-- dump date 20120504_152929 -- class Genbank::repeat_region -- table repeat_region_note -- id note 272631000001 285 bp repeat, shares 98% sequence identity 280/285 with bases 3145214..3145498 272631000002 Dispersed repeat, RLEP, copy 1 272631000003 1329 bp repeat. 100% identical to region 3042159..3043487 272631000004 2 copies of 52 bp repeat, Consensus TTGTTGTTGCCAACATTGCGACGCCACTACCGAGTCTCCACTCCCGGTCCGG 272631000005 3 copies of 21 bp repeat, Consensus GATCAAGCCAGGAATCAAGTT 272631000006 Dispersed repeat, RLEP, copy 2 272631000007 21 bp direct repeat, CCCCAATTGAACCAGGACCCT 272631000008 21 bp direct repeat, CCCCAATTGAACCAGGACCCT 272631000009 570 bp repeat, 100% identitical to region 3112112..3112681, occupied by pseudogene ML2067 272631000010 1006 bp repeat, 96% identical to region 171902..172907 in ML0128 272631000011 1006 bp repeat, 96% identical to region 167887..168892 in ML0125 272631000012 Dispersed repeat, LEPREP, copy 1 272631000013 195 bp sequence found at 5'-end of copies 1 and 3 of LEPREP 272631000014 153 bp repeat, 95% identical to region 2409794..2409946 272631000015 REPLEP region 1, 3'-end most similar to REPLEP 4, 5 and 6 272631000016 21 bp repeat found at 5'-ends of REPLEP copies 1, 2, 6 & 11. 272631000017 Dispersed repeat, REPLEP, copy 1, shows 55% ID to self on complement 272631000018 45 bp REPLEP-associated sequence 272631000019 Dispersed repeat, RLEP, copy 3 272631000020 Dispersed repeat, RLEP, copy 4 272631000021 Dispersed repeat, RLEP, copy 5 272631000022 21 bp direct repeat, TGTTGTCTTAGAGCATTGATT 272631000023 21 bp direct repeat, TGTTGTCTTAGAGCATTGATT 272631000024 14 copies of dinucleotide repeat, AT 272631000025 REPLEP region 2, 5'-end most similar to REPLEP 5 and 6; 3'-end most similar to REPLEP 11 272631000026 Dispersed repeat, REPLEP, copy 2 272631000027 28 bp subsequence of 45 bp REPLEP-associated sequence 272631000028 33 bp sequence found at 5'-end of copies 2 and 7 of LEPREP 272631000029 Dispersed repeat, LEPREP, copy 2 272631000030 21 bp sequence found at 3'-ends of copies 2, 3, 4 and 6 of LEPREP 272631000031 REPLEP region 3, 5'-end most similar to REPLEP 15; 3'-end most similar to REPLEP 14 272631000032 Dispersed repeat, REPLEP, copy 3 272631000033 28 bp subsequence of 45 bp REPLEP-associated sequence 272631000034 Dispersed repeat, RLEP, copy 6 272631000035 274 bp repeat, 99% identity to 2828540..2828813 272631000036 1186 bp repeat, 100% identical to region 3241403..3242588 272631000037 Dispersed repeat, RLEP, copy 7 272631000038 1179 bp 100% identical to region 2003855..2005033 272631000039 740 bp 100% identical to region 2562936..2563675 272631000040 Dispersed repeat, RLEP, copy 8 272631000041 5.6 copies of 27 bp direct repeat, Consensus CCGGTGGTGCCGCCTGGTGGGTTTCCC 272631000042 LEPRPT, copy 1, 1254 bp. Shows 99-100% identity with regions 727207..728460, 1539937..1541188, 1480312..1481018, 2203983..2204515, 691673..691731 272631000043 61 bp repeat found at 3'-end of LEPRPT and 5' to REPLEP 272631000044 LEPRPT, copy 2, 1261 bp 272631000045 61 bp repeat found at 3'-end of LEPRPT and situated 5' to some copies of REPLEP 272631000046 REPLEP region 4, 3'-end most similar to REPLEP 1, 5 and 6 272631000047 Dispersed repeat, REPLEP, copy 4, truncated at 5'-end 272631000048 45 bp REPLEP-associated sequence 272631000049 163 bp repeat, 96% identical to region 982996..983158 272631000050 24 bp direct repeat, Consensus, GATGCCGGAAAGGACCTAGTCTTA 272631000051 24 bp direct repeat, Consensus, GATGCCGGAAAGGACCTAGTCTTA 272631000052 21 bp direct repeat, Consensus, GTAATCCCGCGGACACGCGGC 272631000053 21 bp direct repeat, Consensus, GTAATCCCGCGGACACGCGGC 272631000054 15 tandem copies of dinucleotide repeat, AT 272631000055 Dispersed repeat, RLEP, copy 9 272631000056 740 bp repeat. 100% identical to region 3044255..3044994 272631000057 163 bp repeat, 96% identical to region 754310..754472 272631000058 18 copies of dinucleotide repeat, TA 272631000059 Dispersed repeat, RLEP, copy 10 272631000060 Dispersed repeat, RLEP, copy 11 272631000061 Dispersed repeat, RLEP, copy 12 272631000062 Dispersed repeat, RLEP, copy 13 272631000063 21 bp sequence found at 3'-ends of copies 2, 3, 4 and 6 of LEPREP 272631000064 Dispersed repeat, LEPREP, copy 3 272631000065 195 bp sequence found at 5'-end of copies 1 and 3 of LEPREP 272631000066 4 tandem copies of 10 bp direct repeat, Consensus, TTATTAATAA 272631000067 REPLEP region 5, 5'-end most similar to REPLEP 6; 3'-end most similar to REPLEP 1, 4 and 6 272631000068 21 bp repeat found at 5'-end of REPLEP copies 1, 2, 5, 6 and 11 272631000069 Dispersed repeat, REPLEP, copy 5. Ends of element show similarity, bases 1-95 with 783-880 and vice-versa, 68% identity 272631000070 45 bp REPLEP-associated sequence 272631000071 871 bp repeat, 100% identical to region 2329118..2329988 272631000072 REPLEP region 6, 5'-end most similar to REPLEP 5; 3'-end most similar to REPLEP 1, 4 and 5 272631000073 45 bp REPLEP-associated sequence 272631000074 Dispersed repeat, REPLEP, copy 6 272631000075 100% identical to two adjacent regions separated by 619 bp at positions 1382838..1381770 (1068/1070 bp identical with 1 bp gap) and 1381151..1380273 (879 bp overlap) 272631000076 1063 bp repeat. 100% identical to positions 1382838..1381770 (1068/1070 bp identical with 1 bp gap) 272631000077 879 bp repeat. 100% identical to complement(1380273..1381151) 272631000078 REPLEP region 7, 3'-end most similar to 3'-end of REPLEP 12 272631000079 38 bp subsequence of 45 bp REPLEP associated sequence 272631000080 Dispersed repeat, REPLEP, copy 7 272631000081 29 bp subsequence of 45 bp REPLEP-associated sequence 272631000082 753 bp repeat, 100% identical to region 2655600..2656352 272631000083 100 % identical to bases 1221223..1222101 272631000084 5 copies of 12 bp tandem repeat, Consensus CCTCAACAACCT 272631000085 100 % identical to bases 1220160..1221229 (with a 1 bp gap) 272631000086 Dispersed repeat, RLEP, copy 14 272631000087 Dispersed repeat, RLEP, copy 15 272631000088 86 bp repeat, 97% identical to region 1641317..1641402 272631000089 Dispersed repeat, RLEP, copy 16 272631000090 LEPRPT, copy 3, 715 bp region identical to 1254 bp LEPRPT element. Truncated at 5'-end 272631000091 Dispersed repeat, RLEP, copy 17 272631000092 Dispersed repeat, RLEP, copy 18 272631000093 1054 bp repeat, 100% identical to bases 2233397..2234450 272631000094 50 bp region associated with only one other copy of LEPRPT at 2204517..2204566 272631000095 LEPRPT, copy 4. Shares 99 % sequence identity with bases 727206..728484. 272631000096 61 bp repeat found at 3'-end of LEPRPT and situated 5' to some copies of REPLEP 272631000097 1551 bp repeat, identical in sequence to duplicated region complement(1554201..1555751). 272631000098 1551 bp repeat, identical in sequence to duplicated region complement(1552534..1554084). 272631000099 Dispersed repeat, RLEP, copy 19 272631000100 8 copies of 18 bp tandem repeat, Consensus CGGCCCGCCTGGCCAGTA 272631000101 region containing 7x(C/T)CGCCTGGCCAGTACGGC and 1xCCGCCTGGCCAGTAC repeats 272631000102 REPLEP region 8, 3'-end most similar to REPLEP 10 272631000103 28 bp subsequence of 45 bp REPLEP-associated sequence 272631000104 Dispersed repeat, REPLEP, copy 8 272631000105 Dispersed repeat, RLEP, copy 20 272631000106 86 bp repeat, 97% identical to region 1428085..1428170 272631000107 Dispersed repeat, RLEP, copy 21 272631000108 Dispersed repeat, RLEP, copy 22 272631000109 27 bp repeat upstream of 45 bp repeat associated with REPLEP 272631000110 REPLEP region, copy 9; 5'-end most similar to REPLEP 13; truncated at 3'-end 272631000111 45 bp REPLEP-associated sequence 272631000112 Dispersed repeat, REPLEP, copy 9; truncated at 3'-end 272631000113 Dispersed repeat, RLEP, copy 23 272631000114 7 copies of 6 bp tandem repeat, Consensus GCACCT 272631000115 REPLEP region 10, 3'-end most similar to REPLEP8 272631000116 28 bp subsequence of 45 bp REPLEP-associated sequence 272631000117 Dispersed repeat, REPLEP, copy 10 272631000118 27 bp subsequence of 45 bp REPLEP-associated sequence 272631000119 Dispersed repeat, RLEP, copy 24 272631000120 Dispersed repeat, RLEP, copy 25 272631000121 Dispersed repeat, RLEP, copy 26 272631000122 Dispersed repeat, RLEP, copy 27 272631000123 1179 bp 100% identical to region 545582..544404 272631000124 REPLEP region 11, 5-end most similar to REPLEP 2, 5 and 6; 3'-end most similar to REPLEP 2 272631000125 Dispersed repeat, REPLEP, copy 11 272631000126 28 bp subsequence of 45 bp REPLEP-associated sequence 272631000127 Dispersed repeat, RLEP, copy 28 272631000128 1261 bp repeat, 100% identical to complement(2207445..2208705) 272631000129 21 bp sequence found at 3'-ends of copies 2, 3, 4 and 6 of LEPREP 272631000130 Dispersed repeat, LEPREP, copy 4, truncated at 5'-end 272631000131 Dispersed repeat, RLEP, copy 29 272631000132 Dispersed repeat, RLEP, copy 30 272631000133 REPLEP region 12, 3'-end most similar to REPLEP 7 272631000134 Dispersed repeat, REPLEP, copy 12, truncated at 5'-end 272631000135 38 bp subsequence of 45 bp REPLEP associated sequence 272631000136 38 bp subsequence of 45 bp REPLEP associated sequence 272631000137 LEPRPT, copy 5, 605 bp identical to 3' part of LEPRPT. Last 50 bp only present in this copy and in one other at 1539935..1539886 272631000138 50 bp repeat, associated with only 2 copies of LEPRPT 272631000139 1261 bp repeat, 100% identical to region 2113323..2114583 272631000140 Dispersed repeat, LEPREP, copy 5. Truncated at 3'-end 272631000141 1054 bp repeat, 100% identical to bases 1538642..1539695 272631000142 310 bp repeat. Identical to region complement(2887367..2887676) 272631000143 61 bp repeat. 86% identical to positions 2932108..2932168 (53/61) 272631000144 Dispersed repeat, RLEP, copy 31 272631000145 Dispersed repeat, RLEP, copy 32 272631000146 871 bp repeat, 100% identical to region 1212166..1213036 272631000147 REPLEP region 13, 5'-end most similar to REPLEP 9; 3'-end most similar to REPLEP 3 and 14 272631000148 45 bp REPLEP-associated sequence 272631000149 Dispersed repeat, REPLEP, copy 13 272631000150 28 bp subsequence of 45 bp REPLEP-associated sequence 272631000151 Dispersed repeat, RLEP, copy 33 272631000152 Dispersed repeat, LEPREP, copy 6 272631000153 146 bp sequence found at 5'-end of copies 6 and 7 of LEPREP 272631000154 153 bp repeat, 95% identical to region 208823..208975 272631000155 146 bp sequence found at 5'-end of copies 6 and 7 of LEPREP 272631000156 Dispersed repeat, LEPREP, copy 7 272631000157 17 bp sequence found at 3'-end of copies 2, 3, 4 and 8 of LEPREP. NB in the other copies this sequence is 21 bp long 272631000158 422 bp repeat, 100% identical to region 2504357..2504778 272631000159 422 bp repeat, 100% identical to region 2502006..2502427 272631000160 740 bp repeat, 100% identical to region 547230..547967 272631000161 9 copies of GTA triplet repeat 272631000162 17 copies of AT repeat 272631000163 753 bp repeat, 100% identical to region 1293273..1294025 272631000164 Dispersed repeat, RLEP, copy 34 272631000165 21 copies of triplet repeat, GAA 272631000166 1391 bp repeat, 100% identical to region 2818807..2820197 272631000167 115 bp repeat, 97% identical to region 2820282..2820396 272631000168 1391 bp repeat, 100% identical to region 2813398..2814788 272631000169 115 bp repeat, 97% identical to region 2814882..2814996 272631000170 274 bp repeat, 99% identical to region 421979..422252 272631000171 Dispersed repeat, RLEP, copy 35 272631000172 shares 100% sequence identity with bases 2848573.. 2849765 272631000173 shares 99% sequence identity with bases complement(2842477..2843695) 272631000174 REPLEP region 14, 3'-end most similar to REPLEP 3 272631000175 Dispersed repeat, REPLEP, copy 14 272631000176 28 bp subsequence of 45 bp REPLEP-associated sequence 272631000177 2.8 copies of 30 bp tandem repeat Consensus, GGCGGAGGTGGCGGGTAAGAACCGCCGGGC 272631000178 262 bp repeat, 99% identical to region 3194229..3194490 272631000179 REPLEP region 15, 5'-end most similar to REPLEP 3 272631000180 Dispersed repeat, REPLEP, copy 15; truncated at 3'-end 272631000181 310 bp repeat, 100% identical to region 2264780..2265089 272631000182 3 copies of 15 bp tandem repeat Consensus, CCTTCTTGGCCGGAG 272631000183 61 bp repeat. 86% identical to positions 2285671..2285731 (53/61) 272631000184 704 bp repeat; 100% identical to complement(2933129..2933832) 272631000185 704 bp repeat; 100% identical to complement(2932164..2932867) 272631000186 28 bp subsequence of 45-bp REPLEP-associated sequence but not linked to REPLEP in this case 272631000187 Dispersed repeat, RLEP, copy 36 272631000188 3 copies of 23 bp repeat, Consensus ATAATACTGTAGTGAACGACATC 272631000189 33 bp sequence found at 5'-end of copies 2 and 7 of LEPREP 272631000190 Dispersed repeat, LEPREP, copy 8; truncated at 3'-end 272631000191 Dispersed repeat; similar but not identical to region near 5'-end of LEPREP; 92% identity in 179 bp stretch 272631000192 1329 bp repeat. Shares 100 % sequence identity with bases 49168..50496 272631000193 740 bp repeat. 100% identical to complement(980403..981142) 272631000194 847 bp repeat, 100% identical to region 3142534..3143380 272631000195 570 bp repeat, 100% identical to region 128108..128677 in pks13 gene 272631000196 847 bp repeat, 100% identical to region 3089613..3090459 272631000197 285 bp repeat, 98% (280/285) identical to region complement (11473..11189) 272631000198 262 bp repeat, 99% identical to region 2870010..2870271 272631000199 1186 bp repeat, 100% identical to bases 492656..493841 272631000200 Dispersed repeat, RLEP, copy 37