1	CDS	BCGMEX_0049c	NC_016804.1	51811	52680	R	Differs from Rv0048c by 1aa, A250V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(51811..52680)	Mycobacterium bovis BCG str. Mexico	11808313
YP_005169525.1	CDS	BCGMEX_0050	NC_016804.1	52814	53227	D	hypothetical protein	52814..53227	Mycobacterium bovis BCG str. Mexico	11808314
YP_005169526.1	CDS	ponA1	NC_016804.1	53646	55691	D	In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, insertion of 3 codons after position 632 leads to a slightly longer product compared to its homologs in Mycobacterium tuberculosis strain H37Rv (681 aa versus 678 aa) and Mycobacterium bovis AF2122/97 (681 aa versus 680 aa). In addition, differs from Rv0050 by 1aa, L6P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative bifunctional penicillin-binding protein 1A/1B	53646..55691	Mycobacterium bovis BCG str. Mexico	11808315
YP_005169527.1	CDS	BCGMEX_0052	NC_016804.1	55688	57370	D	transmembrane protein	55688..57370	Mycobacterium bovis BCG str. Mexico	11808316
YP_005169528.1	CDS	BCGMEX_0053	NC_016804.1	57402	57965	D	hypothetical protein	57402..57965	Mycobacterium bovis BCG str. Mexico	11808317
YP_005169529.1	CDS	rpsF	NC_016804.1	58184	58474	D	30S ribosomal protein S6	58184..58474	Mycobacterium bovis BCG str. Mexico	11808318
YP_005169530.1	CDS	ssb	NC_016804.1	58578	59072	D	ssDNA-binding protein	58578..59072	Mycobacterium bovis BCG str. Mexico	11808319
YP_005169531.1	CDS	rpsR1	NC_016804.1	59114	59368	D	30S ribosomal protein S18	59114..59368	Mycobacterium bovis BCG str. Mexico	11808320
YP_005169532.1	CDS	rplI	NC_016804.1	59401	59859	D	50S ribosomal protein L9	59401..59859	Mycobacterium bovis BCG str. Mexico	11808321
YP_005169533.1	CDS	BCGMEX_0058	NC_016804.1	59888	60409	D	hypothetical protein	59888..60409	Mycobacterium bovis BCG str. Mexico	11808322
YP_005169534.1	CDS	dnaB	NC_016804.1	60388	63012	D	Differs from Rv0058 by 1aa, G552R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Replicative DNA helicase	60388..63012	Mycobacterium bovis BCG str. Mexico	11808323
YP_005169535.1	CDS	BCGMEX_0060	NC_016804.1	63192	63884	D	hypothetical protein	63192..63884	Mycobacterium bovis BCG str. Mexico	11808324
YP_005169536.1	CDS	BCGMEX_0061	NC_016804.1	63901	64959	D	hypothetical protein	63901..64959	Mycobacterium bovis BCG str. Mexico	11808325
YP_005169537.1	CDS	BCGMEX_0062	NC_016804.1	64983	65408	D	hypothetical protein	64983..65408	Mycobacterium bovis BCG str. Mexico	11808326
YP_005169538.1	CDS	celA1	NC_016804.1	65544	66686	D	Differs from Mb0063 by 1aa, A72D, and from Rv0062 by 2aa, A72D, V106I in BCG Pasteur, BCG Tokyo and BCG Mexico; putative cellulase	65544..66686	Mycobacterium bovis BCG str. Mexico	11808327
YP_005169539.1	CDS	BCGMEX_0064	NC_016804.1	66915	68354	D	putative oxidoreductase	66915..68354	Mycobacterium bovis BCG str. Mexico	11808328
YP_005169540.1	CDS	BCGMEX_0065	NC_016804.1	68612	71551	D	Differs from Mb0065 by 1aa, T435I, and from Rv0064 by 4aa, T435I, D457G, F550V, P906R in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	68612..71551	Mycobacterium bovis BCG str. Mexico	11808329
YP_005169541.1	CDS	BCGMEX_0066	NC_016804.1	71618	71857	D	Differs from Rv0064A by 1aa, V48A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	71618..71857	Mycobacterium bovis BCG str. Mexico	11808330
YP_005169542.1	CDS	BCGMEX_0067	NC_016804.1	71850	72251	D	hypothetical protein	71850..72251	Mycobacterium bovis BCG str. Mexico	11808331
YP_005169543.1	CDS	icd2	NC_016804.1	72303	74540	R	Differs from Rv0066c by 1aa, N117K in in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur,BCG Tokyo and BCG Mexico; isocitrate dehydrogenase	complement(72303..74540)	Mycobacterium bovis BCG str. Mexico	11808332
YP_005169544.1	CDS	BCGMEX_0069c	NC_016804.1	74658	75227	R	putative transcriptional regulatory protein, TetR family	complement(74658..75227)	Mycobacterium bovis BCG str. Mexico	11808333
YP_005169545.1	CDS	BCGMEX_0070	NC_016804.1	75330	76241	D	Differs from Rv0068 by 1aa, L214V in Mycobacterium bovis, Mycobacterium tuberculosis CDC1551, BCG Pasteur,BCG Tokyo and BCG Mexico; short-chain dehydrogenase	75330..76241	Mycobacterium bovis BCG str. Mexico	11808334
YP_005169546.1	CDS	sdaA	NC_016804.1	76266	77651	R	putative L-serine dehydratase	complement(76266..77651)	Mycobacterium bovis BCG str. Mexico	11808335
YP_005169547.1	CDS	glyA2	NC_016804.1	77648	78925	R	Differs from Rv0070c by 1aa, G265E in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative serine hydroxymethyltransferase	complement(77648..78925)	Mycobacterium bovis BCG str. Mexico	11808336
YP_005169548.1	CDS	BCGMEX_0073	NC_016804.1	79515	80267	D	In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 45 bp insertion (5 copies of VDP repeat) leads to longer products compared to its homologs in Mycobacterium tuberculosis strain H37Rv (250 aa versus 235 aa) and Mycobacterium bovis (250 aa versus 238 aa); Maturase-related protein	79515..80267	Mycobacterium bovis BCG str. Mexico	11808337
YP_005169549.1	CDS	BCGMEX_0074	NC_016804.1	80698	81747	D	putative glutamine-transport transmembrane protein ABC transporter	80698..81747	Mycobacterium bovis BCG str. Mexico	11808338
YP_005169550.1	CDS	BCGMEX_0075	NC_016804.1	81750	82742	D	In Mycobacterium tuberculosis strain H37Rv, Rv0073 exists as a single gene as in Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico. In Mycobacterium bovis, a frameshift due to a single base deletion (A-*) splits Rv0073 into 2 parts, Mb0074 and Mb0075; putative glutamine-transport ATP-binding protein ABC transporter	81750..82742	Mycobacterium bovis BCG str. Mexico	11808339
YP_005169551.1	CDS	BCGMEX_0076	NC_016804.1	82822	84057	D	hypothetical protein	82822..84057	Mycobacterium bovis BCG str. Mexico	11808340
YP_005169552.1	CDS	BCGMEX_0077	NC_016804.1	84070	85242	D	Differs from Rv0075 and Mb0077 by 1aa, G326D in BCG Pasteur, BCG Tokyo and BCG Mexico; aminotransferase	84070..85242	Mycobacterium bovis BCG str. Mexico	11808341
YP_005169553.1	CDS	BCGMEX_0078c	NC_016804.1	85257	85646	R	hypothetical protein	complement(85257..85646)	Mycobacterium bovis BCG str. Mexico	11808342
YP_005169554.1	CDS	BCGMEX_0079c	NC_016804.1	85710	86540	R	putative oxidoreductase	complement(85710..86540)	Mycobacterium bovis BCG str. Mexico	11808343
YP_005169555.1	CDS	BCGMEX_0080	NC_016804.1	86602	87207	D	Differs from Rv0078 by 1aa, V113I in BCG Pasteur, BCG Tokyo and BCG Mexico; putative transcriptional regulatory protein	86602..87207	Mycobacterium bovis BCG str. Mexico	11808344
YP_005169556.1	CDS	BCGMEX_0081c	NC_016804.1	87282	87875	R	hypothetical protein	complement(87282..87875)	Mycobacterium bovis BCG str. Mexico	11808345
YP_005169557.1	CDS	BCGMEX_0082c	NC_016804.1	87872	88084	R	hypothetical protein	complement(87872..88084)	Mycobacterium bovis BCG str. Mexico	11808346
YP_005169558.1	CDS	BCGMEX_0083	NC_016804.1	88278	89099	D	hypothetical protein	88278..89099	Mycobacterium bovis BCG str. Mexico	11808347
YP_005169559.1	CDS	BCGMEX_0084	NC_016804.1	89096	89554	D	Differs from Mb0083 by 1aa, C35R, and from Rv0080 by 2aa, C35R, V60G in BCG Pasteur and BCG Mexico. Differs from Rv0080 by 1aa, V60G in BCG Tokyo; hypothetical protein	89096..89554	Mycobacterium bovis BCG str. Mexico	11808348
YP_005169560.1	CDS	BCGMEX_0085	NC_016804.1	89649	89993	D	putative transcriptional regulatory protein, ArsR family	89649..89993	Mycobacterium bovis BCG str. Mexico	11808349
YP_005169561.1	CDS	BCGMEX_0086	NC_016804.1	89998	90477	D	Differs from Rv0082 by 1aa, R74Q in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative oxidoreductase	89998..90477	Mycobacterium bovis BCG str. Mexico	11808350
YP_005169562.1	CDS	BCGMEX_0087	NC_016804.1	90474	92402	D	In Mycobacterium bovis, a single base transversion (a-t) leads to a slightly longer product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (642 aa versus 640 aa).Differs from Mb0086 by 1aa, A177V in BCG Pasteur, BCG Tokyo and BCG Mexico; putative oxidoreductase	90474..92402	Mycobacterium bovis BCG str. Mexico	11808351
YP_005169563.1	CDS	hycD	NC_016804.1	92402	93352	D	putative formate hydrogenlyase	92402..93352	Mycobacterium bovis BCG str. Mexico	11808352
YP_005169564.1	CDS	hycP	NC_016804.1	93363	94025	D	putative hydrogenase	93363..94025	Mycobacterium bovis BCG str. Mexico	11808353
YP_005169565.1	CDS	hycQ	NC_016804.1	94025	95491	D	Differs from Rv0086 by 1aa, T118M in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative hydrogenase	94025..95491	Mycobacterium bovis BCG str. Mexico	11808354
YP_005169566.1	CDS	hycE	NC_016804.1	95488	96966	D	Differs from Rv0087 by 1aa, I230V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur,BCG Tokyo and BCG Mexico; putative formate hydrogenlyase	95488..96966	Mycobacterium bovis BCG str. Mexico	11808355
YP_005169567.1	CDS	BCGMEX_0092	NC_016804.1	97001	97675	D	hypothetical protein	97001..97675	Mycobacterium bovis BCG str. Mexico	11808356
YP_005169568.1	CDS	BCGMEX_0093	NC_016804.1	97832	98425	D	putative methyltransferasa/methylase	97832..98425	Mycobacterium bovis BCG str. Mexico	11808357
YP_005169569.1	CDS	BCGMEX_0094	NC_016804.1	98554	99324	D	hypothetical protein	98554..99324	Mycobacterium bovis BCG str. Mexico	11808358
YP_005169570.1	CDS	mtn	NC_016804.1	99758	100525	D	MTA/SAH nucleosidase	99758..100525	Mycobacterium bovis BCG str. Mexico	11808359
YP_005169571.1	CDS	ctpA	NC_016804.1	100657	102942	D	Differs from Rv0092 by 1aa, A3T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; cation-transporting P-type ATPase A	100657..102942	Mycobacterium bovis BCG str. Mexico	11808360
YP_005169572.1	CDS	BCGMEX_0097c	NC_016804.1	102889	103737	R	Differs from Rv0093c by 1aa, R22C in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(102889..103737)	Mycobacterium bovis BCG str. Mexico	11808361
YP_005169573.1	CDS	BCGMEX_0098c	NC_016804.1	103784	104737	R	Differs from Rv0094c by 3aa, D256E, W296R, K315E in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(103784..104737)	Mycobacterium bovis BCG str. Mexico	11808362
YP_005169574.1	CDS	BCGMEX_0099c	NC_016804.1	104508	105290	R	In Mycobacterium tuberculosis strain H37Rv, Rv0095c and Rv1588 exist as separate genes in their respective positions. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a 73 bp substitution leads to a single combined gene. Differs from Rv0095c by 5aa, E57D, T70S, V85A, V91G, A92Q in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(104508..105290)	Mycobacterium bovis BCG str. Mexico	11808363
YP_005169575.1	CDS	PPE1	NC_016804.1	105399	106790	D	Differs from Rv0096 by 1aa, W182R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; PPE family protein	105399..106790	Mycobacterium bovis BCG str. Mexico	11808364
YP_005169576.1	CDS	BCGMEX_0101	NC_016804.1	106809	107678	D	putative oxidoreductase	106809..107678	Mycobacterium bovis BCG str. Mexico	11808365
YP_005169577.1	CDS	BCGMEX_0102	NC_016804.1	107675	108226	D	hypothetical protein	107675..108226	Mycobacterium bovis BCG str. Mexico	11808366
YP_005169578.1	CDS	fadD10	NC_016804.1	108231	109853	D	putative fatty-acid-CoA ligase	108231..109853	Mycobacterium bovis BCG str. Mexico	11808367
YP_005169579.1	CDS	BCGMEX_0104	NC_016804.1	109858	110094	D	hypothetical protein	109858..110094	Mycobacterium bovis BCG str. Mexico	11808368
YP_005169580.1	CDS	nrp	NC_016804.1	110076	117614	D	putative peptide synthetase	110076..117614	Mycobacterium bovis BCG str. Mexico	11808369
YP_005169581.1	CDS	BCGMEX_0106	NC_016804.1	117789	119774	D	putative integral membrane protein	117789..119774	Mycobacterium bovis BCG str. Mexico	11808370
YP_005169582.1	CDS	ctpB	NC_016804.1	119990	122248	R	Differs from Rv0103c by 1aa, S22L in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; cation-transporting P-type ATPase B	complement(119990..122248)	Mycobacterium bovis BCG str. Mexico	11808371
YP_005169583.1	CDS	BCGMEX_0108	NC_016804.1	122392	123906	D	hypothetical protein	122392..123906	Mycobacterium bovis BCG str. Mexico	11808372
YP_005169584.1	CDS	rpmB1	NC_016804.1	124055	124339	R	50S ribosomal protein L28	complement(124055..124339)	Mycobacterium bovis BCG str. Mexico	11808373
YP_005169585.1	CDS	BCGMEX_0110	NC_016804.1	124449	125645	D	hypothetical protein	124449..125645	Mycobacterium bovis BCG str. Mexico	11808374
YP_005169586.1	CDS	ctpI	NC_016804.1	125740	130617	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a single base insertion (*-T) leads to a product with a different COOH part compared to its homolog in Mycobacterium tuberculosis strain H37Rv differs from Rv0107c by 3aa, V136A, P1247S, S1327A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative cation-transporter ATPase I	complement(125740..130617)	Mycobacterium bovis BCG str. Mexico	11808375
YP_005169587.1	CDS	BCGMEX_0112c	NC_016804.1	130971	131180	R	hypothetical protein	complement(130971..131180)	Mycobacterium bovis BCG str. Mexico	11808376
YP_005169588.1	CDS	PE_PGRS1	NC_016804.1	131459	132949	D	Differs from Rv0109 by 1aa, G346R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; PE-PGRS family protein	131459..132949	Mycobacterium bovis BCG str. Mexico	11808377
YP_005169589.1	CDS	BCGMEX_0114	NC_016804.1	133097	133846	D	hypothetical protein	133097..133846	Mycobacterium bovis BCG str. Mexico	11808378
YP_005169590.1	CDS	BCGMEX_0115	NC_016804.1	134027	136084	D	putative transmembrane acyltransferase	134027..136084	Mycobacterium bovis BCG str. Mexico	11808379
YP_005169591.1	CDS	gca	NC_016804.1	136366	137322	D	putative gdp-mannose 4,6-dehydratase	136366..137322	Mycobacterium bovis BCG str. Mexico	11808380
YP_005169592.1	CDS	gmhA	NC_016804.1	137396	137986	D	phosphoheptose isomerase	137396..137986	Mycobacterium bovis BCG str. Mexico	11808381
YP_005169593.1	CDS	BCGMEX_0118	NC_016804.1	138018	138590	D	Differs from Rv0114 by 1aa, R121G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative dehydratase	138018..138590	Mycobacterium bovis BCG str. Mexico	11808382
YP_005169594.1	CDS	BCGMEX_0119	NC_016804.1	138590	139657	D	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a single base insertion (*-c) leads to shorter product with a different COOH part compared to its homolog in Mycobacterium tuberculosis strain H37Rv. In addition, in Mycobacterium bovis, a single base insertion leads to a different NH2 part; putative sugar kinase	138590..139657	Mycobacterium bovis BCG str. Mexico	11808383
YP_005169595.1	CDS	BCGMEX_0120c	NC_016804.1	140345	141100	R	membrane protein	complement(140345..141100)	Mycobacterium bovis BCG str. Mexico	11808384
YP_005169596.1	CDS	oxyS	NC_016804.1	141278	142222	D	Oxidative stress response regulatory protein	141278..142222	Mycobacterium bovis BCG str. Mexico	11808385
YP_005169597.1	CDS	oxcA	NC_016804.1	142206	143954	R	Differs from Rv0118c by 1aa, G224S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative oxalyl-CoA decarboxylase	complement(142206..143954)	Mycobacterium bovis BCG str. Mexico	11808386
YP_005169598.1	CDS	fadD7	NC_016804.1	144127	145704	D	acyl-CoA synthetase	144127..145704	Mycobacterium bovis BCG str. Mexico	11808387
YP_005169599.1	CDS	fusA2b	NC_016804.1	145705	147849	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium tuberculosis strain H37Rv, fusA2 exists as a single gene. In Mycobacterium bovis, a frameshift due to a 2bp to 1bp substitution (GC-T), splits fusA2 into 2 parts, fusA2a and fusA2b. Differs from Rv0120c by 2aa, W106R, S562N; Elongation factor G-related protein	complement(145705..147849)	Mycobacterium bovis BCG str. Mexico	11808388
YP_005169600.1	CDS	BCGMEX_0125c	NC_016804.1	147985	148419	R	hypothetical protein	complement(147985..148419)	Mycobacterium bovis BCG str. Mexico	11808389
YP_005169601.1	CDS	BCGMEX_0126	NC_016804.1	148568	148936	D	hypothetical protein	148568..148936	Mycobacterium bovis BCG str. Mexico	11808390
YP_005169602.1	CDS	BCGMEX_0127	NC_016804.1	148933	149301	D	hypothetical protein	148933..149301	Mycobacterium bovis BCG str. Mexico	11808391
YP_005169603.1	CDS	PE_PGRS2	NC_016804.1	149610	151226	D	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 180 bp insertion leads to a longer product in the 3' direction compared to its homolog in Mycobacterium tuberculosis strain H37Rv (538 aa versus 487 aa); PE-PGRS family protein	149610..151226	Mycobacterium bovis BCG str. Mexico	11808392
YP_005169604.1	CDS	pepA	NC_016804.1	151378	152445	D	putative serine protease	151378..152445	Mycobacterium bovis BCG str. Mexico	11808393
YP_005169605.1	CDS	treS	NC_016804.1	152554	154359	D	Trehalose synthase	152554..154359	Mycobacterium bovis BCG str. Mexico	11808394
YP_005169606.1	CDS	BCGMEX_0131	NC_016804.1	154462	155829	D	Differs from Rv0127 by 1aa, P18S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	154462..155829	Mycobacterium bovis BCG str. Mexico	11808395
YP_005169607.1	CDS	BCGMEX_0132	NC_016804.1	155897	156676	D	transmembrane protein	155897..156676	Mycobacterium bovis BCG str. Mexico	11808396
YP_005169608.1	CDS	fbpC	NC_016804.1	156808	157830	R	antigen 85-C	complement(156808..157830)	Mycobacterium bovis BCG str. Mexico	11808397
YP_005169609.1	CDS	BCGMEX_0134	NC_016804.1	158077	158532	D	hypothetical protein	158077..158532	Mycobacterium bovis BCG str. Mexico	11808398
YP_005169610.1	CDS	fadE1	NC_016804.1	158545	159888	R	putative acyl-CoA dehydrogenase	complement(158545..159888)	Mycobacterium bovis BCG str. Mexico	11808399
YP_005169611.1	CDS	fgd2	NC_016804.1	159930	161012	R	Differs from Mb0137c by 1aa, E147K in Mycobacterium tuberculosis H37Rv, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; F420-dependent glucose-6-phosphate dehydrogenase	complement(159930..161012)	Mycobacterium bovis BCG str. Mexico	11808400
YP_005169612.1	CDS	BCGMEX_0137	NC_016804.1	161099	161581	D	In Mycobacterium tuberculosis strain H37Rv, and Mycobacterium bovis AF2122/97, codon 161 is TAC and in Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, TAA; putative acetyltransferase	161099..161581	Mycobacterium bovis BCG str. Mexico	11808401
YP_005169613.1	CDS	BCGMEX_0141c	NC_016804.1	162874	163479	R	TetR family transcriptional regulator	complement(162874..163479)	Mycobacterium bovis BCG str. Mexico	11808405
YP_005169614.1	CDS	cyp138	NC_016804.1	163596	164921	D	putative cytochrome P450 138	163596..164921	Mycobacterium bovis BCG str. Mexico	11808406
YP_005169615.1	CDS	msrA	NC_016804.1	164942	165490	R	peptide methionine sulfoxide reductase msrA	complement(164942..165490)	Mycobacterium bovis BCG str. Mexico	11808407
YP_005169616.1	CDS	BCGMEX_0144	NC_016804.1	165553	166056	D	Differs from Mb0143 by 1aa, D96G in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	165553..166056	Mycobacterium bovis BCG str. Mexico	11808408
YP_005169617.1	CDS	BCGMEX_0145	NC_016804.1	166057	167079	D	Differs from Mb0144 by 1aa, R227H in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; dihydroflavonol-4-reductase	166057..167079	Mycobacterium bovis BCG str. Mexico	11808409
YP_005169618.1	CDS	BCGMEX_0146	NC_016804.1	167140	167520	D	hypothetical protein	167140..167520	Mycobacterium bovis BCG str. Mexico	11808410
YP_005169619.1	CDS	BCGMEX_0147c	NC_016804.1	167501	167911	R	hypothetical protein	complement(167501..167911)	Mycobacterium bovis BCG str. Mexico	11808411
YP_005169620.1	CDS	BCGMEX_0148	NC_016804.1	167941	168867	D	hypothetical protein	167941..168867	Mycobacterium bovis BCG str. Mexico	11808412
YP_005169621.1	CDS	BCGMEX_0149c	NC_016804.1	168934	170412	R	Differs from Rv0143c by 1aa, L34F in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	complement(168934..170412)	Mycobacterium bovis BCG str. Mexico	11808413
YP_005169622.1	CDS	BCGMEX_0150	NC_016804.1	170514	171356	D	TetR family transcriptional regulator	170514..171356	Mycobacterium bovis BCG str. Mexico	11808414
YP_005169623.1	CDS	BCGMEX_0151	NC_016804.1	171445	172398	D	hypothetical protein	171445..172398	Mycobacterium bovis BCG str. Mexico	11808415
YP_005169624.1	CDS	BCGMEX_0152	NC_016804.1	172441	173373	D	hypothetical protein	172441..173373	Mycobacterium bovis BCG str. Mexico	11808416
YP_005169625.1	CDS	BCGMEX_0153	NC_016804.1	173468	174988	D	aldehyde dehydrogenase	173468..174988	Mycobacterium bovis BCG str. Mexico	11808417
YP_005169626.1	CDS	BCGMEX_0154	NC_016804.1	175063	175923	D	putative short-chain type dehydrogenase/reductase	175063..175923	Mycobacterium bovis BCG str. Mexico	11808418
YP_005169627.1	CDS	BCGMEX_0155	NC_016804.1	175930	176898	D	putative quinone oxidoreductase	175930..176898	Mycobacterium bovis BCG str. Mexico	11808419
YP_005169628.1	CDS	BCGMEX_0156c	NC_016804.1	176895	177182	R	hypothetical protein	complement(176895..177182)	Mycobacterium bovis BCG str. Mexico	11808420
YP_005169629.1	CDS	PE1	NC_016804.1	177773	179539	R	Differs from Rv0151c by 1aa, R26G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; PE family protein	complement(177773..179539)	Mycobacterium bovis BCG str. Mexico	11808421
YP_005169630.1	CDS	PE2	NC_016804.1	179549	181126	R	PE family protein	complement(179549..181126)	Mycobacterium bovis BCG str. Mexico	11808422
YP_005169631.1	CDS	ptbB	NC_016804.1	181385	182215	R	Differs from Rv0153c by 1aa, G105D in BCG Pasteur, BCG Tokyo and BCG Mexico; phosphotyrosine protein phosphatase	complement(181385..182215)	Mycobacterium bovis BCG str. Mexico	11808423
YP_005169632.1	CDS	fadE2	NC_016804.1	182217	183428	R	putative acyl-CoA dehydrogenase	complement(182217..183428)	Mycobacterium bovis BCG str. Mexico	11808424
YP_005169633.1	CDS	pntAa	NC_016804.1	183852	184952	D	putative NAD(P) transhydrogenase subunit alpha	183852..184952	Mycobacterium bovis BCG str. Mexico	11808425
YP_005169634.1	CDS	pntAb	NC_016804.1	184953	185285	D	Differs from Rv0156 by 1aa, C2Y in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative NAD(P) transhydrogenase subunit alpha	184953..185285	Mycobacterium bovis BCG str. Mexico	11808426
YP_005169635.1	CDS	pntB	NC_016804.1	185282	186709	D	putative NAD(P) transhydrogenase subunit beta	185282..186709	Mycobacterium bovis BCG str. Mexico	11808427
YP_005169636.1	CDS	BCGMEX_0164	NC_016804.1	187015	187659	D	TetR family transcriptional regulator	187015..187659	Mycobacterium bovis BCG str. Mexico	11808428
YP_005169637.1	CDS	PE3	NC_016804.1	187663	189069	R	Differs from Rv0159c by 1aa, T255P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; PE family protein	complement(187663..189069)	Mycobacterium bovis BCG str. Mexico	11808429
YP_005169638.1	CDS	PE4	NC_016804.1	189161	190669	R	Differs from Rv0160c by 2aa, T116A, T211A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; PE family protein	complement(189161..190669)	Mycobacterium bovis BCG str. Mexico	11808430
YP_005169639.1	CDS	BCGMEX_0167	NC_016804.1	190837	192186	D	putative oxidoreductase	190837..192186	Mycobacterium bovis BCG str. Mexico	11808431
YP_005169640.1	CDS	adhE1	NC_016804.1	192214	193365	R	Differs from Rv0162c and Mb0167c by 1aa, R41H in BCG Pasteur, BCG Tokyo and BCG Mexico; putative zinc-type alcohol dehydrogenase e subunit	complement(192214..193365)	Mycobacterium bovis BCG str. Mexico	11808432
YP_005169641.1	CDS	BCGMEX_0169	NC_016804.1	193347	193802	D	hypothetical protein	193347..193802	Mycobacterium bovis BCG str. Mexico	11808433
YP_005169642.1	CDS	BCGMEX_0170	NC_016804.1	193856	194341	D	hypothetical protein	193856..194341	Mycobacterium bovis BCG str. Mexico	11808434
YP_005169643.1	CDS	BCGMEX_0171c	NC_016804.1	194355	195170	R	In Mycobacterium tuberculosis strain H37Rv, Rv0165c exists as a single gene. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a frameshift due to a 2bp insertion (*-CC) leads to a product with a different COOH terminus; GntR family transcriptional regulator	complement(194355..195170)	Mycobacterium bovis BCG str. Mexico	11808435
YP_005169644.1	CDS	fadD5	NC_016804.1	195225	196889	D	Differs from Rv0166 by 2aa, A123V, A192S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; acyl-CoA synthetase	195225..196889	Mycobacterium bovis BCG str. Mexico	11808436
YP_005169645.1	CDS	yrbE1A	NC_016804.1	197175	197891	D	In Mycobacterium bovis BCG Mexico a single base transition (G-A) leads to a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (238 aa versus 265 aa); putative integral membrane protein	197175..197891	Mycobacterium bovis BCG str. Mexico	11808437
YP_005169646.1	CDS	yrbE1B	NC_016804.1	197893	198762	D	putative integral membrane protein	197893..198762	Mycobacterium bovis BCG str. Mexico	11808438
YP_005169647.1	CDS	mce1A	NC_016804.1	198767	200131	D	Differs from Rv0169 by 2aa, A313S, S359P. Differs from Rv0169 by 2aa, A313S, S359P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; MCE-family protein	198767..200131	Mycobacterium bovis BCG str. Mexico	11808439
YP_005169648.1	CDS	mce1B	NC_016804.1	200128	201168	D	Differs from Rv0170 by 1aa, T179I in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; MCE-family protein	200128..201168	Mycobacterium bovis BCG str. Mexico	11808440
YP_005169649.1	CDS	mce1C	NC_016804.1	201165	202712	D	Differs from Rv0171 by 1aa, D212E in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; MCE-family protein	201165..202712	Mycobacterium bovis BCG str. Mexico	11808441
YP_005169650.1	CDS	mce1D	NC_016804.1	202709	204301	D	MCE-family protein	202709..204301	Mycobacterium bovis BCG str. Mexico	11808442
YP_005169651.1	CDS	lprK	NC_016804.1	204298	205470	D	putative MCE-family lipoprotein LPRL	204298..205470	Mycobacterium bovis BCG str. Mexico	11808443
YP_005169652.1	CDS	mce1F	NC_016804.1	205464	207011	D	Differs from Rv0174 by 1aa, P370L in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and  BCG Mexico; MCE-family protein	205464..207011	Mycobacterium bovis BCG str. Mexico	11808444
YP_005169653.1	CDS	BCGMEX_0181	NC_016804.1	207047	207688	D	MCE associated membrane	207047..207688	Mycobacterium bovis BCG str. Mexico	11808445
YP_005169654.1	CDS	BCGMEX_0182	NC_016804.1	207685	208653	D	Differs from Mb0182 by 1aa, S285N, and from Rv0176 by 3aa, S285N, S290Q, A291S in BCG Pasteur, BCG Tokyo and BCG Mexico; MCE associated transmembrane protein	207685..208653	Mycobacterium bovis BCG str. Mexico	11808446
YP_005169655.1	CDS	BCGMEX_0183	NC_016804.1	208650	209204	D	MCE associated protein	208650..209204	Mycobacterium bovis BCG str. Mexico	11808447
YP_005169656.1	CDS	BCGMEX_0184	NC_016804.1	209171	209905	D	MCE associated membrane protein	209171..209905	Mycobacterium bovis BCG str. Mexico	11808448
YP_005169657.1	CDS	lprO	NC_016804.1	209936	211045	R	Differs from Rv0179c by 1aa, H124R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative lipoprotein	complement(209936..211045)	Mycobacterium bovis BCG str. Mexico	11808449
YP_005169658.1	CDS	BCGMEX_0186c	NC_016804.1	211125	212483	R	putative transmembrane protein	complement(211125..212483)	Mycobacterium bovis BCG str. Mexico	11808450
YP_005169659.1	CDS	BCGMEX_0187c	NC_016804.1	212510	213244	R	Pirin-like protein	complement(212510..213244)	Mycobacterium bovis BCG str. Mexico	11808451
YP_005169660.1	CDS	sigG	NC_016804.1	213261	214373	R	RNA polymerase sigma factor	complement(213261..214373)	Mycobacterium bovis BCG str. Mexico	11808452
YP_005169661.1	CDS	BCGMEX_0189	NC_016804.1	214321	215160	D	putative lysophospholipase	214321..215160	Mycobacterium bovis BCG str. Mexico	11808453
YP_005169662.1	CDS	BCGMEX_0190	NC_016804.1	215202	215951	D	hypothetical protein	215202..215951	Mycobacterium bovis BCG str. Mexico	11808454
YP_005169663.1	CDS	BCGMEX_0191	NC_016804.1	215948	216457	D	hypothetical protein	215948..216457	Mycobacterium bovis BCG str. Mexico	11808455
YP_005169664.1	CDS	bglS	NC_016804.1	216502	218577	D	Differs from Mb0192 by 1aa, S504I, and from Rv0186 by 2aa, S504I, R532P in BCG Pasteur, BCG Tokyo and BCG Mexico; putative beta-glucosidase	216502..218577	Mycobacterium bovis BCG str. Mexico	11808456
YP_005169665.1	CDS	BCGMEX_0193	NC_016804.1	218938	219600	D	Differs from Rv0187 and Mb0193 by 1aa, V147A in BCG Pasteur, BCG Tokyo and BCG Mexico; O-methyltransferase	218938..219600	Mycobacterium bovis BCG str. Mexico	11808457
YP_005169666.1	CDS	BCGMEX_0194	NC_016804.1	219719	220150	D	transmembrane protein	219719..220150	Mycobacterium bovis BCG str. Mexico	11808458
YP_005169667.1	CDS	ilvD	NC_016804.1	220229	221956	R	dihydroxy-acid dehydratase	complement(220229..221956)	Mycobacterium bovis BCG str. Mexico	11808459
YP_005169668.1	CDS	BCGMEX_0196	NC_016804.1	222104	222394	D	hypothetical protein	222104..222394	Mycobacterium bovis BCG str. Mexico	11808460
YP_005169669.1	CDS	BCGMEX_0197	NC_016804.1	222522	223763	D	putative integral membrane protein	222522..223763	Mycobacterium bovis BCG str. Mexico	11808461
YP_005169670.1	CDS	BCGMEX_0198	NC_016804.1	223840	224898	D	In Mycobacterium tuberculosis strain H37Rv, Rv0192 and Rv0192A exist as 2 genes with an overlap region. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a single base insertion (*-g) leads to a single product. Differs from Mb0198 by 1aa, A279V and from Rv0192 by 2aa, P113S, A279V in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	223840..224898	Mycobacterium bovis BCG str. Mexico	11808462
YP_005169671.1	CDS	BCGMEX_0199c	NC_016804.1	224958	226805	R	Differs from Rv0193c and Mb0199c by 1aa, E417K in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(224958..226805)	Mycobacterium bovis BCG str. Mexico	11808463
YP_005169672.1	CDS	BCGMEX_0200	NC_016804.1	227112	230696	D	Differs from Mb0200 by 1aa, I49V, and from Rv0194 by 2aa, T74M, M223T in BCG Pasteur, BCG Tokyo and BCG Mexico; putative drugs-transport transmembrane ATP-binding protein ABC transporter	227112..230696	Mycobacterium bovis BCG str. Mexico	11808464
YP_005169673.1	CDS	BCGMEX_0201	NC_016804.1	231134	231769	D	LuxR family transcriptional regulator	231134..231769	Mycobacterium bovis BCG str. Mexico	11808465
YP_005169674.1	CDS	BCGMEX_0202	NC_016804.1	231882	232466	D	TetR family transcriptional regulator	231882..232466	Mycobacterium bovis BCG str. Mexico	11808466
YP_005169675.1	CDS	BCGMEX_0203	NC_016804.1	232466	234712	D	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a single base transversion (T-G) introduces a stop codon that leads to a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (748 aa versus 762 aa). Differs from Rv0197 by 1aa, S378R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative oxidoreductase	232466..234712	Mycobacterium bovis BCG str. Mexico	11808467
YP_005169676.1	CDS	BCGMEX_0204c	NC_016804.1	234753	236744	R	putative zinc metalloprotease	complement(234753..236744)	Mycobacterium bovis BCG str. Mexico	11808468
YP_005169677.1	CDS	BCGMEX_0205	NC_016804.1	236787	237446	D	hypothetical protein	236787..237446	Mycobacterium bovis BCG str. Mexico	11808469
YP_005169678.1	CDS	BCGMEX_0206	NC_016804.1	237443	238132	D	putative transmembrane protein	237443..238132	Mycobacterium bovis BCG str. Mexico	11808470
YP_005169679.1	CDS	BCGMEX_0207c	NC_016804.1	238129	238632	R	hypothetical protein	complement(238129..238632)	Mycobacterium bovis BCG str. Mexico	11808471
YP_005169680.1	CDS	mmpL11	NC_016804.1	238629	241529	R	putative transmembrane transport protein	complement(238629..241529)	Mycobacterium bovis BCG str. Mexico	11808472
YP_005169681.1	CDS	BCGMEX_0209	NC_016804.1	241751	242161	D	Differs from Rv0203 and Mb0209 by 1aa, T88K in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	241751..242161	Mycobacterium bovis BCG str. Mexico	11808473
YP_005169682.1	CDS	BCGMEX_0210c	NC_016804.1	242213	243496	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, the presence of a more likely start codon leads to a longer product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (427 aa versus 412 aa). Differs from Rv0204c by 1aa, L321V in BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	complement(242213..243496)	Mycobacterium bovis BCG str. Mexico	11808474
YP_005169683.1	CDS	BCGMEX_0211	NC_016804.1	243621	244724	D	Differs from Rv0205 by 1aa, R72H in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, Tokyo and BCG Mexico; transmembrane protein	243621..244724	Mycobacterium bovis BCG str. Mexico	11808475
YP_005169684.1	CDS	mmpL3	NC_016804.1	244721	247555	R	Differs from Rv0206c by 2aa, I384F, E466D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(244721..247555)	Mycobacterium bovis BCG str. Mexico	11808476
YP_005169685.1	CDS	BCGMEX_0213c	NC_016804.1	247621	248349	R	hypothetical protein	complement(247621..248349)	Mycobacterium bovis BCG str. Mexico	11808477
YP_005169686.1	CDS	BCGMEX_0214c	NC_016804.1	248352	249143	R	tRNA (guanine46-N7-)-methyltransferase	complement(248352..249143)	Mycobacterium bovis BCG str. Mexico	11808478
YP_005169687.1	CDS	BCGMEX_0215	NC_016804.1	249275	250360	D	Differs from Rv0209 by 1aa, A162V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	249275..250360	Mycobacterium bovis BCG str. Mexico	11808479
YP_005169688.1	CDS	BCGMEX_0216	NC_016804.1	250357	251835	D	Differs from Rv0210 by 1aa, T486A in Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	250357..251835	Mycobacterium bovis BCG str. Mexico	11808480
YP_005169689.1	CDS	pckA	NC_016804.1	252019	253839	D	phosphoenolpyruvate carboxykinase	252019..253839	Mycobacterium bovis BCG str. Mexico	11808481
YP_005169690.1	CDS	nadR	NC_016804.1	253906	254877	R	putative transcriptional regulatory protein, AsnC-family	complement(253906..254877)	Mycobacterium bovis BCG str. Mexico	11808482
YP_005169691.1	CDS	BCGMEX_0219c	NC_016804.1	254874	256187	R	putative methyltransferase	complement(254874..256187)	Mycobacterium bovis BCG str. Mexico	11808483
YP_005169692.1	CDS	fadD4	NC_016804.1	256301	257914	D	Differs from Rv0214 by 1aa, A40G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, Tokyo and BCG Mexico; putative fatty-acid-CoA ligase fadD4	256301..257914	Mycobacterium bovis BCG str. Mexico	11808484
YP_005169693.1	CDS	fadE3	NC_016804.1	257956	259122	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a 29 bp insertion leads to a longer product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (388 aa versus 357 aa). Differs from Mb0221c by 1aa, S361A in BCG Pasteur, BCG Tokyo and BCG Mexico; acyl-CoA dehydrogenase	complement(257956..259122)	Mycobacterium bovis BCG str. Mexico	11808485
YP_005169694.1	CDS	BCGMEX_0222	NC_016804.1	259179	260192	D	hypothetical protein	259179..260192	Mycobacterium bovis BCG str. Mexico	11808486
YP_005169695.1	CDS	lipW	NC_016804.1	260189	261097	R	Differs from Rv0217c by 1aa T184P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative esterase	complement(260189..261097)	Mycobacterium bovis BCG str. Mexico	11808487
YP_005169696.1	CDS	BCGMEX_0224	NC_016804.1	261190	262518	D	Differs from Rv0218 by 2aa, R316C, N413D in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; transmembrane protein	261190..262518	Mycobacterium bovis BCG str. Mexico	11808488
YP_005169697.1	CDS	BCGMEX_0225	NC_016804.1	262520	263068	D	transmembrane protein	262520..263068	Mycobacterium bovis BCG str. Mexico	11808489
YP_005169698.1	CDS	lipC	NC_016804.1	263078	264319	D	putative esterase	263078..264319	Mycobacterium bovis BCG str. Mexico	11808490
YP_005169699.1	CDS	BCGMEX_0227	NC_016804.1	264333	265106	D	In Mycobacterium bovis and Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, RD10, a 1902 bp deletion leads to a shorter product with a different COOH part, compared to its homolog in Mycobacterium tuberculosis strain H37Rv (257 aa versus 469 aa). It also leads to the deletion of the next protein, echA1 (Rv0222) in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	264333..265106	Mycobacterium bovis BCG str. Mexico	11808491
YP_005169700.1	CDS	BCGMEX_0228c	NC_016804.1	264972	265781	R	In Mycobacterium bovis strain AF2122/97, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, RD10, a 1902 bp deletion, compared to Mycobacterium tuberculosis H37Rv, truncates Rv0221c and Rv0223c and removes Rv0222c. In Mycobacterium bovis BCG Pasteur and BCG Tokyo, a single base deletion (*-C) splits gene into two parts compared to its homologs in Mycobacterium tuberculosis strain H37Rv and Mycobacterium bovis AF2122/97 (116 aa and 269 aa, versus 487 aa and 385 aa, respectively). Deletion in Mycobacterium bovis, bovis BCG Pasteur, BCG Tokyo and BCG Mexico of region RD10 leads to a different COOH part compared to Mycobacterium tuberculosis strain H37Rv. Maybe pseudogene.; putative aldehyde dehydrogenase	complement(264972..265781)	Mycobacterium bovis BCG str. Mexico	11808492
YP_005169701.1	CDS	BCGMEX_0229c	NC_016804.1	265778	266128	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a single base deletion(*-C) splits gene into two parts compared to its homologs in Mycobacterium tuberculosis strain H37Rv and Mycobacterium bovis AF2122/97 (116 aa and 269 aa, versus 487 aa and 385 aa, respectively). May be pseudogene; putative aldehyde dehydrogenase	complement(265778..266128)	Mycobacterium bovis BCG str. Mexico	11808493
YP_005169702.1	CDS	BCGMEX_0230c	NC_016804.1	266227	266991	R	Differs from Rv0224c by 1aa, L117F in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative methyltransferase	complement(266227..266991)	Mycobacterium bovis BCG str. Mexico	11808494
YP_005169703.1	CDS	BCGMEX_0231	NC_016804.1	267027	268181	D	glycosyltransferase	267027..268181	Mycobacterium bovis BCG str. Mexico	11808495
YP_005169704.1	CDS	BCGMEX_0232c	NC_016804.1	268198	269928	R	transmembrane protein	complement(268198..269928)	Mycobacterium bovis BCG str. Mexico	11808496
YP_005169705.1	CDS	BCGMEX_0233c	NC_016804.1	269938	271203	R	Differs from Rv0227c by 1aa, R29S, and from Mb0232c by 1aa, S392N in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(269938..271203)	Mycobacterium bovis BCG str. Mexico	11808497
YP_005169706.1	CDS	BCGMEX_0234	NC_016804.1	271419	272642	D	acyltransferase	271419..272642	Mycobacterium bovis BCG str. Mexico	11808498
YP_005169707.1	CDS	BCGMEX_0235c	NC_016804.1	272670	273350	R	hypothetical protein	complement(272670..273350)	Mycobacterium bovis BCG str. Mexico	11808499
YP_005169708.1	CDS	php	NC_016804.1	273347	274327	R	Differs from Rv0230c by 1aa, E199D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; phosphotriesterase-like protein	complement(273347..274327)	Mycobacterium bovis BCG str. Mexico	11808500
YP_005169709.1	CDS	fadE4	NC_016804.1	274422	276128	D	acyl-CoA dehydrogenase	274422..276128	Mycobacterium bovis BCG str. Mexico	11808501
YP_005169710.1	CDS	BCGMEX_0238	NC_016804.1	276263	276952	D	TetR family transcriptional regulator	276263..276952	Mycobacterium bovis BCG str. Mexico	11808502
YP_005169711.1	CDS	nrdB	NC_016804.1	276949	277893	D	Differs from Rv0233 by 1aa, D33H in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; ribonucleoside-diphosphate reductase subunit beta	276949..277893	Mycobacterium bovis BCG str. Mexico	11808503
YP_005169712.1	CDS	gabD1	NC_016804.1	277969	279504	R	Succinate-semialdehyde dehydrogenase [NADP+] 1	complement(277969..279504)	Mycobacterium bovis BCG str. Mexico	11808504
YP_005169713.1	CDS	BCGMEX_0241c	NC_016804.1	279530	280978	R	putative transmembrane protein	complement(279530..280978)	Mycobacterium bovis BCG str. Mexico	11808505
YP_005169714.1	CDS	BCGMEX_0242c	NC_016804.1	281013	285215	R	Differs from Rv0236c by 3aa, V412M, A990T, G1080S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; transmembrane protein	complement(281013..285215)	Mycobacterium bovis BCG str. Mexico	11808506
YP_005169715.1	CDS	BCGMEX_0243c	NC_016804.1	285262	285435	R	Small secreted protein	complement(285262..285435)	Mycobacterium bovis BCG str. Mexico	11808507
YP_005169716.1	CDS	lpqI	NC_016804.1	285550	286716	D	Differs from Rv0237 by 1aa, L129V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative lipoprotein	285550..286716	Mycobacterium bovis BCG str. Mexico	11808508
YP_005169717.1	CDS	BCGMEX_0245	NC_016804.1	286792	287406	D	TetR family transcriptional regulator	286792..287406	Mycobacterium bovis BCG str. Mexico	11808509
YP_005169718.1	CDS	BCGMEX_0246	NC_016804.1	287468	287701	D	hypothetical protein	287468..287701	Mycobacterium bovis BCG str. Mexico	11808510
YP_005169719.1	CDS	BCGMEX_0247	NC_016804.1	287709	288146	D	Differs from Rv0240 by 1aa, S31A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	287709..288146	Mycobacterium bovis BCG str. Mexico	11808511
YP_005169720.1	CDS	BCGMEX_0248c	NC_016804.1	288176	289018	R	hypothetical protein	complement(288176..289018)	Mycobacterium bovis BCG str. Mexico	11808512
YP_005169721.1	CDS	fabG4	NC_016804.1	289029	290393	R	3-oxoacyl-ACP reductase	complement(289029..290393)	Mycobacterium bovis BCG str. Mexico	11808513
YP_005169722.1	CDS	fadA2	NC_016804.1	290535	291857	D	acetyl-CoA acyltransferase	290535..291857	Mycobacterium bovis BCG str. Mexico	11808514
YP_005169723.1	CDS	fadE5	NC_016804.1	292163	293998	R	Differs from Mb0250c by 1aa, N503D and from Rv0244c by 3aa, R394K, A479E, N503D in BCG Pasteur, BCG Tokyo and BCG Mexico; putative acyl- CoA dehydrogenase	complement(292163..293998)	Mycobacterium bovis BCG str. Mexico	11808515
YP_005169724.1	CDS	BCGMEX_0252	NC_016804.1	294370	294858	D	putative oxidoreductase	294370..294858	Mycobacterium bovis BCG str. Mexico	11808516
YP_005169725.1	CDS	BCGMEX_0253	NC_016804.1	295174	296484	D	Differs from Mb0252 by 1aa, A129V in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; integral membrane protein	295174..296484	Mycobacterium bovis BCG str. Mexico	11808517
YP_005169726.1	CDS	BCGMEX_0254c	NC_016804.1	296481	297227	R	Fumarate reductase iron-sulfur subunit	complement(296481..297227)	Mycobacterium bovis BCG str. Mexico	11808518
YP_005169727.1	CDS	sdhA	NC_016804.1	297228	299168	R	Succinate dehydrogenase flavoprotein subunit	complement(297228..299168)	Mycobacterium bovis BCG str. Mexico	11808519
YP_005169728.1	CDS	BCGMEX_0256c	NC_016804.1	299199	300020	R	putative succinate dehydrogenase membrane anchor subunit	complement(299199..300020)	Mycobacterium bovis BCG str. Mexico	11808520
YP_005169729.1	CDS	BCGMEX_0257c	NC_016804.1	300100	300393	R	hypothetical protein	complement(300100..300393)	Mycobacterium bovis BCG str. Mexico	11808521
YP_005169730.1	CDS	hsp	NC_016804.1	300538	301017	R	heat shock protein	complement(300538..301017)	Mycobacterium bovis BCG str. Mexico	11808522
YP_005169731.1	CDS	nirB	NC_016804.1	301231	303792	D	nitrite reductase [NAD(P)H] large subunit	301231..303792	Mycobacterium bovis BCG str. Mexico	11808523
YP_005169732.1	CDS	nirD	NC_016804.1	303818	304174	D	nitrite reductase [NAD(P)H] small subunit	303818..304174	Mycobacterium bovis BCG str. Mexico	11808524
YP_005169733.1	CDS	cobU	NC_016804.1	304190	304714	R	putative bifunctional cobalamin biosynthesis protein	complement(304190..304714)	Mycobacterium bovis BCG str. Mexico	11808525
YP_005169734.1	CDS	cobQ1	NC_016804.1	304739	306223	R	cobyric acid synthase	complement(304739..306223)	Mycobacterium bovis BCG str. Mexico	11808526
YP_005169735.1	CDS	PPE2	NC_016804.1	306242	307912	R	PPE family protein	complement(306242..307912)	Mycobacterium bovis BCG str. Mexico	11808527
YP_005169736.1	CDS	BCGMEX_0264c	NC_016804.1	308302	308634	R	hypothetical protein	complement(308302..308634)	Mycobacterium bovis BCG str. Mexico	11808528
YP_005169737.1	CDS	BCGMEX_0265c	NC_016804.1	308659	309114	R	hypothetical protein	complement(308659..309114)	Mycobacterium bovis BCG str. Mexico	11808529
YP_005169738.1	CDS	BCGMEX_0266c	NC_016804.1	309139	309882	R	Differs from Rv0259c by 1aa, V182A in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(309139..309882)	Mycobacterium bovis BCG str. Mexico	11808530
YP_005169739.1	CDS	BCGMEX_0267c	NC_016804.1	309879	311024	R	Response regulator domain protein; Uroporphyrinogen-III synthetase	complement(309879..311024)	Mycobacterium bovis BCG str. Mexico	11808531
YP_005169740.1	CDS	narK3	NC_016804.1	311124	312533	R	putative integral membrane nitrite extrusion protein	complement(311124..312533)	Mycobacterium bovis BCG str. Mexico	11808532
YP_005169741.1	CDS	aac	NC_016804.1	312674	313219	R	aminoglycoside 2'-N-acetyltransferase	complement(312674..313219)	Mycobacterium bovis BCG str. Mexico	11808533
YP_005169742.1	CDS	BCGMEX_0270c	NC_016804.1	313229	314131	R	hypothetical protein	complement(313229..314131)	Mycobacterium bovis BCG str. Mexico	11808534
YP_005169743.1	CDS	BCGMEX_0271c	NC_016804.1	314148	314780	R	hypothetical protein	complement(314148..314780)	Mycobacterium bovis BCG str. Mexico	11808535
YP_005169744.1	CDS	BCGMEX_0272c	NC_016804.1	314876	315868	R	Differs from Rv0265c and Mb0271c by 1aa, C313Y in BCG Pasteur, BCG Tokyo and BCG Mexico; putative periplasmic iron-transport lipoprotein	complement(314876..315868)	Mycobacterium bovis BCG str. Mexico	11808536
YP_005169745.1	CDS	oplA	NC_016804.1	315890	319519	R	putative 5-oxoprolinase	complement(315890..319519)	Mycobacterium bovis BCG str. Mexico	11808537
YP_005169746.1	CDS	narU	NC_016804.1	319696	321087	D	putative integral membrane nitrite extrusion protein	319696..321087	Mycobacterium bovis BCG str. Mexico	11808538
YP_005169747.1	CDS	BCGMEX_0275c	NC_016804.1	321129	321638	R	hypothetical protein	complement(321129..321638)	Mycobacterium bovis BCG str. Mexico	11808539
YP_005169748.1	CDS	BCGMEX_0276c	NC_016804.1	321703	322896	R	hypothetical protein	complement(321703..322896)	Mycobacterium bovis BCG str. Mexico	11808540
YP_005169749.1	CDS	fadD2	NC_016804.1	322932	324614	D	Differs from Rv0270 and Mb0276 by 1aa, E112D in BCG Pasteur, BCG Tokyo and BCG Mexico; putative fatty-acid-CoA ligase	322932..324614	Mycobacterium bovis BCG str. Mexico	11808541
YP_005169750.1	CDS	fadE6	NC_016804.1	324631	326826	R	putative acyl-CoA dehydrogenase	complement(324631..326826)	Mycobacterium bovis BCG str. Mexico	11808542
YP_005169751.1	CDS	BCGMEX_0279c	NC_016804.1	326940	328073	R	Differs from Mb0278c by 1aa, P164L in Mycobacterium tuberculosis H37Rv, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(326940..328073)	Mycobacterium bovis BCG str. Mexico	11808543
YP_005169752.1	CDS	BCGMEX_0280c	NC_016804.1	328070	328690	R	putative transcriptional regulatory protein, TetR family	complement(328070..328690)	Mycobacterium bovis BCG str. Mexico	11808544
YP_005169753.1	CDS	BCGMEX_0281	NC_016804.1	328787	329368	D	hypothetical protein	328787..329368	Mycobacterium bovis BCG str. Mexico	11808545
YP_005169754.1	CDS	BCGMEX_0282c	NC_016804.1	329298	330023	R	Differs from Rv0275c by 1aa, L24S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transcriptional regulatory protein, TetR family	complement(329298..330023)	Mycobacterium bovis BCG str. Mexico	11808546
YP_005169755.1	CDS	BCGMEX_0283	NC_016804.1	330113	331033	D	hypothetical protein	330113..331033	Mycobacterium bovis BCG str. Mexico	11808547
YP_005169756.1	CDS	BCGMEX_0284c	NC_016804.1	331073	331501	R	hypothetical protein	complement(331073..331501)	Mycobacterium bovis BCG str. Mexico	11808548
YP_005169757.1	CDS	BCGMEX_0285c	NC_016804.1	331525	331782	R	Differs by 1 aa, Q24* from Rv0227A and Mb0351A in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(331525..331782)	Mycobacterium bovis BCG str. Mexico	11808549
YP_005169758.1	CDS	PE_PGRS3a	NC_016804.1	331867	334617	R	In Mycobacterium tuberculosis strain H37Rv, PE_PGRS3 exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a large insertion leads to an extra copy of PE_PGRS3. Also, a frameshift due to single base deletion (T-*), splits this extra copy of PE_PGRS3 into 2 parts, PE_PGRS3a and PE_PGRS3b. Also differs from Mb0285c by an insertion of 144bp.; PE-PGRS family protein	complement(331867..334617)	Mycobacterium bovis BCG str. Mexico	11808551
YP_005169759.1	CDS	PE_PGRS3	NC_016804.1	334881	337580	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a insertion of 66 bp lead to a longer product than to the homolog Mycobacterium bovis (899 aa versus 877 aa). In Mycobacterium bovis, 2 deletions, one of 18 bp and the other of 66 bp, and part of a 2780 bp insertion , leads to a shorter product with a different 3' end compared to its homolog in Mycobacterium tuberculosis strain H37Rv (877 aa versus 957 aa); PE-PGRS family protein	complement(334881..337580)	Mycobacterium bovis BCG str. Mexico	11808552
YP_005169760.1	CDS	PE_PGRS4	NC_016804.1	337830	340334	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, 2 insertion seach of 9 bp and a deletion of 9 bp, lead to a longer product compared to its homolog in Mycobacterium bovis (834 aa versus 831 aa). In Mycobacterium bovis, 2 deletions each of 9 bp , leads to a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (831 aa versus 837 aa); PE-PGRS family protein	complement(337830..340334)	Mycobacterium bovis BCG str. Mexico	11808553
YP_005169761.1	CDS	PPE3	NC_016804.1	340625	342235	D	Differs from Rv0280 by 1 aa P337S in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; PPE family protein	340625..342235	Mycobacterium bovis BCG str. Mexico	11808554
YP_005169762.1	CDS	BCGMEX_0291	NC_016804.1	342259	343167	D	putative S-adenosyl-L-methionine-dependent methyltransferase	342259..343167	Mycobacterium bovis BCG str. Mexico	11808555
YP_005169763.1	CDS	eccA3	NC_016804.1	343392	345287	D	Differs from Rv0282 by 1aa, A6E in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative ESX-3 secretion system protein	343392..345287	Mycobacterium bovis BCG str. Mexico	11808556
YP_005169764.1	CDS	eccB3	NC_016804.1	345284	346900	D	putative ESX-3 secretion system protein	345284..346900	Mycobacterium bovis BCG str. Mexico	11808557
YP_005169765.1	CDS	eccC3	NC_016804.1	346897	350889	D	putative ESX-3 secretion system protein	346897..350889	Mycobacterium bovis BCG str. Mexico	11808558
YP_005169766.1	CDS	PE5	NC_016804.1	350886	351194	D	PE family protein	350886..351194	Mycobacterium bovis BCG str. Mexico	11808559
YP_005169767.1	CDS	PPE4	NC_016804.1	351197	352738	D	PPE family protein	351197..352738	Mycobacterium bovis BCG str. Mexico	11808560
YP_005169768.1	CDS	esxG	NC_016804.1	352787	353080	D	hypothetical protein	352787..353080	Mycobacterium bovis BCG str. Mexico	11808561
YP_005169769.1	CDS	esxH	NC_016804.1	353110	353400	D	ESAT-6-like protein	353110..353400	Mycobacterium bovis BCG str. Mexico	11808562
YP_005169770.1	CDS	espG3	NC_016804.1	353411	354298	D	putative ESX-3 secretion-associated protein EspG3	353411..354298	Mycobacterium bovis BCG str. Mexico	11808563
YP_005169771.1	CDS	BCGMEX_0300	NC_016804.1	354345	355763	D	Differs from Rv0290 by 1aa, T400A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	354345..355763	Mycobacterium bovis BCG str. Mexico	11808564
YP_005169772.1	CDS	BCGMEX_0301	NC_016804.1	355760	357145	D	putative protease	355760..357145	Mycobacterium bovis BCG str. Mexico	11808565
YP_005169773.1	CDS	BCGMEX_0302	NC_016804.1	357142	358137	D	Differs from Rv0292 by 1aa, D217N in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	357142..358137	Mycobacterium bovis BCG str. Mexico	11808566
YP_005169774.1	CDS	BCGMEX_0303c	NC_016804.1	358124	359326	R	Differs from Rv0293c and Mb0301c by 1aa, S263G in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(358124..359326)	Mycobacterium bovis BCG str. Mexico	11808567
YP_005169775.1	CDS	tam	NC_016804.1	359433	360218	D	Trans-aconitate 2-methyltransferase	359433..360218	Mycobacterium bovis BCG str. Mexico	11808568
YP_005169776.1	CDS	BCGMEX_0305c	NC_016804.1	360207	361010	R	hypothetical protein	complement(360207..361010)	Mycobacterium bovis BCG str. Mexico	11808569
YP_005169777.1	CDS	BCGMEX_0306c	NC_016804.1	361020	362417	R	putative sulfatase	complement(361020..362417)	Mycobacterium bovis BCG str. Mexico	11808570
YP_005169778.1	CDS	PE_PGRS5	NC_016804.1	362596	364416	D	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a 45 bp in-frame insertion leads to a longer product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (606 aa versus 591 aa); PE-PGRS family protein	362596..364416	Mycobacterium bovis BCG str. Mexico	11808571
YP_005169779.1	CDS	BCGMEX_0308	NC_016804.1	364559	364786	D	hypothetical protein	364559..364786	Mycobacterium bovis BCG str. Mexico	11808572
YP_005169780.1	CDS	BCGMEX_0309	NC_016804.1	364783	365085	D	Differs from Mb0307 by 1aa, S13N in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	364783..365085	Mycobacterium bovis BCG str. Mexico	11808573
YP_005169781.1	CDS	BCGMEX_0310	NC_016804.1	365133	365354	D	hypothetical protein	365133..365354	Mycobacterium bovis BCG str. Mexico	11808574
YP_005169782.1	CDS	BCGMEX_0311	NC_016804.1	365351	365776	D	hypothetical protein	365351..365776	Mycobacterium bovis BCG str. Mexico	11808575
YP_005169783.1	CDS	BCGMEX_0312	NC_016804.1	365913	366545	D	Differs from Mb0310 by 1aa A124V in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transcriptional regulatory protein, TetR family	365913..366545	Mycobacterium bovis BCG str. Mexico	11808576
YP_005169784.1	CDS	BCGMEX_0313	NC_016804.1	366542	367450	D	putative dehydrogenase/reductase	366542..367450	Mycobacterium bovis BCG str. Mexico	11808577
YP_005169785.1	CDS	PPE5	NC_016804.1	367458	370901	R	In Mycobacterium tuberculosis strain H37Rv, PPE5 and PPE6 exist as separate genes. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a frameshift due to a single base deletion (G-*) leads to a shorter CDS (Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico) Equivalent to the 3' end of Rv0304c/PPE5. Differs from Rv0304c by 3aa, S481G, F708S, A955T, and 5 codon in-frame deletion at position 503 in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; PPE family protein	complement(367458..370901)	Mycobacterium bovis BCG str. Mexico	11808578
YP_005169786.1	CDS	PPE6	NC_016804.1	371045	376972	R	In Mycobacterium tuberculosis strain H37Rv, PPE5 and PPE6 exist as separate genes. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a single base deletion (T-*) resulting in the absence of a stop codon leads to a longer product. The second part of this CDS shares homology with the 5' end of Rv0304c/PPE5. Differs from Mb0313c by in-frame deletion of 10 codons in BCG Pasteur, BCG Tokyo and BCG Mexico; PPE family protein	complement(371045..376972)	Mycobacterium bovis BCG str. Mexico	11808579
YP_005169787.1	CDS	BCGMEX_0316	NC_016804.1	377175	377846	D	putative oxidoreductase	377175..377846	Mycobacterium bovis BCG str. Mexico	11808580
YP_005169788.1	CDS	BCGMEX_0317c	NC_016804.1	377834	378316	R	hypothetical protein	complement(377834..378316)	Mycobacterium bovis BCG str. Mexico	11808581
YP_005169789.1	CDS	BCGMEX_0318	NC_016804.1	378374	379090	D	integral membrane protein	378374..379090	Mycobacterium bovis BCG str. Mexico	11808582
YP_005169790.1	CDS	BCGMEX_0319	NC_016804.1	379192	379848	D	hypothetical protein	379192..379848	Mycobacterium bovis BCG str. Mexico	11808583
YP_005169791.1	CDS	BCGMEX_0320c	NC_016804.1	379918	380409	R	hypothetical protein	complement(379918..380409)	Mycobacterium bovis BCG str. Mexico	11808584
YP_005169792.1	CDS	BCGMEX_0321	NC_016804.1	380433	381662	D	hypothetical protein	380433..381662	Mycobacterium bovis BCG str. Mexico	11808585
YP_005169793.1	CDS	BCGMEX_0322	NC_016804.1	381817	383679	D	Differs from Rv0312 by 2aa, G159S, L563P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative proline and threonine rich protein	381817..383679	Mycobacterium bovis BCG str. Mexico	11808586
YP_005169794.1	CDS	BCGMEX_0323	NC_016804.1	383751	384137	D	hypothetical protein	383751..384137	Mycobacterium bovis BCG str. Mexico	11808587
YP_005169795.1	CDS	BCGMEX_0324c	NC_016804.1	384140	384802	R	Differs from Rv0314c by 1aa, A184V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(384140..384802)	Mycobacterium bovis BCG str. Mexico	11808588
YP_005169796.1	CDS	BCGMEX_0325	NC_016804.1	384863	385747	D	Differs from Rv0315 by 1aa, T260K in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative beta-1,3-glucanase	384863..385747	Mycobacterium bovis BCG str. Mexico	11808589
YP_005169797.1	CDS	BCGMEX_0326	NC_016804.1	385796	386410	D	muconolactone isomerase	385796..386410	Mycobacterium bovis BCG str. Mexico	11808590
YP_005169798.1	CDS	glpQ2	NC_016804.1	386434	387204	R	putative glycerophosphoryl diester phosphodiesterase	complement(386434..387204)	Mycobacterium bovis BCG str. Mexico	11808591
YP_005169799.1	CDS	BCGMEX_0328c	NC_016804.1	387566	388360	R	Differs from Rv0318c by 1aa, A223G in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative integral membrane protein	complement(387566..388360)	Mycobacterium bovis BCG str. Mexico	11808593
YP_005169800.1	CDS	pcp	NC_016804.1	388409	389077	D	Pyrrolidone-carboxylate peptidase	388409..389077	Mycobacterium bovis BCG str. Mexico	11808594
YP_005169801.1	CDS	BCGMEX_0330	NC_016804.1	389149	389811	D	hypothetical protein	389149..389811	Mycobacterium bovis BCG str. Mexico	11808595
YP_005169802.1	CDS	dcd	NC_016804.1	389843	390415	D	Differs from Rv0321 by 1aa, C183Y in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Deoxycytidine triphosphate deaminase	389843..390415	Mycobacterium bovis BCG str. Mexico	11808596
YP_005169803.1	CDS	udgA	NC_016804.1	390521	391852	D	putative UDP-glucose 6-dehydrogenase	390521..391852	Mycobacterium bovis BCG str. Mexico	11808597
YP_005169804.1	CDS	BCGMEX_0333c	NC_016804.1	391841	392512	R	Differs from Rv0323c by 1aa, G142S in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(391841..392512)	Mycobacterium bovis BCG str. Mexico	11808598
YP_005169805.1	CDS	BCGMEX_0334	NC_016804.1	392613	393293	D	Differs from Rv0324 by 1aa, A168T in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transcriptional regulatory protein, ArsR family	392613..393293	Mycobacterium bovis BCG str. Mexico	11808599
YP_005169806.1	CDS	BCGMEX_0335	NC_016804.1	393300	393989	D	In Mycobacterium tuberculosis strain H37Rv, Rv0325 and Rv0326 exist as 2 genes. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, the absence of a stop codon between Rv0325 and Rv0326 due to a single base transition (T-C) leads to single product; hypothetical protein	393300..393989	Mycobacterium bovis BCG str. Mexico	11808600
YP_005169807.1	CDS	cyp135A1	NC_016804.1	393957	395306	R	Differs from Rv0327c by 1aa, Y100H in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative cytochrome P450 135A1	complement(393957..395306)	Mycobacterium bovis BCG str. Mexico	11808601
YP_005169808.1	CDS	BCGMEX_0337	NC_016804.1	395372	395974	D	putative transcriptional regulatory protein, TetR family	395372..395974	Mycobacterium bovis BCG str. Mexico	11808602
YP_005169809.1	CDS	BCGMEX_0338c	NC_016804.1	395955	396581	R	Differs from Rv0329c by 1aa, S129W in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(395955..396581)	Mycobacterium bovis BCG str. Mexico	11808603
YP_005169810.1	CDS	BCGMEX_0339c	NC_016804.1	396608	397348	R	hypothetical protein	complement(396608..397348)	Mycobacterium bovis BCG str. Mexico	11808604
YP_005169811.1	CDS	BCGMEX_0340	NC_016804.1	397462	398628	D	putative dehydrogenase/reductase	397462..398628	Mycobacterium bovis BCG str. Mexico	11808605
YP_005169812.1	CDS	BCGMEX_0341	NC_016804.1	398703	399488	D	Differs from Rv0332 by 1aa, G198E in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	398703..399488	Mycobacterium bovis BCG str. Mexico	11808606
YP_005169813.1	CDS	BCGMEX_0342	NC_016804.1	399515	399889	D	hypothetical protein	399515..399889	Mycobacterium bovis BCG str. Mexico	11808607
YP_005169814.1	CDS	rmlA	NC_016804.1	399919	400785	D	glucose-1-phosphate thymidylyltransferase	399919..400785	Mycobacterium bovis BCG str. Mexico	11808608
YP_005169815.1	CDS	PE6	NC_016804.1	400796	401311	R	Differs from Rv0335c and Mb0340 by 1aa P131T in BCG Pasteur, BCG Tokyo and BCG Mexico; PE family protein	complement(400796..401311)	Mycobacterium bovis BCG str. Mexico	11808609
YP_005169816.1	CDS	BCGMEX_0345	NC_016804.1	401453	402964	D	Differs from Rv0336 by 1aa, H496P in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	401453..402964	Mycobacterium bovis BCG str. Mexico	11808610
YP_005169817.1	CDS	aspC	NC_016804.1	403134	404423	R	aspartate aminotransferase	complement(403134..404423)	Mycobacterium bovis BCG str. Mexico	11808611
YP_005169818.1	CDS	BCGMEX_0347c	NC_016804.1	404454	407102	R	Differs from Rv0338c by 2aa, G506R, V621A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative iron-sulfur-binding reductase	complement(404454..407102)	Mycobacterium bovis BCG str. Mexico	11808612
YP_005169819.1	CDS	BCGMEX_0348c	NC_016804.1	407211	409709	R	putative transcriptional regulatory protein	complement(407211..409709)	Mycobacterium bovis BCG str. Mexico	11808613
YP_005169820.1	CDS	BCGMEX_0349	NC_016804.1	409895	410434	D	hypothetical protein	409895..410434	Mycobacterium bovis BCG str. Mexico	11808614
YP_005169821.1	CDS	iniB	NC_016804.1	410623	412062	D	isoniazid-inducible protein	410623..412062	Mycobacterium bovis BCG str. Mexico	11808615
YP_005169822.1	CDS	iniA	NC_016804.1	412099	414021	D	Differs from by 2aa, S88N, Q481H in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; isoniazid-inducible protein iniA	412099..414021	Mycobacterium bovis BCG str. Mexico	11808616
YP_005169823.1	CDS	iniC	NC_016804.1	414018	415499	D	isoniazid-inducible protein iniC	414018..415499	Mycobacterium bovis BCG str. Mexico	11808617
YP_005169824.1	CDS	lpqJ	NC_016804.1	415642	416202	R	Lipoprotein	complement(415642..416202)	Mycobacterium bovis BCG str. Mexico	11808618
YP_005169825.1	CDS	BCGMEX_0354	NC_016804.1	416311	416721	D	In Mycobacterium bovis, a frameshift due to a single base deletion (A-*) leads to a shorter product with a different NH2 part compared to its homolog in Mycobacterium tuberculosis strain H37Rv in Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	416311..416721	Mycobacterium bovis BCG str. Mexico	11808619
YP_005169826.1	CDS	ansP2	NC_016804.1	416763	418226	R	putative L-asparagine permease	complement(416763..418226)	Mycobacterium bovis BCG str. Mexico	11808620
YP_005169827.1	CDS	BCGMEX_0356	NC_016804.1	418565	419551	D	membrane protein	418565..419551	Mycobacterium bovis BCG str. Mexico	11808621
YP_005169828.1	CDS	BCGMEX_0357	NC_016804.1	419554	420207	D	putative transcriptional regulatory protein	419554..420207	Mycobacterium bovis BCG str. Mexico	11808622
YP_005169829.1	CDS	BCGMEX_0358	NC_016804.1	420210	420869	D	hypothetical protein	420210..420869	Mycobacterium bovis BCG str. Mexico	11808623
YP_005169830.1	CDS	dnaK	NC_016804.1	421096	422973	D	putative chaperone protein	421096..422973	Mycobacterium bovis BCG str. Mexico	11808624
YP_005169831.1	CDS	grpE	NC_016804.1	422970	423677	D	Differs from Rv0351 by 1aa, L224S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; protein grpE	422970..423677	Mycobacterium bovis BCG str. Mexico	11808625
YP_005169832.1	CDS	dnaJ1	NC_016804.1	423713	424900	D	Differs from Rv0352 and Mb0360 by 1aa, A280T in BCG Pasteur, BCG Tokyo and BCG Mexico; chaperone protein DnaJ	423713..424900	Mycobacterium bovis BCG str. Mexico	11808626
YP_005169833.1	CDS	hspR	NC_016804.1	424900	425280	D	putative heat shock protein transcriptional regulator	424900..425280	Mycobacterium bovis BCG str. Mexico	11808627
YP_005169834.1	CDS	PPE8	NC_016804.1	425303	435826	R	In Mycobacterium tuberculosis strain H37Rv, PPE7 and PPE8 exist as 2 genes. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a 2 bp insertion (*-TA) resulting in the absence of a stop codon between the 2 genes, leads to a single product, and an altered C-terminus; PPE family protein	complement(425303..435826)	Mycobacterium bovis BCG str. Mexico	11808628
YP_005169835.1	CDS	BCGMEX_0364c	NC_016804.1	435977	436621	R	hypothetical protein	complement(435977..436621)	Mycobacterium bovis BCG str. Mexico	11808629
YP_005169836.1	CDS	purA	NC_016804.1	436618	437916	R	adenylosuccinate synthetase	complement(436618..437916)	Mycobacterium bovis BCG str. Mexico	11808630
YP_005169837.1	CDS	BCGMEX_0366	NC_016804.1	438007	438654	D	hypothetical protein	438007..438654	Mycobacterium bovis BCG str. Mexico	11808631
YP_005169838.1	CDS	BCGMEX_0367	NC_016804.1	438665	439444	D	Differs from Rv0359 by 1aa, T252A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative integral membrane protein	438665..439444	Mycobacterium bovis BCG str. Mexico	11808632
YP_005169839.1	CDS	BCGMEX_0368c	NC_016804.1	439449	439886	R	hypothetical protein	complement(439449..439886)	Mycobacterium bovis BCG str. Mexico	11808633
YP_005169840.1	CDS	BCGMEX_0369	NC_016804.1	439969	440796	D	hypothetical protein	439969..440796	Mycobacterium bovis BCG str. Mexico	11808634
YP_005169841.1	CDS	mgtE	NC_016804.1	441018	442400	D	Differs from Mb0362 by 1aa, V292A in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative Mg2+ transport transmembrane protein	441018..442400	Mycobacterium bovis BCG str. Mexico	11808635
YP_005169842.1	CDS	fba	NC_016804.1	442412	443446	R	Fructose-bisphosphate aldolase	complement(442412..443446)	Mycobacterium bovis BCG str. Mexico	11808636
YP_005169843.1	CDS	BCGMEX_0372	NC_016804.1	443542	444225	D	Differs from Rv0364 by 1aa, L193I in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	443542..444225	Mycobacterium bovis BCG str. Mexico	11808637
YP_005169844.1	CDS	BCGMEX_0373c	NC_016804.1	444214	445344	R	hypothetical protein	complement(444214..445344)	Mycobacterium bovis BCG str. Mexico	11808638
YP_005169845.1	CDS	BCGMEX_0374c	NC_016804.1	445369	445962	R	hypothetical protein	complement(445369..445962)	Mycobacterium bovis BCG str. Mexico	11808639
YP_005169846.1	CDS	BCGMEX_0375c	NC_016804.1	445991	446380	R	hypothetical protein	complement(445991..446380)	Mycobacterium bovis BCG str. Mexico	11808640
YP_005169847.1	CDS	BCGMEX_0376c	NC_016804.1	446461	447672	R	Differs from Rv0368c by 1aa, H249R, and from Mb0375c by 1aa, G371S in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(446461..447672)	Mycobacterium bovis BCG str. Mexico	11808641
YP_005169848.1	CDS	BCGMEX_0377c	NC_016804.1	447678	448193	R	putative membrane oxidoreductase	complement(447678..448193)	Mycobacterium bovis BCG str. Mexico	11808642
YP_005169849.1	CDS	BCGMEX_0378c	NC_016804.1	448294	449190	R	Differs from Rv0370c by 1aa, E201G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative oxidoreductase	complement(448294..449190)	Mycobacterium bovis BCG str. Mexico	11808643
YP_005169850.1	CDS	BCGMEX_0379c	NC_016804.1	449187	449780	R	hypothetical protein	complement(449187..449780)	Mycobacterium bovis BCG str. Mexico	11808644
YP_005169851.1	CDS	BCGMEX_0380c	NC_016804.1	449777	450532	R	Differs from Mb0379c by 1aa, G161S in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(449777..450532)	Mycobacterium bovis BCG str. Mexico	11808645
YP_005169852.1	CDS	BCGMEX_0381c	NC_016804.1	450551	452950	R	Differs from Rv0373c by 1aa, S122F in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative carbon monoxide dehydrogenase large chain	complement(450551..452950)	Mycobacterium bovis BCG str. Mexico	11808646
YP_005169853.1	CDS	BCGMEX_0382c	NC_016804.1	452947	453426	R	putative carbon monoxide dehydrogenase small chain	complement(452947..453426)	Mycobacterium bovis BCG str. Mexico	11808647
YP_005169854.1	CDS	BCGMEX_0383c	NC_016804.1	453441	454301	R	putative carbon monoxide dehydrogenase medium chain	complement(453441..454301)	Mycobacterium bovis BCG str. Mexico	11808648
YP_005169855.1	CDS	BCGMEX_0384c	NC_016804.1	454377	455519	R	hypothetical protein	complement(454377..455519)	Mycobacterium bovis BCG str. Mexico	11808649
YP_005169856.1	CDS	BCGMEX_0385	NC_016804.1	455568	456533	D	Differs from Rv0377 by 1aa, R302P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transcriptional regulatory protein	455568..456533	Mycobacterium bovis BCG str. Mexico	11808650
YP_005169857.1	CDS	BCGMEX_0386	NC_016804.1	456784	457005	D	putative glycine rich protein	456784..457005	Mycobacterium bovis BCG str. Mexico	11808651
YP_005169858.1	CDS	secE2	NC_016804.1	457124	457339	D	putative protein transport protein	457124..457339	Mycobacterium bovis BCG str. Mexico	11808652
YP_005169859.1	CDS	BCGMEX_0388c	NC_016804.1	457415	457966	R	putative RNA methyltransferase	complement(457415..457966)	Mycobacterium bovis BCG str. Mexico	11808653
YP_005169860.1	CDS	BCGMEX_0389c	NC_016804.1	458062	458970	R	hypothetical protein	complement(458062..458970)	Mycobacterium bovis BCG str. Mexico	11808654
YP_005169861.1	CDS	pyrE	NC_016804.1	458988	459527	R	orotate phosphoribosyltransferase	complement(458988..459527)	Mycobacterium bovis BCG str. Mexico	11808655
YP_005169862.1	CDS	BCGMEX_0391c	NC_016804.1	459608	460462	R	putative secreted protein	complement(459608..460462)	Mycobacterium bovis BCG str. Mexico	11808656
YP_005169863.1	CDS	clpB	NC_016804.1	460603	463149	R	chaperone protein clpB	complement(460603..463149)	Mycobacterium bovis BCG str. Mexico	11808657
YP_005169864.1	CDS	BCGMEX_0393	NC_016804.1	463282	464454	D	putative monooxygenase	463282..464454	Mycobacterium bovis BCG str. Mexico	11808658
YP_005169865.1	CDS	BCGMEX_0394	NC_016804.1	464558	467815	D	Differs from Mb0393 by 1aa, D902A in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transcriptional regulatory protein, LuxR family	464558..467815	Mycobacterium bovis BCG str. Mexico	11808659
YP_005169866.1	CDS	PPE9	NC_016804.1	467819	469150	R	In Mycobacterium tuberculosis strain H37Rv, Rv0388c and Rv0387c exist as 2 separate genes. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, 3 different base substitutions, the first of 14 bases, the second of 8 bases, and lastly of 28 bases, leads to a longer single product. Differs from Mb0394c by 1aa, T361A in BCG Pasteur, BCG Tokyo and BCG Mexico; PPE family protein	complement(467819..469150)	Mycobacterium bovis BCG str. Mexico	11808660
YP_005169867.1	CDS	purT	NC_016804.1	469484	470743	D	Differs from Rv0389 by 2aa, G8E, T332I in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; phosphoribosylglycinamide formyltransferase 2	469484..470743	Mycobacterium bovis BCG str. Mexico	11808661
YP_005169868.1	CDS	BCGMEX_0397	NC_016804.1	470740	471162	D	hypothetical protein	470740..471162	Mycobacterium bovis BCG str. Mexico	11808662
YP_005169869.1	CDS	metZ	NC_016804.1	471159	472379	D	O-succinylhomoserine sulfhydrylase	471159..472379	Mycobacterium bovis BCG str. Mexico	11808663
YP_005169870.1	CDS	ndhA	NC_016804.1	472376	473788	R	Differs from Rv0392c by 1aa, A241V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative membrane NADH dehydrogenase	complement(472376..473788)	Mycobacterium bovis BCG str. Mexico	11808664
YP_005169871.1	CDS	BCGMEX_0400	NC_016804.1	473930	475255	D	hypothetical protein	473930..475255	Mycobacterium bovis BCG str. Mexico	11808665
YP_005169872.1	CDS	BCGMEX_0401c	NC_016804.1	475271	475990	R	putative secreted protein	complement(475271..475990)	Mycobacterium bovis BCG str. Mexico	11808666
YP_005169873.1	CDS	BCGMEX_0402	NC_016804.1	476089	476493	D	Differs from Rv0395 by 1aa, A80V in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	476089..476493	Mycobacterium bovis BCG str. Mexico	11808667
YP_005169874.1	CDS	BCGMEX_0403	NC_016804.1	476499	476891	D	hypothetical protein	476499..476891	Mycobacterium bovis BCG str. Mexico	11808668
YP_005169875.1	CDS	BCGMEX_0404	NC_016804.1	476965	477333	D	hypothetical protein	476965..477333	Mycobacterium bovis BCG str. Mexico	11808669
YP_005169876.1	CDS	BCGMEX_0405	NC_016804.1	477543	477791	D	hypothetical protein	477543..477791	Mycobacterium bovis BCG str. Mexico	11808670
YP_005169877.1	CDS	BCGMEX_0406c	NC_016804.1	477828	478469	R	hypothetical protein	complement(477828..478469)	Mycobacterium bovis BCG str. Mexico	11808671
YP_005169878.1	CDS	lpqK	NC_016804.1	478476	479705	R	putative lipoprotein	complement(478476..479705)	Mycobacterium bovis BCG str. Mexico	11808672
YP_005169879.1	CDS	fadE7	NC_016804.1	479715	480902	R	putative acyl-CoA dehydrogenase	complement(479715..480902)	Mycobacterium bovis BCG str. Mexico	11808673
YP_005169880.1	CDS	BCGMEX_0409	NC_016804.1	480938	481309	D	transmembrane protein	480938..481309	Mycobacterium bovis BCG str. Mexico	11808674
YP_005169881.1	CDS	mmpL1b	NC_016804.1	481504	482607	R	In Mycobacterium tuberculosis strain H37Rv, mmpL1 exists as a single gene. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a frameshift due to a single base deletion splits mmpL1 into 2 parts, mmpL1a and mmpL1b; putative transmembrane transport protein	complement(481504..482607)	Mycobacterium bovis BCG str. Mexico	11808675
YP_005169882.1	CDS	mmpL1a	NC_016804.1	482604	484379	R	In Mycobacterium tuberculosis strain H37Rv, mmpL1 exists as a single gene. In Mycobacterium bovis, a frameshift due to a single base deletion splits mmpL1 into 2 parts, mmpL1a and mmpL1b. Differs from Rv0402c by 1aa, P451L in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane transport protein	complement(482604..484379)	Mycobacterium bovis BCG str. Mexico	11808676
YP_005169883.1	CDS	mmpS1	NC_016804.1	484376	484804	R	hypothetical protein	complement(484376..484804)	Mycobacterium bovis BCG str. Mexico	11808677
YP_005169884.1	CDS	fadD30	NC_016804.1	485125	486882	D	Differs from Mb0411 by 1aa, S300S, and from Rv0404 by 2aa, A88T, S300A in BCG Pasteur, BCG Tokyo and BCG Mexico; putative fatty-acid-CoA ligase	485125..486882	Mycobacterium bovis BCG str. Mexico	11808678
YP_005169885.1	CDS	pks6a	NC_016804.1	486879	488261	D	In Mycobacterium tuberculosis strain H37Rv, pks6 exists as a single gene. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a frameshift due to single base insertion splits pks6 into 2 parts,pks6a and pks6b; putative membrane bound polyketide synthase	486879..488261	Mycobacterium bovis BCG str. Mexico	11808679
YP_005169886.1	CDS	pks6b	NC_016804.1	488248	491088	D	In Mycobacterium tuberculosis strain H37Rv, pks6 exists as a single gene. In Mycobacterium bovis, a frameshift due to single base insertion, splits pks6 into 2 parts, pks6a and pks6b. Differs from Mb0413 by 1aa, M921V in BCG Pasteur, BCG Tokyo and BCG Mexico; putative membrane bound polyketide synthase	488248..491088	Mycobacterium bovis BCG str. Mexico	11808680
YP_005169887.1	CDS	BCGMEX_0416c	NC_016804.1	491036	491854	R	beta lactamase like protein	complement(491036..491854)	Mycobacterium bovis BCG str. Mexico	11808681
YP_005169888.1	CDS	fgd1	NC_016804.1	491932	492942	D	F420-dependent glucose-6-phosphate dehydrogenase	491932..492942	Mycobacterium bovis BCG str. Mexico	11808682
YP_005169889.1	CDS	pta	NC_016804.1	492935	495007	D	Differs from Rv0408 by 1aa, A102G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; phosphate acetyltransferase	492935..495007	Mycobacterium bovis BCG str. Mexico	11808683
YP_005169890.1	CDS	ackA	NC_016804.1	495000	496157	D	acetate kinase	495000..496157	Mycobacterium bovis BCG str. Mexico	11808684
YP_005169891.1	CDS	pknG	NC_016804.1	496211	498463	R	Serine/threonine protein kinase	complement(496211..498463)	Mycobacterium bovis BCG str. Mexico	11808685
YP_005169892.1	CDS	glnH	NC_016804.1	498463	499449	R	putative glutamine-binding lipoprotein	complement(498463..499449)	Mycobacterium bovis BCG str. Mexico	11808686
YP_005169893.1	CDS	BCGMEX_0422c	NC_016804.1	499449	500768	R	Differs from Rv0412c by 1aa, Y355D in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(499449..500768)	Mycobacterium bovis BCG str. Mexico	11808687
YP_005169894.1	CDS	mutT3	NC_016804.1	500862	501515	D	putative mutator mutT3 protein	500862..501515	Mycobacterium bovis BCG str. Mexico	11808688
YP_005169895.1	CDS	thiE	NC_016804.1	501499	502167	R	Thiamin-phosphate pyrophosphorylase	complement(501499..502167)	Mycobacterium bovis BCG str. Mexico	11808689
YP_005169896.1	CDS	thiO	NC_016804.1	502297	503319	D	Differs from Mb0423 by 1aa, A158V in Mycobacterium tuberculosis H37Rv, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Thiamine biosynthesis oxidoreductase	502297..503319	Mycobacterium bovis BCG str. Mexico	11808690
YP_005169897.1	CDS	thiS	NC_016804.1	503316	503522	D	Sulfur carrier protein	503316..503522	Mycobacterium bovis BCG str. Mexico	11808691
YP_005169898.1	CDS	thiG	NC_016804.1	503515	504273	D	Differs from Rv0417 by 1aa, C75S in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; thiazole synthase	503515..504273	Mycobacterium bovis BCG str. Mexico	11808692
YP_005169899.1	CDS	lpqL	NC_016804.1	504645	506147	D	putative lipoprotein aminopeptidase	504645..506147	Mycobacterium bovis BCG str. Mexico	11808693
YP_005169900.1	CDS	lpqM	NC_016804.1	506235	507731	D	Differs from Rv0419 by 2aa, T73A, T297A, and from Mb0427 by 1aa, T73A in BCG Pasteur, BCG Tokyo and BCG Mexico; putative lipoprotein peptidase	506235..507731	Mycobacterium bovis BCG str. Mexico	11808694
YP_005169901.1	CDS	BCGMEX_0430c	NC_016804.1	507710	508120	R	Differs from Mb0428c by 1aa, G21E in Mycobacterium tuberculosis, BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	complement(507710..508120)	Mycobacterium bovis BCG str. Mexico	11808695
YP_005169902.1	CDS	BCGMEX_0431c	NC_016804.1	508281	508910	R	hypothetical protein	complement(508281..508910)	Mycobacterium bovis BCG str. Mexico	11808696
YP_005169903.1	CDS	thiD	NC_016804.1	508907	509704	R	phosphomethylpyrimidine kinase	complement(508907..509704)	Mycobacterium bovis BCG str. Mexico	11808697
YP_005169904.1	CDS	thiC	NC_016804.1	509731	511374	R	Thiamin biosynthesis protein	complement(509731..511374)	Mycobacterium bovis BCG str. Mexico	11808698
YP_005169905.1	CDS	BCGMEX_0434c	NC_016804.1	511526	511801	R	hypothetical protein	complement(511526..511801)	Mycobacterium bovis BCG str. Mexico	11808699
YP_005169906.1	CDS	ctpH	NC_016804.1	511851	516470	R	Differs from Rv0425c by 1aa, A222E in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative metal cation transporting P-type ATPase	complement(511851..516470)	Mycobacterium bovis BCG str. Mexico	11808700
YP_005169907.1	CDS	BCGMEX_0436c	NC_016804.1	516522	516965	R	putative transmembrane protein	complement(516522..516965)	Mycobacterium bovis BCG str. Mexico	11808701
YP_005169908.1	CDS	xthA	NC_016804.1	517166	518041	R	Exodeoxyribonuclease III protein	complement(517166..518041)	Mycobacterium bovis BCG str. Mexico	11808702
YP_005169909.1	CDS	BCGMEX_0438c	NC_016804.1	518044	518952	R	Differs from Rv0428c by 1aa G149D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(518044..518952)	Mycobacterium bovis BCG str. Mexico	11808703
YP_005169910.1	CDS	def	NC_016804.1	518952	519545	R	Differs from Mb0437c by 1aa, A2T in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; peptide deformylase	complement(518952..519545)	Mycobacterium bovis BCG str. Mexico	11808704
YP_005169911.1	CDS	BCGMEX_0440	NC_016804.1	519882	520190	D	hypothetical protein	519882..520190	Mycobacterium bovis BCG str. Mexico	11808705
YP_005169912.1	CDS	BCGMEX_0441	NC_016804.1	520222	520716	D	Differs from Rv0431 by 2aa, G38V, A87T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative tuberculin related peptide	520222..520716	Mycobacterium bovis BCG str. Mexico	11808706
YP_005169913.1	CDS	sodC	NC_016804.1	520749	521471	D	Superoxide dismutase (Cu-Zn)	520749..521471	Mycobacterium bovis BCG str. Mexico	11808707
YP_005169914.1	CDS	BCGMEX_0443	NC_016804.1	521473	522603	D	carboxylate-amine ligase	521473..522603	Mycobacterium bovis BCG str. Mexico	11808708
YP_005169915.1	CDS	BCGMEX_0444	NC_016804.1	522660	523316	D	Differs from Rv0434 by 1aa, A190T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	522660..523316	Mycobacterium bovis BCG str. Mexico	11808709
YP_005169916.1	CDS	BCGMEX_0445c	NC_016804.1	523496	525682	R	putative ATPase	complement(523496..525682)	Mycobacterium bovis BCG str. Mexico	11808710
YP_005169917.1	CDS	pssA	NC_016804.1	525679	526539	R	Differs from Rv0436c by 1aa, V167G in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative CDP-diacylglycerol--serine O-phosphatidyltransferase	complement(525679..526539)	Mycobacterium bovis BCG str. Mexico	11808711
YP_005169918.1	CDS	psd	NC_016804.1	526536	527231	R	phosphatidylserine decarboxylase	complement(526536..527231)	Mycobacterium bovis BCG str. Mexico	11808712
YP_005169919.1	CDS	moeA2	NC_016804.1	527292	528509	R	Differs from Rv0438c by 1aa, I15M in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative molybdopterin biosynthesis protein	complement(527292..528509)	Mycobacterium bovis BCG str. Mexico	11808713
YP_005169920.1	CDS	BCGMEX_0449c	NC_016804.1	528528	529463	R	putative dehydrogenase/reductase	complement(528528..529463)	Mycobacterium bovis BCG str. Mexico	11808714
YP_005169921.1	CDS	groEL	NC_016804.1	529757	531379	D	60 kDa chaperonin 1	529757..531379	Mycobacterium bovis BCG str. Mexico	11808715
YP_005169922.1	CDS	BCGMEX_0451c	NC_016804.1	531445	531873	R	hypothetical protein	complement(531445..531873)	Mycobacterium bovis BCG str. Mexico	11808716
YP_005169923.1	CDS	PPE10	NC_016804.1	531900	533339	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a single base transition creates an in-frame stop at codon 8, leads to a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (479 aa versus 487 aa). Differs from Mb0450c by 1aa, T214K, and from Rv0442c by 2aa, E23K, T214K in BCG Pasteur, BCG Tokyo and BCG Mexico; PPE family protein	complement(531900..533339)	Mycobacterium bovis BCG str. Mexico	11808717
YP_005169924.1	CDS	BCGMEX_0453	NC_016804.1	533545	534060	D	hypothetical protein	533545..534060	Mycobacterium bovis BCG str. Mexico	11808718
YP_005169925.1	CDS	rskA	NC_016804.1	534240	534938	R	Differs from Rv0444c by 2aa, D107G, E184G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; disfunctional anti-sigma-K factor	complement(534240..534938)	Mycobacterium bovis BCG str. Mexico	11808719
YP_005169926.1	CDS	sigK	NC_016804.1	534982	535545	R	Differs from Rv0445c and Mb0453c by 1aa, I1M, due to c-t transition at position Equivalent to Mycobacterium tuberculosis strain H37Rv, 534394. Expression may be affected in Mycobacterium bovis BCG Pasteur and BCG Mexico (late strains).; RNA polymerase sigma factor	complement(534982..535545)	Mycobacterium bovis BCG str. Mexico	11808720
YP_005169927.1	CDS	BCGMEX_0456c	NC_016804.1	535594	536364	R	transmembrane protein	complement(535594..536364)	Mycobacterium bovis BCG str. Mexico	11808721
YP_005169928.1	CDS	ufaA1	NC_016804.1	536373	537656	R	putative cyclopropane-fatty-acyl-phospholipid synthase	complement(536373..537656)	Mycobacterium bovis BCG str. Mexico	11808722
YP_005169929.1	CDS	BCGMEX_0458c	NC_016804.1	537653	538318	R	hypothetical protein	complement(537653..538318)	Mycobacterium bovis BCG str. Mexico	11808723
YP_005169930.1	CDS	BCGMEX_0459c	NC_016804.1	538378	539697	R	hypothetical protein	complement(538378..539697)	Mycobacterium bovis BCG str. Mexico	11808724
YP_005169931.1	CDS	mmpL4	NC_016804.1	539737	542640	R	Differs from Mb0458c by 1aa, A314T in BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane transport protein	complement(539737..542640)	Mycobacterium bovis BCG str. Mexico	11808725
YP_005169932.1	CDS	mmpS4	NC_016804.1	542637	543059	R	hypothetical protein	complement(542637..543059)	Mycobacterium bovis BCG str. Mexico	11808726
YP_005169933.1	CDS	BCGMEX_0462	NC_016804.1	543291	544001	D	putative transcriptional regulatory protein, TetR family	543291..544001	Mycobacterium bovis BCG str. Mexico	11808727
YP_005169934.1	CDS	PPE11	NC_016804.1	544323	545879	D	PPE family protein	544323..545879	Mycobacterium bovis BCG str. Mexico	11808728
YP_005169935.1	CDS	BCGMEX_0464	NC_016804.1	545984	546334	D	hypothetical protein	545984..546334	Mycobacterium bovis BCG str. Mexico	11808729
YP_005169936.1	CDS	BCGMEX_0465c	NC_016804.1	546524	546970	R	hypothetical protein	complement(546524..546970)	Mycobacterium bovis BCG str. Mexico	11808730
YP_005169937.1	CDS	echA2	NC_016804.1	547038	547952	R	Enoyl-CoA hydratase	complement(547038..547952)	Mycobacterium bovis BCG str. Mexico	11808731
YP_005169938.1	CDS	BCGMEX_0467c	NC_016804.1	548225	548506	R	hypothetical protein	complement(548225..548506)	Mycobacterium bovis BCG str. Mexico	11808732
YP_005169939.1	CDS	BCGMEX_0468c	NC_016804.1	548735	550765	R	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a possible RBS upstream leads to an earlier start resulting in a slightly longer product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (676 aa versus 673 aa); putative peptidase	complement(548735..550765)	Mycobacterium bovis BCG str. Mexico	11808733
YP_005169940.1	CDS	BCGMEX_0469	NC_016804.1	550824	552347	D	putative aldehyde dehydrogenase	550824..552347	Mycobacterium bovis BCG str. Mexico	11808734
YP_005169941.1	CDS	BCGMEX_0470	NC_016804.1	552347	552838	D	hypothetical protein	552347..552838	Mycobacterium bovis BCG str. Mexico	11808735
YP_005169942.1	CDS	BCGMEX_0471	NC_016804.1	552898	553137	D	hypothetical protein	552898..553137	Mycobacterium bovis BCG str. Mexico	11808736
YP_005169943.1	CDS	BCGMEX_0472	NC_016804.1	553175	553699	D	putative transmembrane protein	553175..553699	Mycobacterium bovis BCG str. Mexico	11808737
YP_005169944.1	CDS	lpd	NC_016804.1	553763	555157	D	dihydrolipoamide dehydrogenase	553763..555157	Mycobacterium bovis BCG str. Mexico	11808738
YP_005169945.1	CDS	BCGMEX_0474	NC_016804.1	555165	555458	D	hypothetical protein	555165..555458	Mycobacterium bovis BCG str. Mexico	11808739
YP_005169946.1	CDS	BCGMEX_0475c	NC_016804.1	555462	556034	R	hypothetical protein	complement(555462..556034)	Mycobacterium bovis BCG str. Mexico	11808740
YP_005169947.1	CDS	BCGMEX_0476c	NC_016804.1	556031	557455	R	Differs from Rv0465c by 2aa, D36N, R106C, and from Mb0474c by 1aa, R326Q in BCG Pasteur, BCG Tokyo and BCG Mexico; putative transcriptional regulatory protein	complement(556031..557455)	Mycobacterium bovis BCG str. Mexico	11808741
YP_005169948.1	CDS	BCGMEX_0477	NC_016804.1	557607	558401	D	hypothetical protein	557607..558401	Mycobacterium bovis BCG str. Mexico	11808742
YP_005169949.1	CDS	icl	NC_016804.1	558676	559962	D	isocitrate lyase	558676..559962	Mycobacterium bovis BCG str. Mexico	11808743
YP_005169950.1	CDS	fadB2	NC_016804.1	560044	560904	D	3-hydroxybutyryl-CoA dehydrogenase	560044..560904	Mycobacterium bovis BCG str. Mexico	11808744
YP_005169951.1	CDS	umaA1	NC_016804.1	561037	561897	D	putative mycolic acid synthase	561037..561897	Mycobacterium bovis BCG str. Mexico	11808745
YP_005169952.1	CDS	pcaA	NC_016804.1	561997	562860	R	Mycolic acid synthase	complement(561997..562860)	Mycobacterium bovis BCG str. Mexico	11808746
YP_005169953.1	CDS	BCGMEX_0482c	NC_016804.1	563003	563443	R	hypothetical protein	complement(563003..563443)	Mycobacterium bovis BCG str. Mexico	11808747
YP_005169954.1	CDS	BCGMEX_0483c	NC_016804.1	563374	563862	R	hypothetical protein	complement(563374..563862)	Mycobacterium bovis BCG str. Mexico	11808748
YP_005169955.1	CDS	BCGMEX_0484c	NC_016804.1	563872	564576	R	Differs from Rv0472c and Mb0482c by 1aa, D162G in BCG Pasteur, BCG Tokyo and BCG Mexico; putative transcriptional regulatory protein, TetR family	complement(563872..564576)	Mycobacterium bovis BCG str. Mexico	11808749
YP_005169956.1	CDS	BCGMEX_0485	NC_016804.1	564716	566083	D	Differs from Rv0473 by 1aa, R5K in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; transmembrane protein	564716..566083	Mycobacterium bovis BCG str. Mexico	11808750
YP_005169957.1	CDS	BCGMEX_0486	NC_016804.1	566170	566592	D	putative transcriptional regulatory protein	566170..566592	Mycobacterium bovis BCG str. Mexico	11808751
YP_005169958.1	CDS	hbhA	NC_016804.1	566946	567545	D	heparin-binding hemagglutinin	566946..567545	Mycobacterium bovis BCG str. Mexico	11808752
YP_005169959.1	CDS	BCGMEX_0488	NC_016804.1	567657	567920	D	putative transmembrane protein	567657..567920	Mycobacterium bovis BCG str. Mexico	11808753
YP_005169960.1	CDS	BCGMEX_0489	NC_016804.1	567925	568371	D	putative secreted protein	567925..568371	Mycobacterium bovis BCG str. Mexico	11808754
YP_005169961.1	CDS	deoC	NC_016804.1	568371	569045	D	Deoxyribose-phosphate aldolase	568371..569045	Mycobacterium bovis BCG str. Mexico	11808755
YP_005169962.1	CDS	BCGMEX_0491c	NC_016804.1	569070	570116	R	hypothetical protein	complement(569070..570116)	Mycobacterium bovis BCG str. Mexico	11808756
YP_005169963.1	CDS	BCGMEX_0492c	NC_016804.1	570113	571048	R	In Mycobacterium bovis, a 56 bp deletion results in a different NH2 part and leads to a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (311 aa versus 340 aa); hypothetical protein	complement(570113..571048)	Mycobacterium bovis BCG str. Mexico	11808757
YP_005169964.1	CDS	BCGMEX_0493c	NC_016804.1	571081	571605	R	hypothetical protein	complement(571081..571605)	Mycobacterium bovis BCG str. Mexico	11808758
YP_005169965.1	CDS	murB	NC_016804.1	571632	572741	D	UDP-N-acetylenolpyruvoylglucosamine reductase	571632..572741	Mycobacterium bovis BCG str. Mexico	11808759
YP_005169966.1	CDS	lprQ	NC_016804.1	572803	574158	D	putative lipoprotein	572803..574158	Mycobacterium bovis BCG str. Mexico	11808760
YP_005169967.1	CDS	BCGMEX_0496c	NC_016804.1	574139	574894	R	Differs from Rv0484c by 1aa, L140I in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Short chain type oxidoreductase	complement(574139..574894)	Mycobacterium bovis BCG str. Mexico	11808761
YP_005169968.1	CDS	BCGMEX_0497	NC_016804.1	575077	576393	D	putative transcriptional regulatory protein	575077..576393	Mycobacterium bovis BCG str. Mexico	11808762
YP_005169969.1	CDS	BCGMEX_0498	NC_016804.1	576441	577883	D	putative glycosyltransferase	576441..577883	Mycobacterium bovis BCG str. Mexico	11808763
YP_005169970.1	CDS	BCGMEX_0499	NC_016804.1	577880	578431	D	hypothetical protein	577880..578431	Mycobacterium bovis BCG str. Mexico	11808764
YP_005169971.1	CDS	BCGMEX_0500	NC_016804.1	578873	579478	D	putative amino-acid transporter	578873..579478	Mycobacterium bovis BCG str. Mexico	11808765
YP_005169972.1	CDS	gpmA	NC_016804.1	579635	580384	D	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	579635..580384	Mycobacterium bovis BCG str. Mexico	11808766
YP_005169973.1	CDS	senX3	NC_016804.1	580558	581790	D	Differs from Rv0490 and Mb0500 by 1aa, S109F in BCG Pasteur, BCG Tokio and BCG Mexico; Sensor-like histidine kinase	580558..581790	Mycobacterium bovis BCG str. Mexico	11808767
YP_005169974.1	CDS	regX3	NC_016804.1	581941	582624	D	Differs from Rv0491 and Mb0501 by 1aa, T18A in BCG Pasteur and BCG Mexico, by 2aa, T18A, C219R in BCG Tokyo; Sensory transduction protein	581941..582624	Mycobacterium bovis BCG str. Mexico	11808768
YP_005169975.1	CDS	BCGMEX_0504c	NC_016804.1	582621	584510	R	Differs from Rv0492c by 1aa, F520L in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative oxidoreductase GMC-type	complement(582621..584510)	Mycobacterium bovis BCG str. Mexico	11808769
YP_005169976.1	CDS	BCGMEX_0505c	NC_016804.1	584507	584836	R	hypothetical protein	complement(584507..584836)	Mycobacterium bovis BCG str. Mexico	11808770
YP_005169977.1	CDS	BCGMEX_0506c	NC_016804.1	584833	585822	R	Differs from Rv0493c by 1aa, G174S in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico. Also differs from Rv0493c by 1aa, S101G in BCG Mexico; hypothetical protein	complement(584833..585822)	Mycobacterium bovis BCG str. Mexico	11808771
YP_005169978.1	CDS	BCGMEX_0507	NC_016804.1	585827	586555	D	putative transcriptional regulatory protein, GntR family	585827..586555	Mycobacterium bovis BCG str. Mexico	11808772
YP_005169979.1	CDS	BCGMEX_0508c	NC_016804.1	586556	587446	R	hypothetical protein	complement(586556..587446)	Mycobacterium bovis BCG str. Mexico	11808773
YP_005169980.1	CDS	BCGMEX_0509	NC_016804.1	587478	588512	D	hypothetical protein	587478..588512	Mycobacterium bovis BCG str. Mexico	11808774
YP_005169981.1	CDS	BCGMEX_0510	NC_016804.1	588509	589441	D	putative transmembrane protein	588509..589441	Mycobacterium bovis BCG str. Mexico	11808775
YP_005169982.1	CDS	BCGMEX_0511	NC_016804.1	589457	590299	D	hypothetical protein	589457..590299	Mycobacterium bovis BCG str. Mexico	11808776
YP_005169983.1	CDS	BCGMEX_0512	NC_016804.1	590315	591190	D	hypothetical protein	590315..591190	Mycobacterium bovis BCG str. Mexico	11808777
YP_005169984.1	CDS	proC	NC_016804.1	591215	592102	D	Differs from Rv0500 by 1aa, D227E in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Pyrroline-5-carboxylate reductase	591215..592102	Mycobacterium bovis BCG str. Mexico	11808778
YP_005169985.1	CDS	BCGMEX_0514	NC_016804.1	592243	592479	D	hypothetical protein	592243..592479	Mycobacterium bovis BCG str. Mexico	11808779
YP_005169986.1	CDS	galE2	NC_016804.1	592786	593916	D	putative UDP-glucose 4-epimerase	592786..593916	Mycobacterium bovis BCG str. Mexico	11808780
YP_005169987.1	CDS	BCGMEX_0516	NC_016804.1	593923	594999	D	hypothetical protein	593923..594999	Mycobacterium bovis BCG str. Mexico	11808781
YP_005169988.1	CDS	cmaA2	NC_016804.1	595003	595911	R	cyclopropane-fatty-acyl-phospholipid synthase 2	complement(595003..595911)	Mycobacterium bovis BCG str. Mexico	11808782
YP_005169989.1	CDS	BCGMEX_0518c	NC_016804.1	595934	596434	R	hypothetical protein	complement(595934..596434)	Mycobacterium bovis BCG str. Mexico	11808783
YP_005169990.1	CDS	serB1	NC_016804.1	596596	597519	R	putative phosphoserine phosphatase	complement(596596..597519)	Mycobacterium bovis BCG str. Mexico	11808784
YP_005169991.1	CDS	mmpS2	NC_016804.1	597891	598334	D	hypothetical protein	597891..598334	Mycobacterium bovis BCG str. Mexico	11808785
YP_005169992.1	CDS	mmpL2	NC_016804.1	598331	601237	D	Differs from Mb0519 by 1aa, D119H, and from Rv0507 by 3aa, H426R, Y509D, C722S in BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane transport protein	598331..601237	Mycobacterium bovis BCG str. Mexico	11808786
YP_005169993.1	CDS	BCGMEX_0522	NC_016804.1	601230	601523	D	hypothetical protein	601230..601523	Mycobacterium bovis BCG str. Mexico	11808787
YP_005169994.1	CDS	hemA	NC_016804.1	601573	602979	D	glutamyl-tRNA reductase	601573..602979	Mycobacterium bovis BCG str. Mexico	11808788
YP_005169995.1	CDS	hemC	NC_016804.1	602989	603918	D	porphobilinogen deaminase	602989..603918	Mycobacterium bovis BCG str. Mexico	11808789
YP_005169996.1	CDS	hemD	NC_016804.1	603951	605648	D	Uroporphyrinogen-III methyltransferase	603951..605648	Mycobacterium bovis BCG str. Mexico	11808790
YP_005169997.1	CDS	hemB	NC_016804.1	605734	606723	D	Differs from Rv0512 by 1aa, G246E in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Delta-aminolevulinic acid dehydratase	605734..606723	Mycobacterium bovis BCG str. Mexico	11808791
YP_005169998.1	CDS	BCGMEX_0527	NC_016804.1	606736	607284	D	putative transmembrane protein	606736..607284	Mycobacterium bovis BCG str. Mexico	11808792
YP_005169999.1	CDS	BCGMEX_0528	NC_016804.1	607281	607580	D	Differs from Mb0527 and Rv0514 by 1aa, G23A in BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	607281..607580	Mycobacterium bovis BCG str. Mexico	11808793
YP_005170000.1	CDS	BCGMEX_0529	NC_016804.1	607683	609194	D	hypothetical protein	607683..609194	Mycobacterium bovis BCG str. Mexico	11808794
YP_005170001.1	CDS	BCGMEX_0530c	NC_016804.1	609191	609667	R	hypothetical protein	complement(609191..609667)	Mycobacterium bovis BCG str. Mexico	11808795
YP_005170002.1	CDS	BCGMEX_0531	NC_016804.1	609878	611188	D	Differs from Rv0517 by 1aa, G394D in BCG Pasteur, BCG Tokyo and BCG Mexico; putative acyltransferase	609878..611188	Mycobacterium bovis BCG str. Mexico	11808796
YP_005170003.1	CDS	BCGMEX_0532	NC_016804.1	611320	612015	D	hypothetical protein	611320..612015	Mycobacterium bovis BCG str. Mexico	11808797
YP_005170004.1	CDS	BCGMEX_0533c	NC_016804.1	612304	613206	R	membrane protein	complement(612304..613206)	Mycobacterium bovis BCG str. Mexico	11808798
YP_005170005.1	CDS	BCGMEX_0534	NC_016804.1	613387	613737	D	putative methyltransferase/methylase	613387..613737	Mycobacterium bovis BCG str. Mexico	11808799
YP_005170006.1	CDS	BCGMEX_0535	NC_016804.1	613730	614035	D	putative methyltransferase/methylase	613730..614035	Mycobacterium bovis BCG str. Mexico	11808800
YP_005170007.1	CDS	gabP	NC_016804.1	614170	615474	D	GabA permease	614170..615474	Mycobacterium bovis BCG str. Mexico	11808801
YP_005170008.1	CDS	BCGMEX_0537c	NC_016804.1	615458	615853	R	hypothetical protein	complement(615458..615853)	Mycobacterium bovis BCG str. Mexico	11808802
YP_005170009.1	CDS	hemL	NC_016804.1	615967	617355	D	putative glutamate-1-semialdehyde aminotransferase	615967..617355	Mycobacterium bovis BCG str. Mexico	11808803
YP_005170010.1	CDS	BCGMEX_0539	NC_016804.1	617355	617963	D	hypothetical protein	617355..617963	Mycobacterium bovis BCG str. Mexico	11808804
YP_005170011.1	CDS	BCGMEX_0540	NC_016804.1	617978	618628	D	putative thioredoxin protein	617978..618628	Mycobacterium bovis BCG str. Mexico	11808805
YP_005170012.1	CDS	ccdA	NC_016804.1	618625	619404	D	cytochrome C biogenesis protein	618625..619404	Mycobacterium bovis BCG str. Mexico	11808806
YP_005170013.1	CDS	BCGMEX_0542	NC_016804.1	619437	621026	D	putative transmembrane protein	619437..621026	Mycobacterium bovis BCG str. Mexico	11808807
YP_005170014.1	CDS	ccsA	NC_016804.1	621023	621997	D	cytochrome c-type biogenesis protein	621023..621997	Mycobacterium bovis BCG str. Mexico	11808808
YP_005170015.1	CDS	BCGMEX_0544	NC_016804.1	622039	623256	D	hypothetical protein	622039..623256	Mycobacterium bovis BCG str. Mexico	11808809
YP_005170016.1	CDS	BCGMEX_0545	NC_016804.1	623461	623778	D	hypothetical protein	623461..623778	Mycobacterium bovis BCG str. Mexico	11808810
YP_005170017.1	CDS	PE_PGRS6a	NC_016804.1	623925	625670	D	In Mycobacterium tuberculosis strain H37Rv, PE_PGRS6 exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a single base insertion splits PE_PGRS6 into 2 parts, PE_PGRS6a and PE_PGRS6b, resulting in PE_PGRS6a having a different COOH part. There is also a 84 bp and a 9 bp insertion in PE_PGRS6a; PE-PGRS family protein	623925..625670	Mycobacterium bovis BCG str. Mexico	11808811
YP_005170018.1	CDS	fabH	NC_016804.1	625699	626706	R	3-oxoacyl-(acyl-carrier-protein) synthase III	complement(625699..626706)	Mycobacterium bovis BCG str. Mexico	11808813
YP_005170019.1	CDS	menA	NC_016804.1	626788	627666	R	1,4-dihydroxy-2-naphthoate octaprenyltransferase	complement(626788..627666)	Mycobacterium bovis BCG str. Mexico	11808814
YP_005170020.1	CDS	pnp	NC_016804.1	627683	628477	D	5'-methylthioadenosine phosphorylase	627683..628477	Mycobacterium bovis BCG str. Mexico	11808815
YP_005170021.1	CDS	galE3	NC_016804.1	628474	629514	D	UDP-glucose 4-epimerase	628474..629514	Mycobacterium bovis BCG str. Mexico	11808816
YP_005170022.1	CDS	BCGMEX_0552c	NC_016804.1	629524	630957	R	putative integral membrane protein	complement(629524..630957)	Mycobacterium bovis BCG str. Mexico	11808817
YP_005170023.1	CDS	BCGMEX_0553	NC_016804.1	631266	632912	D	Differs from Rv0538 by 1aa, P228R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	631266..632912	Mycobacterium bovis BCG str. Mexico	11808818
YP_005170024.1	CDS	BCGMEX_0554	NC_016804.1	632969	633601	D	putative glycosyltransferase	632969..633601	Mycobacterium bovis BCG str. Mexico	11808819
YP_005170025.1	CDS	BCGMEX_0555	NC_016804.1	633598	634260	D	hypothetical protein	633598..634260	Mycobacterium bovis BCG str. Mexico	11808820
YP_005170026.1	CDS	BCGMEX_0556c	NC_016804.1	634281	635630	R	Differs from Rv0541c by 1aa, V226I in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative integral membrane protein	complement(634281..635630)	Mycobacterium bovis BCG str. Mexico	11808821
YP_005170027.1	CDS	menE	NC_016804.1	635642	636730	R	putative O-succinylbenzoic acid--CoA ligase	complement(635642..636730)	Mycobacterium bovis BCG str. Mexico	11808822
YP_005170028.1	CDS	BCGMEX_0558c	NC_016804.1	636799	637101	R	hypothetical protein	complement(636799..637101)	Mycobacterium bovis BCG str. Mexico	11808823
YP_005170029.1	CDS	BCGMEX_0559c	NC_016804.1	637161	637439	R	transmembrane protein	complement(637161..637439)	Mycobacterium bovis BCG str. Mexico	11808824
YP_005170030.1	CDS	pitA	NC_016804.1	637436	638689	R	Differs from Rv0545c by 1aa, S49P in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative low-affinity inorganic phosphate transporter	complement(637436..638689)	Mycobacterium bovis BCG str. Mexico	11808825
YP_005170031.1	CDS	BCGMEX_0561c	NC_016804.1	638809	639195	R	hypothetical protein	complement(638809..639195)	Mycobacterium bovis BCG str. Mexico	11808826
YP_005170032.1	CDS	BCGMEX_0562c	NC_016804.1	639258	640142	R	putative oxidoreductase	complement(639258..640142)	Mycobacterium bovis BCG str. Mexico	11808827
YP_005170033.1	CDS	menB	NC_016804.1	640238	641182	R	Naphthoate synthase	complement(640238..641182)	Mycobacterium bovis BCG str. Mexico	11808828
YP_005170034.1	CDS	BCGMEX_0565c	NC_016804.1	641558	641866	R	In Mycobacterium tuberculosis strain H37Rv, Rv0549c exists as a single gene. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a frameshift due to a single base deletion, splits Rv0549c into 2 parts; hypothetical protein	complement(641558..641866)	Mycobacterium bovis BCG str. Mexico	11808830
YP_005170035.1	CDS	BCGMEX_0566c	NC_016804.1	641863	642129	R	hypothetical protein	complement(641863..642129)	Mycobacterium bovis BCG str. Mexico	11808831
YP_005170036.1	CDS	fadD8	NC_016804.1	642321	644036	R	putative fatty-acid-CoA ligase	complement(642321..644036)	Mycobacterium bovis BCG str. Mexico	11808832
YP_005170037.1	CDS	BCGMEX_0568	NC_016804.1	644114	645718	D	Differs from Rv0552 and Mb0567 by 1aa, T144I in Mycobacterium bovis BCG Pasteur and BCG Mexico; hypothetical protein	644114..645718	Mycobacterium bovis BCG str. Mexico	11808833
YP_005170038.1	CDS	menC	NC_016804.1	645715	646695	D	O-succinylbenzoate synthase	645715..646695	Mycobacterium bovis BCG str. Mexico	11808834
YP_005170039.1	CDS	bpoC	NC_016804.1	646692	647480	D	putative peroxidase	646692..647480	Mycobacterium bovis BCG str. Mexico	11808835
YP_005170040.1	CDS	menD	NC_016804.1	647523	649187	D	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase	647523..649187	Mycobacterium bovis BCG str. Mexico	11808836
YP_005170041.1	CDS	BCGMEX_0572	NC_016804.1	649184	649699	D	Differs from Rv0556 by 1aa, R15L in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	649184..649699	Mycobacterium bovis BCG str. Mexico	11808837
YP_005170042.1	CDS	pimB	NC_016804.1	649761	650897	D	Mannosyltransferase	649761..650897	Mycobacterium bovis BCG str. Mexico	11808838
YP_005170043.1	CDS	ubiE	NC_016804.1	650914	651618	D	Ubiquinone/menaquinone biosynthesis methyltransferase	650914..651618	Mycobacterium bovis BCG str. Mexico	11808839
YP_005170044.1	CDS	BCGMEX_0575c	NC_016804.1	651632	651970	R	putative secreted protein	complement(651632..651970)	Mycobacterium bovis BCG str. Mexico	11808840
YP_005170045.1	CDS	BCGMEX_0576c	NC_016804.1	652004	652729	R	putative benzoquinone methyltransferase	complement(652004..652729)	Mycobacterium bovis BCG str. Mexico	11808841
YP_005170046.1	CDS	BCGMEX_0577c	NC_016804.1	652754	653980	R	putative oxidoreductase	complement(652754..653980)	Mycobacterium bovis BCG str. Mexico	11808842
YP_005170047.1	CDS	grcC1	NC_016804.1	653996	655003	D	putative polyprenyl-diphosphate synthase	653996..655003	Mycobacterium bovis BCG str. Mexico	11808843
YP_005170048.1	CDS	htpX	NC_016804.1	655104	655964	D	putative protease htpX-like protein	655104..655964	Mycobacterium bovis BCG str. Mexico	11808844
YP_005170049.1	CDS	gpdA1	NC_016804.1	656149	657174	R	glycerol-3-phosphate dehydrogenase 2(NAD(P)+)	complement(656149..657174)	Mycobacterium bovis BCG str. Mexico	11808845
YP_005170050.1	CDS	BCGMEX_0581c	NC_016804.1	657235	658695	R	putative monooxygenase	complement(657235..658695)	Mycobacterium bovis BCG str. Mexico	11808846
YP_005170051.1	CDS	BCGMEX_0582c	NC_016804.1	658773	659264	R	hypothetical protein	complement(658773..659264)	Mycobacterium bovis BCG str. Mexico	11808847
YP_005170052.1	CDS	BCGMEX_0583	NC_016804.1	659546	660565	D	Differs from Rv0567 by 1aa, L201F in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative methyltransferase/methylase	659546..660565	Mycobacterium bovis BCG str. Mexico	11808849
YP_005170053.1	CDS	cyp135B1	NC_016804.1	660675	662093	D	Differs from Rv0568 and Mb0583 by 1aa, E120G in BCG Pasteur, BCG Tokyo and BCG Mexico; putative cytochrome P450 135B1	660675..662093	Mycobacterium bovis BCG str. Mexico	11808850
YP_005170054.1	CDS	BCGMEX_0585	NC_016804.1	662228	662494	D	hypothetical protein	662228..662494	Mycobacterium bovis BCG str. Mexico	11808851
YP_005170055.1	CDS	nrdZ	NC_016804.1	662520	664652	D	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a frameshift due to a single base deletion leads to a product with a different COOH part compared to its homolog in Mycobacterium tuberculosis strain H37Rv; ribonucleoside-diphosphate reductase	662520..664652	Mycobacterium bovis BCG str. Mexico	11808852
YP_005170056.1	CDS	BCGMEX_0587c	NC_016804.1	664711	666042	R	Differs from Rv0571c and Mb0586c by 1aa, L258F in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(664711..666042)	Mycobacterium bovis BCG str. Mexico	11808853
YP_005170057.1	CDS	BCGMEX_0588c	NC_016804.1	666266	666607	R	Differs from Rv0572c by 1aa, L31F in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(666266..666607)	Mycobacterium bovis BCG str. Mexico	11808854
YP_005170058.1	CDS	pncB2	NC_016804.1	667075	668466	R	nicotinate phosphoribosyltransferase	complement(667075..668466)	Mycobacterium bovis BCG str. Mexico	11808855
YP_005170059.1	CDS	BCGMEX_0590c	NC_016804.1	668476	669618	R	Differs from Rv0574c by 1aa, K4N in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(668476..669618)	Mycobacterium bovis BCG str. Mexico	11808856
YP_005170060.1	CDS	BCGMEX_0591c	NC_016804.1	669834	670970	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a frameshift due to a single base insertion leads to a shorter product with a different COOH part compared to its homolog in Mycobacterium tuberculosis strain H37Rv; putative oxidoreductase	complement(669834..670970)	Mycobacterium bovis BCG str. Mexico	11808857
YP_005170061.1	CDS	BCGMEX_0592	NC_016804.1	671073	672377	D	Differs from Rv0576 by 1aa, H233R in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; putative transcriptional regulatory protein, ArsR family	671073..672377	Mycobacterium bovis BCG str. Mexico	11808858
YP_005170062.1	CDS	cfp30B	NC_016804.1	672391	673176	D	putative 27 kDa antigen	672391..673176	Mycobacterium bovis BCG str. Mexico	11808859
YP_005170063.1	CDS	PE_PGRS7	NC_016804.1	673221	677132	R	Differs from Rv0578c and from Mb0593c by 3aa, there are deleted in Mycobacterium bovis BCG Pasteur and BCG Mexico; PE-PGRS family protein	complement(673221..677132)	Mycobacterium bovis BCG str. Mexico	11808860
YP_005170064.1	CDS	BCGMEX_0595	NC_016804.1	677454	678212	D	hypothetical protein	677454..678212	Mycobacterium bovis BCG str. Mexico	11808861
YP_005170065.1	CDS	BCGMEX_0596c	NC_016804.1	678341	678832	R	hypothetical protein	complement(678341..678832)	Mycobacterium bovis BCG str. Mexico	11808862
YP_005170066.1	CDS	BCGMEX_0597	NC_016804.1	678926	679141	D	hypothetical protein	678926..679141	Mycobacterium bovis BCG str. Mexico	11808863
YP_005170067.1	CDS	BCGMEX_0598	NC_016804.1	679138	679545	D	hypothetical protein	679138..679545	Mycobacterium bovis BCG str. Mexico	11808864
YP_005170068.1	CDS	lpqN	NC_016804.1	679605	680291	R	putative lipoprotein	complement(679605..680291)	Mycobacterium bovis BCG str. Mexico	11808865
YP_005170069.1	CDS	BCGMEX_0600	NC_016804.1	680445	683078	D	Differs from Rv0584 by 1aa G90D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	680445..683078	Mycobacterium bovis BCG str. Mexico	11808866
YP_005170070.1	CDS	BCGMEX_0601c	NC_016804.1	683101	685488	R	Differs from Rv0585c by 1aa V438I and from Mb0600c by 2aa M150I and V438I in BCG Pasteur, BCG Tokyo and BCG Mexico; putative integral membrane protein	complement(683101..685488)	Mycobacterium bovis BCG str. Mexico	11808867
YP_005170071.1	CDS	BCGMEX_0602	NC_016804.1	685626	686348	D	putative transcriptional regulatory protein, GntR family	685626..686348	Mycobacterium bovis BCG str. Mexico	11808868
YP_005170072.1	CDS	yrbE2A	NC_016804.1	686345	687142	D	putative integral membrane protein	686345..687142	Mycobacterium bovis BCG str. Mexico	11808869
YP_005170073.1	CDS	yrbE2B	NC_016804.1	687144	688031	D	putative integral membrane protein	687144..688031	Mycobacterium bovis BCG str. Mexico	11808870
YP_005170074.1	CDS	mce2A	NC_016804.1	688037	689251	D	Differs from Rv0589 by 1aa S51F in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; MCE-family protein	688037..689251	Mycobacterium bovis BCG str. Mexico	11808871
YP_005170075.1	CDS	mce2B	NC_016804.1	689248	690279	D	In Mycobacterium tuberculosis strain H37Rv, mce2B and Rv0590A are 2 genes, most likely to be linked. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, an in-frame insertion of a single base leads to a single product; MCE-family protein	689248..690279	Mycobacterium bovis BCG str. Mexico	11808872
YP_005170076.1	CDS	mce2C	NC_016804.1	690276	691721	D	Differs from Rv0591 by 2aa M49T and N398T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo  and BCG Mexico; MCE-family protein	690276..691721	Mycobacterium bovis BCG str. Mexico	11808873
YP_005170077.1	CDS	mce2Da	NC_016804.1	691718	693268	D	In Mycobacterium tuberculosis strain H37Rv, mce2D exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift occurs in a strech of C (7 for H37Rv, 8 for Mycobactrium bovis and 9 for Mycobacterium bovis BCG). This leads to mceDa genes with different COOH parts and a remnant mc2Db pseudogene; MCE-family protein	691718..693268	Mycobacterium bovis BCG str. Mexico	11808874
YP_005170078.1	CDS	lprL	NC_016804.1	693243	694451	D	In Mycobacterium bovis, a single base transition introducing a stop codon, leads to the formation of a truncated product compared to its homolog in Mycobacterium tuberculosis strain H37Rv, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico (188 aa versus 402 aa); putative MCE-family lipoprotein	693243..694451	Mycobacterium bovis BCG str. Mexico	11808875
YP_005170079.1	CDS	mce2F	NC_016804.1	694456	696006	D	MCE-family protein	694456..696006	Mycobacterium bovis BCG str. Mexico	11808876
YP_005170080.1	CDS	BCGMEX_0611c	NC_016804.1	696058	696450	R	hypothetical protein	complement(696058..696450)	Mycobacterium bovis BCG str. Mexico	11808877
YP_005170081.1	CDS	BCGMEX_0612c	NC_016804.1	696447	696704	R	hypothetical protein	complement(696447..696704)	Mycobacterium bovis BCG str. Mexico	11808878
YP_005170082.1	CDS	BCGMEX_0613c	NC_016804.1	696887	698122	R	hypothetical protein	complement(696887..698122)	Mycobacterium bovis BCG str. Mexico	11808879
YP_005170083.1	CDS	BCGMEX_0614c	NC_016804.1	698373	698786	R	hypothetical protein	complement(698373..698786)	Mycobacterium bovis BCG str. Mexico	11808880
YP_005170084.1	CDS	BCGMEX_0615c	NC_016804.1	698783	699019	R	hypothetical protein	complement(698783..699019)	Mycobacterium bovis BCG str. Mexico	11808881
YP_005170085.1	CDS	BCGMEX_0616c	NC_016804.1	699123	699629	R	Second part; putative two component sensor kinase	complement(699123..699629)	Mycobacterium bovis BCG str. Mexico	11808882
YP_005170086.1	CDS	BCGMEX_0617c	NC_016804.1	699743	700213	R	First part; putative two component sensor kinase	complement(699743..700213)	Mycobacterium bovis BCG str. Mexico	11808883
YP_005170087.1	CDS	tcrA	NC_016804.1	700257	701018	R	Differs from Rv0602c by 1aa I28V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative two component DNA binding transcriptional regulatory protein	complement(700257..701018)	Mycobacterium bovis BCG str. Mexico	11808884
YP_005170088.1	CDS	BCGMEX_0619	NC_016804.1	701075	701386	D	Differs from Mb0619 by 2aa P77A and E96K in Mycobacterium tuberculosis, BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	701075..701386	Mycobacterium bovis BCG str. Mexico	11808885
YP_005170089.1	CDS	lpqO	NC_016804.1	701458	702408	D	Differs from Rv0604 by 1aa P180S in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	701458..702408	Mycobacterium bovis BCG str. Mexico	11808886
YP_005170090.1	CDS	BCGMEX_0621	NC_016804.1	702625	703233	D	putative resolvase	702625..703233	Mycobacterium bovis BCG str. Mexico	11808887
YP_005170091.1	CDS	BCGMEX_0622	NC_016804.1	703235	703978	D	putative transposase	703235..703978	Mycobacterium bovis BCG str. Mexico	11808888
YP_005170092.1	CDS	BCGMEX_0623	NC_016804.1	704032	704418	D	hypothetical protein	704032..704418	Mycobacterium bovis BCG str. Mexico	11808889
YP_005170093.1	CDS	BCGMEX_0624	NC_016804.1	704463	704708	D	hypothetical protein	704463..704708	Mycobacterium bovis BCG str. Mexico	11808890
YP_005170094.1	CDS	BCGMEX_0625	NC_016804.1	704705	705106	D	hypothetical protein	704705..705106	Mycobacterium bovis BCG str. Mexico	11808891
YP_005170095.1	CDS	BCGMEX_0626	NC_016804.1	705204	705431	D	hypothetical protein	705204..705431	Mycobacterium bovis BCG str. Mexico	11808892
YP_005170096.1	CDS	BCGMEX_0627c	NC_016804.1	705971	707128	R	Differs from Rv0610c by 1aa S103N in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(705971..707128)	Mycobacterium bovis BCG str. Mexico	11808893
YP_005170097.1	CDS	BCGMEX_0628c	NC_016804.1	707180	707563	R	hypothetical protein	complement(707180..707563)	Mycobacterium bovis BCG str. Mexico	11808894
YP_005170098.1	CDS	BCGMEX_0629	NC_016804.1	707543	708148	D	hypothetical protein	707543..708148	Mycobacterium bovis BCG str. Mexico	11808895
YP_005170099.1	CDS	BCGMEX_0630c	NC_016804.1	708167	710734	R	hypothetical protein	complement(708167..710734)	Mycobacterium bovis BCG str. Mexico	11808896
YP_005170100.1	CDS	BCGMEX_0631	NC_016804.1	710575	711567	D	hypothetical protein	710575..711567	Mycobacterium bovis BCG str. Mexico	11808897
YP_005170101.1	CDS	BCGMEX_0632	NC_016804.1	711564	711806	D	putative integral membrane protein	711564..711806	Mycobacterium bovis BCG str. Mexico	11808898
YP_005170102.1	CDS	BCGMEX_0633c	NC_016804.1	711803	712069	R	hypothetical protein	complement(711803..712069)	Mycobacterium bovis BCG str. Mexico	11808899
YP_005170103.1	CDS	BCGMEX_0634	NC_016804.1	712001	712228	D	hypothetical protein	712001..712228	Mycobacterium bovis BCG str. Mexico	11808900
YP_005170104.1	CDS	BCGMEX_0635	NC_016804.1	712225	712626	D	hypothetical protein	712225..712626	Mycobacterium bovis BCG str. Mexico	11808901
YP_005170105.1	CDS	galT	NC_016804.1	712755	713939	D	In Mycobacterium tuberculosis strain H37Rv, galT is split into 2 parts, galT' and 'galT. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, an in-frame insertion of a single base leads to a single product. Differs from Mb0635 by 1aa R183G and from Rv0619 by 1aa A397T in BCG Pasteur, BCG Tokyo and BCG Mexico; putative galactose-1-phosphate uridylyltransferase	712755..713939	Mycobacterium bovis BCG str. Mexico	11808902
YP_005170106.1	CDS	galK	NC_016804.1	713936	715027	D	Differs from Rv0620 by 1aa R199C in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; galactokinase	713936..715027	Mycobacterium bovis BCG str. Mexico	11808903
YP_005170107.1	CDS	BCGMEX_0638	NC_016804.1	715422	716579	D	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a single base transition leads to a longer product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (385 aa versus 354 aa); hypothetical protein	715422..716579	Mycobacterium bovis BCG str. Mexico	11808904
YP_005170108.1	CDS	BCGMEX_0639	NC_016804.1	716590	717537	D	hypothetical protein	716590..717537	Mycobacterium bovis BCG str. Mexico	11808905
YP_005170109.1	CDS	BCGMEX_0640	NC_016804.1	717630	717884	D	hypothetical protein	717630..717884	Mycobacterium bovis BCG str. Mexico	11808906
YP_005170110.1	CDS	BCGMEX_0641	NC_016804.1	717884	718279	D	hypothetical protein	717884..718279	Mycobacterium bovis BCG str. Mexico	11808907
YP_005170111.1	CDS	BCGMEX_0642c	NC_016804.1	718373	719113	R	hypothetical protein	complement(718373..719113)	Mycobacterium bovis BCG str. Mexico	11808908
YP_005170112.1	CDS	BCGMEX_0643	NC_016804.1	719245	719505	D	hypothetical protein	719245..719505	Mycobacterium bovis BCG str. Mexico	11808909
YP_005170113.1	CDS	BCGMEX_0644	NC_016804.1	719502	719909	D	hypothetical protein	719502..719909	Mycobacterium bovis BCG str. Mexico	11808910
YP_005170114.1	CDS	BCGMEX_0645c	NC_016804.1	719981	721132	R	hypothetical protein	complement(719981..721132)	Mycobacterium bovis BCG str. Mexico	11808911
YP_005170115.1	CDS	recD	NC_016804.1	721225	722952	R	Differs from Rv0629c by 1aa A536T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative exodeoxyribonuclease V alpha chain	complement(721225..722952)	Mycobacterium bovis BCG str. Mexico	11808912
YP_005170116.1	CDS	recBa	NC_016804.1	723539	726232	R	In Mycobacterium tuberculosis strain H37Rv, recB exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a single base deletion (G-*) splits recB into 2 parts, recBa and recBb. Differs from Mb0647c by 1aa H514R and from Rv0630c by 3aa L74V, H514R and F811V in BCG Pasteur, BCG Tokyo and BCG Mexico; putative exodeoxyribonuclease V beta chain	complement(723539..726232)	Mycobacterium bovis BCG str. Mexico	11808914
YP_005170117.1	CDS	recC	NC_016804.1	726232	729525	R	Differs from Rv0631c by 1aa E329G and from Mb0648c by 1aa P858L in BCG Pasteur, BCG Tokyo and BCG Mexico; putative exodeoxyribonuclease V gamma chain	complement(726232..729525)	Mycobacterium bovis BCG str. Mexico	11808915
YP_005170118.1	CDS	echA3	NC_016804.1	729802	730497	R	Differs from Rv0632c and Mb0649c by 1aa M148V in Mycobacterium bovis BCG Pasteur; Enoyl-CoA hydratase	complement(729802..730497)	Mycobacterium bovis BCG str. Mexico	11808916
YP_005170119.1	CDS	BCGMEX_0651c	NC_016804.1	730546	731376	R	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 9 bp deletion (CGGGTGCGC-*) leads to shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (Rv0633c) (276 aa versus 279 aa); hypothetical protein	complement(730546..731376)	Mycobacterium bovis BCG str. Mexico	11808917
YP_005170120.1	CDS	BCGMEX_0652c	NC_016804.1	731530	732243	R	putative glyoxalase II	complement(731530..732243)	Mycobacterium bovis BCG str. Mexico	11808918
YP_005170121.1	CDS	BCGMEX_0653	NC_016804.1	732323	732574	D	hypothetical protein	732323..732574	Mycobacterium bovis BCG str. Mexico	11808919
YP_005170122.1	CDS	rpmG2	NC_016804.1	732922	733089	D	50S ribosomal protein L33	732922..733089	Mycobacterium bovis BCG str. Mexico	11808922
YP_005170123.1	CDS	BCGMEX_0655	NC_016804.1	733140	733616	D	hypothetical protein	733140..733616	Mycobacterium bovis BCG str. Mexico	11808923
YP_005170124.1	CDS	BCGMEX_0656	NC_016804.1	733603	734031	D	Differs from Rv0636 by 1aa A53T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	733603..734031	Mycobacterium bovis BCG str. Mexico	11808924
YP_005170125.1	CDS	BCGMEX_0657	NC_016804.1	734035	734535	D	hypothetical protein	734035..734535	Mycobacterium bovis BCG str. Mexico	11808925
YP_005170126.1	CDS	secE	NC_016804.1	734947	735432	D	preprotein translocase subunit SecE	734947..735432	Mycobacterium bovis BCG str. Mexico	11808927
YP_005170127.1	CDS	nusG	NC_016804.1	735464	736180	D	Transcription antitermination protein	735464..736180	Mycobacterium bovis BCG str. Mexico	11808928
YP_005170128.1	CDS	rplK	NC_016804.1	736232	736660	D	50S ribosomal protein L11	736232..736660	Mycobacterium bovis BCG str. Mexico	11808929
YP_005170129.1	CDS	rplA	NC_016804.1	736727	737434	D	Differs from Rv0641 by 1aa A117T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; 50S ribosomal protein L1	736727..737434	Mycobacterium bovis BCG str. Mexico	11808930
YP_005170130.1	CDS	mmaA4	NC_016804.1	737508	738413	R	Differs from Rv0642c by 1aa L95F in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; methoxy mycolic acid synthase 4	complement(737508..738413)	Mycobacterium bovis BCG str. Mexico	11808931
YP_005170131.1	CDS	mmaA3	NC_016804.1	738478	739359	R	Differ from Rv0643c by 1aa, D98G in BCG Pasteur and BCG Mexico.; methoxy mycolic acid synthase 3	complement(738478..739359)	Mycobacterium bovis BCG str. Mexico	11808932
YP_005170132.1	CDS	mmaA2	NC_016804.1	739507	740370	R	Differs from Rv0644c by 1aa L114R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; methoxy mycolic acid synthase 2	complement(739507..740370)	Mycobacterium bovis BCG str. Mexico	11808933
YP_005170133.1	CDS	mmaA1	NC_016804.1	740537	741397	R	methoxy mycolic acid synthase 1	complement(740537..741397)	Mycobacterium bovis BCG str. Mexico	11808934
YP_005170134.1	CDS	lipG	NC_016804.1	741444	742349	R	putative lipase/esterase	complement(741444..742349)	Mycobacterium bovis BCG str. Mexico	11808935
YP_005170135.1	CDS	BCGMEX_0667c	NC_016804.1	742361	743827	R	Differs from Rv0647c by 1aa T293A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(742361..743827)	Mycobacterium bovis BCG str. Mexico	11808936
YP_005170136.1	CDS	BCGMEX_0668	NC_016804.1	743913	748109	D	Differs from Rv0648 by 1aa L200S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; alpha-mannosidase	743913..748109	Mycobacterium bovis BCG str. Mexico	11808937
YP_005170137.1	CDS	fabD2	NC_016804.1	748106	748780	D	putative Malonyl CoA-acyl carrier protein transacylase	748106..748780	Mycobacterium bovis BCG str. Mexico	11808938
YP_005170138.1	CDS	BCGMEX_0670	NC_016804.1	748780	749688	D	putative sugar kinase	748780..749688	Mycobacterium bovis BCG str. Mexico	11808939
YP_005170139.1	CDS	rplJ	NC_016804.1	750019	750555	D	50S ribosomal protein L10	750019..750555	Mycobacterium bovis BCG str. Mexico	11808940
YP_005170140.1	CDS	rplL	NC_016804.1	750592	750984	D	putative 50S ribosomal protein L7/L12	750592..750984	Mycobacterium bovis BCG str. Mexico	11808941
YP_005170141.1	CDS	BCGMEX_0673c	NC_016804.1	750977	751672	R	putative transcriptional regulatory protein, probably tetR-family	complement(750977..751672)	Mycobacterium bovis BCG str. Mexico	11808942
YP_005170142.1	CDS	BCGMEX_0674	NC_016804.1	751743	753248	D	putative dioxygenase	751743..753248	Mycobacterium bovis BCG str. Mexico	11808943
YP_005170143.1	CDS	mkl	NC_016804.1	753260	754339	D	putative ribonucleotide-transport ATP-binding protein ABC transporter	753260..754339	Mycobacterium bovis BCG str. Mexico	11808944
YP_005170144.1	CDS	BCGMEX_0676c	NC_016804.1	754727	755110	R	hypothetical protein	complement(754727..755110)	Mycobacterium bovis BCG str. Mexico	11808945
YP_005170145.1	CDS	BCGMEX_0677c	NC_016804.1	755205	755360	R	hypothetical protein	complement(755205..755360)	Mycobacterium bovis BCG str. Mexico	11808946
YP_005170146.1	CDS	BCGMEX_0678c	NC_016804.1	755436	756152	R	Differs from Rv0658c by 1aa P75L in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; putative integral membrane protein	complement(755436..756152)	Mycobacterium bovis BCG str. Mexico	11808947
YP_005170147.1	CDS	BCGMEX_0679c	NC_016804.1	756428	756736	R	hypothetical protein	complement(756428..756736)	Mycobacterium bovis BCG str. Mexico	11808948
YP_005170148.1	CDS	BCGMEX_0680c	NC_016804.1	756723	756968	R	hypothetical protein	complement(756723..756968)	Mycobacterium bovis BCG str. Mexico	11808949
YP_005170149.1	CDS	BCGMEX_0681c	NC_016804.1	757078	757515	R	hypothetical protein	complement(757078..757515)	Mycobacterium bovis BCG str. Mexico	11808950
YP_005170150.1	CDS	BCGMEX_0682c	NC_016804.1	757512	757880	R	hypothetical protein	complement(757512..757880)	Mycobacterium bovis BCG str. Mexico	11808951
YP_005170151.1	CDS	atsD	NC_016804.1	757880	760243	D	Differs from Rv0663 by 1aa G349D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative arylsulfatase	757880..760243	Mycobacterium bovis BCG str. Mexico	11808952
YP_005170152.1	CDS	BCGMEX_0684	NC_016804.1	760275	760547	D	hypothetical protein	760275..760547	Mycobacterium bovis BCG str. Mexico	11808953
YP_005170153.1	CDS	BCGMEX_0685	NC_016804.1	760544	760882	D	hypothetical protein	760544..760882	Mycobacterium bovis BCG str. Mexico	11808954
YP_005170154.1	CDS	BCGMEX_0686	NC_016804.1	760879	761052	D	hypothetical protein	760879..761052	Mycobacterium bovis BCG str. Mexico	11808955
YP_005170155.1	CDS	rpoB	NC_016804.1	761550	765068	D	DNA-directed RNA polymerase subunit beta	761550..765068	Mycobacterium bovis BCG str. Mexico	11808956
YP_005170156.1	CDS	rpoC	NC_016804.1	765113	769063	D	Differs from Rv0668 by 2aa A68V, and P69R in BCG Tokyo, by 1aa P69R in BCG Pasteur and  BCG Mexico; DNA-directed RNA polymerase beta'	765113..769063	Mycobacterium bovis BCG str. Mexico	11808957
YP_005170157.1	CDS	BCGMEX_0689c	NC_016804.1	769427	771340	R	Differs from Rv0669c by 1aa P146S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative hydrolase	complement(769427..771340)	Mycobacterium bovis BCG str. Mexico	11808958
YP_005170158.1	CDS	end	NC_016804.1	771535	772293	D	Endonuclease IV	771535..772293	Mycobacterium bovis BCG str. Mexico	11808959
YP_005170159.1	CDS	lpqP	NC_016804.1	772325	773167	D	putative lipoprotein	772325..773167	Mycobacterium bovis BCG str. Mexico	11808960
YP_005170160.1	CDS	fadE8	NC_016804.1	773227	774855	D	putative Acyl-CoA dehydrogenase	773227..774855	Mycobacterium bovis BCG str. Mexico	11808961
YP_005170161.1	CDS	echA4	NC_016804.1	774866	775804	D	Enoyl-CoA hydratase	774866..775804	Mycobacterium bovis BCG str. Mexico	11808962
YP_005170162.1	CDS	BCGMEX_0694	NC_016804.1	775807	776529	D	hypothetical protein	775807..776529	Mycobacterium bovis BCG str. Mexico	11808963
YP_005170163.1	CDS	echA5	NC_016804.1	776526	777317	D	enoyl-CoA hydratase	776526..777317	Mycobacterium bovis BCG str. Mexico	11808964
YP_005170164.1	CDS	mmpL5	NC_016804.1	777329	780223	R	Differs from Rv0676c by 2aa I794T and V948I in Mycobacterium bovis BCG Pasteur anbd BCG Mexico, by 3aa I794T, I906V, V948I in Mycobacterium bovis BCG Tokyo.; putative transmembrane transport protein	complement(777329..780223)	Mycobacterium bovis BCG str. Mexico	11808965
YP_005170165.1	CDS	mmpS5	NC_016804.1	780220	780648	R	putative membrane protein mmpS5	complement(780220..780648)	Mycobacterium bovis BCG str. Mexico	11808966
YP_005170166.1	CDS	BCGMEX_0698	NC_016804.1	780733	781230	D	hypothetical protein	780733..781230	Mycobacterium bovis BCG str. Mexico	11808967
YP_005170167.1	CDS	BCGMEX_0699c	NC_016804.1	781286	781783	R	putative threonine rich protein	complement(781286..781783)	Mycobacterium bovis BCG str. Mexico	11808968
YP_005170168.1	CDS	BCGMEX_0700c	NC_016804.1	781785	782159	R	putative transmembrane protein	complement(781785..782159)	Mycobacterium bovis BCG str. Mexico	11808969
YP_005170169.1	CDS	BCGMEX_0701	NC_016804.1	782464	783054	D	putative transcriptional regulatory protein, TetR-family	782464..783054	Mycobacterium bovis BCG str. Mexico	11808970
YP_005170170.1	CDS	rpsL	NC_016804.1	783303	783677	D	30s ribosomal protein S12	783303..783677	Mycobacterium bovis BCG str. Mexico	11808971
YP_005170171.1	CDS	rpsG	NC_016804.1	783677	784147	D	30s ribosomal protein S7	783677..784147	Mycobacterium bovis BCG str. Mexico	11808972
YP_005170172.1	CDS	fusA1	NC_016804.1	784228	786333	D	Elongation factor G	784228..786333	Mycobacterium bovis BCG str. Mexico	11808973
YP_005170173.1	CDS	tuf	NC_016804.1	786564	787754	D	Elongation factor Tu	786564..787754	Mycobacterium bovis BCG str. Mexico	11808974
YP_005170174.1	CDS	BCGMEX_0706	NC_016804.1	787892	788689	D	Differs from Rv0686 by 1aa S82I in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	787892..788689	Mycobacterium bovis BCG str. Mexico	11808975
YP_005170175.1	CDS	fabG	NC_016804.1	788842	789669	D	3-ketoacyl-ACP reductase	788842..789669	Mycobacterium bovis BCG str. Mexico	11808976
YP_005170176.1	CDS	BCGMEX_0708	NC_016804.1	789683	790903	D	putative ferredoxin reductase	789683..790903	Mycobacterium bovis BCG str. Mexico	11808977
YP_005170177.1	CDS	BCGMEX_0709c	NC_016804.1	790900	791154	R	hypothetical protein	complement(790900..791154)	Mycobacterium bovis BCG str. Mexico	11808978
YP_005170178.1	CDS	BCGMEX_0710c	NC_016804.1	791767	792816	R	hypothetical protein	complement(791767..792816)	Mycobacterium bovis BCG str. Mexico	11808979
YP_005170179.1	CDS	BCGMEX_0711c	NC_016804.1	792813	793409	R	putative transcriptional regulatory protein	complement(792813..793409)	Mycobacterium bovis BCG str. Mexico	11808980
YP_005170180.1	CDS	BCGMEX_0712	NC_016804.1	793574	793903	D	hypothetical protein	793574..793903	Mycobacterium bovis BCG str. Mexico	11808981
YP_005170181.1	CDS	pqqE	NC_016804.1	793900	795075	D	putative coenzyme pqq synthesis protein E	793900..795075	Mycobacterium bovis BCG str. Mexico	11808982
YP_005170182.1	CDS	lldD1	NC_016804.1	795078	796268	D	Cytochrome; putative L-lactate dehydrogenase	795078..796268	Mycobacterium bovis BCG str. Mexico	11808983
YP_005170183.1	CDS	BCGMEX_0715	NC_016804.1	796458	797213	D	hypothetical protein	796458..797213	Mycobacterium bovis BCG str. Mexico	11808984
YP_005170184.1	CDS	BCGMEX_0716	NC_016804.1	797262	798674	D	putative membran sugar transferase	797262..798674	Mycobacterium bovis BCG str. Mexico	11808985
YP_005170185.1	CDS	BCGMEX_0717	NC_016804.1	798676	800115	D	putative dehydrogenase	798676..800115	Mycobacterium bovis BCG str. Mexico	11808986
YP_005170186.1	CDS	BCGMEX_0718	NC_016804.1	800576	800905	D	In Mycobacterium tuberculosis strain H37Rv, Rv0698 exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a single base deletion (C-*) splits Rv0698 into 2 parts, Mb0717 and Mb0718; hypothetical protein	800576..800905	Mycobacterium bovis BCG str. Mexico	11808987
YP_005170187.1	CDS	BCGMEX_0719	NC_016804.1	800953	801186	D	In Mycobacterium tuberculosis strain H37Rv, Rv0698 exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a single base deletion (C-*) splits Rv0698 into 2 parts, Mb0717 and Mb0718; hypothetical protein	800953..801186	Mycobacterium bovis BCG str. Mexico	11808988
YP_005170188.1	CDS	BCGMEX_0720	NC_016804.1	801371	801592	D	hypothetical protein	801371..801592	Mycobacterium bovis BCG str. Mexico	11808989
YP_005170189.1	CDS	rpsJ	NC_016804.1	802229	802534	D	30S ribosomal protein S10	802229..802534	Mycobacterium bovis BCG str. Mexico	11808990
YP_005170190.1	CDS	rplC	NC_016804.1	802551	803204	D	50S ribosomal protein L3	802551..803204	Mycobacterium bovis BCG str. Mexico	11808991
YP_005170191.1	CDS	rplD	NC_016804.1	803204	803875	D	50S ribosomal protein L4	803204..803875	Mycobacterium bovis BCG str. Mexico	11808992
YP_005170192.1	CDS	rplW	NC_016804.1	803875	804177	D	50S ribosomal protein L23	803875..804177	Mycobacterium bovis BCG str. Mexico	11808993
YP_005170193.1	CDS	rplB	NC_016804.1	804324	805166	D	50S ribosomal protein L2	804324..805166	Mycobacterium bovis BCG str. Mexico	11808994
YP_005170194.1	CDS	rpsS	NC_016804.1	805207	805488	D	30S ribosomal protein S19	805207..805488	Mycobacterium bovis BCG str. Mexico	11808995
YP_005170195.1	CDS	rplV	NC_016804.1	805485	806078	D	50S ribosomal protein L22	805485..806078	Mycobacterium bovis BCG str. Mexico	11808996
YP_005170196.1	CDS	rpsC	NC_016804.1	806078	806902	D	30S ribosomal protein S3	806078..806902	Mycobacterium bovis BCG str. Mexico	11808997
YP_005170197.1	CDS	rplP	NC_016804.1	806906	807322	D	50S ribosomal protein L16	806906..807322	Mycobacterium bovis BCG str. Mexico	11808998
YP_005170198.1	CDS	rpmC	NC_016804.1	807322	807555	D	50S ribosomal protein L29	807322..807555	Mycobacterium bovis BCG str. Mexico	11808999
YP_005170199.1	CDS	rpsQ	NC_016804.1	807552	807962	D	30S ribosomal protein S17	807552..807962	Mycobacterium bovis BCG str. Mexico	11809000
YP_005170200.1	CDS	atsA	NC_016804.1	808131	810494	D	In Mycobacterium tuberculosis strain H37Rv, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, atsA exists as a single gene. In Mycobacterium bovis, a single base transversion (G-T), introducing a stop codon, splits atsA into 2 parts, atsAa and atsA; putative arylsulfatase	808131..810494	Mycobacterium bovis BCG str. Mexico	11809001
YP_005170201.1	CDS	BCGMEX_0733	NC_016804.1	810542	811441	D	hypothetical protein	810542..811441	Mycobacterium bovis BCG str. Mexico	11809002
YP_005170202.1	CDS	BCGMEX_0734	NC_016804.1	811742	812683	D	transmembrane protein	811742..812683	Mycobacterium bovis BCG str. Mexico	11809003
YP_005170203.1	CDS	rplN	NC_016804.1	813169	813537	D	50S ribosomal protein L14	813169..813537	Mycobacterium bovis BCG str. Mexico	11809004
YP_005170204.1	CDS	rplX	NC_016804.1	813538	813855	D	50S ribosomal protein L24	813538..813855	Mycobacterium bovis BCG str. Mexico	11809005
YP_005170205.1	CDS	rplE	NC_016804.1	813855	814418	D	Differs from Rv0716, Mb0737 by 1aa S134N in Mycobacterium bovis BCG Tokyo; 50S ribosomal protein L5	813855..814418	Mycobacterium bovis BCG str. Mexico	11809006
YP_005170206.1	CDS	rpsN1	NC_016804.1	814423	814608	D	30S ribosomal protein S14	814423..814608	Mycobacterium bovis BCG str. Mexico	11809007
YP_005170207.1	CDS	rpsH	NC_016804.1	814718	815116	D	30S ribosomal protein S8	814718..815116	Mycobacterium bovis BCG str. Mexico	11809008
YP_005170208.1	CDS	rplF	NC_016804.1	815140	815679	D	50S ribosomal protein L6	815140..815679	Mycobacterium bovis BCG str. Mexico	11809009
YP_005170209.1	CDS	rplR	NC_016804.1	815682	816050	D	50S ribosomal protein L18	815682..816050	Mycobacterium bovis BCG str. Mexico	11809010
YP_005170210.1	CDS	rpsE	NC_016804.1	816070	816732	D	30S ribosomal protein S5	816070..816732	Mycobacterium bovis BCG str. Mexico	11809011
YP_005170211.1	CDS	rpmD	NC_016804.1	816735	816932	D	50S ribosomal protein L30	816735..816932	Mycobacterium bovis BCG str. Mexico	11809012
YP_005170212.1	CDS	rplO	NC_016804.1	816932	817372	D	Differs from Rv0723 by 1aa T16I in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; 50S ribosomal protein L15	816932..817372	Mycobacterium bovis BCG str. Mexico	11809013
YP_005170213.1	CDS	sppA	NC_016804.1	817405	819276	D	Endopeptidase IV; putative protease IV	817405..819276	Mycobacterium bovis BCG str. Mexico	11809014
YP_005170214.1	CDS	BCGMEX_0746c	NC_016804.1	819281	820186	R	hypothetical protein	complement(819281..820186)	Mycobacterium bovis BCG str. Mexico	11809015
YP_005170215.1	CDS	BCGMEX_0747c	NC_016804.1	820279	821382	R	hypothetical protein	complement(820279..821382)	Mycobacterium bovis BCG str. Mexico	11809016
YP_005170216.1	CDS	fucA	NC_016804.1	821585	822241	R	L-fuculose phosphate aldolase	complement(821585..822241)	Mycobacterium bovis BCG str. Mexico	11809017
YP_005170217.1	CDS	serA2	NC_016804.1	822238	823218	R	Differs from Rv0728c by 1aa H242R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; D-3-phosphoglycerate dehydrogenase	complement(822238..823218)	Mycobacterium bovis BCG str. Mexico	11809018
YP_005170218.1	CDS	xylB	NC_016804.1	823249	824595	D	Differs from Rv0729 by 2aa P134L and S439 in Mycobacterium bovis BCG Pasteur, BCG Tokyo, and BCG Mexico; putative D-xylulose kinase	823249..824595	Mycobacterium bovis BCG str. Mexico	11809019
YP_005170219.1	CDS	BCGMEX_0751	NC_016804.1	824608	825336	D	hypothetical protein	824608..825336	Mycobacterium bovis BCG str. Mexico	11809020
YP_005170220.1	CDS	BCGMEX_0752c	NC_016804.1	825425	826381	R	hypothetical protein	complement(825425..826381)	Mycobacterium bovis BCG str. Mexico	11809021
YP_005170221.1	CDS	secY	NC_016804.1	826542	827867	D	preprotein translocase subunit secY	826542..827867	Mycobacterium bovis BCG str. Mexico	11809022
YP_005170222.1	CDS	adk	NC_016804.1	827864	828409	D	adenylate kinase	827864..828409	Mycobacterium bovis BCG str. Mexico	11809023
YP_005170223.1	CDS	mapA	NC_016804.1	828412	829212	D	methionine aminopeptidase	828412..829212	Mycobacterium bovis BCG str. Mexico	11809024
YP_005170224.1	CDS	sigL	NC_016804.1	829285	829818	D	RNA polymerase sigma factor SigL	829285..829818	Mycobacterium bovis BCG str. Mexico	11809025
YP_005170225.1	CDS	BCGMEX_0757	NC_016804.1	829882	830634	D	hypothetical protein	829882..830634	Mycobacterium bovis BCG str. Mexico	11809026
YP_005170226.1	CDS	BCGMEX_0758	NC_016804.1	830949	831446	D	MarR family transcriptional regulator	830949..831446	Mycobacterium bovis BCG str. Mexico	11809027
YP_005170227.1	CDS	BCGMEX_0759	NC_016804.1	831804	832352	D	hypothetical protein	831804..832352	Mycobacterium bovis BCG str. Mexico	11809028
YP_005170228.1	CDS	BCGMEX_0760	NC_016804.1	832557	833405	D	hypothetical protein	832557..833405	Mycobacterium bovis BCG str. Mexico	11809029
YP_005170229.1	CDS	BCGMEX_0761	NC_016804.1	833520	834047	D	hypothetical protein	833520..834047	Mycobacterium bovis BCG str. Mexico	11809030
YP_005170230.1	CDS	BCGMEX_0762	NC_016804.1	834278	834592	D	transposase	834278..834592	Mycobacterium bovis BCG str. Mexico	11809031
YP_005170231.1	CDS	PE_PGRS8	NC_016804.1	834734	835252	D	PE PGRS family protein	834734..835252	Mycobacterium bovis BCG str. Mexico	11809032
YP_005170232.1	CDS	BCGMEX_0764c	NC_016804.1	835630	836187	R	hypothetical protein	complement(835630..836187)	Mycobacterium bovis BCG str. Mexico	11809033
YP_005170233.1	CDS	BCGMEX_0765c	NC_016804.1	836184	836690	R	transcriptional regulator	complement(836184..836690)	Mycobacterium bovis BCG str. Mexico	11809034
YP_005170234.1	CDS	BCGMEX_0766	NC_016804.1	836898	837425	D	hypothetical protein	836898..837425	Mycobacterium bovis BCG str. Mexico	11809035
YP_005170235.1	CDS	PE_PGRS9	NC_016804.1	837445	839838	D	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, two 48 bp deletions, and a 138 bp insertion leads to a longer product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (797 aa versus 783 aa). Differs from Mb0767 by 1aa S597N in BCG Pasteur, BCG Tokyo and BCG Mexico; PE-PGRS family protein	837445..839838	Mycobacterium bovis BCG str. Mexico	11809036
YP_005170236.1	CDS	PE_PGRS10	NC_016804.1	840237	842918	D	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, insertions of 168 bp and 105 bp, a 11 bp for 71 bp substitution, and a 9 bp deletion, leads to a longer product compared to the homolog in Mycobacterium tuberculosis strain H37Rv (909 aa and 893 aa versus 801 aa). In addition, in Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 48 bp deletion compared to Mycobacterium bovis and Mycobacterium tuberculosis strain H37Rv occurs; PE-PGRS family protein	840237..842918	Mycobacterium bovis BCG str. Mexico	11809037
YP_005170237.1	CDS	BCGMEX_0769	NC_016804.1	843009	843266	D	hypothetical protein	843009..843266	Mycobacterium bovis BCG str. Mexico	11809038
YP_005170238.1	CDS	BCGMEX_0770	NC_016804.1	843290	843718	D	hypothetical protein	843290..843718	Mycobacterium bovis BCG str. Mexico	11809039
YP_005170239.1	CDS	BCGMEX_0771c	NC_016804.1	843799	843936	R	hypothetical protein	complement(843799..843936)	Mycobacterium bovis BCG str. Mexico	11809040
YP_005170240.1	CDS	BCGMEX_0772	NC_016804.1	844095	844340	D	hypothetical protein	844095..844340	Mycobacterium bovis BCG str. Mexico	11809041
YP_005170241.1	CDS	mmsB	NC_016804.1	844409	845293	R	putative 3-hydroxyisobutyrate dehydrogenase	complement(844409..845293)	Mycobacterium bovis BCG str. Mexico	11809042
YP_005170242.1	CDS	fadE9	NC_016804.1	845304	846476	R	Differs from Rv0752c by 2aa A69V and V186I in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative acyl-CoA dehydrogenase	complement(845304..846476)	Mycobacterium bovis BCG str. Mexico	11809043
YP_005170243.1	CDS	mmsA	NC_016804.1	846483	848015	R	Differs from Mb0775c by 1aa V442G in Mycobacterium tuberculosis H37Rv, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; methylmalonate-semialdehyde dehydrogenase	complement(846483..848015)	Mycobacterium bovis BCG str. Mexico	11809044
YP_005170244.1	CDS	PE_PGRS11	NC_016804.1	848230	849975	D	PE PGRS family protein	848230..849975	Mycobacterium bovis BCG str. Mexico	11809045
YP_005170245.1	CDS	PPE12	NC_016804.1	850165	852102	R	Differs from Rv0755c by 1aa K545R in BCG Pasteur, BCG Tokyo and BCG Mexico; PPE family protein	complement(850165..852102)	Mycobacterium bovis BCG str. Mexico	11809046
YP_005170246.1	CDS	BCGMEX_0778c	NC_016804.1	852404	852589	R	putative transposase	complement(852404..852589)	Mycobacterium bovis BCG str. Mexico	11809047
YP_005170247.1	CDS	BCGMEX_0779c	NC_016804.1	852803	853528	R	hypothetical protein	complement(852803..853528)	Mycobacterium bovis BCG str. Mexico	11809049
YP_005170248.1	CDS	phoP	NC_016804.1	853670	854413	D	putative two component system response transcriptional positive regulator	853670..854413	Mycobacterium bovis BCG str. Mexico	11809050
YP_005170249.1	CDS	phoR	NC_016804.1	854458	855915	D	Differs from Rv0755c by 2aa I71G, L172P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative two component system response sensor kinase membrane associated	854458..855915	Mycobacterium bovis BCG str. Mexico	11809051
YP_005170250.1	CDS	BCGMEX_0782c	NC_016804.1	855887	856219	R	hypothetical protein	complement(855887..856219)	Mycobacterium bovis BCG str. Mexico	11809052
YP_005170251.1	CDS	BCGMEX_0783c	NC_016804.1	856328	856747	R	hypothetical protein	complement(856328..856747)	Mycobacterium bovis BCG str. Mexico	11809053
YP_005170252.1	CDS	adhB	NC_016804.1	856760	857887	R	putative zinc-containing alcohol dehydrogenase NAD dependent	complement(856760..857887)	Mycobacterium bovis BCG str. Mexico	11809054
YP_005170253.1	CDS	BCGMEX_0785c	NC_016804.1	857986	858531	R	hypothetical protein	complement(857986..858531)	Mycobacterium bovis BCG str. Mexico	11809055
YP_005170254.1	CDS	BCGMEX_0786c	NC_016804.1	858534	858740	R	putative ferredoxin	complement(858534..858740)	Mycobacterium bovis BCG str. Mexico	11809056
YP_005170255.1	CDS	cyp51	NC_016804.1	858743	860098	R	cytochrome P450 51	complement(858743..860098)	Mycobacterium bovis BCG str. Mexico	11809057
YP_005170256.1	CDS	BCGMEX_0788c	NC_016804.1	860098	860925	R	short-chain dehydrogenase	complement(860098..860925)	Mycobacterium bovis BCG str. Mexico	11809058
YP_005170257.1	CDS	cyp123	NC_016804.1	860507	862132	R	putative cytochrome P450 123	complement(860507..862132)	Mycobacterium bovis BCG str. Mexico	11809059
YP_005170258.1	CDS	BCGMEX_0790c	NC_016804.1	862129	862770	R	hypothetical protein	complement(862129..862770)	Mycobacterium bovis BCG str. Mexico	11809060
YP_005170259.1	CDS	aldA	NC_016804.1	862972	864441	D	putative aldehyde dehydrogenase NAD dependent	862972..864441	Mycobacterium bovis BCG str. Mexico	11809061
YP_005170260.1	CDS	BCGMEX_0792	NC_016804.1	864472	865218	D	Differs from Rv0769 by 1aa V55A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; short-chain dehydrogenase	864472..865218	Mycobacterium bovis BCG str. Mexico	11809062
YP_005170261.1	CDS	BCGMEX_0793	NC_016804.1	865316	866203	D	Differs from Mb0793 by 1aa V126G in BCG Pasteur, BCG Tokyo and BCG Mexico; putative dehydrogenase/reductase	865316..866203	Mycobacterium bovis BCG str. Mexico	11809063
YP_005170262.1	CDS	BCGMEX_0794	NC_016804.1	866200	866634	D	4-carboxymuconolactone decarboxylase	866200..866634	Mycobacterium bovis BCG str. Mexico	11809064
YP_005170263.1	CDS	purD	NC_016804.1	866646	867914	D	phosphoribosylamine--glycine ligase	866646..867914	Mycobacterium bovis BCG str. Mexico	11809065
YP_005170264.1	CDS	ggtA	NC_016804.1	867911	869449	R	Gamma-glutamyltranspeptidase; putative cephalosporin acylase	complement(867911..869449)	Mycobacterium bovis BCG str. Mexico	11809066
YP_005170265.1	CDS	BCGMEX_0797c	NC_016804.1	869500	870411	R	Differs from Rv0774c by 1aa A219S and from Mb0797c by 1aa D142A in BCG Pasteur,  BCG Tokyo and BCG Mexico; hypothetical protein	complement(869500..870411)	Mycobacterium bovis BCG str. Mexico	11809067
YP_005170266.1	CDS	BCGMEX_0798	NC_016804.1	870467	871090	D	hypothetical protein	870467..871090	Mycobacterium bovis BCG str. Mexico	11809068
YP_005170267.1	CDS	BCGMEX_0799c	NC_016804.1	871044	871823	R	hypothetical protein	complement(871044..871823)	Mycobacterium bovis BCG str. Mexico	11809069
YP_005170268.1	CDS	purB	NC_016804.1	872068	873486	D	Differs from Rv0777 by 1aa P422T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative adenylosuccinate lyase	872068..873486	Mycobacterium bovis BCG str. Mexico	11809070
YP_005170269.1	CDS	cyp126	NC_016804.1	873491	874735	D	putative cytochrome P450 126	873491..874735	Mycobacterium bovis BCG str. Mexico	11809071
YP_005170270.1	CDS	BCGMEX_0802c	NC_016804.1	874732	875352	R	transmembrane protein	complement(874732..875352)	Mycobacterium bovis BCG str. Mexico	11809072
YP_005170271.1	CDS	purC	NC_016804.1	875403	876296	D	phosphoribosylaminoimidazole-succinocarboxamide synthase	875403..876296	Mycobacterium bovis BCG str. Mexico	11809073
YP_005170272.1	CDS	ptrB	NC_016804.1	876293	878452	D	In Mycobacterium tuberculosis strain H37Rv, ptrB is split into 2 genes, ptrBa and ptrBb, due to a frameshift. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 2 bp insertion leads to a single product; oligopeptidase B; putative protease II	876293..878452	Mycobacterium bovis BCG str. Mexico	11809074
YP_005170273.1	CDS	emrB	NC_016804.1	878880	880502	R	putative multidrug resistance integral membrane efflux protein	complement(878880..880502)	Mycobacterium bovis BCG str. Mexico	11809075
YP_005170274.1	CDS	BCGMEX_0806	NC_016804.1	880700	881386	D	hypothetical protein	880700..881386	Mycobacterium bovis BCG str. Mexico	11809076
YP_005170275.1	CDS	BCGMEX_0807	NC_016804.1	881402	881977	D	In Mycobacterium tuberculosis strain H37Rv, Rv0785 exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a single base deletion, splits Mb0807 into 2 parts, Mb0807 and Mb0808; hypothetical protein	881402..881977	Mycobacterium bovis BCG str. Mexico	11809077
YP_005170276.1	CDS	BCGMEX_0808	NC_016804.1	881995	883101	D	In Mycobacterium tuberculosis strain H37Rv, Rv0785 exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a single base deletion, splits Mb0807 into 2 parts, Mb0807 and Mb0808; hypothetical protein	881995..883101	Mycobacterium bovis BCG str. Mexico	11809078
YP_005170277.1	CDS	BCGMEX_0809c	NC_016804.1	883136	883525	R	hypothetical protein	complement(883136..883525)	Mycobacterium bovis BCG str. Mexico	11809079
YP_005170278.1	CDS	BCGMEX_0810	NC_016804.1	883520	884479	D	Differs from Rv0787 by 1aa H269Y in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo, and BCG Mexico; hypothetical protein	883520..884479	Mycobacterium bovis BCG str. Mexico	11809080
YP_005170279.1	CDS	BCGMEX_0811	NC_016804.1	884585	884824	D	phosphoribosylformylglycinamidine synthase subunit PurS	884585..884824	Mycobacterium bovis BCG str. Mexico	11809081
YP_005170280.1	CDS	purQ	NC_016804.1	884821	885495	D	phosphoribosylformylglycinamidine synthase subunit I	884821..885495	Mycobacterium bovis BCG str. Mexico	11809082
YP_005170281.1	CDS	BCGMEX_0813c	NC_016804.1	885512	886111	R	hypothetical protein	complement(885512..886111)	Mycobacterium bovis BCG str. Mexico	11809083
YP_005170282.1	CDS	BCGMEX_0814c	NC_016804.1	886133	886861	R	hypothetical protein	complement(886133..886861)	Mycobacterium bovis BCG str. Mexico	11809084
YP_005170283.1	CDS	BCGMEX_0815c	NC_016804.1	886858	887901	R	hypothetical protein	complement(886858..887901)	Mycobacterium bovis BCG str. Mexico	11809085
YP_005170284.1	CDS	BCGMEX_0816c	NC_016804.1	887898	888707	R	putative transcriptional regulatory protein, probably GntR-family	complement(887898..888707)	Mycobacterium bovis BCG str. Mexico	11809086
YP_005170285.1	CDS	BCGMEX_0817	NC_016804.1	888780	889085	D	hypothetical protein	888780..889085	Mycobacterium bovis BCG str. Mexico	11809087
YP_005170286.1	CDS	BCGMEX_0818c	NC_016804.1	889198	889809	R	In Mycobacterium tuberculosis strain H37Rv, Rv0794c exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo, and BCG Mexico, a frameshift due to a single base deletion splits Rv0794c into 2 parts; putative oxidoreductase	complement(889198..889809)	Mycobacterium bovis BCG str. Mexico	11809088
YP_005170287.1	CDS	BCGMEX_0819c	NC_016804.1	889797	890696	R	In Mycobacterium tuberculosis strain H37Rv, Rv0794c exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo, and BCG Mexico, a frameshift due to a single base deletion splits Rv0794c into 2 parts; putative oxidoreductase	complement(889797..890696)	Mycobacterium bovis BCG str. Mexico	11809089
YP_005170288.1	CDS	BCGMEX_0820	NC_016804.1	891089	892183	D	putative transposase for insertion sequence element IS1547	891089..892183	Mycobacterium bovis BCG str. Mexico	11809090
YP_005170289.1	CDS	cfp29	NC_016804.1	892173	892970	R	29 kDa antigen	complement(892173..892970)	Mycobacterium bovis BCG str. Mexico	11809091
YP_005170290.1	CDS	BCGMEX_0822c	NC_016804.1	892967	893974	R	hypothetical protein	complement(892967..893974)	Mycobacterium bovis BCG str. Mexico	11809092
YP_005170291.1	CDS	pepC	NC_016804.1	894019	895320	D	Differs from Rv0800 by 1aa R139L in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo, and BCG Mexico; putative M18 family aminopeptidase 2	894019..895320	Mycobacterium bovis BCG str. Mexico	11809093
YP_005170292.1	CDS	BCGMEX_0824	NC_016804.1	895332	895679	D	hypothetical protein	895332..895679	Mycobacterium bovis BCG str. Mexico	11809094
YP_005170293.1	CDS	BCGMEX_0825c	NC_016804.1	895673	896329	R	hypothetical protein	complement(895673..896329)	Mycobacterium bovis BCG str. Mexico	11809095
YP_005170294.1	CDS	purL	NC_016804.1	896521	898785	D	phosphoribosylformylglycinamidine synthase II	896521..898785	Mycobacterium bovis BCG str. Mexico	11809096
YP_005170295.1	CDS	BCGMEX_0827	NC_016804.1	898782	899411	D	hypothetical protein	898782..899411	Mycobacterium bovis BCG str. Mexico	11809097
YP_005170296.1	CDS	BCGMEX_0828	NC_016804.1	899532	900488	D	hypothetical protein	899532..900488	Mycobacterium bovis BCG str. Mexico	11809098
YP_005170297.1	CDS	cpsY	NC_016804.1	900433	902031	R	putative UDP-glucose-4-epimerase	complement(900433..902031)	Mycobacterium bovis BCG str. Mexico	11809099
YP_005170298.1	CDS	BCGMEX_0830	NC_016804.1	902336	902725	D	hypothetical protein	902336..902725	Mycobacterium bovis BCG str. Mexico	11809100
YP_005170299.1	CDS	purF	NC_016804.1	902812	904395	D	amidophosphoribosyltransferase	902812..904395	Mycobacterium bovis BCG str. Mexico	11809101
YP_005170300.1	CDS	purM	NC_016804.1	904426	905520	D	phosphoribosylformylglycinamidine cyclo-ligase	904426..905520	Mycobacterium bovis BCG str. Mexico	11809102
YP_005170301.1	CDS	BCGMEX_0833c	NC_016804.1	905606	905788	R	hypothetical protein	complement(905606..905788)	Mycobacterium bovis BCG str. Mexico	11809103
YP_005170302.1	CDS	BCGMEX_0834c	NC_016804.1	905935	907041	R	hypothetical protein	complement(905935..907041)	Mycobacterium bovis BCG str. Mexico	11809104
YP_005170303.1	CDS	BCGMEX_0835	NC_016804.1	907106	907993	D	Differs from Rv0812 by 1aa M145I in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative aminotransferasa	907106..907993	Mycobacterium bovis BCG str. Mexico	11809105
YP_005170304.1	CDS	BCGMEX_0836c	NC_016804.1	908039	908719	R	similar to BCG_0865c; hypothetical protein	complement(908039..908719)	Mycobacterium bovis BCG str. Mexico	11809106
YP_005170305.1	CDS	sseC2	NC_016804.1	908882	909184	R	hypothetical protein	complement(908882..909184)	Mycobacterium bovis BCG str. Mexico	11809107
YP_005170306.1	CDS	cysA2	NC_016804.1	909186	910019	R	Rhodanese-like protein; thiosulfate sulfurtransferase	complement(909186..910019)	Mycobacterium bovis BCG str. Mexico	11809108
YP_005170307.1	CDS	thiX	NC_016804.1	910312	910734	R	putative thioredoxin	complement(910312..910734)	Mycobacterium bovis BCG str. Mexico	11809109
YP_005170308.1	CDS	BCGMEX_0840c	NC_016804.1	910731	911543	R	hypothetical protein	complement(910731..911543)	Mycobacterium bovis BCG str. Mexico	11809110
YP_005170309.1	CDS	BCGMEX_0841	NC_016804.1	911673	912440	D	Differs from Rv0818 by 1aa P97L in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; transcriptional regulatory protein	911673..912440	Mycobacterium bovis BCG str. Mexico	11809111
YP_005170310.1	CDS	BCGMEX_0842	NC_016804.1	912437	913384	D	hypothetical protein	912437..913384	Mycobacterium bovis BCG str. Mexico	11809112
YP_005170311.1	CDS	phoTa	NC_016804.1	913427	913939	D	In Mycobacterium tuberculosis strain H37Rv and Mycobacterium bovis phoT exists as a single gene. In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a single base deletion , splits phoT into two parts phoTa and phoTb. Differs from Rv0820 by 1aa L35F in BCG Pasteur, BCG Tokyo and BCG Mexico; putative phosphate-transport ATP-binding protein ABC transporter	913427..913939	Mycobacterium bovis BCG str. Mexico	11809113
YP_005170312.1	CDS	phoY2	NC_016804.1	914258	914899	R	putative phosphate-transport system transcriptional regulatory protein	complement(914258..914899)	Mycobacterium bovis BCG str. Mexico	11809115
YP_005170313.1	CDS	BCGMEX_0846c	NC_016804.1	914957	917011	R	Differs from Rv0822c by 1aa P89H in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo, and BCG Mexico; hypothetical protein	complement(914957..917011)	Mycobacterium bovis BCG str. Mexico	11809116
YP_005170314.1	CDS	BCGMEX_0847c	NC_016804.1	917177	918346	R	Differs from Rv0823c by 2aa C130G and L330F in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo, and BCG Mexico; transcriptional regulator	complement(917177..918346)	Mycobacterium bovis BCG str. Mexico	11809117
YP_005170315.1	CDS	desA1	NC_016804.1	918434	919450	R	putative acyl-[acyl-carrier protein] desaturase DESA1 (Acyl-[ACP] desaturase)	complement(918434..919450)	Mycobacterium bovis BCG str. Mexico	11809118
YP_005170316.1	CDS	BCGMEX_0849c	NC_016804.1	919612	920253	R	hypothetical protein	complement(919612..920253)	Mycobacterium bovis BCG str. Mexico	11809119
YP_005170317.1	CDS	BCGMEX_0850	NC_016804.1	920334	921389	D	Differs from Rv0826 by 1aa Q294R and Mb0849 by 1aaE97G in BCG Pasteur BCG Tokyo and BCG Mexico; hypothetical protein	920334..921389	Mycobacterium bovis BCG str. Mexico	11809120
YP_005170318.1	CDS	BCGMEX_0851c	NC_016804.1	921441	921833	R	putative transcriptional regulatory protein	complement(921441..921833)	Mycobacterium bovis BCG str. Mexico	11809121
YP_005170319.1	CDS	BCGMEX_0852c	NC_016804.1	921891	922313	R	putative deaminase	complement(921891..922313)	Mycobacterium bovis BCG str. Mexico	11809122
YP_005170320.1	CDS	BCGMEX_0853	NC_016804.1	922275	922565	D	Differs from Rv0829 by 1aa G80A in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transposase	922275..922565	Mycobacterium bovis BCG str. Mexico	11809123
YP_005170321.1	CDS	BCGMEX_0854	NC_016804.1	922670	923575	D	putative S-adenosyl-L-methionine-dependent methyltransferase	922670..923575	Mycobacterium bovis BCG str. Mexico	11809124
YP_005170322.1	CDS	BCGMEX_0855c	NC_016804.1	923594	924409	R	hypothetical protein	complement(923594..924409)	Mycobacterium bovis BCG str. Mexico	11809125
YP_005170323.1	CDS	PE_PGRS13	NC_016804.1	925651	928383	D	In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, PE-PGRS13 exist as a single gene. In Mycobacterium tuberculosis and Mycobacterium bovis, it is splitted in 2 genes PE-PGRS12 and PE-PGRS13; PE-PGRS family protein	925651..928383	Mycobacterium bovis BCG str. Mexico	11809130
YP_005170324.1	CDS	PE_PGRS14	NC_016804.1	928610	931258	R	In Mycobacterium bovis, deletions of 143 bp and 9 bp, leads to a shorter product compared to the homolog in Mycobacterium tuberculosis strain H37Rv, Mycobacterium bovis BCG Pasteur, BCG Tokyo, and BCG Mexico (831 aa versus 882 aa); putative S-adenosyl-L-methionine-dependent methyltransferase	complement(928610..931258)	Mycobacterium bovis BCG str. Mexico	11809131
YP_005170325.1	CDS	lpqQ	NC_016804.1	931726	932370	D	Differs from Rv0835 by 1aa G162D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo, and BCG Mexico; putative lipoprotein	931726..932370	Mycobacterium bovis BCG str. Mexico	11809132
YP_005170326.1	CDS	BCGMEX_0859c	NC_016804.1	932983	933705	R	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo, and BCG Mexico, a single base transition leads to a longer product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (240 aa versus 217 aa); hypothetical protein	complement(932983..933705)	Mycobacterium bovis BCG str. Mexico	11809133
YP_005170327.1	CDS	BCGMEX_0860c	NC_016804.1	933776	934804	R	hypothetical protein	complement(933776..934804)	Mycobacterium bovis BCG str. Mexico	11809134
YP_005170328.1	CDS	lpqR	NC_016804.1	935493	936275	D	In Mycobacterium bovis, a 6bp insertion leads to a slightly longer product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (258 aa versus 256 aa). In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 12bp insertion (compared to its homolog in Mycobacterium tuberculosis strain H37Rv) and a 6bp insertion (compared to its homolog in Mycobacterium bovis) leads to an even longer product (260 aa); putative lipoprotein	935493..936275	Mycobacterium bovis BCG str. Mexico	11809135
YP_005170329.1	CDS	BCGMEX_0862	NC_016804.1	936362	937174	D	hypothetical protein	936362..937174	Mycobacterium bovis BCG str. Mexico	11809136
YP_005170330.1	CDS	pip	NC_016804.1	937242	938102	R	putative proline iminopeptidase PIP	complement(937242..938102)	Mycobacterium bovis BCG str. Mexico	11809137
YP_005170331.1	CDS	BCGMEX_0864	NC_016804.1	938378	938620	D	Differs from Rv0841 by 1aa F29V in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	938378..938620	Mycobacterium bovis BCG str. Mexico	11809138
YP_005170332.1	CDS	BCGMEX_0865	NC_016804.1	938897	940189	D	putative integral membrane protein	938897..940189	Mycobacterium bovis BCG str. Mexico	11809139
YP_005170333.1	CDS	BCGMEX_0866	NC_016804.1	940173	941177	D	Differs from Rv0843 by 1aa G191D and from Mb0866 by 1aa A309D in BCG Pasteur, BCG Tokyo and BCG Mexico; putative dehydrogenase	940173..941177	Mycobacterium bovis BCG str. Mexico	11809140
YP_005170334.1	CDS	narL	NC_016804.1	941241	941891	R	Differs from Mb0867c by 1aa A73P in BCG Pasteur, BCG Tokyo and BCG Mexico; putative nitrate/nitrite response transcriptional regulatory protein	complement(941241..941891)	Mycobacterium bovis BCG str. Mexico	11809141
YP_005170335.1	CDS	BCGMEX_0868	NC_016804.1	941975	943252	D	Differs from Rv0845 by 1aa E219A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo, and BCG Mexico; putative two component sensor kinase	941975..943252	Mycobacterium bovis BCG str. Mexico	11809142
YP_005170336.1	CDS	BCGMEX_0869c	NC_016804.1	943465	944979	R	Differs from Mb0869c by 1aa Y411H in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo, and BCG Mexico; putative oxidase	complement(943465..944979)	Mycobacterium bovis BCG str. Mexico	11809143
YP_005170337.1	CDS	lpqS	NC_016804.1	945128	945520	D	Differs from Rv0847 by 1aa V128A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo, and BCG Mexico; putative lipoprotein	945128..945520	Mycobacterium bovis BCG str. Mexico	11809144
YP_005170338.1	CDS	cysK2	NC_016804.1	945723	946841	D	Differs from Rv0848 by 1aa S93G, and from Mb0871 by 1aa V137G in BCG Pasteur, BCG Tokyo and BCG Mexico; putative cysteine synthase A	945723..946841	Mycobacterium bovis BCG str. Mexico	11809145
YP_005170339.1	CDS	BCGMEX_0872	NC_016804.1	946841	948100	D	putative integral membrane transport protein	946841..948100	Mycobacterium bovis BCG str. Mexico	11809146
YP_005170340.1	CDS	BCGMEX_0873	NC_016804.1	948097	948429	D	putative transposase	948097..948429	Mycobacterium bovis BCG str. Mexico	11809147
YP_005170341.1	CDS	BCGMEX_0874c	NC_016804.1	948426	949253	R	Differs from Rv0851c by 1aa G59S and from Mb0874c by 1aa V84F in BCG Pasteur, BCG Tokyo and BCG Mexico; short-chain dehydrogenase	complement(948426..949253)	Mycobacterium bovis BCG str. Mexico	11809148
YP_005170342.1	CDS	fadD16	NC_016804.1	949344	950180	D	putative fatty-acid-CoA ligase	949344..950180	Mycobacterium bovis BCG str. Mexico	11809149
YP_005170343.1	CDS	pdc	NC_016804.1	950221	951903	R	putative pyruvate decarboxylase	complement(950221..951903)	Mycobacterium bovis BCG str. Mexico	11809150
YP_005170344.1	CDS	BCGMEX_0877	NC_016804.1	951968	952411	D	hypothetical protein	951968..952411	Mycobacterium bovis BCG str. Mexico	11809151
YP_005170345.1	CDS	far	NC_016804.1	952417	953496	D	putative fatty-acid-CoA racemase	952417..953496	Mycobacterium bovis BCG str. Mexico	11809152
YP_005170346.1	CDS	BCGMEX_0879	NC_016804.1	953609	954013	D	hypothetical protein	953609..954013	Mycobacterium bovis BCG str. Mexico	11809153
YP_005170347.1	CDS	BCGMEX_0880	NC_016804.1	954041	954514	D	hypothetical protein	954041..954514	Mycobacterium bovis BCG str. Mexico	11809154
YP_005170348.1	CDS	BCGMEX_0881c	NC_016804.1	954511	955704	R	putative aminotransferase	complement(954511..955704)	Mycobacterium bovis BCG str. Mexico	11809155
YP_005170349.1	CDS	fadA	NC_016804.1	955861	957072	D	Differs from Rv0859 by 1aa G150S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; acyl-CoA acetyltransferase	955861..957072	Mycobacterium bovis BCG str. Mexico	11809156
YP_005170350.1	CDS	fadB	NC_016804.1	957077	959239	D	Differs from Rv0860 by 1aa T701A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative fatty oxidation protein	957077..959239	Mycobacterium bovis BCG str. Mexico	11809157
YP_005170351.1	CDS	BCGMEX_0884c	NC_016804.1	959307	960935	R	Differs from Rv0861c by 1aa A258V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative DNA helicase	complement(959307..960935)	Mycobacterium bovis BCG str. Mexico	11809158
YP_005170352.1	CDS	BCGMEX_0885c	NC_016804.1	961073	963343	R	Differs from Rv0862c by 2aa F224L and S749L, and from Mb0885c by 1aa F224L in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(961073..963343)	Mycobacterium bovis BCG str. Mexico	11809159
YP_005170353.1	CDS	BCGMEX_0886	NC_016804.1	963330	963611	D	hypothetical protein	963330..963611	Mycobacterium bovis BCG str. Mexico	11809160
YP_005170354.1	CDS	moaC2	NC_016804.1	963695	964123	D	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a single base deletion leads to a different NH2 part compared to its homolog in Mycobacterium tuberculosis strain H37Rv; molybdenum cofactor biosynthesis protein C	963695..964123	Mycobacterium bovis BCG str. Mexico	11809161
YP_005170355.1	CDS	mog	NC_016804.1	964120	964602	D	putative molybdopterin biosynthesis mog protein	964120..964602	Mycobacterium bovis BCG str. Mexico	11809162
YP_005170356.1	CDS	moaE2	NC_016804.1	964599	965024	D	Molybdopterin converting factor subunit 2; molybdenum cofactor biosynthesis protein E	964599..965024	Mycobacterium bovis BCG str. Mexico	11809163
YP_005170357.1	CDS	rpfA	NC_016804.1	965042	966265	R	In Mycobacterium bovis, a 240 bp deletion leads to a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico(327 aa versus 407 aa). Differs from Rv0867c by 1aa E235D in BCG Pasteur, BCG Tokyo and BCG Mexico; putative resuscitation-promoting factor	complement(965042..966265)	Mycobacterium bovis BCG str. Mexico	11809164
YP_005170358.1	CDS	moaD2	NC_016804.1	966713	966991	R	molybdenum cofactor biosynthesis protein D2	complement(966713..966991)	Mycobacterium bovis BCG str. Mexico	11809165
YP_005170359.1	CDS	moaA	NC_016804.1	966995	968077	R	molybdenum cofactor biosynthesis protein A	complement(966995..968077)	Mycobacterium bovis BCG str. Mexico	11809166
YP_005170360.1	CDS	BCGMEX_0893c	NC_016804.1	968074	968463	R	integral membrane protein	complement(968074..968463)	Mycobacterium bovis BCG str. Mexico	11809167
YP_005170361.1	CDS	cspB	NC_016804.1	968628	969035	D	putative cold shock-like protein B	968628..969035	Mycobacterium bovis BCG str. Mexico	11809168
YP_005170362.1	CDS	PE_PGRS15	NC_016804.1	969154	970983	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 9 bp in-frame insertion (compared to Mycobacterium tuberculosis strain H37Rv), leads to a lightly longer product (609 aa versus 606 aa). In Mycobacterium bovis, an additional 3 bp in-frame deletion (compared to Mycobacterium tuberculosis strain H37Rv, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico) leads to a product of 608 aa; PE PGRS family protein	complement(969154..970983)	Mycobacterium bovis BCG str. Mexico	11809169
YP_005170363.1	CDS	fadE10	NC_016804.1	971244	973196	D	putative acyl-CoA dehydrogenase	971244..973196	Mycobacterium bovis BCG str. Mexico	11809170
YP_005170364.1	CDS	BCGMEX_0897c	NC_016804.1	973285	974445	R	hypothetical protein	complement(973285..974445)	Mycobacterium bovis BCG str. Mexico	11809171
YP_005170365.1	CDS	BCGMEX_0898c	NC_016804.1	974545	975033	R	hypothetical protein	complement(974545..975033)	Mycobacterium bovis BCG str. Mexico	11809172
YP_005170366.1	CDS	BCGMEX_0899c	NC_016804.1	975030	976676	R	Differs from Mb0900c by 1aa D26G in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(975030..976676)	Mycobacterium bovis BCG str. Mexico	11809173
YP_005170367.1	CDS	BCGMEX_0900	NC_016804.1	976814	977602	D	hypothetical protein	976814..977602	Mycobacterium bovis BCG str. Mexico	11809174
YP_005170368.1	CDS	PPE13	NC_016804.1	977611	978939	R	In Mycobacterium bovis, Mycobaterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a single base deletion leads to a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (438 aa versus 443 aa). Differs from Rv0878c and Mb0902c by 1aa K436Q in BCG Pasteur, BCG Tokyo and BCG Mexico; PPE family protein	complement(977611..978939)	Mycobacterium bovis BCG str. Mexico	11809175
YP_005170369.1	CDS	BCGMEX_0902c	NC_016804.1	979217	979492	R	transmembrane protein	complement(979217..979492)	Mycobacterium bovis BCG str. Mexico	11809176
YP_005170370.1	CDS	BCGMEX_0903	NC_016804.1	979670	980101	D	MarR-family transcriptional regulator	979670..980101	Mycobacterium bovis BCG str. Mexico	11809177
YP_005170371.1	CDS	BCGMEX_0904	NC_016804.1	980098	980964	D	putative rRNA methylase	980098..980964	Mycobacterium bovis BCG str. Mexico	11809178
YP_005170372.1	CDS	BCGMEX_0905	NC_016804.1	980961	981245	D	transmembrane protein	980961..981245	Mycobacterium bovis BCG str. Mexico	11809179
YP_005170373.1	CDS	BCGMEX_0906c	NC_016804.1	981242	982003	R	hypothetical protein	complement(981242..982003)	Mycobacterium bovis BCG str. Mexico	11809180
YP_005170374.1	CDS	serC	NC_016804.1	982160	983290	R	phosphoserine aminotransferase	complement(982160..983290)	Mycobacterium bovis BCG str. Mexico	11809181
YP_005170375.1	CDS	BCGMEX_0908	NC_016804.1	983498	984520	D	hypothetical protein	983498..984520	Mycobacterium bovis BCG str. Mexico	11809182
YP_005170376.1	CDS	fprB	NC_016804.1	984539	986266	D	putative NADPH:adrenodoxin oxidoreductase	984539..986266	Mycobacterium bovis BCG str. Mexico	11809183
YP_005170377.1	CDS	BCGMEX_0910c	NC_016804.1	986249	986707	R	hypothetical protein	complement(986249..986707)	Mycobacterium bovis BCG str. Mexico	11809184
YP_005170378.1	CDS	BCGMEX_0911	NC_016804.1	987969	989441	D	hypothetical protein	987969..989441	Mycobacterium bovis BCG str. Mexico	11809185
YP_005170379.1	CDS	citA	NC_016804.1	989476	990597	R	Citrate synthase II	complement(989476..990597)	Mycobacterium bovis BCG str. Mexico	11809186
YP_005170380.1	CDS	BCGMEX_0913c	NC_016804.1	990684	993332	R	Differs from Rv0890c by 1aa A866P in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; probably LuxR-family; putative transcriptional regulatory protein	complement(990684..993332)	Mycobacterium bovis BCG str. Mexico	11809187
YP_005170381.1	CDS	BCGMEX_0914c	NC_016804.1	993334	994191	R	Differs from Rv0891c by 1aa G37V in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transcriptional regulatory protein	complement(993334..994191)	Mycobacterium bovis BCG str. Mexico	11809188
YP_005170382.1	CDS	BCGMEX_0915	NC_016804.1	994589	996076	D	putative monooxygenase	994589..996076	Mycobacterium bovis BCG str. Mexico	11809189
YP_005170383.1	CDS	BCGMEX_0916c	NC_016804.1	996054	997031	R	putative S-adenosyl-L-methionine-dependent methyltransferase	complement(996054..997031)	Mycobacterium bovis BCG str. Mexico	11809190
YP_005170384.1	CDS	BCGMEX_0917	NC_016804.1	997260	998441	D	putative transcriptional regulatory protein, LuxR-family	997260..998441	Mycobacterium bovis BCG str. Mexico	11809191
YP_005170385.1	CDS	BCGMEX_0918	NC_016804.1	998518	1000035	D	hypothetical protein	998518..1000035	Mycobacterium bovis BCG str. Mexico	11809192
YP_005170386.1	CDS	gltA	NC_016804.1	1000225	1001520	D	Differs from Rv0896 by 1aa, A421T in Mycobacterium bovis, BCG Pasteur,BCG Tokyo and BCG Mexico; Type II Citrate synthase	1000225..1001520	Mycobacterium bovis BCG str. Mexico	11809193
YP_005170387.1	CDS	BCGMEX_0920c	NC_016804.1	1001561	1003168	R	putative oxidoreductase	complement(1001561..1003168)	Mycobacterium bovis BCG str. Mexico	11809194
YP_005170388.1	CDS	BCGMEX_0921c	NC_016804.1	1003194	1003457	R	hypothetical protein	complement(1003194..1003457)	Mycobacterium bovis BCG str. Mexico	11809195
YP_005170389.1	CDS	ompA	NC_016804.1	1003565	1004545	D	putative outer membrane protein	1003565..1004545	Mycobacterium bovis BCG str. Mexico	11809196
YP_005170390.1	CDS	BCGMEX_0923	NC_016804.1	1004558	1004710	D	hypothetical protein	1004558..1004710	Mycobacterium bovis BCG str. Mexico	11809197
YP_005170391.1	CDS	BCGMEX_0924	NC_016804.1	1004710	1005237	D	exported or membrane protein	1004710..1005237	Mycobacterium bovis BCG str. Mexico	11809198
YP_005170392.1	CDS	prrB	NC_016804.1	1005254	1006594	R	Two component sensor histidine kinase prrB	complement(1005254..1006594)	Mycobacterium bovis BCG str. Mexico	11809199
YP_005170393.1	CDS	prrA	NC_016804.1	1006605	1007315	R	Two component response transcriptional regulatory protein	complement(1006605..1007315)	Mycobacterium bovis BCG str. Mexico	11809200
YP_005170394.1	CDS	accD3	NC_016804.1	1007446	1008933	R	putative acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	complement(1007446..1008933)	Mycobacterium bovis BCG str. Mexico	11809201
YP_005170395.1	CDS	echA6	NC_016804.1	1008960	1009691	D	Enoyl-CoA hydratase	1008960..1009691	Mycobacterium bovis BCG str. Mexico	11809202
YP_005170396.1	CDS	BCGMEX_0929	NC_016804.1	1009697	1010815	D	hypothetical protein	1009697..1010815	Mycobacterium bovis BCG str. Mexico	11809203
YP_005170397.1	CDS	BCGMEX_0930	NC_016804.1	1010908	1012488	D	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium bovis, a frameshift due to a single base insertion leads to a shorter product with a different NH2 part compared to its homolog in Mycobacterium tuberculosis strain H37Rv. Differs from Rv0907 by 1aa, L322P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1010908..1012488	Mycobacterium bovis BCG str. Mexico	11809204
YP_005170398.1	CDS	ctpE	NC_016804.1	1012485	1014878	D	putative metal cation transporter ATPase P-type	1012485..1014878	Mycobacterium bovis BCG str. Mexico	11809205
YP_005170399.1	CDS	BCGMEX_0932	NC_016804.1	1015435	1015614	D	Differs from Rv0909 by 1aa, Q45H in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1015435..1015614	Mycobacterium bovis BCG str. Mexico	11809206
YP_005170400.1	CDS	BCGMEX_0933	NC_016804.1	1015620	1016054	D	hypothetical protein	1015620..1016054	Mycobacterium bovis BCG str. Mexico	11809207
YP_005170401.1	CDS	BCGMEX_0934	NC_016804.1	1016152	1016925	D	hypothetical protein	1016152..1016925	Mycobacterium bovis BCG str. Mexico	11809208
YP_005170402.1	CDS	BCGMEX_0935	NC_016804.1	1016990	1017439	D	transmembrane protein	1016990..1017439	Mycobacterium bovis BCG str. Mexico	11809209
YP_005170403.1	CDS	BCGMEX_0936c	NC_016804.1	1017971	1019479	R	putative dioxygenase	complement(1017971..1019479)	Mycobacterium bovis BCG str. Mexico	11809210
YP_005170404.1	CDS	BCGMEX_0937c	NC_016804.1	1019481	1020719	R	Lipid carrier protein or keto acyl-CoA thiolase	complement(1019481..1020719)	Mycobacterium bovis BCG str. Mexico	11809211
YP_005170405.1	CDS	PPE14	NC_016804.1	1020812	1022083	R	PPE family protein	complement(1020812..1022083)	Mycobacterium bovis BCG str. Mexico	11809212
YP_005170406.1	CDS	PE7	NC_016804.1	1022098	1022397	R	PE family protein	complement(1022098..1022397)	Mycobacterium bovis BCG str. Mexico	11809213
YP_005170407.1	CDS	betP	NC_016804.1	1022841	1024622	D	putative glycine betaine transport integral membrane protein	1022841..1024622	Mycobacterium bovis BCG str. Mexico	11809214
YP_005170408.1	CDS	BCGMEX_0941	NC_016804.1	1024965	1025441	D	Differs from Rv0918 by 1aa, G46S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1024965..1025441	Mycobacterium bovis BCG str. Mexico	11809215
YP_005170409.1	CDS	BCGMEX_0942	NC_016804.1	1025438	1025938	D	hypothetical protein	1025438..1025938	Mycobacterium bovis BCG str. Mexico	11809216
YP_005170410.1	CDS	BCGMEX_0943c	NC_016804.1	1026251	1027570	R	Differs from Rv0920c by 1aa, E249D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transposase	complement(1026251..1027570)	Mycobacterium bovis BCG str. Mexico	11809218
YP_005170411.1	CDS	BCGMEX_0944	NC_016804.1	1027858	1028439	D	putative resolvase	1027858..1028439	Mycobacterium bovis BCG str. Mexico	11809219
YP_005170412.1	CDS	BCGMEX_0945	NC_016804.1	1028439	1030091	D	putative transposase	1028439..1030091	Mycobacterium bovis BCG str. Mexico	11809220
YP_005170413.1	CDS	BCGMEX_0946c	NC_016804.1	1030267	1031331	R	hypothetical protein	complement(1030267..1031331)	Mycobacterium bovis BCG str. Mexico	11809221
YP_005170414.1	CDS	mntH	NC_016804.1	1031332	1032618	R	In Mycobacterium tuberculosis strain H37Rv, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, Rv0924c and Rv0925c exist as 2 genes. In Mycobacterium bovis, a single base deletion leads to a single product, Mb0948c. Differs from Rv0924c by 1aa, A216P in BCG Pasteur, BCG Tokyo and BCG Mexico; Manganese transport protein	complement(1031332..1032618)	Mycobacterium bovis BCG str. Mexico	11809222
YP_005170415.1	CDS	BCGMEX_0948c	NC_016804.1	1032650	1033387	R	In Mycobacterium tuberculosis strain H37Rv, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, Rv0924c and Rv0925c exist as 2 genes. In Mycobacterium bovis, a single base deletion leads to a single product, Mb0948c; Nramp; Mramp; divalent cation-transport integral membrane protein	complement(1032650..1033387)	Mycobacterium bovis BCG str. Mexico	11809223
YP_005170416.1	CDS	BCGMEX_0949c	NC_016804.1	1033464	1034540	R	hypothetical protein	complement(1033464..1034540)	Mycobacterium bovis BCG str. Mexico	11809224
YP_005170417.1	CDS	BCGMEX_0950c	NC_016804.1	1034594	1035385	R	short-chain dehydrogenase	complement(1034594..1035385)	Mycobacterium bovis BCG str. Mexico	11809225
YP_005170418.1	CDS	pstS3	NC_016804.1	1035657	1036769	D	periplasmic phosphate-binding lipoprotein	1035657..1036769	Mycobacterium bovis BCG str. Mexico	11809226
YP_005170419.1	CDS	pstC2	NC_016804.1	1036782	1037756	D	phosphate ABC transporter permease	1036782..1037756	Mycobacterium bovis BCG str. Mexico	11809227
YP_005170420.1	CDS	pstA1	NC_016804.1	1037753	1038667	D	Differs from Rv0930 by 1aa, T5M in Mycobacterium CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; phosphate-transport integral membrane ABC transporter	1037753..1038667	Mycobacterium bovis BCG str. Mexico	11809228
YP_005170421.1	CDS	pknDb	NC_016804.1	1038674	1039561	R	In Mycobacterium tuberculosis strain H37Rv, pknD exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a single base insertion splits pknD into 2 parts,pknDa and pknDb; Serine/threonine-protein kinase	complement(1038674..1039561)	Mycobacterium bovis BCG str. Mexico	11809229
YP_005170422.1	CDS	pknDa	NC_016804.1	1039794	1040669	R	In Mycobacterium tuberculosis strain H37Rv, pknD exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a single base insertion splits pknD into 2 parts,pknDa and pknDb; Transmembrane serine/threonine-protein kinase D	complement(1039794..1040669)	Mycobacterium bovis BCG str. Mexico	11809230
YP_005170423.1	CDS	pstS2	NC_016804.1	1040691	1041803	R	Differs from Rv0932c by 1aa, A115S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; periplasmic phosphate-binding protein	complement(1040691..1041803)	Mycobacterium bovis BCG str. Mexico	11809231
YP_005170424.1	CDS	pstBa	NC_016804.1	1042019	1042234	D	In Mycobacterium tuberculosis strain H37Rv, pstB exists as a single gene. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium bovis, a frameshift due to a single base insertion splits pstB into 2 parts, pstBa and pstBb; phosphate-transport protein ABC transporter	1042019..1042234	Mycobacterium bovis BCG str. Mexico	11809232
YP_005170425.1	CDS	pstBb	NC_016804.1	1042209	1042850	D	In Mycobacterium tuberculosis strain H37Rv, pstB exists as a single gene. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium bovis, a frameshift due to a single base insertion splits pstB into 2 parts, pstBa and pstBb; phosphate-transport protein ABC transporter	1042209..1042850	Mycobacterium bovis BCG str. Mexico	11809233
YP_005170426.1	CDS	pstS1	NC_016804.1	1042871	1043995	D	Differs from Rv0934 by 1aa, A352V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; periplasmic phosphate-binding lipoprotein	1042871..1043995	Mycobacterium bovis BCG str. Mexico	11809234
YP_005170427.1	CDS	pstC1	NC_016804.1	1044055	1045071	D	phosphate-transport integral membrane ABC transporter	1044055..1045071	Mycobacterium bovis BCG str. Mexico	11809235
YP_005170428.1	CDS	pstA2	NC_016804.1	1045073	1045978	D	phosphate-transport integral membrane ABC transporter	1045073..1045978	Mycobacterium bovis BCG str. Mexico	11809236
YP_005170429.1	CDS	BCGMEX_0962c	NC_016804.1	1045955	1046776	R	hypothetical protein	complement(1045955..1046776)	Mycobacterium bovis BCG str. Mexico	11809237
YP_005170430.1	CDS	BCGMEX_0963	NC_016804.1	1046892	1049171	D	putative ATP dependent DNA ligase	1046892..1049171	Mycobacterium bovis BCG str. Mexico	11809238
YP_005170431.1	CDS	BCGMEX_0964	NC_016804.1	1049168	1051102	D	cyclase/dehydrase; putative 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase	1049168..1051102	Mycobacterium bovis BCG str. Mexico	11809239
YP_005170432.1	CDS	BCGMEX_0965c	NC_016804.1	1051349	1052215	R	putative oxidoreductase	complement(1051349..1052215)	Mycobacterium bovis BCG str. Mexico	11809240
YP_005170433.1	CDS	BCGMEX_0966c	NC_016804.1	1052300	1053073	R	hypothetical protein	complement(1052300..1053073)	Mycobacterium bovis BCG str. Mexico	11809241
YP_005170434.1	CDS	BCGMEX_0967	NC_016804.1	1053116	1053394	D	hypothetical protein	1053116..1053394	Mycobacterium bovis BCG str. Mexico	11809242
YP_005170435.1	CDS	BCGMEX_0968c	NC_016804.1	1053452	1054492	R	putative monooxygenase	complement(1053452..1054492)	Mycobacterium bovis BCG str. Mexico	11809243
YP_005170436.1	CDS	BCGMEX_0969	NC_016804.1	1054521	1054997	D	Formamidopyrimidine-DNA glycosylase	1054521..1054997	Mycobacterium bovis BCG str. Mexico	11809244
YP_005170437.1	CDS	BCGMEX_0970	NC_016804.1	1055003	1055764	D	Differs from Rv0945 by 1aa, G180R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative short-chain type dehydrogenase/reductase	1055003..1055764	Mycobacterium bovis BCG str. Mexico	11809245
YP_005170438.1	CDS	pgi	NC_016804.1	1055780	1057441	R	putative Glucose-6-phosphate isomerase	complement(1055780..1057441)	Mycobacterium bovis BCG str. Mexico	11809246
YP_005170439.1	CDS	BCGMEX_0972c	NC_016804.1	1058056	1058286	R	putative mycolyl transferase	complement(1058056..1058286)	Mycobacterium bovis BCG str. Mexico	11809247
YP_005170440.1	CDS	BCGMEX_0973c	NC_016804.1	1058402	1058719	R	hypothetical protein	complement(1058402..1058719)	Mycobacterium bovis BCG str. Mexico	11809248
YP_005170441.1	CDS	uvrD1	NC_016804.1	1059016	1061331	D	putative ATP dependent DNA helicase	1059016..1061331	Mycobacterium bovis BCG str. Mexico	11809249
YP_005170442.1	CDS	BCGMEX_0975c	NC_016804.1	1061412	1062410	R	hypothetical protein	complement(1061412..1062410)	Mycobacterium bovis BCG str. Mexico	11809250
YP_005170443.1	CDS	sucC	NC_016804.1	1062720	1063883	D	Differs from Rv0951 by 1aa, A261V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; succinyl-CoA synthetase subunit beta	1062720..1063883	Mycobacterium bovis BCG str. Mexico	11809251
YP_005170444.1	CDS	sucD	NC_016804.1	1063896	1064807	D	Differs from Rv0952 by 1aa, K209R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; succinyl-CoA synthetase subunit alpha	1063896..1064807	Mycobacterium bovis BCG str. Mexico	11809252
YP_005170445.1	CDS	BCGMEX_0978c	NC_016804.1	1064870	1065718	R	Differs from Rv0953c and Mb0978c by 1aa, A50T in Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative oxidoreductase	complement(1064870..1065718)	Mycobacterium bovis BCG str. Mexico	11809253
YP_005170446.1	CDS	BCGMEX_0979	NC_016804.1	1065883	1066794	D	transmembrane protein	1065883..1066794	Mycobacterium bovis BCG str. Mexico	11809254
YP_005170447.1	CDS	BCGMEX_0980	NC_016804.1	1066834	1068201	D	integral membrane protein	1066834..1068201	Mycobacterium bovis BCG str. Mexico	11809255
YP_005170448.1	CDS	purN	NC_016804.1	1068317	1068964	D	phosphoribosylglycinamide formyltransferase	1068317..1068964	Mycobacterium bovis BCG str. Mexico	11809256
YP_005170449.1	CDS	purH	NC_016804.1	1068961	1070532	D	IMP cyclohydrolase; phosphoribosylaminoimidazolecarboxamide formyltransferase	1068961..1070532	Mycobacterium bovis BCG str. Mexico	11809257
YP_005170450.1	CDS	BCGMEX_0983	NC_016804.1	1070639	1072018	D	Differs from Rv0958 by 1aa, P274S in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative magnesium chelatase	1070639..1072018	Mycobacterium bovis BCG str. Mexico	11809258
YP_005170451.1	CDS	BCGMEX_0984	NC_016804.1	1072011	1074029	D	hypothetical protein	1072011..1074029	Mycobacterium bovis BCG str. Mexico	11809259
YP_005170452.1	CDS	BCGMEX_0985	NC_016804.1	1074083	1074304	D	hypothetical protein	1074083..1074304	Mycobacterium bovis BCG str. Mexico	11809260
YP_005170453.1	CDS	BCGMEX_0986	NC_016804.1	1074301	1074684	D	hypothetical protein	1074301..1074684	Mycobacterium bovis BCG str. Mexico	11809261
YP_005170454.1	CDS	BCGMEX_0987	NC_016804.1	1074830	1075177	D	putative integral membrane protein	1074830..1075177	Mycobacterium bovis BCG str. Mexico	11809262
YP_005170455.1	CDS	lprP	NC_016804.1	1075196	1075870	R	Differs from Rv0962c by 1aa, L186P in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative lipoprotein	complement(1075196..1075870)	Mycobacterium bovis BCG str. Mexico	11809263
YP_005170456.1	CDS	BCGMEX_0989c	NC_016804.1	1076053	1076853	R	Differs from Rv0963c and Mb0988c by 1aa, S258G in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1076053..1076853)	Mycobacterium bovis BCG str. Mexico	11809264
YP_005170457.1	CDS	BCGMEX_0990c	NC_016804.1	1076952	1077434	R	Differs from Rv0964c by 1aa, T124P in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1076952..1077434)	Mycobacterium bovis BCG str. Mexico	11809265
YP_005170458.1	CDS	BCGMEX_0991c	NC_016804.1	1077534	1077953	R	Differs from Rv0965c by 1aa, H94R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1077534..1077953)	Mycobacterium bovis BCG str. Mexico	11809266
YP_005170459.1	CDS	BCGMEX_0992c	NC_016804.1	1077989	1078591	R	Differs from Rv0966c by 2aa, A175V, G186W in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1077989..1078591)	Mycobacterium bovis BCG str. Mexico	11809267
YP_005170460.1	CDS	BCGMEX_0993	NC_016804.1	1078730	1079089	D	hypothetical protein	1078730..1079089	Mycobacterium bovis BCG str. Mexico	11809268
YP_005170461.1	CDS	BCGMEX_0994	NC_016804.1	1079146	1079442	D	hypothetical protein	1079146..1079442	Mycobacterium bovis BCG str. Mexico	11809269
YP_005170462.1	CDS	BCGMEX_0995	NC_016804.1	1079498	1081810	D	Differs from Rv0969 by 1aa, N484D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative metal cation transporter P-type atpase	1079498..1081810	Mycobacterium bovis BCG str. Mexico	11809270
YP_005170463.1	CDS	BCGMEX_0996	NC_016804.1	1081807	1082439	D	putative integral membrane protein	1081807..1082439	Mycobacterium bovis BCG str. Mexico	11809271
YP_005170464.1	CDS	echA7	NC_016804.1	1082530	1083339	R	Enoyl-CoA hydratase	complement(1082530..1083339)	Mycobacterium bovis BCG str. Mexico	11809272
YP_005170465.1	CDS	fadE12	NC_016804.1	1083339	1084505	R	Differs from Rv0972c by 1aa, H236Q in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative acyl-CoA dehydrogenase	complement(1083339..1084505)	Mycobacterium bovis BCG str. Mexico	11809273
YP_005170466.1	CDS	accA2	NC_016804.1	1084502	1086505	R	Differs from Rv0973c by 1aa, F220I in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative acetyl-/propionyl-coenzyme A carboxylase alpha chain subunit alpha	complement(1084502..1086505)	Mycobacterium bovis BCG str. Mexico	11809274
YP_005170467.1	CDS	accD2	NC_016804.1	1086511	1088100	R	Differs from Rv0974c by 1aa, K51N in Mycobacteium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative acetyl-/propionyl-coa carboxylase subunit beta	complement(1086511..1088100)	Mycobacterium bovis BCG str. Mexico	11809275
YP_005170468.1	CDS	fadE13	NC_016804.1	1088103	1089251	R	In Mycobacterium bovis, a frameshift due to a single base deletion leads to a shorter product with a different COOH part compared to its homolog in Mycobacterium tuberculosis strain H37Rv, Mycobacterium bovis BCG pasteur, BCG Tokyo and BCG Mexico; acyl-CoA dehydrogenase FadE13	complement(1088103..1089251)	Mycobacterium bovis BCG str. Mexico	11809276
YP_005170469.1	CDS	BCGMEX_1002c	NC_016804.1	1089248	1090930	R	hypothetical protein	complement(1089248..1090930)	Mycobacterium bovis BCG str. Mexico	11809277
YP_005170470.1	CDS	PE_PGRS16	NC_016804.1	1091129	1093900	D	PE-PGRS family protein	1091129..1093900	Mycobacterium bovis BCG str. Mexico	11809278
YP_005170471.1	CDS	PE_PGRS17	NC_016804.1	1094117	1095124	R	In Mycobacterium bovis, Mycobacterim bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 115 bp to 127 bp substitution leads to as lightly longer product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (335 aa versus 331aa); PE PGRS family protein	complement(1094117..1095124)	Mycobacterium bovis BCG str. Mexico	11809279
YP_005170472.1	CDS	BCGMEX_1005c	NC_016804.1	1095438	1095632	R	hypothetical protein	complement(1095438..1095632)	Mycobacterium bovis BCG str. Mexico	11809280
YP_005170473.1	CDS	rpmF	NC_016804.1	1095654	1095827	D	50S ribosomal protein L32	1095654..1095827	Mycobacterium bovis BCG str. Mexico	11809281
YP_005170474.1	CDS	PE_PGRS18	NC_016804.1	1095846	1097219	R	Differs from Rv0980c by 1aa, Q43H, and from Mb1006c by 1aa, A270T in Mycobacteium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; PE-PGRS family protein	complement(1095846..1097219)	Mycobacterium bovis BCG str. Mexico	11809282
YP_005170475.1	CDS	mprA	NC_016804.1	1097584	1098276	D	Differs from Rv0981 by 1aa, S70G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Response regulator	1097584..1098276	Mycobacterium bovis BCG str. Mexico	11809283
YP_005170476.1	CDS	mprB	NC_016804.1	1098276	1099790	D	Differs from Rv0982 by 1aa, H339L in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative two component sensor kinase	1098276..1099790	Mycobacterium bovis BCG str. Mexico	11809284
YP_005170477.1	CDS	BCGMEX_1010	NC_016804.1	1099834	1101228	D	Differs from Rv0983 by 1aa, P390L in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico; putative serine protease	1099834..1101228	Mycobacterium bovis BCG str. Mexico	11809285
YP_005170478.1	CDS	moaB2	NC_016804.1	1101228	1101773	D	putative pterin-4-alpha-carbinolamine dehydratase	1101228..1101773	Mycobacterium bovis BCG str. Mexico	11809286
YP_005170479.1	CDS	mscL	NC_016804.1	1101793	1102248	R	Differs from Rv0985c and Mb1011c by 1aa, L145R in BCG Pasteur, BCG Tokyo and BCG Mexico; Large-conductance mechanosensitive channel	complement(1101793..1102248)	Mycobacterium bovis BCG str. Mexico	11809287
YP_005170480.1	CDS	BCGMEX_1013	NC_016804.1	1102571	1103317	D	Differs from Rv0986 by 1aa, L228V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico; putative adhesion component transport ATP-binding protein ABC transporter	1102571..1103317	Mycobacterium bovis BCG str. Mexico	11809288
YP_005170481.1	CDS	BCGMEX_1014	NC_016804.1	1103310	1105877	D	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium tuberculosis strain H37Rv, Rv0987 exists as a single gene. In Mycobacterium bovis, a single base transition introduces a stop codon that splits Rv0987 in two parts, Mb1013 and Mb1014. Differs from Rv0987 by 1aa, V717F in BCG Pasteur, BCG Tokyo and BCG Mexico; putative adhesion component transport transmembrane protein ABC transporter	1103310..1105877	Mycobacterium bovis BCG str. Mexico	11809289
YP_005170482.1	CDS	BCGMEX_1015	NC_016804.1	1105884	1107044	D	Differs from Rv0988 by 2aa, I57V, D135Y in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1105884..1107044	Mycobacterium bovis BCG str. Mexico	11809290
YP_005170483.1	CDS	grcC2	NC_016804.1	1107173	1108150	R	Differs from Rv0989c by 1aa, V321I in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative polyprenyl-diphosphate synthase	complement(1107173..1108150)	Mycobacterium bovis BCG str. Mexico	11809291
YP_005170484.1	CDS	BCGMEX_1017c	NC_016804.1	1108211	1108867	R	Differs from Rv0990c by 1aa, A54S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1108211..1108867)	Mycobacterium bovis BCG str. Mexico	11809292
YP_005170485.1	CDS	BCGMEX_1018c	NC_016804.1	1108940	1109272	R	hypothetical protein	complement(1108940..1109272)	Mycobacterium bovis BCG str. Mexico	11809293
YP_005170486.1	CDS	BCGMEX_1019c	NC_016804.1	1109346	1109939	R	Differs from Rv0992c by 2aa, I3M, S135G, and from Mb1019c by 1aa, S135G in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1109346..1109939)	Mycobacterium bovis BCG str. Mexico	11809294
YP_005170487.1	CDS	galU	NC_016804.1	1110040	1110960	D	Differs from Rv0993 by 1aa, R235Q in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; putative UTP--glucose-1-phosphate uridylyltransferase	1110040..1110960	Mycobacterium bovis BCG str. Mexico	11809295
YP_005170488.1	CDS	moeA1	NC_016804.1	1111037	1112317	D	Differs from Rv0994 by 1aa, G230C in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative molybdopterin biosynthesis protein	1111037..1112317	Mycobacterium bovis BCG str. Mexico	11809296
YP_005170489.1	CDS	rimJ	NC_016804.1	1112380	1112991	D	putative ribosomal-protein-S5p-alanine acetyltransferase	1112380..1112991	Mycobacterium bovis BCG str. Mexico	11809297
YP_005170490.1	CDS	BCGMEX_1023	NC_016804.1	1113152	1114228	D	Differs from Rv0996 by 1aa, D92G, and from Mb1023 by 1aa, D92G in BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	1113152..1114228	Mycobacterium bovis BCG str. Mexico	11809298
YP_005170491.1	CDS	BCGMEX_1024	NC_016804.1	1114402	1114632	D	hypothetical protein	1114402..1114632	Mycobacterium bovis BCG str. Mexico	11809300
YP_005170492.1	CDS	BCGMEX_1025	NC_016804.1	1114629	1114880	D	hypothetical protein	1114629..1114880	Mycobacterium bovis BCG str. Mexico	11809301
YP_005170493.1	CDS	BCGMEX_1026	NC_016804.1	1115061	1115492	D	hypothetical protein	1115061..1115492	Mycobacterium bovis BCG str. Mexico	11809302
YP_005170494.1	CDS	BCGMEX_1027	NC_016804.1	1115516	1116517	D	hypothetical protein	1115516..1116517	Mycobacterium bovis BCG str. Mexico	11809303
YP_005170495.1	CDS	BCGMEX_1028	NC_016804.1	1116535	1117293	D	hypothetical protein	1116535..1117293	Mycobacterium bovis BCG str. Mexico	11809304
YP_005170496.1	CDS	BCGMEX_1029c	NC_016804.1	1117299	1117916	R	hypothetical protein	complement(1117299..1117916)	Mycobacterium bovis BCG str. Mexico	11809305
YP_005170497.1	CDS	arcA	NC_016804.1	1117953	1119161	D	Arginine deiminase	1117953..1119161	Mycobacterium bovis BCG str. Mexico	11809306
YP_005170498.1	CDS	BCGMEX_1031c	NC_016804.1	1119196	1120707	R	Differs from Rv1002c by 1aa, L115V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico.; hypothetical protein	complement(1119196..1120707)	Mycobacterium bovis BCG str. Mexico	11809307
YP_005170499.1	CDS	BCGMEX_1032	NC_016804.1	1120790	1121647	D	Tetrapyrrole (Corrin-Porphyrin) methylase family protein UPF0011	1120790..1121647	Mycobacterium bovis BCG str. Mexico	11809308
YP_005170500.1	CDS	BCGMEX_1033c	NC_016804.1	1121657	1122916	R	hypothetical protein	complement(1121657..1122916)	Mycobacterium bovis BCG str. Mexico	11809309
YP_005170501.1	CDS	BCGMEX_1034c	NC_016804.1	1122990	1124426	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, as in Mycobacterium bovis, a single base transition leads to a longer product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (478 aa versus 458 aa); Para-aminobenzoate synthase component I	complement(1122990..1124426)	Mycobacterium bovis BCG str. Mexico	11809310
YP_005170502.1	CDS	BCGMEX_1035	NC_016804.1	1124482	1126185	D	Differs from Rv1006 by 1aa, S535P, and from Mb1033 by 1aa, N25S in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1124482..1126185	Mycobacterium bovis BCG str. Mexico	11809311
YP_005170503.1	CDS	metS	NC_016804.1	1126212	1127771	R	Differs from Rv1007c by 1aa, G39R in BCG Pasteur, BCG Tokyo and BCG Mexico; methionyl-tRNA synthetase	complement(1126212..1127771)	Mycobacterium bovis BCG str. Mexico	11809312
YP_005170504.1	CDS	tatD	NC_016804.1	1127857	1128651	D	Differs from Rv1008 by 1aa, N186T in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; YjjV protein; deoxyribonuclease	1127857..1128651	Mycobacterium bovis BCG str. Mexico	11809313
YP_005170505.1	CDS	rpfB	NC_016804.1	1128859	1129947	D	Differs from Rv1009 by 2aa, E282G, V357A in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative resuscitation-promoting factor	1128859..1129947	Mycobacterium bovis BCG str. Mexico	11809314
YP_005170506.1	CDS	ksgA	NC_016804.1	1129920	1130873	D	dimethyladenosine transferase	1129920..1130873	Mycobacterium bovis BCG str. Mexico	11809315
YP_005170507.1	CDS	ispE	NC_016804.1	1130959	1131879	D	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	1130959..1131879	Mycobacterium bovis BCG str. Mexico	11809316
YP_005170508.1	CDS	BCGMEX_1041	NC_016804.1	1131876	1132190	D	In Mycobacterium tuberculosis strain H37Rv, Rv1012 exists as a single gene. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium bovis, a frameshift due to a single base insertion leads to a different NH2 terminus. Differs from Rv1012 by 1aa, N65S; hypothetical protein	1131876..1132190	Mycobacterium bovis BCG str. Mexico	11809317
YP_005170509.1	CDS	pks16	NC_016804.1	1132394	1134028	D	putative polyketide synthase pks16	1132394..1134028	Mycobacterium bovis BCG str. Mexico	11809318
YP_005170510.1	CDS	pth	NC_016804.1	1134102	1134677	R	peptidyl-tRNA hydrolase	complement(1134102..1134677)	Mycobacterium bovis BCG str. Mexico	11809319
YP_005170511.1	CDS	rplY	NC_016804.1	1134690	1135337	R	50s ribosomal protein L25p	complement(1134690..1135337)	Mycobacterium bovis BCG str. Mexico	11809320
YP_005170512.1	CDS	lpqT	NC_016804.1	1135471	1136229	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium bovis, a frameshift due to a 5 bp deletion leads to a longer product with a different COOH part compared to its homolog in Mycobacterium tuberculosis strain H37Rv; putative lipoprotein	complement(1135471..1136229)	Mycobacterium bovis BCG str. Mexico	11809321
YP_005170513.1	CDS	prsA	NC_016804.1	1136265	1137245	R	Differs from Rv1017c by 1aa, H204R in Mycobacterium bovis BCG Mexico; ribose-phosphate pyrophosphokinase	complement(1136265..1137245)	Mycobacterium bovis BCG str. Mexico	11809322
YP_005170514.1	CDS	glmU	NC_016804.1	1137337	1138824	R	Differs from Mb1046c by 2aa, E160G, E246Q in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; bifunctional protein: UDP-N-acetylglucosamine pyrophosphorylase/ Glucosamine-1-phosphate N-acetyltransferase	complement(1137337..1138824)	Mycobacterium bovis BCG str. Mexico	11809323
YP_005170515.1	CDS	BCGMEX_1048	NC_016804.1	1139079	1139672	D	putative transcriptional regulatory protein, TetR-family	1139079..1139672	Mycobacterium bovis BCG str. Mexico	11809325
YP_005170516.1	CDS	mfd	NC_016804.1	1139731	1143435	D	putative transcription-repair coupling factor	1139731..1143435	Mycobacterium bovis BCG str. Mexico	11809326
YP_005170517.1	CDS	BCGMEX_1050	NC_016804.1	1143435	1144412	D	Nucleoside triphosphate pyrophosphohydrolase	1143435..1144412	Mycobacterium bovis BCG str. Mexico	11809327
YP_005170518.1	CDS	lpqU	NC_016804.1	1144500	1145231	D	Differs from Rv1022 by 1aa, P33T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative lipoprotein	1144500..1145231	Mycobacterium bovis BCG str. Mexico	11809328
YP_005170519.1	CDS	eno	NC_016804.1	1145328	1146617	D	enolase	1145328..1146617	Mycobacterium bovis BCG str. Mexico	11809329
YP_005170520.1	CDS	BCGMEX_1053	NC_016804.1	1146622	1147308	D	hypothetical protein	1146622..1147308	Mycobacterium bovis BCG str. Mexico	11809330
YP_005170521.1	CDS	BCGMEX_1054	NC_016804.1	1147325	1147792	D	hypothetical protein	1147325..1147792	Mycobacterium bovis BCG str. Mexico	11809331
YP_005170522.1	CDS	BCGMEX_1055	NC_016804.1	1147783	1148742	D	hypothetical protein	1147783..1148742	Mycobacterium bovis BCG str. Mexico	11809332
YP_005170523.1	CDS	kdpE	NC_016804.1	1149191	1149871	R	putative transcriptional regulatory protein	complement(1149191..1149871)	Mycobacterium bovis BCG str. Mexico	11809333
YP_005170524.1	CDS	kdpD	NC_016804.1	1149868	1152450	R	Differs from Rv1028c by 3aa, S83P, D295G, S368P, and from Mb1056c by 1aa, S83P in BCG Pasteur, BCG Tokyo and BCG Mexico; Sensor protein	complement(1149868..1152450)	Mycobacterium bovis BCG str. Mexico	11809334
YP_005170525.1	CDS	kdpF	NC_016804.1	1152684	1152776	D	hypothetical protein	1152684..1152776	Mycobacterium bovis BCG str. Mexico	11809335
YP_005170526.1	CDS	kdpA	NC_016804.1	1152776	1154491	D	potassium-transporting ATPase subunit A	1152776..1154491	Mycobacterium bovis BCG str. Mexico	11809336
YP_005170527.1	CDS	kdpB	NC_016804.1	1154488	1156617	D	potassium-transporting ATPase subunit B	1154488..1156617	Mycobacterium bovis BCG str. Mexico	11809337
YP_005170528.1	CDS	kdpC	NC_016804.1	1156617	1157186	D	potassium-transporting ATPase subunit C	1156617..1157186	Mycobacterium bovis BCG str. Mexico	11809338
YP_005170529.1	CDS	trcS	NC_016804.1	1157190	1158719	R	two component sensor histidine kinase	complement(1157190..1158719)	Mycobacterium bovis BCG str. Mexico	11809339
YP_005170530.1	CDS	trcR	NC_016804.1	1158727	1159500	R	Two component transcriptional regulator	complement(1158727..1159500)	Mycobacterium bovis BCG str. Mexico	11809340
YP_005170531.1	CDS	BCGMEX_1064c	NC_016804.1	1159682	1160071	R	putative transposase	complement(1159682..1160071)	Mycobacterium bovis BCG str. Mexico	11809341
YP_005170532.1	CDS	BCGMEX_1065c	NC_016804.1	1160139	1160825	R	putative transposase	complement(1160139..1160825)	Mycobacterium bovis BCG str. Mexico	11809342
YP_005170533.1	CDS	BCGMEX_1066c	NC_016804.1	1160859	1161197	R	putative IS1560 transposase	complement(1160859..1161197)	Mycobacterium bovis BCG str. Mexico	11809343
YP_005170534.1	CDS	esxI	NC_016804.1	1161308	1161592	R	Differs from Rv1037c by 1aa, L20Q in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative ESAT-6 like protein 1	complement(1161308..1161592)	Mycobacterium bovis BCG str. Mexico	11809344
YP_005170535.1	CDS	esxJ	NC_016804.1	1161619	1161915	R	putative EsaT-6 like protein 2	complement(1161619..1161915)	Mycobacterium bovis BCG str. Mexico	11809345
YP_005170536.1	CDS	BCGMEX_1069c	NC_016804.1	1162061	1163236	R	Differs from Rv1039c and Mb1068c by 1aa, K175N in BCG Pasteur, BCG Tokyo and BCG Mexico; PPE family protein	complement(1162061..1163236)	Mycobacterium bovis BCG str. Mexico	11809346
YP_005170537.1	CDS	PE8	NC_016804.1	1163313	1164140	R	PE family protein	complement(1163313..1164140)	Mycobacterium bovis BCG str. Mexico	11809347
YP_005170538.1	CDS	BCGMEX_1072c	NC_016804.1	1165856	1166263	R	Differs from Rv1042c by 1aa, E129G in Mycobacterium bovis and BCG Pasteur. Differs from Mb1070c by G129E in Mycobacterium tuberculosis and Mycobacterium bovis BCG Tokyo and BCG Mexico; putative IS like-2 transposase	complement(1165856..1166263)	Mycobacterium bovis BCG str. Mexico	11809349
YP_005170539.1	CDS	BCGMEX_1073c	NC_016804.1	1166546	1167571	R	Differs from Rv1043c by 1aa, T99A, and from Mb1072c by 1aa, G263C in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1166546..1167571)	Mycobacterium bovis BCG str. Mexico	11809350
YP_005170540.1	CDS	BCGMEX_1074	NC_016804.1	1167818	1168441	D	hypothetical protein	1167818..1168441	Mycobacterium bovis BCG str. Mexico	11809351
YP_005170541.1	CDS	BCGMEX_1075	NC_016804.1	1168438	1169319	D	Differs from Mb1074 by 1aa, W104G in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico.; hypothetical protein	1168438..1169319	Mycobacterium bovis BCG str. Mexico	11809352
YP_005170542.1	CDS	BCGMEX_1076c	NC_016804.1	1169401	1169994	R	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a 1bp insertion, compared to Mycobacterium tuberculosis strains H37Rv, leads to different C-terminus; hypothetical protein	complement(1169401..1169994)	Mycobacterium bovis BCG str. Mexico	11809353
YP_005170543.1	CDS	BCGMEX_1077	NC_016804.1	1170189	1171436	D	putative IS1081 transposase	1170189..1171436	Mycobacterium bovis BCG str. Mexico	11809354
YP_005170544.1	CDS	BCGMEX_1078c	NC_016804.1	1171804	1172919	R	Differs from Rv1048c and Mb1077c by 2aa, A37D, T173A in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1171804..1172919)	Mycobacterium bovis BCG str. Mexico	11809355
YP_005170545.1	CDS	BCGMEX_1079	NC_016804.1	1173152	1173598	D	putative transcriptional repressor protein	1173152..1173598	Mycobacterium bovis BCG str. Mexico	11809356
YP_005170546.1	CDS	BCGMEX_1080	NC_016804.1	1173646	1174551	D	putative oxidoreductase	1173646..1174551	Mycobacterium bovis BCG str. Mexico	11809357
YP_005170547.1	CDS	BCGMEX_1081c	NC_016804.1	1174710	1175465	R	hypothetical protein	complement(1174710..1175465)	Mycobacterium bovis BCG str. Mexico	11809358
YP_005170548.1	CDS	BCGMEX_1082	NC_016804.1	1176488	1176877	D	hypothetical protein	1176488..1176877	Mycobacterium bovis BCG str. Mexico	11809359
YP_005170549.1	CDS	BCGMEX_1083c	NC_016804.1	1176776	1177051	R	hypothetical protein	complement(1176776..1177051)	Mycobacterium bovis BCG str. Mexico	11809360
YP_005170550.1	CDS	BCGMEX_1084	NC_016804.1	1177693	1178007	D	putative integrase	1177693..1178007	Mycobacterium bovis BCG str. Mexico	11809361
YP_005170551.1	CDS	BCGMEX_1085	NC_016804.1	1178004	1178138	D	putative integrase	1178004..1178138	Mycobacterium bovis BCG str. Mexico	11809362
YP_005170552.1	CDS	BCGMEX_1086	NC_016804.1	1178399	1179157	D	hypothetical protein	1178399..1179157	Mycobacterium bovis BCG str. Mexico	11809364
YP_005170553.1	CDS	BCGMEX_1087	NC_016804.1	1180161	1181342	D	hypothetical protein	1180161..1181342	Mycobacterium bovis BCG str. Mexico	11809365
YP_005170554.1	CDS	fadD14	NC_016804.1	1181449	1183080	D	acyl-CoA synthetase	1181449..1183080	Mycobacterium bovis BCG str. Mexico	11809366
YP_005170555.1	CDS	BCGMEX_1089	NC_016804.1	1183156	1184220	D	hypothetical protein	1183156..1184220	Mycobacterium bovis BCG str. Mexico	11809367
YP_005170556.1	CDS	BCGMEX_1090	NC_016804.1	1184273	1184746	D	hypothetical protein	1184273..1184746	Mycobacterium bovis BCG str. Mexico	11809368
YP_005170557.1	CDS	BCGMEX_1091	NC_016804.1	1184780	1185643	D	hypothetical protein	1184780..1185643	Mycobacterium bovis BCG str. Mexico	11809369
YP_005170558.1	CDS	BCGMEX_1092	NC_016804.1	1185648	1186505	D	hypothetical protein	1185648..1186505	Mycobacterium bovis BCG str. Mexico	11809370
YP_005170559.1	CDS	BCGMEX_1093c	NC_016804.1	1186506	1187588	R	hypothetical protein	complement(1186506..1187588)	Mycobacterium bovis BCG str. Mexico	11809371
YP_005170560.1	CDS	lpqV	NC_016804.1	1187669	1188088	R	putative lipoprotein	complement(1187669..1188088)	Mycobacterium bovis BCG str. Mexico	11809372
YP_005170561.1	CDS	BCGMEX_1095	NC_016804.1	1188200	1188766	D	hypothetical protein	1188200..1188766	Mycobacterium bovis BCG str. Mexico	11809373
YP_005170562.1	CDS	BCGMEX_1096	NC_016804.1	1188763	1189158	D	hypothetical protein	1188763..1189158	Mycobacterium bovis BCG str. Mexico	11809374
YP_005170563.1	CDS	PE_PGRS19	NC_016804.1	1189186	1191201	R	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo, and BCG Mexico, 2 deletions each of 3 bp and a 18 bp insertion leads to a longer product compared to their homolog in Mycobacterium tuberculosis strain H37Rv (671 aa versus 667 aa); PE-PGRS family protein	complement(1189186..1191201)	Mycobacterium bovis BCG str. Mexico	11809375
YP_005170564.1	CDS	BCGMEX_1098c	NC_016804.1	1191534	1193726	R	In Mycobacterium bovis, insertions of 717 bp and 192 bp, and a 9 bp deletion, leads to a longer product compared to the homolog in Mycobacterium tuberculosis strain H37Rv (763 aa versus 463 aa). In Mycobacterium bovis BCG Pasteur a deletion of 99 bp leads to a smaller product compared to the homolog in Mycobacterium bovis (730 aa versus 763 aa); PE-PGRS family protein	complement(1191534..1193726)	Mycobacterium bovis BCG str. Mexico	11809376
YP_005170565.1	CDS	BCGMEX_1099c	NC_016804.1	1194088	1195851	R	Differs from Rv1069c and from Mb1098c by 1aa L481P in BCG Pasteur, BCG Tokyo and BCG Mexico.; hypothetical protein	complement(1194088..1195851)	Mycobacterium bovis BCG str. Mexico	11809377
YP_005170566.1	CDS	echA8	NC_016804.1	1195848	1196621	R	Enoyl-CoA hydratase	complement(1195848..1196621)	Mycobacterium bovis BCG str. Mexico	11809378
YP_005170567.1	CDS	echA9	NC_016804.1	1196633	1197670	R	Enoyl-CoA hydratase	complement(1196633..1197670)	Mycobacterium bovis BCG str. Mexico	11809379
YP_005170568.1	CDS	BCGMEX_1102	NC_016804.1	1197857	1198693	D	transmembrane protein	1197857..1198693	Mycobacterium bovis BCG str. Mexico	11809380
YP_005170569.1	CDS	BCGMEX_1103	NC_016804.1	1198809	1199660	D	hypothetical protein	1198809..1199660	Mycobacterium bovis BCG str. Mexico	11809381
YP_005170570.1	CDS	fadA3	NC_016804.1	1199734	1200951	R	acetyl-CoA acetyltransferase	complement(1199734..1200951)	Mycobacterium bovis BCG str. Mexico	11809382
YP_005170571.1	CDS	BCGMEX_1105c	NC_016804.1	1201004	1201948	R	hypothetical protein	complement(1201004..1201948)	Mycobacterium bovis BCG str. Mexico	11809383
YP_005170572.1	CDS	lipU	NC_016804.1	1202345	1203238	D	putative lipase	1202345..1203238	Mycobacterium bovis BCG str. Mexico	11809384
YP_005170573.1	CDS	cbs	NC_016804.1	1203295	1204689	D	putative cystathionine beta-synthase	1203295..1204689	Mycobacterium bovis BCG str. Mexico	11809385
YP_005170574.1	CDS	pra	NC_016804.1	1204891	1205613	D	Differs from Rv1078 by 1aa T171I in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1204891..1205613	Mycobacterium bovis BCG str. Mexico	11809386
YP_005170575.1	CDS	metB	NC_016804.1	1205645	1206811	D	cystathionine gamma-synthase	1205645..1206811	Mycobacterium bovis BCG str. Mexico	11809387
YP_005170576.1	CDS	greA	NC_016804.1	1206882	1207376	R	putative transcription elongation factor	complement(1206882..1207376)	Mycobacterium bovis BCG str. Mexico	11809388
YP_005170577.1	CDS	BCGMEX_1111c	NC_016804.1	1207562	1207996	R	hypothetical protein	complement(1207562..1207996)	Mycobacterium bovis BCG str. Mexico	11809389
YP_005170578.1	CDS	mca	NC_016804.1	1208098	1208964	D	Mycothiol S-conjugate amidase	1208098..1208964	Mycobacterium bovis BCG str. Mexico	11809390
YP_005170579.1	CDS	BCGMEX_1113	NC_016804.1	1208961	1209227	D	hypothetical protein	1208961..1209227	Mycobacterium bovis BCG str. Mexico	11809391
YP_005170580.1	CDS	BCGMEX_1114	NC_016804.1	1209214	1211235	D	hypothetical protein	1209214..1211235	Mycobacterium bovis BCG str. Mexico	11809392
YP_005170581.1	CDS	BCGMEX_1115c	NC_016804.1	1211334	1212062	R	putative hemolysin-like protein	complement(1211334..1212062)	Mycobacterium bovis BCG str. Mexico	11809393
YP_005170582.1	CDS	BCGMEX_1116	NC_016804.1	1212173	1212961	D	Short (C15) chain Z-isoprenyl diphosphate synthase	1212173..1212961	Mycobacterium bovis BCG str. Mexico	11809394
YP_005170583.1	CDS	PE_PGRS21	NC_016804.1	1213138	1215567	D	In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, insertions of 144 bp and 3 bp, and deletion of 42 bp, lead to a longer product compared to the homolog in Mycobacterium bovis (809 aa versus 774 aa). In Mycobacterium bovis, insertions of 3 bp and 45 bp, and deletions of 18 bp and 9 bp, lead to a longer product compared to the homolog in Mycobacterium tuberculosis strain H37Rv (774 aa versus 767 aa); PE-PGRS family protein	1213138..1215567	Mycobacterium bovis BCG str. Mexico	11809395
YP_005170584.1	CDS	BCGMEX_1118	NC_016804.1	1215744	1216064	D	hypothetical protein	1215744..1216064	Mycobacterium bovis BCG str. Mexico	11809396
YP_005170585.1	CDS	PE9	NC_016804.1	1216217	1216651	D	PE family protein	1216217..1216651	Mycobacterium bovis BCG str. Mexico	11809397
YP_005170586.1	CDS	PE10	NC_016804.1	1216530	1216835	D	Differs from Rv1089 and Mb1118 by 1 aa N84T in BCG Pasteur, BCG Tokyo and BCG Mexico; PE family protein	1216530..1216835	Mycobacterium bovis BCG str. Mexico	11809398
YP_005170587.1	CDS	celA2a	NC_016804.1	1217221	1217325	D	putative cellulase	1217221..1217325	Mycobacterium bovis BCG str. Mexico	11809399
YP_005170588.1	CDS	celA2b	NC_016804.1	1217303	1217758	D	putative cellulase	1217303..1217758	Mycobacterium bovis BCG str. Mexico	11809400
YP_005170589.1	CDS	PE_PGRS22	NC_016804.1	1218173	1220725	D	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 9 bp deletion leads to a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (850 aa versus 853 aa); PE PGRS family protein	1218173..1220725	Mycobacterium bovis BCG str. Mexico	11809401
YP_005170590.1	CDS	coaA	NC_016804.1	1220943	1221881	R	Pantothenate kinase	complement(1220943..1221881)	Mycobacterium bovis BCG str. Mexico	11809402
YP_005170591.1	CDS	glyA	NC_016804.1	1222269	1223549	D	Differs from Rv1093 by 1aa, A36V in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; Serine hydroxymethyltransferase	1222269..1223549	Mycobacterium bovis BCG str. Mexico	11809403
YP_005170592.1	CDS	desA2	NC_016804.1	1223654	1224481	D	putative acyl-[acyl-carrier protein] desaturase	1223654..1224481	Mycobacterium bovis BCG str. Mexico	11809404
YP_005170593.1	CDS	phoH2	NC_016804.1	1224692	1225993	D	putative phoH-like protein	1224692..1225993	Mycobacterium bovis BCG str. Mexico	11809405
YP_005170594.1	CDS	BCGMEX_1128	NC_016804.1	1226080	1226955	D	Differs from Rv1096 by 1aa, S272P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative glycosyl hydrolase	1226080..1226955	Mycobacterium bovis BCG str. Mexico	11809406
YP_005170595.1	CDS	BCGMEX_1129c	NC_016804.1	1226958	1227839	R	Differs from Rv1097c by 1aa, L23P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative membrane glycine and proline rich protein	complement(1226958..1227839)	Mycobacterium bovis BCG str. Mexico	11809407
YP_005170596.1	CDS	fumC	NC_016804.1	1227836	1229260	R	Fumarate hydratase	complement(1227836..1229260)	Mycobacterium bovis BCG str. Mexico	11809408
YP_005170597.1	CDS	glpX	NC_016804.1	1229291	1230277	R	Fructose-1,6-bisphosphatase II	complement(1229291..1230277)	Mycobacterium bovis BCG str. Mexico	11809409
YP_005170598.1	CDS	BCGMEX_1132	NC_016804.1	1230378	1231079	D	Differs from Rv1100 and Mb1130 by 1aa, P21T in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1230378..1231079	Mycobacterium bovis BCG str. Mexico	11809410
YP_005170599.1	CDS	BCGMEX_1133c	NC_016804.1	1231086	1232114	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium bovis, a frameshift due to a single base deletion leads to a shorter product with a different amino part compared to its homolog in Mycobacterium tuberculosis strain H37Rv. Differs from Mb1131c by 1 aa, E315D in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1231086..1232114)	Mycobacterium bovis BCG str. Mexico	11809411
YP_005170600.1	CDS	BCGMEX_1134c	NC_016804.1	1232354	1232665	R	Differs from Rv1102c by 1aa, I65T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1232354..1232665)	Mycobacterium bovis BCG str. Mexico	11809412
YP_005170601.1	CDS	BCGMEX_1135c	NC_016804.1	1232665	1232985	R	hypothetical protein	complement(1232665..1232985)	Mycobacterium bovis BCG str. Mexico	11809413
YP_005170602.1	CDS	BCGMEX_1136	NC_016804.1	1232995	1233684	D	putative para-nitrobenzyl esterase	1232995..1233684	Mycobacterium bovis BCG str. Mexico	11809414
YP_005170603.1	CDS	BCGMEX_1137	NC_016804.1	1234005	1234520	D	putative para-nitrobenzyl esterase	1234005..1234520	Mycobacterium bovis BCG str. Mexico	11809415
YP_005170604.1	CDS	BCGMEX_1138c	NC_016804.1	1234538	1235638	R	putative cholesterol dehydrogenase	complement(1234538..1235638)	Mycobacterium bovis BCG str. Mexico	11809416
YP_005170605.1	CDS	xseB	NC_016804.1	1235660	1235917	R	Exodeoxyribonuclease VII small subunit	complement(1235660..1235917)	Mycobacterium bovis BCG str. Mexico	11809417
YP_005170606.1	CDS	xseA	NC_016804.1	1235907	1237154	R	Exodeoxyribonuclease VII large subunit	complement(1235907..1237154)	Mycobacterium bovis BCG str. Mexico	11809418
YP_005170607.1	CDS	BCGMEX_1141c	NC_016804.1	1237151	1237789	R	Differs from Rv1109c and Mb1139c by 1aa, T147A in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1237151..1237789)	Mycobacterium bovis BCG str. Mexico	11809419
YP_005170608.1	CDS	lytB	NC_016804.1	1237879	1238886	D	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	1237879..1238886	Mycobacterium bovis BCG str. Mexico	11809420
YP_005170609.1	CDS	BCGMEX_1143c	NC_016804.1	1238903	1239886	R	hypothetical protein	complement(1238903..1239886)	Mycobacterium bovis BCG str. Mexico	11809421
YP_005170610.1	CDS	ychF	NC_016804.1	1239949	1241022	D	Differs from Rv1112 by 1aa, I77V in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; Translation-associated GTPase	1239949..1241022	Mycobacterium bovis BCG str. Mexico	11809422
YP_005170611.1	CDS	BCGMEX_1145	NC_016804.1	1241110	1241307	D	hypothetical protein	1241110..1241307	Mycobacterium bovis BCG str. Mexico	11809423
YP_005170612.1	CDS	BCGMEX_1146	NC_016804.1	1241304	1241678	D	hypothetical protein	1241304..1241678	Mycobacterium bovis BCG str. Mexico	11809424
YP_005170613.1	CDS	BCGMEX_1147	NC_016804.1	1241881	1242579	D	Differs from Rv1115 by 1aa, P19S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1241881..1242579	Mycobacterium bovis BCG str. Mexico	11809425
YP_005170614.1	CDS	BCGMEX_1148	NC_016804.1	1242697	1242882	D	hypothetical protein	1242697..1242882	Mycobacterium bovis BCG str. Mexico	11809426
YP_005170615.1	CDS	BCGMEX_1149c	NC_016804.1	1242809	1243084	R	hypothetical protein	complement(1242809..1243084)	Mycobacterium bovis BCG str. Mexico	11809427
YP_005170616.1	CDS	BCGMEX_1150	NC_016804.1	1243327	1243650	D	hypothetical protein	1243327..1243650	Mycobacterium bovis BCG str. Mexico	11809428
YP_005170617.1	CDS	BCGMEX_1151c	NC_016804.1	1243665	1244525	R	hypothetical protein	complement(1243665..1244525)	Mycobacterium bovis BCG str. Mexico	11809429
YP_005170618.1	CDS	BCGMEX_1152c	NC_016804.1	1244558	1244707	R	hypothetical protein	complement(1244558..1244707)	Mycobacterium bovis BCG str. Mexico	11809430
YP_005170619.1	CDS	BCGMEX_1153c	NC_016804.1	1244704	1245198	R	Differs from Mb1151c by 1aa, G53A in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1244704..1245198)	Mycobacterium bovis BCG str. Mexico	11809431
YP_005170620.1	CDS	zwf1	NC_016804.1	1245401	1246801	D	glucose-6-phosphate 1-dehydrogenase	1245401..1246801	Mycobacterium bovis BCG str. Mexico	11809432
YP_005170621.1	CDS	gnd2	NC_016804.1	1246823	1247845	D	6-phosphogluconate dehydrogenase like protein	1246823..1247845	Mycobacterium bovis BCG str. Mexico	11809433
YP_005170622.1	CDS	bpoB	NC_016804.1	1247838	1248746	R	putative peroxidase	complement(1247838..1248746)	Mycobacterium bovis BCG str. Mexico	11809434
YP_005170623.1	CDS	ephC	NC_016804.1	1248821	1249771	D	putative epoxide hydrolase	1248821..1249771	Mycobacterium bovis BCG str. Mexico	11809435
YP_005170624.1	CDS	BCGMEX_1158	NC_016804.1	1249776	1251020	D	Differs from Rv1125 by 1aa, G101S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1249776..1251020	Mycobacterium bovis BCG str. Mexico	11809436
YP_005170625.1	CDS	BCGMEX_1159c	NC_016804.1	1251024	1251629	R	hypothetical protein	complement(1251024..1251629)	Mycobacterium bovis BCG str. Mexico	11809437
YP_005170626.1	CDS	ppdK	NC_016804.1	1251626	1253098	R	Differs from Rv1127c by 2aa, E69G, P350T; putative pyruvate, phosphate dikinase	complement(1251626..1253098)	Mycobacterium bovis BCG str. Mexico	11809438
YP_005170627.1	CDS	BCGMEX_1161c	NC_016804.1	1253311	1254666	R	Differs from Rv1128c by 1aa, G270E in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1253311..1254666)	Mycobacterium bovis BCG str. Mexico	11809439
YP_005170628.1	CDS	BCGMEX_1162c	NC_016804.1	1254768	1256228	R	putative transcriptional regulator protein	complement(1254768..1256228)	Mycobacterium bovis BCG str. Mexico	11809440
YP_005170629.1	CDS	BCGMEX_1163	NC_016804.1	1256249	1257829	D	Differs from Rv1130 by 2aa, G3D, L10F in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1256249..1257829	Mycobacterium bovis BCG str. Mexico	11809441
YP_005170630.1	CDS	gltA1	NC_016804.1	1257826	1259007	D	methylcitrate synthase	1257826..1259007	Mycobacterium bovis BCG str. Mexico	11809442
YP_005170631.1	CDS	BCGMEX_1165	NC_016804.1	1259019	1260749	D	Differs from Mb1163 by 1aa, T176M in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1259019..1260749	Mycobacterium bovis BCG str. Mexico	11809443
YP_005170632.1	CDS	metE	NC_016804.1	1260761	1263040	R	putative 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase	complement(1260761..1263040)	Mycobacterium bovis BCG str. Mexico	11809444
YP_005170633.1	CDS	BCGMEX_1167	NC_016804.1	1263616	1263852	D	hypothetical protein	1263616..1263852	Mycobacterium bovis BCG str. Mexico	11809445
YP_005170634.1	CDS	PPE16	NC_016804.1	1263966	1265822	R	PPE family protein	complement(1263966..1265822)	Mycobacterium bovis BCG str. Mexico	11809446
YP_005170635.1	CDS	BCGMEX_1169	NC_016804.1	1266008	1266250	D	putative acetyl-CoA acetyltransferase	1266008..1266250	Mycobacterium bovis BCG str. Mexico	11809447
YP_005170636.1	CDS	BCGMEX_1170	NC_016804.1	1266300	1266641	D	putative enoyl-CoA hydratase	1266300..1266641	Mycobacterium bovis BCG str. Mexico	11809448
YP_005170637.1	CDS	BCGMEX_1171c	NC_016804.1	1266781	1267149	R	hypothetical protein	complement(1266781..1267149)	Mycobacterium bovis BCG str. Mexico	11809449
YP_005170638.1	CDS	BCGMEX_1172c	NC_016804.1	1267166	1268182	R	putative oxidoreductase	complement(1267166..1268182)	Mycobacterium bovis BCG str. Mexico	11809450
YP_005170639.1	CDS	BCGMEX_1173c	NC_016804.1	1268179	1268679	R	hypothetical protein	complement(1268179..1268679)	Mycobacterium bovis BCG str. Mexico	11809451
YP_005170640.1	CDS	BCGMEX_1174	NC_016804.1	1269041	1269889	D	putative integral membrane protein	1269041..1269889	Mycobacterium bovis BCG str. Mexico	11809452
YP_005170641.1	CDS	echA11	NC_016804.1	1269897	1270703	R	Enoyl-CoA hydratase	complement(1269897..1270703)	Mycobacterium bovis BCG str. Mexico	11809453
YP_005170642.1	CDS	echA10	NC_016804.1	1270846	1271652	R	Enoyl-CoA hydratase	complement(1270846..1271652)	Mycobacterium bovis BCG str. Mexico	11809454
YP_005170643.1	CDS	mcr	NC_016804.1	1271756	1272838	D	putative alpha-methylacyl-CoA racemase	1271756..1272838	Mycobacterium bovis BCG str. Mexico	11809455
YP_005170644.1	CDS	BCGMEX_1178	NC_016804.1	1272850	1273602	D	putative short-chain type dehydrogenase/reductase	1272850..1273602	Mycobacterium bovis BCG str. Mexico	11809456
YP_005170645.1	CDS	mmpL13	NC_016804.1	1274117	1276462	D	In Mycobacterium tuberculosis strain H37Rv, Rv1145 and Rv1146 exist as 2 genes. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG MExico, and Mycobacterium bovis, a single base insertion at H37Rv position 1273250-1273251 leads to a single product; transmembrane transport protein	1274117..1276462	Mycobacterium bovis BCG str. Mexico	11809457
YP_005170646.1	CDS	BCGMEX_1180	NC_016804.1	1276595	1277245	D	hypothetical protein	1276595..1277245	Mycobacterium bovis BCG str. Mexico	11809458
YP_005170647.1	CDS	BCGMEX_1181c	NC_016804.1	1277995	1279443	R	Differs from Rv1148c and Mb1179c by 1aa, N354H in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1277995..1279443)	Mycobacterium bovis BCG str. Mexico	11809459
YP_005170648.1	CDS	BCGMEX_1182	NC_016804.1	1279588	1279995	D	putative transposase	1279588..1279995	Mycobacterium bovis BCG str. Mexico	11809460
YP_005170649.1	CDS	BCGMEX_1184c	NC_016804.1	1280599	1281312	R	NAD-dependent deacetylase	complement(1280599..1281312)	Mycobacterium bovis BCG str. Mexico	11809462
YP_005170650.1	CDS	BCGMEX_1185	NC_016804.1	1281350	1281715	D	putative transcriptional regulatory protein	1281350..1281715	Mycobacterium bovis BCG str. Mexico	11809463
YP_005170651.1	CDS	omt	NC_016804.1	1281693	1282541	R	Differs from Rv1153c by 2aa, T36A, G53D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico.; putative O-methyltransferase	complement(1281693..1282541)	Mycobacterium bovis BCG str. Mexico	11809464
YP_005170652.1	CDS	BCGMEX_1187c	NC_016804.1	1282538	1283179	R	Differs from Rv1154c by 1aa, A123T in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1282538..1283179)	Mycobacterium bovis BCG str. Mexico	11809465
YP_005170653.1	CDS	BCGMEX_1188	NC_016804.1	1283124	1283567	D	Differs from Rv1155 by 1aa, P115S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1283124..1283567	Mycobacterium bovis BCG str. Mexico	11809466
YP_005170654.1	CDS	BCGMEX_1189	NC_016804.1	1284001	1284588	D	hypothetical protein	1284001..1284588	Mycobacterium bovis BCG str. Mexico	11809467
YP_005170655.1	CDS	BCGMEX_1190c	NC_016804.1	1284751	1285794	R	Is 24 codons shorter than Rv1157c and Mb1188c due to 72bp deletion, after codon 214; hypothetical protein	complement(1284751..1285794)	Mycobacterium bovis BCG str. Mexico	11809468
YP_005170656.1	CDS	BCGMEX_1191c	NC_016804.1	1285802	1286485	R	hypothetical protein	complement(1285802..1286485)	Mycobacterium bovis BCG str. Mexico	11809469
YP_005170657.1	CDS	pimE	NC_016804.1	1286615	1287910	D	Mannosyltransferase	1286615..1287910	Mycobacterium bovis BCG str. Mexico	11809470
YP_005170658.1	CDS	phhB	NC_016804.1	1287907	1288191	R	Pterin-4-alpha-carbinolamine dehydratase	complement(1287907..1288191)	Mycobacterium bovis BCG str. Mexico	11809471
YP_005170659.1	CDS	mutT2	NC_016804.1	1288218	1288643	D	putative mutator protein	1288218..1288643	Mycobacterium bovis BCG str. Mexico	11809472
YP_005170660.1	CDS	narG	NC_016804.1	1288951	1292649	D	Differs from Rv1161 by 2aa, L458V, G821D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative respiratory nitrate reductase alpha chain	1288951..1292649	Mycobacterium bovis BCG str. Mexico	11809473
YP_005170661.1	CDS	narH	NC_016804.1	1292688	1294364	D	putative respiratory nitrate reductase beta chain	1292688..1294364	Mycobacterium bovis BCG str. Mexico	11809474
YP_005170662.1	CDS	narJ	NC_016804.1	1294421	1295026	D	Differs from Rv1163 and Mb1195 by 1aa, L106P in Mycobacterium bovis BCG Pasteur; putative respiratory nitrate reductase delta chain	1294421..1295026	Mycobacterium bovis BCG str. Mexico	11809475
YP_005170663.1	CDS	narI	NC_016804.1	1295029	1295769	D	Differs from Rv1164 by 1aa, V200A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative respiratory nitrate reductase gamma chain	1295029..1295769	Mycobacterium bovis BCG str. Mexico	11809476
YP_005170664.1	CDS	typA	NC_016804.1	1295791	1297677	D	Differs from Rv1165, Mb1197 by 1aa L98V in Mycobacterium bovis BCG Tokyo.; putative GTP-binding translation elongation factor	1295791..1297677	Mycobacterium bovis BCG str. Mexico	11809477
YP_005170665.1	CDS	lpqW	NC_016804.1	1297775	1299682	D	putative lipoprotein	1297775..1299682	Mycobacterium bovis BCG str. Mexico	11809478
YP_005170666.1	CDS	BCGMEX_1201c	NC_016804.1	1299710	1300315	R	putative transcriptional regulatory protein	complement(1299710..1300315)	Mycobacterium bovis BCG str. Mexico	11809479
YP_005170667.1	CDS	PPE17a	NC_016804.1	1300886	1301428	R	In Mycobacterium tuberculosis strain H37Rv, PPE17 exists as a single gene. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium bovis, a frameshift due to a single base insertion splits PPE17 into 2 parts, PPE17a and PPE17b; PPE family protein	complement(1300886..1301428)	Mycobacterium bovis BCG str. Mexico	11809481
YP_005170668.1	CDS	PE11	NC_016804.1	1301446	1301748	R	PE family protein	complement(1301446..1301748)	Mycobacterium bovis BCG str. Mexico	11809482
YP_005170669.1	CDS	mshB	NC_016804.1	1301928	1302839	D	N-acetyl-1-D-myo-inosityl-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase	1301928..1302839	Mycobacterium bovis BCG str. Mexico	11809483
YP_005170670.1	CDS	BCGMEX_1206	NC_016804.1	1302931	1303371	D	hypothetical protein	1302931..1303371	Mycobacterium bovis BCG str. Mexico	11809484
YP_005170671.1	CDS	PE12	NC_016804.1	1303379	1304305	R	Differs from Rv1172c by 1aa, H133Q in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; PE family protein	complement(1303379..1304305)	Mycobacterium bovis BCG str. Mexico	11809485
YP_005170672.1	CDS	fbiC	NC_016804.1	1304555	1307125	D	FO synthase	1304555..1307125	Mycobacterium bovis BCG str. Mexico	11809486
YP_005170673.1	CDS	BCGMEX_1209c	NC_016804.1	1307231	1307563	R	hypothetical protein	complement(1307231..1307563)	Mycobacterium bovis BCG str. Mexico	11809487
YP_005170674.1	CDS	fadH	NC_016804.1	1307764	1309788	R	Differs from Rv1175c by 3aa, N90T, S210T, S649I in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative NADPH dependent 2,4-dienoyl-CoA reductase	complement(1307764..1309788)	Mycobacterium bovis BCG str. Mexico	11809488
YP_005170675.1	CDS	BCGMEX_1211c	NC_016804.1	1309785	1310354	R	hypothetical protein	complement(1309785..1310354)	Mycobacterium bovis BCG str. Mexico	11809489
YP_005170676.1	CDS	fdxC	NC_016804.1	1310567	1310893	D	putative ferredoxin	1310567..1310893	Mycobacterium bovis BCG str. Mexico	11809490
YP_005170677.1	CDS	BCGMEX_1213	NC_016804.1	1310926	1312014	D	N-succinyl-L,L-diaminopimelate aminotransferase	1310926..1312014	Mycobacterium bovis BCG str. Mexico	11809491
YP_005170678.1	CDS	BCGMEX_1214c	NC_016804.1	1312042	1314861	R	hypothetical protein	complement(1312042..1314861)	Mycobacterium bovis BCG str. Mexico	11809492
YP_005170679.1	CDS	pks3	NC_016804.1	1315288	1321545	D	In Mycobacterium tuberculosis strain H37Rv, Rv1180 and Rv1181 exist as 2 genes. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium bovis, a single base transversion leads to a single product (similar to other organisms). Differs from Rv1181 by 2aa, A1068D, P1423A in BCG Pasteur, BCG Tokyo and BCG Mexico; putative polyketide beta-ketoacyl synthase	1315288..1321545	Mycobacterium bovis BCG str. Mexico	11809493
YP_005170680.1	CDS	papA3	NC_016804.1	1321598	1323016	D	putative polyketide synthase associated protein	1321598..1323016	Mycobacterium bovis BCG str. Mexico	11809494
YP_005170681.1	CDS	mmpL10	NC_016804.1	1323083	1326091	D	putative transmembrane protein	1323083..1326091	Mycobacterium bovis BCG str. Mexico	11809495
YP_005170682.1	CDS	BCGMEX_1218c	NC_016804.1	1326095	1327174	R	hypothetical protein	complement(1326095..1327174)	Mycobacterium bovis BCG str. Mexico	11809496
YP_005170683.1	CDS	fadD21	NC_016804.1	1327339	1329075	R	acyl-CoA synthetase	complement(1327339..1329075)	Mycobacterium bovis BCG str. Mexico	11809497
YP_005170684.1	CDS	BCGMEX_1220c	NC_016804.1	1329252	1330868	R	Differs from Rv1186c by 1aa, A207P in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1329252..1330868)	Mycobacterium bovis BCG str. Mexico	11809498
YP_005170685.1	CDS	rocA	NC_016804.1	1330953	1332584	D	putative pyrroline-5-carboxylate dehydrogenase	1330953..1332584	Mycobacterium bovis BCG str. Mexico	11809499
YP_005170686.1	CDS	BCGMEX_1222	NC_016804.1	1332584	1333573	D	putative proline dehydrogenase	1332584..1333573	Mycobacterium bovis BCG str. Mexico	11809500
YP_005170687.1	CDS	sigI	NC_016804.1	1333655	1334860	D	In Mycobacterium tuberculosis strain H37Rv and Mycobacterium bovis AF2122/97, sigI (290 aa) and Rv1189/Mb1221 (304 aa) exist as two genes. In Mycobacterium bovis BCG Pasteur and BCG Mexico they have been fused in-frame following a 1548bp deletion (N-RD18) compared to H37Rv; RNA polymerase sigma factor	1333655..1334860	Mycobacterium bovis BCG str. Mexico	11809501
YP_005170688.1	CDS	BCGMEX_1224	NC_016804.1	1334942	1335769	D	hypothetical protein	1334942..1335769	Mycobacterium bovis BCG str. Mexico	11809502
YP_005170689.1	CDS	BCGMEX_1225	NC_016804.1	1335809	1337230	D	acyl-CoA synthetase	1335809..1337230	Mycobacterium bovis BCG str. Mexico	11809503
YP_005170690.1	CDS	BCGMEX_1226c	NC_016804.1	1337263	1338528	R	hypothetical protein	complement(1337263..1338528)	Mycobacterium bovis BCG str. Mexico	11809504
YP_005170691.1	CDS	PE13	NC_016804.1	1339004	1339303	D	PE family protein	1339004..1339303	Mycobacterium bovis BCG str. Mexico	11809505
YP_005170692.1	CDS	PPE18	NC_016804.1	1339350	1340522	D	In Mycobacterium bovis, a 14 bp to 11 bp substitution leads to a slightly shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (390 aa versus 391 aa). Differs extensively from orthologs Mb1228 and Rv1196 due to numerous substitutions and transitions. Region from aa 210 - 260 shows most difference; PPE family protein	1339350..1340522	Mycobacterium bovis BCG str. Mexico	11809506
YP_005170693.1	CDS	esxK	NC_016804.1	1340657	1340953	D	Differs from Mb1229 by 1aa, A58T in BCG Pasteur, BCG Tokyo and BCG Mexico; putative EsaT-6 like protein 3	1340657..1340953	Mycobacterium bovis BCG str. Mexico	11809507
YP_005170694.1	CDS	esxL	NC_016804.1	1341004	1341288	D	Differs from Rv1198 by 1aa, D12A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative ESAT-6 like protein 4	1341004..1341288	Mycobacterium bovis BCG str. Mexico	11809508
YP_005170695.1	CDS	BCGMEX_1231c	NC_016804.1	1341356	1342603	R	Differs from Rv1199c and Mb1231c by 1aa, G90D in Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transposase	complement(1341356..1342603)	Mycobacterium bovis BCG str. Mexico	11809509
YP_005170696.1	CDS	BCGMEX_1232	NC_016804.1	1342940	1344217	D	integral membrane transport protein	1342940..1344217	Mycobacterium bovis BCG str. Mexico	11809510
YP_005170697.1	CDS	BCGMEX_1233c	NC_016804.1	1344214	1345167	R	putative transferase	complement(1344214..1345167)	Mycobacterium bovis BCG str. Mexico	11809511
YP_005170698.1	CDS	dapE	NC_016804.1	1345258	1346322	D	dipeptidase	1345258..1346322	Mycobacterium bovis BCG str. Mexico	11809512
YP_005170699.1	CDS	BCGMEX_1235c	NC_016804.1	1346319	1346903	R	hypothetical protein	complement(1346319..1346903)	Mycobacterium bovis BCG str. Mexico	11809513
YP_005170700.1	CDS	BCGMEX_1236c	NC_016804.1	1346934	1348622	R	hypothetical protein	complement(1346934..1348622)	Mycobacterium bovis BCG str. Mexico	11809514
YP_005170701.1	CDS	BCGMEX_1237	NC_016804.1	1348717	1349280	D	hypothetical protein	1348717..1349280	Mycobacterium bovis BCG str. Mexico	11809515
YP_005170702.1	CDS	fadD6	NC_016804.1	1349330	1351123	D	acyl-CoA synthetase	1349330..1351123	Mycobacterium bovis BCG str. Mexico	11809516
YP_005170703.1	CDS	folP2	NC_016804.1	1351189	1352145	D	putative dihydropteroate synthase 2	1351189..1352145	Mycobacterium bovis BCG str. Mexico	11809517
YP_005170704.1	CDS	BCGMEX_1240	NC_016804.1	1352142	1353116	D	hypothetical protein	1352142..1353116	Mycobacterium bovis BCG str. Mexico	11809518
YP_005170705.1	CDS	BCGMEX_1241	NC_016804.1	1353155	1353523	D	hypothetical protein	1353155..1353523	Mycobacterium bovis BCG str. Mexico	11809519
YP_005170706.1	CDS	tagA	NC_016804.1	1353520	1354134	D	putative DNA-3-methyladenine glycosylase I	1353520..1354134	Mycobacterium bovis BCG str. Mexico	11809520
YP_005170707.1	CDS	BCGMEX_1243	NC_016804.1	1354242	1354469	D	hypothetical protein	1354242..1354469	Mycobacterium bovis BCG str. Mexico	11809521
YP_005170708.1	CDS	BCGMEX_1244c	NC_016804.1	1354497	1355660	R	Differs from Rv1212c by 2aa, I105V, W340L and from Mb1244c by 1aa, W340L in BCG Pasteur, BCG Tokyo and BCG Mexico; putative glycosyl transferase	complement(1354497..1355660)	Mycobacterium bovis BCG str. Mexico	11809522
YP_005170709.1	CDS	glgC	NC_016804.1	1355835	1357049	D	glucose-1-phosphate adenylyltransferase	1355835..1357049	Mycobacterium bovis BCG str. Mexico	11809523
YP_005170710.1	CDS	PE14	NC_016804.1	1357292	1357624	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, and Mycobacterium tuberculosis strain H37Rv, PE14 exists as a single gene. In Mycobacterium bovis, a frameshift due to a 5 bp deletion leads to a diffferent COOH terminus; PE family protein	complement(1357292..1357624)	Mycobacterium bovis BCG str. Mexico	11809524
YP_005170711.1	CDS	BCGMEX_1247c	NC_016804.1	1357758	1359443	R	Differs from Rv1215c by 1aa, S169A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1357758..1359443)	Mycobacterium bovis BCG str. Mexico	11809525
YP_005170712.1	CDS	BCGMEX_1248c	NC_016804.1	1359471	1360145	R	putative integral membrane protein	complement(1359471..1360145)	Mycobacterium bovis BCG str. Mexico	11809526
YP_005170713.1	CDS	BCGMEX_1249c	NC_016804.1	1360154	1361800	R	Differs from Mb1249c by 1aa, A143T in BCG Pasteur, BCG Tokyo and BCG Mexico; putative tetronasin-transport integral membrane protein ABC transporter	complement(1360154..1361800)	Mycobacterium bovis BCG str. Mexico	11809527
YP_005170714.1	CDS	BCGMEX_1250c	NC_016804.1	1361797	1362732	R	Differs from Rv1218c by 1aa, R243Q in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative tetronasin-transport ATP-binding protein ABC transporter	complement(1361797..1362732)	Mycobacterium bovis BCG str. Mexico	11809528
YP_005170715.1	CDS	BCGMEX_1251c	NC_016804.1	1362722	1363360	R	Differs from Rv1219c and Mb1251c by 1aa, C113W in BCG Pasteur, BCG Tokyo and BCG Mexico; putative transcriptional regulatory protein	complement(1362722..1363360)	Mycobacterium bovis BCG str. Mexico	11809529
YP_005170716.1	CDS	BCGMEX_1252c	NC_016804.1	1363502	1364149	R	putative methyltransferase	complement(1363502..1364149)	Mycobacterium bovis BCG str. Mexico	11809530
YP_005170717.1	CDS	sigE	NC_016804.1	1364412	1365185	D	RNA polymerase sigma factor	1364412..1365185	Mycobacterium bovis BCG str. Mexico	11809531
YP_005170718.1	CDS	BCGMEX_1254	NC_016804.1	1365343	1365807	D	hypothetical protein	1365343..1365807	Mycobacterium bovis BCG str. Mexico	11809532
YP_005170719.1	CDS	htrA	NC_016804.1	1365876	1367462	D	Differs from Rv1223 by 2aa, L288F, N445S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative serine protease	1365876..1367462	Mycobacterium bovis BCG str. Mexico	11809533
YP_005170720.1	CDS	tatB	NC_016804.1	1367464	1367859	D	Differs from Rv1224 by 1aa, G8W in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; sec-independent translocase	1367464..1367859	Mycobacterium bovis BCG str. Mexico	11809534
YP_005170721.1	CDS	BCGMEX_1257c	NC_016804.1	1367892	1368722	R	hypothetical protein	complement(1367892..1368722)	Mycobacterium bovis BCG str. Mexico	11809535
YP_005170722.1	CDS	BCGMEX_1258c	NC_016804.1	1368833	1370296	R	Differs from Rv1226c by 1aa, A450V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	complement(1368833..1370296)	Mycobacterium bovis BCG str. Mexico	11809536
YP_005170723.1	CDS	BCGMEX_1259c	NC_016804.1	1370293	1370826	R	putative transmembrane protein	complement(1370293..1370826)	Mycobacterium bovis BCG str. Mexico	11809537
YP_005170724.1	CDS	lpqX	NC_016804.1	1370921	1371478	D	putative lipoprotein	1370921..1371478	Mycobacterium bovis BCG str. Mexico	11809538
YP_005170725.1	CDS	mrp	NC_016804.1	1371778	1372950	R	putative MRP-related protein	complement(1371778..1372950)	Mycobacterium bovis BCG str. Mexico	11809539
YP_005170726.1	CDS	BCGMEX_1262c	NC_016804.1	1372963	1374198	R	Differs from Rv1230c by 2aa, G45S, P97S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1372963..1374198)	Mycobacterium bovis BCG str. Mexico	11809540
YP_005170727.1	CDS	BCGMEX_1263c	NC_016804.1	1374323	1374865	R	hypothetical protein	complement(1374323..1374865)	Mycobacterium bovis BCG str. Mexico	11809541
YP_005170728.1	CDS	BCGMEX_1264c	NC_016804.1	1374862	1376169	R	Differs from Rv1232c by 1aa, G149C in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1374862..1376169)	Mycobacterium bovis BCG str. Mexico	11809542
YP_005170729.1	CDS	BCGMEX_1265c	NC_016804.1	1376231	1376827	R	hypothetical protein	complement(1376231..1376827)	Mycobacterium bovis BCG str. Mexico	11809543
YP_005170730.1	CDS	BCGMEX_1266	NC_016804.1	1376977	1377504	D	putative transmembrane protein	1376977..1377504	Mycobacterium bovis BCG str. Mexico	11809544
YP_005170731.1	CDS	lpqY	NC_016804.1	1377525	1378931	D	putative sugar-binding lipoprotein	1377525..1378931	Mycobacterium bovis BCG str. Mexico	11809545
YP_005170732.1	CDS	sugA	NC_016804.1	1378928	1379851	D	putative sugar-transport integral membrane protein ABC transporter	1378928..1379851	Mycobacterium bovis BCG str. Mexico	11809546
YP_005170733.1	CDS	sugB	NC_016804.1	1379856	1380680	D	putative sugar-transport integral membrane protein ABC transporter	1379856..1380680	Mycobacterium bovis BCG str. Mexico	11809547
YP_005170734.1	CDS	sugC	NC_016804.1	1380685	1381866	D	putative sugar-transport ATP-binding protein ABC transporter	1380685..1381866	Mycobacterium bovis BCG str. Mexico	11809548
YP_005170735.1	CDS	corA	NC_016804.1	1381943	1383043	R	putative magnesium and cobalt transport transmembrane protein	complement(1381943..1383043)	Mycobacterium bovis BCG str. Mexico	11809549
YP_005170736.1	CDS	mdh	NC_016804.1	1383214	1384203	D	malate dehydrogenase	1383214..1384203	Mycobacterium bovis BCG str. Mexico	11809550
YP_005170737.1	CDS	BCGMEX_1273	NC_016804.1	1384279	1384539	D	hypothetical protein	1384279..1384539	Mycobacterium bovis BCG str. Mexico	11809551
YP_005170738.1	CDS	BCGMEX_1274	NC_016804.1	1384536	1384967	D	hypothetical protein	1384536..1384967	Mycobacterium bovis BCG str. Mexico	11809552
YP_005170739.1	CDS	PE_PGRS23	NC_016804.1	1384990	1386678	R	PE PGRS family protein	complement(1384990..1386678)	Mycobacterium bovis BCG str. Mexico	11809553
YP_005170740.1	CDS	lpqZ	NC_016804.1	1386858	1387718	D	Differs from Rv1244 by 1aa, K242Q in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative lipoprotein	1386858..1387718	Mycobacterium bovis BCG str. Mexico	11809554
YP_005170741.1	CDS	BCGMEX_1277c	NC_016804.1	1387799	1388629	R	putative short-chain type dehydrogenase/reductase	complement(1387799..1388629)	Mycobacterium bovis BCG str. Mexico	11809555
YP_005170742.1	CDS	BCGMEX_1278c	NC_016804.1	1388686	1388979	R	hypothetical protein	complement(1388686..1388979)	Mycobacterium bovis BCG str. Mexico	11809556
YP_005170743.1	CDS	BCGMEX_1279c	NC_016804.1	1388976	1389245	R	hypothetical protein	complement(1388976..1389245)	Mycobacterium bovis BCG str. Mexico	11809557
YP_005170744.1	CDS	kgd	NC_016804.1	1389358	1393002	R	Differs from Rv1248c by 1aa, M747V in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; alpha-ketoglutarate decarboxylase	complement(1389358..1393002)	Mycobacterium bovis BCG str. Mexico	11809558
YP_005170745.1	CDS	BCGMEX_1281c	NC_016804.1	1393195	1393983	R	Differs from Rv1249c by 1aa, T95A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1393195..1393983)	Mycobacterium bovis BCG str. Mexico	11809559
YP_005170746.1	CDS	BCGMEX_1282	NC_016804.1	1394180	1395919	D	Differs from Rv1250 by 1aa, G278R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative drug-transport integral membrane protein	1394180..1395919	Mycobacterium bovis BCG str. Mexico	11809560
YP_005170747.1	CDS	BCGMEX_1283c	NC_016804.1	1395822	1399241	R	hypothetical protein	complement(1395822..1399241)	Mycobacterium bovis BCG str. Mexico	11809561
YP_005170748.1	CDS	lprE	NC_016804.1	1399297	1399905	R	putative lipoprotein	complement(1399297..1399905)	Mycobacterium bovis BCG str. Mexico	11809562
YP_005170749.1	CDS	deaD	NC_016804.1	1399971	1401662	D	Differs from Rv1253 by 1aa, V143M in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative cold-shock dead-box protein a-like protein	1399971..1401662	Mycobacterium bovis BCG str. Mexico	11809563
YP_005170750.1	CDS	BCGMEX_1286	NC_016804.1	1401659	1402810	D	putative acyltransferase	1401659..1402810	Mycobacterium bovis BCG str. Mexico	11809564
YP_005170751.1	CDS	BCGMEX_1287c	NC_016804.1	1402779	1403078	R	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 3007 bp deletion (RD13) leads to the fusion of Rv1257c and Rv1255c, and the deletion of Rv1256c, compared to Mycobacterium tuberculosis strain H37Rv; hypothetical protein	complement(1402779..1403078)	Mycobacterium bovis BCG str. Mexico	11809565
YP_005170752.1	CDS	BCGMEX_1288c	NC_016804.1	1403075	1404334	R	putative integral membrane transport protein	complement(1403075..1404334)	Mycobacterium bovis BCG str. Mexico	11809566
YP_005170753.1	CDS	BCGMEX_1289	NC_016804.1	1404333	1405232	D	hypothetical protein	1404333..1405232	Mycobacterium bovis BCG str. Mexico	11809567
YP_005170754.1	CDS	BCGMEX_1290	NC_016804.1	1405234	1406058	D	In Mycobacterium tuberculosis strain H37Rv, Rv1260 exists as a single gene. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium bovis, a frameshift due to a single base deletion splits Rv1260 into 2 parts; putative oxidoreductase	1405234..1406058	Mycobacterium bovis BCG str. Mexico	11809568
YP_005170755.1	CDS	BCGMEX_1291	NC_016804.1	1406043	1406351	D	In Mycobacterium tuberculosis strain H37Rv, Rv1260 exists as a single gene. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium bovis, a frameshift due to a single base deletion splits Rv1260 into 2 parts; putative oxidoreductase	1406043..1406351	Mycobacterium bovis BCG str. Mexico	11809569
YP_005170756.1	CDS	BCGMEX_1292c	NC_016804.1	1406477	1406926	R	hypothetical protein	complement(1406477..1406926)	Mycobacterium bovis BCG str. Mexico	11809570
YP_005170757.1	CDS	BCGMEX_1293c	NC_016804.1	1406931	1407365	R	Differs from Rv1262c by 1aa, R104P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative HIT-like protein	complement(1406931..1407365)	Mycobacterium bovis BCG str. Mexico	11809571
YP_005170758.1	CDS	amiB2	NC_016804.1	1407424	1408812	D	amidase	1407424..1408812	Mycobacterium bovis BCG str. Mexico	11809572
YP_005170759.1	CDS	BCGMEX_1295	NC_016804.1	1408887	1410080	D	Differs from Rv1264 by 1aa, C204R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; adenylate cyclase	1408887..1410080	Mycobacterium bovis BCG str. Mexico	11809573
YP_005170760.1	CDS	BCGMEX_1296	NC_016804.1	1410253	1410933	D	hypothetical protein	1410253..1410933	Mycobacterium bovis BCG str. Mexico	11809574
YP_005170761.1	CDS	pknH	NC_016804.1	1410953	1412743	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium bovis, the pknH gene contains several substitutions, transitions and transversions compared to Mycobacterium tuberculosis strain H37Rv. The most significant difference results from a 127 bp to 24 bp substitution that leads to a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (596 aa versus 626 aa). Differs from Mb1297c by 2aa, F374L, I396N in BCG Pasteur and BCG Tokyo; putative transmembrane serine/threonine-protein kinase H	complement(1410953..1412743)	Mycobacterium bovis BCG str. Mexico	11809575
YP_005170762.1	CDS	embR	NC_016804.1	1413084	1414250	R	putative transcriptional regulatory protein	complement(1413084..1414250)	Mycobacterium bovis BCG str. Mexico	11809576
YP_005170763.1	CDS	BCGMEX_1299c	NC_016804.1	1414561	1415259	R	hypothetical protein	complement(1414561..1415259)	Mycobacterium bovis BCG str. Mexico	11809577
YP_005170764.1	CDS	BCGMEX_1300c	NC_016804.1	1415482	1415856	R	hypothetical protein	complement(1415482..1415856)	Mycobacterium bovis BCG str. Mexico	11809578
YP_005170765.1	CDS	lprA	NC_016804.1	1415917	1416651	R	Differs from Mb1301c by 1aa, A134T in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative lipoprotein	complement(1415917..1416651)	Mycobacterium bovis BCG str. Mexico	11809579
YP_005170766.1	CDS	BCGMEX_1302c	NC_016804.1	1416864	1417205	R	hypothetical protein	complement(1416864..1417205)	Mycobacterium bovis BCG str. Mexico	11809580
YP_005170767.1	CDS	BCGMEX_1303c	NC_016804.1	1417313	1419208	R	putative drugs-transport transmembrane ATP-binding protein ABC transporter	complement(1417313..1419208)	Mycobacterium bovis BCG str. Mexico	11809581
YP_005170768.1	CDS	BCGMEX_1304c	NC_016804.1	1419205	1420953	R	putative drugs-transport transmembrane ATP-binding protein ABC transporter	complement(1419205..1420953)	Mycobacterium bovis BCG str. Mexico	11809582
YP_005170769.1	CDS	lprB	NC_016804.1	1421100	1421657	D	Differs from Rv1274 by 1aa, P168L in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative lipoprotein	1421100..1421657	Mycobacterium bovis BCG str. Mexico	11809583
YP_005170770.1	CDS	lprC	NC_016804.1	1421654	1422196	D	putative lipoprotein	1421654..1422196	Mycobacterium bovis BCG str. Mexico	11809584
YP_005170771.1	CDS	BCGMEX_1307c	NC_016804.1	1422341	1422817	R	Differs from Rv1276c by 1aa, S92T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1422341..1422817)	Mycobacterium bovis BCG str. Mexico	11809585
YP_005170772.1	CDS	BCGMEX_1308	NC_016804.1	1423067	1424320	D	hypothetical protein	1423067..1424320	Mycobacterium bovis BCG str. Mexico	11809586
YP_005170773.1	CDS	BCGMEX_1309	NC_016804.1	1424317	1426944	D	hypothetical protein	1424317..1426944	Mycobacterium bovis BCG str. Mexico	11809587
YP_005170774.1	CDS	BCGMEX_1310	NC_016804.1	1426965	1428551	D	putative dehydrogenase FAD flavoprotein gmc oxidoreductase	1426965..1428551	Mycobacterium bovis BCG str. Mexico	11809588
YP_005170775.1	CDS	oppA	NC_016804.1	1428568	1430343	R	putative periplasmic oligopeptide-binding lipoprotein	complement(1428568..1430343)	Mycobacterium bovis BCG str. Mexico	11809589
YP_005170776.1	CDS	oppD	NC_016804.1	1430336	1432174	R	putative oligopeptide-transport integral membrane protein ABC transporter	complement(1430336..1432174)	Mycobacterium bovis BCG str. Mexico	11809590
YP_005170777.1	CDS	oppC	NC_016804.1	1432171	1433046	R	putative oligopeptide-transport integral membrane protein ABC transporter	complement(1432171..1433046)	Mycobacterium bovis BCG str. Mexico	11809591
YP_005170778.1	CDS	oppB	NC_016804.1	1433043	1434020	R	putative oligopeptide-transport integral membrane protein ABC transporter	complement(1433043..1434020)	Mycobacterium bovis BCG str. Mexico	11809592
YP_005170779.1	CDS	canA	NC_016804.1	1434227	1434718	D	beta-carbonic anhydrase	1434227..1434718	Mycobacterium bovis BCG str. Mexico	11809593
YP_005170780.1	CDS	cysD	NC_016804.1	1434812	1435810	D	putative sulfate adenylyltransferase subunit 2	1434812..1435810	Mycobacterium bovis BCG str. Mexico	11809594
YP_005170781.1	CDS	cysN	NC_016804.1	1435810	1437654	D	Differs from Mb1317 by 1aa, V245L in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Sulfate adenylyltransferase subunit 1 / Adenylylsulfate kinase	1435810..1437654	Mycobacterium bovis BCG str. Mexico	11809595
YP_005170782.1	CDS	BCGMEX_1318	NC_016804.1	1437708	1438193	D	hypothetical protein	1437708..1438193	Mycobacterium bovis BCG str. Mexico	11809596
YP_005170783.1	CDS	BCGMEX_1319	NC_016804.1	1438251	1439468	D	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium bovis, a 153 bp deletion leads to a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (405 aa versus 456 aa); hypothetical protein	1438251..1439468	Mycobacterium bovis BCG str. Mexico	11809597
YP_005170784.1	CDS	BCGMEX_1320	NC_016804.1	1439517	1440149	D	hypothetical protein	1439517..1440149	Mycobacterium bovis BCG str. Mexico	11809598
YP_005170785.1	CDS	BCGMEX_1321c	NC_016804.1	1440288	1441853	R	hypothetical protein	complement(1440288..1441853)	Mycobacterium bovis BCG str. Mexico	11809599
YP_005170786.1	CDS	BCGMEX_1322	NC_016804.1	1441864	1442178	D	hypothetical protein	1441864..1442178	Mycobacterium bovis BCG str. Mexico	11809600
YP_005170787.1	CDS	BCGMEX_1323c	NC_016804.1	1442305	1442640	R	hypothetical protein	complement(1442305..1442640)	Mycobacterium bovis BCG str. Mexico	11809601
YP_005170788.1	CDS	argS	NC_016804.1	1443185	1444837	D	arginyl-tRNA synthetase	1443185..1444837	Mycobacterium bovis BCG str. Mexico	11809603
YP_005170789.1	CDS	lysA	NC_016804.1	1444834	1446177	D	putative diaminopimelate decarboxylase	1444834..1446177	Mycobacterium bovis BCG str. Mexico	11809604
YP_005170790.1	CDS	thrA	NC_016804.1	1446181	1447506	D	homoserine dehydrogenase	1446181..1447506	Mycobacterium bovis BCG str. Mexico	11809605
YP_005170791.1	CDS	thrC	NC_016804.1	1447503	1448585	D	Threonine synthase	1447503..1448585	Mycobacterium bovis BCG str. Mexico	11809606
YP_005170792.1	CDS	thrB	NC_016804.1	1448803	1449753	D	homoserine kinase	1448803..1449753	Mycobacterium bovis BCG str. Mexico	11809607
YP_005170793.1	CDS	rho	NC_016804.1	1450010	1451818	D	Transcription termination factor	1450010..1451818	Mycobacterium bovis BCG str. Mexico	11809608
YP_005170794.1	CDS	rpmE	NC_016804.1	1451969	1452211	D	50S ribosomal protein L31	1451969..1452211	Mycobacterium bovis BCG str. Mexico	11809609
YP_005170795.1	CDS	prfA	NC_016804.1	1452301	1453374	D	peptide chain release factor 1	1452301..1453374	Mycobacterium bovis BCG str. Mexico	11809610
YP_005170796.1	CDS	hemK	NC_016804.1	1453371	1454348	D	Differs from Mb1332 by 1aa, G121A, and from Rv1300by 2aa, G121A, C194R in Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative HemK protein-like protein	1453371..1454348	Mycobacterium bovis BCG str. Mexico	11809611
YP_005170797.1	CDS	BCGMEX_1333	NC_016804.1	1454364	1455017	D	Differs from Rv1301 by 1aa, Q196P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico.; hypothetical protein	1454364..1455017	Mycobacterium bovis BCG str. Mexico	11809612
YP_005170798.1	CDS	rfe	NC_016804.1	1455101	1456315	D	Differs from Rv1302 by 1aa, G357V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico.; putative undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase	1455101..1456315	Mycobacterium bovis BCG str. Mexico	11809613
YP_005170799.1	CDS	BCGMEX_1335	NC_016804.1	1456572	1457057	D	hypothetical protein	1456572..1457057	Mycobacterium bovis BCG str. Mexico	11809614
YP_005170800.1	CDS	atpB	NC_016804.1	1457050	1457802	D	ATP synthase subunit A	1457050..1457802	Mycobacterium bovis BCG str. Mexico	11809615
YP_005170801.1	CDS	atpE	NC_016804.1	1457851	1458096	D	ATP synthase subunit C	1457851..1458096	Mycobacterium bovis BCG str. Mexico	11809616
YP_005170802.1	CDS	atpF	NC_016804.1	1458127	1458642	D	ATP synthase subunit B	1458127..1458642	Mycobacterium bovis BCG str. Mexico	11809617
YP_005170803.1	CDS	atpH	NC_016804.1	1458649	1459989	D	ATP synthase subunit delta	1458649..1459989	Mycobacterium bovis BCG str. Mexico	11809618
YP_005170804.1	CDS	atpA	NC_016804.1	1460034	1461683	D	ATP synthase subunit alpha	1460034..1461683	Mycobacterium bovis BCG str. Mexico	11809619
YP_005170805.1	CDS	atpG	NC_016804.1	1461690	1462607	D	ATP synthase subunit gamma	1461690..1462607	Mycobacterium bovis BCG str. Mexico	11809620
YP_005170806.1	CDS	atpD	NC_016804.1	1462647	1464107	D	ATP synthase subunir beta	1462647..1464107	Mycobacterium bovis BCG str. Mexico	11809621
YP_005170807.1	CDS	atpC	NC_016804.1	1464121	1464486	D	ATP synthase subunit epsilon	1464121..1464486	Mycobacterium bovis BCG str. Mexico	11809622
YP_005170808.1	CDS	BCGMEX_1344	NC_016804.1	1464494	1464928	D	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium bovis, a 2 bp deletion at the 3' end leads to a slightly shorter product compared to Mycobacterium tuberculosis strain H37Rv (144 aa versus 147 aa). Also differs from Rv1312 by 1aa, V3A in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1464494..1464928	Mycobacterium bovis BCG str. Mexico	11809623
YP_005170809.1	CDS	BCGMEX_1345c	NC_016804.1	1464975	1465706	R	In Mycobacterium tuberculosis strain H37Rv, Rv1313c exists as a single gene. In Mycobacterium bovis and Mycobacterium bovis BCG Pasteur and BCG Mexico, a frameshift due to a 12 bp to 1bp substitution splits Rv1313c into 2 parts. Equivalent to Rv1313c (IS1557) in BCG Tokyo.; putative transposase (second part)	complement(1464975..1465706)	Mycobacterium bovis BCG str. Mexico	11809624
YP_005170810.1	CDS	BCGMEX_1346c	NC_016804.1	1465681	1466298	R	In Mycobacterium tuberculosis strain H37Rv, Rv1313c exists as a single gene. In Mycobacterium bovis and Mycobacterium bovis BCG Pasteur and BCG Mexico, a frameshift due to a 12 bp to 1 bp substitution splits Rv1313c into 2 parts; putative transposase (first part)	complement(1465681..1466298)	Mycobacterium bovis BCG str. Mexico	11809625
YP_005170811.1	CDS	BCGMEX_1347c	NC_016804.1	1466464	1467045	R	hypothetical protein	complement(1466464..1467045)	Mycobacterium bovis BCG str. Mexico	11809626
YP_005170812.1	CDS	murA	NC_016804.1	1467114	1468370	D	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	1467114..1468370	Mycobacterium bovis BCG str. Mexico	11809627
YP_005170813.1	CDS	ogt	NC_016804.1	1473927	1474424	R	putative methylated-DNA--protein-cysteine methyltransferase	complement(1473927..1474424)	Mycobacterium bovis BCG str. Mexico	11809631
YP_005170814.1	CDS	alkA	NC_016804.1	1474421	1475911	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium tuberculosis strain H37Rv, alkA exists as a single gene. In Mycobacterium bovis, a single base transition introduces a premature stop codon that splits alkA into 2 parts, alkAa and alkAb; putative ada regulatory protein	complement(1474421..1475911)	Mycobacterium bovis BCG str. Mexico	11809632
YP_005170815.1	CDS	BCGMEX_1351c	NC_016804.1	1475992	1477617	R	putative adenylate cyclase	complement(1475992..1477617)	Mycobacterium bovis BCG str. Mexico	11809633
YP_005170816.1	CDS	BCGMEX_1352c	NC_016804.1	1477687	1479294	R	putative adenylate cyclase	complement(1477687..1479294)	Mycobacterium bovis BCG str. Mexico	11809634
YP_005170817.1	CDS	BCGMEX_1353c	NC_016804.1	1479307	1481010	R	Differs from Rv1320c by 1aa, A531T in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative adenylate cyclase	complement(1479307..1481010)	Mycobacterium bovis BCG str. Mexico	11809635
YP_005170818.1	CDS	BCGMEX_1354	NC_016804.1	1481072	1481752	D	Differs from Rv1321 by 1aa, R144S in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1481072..1481752	Mycobacterium bovis BCG str. Mexico	11809636
YP_005170819.1	CDS	BCGMEX_1355	NC_016804.1	1481775	1482071	D	hypothetical protein	1481775..1482071	Mycobacterium bovis BCG str. Mexico	11809637
YP_005170820.1	CDS	BCGMEX_1356c	NC_016804.1	1482106	1482564	R	hypothetical protein	complement(1482106..1482564)	Mycobacterium bovis BCG str. Mexico	11809638
YP_005170821.1	CDS	fadA4	NC_016804.1	1482655	1483824	D	putative acetyl-CoA acetyltransferase	1482655..1483824	Mycobacterium bovis BCG str. Mexico	11809639
YP_005170822.1	CDS	BCGMEX_1358	NC_016804.1	1483954	1484868	D	putative thioredoxin	1483954..1484868	Mycobacterium bovis BCG str. Mexico	11809640
YP_005170823.1	CDS	PE_PGRS24	NC_016804.1	1484947	1486758	R	Differs from Rv1325c by 1aa, A320T in Mycobacterium bovis BCG Pasteur and Mexico. In BCG Tokyo differs, there are deleted in Mycobacterium bovis BCG Tokyo.; PE-PGRS family protein	complement(1484947..1486758)	Mycobacterium bovis BCG str. Mexico	11809641
YP_005170824.1	CDS	glgB	NC_016804.1	1486910	1489105	R	Differs from Rv1326c by 3aa, G40D, S468P, P470S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; glycogen branching enzyme	complement(1486910..1489105)	Mycobacterium bovis BCG str. Mexico	11809642
YP_005170825.1	CDS	glgE	NC_016804.1	1489113	1491218	R	putative glucanase	complement(1489113..1491218)	Mycobacterium bovis BCG str. Mexico	11809643
YP_005170826.1	CDS	glgP	NC_016804.1	1491357	1493948	D	Differs from Rv1328 by 3aa, G532D, F576V, S801A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative glycogen phosphorylase	1491357..1493948	Mycobacterium bovis BCG str. Mexico	11809644
YP_005170827.1	CDS	dinG	NC_016804.1	1493988	1495982	R	putative ATP-dependent helicase DinG-like protein	complement(1493988..1495982)	Mycobacterium bovis BCG str. Mexico	11809645
YP_005170828.1	CDS	BCGMEX_1364c	NC_016804.1	1496006	1497352	R	Differs from Rv1330c by 1aa, A429D and from Mb1365c by 1aa, E358K in BCG Pasteur,  BCG Tokyo and BCG Mexico; nicotinate phosphoribosyltransferase	complement(1496006..1497352)	Mycobacterium bovis BCG str. Mexico	11809646
YP_005170829.1	CDS	clpS	NC_016804.1	1497454	1497759	D	ATP-dependent Clp protease adaptor protein	1497454..1497759	Mycobacterium bovis BCG str. Mexico	11809647
YP_005170830.1	CDS	BCGMEX_1366	NC_016804.1	1497719	1498375	D	putative transcriptional regulatory protein	1497719..1498375	Mycobacterium bovis BCG str. Mexico	11809648
YP_005170831.1	CDS	BCGMEX_1367	NC_016804.1	1498392	1499426	D	putative hydrolase	1498392..1499426	Mycobacterium bovis BCG str. Mexico	11809649
YP_005170832.1	CDS	BCGMEX_1368	NC_016804.1	1499461	1499874	D	hypothetical protein	1499461..1499874	Mycobacterium bovis BCG str. Mexico	11809650
YP_005170833.1	CDS	BCGMEX_1369	NC_016804.1	1499896	1500177	D	9.5 kDa culture filtrate antigen cfp10A	1499896..1500177	Mycobacterium bovis BCG str. Mexico	11809651
YP_005170834.1	CDS	cysM	NC_016804.1	1500187	1501158	D	putative cysteine synthase B	1500187..1501158	Mycobacterium bovis BCG str. Mexico	11809652
YP_005170835.1	CDS	BCGMEX_1371	NC_016804.1	1501149	1501871	D	putative integral membrane protein	1501149..1501871	Mycobacterium bovis BCG str. Mexico	11809653
YP_005170836.1	CDS	murI	NC_016804.1	1501868	1502683	D	Differs from Rv1338 and Mb1373 by 1aa, L154R in BCG Pasteur, BCG Tokyo and BCG Mexico; glutamate racemase	1501868..1502683	Mycobacterium bovis BCG str. Mexico	11809654
YP_005170837.1	CDS	BCGMEX_1373	NC_016804.1	1502710	1503531	D	hypothetical protein	1502710..1503531	Mycobacterium bovis BCG str. Mexico	11809655
YP_005170838.1	CDS	rph	NC_016804.1	1503548	1504327	D	Differs from Mb1375 by 1aa, G97S in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasrteur, BCG Tokyo and BCG Mexico; ribonuclease	1503548..1504327	Mycobacterium bovis BCG str. Mexico	11809656
YP_005170839.1	CDS	BCGMEX_1375	NC_016804.1	1504366	1504980	D	putative deoxyribonucleotide triphosphate pyrophosphatase	1504366..1504980	Mycobacterium bovis BCG str. Mexico	11809657
YP_005170840.1	CDS	BCGMEX_1376c	NC_016804.1	1504977	1505339	R	hypothetical protein	complement(1504977..1505339)	Mycobacterium bovis BCG str. Mexico	11809658
YP_005170841.1	CDS	lprD	NC_016804.1	1505336	1505716	R	Differs from Rv1343c by 1aa, A81E in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative lipoprotein	complement(1505336..1505716)	Mycobacterium bovis BCG str. Mexico	11809659
YP_005170842.1	CDS	BCGMEX_1378	NC_016804.1	1505761	1506081	D	acyl carrier protein	1505761..1506081	Mycobacterium bovis BCG str. Mexico	11809660
YP_005170843.1	CDS	fadD33	NC_016804.1	1506074	1507639	D	acyl-CoA synthetase	1506074..1507639	Mycobacterium bovis BCG str. Mexico	11809661
YP_005170844.1	CDS	fadE14	NC_016804.1	1507639	1508799	D	putative acyl-CoA dehydrogenase	1507639..1508799	Mycobacterium bovis BCG str. Mexico	11809662
YP_005170845.1	CDS	BCGMEX_1381c	NC_016804.1	1508766	1509398	R	hypothetical protein	complement(1508766..1509398)	Mycobacterium bovis BCG str. Mexico	11809663
YP_005170846.1	CDS	BCGMEX_1382	NC_016804.1	1509840	1512419	D	putative drugs-transport transmembrane ATP-binding protein ABC transporter	1509840..1512419	Mycobacterium bovis BCG str. Mexico	11809665
YP_005170847.1	CDS	BCGMEX_1383	NC_016804.1	1512416	1514155	D	putative drugs-transport transmembrane ATP-binding protein ABC transporter	1512416..1514155	Mycobacterium bovis BCG str. Mexico	11809666
YP_005170848.1	CDS	fabG	NC_016804.1	1514284	1515027	D	putative 3-oxoacyl-[acyl-carrier protein] reductase	1514284..1515027	Mycobacterium bovis BCG str. Mexico	11809667
YP_005170849.1	CDS	BCGMEX_1385	NC_016804.1	1515024	1515353	D	hypothetical protein	1515024..1515353	Mycobacterium bovis BCG str. Mexico	11809668
YP_005170850.1	CDS	BCGMEX_1386	NC_016804.1	1515556	1515927	D	hypothetical protein	1515556..1515927	Mycobacterium bovis BCG str. Mexico	11809669
YP_005170851.1	CDS	BCGMEX_1387c	NC_016804.1	1515993	1516778	R	putative transcriptional regulatory protein	complement(1515993..1516778)	Mycobacterium bovis BCG str. Mexico	11809670
YP_005170852.1	CDS	BCGMEX_1388c	NC_016804.1	1516798	1518669	R	hypothetical protein	complement(1516798..1518669)	Mycobacterium bovis BCG str. Mexico	11809671
YP_005170853.1	CDS	moeY	NC_016804.1	1518678	1520825	R	Differs from Rv1355c by 1aa (P81L) in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative molybdopterin biosynthesis protein	complement(1518678..1520825)	Mycobacterium bovis BCG str. Mexico	11809672
YP_005170854.1	CDS	BCGMEX_1390c	NC_016804.1	1520822	1521613	R	hypothetical protein	complement(1520822..1521613)	Mycobacterium bovis BCG str. Mexico	11809673
YP_005170855.1	CDS	BCGMEX_1391c	NC_016804.1	1522086	1523009	R	Differs from Rv1357c and Mb1392c by 1aa, S276T in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1522086..1523009)	Mycobacterium bovis BCG str. Mexico	11809674
YP_005170856.1	CDS	BCGMEX_1392	NC_016804.1	1523405	1526884	D	Differs from Rv1358 by 1aa A442D, and from Mb1393 by 1aa, G31V in BCG Pasteur, BCG Tokyo and BCG Mexico; putative transcriptional regulatory protein	1523405..1526884	Mycobacterium bovis BCG str. Mexico	11809675
YP_005170857.1	CDS	BCGMEX_1393	NC_016804.1	1526966	1527718	D	Differs from Mb1394 by 1aa, G187R in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transcriptional regulatory protein	1526966..1527718	Mycobacterium bovis BCG str. Mexico	11809676
YP_005170858.1	CDS	BCGMEX_1394	NC_016804.1	1528141	1529163	D	putative oxidoreductase	1528141..1529163	Mycobacterium bovis BCG str. Mexico	11809677
YP_005170859.1	CDS	PPE19	NC_016804.1	1529236	1530426	R	Differs from Rv1361c by 3aa, Q30K, V55T, P325Q in BCG Pasteur, BCG Tokyo and BCG Mexico, and more extensively from Mb1396c due to several substitutions, transitions and transversions between codons 158-260; PPE family protein	complement(1529236..1530426)	Mycobacterium bovis BCG str. Mexico	11809678
YP_005170860.1	CDS	BCGMEX_1396c	NC_016804.1	1530741	1531403	R	Differs from Rv1362c by 1aa, G103V Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1530741..1531403)	Mycobacterium bovis BCG str. Mexico	11809679
YP_005170861.1	CDS	BCGMEX_1397c	NC_016804.1	1531400	1532185	R	Differs from Mb1398c by 1aa, T155N in Mycobacterium tuberculosis H37Rv, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1531400..1532185)	Mycobacterium bovis BCG str. Mexico	11809680
YP_005170862.1	CDS	BCGMEX_1398c	NC_016804.1	1532476	1534437	R	Differs from Rv1364c by 2aa, T236A, E465A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1532476..1534437)	Mycobacterium bovis BCG str. Mexico	11809681
YP_005170863.1	CDS	BCGMEX_1399c	NC_016804.1	1534576	1534962	R	Differs from Rv1365c by 1aa, K82E in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; anti-sigma factor antagonist	complement(1534576..1534962)	Mycobacterium bovis BCG str. Mexico	11809682
YP_005170864.1	CDS	BCGMEX_1400	NC_016804.1	1535183	1536004	D	hypothetical protein	1535183..1536004	Mycobacterium bovis BCG str. Mexico	11809683
YP_005170865.1	CDS	BCGMEX_1401c	NC_016804.1	1536305	1537438	R	Differs from Rv1367c by 1aa, V169I in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1536305..1537438)	Mycobacterium bovis BCG str. Mexico	11809684
YP_005170866.1	CDS	lprF	NC_016804.1	1537813	1538598	D	putative lipoprotein	1537813..1538598	Mycobacterium bovis BCG str. Mexico	11809685
YP_005170867.1	CDS	BCGMEX_1403	NC_016804.1	1538794	1539747	D	In Mycobacterium tuberculosis strain H37Rv, Rv1371 exists as a single gene. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium bovis, a frameshift due to a single base insertion splits Rv1371 into 2 parts, with the latter being the more likely product; hypothetical protein	1538794..1539747	Mycobacterium bovis BCG str. Mexico	11809686
YP_005170868.1	CDS	BCGMEX_1404	NC_016804.1	1539269	1540264	D	In Mycobacterium tuberculosis strain H37Rv, Rv1371 exists as a single gene. In Mycobacterium bovis, a frameshift due to a single base insertion splits Rv1371 into 2 parts, with the latter being the more likely product. Differs from both Mb1405 and Rv1371 by 1aa, V210I in Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1539269..1540264	Mycobacterium bovis BCG str. Mexico	11809687
YP_005170869.1	CDS	BCGMEX_1405	NC_016804.1	1540261	1541442	D	Differs from Rv1372 and Mb1406 by 2aa, N75K, A101T in Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1540261..1541442	Mycobacterium bovis BCG str. Mexico	11809688
YP_005170870.1	CDS	BCGMEX_1406	NC_016804.1	1541448	1542431	D	In Mycobacterium tuberculosis strain H37Rv, Rv1373 exists as a single gene as is the case in Mycobacterium bovis BCG Pasteur and BCG Mexico. In Mycobacterium bovis, a frameshift due to a single base insertion splits Rv1373 into 2 parts, Mb1407 and Mb1408. Differs from Rv1373 by 2aa, additional P, P155, and L232P. In Mycobacterium bovis BCG Tokyo, a frameshift due to two base insertions splits Rv1373 into 2 parts (182 aa, 155 aa).; glycolipid sulfotransferase	1541448..1542431	Mycobacterium bovis BCG str. Mexico	11809689
YP_005170871.1	CDS	BCGMEX_1407c	NC_016804.1	1542511	1542969	R	Differs from Rv1374c by 1aa, A136T in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1542511..1542969)	Mycobacterium bovis BCG str. Mexico	11809690
YP_005170872.1	CDS	BCGMEX_1408	NC_016804.1	1543271	1544590	D	Differs from Rv1375 by 1aa, R86G, and from Mb1410by 1aa, R322P in Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1543271..1544590	Mycobacterium bovis BCG str. Mexico	11809691
YP_005170873.1	CDS	BCGMEX_1409	NC_016804.1	1544587	1546080	D	Differs from Rv1376 by 1aa, P236R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1544587..1546080	Mycobacterium bovis BCG str. Mexico	11809692
YP_005170874.1	CDS	BCGMEX_1410c	NC_016804.1	1546018	1546656	R	putative transferase	complement(1546018..1546656)	Mycobacterium bovis BCG str. Mexico	11809693
YP_005170875.1	CDS	BCGMEX_1411c	NC_016804.1	1546667	1548094	R	Differs from Rv1378c by 1aa, W37R, and from Mb1413c by 1aa, R9H in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1546667..1548094)	Mycobacterium bovis BCG str. Mexico	11809694
YP_005170876.1	CDS	pyrR	NC_016804.1	1548093	1548674	D	Pyrimidine regulatory protein	1548093..1548674	Mycobacterium bovis BCG str. Mexico	11809695
YP_005170877.1	CDS	pyrB	NC_016804.1	1548671	1549630	D	aspartate carbamoyltransferase catalytic subunit	1548671..1549630	Mycobacterium bovis BCG str. Mexico	11809696
YP_005170878.1	CDS	pyrC	NC_016804.1	1549627	1550919	D	Differs from Rv1381 by 1aa, F189V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; dihydroorotase	1549627..1550919	Mycobacterium bovis BCG str. Mexico	11809697
YP_005170879.1	CDS	BCGMEX_1415	NC_016804.1	1550916	1551413	D	putative export or membrane protein	1550916..1551413	Mycobacterium bovis BCG str. Mexico	11809698
YP_005170880.1	CDS	carA	NC_016804.1	1551410	1552540	D	Differs from Rv1383 by 1aa, G118A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative carbamoyl-phosphate synthase small chain	1551410..1552540	Mycobacterium bovis BCG str. Mexico	11809699
YP_005170881.1	CDS	carB	NC_016804.1	1552540	1555887	D	Differs from Rv1384 by 1aa, E821A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; carbamoyl-phosphate synthase large chain	1552540..1555887	Mycobacterium bovis BCG str. Mexico	11809700
YP_005170882.1	CDS	pyrF	NC_016804.1	1555884	1556708	D	Orotidine 5'-phosphate decarboxylase	1555884..1556708	Mycobacterium bovis BCG str. Mexico	11809701
YP_005170883.1	CDS	PE15	NC_016804.1	1556903	1557211	D	PE family protein	1556903..1557211	Mycobacterium bovis BCG str. Mexico	11809702
YP_005170884.1	CDS	PPE20	NC_016804.1	1557208	1558827	D	Differs from Rv1387 by 1aa, A94V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; PPE family protein	1557208..1558827	Mycobacterium bovis BCG str. Mexico	11809703
YP_005170885.1	CDS	mihF	NC_016804.1	1559133	1559705	D	putative integration host factor	1559133..1559705	Mycobacterium bovis BCG str. Mexico	11809704
YP_005170886.1	CDS	gmk	NC_016804.1	1559840	1560466	D	guanylate kinase	1559840..1560466	Mycobacterium bovis BCG str. Mexico	11809705
YP_005170887.1	CDS	rpoZ	NC_016804.1	1560532	1560864	D	DNA-directed RNA polymerase subunit omega	1560532..1560864	Mycobacterium bovis BCG str. Mexico	11809706
YP_005170888.1	CDS	dfp	NC_016804.1	1560880	1562136	D	putative bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase	1560880..1562136	Mycobacterium bovis BCG str. Mexico	11809707
YP_005170889.1	CDS	metK	NC_016804.1	1562264	1563475	D	Differs from Rv1392 by 1aa, Q195R, and from Mb1427 by 2aa, T60A Q195R in BCG Pasteur, BCG Tokyo and BCG Mexico; S-adenosylmethionine synthetase	1562264..1563475	Mycobacterium bovis BCG str. Mexico	11809708
YP_005170890.1	CDS	BCGMEX_1426c	NC_016804.1	1563548	1565026	R	putative monooxygenase	complement(1563548..1565026)	Mycobacterium bovis BCG str. Mexico	11809709
YP_005170891.1	CDS	cyp132	NC_016804.1	1565023	1566408	R	Differs from Rv1394c by 1aa, L135R in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative cytochrome P450 132	complement(1565023..1566408)	Mycobacterium bovis BCG str. Mexico	11809710
YP_005170892.1	CDS	BCGMEX_1428	NC_016804.1	1566486	1567520	D	putative transcriptional regulator	1566486..1567520	Mycobacterium bovis BCG str. Mexico	11809711
YP_005170893.1	CDS	PE_PGRS25	NC_016804.1	1567566	1568924	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium bovis, a 372 bp deletion leads to a shorter product with a different COOH part compared to its homolog in Mycobacterium tuberculosis strain H37Rv (452 aa versus 576 aa). Differs from Rv1396c by 2 aa, S66R, H300R in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; PE-PGRS family protein	complement(1567566..1568924)	Mycobacterium bovis BCG str. Mexico	11809712
YP_005170894.1	CDS	BCGMEX_1430c	NC_016804.1	1569179	1569580	R	Differs from Rv1397c by 1aa, G103D in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1569179..1569580)	Mycobacterium bovis BCG str. Mexico	11809713
YP_005170895.1	CDS	BCGMEX_1431c	NC_016804.1	1569577	1569834	R	hypothetical protein	complement(1569577..1569834)	Mycobacterium bovis BCG str. Mexico	11809714
YP_005170896.1	CDS	lipH	NC_016804.1	1569917	1570876	R	Differs from Rv1399c and Mb1434c by 1aa, A46P in BCG Pasteur, BCG Tokyo and BCG Mexico; putative lipase	complement(1569917..1570876)	Mycobacterium bovis BCG str. Mexico	11809715
YP_005170897.1	CDS	lipI	NC_016804.1	1570901	1571863	R	putative lipase	complement(1570901..1571863)	Mycobacterium bovis BCG str. Mexico	11809716
YP_005170898.1	CDS	BCGMEX_1434	NC_016804.1	1571997	1572599	D	hypothetical protein	1571997..1572599	Mycobacterium bovis BCG str. Mexico	11809717
YP_005170899.1	CDS	priA	NC_016804.1	1572680	1574647	D	primosome assembly protein	1572680..1574647	Mycobacterium bovis BCG str. Mexico	11809718
YP_005170900.1	CDS	BCGMEX_1436c	NC_016804.1	1574665	1575489	R	putative methyltransferase	complement(1574665..1575489)	Mycobacterium bovis BCG str. Mexico	11809719
YP_005170901.1	CDS	BCGMEX_1437	NC_016804.1	1575658	1576140	D	putative transcriptional regulatory protein	1575658..1576140	Mycobacterium bovis BCG str. Mexico	11809720
YP_005170902.1	CDS	BCGMEX_1438c	NC_016804.1	1576212	1577036	R	putative methyltransferase	complement(1576212..1577036)	Mycobacterium bovis BCG str. Mexico	11809721
YP_005170903.1	CDS	fmt	NC_016804.1	1577233	1578171	D	methionyl-tRNA formyltransferase	1577233..1578171	Mycobacterium bovis BCG str. Mexico	11809722
YP_005170904.1	CDS	fmu	NC_016804.1	1578168	1579541	D	Differs from Rv1407 by 1aa, L427I in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative fmu protein	1578168..1579541	Mycobacterium bovis BCG str. Mexico	11809723
YP_005170905.1	CDS	rpe	NC_016804.1	1579566	1580264	D	ribulose-phosphate 3-epimerase	1579566..1580264	Mycobacterium bovis BCG str. Mexico	11809724
YP_005170906.1	CDS	ribG	NC_016804.1	1580261	1581280	D	Differs from Rv1409 by 2aa, N30K, T71A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; diaminohydroxyphosphoribosylaminopyrimidine deaminase, 5-amino-6-(5-phosphoribosylamino) uracil reductase; putative riboflavin biosynthesis protein	1580261..1581280	Mycobacterium bovis BCG str. Mexico	11809725
YP_005170907.1	CDS	BCGMEX_1443c	NC_016804.1	1581277	1582833	R	aminoglycosides/tetracycline-transport integral membrane protein	complement(1581277..1582833)	Mycobacterium bovis BCG str. Mexico	11809726
YP_005170908.1	CDS	lprG	NC_016804.1	1582839	1583549	R	putative lipoprotein	complement(1582839..1583549)	Mycobacterium bovis BCG str. Mexico	11809727
YP_005170909.1	CDS	ribC	NC_016804.1	1583634	1584239	D	riboflavin synthase subunit alpha	1583634..1584239	Mycobacterium bovis BCG str. Mexico	11809728
YP_005170910.1	CDS	BCGMEX_1446	NC_016804.1	1584453	1584968	D	hypothetical protein	1584453..1584968	Mycobacterium bovis BCG str. Mexico	11809729
YP_005170911.1	CDS	BCGMEX_1447	NC_016804.1	1584958	1585359	D	hypothetical protein	1584958..1585359	Mycobacterium bovis BCG str. Mexico	11809730
YP_005170912.1	CDS	ribA2	NC_016804.1	1585464	1586741	D	GTP cyclohydrolase II protein; 3,4-dihydroxy-2-butanone 4-phosphate synthase	1585464..1586741	Mycobacterium bovis BCG str. Mexico	11809731
YP_005170913.1	CDS	ribH	NC_016804.1	1586756	1587220	D	riboflavin synthase subunit beta	1586756..1587220	Mycobacterium bovis BCG str. Mexico	11809732
YP_005170914.1	CDS	BCGMEX_1450	NC_016804.1	1587217	1587681	D	hypothetical protein	1587217..1587681	Mycobacterium bovis BCG str. Mexico	11809733
YP_005170915.1	CDS	lprH	NC_016804.1	1587706	1588392	D	putative lipoprotein	1587706..1588392	Mycobacterium bovis BCG str. Mexico	11809734
YP_005170916.1	CDS	BCGMEX_1452	NC_016804.1	1588572	1589045	D	hypothetical protein	1588572..1589045	Mycobacterium bovis BCG str. Mexico	11809735
YP_005170917.1	CDS	uvrC	NC_016804.1	1589109	1591049	D	excinuclease ABC subunit C	1589109..1591049	Mycobacterium bovis BCG str. Mexico	11809736
YP_005170918.1	CDS	BCGMEX_1454	NC_016804.1	1591046	1591951	D	nucleotide-binding protein	1591046..1591951	Mycobacterium bovis BCG str. Mexico	11809737
YP_005170919.1	CDS	BCGMEX_1455	NC_016804.1	1591948	1592976	D	Differs from Mb1457 by 1aa, A86V in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1591948..1592976	Mycobacterium bovis BCG str. Mexico	11809738
YP_005170920.1	CDS	whiA	NC_016804.1	1592973	1593950	D	putative transcriptional regulatory protein	1592973..1593950	Mycobacterium bovis BCG str. Mexico	11809739
YP_005170921.1	CDS	BCGMEX_1457c	NC_016804.1	1593960	1594721	R	hypothetical protein	complement(1593960..1594721)	Mycobacterium bovis BCG str. Mexico	11809740
YP_005170922.1	CDS	BCGMEX_1458	NC_016804.1	1594725	1596104	D	Differs from Rv1425 by 1aa, L343P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1594725..1596104	Mycobacterium bovis BCG str. Mexico	11809741
YP_005170923.1	CDS	lipO	NC_016804.1	1596126	1597388	R	putative esterase	complement(1596126..1597388)	Mycobacterium bovis BCG str. Mexico	11809742
YP_005170924.1	CDS	fadD12	NC_016804.1	1597388	1598995	R	acyl-CoA synthetase	complement(1597388..1598995)	Mycobacterium bovis BCG str. Mexico	11809743
YP_005170925.1	CDS	BCGMEX_1461c	NC_016804.1	1598999	1599826	R	hypothetical protein	complement(1598999..1599826)	Mycobacterium bovis BCG str. Mexico	11809744
YP_005170926.1	CDS	BCGMEX_1462	NC_016804.1	1599945	1601213	D	hypothetical protein	1599945..1601213	Mycobacterium bovis BCG str. Mexico	11809745
YP_005170927.1	CDS	PE16	NC_016804.1	1601453	1603039	D	PE family protein	1601453..1603039	Mycobacterium bovis BCG str. Mexico	11809746
YP_005170928.1	CDS	BCGMEX_1464	NC_016804.1	1603150	1604919	D	hypothetical protein	1603150..1604919	Mycobacterium bovis BCG str. Mexico	11809747
YP_005170929.1	CDS	BCGMEX_1465	NC_016804.1	1604916	1606337	D	putative dehydrogenase	1604916..1606337	Mycobacterium bovis BCG str. Mexico	11809748
YP_005170930.1	CDS	BCGMEX_1466	NC_016804.1	1606501	1607322	D	Differs from Rv1433 and Mb1468 at C-terminal end due to 1bp deletion in Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1606501..1607322	Mycobacterium bovis BCG str. Mexico	11809749
YP_005170931.1	CDS	BCGMEX_1467	NC_016804.1	1607322	1607459	D	hypothetical protein	1607322..1607459	Mycobacterium bovis BCG str. Mexico	11809750
YP_005170932.1	CDS	BCGMEX_1468c	NC_016804.1	1607408	1608037	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium bovis, an in-frame insertion of 21 bp leads to a longer product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (209 aa versus 202 aa). Differs from Rv1435c by 1aa, T67A in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; Proline, Glycine, Valine-rich secreted protein	complement(1607408..1608037)	Mycobacterium bovis BCG str. Mexico	11809751
YP_005170933.1	CDS	gap	NC_016804.1	1608394	1609413	D	NAD-dependent glyceraldehyde-3-phosphate dehydrogenase	1608394..1609413	Mycobacterium bovis BCG str. Mexico	11809752
YP_005170934.1	CDS	pgk	NC_016804.1	1609416	1610654	D	phosphoglycerate kinase	1609416..1610654	Mycobacterium bovis BCG str. Mexico	11809753
YP_005170935.1	CDS	tpiA	NC_016804.1	1610651	1611436	D	Differs from Rv1438 and Mb1473 by 1aa, T169I in BCG Pasteur, BCG Tokyo and BCG Mexico; triosephosphate isomerase	1610651..1611436	Mycobacterium bovis BCG str. Mexico	11809754
YP_005170936.1	CDS	BCGMEX_1472c	NC_016804.1	1612048	1612473	R	hypothetical protein	complement(1612048..1612473)	Mycobacterium bovis BCG str. Mexico	11809755
YP_005170937.1	CDS	secG	NC_016804.1	1612924	1613157	D	preprotein translocase subunit	1612924..1613157	Mycobacterium bovis BCG str. Mexico	11809756
YP_005170938.1	CDS	PE_PGRS26	NC_016804.1	1613296	1614771	R	Differs from Rv1441c by 1aa G236D and from Mb1476c by 1aa T354N in BCG Pasteur, BCG Tokyo and BCG Mexico; PE-PGRS family protein	complement(1613296..1614771)	Mycobacterium bovis BCG str. Mexico	11809757
YP_005170939.1	CDS	bisC	NC_016804.1	1614878	1617178	D	putative biotin sulfoxide reductase	1614878..1617178	Mycobacterium bovis BCG str. Mexico	11809758
YP_005170940.1	CDS	BCGMEX_1476c	NC_016804.1	1617294	1617779	R	hypothetical protein	complement(1617294..1617779)	Mycobacterium bovis BCG str. Mexico	11809759
YP_005170941.1	CDS	BCGMEX_1477c	NC_016804.1	1618378	1618788	R	hypothetical protein	complement(1618378..1618788)	Mycobacterium bovis BCG str. Mexico	11809760
YP_005170942.1	CDS	devB	NC_016804.1	1618805	1619548	R	putative 6-phosphogluconolactonase	complement(1618805..1619548)	Mycobacterium bovis BCG str. Mexico	11809761
YP_005170943.1	CDS	opcA	NC_016804.1	1619545	1620456	R	Differs from Rv1446v by 1aa P192R in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico.; putative OxpP cycle protein	complement(1619545..1620456)	Mycobacterium bovis BCG str. Mexico	11809762
YP_005170944.1	CDS	zwf2	NC_016804.1	1620509	1622053	R	glucose-6-phosphate 1-dehydrogenase	complement(1620509..1622053)	Mycobacterium bovis BCG str. Mexico	11809763
YP_005170945.1	CDS	tal	NC_016804.1	1622050	1623171	R	Differs from Rv1448c by 1aa A244T in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Transaldolase	complement(1622050..1623171)	Mycobacterium bovis BCG str. Mexico	11809764
YP_005170946.1	CDS	tkt	NC_016804.1	1623188	1625290	R	Differs from Rv1449c by 1aa D18Y in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; transketolase	complement(1623188..1625290)	Mycobacterium bovis BCG str. Mexico	11809765
YP_005170947.1	CDS	PE_PGRS27	NC_016804.1	1625729	1629928	R	In Mycobacterium bovis, insertions of 27 bp, 207 bpand 27 bp, substitutions of 60 bp to 63 bp and 11 bp, and a 27 bp deletion, leads to a longer product compared to the homolog in Mycobacterium tuberculosis strain H37Rv (1408 aa versus 1329 aa). In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, one 27bp-insertion is missing, leading to a product of 1399 aa; PE-PGRS family protein	complement(1625729..1629928)	Mycobacterium bovis BCG str. Mexico	11809766
YP_005170948.1	CDS	ctaB	NC_016804.1	1630330	1631256	D	Differs from Rv1451 by 1aa T68A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; protoheme IX farnesyltransferase	1630330..1631256	Mycobacterium bovis BCG str. Mexico	11809767
YP_005170949.1	CDS	PE_PGRS28	NC_016804.1	1631305	1633527	R	In Mycobacterium bovis BCG Pasteur, Tokyo and BCG Mexico, a insertion of 51 bp, several substitutions and a deletion of 207 bp, lead to a smaller product compared to its homolog Mycobacterium bovis (740 aa versus 795 aa). Differs from BCG_1513c by 5aa, G647D, G648I, D649I, G650V, T651A in BCG Tokyo.; PE-PGRS family protein	complement(1631305..1633527)	Mycobacterium bovis BCG str. Mexico	11809768
YP_005170950.1	CDS	BCGMEX_1486	NC_016804.1	1633679	1634944	D	Differs from Rv1453 by 1aa Q405P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transcriptional activator protein	1633679..1634944	Mycobacterium bovis BCG str. Mexico	11809769
YP_005170951.1	CDS	qor	NC_016804.1	1634972	1635958	R	putative quinone reductase	complement(1634972..1635958)	Mycobacterium bovis BCG str. Mexico	11809770
YP_005170952.1	CDS	BCGMEX_1488	NC_016804.1	1635978	1636841	D	hypothetical protein	1635978..1636841	Mycobacterium bovis BCG str. Mexico	11809771
YP_005170953.1	CDS	BCGMEX_1489c	NC_016804.1	1636791	1637723	R	putative unidentified antibiotic-transport integral membrane ABC transporter	complement(1636791..1637723)	Mycobacterium bovis BCG str. Mexico	11809772
YP_005170954.1	CDS	BCGMEX_1490c	NC_016804.1	1637835	1638620	R	putative unidentified antibiotic-transport integral membrane ABC transporter	complement(1637835..1638620)	Mycobacterium bovis BCG str. Mexico	11809773
YP_005170955.1	CDS	BCGMEX_1491c	NC_016804.1	1638617	1639558	R	putative unidentified antibiotic-transport ATP-binding protein ABC transporter	complement(1638617..1639558)	Mycobacterium bovis BCG str. Mexico	11809774
YP_005170956.1	CDS	BCGMEX_1492c	NC_016804.1	1639714	1641489	R	Differs from Rv1459c by 1aa, E113K in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative integral membrane protein	complement(1639714..1641489)	Mycobacterium bovis BCG str. Mexico	11809775
YP_005170957.1	CDS	BCGMEX_1493	NC_016804.1	1641537	1642343	D	Differs from Rv1460 by 2aa, F198I, V265 and from Mb1495 by 1aa, F198I in BCG Paasteur, BCG Tokyo and BCG Mexico; transcriptional regulator	1641537..1642343	Mycobacterium bovis BCG str. Mexico	11809776
YP_005170958.1	CDS	BCGMEX_1494	NC_016804.1	1642340	1644880	D	hypothetical protein	1642340..1644880	Mycobacterium bovis BCG str. Mexico	11809777
YP_005170959.1	CDS	BCGMEX_1495	NC_016804.1	1644877	1646070	D	Differs from Rv1462 by 1aa, D183N in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1644877..1646070	Mycobacterium bovis BCG str. Mexico	11809778
YP_005170960.1	CDS	BCGMEX_1496	NC_016804.1	1646067	1646867	D	putative ATP-binding protein ABC transporter	1646067..1646867	Mycobacterium bovis BCG str. Mexico	11809779
YP_005170961.1	CDS	csd	NC_016804.1	1646869	1648122	D	putative cysteine desulfurase	1646869..1648122	Mycobacterium bovis BCG str. Mexico	11809780
YP_005170962.1	CDS	BCGMEX_1498	NC_016804.1	1648119	1648607	D	putative nitrogen fixation related protein	1648119..1648607	Mycobacterium bovis BCG str. Mexico	11809781
YP_005170963.1	CDS	BCGMEX_1499	NC_016804.1	1648582	1648929	D	hypothetical protein	1648582..1648929	Mycobacterium bovis BCG str. Mexico	11809782
YP_005170964.1	CDS	fadE15	NC_016804.1	1649024	1650853	R	putative acyl-CoA dehydrogenase	complement(1649024..1650853)	Mycobacterium bovis BCG str. Mexico	11809783
YP_005170965.1	CDS	PE_PGRS29	NC_016804.1	1650960	1652072	R	PE-PGRS family protein	complement(1650960..1652072)	Mycobacterium bovis BCG str. Mexico	11809784
YP_005170966.1	CDS	ctpD	NC_016804.1	1652314	1654287	D	putative cation transporter P-type ATPase D	1652314..1654287	Mycobacterium bovis BCG str. Mexico	11809785
YP_005170967.1	CDS	trxA	NC_016804.1	1654331	1654705	D	putative thioredoxin	1654331..1654705	Mycobacterium bovis BCG str. Mexico	11809786
YP_005170968.1	CDS	trxB1	NC_016804.1	1654721	1655092	D	putative thioredoxin	1654721..1655092	Mycobacterium bovis BCG str. Mexico	11809787
YP_005170969.1	CDS	echA12	NC_016804.1	1655114	1655971	D	Differs from Rv1472 by 1aa, S78P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Enoyl-CoA hydratase	1655114..1655971	Mycobacterium bovis BCG str. Mexico	11809788
YP_005170970.1	CDS	BCGMEX_1506	NC_016804.1	1656007	1657635	D	putative macrolide-transport ATP-binding protein ABC transporter	1656007..1657635	Mycobacterium bovis BCG str. Mexico	11809789
YP_005170971.1	CDS	BCGMEX_1507	NC_016804.1	1657732	1657923	D	Differs from Rv1473A by 1aa, P60S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; transcriptional regulator	1657732..1657923	Mycobacterium bovis BCG str. Mexico	11809790
YP_005170972.1	CDS	BCGMEX_1508c	NC_016804.1	1657992	1658555	R	putative transcriptional regulatory protein	complement(1657992..1658555)	Mycobacterium bovis BCG str. Mexico	11809791
YP_005170973.1	CDS	acn	NC_016804.1	1658566	1661397	R	aconitate hydratase	complement(1658566..1661397)	Mycobacterium bovis BCG str. Mexico	11809792
YP_005170974.1	CDS	BCGMEX_1510	NC_016804.1	1661555	1662115	D	hypothetical protein	1661555..1662115	Mycobacterium bovis BCG str. Mexico	11809793
YP_005170975.1	CDS	BCGMEX_1511	NC_016804.1	1662341	1663759	D	putative invasion protein	1662341..1663759	Mycobacterium bovis BCG str. Mexico	11809794
YP_005170976.1	CDS	BCGMEX_1512	NC_016804.1	1663770	1664495	D	putative invasion protein	1663770..1664495	Mycobacterium bovis BCG str. Mexico	11809795
YP_005170977.1	CDS	moxR1	NC_016804.1	1664634	1665767	D	putative transcriptional regulatory protein	1664634..1665767	Mycobacterium bovis BCG str. Mexico	11809796
YP_005170978.1	CDS	BCGMEX_1514	NC_016804.1	1665764	1666717	D	hypothetical protein	1665764..1666717	Mycobacterium bovis BCG str. Mexico	11809797
YP_005170979.1	CDS	BCGMEX_1515	NC_016804.1	1666728	1667735	D	Differs from Rv1481 and Mb1517 by 1aa, D254N in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1666728..1667735	Mycobacterium bovis BCG str. Mexico	11809798
YP_005170980.1	CDS	BCGMEX_1516c	NC_016804.1	1667808	1668650	R	hypothetical protein	complement(1667808..1668650)	Mycobacterium bovis BCG str. Mexico	11809799
YP_005170981.1	CDS	fabG1	NC_016804.1	1668791	1669534	D	putative 3-oxoacyl-[acyl-carrier protein] reductase	1668791..1669534	Mycobacterium bovis BCG str. Mexico	11809800
YP_005170982.1	CDS	inhA	NC_016804.1	1669553	1670362	D	Enoyl-[acyl-carrier-protein] reductase	1669553..1670362	Mycobacterium bovis BCG str. Mexico	11809801
YP_005170983.1	CDS	hemZ	NC_016804.1	1670368	1671402	D	ferrochelatase	1670368..1671402	Mycobacterium bovis BCG str. Mexico	11809802
YP_005170984.1	CDS	BCGMEX_1520	NC_016804.1	1671264	1672235	R	First 270 aa similar to Mb1522c and Rv1486c (but differs by 1aa, N198K), then frameshifts due to extra base. 2GC in BCG Tokyo, 1GC in BCG Pasteur and BCG Mexico; hypothetical protein	complement(1671264..1672235)	Mycobacterium bovis BCG str. Mexico	11809803
YP_005170985.1	CDS	BCGMEX_1521	NC_016804.1	1672293	1672727	D	hypothetical protein	1672293..1672727	Mycobacterium bovis BCG str. Mexico	11809804
YP_005170986.1	CDS	BCGMEX_1522	NC_016804.1	1672749	1673894	D	hypothetical protein	1672749..1673894	Mycobacterium bovis BCG str. Mexico	11809805
YP_005170987.1	CDS	BCGMEX_1523	NC_016804.1	1673904	1674260	D	hypothetical protein	1673904..1674260	Mycobacterium bovis BCG str. Mexico	11809806
YP_005170988.1	CDS	BCGMEX_1524	NC_016804.1	1674294	1674524	D	hypothetical protein	1674294..1674524	Mycobacterium bovis BCG str. Mexico	11809807
YP_005170989.1	CDS	BCGMEX_1525	NC_016804.1	1674674	1675981	D	hypothetical protein	1674674..1675981	Mycobacterium bovis BCG str. Mexico	11809808
YP_005170990.1	CDS	BCGMEX_1526c	NC_016804.1	1676560	1677318	R	hypothetical protein	complement(1676560..1677318)	Mycobacterium bovis BCG str. Mexico	11809809
YP_005170991.1	CDS	mutA	NC_016804.1	1677509	1679356	D	putative methylmalonyl-CoA mutase small subunit	1677509..1679356	Mycobacterium bovis BCG str. Mexico	11809810
YP_005170992.1	CDS	mutB	NC_016804.1	1679357	1681609	D	methylmalonyl-CoA mutase	1679357..1681609	Mycobacterium bovis BCG str. Mexico	11809811
YP_005170993.1	CDS	BCGMEX_1529	NC_016804.1	1681623	1681925	D	hypothetical protein	1681623..1681925	Mycobacterium bovis BCG str. Mexico	11809812
YP_005170994.1	CDS	BCGMEX_1530	NC_016804.1	1681922	1682239	D	hypothetical protein	1681922..1682239	Mycobacterium bovis BCG str. Mexico	11809813
YP_005170995.1	CDS	BCGMEX_1531	NC_016804.1	1682236	1683240	D	arginine/ornithine transport system ATPase	1682236..1683240	Mycobacterium bovis BCG str. Mexico	11809814
YP_005170996.1	CDS	lipL	NC_016804.1	1683293	1684582	D	putative esterase	1683293..1684582	Mycobacterium bovis BCG str. Mexico	11809815
YP_005170997.1	CDS	BCGMEX_1533c	NC_016804.1	1684655	1685272	R	Differs from Rv1498c by 1aa, H191R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative methyltransferase	complement(1684655..1685272)	Mycobacterium bovis BCG str. Mexico	11809816
YP_005170998.1	CDS	BCGMEX_1534c	NC_016804.1	1685486	1685677	R	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a single base transition at the 5' start leads to a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (63 aa versus 70 aa); hypothetical protein	complement(1685486..1685677)	Mycobacterium bovis BCG str. Mexico	11809817
YP_005170999.1	CDS	BCGMEX_1535	NC_016804.1	1685759	1686157	D	hypothetical protein	1685759..1686157	Mycobacterium bovis BCG str. Mexico	11809818
YP_005171000.1	CDS	BCGMEX_1536	NC_016804.1	1686202	1687230	D	Differs from Rv1500 and Mb1538 by 1aa, E45D in BCG Pasteur, BCG Tokyo and BCG Mexico; putative glycosyl transferase	1686202..1687230	Mycobacterium bovis BCG str. Mexico	11809819
YP_005171001.1	CDS	BCGMEX_1537	NC_016804.1	1687242	1688063	D	hypothetical protein	1687242..1688063	Mycobacterium bovis BCG str. Mexico	11809820
YP_005171002.1	CDS	BCGMEX_1538	NC_016804.1	1688276	1689175	D	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium tuberculosis strain H37Rv, Rv1502 exists as a single gene. In Mycobacterium bovis, a frameshift due to a single base deletion, splits Rv1502 into 2 parts, Mb1540 and Mb1541. Differs from Rv1502 by 1aa, C213Y in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1688276..1689175	Mycobacterium bovis BCG str. Mexico	11809821
YP_005171003.1	CDS	BCGMEX_1539c	NC_016804.1	1689348	1690496	R	In Mycobacterium tuberculosis strain H37Rv, Rv1503c and Rv1504c exist as 2 genes. In Mycobacterium bovis BCG Pasteur, BCG Tokyo,BCG Mexico, and Mycobacterium bovis, a single base transversion leads to a single product. Differs from Rv1503c by 1aa, K316E in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; TDP-4-oxo-6-deoxy-D-glucose transaminase	complement(1689348..1690496)	Mycobacterium bovis BCG str. Mexico	11809822
YP_005171004.1	CDS	BCGMEX_1540c	NC_016804.1	1690633	1691298	R	In Mycobacterium tuberculosis strain H37Rv, Rv1503c and Rv1504c exist as 2 genes. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium bovis, a single base transversion leads to a single product. Differs from Rv1503c by 1aa, K316E in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1690633..1691298)	Mycobacterium bovis BCG str. Mexico	11809823
YP_005171005.1	CDS	BCGMEX_1541	NC_016804.1	1691491	1692255	D	Differs from Rv1517 by 1aa, F188L in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1691491..1692255	Mycobacterium bovis BCG str. Mexico	11809824
YP_005171006.1	CDS	BCGMEX_1542	NC_016804.1	1692264	1693223	D	Differs from Rv1518 by 2aa, R266S, L317M in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1692264..1693223	Mycobacterium bovis BCG str. Mexico	11809825
YP_005171007.1	CDS	BCGMEX_1543	NC_016804.1	1693353	1693622	D	hypothetical protein	1693353..1693622	Mycobacterium bovis BCG str. Mexico	11809826
YP_005171008.1	CDS	BCGMEX_1544	NC_016804.1	1693648	1694688	D	putative sugar transferase	1693648..1694688	Mycobacterium bovis BCG str. Mexico	11809827
YP_005171009.1	CDS	fadD25	NC_016804.1	1694922	1696673	D	Differs from Rv1521 by 1aa, I74S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; acyl-CoA synthetase	1694922..1696673	Mycobacterium bovis BCG str. Mexico	11809828
YP_005171010.1	CDS	mmpL12	NC_016804.1	1696909	1700232	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium bovis, a single base transversion creating a stop codon, leads to a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (1107 aa versus 1146 aa). Differs from Rv1522c (1146 aa) by 1aa, P381S, and from Mb1549c, (1107 aa) by 2aa, T204A, S947N in BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane transport protein	complement(1696909..1700232)	Mycobacterium bovis BCG str. Mexico	11809829
YP_005171011.1	CDS	BCGMEX_1547	NC_016804.1	1700273	1701316	D	putative methyltransferase	1700273..1701316	Mycobacterium bovis BCG str. Mexico	11809830
YP_005171012.1	CDS	BCGMEX_1548	NC_016804.1	1701346	1702590	D	glycosyltransferase	1701346..1702590	Mycobacterium bovis BCG str. Mexico	11809831
YP_005171013.1	CDS	wbbL2	NC_016804.1	1702637	1703422	D	putative rhamnosyl transferase	1702637..1703422	Mycobacterium bovis BCG str. Mexico	11809832
YP_005171014.1	CDS	BCGMEX_1550c	NC_016804.1	1703400	1704680	R	glycosyltransferase	complement(1703400..1704680)	Mycobacterium bovis BCG str. Mexico	11809833
YP_005171015.1	CDS	pks5	NC_016804.1	1704703	1711029	R	Differs from Rv1527c by 2aa, T532P, L1439F in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative polyketide synthase	complement(1704703..1711029)	Mycobacterium bovis BCG str. Mexico	11809834
YP_005171016.1	CDS	papA4	NC_016804.1	1711573	1712070	R	putative polyketide synthase associated protein	complement(1711573..1712070)	Mycobacterium bovis BCG str. Mexico	11809835
YP_005171017.1	CDS	fadD24	NC_016804.1	1712122	1713876	D	Differs from Rv1529 and Mb1556 by 1aa, G289D in BCG Pasteur, BCG Tokyo and BCG Mexico; acyl-CoA synthetase	1712122..1713876	Mycobacterium bovis BCG str. Mexico	11809836
YP_005171018.1	CDS	adh	NC_016804.1	1713993	1715096	D	Differs from Rv1530 and Mb1557 by 1aa, L330P in BCG Pasteur, BCG Tokyo and BCG Mexico; putative alcohol dehydrogenase	1713993..1715096	Mycobacterium bovis BCG str. Mexico	11809837
YP_005171019.1	CDS	BCGMEX_1555	NC_016804.1	1715093	1715659	D	hypothetical protein	1715093..1715659	Mycobacterium bovis BCG str. Mexico	11809838
YP_005171020.1	CDS	BCGMEX_1556c	NC_016804.1	1715736	1716170	R	hypothetical protein	complement(1715736..1716170)	Mycobacterium bovis BCG str. Mexico	11809839
YP_005171021.1	CDS	BCGMEX_1557	NC_016804.1	1716230	1717357	D	hypothetical protein	1716230..1717357	Mycobacterium bovis BCG str. Mexico	11809840
YP_005171022.1	CDS	BCGMEX_1558	NC_016804.1	1717354	1718031	D	putative transcriptional regulator	1717354..1718031	Mycobacterium bovis BCG str. Mexico	11809841
YP_005171023.1	CDS	BCGMEX_1559	NC_016804.1	1718596	1718832	D	hypothetical protein	1718596..1718832	Mycobacterium bovis BCG str. Mexico	11809842
YP_005171024.1	CDS	ileS	NC_016804.1	1719139	1722264	D	Differs from Rv1536 by 1aa, A926P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; isoleucyl-tRNA synthetase	1719139..1722264	Mycobacterium bovis BCG str. Mexico	11809843
YP_005171025.1	CDS	dinX	NC_016804.1	1722476	1723867	D	DNA polymerase IV	1722476..1723867	Mycobacterium bovis BCG str. Mexico	11809844
YP_005171026.1	CDS	ansA	NC_016804.1	1723832	1724812	R	L-asparaginase	complement(1723832..1724812)	Mycobacterium bovis BCG str. Mexico	11809845
YP_005171027.1	CDS	lspA	NC_016804.1	1724864	1725472	D	lipoprotein signal peptidase	1724864..1725472	Mycobacterium bovis BCG str. Mexico	11809846
YP_005171028.1	CDS	BCGMEX_1564	NC_016804.1	1725465	1726391	D	hypothetical protein	1725465..1726391	Mycobacterium bovis BCG str. Mexico	11809847
YP_005171029.1	CDS	lprI	NC_016804.1	1726398	1726991	R	putative lipoprotein	complement(1726398..1726991)	Mycobacterium bovis BCG str. Mexico	11809848
YP_005171030.1	CDS	glbN	NC_016804.1	1727046	1727456	R	putative hemoglobin	complement(1727046..1727456)	Mycobacterium bovis BCG str. Mexico	11809849
YP_005171031.1	CDS	BCGMEX_1567	NC_016804.1	1727684	1728709	D	putative fatty acyl-CoA reductase	1727684..1728709	Mycobacterium bovis BCG str. Mexico	11809850
YP_005171032.1	CDS	BCGMEX_1568	NC_016804.1	1728714	1728812	D	In Mycobacterium tuberculosis strain H37Rv, and Mycobacterium bovis, Rv1544 and Mb1571 exist as a single gene. In Mycobacterium bovis BCG Pasteur and BCG Mexico, two genes exist as a result of a 10 bp deletion that has occurred. In BCG Tokyo exists same as Rv1544 and Mb157; hypothetical protein	1728714..1728812	Mycobacterium bovis BCG str. Mexico	11809851
YP_005171033.1	CDS	BCGMEX_1569	NC_016804.1	1728812	1729507	D	In Mycobacterium tuberculosis strain H37Rv, and Mycobacterium bovis, Rv1544 and Mb1571 exist as a single gene. In Mycobacterium bovis BCG Pasteur and BCG Mexico, two genes exist as a result of a 10 bp deletion that has occurred. In BCG Tokyo exists same as Rv1544 and Mb1571.; putative ketoacyl reductase	1728812..1729507	Mycobacterium bovis BCG str. Mexico	11809852
YP_005171034.1	CDS	BCGMEX_1570	NC_016804.1	1729529	1729756	D	hypothetical protein	1729529..1729756	Mycobacterium bovis BCG str. Mexico	11809853
YP_005171035.1	CDS	BCGMEX_1571	NC_016804.1	1729805	1730236	D	hypothetical protein	1729805..1730236	Mycobacterium bovis BCG str. Mexico	11809854
YP_005171036.1	CDS	dnaE	NC_016804.1	1730304	1733858	D	DNA polymerase III subunit alpha	1730304..1733858	Mycobacterium bovis BCG str. Mexico	11809855
YP_005171037.1	CDS	PPE21	NC_016804.1	1733907	1735943	R	Differs from Rv1548c by 1aa, G258D, and from Mb1575c by 1aa, V68A in BCG Pasteur, BCG Tokyo and BCG Mexico; PPE family protein	complement(1733907..1735943)	Mycobacterium bovis BCG str. Mexico	11809856
YP_005171038.1	CDS	fadD11	NC_016804.1	1736100	1738043	D	In Mycobacterium tuberculosis strain H37Rv, Rv1549 and Rv1550 exist as 2 genes. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium bovis, two single base insertions lead to a single product. Differs from Rv1550 by 1aa, S362L in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; putative fatty acid CoA ligase	1736100..1738043	Mycobacterium bovis BCG str. Mexico	11809857
YP_005171039.1	CDS	plsB1	NC_016804.1	1738057	1739922	D	glycerol-3-phosphate acyltransferase	1738057..1739922	Mycobacterium bovis BCG str. Mexico	11809858
YP_005171040.1	CDS	frdA	NC_016804.1	1740292	1742043	D	Fumarate reductase flavoprotein subunit	1740292..1742043	Mycobacterium bovis BCG str. Mexico	11809859
YP_005171041.1	CDS	frdBC	NC_016804.1	1742046	1743176	D	In Mycobacterium tuberculosis strain H37Rv, Rv1553 and Rv1554 exist as 2 genes. In Mycobacterium bovis (Mb1579), a 4bp insertion leads to a single product and in Mycobacterium bovis BCG Pasteur and BCG Mexicoa 10 bp insertion leads to insertion of two additional Gly codons. In Mycobacterium bovis BCG Tokyo, a 9 bp insertion leads to insertion of three additional Gly codons. 16Gs in BCG Tokyo, 17Gs in BCG Pasteur and BCG Mexico.; putative fumarate reductase (iron-sulfur subunit) frdB and (membrane anchor subunit) frdC	1742046..1743176	Mycobacterium bovis BCG str. Mexico	11809860
YP_005171042.1	CDS	frdD	NC_016804.1	1743173	1743550	D	Fumarate reductase subunit D	1743173..1743550	Mycobacterium bovis BCG str. Mexico	11809861
YP_005171043.1	CDS	BCGMEX_1579	NC_016804.1	1743618	1744226	D	putative regulatory protein	1743618..1744226	Mycobacterium bovis BCG str. Mexico	11809862
YP_005171044.1	CDS	mmpS6	NC_016804.1	1744365	1744811	D	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium bovis, a 2153 bp insertion leads to a new protein with no Equivalent in Mycobacterium tuberculosis strain H37Rv. Belongs to the TbD1 region; hypothetical protein	1744365..1744811	Mycobacterium bovis BCG str. Mexico	11809863
YP_005171045.1	CDS	mmpL6	NC_016804.1	1744808	1747711	D	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium bovis, a 2153 bp insertion leads to a longer product compared to its homolog in Mycobacterium tuberculosis strain H37Rv. Belongs to the TbD1 region; putative transmembrane transport protein	1744808..1747711	Mycobacterium bovis BCG str. Mexico	11809864
YP_005171046.1	CDS	BCGMEX_1582	NC_016804.1	1747721	1748167	D	hypothetical protein	1747721..1748167	Mycobacterium bovis BCG str. Mexico	11809865
YP_005171047.1	CDS	ilvA	NC_016804.1	1748202	1749491	D	Threonine dehydratase	1748202..1749491	Mycobacterium bovis BCG str. Mexico	11809866
YP_005171048.1	CDS	BCGMEX_1584	NC_016804.1	1749529	1749747	D	hypothetical protein	1749529..1749747	Mycobacterium bovis BCG str. Mexico	11809867
YP_005171049.1	CDS	BCGMEX_1585	NC_016804.1	1749753	1750157	D	hypothetical protein	1749753..1750157	Mycobacterium bovis BCG str. Mexico	11809868
YP_005171050.1	CDS	treZb	NC_016804.1	1750174	1750734	R	Malto-oligosyltrehalose trehalohydrolase	complement(1750174..1750734)	Mycobacterium bovis BCG str. Mexico	11809869
YP_005171051.1	CDS	treZa	NC_016804.1	1750731	1751915	R	In Mycobacterium tuberculosis strain H37Rv, and Mycobacterium bovis, treZa and treZb exist as a single gene, treZ. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, a single base deletion leads to frameshift and two genes, treZa and treZb; Malto-oligosyltrehalose trehalohydrolase	complement(1750731..1751915)	Mycobacterium bovis BCG str. Mexico	11809870
YP_005171052.1	CDS	treY	NC_016804.1	1751908	1754205	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and in Mycobacterium tuberculosis strain H37Rv, treY exists as a single gene. In Mycobacterium bovis, a large deletion of 806 bp, RD17, splits Rv1563c into two parts, treYa and treYb; Malto-oligosyltrehalose synthase	complement(1751908..1754205)	Mycobacterium bovis BCG str. Mexico	11809871
YP_005171053.1	CDS	treX	NC_016804.1	1754209	1756374	R	Maltooligosyltrehalose synthase	complement(1754209..1756374)	Mycobacterium bovis BCG str. Mexico	11809872
YP_005171054.1	CDS	BCGMEX_1590c	NC_016804.1	1756413	1758602	R	hypothetical protein	complement(1756413..1758602)	Mycobacterium bovis BCG str. Mexico	11809873
YP_005171055.1	CDS	BCGMEX_1591c	NC_016804.1	1758701	1759393	R	putative inv protein	complement(1758701..1759393)	Mycobacterium bovis BCG str. Mexico	11809874
YP_005171056.1	CDS	BCGMEX_1592c	NC_016804.1	1759633	1759917	R	hypothetical protein	complement(1759633..1759917)	Mycobacterium bovis BCG str. Mexico	11809875
YP_005171057.1	CDS	bioA	NC_016804.1	1760165	1761478	D	Adenosylmethionine-8-amino-7-oxononanoate transaminase	1760165..1761478	Mycobacterium bovis BCG str. Mexico	11809876
YP_005171058.1	CDS	bioF1	NC_016804.1	1761475	1762635	D	8-amino-7-oxononanoate synthase	1761475..1762635	Mycobacterium bovis BCG str. Mexico	11809877
YP_005171059.1	CDS	bioD	NC_016804.1	1762632	1763312	D	Differs from Rv1570 by 2aa, V134A, T191M, and from Mb1597 by 1aa, V134A in BCG Pasteur, BCG Tokyo and BCG Mexico; dethiobiotin synthetase	1762632..1763312	Mycobacterium bovis BCG str. Mexico	11809878
YP_005171060.1	CDS	BCGMEX_1596	NC_016804.1	1763312	1763821	D	hypothetical protein	1763312..1763821	Mycobacterium bovis BCG str. Mexico	11809879
YP_005171061.1	CDS	BCGMEX_1597c	NC_016804.1	1763967	1764923	R	In Mycobacterium tuberculosis strain H37Rv and Mycobacterium bovis, Rv1587c possibly exists as a pseudogene that has been disrupted when the phage entered. In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, the prophage is absent and the C-terminal part of protein differs accordingly; REP13E12 repeat protein	complement(1763967..1764923)	Mycobacterium bovis BCG str. Mexico	11809880
YP_005171062.1	CDS	BCGMEX_1598c	NC_016804.1	1764694	1765362	R	REP13E12 repeat protein	complement(1764694..1765362)	Mycobacterium bovis BCG str. Mexico	11809881
YP_005171063.1	CDS	bioB	NC_016804.1	1765810	1766859	D	biotin synthase	1765810..1766859	Mycobacterium bovis BCG str. Mexico	11809882
YP_005171064.1	CDS	BCGMEX_1600	NC_016804.1	1766860	1767099	D	hypothetical protein	1766860..1767099	Mycobacterium bovis BCG str. Mexico	11809883
YP_005171065.1	CDS	BCGMEX_1601	NC_016804.1	1767096	1767761	D	putative transmembrane protein	1767096..1767761	Mycobacterium bovis BCG str. Mexico	11809884
YP_005171066.1	CDS	BCGMEX_1602c	NC_016804.1	1767926	1769266	R	Differs from Rv1592c by 1aa, V322I in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1767926..1769266)	Mycobacterium bovis BCG str. Mexico	11809885
YP_005171067.1	CDS	BCGMEX_1603c	NC_016804.1	1769523	1770233	R	hypothetical protein	complement(1769523..1770233)	Mycobacterium bovis BCG str. Mexico	11809886
YP_005171068.1	CDS	nadA	NC_016804.1	1770282	1771331	D	quinolinate synthetase	1770282..1771331	Mycobacterium bovis BCG str. Mexico	11809887
YP_005171069.1	CDS	nadB	NC_016804.1	1771331	1772914	D	L-aspartate oxidase	1771331..1772914	Mycobacterium bovis BCG str. Mexico	11809888
YP_005171070.1	CDS	nadC	NC_016804.1	1772914	1773771	D	Differs from Rv1596 by 1aa, D64N in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; nicotinate-nucleotide pyrophosphatase	1772914..1773771	Mycobacterium bovis BCG str. Mexico	11809889
YP_005171071.1	CDS	BCGMEX_1607	NC_016804.1	1773820	1774578	D	Differs from Rv1597 by 2aa, D21G, M93L, and from Mb1623 by 1aa, M93L in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1773820..1774578	Mycobacterium bovis BCG str. Mexico	11809890
YP_005171072.1	CDS	BCGMEX_1608c	NC_016804.1	1774599	1775009	R	hypothetical protein	complement(1774599..1775009)	Mycobacterium bovis BCG str. Mexico	11809891
YP_005171073.1	CDS	hisD	NC_016804.1	1775109	1776425	D	histidinol dehydrogenase	1775109..1776425	Mycobacterium bovis BCG str. Mexico	11809892
YP_005171074.1	CDS	hisC1	NC_016804.1	1776422	1777564	D	histidinol-phosphate aminotransferase	1776422..1777564	Mycobacterium bovis BCG str. Mexico	11809893
YP_005171075.1	CDS	hisB	NC_016804.1	1777561	1778193	D	imidazoleglycerol-phosphate dehydratase	1777561..1778193	Mycobacterium bovis BCG str. Mexico	11809894
YP_005171076.1	CDS	hisH	NC_016804.1	1778190	1778810	D	Differs from Rv1602 by 1aa, N201S in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; imidazole glycerol phosphate synthase	1778190..1778810	Mycobacterium bovis BCG str. Mexico	11809895
YP_005171077.1	CDS	hisA	NC_016804.1	1778820	1779557	D	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase	1778820..1779557	Mycobacterium bovis BCG str. Mexico	11809896
YP_005171078.1	CDS	impA	NC_016804.1	1779565	1780377	D	Differs from Rv1604 by 3aa, H93Y, Q124P, L251P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative inositol-monophosphatase	1779565..1780377	Mycobacterium bovis BCG str. Mexico	11809897
YP_005171079.1	CDS	hisF	NC_016804.1	1780379	1781182	D	Differs from Rv1605 by 1aa, L121P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; imidazole glycerol phosphate synthase	1780379..1781182	Mycobacterium bovis BCG str. Mexico	11809898
YP_005171080.1	CDS	hisI	NC_016804.1	1781179	1781526	D	phosphoribosyl-AMP cyclohydrolase	1781179..1781526	Mycobacterium bovis BCG str. Mexico	11809899
YP_005171081.1	CDS	chaA	NC_016804.1	1781707	1782789	D	putative ionic transporter integral membrane protein	1781707..1782789	Mycobacterium bovis BCG str. Mexico	11809900
YP_005171082.1	CDS	bcpB	NC_016804.1	1782824	1783288	R	putative peroxidoxin	complement(1782824..1783288)	Mycobacterium bovis BCG str. Mexico	11809901
YP_005171083.1	CDS	trpE	NC_016804.1	1783429	1784979	D	anthranilate synthase	1783429..1784979	Mycobacterium bovis BCG str. Mexico	11809902
YP_005171084.1	CDS	BCGMEX_1620	NC_016804.1	1785017	1785676	D	hypothetical protein	1785017..1785676	Mycobacterium bovis BCG str. Mexico	11809903
YP_005171085.1	CDS	trpC	NC_016804.1	1785766	1786584	D	indole-3-glycerol phosphate synthase	1785766..1786584	Mycobacterium bovis BCG str. Mexico	11809904
YP_005171086.1	CDS	trpB	NC_016804.1	1786653	1787885	D	tryptophan synthase subunit beta	1786653..1787885	Mycobacterium bovis BCG str. Mexico	11809905
YP_005171087.1	CDS	trpA	NC_016804.1	1787885	1788697	D	tryptophan synthase subunit alpha	1787885..1788697	Mycobacterium bovis BCG str. Mexico	11809906
YP_005171088.1	CDS	lgt	NC_016804.1	1788697	1790103	D	prolipoprotein diacylglyceryl transferase	1788697..1790103	Mycobacterium bovis BCG str. Mexico	11809907
YP_005171089.1	CDS	BCGMEX_1625	NC_016804.1	1790779	1791219	D	hypothetical protein	1790779..1791219	Mycobacterium bovis BCG str. Mexico	11809908
YP_005171090.1	CDS	BCGMEX_1626	NC_016804.1	1791209	1791607	D	hypothetical protein	1791209..1791607	Mycobacterium bovis BCG str. Mexico	11809909
YP_005171091.1	CDS	pykA	NC_016804.1	1791715	1793133	D	Differs from Mb1643 by 1aa, E220D in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Pyruvate kinase	1791715..1793133	Mycobacterium bovis BCG str. Mexico	11809910
YP_005171092.1	CDS	tesB1	NC_016804.1	1793141	1794043	D	Differs from Rv1618 by 1aa, L121H in Mycobacterium tuberculosis CDC1331, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; acyl-CoA thioesterase II	1793141..1794043	Mycobacterium bovis BCG str. Mexico	11809911
YP_005171093.1	CDS	BCGMEX_1629	NC_016804.1	1794101	1795555	D	hypothetical protein	1794101..1795555	Mycobacterium bovis BCG str. Mexico	11809912
YP_005171094.1	CDS	cydC	NC_016804.1	1795489	1797219	R	Component linked with the assembly of cytochrome' transport transmembrane ATP-binding protein; putative ABC transporter	complement(1795489..1797219)	Mycobacterium bovis BCG str. Mexico	11809913
YP_005171095.1	CDS	cydD	NC_016804.1	1797216	1798799	R	Component linked with the assembly of cytochrome' transport transmembrane ATP-binding protein; putative ABC transporter	complement(1797216..1798799)	Mycobacterium bovis BCG str. Mexico	11809914
YP_005171096.1	CDS	cydB	NC_016804.1	1798886	1799926	R	putative integral membrane cytochrome d ubiquinol oxidase subunit II	complement(1798886..1799926)	Mycobacterium bovis BCG str. Mexico	11809915
YP_005171097.1	CDS	cydA	NC_016804.1	1799956	1801413	R	putative integral membrane cytochrome d ubiquinol oxidase subunit I	complement(1799956..1801413)	Mycobacterium bovis BCG str. Mexico	11809916
YP_005171098.1	CDS	BCGMEX_1634c	NC_016804.1	1801524	1802111	R	Differs from Rv1624c by 1aa, A178T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1801524..1802111)	Mycobacterium bovis BCG str. Mexico	11809917
YP_005171099.1	CDS	cya	NC_016804.1	1802140	1803396	R	membrane-anchored Adenylyl cyclase	complement(1802140..1803396)	Mycobacterium bovis BCG str. Mexico	11809918
YP_005171100.1	CDS	BCGMEX_1636	NC_016804.1	1803706	1804323	D	putative two-component system transcriptional regulator	1803706..1804323	Mycobacterium bovis BCG str. Mexico	11809920
YP_005171101.1	CDS	BCGMEX_1637c	NC_016804.1	1804391	1805599	R	Lipid-transfer protein	complement(1804391..1805599)	Mycobacterium bovis BCG str. Mexico	11809921
YP_005171102.1	CDS	BCGMEX_1638c	NC_016804.1	1805596	1806087	R	Differs from Rv1628c and Mb1654c by 1aa, V93A in BCG Pasteur,  BCG Tokyo and BCG Mexico; hypothetical protein	complement(1805596..1806087)	Mycobacterium bovis BCG str. Mexico	11809922
YP_005171103.1	CDS	polA	NC_016804.1	1806191	1808905	D	DNA polymerase I	1806191..1808905	Mycobacterium bovis BCG str. Mexico	11809923
YP_005171104.1	CDS	rpsA	NC_016804.1	1809068	1810513	D	Differs from Rv1630 by 1aa, T440A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; 30S ribosomal protein S1	1809068..1810513	Mycobacterium bovis BCG str. Mexico	11809924
YP_005171105.1	CDS	coaE	NC_016804.1	1810539	1811762	D	dephospho-CoA kinase	1810539..1811762	Mycobacterium bovis BCG str. Mexico	11809925
YP_005171106.1	CDS	BCGMEX_1642c	NC_016804.1	1811913	1812356	R	hypothetical protein	complement(1811913..1812356)	Mycobacterium bovis BCG str. Mexico	11809926
YP_005171107.1	CDS	uvrB	NC_016804.1	1812601	1814697	D	Differs from Rv1633 and Mb1659 by 1aa, S405T in BCG Pasteur, BCG Tokyo and BCG Mexico; excinuclease ABC subunit B	1812601..1814697	Mycobacterium bovis BCG str. Mexico	11809927
YP_005171108.1	CDS	BCGMEX_1644	NC_016804.1	1814694	1816109	D	Differs from Rv1634 by 2aa, Q13E, R198G, and from Mb1660 by 1aa, Q13E in BCG Pasteur, BCG Tokyo and BCG Mexico; putative drug efflux membrane protein	1814694..1816109	Mycobacterium bovis BCG str. Mexico	11809928
YP_005171109.1	CDS	BCGMEX_1645c	NC_016804.1	1816098	1817768	R	hypothetical protein	complement(1816098..1817768)	Mycobacterium bovis BCG str. Mexico	11809929
YP_005171110.1	CDS	BCGMEX_1646	NC_016804.1	1817977	1818417	D	hypothetical protein	1817977..1818417	Mycobacterium bovis BCG str. Mexico	11809930
YP_005171111.1	CDS	BCGMEX_1647c	NC_016804.1	1818424	1819218	R	hypothetical protein	complement(1818424..1819218)	Mycobacterium bovis BCG str. Mexico	11809931
YP_005171112.1	CDS	uvrA	NC_016804.1	1819267	1822185	D	excinuclease ABC subunit A	1819267..1822185	Mycobacterium bovis BCG str. Mexico	11809932
YP_005171113.1	CDS	BCGMEX_1649c	NC_016804.1	1822242	1822499	R	hypothetical protein	complement(1822242..1822499)	Mycobacterium bovis BCG str. Mexico	11809933
YP_005171114.1	CDS	BCGMEX_1650c	NC_016804.1	1822515	1823984	R	hypothetical protein	complement(1822515..1823984)	Mycobacterium bovis BCG str. Mexico	11809934
YP_005171115.1	CDS	lysS	NC_016804.1	1824043	1827561	R	Differs from Rv1640c by 2aa, E769D, G944D, and from Mb1667c by 1aa, E769D in BCG Pasteur, BCG Tokyo and BCG Mexico; lysyl-tRNA synthetase	complement(1824043..1827561)	Mycobacterium bovis BCG str. Mexico	11809935
YP_005171116.1	CDS	infC	NC_016804.1	1827798	1828403	D	Differs from Rv1641 and Mb1668 by 1aa, S34A in BCG Pasteur, BCG Tokyo and BCG Mexico; putative initiation factor IF-3	1827798..1828403	Mycobacterium bovis BCG str. Mexico	11809936
YP_005171117.1	CDS	rpmI	NC_016804.1	1828453	1828647	D	50S ribosomal protein L35	1828453..1828647	Mycobacterium bovis BCG str. Mexico	11809937
YP_005171118.1	CDS	rplT	NC_016804.1	1828709	1829098	D	50S ribosomal protein L20	1828709..1829098	Mycobacterium bovis BCG str. Mexico	11809938
YP_005171119.1	CDS	tsnR	NC_016804.1	1829131	1829913	D	Differs from Rv1644 by 1aa, P232L in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative 23S rRNA methyltransferase	1829131..1829913	Mycobacterium bovis BCG str. Mexico	11809939
YP_005171120.1	CDS	BCGMEX_1656c	NC_016804.1	1829924	1830979	R	hypothetical protein	complement(1829924..1830979)	Mycobacterium bovis BCG str. Mexico	11809940
YP_005171121.1	CDS	PE17	NC_016804.1	1831289	1832221	D	PE family protein	1831289..1832221	Mycobacterium bovis BCG str. Mexico	11809941
YP_005171122.1	CDS	BCGMEX_1658	NC_016804.1	1832299	1833249	D	Differs from Rv1647 by 1aa, P2A in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1832299..1833249	Mycobacterium bovis BCG str. Mexico	11809942
YP_005171123.1	CDS	BCGMEX_1659	NC_016804.1	1833256	1834062	D	putative transmembrane protein	1833256..1834062	Mycobacterium bovis BCG str. Mexico	11809943
YP_005171124.1	CDS	BCGMEX_1660	NC_016804.1	1834258	1835283	D	Differs from Rv1649 by 1aa, D276A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; phenylalanyl-tRNA synthetase, subunit alpha	1834258..1835283	Mycobacterium bovis BCG str. Mexico	11809944
YP_005171125.1	CDS	pheT	NC_016804.1	1835283	1837778	D	Differs from Rv1650 by 1aa, V212A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; phenylalanyl-tRNA synthetase subunit beta chain	1835283..1837778	Mycobacterium bovis BCG str. Mexico	11809945
YP_005171126.1	CDS	PE_PGRS30	NC_016804.1	1837872	1840928	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium bovis, an in-frame insertion of 21 bp leads to a longer product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (1018 aa versus 1011 aa). Differs from Rv1651c by insertion of 7aa at position 152 and by 1aa, V179A in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; PE-PGRS family protein	complement(1837872..1840928)	Mycobacterium bovis BCG str. Mexico	11809946
YP_005171127.1	CDS	BCGMEX_1663	NC_016804.1	1841122	1842180	D	N-acetyl-gamma-glutamyl-phosphate reductase	1841122..1842180	Mycobacterium bovis BCG str. Mexico	11809947
YP_005171128.1	CDS	argJ	NC_016804.1	1842177	1843391	D	Ornithine acetyltransferase/N-acetylglutamate synthase protein	1842177..1843391	Mycobacterium bovis BCG str. Mexico	11809948
YP_005171129.1	CDS	argB	NC_016804.1	1843388	1844272	D	acetylglutamate kinase	1843388..1844272	Mycobacterium bovis BCG str. Mexico	11809949
YP_005171130.1	CDS	argD	NC_016804.1	1844269	1845471	D	acetylornithine aminotransferase	1844269..1845471	Mycobacterium bovis BCG str. Mexico	11809950
YP_005171131.1	CDS	argF	NC_016804.1	1845468	1846391	D	ornithine carbamoyltransferase	1845468..1846391	Mycobacterium bovis BCG str. Mexico	11809951
YP_005171132.1	CDS	argR	NC_016804.1	1846388	1846900	D	Arginine repressor	1846388..1846900	Mycobacterium bovis BCG str. Mexico	11809952
YP_005171133.1	CDS	argG	NC_016804.1	1846909	1848105	D	argininosuccinate synthase	1846909..1848105	Mycobacterium bovis BCG str. Mexico	11809953
YP_005171134.1	CDS	argH	NC_016804.1	1848185	1849597	D	argininosuccinate lyase	1848185..1849597	Mycobacterium bovis BCG str. Mexico	11809954
YP_005171135.1	CDS	pks10	NC_016804.1	1849706	1850767	D	putative chalcone synthase	1849706..1850767	Mycobacterium bovis BCG str. Mexico	11809955
YP_005171136.1	CDS	pks7	NC_016804.1	1850850	1857230	D	Differs from Rv1661 by 2aa, W670R, P1176S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative polyketide synthase	1850850..1857230	Mycobacterium bovis BCG str. Mexico	11809956
YP_005171137.1	CDS	pks8	NC_016804.1	1857250	1862055	D	Differs from Rv1662 by 6aa, Y78D, deletion of V692, V807A, G1260R, T1356A, C1468Y, and from Mb1690 by 1aa, deletion of V692 in BCG Pasteur,  BCG Tokyo and BCG Mexico; putative polyketide synthase	1857250..1862055	Mycobacterium bovis BCG str. Mexico	11809957
YP_005171138.1	CDS	pks17	NC_016804.1	1862055	1863563	D	polyketide synthase	1862055..1863563	Mycobacterium bovis BCG str. Mexico	11809958
YP_005171139.1	CDS	pks9	NC_016804.1	1863569	1866622	D	Differs from Rv1664 by 2aa, T36A, P350A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative polyketide synthase	1863569..1866622	Mycobacterium bovis BCG str. Mexico	11809959
YP_005171140.1	CDS	pks11	NC_016804.1	1866769	1867830	D	chalcone synthase	1866769..1867830	Mycobacterium bovis BCG str. Mexico	11809960
YP_005171141.1	CDS	cyp139	NC_016804.1	1867813	1869105	R	putative cytochrome P450 139	complement(1867813..1869105)	Mycobacterium bovis BCG str. Mexico	11809961
YP_005171142.1	CDS	BCGMEX_1678c	NC_016804.1	1869120	1870895	R	In Mycobacterium tuberculosis strain H37Rv, Rv1668c and Rv1667c exist as 2 genes with a small overlap between them. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 10 bp insertion leads to a single product; Macrolide ABC transporter ATP-binding protein	complement(1869120..1870895)	Mycobacterium bovis BCG str. Mexico	11809962
YP_005171143.1	CDS	BCGMEX_1679	NC_016804.1	1871278	1871640	D	hypothetical protein	1871278..1871640	Mycobacterium bovis BCG str. Mexico	11809963
YP_005171144.1	CDS	BCGMEX_1680	NC_016804.1	1871673	1872020	D	hypothetical protein	1871673..1872020	Mycobacterium bovis BCG str. Mexico	11809964
YP_005171145.1	CDS	BCGMEX_1681	NC_016804.1	1872028	1872420	D	hypothetical protein	1872028..1872420	Mycobacterium bovis BCG str. Mexico	11809965
YP_005171146.1	CDS	BCGMEX_1682c	NC_016804.1	1872429	1873760	R	putative integral membrane transport protein	complement(1872429..1873760)	Mycobacterium bovis BCG str. Mexico	11809966
YP_005171147.1	CDS	BCGMEX_1683c	NC_016804.1	1873853	1874785	R	hypothetical protein	complement(1873853..1874785)	Mycobacterium bovis BCG str. Mexico	11809967
YP_005171148.1	CDS	BCGMEX_1684c	NC_016804.1	1874813	1875469	R	putative transcriptional regulatory protein	complement(1874813..1875469)	Mycobacterium bovis BCG str. Mexico	11809968
YP_005171149.1	CDS	BCGMEX_1685c	NC_016804.1	1875794	1876528	R	Differs from Rv1675c by 1aa, A59V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transcriptional regulatory protein	complement(1875794..1876528)	Mycobacterium bovis BCG str. Mexico	11809969
YP_005171150.1	CDS	BCGMEX_1686	NC_016804.1	1876600	1877304	D	hypothetical protein	1876600..1877304	Mycobacterium bovis BCG str. Mexico	11809970
YP_005171151.1	CDS	dsbF	NC_016804.1	1877301	1877849	D	putative lipoprotein	1877301..1877849	Mycobacterium bovis BCG str. Mexico	11809971
YP_005171152.1	CDS	BCGMEX_1688	NC_016804.1	1877950	1878852	D	putative integral membrane protein	1877950..1878852	Mycobacterium bovis BCG str. Mexico	11809972
YP_005171153.1	CDS	fadE16	NC_016804.1	1878852	1879973	D	putative Acyl-CoA dehydrogenase	1878852..1879973	Mycobacterium bovis BCG str. Mexico	11809973
YP_005171154.1	CDS	BCGMEX_1690	NC_016804.1	1879982	1880806	D	Differs from Mb1707 by 1aa, A230G in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1879982..1880806	Mycobacterium bovis BCG str. Mexico	11809974
YP_005171155.1	CDS	moeX	NC_016804.1	1880803	1881795	D	putative molybdopterin biosynthesis protein	1880803..1881795	Mycobacterium bovis BCG str. Mexico	11809975
YP_005171156.1	CDS	BCGMEX_1692	NC_016804.1	1881956	1882873	D	putative coiled-coil structural protein	1881956..1882873	Mycobacterium bovis BCG str. Mexico	11809976
YP_005171157.1	CDS	BCGMEX_1693	NC_016804.1	1883091	1886090	D	putative long-chain acyl-CoA synthase	1883091..1886090	Mycobacterium bovis BCG str. Mexico	11809977
YP_005171158.1	CDS	BCGMEX_1694	NC_016804.1	1886083	1886307	D	hypothetical protein	1886083..1886307	Mycobacterium bovis BCG str. Mexico	11809978
YP_005171159.1	CDS	BCGMEX_1695c	NC_016804.1	1886273	1886896	R	hypothetical protein	complement(1886273..1886896)	Mycobacterium bovis BCG str. Mexico	11809979
YP_005171160.1	CDS	BCGMEX_1696c	NC_016804.1	1886898	1887578	R	Differs from Rv1686c by 1aa, F20V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative integral membrane protein ABC transporter	complement(1886898..1887578)	Mycobacterium bovis BCG str. Mexico	11809980
YP_005171161.1	CDS	BCGMEX_1697c	NC_016804.1	1887650	1888417	R	putative ATP-binding protein ABC transporter	complement(1887650..1888417)	Mycobacterium bovis BCG str. Mexico	11809981
YP_005171162.1	CDS	BCGMEX_1698	NC_016804.1	1888476	1889087	D	3-methyladenine DNA glycosylase	1888476..1889087	Mycobacterium bovis BCG str. Mexico	11809982
YP_005171163.1	CDS	tyrS	NC_016804.1	1889099	1890373	D	tyrosyl-tRNA synthetase	1889099..1890373	Mycobacterium bovis BCG str. Mexico	11809983
YP_005171164.1	CDS	lprJ	NC_016804.1	1891024	1891407	D	In Mycobacterium bovis, a 2 bp insertion at the 5' end, leads to a longer product compared to its homolog in Mycobacterium tuberculosis strain H37Rv and in Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico (139 aa versus 127 aa); putative lipoprotein	1891024..1891407	Mycobacterium bovis BCG str. Mexico	11809984
YP_005171165.1	CDS	BCGMEX_1701	NC_016804.1	1891446	1892198	D	hypothetical protein	1891446..1892198	Mycobacterium bovis BCG str. Mexico	11809985
YP_005171166.1	CDS	BCGMEX_1702	NC_016804.1	1892195	1893256	D	putative phosphatase	1892195..1893256	Mycobacterium bovis BCG str. Mexico	11809986
YP_005171167.1	CDS	BCGMEX_1703	NC_016804.1	1893253	1893429	D	hypothetical protein	1893253..1893429	Mycobacterium bovis BCG str. Mexico	11809987
YP_005171168.1	CDS	tlyA	NC_016804.1	1893437	1894243	D	cytotoxin/hemolysin-like protein	1893437..1894243	Mycobacterium bovis BCG str. Mexico	11809988
YP_005171169.1	CDS	ppnK	NC_016804.1	1894243	1895166	D	inorganic polyphosphate/ATP-NAD kinase	1894243..1895166	Mycobacterium bovis BCG str. Mexico	11809989
YP_005171170.1	CDS	recN	NC_016804.1	1895180	1896943	D	putative DNA repair protein	1895180..1896943	Mycobacterium bovis BCG str. Mexico	11809990
YP_005171171.1	CDS	BCGMEX_1707	NC_016804.1	1897039	1898220	D	hypothetical protein	1897039..1898220	Mycobacterium bovis BCG str. Mexico	11809991
YP_005171172.1	CDS	BCGMEX_1708	NC_016804.1	1898242	1899186	D	hypothetical protein	1898242..1899186	Mycobacterium bovis BCG str. Mexico	11809992
YP_005171173.1	CDS	pyrG	NC_016804.1	1899326	1901086	D	CTP synthase	1899326..1901086	Mycobacterium bovis BCG str. Mexico	11809993
YP_005171174.1	CDS	BCGMEX_1710	NC_016804.1	1901079	1901702	D	Differs from Mb1726 by 2aa, F43L, A202T in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1901079..1901702	Mycobacterium bovis BCG str. Mexico	11809994
YP_005171175.1	CDS	xerD	NC_016804.1	1901699	1902634	D	Site-specific tyrosine recombinase	1901699..1902634	Mycobacterium bovis BCG str. Mexico	11809995
YP_005171176.1	CDS	BCGMEX_1712c	NC_016804.1	1902708	1904072	R	hypothetical protein	complement(1902708..1904072)	Mycobacterium bovis BCG str. Mexico	11809996
YP_005171177.1	CDS	BCGMEX_1713c	NC_016804.1	1904627	1905217	R	Differs from Rv1703c and Mb1729c by 1aa, S48G in BCG Pasteur, BCG Tokyo and BCG Mexico; putative catechol-o-methyltransferase	complement(1904627..1905217)	Mycobacterium bovis BCG str. Mexico	11809997
YP_005171178.1	CDS	cycA	NC_016804.1	1905282	1906952	R	Differs from Rv1704c by 2aa, L93R, S122G, and from Mb1730c by 1aa, S122G in BCG Pasteur, BCG Tokyo and BCG Mexico; putative D-serine/alanine/glycine transporter protein	complement(1905282..1906952)	Mycobacterium bovis BCG str. Mexico	11809998
YP_005171179.1	CDS	PPE22	NC_016804.1	1906993	1908150	R	Differs from Rv1705c by 2aa, A2D, V313L, and from Mb1731c by 1aa, A2D in BCG Pasteur. Differs from Rv1705c by 1aa, V313L in BCG Tokyo and BCG Mexico; PPE family protein	complement(1906993..1908150)	Mycobacterium bovis BCG str. Mexico	11809999
YP_005171180.1	CDS	PPE23	NC_016804.1	1908190	1909374	R	PPE family protein	complement(1908190..1909374)	Mycobacterium bovis BCG str. Mexico	11810000
YP_005171181.1	CDS	BCGMEX_1717c	NC_016804.1	1909978	1910145	R	hypothetical protein	complement(1909978..1910145)	Mycobacterium bovis BCG str. Mexico	11810001
YP_005171182.1	CDS	BCGMEX_1718	NC_016804.1	1910378	1911838	D	Differs from Rv1707 by 1aa, Q438R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	1910378..1911838	Mycobacterium bovis BCG str. Mexico	11810002
YP_005171183.1	CDS	BCGMEX_1719	NC_016804.1	1911856	1912812	D	Differs from Rv1708 by 1a, a T56A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative initiation inhibitor protein	1911856..1912812	Mycobacterium bovis BCG str. Mexico	11810003
YP_005171184.1	CDS	BCGMEX_1720	NC_016804.1	1912809	1913645	D	hypothetical protein	1912809..1913645	Mycobacterium bovis BCG str. Mexico	11810004
YP_005171185.1	CDS	BCGMEX_1721	NC_016804.1	1913642	1914337	D	hypothetical protein	1913642..1914337	Mycobacterium bovis BCG str. Mexico	11810005
YP_005171186.1	CDS	BCGMEX_1722	NC_016804.1	1914334	1915098	D	hypothetical protein	1914334..1915098	Mycobacterium bovis BCG str. Mexico	11810006
YP_005171187.1	CDS	cmk	NC_016804.1	1915095	1915787	D	cytidylate kinase	1915095..1915787	Mycobacterium bovis BCG str. Mexico	11810007
YP_005171188.1	CDS	engA	NC_016804.1	1915784	1917175	D	GTP-binding protein	1915784..1917175	Mycobacterium bovis BCG str. Mexico	11810008
YP_005171189.1	CDS	BCGMEX_1725	NC_016804.1	1917349	1918161	D	putative oxidoreductase	1917349..1918161	Mycobacterium bovis BCG str. Mexico	11810009
YP_005171190.1	CDS	fadB3	NC_016804.1	1918155	1919069	D	In Mycobacterium tuberculosis strain H37Rv, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, Rv1715/fadB3 exists as a single gene. In Mycobacterium bovis, a single base transition splits fadB3 into 2 parts, fadB3a and fadB3b; putative 3-hydroxybutyryl-CoA dehydrogenase	1918155..1919069	Mycobacterium bovis BCG str. Mexico	11810010
YP_005171191.1	CDS	BCGMEX_1727	NC_016804.1	1919072	1919902	D	Differs from Rv1716 by 2aa, G178S, A276V in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1919072..1919902	Mycobacterium bovis BCG str. Mexico	11810011
YP_005171192.1	CDS	BCGMEX_1728	NC_016804.1	1919902	1920252	D	hypothetical protein	1919902..1920252	Mycobacterium bovis BCG str. Mexico	11810012
YP_005171193.1	CDS	BCGMEX_1729	NC_016804.1	1920305	1920928	D	In Mycobacterium tuberculosis strain H37Rv, exists as a single gene. In Mycobacterium bovis AF2122/97, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a single base deletion leads to a shorter product with a different COOH terminus; hypothetical protein	1920305..1920928	Mycobacterium bovis BCG str. Mexico	11810013
YP_005171194.1	CDS	BCGMEX_1730	NC_016804.1	1921136	1921915	D	putative transcriptional regulatory protein	1921136..1921915	Mycobacterium bovis BCG str. Mexico	11810014
YP_005171195.1	CDS	BCGMEX_1731c	NC_016804.1	1922525	1922914	R	hypothetical protein	complement(1922525..1922914)	Mycobacterium bovis BCG str. Mexico	11810016
YP_005171196.1	CDS	BCGMEX_1732c	NC_016804.1	1922911	1923138	R	hypothetical protein	complement(1922911..1923138)	Mycobacterium bovis BCG str. Mexico	11810017
YP_005171197.1	CDS	BCGMEX_1733	NC_016804.1	1923356	1924840	D	Differs from Rv1722 by 1aa, M31V Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; biotin carboxylase	1923356..1924840	Mycobacterium bovis BCG str. Mexico	11810018
YP_005171198.1	CDS	BCGMEX_1734	NC_016804.1	1924837	1926084	D	putative hydrolase	1924837..1926084	Mycobacterium bovis BCG str. Mexico	11810019
YP_005171199.1	CDS	BCGMEX_1735c	NC_016804.1	1926127	1926546	R	hypothetical protein	complement(1926127..1926546)	Mycobacterium bovis BCG str. Mexico	11810020
YP_005171200.1	CDS	BCGMEX_1736c	NC_016804.1	1926536	1927246	R	hypothetical protein	complement(1926536..1927246)	Mycobacterium bovis BCG str. Mexico	11810021
YP_005171201.1	CDS	BCGMEX_1737	NC_016804.1	1927347	1928732	D	Differs from Rv1726 by 1aa, Y326H, and from Mb1755 by 1aa, A61P in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico.; putative oxidoreductase	1927347..1928732	Mycobacterium bovis BCG str. Mexico	11810022
YP_005171202.1	CDS	BCGMEX_1738	NC_016804.1	1928765	1929334	D	Differs from Rv1727 and Mb1756 by 1aa, D22E in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1928765..1929334	Mycobacterium bovis BCG str. Mexico	11810023
YP_005171203.1	CDS	BCGMEX_1739c	NC_016804.1	1929359	1930129	R	hypothetical protein	complement(1929359..1930129)	Mycobacterium bovis BCG str. Mexico	11810024
YP_005171204.1	CDS	BCGMEX_1740c	NC_016804.1	1930126	1931064	R	hypothetical protein	complement(1930126..1931064)	Mycobacterium bovis BCG str. Mexico	11810025
YP_005171205.1	CDS	BCGMEX_1741c	NC_016804.1	1931130	1932683	R	putative penicillin-binding protein	complement(1931130..1932683)	Mycobacterium bovis BCG str. Mexico	11810026
YP_005171206.1	CDS	gabD2	NC_016804.1	1933115	1934671	D	Succinic semialdehyde dehydrogenase	1933115..1934671	Mycobacterium bovis BCG str. Mexico	11810027
YP_005171207.1	CDS	BCGMEX_1743c	NC_016804.1	1934681	1935229	R	hypothetical protein	complement(1934681..1935229)	Mycobacterium bovis BCG str. Mexico	11810028
YP_005171208.1	CDS	BCGMEX_1744c	NC_016804.1	1935293	1935925	R	Differs from Rv1733c by 1aa, H68Q in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	complement(1935293..1935925)	Mycobacterium bovis BCG str. Mexico	11810029
YP_005171209.1	CDS	BCGMEX_1745c	NC_016804.1	1936212	1936454	R	Differs from Mb1763c by 1aa, T79A in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1936212..1936454)	Mycobacterium bovis BCG str. Mexico	11810030
YP_005171210.1	CDS	BCGMEX_1746c	NC_016804.1	1936729	1937226	R	hypothetical protein	complement(1936729..1937226)	Mycobacterium bovis BCG str. Mexico	11810031
YP_005171211.1	CDS	narX	NC_016804.1	1937666	1939624	R	Differs from Rv1736c by 2aa, H53D, G77D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative nitrate reductase	complement(1937666..1939624)	Mycobacterium bovis BCG str. Mexico	11810032
YP_005171212.1	CDS	narK2	NC_016804.1	1939621	1940808	R	putative nitrate/nitrite transporter	complement(1939621..1940808)	Mycobacterium bovis BCG str. Mexico	11810033
YP_005171213.1	CDS	BCGMEX_1749	NC_016804.1	1941095	1941379	D	hypothetical protein	1941095..1941379	Mycobacterium bovis BCG str. Mexico	11810034
YP_005171214.1	CDS	BCGMEX_1750c	NC_016804.1	1941393	1943075	R	Differs from Rv1739c by 1aa, L134R in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative sulfate-transport transmembrane protein ABC transporter	complement(1941393..1943075)	Mycobacterium bovis BCG str. Mexico	11810035
YP_005171215.1	CDS	BCGMEX_1751	NC_016804.1	1943143	1943355	D	hypothetical protein	1943143..1943355	Mycobacterium bovis BCG str. Mexico	11810036
YP_005171216.1	CDS	BCGMEX_1752	NC_016804.1	1943355	1943603	D	Differs from Rv1741 by 1aa, T67K in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1943355..1943603	Mycobacterium bovis BCG str. Mexico	11810037
YP_005171217.1	CDS	BCGMEX_1753	NC_016804.1	1943684	1944349	D	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium bovis, a single base insertion leads to shorter product with a different NH2 part compared to its homolog in Mycobacterium tuberculosis strain H37Rv; hypothetical protein	1943684..1944349	Mycobacterium bovis BCG str. Mexico	11810038
YP_005171218.1	CDS	pknE	NC_016804.1	1944443	1946143	D	Differs from Mb1772 by 1aa, V56D in Mycobacterium tuberculosis, BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane serine/threonine-protein kinase E	1944443..1946143	Mycobacterium bovis BCG str. Mexico	11810039
YP_005171219.1	CDS	BCGMEX_1755c	NC_016804.1	1946428	1946829	R	Differs from Rv1744c by 1aa, Q121R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1946428..1946829)	Mycobacterium bovis BCG str. Mexico	11810040
YP_005171220.1	CDS	idi	NC_016804.1	1946900	1947430	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium bovis, truncation at the 3' end due to a single base tranversion, leads to a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (176 aa versus 203 aa). Differs from Mb1774c by 1aa, F48S in BCG Pasteur, BCG Tokyo and BCG Mexico; isopentenyl-diphosphate delta-isomerase	complement(1946900..1947430)	Mycobacterium bovis BCG str. Mexico	11810041
YP_005171221.1	CDS	pknF	NC_016804.1	1947577	1949007	D	Differs from Rv1746 by 1aa, T325A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; anchored-membrane serine/threonine-protein kinase	1947577..1949007	Mycobacterium bovis BCG str. Mexico	11810042
YP_005171222.1	CDS	BCGMEX_1758	NC_016804.1	1949069	1951666	D	putative transmembrane ATP-binding protein ABC transporter	1949069..1951666	Mycobacterium bovis BCG str. Mexico	11810043
YP_005171223.1	CDS	BCGMEX_1759	NC_016804.1	1952039	1952770	D	hypothetical protein	1952039..1952770	Mycobacterium bovis BCG str. Mexico	11810044
YP_005171224.1	CDS	BCGMEX_1760c	NC_016804.1	1952767	1953324	R	putative integral membrane protein	complement(1952767..1953324)	Mycobacterium bovis BCG str. Mexico	11810045
YP_005171225.1	CDS	fadD1	NC_016804.1	1953408	1955006	R	acyl-CoA synthetase	complement(1953408..1955006)	Mycobacterium bovis BCG str. Mexico	11810046
YP_005171226.1	CDS	BCGMEX_1762	NC_016804.1	1955060	1956442	D	Differs from Rv1751 by 2aa, T311M, L439V, and from Mb1780 by 1aa, T311M in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1955060..1956442	Mycobacterium bovis BCG str. Mexico	11810047
YP_005171227.1	CDS	BCGMEX_1763	NC_016804.1	1956569	1957018	D	hypothetical protein	1956569..1957018	Mycobacterium bovis BCG str. Mexico	11810048
YP_005171228.1	CDS	PPE24	NC_016804.1	1957053	1960133	R	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, PPE24 differs in the 26 aa tandem repeat region, two copies less (in-frame deletion of 156 bp), and in the 25 aa repeat region, 2 and one more copies (in-frame insertion of 150bp and 75bp), respectively, compared to their homolog in Mycobacterium tuberculosis strain H37Rv; PPE family protein	complement(1957053..1960133)	Mycobacterium bovis BCG str. Mexico	11810049
YP_005171229.1	CDS	BCGMEX_1765c	NC_016804.1	1960337	1962028	R	Differs from Rv1754c and Mb1783c by 1aa, S546N in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1960337..1962028)	Mycobacterium bovis BCG str. Mexico	11810050
YP_005171230.1	CDS	plcD	NC_016804.1	1962212	1963756	R	Truncated by RvD2 deletion (6804bp) in Mycobacterium tuberculosis strain H37Rv; putative phospholipase C 4	complement(1962212..1963756)	Mycobacterium bovis BCG str. Mexico	11810051
YP_005171231.1	CDS	BCGMEX_1767c	NC_016804.1	1963885	1965069	R	No Equivalent in Mycobacterium tuberculosis strain H37Rv. Belongs to the RvD2 region; hypothetical protein	complement(1963885..1965069)	Mycobacterium bovis BCG str. Mexico	11810052
YP_005171232.1	CDS	BCGMEX_1768	NC_016804.1	1965219	1966358	D	No Equivalent in Mycobacterium tuberculosis strain H37Rv. Belongs to RvD2 region; putative sulfite oxidase	1965219..1966358	Mycobacterium bovis BCG str. Mexico	11810053
YP_005171233.1	CDS	mmpL14	NC_016804.1	1966559	1969396	D	No Equivalent in Mycobacterium tuberculosis strain H37Rv. Belongs to RvD2 region; putative transmembrane transport protein	1966559..1969396	Mycobacterium bovis BCG str. Mexico	11810054
YP_005171234.1	CDS	cut1	NC_016804.1	1969717	1970373	D	Belongs to the RvD2 region. In Mycobacterium tuberculosis strain H37Rv, Rv1758 is interrupted by IS6110 insertion element and the 5'-end is deleted; putative cutinase	1969717..1970373	Mycobacterium bovis BCG str. Mexico	11810055
YP_005171235.1	CDS	wag22b	NC_016804.1	1970640	1973048	R	In Mycobacterium tuberculosis strain H37Rv, Rv1759c exists as a single gene. In Mycobacterium bovis BCG Pasteur, Tokyo and BCG Mexico, and Mycobacterium bovis, a single base deletion splits wag22 into 2 parts, wag22a and wag22b. Differs from Mb1789c and Rv1759c by three deletions R129 replaced by AG, 5aa deletion at position 739 and 12aa deletion at position 777 making protein smaller (802 aa versus 820 aa) in BCG Pasteur and BCG Mexico. 5aa deletion at position 739 and 12aa deletion at position 777 making protein smaller (803 aa versus 820 aa) in BCG Tokyo.; PE-PGRS family protein (second part)	complement(1970640..1973048)	Mycobacterium bovis BCG str. Mexico	11810056
YP_005171236.1	CDS	wag22a	NC_016804.1	1973045	1973329	R	In Mycobacterium tuberculosis strain H37Rv, Rv1759c exists as a single gene. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium bovis, a single base deletion splits wag22 into 2 parts, wag22a and wag22b. Differs from Mb1789c and Rv1759c by three deletions R129 replaced by AG, 5aa deletion at position 739 and 12aa deletion at position 777 making protein smaller (802 aa versus 820 aa) in BCG Pasteur and BCG Mexico. 5aa deletion at position 739 and 12aa deletion at position 777 making protein smaller (803 aa versus 820 aa) in BCG Tokyo.; PE PGRS family protein	complement(1973045..1973329)	Mycobacterium bovis BCG str. Mexico	11810057
YP_005171237.1	CDS	BCGMEX_1773	NC_016804.1	1973905	1975434	D	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a frameshift due to a single base deletion leads to a longer product with a different COOH part compared to its homolog in Mycobacterium tuberculosis strain H37Rv. Also differs from Rv1760 by 1aa, V219E; hypothetical protein	1973905..1975434	Mycobacterium bovis BCG str. Mexico	11810058
YP_005171238.1	CDS	BCGMEX_1774c	NC_016804.1	1975422	1975805	R	hypothetical protein	complement(1975422..1975805)	Mycobacterium bovis BCG str. Mexico	11810059
YP_005171239.1	CDS	BCGMEX_1775c	NC_016804.1	1975805	1976593	R	hypothetical protein	complement(1975805..1976593)	Mycobacterium bovis BCG str. Mexico	11810060
YP_005171240.1	CDS	BCGMEX_1776c	NC_016804.1	1976733	1977200	R	In Mycobacterium tuberculosis strain H37Rv this region is occupied by IS6110 which interrupts the gene and appears to have deleted sequences downstream. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico, and Mycobacterium bovis, there is an 848bp sequence that has replaced a 121bp sequence; hypothetical protein	complement(1976733..1977200)	Mycobacterium bovis BCG str. Mexico	11810061
YP_005171241.1	CDS	BCGMEX_1777c	NC_016804.1	1977298	1977450	R	In Mycobacterium tuberculosis strain H37Rv this region is occupied by IS6110 which appears to have deleted sequences downstream. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, there is an 848bp sequence that has replaced a 121bp sequence; hypothetical protein	complement(1977298..1977450)	Mycobacterium bovis BCG str. Mexico	11810062
YP_005171242.1	CDS	BCGMEX_1778c	NC_016804.1	1977611	1978867	R	In Mycobacterium bovis BCG Pasteur, deletion of 9068 bp (region of difference RD14), compared to Mycobacterium tuberculosis H37Rv, Mycobacterium bovis AF2122/97, BCG Tokyo and BCG Mexico, removes genes Rv1765A-Rv1772 and merges truncated genes Rv1773c and Rv1765c in BCG Pasteur. Mycobacterium bovis (Mb1794c) and BCG Tokyo have a longer products to its homolog in Mycobacterium tuberculosis H37Rv (Rv1765c, 418 aa versus 365 aa).; hypothetical protein	complement(1977611..1978867)	Mycobacterium bovis BCG str. Mexico	11810063
YP_005171243.1	CDS	BCGMEX_1779c	NC_016804.1	1979494	1979709	R	Equivalent to Mycobacterium bovis (Mb1975c) and Mycobavterium tuberculosis H37Rv (Rv1765A) in Mycobacterium bovis BCG Tokyo and BCG Mexico; hypothetical protein	complement(1979494..1979709)	Mycobacterium bovis BCG str. Mexico	11810064
YP_005171244.1	CDS	BCGMEX_1780	NC_016804.1	1980089	1980358	D	Equivalent to Mycobacterium bovis (Mb1975A) and Mycobavterium tuberculosis H37Rv (Rv1766) in Mycobacterium bovis BCG Tokyo and BCG Mexico; transposase	1980089..1980358	Mycobacterium bovis BCG str. Mexico	11810065
YP_005171245.1	CDS	BCGMEX_1781	NC_016804.1	1980426	1980785	D	Equivalent to Mycobacterium bovis (Mb1796) and Mycobavterium tuberculosis H37Rv (Rv1767) in Mycobacterium bovis BCG Tokyo and BCG Mexico; hypothetical protein	1980426..1980785	Mycobacterium bovis BCG str. Mexico	11810066
YP_005171246.1	CDS	PE_PGRS31	NC_016804.1	1980966	1982840	D	In Mycobacterium bovis, Mycobacterium BCG Tokyo and BCG Mexico, a 18bp insertion, leads to a longer product compared to its homolog in Mycobacterium tuberculosis H37Rv (624 aa versus 618 aa).; PE-PGRS family protein	1980966..1982840	Mycobacterium bovis BCG str. Mexico	11810067
YP_005171247.1	CDS	BCGMEX_1783	NC_016804.1	1982996	1984240	D	Equivalent to Mycobacterium bovis (Mb1798) and Mycobavterium tuberculosis H37Rv (Rv1769) in Mycobacterium bovis BCG Tokyo and BCG Mexico; hypothetical protein	1982996..1984240	Mycobacterium bovis BCG str. Mexico	11810068
YP_005171248.1	CDS	BCGMEX_1784	NC_016804.1	1984248	1985534	D	Equivalent to Mycobacterium bovis (Mb1799) and Mycobavterium tuberculosis H37Rv (Rv1770) in Mycobacterium bovis BCG Tokyo and BCG Mexico; hypothetical protein	1984248..1985534	Mycobacterium bovis BCG str. Mexico	11810069
YP_005171249.1	CDS	BCGMEX_1785	NC_016804.1	1985531	1986817	D	Equivalent to Mycobacterium bovis (Mb1800) and Mycobavterium tuberculosis H37Rv (Rv1771) in Mycobacterium bovis BCG Tokyo and BCG Mexico; Oxidoreductase	1985531..1986817	Mycobacterium bovis BCG str. Mexico	11810070
YP_005171250.1	CDS	BCGMEX_1786	NC_016804.1	1987006	1987317	D	Equivalent to Mycobacterium bovis (Mb1801) and Mycobacterium tuberculosis H37Rv (Rv1772) in Mycobacterium bovis BCG Tokyo and BCG Mexico; hypothetical protein	1987006..1987317	Mycobacterium bovis BCG str. Mexico	11810071
YP_005171251.1	CDS	BCGMEX_1787c	NC_016804.1	1987390	1988136	R	Equivalent to Mycobacterium bovis (Mb1802c) and Mycobacterium tuberculosis H37Rv (Rv1773c) in Mycobacterium bovis BCG Tokyo and BCG Mexico; transcriptional regulatory protein	complement(1987390..1988136)	Mycobacterium bovis BCG str. Mexico	11810072
YP_005171252.1	CDS	BCGMEX_1788	NC_016804.1	1988202	1989542	D	putative oxidoreductase	1988202..1989542	Mycobacterium bovis BCG str. Mexico	11810073
YP_005171253.1	CDS	BCGMEX_1789	NC_016804.1	1989542	1990360	D	hypothetical protein	1989542..1990360	Mycobacterium bovis BCG str. Mexico	11810074
YP_005171254.1	CDS	BCGMEX_1790c	NC_016804.1	1990365	1990925	R	transcriptional regulator	complement(1990365..1990925)	Mycobacterium bovis BCG str. Mexico	11810075
YP_005171255.1	CDS	cyp144	NC_016804.1	1991026	1992330	D	Differs from Rv1777 by 1aa Q325H in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo  and BCG Mexico; putative cytochrome P450 144	1991026..1992330	Mycobacterium bovis BCG str. Mexico	11810076
YP_005171256.1	CDS	BCGMEX_1792c	NC_016804.1	1992451	1992900	R	Differs from Mb1807c by 1aa T32R in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(1992451..1992900)	Mycobacterium bovis BCG str. Mexico	11810077
YP_005171257.1	CDS	BCGMEX_1793c	NC_016804.1	1993056	1994849	R	putative integral membrane protein	complement(1993056..1994849)	Mycobacterium bovis BCG str. Mexico	11810078
YP_005171258.1	CDS	BCGMEX_1794	NC_016804.1	1995069	1995632	D	hypothetical protein	1995069..1995632	Mycobacterium bovis BCG str. Mexico	11810079
YP_005171259.1	CDS	malQ	NC_016804.1	1995672	1997846	R	Differs from Rv1781c and Mb1810c by 1aa, T12A in BCG Pasteur, BCG Tokyo and BCG Mexico; putative 4-alpha-glucanotransferase	complement(1995672..1997846)	Mycobacterium bovis BCG str. Mexico	11810080
YP_005171260.1	CDS	BCGMEX_1796	NC_016804.1	1998110	1999630	D	Differs from Rv1782 by 1aa H41R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	1998110..1999630	Mycobacterium bovis BCG str. Mexico	11810081
YP_005171261.1	CDS	BCGMEX_1797	NC_016804.1	1999627	2003802	D	In Mycobacterium tuberculosis strain H37Rv, Rv1783 and Rv1784 exist as 2 genes. In Mycobacterium bovis and in Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a single base transversion leads to a single product. Differs from Rv1783 and Mb1812 by 1aa, V692A in BCG Pasteur, similar to Rv1784 in BCG Pasteur,  Tokyo and BCG Mexico; hypothetical protein	1999627..2003802	Mycobacterium bovis BCG str. Mexico	11810082
YP_005171262.1	CDS	cyp143	NC_016804.1	2003817	2004998	R	putative Cytochrome P450 143	complement(2003817..2004998)	Mycobacterium bovis BCG str. Mexico	11810083
YP_005171263.1	CDS	BCGMEX_1799	NC_016804.1	2005198	2005401	D	putative ferredoxin	2005198..2005401	Mycobacterium bovis BCG str. Mexico	11810084
YP_005171264.1	CDS	PPE25	NC_016804.1	2005671	2006765	D	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur,BCG Tokyo and BCG Mexico, a 8 bp to 5 bp substitution, leads to a slightly shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (364 aa versus 365 aa). similar to Mb1815; PPE family protein	2005671..2006765	Mycobacterium bovis BCG str. Mexico	11810085
YP_005171265.1	CDS	PE18	NC_016804.1	2006844	2007143	D	PE family protein	2006844..2007143	Mycobacterium bovis BCG str. Mexico	11810086
YP_005171266.1	CDS	PPE26	NC_016804.1	2007157	2008338	D	Differs from Mb1817 by 1aa, S274A, similar to Rv1789 in BCG Pasteur, BCG Tokyo and BCG Mexico; PPE family protein	2007157..2008338	Mycobacterium bovis BCG str. Mexico	11810087
YP_005171267.1	CDS	PPE27	NC_016804.1	2008792	2009844	D	similar to Rv1790 differs from Mb1818 by 1aa, P190S in BCG Pasteur, BCG Tokyo and BCG Mexico; PPE family protein	2008792..2009844	Mycobacterium bovis BCG str. Mexico	11810088
YP_005171268.1	CDS	PE19	NC_016804.1	2010271	2010570	D	PE family protein	2010271..2010570	Mycobacterium bovis BCG str. Mexico	11810089
YP_005171269.1	CDS	esxM	NC_016804.1	2010714	2011010	D	Differs from Rv1792 by 1aa Q48M in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2010714..2011010	Mycobacterium bovis BCG str. Mexico	11810090
YP_005171270.1	CDS	esxN	NC_016804.1	2011061	2011345	D	putative ESAT-6 like protein 5	2011061..2011345	Mycobacterium bovis BCG str. Mexico	11810091
YP_005171271.1	CDS	BCGMEX_1807	NC_016804.1	2011433	2012335	D	hypothetical protein	2011433..2012335	Mycobacterium bovis BCG str. Mexico	11810092
YP_005171272.1	CDS	BCGMEX_1808	NC_016804.1	2012607	2014118	D	Differs from Mb1823 and Rv1795 by 1aa, T256A and D261G, respectively, in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2012607..2014118	Mycobacterium bovis BCG str. Mexico	11810093
YP_005171273.1	CDS	BCGMEX_1809	NC_016804.1	2014096	2015853	D	putative pro-rich protease	2014096..2015853	Mycobacterium bovis BCG str. Mexico	11810094
YP_005171274.1	CDS	BCGMEX_1810	NC_016804.1	2015850	2017070	D	hypothetical protein	2015850..2017070	Mycobacterium bovis BCG str. Mexico	11810095
YP_005171275.1	CDS	BCGMEX_1811	NC_016804.1	2017067	2018899	D	hypothetical protein	2017067..2018899	Mycobacterium bovis BCG str. Mexico	11810096
YP_005171276.1	CDS	lppT	NC_016804.1	2019526	2019717	D	putative lipoprotein	2019526..2019717	Mycobacterium bovis BCG str. Mexico	11810097
YP_005171277.1	CDS	PPE28	NC_016804.1	2019820	2021787	D	Differs from Rv1800 by 3aa, W144C, V253F, V432I, and from Mb1828 by 1aa, V432I in BCG Pasteur, BCG Tokyo and BCG Mexico; PPE family protein	2019820..2021787	Mycobacterium bovis BCG str. Mexico	11810098
YP_005171278.1	CDS	PPE29	NC_016804.1	2022368	2023639	D	PPE family protein	2022368..2023639	Mycobacterium bovis BCG str. Mexico	11810099
YP_005171279.1	CDS	PPE30	NC_016804.1	2023751	2025142	D	PPE family protein	2023751..2025142	Mycobacterium bovis BCG str. Mexico	11810100
YP_005171280.1	CDS	PE_PGRS32b	NC_016804.1	2025290	2026912	R	In Mycobacterium tuberculosis strain H37Rv, PE_PGRS32 exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, and BCG Tokyo, a frameshift due to a single base transition splits PE_PGRS32 into 2 parts, PE_PGRS32a and PE_PGRS32b; PE PGRS family protein	complement(2025290..2026912)	Mycobacterium bovis BCG str. Mexico	11810101
YP_005171281.1	CDS	PE_PGRS32a	NC_016804.1	2026946	2027209	R	In Mycobacterium tuberculosis strain H37Rv, PE_PGRS32 exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a single base transition splits PE_PGRS32 into 2 parts, PE_PGRS32a and PE_PGRS32b; PE-PGRS family protein	complement(2026946..2027209)	Mycobacterium bovis BCG str. Mexico	11810102
YP_005171282.1	CDS	BCGMEX_1818c	NC_016804.1	2027390	2027716	R	hypothetical protein	complement(2027390..2027716)	Mycobacterium bovis BCG str. Mexico	11810103
YP_005171283.1	CDS	BCGMEX_1819c	NC_016804.1	2028054	2028401	R	hypothetical protein	complement(2028054..2028401)	Mycobacterium bovis BCG str. Mexico	11810104
YP_005171284.1	CDS	PE20	NC_016804.1	2028439	2028738	D	PE family protein	2028439..2028738	Mycobacterium bovis BCG str. Mexico	11810105
YP_005171285.1	CDS	PPE31	NC_016804.1	2028753	2029964	D	Differs from Rv1807 by 2aa, S223F, L234V. similar to Mb1836 in BCG Pasteur, BCG Tokyo and BCG Mexico; PPE family protein	2028753..2029964	Mycobacterium bovis BCG str. Mexico	11810106
YP_005171286.1	CDS	PPE32	NC_016804.1	2030288	2031517	D	Differs from Rv1808 by 1aa, A301G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; PPE family protein	2030288..2031517	Mycobacterium bovis BCG str. Mexico	11810107
YP_005171287.1	CDS	PPE33a	NC_016804.1	2031649	2032212	D	In Mycobacterium tuberculosis strain H37Rv, PPE33 exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur,BCG Tokyo and BCG Mexico, a frameshift due to a single base transition splits PPE33 into 2 parts, PPE33a and PPE33b; PPE family protein	2031649..2032212	Mycobacterium bovis BCG str. Mexico	11810108
YP_005171288.1	CDS	BCGMEX_1825	NC_016804.1	2033300	2033656	D	hypothetical protein	2033300..2033656	Mycobacterium bovis BCG str. Mexico	11810110
YP_005171289.1	CDS	BCGMEX_1826	NC_016804.1	2033810	2034514	D	putative Mg2+ transport P-type atpase C MgtC	2033810..2034514	Mycobacterium bovis BCG str. Mexico	11810111
YP_005171290.1	CDS	BCGMEX_1827c	NC_016804.1	2034524	2035726	R	Differs from Rv1812c by 1aa, P30L in Mycobacteium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative dehydrogenase	complement(2034524..2035726)	Mycobacterium bovis BCG str. Mexico	11810112
YP_005171291.1	CDS	BCGMEX_1828c	NC_016804.1	2036048	2036479	R	hypothetical protein	complement(2036048..2036479)	Mycobacterium bovis BCG str. Mexico	11810113
YP_005171292.1	CDS	erg3	NC_016804.1	2036888	2037790	D	membrane-bound C-5 sterol desaturase	2036888..2037790	Mycobacterium bovis BCG str. Mexico	11810114
YP_005171293.1	CDS	BCGMEX_1830	NC_016804.1	2037895	2038560	D	Differs from Rv1815 by 1aa, F83I in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2037895..2038560	Mycobacterium bovis BCG str. Mexico	11810115
YP_005171294.1	CDS	BCGMEX_1831	NC_016804.1	2038623	2039327	D	putative transcriptional regulator	2038623..2039327	Mycobacterium bovis BCG str. Mexico	11810116
YP_005171295.1	CDS	BCGMEX_1832	NC_016804.1	2039808	2039888	D	hypothetical protein	2039808..2039888	Mycobacterium bovis BCG str. Mexico	11810117
YP_005171296.1	CDS	BCGMEX_1833	NC_016804.1	2039962	2041425	D	putative flavoprotein	2039962..2041425	Mycobacterium bovis BCG str. Mexico	11810118
YP_005171297.1	CDS	PE_PGRS33	NC_016804.1	2041545	2043050	R	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 9 bp insertion, leads to a longer product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (501 aa versus 498 aa). Differs from Rv1818c by 4aa, S233G, and deletion of 3aa near C-terminus. similar to Mb1849c; PE-PGRS family protein	complement(2041545..2043050)	Mycobacterium bovis BCG str. Mexico	11810119
YP_005171298.1	CDS	BCGMEX_1835c	NC_016804.1	2043185	2045104	R	Differs from Rv1819c by 1aa, V603I in BCG Pasteur, BCG Tokyo and BCG Mexico; putative drugs-transport transmembrane, ABC transporter, ATP-binding protein	complement(2043185..2045104)	Mycobacterium bovis BCG str. Mexico	11810120
YP_005171299.1	CDS	ilvG	NC_016804.1	2045175	2046818	D	putative Acetolactate synthase	2045175..2046818	Mycobacterium bovis BCG str. Mexico	11810121
YP_005171300.1	CDS	secA2	NC_016804.1	2046833	2049259	D	protein translocase subunit	2046833..2049259	Mycobacterium bovis BCG str. Mexico	11810122
YP_005171301.1	CDS	pgsA2	NC_016804.1	2049456	2050085	D	putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	2049456..2050085	Mycobacterium bovis BCG str. Mexico	11810123
YP_005171302.1	CDS	BCGMEX_1839	NC_016804.1	2050078	2051001	D	hypothetical protein	2050078..2051001	Mycobacterium bovis BCG str. Mexico	11810124
YP_005171303.1	CDS	BCGMEX_1840	NC_016804.1	2051030	2051395	D	hypothetical protein	2051030..2051395	Mycobacterium bovis BCG str. Mexico	11810125
YP_005171304.1	CDS	BCGMEX_1841	NC_016804.1	2051412	2052290	D	hypothetical protein	2051412..2052290	Mycobacterium bovis BCG str. Mexico	11810126
YP_005171305.1	CDS	gcvH	NC_016804.1	2052328	2052732	D	Differs from Rv1826 by 1aa, A80E in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; glycine cleavage system H protein	2052328..2052732	Mycobacterium bovis BCG str. Mexico	11810127
YP_005171306.1	CDS	cfp17	NC_016804.1	2052972	2053460	D	hypothetical protein	2052972..2053460	Mycobacterium bovis BCG str. Mexico	11810128
YP_005171307.1	CDS	BCGMEX_1844	NC_016804.1	2053457	2054200	D	hypothetical protein	2053457..2054200	Mycobacterium bovis BCG str. Mexico	11810129
YP_005171308.1	CDS	BCGMEX_1845	NC_016804.1	2054319	2054813	D	Differs from Mb1860 by 1aa R93C in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2054319..2054813	Mycobacterium bovis BCG str. Mexico	11810130
YP_005171309.1	CDS	BCGMEX_1846	NC_016804.1	2055161	2055838	D	hypothetical protein	2055161..2055838	Mycobacterium bovis BCG str. Mexico	11810131
YP_005171310.1	CDS	BCGMEX_1847	NC_016804.1	2055891	2056148	D	hypothetical protein	2055891..2056148	Mycobacterium bovis BCG str. Mexico	11810132
YP_005171311.1	CDS	gcvB	NC_016804.1	2056197	2059022	D	Differs from Rv1832 by 2aa, A215V, A448T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; glycine dehydrogenase	2056197..2059022	Mycobacterium bovis BCG str. Mexico	11810133
YP_005171312.1	CDS	BCGMEX_1849c	NC_016804.1	2059249	2060109	R	putative haloalkane dehalogenase	complement(2059249..2060109)	Mycobacterium bovis BCG str. Mexico	11810134
YP_005171313.1	CDS	BCGMEX_1850	NC_016804.1	2060150	2061016	D	Differs from Mb1865 by 1aa, V272A in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative hydrolase	2060150..2061016	Mycobacterium bovis BCG str. Mexico	11810135
YP_005171314.1	CDS	BCGMEX_1851c	NC_016804.1	2061021	2062907	R	hypothetical protein	complement(2061021..2062907)	Mycobacterium bovis BCG str. Mexico	11810136
YP_005171315.1	CDS	BCGMEX_1852c	NC_016804.1	2062923	2064956	R	Differs from Rv1836c by 2aa, C137R, H591R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2062923..2064956)	Mycobacterium bovis BCG str. Mexico	11810137
YP_005171316.1	CDS	glcB	NC_016804.1	2065076	2067301	R	Malate synthase G	complement(2065076..2067301)	Mycobacterium bovis BCG str. Mexico	11810138
YP_005171317.1	CDS	BCGMEX_1854c	NC_016804.1	2067577	2067972	R	hypothetical protein	complement(2067577..2067972)	Mycobacterium bovis BCG str. Mexico	11810139
YP_005171318.1	CDS	BCGMEX_1855c	NC_016804.1	2067969	2068232	R	hypothetical protein	complement(2067969..2068232)	Mycobacterium bovis BCG str. Mexico	11810140
YP_005171319.1	CDS	PE_PGRS34a	NC_016804.1	2069019	2069837	R	In Mycobacterium bovis, an in-frame deletion of 147bp leads to a shorter protein compared to its homolog in Mycobacterium tuberculosis strain H37Rv (466 aa versus 518 aa). In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a deletion of 1bp, splits PPE34 into 2 parts, PPE34a and PPE34b; PE-PGRS family protein	complement(2069019..2069837)	Mycobacterium bovis BCG str. Mexico	11810142
YP_005171320.1	CDS	BCGMEX_1858c	NC_016804.1	2070000	2071049	R	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 12 bp in-frame insertion leads to a longer product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (349 aa versus 345 aa); hypothetical protein	complement(2070000..2071049)	Mycobacterium bovis BCG str. Mexico	11810143
YP_005171321.1	CDS	BCGMEX_1859c	NC_016804.1	2071049	2072416	R	Differs from Rv1842c by 1aa, S437L in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2071049..2072416)	Mycobacterium bovis BCG str. Mexico	11810144
YP_005171322.1	CDS	guaB1	NC_016804.1	2072590	2074029	R	inosine-5-monophosphate dehydrogenase	complement(2072590..2074029)	Mycobacterium bovis BCG str. Mexico	11810145
YP_005171323.1	CDS	gnd1	NC_016804.1	2073395	2075452	R	similar to Mb1875c, including frameshift at 3'end due to single base insertion, and extensive overlap with guaB1 in Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico. In addition, differs from Rv1844c by 2 codon deletion after codon 70 in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; 6-phosphogluconate dehydrogenase	complement(2073395..2075452)	Mycobacterium bovis BCG str. Mexico	11810146
YP_005171324.1	CDS	BCGMEX_1862c	NC_016804.1	2075542	2076492	R	Differs from Rv1845c and Mb1876c by 1aa, A222V in BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	complement(2075542..2076492)	Mycobacterium bovis BCG str. Mexico	11810147
YP_005171325.1	CDS	BCGMEX_1863c	NC_016804.1	2076507	2076923	R	Differs from Rv1846c by 1aa, Y92D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; transcriptional regulator	complement(2076507..2076923)	Mycobacterium bovis BCG str. Mexico	11810148
YP_005171326.1	CDS	BCGMEX_1864	NC_016804.1	2077201	2077623	D	Differs from Rv1847 by 1aa, L90V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2077201..2077623	Mycobacterium bovis BCG str. Mexico	11810149
YP_005171327.1	CDS	ureA	NC_016804.1	2077672	2077974	D	urease subunit gamma	2077672..2077974	Mycobacterium bovis BCG str. Mexico	11810150
YP_005171328.1	CDS	ureB	NC_016804.1	2077971	2078285	D	urease subunit beta	2077971..2078285	Mycobacterium bovis BCG str. Mexico	11810151
YP_005171329.1	CDS	ureC	NC_016804.1	2078285	2080018	D	urease subunit alpha	2078285..2080018	Mycobacterium bovis BCG str. Mexico	11810152
YP_005171330.1	CDS	ureF	NC_016804.1	2080018	2080653	D	Differs from Rv1851 by 1aa, L34V in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; urease accessory protein UreF	2080018..2080653	Mycobacterium bovis BCG str. Mexico	11810153
YP_005171331.1	CDS	ureG	NC_016804.1	2080664	2081338	D	urease accessory protein UreG	2080664..2081338	Mycobacterium bovis BCG str. Mexico	11810154
YP_005171332.1	CDS	ureD	NC_016804.1	2081346	2081972	D	putative urease accessory protein	2081346..2081972	Mycobacterium bovis BCG str. Mexico	11810155
YP_005171333.1	CDS	ndh	NC_016804.1	2081975	2083366	R	Differs from Rv1854c by 1aa, R313G, and Mb1885c by 2aa, R284W, R313G in BCG Pasteur, BCG Tokyo and BCG Mexico; putative NADH dehydrogenase	complement(2081975..2083366)	Mycobacterium bovis BCG str. Mexico	11810156
YP_005171334.1	CDS	BCGMEX_1872c	NC_016804.1	2083507	2084430	R	putative oxidoreductase	complement(2083507..2084430)	Mycobacterium bovis BCG str. Mexico	11810157
YP_005171335.1	CDS	BCGMEX_1873c	NC_016804.1	2084469	2085146	R	Differs from Rv1856c by 1aa, H185R in BCG Pasteur, BCG Tokyo and BCG Mexico; Oxidoreductase, short-chain dehydrogenase	complement(2084469..2085146)	Mycobacterium bovis BCG str. Mexico	11810158
YP_005171336.1	CDS	modA	NC_016804.1	2085308	2086093	D	molybdate-binding protein	2085308..2086093	Mycobacterium bovis BCG str. Mexico	11810159
YP_005171337.1	CDS	modB	NC_016804.1	2086096	2086890	D	molybdenum transport system permease protein	2086096..2086890	Mycobacterium bovis BCG str. Mexico	11810160
YP_005171338.1	CDS	modC	NC_016804.1	2086897	2088006	D	Differs from Rv1859 by 1aa, M313T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; molybdenum transport ATP-binding protein	2086897..2088006	Mycobacterium bovis BCG str. Mexico	11810161
YP_005171339.1	CDS	apa	NC_016804.1	2088059	2089036	D	Differs from Rv1860 by 1aa, L136F in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; alanine and proline rich secreted protein	2088059..2089036	Mycobacterium bovis BCG str. Mexico	11810162
YP_005171340.1	CDS	BCGMEX_1878	NC_016804.1	2089488	2089793	D	transmembrane protein	2089488..2089793	Mycobacterium bovis BCG str. Mexico	11810163
YP_005171341.1	CDS	adhA	NC_016804.1	2089868	2090908	D	putative alcohol dehydrogenase	2089868..2090908	Mycobacterium bovis BCG str. Mexico	11810164
YP_005171342.1	CDS	BCGMEX_1880c	NC_016804.1	2090915	2091685	R	putative integral membrane protein	complement(2090915..2091685)	Mycobacterium bovis BCG str. Mexico	11810165
YP_005171343.1	CDS	BCGMEX_1881c	NC_016804.1	2091678	2092433	R	hypothetical protein	complement(2091678..2092433)	Mycobacterium bovis BCG str. Mexico	11810166
YP_005171344.1	CDS	BCGMEX_1882c	NC_016804.1	2092430	2093290	R	short-chain dehydrogenase	complement(2092430..2093290)	Mycobacterium bovis BCG str. Mexico	11810167
YP_005171345.1	CDS	BCGMEX_1883	NC_016804.1	2093464	2095800	D	Differs from Rv1866 by 1aa, Q17E in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2093464..2095800	Mycobacterium bovis BCG str. Mexico	11810168
YP_005171346.1	CDS	BCGMEX_1884	NC_016804.1	2096088	2097572	D	acetyl-CoA acetyltransferase	2096088..2097572	Mycobacterium bovis BCG str. Mexico	11810169
YP_005171347.1	CDS	BCGMEX_1885	NC_016804.1	2097671	2099770	D	Differs from Rv1868 and Mb1899 by 1aa, G621D in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2097671..2099770	Mycobacterium bovis BCG str. Mexico	11810170
YP_005171348.1	CDS	BCGMEX_1886c	NC_016804.1	2099784	2101019	R	Differs from Mb1900c and Rv1869c by 1aa, P4S in BCG Pasteur, BCG Tokyo and BCG Mexico; putative reductase	complement(2099784..2101019)	Mycobacterium bovis BCG str. Mexico	11810171
YP_005171349.1	CDS	BCGMEX_1887c	NC_016804.1	2101086	2101754	R	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a single base transversion and a single base transition lead to a slightly longer product compared to the homolog in Mycobacterium tuberculosis strain H37Rv (222 aa versus 211 aa); hypothetical protein	complement(2101086..2101754)	Mycobacterium bovis BCG str. Mexico	11810172
YP_005171350.1	CDS	BCGMEX_1888c	NC_016804.1	2101819	2102208	R	hypothetical protein	complement(2101819..2102208)	Mycobacterium bovis BCG str. Mexico	11810173
YP_005171351.1	CDS	lldD2	NC_016804.1	2102231	2103475	R	Differs from Rv1872c by 2aa, A59G, A176V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative L-lactate dehydrogenase	complement(2102231..2103475)	Mycobacterium bovis BCG str. Mexico	11810174
YP_005171352.1	CDS	BCGMEX_1890	NC_016804.1	2103498	2103935	D	Differs from Mb1904 by 1aa, D102N in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2103498..2103935	Mycobacterium bovis BCG str. Mexico	11810175
YP_005171353.1	CDS	BCGMEX_1891	NC_016804.1	2104008	2104694	D	hypothetical protein	2104008..2104694	Mycobacterium bovis BCG str. Mexico	11810176
YP_005171354.1	CDS	BCGMEX_1892	NC_016804.1	2104705	2105148	D	hypothetical protein	2104705..2105148	Mycobacterium bovis BCG str. Mexico	11810177
YP_005171355.1	CDS	bfrA	NC_016804.1	2105664	2106143	D	putative bacterioferritin	2105664..2106143	Mycobacterium bovis BCG str. Mexico	11810178
YP_005171356.1	CDS	BCGMEX_1894	NC_016804.1	2106228	2107763	D	In Mycobacterium tuberculosis strain H37Rv, Rv1877 exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a single base insertion, splits Rv1877 into 2 parts; putative integral membrane protein	2106228..2107763	Mycobacterium bovis BCG str. Mexico	11810179
YP_005171357.1	CDS	BCGMEX_1895	NC_016804.1	2107078	2108292	D	In Mycobacterium tuberculosis strain H37Rv, Rv1877 exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a single base insertion, splits Rv1877 into 2 parts; putative integral membrane protein	2107078..2108292	Mycobacterium bovis BCG str. Mexico	11810180
YP_005171358.1	CDS	glnA3	NC_016804.1	2108347	2109699	D	similar to Rv1878, differs from Mb1910 by 1aa, A275T in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative glutamine synthetase	2108347..2109699	Mycobacterium bovis BCG str. Mexico	11810181
YP_005171359.1	CDS	BCGMEX_1897	NC_016804.1	2109702	2110838	D	hypothetical protein	2109702..2110838	Mycobacterium bovis BCG str. Mexico	11810182
YP_005171360.1	CDS	cyp140	NC_016804.1	2110866	2112182	R	putative cytochrome P450 140	complement(2110866..2112182)	Mycobacterium bovis BCG str. Mexico	11810183
YP_005171361.1	CDS	lppE	NC_016804.1	2112232	2112654	R	hypothetical protein	complement(2112232..2112654)	Mycobacterium bovis BCG str. Mexico	11810184
YP_005171362.1	CDS	BCGMEX_1900c	NC_016804.1	2112695	2113528	R	putative short-chain type dehydrogenase/reductase	complement(2112695..2113528)	Mycobacterium bovis BCG str. Mexico	11810185
YP_005171363.1	CDS	BCGMEX_1901c	NC_016804.1	2113556	2114032	R	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 15 bp in-frame insertion leads to a longer product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (158 aa versus 153 aa); hypothetical protein	complement(2113556..2114032)	Mycobacterium bovis BCG str. Mexico	11810186
YP_005171364.1	CDS	rpfC	NC_016804.1	2114071	2114601	R	putative resuscitation-promoting factor	complement(2114071..2114601)	Mycobacterium bovis BCG str. Mexico	11810187
YP_005171365.1	CDS	BCGMEX_1903c	NC_016804.1	2114613	2115212	R	periplasmic chorismate mutase I	complement(2114613..2115212)	Mycobacterium bovis BCG str. Mexico	11810188
YP_005171366.1	CDS	fbpB	NC_016804.1	2115230	2116207	R	Differs from Rv1886c and Mb1918c by 1aa, L140F; Secreted antigen 85-B	complement(2115230..2116207)	Mycobacterium bovis BCG str. Mexico	11810189
YP_005171367.1	CDS	BCGMEX_1905	NC_016804.1	2116598	2117740	D	Differs from Rv1887 and Mb1919 by 1aa, C121Y in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2116598..2117740	Mycobacterium bovis BCG str. Mexico	11810190
YP_005171368.1	CDS	BCGMEX_1906c	NC_016804.1	2117710	2118429	R	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 10 bp insertion leads to a longer product with a different COOH part compared to its homolog in Mycobacterium tuberculosis H37Rv (239 aa versus 186 aa); putative transmembrane protein	complement(2117710..2118429)	Mycobacterium bovis BCG str. Mexico	11810191
YP_005171369.1	CDS	BCGMEX_1907c	NC_016804.1	2118794	2118967	R	hypothetical protein	complement(2118794..2118967)	Mycobacterium bovis BCG str. Mexico	11810192
YP_005171370.1	CDS	BCGMEX_1908c	NC_016804.1	2119011	2119367	R	methyltransferase	complement(2119011..2119367)	Mycobacterium bovis BCG str. Mexico	11810193
YP_005171371.1	CDS	BCGMEX_1909c	NC_016804.1	2119426	2120037	R	hypothetical protein	complement(2119426..2120037)	Mycobacterium bovis BCG str. Mexico	11810194
YP_005171372.1	CDS	BCGMEX_1910	NC_016804.1	2120091	2120498	D	hypothetical protein	2120091..2120498	Mycobacterium bovis BCG str. Mexico	11810195
YP_005171373.1	CDS	BCGMEX_1911	NC_016804.1	2120515	2120826	D	hypothetical protein	2120515..2120826	Mycobacterium bovis BCG str. Mexico	11810196
YP_005171374.1	CDS	BCGMEX_1912	NC_016804.1	2120836	2121054	D	hypothetical protein	2120836..2121054	Mycobacterium bovis BCG str. Mexico	11810197
YP_005171375.1	CDS	BCGMEX_1913c	NC_016804.1	2121089	2122219	R	hypothetical protein	complement(2121089..2122219)	Mycobacterium bovis BCG str. Mexico	11810198
YP_005171376.1	CDS	BCGMEX_1914	NC_016804.1	2122871	2123194	D	In Mycobacterium tuberculosis strain H37Rv, Rv1895 exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, two frameshifts due to a single base deletion and a single base insertion, consecutively, splits Rv1895 into 2 main parts, Mb1928 and Mb1929; putative dehydrogenase	2122871..2123194	Mycobacterium bovis BCG str. Mexico	11810199
YP_005171377.1	CDS	BCGMEX_1915	NC_016804.1	2123191	2123895	D	In Mycobacterium tuberculosis strain H37Rv, Rv1895 exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, two frameshifts due to a single base deletion and a single base insertion, consecutively, splits Rv1895 into 2 main parts, Mb1928 and Mb1929; putative dehydrogenase	2123191..2123895	Mycobacterium bovis BCG str. Mexico	11810200
YP_005171378.1	CDS	BCGMEX_1916c	NC_016804.1	2123885	2124796	R	putative S-adenosyl-L-methionine-dependent methyltransferase	complement(2123885..2124796)	Mycobacterium bovis BCG str. Mexico	11810201
YP_005171379.1	CDS	BCGMEX_1917c	NC_016804.1	2124801	2125232	R	Differs from Rv1897c and Mb1932c by 1aa, G60D in BCG Pasteur, BCG Tokyo and BCG Mexico; D-tyrosyl-tRNA deacylase	complement(2124801..2125232)	Mycobacterium bovis BCG str. Mexico	11810202
YP_005171380.1	CDS	BCGMEX_1918	NC_016804.1	2125290	2125598	D	hypothetical protein	2125290..2125598	Mycobacterium bovis BCG str. Mexico	11810203
YP_005171381.1	CDS	lppD	NC_016804.1	2125564	2126640	R	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur,BCG Tokyo and BCG Mexico, a 45 bp in-frame insertion leads to a longer product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (358 aa versus 343 aa); putative lipoprotein	complement(2125564..2126640)	Mycobacterium bovis BCG str. Mexico	11810204
YP_005171382.1	CDS	lipJ	NC_016804.1	2126640	2128028	R	Differs from Rv1900c and Mb1935c by 1aa, M204I and R170Q, respectively, in BCG Pasteur, BCG Tokyo and BCG Mexico; putative lignin peroxidase	complement(2126640..2128028)	Mycobacterium bovis BCG str. Mexico	11810205
YP_005171383.1	CDS	cinA	NC_016804.1	2128057	2129349	D	Competence/damage-inducible protein A	2128057..2129349	Mycobacterium bovis BCG str. Mexico	11810206
YP_005171384.1	CDS	nanT	NC_016804.1	2129401	2130669	R	putative sialic acid-transport integral membrane protein	complement(2129401..2130669)	Mycobacterium bovis BCG str. Mexico	11810207
YP_005171385.1	CDS	BCGMEX_1923	NC_016804.1	2130759	2131163	D	hypothetical protein	2130759..2131163	Mycobacterium bovis BCG str. Mexico	11810208
YP_005171386.1	CDS	BCGMEX_1924	NC_016804.1	2131349	2131780	D	Differs from Rv1904 by 1aa, M130T in BCG Pasteur, BCG Tokyo and BCG Mexico; anti-sigma factor antagonist	2131349..2131780	Mycobacterium bovis BCG str. Mexico	11810209
YP_005171387.1	CDS	aao	NC_016804.1	2131828	2132790	R	Differs from Rv1905c by 1aa, T240P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, and BCG Tokyo; putative D-amino-acid oxidase	complement(2131828..2132790)	Mycobacterium bovis BCG str. Mexico	11810210
YP_005171388.1	CDS	BCGMEX_1926c	NC_016804.1	2132820	2133290	R	hypothetical protein	complement(2132820..2133290)	Mycobacterium bovis BCG str. Mexico	11810211
YP_005171389.1	CDS	BCGMEX_1927c	NC_016804.1	2133630	2134277	R	hypothetical protein	complement(2133630..2134277)	Mycobacterium bovis BCG str. Mexico	11810212
YP_005171390.1	CDS	katG	NC_016804.1	2134284	2136506	R	Differs from Rv1908c by 1aa, L463R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; catalase-peroxidase-peroxynitritase T	complement(2134284..2136506)	Mycobacterium bovis BCG str. Mexico	11810213
YP_005171391.1	CDS	furA	NC_016804.1	2136544	2136996	R	Differs from Rv1909c and Mb1944c by 1aa, V46A in BCG Pasteur, BCG Tokyo and BCG Mexico; Ferric uptake regulation protein	complement(2136544..2136996)	Mycobacterium bovis BCG str. Mexico	11810214
YP_005171392.1	CDS	BCGMEX_1930c	NC_016804.1	2137101	2137694	R	hypothetical protein	complement(2137101..2137694)	Mycobacterium bovis BCG str. Mexico	11810215
YP_005171393.1	CDS	lppC	NC_016804.1	2137777	2138382	R	putative lipoprotein	complement(2137777..2138382)	Mycobacterium bovis BCG str. Mexico	11810216
YP_005171394.1	CDS	fadB5	NC_016804.1	2138482	2139486	R	Differs from Rv1912c by 1aa, G328D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative oxidoreductase	complement(2138482..2139486)	Mycobacterium bovis BCG str. Mexico	11810217
YP_005171395.1	CDS	BCGMEX_1933	NC_016804.1	2139586	2140338	D	Differs from Rv1913 and Mb1948 by 1aa, C7R in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2139586..2140338	Mycobacterium bovis BCG str. Mexico	11810218
YP_005171396.1	CDS	BCGMEX_1934c	NC_016804.1	2140316	2140723	R	hypothetical protein	complement(2140316..2140723)	Mycobacterium bovis BCG str. Mexico	11810219
YP_005171397.1	CDS	aceA	NC_016804.1	2140858	2143158	D	In Mycobacterium tuberculosis strain H37Rv, aceAa and aceAb exist as 2 genes. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a single base insertion leads to a single product; putative isocitrate lyase	2140858..2143158	Mycobacterium bovis BCG str. Mexico	11810220
YP_005171398.1	CDS	PPE34	NC_016804.1	2143328	2148835	R	Equivalent to Mb1951c and Rv1917c but differs by several in-frame insertion and deletion events. Differs from Mb1951c by 69 bp insertion, 69 bp deletion and 225 bp deletion. Differs from Rv1917c by deletions of 12 and 138 bp, insertions of 552 and 150 bp, and substitution of 52bp by 628 bp in BCG Pasteur, BCG Tokyo and BCG Mexico; PPE family protein	complement(2143328..2148835)	Mycobacterium bovis BCG str. Mexico	11810221
YP_005171399.1	CDS	PPE35a	NC_016804.1	2150260	2152137	R	In Mycobacterium tuberculosis strain H37Rv, PPE35 exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a single base insertion splits PPE35 into 2 parts, PPE35a and PPE35b. Differs from Mb1953c by 1aa, F565V in Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico.; PPE family protein	complement(2150260..2152137)	Mycobacterium bovis BCG str. Mexico	11810223
YP_005171400.1	CDS	BCGMEX_1939c	NC_016804.1	2152586	2153050	R	hypothetical protein	complement(2152586..2153050)	Mycobacterium bovis BCG str. Mexico	11810224
YP_005171401.1	CDS	BCGMEX_1940	NC_016804.1	2153148	2154011	D	Differs from Rv1920 by 1aa, I130M in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2153148..2154011	Mycobacterium bovis BCG str. Mexico	11810225
YP_005171402.1	CDS	lppF	NC_016804.1	2154049	2155320	R	hypothetical protein	complement(2154049..2155320)	Mycobacterium bovis BCG str. Mexico	11810226
YP_005171403.1	CDS	BCGMEX_1942	NC_016804.1	2155592	2156707	D	putative lipoprotein	2155592..2156707	Mycobacterium bovis BCG str. Mexico	11810227
YP_005171404.1	CDS	lipD	NC_016804.1	2156698	2158038	D	Differs from Rv1923 by 2aa, D73G, N181D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative lipase	2156698..2158038	Mycobacterium bovis BCG str. Mexico	11810228
YP_005171405.1	CDS	BCGMEX_1944c	NC_016804.1	2158075	2158455	R	hypothetical protein	complement(2158075..2158455)	Mycobacterium bovis BCG str. Mexico	11810229
YP_005171406.1	CDS	fadD31	NC_016804.1	2158612	2160474	D	Differs from Rv1925 by 1aa, L190M in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative Acyl-CoA ligase	2158612..2160474	Mycobacterium bovis BCG str. Mexico	11810230
YP_005171407.1	CDS	mpt63	NC_016804.1	2160482	2160961	R	immunogenic protein MPT63	complement(2160482..2160961)	Mycobacterium bovis BCG str. Mexico	11810231
YP_005171408.1	CDS	BCGMEX_1947	NC_016804.1	2161198	2161971	D	hypothetical protein	2161198..2161971	Mycobacterium bovis BCG str. Mexico	11810232
YP_005171409.1	CDS	BCGMEX_1948c	NC_016804.1	2161975	2162742	R	putative short-chain type dehydrogenase/reductase	complement(2161975..2162742)	Mycobacterium bovis BCG str. Mexico	11810233
YP_005171410.1	CDS	BCGMEX_1949c	NC_016804.1	2162787	2163431	R	hypothetical protein	complement(2162787..2163431)	Mycobacterium bovis BCG str. Mexico	11810234
YP_005171411.1	CDS	BCGMEX_1950c	NC_016804.1	2163443	2163967	R	hypothetical protein	complement(2163443..2163967)	Mycobacterium bovis BCG str. Mexico	11810235
YP_005171412.1	CDS	BCGMEX_1951c	NC_016804.1	2163985	2164764	R	transcriptional regulator	complement(2163985..2164764)	Mycobacterium bovis BCG str. Mexico	11810236
YP_005171413.1	CDS	tpx	NC_016804.1	2164897	2165394	D	Thiol peroxidase	2164897..2165394	Mycobacterium bovis BCG str. Mexico	11810237
YP_005171414.1	CDS	fadE18	NC_016804.1	2165391	2166482	R	putative acyl-CoA dehydrogenase	complement(2165391..2166482)	Mycobacterium bovis BCG str. Mexico	11810238
YP_005171415.1	CDS	fadE17	NC_016804.1	2166484	2167713	R	putative acyl-CoA dehydrogenase	complement(2166484..2167713)	Mycobacterium bovis BCG str. Mexico	11810239
YP_005171416.1	CDS	echA13	NC_016804.1	2167728	2168684	R	enoyl-CoA hydratase	complement(2167728..2168684)	Mycobacterium bovis BCG str. Mexico	11810240
YP_005171417.1	CDS	BCGMEX_1956	NC_016804.1	2168909	2170018	D	monooxygenase component A	2168909..2170018	Mycobacterium bovis BCG str. Mexico	11810241
YP_005171418.1	CDS	BCGMEX_1957	NC_016804.1	2170021	2172540	D	Differs from Rv1937 by 1aa, P587A in Mycobacterium bovis BCG Mexico; putative oxygenase	2170021..2172540	Mycobacterium bovis BCG str. Mexico	11810242
YP_005171419.1	CDS	ephB	NC_016804.1	2172552	2173622	D	putative epoxide hydrolase	2172552..2173622	Mycobacterium bovis BCG str. Mexico	11810243
YP_005171420.1	CDS	BCGMEX_1959	NC_016804.1	2173619	2174134	D	In Mycobacterium bovis, a single base deletion leads to a longer product with a different COOH part compared to its homologs in Mycobacterium tuberculosis H37Rv, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico (244 aa versus 171 aa); putative oxidoreductase	2173619..2174134	Mycobacterium bovis BCG str. Mexico	11810244
YP_005171421.1	CDS	ribA1	NC_016804.1	2174131	2175192	D	3,4-dihydroxy-2-butanone 4-phosphate synthase	2174131..2175192	Mycobacterium bovis BCG str. Mexico	11810245
YP_005171422.1	CDS	BCGMEX_1961	NC_016804.1	2175189	2175959	D	putative short-chain type dehydrogenase/reductase	2175189..2175959	Mycobacterium bovis BCG str. Mexico	11810246
YP_005171423.1	CDS	BCGMEX_1962c	NC_016804.1	2176169	2176498	R	hypothetical protein	complement(2176169..2176498)	Mycobacterium bovis BCG str. Mexico	11810247
YP_005171424.1	CDS	BCGMEX_1963c	NC_016804.1	2176495	2176872	R	hypothetical protein	complement(2176495..2176872)	Mycobacterium bovis BCG str. Mexico	11810248
YP_005171425.1	CDS	BCGMEX_1964c	NC_016804.1	2176869	2177459	R	Differs from Rv1944c and Mb1979c by 2aa, E4D, A5T, due to 2 bp substitution ta-cc in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2176869..2177459)	Mycobacterium bovis BCG str. Mexico	11810249
YP_005171426.1	CDS	BCGMEX_1965	NC_016804.1	2177514	2178878	D	Differs from Mb1980 and Rv1945 by substitutions of 44, 29, 2, 10 and 34 bp, or 44, 29, 4, 2, 10 and 34 bp, respectively. Corresponding to 10 aa from Rv1945, L242V, N264H, A267G, F268L, A271G, K285R, I291V, N328H, H417K and P426A, and to 9 aa from Mb1980, N264H, A267G, F268L, A271G, K285R, I291V, N328H, H417K and P426A in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2177514..2178878	Mycobacterium bovis BCG str. Mexico	11810250
YP_005171427.1	CDS	lppG	NC_016804.1	2179033	2179485	R	Differs from Rv1946c by 1aa, T98A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative lipoprotein	complement(2179033..2179485)	Mycobacterium bovis BCG str. Mexico	11810251
YP_005171428.1	CDS	BCGMEX_1967	NC_016804.1	2179549	2179950	D	hypothetical protein	2179549..2179950	Mycobacterium bovis BCG str. Mexico	11810252
YP_005171429.1	CDS	BCGMEX_1968c	NC_016804.1	2180239	2180589	R	Differs from Rv1948c by 1aa, R5G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2180239..2180589)	Mycobacterium bovis BCG str. Mexico	11810253
YP_005171430.1	CDS	BCGMEX_1969c	NC_016804.1	2180600	2181502	R	Differs from Rv1949c by 1aa, L188F in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2180600..2181502)	Mycobacterium bovis BCG str. Mexico	11810254
YP_005171431.1	CDS	BCGMEX_1970c	NC_016804.1	2181523	2181714	R	hypothetical protein	complement(2181523..2181714)	Mycobacterium bovis BCG str. Mexico	11810255
YP_005171432.1	CDS	BCGMEX_1971c	NC_016804.1	2181715	2182011	R	hypothetical protein	complement(2181715..2182011)	Mycobacterium bovis BCG str. Mexico	11810256
YP_005171433.1	CDS	BCGMEX_1972	NC_016804.1	2182251	2182466	D	hypothetical protein	2182251..2182466	Mycobacterium bovis BCG str. Mexico	11810257
YP_005171434.1	CDS	BCGMEX_1973	NC_016804.1	2182463	2182774	D	hypothetical protein	2182463..2182774	Mycobacterium bovis BCG str. Mexico	11810258
YP_005171435.1	CDS	BCGMEX_1974c	NC_016804.1	2182748	2183269	R	Differs from Rv1954c by 1aa, R150H in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2182748..2183269)	Mycobacterium bovis BCG str. Mexico	11810259
YP_005171436.1	CDS	BCGMEX_1975	NC_016804.1	2183109	2183621	D	hypothetical protein	2183109..2183621	Mycobacterium bovis BCG str. Mexico	11810260
YP_005171437.1	CDS	BCGMEX_1976	NC_016804.1	2183663	2184112	D	putative transciptional regulatory protein	2183663..2184112	Mycobacterium bovis BCG str. Mexico	11810261
YP_005171438.1	CDS	BCGMEX_1977	NC_016804.1	2184109	2184654	D	hypothetical protein	2184109..2184654	Mycobacterium bovis BCG str. Mexico	11810262
YP_005171439.1	CDS	BCGMEX_1978c	NC_016804.1	2184543	2185157	R	hypothetical protein	complement(2184543..2185157)	Mycobacterium bovis BCG str. Mexico	11810263
YP_005171440.1	CDS	BCGMEX_1979c	NC_016804.1	2185206	2185502	R	putative plasmid stabilization protein ParE	complement(2185206..2185502)	Mycobacterium bovis BCG str. Mexico	11810264
YP_005171441.1	CDS	BCGMEX_1980c	NC_016804.1	2185499	2185750	R	hypothetical protein	complement(2185499..2185750)	Mycobacterium bovis BCG str. Mexico	11810265
YP_005171442.1	CDS	BCGMEX_1981	NC_016804.1	2185737	2186231	D	hypothetical protein	2185737..2186231	Mycobacterium bovis BCG str. Mexico	11810266
YP_005171443.1	CDS	BCGMEX_1982c	NC_016804.1	2186391	2186798	R	hypothetical protein	complement(2186391..2186798)	Mycobacterium bovis BCG str. Mexico	11810267
YP_005171444.1	CDS	BCGMEX_1983c	NC_016804.1	2186802	2187074	R	hypothetical protein	complement(2186802..2187074)	Mycobacterium bovis BCG str. Mexico	11810268
YP_005171445.1	CDS	BCGMEX_1984c	NC_016804.1	2187107	2188327	R	TetR-family transcriptional repressor mce3R	complement(2187107..2188327)	Mycobacterium bovis BCG str. Mexico	11810269
YP_005171446.1	CDS	yrbE3A	NC_016804.1	2189226	2189630	D	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur,BCG Tokyo and BCG Mexico, a large deletion of 12719 bp (RD7) leads to the loss of the COOH part of Rv1964|yrbE3A, the entire mce3 operon and the following genes up to Rv1978, compared to Mycobacterium tuberculosis strain H37Rv. Follow by a second deletion of 10287bp, RD2 region (only in Mycobacterium bovis BCG Pasteur and BCG Mexico), which removes genes Rv1979c-Rv1787 and merges truncated part of Rv1978 and Rv1988 compared to Mycobacterium tuberculosis strain H37Rv; putative integral membrane protein	2189226..2189630	Mycobacterium bovis BCG str. Mexico	11810270
YP_005171447.1	CDS	BCGMEX_1986	NC_016804.1	2189715	2190239	D	putative methyltransferase	2189715..2190239	Mycobacterium bovis BCG str. Mexico	11810271
YP_005171448.1	CDS	BCGMEX_1987c	NC_016804.1	2190759	2191319	R	hypothetical protein	complement(2190759..2191319)	Mycobacterium bovis BCG str. Mexico	11810272
YP_005171449.1	CDS	BCGMEX_1988c	NC_016804.1	2191316	2191657	R	transcriptional regulator	complement(2191316..2191657)	Mycobacterium bovis BCG str. Mexico	11810273
YP_005171450.1	CDS	BCGMEX_1989c	NC_016804.1	2191901	2192236	R	putative dehydrogenase	complement(2191901..2192236)	Mycobacterium bovis BCG str. Mexico	11810274
YP_005171451.1	CDS	BCGMEX_1990c	NC_016804.1	2192325	2192666	R	hypothetical protein	complement(2192325..2192666)	Mycobacterium bovis BCG str. Mexico	11810275
YP_005171452.1	CDS	ctpG	NC_016804.1	2193011	2195326	R	putative cation-transporting P-type ATPase G	complement(2193011..2195326)	Mycobacterium bovis BCG str. Mexico	11810276
YP_005171453.1	CDS	BCGMEX_1992c	NC_016804.1	2195323	2195595	R	hypothetical protein	complement(2195323..2195595)	Mycobacterium bovis BCG str. Mexico	11810277
YP_005171454.1	CDS	BCGMEX_1993c	NC_016804.1	2195648	2196004	R	ArsR family transcriptional regulator	complement(2195648..2196004)	Mycobacterium bovis BCG str. Mexico	11810278
YP_005171455.1	CDS	BCGMEX_1994	NC_016804.1	2196161	2196928	D	hypothetical protein	2196161..2196928	Mycobacterium bovis BCG str. Mexico	11810279
YP_005171456.1	CDS	BCGMEX_1995	NC_016804.1	2197024	2197977	D	Universal stress protein family	2197024..2197977	Mycobacterium bovis BCG str. Mexico	11810280
YP_005171457.1	CDS	ctpF	NC_016804.1	2198179	2200896	D	Differs from Rv1997 and Mb2020 by 1aa, D138E in BCG Pasteur, BCG Tokyo and BCG Mexico; putative metal cation transporter P-type atpase A	2198179..2200896	Mycobacterium bovis BCG str. Mexico	11810281
YP_005171458.1	CDS	BCGMEX_1997c	NC_016804.1	2200965	2201741	R	Differs from Rv1998c by 1aa, R230S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2200965..2201741)	Mycobacterium bovis BCG str. Mexico	11810282
YP_005171459.1	CDS	BCGMEX_1998c	NC_016804.1	2201836	2203158	R	putative transporter	complement(2201836..2203158)	Mycobacterium bovis BCG str. Mexico	11810283
YP_005171460.1	CDS	BCGMEX_1999	NC_016804.1	2203229	2204842	D	hypothetical protein	2203229..2204842	Mycobacterium bovis BCG str. Mexico	11810284
YP_005171461.1	CDS	BCGMEX_2000	NC_016804.1	2204852	2205604	D	Differs from Rv2001 by 1aa, H113R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2204852..2205604	Mycobacterium bovis BCG str. Mexico	11810285
YP_005171462.1	CDS	fabG3	NC_016804.1	2205680	2206462	D	putative 3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase	2205680..2206462	Mycobacterium bovis BCG str. Mexico	11810286
YP_005171463.1	CDS	BCGMEX_2002c	NC_016804.1	2206583	2207440	R	hypothetical protein	complement(2206583..2207440)	Mycobacterium bovis BCG str. Mexico	11810287
YP_005171464.1	CDS	BCGMEX_2003c	NC_016804.1	2207498	2208994	R	hypothetical protein	complement(2207498..2208994)	Mycobacterium bovis BCG str. Mexico	11810288
YP_005171465.1	CDS	BCGMEX_2004c	NC_016804.1	2209016	2209903	R	hypothetical protein	complement(2209016..2209903)	Mycobacterium bovis BCG str. Mexico	11810289
YP_005171466.1	CDS	otsB1	NC_016804.1	2210022	2214005	D	Differs from Rv2006 and Mb2029 by 1aa, S80G and L1245P, respectively, in BCG Pasteur, BCG Tokyo and BCG Mexico; putative trehalose-6-phosphate phosphatase	2210022..2214005	Mycobacterium bovis BCG str. Mexico	11810290
YP_005171467.1	CDS	fdxA	NC_016804.1	2214104	2214448	R	putative ferredoxin	complement(2214104..2214448)	Mycobacterium bovis BCG str. Mexico	11810291
YP_005171468.1	CDS	BCGMEX_2007c	NC_016804.1	2214637	2215962	R	hypothetical protein	complement(2214637..2215962)	Mycobacterium bovis BCG str. Mexico	11810292
YP_005171469.1	CDS	BCGMEX_2008	NC_016804.1	2216050	2216292	D	hypothetical protein	2216050..2216292	Mycobacterium bovis BCG str. Mexico	11810293
YP_005171470.1	CDS	BCGMEX_2009	NC_016804.1	2216293	2216691	D	hypothetical protein	2216293..2216691	Mycobacterium bovis BCG str. Mexico	11810294
YP_005171471.1	CDS	BCGMEX_2010c	NC_016804.1	2216874	2217305	R	hypothetical protein	complement(2216874..2217305)	Mycobacterium bovis BCG str. Mexico	11810295
YP_005171472.1	CDS	BCGMEX_2011	NC_016804.1	2217346	2217840	D	hypothetical protein	2217346..2217840	Mycobacterium bovis BCG str. Mexico	11810296
YP_005171473.1	CDS	BCGMEX_2012	NC_016804.1	2217837	2218085	D	hypothetical protein	2217837..2218085	Mycobacterium bovis BCG str. Mexico	11810297
YP_005171474.1	CDS	BCGMEX_2013	NC_016804.1	2218544	2219161	D	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a single base transition at the 5' start, leads to a longer product with a different NH2 part compared to its homolog in Mycobacterium tuberculosis strain H37Rv (206 aa versus 159 aa); putative transposase	2218544..2219161	Mycobacterium bovis BCG str. Mexico	11810298
YP_005171475.1	CDS	BCGMEX_2014	NC_016804.1	2219115	2219705	D	similar to Mb2037 including extra 5 aa at C-terminus compared to Rv2014 in Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transposase	2219115..2219705	Mycobacterium bovis BCG str. Mexico	11810299
YP_005171476.1	CDS	BCGMEX_2015c	NC_016804.1	2219833	2221089	R	Differs from Mb2038c by 1aa S59L in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2219833..2221089)	Mycobacterium bovis BCG str. Mexico	11810300
YP_005171477.1	CDS	BCGMEX_2016	NC_016804.1	2221443	2222018	D	hypothetical protein	2221443..2222018	Mycobacterium bovis BCG str. Mexico	11810301
YP_005171478.1	CDS	BCGMEX_2017	NC_016804.1	2222015	2223055	D	Differs from Rv2017 by 1aa, E262A in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative regulatory protein	2222015..2223055	Mycobacterium bovis BCG str. Mexico	11810302
YP_005171479.1	CDS	BCGMEX_2018	NC_016804.1	2223297	2224016	D	Differs from Rv2018 by 1aa, G116D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2223297..2224016	Mycobacterium bovis BCG str. Mexico	11810303
YP_005171480.1	CDS	BCGMEX_2019	NC_016804.1	2224006	2224422	D	hypothetical protein	2224006..2224422	Mycobacterium bovis BCG str. Mexico	11810304
YP_005171481.1	CDS	BCGMEX_2020c	NC_016804.1	2224438	2224737	R	hypothetical protein	complement(2224438..2224737)	Mycobacterium bovis BCG str. Mexico	11810305
YP_005171482.1	CDS	BCGMEX_2021c	NC_016804.1	2224822	2225127	R	putative transcriptional regulator	complement(2224822..2225127)	Mycobacterium bovis BCG str. Mexico	11810306
YP_005171483.1	CDS	BCGMEX_2022c	NC_016804.1	2225136	2225741	R	hypothetical protein	complement(2225136..2225741)	Mycobacterium bovis BCG str. Mexico	11810307
YP_005171484.1	CDS	BCGMEX_2023c	NC_016804.1	2225766	2226125	R	hypothetical protein	complement(2225766..2226125)	Mycobacterium bovis BCG str. Mexico	11810308
YP_005171485.1	CDS	BCGMEX_2024c	NC_016804.1	2226285	2226938	R	Belongs to the RvD1 region. Absent in Mycobacterium tuberculosis strain H37Rv; hypothetical protein	complement(2226285..2226938)	Mycobacterium bovis BCG str. Mexico	11810309
YP_005171486.1	CDS	BCGMEX_2025c	NC_016804.1	2226914	2227150	R	hypothetical protein	complement(2226914..2227150)	Mycobacterium bovis BCG str. Mexico	11810310
YP_005171487.1	CDS	BCGMEX_2026c	NC_016804.1	2227357	2228253	R	Belongs to the RvD1 region. Absent in Mycobacterium tuberculosis strain H37Rv. Differs from Mb2048c by 1aa, E139K in Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2227357..2228253)	Mycobacterium bovis BCG str. Mexico	11810311
YP_005171488.1	CDS	BCGMEX_2027c	NC_016804.1	2228437	2233257	R	In Mycobacterium tuberculosis strain H37Rv, a large deletion region (RvD1) exists in between Rv2023 and Rv2024. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 5000 bp insertion at this region results in Mb2049c being a much larger product with a different COOH part (1606 aa versus 515 aa), and in 2 extra genes, Mb2046c and Mb2047c. Differs from N-terminal part of Rv2024c (truncated by RvD1) by 3aa, R47W, G154D, C289R and Mb2049c by 1aa, F341V in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2228437..2233257)	Mycobacterium bovis BCG str. Mexico	11810312
YP_005171489.1	CDS	BCGMEX_2028c	NC_016804.1	2233767	2234765	R	cation efflux system protein	complement(2233767..2234765)	Mycobacterium bovis BCG str. Mexico	11810313
YP_005171490.1	CDS	BCGMEX_2029c	NC_016804.1	2234880	2235764	R	hypothetical protein	complement(2234880..2235764)	Mycobacterium bovis BCG str. Mexico	11810314
YP_005171491.1	CDS	BCGMEX_2030c	NC_016804.1	2235804	2237525	R	Differs from Rv2027c by 1aa, V15L in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; histidine kinase response regulator	complement(2235804..2237525)	Mycobacterium bovis BCG str. Mexico	11810315
YP_005171492.1	CDS	BCGMEX_2031c	NC_016804.1	2237586	2238425	R	hypothetical protein	complement(2237586..2238425)	Mycobacterium bovis BCG str. Mexico	11810316
YP_005171493.1	CDS	pfkB	NC_016804.1	2238422	2239441	R	putative phosphofructokinase	complement(2238422..2239441)	Mycobacterium bovis BCG str. Mexico	11810317
YP_005171494.1	CDS	BCGMEX_2033c	NC_016804.1	2239458	2241503	R	In Mycobacterium tuberculosis strain H37Rv, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, Rv2030c exists as a single gene. In Mycobacterium bovis, a frameshift due to a single base deletion splits Rv2030c into 2 parts, Mb2055c and Mb2056c; hypothetical protein	complement(2239458..2241503)	Mycobacterium bovis BCG str. Mexico	11810318
YP_005171495.1	CDS	hspX	NC_016804.1	2241515	2241949	R	heat shock protein	complement(2241515..2241949)	Mycobacterium bovis BCG str. Mexico	11810319
YP_005171496.1	CDS	BCGMEX_2035	NC_016804.1	2242146	2243141	D	Differs from Rv2032 by 1aa, L318P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2242146..2243141	Mycobacterium bovis BCG str. Mexico	11810320
YP_005171497.1	CDS	BCGMEX_2036c	NC_016804.1	2243257	2244099	R	hypothetical protein	complement(2243257..2244099)	Mycobacterium bovis BCG str. Mexico	11810321
YP_005171498.1	CDS	BCGMEX_2037	NC_016804.1	2244311	2244634	D	putative ArsR-type repressor protein	2244311..2244634	Mycobacterium bovis BCG str. Mexico	11810322
YP_005171499.1	CDS	BCGMEX_2038	NC_016804.1	2244631	2245119	D	hypothetical protein	2244631..2245119	Mycobacterium bovis BCG str. Mexico	11810323
YP_005171500.1	CDS	BCGMEX_2039	NC_016804.1	2245116	2245757	D	Differs from Rv2036 by 1aa, V93A due to 2bp substitution in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2245116..2245757	Mycobacterium bovis BCG str. Mexico	11810324
YP_005171501.1	CDS	BCGMEX_2040c	NC_016804.1	2245764	2246738	R	Differs from Rv2037c by 1aa, Y312C in Mycobacterium tuberclosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	complement(2245764..2246738)	Mycobacterium bovis BCG str. Mexico	11810325
YP_005171502.1	CDS	BCGMEX_2041c	NC_016804.1	2246740	2247813	R	putative sugar-transport ATP-binding protein ABC transporter	complement(2246740..2247813)	Mycobacterium bovis BCG str. Mexico	11810326
YP_005171503.1	CDS	BCGMEX_2042c	NC_016804.1	2247816	2248658	R	Differs from Rv2039c by 1aa, F131V in Mycobacterium tuberclosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative sugar-transport integral membrane protein ABC transporter	complement(2247816..2248658)	Mycobacterium bovis BCG str. Mexico	11810327
YP_005171504.1	CDS	BCGMEX_2043c	NC_016804.1	2248645	2249547	R	putative sugar-transport integral membrane protein ABC transporter	complement(2248645..2249547)	Mycobacterium bovis BCG str. Mexico	11810328
YP_005171505.1	CDS	BCGMEX_2044c	NC_016804.1	2249544	2250863	R	Differs from Mb2067c by 1aa, A122V in BCG Pasteur and BCG Mexico; putative sugar-binding lipoprotein	complement(2249544..2250863)	Mycobacterium bovis BCG str. Mexico	11810329
YP_005171506.1	CDS	BCGMEX_2045c	NC_016804.1	2250901	2251698	R	hypothetical protein	complement(2250901..2251698)	Mycobacterium bovis BCG str. Mexico	11810330
YP_005171507.1	CDS	pncA	NC_016804.1	2251698	2252258	R	Differs from Rv2043c by 1aa, D57H in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Pyrazinamidase/Nicotinamidase	complement(2251698..2252258)	Mycobacterium bovis BCG str. Mexico	11810331
YP_005171508.1	CDS	BCGMEX_2047c	NC_016804.1	2252299	2252616	R	hypothetical protein	complement(2252299..2252616)	Mycobacterium bovis BCG str. Mexico	11810332
YP_005171509.1	CDS	lipT	NC_016804.1	2252702	2254237	R	putative carboxylesterase	complement(2252702..2254237)	Mycobacterium bovis BCG str. Mexico	11810333
YP_005171510.1	CDS	lppI	NC_016804.1	2254286	2254942	D	Differs from Rv2046 by 1aa, P17S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative lipoprotein	2254286..2254942	Mycobacterium bovis BCG str. Mexico	11810334
YP_005171511.1	CDS	BCGMEX_2050c	NC_016804.1	2254979	2257543	R	hypothetical protein	complement(2254979..2257543)	Mycobacterium bovis BCG str. Mexico	11810335
YP_005171512.1	CDS	pks12	NC_016804.1	2257548	2270003	R	Differs from Mb2074c and Rv2048c in several positions due to various substitutions, transitions and transversions in BCG Pasteur,BCG Tokyo and BCG Mexico; polyketide synthase	complement(2257548..2270003)	Mycobacterium bovis BCG str. Mexico	11810336
YP_005171513.1	CDS	BCGMEX_2052c	NC_016804.1	2270310	2270534	R	hypothetical protein	complement(2270310..2270534)	Mycobacterium bovis BCG str. Mexico	11810337
YP_005171514.1	CDS	BCGMEX_2053	NC_016804.1	2270838	2271173	D	hypothetical protein	2270838..2271173	Mycobacterium bovis BCG str. Mexico	11810338
YP_005171515.1	CDS	ppm1	NC_016804.1	2271148	2273772	R	polyprenol-monophosphomannose synthase	complement(2271148..2273772)	Mycobacterium bovis BCG str. Mexico	11810339
YP_005171516.1	CDS	BCGMEX_2055c	NC_016804.1	2273930	2275534	R	hypothetical protein	complement(2273930..2275534)	Mycobacterium bovis BCG str. Mexico	11810340
YP_005171517.1	CDS	fxsA	NC_016804.1	2275539	2276066	R	putative transmembrane protein	complement(2275539..2276066)	Mycobacterium bovis BCG str. Mexico	11810341
YP_005171518.1	CDS	BCGMEX_2057	NC_016804.1	2276142	2276855	D	hypothetical protein	2276142..2276855	Mycobacterium bovis BCG str. Mexico	11810342
YP_005171519.1	CDS	rpsR2	NC_016804.1	2277104	2277370	R	30S ribosomal protein S18	complement(2277104..2277370)	Mycobacterium bovis BCG str. Mexico	11810343
YP_005171520.1	CDS	rpsN2	NC_016804.1	2277371	2277676	R	30S ribosomal protein S14	complement(2277371..2277676)	Mycobacterium bovis BCG str. Mexico	11810344
YP_005171521.1	CDS	rpmG1	NC_016804.1	2277678	2277842	R	50S ribosomal protein L33	complement(2277678..2277842)	Mycobacterium bovis BCG str. Mexico	11810345
YP_005171522.1	CDS	rpmB2	NC_016804.1	2277842	2278078	R	50S ribosomal protein L28	complement(2277842..2278078)	Mycobacterium bovis BCG str. Mexico	11810346
YP_005171523.1	CDS	BCGMEX_2062	NC_016804.1	2278191	2279726	D	hypothetical protein	2278191..2279726	Mycobacterium bovis BCG str. Mexico	11810347
YP_005171524.1	CDS	BCGMEX_2063c	NC_016804.1	2279698	2280102	R	hypothetical protein	complement(2279698..2280102)	Mycobacterium bovis BCG str. Mexico	11810348
YP_005171525.1	CDS	cobN	NC_016804.1	2280186	2283770	R	Differs from Rv2062c by 2aa, A75V, C688R and from Mb2088c by 1aa, C688R in BCG Pasteur, BCG Tokyo and BCG Mexico; putative component of cobalt chelatase involved in B12 biosynthesis	complement(2280186..2283770)	Mycobacterium bovis BCG str. Mexico	11810349
YP_005171526.1	CDS	BCGMEX_2065	NC_016804.1	2283848	2284081	D	DNA-binding protein, CopG family	2283848..2284081	Mycobacterium bovis BCG str. Mexico	11810350
YP_005171527.1	CDS	BCGMEX_2066	NC_016804.1	2284074	2284484	D	hypothetical protein	2284074..2284484	Mycobacterium bovis BCG str. Mexico	11810351
YP_005171528.1	CDS	cobG	NC_016804.1	2284468	2285559	D	putative cobalamin biosynthesis protein	2284468..2285559	Mycobacterium bovis BCG str. Mexico	11810352
YP_005171529.1	CDS	cobH	NC_016804.1	2285569	2286195	D	Cobalt-precorrin-8x methylmutase	2285569..2286195	Mycobacterium bovis BCG str. Mexico	11810353
YP_005171530.1	CDS	cobI	NC_016804.1	2286192	2287718	D	putative CobI-CobJ fusion protein (cobalt-precorrin-2 C20-methyltransferase/ Cobalt-precorrin-3b C17-methyltransferase)	2286192..2287718	Mycobacterium bovis BCG str. Mexico	11810354
YP_005171531.1	CDS	BCGMEX_2070c	NC_016804.1	2287664	2288887	R	hypothetical protein	complement(2287664..2288887)	Mycobacterium bovis BCG str. Mexico	11810355
YP_005171532.1	CDS	blaC	NC_016804.1	2288903	2289826	R	beta-lactamase class A	complement(2288903..2289826)	Mycobacterium bovis BCG str. Mexico	11810356
YP_005171533.1	CDS	sigC	NC_016804.1	2289961	2290518	D	RNA polymerase sigma factor	2289961..2290518	Mycobacterium bovis BCG str. Mexico	11810357
YP_005171534.1	CDS	cobK	NC_016804.1	2290508	2291203	R	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a single base insertion leads to a shorter product with a different NH2 part compared to its homolog in Mycobacterium tuberculosis strain H37Rv (231 aa versus 244 aa); Cobalt-precorrin-6x reductase	complement(2290508..2291203)	Mycobacterium bovis BCG str. Mexico	11810358
YP_005171535.1	CDS	cobM	NC_016804.1	2291240	2291995	R	Differs from Rv2071c by 1aa, M145I in BCG Pasteur, BCG Tokyo and BCG Mexico; putative cobalt-precorrin-4 C11-methyltransferase	complement(2291240..2291995)	Mycobacterium bovis BCG str. Mexico	11810359
YP_005171536.1	CDS	cobLb	NC_016804.1	2291992	2292876	R	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a large 2029 bp deletion (RD9) leads to the loss of the NH2 part of cobL, the entire Rv2073 and Rv2074, and the COOH part of Mb2100c. In addition, while cobL exists as a single gene in Mycobacterium tuberculosis strain H37Rv, in Mycobacterium bovis a frameshift due to a single base insertion splits cobL into 2 parts, cobLa and cobLb; putative cobalt-precorrin-6y methyltransferase	complement(2291992..2292876)	Mycobacterium bovis BCG str. Mexico	11810360
YP_005171537.1	CDS	cobLa	NC_016804.1	2292818	2293006	R	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a large 2029 bp deletion (RD9) leads to the loss of the NH2 part of cobL, the entire Rv2073 and Rv2074, and the COOH part of Mb2100c. In addition, while cobL exists as a single gene in Mycobacterium tuberculosis strain H37Rv, in Mycobacterium bovis a frameshift due to a single base insertion splits cobL into 2 parts, cobLa and cobLb; putative precorrin-6y methyltransferase	complement(2292818..2293006)	Mycobacterium bovis BCG str. Mexico	11810361
YP_005171538.1	CDS	BCGMEX_2077c	NC_016804.1	2293081	2293869	R	In Mycobacterium bovis AF2122/97, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a large 2029 bp deletion(RD9) leads to the loss of the COOH part of Mb2100c, the entire Rv2074 and Rv2073, and the NH2 part of cobL compared to its homolog in Mycobacterium tuberculosis strain H37Rv; putative exported or envelope protein	complement(2293081..2293869)	Mycobacterium bovis BCG str. Mexico	11810362
YP_005171539.1	CDS	BCGMEX_2078c	NC_016804.1	2294027	2294278	R	hypothetical protein	complement(2294027..2294278)	Mycobacterium bovis BCG str. Mexico	11810363
YP_005171540.1	CDS	BCGMEX_2079c	NC_016804.1	2294313	2295284	R	putative transmembrane protein	complement(2294313..2295284)	Mycobacterium bovis BCG str. Mexico	11810364
YP_005171541.1	CDS	BCGMEX_2080c	NC_016804.1	2295285	2295584	R	hypothetical protein	complement(2295285..2295584)	Mycobacterium bovis BCG str. Mexico	11810365
YP_005171542.1	CDS	BCGMEX_2081	NC_016804.1	2296049	2296363	D	Differs from Rv2078 by 1aa, G6E in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2296049..2296363	Mycobacterium bovis BCG str. Mexico	11810366
YP_005171543.1	CDS	BCGMEX_2082	NC_016804.1	2296345	2298315	D	Differs from Rv2079 by 2aa, C47Y, L216P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2296345..2298315	Mycobacterium bovis BCG str. Mexico	11810367
YP_005171544.1	CDS	lppJ	NC_016804.1	2298296	2298859	D	Differs from Rv2080 by 1aa, A23V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative lipoprotein	2298296..2298859	Mycobacterium bovis BCG str. Mexico	11810368
YP_005171545.1	CDS	BCGMEX_2084c	NC_016804.1	2298895	2299506	R	putative transmembrane protein	complement(2298895..2299506)	Mycobacterium bovis BCG str. Mexico	11810369
YP_005171546.1	CDS	BCGMEX_2085	NC_016804.1	2299710	2301797	D	Differs from Mb2108 (721 aa) and from Rv2082 (721aa) by 26 codon in-frame deletion and from Rv2082 by 2aa, A183T, R612L in BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	2299710..2301797	Mycobacterium bovis BCG str. Mexico	11810370
YP_005171547.1	CDS	BCGMEX_2086	NC_016804.1	2301794	2302738	D	Differs from Rv2083 by 1aa, V256L in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2301794..2302738	Mycobacterium bovis BCG str. Mexico	11810371
YP_005171548.1	CDS	BCGMEX_2087	NC_016804.1	2302731	2303726	D	In Mycobacterium tuberculosis strain H37Rv, Rv2084 exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to an 11bp insertion, splits Rv2084 into 2 parts; hypothetical protein	2302731..2303726	Mycobacterium bovis BCG str. Mexico	11810372
YP_005171549.1	CDS	BCGMEX_2089	NC_016804.1	2303961	2304266	D	hypothetical protein	2303961..2304266	Mycobacterium bovis BCG str. Mexico	11810374
YP_005171550.1	CDS	BCGMEX_2090	NC_016804.1	2304245	2304850	D	hypothetical protein	2304245..2304850	Mycobacterium bovis BCG str. Mexico	11810375
YP_005171551.1	CDS	BCGMEX_2091	NC_016804.1	2304928	2305158	D	hypothetical protein	2304928..2305158	Mycobacterium bovis BCG str. Mexico	11810376
YP_005171552.1	CDS	pknJ	NC_016804.1	2305345	2307114	D	Transmembrane serine/threonine protein kinase J	2305345..2307114	Mycobacterium bovis BCG str. Mexico	11810377
YP_005171553.1	CDS	pepE	NC_016804.1	2307131	2308258	R	putative Xaa-Pro dipeptidase	complement(2307131..2308258)	Mycobacterium bovis BCG str. Mexico	11810378
YP_005171554.1	CDS	BCGMEX_2094	NC_016804.1	2308307	2309374	D	5'-3' exonuclease	2308307..2309374	Mycobacterium bovis BCG str. Mexico	11810379
YP_005171555.1	CDS	BCGMEX_2095c	NC_016804.1	2309378	2310112	R	hypothetical protein	complement(2309378..2310112)	Mycobacterium bovis BCG str. Mexico	11810380
YP_005171556.1	CDS	helY	NC_016804.1	2310154	2312874	R	Differs from Rv2092c by 1aa, M178T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative ATP-dependent DNA helicase	complement(2310154..2312874)	Mycobacterium bovis BCG str. Mexico	11810381
YP_005171557.1	CDS	tatC	NC_016804.1	2312923	2313849	R	Sec-independent protein translocase transmembrane protein	complement(2312923..2313849)	Mycobacterium bovis BCG str. Mexico	11810382
YP_005171558.1	CDS	tatA	NC_016804.1	2313866	2314117	R	Sec-independent protein translocase protein tatA/E-like protein	complement(2313866..2314117)	Mycobacterium bovis BCG str. Mexico	11810383
YP_005171559.1	CDS	pafC	NC_016804.1	2314185	2315135	R	Differs from Mb2122c by 1aa, A267V in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; proteasome accessory factor C	complement(2314185..2315135)	Mycobacterium bovis BCG str. Mexico	11810384
YP_005171560.1	CDS	pafB	NC_016804.1	2315132	2316130	R	protein pafB	complement(2315132..2316130)	Mycobacterium bovis BCG str. Mexico	11810385
YP_005171561.1	CDS	pafA	NC_016804.1	2316139	2317497	R	pup--protein ligase	complement(2316139..2317497)	Mycobacterium bovis BCG str. Mexico	11810386
YP_005171562.1	CDS	PE_PGRS36	NC_016804.1	2317549	2319024	R	In Mycobacterium tuberculosis strain H37Rv, PE_PGRS36 and PE21 exist as 2 genes. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a single base insertion leads to a single product more similar to PE_PGRS36. There is also a 3 bp in-frame deletion; PE-PGRS family protein	complement(2317549..2319024)	Mycobacterium bovis BCG str. Mexico	11810387
YP_005171563.1	CDS	BCGMEX_2103	NC_016804.1	2319207	2320859	D	hypothetical protein	2319207..2320859	Mycobacterium bovis BCG str. Mexico	11810388
YP_005171564.1	CDS	helZ	NC_016804.1	2321058	2324099	D	Differs from Rv2101 by 3aa, L462M, Q601P, S652A in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; putative helicase	2321058..2324099	Mycobacterium bovis BCG str. Mexico	11810389
YP_005171565.1	CDS	BCGMEX_2105	NC_016804.1	2324209	2324925	D	hypothetical protein	2324209..2324925	Mycobacterium bovis BCG str. Mexico	11810390
YP_005171566.1	CDS	BCGMEX_2106c	NC_016804.1	2324904	2325338	R	hypothetical protein	complement(2324904..2325338)	Mycobacterium bovis BCG str. Mexico	11810391
YP_005171567.1	CDS	BCGMEX_2107c	NC_016804.1	2325345	2325599	R	hypothetical protein	complement(2325345..2325599)	Mycobacterium bovis BCG str. Mexico	11810392
YP_005171568.1	CDS	BCGMEX_2108c	NC_016804.1	2325615	2325872	R	hypothetical protein	complement(2325615..2325872)	Mycobacterium bovis BCG str. Mexico	11810393
YP_005171569.1	CDS	PE22	NC_016804.1	2326819	2327115	D	PE family protein	2326819..2327115	Mycobacterium bovis BCG str. Mexico	11810394
YP_005171570.1	CDS	PPE36	NC_016804.1	2327171	2327902	D	PPE family protein	2327171..2327902	Mycobacterium bovis BCG str. Mexico	11810395
YP_005171571.1	CDS	prcA	NC_016804.1	2328442	2329188	R	Differs from Rv2109c by 2aa, P135R, G182R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; proteasome subunit alpha	complement(2328442..2329188)	Mycobacterium bovis BCG str. Mexico	11810396
YP_005171572.1	CDS	prcB	NC_016804.1	2329185	2330060	R	proteasome subunit beta	complement(2329185..2330060)	Mycobacterium bovis BCG str. Mexico	11810397
YP_005171573.1	CDS	BCGMEX_2113c	NC_016804.1	2330057	2330251	R	ubiquitin-like protein Pup	complement(2330057..2330251)	Mycobacterium bovis BCG str. Mexico	11810398
YP_005171574.1	CDS	BCGMEX_2114c	NC_016804.1	2330364	2331971	R	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 57 bp in-frame deletion at the NH2 part, leads to a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (535 aa versus 554 aa); hypothetical protein	complement(2330364..2331971)	Mycobacterium bovis BCG str. Mexico	11810399
YP_005171575.1	CDS	BCGMEX_2115	NC_016804.1	2332032	2333225	D	Differs from Mb2137 by 1aa, S278L, and from Rv2113 by 1aa, P207T in BCG Pasteur, BCG Tokyo and BCG Mexico; putative integral membrane protein	2332032..2333225	Mycobacterium bovis BCG str. Mexico	11810400
YP_005171576.1	CDS	BCGMEX_2116	NC_016804.1	2333236	2333859	D	hypothetical protein	2333236..2333859	Mycobacterium bovis BCG str. Mexico	11810401
YP_005171577.1	CDS	BCGMEX_2117c	NC_016804.1	2333863	2335692	R	proteasome-associated ATPase	complement(2333863..2335692)	Mycobacterium bovis BCG str. Mexico	11810402
YP_005171578.1	CDS	lppK	NC_016804.1	2335973	2336542	D	putative lipoprotein	2335973..2336542	Mycobacterium bovis BCG str. Mexico	11810403
YP_005171579.1	CDS	BCGMEX_2119	NC_016804.1	2336550	2336843	D	hypothetical protein	2336550..2336843	Mycobacterium bovis BCG str. Mexico	11810404
YP_005171580.1	CDS	BCGMEX_2120c	NC_016804.1	2336872	2337714	R	putative RNA methyltransferase	complement(2336872..2337714)	Mycobacterium bovis BCG str. Mexico	11810405
YP_005171581.1	CDS	BCGMEX_2121	NC_016804.1	2337788	2338624	D	hypothetical protein	2337788..2338624	Mycobacterium bovis BCG str. Mexico	11810406
YP_005171582.1	CDS	BCGMEX_2122c	NC_016804.1	2338647	2339129	R	putative integral membrane protein	complement(2338647..2339129)	Mycobacterium bovis BCG str. Mexico	11810407
YP_005171583.1	CDS	hisG	NC_016804.1	2339208	2340062	R	ATP phosphoribosyltransferase	complement(2339208..2340062)	Mycobacterium bovis BCG str. Mexico	11810408
YP_005171584.1	CDS	hisE	NC_016804.1	2340065	2340346	R	phosphoribosyl-ATP pyrophosphatase	complement(2340065..2340346)	Mycobacterium bovis BCG str. Mexico	11810409
YP_005171585.1	CDS	PPE37	NC_016804.1	2340473	2341867	D	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 27 bp in-frame deletion leads to a slightly shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (464 aa versus 473 aa); PPE family protein	2340473..2341867	Mycobacterium bovis BCG str. Mexico	11810410
YP_005171586.1	CDS	metH	NC_016804.1	2341864	2345442	R	Differs from Rv2124c by 1aa, V752I in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; methionine synthase, vitamin-B12 dependent isozyme, MS; 5-methyltetrahydrofolate--homocysteine methyltransferase	complement(2341864..2345442)	Mycobacterium bovis BCG str. Mexico	11810411
YP_005171587.1	CDS	BCGMEX_2127	NC_016804.1	2345668	2346546	D	Differs from Rv2125 by 1aa, S33G in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2345668..2346546	Mycobacterium bovis BCG str. Mexico	11810412
YP_005171588.1	CDS	PE_PGRS37	NC_016804.1	2346577	2347347	R	PE PGRS family protein	complement(2346577..2347347)	Mycobacterium bovis BCG str. Mexico	11810413
YP_005171589.1	CDS	BCGMEX_2129c	NC_016804.1	2347344	2347610	R	PE family protein	complement(2347344..2347610)	Mycobacterium bovis BCG str. Mexico	11810414
YP_005171590.1	CDS	ansP1	NC_016804.1	2347991	2349460	D	Differs from Rv2127 by 2aa, D9G, S44G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative L-asparagine permease	2347991..2349460	Mycobacterium bovis BCG str. Mexico	11810415
YP_005171591.1	CDS	BCGMEX_2131	NC_016804.1	2349460	2349663	D	putative transmembrane protein	2349460..2349663	Mycobacterium bovis BCG str. Mexico	11810416
YP_005171592.1	CDS	BCGMEX_2132c	NC_016804.1	2349683	2350564	R	short-chain dehydrogenase	complement(2349683..2350564)	Mycobacterium bovis BCG str. Mexico	11810417
YP_005171593.1	CDS	cysS2	NC_016804.1	2350590	2351834	R	cysteinyl-tRNA synthetase	complement(2350590..2351834)	Mycobacterium bovis BCG str. Mexico	11810418
YP_005171594.1	CDS	cysQ	NC_016804.1	2351892	2352695	R	monophosphatase cysQ	complement(2351892..2352695)	Mycobacterium bovis BCG str. Mexico	11810419
YP_005171595.1	CDS	BCGMEX_2135	NC_016804.1	2352786	2353016	D	DNA-binding protein, CopG family	2352786..2353016	Mycobacterium bovis BCG str. Mexico	11810420
YP_005171596.1	CDS	BCGMEX_2136c	NC_016804.1	2353226	2354014	R	hypothetical protein	complement(2353226..2354014)	Mycobacterium bovis BCG str. Mexico	11810421
YP_005171597.1	CDS	BCGMEX_2137c	NC_016804.1	2354025	2354612	R	hypothetical protein	complement(2354025..2354612)	Mycobacterium bovis BCG str. Mexico	11810422
YP_005171598.1	CDS	BCGMEX_2138c	NC_016804.1	2354676	2355386	R	hypothetical protein	complement(2354676..2355386)	Mycobacterium bovis BCG str. Mexico	11810423
YP_005171599.1	CDS	BCGMEX_2139c	NC_016804.1	2355383	2356213	R	Differs from Mb2160c by 1aa L71V in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; undecaprenyl-diphosphatase	complement(2355383..2356213)	Mycobacterium bovis BCG str. Mexico	11810424
YP_005171600.1	CDS	BCGMEX_2140c	NC_016804.1	2356277	2356690	R	hypothetical protein	complement(2356277..2356690)	Mycobacterium bovis BCG str. Mexico	11810425
YP_005171601.1	CDS	lppL	NC_016804.1	2356705	2357781	D	Differs from Mb2162 by 3aa, VQV348-350SRF, due to 7bp substitution in latter,  in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative lipoprotein	2356705..2357781	Mycobacterium bovis BCG str. Mexico	11810426
YP_005171602.1	CDS	pyrD	NC_016804.1	2358095	2359168	D	Differs from Rv2139 and Mb2163 by 1aa, C35R in BCG Pasteur, BCG Tokyo and BCG Mexico; dihydroorotate dehydrogenase	2358095..2359168	Mycobacterium bovis BCG str. Mexico	11810427
YP_005171603.1	CDS	BCGMEX_2143c	NC_016804.1	2359173	2359703	R	hypothetical protein	complement(2359173..2359703)	Mycobacterium bovis BCG str. Mexico	11810428
YP_005171604.1	CDS	BCGMEX_2144c	NC_016804.1	2359751	2361097	R	hypothetical protein	complement(2359751..2361097)	Mycobacterium bovis BCG str. Mexico	11810429
YP_005171605.1	CDS	BCGMEX_2145c	NC_016804.1	2361568	2361885	R	hypothetical protein	complement(2361568..2361885)	Mycobacterium bovis BCG str. Mexico	11810431
YP_005171606.1	CDS	BCGMEX_2146c	NC_016804.1	2361882	2362097	R	hypothetical protein	complement(2361882..2362097)	Mycobacterium bovis BCG str. Mexico	11810432
YP_005171607.1	CDS	BCGMEX_2147	NC_016804.1	2362352	2363410	D	hypothetical protein	2362352..2363410	Mycobacterium bovis BCG str. Mexico	11810433
YP_005171608.1	CDS	BCGMEX_2148c	NC_016804.1	2363540	2363896	R	putative transmembrane protein	complement(2363540..2363896)	Mycobacterium bovis BCG str. Mexico	11810434
YP_005171609.1	CDS	wag31	NC_016804.1	2363991	2364773	R	hypothetical protein	complement(2363991..2364773)	Mycobacterium bovis BCG str. Mexico	11810435
YP_005171610.1	CDS	BCGMEX_2150c	NC_016804.1	2365041	2365331	R	putative transmembrane protein	complement(2365041..2365331)	Mycobacterium bovis BCG str. Mexico	11810436
YP_005171611.1	CDS	BCGMEX_2151c	NC_016804.1	2365493	2366218	R	hypothetical protein	complement(2365493..2366218)	Mycobacterium bovis BCG str. Mexico	11810437
YP_005171612.1	CDS	BCGMEX_2152c	NC_016804.1	2366215	2366991	R	hypothetical protein	complement(2366215..2366991)	Mycobacterium bovis BCG str. Mexico	11810438
YP_005171613.1	CDS	yfiH	NC_016804.1	2366997	2367749	R	hypothetical protein	complement(2366997..2367749)	Mycobacterium bovis BCG str. Mexico	11810439
YP_005171614.1	CDS	ftsZ	NC_016804.1	2367760	2368899	R	cell division protein ftsZ	complement(2367760..2368899)	Mycobacterium bovis BCG str. Mexico	11810440
YP_005171615.1	CDS	ftsQ	NC_016804.1	2369072	2370016	R	cell division protein ftsQ	complement(2369072..2370016)	Mycobacterium bovis BCG str. Mexico	11810441
YP_005171616.1	CDS	murC	NC_016804.1	2370013	2371497	R	UDP-N-acetylmuramate--L-alanine ligase	complement(2370013..2371497)	Mycobacterium bovis BCG str. Mexico	11810442
YP_005171617.1	CDS	murG	NC_016804.1	2371494	2372726	R	Differs from Rv2153c by 2aa, L36V, P74L in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	complement(2371494..2372726)	Mycobacterium bovis BCG str. Mexico	11810443
YP_005171618.1	CDS	ftsW	NC_016804.1	2372723	2374297	R	cell division protein FtsW	complement(2372723..2374297)	Mycobacterium bovis BCG str. Mexico	11810444
YP_005171619.1	CDS	murD	NC_016804.1	2374309	2375769	R	Differs from Rv2155c by 1aa, G247R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; UDP-N-acetylmuramoylalanine--D-glutamate ligase	complement(2374309..2375769)	Mycobacterium bovis BCG str. Mexico	11810445
YP_005171620.1	CDS	mraY	NC_016804.1	2375771	2376850	R	phospho-N-acetylmuramoyl-pentappeptide transferase	complement(2375771..2376850)	Mycobacterium bovis BCG str. Mexico	11810446
YP_005171621.1	CDS	murF	NC_016804.1	2376847	2378379	R	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase	complement(2376847..2378379)	Mycobacterium bovis BCG str. Mexico	11810447
YP_005171622.1	CDS	murE	NC_016804.1	2378376	2379983	R	UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase	complement(2378376..2379983)	Mycobacterium bovis BCG str. Mexico	11810448
YP_005171623.1	CDS	BCGMEX_2163c	NC_016804.1	2380006	2381040	R	hypothetical protein	complement(2380006..2381040)	Mycobacterium bovis BCG str. Mexico	11810449
YP_005171624.1	CDS	BCGMEX_2164c	NC_016804.1	2381037	2381657	R	In Mycobacterium tuberculosis strain H37Rv, Rv2160A and Rv2160c exist as 2 genes with an overlap region between them. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and bCG Mexico, a 4 bp insertion leads to a single product; hypothetical protein	complement(2381037..2381657)	Mycobacterium bovis BCG str. Mexico	11810450
YP_005171625.1	CDS	BCGMEX_2165c	NC_016804.1	2381650	2382516	R	hypothetical protein	complement(2381650..2382516)	Mycobacterium bovis BCG str. Mexico	11810451
YP_005171626.1	CDS	PE_PGRS38	NC_016804.1	2382619	2384091	R	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, in-frame deletions of 108 bp and 18 bp leads to a shorter product than in Mycobacterium tuberculosis strain H37Rv (490 aa versus 532 aa); PE-PGRS family protein	complement(2382619..2384091)	Mycobacterium bovis BCG str. Mexico	11810452
YP_005171627.1	CDS	pbpB	NC_016804.1	2384301	2386340	R	putative penicillin-binding membrane protein	complement(2384301..2386340)	Mycobacterium bovis BCG str. Mexico	11810453
YP_005171628.1	CDS	BCGMEX_2168c	NC_016804.1	2386337	2387491	R	Differs from Mb2188c by 1aa, V202A in Mycobacterium tuberculosis H37Rv, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2386337..2387491)	Mycobacterium bovis BCG str. Mexico	11810454
YP_005171629.1	CDS	mraW	NC_016804.1	2387488	2388678	R	S-adenosyl-methyltransferase	complement(2387488..2388678)	Mycobacterium bovis BCG str. Mexico	11810455
YP_005171630.1	CDS	mraZ	NC_016804.1	2388680	2389111	R	cell division protein MraZ	complement(2388680..2389111)	Mycobacterium bovis BCG str. Mexico	11810456
YP_005171631.1	CDS	BCGMEX_2171c	NC_016804.1	2389460	2389864	R	transmembrane protein	complement(2389460..2389864)	Mycobacterium bovis BCG str. Mexico	11810457
YP_005171632.1	CDS	BCGMEX_2172	NC_016804.1	2390130	2390750	D	hypothetical protein	2390130..2390750	Mycobacterium bovis BCG str. Mexico	11810458
YP_005171633.1	CDS	lppM	NC_016804.1	2390846	2391529	D	putative lipoprotein	2390846..2391529	Mycobacterium bovis BCG str. Mexico	11810459
YP_005171634.1	CDS	BCGMEX_2174c	NC_016804.1	2391526	2392431	R	hypothetical protein	complement(2391526..2392431)	Mycobacterium bovis BCG str. Mexico	11810460
YP_005171635.1	CDS	idsA2	NC_016804.1	2392742	2393800	D	putative geranylgeranyl pyrophosphate synthetase	2392742..2393800	Mycobacterium bovis BCG str. Mexico	11810461
YP_005171636.1	CDS	BCGMEX_2176	NC_016804.1	2393804	2395507	D	Differs from Rv2174 and Mb2196 at 3'-end owing to frameshift due to 1 bp insertion, and from Rv2174 by 1aa, S451A in BCG Pasteur, BCG Tokyo and BCG Mexico; integral membrane protein	2393804..2395507	Mycobacterium bovis BCG str. Mexico	11810462
YP_005171637.1	CDS	BCGMEX_2177c	NC_016804.1	2395342	2395782	R	Differs from Rv2175c by 1aa, L17P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative regulatory protein	complement(2395342..2395782)	Mycobacterium bovis BCG str. Mexico	11810463
YP_005171638.1	CDS	pknL	NC_016804.1	2395837	2397036	D	Differs from Rv2176 by 1aa, A52S in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; putative serine/threonine protein kinase L	2395837..2397036	Mycobacterium bovis BCG str. Mexico	11810464
YP_005171639.1	CDS	BCGMEX_2179c	NC_016804.1	2397178	2397843	R	Differs from Rv2177c by 1aa, K115T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transposase	complement(2397178..2397843)	Mycobacterium bovis BCG str. Mexico	11810465
YP_005171640.1	CDS	aroG	NC_016804.1	2398228	2399616	R	Differs from Rv2178c by 1aa, E265D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative 3-deoxy-D-arabino-heptulosonate-7- phosphate synthase II	complement(2398228..2399616)	Mycobacterium bovis BCG str. Mexico	11810466
YP_005171641.1	CDS	BCGMEX_2181c	NC_016804.1	2399707	2400213	R	hypothetical protein	complement(2399707..2400213)	Mycobacterium bovis BCG str. Mexico	11810467
YP_005171642.1	CDS	BCGMEX_2182c	NC_016804.1	2400223	2401110	R	Differs from Rv2180c by 1aa, T156P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative integral membrane protein	complement(2400223..2401110)	Mycobacterium bovis BCG str. Mexico	11810468
YP_005171643.1	CDS	BCGMEX_2183	NC_016804.1	2401198	2402481	D	putative integral membrane protein	2401198..2402481	Mycobacterium bovis BCG str. Mexico	11810469
YP_005171644.1	CDS	BCGMEX_2184c	NC_016804.1	2402482	2403225	R	1-acylglycerol-3-phosphate O-acyltransferase	complement(2402482..2403225)	Mycobacterium bovis BCG str. Mexico	11810470
YP_005171645.1	CDS	BCGMEX_2185c	NC_016804.1	2403311	2403706	R	hypothetical protein	complement(2403311..2403706)	Mycobacterium bovis BCG str. Mexico	11810471
YP_005171646.1	CDS	BCGMEX_2186c	NC_016804.1	2403703	2404842	R	hypothetical protein	complement(2403703..2404842)	Mycobacterium bovis BCG str. Mexico	11810472
YP_005171647.1	CDS	BCGMEX_2187c	NC_016804.1	2404962	2405396	R	hypothetical protein	complement(2404962..2405396)	Mycobacterium bovis BCG str. Mexico	11810473
YP_005171648.1	CDS	BCGMEX_2188c	NC_016804.1	2405501	2405890	R	hypothetical protein	complement(2405501..2405890)	Mycobacterium bovis BCG str. Mexico	11810474
YP_005171649.1	CDS	BCGMEX_2189	NC_016804.1	2406056	2406568	D	In Mycobacterium tuberculosis strain H37Rv, fadD15 exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to single base deletion splits fadD15 into 2 parts.; hypothetical protein	2406056..2406568	Mycobacterium bovis BCG str. Mexico	11810475
YP_005171650.1	CDS	fadD15	NC_016804.1	2406331	2407857	D	In Mycobacterium tuberculosis strain H37Rv, fadD15 exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to single base deletion splits fadD15 into 2 parts. Differs from Rv2187 by 2aa, I8T, E287G in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; putative long-chain-fatty-acid--CoA ligase	2406331..2407857	Mycobacterium bovis BCG str. Mexico	11810476
YP_005171651.1	CDS	BCGMEX_2191c	NC_016804.1	2407888	2409045	R	glycosyltransferase	complement(2407888..2409045)	Mycobacterium bovis BCG str. Mexico	11810477
YP_005171652.1	CDS	BCGMEX_2192c	NC_016804.1	2409142	2409915	R	hypothetical protein	complement(2409142..2409915)	Mycobacterium bovis BCG str. Mexico	11810478
YP_005171653.1	CDS	BCGMEX_2193c	NC_016804.1	2410010	2411167	R	hypothetical protein	complement(2410010..2411167)	Mycobacterium bovis BCG str. Mexico	11810479
YP_005171654.1	CDS	BCGMEX_2194	NC_016804.1	2411714	2413651	D	Differs from Rv2191 by 1aa, T272A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2411714..2413651	Mycobacterium bovis BCG str. Mexico	11810480
YP_005171655.1	CDS	trpD	NC_016804.1	2413526	2414638	R	anthranilate phosphoribosyltransferase	complement(2413526..2414638)	Mycobacterium bovis BCG str. Mexico	11810481
YP_005171656.1	CDS	ctaE	NC_016804.1	2414796	2415407	D	putative cytochrome c oxidase subunit III	2414796..2415407	Mycobacterium bovis BCG str. Mexico	11810482
YP_005171657.1	CDS	qcrC	NC_016804.1	2415448	2416290	D	putative ubiquinol cytochrome C reductase, cytochrome C1 subunit	2415448..2416290	Mycobacterium bovis BCG str. Mexico	11810483
YP_005171658.1	CDS	qcrA	NC_016804.1	2416287	2417576	D	Differs from Rv2195 by 1aa, I281M in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Ubiquinol-cytochrome C reductase iron-sulfur subunit	2416287..2417576	Mycobacterium bovis BCG str. Mexico	11810484
YP_005171659.1	CDS	qcrB	NC_016804.1	2417573	2419222	D	Ubiquinol--cytochrome c reductase, cytochrome B subunit	2417573..2419222	Mycobacterium bovis BCG str. Mexico	11810485
YP_005171660.1	CDS	BCGMEX_2200c	NC_016804.1	2419513	2420157	R	Differs from Rv2197c by 1aa, S202A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	complement(2419513..2420157)	Mycobacterium bovis BCG str. Mexico	11810486
YP_005171661.1	CDS	mmpS3	NC_016804.1	2420157	2421056	R	hypothetical protein	complement(2420157..2421056)	Mycobacterium bovis BCG str. Mexico	11810487
YP_005171662.1	CDS	ctaF	NC_016804.1	2421242	2421661	R	putative cytochrome c oxidase polypeptide 4	complement(2421242..2421661)	Mycobacterium bovis BCG str. Mexico	11810488
YP_005171663.1	CDS	ctaC	NC_016804.1	2421669	2422760	R	putative cytochrome c oxidase subunit II	complement(2421669..2422760)	Mycobacterium bovis BCG str. Mexico	11810489
YP_005171664.1	CDS	asnB	NC_016804.1	2423006	2424964	D	putative asparagine synthetase	2423006..2424964	Mycobacterium bovis BCG str. Mexico	11810490
YP_005171665.1	CDS	adoK	NC_016804.1	2425062	2426036	R	adenosine kinase	complement(2425062..2426036)	Mycobacterium bovis BCG str. Mexico	11810491
YP_005171666.1	CDS	BCGMEX_2206	NC_016804.1	2426240	2426932	D	hypothetical protein	2426240..2426932	Mycobacterium bovis BCG str. Mexico	11810492
YP_005171667.1	CDS	BCGMEX_2207c	NC_016804.1	2426940	2427296	R	hypothetical protein	complement(2426940..2427296)	Mycobacterium bovis BCG str. Mexico	11810493
YP_005171668.1	CDS	BCGMEX_2208c	NC_016804.1	2427396	2428472	R	hypothetical protein	complement(2427396..2428472)	Mycobacterium bovis BCG str. Mexico	11810494
YP_005171669.1	CDS	BCGMEX_2209	NC_016804.1	2428631	2429341	D	putative transmembrane protein	2428631..2429341	Mycobacterium bovis BCG str. Mexico	11810495
YP_005171670.1	CDS	cobT	NC_016804.1	2429420	2430505	D	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	2429420..2430505	Mycobacterium bovis BCG str. Mexico	11810496
YP_005171671.1	CDS	cobS	NC_016804.1	2430502	2431251	D	Differs from Rv2208 by 1aa, S155L in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; cobalamin synthase	2430502..2431251	Mycobacterium bovis BCG str. Mexico	11810497
YP_005171672.1	CDS	BCGMEX_2212	NC_016804.1	2431409	2432947	D	putative integral membrane protein	2431409..2432947	Mycobacterium bovis BCG str. Mexico	11810498
YP_005171673.1	CDS	ilvE	NC_016804.1	2432873	2433979	R	Differs from Rv2210c by 1aa, A28E in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; branched-chain amino acid aminotransferase	complement(2432873..2433979)	Mycobacterium bovis BCG str. Mexico	11810499
YP_005171674.1	CDS	gcvT	NC_016804.1	2434051	2435190	R	aminomethyltransferase (glycine cleavage system T protein)	complement(2434051..2435190)	Mycobacterium bovis BCG str. Mexico	11810500
YP_005171675.1	CDS	BCGMEX_2215	NC_016804.1	2435199	2436335	D	hypothetical protein	2435199..2436335	Mycobacterium bovis BCG str. Mexico	11810501
YP_005171676.1	CDS	pepB	NC_016804.1	2436347	2437894	D	Differs from Rv2213 by 1aa, L210F in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative cytosol aminopeptidase	2436347..2437894	Mycobacterium bovis BCG str. Mexico	11810502
YP_005171677.1	CDS	ephD	NC_016804.1	2437932	2439710	R	short-chain dehydrogenase	complement(2437932..2439710)	Mycobacterium bovis BCG str. Mexico	11810503
YP_005171678.1	CDS	dlaT	NC_016804.1	2439974	2441635	D	Differs from Rv2215 and Mb2238 by 1aa, V517L in BCG Pasteur, BCG Tokyo and BCG Mexico; dihydrolipoamide acyltransferase	2439974..2441635	Mycobacterium bovis BCG str. Mexico	11810504
YP_005171679.1	CDS	BCGMEX_2219	NC_016804.1	2441635	2442540	D	hypothetical protein	2441635..2442540	Mycobacterium bovis BCG str. Mexico	11810505
YP_005171680.1	CDS	lipB	NC_016804.1	2442593	2443285	D	Differs from Rv2217 by 1aa, G73D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Octanoyltransferase	2442593..2443285	Mycobacterium bovis BCG str. Mexico	11810506
YP_005171681.1	CDS	lipA	NC_016804.1	2443282	2444217	D	lipoyl synthase	2443282..2444217	Mycobacterium bovis BCG str. Mexico	11810507
YP_005171682.1	CDS	BCGMEX_2222	NC_016804.1	2444244	2444996	D	Differs from Rv2219 by 1aa, L74F in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	2444244..2444996	Mycobacterium bovis BCG str. Mexico	11810508
YP_005171683.1	CDS	BCGMEX_2223c	NC_016804.1	2445003	2445425	R	hypothetical protein	complement(2445003..2445425)	Mycobacterium bovis BCG str. Mexico	11810509
YP_005171684.1	CDS	glnA1	NC_016804.1	2445624	2447060	D	glutamine synthetase	2445624..2447060	Mycobacterium bovis BCG str. Mexico	11810510
YP_005171685.1	CDS	glnE	NC_016804.1	2447378	2450362	R	glutamate-ammonia-ligase adenylyltransferase	complement(2447378..2450362)	Mycobacterium bovis BCG str. Mexico	11810511
YP_005171686.1	CDS	glnA2	NC_016804.1	2450411	2451751	R	putative glutamine synthetase	complement(2450411..2451751)	Mycobacterium bovis BCG str. Mexico	11810512
YP_005171687.1	CDS	BCGMEX_2227c	NC_016804.1	2451846	2453408	R	Differs from Rv2223c and Mb2247c by 1aa, S307A in BCG Pasteur and BCG Tokyo; putative exported protease	complement(2451846..2453408)	Mycobacterium bovis BCG str. Mexico	11810513
YP_005171688.1	CDS	BCGMEX_2228c	NC_016804.1	2453470	2455032	R	putative exported protease	complement(2453470..2455032)	Mycobacterium bovis BCG str. Mexico	11810514
YP_005171689.1	CDS	BCGMEX_2229c	NC_016804.1	2455234	2455425	R	hypothetical protein	complement(2455234..2455425)	Mycobacterium bovis BCG str. Mexico	11810515
YP_005171690.1	CDS	panB	NC_016804.1	2455751	2456596	D	3-methyl-2-oxobutanoate hydroxymethyltransferase	2455751..2456596	Mycobacterium bovis BCG str. Mexico	11810516
YP_005171691.1	CDS	BCGMEX_2231	NC_016804.1	2456841	2458382	D	Differs from Rv2226 and Mb2250 by 1aa, N299D andG31D, respectively, in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2456841..2458382	Mycobacterium bovis BCG str. Mexico	11810517
YP_005171692.1	CDS	BCGMEX_2232	NC_016804.1	2458940	2459260	D	In Mycobacterium tuberculosis strain H37Rv, Rv2227 exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a 1bp to 2bp substitution splits Rv2227 in two parts; hypothetical protein	2458940..2459260	Mycobacterium bovis BCG str. Mexico	11810519
YP_005171693.1	CDS	BCGMEX_2233	NC_016804.1	2459268	2459642	D	In Mycobacterium tuberculosis strain H37Rv, Rv2227 exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a 1bp to 2bp substitution splits Rv2227 in two parts; hypothetical protein	2459268..2459642	Mycobacterium bovis BCG str. Mexico	11810520
YP_005171694.1	CDS	BCGMEX_2234c	NC_016804.1	2459654	2460748	R	hypothetical protein	complement(2459654..2460748)	Mycobacterium bovis BCG str. Mexico	11810521
YP_005171695.1	CDS	BCGMEX_2235c	NC_016804.1	2460745	2461482	R	Differs from Rv2229c by 1aa, Q239R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2460745..2461482)	Mycobacterium bovis BCG str. Mexico	11810522
YP_005171696.1	CDS	BCGMEX_2236c	NC_016804.1	2461479	2462618	R	hypothetical protein	complement(2461479..2462618)	Mycobacterium bovis BCG str. Mexico	11810523
YP_005171697.1	CDS	cobC	NC_016804.1	2462615	2463709	R	putative aminotransferase	complement(2462615..2463709)	Mycobacterium bovis BCG str. Mexico	11810524
YP_005171698.1	CDS	BCGMEX_2238	NC_016804.1	2464288	2465163	D	hypothetical protein	2464288..2465163	Mycobacterium bovis BCG str. Mexico	11810525
YP_005171699.1	CDS	ptpA	NC_016804.1	2465156	2465647	D	phosphotyrosine protein phosphatase	2465156..2465647	Mycobacterium bovis BCG str. Mexico	11810526
YP_005171700.1	CDS	BCGMEX_2240	NC_016804.1	2465647	2466462	D	putative transmembrane protein	2465647..2466462	Mycobacterium bovis BCG str. Mexico	11810527
YP_005171701.1	CDS	cobD	NC_016804.1	2466444	2467385	R	Differs from Rv2236c by 2aa, I5T, C79S in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; Cobalamin biosynthesis protein	complement(2466444..2467385)	Mycobacterium bovis BCG str. Mexico	11810528
YP_005171702.1	CDS	BCGMEX_2242	NC_016804.1	2467499	2468266	D	hypothetical protein	2467499..2468266	Mycobacterium bovis BCG str. Mexico	11810529
YP_005171703.1	CDS	ahpE	NC_016804.1	2468725	2469186	R	peroxiredoxin	complement(2468725..2469186)	Mycobacterium bovis BCG str. Mexico	11810531
YP_005171704.1	CDS	BCGMEX_2244c	NC_016804.1	2469186	2469662	R	hypothetical protein	complement(2469186..2469662)	Mycobacterium bovis BCG str. Mexico	11810532
YP_005171705.1	CDS	BCGMEX_2245c	NC_016804.1	2469700	2470497	R	Differs from Rv2240c by 1aa, K259T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2469700..2470497)	Mycobacterium bovis BCG str. Mexico	11810533
YP_005171706.1	CDS	aceE	NC_016804.1	2470549	2473254	D	Differs from Mb2265 by 1aa, G309R in Mycobacterium tuberculosis, BCG Pasteur, BCG Tokio and BCG Mexico; Pyruvate dehydrogenase subunit E1	2470549..2473254	Mycobacterium bovis BCG str. Mexico	11810534
YP_005171707.1	CDS	BCGMEX_2247	NC_016804.1	2473314	2474558	D	Differs from Rv2242 and Mb2266 by 1aa, T363A in BCG Pasteur, BCG Tokyo and Mexico; hypothetical protein	2473314..2474558	Mycobacterium bovis BCG str. Mexico	11810535
YP_005171708.1	CDS	fabD	NC_016804.1	2474797	2475705	D	Malonyl CoA-acyl carrier protein transacylase	2474797..2475705	Mycobacterium bovis BCG str. Mexico	11810536
YP_005171709.1	CDS	acpP	NC_016804.1	2475781	2476128	D	acyl carrier protein	2475781..2476128	Mycobacterium bovis BCG str. Mexico	11810537
YP_005171710.1	CDS	kasA	NC_016804.1	2476125	2477375	D	3-oxoacyl-ACP synthase	2476125..2477375	Mycobacterium bovis BCG str. Mexico	11810538
YP_005171711.1	CDS	kasB	NC_016804.1	2477406	2478722	D	3-oxoacyl-ACP synthase	2477406..2478722	Mycobacterium bovis BCG str. Mexico	11810539
YP_005171712.1	CDS	accD6	NC_016804.1	2478753	2480174	D	acetyl/propionyl-CoA carboxylase subunit beta	2478753..2480174	Mycobacterium bovis BCG str. Mexico	11810540
YP_005171713.1	CDS	BCGMEX_2253	NC_016804.1	2480282	2480686	D	In Mycobacterium bovis and Mycobacterium tuberculosis, Rv2248 and Mb2272 exist as single gene. In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, the ortholog is split into two parts owing to single base insertion in G-string; hypothetical protein	2480282..2480686	Mycobacterium bovis BCG str. Mexico	11810541
YP_005171714.1	CDS	BCGMEX_2254	NC_016804.1	2480394	2481098	D	In Mycobacterium bovis and Mycobacterium tuberculosis, Rv2248 and Mb2272 exist as single gene. In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, the ortholog is split into two parts owing to single base insertion in G-string; hypothetical protein	2480394..2481098	Mycobacterium bovis BCG str. Mexico	11810542
YP_005171715.1	CDS	glpD1	NC_016804.1	2481167	2482717	R	glycerol-3-phosphate dehydrogenase	complement(2481167..2482717)	Mycobacterium bovis BCG str. Mexico	11810543
YP_005171716.1	CDS	BCGMEX_2256c	NC_016804.1	2482711	2483280	R	Differs from Mb2274c by 1aa, D68A in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transcriptional regulatory protein	complement(2482711..2483280)	Mycobacterium bovis BCG str. Mexico	11810544
YP_005171717.1	CDS	BCGMEX_2257	NC_016804.1	2483328	2484917	D	In Mycobacterium tuberculosis H37Rv, Rv2250A and Rv2251 exist as 2 genes with an overlap region between them. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a single base deletion leads to a single product; putative alkyl-dihydroxyacetonephosphate synthase	2483328..2484917	Mycobacterium bovis BCG str. Mexico	11810545
YP_005171718.1	CDS	BCGMEX_2258	NC_016804.1	2484914	2485843	D	diacylglycerol kinase	2484914..2485843	Mycobacterium bovis BCG str. Mexico	11810546
YP_005171719.1	CDS	BCGMEX_2259	NC_016804.1	2485909	2486412	D	Possible secreted unknown protein; hypothetical protein	2485909..2486412	Mycobacterium bovis BCG str. Mexico	11810547
YP_005171720.1	CDS	BCGMEX_2260c	NC_016804.1	2486445	2486900	R	Differs from Rv2254c by 1aa, V68A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative integral membrane protein	complement(2486445..2486900)	Mycobacterium bovis BCG str. Mexico	11810548
YP_005171721.1	CDS	BCGMEX_2261c	NC_016804.1	2486905	2487099	R	hypothetical protein	complement(2486905..2487099)	Mycobacterium bovis BCG str. Mexico	11810549
YP_005171722.1	CDS	BCGMEX_2262c	NC_016804.1	2487266	2487799	R	Differs from Rv2256c by 1aa, G26A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2487266..2487799)	Mycobacterium bovis BCG str. Mexico	11810550
YP_005171723.1	CDS	BCGMEX_2263c	NC_016804.1	2487929	2488747	R	hypothetical protein	complement(2487929..2488747)	Mycobacterium bovis BCG str. Mexico	11810551
YP_005171724.1	CDS	BCGMEX_2264c	NC_016804.1	2488761	2489822	R	putative transcriptional regulatory protein	complement(2488761..2489822)	Mycobacterium bovis BCG str. Mexico	11810552
YP_005171725.1	CDS	adhE2	NC_016804.1	2490064	2491149	D	putative zinc-dependent alcohol dehydrogenase	2490064..2491149	Mycobacterium bovis BCG str. Mexico	11810553
YP_005171726.1	CDS	BCGMEX_2266	NC_016804.1	2491149	2491784	D	hypothetical protein	2491149..2491784	Mycobacterium bovis BCG str. Mexico	11810554
YP_005171727.1	CDS	BCGMEX_2267c	NC_016804.1	2491861	2493369	R	In Mycobacterium tuberculosis strain H37Rv, Rv2262cand Rv2261c exist as 2 genes. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 2 bp deletion results in a single product; hypothetical protein	complement(2491861..2493369)	Mycobacterium bovis BCG str. Mexico	11810555
YP_005171728.1	CDS	BCGMEX_2268	NC_016804.1	2493458	2494411	D	short-chain dehydrogenase	2493458..2494411	Mycobacterium bovis BCG str. Mexico	11810556
YP_005171729.1	CDS	BCGMEX_2269c	NC_016804.1	2494389	2496167	R	hypothetical protein	complement(2494389..2496167)	Mycobacterium bovis BCG str. Mexico	11810557
YP_005171730.1	CDS	BCGMEX_2270	NC_016804.1	2496517	2497746	D	putative transmembrane protein	2496517..2497746	Mycobacterium bovis BCG str. Mexico	11810558
YP_005171731.1	CDS	cyp124	NC_016804.1	2497921	2499207	D	putative cytochrome P450 hydroxylase	2497921..2499207	Mycobacterium bovis BCG str. Mexico	11810559
YP_005171732.1	CDS	BCGMEX_2272c	NC_016804.1	2499461	2500627	R	hypothetical protein	complement(2499461..2500627)	Mycobacterium bovis BCG str. Mexico	11810560
YP_005171733.1	CDS	cyp128	NC_016804.1	2500624	2502093	R	Differs from Rv2268c and Mb2291c by 1aa, F203L in BCG Pasteur, BCG Tokyo and BCG Mexico; putative cytochrome P450 128	complement(2500624..2502093)	Mycobacterium bovis BCG str. Mexico	11810561
YP_005171734.1	CDS	BCGMEX_2274c	NC_016804.1	2502106	2502438	R	hypothetical protein	complement(2502106..2502438)	Mycobacterium bovis BCG str. Mexico	11810562
YP_005171735.1	CDS	lppN	NC_016804.1	2502515	2503042	D	Differs from Mb2293 by 1aa, P152L in Mycobacterium tuberculosis H37Rv, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative lipoprotein	2502515..2503042	Mycobacterium bovis BCG str. Mexico	11810563
YP_005171736.1	CDS	BCGMEX_2276	NC_016804.1	2503149	2503448	D	hypothetical protein	2503149..2503448	Mycobacterium bovis BCG str. Mexico	11810564
YP_005171737.1	CDS	BCGMEX_2277	NC_016804.1	2503554	2503922	D	hypothetical protein	2503554..2503922	Mycobacterium bovis BCG str. Mexico	11810565
YP_005171738.1	CDS	BCGMEX_2278	NC_016804.1	2503919	2504248	D	putative transmembrane protein	2503919..2504248	Mycobacterium bovis BCG str. Mexico	11810566
YP_005171739.1	CDS	BCGMEX_2279c	NC_016804.1	2504305	2504622	R	Differs from Rv2274c by 1aa, M33I in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2504305..2504622)	Mycobacterium bovis BCG str. Mexico	11810567
YP_005171740.1	CDS	BCGMEX_2280	NC_016804.1	2504700	2505569	D	Differs from Rv2275 and Mb2298 by 1aa, A261E in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2504700..2505569	Mycobacterium bovis BCG str. Mexico	11810568
YP_005171741.1	CDS	cyp121	NC_016804.1	2505566	2506756	D	cytochrome P450 hydroxylase	2505566..2506756	Mycobacterium bovis BCG str. Mexico	11810569
YP_005171742.1	CDS	BCGMEX_2282c	NC_016804.1	2506941	2507840	R	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 1358 bp deletion containing an IS6110 sequence, disrupts the 5' start of Rv2277c resulting in a slightly shorter product compared to the homolog in Mycobacterium tuberculosis strain H37Rv (299 aa versus 301 aa). Differs from Mb2300c by 1aa in BCG Pasteur, BCG Tokyo and BCG Mexico; putative glycerolphosphodiesterase	complement(2506941..2507840)	Mycobacterium bovis BCG str. Mexico	11810570
YP_005171743.1	CDS	BCGMEX_2283	NC_016804.1	2508019	2509398	D	putative dehydrogenase	2508019..2509398	Mycobacterium bovis BCG str. Mexico	11810571
YP_005171744.1	CDS	pitB	NC_016804.1	2509632	2511290	D	putative phosphate-transport permease	2509632..2511290	Mycobacterium bovis BCG str. Mexico	11810572
YP_005171745.1	CDS	BCGMEX_2285c	NC_016804.1	2511397	2512335	R	transcriptional regulator, lysR-family	complement(2511397..2512335)	Mycobacterium bovis BCG str. Mexico	11810573
YP_005171746.1	CDS	BCGMEX_2286	NC_016804.1	2512400	2512594	D	hypothetical protein	2512400..2512594	Mycobacterium bovis BCG str. Mexico	11810574
YP_005171747.1	CDS	lipM	NC_016804.1	2512604	2513899	D	putative esterase	2512604..2513899	Mycobacterium bovis BCG str. Mexico	11810575
YP_005171748.1	CDS	BCGMEX_2288	NC_016804.1	2513932	2515269	D	putative diacylglycerol O-acyltransferase	2513932..2515269	Mycobacterium bovis BCG str. Mexico	11810576
YP_005171749.1	CDS	BCGMEX_2289c	NC_016804.1	2515336	2515599	R	In Mycobacterium tuberculosis strain H37Rv, Rv2286c exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, an in-frame stop codon due to a single base transition splits Rv2286c into 2 parts; hypothetical protein	complement(2515336..2515599)	Mycobacterium bovis BCG str. Mexico	11810577
YP_005171750.1	CDS	BCGMEX_2290c	NC_016804.1	2515627	2516028	R	In Mycobacterium tuberculosis strain H37Rv, Rv2286c exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, an in-frame stop codon due to a single base transition splits Rv2286c into 2 parts; hypothetical protein	complement(2515627..2516028)	Mycobacterium bovis BCG str. Mexico	11810578
YP_005171751.1	CDS	yjcE	NC_016804.1	2516162	2517790	D	putative integral membrane transport protein	2516162..2517790	Mycobacterium bovis BCG str. Mexico	11810579
YP_005171752.1	CDS	BCGMEX_2292	NC_016804.1	2517787	2518164	D	hypothetical protein	2517787..2518164	Mycobacterium bovis BCG str. Mexico	11810580
YP_005171753.1	CDS	cdh	NC_016804.1	2518134	2518916	D	CDP-diacylglycerol pyrophosphatase	2518134..2518916	Mycobacterium bovis BCG str. Mexico	11810581
YP_005171754.1	CDS	lppOa	NC_016804.1	2519058	2519213	D	In Mycobacterium tuberculosis strain H37Rv, Rv2290 exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a single base deletion, splits lppO into 2 parts, lppOa and lppOb; putative lipoprotein	2519058..2519213	Mycobacterium bovis BCG str. Mexico	11810582
YP_005171755.1	CDS	lppOb	NC_016804.1	2519207	2519572	D	In Mycobacterium tuberculosis strain H37Rv, Rv2290 exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a single base deletion, splits lppO into 2 parts, lppOa and lppOb; putative lipoprotein	2519207..2519572	Mycobacterium bovis BCG str. Mexico	11810583
YP_005171756.1	CDS	sseB	NC_016804.1	2519632	2520486	D	In Mycobacterium bovis, truncation at the 5' start due to a 2 bp deletion, leads to a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico (256 aa versus 284 aa). Differs from Rv2291 by 1aa, A262E; putative thiosulfate sulfurtransferase	2519632..2520486	Mycobacterium bovis BCG str. Mexico	11810584
YP_005171757.1	CDS	BCGMEX_2297c	NC_016804.1	2520487	2521491	R	In Mycobacterium tuberculosis strain H37Rv, Rv2293c and Rv2292c exist as 2 genes. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a single base insertion results in a single product; hypothetical protein	complement(2520487..2521491)	Mycobacterium bovis BCG str. Mexico	11810585
YP_005171758.1	CDS	BCGMEX_2298	NC_016804.1	2521786	2523009	D	putative aminotransferase	2521786..2523009	Mycobacterium bovis BCG str. Mexico	11810586
YP_005171759.1	CDS	BCGMEX_2299	NC_016804.1	2523232	2523870	D	hypothetical protein	2523232..2523870	Mycobacterium bovis BCG str. Mexico	11810587
YP_005171760.1	CDS	BCGMEX_2300	NC_016804.1	2523964	2524866	D	haloalkane dehalogenase	2523964..2524866	Mycobacterium bovis BCG str. Mexico	11810588
YP_005171761.1	CDS	BCGMEX_2301	NC_016804.1	2524898	2525350	D	hypothetical protein	2524898..2525350	Mycobacterium bovis BCG str. Mexico	11810589
YP_005171762.1	CDS	BCGMEX_2302	NC_016804.1	2525542	2526513	D	hypothetical protein	2525542..2526513	Mycobacterium bovis BCG str. Mexico	11810590
YP_005171763.1	CDS	htpG	NC_016804.1	2526519	2528462	R	chaperone protein	complement(2526519..2528462)	Mycobacterium bovis BCG str. Mexico	11810591
YP_005171764.1	CDS	BCGMEX_2304c	NC_016804.1	2528536	2529468	R	hypothetical protein	complement(2528536..2529468)	Mycobacterium bovis BCG str. Mexico	11810592
YP_005171765.1	CDS	cut2	NC_016804.1	2529475	2530167	D	putative cutinase	2529475..2530167	Mycobacterium bovis BCG str. Mexico	11810593
YP_005171766.1	CDS	BCGMEX_2306	NC_016804.1	2530273	2530515	D	hypothetical protein	2530273..2530515	Mycobacterium bovis BCG str. Mexico	11810594
YP_005171767.1	CDS	BCGMEX_2307c	NC_016804.1	2530556	2531479	R	putative antibiotic-resistance protein	complement(2530556..2531479)	Mycobacterium bovis BCG str. Mexico	11810595
YP_005171768.1	CDS	BCGMEX_2308c	NC_016804.1	2531476	2531685	R	hypothetical protein	complement(2531476..2531685)	Mycobacterium bovis BCG str. Mexico	11810596
YP_005171769.1	CDS	BCGMEX_2309	NC_016804.1	2532269	2533558	D	Differs from Rv2305 by 1aa, D148G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2532269..2533558	Mycobacterium bovis BCG str. Mexico	11810597
YP_005171770.1	CDS	BCGMEX_2310	NC_016804.1	2533568	2534161	D	Differs from Rv2306A by 1aa, V47I in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2533568..2534161	Mycobacterium bovis BCG str. Mexico	11810598
YP_005171771.1	CDS	BCGMEX_2311	NC_016804.1	2533948	2534382	D	hypothetical protein	2533948..2534382	Mycobacterium bovis BCG str. Mexico	11810599
YP_005171772.1	CDS	BCGMEX_2312c	NC_016804.1	2534311	2535156	R	Differs from Rv2307c by 2aa, T24M, W235R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2534311..2535156)	Mycobacterium bovis BCG str. Mexico	11810600
YP_005171773.1	CDS	BCGMEX_2313c	NC_016804.1	2535688	2535879	R	putative glycine rich protein	complement(2535688..2535879)	Mycobacterium bovis BCG str. Mexico	11810601
YP_005171774.1	CDS	BCGMEX_2314c	NC_016804.1	2535964	2536395	R	putative glycine rich protein	complement(2535964..2536395)	Mycobacterium bovis BCG str. Mexico	11810602
YP_005171775.1	CDS	BCGMEX_2315c	NC_016804.1	2536488	2536670	R	hypothetical protein	complement(2536488..2536670)	Mycobacterium bovis BCG str. Mexico	11810603
YP_005171776.1	CDS	BCGMEX_2316	NC_016804.1	2536879	2537595	D	Differs from Rv2308 by 1aa, V43G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2536879..2537595	Mycobacterium bovis BCG str. Mexico	11810604
YP_005171777.1	CDS	BCGMEX_2317	NC_016804.1	2537605	2537937	D	hypothetical protein	2537605..2537937	Mycobacterium bovis BCG str. Mexico	11810605
YP_005171778.1	CDS	BCGMEX_2318c	NC_016804.1	2538303	2538758	R	putative integrase	complement(2538303..2538758)	Mycobacterium bovis BCG str. Mexico	11810607
YP_005171779.1	CDS	BCGMEX_2319	NC_016804.1	2539505	2539792	D	Differs from Rv2309A by 1aa, K53E in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2539505..2539792	Mycobacterium bovis BCG str. Mexico	11810608
YP_005171780.1	CDS	BCGMEX_2320	NC_016804.1	2539895	2540239	D	putative excisionase	2539895..2540239	Mycobacterium bovis BCG str. Mexico	11810609
YP_005171781.1	CDS	BCGMEX_2321	NC_016804.1	2540272	2540868	D	hypothetical protein	2540272..2540868	Mycobacterium bovis BCG str. Mexico	11810610
YP_005171782.1	CDS	BCGMEX_2322	NC_016804.1	2540946	2541215	D	hypothetical protein	2540946..2541215	Mycobacterium bovis BCG str. Mexico	11810611
YP_005171783.1	CDS	BCGMEX_2323c	NC_016804.1	2541512	2542366	R	hypothetical protein	complement(2541512..2542366)	Mycobacterium bovis BCG str. Mexico	11810612
YP_005171784.1	CDS	BCGMEX_2324c	NC_016804.1	2542377	2543750	R	hypothetical protein	complement(2542377..2543750)	Mycobacterium bovis BCG str. Mexico	11810613
YP_005171785.1	CDS	BCGMEX_2325c	NC_016804.1	2543747	2545264	R	hypothetical protein	complement(2543747..2545264)	Mycobacterium bovis BCG str. Mexico	11810614
YP_005171786.1	CDS	uspA	NC_016804.1	2545298	2546170	D	Differs from Rv2316 by 1aa, L126V in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative sugar-transport integral membrane protein ABC transporter	2545298..2546170	Mycobacterium bovis BCG str. Mexico	11810615
YP_005171787.1	CDS	uspB	NC_016804.1	2546157	2546981	D	putative sugar-transport integral membrane protein ABC transporter	2546157..2546981	Mycobacterium bovis BCG str. Mexico	11810616
YP_005171788.1	CDS	uspC	NC_016804.1	2546978	2548300	D	Differs from Rv2318 by 1aa, V354L in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative periplasmic sugar-binding lipoprotein	2546978..2548300	Mycobacterium bovis BCG str. Mexico	11810617
YP_005171789.1	CDS	BCGMEX_2329c	NC_016804.1	2548308	2549186	R	Differs from Rv2319c and Mb2346c by 1aa, G105E in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2548308..2549186)	Mycobacterium bovis BCG str. Mexico	11810618
YP_005171790.1	CDS	rocE	NC_016804.1	2549183	2550613	R	putative cationic amino acid transport integral membrane protein	complement(2549183..2550613)	Mycobacterium bovis BCG str. Mexico	11810619
YP_005171791.1	CDS	rocD2	NC_016804.1	2550614	2551159	R	putative ornithine aminotransferase	complement(2550614..2551159)	Mycobacterium bovis BCG str. Mexico	11810620
YP_005171792.1	CDS	rocD1	NC_016804.1	2551159	2551824	R	putative ornithine aminotransferase	complement(2551159..2551824)	Mycobacterium bovis BCG str. Mexico	11810621
YP_005171793.1	CDS	BCGMEX_2333c	NC_016804.1	2551821	2552729	R	Differs from Rv2323c by 1aa, T113A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2551821..2552729)	Mycobacterium bovis BCG str. Mexico	11810622
YP_005171794.1	CDS	BCGMEX_2334	NC_016804.1	2552794	2553240	D	AsnC family transcriptional regulator	2552794..2553240	Mycobacterium bovis BCG str. Mexico	11810623
YP_005171795.1	CDS	BCGMEX_2335c	NC_016804.1	2553469	2554317	R	hypothetical protein	complement(2553469..2554317)	Mycobacterium bovis BCG str. Mexico	11810624
YP_005171796.1	CDS	BCGMEX_2336c	NC_016804.1	2554314	2556407	R	putative transmembrane ATP-binding protein ABC transporter	complement(2554314..2556407)	Mycobacterium bovis BCG str. Mexico	11810625
YP_005171797.1	CDS	BCGMEX_2337	NC_016804.1	2556448	2556939	D	hypothetical protein	2556448..2556939	Mycobacterium bovis BCG str. Mexico	11810626
YP_005171798.1	CDS	PE23	NC_016804.1	2557191	2558339	D	PE family protein	2557191..2558339	Mycobacterium bovis BCG str. Mexico	11810627
YP_005171799.1	CDS	narK1	NC_016804.1	2558374	2559921	R	putative nitrite extrusion protein 1	complement(2558374..2559921)	Mycobacterium bovis BCG str. Mexico	11810628
YP_005171800.1	CDS	lppP	NC_016804.1	2560155	2560682	R	Differs from Rv2330c and Mb2357c by 1aa, A97S in BCG Pasteur, BCG Tokyo and BCG Mexico; putative lipoprotein	complement(2560155..2560682)	Mycobacterium bovis BCG str. Mexico	11810629
YP_005171801.1	CDS	BCGMEX_2341	NC_016804.1	2560757	2561143	D	hypothetical protein	2560757..2561143	Mycobacterium bovis BCG str. Mexico	11810630
YP_005171802.1	CDS	BCGMEX_2342	NC_016804.1	2561200	2561538	D	Differs from Rv2331A by 1aa, L46I in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2561200..2561538	Mycobacterium bovis BCG str. Mexico	11810631
YP_005171803.1	CDS	mez	NC_016804.1	2561568	2563214	D	Differs from Rv2332 by 2aa, D62E, L329I in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative [NAD] dependent malate oxidoreductase	2561568..2563214	Mycobacterium bovis BCG str. Mexico	11810632
YP_005171804.1	CDS	BCGMEX_2344c	NC_016804.1	2563211	2564782	R	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, single base insertion leads to a slightly longer product with a different COOH part compared to its homolog in Mycobacterium tuberculosis strain H37Rv (523 aa versus 537 aa). Also differs from Rv2333c by 2aa, Y69D, Q503H in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; putative integral membrane transport protein	complement(2563211..2564782)	Mycobacterium bovis BCG str. Mexico	11810633
YP_005171805.1	CDS	cysK1	NC_016804.1	2565257	2566189	D	cysteine synthase	2565257..2566189	Mycobacterium bovis BCG str. Mexico	11810634
YP_005171806.1	CDS	BCGMEX_2346	NC_016804.1	2566193	2566882	D	putative serine acetyltransferase	2566193..2566882	Mycobacterium bovis BCG str. Mexico	11810635
YP_005171807.1	CDS	BCGMEX_2347	NC_016804.1	2567298	2568266	D	hypothetical protein	2567298..2568266	Mycobacterium bovis BCG str. Mexico	11810636
YP_005171808.1	CDS	BCGMEX_2348c	NC_016804.1	2568330	2569448	R	Differs from Rv2337c by 1aa, V119G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2568330..2569448)	Mycobacterium bovis BCG str. Mexico	11810637
YP_005171809.1	CDS	moeW	NC_016804.1	2569568	2570524	R	putative molybdopterin biosynthesis protein moeW	complement(2569568..2570524)	Mycobacterium bovis BCG str. Mexico	11810638
YP_005171810.1	CDS	mmpL9a	NC_016804.1	2571155	2573635	D	In Mycobacterium tuberculosis strain H37Rv, mmpL9 exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a single base transition splits mmpL9 into 2 parts, mmpL9a and mmpL9b; putative transmembrane transport protein	2571155..2573635	Mycobacterium bovis BCG str. Mexico	11810639
YP_005171811.1	CDS	mmpL9b	NC_016804.1	2573648	2574043	D	In Mycobacterium tuberculosis strain H37Rv, mmpL9 exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a single base transition  splits mmpL9 into 2 parts, mmpL9a and mmpL9b; putative transmembrane transport protein	2573648..2574043	Mycobacterium bovis BCG str. Mexico	11810640
YP_005171812.1	CDS	PE_PGRS39	NC_016804.1	2574129	2575370	R	Differs from Rv2340c and Mb2369c by 1aa, T222D in BCG Pasteur, BCG Tokyo and BCG Mexico; PE-PGRS family protein	complement(2574129..2575370)	Mycobacterium bovis BCG str. Mexico	11810641
YP_005171813.1	CDS	lppQ	NC_016804.1	2576059	2576478	D	putative lipoprotein lppQ	2576059..2576478	Mycobacterium bovis BCG str. Mexico	11810643
YP_005171814.1	CDS	BCGMEX_2354	NC_016804.1	2576734	2576991	D	hypothetical protein	2576734..2576991	Mycobacterium bovis BCG str. Mexico	11810644
YP_005171815.1	CDS	dnaG	NC_016804.1	2576995	2578914	R	Differs from Rv2343c and Mb2372c by 1aa, R589G in BCG Pasteur, BCG Tokyo and BCG Mexico; putative DNA primase	complement(2576995..2578914)	Mycobacterium bovis BCG str. Mexico	11810645
YP_005171816.1	CDS	dgt	NC_016804.1	2578919	2580214	R	putative Deoxyguanosinetriphosphate triphosphohydrolase	complement(2578919..2580214)	Mycobacterium bovis BCG str. Mexico	11810646
YP_005171817.1	CDS	BCGMEX_2357	NC_016804.1	2580283	2582265	D	putative transmembrane protein	2580283..2582265	Mycobacterium bovis BCG str. Mexico	11810647
YP_005171818.1	CDS	esxO	NC_016804.1	2582350	2582532	R	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a large 8963 bp deletion (RD5) leads to the loss of the NH2 part of Rv2346c, and the 9 following CDSs up to Rv2356 including the 3 phospolipases C enzymes plcC, plcB and plcA, compared to the homolog in Mycobacterium tuberculosis H37Rv; putative EsaT-6 like protein 6	complement(2582350..2582532)	Mycobacterium bovis BCG str. Mexico	11810648
YP_005171819.1	CDS	PPE71	NC_016804.1	2582516	2583922	R	Compared to Mycobacterium bovis, there has been a 2579bp bp deletion, this has resulted in an in-frame fusion of the 5'-end of PPE40 with the 3'-end of PPE71 probably due to a homologous recombination event between codons 68 and 174 of PPE40 as the PPE40 and PPE71 genes have identical 5'-ends. Differs from Mb2376c(PPE71) by extra 11aa, insertion of A at position 68 due to 3bp insertion (present in PPE40) and STNVGSGNIG at position 307 due to 30 bp insertion. M. bovis BCG Pasteur, BCG Tokyo and BCG Mexico thus has three copies of tandem repeat STNVGSGNIG compared to two in Mb2376c. The 3'-end of PPE71 of M. bovis BCG Pasteur, BCG Tokyo and BCG Mexico have also been truncated as a result of the same deletion described in In Mycobacterium bovis, 8963 bp deletion (RD5); PPE family protein	complement(2582516..2583922)	Mycobacterium bovis BCG str. Mexico	11810649
YP_005171820.1	CDS	glyS	NC_016804.1	2584060	2585451	R	glycyl-tRNA synthetase	complement(2584060..2585451)	Mycobacterium bovis BCG str. Mexico	11810650
YP_005171821.1	CDS	BCGMEX_2361	NC_016804.1	2585633	2586040	D	putative transcriptional regulatory protein, probably ArsR-family	2585633..2586040	Mycobacterium bovis BCG str. Mexico	11810651
YP_005171822.1	CDS	furB	NC_016804.1	2586037	2586429	D	Differs from Rv2359 by 1aa, R64H in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative ferric uptake regulation protein	2586037..2586429	Mycobacterium bovis BCG str. Mexico	11810652
YP_005171823.1	CDS	BCGMEX_2363c	NC_016804.1	2586537	2586965	R	Differs from Rv2360c by 1aa, T66A in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2586537..2586965)	Mycobacterium bovis BCG str. Mexico	11810653
YP_005171824.1	CDS	uppS	NC_016804.1	2586965	2587855	R	undecaprenyl pyrophosphate synthetase	complement(2586965..2587855)	Mycobacterium bovis BCG str. Mexico	11810654
YP_005171825.1	CDS	recO	NC_016804.1	2587848	2588645	R	DNA recombination and repair protein	complement(2587848..2588645)	Mycobacterium bovis BCG str. Mexico	11810655
YP_005171826.1	CDS	amiA2	NC_016804.1	2588707	2590161	D	amidase	2588707..2590161	Mycobacterium bovis BCG str. Mexico	11810656
YP_005171827.1	CDS	era	NC_016804.1	2590158	2591060	R	GTP-binding protein	complement(2590158..2591060)	Mycobacterium bovis BCG str. Mexico	11810657
YP_005171828.1	CDS	BCGMEX_2368c	NC_016804.1	2591134	2591475	R	hypothetical protein	complement(2591134..2591475)	Mycobacterium bovis BCG str. Mexico	11810658
YP_005171829.1	CDS	BCGMEX_2369c	NC_016804.1	2591447	2592754	R	putative transmembrane protein	complement(2591447..2592754)	Mycobacterium bovis BCG str. Mexico	11810659
YP_005171830.1	CDS	BCGMEX_2370c	NC_016804.1	2592751	2593299	R	putative metalloprotease	complement(2592751..2593299)	Mycobacterium bovis BCG str. Mexico	11810660
YP_005171831.1	CDS	phoH1	NC_016804.1	2593303	2594361	R	putative phoH-like protein	complement(2593303..2594361)	Mycobacterium bovis BCG str. Mexico	11810661
YP_005171832.1	CDS	BCGMEX_2372c	NC_016804.1	2594333	2594635	R	hypothetical protein	complement(2594333..2594635)	Mycobacterium bovis BCG str. Mexico	11810662
YP_005171833.1	CDS	BCGMEX_2373c	NC_016804.1	2594632	2595945	R	hypothetical protein	complement(2594632..2595945)	Mycobacterium bovis BCG str. Mexico	11810663
YP_005171834.1	CDS	PE_PGRS40	NC_016804.1	2596140	2596325	D	PE-PGRS family protein	2596140..2596325	Mycobacterium bovis BCG str. Mexico	11810664
YP_005171835.1	CDS	rsmE	NC_016804.1	2596424	2597212	R	ribosomal RNA small subunit methyltransferase E	complement(2596424..2597212)	Mycobacterium bovis BCG str. Mexico	11810665
YP_005171836.1	CDS	dnaJ2	NC_016804.1	2597226	2598374	R	chaperone protein	complement(2597226..2598374)	Mycobacterium bovis BCG str. Mexico	11810666
YP_005171837.1	CDS	hrcA	NC_016804.1	2598449	2599480	R	Differs from Rv2374c and Mb2395c by 1aa, Q79R in BCG Pasteur, BCG Tokio and BCG Mexico; heat-inducible transcriptional repressor	complement(2598449..2599480)	Mycobacterium bovis BCG str. Mexico	11810667
YP_005171838.1	CDS	BCGMEX_2378	NC_016804.1	2599652	2599969	D	hypothetical protein	2599652..2599969	Mycobacterium bovis BCG str. Mexico	11810668
YP_005171839.1	CDS	cfp2	NC_016804.1	2599996	2600502	R	Low molecular weight antigen	complement(2599996..2600502)	Mycobacterium bovis BCG str. Mexico	11810669
YP_005171840.1	CDS	mbtH	NC_016804.1	2600602	2600817	R	Differs from Rv2377c by 1aa, A69V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative protein mbtH	complement(2600602..2600817)	Mycobacterium bovis BCG str. Mexico	11810670
YP_005171841.1	CDS	mbtG	NC_016804.1	2600795	2602090	R	L-lysine 6-monooxygenase	complement(2600795..2602090)	Mycobacterium bovis BCG str. Mexico	11810671
YP_005171842.1	CDS	mbtF	NC_016804.1	2602087	2606472	R	Differs from Rv2379c by 1aa, D589E in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; peptide synthetase	complement(2602087..2606472)	Mycobacterium bovis BCG str. Mexico	11810672
YP_005171843.1	CDS	mbtE	NC_016804.1	2606454	2611502	R	peptide synthetase	complement(2606454..2611502)	Mycobacterium bovis BCG str. Mexico	11810673
YP_005171844.1	CDS	mbtD	NC_016804.1	2611642	2614656	R	polyketide synthase	complement(2611642..2614656)	Mycobacterium bovis BCG str. Mexico	11810674
YP_005171845.1	CDS	mbtC	NC_016804.1	2614656	2615990	R	polyketide synthetase	complement(2614656..2615990)	Mycobacterium bovis BCG str. Mexico	11810675
YP_005171846.1	CDS	mbtB	NC_016804.1	2615980	2620224	R	Differs from Rv2383c by 2aa, Q264R, P1253T, and from Mb2404c by 1aa, P1253T BCG Pasteur, BCG Tokyo and BCG Mexico; phenyloxazoline synthase	complement(2615980..2620224)	Mycobacterium bovis BCG str. Mexico	11810676
YP_005171847.1	CDS	mbtA	NC_016804.1	2620323	2622020	D	bifunctional enzyme mbtA: salicyl-AMP ligase/salicyl-S-arcp synthetase	2620323..2622020	Mycobacterium bovis BCG str. Mexico	11810677
YP_005171848.1	CDS	mbtJ	NC_016804.1	2622116	2623036	D	putative acetyl hydrolase	2622116..2623036	Mycobacterium bovis BCG str. Mexico	11810678
YP_005171849.1	CDS	mbtI	NC_016804.1	2623040	2624392	R	isochorismate synthase	complement(2623040..2624392)	Mycobacterium bovis BCG str. Mexico	11810679
YP_005171850.1	CDS	BCGMEX_2390	NC_016804.1	2624845	2625054	D	hypothetical protein	2624845..2625054	Mycobacterium bovis BCG str. Mexico	11810680
YP_005171851.1	CDS	BCGMEX_2391	NC_016804.1	2625152	2626405	D	hypothetical protein	2625152..2626405	Mycobacterium bovis BCG str. Mexico	11810681
YP_005171852.1	CDS	hemN	NC_016804.1	2626402	2627529	R	Differs from Rv2388c, by 1aa, T184A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Coproporphyrinogen III oxidase	complement(2626402..2627529)	Mycobacterium bovis BCG str. Mexico	11810682
YP_005171853.1	CDS	rpfD	NC_016804.1	2627635	2628099	R	putative resuscitation-promoting factor	complement(2627635..2628099)	Mycobacterium bovis BCG str. Mexico	11810683
YP_005171854.1	CDS	BCGMEX_2394c	NC_016804.1	2628096	2628653	R	Differs from Mb2411c by 1aa, I33T in Mycobacterium tuberculosis, BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2628096..2628653)	Mycobacterium bovis BCG str. Mexico	11810684
YP_005171855.1	CDS	nirA	NC_016804.1	2629090	2630757	D	sulfite reductase	2629090..2630757	Mycobacterium bovis BCG str. Mexico	11810685
YP_005171856.1	CDS	cysH	NC_016804.1	2630754	2631518	D	phosphoadenosine phosphosulfate reductase	2630754..2631518	Mycobacterium bovis BCG str. Mexico	11810686
YP_005171857.1	CDS	BCGMEX_2397	NC_016804.1	2631515	2632414	D	In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, duplication of 54 bp segment after codon 3 leads to additional 18 aa and two tandem copies of motif PATMQSAAMLRSGAIEAP, compared to its ortholog in Mycobacterium tuberculosis strain H37Rv and in Mycobacterium bovis AF2122/97; hypothetical protein	2631515..2632414	Mycobacterium bovis BCG str. Mexico	11810687
YP_005171858.1	CDS	ggtB	NC_016804.1	2632451	2634382	D	Differs from Rv2394 by 1aa Q396R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative gamma-glutamyltranspeptidase	2632451..2634382	Mycobacterium bovis BCG str. Mexico	11810688
YP_005171859.1	CDS	BCGMEX_2399	NC_016804.1	2634513	2634953	D	In Mycobacterium tuberculosis strain H37Rv, Rv2395 exists as a single gene. In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, as in Mycobacterium bovis, a frameshift due to a single base insertion splits Rv2395 into 2 parts. The frameshift occurs after the 44th codon; putative integral membrane protein	2634513..2634953	Mycobacterium bovis BCG str. Mexico	11810689
YP_005171860.1	CDS	BCGMEX_2400	NC_016804.1	2634967	2636517	D	In Mycobacterium tuberculosis strain H37Rv, Rv2395 exists as a single gene. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a frameshift due to a single base insertion splits Rv2395 into 2 parts. BCG_2410 also differs from Rv2395 by 1aa, P396S in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; putative integral membrane protein	2634967..2636517	Mycobacterium bovis BCG str. Mexico	11810690
YP_005171861.1	CDS	PE_PGRS41	NC_016804.1	2637241	2638323	D	similar to Mb2418 of Mycobacterium bovis, including 3 bp deletion that leads to a slightly shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (360 aa versus 361 aa) due to deletion of A95 in BCG Pasteur, BCG Tokyo and BCG Mexico. Also differs from Rv2396 by 2aa, N26S, S324N in BCG Pasteur and BCG Mexico. Differs from Rv2396 by 3aa, N26S, C218G, S324N in BCG Tokyo; PE-PGRS family protein	2637241..2638323	Mycobacterium bovis BCG str. Mexico	11810691
YP_005171862.1	CDS	cysA1	NC_016804.1	2638348	2639403	R	sulfate/thiosulfate import ATP-binding protein	complement(2638348..2639403)	Mycobacterium bovis BCG str. Mexico	11810692
YP_005171863.1	CDS	cysW	NC_016804.1	2639420	2640238	R	Differs from Rv2398c by 1aa, A141G, and from Mb2420c by 1aa, R264H in BCG Pasteur, BCG Tokyo and BCG Mexico; putative sulfate-transport integral membrane protein ABC transporter	complement(2639420..2640238)	Mycobacterium bovis BCG str. Mexico	11810693
YP_005171864.1	CDS	cysT	NC_016804.1	2640235	2641086	R	putative sulfate-transport integral membrane protein ABC transporter	complement(2640235..2641086)	Mycobacterium bovis BCG str. Mexico	11810694
YP_005171865.1	CDS	subI	NC_016804.1	2641083	2642153	R	putative sulfate-binding lipoprotein	complement(2641083..2642153)	Mycobacterium bovis BCG str. Mexico	11810695
YP_005171866.1	CDS	BCGMEX_2406	NC_016804.1	2642167	2642496	D	hypothetical protein	2642167..2642496	Mycobacterium bovis BCG str. Mexico	11810696
YP_005171867.1	CDS	BCGMEX_2407c	NC_016804.1	2642481	2642684	R	hypothetical protein	complement(2642481..2642684)	Mycobacterium bovis BCG str. Mexico	11810697
YP_005171868.1	CDS	BCGMEX_2408	NC_016804.1	2642968	2644896	D	hypothetical protein	2642968..2644896	Mycobacterium bovis BCG str. Mexico	11810698
YP_005171869.1	CDS	lppR	NC_016804.1	2644974	2645729	R	Differs from Rv2403c by 1aa, L127V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative lipoprotein	complement(2644974..2645729)	Mycobacterium bovis BCG str. Mexico	11810699
YP_005171870.1	CDS	lepA	NC_016804.1	2645726	2647687	R	GTP-binding protein	complement(2645726..2647687)	Mycobacterium bovis BCG str. Mexico	11810700
YP_005171871.1	CDS	BCGMEX_2411	NC_016804.1	2647708	2648277	D	hypothetical protein	2647708..2648277	Mycobacterium bovis BCG str. Mexico	11810701
YP_005171872.1	CDS	BCGMEX_2412c	NC_016804.1	2648448	2648876	R	hypothetical protein	complement(2648448..2648876)	Mycobacterium bovis BCG str. Mexico	11810702
YP_005171873.1	CDS	BCGMEX_2413	NC_016804.1	2649136	2649978	D	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 21 bp in-frame insertion leads to a longer product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (280 aa versus 273 aa). Also differs from both Mb2430 and Rv2407 by 1aa, R222Q in BCG Pasteur, BCG Tokyo and BCG Mexico; ribonuclease Z	2649136..2649978	Mycobacterium bovis BCG str. Mexico	11810703
YP_005171874.1	CDS	BCGMEX_2414	NC_016804.1	2650571	2651290	D	putative PE family-related protein	2650571..2651290	Mycobacterium bovis BCG str. Mexico	11810704
YP_005171875.1	CDS	BCGMEX_2415c	NC_016804.1	2651048	2651887	R	hypothetical protein	complement(2651048..2651887)	Mycobacterium bovis BCG str. Mexico	11810705
YP_005171876.1	CDS	BCGMEX_2416c	NC_016804.1	2651887	2652864	R	hypothetical protein	complement(2651887..2652864)	Mycobacterium bovis BCG str. Mexico	11810706
YP_005171877.1	CDS	BCGMEX_2417c	NC_016804.1	2652864	2654519	R	hypothetical protein	complement(2652864..2654519)	Mycobacterium bovis BCG str. Mexico	11810707
YP_005171878.1	CDS	rpsT	NC_016804.1	2654629	2654889	D	30S ribosomal protein S20	2654629..2654889	Mycobacterium bovis BCG str. Mexico	11810708
YP_005171879.1	CDS	BCGMEX_2419c	NC_016804.1	2654905	2655873	R	hypothetical protein	complement(2654905..2655873)	Mycobacterium bovis BCG str. Mexico	11810709
YP_005171880.1	CDS	BCGMEX_2420c	NC_016804.1	2655886	2657430	R	In Mycobacterium bovis, a single base insertion leads to a longer product with a different COOH part compared to its homolog in Mycobacterium tuberculosis H37Rv, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico (523 aa versus 514 aa); hypothetical protein	complement(2655886..2657430)	Mycobacterium bovis BCG str. Mexico	11810710
YP_005171881.1	CDS	BCGMEX_2421c	NC_016804.1	2657445	2658338	R	Differs from Rv2415c by 1aa, L291R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2657445..2658338)	Mycobacterium bovis BCG str. Mexico	11810711
YP_005171882.1	CDS	eis	NC_016804.1	2658678	2659904	R	Differs from Mb2439c by 1aa, T76A in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Enhanced intracellular survival protein	complement(2658678..2659904)	Mycobacterium bovis BCG str. Mexico	11810712
YP_005171883.1	CDS	BCGMEX_2423c	NC_016804.1	2660026	2660868	R	hypothetical protein	complement(2660026..2660868)	Mycobacterium bovis BCG str. Mexico	11810713
YP_005171884.1	CDS	BCGMEX_2424c	NC_016804.1	2660949	2661692	R	hypothetical protein	complement(2660949..2661692)	Mycobacterium bovis BCG str. Mexico	11810714
YP_005171885.1	CDS	BCGMEX_2425c	NC_016804.1	2661682	2662353	R	Differs from Mb2442c by 1aa, A165V in Mycobacterium tuberculosis, BCG Pasteur, BCG Tokyo and BCG Mexico; putative phosphoglycerate mutase	complement(2661682..2662353)	Mycobacterium bovis BCG str. Mexico	11810715
YP_005171886.1	CDS	BCGMEX_2426c	NC_016804.1	2662350	2662733	R	Differs from Rv2420c and Mb2443c by insertion of 1aa, Pro, at position 126 due to 3bp insertion in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2662350..2662733)	Mycobacterium bovis BCG str. Mexico	11810716
YP_005171887.1	CDS	nadD	NC_016804.1	2662730	2663365	R	Differs from Rv2421c by 1aa, S180G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; nicotinate-nucleotide adenylyltransferase	complement(2662730..2663365)	Mycobacterium bovis BCG str. Mexico	11810717
YP_005171888.1	CDS	BCGMEX_2428	NC_016804.1	2663640	2663912	D	hypothetical protein	2663640..2663912	Mycobacterium bovis BCG str. Mexico	11810718
YP_005171889.1	CDS	BCGMEX_2429	NC_016804.1	2664154	2665200	D	hypothetical protein	2664154..2665200	Mycobacterium bovis BCG str. Mexico	11810719
YP_005171890.1	CDS	BCGMEX_2430c	NC_016804.1	2665333	2666025	R	In Mycobacterium tuberculosis strain H37Rv, Rv2424c exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a 2bp deletion splits Rv2424c into 2 parts. Differs from Rv2424c by 3aa, I172T, A173T and Y192H; putative transposase, IS1558	complement(2665333..2666025)	Mycobacterium bovis BCG str. Mexico	11810720
YP_005171891.1	CDS	BCGMEX_2431c	NC_016804.1	2666039	2666332	R	In Mycobacterium tuberculosis strain H37Rv, Rv2424c exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a 2bp deletion splits Rv2424c into 2 parts; putative transposase	complement(2666039..2666332)	Mycobacterium bovis BCG str. Mexico	11810721
YP_005171892.1	CDS	BCGMEX_2432c	NC_016804.1	2666421	2667863	R	hypothetical protein	complement(2666421..2667863)	Mycobacterium bovis BCG str. Mexico	11810722
YP_005171893.1	CDS	BCGMEX_2433c	NC_016804.1	2667863	2668738	R	Differs from Rv2426c by 1aa, L113F in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2667863..2668738)	Mycobacterium bovis BCG str. Mexico	11810723
YP_005171894.1	CDS	proA	NC_016804.1	2668765	2670012	R	gamma-glutamyl phosphate reductase	complement(2668765..2670012)	Mycobacterium bovis BCG str. Mexico	11810724
YP_005171895.1	CDS	ahpC	NC_016804.1	2670728	2671315	D	alkyl hydroperoxide reductase protein C	2670728..2671315	Mycobacterium bovis BCG str. Mexico	11810727
YP_005171896.1	CDS	ahpD	NC_016804.1	2671341	2671874	D	alkylhydroperoxidase reductase protein D	2671341..2671874	Mycobacterium bovis BCG str. Mexico	11810728
YP_005171897.1	CDS	PPE41	NC_016804.1	2671871	2672455	R	PPE family protein	complement(2671871..2672455)	Mycobacterium bovis BCG str. Mexico	11810729
YP_005171898.1	CDS	PE25	NC_016804.1	2672502	2672801	R	PE family protein	complement(2672502..2672801)	Mycobacterium bovis BCG str. Mexico	11810730
YP_005171899.1	CDS	BCGMEX_2441c	NC_016804.1	2672972	2673382	R	hypothetical protein	complement(2672972..2673382)	Mycobacterium bovis BCG str. Mexico	11810731
YP_005171900.1	CDS	BCGMEX_2442c	NC_016804.1	2673379	2673669	R	hypothetical protein	complement(2673379..2673669)	Mycobacterium bovis BCG str. Mexico	11810732
YP_005171901.1	CDS	BCGMEX_2443c	NC_016804.1	2673650	2675095	R	putative transmembrane protein	complement(2673650..2675095)	Mycobacterium bovis BCG str. Mexico	11810733
YP_005171902.1	CDS	BCGMEX_2444c	NC_016804.1	2675092	2677284	R	putative adenylate cyclase	complement(2675092..2677284)	Mycobacterium bovis BCG str. Mexico	11810734
YP_005171903.1	CDS	rbsK	NC_016804.1	2677765	2678679	D	Differs from Rv2436 by 2aa, V274A, A282V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; ribokinase	2677765..2678679	Mycobacterium bovis BCG str. Mexico	11810735
YP_005171904.1	CDS	BCGMEX_2446	NC_016804.1	2678911	2679330	D	hypothetical protein	2678911..2679330	Mycobacterium bovis BCG str. Mexico	11810736
YP_005171905.1	CDS	nadE	NC_016804.1	2679327	2681366	R	NAD synthetase	complement(2679327..2681366)	Mycobacterium bovis BCG str. Mexico	11810737
YP_005171906.1	CDS	BCGMEX_2448	NC_016804.1	2681244	2681522	D	hypothetical protein	2681244..2681522	Mycobacterium bovis BCG str. Mexico	11810738
YP_005171907.1	CDS	proB	NC_016804.1	2681652	2682782	R	Differs from Rv2439c by 1aa, S226A in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; glutamate 5-kinase	complement(2681652..2682782)	Mycobacterium bovis BCG str. Mexico	11810739
YP_005171908.1	CDS	obg	NC_016804.1	2682782	2684221	R	GTPase	complement(2682782..2684221)	Mycobacterium bovis BCG str. Mexico	11810740
YP_005171909.1	CDS	rpmA	NC_016804.1	2684307	2684567	R	50S ribosomal protein L27	complement(2684307..2684567)	Mycobacterium bovis BCG str. Mexico	11810741
YP_005171910.1	CDS	rplU	NC_016804.1	2684582	2684896	R	50S ribosomal protein L21	complement(2684582..2684896)	Mycobacterium bovis BCG str. Mexico	11810742
YP_005171911.1	CDS	dctA	NC_016804.1	2685244	2686719	D	putative C4-dicarboxylate-transport transmembrane protein	2685244..2686719	Mycobacterium bovis BCG str. Mexico	11810743
YP_005171912.1	CDS	rne	NC_016804.1	2686658	2689519	R	putative ribonuclease E	complement(2686658..2689519)	Mycobacterium bovis BCG str. Mexico	11810744
YP_005171913.1	CDS	ndkA	NC_016804.1	2689849	2690259	R	nucleoside diphosphate kinase	complement(2689849..2690259)	Mycobacterium bovis BCG str. Mexico	11810745
YP_005171914.1	CDS	BCGMEX_2456c	NC_016804.1	2690302	2690673	R	putative integral membrane protein	complement(2690302..2690673)	Mycobacterium bovis BCG str. Mexico	11810746
YP_005171915.1	CDS	folC	NC_016804.1	2690670	2692133	R	putative polylpolyglutamate synthase	complement(2690670..2692133)	Mycobacterium bovis BCG str. Mexico	11810747
YP_005171916.1	CDS	valS	NC_016804.1	2692130	2694760	R	valyl-tRNA synthetase	complement(2692130..2694760)	Mycobacterium bovis BCG str. Mexico	11810748
YP_005171917.1	CDS	BCGMEX_2459c	NC_016804.1	2694848	2696107	R	Differs from Rv2449c and Mb2476c by 1aa, C273R in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2694848..2696107)	Mycobacterium bovis BCG str. Mexico	11810749
YP_005171918.1	CDS	rpfE	NC_016804.1	2696197	2696715	R	Differs from Rv2450c by 1aa, Q126R in BCG Pasteur and BCG Mexico; putative resuscitation-promoting factor	complement(2696197..2696715)	Mycobacterium bovis BCG str. Mexico	11810750
YP_005171919.1	CDS	BCGMEX_2461	NC_016804.1	2696797	2697195	D	Differs from Rv2451 by 1aa, D63N in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; putative proline and serine rich protein	2696797..2697195	Mycobacterium bovis BCG str. Mexico	11810751
YP_005171920.1	CDS	BCGMEX_2462c	NC_016804.1	2697383	2697529	R	hypothetical protein	complement(2697383..2697529)	Mycobacterium bovis BCG str. Mexico	11810752
YP_005171921.1	CDS	mobA	NC_016804.1	2697553	2698158	R	putative molybdopterin-guanine dinucleotide biosynthesis protein A	complement(2697553..2698158)	Mycobacterium bovis BCG str. Mexico	11810753
YP_005171922.1	CDS	BCGMEX_2464c	NC_016804.1	2698160	2699281	R	2-oxoglutarate ferrodoxin oxidoreductase subunit beta	complement(2698160..2699281)	Mycobacterium bovis BCG str. Mexico	11810754
YP_005171923.1	CDS	BCGMEX_2465c	NC_016804.1	2699278	2701239	R	putative oxidoreductase subunit alpha	complement(2699278..2701239)	Mycobacterium bovis BCG str. Mexico	11810755
YP_005171924.1	CDS	BCGMEX_2466c	NC_016804.1	2701471	2702727	R	putative integral membrane transport protein	complement(2701471..2702727)	Mycobacterium bovis BCG str. Mexico	11810756
YP_005171925.1	CDS	clpX	NC_016804.1	2702743	2704023	R	Differs from Rv2457c and Mb2484c by 1aa, A229G in BCG Pasteur, BCG Tokyo and BCG Mexico. Also differs from Rv2457c and Mb2484c by 1aa, A403V in BCG Mexico; ATP-dependent Clp protease ATP-binding subunit clpX	complement(2702743..2704023)	Mycobacterium bovis BCG str. Mexico	11810757
YP_005171926.1	CDS	mmuM	NC_016804.1	2704314	2705222	D	Differs from Rv2458 by 1aa, C125Y in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; homocysteine S-methyltransferase	2704314..2705222	Mycobacterium bovis BCG str. Mexico	11810758
YP_005171927.1	CDS	BCGMEX_2469	NC_016804.1	2705389	2706915	D	Differs from Mb2486 by 1aa, M55I in Mycobacterium tuberculosis, BCG Pasteur, BCG Tokyo and BCG Mexico; putative integral membrane transport protein	2705389..2706915	Mycobacterium bovis BCG str. Mexico	11810759
YP_005171928.1	CDS	clpP2	NC_016804.1	2707066	2707710	R	ATP-dependent Clp protease proteolytic subunit	complement(2707066..2707710)	Mycobacterium bovis BCG str. Mexico	11810760
YP_005171929.1	CDS	clpP	NC_016804.1	2707707	2708309	R	ATP-dependent Clp protease proteolytic subunit	complement(2707707..2708309)	Mycobacterium bovis BCG str. Mexico	11810761
YP_005171930.1	CDS	tig	NC_016804.1	2708426	2709826	R	Differs from Rv2462c by 1aa, L118P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; trigger factor Tig	complement(2708426..2709826)	Mycobacterium bovis BCG str. Mexico	11810762
YP_005171931.1	CDS	lipP	NC_016804.1	2710190	2711374	D	putative esterase/lipase	2710190..2711374	Mycobacterium bovis BCG str. Mexico	11810765
YP_005171932.1	CDS	BCGMEX_2474c	NC_016804.1	2711394	2712200	R	DNA glycosylase	complement(2711394..2712200)	Mycobacterium bovis BCG str. Mexico	11810766
YP_005171933.1	CDS	rpiB	NC_016804.1	2712206	2712694	R	ribose 5-phosphate isomerase B	complement(2712206..2712694)	Mycobacterium bovis BCG str. Mexico	11810767
YP_005171934.1	CDS	BCGMEX_2476c	NC_016804.1	2712796	2713419	R	hypothetical protein	complement(2712796..2713419)	Mycobacterium bovis BCG str. Mexico	11810768
YP_005171935.1	CDS	pepN	NC_016804.1	2713521	2716106	D	Differs from Rv2467 and Mb2494 by 1aa, M18I in Mycobacterium bovis BCG Pasteur; putative aminopeptidase N	2713521..2716106	Mycobacterium bovis BCG str. Mexico	11810769
YP_005171936.1	CDS	BCGMEX_2478c	NC_016804.1	2716179	2716682	R	hypothetical protein	complement(2716179..2716682)	Mycobacterium bovis BCG str. Mexico	11810770
YP_005171937.1	CDS	BCGMEX_2479c	NC_016804.1	2716633	2716866	R	hypothetical protein	complement(2716633..2716866)	Mycobacterium bovis BCG str. Mexico	11810771
YP_005171938.1	CDS	BCGMEX_2480c	NC_016804.1	2716902	2717570	R	Differs from Rv2469c by 2aa, G28S, S99A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2716902..2717570)	Mycobacterium bovis BCG str. Mexico	11810772
YP_005171939.1	CDS	glbO	NC_016804.1	2717713	2718099	D	Oxygen-binding protein; putative globin	2717713..2718099	Mycobacterium bovis BCG str. Mexico	11810773
YP_005171940.1	CDS	aglA	NC_016804.1	2718099	2719739	D	Differs from Rv2471 by 1aa, S206W in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative alpha-glucosidase	2718099..2719739	Mycobacterium bovis BCG str. Mexico	11810774
YP_005171941.1	CDS	BCGMEX_2483	NC_016804.1	2719807	2720100	D	hypothetical protein	2719807..2720100	Mycobacterium bovis BCG str. Mexico	11810775
YP_005171942.1	CDS	BCGMEX_2484	NC_016804.1	2720103	2720819	D	hypothetical protein	2720103..2720819	Mycobacterium bovis BCG str. Mexico	11810776
YP_005171943.1	CDS	BCGMEX_2485c	NC_016804.1	2720851	2721504	R	Differs from Mb2501c by 1aa, A30V in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2720851..2721504)	Mycobacterium bovis BCG str. Mexico	11810777
YP_005171944.1	CDS	BCGMEX_2486c	NC_016804.1	2721510	2721926	R	hypothetical protein	complement(2721510..2721926)	Mycobacterium bovis BCG str. Mexico	11810778
YP_005171945.1	CDS	gdh	NC_016804.1	2721923	2726794	R	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 3 bp deletion leads to a slightly shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (1623 aa versus 1624 aa). Differs from Rv2476c by 2aa, loss of A501 due to 3 bp deletion and G1042S; putative NAD-dependent glutamate dehydrogenase	complement(2721923..2726794)	Mycobacterium bovis BCG str. Mexico	11810779
YP_005171946.1	CDS	BCGMEX_2488c	NC_016804.1	2726898	2728574	R	Differs from Rv2477c and Mb2504c by 1aa, K372T in BCG Pasteur, BCG Tokyo and BCG Mexico; putative ABC transporter ATP-binding protein	complement(2726898..2728574)	Mycobacterium bovis BCG str. Mexico	11810780
YP_005171947.1	CDS	BCGMEX_2489c	NC_016804.1	2728655	2729140	R	ssDNA-binding protein	complement(2728655..2729140)	Mycobacterium bovis BCG str. Mexico	11810781
YP_005171948.1	CDS	BCGMEX_2490	NC_016804.1	2729749	2730072	R	hypothetical protein	complement(2729749..2730072)	Mycobacterium bovis BCG str. Mexico	11810782
YP_005171949.1	CDS	plsB2	NC_016804.1	2730088	2732457	R	Differs from Rv2482c by 1aa, R778C, and from Mb2507c by 1aa, N579S in BCG Pasteur, BCG Tokyo and BCG Mexico; glycerol-3-phosphate acyltransferase	complement(2730088..2732457)	Mycobacterium bovis BCG str. Mexico	11810783
YP_005171950.1	CDS	plsC	NC_016804.1	2732454	2734196	R	Differs from Rv2483c by 1aa, G189C in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative L-3-phosphoserine phosphatase, 1-acyl-sn-glycerol-3-phosphate acyltransferase; putative transmembrane phospholipid biosynthesis enzyme	complement(2732454..2734196)	Mycobacterium bovis BCG str. Mexico	11810784
YP_005171951.1	CDS	BCGMEX_2493c	NC_016804.1	2734193	2735668	R	Differs from Rv2484c by 1aa, D466G in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2734193..2735668)	Mycobacterium bovis BCG str. Mexico	11810785
YP_005171952.1	CDS	lipQ	NC_016804.1	2735897	2737162	R	putative carboxylesterase	complement(2735897..2737162)	Mycobacterium bovis BCG str. Mexico	11810786
YP_005171953.1	CDS	echA14	NC_016804.1	2737524	2738294	D	Enoyl-CoA hydratase	2737524..2738294	Mycobacterium bovis BCG str. Mexico	11810788
YP_005171954.1	CDS	PE_PGRS42ab	NC_016804.1	2738974	2740557	R	In Mycobacterium tuberculosis strain H37Rv, PE_PGRS42 exists as a single gene. In Mycobacterium bovis, 2 frameshifts, the first due to a single base insertion and the second due to a single base deletion splits PE_PGRS42 into 3 parts, PE_PGRS42a and PE_PGRS42b and PE_PGRS42d while in Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, PE_PGRS42a and PE_GRRS42b are fused; PE-PGRS family protein	complement(2738974..2740557)	Mycobacterium bovis BCG str. Mexico	11810790
YP_005171955.1	CDS	BCGMEX_2498c	NC_016804.1	2740639	2744052	R	Differs from Rv2488c and Mb2515c by 1aa E535D in BCG Pasteur, BCG Tokyo and BCG Mexico; putative transcriptional regulatory protein, LuxR family	complement(2740639..2744052)	Mycobacterium bovis BCG str. Mexico	11810791
YP_005171956.1	CDS	BCGMEX_2499c	NC_016804.1	2744018	2744317	R	hypothetical protein	complement(2744018..2744317)	Mycobacterium bovis BCG str. Mexico	11810792
YP_005171957.1	CDS	PE_PGRS43b	NC_016804.1	2744426	2747878	R	In Mycobacterium tuberculosis strain H37Rv, PE_PGRS43 exists as a single gene. In Mycobacterium bovis, a frameshift due to a 8 bp insertion splits PE_PGRS43 into 2 parts, PE_PGRS43a and PE_PGRS43b while in Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 1bp insertion causes a different frameshift but at same place, 3bp:GCC deletion in BCG Pasteur and BCG Mexico after 2409:G of Mycobacterium bovis, 1bp:T deletion in BCG Tokyo at 2931:T of Mycobacterium bovis; PE-PGRS family protein	complement(2744426..2747878)	Mycobacterium bovis BCG str. Mexico	11810793
YP_005171958.1	CDS	PE_PGRS43a	NC_016804.1	2747970	2749397	R	In Mycobacterium tuberculosis strain H37Rv, PE_PGRS43 exists as a single gene. In Mycobacterium bovis, a frameshift due to a 8 bp insertion splits PE_PGRS43 into 2 parts, PE_PGRS43a and PE_PGRS43b while in Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 1bp insertion causes a different frameshift but at same place, 3bp:GCC deletion in BCG Pasteur and BCG Mexico after 2409:G of Mycobacterium bovis, 1bp:T deletion in BCG Tokyo at 2931:T of Mycobacterium bovis.; PE-PGRS family protein	complement(2747970..2749397)	Mycobacterium bovis BCG str. Mexico	11810794
YP_005171959.1	CDS	BCGMEX_2502c	NC_016804.1	2749484	2749675	R	hypothetical protein	complement(2749484..2749675)	Mycobacterium bovis BCG str. Mexico	11810795
YP_005171960.1	CDS	BCGMEX_2503	NC_016804.1	2749826	2750449	D	hypothetical protein	2749826..2750449	Mycobacterium bovis BCG str. Mexico	11810796
YP_005171961.1	CDS	BCGMEX_2504	NC_016804.1	2750439	2751191	D	Differs from Rv2492 by 1aa, D70A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2750439..2751191	Mycobacterium bovis BCG str. Mexico	11810797
YP_005171962.1	CDS	BCGMEX_2505	NC_016804.1	2751244	2751465	D	hypothetical protein	2751244..2751465	Mycobacterium bovis BCG str. Mexico	11810798
YP_005171963.1	CDS	BCGMEX_2506	NC_016804.1	2751471	2751896	D	hypothetical protein	2751471..2751896	Mycobacterium bovis BCG str. Mexico	11810799
YP_005171964.1	CDS	pdhC	NC_016804.1	2751919	2753100	R	Differs from Rv2495c by 2aa, A107T, W208R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; dihydrolipoamide acyltransferase E2 component	complement(2751919..2753100)	Mycobacterium bovis BCG str. Mexico	11810800
YP_005171965.1	CDS	pdhB	NC_016804.1	2753097	2754143	R	Differs from Rv2496c by 1aa, S201G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative pyruvate dehydrogenase E1 component subunit beta	complement(2753097..2754143)	Mycobacterium bovis BCG str. Mexico	11810801
YP_005171966.1	CDS	pdhA	NC_016804.1	2754154	2755257	R	Pyruvate dehydrogenase E1 component subunit alpha	complement(2754154..2755257)	Mycobacterium bovis BCG str. Mexico	11810802
YP_005171967.1	CDS	citE	NC_016804.1	2755516	2756337	R	putative citrate (Pro-3s)	complement(2755516..2756337)	Mycobacterium bovis BCG str. Mexico	11810803
YP_005171968.1	CDS	BCGMEX_2511c	NC_016804.1	2756334	2756891	R	putative oxidase regulatory-related protein	complement(2756334..2756891)	Mycobacterium bovis BCG str. Mexico	11810804
YP_005171969.1	CDS	fadE19	NC_016804.1	2756888	2758072	R	putative acyl-CoA dehydrogenase	complement(2756888..2758072)	Mycobacterium bovis BCG str. Mexico	11810805
YP_005171970.1	CDS	accA1	NC_016804.1	2758077	2760041	R	acetyl-/propionyl-coenzyme A carboxylase alpha chain	complement(2758077..2760041)	Mycobacterium bovis BCG str. Mexico	11810806
YP_005171971.1	CDS	accD1	NC_016804.1	2760046	2761635	R	Differs from Rv2502c by 2aa, S77G, L343F in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative acetyl-/propionyl-coa carboxylase subunit beta	complement(2760046..2761635)	Mycobacterium bovis BCG str. Mexico	11810807
YP_005171972.1	CDS	scoB	NC_016804.1	2761632	2762288	R	Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit beta	complement(2761632..2762288)	Mycobacterium bovis BCG str. Mexico	11810808
YP_005171973.1	CDS	scoA	NC_016804.1	2762285	2763031	R	Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit alpha	complement(2762285..2763031)	Mycobacterium bovis BCG str. Mexico	11810809
YP_005171974.1	CDS	fadD35	NC_016804.1	2763114	2764757	R	Differs from Rv2505c and Mb2533c by 1aa, A381T in BCG Pasteur, BCG Tokyo and BCG Mexico; Fatty-acid-CoA ligase	complement(2763114..2764757)	Mycobacterium bovis BCG str. Mexico	11810810
YP_005171975.1	CDS	BCGMEX_2518	NC_016804.1	2764873	2765520	D	TetR family transcriptional regulator	2764873..2765520	Mycobacterium bovis BCG str. Mexico	11810811
YP_005171976.1	CDS	BCGMEX_2519	NC_016804.1	2765599	2766420	D	hypothetical protein	2765599..2766420	Mycobacterium bovis BCG str. Mexico	11810812
YP_005171977.1	CDS	BCGMEX_2520c	NC_016804.1	2766417	2767754	R	putative integral membrane leucine and alanine rich protein	complement(2766417..2767754)	Mycobacterium bovis BCG str. Mexico	11810813
YP_005171978.1	CDS	BCGMEX_2521	NC_016804.1	2767839	2768645	D	putative short-chain dehydrogenase/reductase	2767839..2768645	Mycobacterium bovis BCG str. Mexico	11810814
YP_005171979.1	CDS	BCGMEX_2522c	NC_016804.1	2768649	2770250	R	hypothetical protein	complement(2768649..2770250)	Mycobacterium bovis BCG str. Mexico	11810815
YP_005171980.1	CDS	orn	NC_016804.1	2770318	2770965	D	oligoribonuclease	2770318..2770965	Mycobacterium bovis BCG str. Mexico	11810816
YP_005171981.1	CDS	BCGMEX_2524c	NC_016804.1	2771717	2772964	R	Transposase for insertion sequence element IS1081	complement(2771717..2772964)	Mycobacterium bovis BCG str. Mexico	11810818
YP_005171982.1	CDS	BCGMEX_2525	NC_016804.1	2772964	2773101	D	hypothetical protein	2772964..2773101	Mycobacterium bovis BCG str. Mexico	11810819
YP_005171983.1	CDS	BCGMEX_2526	NC_016804.1	2773322	2773744	D	Differs from Rv2513 by 1aa, K122T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2773322..2773744	Mycobacterium bovis BCG str. Mexico	11810820
YP_005171984.1	CDS	BCGMEX_2527c	NC_016804.1	2774038	2774499	R	hypothetical protein	complement(2774038..2774499)	Mycobacterium bovis BCG str. Mexico	11810821
YP_005171985.1	CDS	BCGMEX_2528c	NC_016804.1	2774505	2775752	R	hypothetical protein	complement(2774505..2775752)	Mycobacterium bovis BCG str. Mexico	11810822
YP_005171986.1	CDS	BCGMEX_2529c	NC_016804.1	2775871	2776674	R	hypothetical protein	complement(2775871..2776674)	Mycobacterium bovis BCG str. Mexico	11810823
YP_005171987.1	CDS	BCGMEX_2530c	NC_016804.1	2776671	2776922	R	hypothetical protein	complement(2776671..2776922)	Mycobacterium bovis BCG str. Mexico	11810824
YP_005171988.1	CDS	lppS	NC_016804.1	2777270	2778496	R	putative lipoprotein	complement(2777270..2778496)	Mycobacterium bovis BCG str. Mexico	11810825
YP_005171989.1	CDS	PE26	NC_016804.1	2778946	2780424	D	similar to Rv2519 but differs from Mb2548 by 1aa, G173A, due to 2bp substitution  in BCG Pasteur, BCG Tokyo and BCG Mexico; PE family protein	2778946..2780424	Mycobacterium bovis BCG str. Mexico	11810827
YP_005171990.1	CDS	BCGMEX_2533c	NC_016804.1	2780549	2780776	R	membrane protein	complement(2780549..2780776)	Mycobacterium bovis BCG str. Mexico	11810828
YP_005171991.1	CDS	bcp	NC_016804.1	2780845	2781318	D	Differs from Mb2550 by 1aa, V122M in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative bacterioferritin comigratory protein	2780845..2781318	Mycobacterium bovis BCG str. Mexico	11810829
YP_005171992.1	CDS	BCGMEX_2535c	NC_016804.1	2781290	2782702	R	hypothetical protein	complement(2781290..2782702)	Mycobacterium bovis BCG str. Mexico	11810830
YP_005171993.1	CDS	acpS	NC_016804.1	2782699	2783091	R	holo-[acyl-carrier protein] synthase	complement(2782699..2783091)	Mycobacterium bovis BCG str. Mexico	11810831
YP_005171994.1	CDS	fas	NC_016804.1	2783284	2792493	R	putative fatty acid synthase	complement(2783284..2792493)	Mycobacterium bovis BCG str. Mexico	11810832
YP_005171995.1	CDS	BCGMEX_2538c	NC_016804.1	2793013	2793735	R	hypothetical protein	complement(2793013..2793735)	Mycobacterium bovis BCG str. Mexico	11810833
YP_005171996.1	CDS	BCGMEX_2539	NC_016804.1	2794252	2794479	D	hypothetical protein	2794252..2794479	Mycobacterium bovis BCG str. Mexico	11810834
YP_005171997.1	CDS	BCGMEX_2540	NC_016804.1	2794476	2794877	D	hypothetical protein	2794476..2794877	Mycobacterium bovis BCG str. Mexico	11810835
YP_005171998.1	CDS	mrr	NC_016804.1	2794912	2795832	R	Differs from Rv2528c by 1aa, L94P, and Mb2557c by 2aa, L94P, E259Q in BCG Pasteur, BCG Tokyo and BCG Mexico; putative restriction system protein	complement(2794912..2795832)	Mycobacterium bovis BCG str. Mexico	11810836
YP_005171999.1	CDS	BCGMEX_2542	NC_016804.1	2796036	2797427	D	Differs from Mb2558 by 1aa, G94E in Mycobacterium tuberculosis H37Rv, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2796036..2797427	Mycobacterium bovis BCG str. Mexico	11810837
YP_005172000.1	CDS	BCGMEX_2543c	NC_016804.1	2797428	2797847	R	hypothetical protein	complement(2797428..2797847)	Mycobacterium bovis BCG str. Mexico	11810838
YP_005172001.1	CDS	BCGMEX_2544c	NC_016804.1	2797844	2798068	R	hypothetical protein	complement(2797844..2798068)	Mycobacterium bovis BCG str. Mexico	11810839
YP_005172002.1	CDS	BCGMEX_2545c	NC_016804.1	2798099	2800942	R	putative amino acid decarboxylase	complement(2798099..2800942)	Mycobacterium bovis BCG str. Mexico	11810840
YP_005172003.1	CDS	BCGMEX_2546c	NC_016804.1	2801014	2801415	R	hypothetical protein	complement(2801014..2801415)	Mycobacterium bovis BCG str. Mexico	11810841
YP_005172004.1	CDS	nusB	NC_016804.1	2801415	2801885	R	Differs from Rv2533c by 1aa, D19A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; N utilization substance protein B-like protein	complement(2801415..2801885)	Mycobacterium bovis BCG str. Mexico	11810842
YP_005172005.1	CDS	efp	NC_016804.1	2801888	2802451	R	elongation factor P	complement(2801888..2802451)	Mycobacterium bovis BCG str. Mexico	11810843
YP_005172006.1	CDS	pepQ	NC_016804.1	2802461	2803579	R	putative cytoplasmic peptidase	complement(2802461..2803579)	Mycobacterium bovis BCG str. Mexico	11810844
YP_005172007.1	CDS	BCGMEX_2550	NC_016804.1	2803613	2804305	D	putative transmembrane protein	2803613..2804305	Mycobacterium bovis BCG str. Mexico	11810845
YP_005172008.1	CDS	aroD	NC_016804.1	2804309	2804752	R	3-dehydroquinate dehydratase	complement(2804309..2804752)	Mycobacterium bovis BCG str. Mexico	11810846
YP_005172009.1	CDS	aroB	NC_016804.1	2804749	2805837	R	3-dehydroquinate synthase	complement(2804749..2805837)	Mycobacterium bovis BCG str. Mexico	11810847
YP_005172010.1	CDS	aroK	NC_016804.1	2805834	2806364	R	shikimate kinase	complement(2805834..2806364)	Mycobacterium bovis BCG str. Mexico	11810848
YP_005172011.1	CDS	aroF	NC_016804.1	2806368	2807573	R	chorismate synthase	complement(2806368..2807573)	Mycobacterium bovis BCG str. Mexico	11810849
YP_005172012.1	CDS	BCGMEX_2555	NC_016804.1	2807588	2807995	D	hypothetical protein	2807588..2807995	Mycobacterium bovis BCG str. Mexico	11810850
YP_005172013.1	CDS	BCGMEX_2556	NC_016804.1	2808291	2809502	D	Differs from Rv2542 by 1aa, A211T in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2808291..2809502	Mycobacterium bovis BCG str. Mexico	11810851
YP_005172014.1	CDS	lppA	NC_016804.1	2809629	2810288	D	putative lipoprotein	2809629..2810288	Mycobacterium bovis BCG str. Mexico	11810852
YP_005172015.1	CDS	lprR	NC_016804.1	2810285	2810944	D	In Mycobacterium bovis, Mycobacterium bovisBCG Pasteur, BCG Tokyo and BCG Mexico, there is a 656 bp insertion, relative to Mycobacterium tuberculosis strain H37Rv, which leads to lppR gene, probably by duplication of llpA or lppB; putative lipoprotein	2810285..2810944	Mycobacterium bovis BCG str. Mexico	11810853
YP_005172016.1	CDS	lppB	NC_016804.1	2810941	2811603	D	putative lipoprotein	2810941..2811603	Mycobacterium bovis BCG str. Mexico	11810854
YP_005172017.1	CDS	BCGMEX_2560	NC_016804.1	2811600	2811878	D	hypothetical protein	2811600..2811878	Mycobacterium bovis BCG str. Mexico	11810855
YP_005172018.1	CDS	BCGMEX_2561	NC_016804.1	2811971	2812384	D	hypothetical protein	2811971..2812384	Mycobacterium bovis BCG str. Mexico	11810856
YP_005172019.1	CDS	BCGMEX_2562	NC_016804.1	2812423	2812680	D	DNA-binding protein, CopG family	2812423..2812680	Mycobacterium bovis BCG str. Mexico	11810857
YP_005172020.1	CDS	BCGMEX_2563	NC_016804.1	2812677	2813054	D	hypothetical protein	2812677..2813054	Mycobacterium bovis BCG str. Mexico	11810858
YP_005172021.1	CDS	BCGMEX_2564c	NC_016804.1	2813070	2813444	R	hypothetical protein	complement(2813070..2813444)	Mycobacterium bovis BCG str. Mexico	11810859
YP_005172022.1	CDS	BCGMEX_2565c	NC_016804.1	2813544	2813939	R	hypothetical protein	complement(2813544..2813939)	Mycobacterium bovis BCG str. Mexico	11810860
YP_005172023.1	CDS	BCGMEX_2566c	NC_016804.1	2813936	2814181	R	putative DNA-binding protein, CopG family	complement(2813936..2814181)	Mycobacterium bovis BCG str. Mexico	11810861
YP_005172024.1	CDS	BCGMEX_2567c	NC_016804.1	2814592	2815011	R	hypothetical protein	complement(2814592..2815011)	Mycobacterium bovis BCG str. Mexico	11810862
YP_005172025.1	CDS	aroE	NC_016804.1	2815023	2815805	R	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a single base deletion leads to a shorter product compared to Mycobacterium tuberculosis strain H37Rv (260 aa versus 269 aa); shikimate 5-dehydrogenase	complement(2815023..2815805)	Mycobacterium bovis BCG str. Mexico	11810863
YP_005172026.1	CDS	BCGMEX_2569c	NC_016804.1	2815828	2817081	R	hypothetical protein	complement(2815828..2817081)	Mycobacterium bovis BCG str. Mexico	11810864
YP_005172027.1	CDS	BCGMEX_2570c	NC_016804.1	2817074	2817586	R	putative Holliday junction resolvase	complement(2817074..2817586)	Mycobacterium bovis BCG str. Mexico	11810865
YP_005172028.1	CDS	alaS	NC_016804.1	2817587	2820301	R	Differs from Rv2555c by 1aa, N226K in Mycobacterium bovis BCG Pasteur, BCG Tokio and BCG Mexico; alanyl-tRNA synthetase	complement(2817587..2820301)	Mycobacterium bovis BCG str. Mexico	11810866
YP_005172029.1	CDS	BCGMEX_2572c	NC_016804.1	2820392	2820781	R	hypothetical protein	complement(2820392..2820781)	Mycobacterium bovis BCG str. Mexico	11810867
YP_005172030.1	CDS	BCGMEX_2573	NC_016804.1	2820888	2821562	D	hypothetical protein	2820888..2821562	Mycobacterium bovis BCG str. Mexico	11810868
YP_005172031.1	CDS	BCGMEX_2574	NC_016804.1	2821647	2822357	D	hypothetical protein	2821647..2822357	Mycobacterium bovis BCG str. Mexico	11810869
YP_005172032.1	CDS	BCGMEX_2575c	NC_016804.1	2822387	2823745	R	Differs from Rv2559c by 1aa, D317G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2822387..2823745)	Mycobacterium bovis BCG str. Mexico	11810870
YP_005172033.1	CDS	BCGMEX_2576	NC_016804.1	2823891	2824868	D	Differs from Rv2560 by 1aa, L210V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; proline and glycine rich transmembrane protein	2823891..2824868	Mycobacterium bovis BCG str. Mexico	11810871
YP_005172034.1	CDS	BCGMEX_2577	NC_016804.1	2825225	2825962	D	In Mycobacterium tuberculosis strain H37Rv, Rv2561 and Rv2562 exist as 2 genes. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a single base deletion results in a single product which is more similar to Rv2561; hypothetical protein	2825225..2825962	Mycobacterium bovis BCG str. Mexico	11810872
YP_005172035.1	CDS	BCGMEX_2578	NC_016804.1	2826105	2827154	D	putative glutamine-transport transmembrane protein ABC transporter	2826105..2827154	Mycobacterium bovis BCG str. Mexico	11810873
YP_005172036.1	CDS	glnQ	NC_016804.1	2827157	2828149	D	putative glutamine-transport ATP-binding protein ABC transporter	2827157..2828149	Mycobacterium bovis BCG str. Mexico	11810874
YP_005172037.1	CDS	BCGMEX_2580	NC_016804.1	2828426	2830177	D	hypothetical protein	2828426..2830177	Mycobacterium bovis BCG str. Mexico	11810875
YP_005172038.1	CDS	BCGMEX_2581	NC_016804.1	2830188	2831789	D	In Mycobacterium tuberculosis strain H37Rv, Rv2566 exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a 2bp deletion splits Rv2566 into 2 parts. Differs from first part of Rv2566 by 3aa, S10G, S270A, L315V and from Mb2595 by 1aa, L315V in BCG Pasteur, BCG Tokyo and BCG Mexico; Large protein containing transglutaminase-like domain	2830188..2831789	Mycobacterium bovis BCG str. Mexico	11810876
YP_005172039.1	CDS	BCGMEX_2582	NC_016804.1	2831815	2833608	D	In Mycobacterium tuberculosis strain H37Rv, Rv2566 exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a 2bp deletion splits Rv2566 into 2 parts. Differs from Rv2566 by 2aa, P67L, E326G, and from Mb2596 by 1aa, E326G in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2831815..2833608	Mycobacterium bovis BCG str. Mexico	11810877
YP_005172040.1	CDS	BCGMEX_2583	NC_016804.1	2833608	2836262	D	Differs from Rv2567 by 1aa, R645Q in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2833608..2836262	Mycobacterium bovis BCG str. Mexico	11810878
YP_005172041.1	CDS	BCGMEX_2584c	NC_016804.1	2836259	2837284	R	hypothetical protein	complement(2836259..2837284)	Mycobacterium bovis BCG str. Mexico	11810879
YP_005172042.1	CDS	BCGMEX_2585c	NC_016804.1	2837277	2838221	R	hypothetical protein	complement(2837277..2838221)	Mycobacterium bovis BCG str. Mexico	11810880
YP_005172043.1	CDS	BCGMEX_2586	NC_016804.1	2838325	2838714	D	hypothetical protein	2838325..2838714	Mycobacterium bovis BCG str. Mexico	11810881
YP_005172044.1	CDS	BCGMEX_2587c	NC_016804.1	2838706	2839773	R	Differs from Rv2571c and Mb2601c by 1aa, C68R in Mycobacterium bovis BCG Pasteur; putative transmembrane alanine and valine and leucine rich protein	complement(2838706..2839773)	Mycobacterium bovis BCG str. Mexico	11810882
YP_005172045.1	CDS	aspS	NC_016804.1	2839780	2841615	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico and Mycobacterium bovis, a single base deletion omitting a stop codon, leads to a longer protein with a different COOH end compared to its homolog in Mycobacterium tuberculosis strain H37Rv (611 aa versus 596 aa). Differs from Rv2572c by 1aa, V515A in in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; aspartyl-tRNA synthetase	complement(2839780..2841615)	Mycobacterium bovis BCG str. Mexico	11810883
YP_005172046.1	CDS	BCGMEX_2589	NC_016804.1	2841855	2842595	D	2-dehydropantoate 2-reductase	2841855..2842595	Mycobacterium bovis BCG str. Mexico	11810884
YP_005172047.1	CDS	BCGMEX_2590	NC_016804.1	2842618	2843121	D	hypothetical protein	2842618..2843121	Mycobacterium bovis BCG str. Mexico	11810885
YP_005172048.1	CDS	BCGMEX_2591	NC_016804.1	2843151	2844032	D	putative membrane glycine rich protein	2843151..2844032	Mycobacterium bovis BCG str. Mexico	11810886
YP_005172049.1	CDS	BCGMEX_2592c	NC_016804.1	2844038	2844502	R	hypothetical protein	complement(2844038..2844502)	Mycobacterium bovis BCG str. Mexico	11810887
YP_005172050.1	CDS	BCGMEX_2593	NC_016804.1	2844730	2846319	D	In Mycobacterium tuberculosis strain H37Rv, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, Rv2577 exists as a single gene. In Mycobacterium bovis, a frameshift due to a single base transition splits Rv2577 into 2 parts, Mb2607 and Mb2608; hypothetical protein	2844730..2846319	Mycobacterium bovis BCG str. Mexico	11810888
YP_005172051.1	CDS	BCGMEX_2594c	NC_016804.1	2846321	2847343	R	hypothetical protein	complement(2846321..2847343)	Mycobacterium bovis BCG str. Mexico	11810889
YP_005172052.1	CDS	dhaA	NC_016804.1	2847451	2848353	D	Differs from Rv2579 by 1aa, Q293T, and from Mb2610by 1aa, A96T in BCG Pasteur, BCG Tokyo and BCG Mexico; haloalkane dehalogenase	2847451..2848353	Mycobacterium bovis BCG str. Mexico	11810890
YP_005172053.1	CDS	hisS	NC_016804.1	2848633	2849904	R	histidyl-tRNA synthetase	complement(2848633..2849904)	Mycobacterium bovis BCG str. Mexico	11810891
YP_005172054.1	CDS	BCGMEX_2597c	NC_016804.1	2849901	2850575	R	putative glyoxalase II	complement(2849901..2850575)	Mycobacterium bovis BCG str. Mexico	11810892
YP_005172055.1	CDS	BCGMEX_2598	NC_016804.1	2850626	2851552	D	Differs from Rv2582 by 1aa, F66V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; peptidyl-prolyl cis-trans isomerase B	2850626..2851552	Mycobacterium bovis BCG str. Mexico	11810893
YP_005172056.1	CDS	relA	NC_016804.1	2851638	2854010	R	putative GTP pyrophosphokinase	complement(2851638..2854010)	Mycobacterium bovis BCG str. Mexico	11810894
YP_005172057.1	CDS	apt	NC_016804.1	2854041	2854712	R	Differs from Rv2584c by 1aa, E147A in Mycobacterium tuberculosis CCDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Adenine phosphoribosyltransferase	complement(2854041..2854712)	Mycobacterium bovis BCG str. Mexico	11810895
YP_005172058.1	CDS	BCGMEX_2601c	NC_016804.1	2854816	2856489	R	Differs from Rv2585c by 1aa, S462C in Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative lipoprotein	complement(2854816..2856489)	Mycobacterium bovis BCG str. Mexico	11810896
YP_005172059.1	CDS	secF	NC_016804.1	2856495	2857823	R	Differs from Rv2586c by 2aa, T309A, P434T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; protein-export membrane protein	complement(2856495..2857823)	Mycobacterium bovis BCG str. Mexico	11810897
YP_005172060.1	CDS	secD	NC_016804.1	2857827	2859548	R	Differs from Mb2618c by 1aa, N493S in Mycobacterium tuberculosis H37Rv, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; protein-export membrane protein SecD	complement(2857827..2859548)	Mycobacterium bovis BCG str. Mexico	11810898
YP_005172061.1	CDS	yajC	NC_016804.1	2859658	2860005	R	preprotein translocase subunit	complement(2859658..2860005)	Mycobacterium bovis BCG str. Mexico	11810899
YP_005172062.1	CDS	gabT	NC_016804.1	2860172	2861521	D	4-aminobutyrate aminotransferase	2860172..2861521	Mycobacterium bovis BCG str. Mexico	11810900
YP_005172063.1	CDS	fadD9	NC_016804.1	2861683	2865189	D	Differs from Rv2590 by 1aa, Y309F, and from Mb2621 by 1aa, A1106T in BCG Pasteur, BCG Tokyo and BCG Mexico; long-chain-fatty-acid--CoA ligase	2861683..2865189	Mycobacterium bovis BCG str. Mexico	11810901
YP_005172064.1	CDS	PE_PGRS44	NC_016804.1	2865363	2867003	D	Differs from Rv2591 by extra 3 aa resulting from same 9 bp in-frame insertion as in Mycobacterium bovis and by 2aa S415G, D463G in BCG Pasteur, BCG Tokyo and BCG Mexico; PE-PGRS family protein	2865363..2867003	Mycobacterium bovis BCG str. Mexico	11810902
YP_005172065.1	CDS	ruvB	NC_016804.1	2867020	2868054	R	holliday junction DNA helicase B	complement(2867020..2868054)	Mycobacterium bovis BCG str. Mexico	11810903
YP_005172066.1	CDS	ruvA	NC_016804.1	2868051	2868641	R	holliday junction DNA helicase motor protein	complement(2868051..2868641)	Mycobacterium bovis BCG str. Mexico	11810904
YP_005172067.1	CDS	ruvC	NC_016804.1	2868638	2869204	R	Crossover junction endodeoxyribonuclease ruvC	complement(2868638..2869204)	Mycobacterium bovis BCG str. Mexico	11810905
YP_005172068.1	CDS	BCGMEX_2611	NC_016804.1	2869313	2869558	D	hypothetical protein	2869313..2869558	Mycobacterium bovis BCG str. Mexico	11810906
YP_005172069.1	CDS	BCGMEX_2612	NC_016804.1	2869555	2869959	D	Differs from Rv2596 by 1aa, R77C in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2869555..2869959	Mycobacterium bovis BCG str. Mexico	11810907
YP_005172070.1	CDS	BCGMEX_2613	NC_016804.1	2870176	2870796	D	hypothetical protein	2870176..2870796	Mycobacterium bovis BCG str. Mexico	11810908
YP_005172071.1	CDS	BCGMEX_2614	NC_016804.1	2870807	2871301	D	hypothetical protein	2870807..2871301	Mycobacterium bovis BCG str. Mexico	11810909
YP_005172072.1	CDS	BCGMEX_2615	NC_016804.1	2871298	2871729	D	Differs from Rv2599 by 1aa, I12S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2871298..2871729	Mycobacterium bovis BCG str. Mexico	11810910
YP_005172073.1	CDS	BCGMEX_2616	NC_016804.1	2871811	2872017	D	First 64 aa similar to N-terminal part of Rv2600 and Mb2631 but then frameshifts due to 10bp deletion. Results in BCG Pasteur, BCG Tokyo and BCG Mexico orthologs of Mb2631 and Rv2600 being in two parts; putative integral membrane protein	2871811..2872017	Mycobacterium bovis BCG str. Mexico	11810911
YP_005172074.1	CDS	BCGMEX_2617	NC_016804.1	2872023	2872202	D	All 59aa are similar to C-terminal part of Rv2600 and Mb2631 owing to frameshifts due to 10bp deletion. Results in BCG Pasteur, BCG Tokyo and BCG Mexico orthologs of Mb2631 and Rv2600 being in two parts, both of which encode hydrophobic proteins; putative integral membrane protein	2872023..2872202	Mycobacterium bovis BCG str. Mexico	11810912
YP_005172075.1	CDS	speE	NC_016804.1	2872199	2873770	D	spermidine synthase	2872199..2873770	Mycobacterium bovis BCG str. Mexico	11810913
YP_005172076.1	CDS	BCGMEX_2619	NC_016804.1	2873881	2874168	D	hypothetical protein	2873881..2874168	Mycobacterium bovis BCG str. Mexico	11810914
YP_005172077.1	CDS	BCGMEX_2620	NC_016804.1	2874155	2874595	D	hypothetical protein	2874155..2874595	Mycobacterium bovis BCG str. Mexico	11810915
YP_005172078.1	CDS	BCGMEX_2621c	NC_016804.1	2874616	2875371	R	hypothetical protein	complement(2874616..2875371)	Mycobacterium bovis BCG str. Mexico	11810916
YP_005172079.1	CDS	pdxT	NC_016804.1	2875504	2876100	R	glutamine amidotransferase subunit pdxT	complement(2875504..2876100)	Mycobacterium bovis BCG str. Mexico	11810917
YP_005172080.1	CDS	tesB2	NC_016804.1	2876108	2876953	R	Differs from Rv2605c by 1aa, L85F in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative acyl-CoA thioesterase II	complement(2876108..2876953)	Mycobacterium bovis BCG str. Mexico	11810918
YP_005172081.1	CDS	pdxS	NC_016804.1	2876982	2877881	R	pyridoxal biosynthesis lyase pdxS	complement(2876982..2877881)	Mycobacterium bovis BCG str. Mexico	11810919
YP_005172082.1	CDS	pdxH	NC_016804.1	2878009	2878683	D	Pyridoxamine 5'-phosphate oxidase	2878009..2878683	Mycobacterium bovis BCG str. Mexico	11810920
YP_005172083.1	CDS	PPE42	NC_016804.1	2878857	2880599	D	Differs from Rv2608 by 1aa, S281P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; PPE family protein	2878857..2880599	Mycobacterium bovis BCG str. Mexico	11810921
YP_005172084.1	CDS	BCGMEX_2627c	NC_016804.1	2880621	2881676	R	membrane protein	complement(2880621..2881676)	Mycobacterium bovis BCG str. Mexico	11810922
YP_005172085.1	CDS	pimA	NC_016804.1	2881676	2882812	R	alpha-mannosyltransferase	complement(2881676..2882812)	Mycobacterium bovis BCG str. Mexico	11810923
YP_005172086.1	CDS	BCGMEX_2629c	NC_016804.1	2882823	2883773	R	Differs from Rv2611c by 2aa, M102I, C197S in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Lipid A biosynthesis lauroyl acyltransferase	complement(2882823..2883773)	Mycobacterium bovis BCG str. Mexico	11810924
YP_005172087.1	CDS	pgsA1	NC_016804.1	2883770	2884423	R	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	complement(2883770..2884423)	Mycobacterium bovis BCG str. Mexico	11810925
YP_005172088.1	CDS	BCGMEX_2631c	NC_016804.1	2884420	2885007	R	hypothetical protein	complement(2884420..2885007)	Mycobacterium bovis BCG str. Mexico	11810926
YP_005172089.1	CDS	thrS	NC_016804.1	2885000	2887078	R	Threonyl-tRNA synthetase	complement(2885000..2887078)	Mycobacterium bovis BCG str. Mexico	11810927
YP_005172090.1	CDS	PE_PGRS45b	NC_016804.1	2887411	2888580	R	In Mycobacterium bovis, a 9 bp in-frame insertion leads to a slightly longer product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (464 aa versus 461 aa). In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 7bp deletion splits PE_PGRS45 in two parts; PE-PGRS family protein	complement(2887411..2888580)	Mycobacterium bovis BCG str. Mexico	11810928
YP_005172091.1	CDS	PE_PGRS45a	NC_016804.1	2888568	2888798	R	In Mycobacterium bovis, a 9 bp in-frame insertion leads to a slightly longer product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (464 aa versus 461 aa). In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 7bp deletion splits PE_PGRS45 in two parts. Differs from Rv2615c by 1aa, V40A in BCG Pasteur, BCG Tokyo and BCG Mexico; PE-PGRS family protein	complement(2888568..2888798)	Mycobacterium bovis BCG str. Mexico	11810929
YP_005172092.1	CDS	BCGMEX_2635	NC_016804.1	2889143	2889643	D	Differs from Rv2616 by 1aa, I72V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2889143..2889643	Mycobacterium bovis BCG str. Mexico	11810930
YP_005172093.1	CDS	BCGMEX_2636c	NC_016804.1	2889660	2890100	R	putative transmembrane protein	complement(2889660..2890100)	Mycobacterium bovis BCG str. Mexico	11810931
YP_005172094.1	CDS	BCGMEX_2637	NC_016804.1	2890247	2890924	D	hypothetical protein	2890247..2890924	Mycobacterium bovis BCG str. Mexico	11810932
YP_005172095.1	CDS	BCGMEX_2638c	NC_016804.1	2890909	2891262	R	hypothetical protein	complement(2890909..2891262)	Mycobacterium bovis BCG str. Mexico	11810933
YP_005172096.1	CDS	BCGMEX_2639c	NC_016804.1	2891275	2891700	R	putative transmembrane protein	complement(2891275..2891700)	Mycobacterium bovis BCG str. Mexico	11810934
YP_005172097.1	CDS	BCGMEX_2640c	NC_016804.1	2891697	2892368	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a 3 bp deletion leads to a slightly shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (223 aa versus 224 aa) due to deletion of 1aa after position 194; putative transcriptional regulatory protein	complement(2891697..2892368)	Mycobacterium bovis BCG str. Mexico	11810935
YP_005172098.1	CDS	BCGMEX_2641	NC_016804.1	2892446	2893267	D	putative methyltransferase	2892446..2893267	Mycobacterium bovis BCG str. Mexico	11810936
YP_005172099.1	CDS	BCGMEX_2642	NC_016804.1	2893403	2894296	D	Universal stress protein family	2893403..2894296	Mycobacterium bovis BCG str. Mexico	11810937
YP_005172100.1	CDS	BCGMEX_2643c	NC_016804.1	2894299	2895117	R	Universal stress protein family	complement(2894299..2895117)	Mycobacterium bovis BCG str. Mexico	11810938
YP_005172101.1	CDS	BCGMEX_2644c	NC_016804.1	2895132	2896313	R	putative transmembrane alanine and leucine rich protein	complement(2895132..2896313)	Mycobacterium bovis BCG str. Mexico	11810939
YP_005172102.1	CDS	BCGMEX_2645c	NC_016804.1	2896372	2896803	R	hypoxic response protein 1	complement(2896372..2896803)	Mycobacterium bovis BCG str. Mexico	11810940
YP_005172103.1	CDS	BCGMEX_2646c	NC_016804.1	2897317	2898558	R	Differs from Rv2627c by 1aa, G104R in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2897317..2898558)	Mycobacterium bovis BCG str. Mexico	11810941
YP_005172104.1	CDS	BCGMEX_2647	NC_016804.1	2898868	2899230	D	Differs from Rv2628 by 1aa, L59S, and from Mb2661 by 1aa, P68R in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2898868..2899230	Mycobacterium bovis BCG str. Mexico	11810942
YP_005172105.1	CDS	BCGMEX_2648	NC_016804.1	2899577	2900701	D	hypothetical protein	2899577..2900701	Mycobacterium bovis BCG str. Mexico	11810943
YP_005172106.1	CDS	BCGMEX_2649	NC_016804.1	2900703	2901242	D	hypothetical protein	2900703..2901242	Mycobacterium bovis BCG str. Mexico	11810944
YP_005172107.1	CDS	BCGMEX_2650	NC_016804.1	2901381	2902679	D	hypothetical protein	2901381..2902679	Mycobacterium bovis BCG str. Mexico	11810945
YP_005172108.1	CDS	BCGMEX_2651c	NC_016804.1	2902718	2902999	R	hypothetical protein	complement(2902718..2902999)	Mycobacterium bovis BCG str. Mexico	11810946
YP_005172109.1	CDS	BCGMEX_2652c	NC_016804.1	2903144	2903629	R	hypothetical protein	complement(2903144..2903629)	Mycobacterium bovis BCG str. Mexico	11810947
YP_005172110.1	CDS	BCGMEX_2653c	NC_016804.1	2903656	2903910	R	hypothetical protein	complement(2903656..2903910)	Mycobacterium bovis BCG str. Mexico	11810948
YP_005172111.1	CDS	PE_PGRS46	NC_016804.1	2903914	2906316	R	In Mycobacterium bovis BCG Pasteur,BCG Tokio and BCG Mexico an in-frame insertion of 66 bp, leads to a longer product compared to Mycobacterium bovis and Mycobacterium tuberculosis strain H37Rv (800 aa versus 778 aa); PE-PGRS family protein	complement(2903914..2906316)	Mycobacterium bovis BCG str. Mexico	11810949
YP_005172112.1	CDS	BCGMEX_2655	NC_016804.1	2906345	2906587	D	hypothetical protein	2906345..2906587	Mycobacterium bovis BCG str. Mexico	11810950
YP_005172113.1	CDS	BCGMEX_2656	NC_016804.1	2906588	2907265	D	putative O-phosphotransferase	2906588..2907265	Mycobacterium bovis BCG str. Mexico	11810951
YP_005172114.1	CDS	dedA	NC_016804.1	2907461	2908117	D	putative transmembrane protein	2907461..2908117	Mycobacterium bovis BCG str. Mexico	11810952
YP_005172115.1	CDS	BCGMEX_2658	NC_016804.1	2908280	2908726	D	anti-sigma factor antagonist	2908280..2908726	Mycobacterium bovis BCG str. Mexico	11810953
YP_005172116.1	CDS	BCGMEX_2659c	NC_016804.1	2908901	2909233	R	hypothetical protein	complement(2908901..2909233)	Mycobacterium bovis BCG str. Mexico	11810954
YP_005172117.1	CDS	BCGMEX_2660c	NC_016804.1	2909353	2909712	R	ArsR family transcriptional regulator	complement(2909353..2909712)	Mycobacterium bovis BCG str. Mexico	11810955
YP_005172118.1	CDS	cadI	NC_016804.1	2909814	2910272	D	cadmium-induced protein	2909814..2910272	Mycobacterium bovis BCG str. Mexico	11810956
YP_005172119.1	CDS	BCGMEX_2662	NC_016804.1	2910408	2910788	D	putative transcriptional regulatory protein,ArsR-family	2910408..2910788	Mycobacterium bovis BCG str. Mexico	11810957
YP_005172120.1	CDS	arsC	NC_016804.1	2910785	2912281	D	Differs from Rv2643 by 1 aa A455V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative arsenic-transport integral membrane protein	2910785..2912281	Mycobacterium bovis BCG str. Mexico	11810958
YP_005172121.1	CDS	BCGMEX_2664c	NC_016804.1	2912408	2912725	R	hypothetical protein	complement(2912408..2912725)	Mycobacterium bovis BCG str. Mexico	11810959
YP_005172122.1	CDS	BCGMEX_2665c	NC_016804.1	2913862	2914083	R	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a large 10982 bp deletion (RD11 region) leads to deletion of genes between Rv2645 and Rv2659c compared to Mycobacterium tuberculosis strain H37Rv; hypothetical protein	complement(2913862..2914083)	Mycobacterium bovis BCG str. Mexico	11810964
YP_005172123.1	CDS	BCGMEX_2666c	NC_016804.1	2914080	2914469	R	hypothetical protein	complement(2914080..2914469)	Mycobacterium bovis BCG str. Mexico	11810965
YP_005172124.1	CDS	BCGMEX_2667	NC_016804.1	2914375	2914647	D	hypothetical protein	2914375..2914647	Mycobacterium bovis BCG str. Mexico	11810966
YP_005172125.1	CDS	BCGMEX_2668	NC_016804.1	2914746	2914979	D	hypothetical protein	2914746..2914979	Mycobacterium bovis BCG str. Mexico	11810967
YP_005172126.1	CDS	BCGMEX_2669	NC_016804.1	2914990	2915244	D	hypothetical protein	2914990..2915244	Mycobacterium bovis BCG str. Mexico	11810968
YP_005172127.1	CDS	BCGMEX_2670c	NC_016804.1	2915473	2915964	R	hypothetical protein	complement(2915473..2915964)	Mycobacterium bovis BCG str. Mexico	11810969
YP_005172128.1	CDS	BCGMEX_2671	NC_016804.1	2915592	2915873	D	putative arginine rich protein	2915592..2915873	Mycobacterium bovis BCG str. Mexico	11810970
YP_005172129.1	CDS	BCGMEX_2672	NC_016804.1	2915964	2916767	D	putative transposase for insertion sequence element IS1081	2915964..2916767	Mycobacterium bovis BCG str. Mexico	11810971
YP_005172130.1	CDS	clpX'	NC_016804.1	2916789	2917547	D	putative ATP-dependent protease ATP-binding subunit	2916789..2917547	Mycobacterium bovis BCG str. Mexico	11810972
YP_005172131.1	CDS	BCGMEX_2674	NC_016804.1	2917626	2918147	D	Differs from Rv2668 by 2aa R3H and K162E in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative exported alanine and valine rich protein	2917626..2918147	Mycobacterium bovis BCG str. Mexico	11810973
YP_005172132.1	CDS	BCGMEX_2675	NC_016804.1	2918176	2918646	D	hypothetical protein	2918176..2918646	Mycobacterium bovis BCG str. Mexico	11810974
YP_005172133.1	CDS	BCGMEX_2676c	NC_016804.1	2918624	2919733	R	hypothetical protein	complement(2918624..2919733)	Mycobacterium bovis BCG str. Mexico	11810975
YP_005172134.1	CDS	ribD	NC_016804.1	2919732	2920508	D	putative bifunctional enzyme riboflavin biosynthesis protein ribD: diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil reductase	2919732..2920508	Mycobacterium bovis BCG str. Mexico	11810976
YP_005172135.1	CDS	BCGMEX_2678	NC_016804.1	2920575	2922161	D	Differs from Rv2672 by 1aa D317H in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative secreted protease	2920575..2922161	Mycobacterium bovis BCG str. Mexico	11810977
YP_005172136.1	CDS	BCGMEX_2679	NC_016804.1	2922184	2923485	D	putative transmembrane protein	2922184..2923485	Mycobacterium bovis BCG str. Mexico	11810978
YP_005172137.1	CDS	BCGMEX_2680	NC_016804.1	2923654	2924064	D	hypothetical protein	2923654..2924064	Mycobacterium bovis BCG str. Mexico	11810979
YP_005172138.1	CDS	BCGMEX_2681c	NC_016804.1	2924132	2924884	R	hypothetical protein	complement(2924132..2924884)	Mycobacterium bovis BCG str. Mexico	11810980
YP_005172139.1	CDS	BCGMEX_2682c	NC_016804.1	2924881	2925576	R	hypothetical protein	complement(2924881..2925576)	Mycobacterium bovis BCG str. Mexico	11810981
YP_005172140.1	CDS	hemY	NC_016804.1	2925582	2926940	R	protoporphyrinogen IX oxidase	complement(2925582..2926940)	Mycobacterium bovis BCG str. Mexico	11810982
YP_005172141.1	CDS	hemE	NC_016804.1	2926937	2928010	R	Differs from Mb2697c by 1aa A269G in Mycobacterium tuberculosis H37Rv, BCG Pasteur, BCG Tokyo and BCG Mexico; Uroporphyrinogen III decarboxylase	complement(2926937..2928010)	Mycobacterium bovis BCG str. Mexico	11810983
YP_005172142.1	CDS	BCGMEX_2685	NC_016804.1	2928063	2928893	D	Enoyl-CoA hydratase	2928063..2928893	Mycobacterium bovis BCG str. Mexico	11810984
YP_005172143.1	CDS	BCGMEX_2686	NC_016804.1	2929155	2929787	D	hypothetical protein	2929155..2929787	Mycobacterium bovis BCG str. Mexico	11810985
YP_005172144.1	CDS	BCGMEX_2687	NC_016804.1	2929789	2931105	D	Differs from Rv2681 by 1aa V196A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2929789..2931105	Mycobacterium bovis BCG str. Mexico	11810986
YP_005172145.1	CDS	dxs1	NC_016804.1	2931102	2933018	R	1-deoxy-D-xylulose-5-phosphate synthase	complement(2931102..2933018)	Mycobacterium bovis BCG str. Mexico	11810987
YP_005172146.1	CDS	BCGMEX_2689	NC_016804.1	2933162	2933659	D	Differs from Rv2683 by 1aa, S84L in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2933162..2933659	Mycobacterium bovis BCG str. Mexico	11810988
YP_005172147.1	CDS	arsA	NC_016804.1	2933664	2934953	D	putative arsenic-transport integral membrane protein	2933664..2934953	Mycobacterium bovis BCG str. Mexico	11810989
YP_005172148.1	CDS	arsB1	NC_016804.1	2935033	2936319	D	Differs from Rv2685 by 1aa, G378A and Mb2704, by 1aa, G393C in BCG Pasteur, BCG Tokyo and BCG Mexico; putative arsenic-transport integral membrane protein	2935033..2936319	Mycobacterium bovis BCG str. Mexico	11810990
YP_005172149.1	CDS	BCGMEX_2692c	NC_016804.1	2936330	2937088	R	putative antibiotic-transport integral membrane leucine and alanine and valine rich protein ABC transporter	complement(2936330..2937088)	Mycobacterium bovis BCG str. Mexico	11810991
YP_005172150.1	CDS	BCGMEX_2693c	NC_016804.1	2937085	2937798	R	putative antibiotic-transport integral membrane leucine and valine rich protein ABC transporter	complement(2937085..2937798)	Mycobacterium bovis BCG str. Mexico	11810992
YP_005172151.1	CDS	BCGMEX_2694c	NC_016804.1	2937795	2938700	R	Differs from Rv2688c by 1aa, T156P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative antibiotic-transport ATP-binding protein ABC transporter	complement(2937795..2938700)	Mycobacterium bovis BCG str. Mexico	11810993
YP_005172152.1	CDS	BCGMEX_2695c	NC_016804.1	2938895	2940112	R	hypothetical protein	complement(2938895..2940112)	Mycobacterium bovis BCG str. Mexico	11810994
YP_005172153.1	CDS	BCGMEX_2696c	NC_016804.1	2940268	2942259	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a single base transition leads to a slightly longer product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (663 aa versus 657aa); putative integral membrane alanine and valine and leucine rich protein	complement(2940268..2942259)	Mycobacterium bovis BCG str. Mexico	11810995
YP_005172154.1	CDS	ceoB	NC_016804.1	2942394	2943077	D	Differs from Rv2691 by 1aa, A117T in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Trk system potassium uptake protein	2942394..2943077	Mycobacterium bovis BCG str. Mexico	11810996
YP_005172155.1	CDS	ceoC	NC_016804.1	2943074	2943736	D	Differs from Rv2692 by 1aa, V133I in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Trk system potassium uptake protein	2943074..2943736	Mycobacterium bovis BCG str. Mexico	11810997
YP_005172156.1	CDS	BCGMEX_2699c	NC_016804.1	2943747	2944418	R	putative integral membrane alanine and leucine rich protein	complement(2943747..2944418)	Mycobacterium bovis BCG str. Mexico	11810998
YP_005172157.1	CDS	BCGMEX_2700c	NC_016804.1	2944449	2944817	R	Differs from Rv2694c by 1aa, S68R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2944449..2944817)	Mycobacterium bovis BCG str. Mexico	11810999
YP_005172158.1	CDS	BCGMEX_2701	NC_016804.1	2944966	2945673	D	hypothetical protein	2944966..2945673	Mycobacterium bovis BCG str. Mexico	11811000
YP_005172159.1	CDS	BCGMEX_2702c	NC_016804.1	2945879	2946658	R	Differs from Rv2696c by 1aa, N164D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2945879..2946658)	Mycobacterium bovis BCG str. Mexico	11811001
YP_005172160.1	CDS	dut	NC_016804.1	2946733	2947197	R	deoxyuridine 5'-triphosphate nucleotidohydrolase	complement(2946733..2947197)	Mycobacterium bovis BCG str. Mexico	11811002
YP_005172161.1	CDS	BCGMEX_2704	NC_016804.1	2947223	2947708	D	transmembrane protein	2947223..2947708	Mycobacterium bovis BCG str. Mexico	11811003
YP_005172162.1	CDS	BCGMEX_2705c	NC_016804.1	2947713	2948015	R	hypothetical protein	complement(2947713..2948015)	Mycobacterium bovis BCG str. Mexico	11811004
YP_005172163.1	CDS	BCGMEX_2706	NC_016804.1	2948253	2948903	D	hypothetical protein	2948253..2948903	Mycobacterium bovis BCG str. Mexico	11811005
YP_005172164.1	CDS	suhB	NC_016804.1	2948913	2949785	R	inositol-1-monophosphatase	complement(2948913..2949785)	Mycobacterium bovis BCG str. Mexico	11811006
YP_005172165.1	CDS	ppgK	NC_016804.1	2949908	2950705	D	Differs from Rv2702 by 1aa, T203I in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; polyphosphate glucokinase	2949908..2950705	Mycobacterium bovis BCG str. Mexico	11811007
YP_005172166.1	CDS	sigA	NC_016804.1	2950885	2952471	D	RNA polymerase sigma factor	2950885..2952471	Mycobacterium bovis BCG str. Mexico	11811008
YP_005172167.1	CDS	BCGMEX_2710	NC_016804.1	2952508	2952936	D	hypothetical protein	2952508..2952936	Mycobacterium bovis BCG str. Mexico	11811009
YP_005172168.1	CDS	BCGMEX_2711c	NC_016804.1	2952864	2953253	R	hypothetical protein	complement(2952864..2953253)	Mycobacterium bovis BCG str. Mexico	11811010
YP_005172169.1	CDS	BCGMEX_2712c	NC_016804.1	2953250	2953507	R	hypothetical protein	complement(2953250..2953507)	Mycobacterium bovis BCG str. Mexico	11811011
YP_005172170.1	CDS	BCGMEX_2713	NC_016804.1	2953623	2954597	D	putative transmembrane alanine and leucine rich protein	2953623..2954597	Mycobacterium bovis BCG str. Mexico	11811012
YP_005172171.1	CDS	BCGMEX_2714c	NC_016804.1	2954598	2954846	R	hypothetical protein	complement(2954598..2954846)	Mycobacterium bovis BCG str. Mexico	11811013
YP_005172172.1	CDS	BCGMEX_2715	NC_016804.1	2954889	2955335	D	Differs from Rv2709 by 1aa, S35T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	2954889..2955335	Mycobacterium bovis BCG str. Mexico	11811014
YP_005172173.1	CDS	sigB	NC_016804.1	2955511	2956482	D	RNA polymerase sigma factor	2955511..2956482	Mycobacterium bovis BCG str. Mexico	11811015
YP_005172174.1	CDS	ideR	NC_016804.1	2956615	2957307	D	iron-dependent repressor and activator	2956615..2957307	Mycobacterium bovis BCG str. Mexico	11811016
YP_005172175.1	CDS	BCGMEX_2718c	NC_016804.1	2957320	2958378	R	hypothetical protein	complement(2957320..2958378)	Mycobacterium bovis BCG str. Mexico	11811017
YP_005172176.1	CDS	sthA	NC_016804.1	2958491	2959897	D	pyridine nucleotide transhydrogenase	2958491..2959897	Mycobacterium bovis BCG str. Mexico	11811018
YP_005172177.1	CDS	BCGMEX_2720	NC_016804.1	2960115	2961089	D	Differs from Rv2714 by 2aa, W181S, A245V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	2960115..2961089	Mycobacterium bovis BCG str. Mexico	11811019
YP_005172178.1	CDS	BCGMEX_2721	NC_016804.1	2961148	2962173	D	putative hydrolase	2961148..2962173	Mycobacterium bovis BCG str. Mexico	11811020
YP_005172179.1	CDS	BCGMEX_2722	NC_016804.1	2962222	2962908	D	hypothetical protein	2962222..2962908	Mycobacterium bovis BCG str. Mexico	11811021
YP_005172180.1	CDS	BCGMEX_2723c	NC_016804.1	2962917	2963411	R	hypothetical protein	complement(2962917..2963411)	Mycobacterium bovis BCG str. Mexico	11811022
YP_005172181.1	CDS	nrdR	NC_016804.1	2963463	2963927	R	NrdR family transcriptional regulator	complement(2963463..2963927)	Mycobacterium bovis BCG str. Mexico	11811023
YP_005172182.1	CDS	BCGMEX_2725c	NC_016804.1	2964090	2964587	R	Differs from Rv2719c by 1aa, H124Y in Mycobacteium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; membrane protein	complement(2964090..2964587)	Mycobacterium bovis BCG str. Mexico	11811024
YP_005172183.1	CDS	lexA	NC_016804.1	2964895	2965548	D	Differs from Rv2720 by 1aa, A98V by Mycobacterium bovis BCG Pasteur, BCG Tokio and BCG Mexico; LexA repressor	2964895..2965548	Mycobacterium bovis BCG str. Mexico	11811025
YP_005172184.1	CDS	BCGMEX_2727c	NC_016804.1	2965570	2967669	R	Differs from Rv2721c and Mb2740c by 2aa, S251G, A326T in BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane alanine and glycine rich protein	complement(2965570..2967669)	Mycobacterium bovis BCG str. Mexico	11811026
YP_005172185.1	CDS	BCGMEX_2728	NC_016804.1	2967685	2967933	D	hypothetical protein	2967685..2967933	Mycobacterium bovis BCG str. Mexico	11811027
YP_005172186.1	CDS	BCGMEX_2729	NC_016804.1	2967959	2969152	D	putative integral membrane protein	2967959..2969152	Mycobacterium bovis BCG str. Mexico	11811028
YP_005172187.1	CDS	fadE20	NC_016804.1	2969181	2970341	R	Differs from Rv2724c by 1aa, T127I, and from Mb2743c by 1aa, P33A in BCG Pasteur, BCG Tokyo and BCG Mexico; putative acyl-CoA dehydrogenase	complement(2969181..2970341)	Mycobacterium bovis BCG str. Mexico	11811029
YP_005172188.1	CDS	hflX	NC_016804.1	2970477	2971964	R	Differs from Rv2725c and Mb2744c by 1aa, D218G in BCG Pasteur, BCG Tokyo and BCG Mexico; putative GTP-binding protein	complement(2970477..2971964)	Mycobacterium bovis BCG str. Mexico	11811030
YP_005172189.1	CDS	dapF	NC_016804.1	2971981	2972850	R	diaminopimelate epimerase	complement(2971981..2972850)	Mycobacterium bovis BCG str. Mexico	11811031
YP_005172190.1	CDS	miaA	NC_016804.1	2972875	2973819	R	tRNA delta(2)-isopentenylpyrophosphate transferase	complement(2972875..2973819)	Mycobacterium bovis BCG str. Mexico	11811032
YP_005172191.1	CDS	BCGMEX_2734c	NC_016804.1	2973816	2974511	R	hypothetical protein	complement(2973816..2974511)	Mycobacterium bovis BCG str. Mexico	11811033
YP_005172192.1	CDS	BCGMEX_2735c	NC_016804.1	2974620	2975525	R	Differs from Rv2729c by 3aa, L41F, E202A, V266A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative integral membrane alanine and valine and leucine rich protein	complement(2974620..2975525)	Mycobacterium bovis BCG str. Mexico	11811034
YP_005172193.1	CDS	BCGMEX_2736	NC_016804.1	2975592	2976068	D	hypothetical protein	2975592..2976068	Mycobacterium bovis BCG str. Mexico	11811035
YP_005172194.1	CDS	BCGMEX_2737	NC_016804.1	2976076	2977428	D	hypothetical protein	2976076..2977428	Mycobacterium bovis BCG str. Mexico	11811036
YP_005172195.1	CDS	BCGMEX_2738c	NC_016804.1	2977425	2978039	R	putative transmembrane protein	complement(2977425..2978039)	Mycobacterium bovis BCG str. Mexico	11811037
YP_005172196.1	CDS	miaB	NC_016804.1	2978036	2979574	R	dimethylallyl adenosine tRNA methylthiotransferase	complement(2978036..2979574)	Mycobacterium bovis BCG str. Mexico	11811038
YP_005172197.1	CDS	BCGMEX_2740	NC_016804.1	2979871	2980725	D	hypothetical protein	2979871..2980725	Mycobacterium bovis BCG str. Mexico	11811039
YP_005172198.1	CDS	BCGMEX_2741c	NC_016804.1	2980610	2981602	R	hypothetical protein	complement(2980610..2981602)	Mycobacterium bovis BCG str. Mexico	11811040
YP_005172199.1	CDS	recX	NC_016804.1	2981612	2982136	R	Regulatory protein	complement(2981612..2982136)	Mycobacterium bovis BCG str. Mexico	11811041
YP_005172200.1	CDS	recA	NC_016804.1	2982102	2984474	R	protein recA	complement(2982102..2984474)	Mycobacterium bovis BCG str. Mexico	11811042
YP_005172201.1	CDS	BCGMEX_2744	NC_016804.1	2984669	2984842	D	putative cysteine rich protein	2984669..2984842	Mycobacterium bovis BCG str. Mexico	11811043
YP_005172202.1	CDS	BCGMEX_2745c	NC_016804.1	2984856	2985062	R	hypothetical protein	complement(2984856..2985062)	Mycobacterium bovis BCG str. Mexico	11811044
YP_005172203.1	CDS	BCGMEX_2746c	NC_016804.1	2985073	2986239	R	transferase	complement(2985073..2986239)	Mycobacterium bovis BCG str. Mexico	11811045
YP_005172204.1	CDS	ephG	NC_016804.1	2986283	2986732	D	Epoxide hydrolase	2986283..2986732	Mycobacterium bovis BCG str. Mexico	11811046
YP_005172205.1	CDS	PE_PGRS47a	NC_016804.1	2986964	2986996	D	In Mycobacterium bovis BCG Pasteur, BCG Tokyo,BCG Mexico and Mycobacterium bovis, deletions of a single base leads to frameshifted products PE_PGRS47a (10 aa) and PE_PGRS47b (424 aa), respectively; PE-PGRS family protein	2986964..2986996	Mycobacterium bovis BCG str. Mexico	11811047
YP_005172206.1	CDS	PE_PGRS47	NC_016804.1	2987008	2988282	D	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, deletions of a single base and of 84 bp leads to a shorter product with a different 5' start compared to its homolog in Mycobacterium tuberculosis strain H37Rv. Also has lost 174 bp compared to Mb2761; PE PGRS family protein	2987008..2988282	Mycobacterium bovis BCG str. Mexico	11811048
YP_005172207.1	CDS	BCGMEX_2750c	NC_016804.1	2988306	2988554	R	In Mycobacterium tuberculosis strain H37Rv, Rv2742c exists as a single gene. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a frameshift due to a 23bp insertion splits Rv2742c into two parts; putative arginine rich protein	complement(2988306..2988554)	Mycobacterium bovis BCG str. Mexico	11811049
YP_005172208.1	CDS	BCGMEX_2751c	NC_016804.1	2988575	2989162	R	In Mycobacterium tuberculosis strain H37Rv, Rv2742c exists as a single gene. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a frameshift due to a 23bp insertion splits Rv2742c into two parts; putative arginine rich protein	complement(2988575..2989162)	Mycobacterium bovis BCG str. Mexico	11811050
YP_005172209.1	CDS	BCGMEX_2752c	NC_016804.1	2989234	2990046	R	putative membrane alanine rich protein	complement(2989234..2990046)	Mycobacterium bovis BCG str. Mexico	11811051
YP_005172210.1	CDS	BCGMEX_2753c	NC_016804.1	2990065	2990877	R	Differs from Mb2765c by 1aa, K153Q in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(2990065..2990877)	Mycobacterium bovis BCG str. Mexico	11811052
YP_005172211.1	CDS	BCGMEX_2754c	NC_016804.1	2991007	2991345	R	putative transcriptional regulatory protein	complement(2991007..2991345)	Mycobacterium bovis BCG str. Mexico	11811053
YP_005172212.1	CDS	pgsA3	NC_016804.1	2991416	2992045	R	putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	complement(2991416..2992045)	Mycobacterium bovis BCG str. Mexico	11811054
YP_005172213.1	CDS	BCGMEX_2756	NC_016804.1	2992076	2992600	D	acetyltransferase	2992076..2992600	Mycobacterium bovis BCG str. Mexico	11811055
YP_005172214.1	CDS	ftsK	NC_016804.1	2992669	2995320	R	putative cell division transmembrane protein	complement(2992669..2995320)	Mycobacterium bovis BCG str. Mexico	11811056
YP_005172215.1	CDS	BCGMEX_2758	NC_016804.1	2995319	2995633	D	hypothetical protein	2995319..2995633	Mycobacterium bovis BCG str. Mexico	11811057
YP_005172216.1	CDS	BCGMEX_2759	NC_016804.1	2995630	2996448	D	putative dehydrogenase	2995630..2996448	Mycobacterium bovis BCG str. Mexico	11811058
YP_005172217.1	CDS	BCGMEX_2760	NC_016804.1	2996452	2997342	D	hypothetical protein	2996452..2997342	Mycobacterium bovis BCG str. Mexico	11811059
YP_005172218.1	CDS	BCGMEX_2761c	NC_016804.1	2997329	2999005	R	hypothetical protein	complement(2997329..2999005)	Mycobacterium bovis BCG str. Mexico	11811060
YP_005172219.1	CDS	dapA	NC_016804.1	2999036	2999938	R	dihydrodipicolinate synthase	complement(2999036..2999938)	Mycobacterium bovis BCG str. Mexico	11811061
YP_005172220.1	CDS	thyX	NC_016804.1	3000007	3000759	R	Thymidylate synthase	complement(3000007..3000759)	Mycobacterium bovis BCG str. Mexico	11811062
YP_005172221.1	CDS	hsdS'	NC_016804.1	3001003	3001278	R	putative type I restriction-modification system specificity determinant	complement(3001003..3001278)	Mycobacterium bovis BCG str. Mexico	11811063
YP_005172222.1	CDS	hsdM	NC_016804.1	3001275	3002897	R	Differs from Rv2756c by 1aa, P306L in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative type I restriction/modification system DNA methylase	complement(3001275..3002897)	Mycobacterium bovis BCG str. Mexico	11811064
YP_005172223.1	CDS	BCGMEX_2766c	NC_016804.1	3002984	3003400	R	hypothetical protein	complement(3002984..3003400)	Mycobacterium bovis BCG str. Mexico	11811065
YP_005172224.1	CDS	BCGMEX_2767c	NC_016804.1	3003397	3003663	R	hypothetical protein	complement(3003397..3003663)	Mycobacterium bovis BCG str. Mexico	11811066
YP_005172225.1	CDS	BCGMEX_2768c	NC_016804.1	3003689	3004084	R	hypothetical protein	complement(3003689..3004084)	Mycobacterium bovis BCG str. Mexico	11811067
YP_005172226.1	CDS	BCGMEX_2769c	NC_016804.1	3004081	3004350	R	hypothetical protein	complement(3004081..3004350)	Mycobacterium bovis BCG str. Mexico	11811068
YP_005172227.1	CDS	hsdS	NC_016804.1	3004360	3005454	R	putative type I restriction/modification system specificity determinant	complement(3004360..3005454)	Mycobacterium bovis BCG str. Mexico	11811069
YP_005172228.1	CDS	BCGMEX_2771c	NC_016804.1	3005451	3005723	R	In Mycobacterium tuberculosis strain H37Rv, Rv2762c exists as a single gene. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a single base transition splits Rv2762c into 2 parts; hypothetical protein	complement(3005451..3005723)	Mycobacterium bovis BCG str. Mexico	11811070
YP_005172229.1	CDS	BCGMEX_2772c	NC_016804.1	3005739	3005870	R	In Mycobacterium tuberculosis strain H37Rv, Rv2762c exists as a single gene. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a single base transition splits Rv2762c into 2 parts; hypothetical protein	complement(3005739..3005870)	Mycobacterium bovis BCG str. Mexico	11811071
YP_005172230.1	CDS	dfrA	NC_016804.1	3005944	3006423	R	putative dihydrofolate reductase	complement(3005944..3006423)	Mycobacterium bovis BCG str. Mexico	11811072
YP_005172231.1	CDS	thyA	NC_016804.1	3006494	3007285	R	Thymidylate synthase	complement(3006494..3007285)	Mycobacterium bovis BCG str. Mexico	11811073
YP_005172232.1	CDS	BCGMEX_2775	NC_016804.1	3007450	3008187	D	Differs from Rv2765 and Mb2787 by 1aa, I129M in BCG Pasteur, BCG Tokyo and BCG Mexico; hydrolase	3007450..3008187	Mycobacterium bovis BCG str. Mexico	11811074
YP_005172233.1	CDS	fabG	NC_016804.1	3008402	3009184	R	3-ketoacyl-ACP reductase	complement(3008402..3009184)	Mycobacterium bovis BCG str. Mexico	11811075
YP_005172234.1	CDS	BCGMEX_2777c	NC_016804.1	3009181	3009534	R	Differs from Rv2767c and Mb2789c by 1aa, L26S in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(3009181..3009534)	Mycobacterium bovis BCG str. Mexico	11811076
YP_005172235.1	CDS	PPE43	NC_016804.1	3009708	3010892	R	Differs from Rv2768c by 1aa, R263P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; PPE family protein	complement(3009708..3010892)	Mycobacterium bovis BCG str. Mexico	11811077
YP_005172236.1	CDS	PE27	NC_016804.1	3010972	3011799	R	Differs from Rv2769c by 2aa, S54P, M270V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; PE family protein	complement(3010972..3011799)	Mycobacterium bovis BCG str. Mexico	11811078
YP_005172237.1	CDS	PPE44	NC_016804.1	3012123	3013271	R	Differs from Rv2770c by 1aa, S194F in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; PPE family protein	complement(3012123..3013271)	Mycobacterium bovis BCG str. Mexico	11811079
YP_005172238.1	CDS	BCGMEX_2781c	NC_016804.1	3013395	3013847	R	Differs from Rv2771c by 1aa, P80L in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(3013395..3013847)	Mycobacterium bovis BCG str. Mexico	11811080
YP_005172239.1	CDS	BCGMEX_2782c	NC_016804.1	3013933	3014406	R	putative transmembrane protein	complement(3013933..3014406)	Mycobacterium bovis BCG str. Mexico	11811081
YP_005172240.1	CDS	dapB	NC_016804.1	3014418	3015155	R	Differs from Rv2773c by 1aa, I204T, and from Mb2795c by 1aa, D138E in BCG Pasteur, BCG Tokyo and BCG Mexico; dihydrodipicolinate reductase	complement(3014418..3015155)	Mycobacterium bovis BCG str. Mexico	11811082
YP_005172241.1	CDS	BCGMEX_2784c	NC_016804.1	3015166	3015570	R	hypothetical protein	complement(3015166..3015570)	Mycobacterium bovis BCG str. Mexico	11811083
YP_005172242.1	CDS	BCGMEX_2785	NC_016804.1	3015723	3016184	D	hypothetical protein	3015723..3016184	Mycobacterium bovis BCG str. Mexico	11811084
YP_005172243.1	CDS	BCGMEX_2786c	NC_016804.1	3016188	3017117	R	Oxidoreductase	complement(3016188..3017117)	Mycobacterium bovis BCG str. Mexico	11811085
YP_005172244.1	CDS	BCGMEX_2787c	NC_016804.1	3017299	3018369	R	hypothetical protein	complement(3017299..3018369)	Mycobacterium bovis BCG str. Mexico	11811086
YP_005172245.1	CDS	BCGMEX_2788c	NC_016804.1	3018527	3018997	R	hypothetical protein	complement(3018527..3018997)	Mycobacterium bovis BCG str. Mexico	11811087
YP_005172246.1	CDS	BCGMEX_2789c	NC_016804.1	3019029	3019568	R	In Mycobacterium bovis, a 24 bp deletion leads to a shorter product compared to its homolog in Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium tuberculosis strain H37Rv (171 aa versus 179 aa) Differs from Rv2779c by 1aa, I9M, and 8 aa longer than Mb2801c; AsnC family transcriptional regulator	complement(3019029..3019568)	Mycobacterium bovis BCG str. Mexico	11811088
YP_005172247.1	CDS	ald_a	NC_016804.1	3019634	3020032	D	In Mycobacterium tuberculosis strain H37Rv, ald exists as a single gene. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Tokio and in Mycobacterium bovis, a frameshift due to a single base deletion splits ald into 2 parts, alda and aldb; Secreted L-alanine dehydrogenase	3019634..3020032	Mycobacterium bovis BCG str. Mexico	11811089
YP_005172248.1	CDS	aldB	NC_016804.1	3020029	3020748	D	In Mycobacterium tuberculosis strain H37Rv, ald exists as a single gene. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and in Mycobacterium bovis, a frameshift due to a single base deletion splits ald into 2 parts, alda and aldb; Secreted L-alanine dehydrogenase	3020029..3020748	Mycobacterium bovis BCG str. Mexico	11811090
YP_005172249.1	CDS	BCGMEX_2792c	NC_016804.1	3020763	3021797	R	putative 2-nitropropane dioxygenase	complement(3020763..3021797)	Mycobacterium bovis BCG str. Mexico	11811091
YP_005172250.1	CDS	pepR	NC_016804.1	3021858	3023174	R	putative zinc protease	complement(3021858..3023174)	Mycobacterium bovis BCG str. Mexico	11811092
YP_005172251.1	CDS	gpsI	NC_016804.1	3023152	3025410	R	polyribonucleotide nucleotidyltransferase	complement(3023152..3025410)	Mycobacterium bovis BCG str. Mexico	11811093
YP_005172252.1	CDS	lppU	NC_016804.1	3025764	3026279	R	putative lipoprotein	complement(3025764..3026279)	Mycobacterium bovis BCG str. Mexico	11811094
YP_005172253.1	CDS	rpsO	NC_016804.1	3026292	3026561	R	30S ribosomal protein S15	complement(3026292..3026561)	Mycobacterium bovis BCG str. Mexico	11811095
YP_005172254.1	CDS	ribF	NC_016804.1	3026718	3027713	R	riboflavin kinase/FMN adenylyltransferase	complement(3026718..3027713)	Mycobacterium bovis BCG str. Mexico	11811096
YP_005172255.1	CDS	BCGMEX_2798	NC_016804.1	3027924	3029687	D	Differs from Rv2787 and Mb2810 by 1aa, P78T in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3027924..3029687	Mycobacterium bovis BCG str. Mexico	11811097
YP_005172256.1	CDS	sirR	NC_016804.1	3029772	3030458	D	Differs from Rv2788 by 1aa, A137D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transcriptional repressor	3029772..3030458	Mycobacterium bovis BCG str. Mexico	11811098
YP_005172257.1	CDS	fadE21	NC_016804.1	3030519	3031751	R	acyl-CoA dehydrogenase	complement(3030519..3031751)	Mycobacterium bovis BCG str. Mexico	11811099
YP_005172258.1	CDS	ltp1	NC_016804.1	3031777	3032982	R	putative lipid-transfer protein	complement(3031777..3032982)	Mycobacterium bovis BCG str. Mexico	11811100
YP_005172259.1	CDS	BCGMEX_2802c	NC_016804.1	3033015	3034394	R	putative transposase	complement(3033015..3034394)	Mycobacterium bovis BCG str. Mexico	11811101
YP_005172260.1	CDS	BCGMEX_2803c	NC_016804.1	3034394	3034975	R	Differs from Mb2815c by 2aa, A17V, T80E in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative resolvase	complement(3034394..3034975)	Mycobacterium bovis BCG str. Mexico	11811102
YP_005172261.1	CDS	truB	NC_016804.1	3035177	3036073	R	tRNA pseudouridine synthase B	complement(3035177..3036073)	Mycobacterium bovis BCG str. Mexico	11811103
YP_005172262.1	CDS	BCGMEX_2805c	NC_016804.1	3036070	3036753	R	Differs from Rv2794c by 1aa, V87M in Mycobacterium tuberculosis CDC1551 in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(3036070..3036753)	Mycobacterium bovis BCG str. Mexico	11811104
YP_005172263.1	CDS	BCGMEX_2806c	NC_016804.1	3036750	3037724	R	hypothetical protein	complement(3036750..3037724)	Mycobacterium bovis BCG str. Mexico	11811105
YP_005172264.1	CDS	lppV	NC_016804.1	3037869	3038432	R	Differs from Rv2796c by 1aa, F159C in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative lipoprotein	complement(3037869..3038432)	Mycobacterium bovis BCG str. Mexico	11811106
YP_005172265.1	CDS	BCGMEX_2808c	NC_016804.1	3038432	3040120	R	hypothetical protein	complement(3038432..3040120)	Mycobacterium bovis BCG str. Mexico	11811107
YP_005172266.1	CDS	BCGMEX_2809c	NC_016804.1	3040124	3040450	R	hypothetical protein	complement(3040124..3040450)	Mycobacterium bovis BCG str. Mexico	11811108
YP_005172267.1	CDS	BCGMEX_2810	NC_016804.1	3040581	3041210	D	hypothetical protein	3040581..3041210	Mycobacterium bovis BCG str. Mexico	11811109
YP_005172268.1	CDS	BCGMEX_2811	NC_016804.1	3041229	3042878	D	putative hydrolase	3041229..3042878	Mycobacterium bovis BCG str. Mexico	11811110
YP_005172269.1	CDS	BCGMEX_2812c	NC_016804.1	3042980	3043336	R	hypothetical protein	complement(3042980..3043336)	Mycobacterium bovis BCG str. Mexico	11811111
YP_005172270.1	CDS	BCGMEX_2813c	NC_016804.1	3043593	3044636	R	putative arginine and alanine rich protein	complement(3043593..3044636)	Mycobacterium bovis BCG str. Mexico	11811112
YP_005172271.1	CDS	BCGMEX_2814	NC_016804.1	3044635	3045102	D	hypothetical protein	3044635..3045102	Mycobacterium bovis BCG str. Mexico	11811113
YP_005172272.1	CDS	BCGMEX_2815c	NC_016804.1	3045278	3045907	R	Differs from Rv2804c by 2aa, T58A, V74A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(3045278..3045907)	Mycobacterium bovis BCG str. Mexico	11811114
YP_005172273.1	CDS	BCGMEX_2816	NC_016804.1	3045680	3046084	D	Differs from Rv2805 by 1aa, D4G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3045680..3046084	Mycobacterium bovis BCG str. Mexico	11811115
YP_005172274.1	CDS	BCGMEX_2817	NC_016804.1	3046081	3046272	D	hypothetical protein	3046081..3046272	Mycobacterium bovis BCG str. Mexico	11811116
YP_005172275.1	CDS	BCGMEX_2818	NC_016804.1	3046471	3047625	D	Differs from Rv2807 by 2aa, V72E, T349M, and from Mb2830 by 1aa, T349M in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3046471..3047625	Mycobacterium bovis BCG str. Mexico	11811117
YP_005172276.1	CDS	BCGMEX_2819	NC_016804.1	3047859	3048116	D	hypothetical protein	3047859..3048116	Mycobacterium bovis BCG str. Mexico	11811118
YP_005172277.1	CDS	BCGMEX_2820	NC_016804.1	3048221	3048532	D	Differs from Rv2809 by 1aa, P46T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3048221..3048532	Mycobacterium bovis BCG str. Mexico	11811119
YP_005172278.1	CDS	BCGMEX_2822	NC_016804.1	3048952	3049560	D	hypothetical protein	3048952..3049560	Mycobacterium bovis BCG str. Mexico	11811121
YP_005172279.1	CDS	BCGMEX_2823	NC_016804.1	3049631	3051040	D	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium tuberculosis strain H37Rv, Rv2812 exists as a single gene. In Mycobacterium bovis, a frameshift due to a 2 bp deletion splits Rv2812 into 2 parts, Mb2835 and Mb2836. Differs from Rv2812 by 1 aa, G395R; putative transposase	3049631..3051040	Mycobacterium bovis BCG str. Mexico	11811122
YP_005172280.1	CDS	BCGMEX_2824	NC_016804.1	3051037	3051849	D	Differs from Rv2813 by 1aa, V76I in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3051037..3051849	Mycobacterium bovis BCG str. Mexico	11811123
YP_005172281.1	CDS	BCGMEX_2825c	NC_016804.1	3053452	3054288	R	putative transposase	complement(3053452..3054288)	Mycobacterium bovis BCG str. Mexico	11811124
YP_005172282.1	CDS	BCGMEX_2826c	NC_016804.1	3054387	3054713	R	putative transposase	complement(3054387..3054713)	Mycobacterium bovis BCG str. Mexico	11811125
YP_005172283.1	CDS	BCGMEX_2827c	NC_016804.1	3056967	3057308	R	hypothetical protein	complement(3056967..3057308)	Mycobacterium bovis BCG str. Mexico	11811126
YP_005172284.1	CDS	BCGMEX_2828c	NC_016804.1	3057309	3058325	R	hypothetical protein	complement(3057309..3058325)	Mycobacterium bovis BCG str. Mexico	11811127
YP_005172285.1	CDS	BCGMEX_2830c	NC_016804.1	3058575	3059585	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a single base transition introduces a premature stop codon that leads to a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (336 aa versus 382 aa); hypothetical protein	complement(3058575..3059585)	Mycobacterium bovis BCG str. Mexico	11811129
YP_005172286.1	CDS	BCGMEX_2831c	NC_016804.1	3059582	3060709	R	hypothetical protein	complement(3059582..3060709)	Mycobacterium bovis BCG str. Mexico	11811130
YP_005172287.1	CDS	BCGMEX_2832c	NC_016804.1	3060706	3061614	R	Csm4 family CRISPR-associated ramp protein	complement(3060706..3061614)	Mycobacterium bovis BCG str. Mexico	11811131
YP_005172288.1	CDS	BCGMEX_2833c	NC_016804.1	3061595	3062305	R	Csm3 family CRISPR-associated ramp protein	complement(3061595..3062305)	Mycobacterium bovis BCG str. Mexico	11811132
YP_005172289.1	CDS	BCGMEX_2834c	NC_016804.1	3062315	3062689	R	hypothetical protein	complement(3062315..3062689)	Mycobacterium bovis BCG str. Mexico	11811133
YP_005172290.1	CDS	BCGMEX_2835c	NC_016804.1	3062686	3065124	R	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 9 bp insertion leads to a longer product compared to its homolog in Mycobacterium tuberculosis strain H37Rv; hypothetical protein	complement(3062686..3065124)	Mycobacterium bovis BCG str. Mexico	11811134
YP_005172291.1	CDS	BCGMEX_2836c	NC_016804.1	3065121	3066065	R	Differs from Mb2848c by 1aa H56P in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(3065121..3066065)	Mycobacterium bovis BCG str. Mexico	11811135
YP_005172292.1	CDS	BCGMEX_2837c	NC_016804.1	3066243	3066890	R	Differs from Rv2825c by 5aa, E2K, C162S, L189V, Q192T, E195A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(3066243..3066890)	Mycobacterium bovis BCG str. Mexico	11811136
YP_005172293.1	CDS	BCGMEX_2838c	NC_016804.1	3067060	3067944	R	hypothetical protein	complement(3067060..3067944)	Mycobacterium bovis BCG str. Mexico	11811137
YP_005172294.1	CDS	BCGMEX_2839c	NC_016804.1	3067947	3068834	R	hypothetical protein	complement(3067947..3068834)	Mycobacterium bovis BCG str. Mexico	11811138
YP_005172295.1	CDS	BCGMEX_2840c	NC_016804.1	3069139	3069684	R	Differs from Mb2852c by 1aa E58A in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(3069139..3069684)	Mycobacterium bovis BCG str. Mexico	11811139
YP_005172296.1	CDS	BCGMEX_2841c	NC_016804.1	3069681	3069950	R	hypothetical protein	complement(3069681..3069950)	Mycobacterium bovis BCG str. Mexico	11811140
YP_005172297.1	CDS	BCGMEX_2842c	NC_016804.1	3069971	3070363	R	hypothetical protein	complement(3069971..3070363)	Mycobacterium bovis BCG str. Mexico	11811141
YP_005172298.1	CDS	BCGMEX_2843c	NC_016804.1	3070360	3070575	R	Differs from Rv2830c by 1aa, V56A in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(3070360..3070575)	Mycobacterium bovis BCG str. Mexico	11811142
YP_005172299.1	CDS	echA16	NC_016804.1	3070622	3071371	D	Differs from Mb2855 by 1aa, R227C in Mycobacterium tuberculosis, BCG Pasteur, BCG Tokyo and BCG Mexico; Enoyl-CoA hydratase	3070622..3071371	Mycobacterium bovis BCG str. Mexico	11811143
YP_005172300.1	CDS	ugpC	NC_016804.1	3071450	3072532	R	Differs from Rv2832c and Mb2856c by 1aa, L235F in BCG Pasteur, BCG Tokyo and BCG Mexico; putative SN-glycerol-3-phosphate transport ATP-binding protein ABC transporter	complement(3071450..3072532)	Mycobacterium bovis BCG str. Mexico	11811144
YP_005172301.1	CDS	ugpBa	NC_016804.1	3073203	3073835	R	In mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a single base mutation at corresponding position 3093840, in Mycobacterium tuberculosis H37Rv strain, leads to a stop codon and break ugpB in two parts. Differs from Rv2833c by 2aa, I111S, L174P in BCG Pasteur, BCG Tokyo and BCG Mexico; glycerol-3-phosphate ABC transporter periplasmic substrate-binding protein	complement(3073203..3073835)	Mycobacterium bovis BCG str. Mexico	11811146
YP_005172302.1	CDS	ugpE	NC_016804.1	3073838	3074665	R	putative sn-glycerol-3-phosphate transport integral membrane protein ABC transporter	complement(3073838..3074665)	Mycobacterium bovis BCG str. Mexico	11811147
YP_005172303.1	CDS	ugpA	NC_016804.1	3074662	3075573	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium tuberculosis strain H37Rv, ugpA exists as a single gene. In Mycobacterium bovis, a frameshift due to a single base deletion splits ugpA into 2 parts, ugpAa and ugpAb; putative sn-glycerol-3-phosphate transport integral membrane protein ABC transporter	complement(3074662..3075573)	Mycobacterium bovis BCG str. Mexico	11811148
YP_005172304.1	CDS	dinF	NC_016804.1	3075660	3076979	R	Differs from Rv2836c by 2aa, H157Q, L350P, and from Mb2861c by 1aa, H157Q in BCG Pasteur, BCG Tokyo and BCG Mexico; putative DNA-damage-inducible protein F	complement(3075660..3076979)	Mycobacterium bovis BCG str. Mexico	11811149
YP_005172305.1	CDS	BCGMEX_2851c	NC_016804.1	3076986	3077996	R	hypothetical protein	complement(3076986..3077996)	Mycobacterium bovis BCG str. Mexico	11811150
YP_005172306.1	CDS	rbfA	NC_016804.1	3077971	3078522	R	ribosome-binding factor A	complement(3077971..3078522)	Mycobacterium bovis BCG str. Mexico	11811151
YP_005172307.1	CDS	infB	NC_016804.1	3078522	3081224	R	translation initiation factor IF-2	complement(3078522..3081224)	Mycobacterium bovis BCG str. Mexico	11811152
YP_005172308.1	CDS	BCGMEX_2854c	NC_016804.1	3081310	3081609	R	hypothetical protein	complement(3081310..3081609)	Mycobacterium bovis BCG str. Mexico	11811153
YP_005172309.1	CDS	nusA	NC_016804.1	3081736	3082779	R	Transcription elongation protein	complement(3081736..3082779)	Mycobacterium bovis BCG str. Mexico	11811154
YP_005172310.1	CDS	rimP	NC_016804.1	3082776	3083327	R	ribosome maturation factor	complement(3082776..3083327)	Mycobacterium bovis BCG str. Mexico	11811155
YP_005172311.1	CDS	BCGMEX_2857	NC_016804.1	3083522	3084067	D	putative transmembrane alanine rich protein	3083522..3084067	Mycobacterium bovis BCG str. Mexico	11811156
YP_005172312.1	CDS	BCGMEX_2858	NC_016804.1	3084064	3084552	D	hypothetical protein	3084064..3084552	Mycobacterium bovis BCG str. Mexico	11811157
YP_005172313.1	CDS	proS	NC_016804.1	3084553	3086301	R	Differs from Rv2845c by 2aa, R177H, T232A in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; prolyl-tRNA synthetase	complement(3084553..3086301)	Mycobacterium bovis BCG str. Mexico	11811158
YP_005172314.1	CDS	efpA	NC_016804.1	3086390	3087982	R	Differs from Rv2846c by 1aa, R15T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane efflux protein	complement(3086390..3087982)	Mycobacterium bovis BCG str. Mexico	11811159
YP_005172315.1	CDS	cysG	NC_016804.1	3088005	3089222	R	multifunctional enzyme siroheme synthase	complement(3088005..3089222)	Mycobacterium bovis BCG str. Mexico	11811160
YP_005172316.1	CDS	cobB	NC_016804.1	3089499	3090872	R	Cobyrinic acid a,c-diamide synthase	complement(3089499..3090872)	Mycobacterium bovis BCG str. Mexico	11811161
YP_005172317.1	CDS	cobO	NC_016804.1	3090872	3091495	R	Differs from Rv2849c by 1aa C120W in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Cob(I)alamin adenosyltransferase	complement(3090872..3091495)	Mycobacterium bovis BCG str. Mexico	11811162
YP_005172318.1	CDS	BCGMEX_2864c	NC_016804.1	3091516	3093405	R	Differs from Rv2850c by 2aa, Q273R, S446G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative magnesium chelatase	complement(3091516..3093405)	Mycobacterium bovis BCG str. Mexico	11811163
YP_005172319.1	CDS	BCGMEX_2865c	NC_016804.1	3093402	3093872	R	hypothetical protein	complement(3093402..3093872)	Mycobacterium bovis BCG str. Mexico	11811164
YP_005172320.1	CDS	mqo	NC_016804.1	3093931	3095412	R	Malate:quinone oxidoreductase	complement(3093931..3095412)	Mycobacterium bovis BCG str. Mexico	11811165
YP_005172321.1	CDS	PE_PGRS48	NC_016804.1	3095619	3097412	D	Differs from Rv2853 by 3aa, N227K, G228R, D232G, and 18aa deletion, and from Mb2878 by 1aa, D184G, and same 18aa deletion in BCG Pasteur, BCG Tokyo and BCG Mexico; PE-PGRS family protein	3095619..3097412	Mycobacterium bovis BCG str. Mexico	11811166
YP_005172322.1	CDS	BCGMEX_2868	NC_016804.1	3097449	3098489	D	hypothetical protein	3097449..3098489	Mycobacterium bovis BCG str. Mexico	11811167
YP_005172323.1	CDS	mtr	NC_016804.1	3098502	3099881	D	NADPH-dependent mycothiol reductase	3098502..3099881	Mycobacterium bovis BCG str. Mexico	11811168
YP_005172324.1	CDS	nicT	NC_016804.1	3099981	3101099	D	putative nickel-transport integral membrane protein	3099981..3101099	Mycobacterium bovis BCG str. Mexico	11811169
YP_005172325.1	CDS	BCGMEX_2871	NC_016804.1	3101165	3101497	D	Truncated hydrogenase nickel incorporation protein	3101165..3101497	Mycobacterium bovis BCG str. Mexico	11811170
YP_005172326.1	CDS	BCGMEX_2872	NC_016804.1	3101509	3101724	D	Truncated hydrogenase nickel incorporation protein	3101509..3101724	Mycobacterium bovis BCG str. Mexico	11811171
YP_005172327.1	CDS	BCGMEX_2873c	NC_016804.1	3101880	3102656	R	short-chain dehydrogenase	complement(3101880..3102656)	Mycobacterium bovis BCG str. Mexico	11811172
YP_005172328.1	CDS	aldC	NC_016804.1	3102653	3104020	R	putative aldehyde dehydrogenase	complement(3102653..3104020)	Mycobacterium bovis BCG str. Mexico	11811173
YP_005172329.1	CDS	BCGMEX_2875c	NC_016804.1	3104017	3104943	R	putative amidotransferase	complement(3104017..3104943)	Mycobacterium bovis BCG str. Mexico	11811174
YP_005172330.1	CDS	glnA4	NC_016804.1	3104924	3106297	R	putative glutamine synthetase	complement(3104924..3106297)	Mycobacterium bovis BCG str. Mexico	11811175
YP_005172331.1	CDS	mapB	NC_016804.1	3106457	3107314	R	methionine aminopeptidase	complement(3106457..3107314)	Mycobacterium bovis BCG str. Mexico	11811176
YP_005172332.1	CDS	BCGMEX_2878c	NC_016804.1	3107356	3107940	R	Differs from Rv2862c by 2aa, P18R, R50C in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(3107356..3107940)	Mycobacterium bovis BCG str. Mexico	11811177
YP_005172333.1	CDS	BCGMEX_2879	NC_016804.1	3108289	3108669	D	hypothetical protein	3108289..3108669	Mycobacterium bovis BCG str. Mexico	11811178
YP_005172334.1	CDS	BCGMEX_2880c	NC_016804.1	3108751	3110562	R	putative penicillin-binding lipoprotein	complement(3108751..3110562)	Mycobacterium bovis BCG str. Mexico	11811179
YP_005172335.1	CDS	BCGMEX_2881	NC_016804.1	3110834	3111115	D	hypothetical protein	3110834..3111115	Mycobacterium bovis BCG str. Mexico	11811180
YP_005172336.1	CDS	BCGMEX_2882	NC_016804.1	3111119	3111382	D	hypothetical protein	3111119..3111382	Mycobacterium bovis BCG str. Mexico	11811181
YP_005172337.1	CDS	BCGMEX_2883c	NC_016804.1	3111755	3112609	R	hypothetical protein	complement(3111755..3112609)	Mycobacterium bovis BCG str. Mexico	11811182
YP_005172338.1	CDS	ispG	NC_016804.1	3112665	3113828	R	Differs from Mb2893c by 1aa, D373A in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	complement(3112665..3113828)	Mycobacterium bovis BCG str. Mexico	11811183
YP_005172339.1	CDS	BCGMEX_2885c	NC_016804.1	3113845	3115059	R	Differs from Mb2894c by 1aa, T330A, and from Rv2869c by 2aa, F259V, T330A in BCG Pasteur, BCG Tokyo and BCG Mexico; putative zinc metalloprotease	complement(3113845..3115059)	Mycobacterium bovis BCG str. Mexico	11811184
YP_005172340.1	CDS	dxr	NC_016804.1	3115067	3116308	R	1-deoxy-D-xylulose 5-phosphate reductoisomerase	complement(3115067..3116308)	Mycobacterium bovis BCG str. Mexico	11811185
YP_005172341.1	CDS	BCGMEX_2887	NC_016804.1	3116435	3116692	D	hypothetical protein	3116435..3116692	Mycobacterium bovis BCG str. Mexico	11811186
YP_005172342.1	CDS	BCGMEX_2888	NC_016804.1	3116679	3117122	D	Differs from Rv2872 and Mb2897 by 1aa, T72A in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3116679..3117122	Mycobacterium bovis BCG str. Mexico	11811187
YP_005172343.1	CDS	mpb83	NC_016804.1	3117202	3117864	D	cell surface lipoprotein	3117202..3117864	Mycobacterium bovis BCG str. Mexico	11811188
YP_005172344.1	CDS	BCGMEX_2890	NC_016804.1	3117960	3118151	D	hypothetical protein	3117960..3118151	Mycobacterium bovis BCG str. Mexico	11811189
YP_005172345.1	CDS	dipZ	NC_016804.1	3118144	3120231	D	Differs from Rv2874 by 1aa, D672Y in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative integral membrane c-type cytochrome biogenesis protein	3118144..3120231	Mycobacterium bovis BCG str. Mexico	11811190
YP_005172346.1	CDS	mpb70	NC_016804.1	3120327	3120908	D	immunogenic protein MPB70	3120327..3120908	Mycobacterium bovis BCG str. Mexico	11811191
YP_005172347.1	CDS	BCGMEX_2893	NC_016804.1	3120960	3121274	D	Differs from Mb2901 by 1aa, D101G, and from Rv2876 by 2aa, R44W, D101G in BCG Pasteur and BCG Mexico; transmembrane protein	3120960..3121274	Mycobacterium bovis BCG str. Mexico	11811192
YP_005172348.1	CDS	BCGMEX_2894c	NC_016804.1	3121305	3122168	R	Differs from Rv2877c by 1aa, H35Y in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative integral membrane protein	complement(3121305..3122168)	Mycobacterium bovis BCG str. Mexico	11811193
YP_005172349.1	CDS	mpb53	NC_016804.1	3122173	3122694	R	Soluble secreted antigen	complement(3122173..3122694)	Mycobacterium bovis BCG str. Mexico	11811194
YP_005172350.1	CDS	rlmN	NC_016804.1	3122880	3123974	R	In Mycobacterium tuberculosis strain H37Rv, Rv2880cand Rv2879c exist as 2 genes. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a single base deletion leads to a single product; ribosomal RNA large subunit methyltransferase N	complement(3122880..3123974)	Mycobacterium bovis BCG str. Mexico	11811195
YP_005172351.1	CDS	cdsA	NC_016804.1	3123997	3124917	R	phosphatidate cytidylyltransferase	complement(3123997..3124917)	Mycobacterium bovis BCG str. Mexico	11811196
YP_005172352.1	CDS	frr	NC_016804.1	3124940	3125497	R	Differs from Mb2906c and Rv2882c by 1aa, L50P in BCG Pasteur, BCG Tokyo and BCG Mexico; ribosome recycling factor	complement(3124940..3125497)	Mycobacterium bovis BCG str. Mexico	11811197
YP_005172353.1	CDS	pyrH	NC_016804.1	3125669	3126454	R	uridylate kinase	complement(3125669..3126454)	Mycobacterium bovis BCG str. Mexico	11811198
YP_005172354.1	CDS	BCGMEX_2900	NC_016804.1	3126689	3127447	D	putative transcriptional regulatory protein	3126689..3127447	Mycobacterium bovis BCG str. Mexico	11811199
YP_005172355.1	CDS	BCGMEX_2901c	NC_016804.1	3127526	3128845	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a single base insertion leads to a truncation resulting in a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (439 aa versus 460 aa); putative transposase	complement(3127526..3128845)	Mycobacterium bovis BCG str. Mexico	11811200
YP_005172356.1	CDS	BCGMEX_2902c	NC_016804.1	3128842	3129729	R	putative resolvase	complement(3128842..3129729)	Mycobacterium bovis BCG str. Mexico	11811201
YP_005172357.1	CDS	BCGMEX_2903	NC_016804.1	3129728	3130147	D	putative transcriptional regulatory protein	3129728..3130147	Mycobacterium bovis BCG str. Mexico	11811202
YP_005172358.1	CDS	amiC	NC_016804.1	3130161	3131582	R	amidase	complement(3130161..3131582)	Mycobacterium bovis BCG str. Mexico	11811203
YP_005172359.1	CDS	tsf	NC_016804.1	3131589	3132404	R	Differs from Rv2889c by 1aa, M259T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Translation elongation factor	complement(3131589..3132404)	Mycobacterium bovis BCG str. Mexico	11811204
YP_005172360.1	CDS	rpsB	NC_016804.1	3132416	3133279	R	30S ribosomal protein S2	complement(3132416..3133279)	Mycobacterium bovis BCG str. Mexico	11811205
YP_005172361.1	CDS	BCGMEX_2907	NC_016804.1	3133563	3134312	D	hypothetical protein	3133563..3134312	Mycobacterium bovis BCG str. Mexico	11811206
YP_005172362.1	CDS	PPE45	NC_016804.1	3134091	3135317	R	PPE family protein	complement(3134091..3135317)	Mycobacterium bovis BCG str. Mexico	11811207
YP_005172363.1	CDS	BCGMEX_2909	NC_016804.1	3135717	3136694	D	putative oxidoreductase	3135717..3136694	Mycobacterium bovis BCG str. Mexico	11811208
YP_005172364.1	CDS	xerC	NC_016804.1	3136691	3137587	R	tyrosine recombinase	complement(3136691..3137587)	Mycobacterium bovis BCG str. Mexico	11811209
YP_005172365.1	CDS	viuB	NC_016804.1	3137678	3138529	R	putative mycobactin utilization protein	complement(3137678..3138529)	Mycobacterium bovis BCG str. Mexico	11811210
YP_005172366.1	CDS	BCGMEX_2912c	NC_016804.1	3138562	3139731	R	Differs from Rv2896c by 2aa, G57E, A153S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(3138562..3139731)	Mycobacterium bovis BCG str. Mexico	11811211
YP_005172367.1	CDS	BCGMEX_2913c	NC_016804.1	3139728	3141239	R	hypothetical protein	complement(3139728..3141239)	Mycobacterium bovis BCG str. Mexico	11811212
YP_005172368.1	CDS	BCGMEX_2914c	NC_016804.1	3141239	3141625	R	hypothetical protein	complement(3141239..3141625)	Mycobacterium bovis BCG str. Mexico	11811213
YP_005172369.1	CDS	fdhD	NC_016804.1	3141873	3142703	R	protein fdhD-like protein	complement(3141873..3142703)	Mycobacterium bovis BCG str. Mexico	11811214
YP_005172370.1	CDS	fdhF	NC_016804.1	3142703	3145042	R	putative formate dehydrogenase	complement(3142703..3145042)	Mycobacterium bovis BCG str. Mexico	11811215
YP_005172371.1	CDS	BCGMEX_2917c	NC_016804.1	3145100	3145405	R	hypothetical protein	complement(3145100..3145405)	Mycobacterium bovis BCG str. Mexico	11811216
YP_005172372.1	CDS	rnhB	NC_016804.1	3145459	3146253	R	Differs from Mb2926c by 1aa, R106H in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; ribonuclease HII	complement(3145459..3146253)	Mycobacterium bovis BCG str. Mexico	11811217
YP_005172373.1	CDS	lepB	NC_016804.1	3146267	3147151	R	Differs from Rv2903c by 1aa, N2564D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Signal peptidase I	complement(3146267..3147151)	Mycobacterium bovis BCG str. Mexico	11811218
YP_005172374.1	CDS	rplS	NC_016804.1	3147209	3147550	R	50S ribosomal protein L19	complement(3147209..3147550)	Mycobacterium bovis BCG str. Mexico	11811219
YP_005172375.1	CDS	lppW	NC_016804.1	3147925	3148869	D	putative lipoprotein	3147925..3148869	Mycobacterium bovis BCG str. Mexico	11811220
YP_005172376.1	CDS	trmD	NC_016804.1	3148962	3149654	R	tRNA (Guanine37-N1) -methyltransferase	complement(3148962..3149654)	Mycobacterium bovis BCG str. Mexico	11811221
YP_005172377.1	CDS	rimM	NC_016804.1	3149658	3150188	R	16S rRNA processing protein	complement(3149658..3150188)	Mycobacterium bovis BCG str. Mexico	11811222
YP_005172378.1	CDS	BCGMEX_2924c	NC_016804.1	3150202	3150444	R	hypothetical protein	complement(3150202..3150444)	Mycobacterium bovis BCG str. Mexico	11811223
YP_005172379.1	CDS	rpsP	NC_016804.1	3150452	3150940	R	30S ribosomal protein S16	complement(3150452..3150940)	Mycobacterium bovis BCG str. Mexico	11811224
YP_005172380.1	CDS	BCGMEX_2926c	NC_016804.1	3151124	3151567	R	hypothetical protein	complement(3151124..3151567)	Mycobacterium bovis BCG str. Mexico	11811225
YP_005172381.1	CDS	dacB2	NC_016804.1	3151636	3152511	D	putative D-alanyl-D-alanine carboxypeptidase	3151636..3152511	Mycobacterium bovis BCG str. Mexico	11811226
YP_005172382.1	CDS	BCGMEX_2928c	NC_016804.1	3152571	3153158	R	TetR family transcriptional regulator	complement(3152571..3153158)	Mycobacterium bovis BCG str. Mexico	11811227
YP_005172383.1	CDS	BCGMEX_2929c	NC_016804.1	3153160	3154995	R	hypothetical protein	complement(3153160..3154995)	Mycobacterium bovis BCG str. Mexico	11811228
YP_005172384.1	CDS	pknI	NC_016804.1	3155064	3156821	R	putative serine/threonine-protein kinase	complement(3155064..3156821)	Mycobacterium bovis BCG str. Mexico	11811229
YP_005172385.1	CDS	BCGMEX_2931c	NC_016804.1	3156865	3157977	R	hypothetical protein	complement(3156865..3157977)	Mycobacterium bovis BCG str. Mexico	11811230
YP_005172386.1	CDS	ffh	NC_016804.1	3158005	3159582	R	putative signal recognition particle protein	complement(3158005..3159582)	Mycobacterium bovis BCG str. Mexico	11811231
YP_005172387.1	CDS	BCGMEX_2933	NC_016804.1	3159660	3161540	D	Differs from Rv2917 by 1aa, L594R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3159660..3161540	Mycobacterium bovis BCG str. Mexico	11811232
YP_005172388.1	CDS	glnD	NC_016804.1	3161551	3163977	R	Differs from Rv2918c by 1aa, W494R and Mb2942c by 1aa, L223R in BCG Pasteur, BCG Tokyo and BCG Mexico; PII uridylyl-transferase	complement(3161551..3163977)	Mycobacterium bovis BCG str. Mexico	11811233
YP_005172389.1	CDS	glnB	NC_016804.1	3164035	3164373	R	nitrogen regulatory protein P-II	complement(3164035..3164373)	Mycobacterium bovis BCG str. Mexico	11811234
YP_005172390.1	CDS	amt	NC_016804.1	3164370	3165803	R	putative ammonia channel	complement(3164370..3165803)	Mycobacterium bovis BCG str. Mexico	11811235
YP_005172391.1	CDS	ftsY	NC_016804.1	3166280	3167548	R	cell division protein ftsY-like protein	complement(3166280..3167548)	Mycobacterium bovis BCG str. Mexico	11811236
YP_005172392.1	CDS	smc	NC_016804.1	3167598	3171215	R	Differs from Rv2922c by 2aa, R364L, G698R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative chromosome partition protein	complement(3167598..3171215)	Mycobacterium bovis BCG str. Mexico	11811237
YP_005172393.1	CDS	acyP	NC_016804.1	3171227	3171508	R	acylphosphatase	complement(3171227..3171508)	Mycobacterium bovis BCG str. Mexico	11811238
YP_005172394.1	CDS	BCGMEX_2940c	NC_016804.1	3171495	3171908	R	hypothetical protein	complement(3171495..3171908)	Mycobacterium bovis BCG str. Mexico	11811239
YP_005172395.1	CDS	fpg	NC_016804.1	3172010	3172879	R	Formamidopyrimidine-DNA glycosylase	complement(3172010..3172879)	Mycobacterium bovis BCG str. Mexico	11811240
YP_005172396.1	CDS	rnc	NC_016804.1	3173183	3173905	R	ribonuclease III	complement(3173183..3173905)	Mycobacterium bovis BCG str. Mexico	11811241
YP_005172397.1	CDS	BCGMEX_2943c	NC_016804.1	3173902	3174525	R	hypothetical protein	complement(3173902..3174525)	Mycobacterium bovis BCG str. Mexico	11811242
YP_005172398.1	CDS	BCGMEX_2944c	NC_016804.1	3174576	3175313	R	hypothetical protein	complement(3174576..3175313)	Mycobacterium bovis BCG str. Mexico	11811243
YP_005172399.1	CDS	tesA	NC_016804.1	3175552	3176337	D	putative thioesterase	3175552..3176337	Mycobacterium bovis BCG str. Mexico	11811244
YP_005172400.1	CDS	BCGMEX_2946	NC_016804.1	3176324	3176635	D	hypothetical protein	3176324..3176635	Mycobacterium bovis BCG str. Mexico	11811245
YP_005172401.1	CDS	fadD26	NC_016804.1	3177051	3178802	D	Differs from Rv2930 by 1aa, V240M in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; acyl-CoA synthase	3177051..3178802	Mycobacterium bovis BCG str. Mexico	11811246
YP_005172402.1	CDS	ppsA	NC_016804.1	3178799	3184429	D	Differs from Rv2931 at several positions in BCG Pasteur, BCG Tokyo and BCG Mexico; phenolpthiocerol synthesis polyketide synthase	3178799..3184429	Mycobacterium bovis BCG str. Mexico	11811247
YP_005172403.1	CDS	ppsB	NC_016804.1	3184426	3189042	D	Differs from Mb2957 and Rv2932 at several positions in BCG Pasteur, BCG Tokyo and BCG Mexico; phenolpthiocerol synthesis polyketide synthase	3184426..3189042	Mycobacterium bovis BCG str. Mexico	11811248
YP_005172404.1	CDS	ppsC	NC_016804.1	3189039	3195605	D	phenolpthiocerol synthesis type-I polyketide synthase	3189039..3195605	Mycobacterium bovis BCG str. Mexico	11811249
YP_005172405.1	CDS	ppsD	NC_016804.1	3195602	3201085	D	Differs from Rv2934 at several positions in BCG Pasteur, BCG Tokyo and BCG Mexico; phenolpthiocerol synthesis type-I polyketide synthase	3195602..3201085	Mycobacterium bovis BCG str. Mexico	11811250
YP_005172406.1	CDS	ppsE	NC_016804.1	3201091	3205557	D	Differs from Rv2935 at several positions in BCG Pasteur, BCG Tokyo and BCG Mexico; phenolpthiocerol synthesis type-I polyketide synthase	3201091..3205557	Mycobacterium bovis BCG str. Mexico	11811251
YP_005172407.1	CDS	drrA	NC_016804.1	3205568	3206563	D	Differs from Rv2936 by 1aa, D309H in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative daunorubicin-DIM-transport ATP-binding protein ABC transporter	3205568..3206563	Mycobacterium bovis BCG str. Mexico	11811252
YP_005172408.1	CDS	drrB	NC_016804.1	3206560	3207429	D	putative daunorubicin-DIM-transport integral membrane protein ABC transporter	3206560..3207429	Mycobacterium bovis BCG str. Mexico	11811253
YP_005172409.1	CDS	drrC	NC_016804.1	3207426	3208256	D	putative daunorubicin-DIM-transport integral membrane protein ABC transporter	3207426..3208256	Mycobacterium bovis BCG str. Mexico	11811254
YP_005172410.1	CDS	papA5	NC_016804.1	3208303	3209571	D	phthiocerol/phthiodiolone dimycocerosyl transferase	3208303..3209571	Mycobacterium bovis BCG str. Mexico	11811255
YP_005172411.1	CDS	mas	NC_016804.1	3209734	3216069	R	multifunctional mycocerosic acid synthase membrane-associated	complement(3209734..3216069)	Mycobacterium bovis BCG str. Mexico	11811256
YP_005172412.1	CDS	fadD28	NC_016804.1	3216689	3218431	D	Differs from Mb2966 by 1aa, S2I, and Rv2941 by 1aa, R53Q in BCG Pasteur, BCG Tokio and BCG Mexico; acyl-CoA synthetase	3216689..3218431	Mycobacterium bovis BCG str. Mexico	11811257
YP_005172413.1	CDS	mmpL7	NC_016804.1	3218424	3221186	D	transmembrane transport protein	3218424..3221186	Mycobacterium bovis BCG str. Mexico	11811258
YP_005172414.1	CDS	BCGMEX_2960	NC_016804.1	3221818	3223059	D	putative transposase for insertion sequence element IS1533	3221818..3223059	Mycobacterium bovis BCG str. Mexico	11811259
YP_005172415.1	CDS	BCGMEX_2961	NC_016804.1	3223059	3223589	D	putative transposase	3223059..3223589	Mycobacterium bovis BCG str. Mexico	11811260
YP_005172416.1	CDS	lppX	NC_016804.1	3223978	3224679	R	putative lipoprotein	complement(3223978..3224679)	Mycobacterium bovis BCG str. Mexico	11811261
YP_005172417.1	CDS	pks1	NC_016804.1	3225028	3231366	R	In Mycobacterium tuberculosis H37Rv, pks1 and pks15 exist as 2 genes. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a single base insertion results in a single product that is more similar to pks1. Differs from Rv2946c by 2aa, G1779V, V1859A, and from Rv2947c by 2aa, A333V, R374G in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; putative polyketide synthase1	complement(3225028..3231366)	Mycobacterium bovis BCG str. Mexico	11811262
YP_005172418.1	CDS	fadD22	NC_016804.1	3231363	3233480	R	long-chain-fatty-acid--CoA ligase	complement(3231363..3233480)	Mycobacterium bovis BCG str. Mexico	11811263
YP_005172419.1	CDS	BCGMEX_2965c	NC_016804.1	3233497	3234096	R	chorismate--pyruvate lyase	complement(3233497..3234096)	Mycobacterium bovis BCG str. Mexico	11811264
YP_005172420.1	CDS	fadD29	NC_016804.1	3234122	3235981	R	Differs from Rv2950c by 1aa, T402A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Fatty-acid-CoA ligase	complement(3234122..3235981)	Mycobacterium bovis BCG str. Mexico	11811265
YP_005172421.1	CDS	BCGMEX_2967c	NC_016804.1	3236629	3237774	R	putative oxidoreductase	complement(3236629..3237774)	Mycobacterium bovis BCG str. Mexico	11811266
YP_005172422.1	CDS	BCGMEX_2968	NC_016804.1	3237967	3238779	D	putative methyltransferase	3237967..3238779	Mycobacterium bovis BCG str. Mexico	11811267
YP_005172423.1	CDS	BCGMEX_2969	NC_016804.1	3238805	3240061	D	Trans-acting enoyl reductase	3238805..3240061	Mycobacterium bovis BCG str. Mexico	11811268
YP_005172424.1	CDS	BCGMEX_2970c	NC_016804.1	3240192	3240917	R	Differs from Rv2954c and Mb2978c by 1aa, Q194R in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(3240192..3240917)	Mycobacterium bovis BCG str. Mexico	11811269
YP_005172425.1	CDS	BCGMEX_2971c	NC_016804.1	3241106	3242071	R	Differs from Rv2955c by 1aa, H27R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(3241106..3242071)	Mycobacterium bovis BCG str. Mexico	11811270
YP_005172426.1	CDS	BCGMEX_2972	NC_016804.1	3242194	3242925	D	Differs from Rv2956 by 1aa, T237I in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3242194..3242925	Mycobacterium bovis BCG str. Mexico	11811271
YP_005172427.1	CDS	BCGMEX_2973	NC_016804.1	3242996	3243823	D	putative glycosyl transferase	3242996..3243823	Mycobacterium bovis BCG str. Mexico	11811272
YP_005172428.1	CDS	BCGMEX_2974c	NC_016804.1	3244427	3245527	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a frameshift due to a single base insertion leads to a shorter product with a different COOH part compared to its homolog in Mycobacterium tuberculosis strain H37Rv; putative glycosyl transferase	complement(3244427..3245527)	Mycobacterium bovis BCG str. Mexico	11811273
YP_005172429.1	CDS	BCGMEX_2975c	NC_016804.1	3245628	3246365	R	putative methyltransferase	complement(3245628..3246365)	Mycobacterium bovis BCG str. Mexico	11811274
YP_005172430.1	CDS	BCGMEX_2976c	NC_016804.1	3246480	3246830	R	hypothetical protein	complement(3246480..3246830)	Mycobacterium bovis BCG str. Mexico	11811275
YP_005172431.1	CDS	BCGMEX_2977	NC_016804.1	3246810	3247199	D	putative transposase	3246810..3247199	Mycobacterium bovis BCG str. Mexico	11811276
YP_005172432.1	CDS	BCGMEX_2978c	NC_016804.1	3247300	3248649	R	putative glycosyl transferase	complement(3247300..3248649)	Mycobacterium bovis BCG str. Mexico	11811277
YP_005172433.1	CDS	BCGMEX_2979	NC_016804.1	3248763	3249983	D	putative integral membrane protein	3248763..3249983	Mycobacterium bovis BCG str. Mexico	11811278
YP_005172434.1	CDS	purU	NC_016804.1	3250056	3250988	D	Formyltetrahydrofolate deformylase	3250056..3250988	Mycobacterium bovis BCG str. Mexico	11811279
YP_005172435.1	CDS	coaD	NC_016804.1	3251857	3252342	R	phosphopantetheine adenylyltransferase	complement(3251857..3252342)	Mycobacterium bovis BCG str. Mexico	11811280
YP_005172436.1	CDS	BCGMEX_2982c	NC_016804.1	3252428	3252994	R	methyltransferase	complement(3252428..3252994)	Mycobacterium bovis BCG str. Mexico	11811281
YP_005172437.1	CDS	pca	NC_016804.1	3253190	3256573	R	pyruvate carboxylase	complement(3253190..3256573)	Mycobacterium bovis BCG str. Mexico	11811282
YP_005172438.1	CDS	BCGMEX_2984c	NC_016804.1	3256598	3257230	R	putative integral membrane protein	complement(3256598..3257230)	Mycobacterium bovis BCG str. Mexico	11811283
YP_005172439.1	CDS	BCGMEX_2985c	NC_016804.1	3257236	3258003	R	hypothetical protein	complement(3257236..3258003)	Mycobacterium bovis BCG str. Mexico	11811284
YP_005172440.1	CDS	lipN	NC_016804.1	3258100	3259230	R	putative esterase/lipase	complement(3258100..3259230)	Mycobacterium bovis BCG str. Mexico	11811285
YP_005172441.1	CDS	BCGMEX_2987	NC_016804.1	3259461	3259631	D	hypothetical protein	3259461..3259631	Mycobacterium bovis BCG str. Mexico	11811286
YP_005172442.1	CDS	BCGMEX_2988	NC_016804.1	3259628	3260476	D	Differs from Rv2971 by 1aa, H152N in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative oxidoreductase	3259628..3260476	Mycobacterium bovis BCG str. Mexico	11811287
YP_005172443.1	CDS	BCGMEX_2989c	NC_016804.1	3260550	3261263	R	hypothetical protein	complement(3260550..3261263)	Mycobacterium bovis BCG str. Mexico	11811288
YP_005172444.1	CDS	recG	NC_016804.1	3261260	3263473	R	Differs from Rv2973c and Mb2998c by 1aa, A6D in BCG Pasteur, BCG Tokyo and BCG Mexico; ATP-dependent DNA helicase	complement(3261260..3263473)	Mycobacterium bovis BCG str. Mexico	11811289
YP_005172445.1	CDS	BCGMEX_2991c	NC_016804.1	3263476	3265137	R	In Mycobacterium tuberculosis H37Rv, Rv2975c and Rv2974c exist as 2 genes. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a 2 bp deletion results in a single product that is more similar to Rv2974c; hypothetical protein	complement(3263476..3265137)	Mycobacterium bovis BCG str. Mexico	11811290
YP_005172446.1	CDS	BCGMEX_2992	NC_016804.1	3265379	3265573	D	50S ribosomal protein L28	3265379..3265573	Mycobacterium bovis BCG str. Mexico	11811291
YP_005172447.1	CDS	ung	NC_016804.1	3265596	3266279	R	uracil-DNA glycosylase	complement(3265596..3266279)	Mycobacterium bovis BCG str. Mexico	11811292
YP_005172448.1	CDS	thiL	NC_016804.1	3266312	3267313	R	Thiamine-monophosphate kinase	complement(3266312..3267313)	Mycobacterium bovis BCG str. Mexico	11811293
YP_005172449.1	CDS	BCGMEX_2995c	NC_016804.1	3267310	3268689	R	putative transposase	complement(3267310..3268689)	Mycobacterium bovis BCG str. Mexico	11811294
YP_005172450.1	CDS	BCGMEX_2996c	NC_016804.1	3268689	3269273	R	Differs from Rv2979c by 3aa, R14P, A79T, G151D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative resolvase	complement(3268689..3269273)	Mycobacterium bovis BCG str. Mexico	11811295
YP_005172451.1	CDS	BCGMEX_2997	NC_016804.1	3269485	3270030	D	putative secreted protein	3269485..3270030	Mycobacterium bovis BCG str. Mexico	11811296
YP_005172452.1	CDS	ddl	NC_016804.1	3270675	3271796	R	In Mycobacterium bovis, a 9 bp deletion leads to a shorter product compared to its homolog in Mycobacterium bovis BCG Pasteur, BCG Mexico and in Mycobacterium tuberculosis strain H37Rv (370 aa versus 373 aa). Differs from Rv2981c by 1aa, A365T, and from Mb3005c by insertion of 3aa, pos:7-9; D-alanine--D-alanine ligase	complement(3270675..3271796)	Mycobacterium bovis BCG str. Mexico	11811297
YP_005172453.1	CDS	gpsA	NC_016804.1	3271874	3272878	R	Differs from Rv2982c by 1aa, A133P in BCG Pasteur, BCG Tokyo and  BCG Mexico; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	complement(3271874..3272878)	Mycobacterium bovis BCG str. Mexico	11811298
YP_005172454.1	CDS	BCGMEX_3000	NC_016804.1	3272997	3273641	D	hypothetical protein	3272997..3273641	Mycobacterium bovis BCG str. Mexico	11811299
YP_005172455.1	CDS	ppk	NC_016804.1	3273733	3275961	D	polyphosphate kinase	3273733..3275961	Mycobacterium bovis BCG str. Mexico	11811300
YP_005172456.1	CDS	mutT1	NC_016804.1	3276044	3276997	D	putative hydrolase	3276044..3276997	Mycobacterium bovis BCG str. Mexico	11811301
YP_005172457.1	CDS	hupB	NC_016804.1	3277055	3277672	R	Differs from Rv2986c and Mb3010c by 9aa deletion at position 137 in BCG Pasteur, BCG Tokyo and BCG Mexico; putative DNA-binding protein HU-like protein	complement(3277055..3277672)	Mycobacterium bovis BCG str. Mexico	11811302
YP_005172458.1	CDS	leuD	NC_016804.1	3277885	3278481	R	3-isopropylmalate dehydratase small subunit	complement(3277885..3278481)	Mycobacterium bovis BCG str. Mexico	11811303
YP_005172459.1	CDS	leuC	NC_016804.1	3278506	3279927	R	Differs from Rv2988c by 1aa, E343D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; 3-isopropylmalate dehydratase large subunit	complement(3278506..3279927)	Mycobacterium bovis BCG str. Mexico	11811304
YP_005172460.1	CDS	BCGMEX_3006	NC_016804.1	3279999	3280700	D	putative transcriptional regulatory protein	3279999..3280700	Mycobacterium bovis BCG str. Mexico	11811305
YP_005172461.1	CDS	BCGMEX_3007c	NC_016804.1	3280711	3281571	R	Differs from Mb3014c by 1aa, A217E in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(3280711..3281571)	Mycobacterium bovis BCG str. Mexico	11811306
YP_005172462.1	CDS	BCGMEX_3008	NC_016804.1	3281834	3282325	D	Differs from Rv2991 by 1aa, T93A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3281834..3282325	Mycobacterium bovis BCG str. Mexico	11811307
YP_005172463.1	CDS	gltx	NC_016804.1	3282657	3284129	R	Differs from Rv2992c and Mb3016c by 1aa, A420V in BCG Pasteur, BCG Tokyo and BCG Mexico; glutamyl-tRNA synthetase	complement(3282657..3284129)	Mycobacterium bovis BCG str. Mexico	11811310
YP_005172464.1	CDS	BCGMEX_3010c	NC_016804.1	3284126	3284845	R	putative 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase	complement(3284126..3284845)	Mycobacterium bovis BCG str. Mexico	11811311
YP_005172465.1	CDS	BCGMEX_3011	NC_016804.1	3285121	3286458	D	putative integral membrane protein	3285121..3286458	Mycobacterium bovis BCG str. Mexico	11811312
YP_005172466.1	CDS	leuB	NC_016804.1	3286310	3287320	R	Differs from Rv2995c by 1aa L185F in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; 3-isopropylmalate dehydrogenase	complement(3286310..3287320)	Mycobacterium bovis BCG str. Mexico	11811313
YP_005172467.1	CDS	serA1	NC_016804.1	3287335	3288921	R	D-3-phosphoglycerate dehydrogenase	complement(3287335..3288921)	Mycobacterium bovis BCG str. Mexico	11811314
YP_005172468.1	CDS	BCGMEX_3014	NC_016804.1	3288951	3290393	D	Differs from Rv2997 by 1aa S108C in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; dehydrogenase	3288951..3290393	Mycobacterium bovis BCG str. Mexico	11811315
YP_005172469.1	CDS	BCGMEX_3015	NC_016804.1	3290667	3291128	D	hypothetical protein	3290667..3291128	Mycobacterium bovis BCG str. Mexico	11811316
YP_005172470.1	CDS	BCGMEX_3016c	NC_016804.1	3291077	3291280	R	hypothetical protein	complement(3291077..3291280)	Mycobacterium bovis BCG str. Mexico	11811317
YP_005172471.1	CDS	lppY	NC_016804.1	3291454	3292419	D	Differs from Rv2999 by 1aa, L212M in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative lipoprotein	3291454..3292419	Mycobacterium bovis BCG str. Mexico	11811318
YP_005172472.1	CDS	BCGMEX_3018	NC_016804.1	3292464	3293123	D	putative transmembrane protein	3292464..3293123	Mycobacterium bovis BCG str. Mexico	11811319
YP_005172473.1	CDS	ilvC	NC_016804.1	3293437	3294438	R	ketol-acid reductoisomerase	complement(3293437..3294438)	Mycobacterium bovis BCG str. Mexico	11811320
YP_005172474.1	CDS	ilvN	NC_016804.1	3294476	3294982	R	Differs from Rv3002c and Mb3027c by 1aa, I50T in BCG Pasteur; acetolactate synthase small subunit	complement(3294476..3294982)	Mycobacterium bovis BCG str. Mexico	11811321
YP_005172475.1	CDS	ilvB1	NC_016804.1	3294982	3296838	R	acetolactate synthase	complement(3294982..3296838)	Mycobacterium bovis BCG str. Mexico	11811322
YP_005172476.1	CDS	cfp6	NC_016804.1	3297200	3297538	D	Low molecular weight protein antigen 6	3297200..3297538	Mycobacterium bovis BCG str. Mexico	11811323
YP_005172477.1	CDS	BCGMEX_3023c	NC_016804.1	3297545	3298384	R	hypothetical protein	complement(3297545..3298384)	Mycobacterium bovis BCG str. Mexico	11811324
YP_005172478.1	CDS	lppZ	NC_016804.1	3298561	3299682	D	Differs from Rv3006 by 1aa, D219G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative lipoprotein	3298561..3299682	Mycobacterium bovis BCG str. Mexico	11811325
YP_005172479.1	CDS	BCGMEX_3025c	NC_016804.1	3299688	3300302	R	putative oxidoreductase	complement(3299688..3300302)	Mycobacterium bovis BCG str. Mexico	11811326
YP_005172480.1	CDS	BCGMEX_3026	NC_016804.1	3300496	3301119	D	hypothetical protein	3300496..3301119	Mycobacterium bovis BCG str. Mexico	11811327
YP_005172481.1	CDS	gatB	NC_016804.1	3301116	3302645	R	aspartyl/glutamyl-tRNA amidotransferase subunit B	complement(3301116..3302645)	Mycobacterium bovis BCG str. Mexico	11811328
YP_005172482.1	CDS	pfkA	NC_016804.1	3302675	3303706	R	6-phosphofructokinase	complement(3302675..3303706)	Mycobacterium bovis BCG str. Mexico	11811329
YP_005172483.1	CDS	gatA	NC_016804.1	3303802	3305286	R	Differs from Rv3011c by 3aa, T25A, V59I, L420M in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; aspartyl-tRNA amidotransferase subunit A	complement(3303802..3305286)	Mycobacterium bovis BCG str. Mexico	11811330
YP_005172484.1	CDS	gatC	NC_016804.1	3305283	3305582	R	aspartyl/glutamyl-tRNA amidotransferase subunit C	complement(3305283..3305582)	Mycobacterium bovis BCG str. Mexico	11811331
YP_005172485.1	CDS	BCGMEX_3031	NC_016804.1	3305667	3306323	D	hypothetical protein	3305667..3306323	Mycobacterium bovis BCG str. Mexico	11811332
YP_005172486.1	CDS	ligA	NC_016804.1	3306397	3308472	R	DNA ligase	complement(3306397..3308472)	Mycobacterium bovis BCG str. Mexico	11811333
YP_005172487.1	CDS	BCGMEX_3033c	NC_016804.1	3308503	3309516	R	hypothetical protein	complement(3308503..3309516)	Mycobacterium bovis BCG str. Mexico	11811334
YP_005172488.1	CDS	lpqA	NC_016804.1	3309610	3310239	D	putative lipoprotein	3309610..3310239	Mycobacterium bovis BCG str. Mexico	11811335
YP_005172489.1	CDS	esxQ	NC_016804.1	3310342	3310704	R	putative EsaT-6 like protein 8	complement(3310342..3310704)	Mycobacterium bovis BCG str. Mexico	11811336
YP_005172490.1	CDS	PPE46	NC_016804.1	3310791	3312104	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a 56 bp deletion leads to a products lightly different at the N-terminus part compared to its homolog in Mycobacterium tuberculosis strain H37Rv (434 aa versus 437 aa). Differs from Rv3018c by 1aa, A53V, and Mb3043c by 1aa, L328V in BCG Pasteur, BCG Tokyo and BCG Mexico; PPE family protein	complement(3310791..3312104)	Mycobacterium bovis BCG str. Mexico	11811337
YP_005172491.1	CDS	PE27A	NC_016804.1	3312125	3312211	R	PE family protein	complement(3312125..3312211)	Mycobacterium bovis BCG str. Mexico	11811338
YP_005172492.1	CDS	BCGMEX_3038c	NC_016804.1	3312291	3312458	R	hypothetical protein	complement(3312291..3312458)	Mycobacterium bovis BCG str. Mexico	11811339
YP_005172493.1	CDS	esxR	NC_016804.1	3312507	3312797	R	putative secreted ESAT-6 like protein 9	complement(3312507..3312797)	Mycobacterium bovis BCG str. Mexico	11811340
YP_005172494.1	CDS	esxS	NC_016804.1	3312832	3313125	R	PE family protein	complement(3312832..3313125)	Mycobacterium bovis BCG str. Mexico	11811341
YP_005172495.1	CDS	PPE47	NC_016804.1	3313172	3314479	R	In Mycobacterium tuberculosis H37Rv, PPE47 and PPE48 exist as 2 separate genes. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a single base insertion leads to a single product.; PPE family protein	complement(3313172..3314479)	Mycobacterium bovis BCG str. Mexico	11811342
YP_005172496.1	CDS	PE29	NC_016804.1	3314476	3314790	R	PE family protein	complement(3314476..3314790)	Mycobacterium bovis BCG str. Mexico	11811343
YP_005172497.1	CDS	BCGMEX_3043c	NC_016804.1	3315172	3316419	R	Differs from Rv3023c by 1aa T9A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transposase	complement(3315172..3316419)	Mycobacterium bovis BCG str. Mexico	11811344
YP_005172498.1	CDS	trmU	NC_016804.1	3316582	3317685	R	tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase	complement(3316582..3317685)	Mycobacterium bovis BCG str. Mexico	11811345
YP_005172499.1	CDS	iscS	NC_016804.1	3317682	3318863	R	putative cysteine desulfurase	complement(3317682..3318863)	Mycobacterium bovis BCG str. Mexico	11811346
YP_005172500.1	CDS	BCGMEX_3046c	NC_016804.1	3318960	3319874	R	hypothetical protein	complement(3318960..3319874)	Mycobacterium bovis BCG str. Mexico	11811347
YP_005172501.1	CDS	BCGMEX_3047c	NC_016804.1	3319871	3320611	R	hypothetical protein	complement(3319871..3320611)	Mycobacterium bovis BCG str. Mexico	11811348
YP_005172502.1	CDS	fixB	NC_016804.1	3320872	3321828	R	Differs from Rv3028c by 1aa, V312A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; electron transfer flavoprotein subunit alpha	complement(3320872..3321828)	Mycobacterium bovis BCG str. Mexico	11811349
YP_005172503.1	CDS	fixA	NC_016804.1	3321867	3322667	R	electron transfer flavoprotein subunit beta	complement(3321867..3322667)	Mycobacterium bovis BCG str. Mexico	11811350
YP_005172504.1	CDS	BCGMEX_3050	NC_016804.1	3322898	3323722	D	hypothetical protein	3322898..3323722	Mycobacterium bovis BCG str. Mexico	11811351
YP_005172505.1	CDS	BCGMEX_3051	NC_016804.1	3323719	3325299	D	hypothetical protein	3323719..3325299	Mycobacterium bovis BCG str. Mexico	11811352
YP_005172506.1	CDS	BCGMEX_3052	NC_016804.1	3325331	3326575	D	Differs from Rv3032 and Mb3058 by 1aa, P380Q in BCG Pasteur, BCG Tokyo and BCG Mexico; putative transferase	3325331..3326575	Mycobacterium bovis BCG str. Mexico	11811353
YP_005172507.1	CDS	BCGMEX_3053	NC_016804.1	3326609	3326998	D	hypothetical protein	3326609..3326998	Mycobacterium bovis BCG str. Mexico	11811354
YP_005172508.1	CDS	BCGMEX_3054	NC_016804.1	3327177	3327725	D	hypothetical protein	3327177..3327725	Mycobacterium bovis BCG str. Mexico	11811355
YP_005172509.1	CDS	BCGMEX_3055c	NC_016804.1	3327816	3328718	R	putative transferase	complement(3327816..3328718)	Mycobacterium bovis BCG str. Mexico	11811356
YP_005172510.1	CDS	BCGMEX_3056	NC_016804.1	3329176	3330258	D	hypothetical protein	3329176..3330258	Mycobacterium bovis BCG str. Mexico	11811357
YP_005172511.1	CDS	BCGMEX_3057c	NC_016804.1	3330255	3330938	R	Differs from Mb3062c by 1aa, Q63R in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative secreted protein	complement(3330255..3330938)	Mycobacterium bovis BCG str. Mexico	11811358
YP_005172512.1	CDS	BCGMEX_3058c	NC_016804.1	3331011	3332087	R	Differs from Rv3037c by 1aa, A7D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(3331011..3332087)	Mycobacterium bovis BCG str. Mexico	11811359
YP_005172513.1	CDS	BCGMEX_3059c	NC_016804.1	3332222	3333205	R	hypothetical protein	complement(3332222..3333205)	Mycobacterium bovis BCG str. Mexico	11811360
YP_005172514.1	CDS	echA17	NC_016804.1	3333216	3333980	R	Enoyl-CoA hydratase	complement(3333216..3333980)	Mycobacterium bovis BCG str. Mexico	11811361
YP_005172515.1	CDS	BCGMEX_3061c	NC_016804.1	3333989	3334855	R	hypothetical protein	complement(3333989..3334855)	Mycobacterium bovis BCG str. Mexico	11811362
YP_005172516.1	CDS	BCGMEX_3062c	NC_016804.1	3334852	3335715	R	ATP-binding protein, ABC transporter	complement(3334852..3335715)	Mycobacterium bovis BCG str. Mexico	11811363
YP_005172517.1	CDS	serB2	NC_016804.1	3335730	3336959	R	Differs from Rv3042c by 2aa, S70A, E116G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; phosphoserine phosphatase	complement(3335730..3336959)	Mycobacterium bovis BCG str. Mexico	11811364
YP_005172518.1	CDS	ctaD	NC_016804.1	3336997	3338718	R	putative cytochrome c oxidase polypeptide I	complement(3336997..3338718)	Mycobacterium bovis BCG str. Mexico	11811365
YP_005172519.1	CDS	fecB	NC_016804.1	3338933	3340012	D	putative FeIII-dicitrate-binding periplasmic lipoprotein	3338933..3340012	Mycobacterium bovis BCG str. Mexico	11811366
YP_005172520.1	CDS	adhC	NC_016804.1	3340082	3341122	D	NADP-dependent alcohol dehydrogenase C	3340082..3341122	Mycobacterium bovis BCG str. Mexico	11811367
YP_005172521.1	CDS	BCGMEX_3067c	NC_016804.1	3341111	3341485	R	hypothetical protein	complement(3341111..3341485)	Mycobacterium bovis BCG str. Mexico	11811368
YP_005172522.1	CDS	BCGMEX_3068c	NC_016804.1	3341819	3342103	R	hypothetical protein	complement(3341819..3342103)	Mycobacterium bovis BCG str. Mexico	11811369
YP_005172523.1	CDS	nrdF2	NC_016804.1	3342201	3343175	R	ribonucleoside-diphosphate reductase subunit beta	complement(3342201..3343175)	Mycobacterium bovis BCG str. Mexico	11811370
YP_005172524.1	CDS	BCGMEX_3070c	NC_016804.1	3343306	3344880	R	putative monooxygenase	complement(3343306..3344880)	Mycobacterium bovis BCG str. Mexico	11811371
YP_005172525.1	CDS	BCGMEX_3071c	NC_016804.1	3345014	3345754	R	putative transcriptional regulatory protein, probably AsnC-family	complement(3345014..3345754)	Mycobacterium bovis BCG str. Mexico	11811372
YP_005172526.1	CDS	nrdE	NC_016804.1	3345882	3347963	R	ribonucleoside-diphosphate reductase subunit alpha	complement(3345882..3347963)	Mycobacterium bovis BCG str. Mexico	11811373
YP_005172527.1	CDS	nrdI	NC_016804.1	3348029	3348481	R	protein nrdI	complement(3348029..3348481)	Mycobacterium bovis BCG str. Mexico	11811374
YP_005172528.1	CDS	nrdH	NC_016804.1	3348516	3348755	R	putative glutaredoxin electron transport component of nrdEF	complement(3348516..3348755)	Mycobacterium bovis BCG str. Mexico	11811375
YP_005172529.1	CDS	BCGMEX_3075c	NC_016804.1	3348733	3349101	R	hypothetical protein	complement(3348733..3349101)	Mycobacterium bovis BCG str. Mexico	11811376
YP_005172530.1	CDS	BCGMEX_3076c	NC_016804.1	3349218	3349772	R	hypothetical protein	complement(3349218..3349772)	Mycobacterium bovis BCG str. Mexico	11811377
YP_005172531.1	CDS	BCGMEX_3077	NC_016804.1	3349864	3350478	D	putative transcriptional regulatory protein, TetR family	3349864..3350478	Mycobacterium bovis BCG str. Mexico	11811378
YP_005172532.1	CDS	dinP	NC_016804.1	3350488	3351528	D	DNA polymerase IV	3350488..3351528	Mycobacterium bovis BCG str. Mexico	11811379
YP_005172533.1	CDS	BCGMEX_3079c	NC_016804.1	3351582	3352445	R	short-chain dehydrogenase	complement(3351582..3352445)	Mycobacterium bovis BCG str. Mexico	11811380
YP_005172534.1	CDS	BCGMEX_3080c	NC_016804.1	3352509	3353159	R	putative transcriptional regulatory protein, TetR family	complement(3352509..3353159)	Mycobacterium bovis BCG str. Mexico	11811381
YP_005172535.1	CDS	cyp136	NC_016804.1	3353275	3354753	D	Differs from Mb3085 by 1aa, E44K and Rv3059 by 2aa, E44K, G445D in BCG Pasteur, BCG Tokyo and BCG Mexico; putative cytochrome P450 136	3353275..3354753	Mycobacterium bovis BCG str. Mexico	11811382
YP_005172536.1	CDS	BCGMEX_3082c	NC_016804.1	3355524	3356996	R	putative transcriptional regulatory protein, GntR family	complement(3355524..3356996)	Mycobacterium bovis BCG str. Mexico	11811383
YP_005172537.1	CDS	fadE22	NC_016804.1	3357113	3359278	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium tuberculosis strain H37Rv, fadE22 exists as a single gene. In Mycobacterium bovis, a frameshift due to a single base insertion splits fadE22 into 2 parts, fadE22a and fadE22b. Differs from Mb3087c and from Rv3061c by 2aa, E488K, C497S in BCG Pasteur, BCG Tokyo and BCG Mexico; acyl-CoA dehydrogenase, short-chain specific	complement(3357113..3359278)	Mycobacterium bovis BCG str. Mexico	11811384
YP_005172538.1	CDS	ligB	NC_016804.1	3359435	3360958	D	Differs from Rv3062 by 1aa, S91P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; ATP-dependent DNA ligase	3359435..3360958	Mycobacterium bovis BCG str. Mexico	11811385
YP_005172539.1	CDS	cstA	NC_016804.1	3361094	3363370	D	Differs from Rv3063 by 3aa, C402G, S559R, P600L in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative carbon starvation protein A	3361094..3363370	Mycobacterium bovis BCG str. Mexico	11811386
YP_005172540.1	CDS	BCGMEX_3086c	NC_016804.1	3363676	3364101	R	putative integral membrane protein	complement(3363676..3364101)	Mycobacterium bovis BCG str. Mexico	11811387
YP_005172541.1	CDS	mmr	NC_016804.1	3364238	3364561	D	multidrug resistance protein	3364238..3364561	Mycobacterium bovis BCG str. Mexico	11811388
YP_005172542.1	CDS	BCGMEX_3088	NC_016804.1	3364558	3365166	D	putative transcriptional regulatory protein	3364558..3365166	Mycobacterium bovis BCG str. Mexico	11811389
YP_005172543.1	CDS	BCGMEX_3089	NC_016804.1	3365279	3365689	D	Differs from Rv3067 and Mb3094 by 1aa A3T in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3365279..3365689	Mycobacterium bovis BCG str. Mexico	11811390
YP_005172544.1	CDS	pgmA	NC_016804.1	3365830	3367473	R	phosphoglucomutase	complement(3365830..3367473)	Mycobacterium bovis BCG str. Mexico	11811392
YP_005172545.1	CDS	crcB1	NC_016804.1	3367543	3367941	D	protein crcB-like protein 1	3367543..3367941	Mycobacterium bovis BCG str. Mexico	11811393
YP_005172546.1	CDS	crcB2	NC_016804.1	3367938	3368318	D	protein crcB-like protein 2	3367938..3368318	Mycobacterium bovis BCG str. Mexico	11811394
YP_005172547.1	CDS	BCGMEX_3093	NC_016804.1	3368315	3369424	D	hypothetical protein	3368315..3369424	Mycobacterium bovis BCG str. Mexico	11811395
YP_005172548.1	CDS	BCGMEX_3094c	NC_016804.1	3369649	3370173	R	hypothetical protein	complement(3369649..3370173)	Mycobacterium bovis BCG str. Mexico	11811396
YP_005172549.1	CDS	BCGMEX_3095c	NC_016804.1	3370180	3370536	R	hypothetical protein	complement(3370180..3370536)	Mycobacterium bovis BCG str. Mexico	11811397
YP_005172550.1	CDS	BCGMEX_3096	NC_016804.1	3370630	3371904	D	hypothetical protein	3370630..3371904	Mycobacterium bovis BCG str. Mexico	11811398
YP_005172551.1	CDS	BCGMEX_3097c	NC_016804.1	3371901	3372824	R	hypothetical protein	complement(3371901..3372824)	Mycobacterium bovis BCG str. Mexico	11811399
YP_005172552.1	CDS	BCGMEX_3098	NC_016804.1	3372923	3373399	D	hypothetical protein	3372923..3373399	Mycobacterium bovis BCG str. Mexico	11811401
YP_005172553.1	CDS	BCGMEX_3099	NC_016804.1	3373392	3375203	D	Differs from Rv3077 by 1aa R311G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative hydrolase	3373392..3375203	Mycobacterium bovis BCG str. Mexico	11811402
YP_005172554.1	CDS	hab	NC_016804.1	3375204	3375605	D	putative hydroxylaminobenzene mutase	3375204..3375605	Mycobacterium bovis BCG str. Mexico	11811403
YP_005172555.1	CDS	BCGMEX_3101c	NC_016804.1	3375621	3376448	R	hypothetical protein	complement(3375621..3376448)	Mycobacterium bovis BCG str. Mexico	11811404
YP_005172556.1	CDS	pknK	NC_016804.1	3376507	3379839	R	Differs from Rv3080c by 1aa, V217A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative serine/threonine-protein kinase	complement(3376507..3379839)	Mycobacterium bovis BCG str. Mexico	11811405
YP_005172557.1	CDS	BCGMEX_3103	NC_016804.1	3379891	3381129	D	Differs from Rv3081 and Mb3108 by 1aa, A108V in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3379891..3381129	Mycobacterium bovis BCG str. Mexico	11811406
YP_005172558.1	CDS	virS	NC_016804.1	3381255	3382277	R	Differs from Rv3082c by 1aa, C322R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative virulence-regulating 38 kDa protein	complement(3381255..3382277)	Mycobacterium bovis BCG str. Mexico	11811407
YP_005172559.1	CDS	BCGMEX_3105	NC_016804.1	3382355	3383842	D	Differs from Mb3110 by 1aa, S81I and from Rv3083 by 2aa, S81I, I94V in BCG Pasteur, BCG Tokyo and BCG Mexico; putative monooxygenase	3382355..3383842	Mycobacterium bovis BCG str. Mexico	11811408
YP_005172560.1	CDS	lipR	NC_016804.1	3383848	3384774	D	Differs from Rv3084 and Mb3111 by 1aa, G276S in BCG Pasteur, BCG Tokyo and BCG Mexico; putative acetyl-hydrolase/esterase	3383848..3384774	Mycobacterium bovis BCG str. Mexico	11811409
YP_005172561.1	CDS	BCGMEX_3107	NC_016804.1	3384771	3385601	D	putative short-chain dehydrogenase/reductase family	3384771..3385601	Mycobacterium bovis BCG str. Mexico	11811410
YP_005172562.1	CDS	adhD	NC_016804.1	3385632	3386738	D	putative zinc-type alcohol dehydrogenase	3385632..3386738	Mycobacterium bovis BCG str. Mexico	11811411
YP_005172563.1	CDS	BCGMEX_3109	NC_016804.1	3386776	3388194	D	Differs from Rv3087 by 1aa, V447L, and from Mb3114 by 1aa, T158A in BCG Pasteur, BCG Tokyo and BCG Mexico; putative diacylglycerol O-acyltransferase	3386776..3388194	Mycobacterium bovis BCG str. Mexico	11811412
YP_005172564.1	CDS	tgs4	NC_016804.1	3388191	3389615	D	putative diacylglycerol O-acyltransferase	3388191..3389615	Mycobacterium bovis BCG str. Mexico	11811413
YP_005172565.1	CDS	fadD13	NC_016804.1	3389612	3391123	D	putative chain-fatty-acid-CoA ligase	3389612..3391123	Mycobacterium bovis BCG str. Mexico	11811414
YP_005172566.1	CDS	BCGMEX_3112	NC_016804.1	3392062	3392949	D	hypothetical protein	3392062..3392949	Mycobacterium bovis BCG str. Mexico	11811415
YP_005172567.1	CDS	BCGMEX_3113	NC_016804.1	3392967	3394658	D	hypothetical protein	3392967..3394658	Mycobacterium bovis BCG str. Mexico	11811416
YP_005172568.1	CDS	BCGMEX_3114c	NC_016804.1	3394665	3395585	R	Differs from Mb3119c by 1 aa, I237M in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative integral membrane protein	complement(3394665..3395585)	Mycobacterium bovis BCG str. Mexico	11811417
YP_005172569.1	CDS	BCGMEX_3115c	NC_016804.1	3395611	3396615	R	Differs from Rv3093c by 1aa W210C in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; putative oxidoreductase	complement(3395611..3396615)	Mycobacterium bovis BCG str. Mexico	11811418
YP_005172570.1	CDS	BCGMEX_3116c	NC_016804.1	3396612	3397742	R	hypothetical protein	complement(3396612..3397742)	Mycobacterium bovis BCG str. Mexico	11811419
YP_005172571.1	CDS	BCGMEX_3117	NC_016804.1	3397824	3398300	D	transcriptional regulatory protein	3397824..3398300	Mycobacterium bovis BCG str. Mexico	11811420
YP_005172572.1	CDS	BCGMEX_3118	NC_016804.1	3398398	3399537	D	Differs from Rv3097 by 1aa G28E in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3398398..3399537	Mycobacterium bovis BCG str. Mexico	11811421
YP_005172573.1	CDS	PE_PGRS63	NC_016804.1	3399629	3400942	R	Differs from Rv3097c by 1aa A58G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; PE-PGRS family protein	complement(3399629..3400942)	Mycobacterium bovis BCG str. Mexico	11811422
YP_005172574.1	CDS	BCGMEX_3120c	NC_016804.1	3401061	3401513	R	Differs from Rv3098c by 1aa E117D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(3401061..3401513)	Mycobacterium bovis BCG str. Mexico	11811423
YP_005172575.1	CDS	BCGMEX_3121c	NC_016804.1	3402264	3403115	R	hypothetical protein	complement(3402264..3403115)	Mycobacterium bovis BCG str. Mexico	11811425
YP_005172576.1	CDS	smpB	NC_016804.1	3403152	3403634	R	SsrA-binding protein	complement(3403152..3403634)	Mycobacterium bovis BCG str. Mexico	11811426
YP_005172577.1	CDS	ftsX	NC_016804.1	3403637	3404530	R	Differs from Rv3101c by 1aa, S171N in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; cell division protein	complement(3403637..3404530)	Mycobacterium bovis BCG str. Mexico	11811427
YP_005172578.1	CDS	ftsE	NC_016804.1	3404531	3405220	R	cell division ATP-binding protein	complement(3404531..3405220)	Mycobacterium bovis BCG str. Mexico	11811428
YP_005172579.1	CDS	BCGMEX_3125c	NC_016804.1	3405264	3405701	R	hypothetical protein	complement(3405264..3405701)	Mycobacterium bovis BCG str. Mexico	11811429
YP_005172580.1	CDS	BCGMEX_3126c	NC_016804.1	3405703	3406629	R	putative transmembrane protein	complement(3405703..3406629)	Mycobacterium bovis BCG str. Mexico	11811430
YP_005172581.1	CDS	prfB	NC_016804.1	3406619	3407755	R	peptide chain release factor 2	complement(3406619..3407755)	Mycobacterium bovis BCG str. Mexico	11811431
YP_005172582.1	CDS	fprA	NC_016804.1	3407859	3409229	D	Differs from Rv3106 by 2aa, I141V, D385N in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; NADPH-ferredoxin reductase	3407859..3409229	Mycobacterium bovis BCG str. Mexico	11811432
YP_005172583.1	CDS	agpS	NC_016804.1	3409230	3410813	R	alkyldihydroxyacetonephosphate synthase	complement(3409230..3410813)	Mycobacterium bovis BCG str. Mexico	11811434
YP_005172584.1	CDS	BCGMEX_3130	NC_016804.1	3410912	3411352	D	Differs from Mb3135 by 1aa I145V in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3410912..3411352	Mycobacterium bovis BCG str. Mexico	11811435
YP_005172585.1	CDS	moaA1	NC_016804.1	3411501	3412580	D	Differs from Mb3136 by 1aa, T324A in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; molybdenum cofactor biosynthesis protein A	3411501..3412580	Mycobacterium bovis BCG str. Mexico	11811436
YP_005172586.1	CDS	moaB1	NC_016804.1	3412631	3413026	D	Pterin-4-alpha-carbinolamine dehydratase	3412631..3413026	Mycobacterium bovis BCG str. Mexico	11811437
YP_005172587.1	CDS	moaC	NC_016804.1	3413023	3413535	D	molybdenum cofactor biosynthesis protein C	3413023..3413535	Mycobacterium bovis BCG str. Mexico	11811438
YP_005172588.1	CDS	moaD1	NC_016804.1	3413552	3413803	D	molybdenum cofactor biosynthesis protein D	3413552..3413803	Mycobacterium bovis BCG str. Mexico	11811439
YP_005172589.1	CDS	BCGMEX_3135	NC_016804.1	3413925	3414593	D	Differs from Rv3113 by 3aa, C11W, E134G, R191L in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative phosphatase	3413925..3414593	Mycobacterium bovis BCG str. Mexico	11811440
YP_005172590.1	CDS	BCGMEX_3136	NC_016804.1	3414610	3415140	D	Differs from Rv3114 by 1aa, P11S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3414610..3415140	Mycobacterium bovis BCG str. Mexico	11811441
YP_005172591.1	CDS	BCGMEX_3137	NC_016804.1	3415302	3416549	D	putative transposase	3415302..3416549	Mycobacterium bovis BCG str. Mexico	11811442
YP_005172592.1	CDS	moeB2	NC_016804.1	3416627	3417796	D	putative molybdenum cofactor biosynthesis protein	3416627..3417796	Mycobacterium bovis BCG str. Mexico	11811443
YP_005172593.1	CDS	cysA3	NC_016804.1	3417825	3418787	D	In Mycobacterium bovis BCG Pasteur, BCG Tokio, BCG Mexico and Mycobacterium bovis, a large deletion of 2775 bp (RD12) leads to the loss of the COOH part of cysA3, the following CDSs, sseC1, moaE1, Rv3120 and a large part of cyp141 except the COOH end, compared to the homolog in Mycobacterium tuberculosis strain H37Rv; thiosulfate sulfurtransferase	3417825..3418787	Mycobacterium bovis BCG str. Mexico	11811444
YP_005172594.1	CDS	BCGMEX_3140	NC_016804.1	3419165	3419635	D	Differs from Rv3122 by 1aa, S156R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3419165..3419635	Mycobacterium bovis BCG str. Mexico	11811445
YP_005172595.1	CDS	BCGMEX_3141	NC_016804.1	3419645	3420139	D	Differs from Rv3123 by 1aa, Q40R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3419645..3420139	Mycobacterium bovis BCG str. Mexico	11811446
YP_005172596.1	CDS	BCGMEX_3142	NC_016804.1	3420582	3421451	D	Differs from Rv3124 and Mb3147 by 1aa, G159E in BCG Pasteur, BCG Tokyo and BCG Mexico; putative transcriptional regulatory protein	3420582..3421451	Mycobacterium bovis BCG str. Mexico	11811447
YP_005172597.1	CDS	PPE49b	NC_016804.1	3421552	3421866	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, PPE49 has incurred a single base deletion in codon 272 compared to Rv3125c and Mb3148c leading to frameshift, and two products of 282 and 104 aa, compared to 391 in others; PPE family protein	complement(3421552..3421866)	Mycobacterium bovis BCG str. Mexico	11811448
YP_005172598.1	CDS	PPE49a	NC_016804.1	3421878	3422726	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, PPE49 has incurred a single base deletion in codon 272 compared to Rv3125c and Mb3148c leading to frameshift, and two products of 282 and 104 aa, compared to 391 in others. Differs from Rv3125c by 1aa, V38A; PPE family protein	complement(3421878..3422726)	Mycobacterium bovis BCG str. Mexico	11811449
YP_005172599.1	CDS	BCGMEX_3145c	NC_016804.1	3422883	3423197	R	hypothetical protein	complement(3422883..3423197)	Mycobacterium bovis BCG str. Mexico	11811450
YP_005172600.1	CDS	BCGMEX_3146	NC_016804.1	3423222	3424256	D	Differs from Rv3127 by 1aa, C95F in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3423222..3424256	Mycobacterium bovis BCG str. Mexico	11811451
YP_005172601.1	CDS	BCGMEX_3147c	NC_016804.1	3424243	3424593	R	In Mycobacterium tuberculosis strain H37Rv, Rv3128c exists as a single gene with an in-frame amber stop codon. In Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico, Rv3128c is split into 2, Mb3151c and Mb3152c; hypothetical protein	complement(3424243..3424593)	Mycobacterium bovis BCG str. Mexico	11811452
YP_005172602.1	CDS	BCGMEX_3148c	NC_016804.1	3424675	3425256	R	In Mycobacterium tuberculosis strain H37Rv, Rv3128c exists as a single gene with an in-frame amber stop codon. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, Rv3128c is split into 2 genes. Differs from Mb3152c by 1aa, V166G in BCG Pasteur and BCG Tokyo; hypothetical protein	complement(3424675..3425256)	Mycobacterium bovis BCG str. Mexico	11811453
YP_005172603.1	CDS	BCGMEX_3149	NC_016804.1	3425735	3426067	D	hypothetical protein	3425735..3426067	Mycobacterium bovis BCG str. Mexico	11811454
YP_005172604.1	CDS	BCGMEX_3150c	NC_016804.1	3426050	3427441	R	putative diacylglycerol O-acyltransferase	complement(3426050..3427441)	Mycobacterium bovis BCG str. Mexico	11811455
YP_005172605.1	CDS	BCGMEX_3151	NC_016804.1	3427626	3428624	D	putative NAD(P)H nitroreductase	3427626..3428624	Mycobacterium bovis BCG str. Mexico	11811456
YP_005172606.1	CDS	devS	NC_016804.1	3428604	3430340	R	Differs from Rv3132c by 1aa, T283I in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; two component sensor histidine kinase	complement(3428604..3430340)	Mycobacterium bovis BCG str. Mexico	11811457
YP_005172607.1	CDS	devR	NC_016804.1	3430337	3430990	R	Two component transcriptional regulatory protein	complement(3430337..3430990)	Mycobacterium bovis BCG str. Mexico	11811458
YP_005172608.1	CDS	BCGMEX_3154c	NC_016804.1	3431018	3431824	R	Universal stress protein	complement(3431018..3431824)	Mycobacterium bovis BCG str. Mexico	11811459
YP_005172609.1	CDS	PPE50	NC_016804.1	3432409	3433554	D	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a large 1337 bp insertion (I-RD08) leads to a longer product with a different COOH part compared to its homolog in Mycobacterium tuberculosis strain H37Rv (381 aa versus 132 aa). Differs from Mb3159 by 1aa, K213E in BCG Pasteur and BCG Mexico. Differ from Mb3159 by 1aa, G256E in BCG Tokyo; PPE family protein	3432409..3433554	Mycobacterium bovis BCG str. Mexico	11811460
YP_005172610.1	CDS	PPE51	NC_016804.1	3434206	3435348	D	PPE family protein	3434206..3435348	Mycobacterium bovis BCG str. Mexico	11811461
YP_005172611.1	CDS	BCGMEX_3157	NC_016804.1	3435805	3436587	D	Differs from Rv3137 by 1aa, L168P in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative monophosphatase	3435805..3436587	Mycobacterium bovis BCG str. Mexico	11811462
YP_005172612.1	CDS	pflA	NC_016804.1	3436607	3437695	D	Differs from Rv3138 by 2aa, N110S, P271T, and from Mb3162 by 2aa, F257S, P270L in BCG Pasteur, BCG Tokyo and BCG Mexico; putative pyruvate-formate lyase-activating enzyme	3436607..3437695	Mycobacterium bovis BCG str. Mexico	11811463
YP_005172613.1	CDS	fadE24	NC_016804.1	3437775	3439181	D	putative acyl-CoA dehydrogenase	3437775..3439181	Mycobacterium bovis BCG str. Mexico	11811464
YP_005172614.1	CDS	fadE23	NC_016804.1	3439202	3440407	D	putative acyl-CoA dehydrogenase	3439202..3440407	Mycobacterium bovis BCG str. Mexico	11811465
YP_005172615.1	CDS	fadB4	NC_016804.1	3440507	3441478	D	putative NADPH quinone oxidoreductase	3440507..3441478	Mycobacterium bovis BCG str. Mexico	11811466
YP_005172616.1	CDS	BCGMEX_3162c	NC_016804.1	3441530	3441958	R	Differs from Mb3166c by 1aa, H133Q in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(3441530..3441958)	Mycobacterium bovis BCG str. Mexico	11811467
YP_005172617.1	CDS	BCGMEX_3163	NC_016804.1	3442066	3442467	D	putative response regulator	3442066..3442467	Mycobacterium bovis BCG str. Mexico	11811468
YP_005172618.1	CDS	PPE52	NC_016804.1	3442500	3443729	R	Differs from Rv3144c by 1aa, G226S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; PPE family protein	complement(3442500..3443729)	Mycobacterium bovis BCG str. Mexico	11811469
YP_005172619.1	CDS	nuoA	NC_016804.1	3444094	3444480	D	NADH-quinone oxidoreductase subunit A	3444094..3444480	Mycobacterium bovis BCG str. Mexico	11811470
YP_005172620.1	CDS	nuoB	NC_016804.1	3444489	3445043	D	NADH-quinone oxidoreductase subunit B	3444489..3445043	Mycobacterium bovis BCG str. Mexico	11811471
YP_005172621.1	CDS	nuoC	NC_016804.1	3445040	3445750	D	NADH-quinone oxidoreductase subunit C	3445040..3445750	Mycobacterium bovis BCG str. Mexico	11811472
YP_005172622.1	CDS	nuoD	NC_016804.1	3445750	3447072	D	NADH-quinone oxidoreductase subunit D	3445750..3447072	Mycobacterium bovis BCG str. Mexico	11811473
YP_005172623.1	CDS	nuoE	NC_016804.1	3447069	3447827	D	NADH-quinone oxidoreductase subunit E	3447069..3447827	Mycobacterium bovis BCG str. Mexico	11811474
YP_005172624.1	CDS	nuoF	NC_016804.1	3447824	3449161	D	NADH-quinone oxidoreductase subunit F	3447824..3449161	Mycobacterium bovis BCG str. Mexico	11811475
YP_005172625.1	CDS	nuoG	NC_016804.1	3449158	3451578	D	NADH-quinone oxidoreductase subunit G	3449158..3451578	Mycobacterium bovis BCG str. Mexico	11811476
YP_005172626.1	CDS	nuoH	NC_016804.1	3451694	3452926	D	NADH-ubiquinone oxidoreductase subunit H	3451694..3452926	Mycobacterium bovis BCG str. Mexico	11811477
YP_005172627.1	CDS	nuoI	NC_016804.1	3452919	3453554	D	Differs from Rv3153 by 1aa, A180T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; NADH-quinone oxidoreductase subunit I	3452919..3453554	Mycobacterium bovis BCG str. Mexico	11811478
YP_005172628.1	CDS	nuoJ	NC_016804.1	3453551	3454339	D	NADH dehydrogenase subunit J	3453551..3454339	Mycobacterium bovis BCG str. Mexico	11811479
YP_005172629.1	CDS	nuoK	NC_016804.1	3454336	3454635	D	NADH-quinone oxidoreductase subunit K	3454336..3454635	Mycobacterium bovis BCG str. Mexico	11811480
YP_005172630.1	CDS	nuoL	NC_016804.1	3454646	3456547	D	Differs from Mb3180 by 1aa F297Y in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; NADH-quinone oxidoreductase subunit L	3454646..3456547	Mycobacterium bovis BCG str. Mexico	11811481
YP_005172631.1	CDS	nuoM	NC_016804.1	3456544	3458205	D	Differs from Rv3157 by 1aa, I476V, and from Mb3181 by 1aa, G395D in BCG Pasteur, BCG Tokyo and BCG Mexico; NADH-quinone oxidoreductase subunit M	3456544..3458205	Mycobacterium bovis BCG str. Mexico	11811482
YP_005172632.1	CDS	nuoN	NC_016804.1	3458202	3459797	D	NADH-quinone oxidoreductase subunit N	3458202..3459797	Mycobacterium bovis BCG str. Mexico	11811483
YP_005172633.1	CDS	PPE53	NC_016804.1	3459803	3461572	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, albeit a 2146 bp insertion occurs overlapping the NH2-terminal part, this leads to an Equivalent product, compared to its homolog in Mycobacterium tuberculosis strain H37Rv. Differs from Rv3159c by 2aa, deletion of A64, V87A, and from Mb3183c by 1aa, V87A in BCG Pasteur, BCG Tokyo and BCG Mexico; PPE family protein	complement(3459803..3461572)	Mycobacterium bovis BCG str. Mexico	11811484
YP_005172634.1	CDS	PPE70	NC_016804.1	3461820	3463721	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, an insertion of 2146 bp exists between PPE53 and Rv3160c compared to Mycobacterium tuberculosis strain H37Rv. This leads to an additional gene, PPE70 Equivalent to MT3248 from Mycobacterium tuberculosis strain CDC1551. Differs from Mb3184c by 1aa, addition of A64 in BCG Pasteur, BCG Tokyo and BCG Mexico; PPE family protein	complement(3461820..3463721)	Mycobacterium bovis BCG str. Mexico	11811485
YP_005172635.1	CDS	BCGMEX_3181c	NC_016804.1	3463896	3464537	R	putative transcriptional regulatory protein, TetR family	complement(3463896..3464537)	Mycobacterium bovis BCG str. Mexico	11811486
YP_005172636.1	CDS	BCGMEX_3182c	NC_016804.1	3464548	3465696	R	Differs from Rv3161c by 1aa, L62V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative dioxygenase	complement(3464548..3465696)	Mycobacterium bovis BCG str. Mexico	11811487
YP_005172637.1	CDS	BCGMEX_3183c	NC_016804.1	3465612	3466202	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a frameshift due to a single base deletion, leads to a longer product with different COOH part compared to its homolog in Mycobacterium tuberculosis strain H37Rv; putative integral membrane protein	complement(3465612..3466202)	Mycobacterium bovis BCG str. Mexico	11811488
YP_005172638.1	CDS	BCGMEX_3184c	NC_016804.1	3466199	3467470	R	Differs from Mb3188c by 1aa, D341E in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative secreted protein	complement(3466199..3467470)	Mycobacterium bovis BCG str. Mexico	11811489
YP_005172639.1	CDS	moxR3	NC_016804.1	3467500	3468462	R	Differs from Mb3189c by 1aa, E20G in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; methanol dehydrogenase transcriptional regulatory protein	complement(3467500..3468462)	Mycobacterium bovis BCG str. Mexico	11811490
YP_005172640.1	CDS	BCGMEX_3186c	NC_016804.1	3468470	3468952	R	hypothetical protein	complement(3468470..3468952)	Mycobacterium bovis BCG str. Mexico	11811491
YP_005172641.1	CDS	BCGMEX_3187c	NC_016804.1	3468949	3469908	R	Differs from Rv3166c and Mb3191c by 1aa, A202S in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(3468949..3469908)	Mycobacterium bovis BCG str. Mexico	11811492
YP_005172642.1	CDS	BCGMEX_3188c	NC_016804.1	3469988	3470614	R	putative transcriptional regulatory protein, TetR family	complement(3469988..3470614)	Mycobacterium bovis BCG str. Mexico	11811493
YP_005172643.1	CDS	BCGMEX_3189	NC_016804.1	3470659	3471795	D	Differs from Mb3193 by 1aa, W65R in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3470659..3471795	Mycobacterium bovis BCG str. Mexico	11811494
YP_005172644.1	CDS	BCGMEX_3190	NC_016804.1	3471795	3472919	D	hypothetical protein	3471795..3472919	Mycobacterium bovis BCG str. Mexico	11811495
YP_005172645.1	CDS	aofH	NC_016804.1	3473062	3474408	D	putative flavin-containing monoamine oxidase	3473062..3474408	Mycobacterium bovis BCG str. Mexico	11811496
YP_005172646.1	CDS	hpx	NC_016804.1	3474403	3475302	R	putative non-heme haloperoxidase	complement(3474403..3475302)	Mycobacterium bovis BCG str. Mexico	11811497
YP_005172647.1	CDS	BCGMEX_3193c	NC_016804.1	3475439	3475921	R	hypothetical protein	complement(3475439..3475921)	Mycobacterium bovis BCG str. Mexico	11811498
YP_005172648.1	CDS	BCGMEX_3194c	NC_016804.1	3476000	3476602	R	putative transcriptional regulatory protein, TetR family	complement(3476000..3476602)	Mycobacterium bovis BCG str. Mexico	11811499
YP_005172649.1	CDS	BCGMEX_3195	NC_016804.1	3476695	3477402	D	Differs from Rv3174 by 1aa, A9V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative short chain dehydrogenase	3476695..3477402	Mycobacterium bovis BCG str. Mexico	11811500
YP_005172650.1	CDS	BCGMEX_3196	NC_016804.1	3477417	3478904	D	amidase	3477417..3478904	Mycobacterium bovis BCG str. Mexico	11811501
YP_005172651.1	CDS	mesTb	NC_016804.1	3478901	3479218	R	n Mycobacterium tuberculosis strain H37Rv, mesT exists as a single gene. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a frameshift due to a single base deletion splits mesT into 2 parts, mesTa and mesTb.; putative epoxide hydrolase	complement(3478901..3479218)	Mycobacterium bovis BCG str. Mexico	11811502
YP_005172652.1	CDS	mesTa	NC_016804.1	3479230	3479856	R	In Mycobacterium tuberculosis strain H37Rv, mesT exists as a single gene. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a frameshift due to a single base deletion splits mesT into 2 parts, mesTa and mesTb; putative epoxide hydrolase	complement(3479230..3479856)	Mycobacterium bovis BCG str. Mexico	11811503
YP_005172653.1	CDS	BCGMEX_3199	NC_016804.1	3480003	3480863	D	putative peroxidase	3480003..3480863	Mycobacterium bovis BCG str. Mexico	11811504
YP_005172654.1	CDS	BCGMEX_3200	NC_016804.1	3480994	3481353	D	hypothetical protein	3480994..3481353	Mycobacterium bovis BCG str. Mexico	11811505
YP_005172655.1	CDS	BCGMEX_3201	NC_016804.1	3481593	3481886	D	hypothetical protein	3481593..3481886	Mycobacterium bovis BCG str. Mexico	11811506
YP_005172656.1	CDS	BCGMEX_3202	NC_016804.1	3482174	3483463	D	hypothetical protein	3482174..3483463	Mycobacterium bovis BCG str. Mexico	11811507
YP_005172657.1	CDS	BCGMEX_3203c	NC_016804.1	3483810	3484244	R	hypothetical protein	complement(3483810..3484244)	Mycobacterium bovis BCG str. Mexico	11811508
YP_005172658.1	CDS	BCGMEX_3204c	NC_016804.1	3484247	3484699	R	hypothetical protein	complement(3484247..3484699)	Mycobacterium bovis BCG str. Mexico	11811509
YP_005172659.1	CDS	BCGMEX_3205	NC_016804.1	3484930	3485274	D	hypothetical protein	3484930..3485274	Mycobacterium bovis BCG str. Mexico	11811510
YP_005172660.1	CDS	BCGMEX_3206	NC_016804.1	3485271	3485600	D	putative transcriptional regulatory protein	3485271..3485600	Mycobacterium bovis BCG str. Mexico	11811511
YP_005172661.1	CDS	BCGMEX_3207	NC_016804.1	3486138	3486485	D	hypothetical protein	3486138..3486485	Mycobacterium bovis BCG str. Mexico	11811512
YP_005172662.1	CDS	BCGMEX_3208	NC_016804.1	3486482	3487102	D	hypothetical protein	3486482..3487102	Mycobacterium bovis BCG str. Mexico	11811513
YP_005172663.1	CDS	BCGMEX_3209c	NC_016804.1	3487262	3488527	R	Differs from Rv3190c by 2aa, P138L, A330V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(3487262..3488527)	Mycobacterium bovis BCG str. Mexico	11811514
YP_005172664.1	CDS	BCGMEX_3210c	NC_016804.1	3489151	3490185	R	putative transposase	complement(3489151..3490185)	Mycobacterium bovis BCG str. Mexico	11811515
YP_005172665.1	CDS	BCGMEX_3211	NC_016804.1	3491400	3491861	D	hypothetical protein	3491400..3491861	Mycobacterium bovis BCG str. Mexico	11811517
YP_005172666.1	CDS	BCGMEX_3212c	NC_016804.1	3492031	3495009	R	Differs from Rv3193c by 2aa, E356Q, Q843R, and from Mb3215c by 1aa, E356Q in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(3492031..3495009)	Mycobacterium bovis BCG str. Mexico	11811518
YP_005172667.1	CDS	BCGMEX_3213c	NC_016804.1	3495101	3496123	R	putative secreted protein	complement(3495101..3496123)	Mycobacterium bovis BCG str. Mexico	11811519
YP_005172668.1	CDS	BCGMEX_3214	NC_016804.1	3496201	3497619	D	hypothetical protein	3496201..3497619	Mycobacterium bovis BCG str. Mexico	11811520
YP_005172669.1	CDS	BCGMEX_3215	NC_016804.1	3497625	3498524	D	hypothetical protein	3497625..3498524	Mycobacterium bovis BCG str. Mexico	11811521
YP_005172670.1	CDS	BCGMEX_3216c	NC_016804.1	3498533	3498733	R	hypothetical protein	complement(3498533..3498733)	Mycobacterium bovis BCG str. Mexico	11811522
YP_005172671.1	CDS	BCGMEX_3217	NC_016804.1	3498871	3500214	D	putative ATP-binding protein ABC transporter	3498871..3500214	Mycobacterium bovis BCG str. Mexico	11811523
YP_005172672.1	CDS	whiB7	NC_016804.1	3500248	3500526	R	putative transcriptional regulatory protein whiB-like protein	complement(3500248..3500526)	Mycobacterium bovis BCG str. Mexico	11811524
YP_005172673.1	CDS	uvrD2	NC_016804.1	3500956	3503058	R	putative DNA helicase II-like protein	complement(3500956..3503058)	Mycobacterium bovis BCG str. Mexico	11811526
YP_005172674.1	CDS	BCGMEX_3220	NC_016804.1	3503182	3503436	D	putative glutaredoxin protein	3503182..3503436	Mycobacterium bovis BCG str. Mexico	11811527
YP_005172675.1	CDS	nudC	NC_016804.1	3503449	3504390	R	Differs from Rv3199c by 1aa, P237Q in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; NADH pyrophosphatase	complement(3503449..3504390)	Mycobacterium bovis BCG str. Mexico	11811528
YP_005172676.1	CDS	BCGMEX_3222c	NC_016804.1	3504449	3505516	R	Differs from Rv3200c by 1aa, D12N in Mycobacterium bovis , Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane cation transporte	complement(3504449..3505516)	Mycobacterium bovis BCG str. Mexico	11811529
YP_005172677.1	CDS	BCGMEX_3223c	NC_016804.1	3505578	3508883	R	ATP-dependent DNA helicase	complement(3505578..3508883)	Mycobacterium bovis BCG str. Mexico	11811530
YP_005172678.1	CDS	BCGMEX_3224c	NC_016804.1	3508880	3512047	R	Differs from Rv3202c by 1aa, A748V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative ATP-dependent DNA helicase	complement(3508880..3512047)	Mycobacterium bovis BCG str. Mexico	11811531
YP_005172679.1	CDS	BCGMEX_3225	NC_016804.1	3512124	3512342	D	hypothetical protein	3512124..3512342	Mycobacterium bovis BCG str. Mexico	11811532
YP_005172680.1	CDS	lipV	NC_016804.1	3512484	3513158	D	putative lipase	3512484..3513158	Mycobacterium bovis BCG str. Mexico	11811533
YP_005172681.1	CDS	BCGMEX_3227	NC_016804.1	3513161	3513466	D	Differs from Rv3204 by 1aa, A34T in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative DNA-methyltransferase	3513161..3513466	Mycobacterium bovis BCG str. Mexico	11811534
YP_005172682.1	CDS	BCGMEX_3228c	NC_016804.1	3513473	3514351	R	hypothetical protein	complement(3513473..3514351)	Mycobacterium bovis BCG str. Mexico	11811535
YP_005172683.1	CDS	moeB1	NC_016804.1	3514378	3515556	R	Differs from Mb3231c by 1aa, addition of P197 in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; molybdenum cofactor biosynthesis protein	complement(3514378..3515556)	Mycobacterium bovis BCG str. Mexico	11811536
YP_005172684.1	CDS	BCGMEX_3230c	NC_016804.1	3515647	3516504	R	Differs from Rv3207c by 1aa, N157D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(3515647..3516504)	Mycobacterium bovis BCG str. Mexico	11811537
YP_005172685.1	CDS	BCGMEX_3231	NC_016804.1	3516850	3517536	D	putative transcriptional regulatory protein, TetR family	3516850..3517536	Mycobacterium bovis BCG str. Mexico	11811538
YP_005172686.1	CDS	BCGMEX_3232c	NC_016804.1	3517523	3517795	R	hypothetical protein	complement(3517523..3517795)	Mycobacterium bovis BCG str. Mexico	11811539
YP_005172687.1	CDS	BCGMEX_3233c	NC_016804.1	3518002	3518331	R	putative helicase	complement(3518002..3518331)	Mycobacterium bovis BCG str. Mexico	11811540
YP_005172688.1	CDS	BCGMEX_3234	NC_016804.1	3518120	3518680	D	putative threonine and proline rich protein	3518120..3518680	Mycobacterium bovis BCG str. Mexico	11811541
YP_005172689.1	CDS	BCGMEX_3235c	NC_016804.1	3518690	3519385	R	hypothetical protein	complement(3518690..3519385)	Mycobacterium bovis BCG str. Mexico	11811542
YP_005172690.1	CDS	rhlE	NC_016804.1	3519644	3521227	D	Differs from Mb3237 by 1aa, V17A in Mycobacterium tuberculosis, BCG Pasteur, BCG Tokyo and BCG Mexico; putative ATP-dependent RNA helicase	3519644..3521227	Mycobacterium bovis BCG str. Mexico	11811543
YP_005172691.1	CDS	BCGMEX_3237	NC_016804.1	3521240	3522463	D	Differs from Mb3238 by 1aa, G225D, and from Rv3212 by 2aa, G225D, A250V in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3521240..3522463	Mycobacterium bovis BCG str. Mexico	11811544
YP_005172692.1	CDS	BCGMEX_3238c	NC_016804.1	3522539	3523339	R	Differs from Rv3213c by 1aa, E144K in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative soj/parA-related protein	complement(3522539..3523339)	Mycobacterium bovis BCG str. Mexico	11811545
YP_005172693.1	CDS	gpm2_1	NC_016804.1	3523493	3524104	D	putative phosphoglycerate mutase	3523493..3524104	Mycobacterium bovis BCG str. Mexico	11811546
YP_005172694.1	CDS	entC_1	NC_016804.1	3524101	3525219	D	putative isochorismate synthase	3524101..3525219	Mycobacterium bovis BCG str. Mexico	11811547
YP_005172695.1	CDS	BCGMEX_3241	NC_016804.1	3525367	3525699	D	putative acetyltransferase	3525367..3525699	Mycobacterium bovis BCG str. Mexico	11811548
YP_005172696.1	CDS	BCGMEX_3242c	NC_016804.1	3525651	3526082	R	putative integral membrane protein	complement(3525651..3526082)	Mycobacterium bovis BCG str. Mexico	11811549
YP_005172697.1	CDS	BCGMEX_3243	NC_016804.1	3526315	3527280	D	hypothetical protein	3526315..3527280	Mycobacterium bovis BCG str. Mexico	11811550
YP_005172698.1	CDS	whiB1_1	NC_016804.1	3527560	3527814	D	putative transcriptional regulatory protein whiB-like protein	3527560..3527814	Mycobacterium bovis BCG str. Mexico	11811551
YP_005172699.1	CDS	BCGMEX_3245c	NC_016804.1	3527876	3529381	R	Differs from Rv3220c by 1aa, N47D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative sensor histidine kinase pdtaS	complement(3527876..3529381)	Mycobacterium bovis BCG str. Mexico	11811552
YP_005172700.1	CDS	BCGMEX_3246c	NC_016804.1	3529398	3529613	R	hypothetical protein	complement(3529398..3529613)	Mycobacterium bovis BCG str. Mexico	11811553
YP_005172701.1	CDS	BCGMEX_3247c	NC_016804.1	3529898	3530203	R	putative anti-sigma factor	complement(3529898..3530203)	Mycobacterium bovis BCG str. Mexico	11811554
YP_005172702.1	CDS	BCGMEX_3248c	NC_016804.1	3530200	3530751	R	hypothetical protein	complement(3530200..3530751)	Mycobacterium bovis BCG str. Mexico	11811555
YP_005172703.1	CDS	rpoE_1	NC_016804.1	3530748	3531398	R	RNA polymerase sigma-E factor	complement(3530748..3531398)	Mycobacterium bovis BCG str. Mexico	11811556
YP_005172704.1	CDS	BCGMEX_3250	NC_016804.1	3531698	3532546	D	Short-chain dehydrogenase/reductase family	3531698..3532546	Mycobacterium bovis BCG str. Mexico	11811557
YP_005172705.1	CDS	BCGMEX_3251	NC_016804.1	3532482	3532670	D	hypothetical protein	3532482..3532670	Mycobacterium bovis BCG str. Mexico	11811558
YP_005172706.1	CDS	BCGMEX_3252c	NC_016804.1	3532648	3532866	D	hypothetical protein	3532648..3532866	Mycobacterium bovis BCG str. Mexico	11811559
YP_005172707.1	CDS	BCGMEX_3253c	NC_016804.1	3532863	3534287	R	Differs from Rv3225c by 1aa T306A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transferase	complement(3532863..3534287)	Mycobacterium bovis BCG str. Mexico	11811560
YP_005172708.1	CDS	BCGMEX_3254c	NC_016804.1	3534411	3535169	R	hypothetical protein	complement(3534411..3535169)	Mycobacterium bovis BCG str. Mexico	11811561
YP_005172709.1	CDS	aroA_1	NC_016804.1	3535224	3536576	D	Differs from Mb3256 by 1aa, R150H in Mycobacterium tuberculosis, BCG Pasteur, BCG Tokyo and BCG Mexico; 3-phosphoshikimate 1-carboxyvinyltransferase	3535224..3536576	Mycobacterium bovis BCG str. Mexico	11811562
YP_005172710.1	CDS	BCGMEX_3256	NC_016804.1	3536573	3537565	D	Differs from Rv3228, Mb3257 and BCG_3351 by 1aa, D169G in Mycobacterium bovis BCG Pasteur and BCG Mexico; hypothetical protein	3536573..3537565	Mycobacterium bovis BCG str. Mexico	11811563
YP_005172711.1	CDS	desA3_1	NC_016804.1	3537598	3538881	R	putative linoleoyl-CoA desaturase	complement(3537598..3538881)	Mycobacterium bovis BCG str. Mexico	11811564
YP_005172712.1	CDS	BCGMEX_3258c	NC_016804.1	3538959	3540101	R	Differs from Rv3230c by 1aa, C105R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative oxidoreductase	complement(3538959..3540101)	Mycobacterium bovis BCG str. Mexico	11811565
YP_005172713.1	CDS	BCGMEX_3259c	NC_016804.1	3540211	3540720	R	In DU2 of BCG Pasteur and BCG Mexico, the second copy (BCG_3354c) is truncated; hypothetical protein	complement(3540211..3540720)	Mycobacterium bovis BCG str. Mexico	11811566
YP_005172714.1	CDS	pvdS	NC_016804.1	3540717	3541604	R	putative transcriptional regulatory protein	complement(3540717..3541604)	Mycobacterium bovis BCG str. Mexico	11811567
YP_005172715.1	CDS	BCGMEX_3261c	NC_016804.1	3541628	3543037	R	In Mycobacterium tuberculosis H37Rv, Rv3234c and Rv3233c exist as 2 genes. In Mycobacterium bovis BCG Pasteur, BCG Mexico and Mycobacterium bovis, a single base insertion leads to a single product that is more similar to Rv3234c; hypothetical protein	complement(3541628..3543037)	Mycobacterium bovis BCG str. Mexico	11811568
YP_005172716.1	CDS	BCGMEX_3262	NC_016804.1	3543148	3543789	D	hypothetical protein	3543148..3543789	Mycobacterium bovis BCG str. Mexico	11811569
YP_005172717.1	CDS	BCGMEX_3263c	NC_016804.1	3543807	3544964	R	putative integral membrane transport protein	complement(3543807..3544964)	Mycobacterium bovis BCG str. Mexico	11811570
YP_005172718.1	CDS	BCGMEX_3264c	NC_016804.1	3544969	3545451	R	hypothetical protein	complement(3544969..3545451)	Mycobacterium bovis BCG str. Mexico	11811571
YP_005172719.1	CDS	BCGMEX_3265c	NC_016804.1	3545512	3546246	R	putative integral membrane protein	complement(3545512..3546246)	Mycobacterium bovis BCG str. Mexico	11811572
YP_005172720.1	CDS	BCGMEX_3266c	NC_016804.1	3546305	3549451	R	Differs from Mb3267c by 1aa, R867H in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane transport protein	complement(3546305..3549451)	Mycobacterium bovis BCG str. Mexico	11811573
YP_005172721.1	CDS	secA1	NC_016804.1	3549530	3552379	R	protein translocase subunit	complement(3549530..3552379)	Mycobacterium bovis BCG str. Mexico	11811574
YP_005172722.1	CDS	BCGMEX_3268c	NC_016804.1	3552458	3553102	R	hypothetical protein	complement(3552458..3553102)	Mycobacterium bovis BCG str. Mexico	11811575
YP_005172723.1	CDS	BCGMEX_3269c	NC_016804.1	3553418	3554059	R	Differs from Rv3242c and Mb3270c by 1aa, S89L in Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(3553418..3554059)	Mycobacterium bovis BCG str. Mexico	11811576
YP_005172724.1	CDS	BCGMEX_3270c	NC_016804.1	3554097	3554939	R	hypothetical protein	complement(3554097..3554939)	Mycobacterium bovis BCG str. Mexico	11811577
YP_005172725.1	CDS	lpqB	NC_016804.1	3555007	3556758	R	Differs from Rv3244c by 2aa, G142D, L394S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative lipoprotein	complement(3555007..3556758)	Mycobacterium bovis BCG str. Mexico	11811578
YP_005172726.1	CDS	mtrB	NC_016804.1	3556758	3558461	R	Differs from Rv3245c by 1aa, L517M in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Sensor histidine kinase	complement(3556758..3558461)	Mycobacterium bovis BCG str. Mexico	11811579
YP_005172727.1	CDS	mtrA	NC_016804.1	3558511	3559197	R	DNA-binding response regulator	complement(3558511..3559197)	Mycobacterium bovis BCG str. Mexico	11811580
YP_005172728.1	CDS	tmk	NC_016804.1	3559267	3559911	R	thymidylate kinase	complement(3559267..3559911)	Mycobacterium bovis BCG str. Mexico	11811581
YP_005172729.1	CDS	sahH	NC_016804.1	3560008	3561495	R	Differs from Mb3276c by 1aa V189I in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; adenosylhomocysteinase	complement(3560008..3561495)	Mycobacterium bovis BCG str. Mexico	11811582
YP_005172730.1	CDS	BCGMEX_3276c	NC_016804.1	3561600	3562235	R	putative transcriptional regulatory protein, TetR family	complement(3561600..3562235)	Mycobacterium bovis BCG str. Mexico	11811583
YP_005172731.1	CDS	BCGMEX_3277c	NC_016804.1	3562232	3562414	R	Rubredoxin	complement(3562232..3562414)	Mycobacterium bovis BCG str. Mexico	11811584
YP_005172732.1	CDS	BCGMEX_3278c	NC_016804.1	3562419	3562586	R	Rubredoxin	complement(3562419..3562586)	Mycobacterium bovis BCG str. Mexico	11811585
YP_005172733.1	CDS	alkB	NC_016804.1	3562586	3563836	R	alkane-1 monooxygenase	complement(3562586..3563836)	Mycobacterium bovis BCG str. Mexico	11811586
YP_005172734.1	CDS	BCGMEX_3280c	NC_016804.1	3563945	3565432	R	putative cationic amino acid transport integral membrane protein	complement(3563945..3565432)	Mycobacterium bovis BCG str. Mexico	11811587
YP_005172735.1	CDS	BCGMEX_3281	NC_016804.1	3565523	3566911	D	hypothetical protein	3565523..3566911	Mycobacterium bovis BCG str. Mexico	11811588
YP_005172736.1	CDS	manA	NC_016804.1	3566889	3568115	R	Mannose-6-phosphate isomerase	complement(3566889..3568115)	Mycobacterium bovis BCG str. Mexico	11811589
YP_005172737.1	CDS	BCGMEX_3283c	NC_016804.1	3568123	3569163	R	hypothetical protein	complement(3568123..3569163)	Mycobacterium bovis BCG str. Mexico	11811590
YP_005172738.1	CDS	manB	NC_016804.1	3569160	3570557	R	Differs from Rv3257c by 1aa, L206S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; phosphomannomutase	complement(3569160..3570557)	Mycobacterium bovis BCG str. Mexico	11811591
YP_005172739.1	CDS	BCGMEX_3285c	NC_016804.1	3570659	3571150	R	hypothetical protein	complement(3570659..3571150)	Mycobacterium bovis BCG str. Mexico	11811592
YP_005172740.1	CDS	BCGMEX_3286	NC_016804.1	3571273	3571692	D	hypothetical protein	3571273..3571692	Mycobacterium bovis BCG str. Mexico	11811593
YP_005172741.1	CDS	whiB2	NC_016804.1	3571720	3571989	R	transcriptional regulatory protein WhiB-like protein	complement(3571720..3571989)	Mycobacterium bovis BCG str. Mexico	11811594
YP_005172742.1	CDS	cofD	NC_016804.1	3572391	3573386	D	LPPG:FO 2-phospho-L-lactate transferase	3572391..3573386	Mycobacterium bovis BCG str. Mexico	11811595
YP_005172743.1	CDS	cofE	NC_016804.1	3573383	3574729	D	F420-0:gamma-glutamyl ligase	3573383..3574729	Mycobacterium bovis BCG str. Mexico	11811596
YP_005172744.1	CDS	BCGMEX_3290	NC_016804.1	3575025	3576686	D	putative DNA methylase	3575025..3576686	Mycobacterium bovis BCG str. Mexico	11811597
YP_005172745.1	CDS	manC	NC_016804.1	3576746	3577825	R	putative mannose-1-phosphate guanyltransferase	complement(3576746..3577825)	Mycobacterium bovis BCG str. Mexico	11811598
YP_005172746.1	CDS	wbbL1	NC_016804.1	3577827	3578720	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, an in-frame deletion of 12 bp leads to a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (297 aa versus 301aa); dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase	complement(3577827..3578720)	Mycobacterium bovis BCG str. Mexico	11811599
YP_005172747.1	CDS	rmld	NC_016804.1	3578731	3579645	R	Differs from Rv3266c by 1aa, P257S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; dTDP-4-dehydrorhamnose reductase	complement(3578731..3579645)	Mycobacterium bovis BCG str. Mexico	11811600
YP_005172748.1	CDS	BCGMEX_3294	NC_016804.1	3579721	3581217	D	hypothetical protein	3579721..3581217	Mycobacterium bovis BCG str. Mexico	11811601
YP_005172749.1	CDS	BCGMEX_3295	NC_016804.1	3581256	3581945	D	hypothetical protein	3581256..3581945	Mycobacterium bovis BCG str. Mexico	11811602
YP_005172750.1	CDS	BCGMEX_3296	NC_016804.1	3582070	3582351	D	hypothetical protein	3582070..3582351	Mycobacterium bovis BCG str. Mexico	11811603
YP_005172751.1	CDS	ctpC	NC_016804.1	3582362	3584518	D	putative metal cation-transporting P-type ATPase C	3582362..3584518	Mycobacterium bovis BCG str. Mexico	11811604
YP_005172752.1	CDS	BCGMEX_3298c	NC_016804.1	3584515	3585183	R	putative integral membrane protein	complement(3584515..3585183)	Mycobacterium bovis BCG str. Mexico	11811605
YP_005172753.1	CDS	BCGMEX_3299	NC_016804.1	3585284	3586468	D	Differs from Mb3300 by 1aa, R259G, and from Rv3272 by 2aa, R259G, S347N in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3585284..3586468	Mycobacterium bovis BCG str. Mexico	11811606
YP_005172754.1	CDS	BCGMEX_3300	NC_016804.1	3586473	3588767	D	carbonic anhydrase	3586473..3588767	Mycobacterium bovis BCG str. Mexico	11811607
YP_005172755.1	CDS	fadE25	NC_016804.1	3588756	3589925	R	putative acyl-CoA dehydrogenase	complement(3588756..3589925)	Mycobacterium bovis BCG str. Mexico	11811608
YP_005172756.1	CDS	purE	NC_016804.1	3589950	3590474	R	Differs from Rv3275c by 1aa, R125G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; phosphoribosylaminoimidazole carboxylase catalytic subunit	complement(3589950..3590474)	Mycobacterium bovis BCG str. Mexico	11811609
YP_005172757.1	CDS	purK	NC_016804.1	3590471	3591760	R	phosphoribosylaminoimidazole carboxylase ATPase subunit	complement(3590471..3591760)	Mycobacterium bovis BCG str. Mexico	11811610
YP_005172758.1	CDS	BCGMEX_3304	NC_016804.1	3591714	3592532	D	Differs from Rv3277 by 1 aa, L272S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	3591714..3592532	Mycobacterium bovis BCG str. Mexico	11811611
YP_005172759.1	CDS	BCGMEX_3305c	NC_016804.1	3592487	3593005	R	Differs from Rv3278c by 1aa, K160E in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur and BCG Mexico. Differs from Rv3278c by 2aa, T54I, K160E in Mycobacterium bovis BCG Tokyo.; putative transmembrane protein	complement(3592487..3593005)	Mycobacterium bovis BCG str. Mexico	11811612
YP_005172760.1	CDS	birA	NC_016804.1	3593048	3593848	R	Differs from Rv3279c by 1aa, N211D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; biotin--[acetyl-CoA-carboxylase] synthetase; putative biotin operon repressor	complement(3593048..3593848)	Mycobacterium bovis BCG str. Mexico	11811613
YP_005172761.1	CDS	accD5	NC_016804.1	3593898	3595544	D	Differs from Rv3280 by 1aa, A448V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative propionyl-CoA carboxylase beta chain 5	3593898..3595544	Mycobacterium bovis BCG str. Mexico	11811614
YP_005172762.1	CDS	BCGMEX_3308	NC_016804.1	3595525	3595995	D	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, an in-frame deletion of 63 bp leads to a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (156 aa versus 177aa). Loss of tandem repeat SRVSGTNEVSDGNETNNPAPV; hypothetical protein	3595525..3595995	Mycobacterium bovis BCG str. Mexico	11811615
YP_005172763.1	CDS	BCGMEX_3309	NC_016804.1	3595992	3596660	D	Differs from Rv3282 by 1aa, S133A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and Mexico; Maf-like protein	3595992..3596660	Mycobacterium bovis BCG str. Mexico	11811616
YP_005172764.1	CDS	sseA	NC_016804.1	3596701	3597594	D	Differs from Mb3311 by 1aa, G170D in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative thiosulfate sulfurtransferase	3596701..3597594	Mycobacterium bovis BCG str. Mexico	11811617
YP_005172765.1	CDS	BCGMEX_3311	NC_016804.1	3597591	3598022	D	hypothetical protein	3597591..3598022	Mycobacterium bovis BCG str. Mexico	11811618
YP_005172766.1	CDS	accA3	NC_016804.1	3598130	3599932	D	putative acetyl-/propionyl-coenzyme A carboxylase alpha chain	3598130..3599932	Mycobacterium bovis BCG str. Mexico	11811619
YP_005172767.1	CDS	sigF	NC_016804.1	3599942	3600727	R	RNA polymerase sigma factor SigF	complement(3599942..3600727)	Mycobacterium bovis BCG str. Mexico	11811620
YP_005172768.1	CDS	rsbW	NC_016804.1	3600724	3601161	R	anti-sigma factor	complement(3600724..3601161)	Mycobacterium bovis BCG str. Mexico	11811621
YP_005172769.1	CDS	BCGMEX_3315c	NC_016804.1	3601359	3601772	R	usfY; hypothetical protein	complement(3601359..3601772)	Mycobacterium bovis BCG str. Mexico	11811622
YP_005172770.1	CDS	BCGMEX_3316c	NC_016804.1	3601807	3602184	R	putative transmembrane protein	complement(3601807..3602184)	Mycobacterium bovis BCG str. Mexico	11811623
YP_005172771.1	CDS	lat	NC_016804.1	3602218	3603567	R	L-lysine aminotransferase	complement(3602218..3603567)	Mycobacterium bovis BCG str. Mexico	11811624
YP_005172772.1	CDS	BCGMEX_3318c	NC_016804.1	3603618	3604070	R	Differs from Rv3291c by 1aa, V22A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transcriptional regulatory protein, AsnC-family	complement(3603618..3604070)	Mycobacterium bovis BCG str. Mexico	11811625
YP_005172773.1	CDS	BCGMEX_3319	NC_016804.1	3604101	3605348	D	hypothetical protein	3604101..3605348	Mycobacterium bovis BCG str. Mexico	11811626
YP_005172774.1	CDS	pcd	NC_016804.1	3605375	3606859	D	Differs from Rv3293 by 1aa, C273G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative piperideine-6-carboxylic acid dehydrogenase	3605375..3606859	Mycobacterium bovis BCG str. Mexico	11811627
YP_005172775.1	CDS	BCGMEX_3321c	NC_016804.1	3606959	3607768	R	hypothetical protein	complement(3606959..3607768)	Mycobacterium bovis BCG str. Mexico	11811628
YP_005172776.1	CDS	BCGMEX_3322	NC_016804.1	3607839	3608504	D	putative transcriptional regulatory protein, TetR family	3607839..3608504	Mycobacterium bovis BCG str. Mexico	11811629
YP_005172777.1	CDS	lhr	NC_016804.1	3608548	3613089	D	Differs from Rv3296 by 3aa, M719V, N818D, E1059K in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur and BCG Mexico. Differs from Rv3296 by 4aa, T719V, M796L, N818D, E1059K in Mycobacterium bovis BCG Tokyo.; putative ATP-dependent helicase	3608548..3613089	Mycobacterium bovis BCG str. Mexico	11811630
YP_005172778.1	CDS	nei_1	NC_016804.1	3613093	3613860	D	DNA glycosylase	3613093..3613860	Mycobacterium bovis BCG str. Mexico	11811631
YP_005172779.1	CDS	lpqC	NC_016804.1	3613883	3614797	R	putative esterase lipoprotein	complement(3613883..3614797)	Mycobacterium bovis BCG str. Mexico	11811632
YP_005172780.1	CDS	atsB_1	NC_016804.1	3614824	3617736	R	Differs from Rv3299c by 1aa, S204G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; arylsulfatase	complement(3614824..3617736)	Mycobacterium bovis BCG str. Mexico	11811633
YP_005172781.1	CDS	BCGMEX_3327c	NC_016804.1	3617756	3618673	R	Differs from Mb3328c by 1aa, D52N in Mycobacterium tuberculosis H37Rv, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Pseudouridine synthase	complement(3617756..3618673)	Mycobacterium bovis BCG str. Mexico	11811634
YP_005172782.1	CDS	phoY1_1	NC_016804.1	3618685	3619350	R	Differs from Rv3301c and Mb3329c by 1aa, S74A in BCG Pasteur, BCG Tokyo and BCG Mexico; phosphate transport system regulatory protein PhoU	complement(3618685..3619350)	Mycobacterium bovis BCG str. Mexico	11811635
YP_005172783.1	CDS	glpD2_1	NC_016804.1	3619458	3621215	R	glycerol-3-phosphate dehydrogenase	complement(3619458..3621215)	Mycobacterium bovis BCG str. Mexico	11811636
YP_005172784.1	CDS	lpdA	NC_016804.1	3621296	3621895	R	In Mycobacterium bovis BCG Pasteur and BCG Mexico, lpdA' is truncated and contains one endpoint of BCG-specific tandem duplication region, DU2. In Mycobacterium bovis, the CDS has 21 codons fewer than Rv3303c due to point mutation introducing stop codon; dihydrolipoamide dehydrogenase	complement(3621296..3621895)	Mycobacterium bovis BCG str. Mexico	11811637
YP_005172785.1	CDS	BCGMEX_3331c	NC_016804.1	3621895	3622491	R	In Mycobacterium bovis BCG Pasteur and BCG Mexico, Mb3333c is truncated compared to its homologs in Mycobacterium tuberculosis strain H37Rv (Rv3213c) and Mycobacterium bovis AF2122/97 (Mb3239c). It contains one endpoint of BCG-specific tandem duplication region, DU2. Differs from Rv3213c by 2aa, E144K and P198L in BCG Pasteur and BCG Mexico; putative soj/parA-related protein	complement(3621895..3622491)	Mycobacterium bovis BCG str. Mexico	11811638
YP_005172786.1	CDS	gpm2_2	NC_016804.1	3622645	3623256	D	putative phosphoglycerate mutase	3622645..3623256	Mycobacterium bovis BCG str. Mexico	11811639
YP_005172787.1	CDS	entC_2	NC_016804.1	3623253	3624371	D	putative isochorismate synthase	3623253..3624371	Mycobacterium bovis BCG str. Mexico	11811640
YP_005172788.1	CDS	BCGMEX_3334	NC_016804.1	3624519	3624851	D	putative acetyltransferase	3624519..3624851	Mycobacterium bovis BCG str. Mexico	11811641
YP_005172789.1	CDS	BCGMEX_3335c	NC_016804.1	3624803	3625234	R	putative integral membrane protein	complement(3624803..3625234)	Mycobacterium bovis BCG str. Mexico	11811642
YP_005172790.1	CDS	BCGMEX_3336	NC_016804.1	3625467	3626432	D	hypothetical protein	3625467..3626432	Mycobacterium bovis BCG str. Mexico	11811643
YP_005172791.1	CDS	whiB1_2	NC_016804.1	3626712	3626966	D	transcriptional regulatory protein WhiB-like protein	3626712..3626966	Mycobacterium bovis BCG str. Mexico	11811644
YP_005172792.1	CDS	BCGMEX_3338c	NC_016804.1	3627028	3628533	R	Differs from Rv3220c by 1aa, N47D in Mycobacterium bovis BCG Pasteur and BCG Mexico; putative two component sensor kinase pdtaS	complement(3627028..3628533)	Mycobacterium bovis BCG str. Mexico	11811645
YP_005172793.1	CDS	BCGMEX_3339c	NC_016804.1	3628550	3628765	R	hypothetical protein	complement(3628550..3628765)	Mycobacterium bovis BCG str. Mexico	11811646
YP_005172794.1	CDS	BCGMEX_3340c	NC_016804.1	3629050	3629355	R	putative anti-sigma factor	complement(3629050..3629355)	Mycobacterium bovis BCG str. Mexico	11811647
YP_005172795.1	CDS	BCGMEX_3341c	NC_016804.1	3629352	3629903	R	hypothetical protein	complement(3629352..3629903)	Mycobacterium bovis BCG str. Mexico	11811648
YP_005172796.1	CDS	rpoE_2	NC_016804.1	3629900	3630550	R	RNA polymerase sigma-E factor	complement(3629900..3630550)	Mycobacterium bovis BCG str. Mexico	11811649
YP_005172797.1	CDS	BCGMEX_3343	NC_016804.1	3630850	3631698	D	Short-chain dehydrogenase/reductase family	3630850..3631698	Mycobacterium bovis BCG str. Mexico	11811650
YP_005172798.1	CDS	BCGMEX_3344	NC_016804.1	3631634	3631822	D	hypothetical protein	3631634..3631822	Mycobacterium bovis BCG str. Mexico	11811651
YP_005172799.1	CDS	BCGMEX_3345c	NC_016804.1	3631800	3632018	D	hypothetical protein	3631800..3632018	Mycobacterium bovis BCG str. Mexico	11811652
YP_005172800.1	CDS	BCGMEX_3346c	NC_016804.1	3632015	3633439	R	Differs from Rv3225c by 1aa T306A in Mycobacterium bovis BCG Pasteur and BCG Mexico; putative transferase	complement(3632015..3633439)	Mycobacterium bovis BCG str. Mexico	11811653
YP_005172801.1	CDS	BCGMEX_3347c	NC_016804.1	3633563	3634321	R	hypothetical protein	complement(3633563..3634321)	Mycobacterium bovis BCG str. Mexico	11811654
YP_005172802.1	CDS	aroA_2	NC_016804.1	3634376	3635728	D	Differs from Mb3256 by 1aa, R150H in BCG Pasteur and BCG Mexico; 3-phosphoshikimate 1-carboxyvinyltransferase	3634376..3635728	Mycobacterium bovis BCG str. Mexico	11811655
YP_005172803.1	CDS	BCGMEX_3349	NC_016804.1	3635725	3636717	D	Differs from Rv3228, Mb3257 and BCG_3351 by 1aa, D169G in Mycobacterium bovis BCG Pasteur and BCG Mexico; hypothetical protein	3635725..3636717	Mycobacterium bovis BCG str. Mexico	11811656
YP_005172804.1	CDS	desA3_2	NC_016804.1	3636750	3638033	R	putative linoleoyl-CoA desaturase	complement(3636750..3638033)	Mycobacterium bovis BCG str. Mexico	11811657
YP_005172805.1	CDS	BCGMEX_3351c	NC_016804.1	3638111	3639253	R	Differs from Rv3230c by 1aa, C105R in Mycobacterium bovis BCG Pasteur and BCG Mexico; putative oxidoreductase	complement(3638111..3639253)	Mycobacterium bovis BCG str. Mexico	11811658
YP_005172806.1	CDS	lat'	NC_016804.1	3639308	3639730	R	Internal deletion of DU2 leads to a truncated copy of Rv3231c and of Rv3290c in Mycobacterium bovis BCG Pasteur and BCG Mexico; L-lysine aminotransferase	complement(3639308..3639730)	Mycobacterium bovis BCG str. Mexico	11811659
YP_005172807.1	CDS	BCGMEX_3353c	NC_016804.1	3639781	3640233	R	Differs from Rv3291c by 1aa, V22A in Mycobacterium bovis BCG Pasteur and BCG Mexico; putative transcriptional regulatory protein, AsnC-family	complement(3639781..3640233)	Mycobacterium bovis BCG str. Mexico	11811660
YP_005172808.1	CDS	BCGMEX_3354	NC_016804.1	3640264	3641511	D	hypothetical protein	3640264..3641511	Mycobacterium bovis BCG str. Mexico	11811661
YP_005172809.1	CDS	pcd_2	NC_016804.1	3641538	3643022	D	Differs from Rv3293 by 1aa, C273G in Mycobacterium bovis BCG Pasteur and BCG Mexico; putative piperideine-6-carboxylic acid dehydrogenase	3641538..3643022	Mycobacterium bovis BCG str. Mexico	11811662
YP_005172810.1	CDS	BCGMEX_3356c	NC_016804.1	3643122	3643931	R	hypothetical protein	complement(3643122..3643931)	Mycobacterium bovis BCG str. Mexico	11811663
YP_005172811.1	CDS	BCGMEX_3357	NC_016804.1	3644002	3644667	D	putative transcriptional regulatory protein, TetR family	3644002..3644667	Mycobacterium bovis BCG str. Mexico	11811664
YP_005172812.1	CDS	lhr_2	NC_016804.1	3644711	3649252	D	Differs from Rv3296 by 3aa, M719V, N818D, E1059K in Mycobacterium bovis BCG Pasteur and BCG Mexico; putative ATP-dependent helicase	3644711..3649252	Mycobacterium bovis BCG str. Mexico	11811665
YP_005172813.1	CDS	nei_2	NC_016804.1	3649256	3650023	D	DNA glycosylase	3649256..3650023	Mycobacterium bovis BCG str. Mexico	11811666
YP_005172814.1	CDS	lpqC_2	NC_016804.1	3650046	3650960	R	putative esterase lipoprotein	complement(3650046..3650960)	Mycobacterium bovis BCG str. Mexico	11811667
YP_005172815.1	CDS	atsB_2	NC_016804.1	3650987	3653899	R	Differs from Rv3299c by 1aa, S204G in Mycobacterium bovis BCG Pasteur and BCG Mexico; arylsulfatase	complement(3650987..3653899)	Mycobacterium bovis BCG str. Mexico	11811668
YP_005172816.1	CDS	BCGMEX_3362c	NC_016804.1	3653919	3654836	R	Differs from Mb3328c by 1aa, D52N in Mycobacterium bovis BCG Pasteur and BCG Mexico; Pseudouridine synthase	complement(3653919..3654836)	Mycobacterium bovis BCG str. Mexico	11811669
YP_005172817.1	CDS	phoY1_2	NC_016804.1	3654848	3655513	R	Differs from Rv3301c and Mb3329c by 1aa, S74A in BCG Pasteur and BCG Mexico; phosphate transport system regulatory protein PhoU	complement(3654848..3655513)	Mycobacterium bovis BCG str. Mexico	11811670
YP_005172818.1	CDS	glpD2_2	NC_016804.1	3655621	3657378	R	glycerol-3-phosphate dehydrogenase	complement(3655621..3657378)	Mycobacterium bovis BCG str. Mexico	11811671
YP_005172819.1	CDS	lpdA	NC_016804.1	3657459	3658874	R	In Mycobacterium bovis BCG Pasteur,BCG Mexico and Mycobacterium bovis, truncation due to a single base transversion results in a shorter product compared to its homolog in Mycobacterium tuberculosis stain H37Rv (471 aa versus 493 aa). Differs from Rv3303c by 2aa, A29T, S308L in Mycobacterium bovis BCG Pasteur and BCG Mexico; dihydrolipoamide dehydrogenase	complement(3657459..3658874)	Mycobacterium bovis BCG str. Mexico	11811672
YP_005172820.1	CDS	BCGMEX_3366	NC_016804.1	3659077	3659556	D	hypothetical protein	3659077..3659556	Mycobacterium bovis BCG str. Mexico	11811673
YP_005172821.1	CDS	amiA1	NC_016804.1	3659575	3660744	R	putative N-acyl-L-amino acid amidohydrolase	complement(3659575..3660744)	Mycobacterium bovis BCG str. Mexico	11811674
YP_005172822.1	CDS	amiB1	NC_016804.1	3660741	3661925	R	putative amidase	complement(3660741..3661925)	Mycobacterium bovis BCG str. Mexico	11811675
YP_005172823.1	CDS	deoD	NC_016804.1	3661990	3662796	D	putative purine nucleoside phosphorylase	3661990..3662796	Mycobacterium bovis BCG str. Mexico	11811676
YP_005172824.1	CDS	pmmB	NC_016804.1	3662800	3664404	D	Differs from Rv3308 by 1aa, G440S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative phosphomannomutase	3662800..3664404	Mycobacterium bovis BCG str. Mexico	11811677
YP_005172825.1	CDS	upp	NC_016804.1	3664406	3665029	R	uracil phosphoribosyltransferase	complement(3664406..3665029)	Mycobacterium bovis BCG str. Mexico	11811678
YP_005172826.1	CDS	sapM	NC_016804.1	3665134	3666033	D	Differs from Rv3310 by 1aa, A171T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative acid phosphatase	3665134..3666033	Mycobacterium bovis BCG str. Mexico	11811679
YP_005172827.1	CDS	BCGMEX_3373	NC_016804.1	3666057	3667319	D	hypothetical protein	3666057..3667319	Mycobacterium bovis BCG str. Mexico	11811680
YP_005172828.1	CDS	BCGMEX_3374c	NC_016804.1	3667340	3668266	R	hypothetical protein	complement(3667340..3668266)	Mycobacterium bovis BCG str. Mexico	11811681
YP_005172829.1	CDS	BCGMEX_3375c	NC_016804.1	3668292	3668462	R	hypothetical protein	complement(3668292..3668462)	Mycobacterium bovis BCG str. Mexico	11811682
YP_005172830.1	CDS	BCGMEX_3376c	NC_016804.1	3668641	3668952	R	Secreted protein antigen	complement(3668641..3668952)	Mycobacterium bovis BCG str. Mexico	11811683
YP_005172831.1	CDS	add	NC_016804.1	3669023	3670120	R	Adenosine deaminase	complement(3669023..3670120)	Mycobacterium bovis BCG str. Mexico	11811684
YP_005172832.1	CDS	deoA	NC_016804.1	3670120	3671403	R	Differs from Rv3314c by 1aa, W309R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; thymidine phosphorylase	complement(3670120..3671403)	Mycobacterium bovis BCG str. Mexico	11811685
YP_005172833.1	CDS	cdd	NC_016804.1	3671400	3671801	R	cytidine deaminase	complement(3671400..3671801)	Mycobacterium bovis BCG str. Mexico	11811686
YP_005172834.1	CDS	sdhC	NC_016804.1	3672038	3672376	D	putative succinate dehydrogenase, cytochrome b-556 subunit	3672038..3672376	Mycobacterium bovis BCG str. Mexico	11811687
YP_005172835.1	CDS	sdhD	NC_016804.1	3672373	3672807	D	Differs from Rv3317 by 1aa, L54V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Succinate dehydrogenase	3672373..3672807	Mycobacterium bovis BCG str. Mexico	11811688
YP_005172836.1	CDS	sdhA	NC_016804.1	3672936	3674708	D	Succinate dehydrogenase flavoprotein subunit	3672936..3674708	Mycobacterium bovis BCG str. Mexico	11811689
YP_005172837.1	CDS	sdhB	NC_016804.1	3674708	3675499	D	Differs from Rv3319 by 1aa, E35D in BCG Pasteur and BCG Mexico, and by 2aa, E35D and T88A in BCG Tokyo; Succinate dehydrogenase iron-sulfur protein	3674708..3675499	Mycobacterium bovis BCG str. Mexico	11811690
YP_005172838.1	CDS	BCGMEX_3384c	NC_016804.1	3675578	3676006	R	hypothetical protein	complement(3675578..3676006)	Mycobacterium bovis BCG str. Mexico	11811691
YP_005172839.1	CDS	BCGMEX_3385c	NC_016804.1	3676010	3676252	R	hypothetical protein	complement(3676010..3676252)	Mycobacterium bovis BCG str. Mexico	11811692
YP_005172840.1	CDS	BCGMEX_3386c	NC_016804.1	3676374	3676988	R	putative methyltransferase	complement(3676374..3676988)	Mycobacterium bovis BCG str. Mexico	11811693
YP_005172841.1	CDS	moaX	NC_016804.1	3676985	3677650	R	putative MoaD-MoaE fusion protein	complement(3676985..3677650)	Mycobacterium bovis BCG str. Mexico	11811694
YP_005172842.1	CDS	moaC3	NC_016804.1	3677651	3678184	R	molybdenum cofactor biosynthesis protein C	complement(3677651..3678184)	Mycobacterium bovis BCG str. Mexico	11811695
YP_005172843.1	CDS	moaB3	NC_016804.1	3678181	3678555	R	Belongs to the RvD5 region. Absent in Mycobacterium tuberculosis strain H37Rv; putative pterin-4-alpha-carbinolamine dehydratase	complement(3678181..3678555)	Mycobacterium bovis BCG str. Mexico	11811696
YP_005172844.1	CDS	moaA3	NC_016804.1	3678652	3679716	R	Belongs to the RvD5 region. Absent in Mycobacterium tuberculosis strain H37Rv; putative molybdenum cofactor biosynthesis protein A	complement(3678652..3679716)	Mycobacterium bovis BCG str. Mexico	11811697
YP_005172845.1	CDS	BCGMEX_3391	NC_016804.1	3679771	3680121	D	Belongs to the RvD5 region. Absent in Mycobacterium tuberculosis strain H37Rv but present in CDC1551 (CDS not annotated); hypothetical protein	3679771..3680121	Mycobacterium bovis BCG str. Mexico	11811698
YP_005172846.1	CDS	BCGMEX_3392	NC_016804.1	3680099	3680485	D	Belongs to the RvD5 region. Absent in Mycobacterium tuberculosis strain H37Rv but present in CDC1551 (CDS not annotated); hypothetical protein	3680099..3680485	Mycobacterium bovis BCG str. Mexico	11811699
YP_005172847.1	CDS	embR2	NC_016804.1	3680361	3681506	D	Belongs to the RvD5 region. Absent in Mycobacterium tuberculosis strain H37Rv; putative transcriptional regulator	3680361..3681506	Mycobacterium bovis BCG str. Mexico	11811700
YP_005172848.1	CDS	BCGMEX_3394c	NC_016804.1	3681601	3682245	R	Belongs to the RvD5 region. Absent from Mycobacterium tuberculosis strain H37Rv; hypothetical protein	complement(3681601..3682245)	Mycobacterium bovis BCG str. Mexico	11811701
YP_005172849.1	CDS	BCGMEX_3395	NC_016804.1	3682412	3684124	D	putative transposase fusion protein	3682412..3684124	Mycobacterium bovis BCG str. Mexico	11811702
YP_005172850.1	CDS	sigJ	NC_016804.1	3684057	3684995	R	Differs from Rv3328c by 1aa, Q41P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; RNA polymerase sigma factor	complement(3684057..3684995)	Mycobacterium bovis BCG str. Mexico	11811703
YP_005172851.1	CDS	BCGMEX_3397	NC_016804.1	3685055	3686371	D	Differs from Rv3329 by 1aa, H122Q in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative aminotransferase	3685055..3686371	Mycobacterium bovis BCG str. Mexico	11811704
YP_005172852.1	CDS	dacB1	NC_016804.1	3686440	3687657	D	putative penicillin-binding protein	3686440..3687657	Mycobacterium bovis BCG str. Mexico	11811705
YP_005172853.1	CDS	sugI	NC_016804.1	3687753	3689246	D	Differs from Mycobacterium bovis (Mb3364) and Mycobacterium bovis BCG Tokyo by 5aa in-frame deletion at position 465, and from Rv3331 by same deletion and 1aa, L423P in Mycobacterium bovis BCG Pasteur and BCG Mexico; putative sugar-transport integral membrane protein	3687753..3689246	Mycobacterium bovis BCG str. Mexico	11811706
YP_005172854.1	CDS	nagA	NC_016804.1	3689243	3690394	D	N-acetylglucosamine-6-phosphate deacetylase	3689243..3690394	Mycobacterium bovis BCG str. Mexico	11811707
YP_005172855.1	CDS	BCGMEX_3401c	NC_016804.1	3690585	3691430	R	hypothetical protein	complement(3690585..3691430)	Mycobacterium bovis BCG str. Mexico	11811708
YP_005172856.1	CDS	BCGMEX_3402	NC_016804.1	3691575	3691886	D	hypothetical protein	3691575..3691886	Mycobacterium bovis BCG str. Mexico	11811709
YP_005172857.1	CDS	BCGMEX_3403	NC_016804.1	3691905	3692345	D	putative transcriptional regulatory protein, MerR-family	3691905..3692345	Mycobacterium bovis BCG str. Mexico	11811710
YP_005172858.1	CDS	BCGMEX_3404c	NC_016804.1	3692379	3693248	R	Differs from Rv3335c and Mb3368c by 1aa, V86A in BCG Pasteur, BCG Tokyo and BCG Mexico; putative integral membrane protein	complement(3692379..3693248)	Mycobacterium bovis BCG str. Mexico	11811711
YP_005172859.1	CDS	trpS	NC_016804.1	3693269	3694279	R	tryptophanyl-tRNA synthetase	complement(3693269..3694279)	Mycobacterium bovis BCG str. Mexico	11811712
YP_005172860.1	CDS	BCGMEX_3406	NC_016804.1	3694304	3695197	D	In Mycobacterium tuberculosis strain H37Rv, Rv3337 and Rv3338 exist as 2 genes with an overlap region between them. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a single base insertion leads to a single product; hypothetical protein	3694304..3695197	Mycobacterium bovis BCG str. Mexico	11811713
YP_005172861.1	CDS	icd1	NC_016804.1	3695264	3696493	R	Differs from Rv3339c and Mb3371c by 1aa, V198A in Mycobacterium bovis BCG Pasteur and BCG Mexico; isocitrate dehydrogenase	complement(3695264..3696493)	Mycobacterium bovis BCG str. Mexico	11811714
YP_005172862.1	CDS	metC	NC_016804.1	3696776	3698125	D	Differs from Rv3340 and Mb3372 by 1aa, G83A in BCG Pasteur, BCG Tokyo and BCG Mexico; O-acetylhomoserine sulfhydrylase	3696776..3698125	Mycobacterium bovis BCG str. Mexico	11811715
YP_005172863.1	CDS	metX	NC_016804.1	3698137	3699276	D	homoserine O-acetyltransferase	3698137..3699276	Mycobacterium bovis BCG str. Mexico	11811716
YP_005172864.1	CDS	BCGMEX_3410	NC_016804.1	3699273	3700004	D	putative methyltransferase	3699273..3700004	Mycobacterium bovis BCG str. Mexico	11811717
YP_005172865.1	CDS	PPE54	NC_016804.1	3700013	3704029	R	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 3555 bp in-frame deletion (RD19) leads to a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv. Differs from Mb3375c by 1aa, A513V and from Rv3343c by several transitions in BCG Pasteur, BCG Tokyo and BCG Mexico; PPE family protein	complement(3700013..3704029)	Mycobacterium bovis BCG str. Mexico	11811718
YP_005172866.1	CDS	PE_PGRS50	NC_016804.1	3704078	3709708	R	In Mycobacterium tuberculosis strain H37Rv, PE_PGRS50 and PE_PGRS49 exists as a single gene. In Mycobacterium bovis, a single base deletion splits PE_PGRS50 into 2 parts, PE_PGRS50a and PE_PGRS50b and a single base deletion leads to PE_PGRS49 and PE_PGRS50b existing as a single product. In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, the first deletion is absent leading to an unique single gene comprising PE_PGRS50 and PE_PGRS49; hypothetical protein	complement(3704078..3709708)	Mycobacterium bovis BCG str. Mexico	11811719
YP_005172867.1	CDS	BCGMEX_3413c	NC_016804.1	3710132	3710389	R	hypothetical protein	complement(3710132..3710389)	Mycobacterium bovis BCG str. Mexico	11811720
YP_005172868.1	CDS	PPE55a	NC_016804.1	3713827	3720117	R	In Mycobacterium tuberculosis strain H37Rv, PPE55 exists as a single gene. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a frameshift due to a single base deletion splits PPE55 into 2 parts, PPE55a and PPE55b. Differs from Rv3347c by many aa substitutions and from Mb3380c by 1 aa, P1089S in BCG Pasteur, BCG Tokyo and BCG Mexico; PPE family protein	complement(3713827..3720117)	Mycobacterium bovis BCG str. Mexico	11811722
YP_005172869.1	CDS	BCGMEX_3416	NC_016804.1	3720697	3721188	D	putative transposase	3720697..3721188	Mycobacterium bovis BCG str. Mexico	11811723
YP_005172870.1	CDS	BCGMEX_3417c	NC_016804.1	3721225	3721965	R	transposase	complement(3721225..3721965)	Mycobacterium bovis BCG str. Mexico	11811724
YP_005172871.1	CDS	PPE56a	NC_016804.1	3732724	3734022	R	In Mycobacterium tuberculosis strain H37Rv, PPE56 exists as a single gene. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, 2 frameshifts due to single base transversion and a single base deletion splits PPE56 into 3 parts, PPE56a, PPE56b and PPE56d. Differs from Rv3350c and Mb3385c by 2aa deletion at position 291 in BCG Pasteur, BCG Tokyo and BCG Mexico; PPE family protein	complement(3732724..3734022)	Mycobacterium bovis BCG str. Mexico	11811727
YP_005172872.1	CDS	BCGMEX_3421c	NC_016804.1	3734266	3735060	R	putative oxidoreductase	complement(3734266..3735060)	Mycobacterium bovis BCG str. Mexico	11811728
YP_005172873.1	CDS	BCGMEX_3422c	NC_016804.1	3735142	3735513	R	putative oxidoreductase	complement(3735142..3735513)	Mycobacterium bovis BCG str. Mexico	11811729
YP_005172874.1	CDS	BCGMEX_3423c	NC_016804.1	3735656	3735916	R	hypothetical protein	complement(3735656..3735916)	Mycobacterium bovis BCG str. Mexico	11811730
YP_005172875.1	CDS	BCGMEX_3424	NC_016804.1	3736031	3736420	D	Differs from Rv3354 by 1aa, A112V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3736031..3736420	Mycobacterium bovis BCG str. Mexico	11811731
YP_005172876.1	CDS	BCGMEX_3425c	NC_016804.1	3736434	3736727	R	hypothetical protein	complement(3736434..3736727)	Mycobacterium bovis BCG str. Mexico	11811732
YP_005172877.1	CDS	folD	NC_016804.1	3736724	3737569	R	Differs from Rv3356c by 1aa, P21Q in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; bifunctional protein: methylenetetrahydrofolate dehydrogenase/ methenyltetrahydrofolate cyclohydrolase	complement(3736724..3737569)	Mycobacterium bovis BCG str. Mexico	11811733
YP_005172878.1	CDS	BCGMEX_3427	NC_016804.1	3737693	3737968	D	hypothetical protein	3737693..3737968	Mycobacterium bovis BCG str. Mexico	11811734
YP_005172879.1	CDS	BCGMEX_3428	NC_016804.1	3737965	3738222	D	hypothetical protein	3737965..3738222	Mycobacterium bovis BCG str. Mexico	11811735
YP_005172880.1	CDS	BCGMEX_3429	NC_016804.1	3738264	3739454	D	putative oxidoreductase	3738264..3739454	Mycobacterium bovis BCG str. Mexico	11811736
YP_005172881.1	CDS	BCGMEX_3430	NC_016804.1	3739571	3739939	D	hypothetical protein	3739571..3739939	Mycobacterium bovis BCG str. Mexico	11811737
YP_005172882.1	CDS	BCGMEX_3431c	NC_016804.1	3739936	3740487	R	hypothetical protein	complement(3739936..3740487)	Mycobacterium bovis BCG str. Mexico	11811738
YP_005172883.1	CDS	BCGMEX_3432c	NC_016804.1	3740494	3741075	R	putative ATP/GTP-binding protein	complement(3740494..3741075)	Mycobacterium bovis BCG str. Mexico	11811739
YP_005172884.1	CDS	BCGMEX_3433c	NC_016804.1	3741056	3741424	R	hypothetical protein	complement(3741056..3741424)	Mycobacterium bovis BCG str. Mexico	11811740
YP_005172885.1	CDS	BCGMEX_3434c	NC_016804.1	3741402	3741794	R	Differs from Rv3364c and Mb3399c, by 1aa, L22P in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(3741402..3741794)	Mycobacterium bovis BCG str. Mexico	11811741
YP_005172886.1	CDS	BCGMEX_3435c	NC_016804.1	3741791	3744421	R	hypothetical protein	complement(3741791..3744421)	Mycobacterium bovis BCG str. Mexico	11811742
YP_005172887.1	CDS	spoU	NC_016804.1	3744657	3745121	D	putative tRNA/rRNA methylase	3744657..3745121	Mycobacterium bovis BCG str. Mexico	11811743
YP_005172888.1	CDS	PE_PGRS51	NC_016804.1	3745488	3747263	D	In Mycobacterium bovis, insertions of 105 bp and of 9 bp lead to longer product compared to the homolog in Mycobacterium tuberculosis strain H37Rv (626 aa versus 588 aa). In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, there is no 105 bp insertion but the 9 bp insertion is presentat codon 404. Differs also from Rv3367 by 1aa, S412G in BCG Pasteur, BCG Tokyo and BCG Mexico; PE PGRS family protein	3745488..3747263	Mycobacterium bovis BCG str. Mexico	11811744
YP_005172889.1	CDS	BCGMEX_3438c	NC_016804.1	3747264	3747908	R	putative oxidoreductase	complement(3747264..3747908)	Mycobacterium bovis BCG str. Mexico	11811745
YP_005172890.1	CDS	BCGMEX_3439	NC_016804.1	3747907	3748341	D	hypothetical protein	3747907..3748341	Mycobacterium bovis BCG str. Mexico	11811746
YP_005172891.1	CDS	dnaE2	NC_016804.1	3748430	3751669	R	Differs from Rv3370c and Mb3405c by 1aa, S527N in BCG Pasteur, BCG Tokyo and BCG Mexico; error-prone DNA polymerase	complement(3748430..3751669)	Mycobacterium bovis BCG str. Mexico	11811747
YP_005172892.1	CDS	BCGMEX_3441	NC_016804.1	3751861	3753201	D	Differs from Rv3371 by 2aa, G339R, V368I in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative diacylglycerol O-acyltransferase	3751861..3753201	Mycobacterium bovis BCG str. Mexico	11811748
YP_005172893.1	CDS	otsB2	NC_016804.1	3753243	3754418	D	putative trehalose-6-phosphate phosphatase	3753243..3754418	Mycobacterium bovis BCG str. Mexico	11811749
YP_005172894.1	CDS	echA18	NC_016804.1	3754655	3755545	D	In Mycobacterium tuberculosis H37Rv, echA18 and echA18' exist as 2 genes. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a single base transversion leads to a single product; putative enoyl-CoA hydratase	3754655..3755545	Mycobacterium bovis BCG str. Mexico	11811750
YP_005172895.1	CDS	amiD	NC_016804.1	3755550	3756977	D	putative amidase	3755550..3756977	Mycobacterium bovis BCG str. Mexico	11811751
YP_005172896.1	CDS	BCGMEX_3445	NC_016804.1	3757085	3757738	D	hypothetical protein	3757085..3757738	Mycobacterium bovis BCG str. Mexico	11811752
YP_005172897.1	CDS	BCGMEX_3446c	NC_016804.1	3757830	3759281	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a frameshift due to a 4 bp to 3 bp substitution leads to a shorter product with a different COOH part compared to its homolog in Mycobacterium tuberculosis strain H37Rv; putative cyclase	complement(3757830..3759281)	Mycobacterium bovis BCG str. Mexico	11811753
YP_005172898.1	CDS	BCGMEX_3447c	NC_016804.1	3759286	3760176	R	Differs from Rv3378c and Mb3412c by 1aa, A137V in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(3759286..3760176)	Mycobacterium bovis BCG str. Mexico	11811754
YP_005172899.1	CDS	dxs2	NC_016804.1	3760185	3761795	R	Differs from Mb3413c by 1aa, T519A, and from Rv3379c by 2aa, T519A and Y196C in BCG Pasteur, BCG Tokyo and BCG Mexico; 1-deoxy-D-xylulose-5-phosphate synthase	complement(3760185..3761795)	Mycobacterium bovis BCG str. Mexico	11811755
YP_005172900.1	CDS	ispH2	NC_016804.1	3762020	3763009	R	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	complement(3762020..3763009)	Mycobacterium bovis BCG str. Mexico	11811756
YP_005172901.1	CDS	idsB	NC_016804.1	3763009	3764061	R	Differs from Rv3383c by 1aa, G132V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative polyprenyl synthetase	complement(3763009..3764061)	Mycobacterium bovis BCG str. Mexico	11811757
YP_005172902.1	CDS	BCGMEX_3451c	NC_016804.1	3764815	3765207	R	hypothetical protein	complement(3764815..3765207)	Mycobacterium bovis BCG str. Mexico	11811758
YP_005172903.1	CDS	BCGMEX_3452c	NC_016804.1	3765207	3765515	R	hypothetical protein	complement(3765207..3765515)	Mycobacterium bovis BCG str. Mexico	11811759
YP_005172904.1	CDS	BCGMEX_3453	NC_016804.1	3765664	3766368	D	putative transposase	3765664..3766368	Mycobacterium bovis BCG str. Mexico	11811760
YP_005172905.1	CDS	BCGMEX_3454	NC_016804.1	3766358	3767035	D	putative transposase	3766358..3767035	Mycobacterium bovis BCG str. Mexico	11811761
YP_005172906.1	CDS	PE_PGRS52	NC_016804.1	3767225	3769477	D	In Mycobacterium bovis and Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, insertions of 60 bp and 78 bp, and deletions of 75 bp and 9 bp, lead to a longer product compared to the homolog in Mycobacterium tuberculosis strain H37Rv (750 aa and 749 aa versus 731 aa). Differs from Mb3420 by 1aa insertion, A205 in BCG Pasteur, BCG Tokyo and BCG Mexico; PE PGRS family protein	3767225..3769477	Mycobacterium bovis BCG str. Mexico	11811762
YP_005172907.1	CDS	BCGMEX_3456c	NC_016804.1	3769548	3770420	R	Differs from Mb3421c by 1aa, P172L in Mycobacteirum tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative dehydrogenase	complement(3769548..3770420)	Mycobacterium bovis BCG str. Mexico	11811763
YP_005172908.1	CDS	lpqD	NC_016804.1	3770494	3771204	D	putative lipoprotein	3770494..3771204	Mycobacterium bovis BCG str. Mexico	11811764
YP_005172909.1	CDS	acrA1	NC_016804.1	3771250	3773202	D	short-chain dehydrogenase	3771250..3773202	Mycobacterium bovis BCG str. Mexico	11811765
YP_005172910.1	CDS	cmaA1	NC_016804.1	3773203	3774066	R	Differs from Rv3392c by 1aa, S112N in Mycobacteirum bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; cyclopropane-fatty-acyl-phospholipid synthase 1	complement(3773203..3774066)	Mycobacterium bovis BCG str. Mexico	11811766
YP_005172911.1	CDS	iunH	NC_016804.1	3774090	3775016	D	putative nucleoside hydrolase	3774090..3775016	Mycobacterium bovis BCG str. Mexico	11811767
YP_005172912.1	CDS	BCGMEX_3461c	NC_016804.1	3775071	3776654	R	hypothetical protein	complement(3775071..3776654)	Mycobacterium bovis BCG str. Mexico	11811768
YP_005172913.1	CDS	BCGMEX_3462c	NC_016804.1	3776651	3777265	R	Differs from Rv3395c by 2aa, V3A, M104V in Mycobacteirum bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(3776651..3777265)	Mycobacterium bovis BCG str. Mexico	11811769
YP_005172914.1	CDS	BCGMEX_3463	NC_016804.1	3777348	3777974	D	hypothetical protein	3777348..3777974	Mycobacterium bovis BCG str. Mexico	11811770
YP_005172915.1	CDS	guaA	NC_016804.1	3778130	3779707	R	GMP synthase	complement(3778130..3779707)	Mycobacterium bovis BCG str. Mexico	11811771
YP_005172916.1	CDS	phyA	NC_016804.1	3779719	3780627	R	putative phytoene synthase	complement(3779719..3780627)	Mycobacterium bovis BCG str. Mexico	11811772
YP_005172917.1	CDS	idsA1	NC_016804.1	3780656	3781735	R	putative geranylgeranyl pyrophosphate synthase	complement(3780656..3781735)	Mycobacterium bovis BCG str. Mexico	11811773
YP_005172918.1	CDS	BCGMEX_3467	NC_016804.1	3781758	3782804	D	Differs from Rv3399 by 1aa, E330A in Mycobacterium tuberculosis CDC1551, Mycobacteirum bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative S-adenosyl-L-methionine-dependent methyltransferase	3781758..3782804	Mycobacterium bovis BCG str. Mexico	11811774
YP_005172919.1	CDS	BCGMEX_3468	NC_016804.1	3782868	3783656	D	hypothetical protein	3782868..3783656	Mycobacterium bovis BCG str. Mexico	11811775
YP_005172920.1	CDS	BCGMEX_3469	NC_016804.1	3783671	3786031	D	Differs from Mb3434 by 1aa, R658H in Mycobacterium bovis BCG Pasteur and BCG Mexico, and by 2aa, R658H, R750L in Mycobacterium bovis BCG Tokyo; putative glycosyl hydrolase	3783671..3786031	Mycobacterium bovis BCG str. Mexico	11811776
YP_005172921.1	CDS	BCGMEX_3470c	NC_016804.1	3786706	3787758	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a single base transversion leads to a shorter product. Differs from Mb3436c by 1aa, R154C in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(3786706..3787758)	Mycobacterium bovis BCG str. Mexico	11811777
YP_005172922.1	CDS	BCGMEX_3471c	NC_016804.1	3788129	3789730	R	hypothetical protein	complement(3788129..3789730)	Mycobacterium bovis BCG str. Mexico	11811778
YP_005172923.1	CDS	BCGMEX_3472c	NC_016804.1	3789747	3790451	R	hypothetical protein	complement(3789747..3790451)	Mycobacterium bovis BCG str. Mexico	11811779
YP_005172924.1	CDS	BCGMEX_3473c	NC_016804.1	3790569	3791135	R	putative transcriptional regulatory protein, TetR family	complement(3790569..3791135)	Mycobacterium bovis BCG str. Mexico	11811780
YP_005172925.1	CDS	BCGMEX_3474	NC_016804.1	3791197	3792084	D	putative dioxygenase	3791197..3792084	Mycobacterium bovis BCG str. Mexico	11811781
YP_005172926.1	CDS	BCGMEX_3475	NC_016804.1	3792119	3792418	D	hypothetical protein	3792119..3792418	Mycobacterium bovis BCG str. Mexico	11811782
YP_005172927.1	CDS	BCGMEX_3476	NC_016804.1	3792415	3792825	D	Differs from Rv3408 by 1aa, L46S in Mycobacteirum bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3792415..3792825	Mycobacterium bovis BCG str. Mexico	11811783
YP_005172928.1	CDS	choD	NC_016804.1	3792858	3794594	R	putative cholesterol oxidase	complement(3792858..3794594)	Mycobacterium bovis BCG str. Mexico	11811784
YP_005172929.1	CDS	guaB3	NC_016804.1	3794650	3795777	R	inosine-5'-monophosphate dehydrogenase	complement(3794650..3795777)	Mycobacterium bovis BCG str. Mexico	11811785
YP_005172930.1	CDS	guaB2	NC_016804.1	3795797	3797386	R	inosine-5'-monophosphate dehydrogenase	complement(3795797..3797386)	Mycobacterium bovis BCG str. Mexico	11811786
YP_005172931.1	CDS	BCGMEX_3480	NC_016804.1	3797593	3798003	D	hypothetical protein	3797593..3798003	Mycobacterium bovis BCG str. Mexico	11811787
YP_005172932.1	CDS	BCGMEX_3481c	NC_016804.1	3798013	3798912	R	hypothetical protein	complement(3798013..3798912)	Mycobacterium bovis BCG str. Mexico	11811788
YP_005172933.1	CDS	sigD	NC_016804.1	3798905	3799543	R	putative RNA polymerase sigma-D factor	complement(3798905..3799543)	Mycobacterium bovis BCG str. Mexico	11811789
YP_005172934.1	CDS	BCGMEX_3483c	NC_016804.1	3799561	3800388	R	hypothetical protein	complement(3799561..3800388)	Mycobacterium bovis BCG str. Mexico	11811790
YP_005172935.1	CDS	whiB3	NC_016804.1	3800759	3801067	D	transcriptional regulatory protein whiB-like protein	3800759..3801067	Mycobacterium bovis BCG str. Mexico	11811791
YP_005172936.1	CDS	groEL2	NC_016804.1	3801139	3802758	R	60 kDa chaperonin 2	complement(3801139..3802758)	Mycobacterium bovis BCG str. Mexico	11811792
YP_005172937.1	CDS	groES	NC_016804.1	3802853	3803155	R	10 kDa chaperonin	complement(3802853..3803155)	Mycobacterium bovis BCG str. Mexico	11811793
YP_005172938.1	CDS	gcp	NC_016804.1	3803422	3804456	R	putative O-sialoglycoprotein endopeptidase	complement(3803422..3804456)	Mycobacterium bovis BCG str. Mexico	11811794
YP_005172939.1	CDS	rimI	NC_016804.1	3804453	3804929	R	ribosomal-protein-alanine acetyltransferase	complement(3804453..3804929)	Mycobacterium bovis BCG str. Mexico	11811795
YP_005172940.1	CDS	BCGMEX_3489c	NC_016804.1	3804926	3805561	R	hypothetical protein	complement(3804926..3805561)	Mycobacterium bovis BCG str. Mexico	11811796
YP_005172941.1	CDS	BCGMEX_3490c	NC_016804.1	3805558	3806064	R	hypothetical protein	complement(3805558..3806064)	Mycobacterium bovis BCG str. Mexico	11811797
YP_005172942.1	CDS	alr	NC_016804.1	3806061	3807287	R	putative alanine racemase	complement(3806061..3807287)	Mycobacterium bovis BCG str. Mexico	11811798
YP_005172943.1	CDS	BCGMEX_3492c	NC_016804.1	3807581	3807943	R	hypothetical protein	complement(3807581..3807943)	Mycobacterium bovis BCG str. Mexico	11811799
YP_005172944.1	CDS	PPE57	NC_016804.1	3808106	3808642	D	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a large deletion of 4926 bp (RD6) leads to the loss of the COOH part of PPE57, and the following CDSs, PPE58, Rv3427c, Rv3428c and the NH2-part of PPE59 compared to Mycobacterium tuberculosis strain H37Rv; PPE family protein	3808106..3808642	Mycobacterium bovis BCG str. Mexico	11811800
YP_005172945.1	CDS	BCGMEX_3494c	NC_016804.1	3808583	3809746	R	Differs from Mb3460c by 1aa, R233H in Mycobacteirum tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transposase	complement(3808583..3809746)	Mycobacterium bovis BCG str. Mexico	11811801
YP_005172946.1	CDS	BCGMEX_3495c	NC_016804.1	3810235	3811080	R	putative transposase	complement(3810235..3811080)	Mycobacterium bovis BCG str. Mexico	11811802
YP_005172947.1	CDS	gadB	NC_016804.1	3811313	3812695	R	glutamate decarboxylase	complement(3811313..3812695)	Mycobacterium bovis BCG str. Mexico	11811803
YP_005172948.1	CDS	BCGMEX_3497c	NC_016804.1	3812733	3814151	R	Differs from Mb3463c by 1aa, A436 deleted, and from Rv3433c by 2aa, A436 deleted, A442S in Mycobacterium bovis BCG Pasteur and BCG Mexico.Differs from Rv3433c by 1aa, A442S in Mycobacterium bovis BCG Tokyo; hypothetical protein	complement(3812733..3814151)	Mycobacterium bovis BCG str. Mexico	11811804
YP_005172949.1	CDS	BCGMEX_3498c	NC_016804.1	3814153	3814866	R	Differs from Mb3464c by 1aa, A193T in Mycobacteirum tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	complement(3814153..3814866)	Mycobacterium bovis BCG str. Mexico	11811805
YP_005172950.1	CDS	BCGMEX_3499c	NC_016804.1	3814877	3815731	R	putative transmembrane protein	complement(3814877..3815731)	Mycobacterium bovis BCG str. Mexico	11811806
YP_005172951.1	CDS	glmS	NC_016804.1	3815953	3817827	R	glucosamine--fructose-6-phosphate aminotransferase	complement(3815953..3817827)	Mycobacterium bovis BCG str. Mexico	11811807
YP_005172952.1	CDS	BCGMEX_3501	NC_016804.1	3817849	3818325	D	Differs from Rv3437 by 1aa P84L in Mycobacteirum bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	3817849..3818325	Mycobacterium bovis BCG str. Mexico	11811808
YP_005172953.1	CDS	BCGMEX_3502	NC_016804.1	3818335	3819177	D	hypothetical protein	3818335..3819177	Mycobacterium bovis BCG str. Mexico	11811809
YP_005172954.1	CDS	BCGMEX_3503c	NC_016804.1	3819197	3820600	R	hypothetical protein	complement(3819197..3820600)	Mycobacterium bovis BCG str. Mexico	11811810
YP_005172955.1	CDS	BCGMEX_3504c	NC_016804.1	3820603	3820914	R	hypothetical protein	complement(3820603..3820914)	Mycobacterium bovis BCG str. Mexico	11811811
YP_005172956.1	CDS	glmM	NC_016804.1	3820962	3822308	R	phosphoglucosamine mutase	complement(3820962..3822308)	Mycobacterium bovis BCG str. Mexico	11811812
YP_005172957.1	CDS	rpsI	NC_016804.1	3822433	3822888	R	30S ribosomal protein S9	complement(3822433..3822888)	Mycobacterium bovis BCG str. Mexico	11811813
YP_005172958.1	CDS	rplM	NC_016804.1	3822885	3823328	R	50S ribosomal protein L13	complement(3822885..3823328)	Mycobacterium bovis BCG str. Mexico	11811814
YP_005172959.1	CDS	esxT	NC_016804.1	3823561	3823863	R	Esat-6 like protein	complement(3823561..3823863)	Mycobacterium bovis BCG str. Mexico	11811815
YP_005172960.1	CDS	esxU	NC_016804.1	3823884	3824261	R	Esat-6 like protein	complement(3823884..3824261)	Mycobacterium bovis BCG str. Mexico	11811816
YP_005172961.1	CDS	BCGMEX_3510c	NC_016804.1	3824254	3825468	R	hypothetical protein	complement(3824254..3825468)	Mycobacterium bovis BCG str. Mexico	11811817
YP_005172962.1	CDS	BCGMEX_3511c	NC_016804.1	3825465	3829175	R	Differs from Rv3444c by 1 aa, G1082S and Mb3477c by 1 aa G1159S in BCG Pasteur, BCG Tokyo and BCG Mexico; putative ESX-4 secretion system protein	complement(3825465..3829175)	Mycobacterium bovis BCG str. Mexico	11811818
YP_005172963.1	CDS	BCGMEX_3512	NC_016804.1	3829289	3830692	D	Differs from Mb3478 by 1aa A265D in Mycobacteirum tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative integral membrane protein	3829289..3830692	Mycobacterium bovis BCG str. Mexico	11811819
YP_005172964.1	CDS	BCGMEX_3513	NC_016804.1	3830689	3832056	D	putative secreted serine protease	3830689..3832056	Mycobacterium bovis BCG str. Mexico	11811820
YP_005172965.1	CDS	BCGMEX_3514c	NC_016804.1	3832021	3833433	R	hypothetical protein	complement(3832021..3833433)	Mycobacterium bovis BCG str. Mexico	11811821
YP_005172966.1	CDS	cut3	NC_016804.1	3833554	3834339	D	Differs from Rv3451 and Mb3481 by deletion of 1aa,262R in BCG Pasteur, BCG Tokyo and BCG Mexico; putative cutinase	3833554..3834339	Mycobacterium bovis BCG str. Mexico	11811822
YP_005172967.1	CDS	cut4	NC_016804.1	3834386	3835066	D	putative cutinase	3834386..3835066	Mycobacterium bovis BCG str. Mexico	11811823
YP_005172968.1	CDS	BCGMEX_3517	NC_016804.1	3835338	3837023	D	In Mycobacterium tuberculosis H37Rv, Rv3453 and Rv3454 exist as 2 genes. In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a single base deletion results in a single product that is more similar to Rv3454. Differs from Mb3483 by 1aa, V328I in BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	3835338..3837023	Mycobacterium bovis BCG str. Mexico	11811824
YP_005172969.1	CDS	truA	NC_016804.1	3836985	3837755	R	tRNA pseudouridine synthase A	complement(3836985..3837755)	Mycobacterium bovis BCG str. Mexico	11811825
YP_005172970.1	CDS	rplQ	NC_016804.1	3837823	3838365	R	50S ribosomal protein L17	complement(3837823..3838365)	Mycobacterium bovis BCG str. Mexico	11811826
YP_005172971.1	CDS	rpoA	NC_016804.1	3838397	3839440	R	DNA-directed RNA polymerase subunit alpha	complement(3838397..3839440)	Mycobacterium bovis BCG str. Mexico	11811827
YP_005172972.1	CDS	rpsD	NC_016804.1	3839591	3840196	R	30S ribosomal protein S4	complement(3839591..3840196)	Mycobacterium bovis BCG str. Mexico	11811828
YP_005172973.1	CDS	rpsK	NC_016804.1	3840205	3840624	R	Differs from Rv3459c by 1aa, N135K in Mycobacteirum bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; 30S ribosomal protein S11	complement(3840205..3840624)	Mycobacterium bovis BCG str. Mexico	11811829
YP_005172974.1	CDS	rpsM	NC_016804.1	3840628	3841002	R	30S ribosomal protein S13	complement(3840628..3841002)	Mycobacterium bovis BCG str. Mexico	11811830
YP_005172975.1	CDS	rpmJ	NC_016804.1	3841218	3841331	R	50S ribosomal protein L36	complement(3841218..3841331)	Mycobacterium bovis BCG str. Mexico	11811831
YP_005172976.1	CDS	infA	NC_016804.1	3841364	3841585	R	translation initiation factor IF-1	complement(3841364..3841585)	Mycobacterium bovis BCG str. Mexico	11811832
YP_005172977.1	CDS	BCGMEX_3526	NC_016804.1	3841839	3842696	D	hypothetical protein	3841839..3842696	Mycobacterium bovis BCG str. Mexico	11811833
YP_005172978.1	CDS	rmlB1	NC_016804.1	3842769	3843764	D	dTDP-glucose 4,6-dehydratase	3842769..3843764	Mycobacterium bovis BCG str. Mexico	11811834
YP_005172979.1	CDS	rmlC	NC_016804.1	3843766	3844374	D	putative dTDP-4-dehydrorhamnose 3,5-epimerase	3843766..3844374	Mycobacterium bovis BCG str. Mexico	11811835
YP_005172980.1	CDS	BCGMEX_3529	NC_016804.1	3844457	3845125	D	Differs from Rv3466 by 4aa, T56A, T63A, L91R, I131V in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3844457..3845125	Mycobacterium bovis BCG str. Mexico	11811836
YP_005172981.1	CDS	BCGMEX_3530	NC_016804.1	3844896	3845849	D	Differs from Rv3467 by 6aa, E134K, G245A, D262G, R275H, K276N, E315K in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3844896..3845849	Mycobacterium bovis BCG str. Mexico	11811837
YP_005172982.1	CDS	rmlB2	NC_016804.1	3845907	3847001	R	Differs from Rv3468c by 1aa, V62I in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; putative dTDP-glucose 4,6-dehydratase	complement(3845907..3847001)	Mycobacterium bovis BCG str. Mexico	11811838
YP_005172983.1	CDS	mhpE	NC_016804.1	3847005	3848015	R	Differs from Rv3469c and Mb3498c by 1aa, G253D in BCG Pasteur, BCG Tokyo and BCG Mexico; 4-hydroxy-2-oxovalerate aldolase	complement(3847005..3848015)	Mycobacterium bovis BCG str. Mexico	11811839
YP_005172984.1	CDS	ilvB2	NC_016804.1	3848076	3849734	R	Differs from Mb3499c by 1aa, G421E in Mycobacterium tuberculosis H37Rv, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative acetolactate synthase	complement(3848076..3849734)	Mycobacterium bovis BCG str. Mexico	11811840
YP_005172985.1	CDS	BCGMEX_3534c	NC_016804.1	3849740	3850273	R	Differs from Mb3500c by 1aa, C155W in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(3849740..3850273)	Mycobacterium bovis BCG str. Mexico	11811841
YP_005172986.1	CDS	BCGMEX_3535	NC_016804.1	3850294	3850800	D	hypothetical protein	3850294..3850800	Mycobacterium bovis BCG str. Mexico	11811842
YP_005172987.1	CDS	bpoA	NC_016804.1	3850880	3851665	R	putative peroxidase	complement(3850880..3851665)	Mycobacterium bovis BCG str. Mexico	11811843
YP_005172988.1	CDS	kgtP	NC_016804.1	3851945	3853294	R	Differs from Rv3476c by 2aa, F81L, V144A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative dicarboxylic acid transport integral membrane protein	complement(3851945..3853294)	Mycobacterium bovis BCG str. Mexico	11811844
YP_005172989.1	CDS	PE31	NC_016804.1	3853667	3853963	D	Differs from Rv3477 by 1aa, A26V in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; PE family protein	3853667..3853963	Mycobacterium bovis BCG str. Mexico	11811845
YP_005172990.1	CDS	PPE60	NC_016804.1	3854000	3855181	D	PPE family protein	3854000..3855181	Mycobacterium bovis BCG str. Mexico	11811846
YP_005172991.1	CDS	BCGMEX_3540	NC_016804.1	3855394	3856695	D	In Mycobacterium tuberculosis strain H37Rv, Rv3479 exists as a single gene. In Mycobacterium bovis BCG Pasteur, and BCG Tokyo, BCG Mexico and Mycobacterium bovis, a 713 bp deletion (RD18) splits Rv3479 into 2 parts, Mb3507 and Mb3508. Differs from Rv3479 by 1aa, R174L in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3855394..3856695	Mycobacterium bovis BCG str. Mexico	11811847
YP_005172992.1	CDS	BCGMEX_3541	NC_016804.1	3856700	3857746	D	In Mycobacterium tuberculosis strain H37Rv, Rv3479 exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a 713 bp deletion (RD18) splits Rv3479 into 2 parts, Mb3507 and Mb3508. Differs from Rv3479 by 1aa, N344T in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3856700..3857746	Mycobacterium bovis BCG str. Mexico	11811848
YP_005172993.1	CDS	BCGMEX_3542c	NC_016804.1	3857770	3859263	R	In Mycobacterium tuberculosis strain H37Rv (Rv3480c), BCG Pasteur, BCG Tokyo and BCG Mexico exists as a single gene. In Mycobacterium bovis, a frameshift due to a 2 bp deletion splits Rv3480c into 2 parts, Mb3509c and Mb3510c. Differs from Rv3480c and Mb3510c by 1aa, N205D in BCG Pasteur, BCG Tokyo and BCG Mexico; putative diacylglycerol O-acyltransferase	complement(3857770..3859263)	Mycobacterium bovis BCG str. Mexico	11811849
YP_005172994.1	CDS	BCGMEX_3543c	NC_016804.1	3859354	3860043	R	putative integral membrane protein	complement(3859354..3860043)	Mycobacterium bovis BCG str. Mexico	11811850
YP_005172995.1	CDS	BCGMEX_3544c	NC_016804.1	3859478	3860968	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a single base insertion leads to frameshift and longer product of 496 aa compared to Rv3482c, len: 260 aa; hypothetical protein	complement(3859478..3860968)	Mycobacterium bovis BCG str. Mexico	11811851
YP_005172996.1	CDS	BCGMEX_3545c	NC_016804.1	3861012	3861674	R	hypothetical protein	complement(3861012..3861674)	Mycobacterium bovis BCG str. Mexico	11811852
YP_005172997.1	CDS	cpsA	NC_016804.1	3861940	3863478	D	hypothetical protein	3861940..3863478	Mycobacterium bovis BCG str. Mexico	11811853
YP_005172998.1	CDS	BCGMEX_3547c	NC_016804.1	3863484	3864428	R	Short-chain dehydrogenase/reductase family	complement(3863484..3864428)	Mycobacterium bovis BCG str. Mexico	11811854
YP_005172999.1	CDS	BCGMEX_3548	NC_016804.1	3864634	3865083	D	hypothetical protein	3864634..3865083	Mycobacterium bovis BCG str. Mexico	11811855
YP_005173000.1	CDS	lipF	NC_016804.1	3865036	3865869	R	putative esterase/lipase	complement(3865036..3865869)	Mycobacterium bovis BCG str. Mexico	11811856
YP_005173001.1	CDS	BCGMEX_3550	NC_016804.1	3866529	3866852	D	Differs from Rv3488 by 1aa, R98G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3866529..3866852	Mycobacterium bovis BCG str. Mexico	11811857
YP_005173002.1	CDS	BCGMEX_3551	NC_016804.1	3866934	3867098	D	hypothetical protein	3866934..3867098	Mycobacterium bovis BCG str. Mexico	11811858
YP_005173003.1	CDS	otsA	NC_016804.1	3867098	3868600	D	Differs from Rv3490 by 1aa, L334V in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; putative alpha,alpha-trehalose-phosphate synthase	3867098..3868600	Mycobacterium bovis BCG str. Mexico	11811859
YP_005173004.1	CDS	BCGMEX_3553	NC_016804.1	3868752	3869330	D	hypothetical protein	3868752..3869330	Mycobacterium bovis BCG str. Mexico	11811860
YP_005173005.1	CDS	BCGMEX_3554c	NC_016804.1	3869327	3869809	R	putative MCE associated protein	complement(3869327..3869809)	Mycobacterium bovis BCG str. Mexico	11811861
YP_005173006.1	CDS	BCGMEX_3555c	NC_016804.1	3869809	3870537	R	putative MCE associated alanine and valine rich protein	complement(3869809..3870537)	Mycobacterium bovis BCG str. Mexico	11811862
YP_005173007.1	CDS	mce4F	NC_016804.1	3870537	3872231	R	Differs from Rv3494c by 1aa, G245D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; MCE-family protein	complement(3870537..3872231)	Mycobacterium bovis BCG str. Mexico	11811863
YP_005173008.1	CDS	lprN	NC_016804.1	3872242	3873396	R	putative MCE-family lipoprotein	complement(3872242..3873396)	Mycobacterium bovis BCG str. Mexico	11811864
YP_005173009.1	CDS	mce4D	NC_016804.1	3873393	3874748	R	MCE-family protein	complement(3873393..3874748)	Mycobacterium bovis BCG str. Mexico	11811865
YP_005173010.1	CDS	mce4C	NC_016804.1	3874745	3875818	R	Differs from Mb3527c and Rv3497c by 1aa, P46T in BCG Pasteur, BCG Tokyo and BCG Mexico; MCE-family protein	complement(3874745..3875818)	Mycobacterium bovis BCG str. Mexico	11811866
YP_005173011.1	CDS	mce4B	NC_016804.1	3875808	3876860	R	MCE-family protein	complement(3875808..3876860)	Mycobacterium bovis BCG str. Mexico	11811867
YP_005173012.1	CDS	mce4A	NC_016804.1	3876860	3878062	R	MCE-family protein	complement(3876860..3878062)	Mycobacterium bovis BCG str. Mexico	11811868
YP_005173013.1	CDS	yrbE4B	NC_016804.1	3878082	3878924	R	putative integral membrane protein	complement(3878082..3878924)	Mycobacterium bovis BCG str. Mexico	11811869
YP_005173014.1	CDS	yrbE4A	NC_016804.1	3878959	3879723	R	putative integral membrane protein	complement(3878959..3879723)	Mycobacterium bovis BCG str. Mexico	11811870
YP_005173015.1	CDS	BCGMEX_3564c	NC_016804.1	3879949	3880902	R	putative short-chain type dehydrogenase/reductase	complement(3879949..3880902)	Mycobacterium bovis BCG str. Mexico	11811871
YP_005173016.1	CDS	fdxD	NC_016804.1	3880927	3881118	R	putative ferredoxin	complement(3880927..3881118)	Mycobacterium bovis BCG str. Mexico	11811872
YP_005173017.1	CDS	fadE26	NC_016804.1	3881333	3882535	D	putative acyl-CoA dehydrogenase	3881333..3882535	Mycobacterium bovis BCG str. Mexico	11811873
YP_005173018.1	CDS	fadE27	NC_016804.1	3882560	3883681	D	Differs from Rv3505 by 1aa V218A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative acyl-CoA dehydrogenase	3882560..3883681	Mycobacterium bovis BCG str. Mexico	11811874
YP_005173019.1	CDS	fadD17	NC_016804.1	3883752	3885260	D	putative fatty-acid-CoA synthetase	3883752..3885260	Mycobacterium bovis BCG str. Mexico	11811875
YP_005173020.1	CDS	PE_PGRS53	NC_016804.1	3885431	3889549	D	In Mycobacterium bovis, insertions of 18 bp, 72 bp and 9 bp, and deletions of 90 bp, 54 bp and 18 bp, and Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, insertions of 18 bp, 81 bp and 9 bp, and deletions of 90 bp, 27 bp and 18 bp, leads to a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (1360 aa and 1372 aa versus 1381 aa). Differs from Mb3537 by 2 insertions of 9aa and 3aa and by 1aa, N599D. Differs from Rv3507 by several insertions, deletions and by 2aa, N599D, G742D in BCG Pasteur and BCG Mexico. Differs from Mb3537 by 2 insertions of 9aa and 3aa in BCG Tokyo. Differs form Rv3507 by several insertions, deletions and by 1aa, G742D in BCG Tokyo.; PE-PGRS family protein	3885431..3889549	Mycobacterium bovis BCG str. Mexico	11811876
YP_005173021.1	CDS	PE_PGRS54	NC_016804.1	3889840	3896124	D	In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, several insertions lead to a longer product compared to its homolog in Mycobacterium bovis (2094 aa in BCG Pasteur and BCG Mexico, and 2055 aa in BCG Tokyo versus 1460 aa). The PE_PGRS54 gene of BCG Tokyo (6153bp) is 132bp shorter than that of BCG Pasteur and BCG Mexico (6285bp). There are two repeats of 465bp in BCG Tokyo and one such repeat in BCG Pasteur and BCG Mexico, as well as three repeats of 552bp in BCG Tokyo and four repeats in BCG Pasteur and BCG Mexico; PE-PGRS family protein	3889840..3896124	Mycobacterium bovis BCG str. Mexico	11811877
YP_005173022.1	CDS	ilvX	NC_016804.1	3896291	3897838	R	putative acetohydroxyacid synthase	complement(3896291..3897838)	Mycobacterium bovis BCG str. Mexico	11811878
YP_005173023.1	CDS	BCGMEX_3572c	NC_016804.1	3897835	3898671	R	hypothetical protein	complement(3897835..3898671)	Mycobacterium bovis BCG str. Mexico	11811879
YP_005173024.1	CDS	PE_PGRS55	NC_016804.1	3899031	3904463	D	In Mycobacterium tuberculosis H37Rv, PE_PGRS55 and PE_PGRS56 exist as 2 genes. In Mycobacterium bovis, a 344bp insertion results in a single product which is more similar to PE_PGRS55. In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico two deletions of 138bp and 246bp lead to a shorter product compared to its homolog Mycobacterium bovis (1810 aa versus 1938 aa). Also differs from Mb3541 by 3aa, D628A, D743A and D857A. In BCG Tokyo, the PE_PGRS55 gene (5088bp, 1695aa) is 345bp shorter than that of BCG Pasteur and BCG Mexico (5433bp). As 345bp is the length of a repeat in the gene, the difference reflected the copy number of BCG strains; PE-PGRS family protein	3899031..3904463	Mycobacterium bovis BCG str. Mexico	11811880
YP_005173025.1	CDS	fadD18	NC_016804.1	3904592	3905248	R	putative fatty-acid-CoA ligase	complement(3904592..3905248)	Mycobacterium bovis BCG str. Mexico	11811881
YP_005173026.1	CDS	PE_PGRS57	NC_016804.1	3905294	3908521	D	In Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a deletion of 111 bp and an insertion of 360 bp (361bp in BCG Tokyo) lead to a longer product compared to its homolog Mycobacterium bovis. Also differs from Mb3543 by 2aa, S80L and T93A in BCG Pasteur and BCG Mexico; PE-PGRS family protein	3905294..3908521	Mycobacterium bovis BCG str. Mexico	11811882
YP_005173027.1	CDS	fadD19	NC_016804.1	3909082	3910728	R	putative fatty-acid-CoA ligase	complement(3909082..3910728)	Mycobacterium bovis BCG str. Mexico	11811883
YP_005173028.1	CDS	echA19	NC_016804.1	3910802	3911593	D	Differs from Rv3516 by 1aa, D86G in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Enoyl-CoA hydratase	3910802..3911593	Mycobacterium bovis BCG str. Mexico	11811884
YP_005173029.1	CDS	BCGMEX_3578	NC_016804.1	3911689	3912528	D	hypothetical protein	3911689..3912528	Mycobacterium bovis BCG str. Mexico	11811885
YP_005173030.1	CDS	cyp142b	NC_016804.1	3912583	3913164	R	putative cytochrome P450 142	complement(3912583..3913164)	Mycobacterium bovis BCG str. Mexico	11811886
YP_005173031.1	CDS	cyp142a	NC_016804.1	3913161	3913778	R	In Mycobacterium tuberculosis strain H37Rv, cyp142 exists as a single gene. In Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a single base deletion splits cyp142 into 2 parts, cyp142a and cyp142b; putative cytochrome P450 142	complement(3913161..3913778)	Mycobacterium bovis BCG str. Mexico	11811887
YP_005173032.1	CDS	BCGMEX_3581	NC_016804.1	3913807	3914517	D	hypothetical protein	3913807..3914517	Mycobacterium bovis BCG str. Mexico	11811888
YP_005173033.1	CDS	BCGMEX_3582c	NC_016804.1	3914582	3915625	R	putative coenzyme F420-dependent oxidoreductase	complement(3914582..3915625)	Mycobacterium bovis BCG str. Mexico	11811889
YP_005173034.1	CDS	BCGMEX_3583	NC_016804.1	3915778	3916689	D	Differs from Rv3521 by 1aa D295N in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3915778..3916689	Mycobacterium bovis BCG str. Mexico	11811890
YP_005173035.1	CDS	BCGMEX_3584	NC_016804.1	3916705	3917769	D	Differs from Rv3522 by 1aa I324T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	3916705..3917769	Mycobacterium bovis BCG str. Mexico	11811891
YP_005173036.1	CDS	BCGMEX_3585	NC_016804.1	3917786	3918970	D	acetyl-CoA acetyltransferase	3917786..3918970	Mycobacterium bovis BCG str. Mexico	11811892
YP_005173037.1	CDS	BCGMEX_3586	NC_016804.1	3919012	3920043	D	hypothetical protein	3919012..3920043	Mycobacterium bovis BCG str. Mexico	11811893
YP_005173038.1	CDS	BCGMEX_3587c	NC_016804.1	3920057	3920581	R	putative siderophore-binding protein	complement(3920057..3920581)	Mycobacterium bovis BCG str. Mexico	11811894
YP_005173039.1	CDS	BCGMEX_3588	NC_016804.1	3920696	3921856	D	putative oxidoreductase	3920696..3921856	Mycobacterium bovis BCG str. Mexico	11811895
YP_005173040.1	CDS	BCGMEX_3589	NC_016804.1	3921862	3922311	D	hypothetical protein	3921862..3922311	Mycobacterium bovis BCG str. Mexico	11811896
YP_005173041.1	CDS	BCGMEX_3590c	NC_016804.1	3922736	3923449	R	hypothetical protein	complement(3922736..3923449)	Mycobacterium bovis BCG str. Mexico	11811897
YP_005173042.1	CDS	BCGMEX_3591c	NC_016804.1	3924141	3925295	R	hypothetical protein	complement(3924141..3925295)	Mycobacterium bovis BCG str. Mexico	11811898
YP_005173043.1	CDS	BCGMEX_3592c	NC_016804.1	3925295	3926077	R	short-chain dehydrogenase	complement(3925295..3926077)	Mycobacterium bovis BCG str. Mexico	11811899
YP_005173044.1	CDS	BCGMEX_3593c	NC_016804.1	3926074	3927201	R	hypothetical protein	complement(3926074..3927201)	Mycobacterium bovis BCG str. Mexico	11811900
YP_005173045.1	CDS	PPE61	NC_016804.1	3927600	3928820	D	PPE family protein	3927600..3928820	Mycobacterium bovis BCG str. Mexico	11811901
YP_005173046.1	CDS	PPE62	NC_016804.1	3928962	3930710	R	PPE family protein	complement(3928962..3930710)	Mycobacterium bovis BCG str. Mexico	11811902
YP_005173047.1	CDS	BCGMEX_3596c	NC_016804.1	3930809	3931849	R	4-hydroxy-2-oxovalerate aldolase	complement(3930809..3931849)	Mycobacterium bovis BCG str. Mexico	11811903
YP_005173048.1	CDS	BCGMEX_3597c	NC_016804.1	3931846	3932757	R	acetaldehyde dehydrogenase	complement(3931846..3932757)	Mycobacterium bovis BCG str. Mexico	11811904
YP_005173049.1	CDS	BCGMEX_3598c	NC_016804.1	3932768	3933553	R	putative hydratase	complement(3932768..3933553)	Mycobacterium bovis BCG str. Mexico	11811905
YP_005173050.1	CDS	BCGMEX_3599	NC_016804.1	3933626	3935317	D	3-ketosteroid-delta-1-dehydrogenase	3933626..3935317	Mycobacterium bovis BCG str. Mexico	11811906
YP_005173051.1	CDS	BCGMEX_3600	NC_016804.1	3935319	3936179	D	putative dehydrogenase	3935319..3936179	Mycobacterium bovis BCG str. Mexico	11811907
YP_005173052.1	CDS	PPE63	NC_016804.1	3936316	3937755	D	PPE family protein	3936316..3937755	Mycobacterium bovis BCG str. Mexico	11811908
YP_005173053.1	CDS	ltp2	NC_016804.1	3937756	3938916	R	Lipid-transfer protein	complement(3937756..3938916)	Mycobacterium bovis BCG str. Mexico	11811909
YP_005173054.1	CDS	BCGMEX_3603c	NC_016804.1	3938916	3939305	R	hypothetical protein	complement(3938916..3939305)	Mycobacterium bovis BCG str. Mexico	11811910
YP_005173055.1	CDS	BCGMEX_3604c	NC_016804.1	3939302	3940237	R	hypothetical protein	complement(3939302..3940237)	Mycobacterium bovis BCG str. Mexico	11811911
YP_005173056.1	CDS	fadE29	NC_016804.1	3940234	3941397	R	putative acyl-CoA dehydrogenase	complement(3940234..3941397)	Mycobacterium bovis BCG str. Mexico	11811912
YP_005173057.1	CDS	fadE28	NC_016804.1	3941382	3942401	R	putative acyl-CoA dehydrogenase	complement(3941382..3942401)	Mycobacterium bovis BCG str. Mexico	11811913
YP_005173058.1	CDS	cyp125	NC_016804.1	3942401	3943702	R	putative cytochrome P450 125	complement(3942401..3943702)	Mycobacterium bovis BCG str. Mexico	11811914
YP_005173059.1	CDS	fadA5	NC_016804.1	3943814	3944989	D	acetyl-CoA acetyltransferase	3943814..3944989	Mycobacterium bovis BCG str. Mexico	11811915
YP_005173060.1	CDS	BCGMEX_3609	NC_016804.1	3945101	3945556	D	hypothetical protein	3945101..3945556	Mycobacterium bovis BCG str. Mexico	11811916
YP_005173061.1	CDS	BCGMEX_3610c	NC_016804.1	3945639	3946553	R	Differs from Rv3548c by 1aa V218M in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative short-chain type dehydrogenase	complement(3945639..3946553)	Mycobacterium bovis BCG str. Mexico	11811917
YP_005173062.1	CDS	BCGMEX_3611c	NC_016804.1	3946576	3947355	R	Short-chain type dehydrogenase	complement(3946576..3947355)	Mycobacterium bovis BCG str. Mexico	11811918
YP_005173063.1	CDS	echA20	NC_016804.1	3947410	3948153	D	Enoyl-CoA hydratase	3947410..3948153	Mycobacterium bovis BCG str. Mexico	11811919
YP_005173064.1	CDS	BCGMEX_3613	NC_016804.1	3948153	3949031	D	Differs from Rv3551 by 1aa, S7A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative CoA-transferase subunit alpha	3948153..3949031	Mycobacterium bovis BCG str. Mexico	11811920
YP_005173065.1	CDS	BCGMEX_3614	NC_016804.1	3949028	3949780	D	putative CoA-transferase subunit beta	3949028..3949780	Mycobacterium bovis BCG str. Mexico	11811921
YP_005173066.1	CDS	BCGMEX_3615	NC_016804.1	3949878	3950945	D	putative oxidoreductase	3949878..3950945	Mycobacterium bovis BCG str. Mexico	11811922
YP_005173067.1	CDS	fdxB	NC_016804.1	3950942	3952999	D	putative electron transfer protein	3950942..3952999	Mycobacterium bovis BCG str. Mexico	11811923
YP_005173068.1	CDS	BCGMEX_3617c	NC_016804.1	3953087	3953956	R	Differs from Rv3555c by 1aa R268W in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(3953087..3953956)	Mycobacterium bovis BCG str. Mexico	11811924
YP_005173069.1	CDS	fadA6	NC_016804.1	3954061	3955221	R	acetyl-CoA acetyltransferase	complement(3954061..3955221)	Mycobacterium bovis BCG str. Mexico	11811925
YP_005173070.1	CDS	BCGMEX_3619c	NC_016804.1	3955286	3955888	R	putative transcriptional regulatory protein, TetR-family	complement(3955286..3955888)	Mycobacterium bovis BCG str. Mexico	11811926
YP_005173071.1	CDS	PPE64	NC_016804.1	3956237	3957895	D	PPE family protein	3956237..3957895	Mycobacterium bovis BCG str. Mexico	11811927
YP_005173072.1	CDS	BCGMEX_3621c	NC_016804.1	3957904	3958692	R	Differs from Rv3559c by 1aa V222A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative oxidoreductase	complement(3957904..3958692)	Mycobacterium bovis BCG str. Mexico	11811928
YP_005173073.1	CDS	fadE30	NC_016804.1	3958689	3959846	R	putative acyl-CoA dehydrogenase	complement(3958689..3959846)	Mycobacterium bovis BCG str. Mexico	11811929
YP_005173074.1	CDS	fadD3	NC_016804.1	3959894	3961417	D	Differs from Rv3561 by 1aa N405T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Fatty-acid-CoA ligase	3959894..3961417	Mycobacterium bovis BCG str. Mexico	11811930
YP_005173075.1	CDS	fadE31	NC_016804.1	3961418	3962551	D	putative acyl-CoA dehydrogenase	3961418..3962551	Mycobacterium bovis BCG str. Mexico	11811931
YP_005173076.1	CDS	fadE32	NC_016804.1	3962548	3963507	D	Differs from Rv3563 by 2aa R105Q and S275W in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative acyl-CoA dehydrogenase	3962548..3963507	Mycobacterium bovis BCG str. Mexico	11811932
YP_005173077.1	CDS	fadE33	NC_016804.1	3963504	3964460	D	putative acyl-CoA dehydrogenase	3963504..3964460	Mycobacterium bovis BCG str. Mexico	11811933
YP_005173078.1	CDS	aspB	NC_016804.1	3964457	3965623	D	aspartate aminotransferase	3964457..3965623	Mycobacterium bovis BCG str. Mexico	11811934
YP_005173079.1	CDS	nat	NC_016804.1	3965588	3966439	R	arylamine N-acetyltransferase	complement(3965588..3966439)	Mycobacterium bovis BCG str. Mexico	11811935
YP_005173080.1	CDS	BCGMEX_3629c	NC_016804.1	3966424	3966690	R	hypothetical protein	complement(3966424..3966690)	Mycobacterium bovis BCG str. Mexico	11811936
YP_005173081.1	CDS	BCGMEX_3630c	NC_016804.1	3966976	3967539	R	Differs from Rv3567c by 1aa T179I in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative oxidoreductase	complement(3966976..3967539)	Mycobacterium bovis BCG str. Mexico	11811937
YP_005173082.1	CDS	bphC	NC_016804.1	3967554	3968456	R	Differs from Mb3599c by 1aa Q177R in Mycobacterium tuberculosis, BCG Pasteur, BCG Tokyo and BCG Mexico; putative biphenyl-2,3-diol 1,2-dioxygenase	complement(3967554..3968456)	Mycobacterium bovis BCG str. Mexico	11811938
YP_005173083.1	CDS	bphD	NC_016804.1	3968453	3969328	R	2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase	complement(3968453..3969328)	Mycobacterium bovis BCG str. Mexico	11811939
YP_005173084.1	CDS	BCGMEX_3633c	NC_016804.1	3969343	3970527	R	Differs from Rv3570c by 1aa D18N in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative oxidoreductase	complement(3969343..3970527)	Mycobacterium bovis BCG str. Mexico	11811940
YP_005173085.1	CDS	hmp	NC_016804.1	3970674	3971750	D	putative hemoglobin-related protein	3970674..3971750	Mycobacterium bovis BCG str. Mexico	11811941
YP_005173086.1	CDS	BCGMEX_3635	NC_016804.1	3971768	3972298	D	hypothetical protein	3971768..3972298	Mycobacterium bovis BCG str. Mexico	11811942
YP_005173087.1	CDS	fadE34	NC_016804.1	3972334	3974469	R	putative acyl-CoA dehydrogenase	complement(3972334..3974469)	Mycobacterium bovis BCG str. Mexico	11811943
YP_005173088.1	CDS	BCGMEX_3637	NC_016804.1	3974741	3975340	D	transcriptional regulatory protein, TetR family	3974741..3975340	Mycobacterium bovis BCG str. Mexico	11811944
YP_005173089.1	CDS	BCGMEX_3638c	NC_016804.1	3975346	3976425	R	transcriptional regulatory protein, LacI family	complement(3975346..3976425)	Mycobacterium bovis BCG str. Mexico	11811945
YP_005173090.1	CDS	lppH	NC_016804.1	3976615	3977328	D	Differs from Rv3576 by 1aa N118D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative lipoprotein	3976615..3977328	Mycobacterium bovis BCG str. Mexico	11811946
YP_005173091.1	CDS	BCGMEX_3640	NC_016804.1	3977519	3978385	D	hypothetical protein	3977519..3978385	Mycobacterium bovis BCG str. Mexico	11811947
YP_005173092.1	CDS	arsB2	NC_016804.1	3978399	3979640	D	Differs from Rv3578 by 1aa S319A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative arsenical pump integral membrane protein	3978399..3979640	Mycobacterium bovis BCG str. Mexico	11811948
YP_005173093.1	CDS	BCGMEX_3642c	NC_016804.1	3979682	3980650	R	Differs from Rv3579c by 1aa , A302E in Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico. Mb3610c is longer due to frameshift and differs by 1aa V178M in Mycobacterium bovis; putative tRNA/rRNA methyltransferase	complement(3979682..3980650)	Mycobacterium bovis BCG str. Mexico	11811949
YP_005173094.1	CDS	cysS	NC_016804.1	3980651	3982060	R	cysteinyl-tRNA synthetase	complement(3980651..3982060)	Mycobacterium bovis BCG str. Mexico	11811950
YP_005173095.1	CDS	ispF	NC_016804.1	3982125	3982604	R	2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase	complement(3982125..3982604)	Mycobacterium bovis BCG str. Mexico	11811951
YP_005173096.1	CDS	ispD	NC_016804.1	3982601	3983296	R	Differs from Mb3613c by 1aa T92A in Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	complement(3982601..3983296)	Mycobacterium bovis BCG str. Mexico	11811952
YP_005173097.1	CDS	BCGMEX_3646c	NC_016804.1	3983313	3983801	R	transcriptional regulator, CarD family protein	complement(3983313..3983801)	Mycobacterium bovis BCG str. Mexico	11811953
YP_005173098.1	CDS	lpqE	NC_016804.1	3984086	3984634	D	putative lipoprotein	3984086..3984634	Mycobacterium bovis BCG str. Mexico	11811954
YP_005173099.1	CDS	radA	NC_016804.1	3984700	3986142	D	DNA repair protein	3984700..3986142	Mycobacterium bovis BCG str. Mexico	11811955
YP_005173100.1	CDS	disA	NC_016804.1	3986147	3987223	D	Differs from Rv3586 by 1 aa, D345E in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; DNA integrity scanning protein	3986147..3987223	Mycobacterium bovis BCG str. Mexico	11811956
YP_005173101.1	CDS	BCGMEX_3650c	NC_016804.1	3987224	3988015	R	Shorter than Rv3587c and Mb3618c by 1aa, P at 240 in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(3987224..3988015)	Mycobacterium bovis BCG str. Mexico	11811957
YP_005173102.1	CDS	canB	NC_016804.1	3988124	3988747	R	Differs from Mb3619c by 1aa I79T in Mycobacterium tuberculosis, BCG Pasteur, BCG Tokyo and BCG Mexico; carbonic anhydrase	complement(3988124..3988747)	Mycobacterium bovis BCG str. Mexico	11811958
YP_005173103.1	CDS	mutY	NC_016804.1	3988746	3989660	D	putative adenine glycosylase	3988746..3989660	Mycobacterium bovis BCG str. Mexico	11811959
YP_005173104.1	CDS	PE_PGRS58	NC_016804.1	3989657	3991411	R	PE-PGRS family protein	complement(3989657..3991411)	Mycobacterium bovis BCG str. Mexico	11811960
YP_005173105.1	CDS	BCGMEX_3654c	NC_016804.1	3991522	3992295	R	putative hydrolase	complement(3991522..3992295)	Mycobacterium bovis BCG str. Mexico	11811961
YP_005173106.1	CDS	BCGMEX_3655	NC_016804.1	3992310	3992627	D	hypothetical protein	3992310..3992627	Mycobacterium bovis BCG str. Mexico	11811962
YP_005173107.1	CDS	lpqF	NC_016804.1	3992605	3993963	D	Differs from Rv3593 by 2 aa, V159A, S186N in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative lipoprotein	3992605..3993963	Mycobacterium bovis BCG str. Mexico	11811963
YP_005173108.1	CDS	BCGMEX_3657	NC_016804.1	3994110	3994937	D	hypothetical protein	3994110..3994937	Mycobacterium bovis BCG str. Mexico	11811964
YP_005173109.1	CDS	PE_PGRS59	NC_016804.1	3994851	3996329	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a single base deletion and a 27bp insertion (*-GCGCGCCGGGGCCACCGTTTCCGCCGG), lead to a longer product with a different COOH part compared to its homolog in Mycobacterium tuberculosis (492 aa versus 439 aa); PE PGRS family protein	complement(3994851..3996329)	Mycobacterium bovis BCG str. Mexico	11811965
YP_005173110.1	CDS	clpC	NC_016804.1	3996437	3998983	R	putative ATP-dependent Clp protease, ATP-binding subunit	complement(3996437..3998983)	Mycobacterium bovis BCG str. Mexico	11811966
YP_005173111.1	CDS	lsr2	NC_016804.1	3999260	3999598	R	protein Lsr2	complement(3999260..3999598)	Mycobacterium bovis BCG str. Mexico	11811967
YP_005173112.1	CDS	lysS	NC_016804.1	3999702	4001219	R	lysyl-tRNA synthetase	complement(3999702..4001219)	Mycobacterium bovis BCG str. Mexico	11811968
YP_005173113.1	CDS	BCGMEX_3662c	NC_016804.1	4001320	4002138	R	Pantothenate kinase type III	complement(4001320..4002138)	Mycobacterium bovis BCG str. Mexico	11811969
YP_005173114.1	CDS	panD	NC_016804.1	4002141	4002560	R	aspartate 1-decarboxylase	complement(4002141..4002560)	Mycobacterium bovis BCG str. Mexico	11811970
YP_005173115.1	CDS	panC	NC_016804.1	4002560	4003489	R	Pantoate--beta-alanine ligase	complement(4002560..4003489)	Mycobacterium bovis BCG str. Mexico	11811971
YP_005173116.1	CDS	BCGMEX_3665c	NC_016804.1	4003486	4004397	R	hypothetical protein	complement(4003486..4004397)	Mycobacterium bovis BCG str. Mexico	11811972
YP_005173117.1	CDS	BCGMEX_3666c	NC_016804.1	4004582	4005775	R	Differs from Rv3604c by G153V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein rich in alanine and arginine and proline	complement(4004582..4005775)	Mycobacterium bovis BCG str. Mexico	11811973
YP_005173118.1	CDS	BCGMEX_3667c	NC_016804.1	4005984	4006460	R	putative secreted protein	complement(4005984..4006460)	Mycobacterium bovis BCG str. Mexico	11811974
YP_005173119.1	CDS	folK	NC_016804.1	4006460	4007026	R	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase	complement(4006460..4007026)	Mycobacterium bovis BCG str. Mexico	11811975
YP_005173120.1	CDS	folB	NC_016804.1	4007023	4007424	R	putative dihydroneopterin aldolase	complement(4007023..4007424)	Mycobacterium bovis BCG str. Mexico	11811976
YP_005173121.1	CDS	folP1	NC_016804.1	4007417	4008259	R	dihydropteroate synthase 1	complement(4007417..4008259)	Mycobacterium bovis BCG str. Mexico	11811977
YP_005173122.1	CDS	folE	NC_016804.1	4008256	4008864	R	GTP cyclohydrolase I	complement(4008256..4008864)	Mycobacterium bovis BCG str. Mexico	11811978
YP_005173123.1	CDS	ftsH	NC_016804.1	4008880	4011162	R	cell division protein ftsH-like protein	complement(4008880..4011162)	Mycobacterium bovis BCG str. Mexico	11811979
YP_005173124.1	CDS	BCGMEX_3673	NC_016804.1	4011229	4011882	D	similar to Rv3611 in BCG Pasteur and BCG Mexico. In Mycobacterium bovis and BCG Tokyo, a 111bp deletion leads to a shorter product compared to its homolog in Mycobacterium tuberculosis (180 aa versus 217aa); putative arginine and proline rich protein	4011229..4011882	Mycobacterium bovis BCG str. Mexico	11811980
YP_005173125.1	CDS	BCGMEX_3674c	NC_016804.1	4011797	4012126	R	hypothetical protein	complement(4011797..4012126)	Mycobacterium bovis BCG str. Mexico	11811981
YP_005173126.1	CDS	BCGMEX_3675c	NC_016804.1	4012160	4012321	R	hypothetical protein	complement(4012160..4012321)	Mycobacterium bovis BCG str. Mexico	11811982
YP_005173127.1	CDS	BCGMEX_3676c	NC_016804.1	4012421	4012975	R	hypothetical protein	complement(4012421..4012975)	Mycobacterium bovis BCG str. Mexico	11811983
YP_005173128.1	CDS	BCGMEX_3677c	NC_016804.1	4013091	4013402	R	hypothetical protein	complement(4013091..4013402)	Mycobacterium bovis BCG str. Mexico	11811984
YP_005173129.1	CDS	BCGMEX_3678c	NC_016804.1	4013476	4014654	R	Differs from Rv3616c by 2aa, V4A, I192T and Mb3646c by 2aa, V4A, V153A in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(4013476..4014654)	Mycobacterium bovis BCG str. Mexico	11811985
YP_005173130.1	CDS	lpqG	NC_016804.1	4015120	4015635	D	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a large 5894 bp deletion (RD8) leads to a shorter product with a different NH2 part compared to its homolog in Mycobacterium tuberculosis strain H37Rv (171 aa versus 240 aa); putative lipoprotein	4015120..4015635	Mycobacterium bovis BCG str. Mexico	11811986
YP_005173131.1	CDS	hpt	NC_016804.1	4015640	4016290	R	hypoxanthine-guanine phosphoribosyltransferase	complement(4015640..4016290)	Mycobacterium bovis BCG str. Mexico	11811987
YP_005173132.1	CDS	tilS	NC_016804.1	4016287	4017258	R	tRNA(Ile)-lysidine synthetase	complement(4016287..4017258)	Mycobacterium bovis BCG str. Mexico	11811988
YP_005173133.1	CDS	BCGMEX_3682c	NC_016804.1	4017237	4018289	R	hypothetical protein	complement(4017237..4018289)	Mycobacterium bovis BCG str. Mexico	11811989
YP_005173134.1	CDS	BCGMEX_3683c	NC_016804.1	4018286	4019671	R	Differs from Rv3627c by 2 aa, V45A, V81A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(4018286..4019671)	Mycobacterium bovis BCG str. Mexico	11811990
YP_005173135.1	CDS	ppa	NC_016804.1	4019809	4020297	D	inorganic pyrophosphatase	4019809..4020297	Mycobacterium bovis BCG str. Mexico	11811991
YP_005173136.1	CDS	BCGMEX_3685c	NC_016804.1	4020343	4021440	R	putative integral membrane protein	complement(4020343..4021440)	Mycobacterium bovis BCG str. Mexico	11811992
YP_005173137.1	CDS	BCGMEX_3686	NC_016804.1	4021561	4022856	D	Differs from Rv3630 by 1aa, T40A in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative integral membrane protein	4021561..4022856	Mycobacterium bovis BCG str. Mexico	11811993
YP_005173138.1	CDS	BCGMEX_3687	NC_016804.1	4022900	4023625	D	putative glycosyl transferase	4022900..4023625	Mycobacterium bovis BCG str. Mexico	11811994
YP_005173139.1	CDS	BCGMEX_3688	NC_016804.1	4023622	4023966	D	hypothetical protein	4023622..4023966	Mycobacterium bovis BCG str. Mexico	11811995
YP_005173140.1	CDS	BCGMEX_3689	NC_016804.1	4024177	4025052	D	hypothetical protein	4024177..4025052	Mycobacterium bovis BCG str. Mexico	11811996
YP_005173141.1	CDS	galE1	NC_016804.1	4025053	4025997	R	UDP-glucose 4-epimerase	complement(4025053..4025997)	Mycobacterium bovis BCG str. Mexico	11811997
YP_005173142.1	CDS	BCGMEX_3691	NC_016804.1	4026020	4027795	D	putative transmembrane protein	4026020..4027795	Mycobacterium bovis BCG str. Mexico	11811998
YP_005173143.1	CDS	BCGMEX_3692	NC_016804.1	4028138	4028485	D	putative transposase	4028138..4028485	Mycobacterium bovis BCG str. Mexico	11811999
YP_005173144.1	CDS	BCGMEX_3693	NC_016804.1	4028870	4029370	D	putative transposase	4028870..4029370	Mycobacterium bovis BCG str. Mexico	11812000
YP_005173145.1	CDS	BCGMEX_3694	NC_016804.1	4029370	4030116	D	transposase	4029370..4030116	Mycobacterium bovis BCG str. Mexico	11812001
YP_005173146.1	CDS	BCGMEX_3695c	NC_016804.1	4030270	4030836	R	Differs from Rv3639c by 1 aa, N53K in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(4030270..4030836)	Mycobacterium bovis BCG str. Mexico	11812002
YP_005173147.1	CDS	BCGMEX_3696c	NC_016804.1	4030906	4032135	R	Differs from Rv3640c by 1aa, E296G in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; putative transposase	complement(4030906..4032135)	Mycobacterium bovis BCG str. Mexico	11812003
YP_005173148.1	CDS	fic	NC_016804.1	4032311	4032946	R	putative cell filamentation protein	complement(4032311..4032946)	Mycobacterium bovis BCG str. Mexico	11812004
YP_005173149.1	CDS	BCGMEX_3698c	NC_016804.1	4032957	4033151	R	hypothetical protein	complement(4032957..4033151)	Mycobacterium bovis BCG str. Mexico	11812005
YP_005173150.1	CDS	BCGMEX_3699	NC_016804.1	4033546	4033737	D	hypothetical protein	4033546..4033737	Mycobacterium bovis BCG str. Mexico	11812006
YP_005173151.1	CDS	BCGMEX_3700c	NC_016804.1	4033902	4035107	R	DNA polymerase III subunit delta	complement(4033902..4035107)	Mycobacterium bovis BCG str. Mexico	11812008
YP_005173152.1	CDS	BCGMEX_3701	NC_016804.1	4035193	4036842	D	putative transmembrane protein	4035193..4036842	Mycobacterium bovis BCG str. Mexico	11812009
YP_005173153.1	CDS	topA	NC_016804.1	4036839	4039643	R	Differs from Rv3546c and Mb3670c by 1aa, F628L in BCG Pasteur, BCG Tokyo and BCG Mexico; DNA topoisomerase I	complement(4036839..4039643)	Mycobacterium bovis BCG str. Mexico	11812010
YP_005173154.1	CDS	BCGMEX_3703c	NC_016804.1	4039996	4040574	R	hypothetical protein	complement(4039996..4040574)	Mycobacterium bovis BCG str. Mexico	11812011
YP_005173155.1	CDS	cspA	NC_016804.1	4040714	4040917	R	putative cold shock protein	complement(4040714..4040917)	Mycobacterium bovis BCG str. Mexico	11812012
YP_005173156.1	CDS	BCGMEX_3705	NC_016804.1	4041167	4043482	D	Differs from Rv3649 by 2aa, P93L, D677G, and from Mb3673 by D677G in BCG Pasteur, BCG Tokyo and BCG Mexico; putative helicase	4041167..4043482	Mycobacterium bovis BCG str. Mexico	11812013
YP_005173157.1	CDS	PE33	NC_016804.1	4043619	4043903	D	PE-PGRS family protein	4043619..4043903	Mycobacterium bovis BCG str. Mexico	11812014
YP_005173158.1	CDS	BCGMEX_3707	NC_016804.1	4044227	4045264	D	hypothetical protein	4044227..4045264	Mycobacterium bovis BCG str. Mexico	11812015
YP_005173159.1	CDS	BCGMEX_3708c	NC_016804.1	4045779	4046024	R	hypothetical protein	complement(4045779..4046024)	Mycobacterium bovis BCG str. Mexico	11812017
YP_005173160.1	CDS	PE_PGRS60	NC_016804.1	4046018	4046332	D	PE PGRS family protein	4046018..4046332	Mycobacterium bovis BCG str. Mexico	11812018
YP_005173161.1	CDS	PE_PGRS61	NC_016804.1	4046326	4047021	D	In Mycobacterium tuberculosis strain H37Rv, a frameshift due to an in-frame insertion of 126 bp leads to a longer product than in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico. Shorter than Mb3677 due to 18 bp in-frame deletion, removes 6 codons; PE PGRS family protein	4046326..4047021	Mycobacterium bovis BCG str. Mexico	11812019
YP_005173162.1	CDS	BCGMEX_3711c	NC_016804.1	4047138	4047461	R	hypothetical protein	complement(4047138..4047461)	Mycobacterium bovis BCG str. Mexico	11812020
YP_005173163.1	CDS	BCGMEX_3712c	NC_016804.1	4047478	4047777	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a single base deletion introducing a premature stop codon, leads to a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (99 aa versus 125 aa); hypothetical protein	complement(4047478..4047777)	Mycobacterium bovis BCG str. Mexico	11812021
YP_005173164.1	CDS	BCGMEX_3713c	NC_016804.1	4047801	4048007	R	hypothetical protein	complement(4047801..4048007)	Mycobacterium bovis BCG str. Mexico	11812022
YP_005173165.1	CDS	BCGMEX_3714c	NC_016804.1	4048017	4048592	R	membrane protein	complement(4048017..4048592)	Mycobacterium bovis BCG str. Mexico	11812023
YP_005173166.1	CDS	BCGMEX_3715c	NC_016804.1	4048616	4049416	R	putative transmembrane protein	complement(4048616..4049416)	Mycobacterium bovis BCG str. Mexico	11812024
YP_005173167.1	CDS	BCGMEX_3716c	NC_016804.1	4049413	4050471	R	hypothetical protein	complement(4049413..4050471)	Mycobacterium bovis BCG str. Mexico	11812025
YP_005173168.1	CDS	BCGMEX_3717c	NC_016804.1	4050573	4051625	R	Differs from Rv3660c by 1aa, L30P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(4050573..4051625)	Mycobacterium bovis BCG str. Mexico	11812026
YP_005173169.1	CDS	BCGMEX_3718	NC_016804.1	4052125	4052988	D	Differs from Rv3661 by 1aa, P40S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	4052125..4052988	Mycobacterium bovis BCG str. Mexico	11812027
YP_005173170.1	CDS	BCGMEX_3719c	NC_016804.1	4053743	4054513	R	Differs from Rv3662c by 1aa, T34A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(4053743..4054513)	Mycobacterium bovis BCG str. Mexico	11812028
YP_005173171.1	CDS	dppD	NC_016804.1	4054510	4056156	R	putative dipeptide-transport ATP-binding protein ABC transporter	complement(4054510..4056156)	Mycobacterium bovis BCG str. Mexico	11812029
YP_005173172.1	CDS	dppC	NC_016804.1	4056153	4056953	R	putative dipeptide-transport integral membrane protein ABC transporter	complement(4056153..4056953)	Mycobacterium bovis BCG str. Mexico	11812030
YP_005173173.1	CDS	dppB	NC_016804.1	4057009	4057935	R	putative dipeptide-transport integral membrane protein ABC transporter	complement(4057009..4057935)	Mycobacterium bovis BCG str. Mexico	11812031
YP_005173174.1	CDS	dppA	NC_016804.1	4057937	4059562	R	Differs from Rv3666c by 2aa, R4Q, Q443R and to Mb3690c by 1aa, E451G in BCG Pasteur, BCG Tokyo and BCG Mexico; putative periplasmic dipeptide-binding lipoprotein	complement(4057937..4059562)	Mycobacterium bovis BCG str. Mexico	11812032
YP_005173175.1	CDS	BCGMEX_3724	NC_016804.1	4059648	4060004	D	hypothetical protein	4059648..4060004	Mycobacterium bovis BCG str. Mexico	11812033
YP_005173176.1	CDS	acs	NC_016804.1	4060270	4062225	D	Differs from Mb3691 by 1aa G61E in BCG Pasteur and BCG Mexico; acetyl-CoA synthetase	4060270..4062225	Mycobacterium bovis BCG str. Mexico	11812034
YP_005173177.1	CDS	BCGMEX_3726c	NC_016804.1	4062261	4062959	R	putative protease	complement(4062261..4062959)	Mycobacterium bovis BCG str. Mexico	11812035
YP_005173178.1	CDS	BCGMEX_3727	NC_016804.1	4063305	4063823	D	putative transmembrane protein	4063305..4063823	Mycobacterium bovis BCG str. Mexico	11812036
YP_005173179.1	CDS	ephE	NC_016804.1	4063824	4064807	D	putative epoxide hydrolase	4063824..4064807	Mycobacterium bovis BCG str. Mexico	11812037
YP_005173180.1	CDS	BCGMEX_3729c	NC_016804.1	4064800	4065993	R	Differs from Rv3671c by 3aa, T165N, L359F, V363I and from Mb3695c by 3aa, T165N and L359F in BCG Pasteur, BCG Tokyo and BCG Mexico; putative membrane-associated serine protease	complement(4064800..4065993)	Mycobacterium bovis BCG str. Mexico	11812038
YP_005173181.1	CDS	BCGMEX_3730c	NC_016804.1	4065999	4066820	R	hypothetical protein	complement(4065999..4066820)	Mycobacterium bovis BCG str. Mexico	11812039
YP_005173182.1	CDS	BCGMEX_3731c	NC_016804.1	4066952	4067635	R	putative membrane-anchored thioredoxin-like protein	complement(4066952..4067635)	Mycobacterium bovis BCG str. Mexico	11812040
YP_005173183.1	CDS	nth	NC_016804.1	4067635	4068372	R	endonuclease III	complement(4067635..4068372)	Mycobacterium bovis BCG str. Mexico	11812041
YP_005173184.1	CDS	BCGMEX_3733	NC_016804.1	4068480	4068857	D	hypothetical protein	4068480..4068857	Mycobacterium bovis BCG str. Mexico	11812042
YP_005173185.1	CDS	BCGMEX_3734	NC_016804.1	4068956	4069630	D	Differs from Rv3676 and Mb 3700 by 2aa, P47L, K178E in Mycobacterium bovis BCG Pasteur and BCG Mexico. Differs from Rv3676 and Mb3700 by 2aa, E178K, V184A in Mycobacterium bovis BCG Tokyo; putative transcriptional regulatory protein, crp/fnr-family	4068956..4069630	Mycobacterium bovis BCG str. Mexico	11812043
YP_005173186.1	CDS	BCGMEX_3735c	NC_016804.1	4069736	4070530	R	putative hydrolase	complement(4069736..4070530)	Mycobacterium bovis BCG str. Mexico	11812044
YP_005173187.1	CDS	BCGMEX_3736c	NC_016804.1	4070537	4070992	R	hypothetical protein	complement(4070537..4070992)	Mycobacterium bovis BCG str. Mexico	11812045
YP_005173188.1	CDS	BCGMEX_3737c	NC_016804.1	4071008	4071169	R	hypothetical protein	complement(4071008..4071169)	Mycobacterium bovis BCG str. Mexico	11812046
YP_005173189.1	CDS	BCGMEX_3738	NC_016804.1	4071254	4072276	D	putative ATPase	4071254..4072276	Mycobacterium bovis BCG str. Mexico	11812047
YP_005173190.1	CDS	BCGMEX_3739	NC_016804.1	4072273	4073433	D	putative anion transporter ATPase	4072273..4073433	Mycobacterium bovis BCG str. Mexico	11812048
YP_005173191.1	CDS	whiB4	NC_016804.1	4073676	4074032	R	putative transcriptional regulatory protein whiB-like protein	complement(4073676..4074032)	Mycobacterium bovis BCG str. Mexico	11812049
YP_005173192.1	CDS	ponA2	NC_016804.1	4074394	4076826	D	Differs from Rv3682 and MT3784 by 1aa, R434G in Mycobacterium bovis BCG Mexico; putative bifunctional membrane-associated penicillin-binding protein 1A/1B	4074394..4076826	Mycobacterium bovis BCG str. Mexico	11812050
YP_005173193.1	CDS	BCGMEX_3742	NC_016804.1	4076895	4077854	D	hypothetical protein	4076895..4077854	Mycobacterium bovis BCG str. Mexico	11812051
YP_005173194.1	CDS	BCGMEX_3743	NC_016804.1	4077917	4078957	D	putative lyase	4077917..4078957	Mycobacterium bovis BCG str. Mexico	11812052
YP_005173195.1	CDS	cyp137	NC_016804.1	4079773	4081203	R	Differs from Rv3685c by 1aa, Q136E in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative cytochrome P450 137	complement(4079773..4081203)	Mycobacterium bovis BCG str. Mexico	11812054
YP_005173196.1	CDS	BCGMEX_3745c	NC_016804.1	4081229	4081561	R	hypothetical protein	complement(4081229..4081561)	Mycobacterium bovis BCG str. Mexico	11812055
YP_005173197.1	CDS	BCGMEX_3746c	NC_016804.1	4081801	4082046	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, truncation at the 5' start due to a single base transversion leads to a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (81 aa versus 122 aa); hypothetical protein	complement(4081801..4082046)	Mycobacterium bovis BCG str. Mexico	11812056
YP_005173198.1	CDS	BCGMEX_3747c	NC_016804.1	4082371	4082835	R	hypothetical protein	complement(4082371..4082835)	Mycobacterium bovis BCG str. Mexico	11812057
YP_005173199.1	CDS	BCGMEX_3748	NC_016804.1	4082835	4084190	D	Differs from Rv3689 by 1aa, L119V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	4082835..4084190	Mycobacterium bovis BCG str. Mexico	11812058
YP_005173200.1	CDS	BCGMEX_3749	NC_016804.1	4084217	4084870	D	hypothetical protein	4084217..4084870	Mycobacterium bovis BCG str. Mexico	11812059
YP_005173201.1	CDS	BCGMEX_3750	NC_016804.1	4084996	4085997	D	hypothetical protein	4084996..4085997	Mycobacterium bovis BCG str. Mexico	11812060
YP_005173202.1	CDS	moxR2	NC_016804.1	4085994	4087070	D	putative methanol dehydrogenase transcriptional regulatory protein	4085994..4087070	Mycobacterium bovis BCG str. Mexico	11812061
YP_005173203.1	CDS	BCGMEX_3752	NC_016804.1	4087204	4088526	D	membrane protein	4087204..4088526	Mycobacterium bovis BCG str. Mexico	11812063
YP_005173204.1	CDS	BCGMEX_3753c	NC_016804.1	4088600	4089592	R	putative transmembrane protein	complement(4088600..4089592)	Mycobacterium bovis BCG str. Mexico	11812064
YP_005173205.1	CDS	BCGMEX_3754	NC_016804.1	4089684	4090616	D	membrane protein	4089684..4090616	Mycobacterium bovis BCG str. Mexico	11812065
YP_005173206.1	CDS	glpK	NC_016804.1	4090680	4092236	R	In Mycobacterium tuberculosis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, glpK exists as a single gene. In Mycobacterium bovis, a frameshift due to a single base insertion, splits glpK into 2 parts, glpKa and glpKb and removes activity. Differs from Rv3696c by 2aa, A462V and insertion G192, and from Mycobacterium bovis (gplKb) by 1aa G262A; glycerol kinase	complement(4090680..4092236)	Mycobacterium bovis BCG str. Mexico	11812066
YP_005173207.1	CDS	BCGMEX_3756c	NC_016804.1	4092286	4092723	R	Differs from Rv3697c by 1aa, R34G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; membrane protein	complement(4092286..4092723)	Mycobacterium bovis BCG str. Mexico	11812067
YP_005173208.1	CDS	BCGMEX_3757c	NC_016804.1	4092720	4092944	R	hypothetical protein	complement(4092720..4092944)	Mycobacterium bovis BCG str. Mexico	11812068
YP_005173209.1	CDS	BCGMEX_3758	NC_016804.1	4092974	4094503	D	Differs from Rv3698 by 3aa, I66M, R233P, A288V and from Mb3724 by 1aa, A288V in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	4092974..4094503	Mycobacterium bovis BCG str. Mexico	11812069
YP_005173210.1	CDS	BCGMEX_3759	NC_016804.1	4094525	4095226	D	hypothetical protein	4094525..4095226	Mycobacterium bovis BCG str. Mexico	11812070
YP_005173211.1	CDS	BCGMEX_3760c	NC_016804.1	4095229	4096401	R	hypothetical protein	complement(4095229..4096401)	Mycobacterium bovis BCG str. Mexico	11812071
YP_005173212.1	CDS	BCGMEX_3761c	NC_016804.1	4096432	4097397	R	hypothetical protein	complement(4096432..4097397)	Mycobacterium bovis BCG str. Mexico	11812072
YP_005173213.1	CDS	BCGMEX_3762c	NC_016804.1	4097394	4098095	R	hypothetical protein	complement(4097394..4098095)	Mycobacterium bovis BCG str. Mexico	11812073
YP_005173214.1	CDS	BCGMEX_3763c	NC_016804.1	4098095	4099372	R	hypothetical protein	complement(4098095..4099372)	Mycobacterium bovis BCG str. Mexico	11812074
YP_005173215.1	CDS	gshA	NC_016804.1	4099369	4100667	R	glutamate--cysteine ligase	complement(4099369..4100667)	Mycobacterium bovis BCG str. Mexico	11812075
YP_005173216.1	CDS	BCGMEX_3765c	NC_016804.1	4100799	4101443	R	hypothetical protein	complement(4100799..4101443)	Mycobacterium bovis BCG str. Mexico	11812076
YP_005173217.1	CDS	BCGMEX_3766c	NC_016804.1	4101572	4101961	R	hypothetical protein	complement(4101572..4101961)	Mycobacterium bovis BCG str. Mexico	11812077
YP_005173218.1	CDS	BCGMEX_3767c	NC_016804.1	4102072	4102392	R	hypothetical protein	complement(4102072..4102392)	Mycobacterium bovis BCG str. Mexico	11812078
YP_005173219.1	CDS	BCGMEX_3768c	NC_016804.1	4102511	4103521	R	hypothetical protein	complement(4102511..4103521)	Mycobacterium bovis BCG str. Mexico	11812079
YP_005173220.1	CDS	asd	NC_016804.1	4103661	4104698	R	aspartate-semialdehyde dehydrogenase	complement(4103661..4104698)	Mycobacterium bovis BCG str. Mexico	11812080
YP_005173221.1	CDS	ask	NC_016804.1	4104699	4105964	R	aspartokinase	complement(4104699..4105964)	Mycobacterium bovis BCG str. Mexico	11812081
YP_005173222.1	CDS	leuA	NC_016804.1	4106221	4108725	D	Protein is 190 aa longer than Rv3710, and 57 aalonger than Mb3737 due to differences in copy number of 19codon repeat at 3'-end; 2-isopropylmalate synthase	4106221..4108725	Mycobacterium bovis BCG str. Mexico	11812082
YP_005173223.1	CDS	dnaQ	NC_016804.1	4108791	4109780	R	Differs from Rv3711c by 3aa, D76G, A164V, L211V in BCG Pasteur, BCG Tokyo and BCG Mexico; DNA polymerase III subunit epsilon	complement(4108791..4109780)	Mycobacterium bovis BCG str. Mexico	11812083
YP_005173224.1	CDS	BCGMEX_3773	NC_016804.1	4109914	4111155	D	Differs from Rv3712 by 2aa, S200G, T351K in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative ligase	4109914..4111155	Mycobacterium bovis BCG str. Mexico	11812084
YP_005173225.1	CDS	cobQ2	NC_016804.1	4111160	4111855	D	putative cobyric acid synthase	4111160..4111855	Mycobacterium bovis BCG str. Mexico	11812085
YP_005173226.1	CDS	BCGMEX_3775c	NC_016804.1	4111864	4112754	R	hypothetical protein	complement(4111864..4112754)	Mycobacterium bovis BCG str. Mexico	11812086
YP_005173227.1	CDS	recR	NC_016804.1	4112822	4113433	R	Recombination protein	complement(4112822..4113433)	Mycobacterium bovis BCG str. Mexico	11812087
YP_005173228.1	CDS	BCGMEX_3777c	NC_016804.1	4113445	4113846	R	hypothetical protein	complement(4113445..4113846)	Mycobacterium bovis BCG str. Mexico	11812088
YP_005173229.1	CDS	BCGMEX_3778	NC_016804.1	4113981	4114706	D	hypothetical protein	4113981..4114706	Mycobacterium bovis BCG str. Mexico	11812089
YP_005173230.1	CDS	BCGMEX_3779c	NC_016804.1	4114748	4115191	R	hypothetical protein	complement(4114748..4115191)	Mycobacterium bovis BCG str. Mexico	11812090
YP_005173231.1	CDS	BCGMEX_3780	NC_016804.1	4115239	4116651	D	Differs from Rv3719 by 1aa, A12T in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	4115239..4116651	Mycobacterium bovis BCG str. Mexico	11812091
YP_005173232.1	CDS	BCGMEX_3781	NC_016804.1	4116669	4117931	D	cyclopropane-fatty-acyl-phospholipid synthase	4116669..4117931	Mycobacterium bovis BCG str. Mexico	11812092
YP_005173233.1	CDS	dnaZX	NC_016804.1	4117928	4119664	R	DNA polymerase III subunits gamma and tau	complement(4117928..4119664)	Mycobacterium bovis BCG str. Mexico	11812093
YP_005173234.1	CDS	BCGMEX_3783c	NC_016804.1	4119754	4121061	R	Differs from Rv3722c and Mb3749c by 1aa, Y314H in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(4119754..4121061)	Mycobacterium bovis BCG str. Mexico	11812094
YP_005173235.1	CDS	BCGMEX_3784	NC_016804.1	4121469	4122233	D	putative transmembrane protein	4121469..4122233	Mycobacterium bovis BCG str. Mexico	11812096
YP_005173236.1	CDS	cut5	NC_016804.1	4122400	4123101	D	In Mycobacterium tuberculosis, Rv3724A and Rv3724B exist as 2 genes with an overlap region between them. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico a single base deletion leads to a single product; putative cutinase	4122400..4123101	Mycobacterium bovis BCG str. Mexico	11812097
YP_005173237.1	CDS	BCGMEX_3786	NC_016804.1	4123146	4124147	D	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a single base insertion leads to a longer product with a different COOH part compared to its homolog in Mycobacterium tuberculosis (333 aa versus 309 aa); putative oxidoreductase	4123146..4124147	Mycobacterium bovis BCG str. Mexico	11812098
YP_005173238.1	CDS	BCGMEX_3787	NC_016804.1	4124354	4125547	D	Differs from Rv3726 by 1aa, S251R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative dehydrogenase	4124354..4125547	Mycobacterium bovis BCG str. Mexico	11812099
YP_005173239.1	CDS	BCGMEX_3788	NC_016804.1	4125888	4127696	D	Differs from Rv3727 by 1aa, M86V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative oxidoreductase	4125888..4127696	Mycobacterium bovis BCG str. Mexico	11812100
YP_005173240.1	CDS	BCGMEX_3789	NC_016804.1	4127806	4131003	D	Differs from Rv3728 by 1aa, R464G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative two-domain membrane protein	4127806..4131003	Mycobacterium bovis BCG str. Mexico	11812101
YP_005173241.1	CDS	BCGMEX_3790	NC_016804.1	4131218	4133548	D	Differs from Rv3729 by 2aa, I170V, S269P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transferase	4131218..4133548	Mycobacterium bovis BCG str. Mexico	11812102
YP_005173242.1	CDS	BCGMEX_3791c	NC_016804.1	4133613	4134653	R	hypothetical protein	complement(4133613..4134653)	Mycobacterium bovis BCG str. Mexico	11812103
YP_005173243.1	CDS	ligC	NC_016804.1	4134691	4135767	D	Differs from Rv3731 by 1aa, H313R in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; ATP-dependent DNA ligase	4134691..4135767	Mycobacterium bovis BCG str. Mexico	11812105
YP_005173244.1	CDS	BCGMEX_3793	NC_016804.1	4135867	4136925	D	hypothetical protein	4135867..4136925	Mycobacterium bovis BCG str. Mexico	11812106
YP_005173245.1	CDS	BCGMEX_3794c	NC_016804.1	4136945	4137445	R	hypothetical protein	complement(4136945..4137445)	Mycobacterium bovis BCG str. Mexico	11812107
YP_005173246.1	CDS	BCGMEX_3795c	NC_016804.1	4137459	4138823	R	putative diacylglycerol O-acyltransferase	complement(4137459..4138823)	Mycobacterium bovis BCG str. Mexico	11812108
YP_005173247.1	CDS	BCGMEX_3796	NC_016804.1	4139022	4139510	D	hypothetical protein	4139022..4139510	Mycobacterium bovis BCG str. Mexico	11812109
YP_005173248.1	CDS	BCGMEX_3797	NC_016804.1	4139567	4140628	D	Differs from Rv3736 and Mb3763 by 1aa, K76E in BCG Pasteur, BCG Tokyo and BCG Mexico; transcriptional regulatory protein, probably araC/xylS-family	4139567..4140628	Mycobacterium bovis BCG str. Mexico	11812110
YP_005173249.1	CDS	BCGMEX_3798	NC_016804.1	4140632	4142221	D	Differs from Rv3737 by 1aa, G40D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	4140632..4142221	Mycobacterium bovis BCG str. Mexico	11812111
YP_005173250.1	CDS	BCGMEX_3800c	NC_016804.1	4142600	4143946	R	Differs from Rv3740c by 1aa, C422R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative diacylglycerol O-acyltransferase	complement(4142600..4143946)	Mycobacterium bovis BCG str. Mexico	11812113
YP_005173251.1	CDS	BCGMEX_3801c	NC_016804.1	4143946	4144620	R	putative oxidoreductase	complement(4143946..4144620)	Mycobacterium bovis BCG str. Mexico	11812114
YP_005173252.1	CDS	BCGMEX_3802c	NC_016804.1	4144617	4145012	R	putative oxidoreductase	complement(4144617..4145012)	Mycobacterium bovis BCG str. Mexico	11812115
YP_005173253.1	CDS	ctpJ	NC_016804.1	4145158	4147140	R	putative cation transporter P-type ATPase	complement(4145158..4147140)	Mycobacterium bovis BCG str. Mexico	11812116
YP_005173254.1	CDS	BCGMEX_3804	NC_016804.1	4147207	4147569	D	transcriptional regulatory protein, probably ArsR-family	4147207..4147569	Mycobacterium bovis BCG str. Mexico	11812117
YP_005173255.1	CDS	BCGMEX_3805c	NC_016804.1	4147653	4147865	R	hypothetical protein	complement(4147653..4147865)	Mycobacterium bovis BCG str. Mexico	11812118
YP_005173256.1	CDS	PE34	NC_016804.1	4147938	4148273	R	putative PE family protein	complement(4147938..4148273)	Mycobacterium bovis BCG str. Mexico	11812119
YP_005173257.1	CDS	BCGMEX_3807	NC_016804.1	4148491	4148874	D	hypothetical protein	4148491..4148874	Mycobacterium bovis BCG str. Mexico	11812120
YP_005173258.1	CDS	BCGMEX_3808	NC_016804.1	4149004	4149363	D	Differs from Rv3748 by 1aa, D107G in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	4149004..4149363	Mycobacterium bovis BCG str. Mexico	11812121
YP_005173259.1	CDS	BCGMEX_3809c	NC_016804.1	4149396	4149905	R	hypothetical protein	complement(4149396..4149905)	Mycobacterium bovis BCG str. Mexico	11812122
YP_005173260.1	CDS	BCGMEX_3810c	NC_016804.1	4149973	4150365	R	putative excisionase	complement(4149973..4150365)	Mycobacterium bovis BCG str. Mexico	11812123
YP_005173261.1	CDS	BCGMEX_3811	NC_016804.1	4150641	4150856	D	putative integrase	4150641..4150856	Mycobacterium bovis BCG str. Mexico	11812124
YP_005173262.1	CDS	BCGMEX_3812c	NC_016804.1	4151014	4151472	R	putative cytidine/deoxycytidylate deaminase	complement(4151014..4151472)	Mycobacterium bovis BCG str. Mexico	11812126
YP_005173263.1	CDS	BCGMEX_3813c	NC_016804.1	4151488	4152009	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and Mycobacterium bovis, a single base transition leads to a longer product with a different 5' start compared to its homolog in Mycobacterium tuberculosis strain H37Rv(173 aa versus 166 aa); hypothetical protein	complement(4151488..4152009)	Mycobacterium bovis BCG str. Mexico	11812127
YP_005173264.1	CDS	tyrA	NC_016804.1	4152188	4153093	D	prephenate dehydrogenase	4152188..4153093	Mycobacterium bovis BCG str. Mexico	11812128
YP_005173265.1	CDS	BCGMEX_3815c	NC_016804.1	4153056	4153655	R	hypothetical protein	complement(4153056..4153655)	Mycobacterium bovis BCG str. Mexico	11812129
YP_005173266.1	CDS	proZ	NC_016804.1	4153661	4154380	R	putative osmoprotectant (Glycine betaine/carnitine/choline/L-proline) transport integral membrane protein ABC transporter	complement(4153661..4154380)	Mycobacterium bovis BCG str. Mexico	11812130
YP_005173267.1	CDS	proW	NC_016804.1	4154377	4155066	R	putative osmoprotectant (glycine betaine/carnitine/choline/L-proline) transport integral membrane protein ABC transporter	complement(4154377..4155066)	Mycobacterium bovis BCG str. Mexico	11812131
YP_005173268.1	CDS	proV	NC_016804.1	4155054	4156184	R	putative osmoprotectant (glycine betaine/carnitine/choline/L-proline) transport ATP-binding protein ABC transporter	complement(4155054..4156184)	Mycobacterium bovis BCG str. Mexico	11812132
YP_005173269.1	CDS	proX	NC_016804.1	4156193	4157140	R	Differs from Rv3759c by 2aa, P85L, V176A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative osmoprotectant (glycine betaine/carnitine/choline/L-proline) binding lipoprotein	complement(4156193..4157140)	Mycobacterium bovis BCG str. Mexico	11812133
YP_005173270.1	CDS	BCGMEX_3820	NC_016804.1	4157305	4157607	D	hypothetical protein	4157305..4157607	Mycobacterium bovis BCG str. Mexico	11812135
YP_005173271.1	CDS	fadE36	NC_016804.1	4157629	4158684	R	putative acyl-CoA dehydrogenase	complement(4157629..4158684)	Mycobacterium bovis BCG str. Mexico	11812136
YP_005173272.1	CDS	BCGMEX_3822c	NC_016804.1	4158763	4160643	R	Differs from Rv3762c by 1aa, H345Y and from Mb3788c by 1aa, V161G in BCG Pasteur, BCG Tokyo and BCG Mexico; putative hydrolase	complement(4158763..4160643)	Mycobacterium bovis BCG str. Mexico	11812137
YP_005173273.1	CDS	lpqH	NC_016804.1	4160814	4161293	D	19 kDa lipoprotein antigen	4160814..4161293	Mycobacterium bovis BCG str. Mexico	11812138
YP_005173274.1	CDS	BCGMEX_3824c	NC_016804.1	4161349	4162776	R	Differs from Rv3764c by 2aa, R45H, R246C in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Sensor protein	complement(4161349..4162776)	Mycobacterium bovis BCG str. Mexico	11812139
YP_005173275.1	CDS	BCGMEX_3825c	NC_016804.1	4162847	4163551	R	DNA-binding response regulator	complement(4162847..4163551)	Mycobacterium bovis BCG str. Mexico	11812140
YP_005173276.1	CDS	BCGMEX_3826	NC_016804.1	4164060	4164749	D	hypothetical protein	4164060..4164749	Mycobacterium bovis BCG str. Mexico	11812141
YP_005173277.1	CDS	BCGMEX_3827c	NC_016804.1	4164763	4165707	R	putative S-adenosyl-L-methionine-dependent methyltransferase	complement(4164763..4165707)	Mycobacterium bovis BCG str. Mexico	11812142
YP_005173278.1	CDS	BCGMEX_3828	NC_016804.1	4165837	4166196	D	hypothetical protein	4165837..4166196	Mycobacterium bovis BCG str. Mexico	11812143
YP_005173279.1	CDS	BCGMEX_3829	NC_016804.1	4166382	4166654	D	hypothetical protein	4166382..4166654	Mycobacterium bovis BCG str. Mexico	11812144
YP_005173280.1	CDS	BCGMEX_3830c	NC_016804.1	4166967	4167542	R	Differs from Rv3770c by 1aa, A98P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative leucine rich protein	complement(4166967..4167542)	Mycobacterium bovis BCG str. Mexico	11812145
YP_005173281.1	CDS	BCGMEX_3831c	NC_016804.1	4167648	4167830	R	putative remnant of a transposase	complement(4167648..4167830)	Mycobacterium bovis BCG str. Mexico	11812146
YP_005173282.1	CDS	BCGMEX_3832c	NC_016804.1	4167845	4168036	R	putative remnant of a transposase	complement(4167845..4168036)	Mycobacterium bovis BCG str. Mexico	11812147
YP_005173283.1	CDS	BCGMEX_3833c	NC_016804.1	4168171	4168497	R	hypothetical protein	complement(4168171..4168497)	Mycobacterium bovis BCG str. Mexico	11812148
YP_005173284.1	CDS	pat	NC_016804.1	4168901	4169962	D	Differs from Rv3772 by 1aa, A142T in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; putative phenylalanine aminotransferase	4168901..4169962	Mycobacterium bovis BCG str. Mexico	11812151
YP_005173285.1	CDS	BCGMEX_3835c	NC_016804.1	4170008	4170352	R	In Mycobacterium tuberculosis Rv3773c exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a single base insertion splits Rv3773c in two parts; hypothetical protein	complement(4170008..4170352)	Mycobacterium bovis BCG str. Mexico	11812152
YP_005173286.1	CDS	BCGMEX_3836c	NC_016804.1	4170357	4170593	R	In Mycobacterium tuberculosis strain H37Rv, Rv3773c exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a single base insertion splits Rv3773c into 2 parts; hypothetical protein	complement(4170357..4170593)	Mycobacterium bovis BCG str. Mexico	11812153
YP_005173287.1	CDS	echA21	NC_016804.1	4170617	4171441	D	Enoyl-CoA hydratase/isomerase family protein	4170617..4171441	Mycobacterium bovis BCG str. Mexico	11812154
YP_005173288.1	CDS	lipE	NC_016804.1	4171453	4172700	D	putative lipase	4171453..4172700	Mycobacterium bovis BCG str. Mexico	11812155
YP_005173289.1	CDS	BCGMEX_3839	NC_016804.1	4172857	4174416	D	Differs from Rv3776 by 1aa, V329M in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	4172857..4174416	Mycobacterium bovis BCG str. Mexico	11812156
YP_005173290.1	CDS	BCGMEX_3840	NC_016804.1	4174462	4175448	D	Differs from Rv3777 by 1aa, A160V in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative oxidoreductase	4174462..4175448	Mycobacterium bovis BCG str. Mexico	11812159
YP_005173291.1	CDS	BCGMEX_3841c	NC_016804.1	4175467	4176663	R	putative aminotransferase	complement(4175467..4176663)	Mycobacterium bovis BCG str. Mexico	11812161
YP_005173292.1	CDS	BCGMEX_3842	NC_016804.1	4176753	4178753	D	putative transmembrane protein alanine and leucine rich	4176753..4178753	Mycobacterium bovis BCG str. Mexico	11812162
YP_005173293.1	CDS	BCGMEX_3843	NC_016804.1	4178757	4179293	D	hypothetical protein	4178757..4179293	Mycobacterium bovis BCG str. Mexico	11812163
YP_005173294.1	CDS	rbfE	NC_016804.1	4179297	4180118	D	putative O-antigen/lipopolysaccharide transport ATP-binding protein ABC transporter	4179297..4180118	Mycobacterium bovis BCG str. Mexico	11812164
YP_005173295.1	CDS	BCGMEX_3845	NC_016804.1	4180115	4181029	D	putative glycosyl transferase	4180115..4181029	Mycobacterium bovis BCG str. Mexico	11812165
YP_005173296.1	CDS	rfbD	NC_016804.1	4181026	4181868	D	O-antigen/lipopolysaccharide transport integral membrane protein ABC transporter	4181026..4181868	Mycobacterium bovis BCG str. Mexico	11812166
YP_005173297.1	CDS	rfbB	NC_016804.1	4182024	4183004	D	dTDP-glucose 4,6-dehydratase	4182024..4183004	Mycobacterium bovis BCG str. Mexico	11812167
YP_005173298.1	CDS	BCGMEX_3848	NC_016804.1	4183088	4184161	D	hypothetical protein	4183088..4184161	Mycobacterium bovis BCG str. Mexico	11812168
YP_005173299.1	CDS	BCGMEX_3849c	NC_016804.1	4184142	4185365	R	hypothetical protein	complement(4184142..4185365)	Mycobacterium bovis BCG str. Mexico	11812169
YP_005173300.1	CDS	BCGMEX_3850c	NC_016804.1	4185378	4186304	R	putative S-adenosyl-L-methionine-dependent methyltransferase	complement(4185378..4186304)	Mycobacterium bovis BCG str. Mexico	11812170
YP_005173301.1	CDS	BCGMEX_3851	NC_016804.1	4186548	4187033	D	hypothetical protein	4186548..4187033	Mycobacterium bovis BCG str. Mexico	11812171
YP_005173302.1	CDS	BCGMEX_3852	NC_016804.1	4187142	4187507	D	hypothetical protein	4187142..4187507	Mycobacterium bovis BCG str. Mexico	11812172
YP_005173303.1	CDS	BCGMEX_3853	NC_016804.1	4187547	4188932	D	putative oxidoreductase	4187547..4188932	Mycobacterium bovis BCG str. Mexico	11812173
YP_005173304.1	CDS	BCGMEX_3854	NC_016804.1	4188933	4189697	D	putative short-chain dehydrogenase	4188933..4189697	Mycobacterium bovis BCG str. Mexico	11812174
YP_005173305.1	CDS	BCGMEX_3855	NC_016804.1	4189700	4191631	D	putative transmembrane protein	4189700..4191631	Mycobacterium bovis BCG str. Mexico	11812175
YP_005173306.1	CDS	embC	NC_016804.1	4191631	4194915	D	Differs from Rv3793 by 1aa, I270T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; integral membrane indolylacetylinositol arabinosyltransferase	4191631..4194915	Mycobacterium bovis BCG str. Mexico	11812176
YP_005173307.1	CDS	embA	NC_016804.1	4195001	4198285	D	putative arabinosyltransferase A	4195001..4198285	Mycobacterium bovis BCG str. Mexico	11812177
YP_005173308.1	CDS	embB	NC_016804.1	4198282	4201578	D	Differs from Rv3795 by 2aa, S13N, A378E in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative arabinosyltransferase B	4198282..4201578	Mycobacterium bovis BCG str. Mexico	11812178
YP_005173309.1	CDS	BCGMEX_3859	NC_016804.1	4201646	4202773	D	Differs from Rv3796 by 1aa, I320T in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	4201646..4202773	Mycobacterium bovis BCG str. Mexico	11812179
YP_005173310.1	CDS	fadE35	NC_016804.1	4202853	4204634	D	putative acyl-CoA dehydrogenase	4202853..4204634	Mycobacterium bovis BCG str. Mexico	11812180
YP_005173311.1	CDS	BCGMEX_3861	NC_016804.1	4204761	4206095	D	In Mycobacterium tuberculosis strain H37Rv (Rv3798), Mycobacterium bovis BCG Pasteur (BCG_3860), BCG Tokyo and BCG Mexico, exist as a single gene. In Mycobacterium bovis, a frameshift due to a 11 bp deletion splits Rv3798 into 2 parts, Mb3827 and Mb3828. In Mycobacterium bovis, a frameshift due to a 11 bp deletion splits Rv3798 into 2 parts, Mb3827 and Mb3828; Transposase for insertion sequence element IS1557	4204761..4206095	Mycobacterium bovis BCG str. Mexico	11812181
YP_005173312.1	CDS	accD4	NC_016804.1	4206148	4207716	R	propionyl-CoA carboxylase beta chain	complement(4206148..4207716)	Mycobacterium bovis BCG str. Mexico	11812182
YP_005173313.1	CDS	pks13	NC_016804.1	4207713	4212914	R	Differs from Rv3800c by 2aa, G523A, N650S and from Mb3829c by 1aa, N650S in BCG Pasteur, BCG Tokyo and BCG Mexico; polyketide synthase	complement(4207713..4212914)	Mycobacterium bovis BCG str. Mexico	11812183
YP_005173314.1	CDS	fadD32	NC_016804.1	4212921	4214834	R	Differs from Rv3801c by 1aa, V523A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Fatty-acid-CoA ligase	complement(4212921..4214834)	Mycobacterium bovis BCG str. Mexico	11812184
YP_005173315.1	CDS	BCGMEX_3865c	NC_016804.1	4215123	4216133	R	hypothetical protein	complement(4215123..4216133)	Mycobacterium bovis BCG str. Mexico	11812185
YP_005173316.1	CDS	mpt51	NC_016804.1	4216331	4217230	R	MPT51/MPB51 antigen	complement(4216331..4217230)	Mycobacterium bovis BCG str. Mexico	11812186
YP_005173317.1	CDS	fbpA	NC_016804.1	4217410	4218426	R	antigen 85-A	complement(4217410..4218426)	Mycobacterium bovis BCG str. Mexico	11812187
YP_005173318.1	CDS	BCGMEX_3868c	NC_016804.1	4218721	4220604	R	Differs from Rv3805c by 1aa, V327I in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	complement(4218721..4220604)	Mycobacterium bovis BCG str. Mexico	11812188
YP_005173319.1	CDS	BCGMEX_3869c	NC_016804.1	4220693	4221601	R	Differs from Rv3806c by 2aa, I49V and D149E, and from Mb3836c by 1aa, I49V in BCG Pasteur, BCG Tokyo and BCG Mexico; putative integral membrane protein	complement(4220693..4221601)	Mycobacterium bovis BCG str. Mexico	11812189
YP_005173320.1	CDS	BCGMEX_3870c	NC_016804.1	4221608	4222105	R	putative transmembrane protein	complement(4221608..4222105)	Mycobacterium bovis BCG str. Mexico	11812190
YP_005173321.1	CDS	BCGMEX_3871c	NC_016804.1	4222134	4224047	R	Galactofuranosyl transferase	complement(4222134..4224047)	Mycobacterium bovis BCG str. Mexico	11812191
YP_005173322.1	CDS	glf	NC_016804.1	4224044	4225243	R	UDP-galactopyranose mutase	complement(4224044..4225243)	Mycobacterium bovis BCG str. Mexico	11812192
YP_005173323.1	CDS	pirG	NC_016804.1	4225507	4226361	D	Exported repetitive protein	4225507..4226361	Mycobacterium bovis BCG str. Mexico	11812193
YP_005173324.1	CDS	BCGMEX_3874	NC_016804.1	4226566	4228185	D	hypothetical protein	4226566..4228185	Mycobacterium bovis BCG str. Mexico	11812194
YP_005173325.1	CDS	PE_PGRS62	NC_016804.1	4228339	4229853	D	PE-PGRS family protein	4228339..4229853	Mycobacterium bovis BCG str. Mexico	11812195
YP_005173326.1	CDS	BCGMEX_3876c	NC_016804.1	4230162	4230983	R	Differs from Rv3813c by 1aa, T83M in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(4230162..4230983)	Mycobacterium bovis BCG str. Mexico	11812196
YP_005173327.1	CDS	BCGMEX_3877c	NC_016804.1	4230998	4231783	R	putative acyltransferase	complement(4230998..4231783)	Mycobacterium bovis BCG str. Mexico	11812197
YP_005173328.1	CDS	BCGMEX_3878c	NC_016804.1	4231801	4232556	R	putative acyltransferase	complement(4231801..4232556)	Mycobacterium bovis BCG str. Mexico	11812198
YP_005173329.1	CDS	BCGMEX_3879c	NC_016804.1	4232560	4233339	R	putative acyltransferase	complement(4232560..4233339)	Mycobacterium bovis BCG str. Mexico	11812199
YP_005173330.1	CDS	BCGMEX_3880	NC_016804.1	4233415	4234170	D	putative phosphotransferase	4233415..4234170	Mycobacterium bovis BCG str. Mexico	11812200
YP_005173331.1	CDS	BCGMEX_3881	NC_016804.1	4234217	4235767	D	hypothetical protein	4234217..4235767	Mycobacterium bovis BCG str. Mexico	11812201
YP_005173332.1	CDS	BCGMEX_3882	NC_016804.1	4235764	4236099	D	hypothetical protein	4235764..4236099	Mycobacterium bovis BCG str. Mexico	11812202
YP_005173333.1	CDS	papA2	NC_016804.1	4236187	4237593	R	Differs from Rv3820c by 1aa, I463T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; polyketide synthase associated protein	complement(4236187..4237593)	Mycobacterium bovis BCG str. Mexico	11812203
YP_005173334.1	CDS	BCGMEX_3884	NC_016804.1	4237741	4238454	D	Differs from Rv3821 by 2aa, N106D, T120A in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; putative integral membrane protein	4237741..4238454	Mycobacterium bovis BCG str. Mexico	11812204
YP_005173335.1	CDS	BCGMEX_3885	NC_016804.1	4238489	4238857	D	Corresponds to Rv3822/Mb3852 but is missing 1bp after codon 122. Differs from Rv3822 by 2aa, Y55C, T103N, in first part (and by 1aa, V92A, in the second part); hypothetical protein	4238489..4238857	Mycobacterium bovis BCG str. Mexico	11812205
YP_005173336.1	CDS	BCGMEX_3886	NC_016804.1	4238854	4239702	D	Corresponds to 3'-part of Rv3822/Mb3852 due to missing bp after codon 122. Differs from Rv3822 by 1aa, V92A (and by 2aa, Y55C, T105N, in first part); hypothetical protein	4238854..4239702	Mycobacterium bovis BCG str. Mexico	11812206
YP_005173337.1	CDS	mmpL8	NC_016804.1	4240027	4243296	R	Differs from Rv3823c by 2aa, R235G, A526V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; membrane transport protein	complement(4240027..4243296)	Mycobacterium bovis BCG str. Mexico	11812207
YP_005173338.1	CDS	papA1	NC_016804.1	4243406	4244941	R	polyketide synthase associated protein	complement(4243406..4244941)	Mycobacterium bovis BCG str. Mexico	11812208
YP_005173339.1	CDS	pks2	NC_016804.1	4244992	4251372	R	Differs from Rv3825c and Mb3855c by 1aa, G829V in BCG Pasteur, BCG Tokyo and BCG Mexico; polyketide synthase	complement(4244992..4251372)	Mycobacterium bovis BCG str. Mexico	11812209
YP_005173340.1	CDS	BCGMEX_3891c	NC_016804.1	4252676	4253902	R	Differs from Rv3827c by 1aa, A251T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transposase	complement(4252676..4253902)	Mycobacterium bovis BCG str. Mexico	11812211
YP_005173341.1	CDS	BCGMEX_3892c	NC_016804.1	4253899	4254510	R	putative resolvase	complement(4253899..4254510)	Mycobacterium bovis BCG str. Mexico	11812212
YP_005173342.1	CDS	BCGMEX_3893c	NC_016804.1	4254511	4256121	R	Differs from Rv3829c by 1aa, D55E in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative dehydrogenase	complement(4254511..4256121)	Mycobacterium bovis BCG str. Mexico	11812213
YP_005173343.1	CDS	BCGMEX_3894c	NC_016804.1	4256169	4256798	R	transcriptional regulatory protein, TetR family	complement(4256169..4256798)	Mycobacterium bovis BCG str. Mexico	11812214
YP_005173344.1	CDS	BCGMEX_3895	NC_016804.1	4256870	4257352	D	hypothetical protein	4256870..4257352	Mycobacterium bovis BCG str. Mexico	11812215
YP_005173345.1	CDS	BCGMEX_3896c	NC_016804.1	4257349	4257924	R	hypothetical protein	complement(4257349..4257924)	Mycobacterium bovis BCG str. Mexico	11812216
YP_005173346.1	CDS	BCGMEX_3897	NC_016804.1	4257980	4258771	D	Differs from Rv3833 by 1aa, I105V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; transcriptional regulatory protein, AraC family	4257980..4258771	Mycobacterium bovis BCG str. Mexico	11812217
YP_005173347.1	CDS	serS	NC_016804.1	4258768	4260027	R	seryl-tRNA synthetase	complement(4258768..4260027)	Mycobacterium bovis BCG str. Mexico	11812218
YP_005173348.1	CDS	BCGMEX_3899	NC_016804.1	4260160	4261518	D	Differs from Rv3835 and Mb3865 by 1 aa, Y79N in BCG Pasteur, BCG Tokyo and BCG Mexico, and frameshift due to extra C in C-string that changes C-terminus in BCG Pasteur and BCG Mexico; membrane protein	4260160..4261518	Mycobacterium bovis BCG str. Mexico	11812219
YP_005173349.1	CDS	BCGMEX_3900	NC_016804.1	4261515	4261865	D	In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a single base insertion introducing a premature stop codon, leads to a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (116 aa versus 137 aa); hypothetical protein	4261515..4261865	Mycobacterium bovis BCG str. Mexico	11812220
YP_005173350.1	CDS	BCGMEX_3901c	NC_016804.1	4262124	4262822	R	putative phosphoglycerate mutase	complement(4262124..4262822)	Mycobacterium bovis BCG str. Mexico	11812221
YP_005173351.1	CDS	pheA	NC_016804.1	4262819	4263784	R	prephenate dehydratase	complement(4262819..4263784)	Mycobacterium bovis BCG str. Mexico	11812222
YP_005173352.1	CDS	BCGMEX_3903	NC_016804.1	4263880	4264656	D	Differs from Rv3839 by 1aa, S122P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	4263880..4264656	Mycobacterium bovis BCG str. Mexico	11812223
YP_005173353.1	CDS	BCGMEX_3904	NC_016804.1	4264682	4265095	D	putative transcriptional regulatory protein	4264682..4265095	Mycobacterium bovis BCG str. Mexico	11812224
YP_005173354.1	CDS	bfrB	NC_016804.1	4265293	4265838	D	putative bacterioferritin	4265293..4265838	Mycobacterium bovis BCG str. Mexico	11812225
YP_005173355.1	CDS	glpQ1	NC_016804.1	4265853	4266677	R	glycerophosphoryl diester phosphodiesterase	complement(4265853..4266677)	Mycobacterium bovis BCG str. Mexico	11812226
YP_005173356.1	CDS	BCGMEX_3907c	NC_016804.1	4266683	4267711	R	Differs from Rv3843c by 2aa, R11G, H92R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	complement(4266683..4267711)	Mycobacterium bovis BCG str. Mexico	11812227
YP_005173357.1	CDS	BCGMEX_3908c	NC_016804.1	4268800	4269012	R	hypothetical protein	complement(4268800..4269012)	Mycobacterium bovis BCG str. Mexico	11812228
YP_005173358.1	CDS	BCGMEX_3909	NC_016804.1	4269889	4270380	D	putative transposase	4269889..4270380	Mycobacterium bovis BCG str. Mexico	11812229
YP_005173359.1	CDS	BCGMEX_3910	NC_016804.1	4270395	4270754	D	hypothetical protein	4270395..4270754	Mycobacterium bovis BCG str. Mexico	11812230
YP_005173360.1	CDS	sodA	NC_016804.1	4271818	4272441	D	Differs from Rv3846 by 1aa, T205I in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; Superoxide dismutase	4271818..4272441	Mycobacterium bovis BCG str. Mexico	11812231
YP_005173361.1	CDS	BCGMEX_3912	NC_016804.1	4272652	4273185	D	hypothetical protein	4272652..4273185	Mycobacterium bovis BCG str. Mexico	11812232
YP_005173362.1	CDS	BCGMEX_3913	NC_016804.1	4273440	4274348	D	Differs from Rv3848 by 1aa, I194V in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	4273440..4274348	Mycobacterium bovis BCG str. Mexico	11812233
YP_005173363.1	CDS	BCGMEX_3914	NC_016804.1	4274613	4275011	D	hypothetical protein	4274613..4275011	Mycobacterium bovis BCG str. Mexico	11812234
YP_005173364.1	CDS	BCGMEX_3915	NC_016804.1	4275129	4275785	D	hypothetical protein	4275129..4275785	Mycobacterium bovis BCG str. Mexico	11812235
YP_005173365.1	CDS	BCGMEX_3916	NC_016804.1	4275797	4276081	D	hypothetical protein	4275797..4276081	Mycobacterium bovis BCG str. Mexico	11812236
YP_005173366.1	CDS	hns	NC_016804.1	4276188	4276592	D	putative histone-like protein	4276188..4276592	Mycobacterium bovis BCG str. Mexico	11812237
YP_005173367.1	CDS	rraA	NC_016804.1	4276609	4277082	D	Regulator of ribonuclease activity A	4276609..4277082	Mycobacterium bovis BCG str. Mexico	11812238
YP_005173368.1	CDS	ethA	NC_016804.1	4277118	4278587	R	monooxygenase	complement(4277118..4278587)	Mycobacterium bovis BCG str. Mexico	11812239
YP_005173369.1	CDS	ethR	NC_016804.1	4278663	4279313	D	transcriptional regulatory repressor protein, TetR family	4278663..4279313	Mycobacterium bovis BCG str. Mexico	11812240
YP_005173370.1	CDS	BCGMEX_3921c	NC_016804.1	4279515	4280522	R	hypothetical protein	complement(4279515..4280522)	Mycobacterium bovis BCG str. Mexico	11812241
YP_005173371.1	CDS	BCGMEX_3922c	NC_016804.1	4280531	4280728	R	hypothetical protein	complement(4280531..4280728)	Mycobacterium bovis BCG str. Mexico	11812242
YP_005173372.1	CDS	gltD	NC_016804.1	4281153	4282619	R	Differs from Rv3858c by 3aa, N377T, A415D, H423R and from Mb3888c by 2aa N377T and A415D in BCG Pasteur, BCG Tokyo and BCG Mexico; glutamate synthase subunit beta	complement(4281153..4282619)	Mycobacterium bovis BCG str. Mexico	11812243
YP_005173373.1	CDS	gltB	NC_016804.1	4282612	4287195	R	Differs from Rv3859c by 1aa, E553Q in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; putative ferredoxin-dependent glutamate synthase [NADPH] large subunit	complement(4282612..4287195)	Mycobacterium bovis BCG str. Mexico	11812244
YP_005173374.1	CDS	BCGMEX_3925	NC_016804.1	4287600	4288292	D	In Mycobacterium bovis BCG Mexico a deletion leads to a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (230 aa versus 392 aa); hypothetical protein	4287600..4288292	Mycobacterium bovis BCG str. Mexico	11812245
YP_005173375.1	CDS	BCGMEX_3926	NC_016804.1	4288535	4289791	D	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and in Mycobacterium bovis, two in-frame insertion of 36 and 12bp, leads to a longer product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (418 aa versus 402 aa); hypothetical protein	4288535..4289791	Mycobacterium bovis BCG str. Mexico	11812246
YP_005173376.1	CDS	espF	NC_016804.1	4289879	4290190	D	ESX-1 secretion-associated protein EspF	4289879..4290190	Mycobacterium bovis BCG str. Mexico	11812247
YP_005173377.1	CDS	espG1	NC_016804.1	4290193	4291044	D	ESX-1 secretion-associated protein EspG1	4290193..4291044	Mycobacterium bovis BCG str. Mexico	11812248
YP_005173378.1	CDS	espH	NC_016804.1	4291083	4291634	D	ESX-1 secretion-associated protein EspH	4291083..4291634	Mycobacterium bovis BCG str. Mexico	11812249
YP_005173379.1	CDS	eccA1	NC_016804.1	4291627	4293348	D	Differs from Rv3868 by 1aa, V243A in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; ESX-1 secretion system protein EccA1	4291627..4293348	Mycobacterium bovis BCG str. Mexico	11812250
YP_005173380.1	CDS	eccB1	NC_016804.1	4293352	4294794	D	ESX-1 secretion system protein EccB1	4293352..4294794	Mycobacterium bovis BCG str. Mexico	11812251
YP_005173381.1	CDS	eccCa1	NC_016804.1	4294794	4297037	D	ESX-1 secretion system protein eccCa1	4294794..4297037	Mycobacterium bovis BCG str. Mexico	11812252
YP_005173382.1	CDS	BCGMEX_3933	NC_016804.1	4297140	4298612	D	Differs from Rv3871 and Mb3901 by deletion of 101 codons after codon 480 due to BCG-specific RD1 deletion; hypothetical protein	4297140..4298612	Mycobacterium bovis BCG str. Mexico	11812253
YP_005173383.1	CDS	BCGMEX_3934c	NC_016804.1	4299055	4299402	R	hypothetical protein	complement(4299055..4299402)	Mycobacterium bovis BCG str. Mexico	11812254
YP_005173384.1	CDS	BCGMEX_3935c	NC_016804.1	4299399	4300781	R	Differs from Rv3881c by 7 codon stretch due to 1bp deletion and 1 bp insertion in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(4299399..4300781)	Mycobacterium bovis BCG str. Mexico	11812255
YP_005173385.1	CDS	eccE1	NC_016804.1	4300888	4302276	R	ESX-1 secretion system protein EccE1	complement(4300888..4302276)	Mycobacterium bovis BCG str. Mexico	11812256
YP_005173386.1	CDS	BCGMEX_3937c	NC_016804.1	4302273	4303613	R	putative secreted protease	complement(4302273..4303613)	Mycobacterium bovis BCG str. Mexico	11812257
YP_005173387.1	CDS	BCGMEX_3938c	NC_016804.1	4303835	4305694	R	Differs from Rv3884c by 1aa, G215E in Mycobacterium tuberculosis CDC1551, Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; Stage V sporulation protein K	complement(4303835..4305694)	Mycobacterium bovis BCG str. Mexico	11812258
YP_005173388.1	CDS	BCGMEX_3939c	NC_016804.1	4305764	4307377	R	Differs from Rv3885c by 1aa, P133L in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; membrane protein	complement(4305764..4307377)	Mycobacterium bovis BCG str. Mexico	11812259
YP_005173389.1	CDS	BCGMEX_3940c	NC_016804.1	4307374	4309026	R	putative secreted alanine and proline rich protease	complement(4307374..4309026)	Mycobacterium bovis BCG str. Mexico	11812260
YP_005173390.1	CDS	eccD2	NC_016804.1	4309011	4310540	R	SX-2 secretion system protein eccD2	complement(4309011..4310540)	Mycobacterium bovis BCG str. Mexico	11812261
YP_005173391.1	CDS	BCGMEX_3942c	NC_016804.1	4310537	4311199	R	Has no counterpart in Mycobacterium bovis owing to deletion of 2405bp; hypothetical protein	complement(4310537..4311199)	Mycobacterium bovis BCG str. Mexico	11812262
YP_005173392.1	CDS	BCGMEX_3943c	NC_016804.1	4311196	4311561	R	Has no counterpart in Mycobacterium bovis owing to deletion of 2405bp; hypothetical protein	complement(4311196..4311561)	Mycobacterium bovis BCG str. Mexico	11812263
YP_005173393.1	CDS	BCGMEX_3944c	NC_016804.1	4311655	4312485	R	In Mycobacterium bovis, a deletion of 2406 bases leads to the loss of the NH2 part of Rv3887c, the entire Rv3888c and the COOH part of Rv3889c compared to Mycobacterium tuberculosis strain H37Rv,Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(4311655..4312485)	Mycobacterium bovis BCG str. Mexico	11812264
YP_005173394.1	CDS	esxC	NC_016804.1	4312493	4312867	R	In Mycobacterium bovis BCG Pasteur, BCG Tokyo, BCG Mexico and in Mycobacterium bovis, a frameshift due to a single base deletion leads to a longer product with a different COOH part compared to its homolog in Mycobacterium tuberculosis strain H37Rv (124 aa versus 95 aa); putative EsaT-6 like protein 11	complement(4312493..4312867)	Mycobacterium bovis BCG str. Mexico	11812265
YP_005173395.1	CDS	esxD	NC_016804.1	4312903	4313226	R	Differs from Rv3891c by 1aa, A49T in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(4312903..4313226)	Mycobacterium bovis BCG str. Mexico	11812266
YP_005173396.1	CDS	PPE69	NC_016804.1	4313337	4314536	R	Differs from Rv3892c by 2aa, K19T, I206M and from Mb3921c by 1aa I206M in BCG Pasteur, BCG Tokyo and BCG Mexico; PPE family protein	complement(4313337..4314536)	Mycobacterium bovis BCG str. Mexico	11812267
YP_005173397.1	CDS	PE36	NC_016804.1	4314615	4314848	R	PE family protein	complement(4314615..4314848)	Mycobacterium bovis BCG str. Mexico	11812268
YP_005173398.1	CDS	BCGMEX_3949c	NC_016804.1	4315115	4316800	R	In Mycobacterium tuberculosis, Rv3894c exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a single base insertion, splits Rv3894c into 2 parts; membrane protein	complement(4315115..4316800)	Mycobacterium bovis BCG str. Mexico	11812269
YP_005173399.1	CDS	BCGMEX_3950c	NC_016804.1	4316805	4319306	R	In Mycobacterium tuberculosis, Rv3894c exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a single base insertion, splits Rv3894c into 2 parts. Differs from first part of Rv3984c by 1aa, P258R in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(4316805..4319306)	Mycobacterium bovis BCG str. Mexico	11812270
YP_005173400.1	CDS	eccB2	NC_016804.1	4319307	4320794	R	Differs from Rv3895c by 1aa, G356D in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; ESX-2 secretion system protein eccB2	complement(4319307..4320794)	Mycobacterium bovis BCG str. Mexico	11812271
YP_005173401.1	CDS	BCGMEX_3952c	NC_016804.1	4320838	4321704	R	Differs from Rv3896c by 3aa, G83D, V186I, K193Q, and by frameshift due to 1bp deletion leading to shorter product (288 aa versus 302 aa) in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(4320838..4321704)	Mycobacterium bovis BCG str. Mexico	11812272
YP_005173402.1	CDS	BCGMEX_3953c	NC_016804.1	4321854	4322843	R	In Mycobacterium tuberculosis, Rv3898c and Rv3897c exist as 2 genes. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a single base transition leads to a single product; hypothetical protein	complement(4321854..4322843)	Mycobacterium bovis BCG str. Mexico	11812273
YP_005173403.1	CDS	BCGMEX_3954c	NC_016804.1	4323005	4323886	R	In Mycobacterium tuberculosis, Rv3899c exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur , BCG Tokyo and BCG Mexico, a frameshift due to a single base deletion splits Rv3899c into 2 parts, Mb3928c and Mb3929c with the former being the more likely product; hypothetical protein	complement(4323005..4323886)	Mycobacterium bovis BCG str. Mexico	11812274
YP_005173404.1	CDS	BCGMEX_3956c	NC_016804.1	4324230	4325165	R	Differs from Rv3900c by 1aa, A18P in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(4324230..4325165)	Mycobacterium bovis BCG str. Mexico	11812276
YP_005173405.1	CDS	BCGMEX_3957c	NC_016804.1	4325274	4325669	R	Differs from Rv3901c by 1aa, W21L, and frameshift due to 2bp deletion at 3'-end, and from Mb3931c by frameshift only in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	complement(4325274..4325669)	Mycobacterium bovis BCG str. Mexico	11812277
YP_005173406.1	CDS	BCGMEX_3958c	NC_016804.1	4326220	4326750	R	hypothetical protein	complement(4326220..4326750)	Mycobacterium bovis BCG str. Mexico	11812278
YP_005173407.1	CDS	BCGMEX_3959c	NC_016804.1	4326747	4329287	R	hypothetical protein	complement(4326747..4329287)	Mycobacterium bovis BCG str. Mexico	11812279
YP_005173408.1	CDS	esxE	NC_016804.1	4329292	4329564	R	Differs from Rv3904c by 1aa, V82M in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative ESAT-6-like protein 12	complement(4329292..4329564)	Mycobacterium bovis BCG str. Mexico	11812280
YP_005173409.1	CDS	esxF	NC_016804.1	4329713	4329886	R	In Mycobacterium bovis, and Mycobacteium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a single base transition introducing a premature stop codon, leads to a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (57 aa versus 103 aa); putative ESAT-6 like protein 13	complement(4329713..4329886)	Mycobacterium bovis BCG str. Mexico	11812281
YP_005173410.1	CDS	BCGMEX_3962c	NC_016804.1	4329952	4330461	R	hypothetical protein	complement(4329952..4330461)	Mycobacterium bovis BCG str. Mexico	11812282
YP_005173411.1	CDS	pcnA	NC_016804.1	4330486	4331928	R	poly(A) polymerase	complement(4330486..4331928)	Mycobacterium bovis BCG str. Mexico	11812283
YP_005173412.1	CDS	muT4	NC_016804.1	4332304	4333050	D	putative mutator mutT4 protein	4332304..4333050	Mycobacterium bovis BCG str. Mexico	11812284
YP_005173413.1	CDS	BCGMEX_3965	NC_016804.1	4333047	4335455	D	Differs from Rv3909 by 3aa, R7G, S399N, V538A and from Mb3939 by 1aa G25A in BCG Pasteur, BCG Tokyo and BCG Mexico; hypothetical protein	4333047..4335455	Mycobacterium bovis BCG str. Mexico	11812285
YP_005173414.1	CDS	BCGMEX_3966	NC_016804.1	4335452	4339006	D	Differs from Rv3910 by 1aa, A480V in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; putative transmembrane protein	4335452..4339006	Mycobacterium bovis BCG str. Mexico	11812286
YP_005173415.1	CDS	sigMa	NC_016804.1	4339041	4339631	D	In Mycobacterium tuberculosis, sigM exists as a single gene. In Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico, a frameshift due to a 2bp to 1bp substitution splits sigM into 2 parts, sigMa and sigMb. Differs from Mb3941 by 1aa A160S in BCG Pasteur, BCG Tokyo and BCG Mexico; RNA polymerase sigma factor	4339041..4339631	Mycobacterium bovis BCG str. Mexico	11812287
YP_005173416.1	CDS	BCGMEX_3969	NC_016804.1	4339724	4340488	D	hypothetical protein	4339724..4340488	Mycobacterium bovis BCG str. Mexico	11812289
YP_005173417.1	CDS	trxB2	NC_016804.1	4340582	4341589	D	Differs from Rv3913 by 1aa, G57D in Mycobacterium bovis, BCG Pasteur, BCG Tokyo and BCG Mexico; Thioredoxin reductase	4340582..4341589	Mycobacterium bovis BCG str. Mexico	11812290
YP_005173418.1	CDS	trxC	NC_016804.1	4341586	4341936	D	Thioredoxin	4341586..4341936	Mycobacterium bovis BCG str. Mexico	11812291
YP_005173419.1	CDS	BCGMEX_3972	NC_016804.1	4342046	4343266	D	putative N-acetylmuramoyl-L-alanine amidase	4342046..4343266	Mycobacterium bovis BCG str. Mexico	11812292
YP_005173420.1	CDS	BCGMEX_3973c	NC_016804.1	4343287	4344021	R	hypothetical protein	complement(4343287..4344021)	Mycobacterium bovis BCG str. Mexico	11812293
YP_005173421.1	CDS	parB	NC_016804.1	4344311	4345345	R	putative chromosome partitioning protein	complement(4344311..4345345)	Mycobacterium bovis BCG str. Mexico	11812294
YP_005173422.1	CDS	parA	NC_016804.1	4345342	4346385	R	putative chromosome partitioning protein	complement(4345342..4346385)	Mycobacterium bovis BCG str. Mexico	11812295
YP_005173423.1	CDS	rsmG2	NC_016804.1	4346382	4347056	R	Differs from Rv3919c by 1aa, F100S in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; ribosomal RNA small subunit methyltransferase G	complement(4346382..4347056)	Mycobacterium bovis BCG str. Mexico	11812296
YP_005173424.1	CDS	BCGMEX_3977c	NC_016804.1	4347188	4347751	R	Differs from Rv3920c by 1aa, W110R in Mycobacterium bovis, Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; putative jag protein	complement(4347188..4347751)	Mycobacterium bovis BCG str. Mexico	11812297
YP_005173425.1	CDS	oxaA	NC_016804.1	4347823	4348923	R	Differs from Rv3921c and Mb3952c by 1aa, V184A in Mycobacterium bovis BCG Pasteur, BCG Tokyo and BCG Mexico; membrane protein OxaA	complement(4347823..4348923)	Mycobacterium bovis BCG str. Mexico	11812298
YP_005173426.1	CDS	BCGMEX_3979c	NC_016804.1	4348907	4349269	R	hypothetical protein	complement(4348907..4349269)	Mycobacterium bovis BCG str. Mexico	11812299
YP_005173427.1	CDS	rnpA	NC_016804.1	4349266	4349643	R	ribonuclease P protein component	complement(4349266..4349643)	Mycobacterium bovis BCG str. Mexico	11812300
YP_005173428.1	CDS	rpmH	NC_016804.1	4349640	4349783	R	50S ribosomal protein L34	complement(4349640..4349783)	Mycobacterium bovis BCG str. Mexico	11812301
BCGMEX_t0001	tRNA	ileT	NC_016804.1	10887	10960	D	tRNA-Ile	10887..10960	Mycobacterium bovis BCG str. Mexico	11812158
BCGMEX_t0002	tRNA	alaT	NC_016804.1	11112	11184	D	tRNA-Ala	11112..11184	Mycobacterium bovis BCG str. Mexico	11812160
BCGMEX_t0003	tRNA	leuT	NC_016804.1	25625	25707	D	tRNA-Leu	25625..25707	Mycobacterium bovis BCG str. Mexico	11808284
BCGMEX_t0004	tRNA	glyU	NC_016804.1	387465	387535	R	tRNA-Gly	complement(387465..387535)	Mycobacterium bovis BCG str. Mexico	11808592
BCGMEX_t0005	tRNA	tyrT	NC_016804.1	659334	659414	D	tRNA-Tyr	659334..659414	Mycobacterium bovis BCG str. Mexico	11808848
BCGMEX_t0006	tRNA	thrT	NC_016804.1	732704	732776	D	tRNA-Thr	732704..732776	Mycobacterium bovis BCG str. Mexico	11808920
BCGMEX_t0007	tRNA	metT	NC_016804.1	732813	732886	D	tRNA-Met	732813..732886	Mycobacterium bovis BCG str. Mexico	11808921
BCGMEX_t0008	tRNA	trpT	NC_016804.1	734734	734806	D	tRNA-Trp	734734..734806	Mycobacterium bovis BCG str. Mexico	11808926
BCGMEX_t0009	tRNA	thrV	NC_016804.1	852704	852775	R	tRNA-Thr	complement(852704..852775)	Mycobacterium bovis BCG str. Mexico	11809048
BCGMEX_t0010	tRNA	lysT	NC_016804.1	924503	924575	R	tRNA-Lys	complement(924503..924575)	Mycobacterium bovis BCG str. Mexico	11809126
BCGMEX_t0011	tRNA	gluT	NC_016804.1	924699	924772	D	tRNA-Glu	924699..924772	Mycobacterium bovis BCG str. Mexico	11809127
BCGMEX_t0012	tRNA	aspT	NC_016804.1	924810	924883	D	tRNA-Asp	924810..924883	Mycobacterium bovis BCG str. Mexico	11809128
BCGMEX_t0013	tRNA	pheU	NC_016804.1	924913	924986	D	tRNA-Phe	924913..924986	Mycobacterium bovis BCG str. Mexico	11809129
BCGMEX_t0014	tRNA	argT	NC_016804.1	1026075	1026147	R	tRNA-Arg	complement(1026075..1026147)	Mycobacterium bovis BCG str. Mexico	11809217
BCGMEX_t0015	tRNA	alaV	NC_016804.1	1114279	1114351	D	tRNA-Ala	1114279..1114351	Mycobacterium bovis BCG str. Mexico	11809299
BCGMEX_t0016	tRNA	glnT	NC_016804.1	1138840	1138911	R	tRNA-Gln	complement(1138840..1138911)	Mycobacterium bovis BCG str. Mexico	11809324
BCGMEX_t0017	tRNA	leuX	NC_016804.1	1178161	1178234	D	tRNA-Leu	1178161..1178234	Mycobacterium bovis BCG str. Mexico	11809363
BCGMEX_t0018	tRNA	argV	NC_016804.1	1442999	1443071	R	tRNA-Arg	complement(1442999..1443071)	Mycobacterium bovis BCG str. Mexico	11809602
BCGMEX_t0019	tRNA	leuW	NC_016804.1	1509521	1509604	D	tRNA-Leu	1509521..1509604	Mycobacterium bovis BCG str. Mexico	11809664
BCGMEX_t0020	tRNA	leuV	NC_016804.1	1803541	1803614	R	tRNA-Leu	complement(1803541..1803614)	Mycobacterium bovis BCG str. Mexico	11809919
BCGMEX_t0021	tRNA	proT	NC_016804.1	1922108	1922181	D	tRNA-Pro	1922108..1922181	Mycobacterium bovis BCG str. Mexico	11810015
BCGMEX_t0022	tRNA	leuU	NC_016804.1	2361362	2361447	D	tRNA-Leu	2361362..2361447	Mycobacterium bovis BCG str. Mexico	11810430
BCGMEX_t0023	tRNA	valV	NC_016804.1	2468608	2468679	R	tRNA-Val	complement(2468608..2468679)	Mycobacterium bovis BCG str. Mexico	11810530
BCGMEX_t0024	tRNA	metV	NC_016804.1	2538224	2538297	R	tRNA-Met	complement(2538224..2538297)	Mycobacterium bovis BCG str. Mexico	11810606
BCGMEX_t0025	tRNA	asnT	NC_016804.1	2575869	2575941	R	tRNA-Asn	complement(2575869..2575941)	Mycobacterium bovis BCG str. Mexico	11810642
BCGMEX_t0026	tRNA	proU	NC_016804.1	2709866	2709939	R	tRNA-Pro	complement(2709866..2709939)	Mycobacterium bovis BCG str. Mexico	11810763
BCGMEX_t0027	tRNA	glyV	NC_016804.1	2710076	2710146	D	tRNA-Gly	2710076..2710146	Mycobacterium bovis BCG str. Mexico	11810764
BCGMEX_t0028	tRNA	argW	NC_016804.1	2737350	2737423	D	tRNA-Arg	2737350..2737423	Mycobacterium bovis BCG str. Mexico	11810787
BCGMEX_t0029	tRNA	hisT	NC_016804.1	2771015	2771087	D	tRNA-His	2771015..2771087	Mycobacterium bovis BCG str. Mexico	11810817
BCGMEX_t0030	tRNA	lysU	NC_016804.1	2778655	2778727	D	tRNA-Lys	2778655..2778727	Mycobacterium bovis BCG str. Mexico	11810826
BCGMEX_t0031	tRNA	valT	NC_016804.1	2913372	2913443	R	tRNA-Val	complement(2913372..2913443)	Mycobacterium bovis BCG str. Mexico	11810960
BCGMEX_t0032	tRNA	glyT	NC_016804.1	2913628	2913700	D	tRNA-Gly	2913628..2913700	Mycobacterium bovis BCG str. Mexico	11810961
BCGMEX_t0033	tRNA	cysU	NC_016804.1	2913730	2913800	D	tRNA-Cys	2913730..2913800	Mycobacterium bovis BCG str. Mexico	11810962
BCGMEX_t0034	tRNA	valU	NC_016804.1	2913817	2913888	D	tRNA-Val	2913817..2913888	Mycobacterium bovis BCG str. Mexico	11810963
BCGMEX_t0035	tRNA	gluU	NC_016804.1	3282399	3282471	R	tRNA-Glu	complement(3282399..3282471)	Mycobacterium bovis BCG str. Mexico	11811308
BCGMEX_t0036	tRNA	glnU	NC_016804.1	3282511	3282582	R	tRNA-Gln	complement(3282511..3282582)	Mycobacterium bovis BCG str. Mexico	11811309
BCGMEX_t0037	tRNA	alaU	NC_016804.1	3365691	3365763	R	tRNA-Ala	complement(3365691..3365763)	Mycobacterium bovis BCG str. Mexico	11811391
BCGMEX_t0038	tRNA	metU	NC_016804.1	3491207	3491280	R	tRNA-Met	complement(3491207..3491280)	Mycobacterium bovis BCG str. Mexico	11811516
BCGMEX_t0039	tRNA	thrU	NC_016804.1	4033751	4033823	R	tRNA-Thr	complement(4033751..4033823)	Mycobacterium bovis BCG str. Mexico	11812007
BCGMEX_t0040	tRNA	proY	NC_016804.1	4079019	4079092	D	tRNA-Pro	4079019..4079092	Mycobacterium bovis BCG str. Mexico	11812053
BCGMEX_t0041	tRNA	serV	NC_016804.1	4121278	4121363	D	tRNA-Ser	4121278..4121363	Mycobacterium bovis BCG str. Mexico	11812095
BCGMEX_t0042	tRNA	serX	NC_016804.1	4150898	4150984	R	tRNA-Ser	complement(4150898..4150984)	Mycobacterium bovis BCG str. Mexico	11812125
BCGMEX_t0043	tRNA	argU	NC_016804.1	4168632	4168704	R	tRNA-Arg	complement(4168632..4168704)	Mycobacterium bovis BCG str. Mexico	11812149
BCGMEX_t0044	tRNA	serT	NC_016804.1	4168735	4168823	R	tRNA-Ser	complement(4168735..4168823)	Mycobacterium bovis BCG str. Mexico	11812150
BCGMEX_t0045	tRNA	serU	NC_016804.1	4174349	4174435	R	tRNA-Ser	complement(4174349..4174435)	Mycobacterium bovis BCG str. Mexico	11812157
BCGMEX_r0001	rRNA	BCGMEX_r0001	NC_016804.1	1468640	1470175	D	16S ribosomal RNA	1468640..1470175	Mycobacterium bovis BCG str. Mexico	11809628
BCGMEX_r0002	rRNA	BCGMEX_r0002	NC_016804.1	1470451	1473588	D	23S ribosomal RNA	1470451..1473588	Mycobacterium bovis BCG str. Mexico	11809629
BCGMEX_r0003	rRNA	BCGMEX_r0003	NC_016804.1	1473692	1473806	D	5S ribosomal RNA	1473692..1473806	Mycobacterium bovis BCG str. Mexico	11809630