-- dump date   	20120504_153402
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_004046762.1	identified by match to protein family HMM PF00308; match to protein family HMM PF08299; match to protein family HMM TIGR00362
YP_004046763.1	identified by match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663
YP_004046764.1	identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334
YP_004046765.1	identified by match to protein family HMM PF00398; match to protein family HMM TIGR00755
YP_004046767.1	identified by match to protein family HMM PF00383
YP_004046768.1	identified by match to protein family HMM TIGR02397
YP_004046769.1	identified by match to protein family HMM PF01751
YP_004046770.1	identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041
YP_004046772.1	identified by match to protein family HMM PF01170; match to protein family HMM PF05175
YP_004046773.1	identified by match to protein family HMM PF01418
YP_004046774.1	identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432
YP_004046776.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241
YP_004046778.1	identified by match to protein family HMM PF03547
YP_004046779.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_004046782.1	This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.
YP_004046783.1	This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM TIGR02167
YP_004046784.1	identified by match to protein family HMM PF02687
YP_004046785.1	identified by match to protein family HMM PF08178
YP_004046786.1	identified by match to protein family HMM PF01430
YP_004046787.1	identified by match to protein family HMM PF00005
YP_004046788.1	identified by match to protein family HMM PF02525
YP_004046789.1	identified by match to protein family HMM PF00313
YP_004046790.1	identified by match to protein family HMM PF01250; match to protein family HMM TIGR00166
YP_004046791.1	identified by match to protein family HMM PF00436; match to protein family HMM PF01336; match to protein family HMM TIGR00621
YP_004046792.1	identified by match to protein family HMM PF01084; match to protein family HMM TIGR00165
YP_004046793.1	identified by match to protein family HMM PF04326
YP_004046794.1	identified by match to protein family HMM PF02302
YP_004046795.1	identified by match to protein family HMM PF00106
YP_004046796.1	identified by match to protein family HMM PF00359
YP_004046797.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_004046798.1	identified by match to protein family HMM PF01232; match to protein family HMM PF08125
YP_004046799.1	identified by match to protein family HMM TIGR03490
YP_004046800.1	identified by match to protein family HMM TIGR03490
YP_004046801.1	MSB_A0042 encodes the 3' terminal ORF of a Tra Island that is integrated into a lppA/p72 family lipoprotein gene. Tra Island encodes MSB_A0042-MSB_A0073. ORF exhibits similarity to MCAP_0315, the 3' terminal ORF of Tra Island I of Mycoplasma capricolum Kid.; identified by match to protein family HMM PF00665
YP_004046802.1	HU DNA binding protein homolog encoded within Tra Island. Similar to MCAP_0313 encoded within Tra Island 1 of Mycoplasma capricolum Kid.; identified by match to protein family HMM PF00216
YP_004046803.1	Lipoprotein gene encoded within Tra Island. This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM PF03382; match to protein family HMM TIGR02167
YP_004046804.1	Encoded within Tra Island. This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM PF03382; match to protein family HMM TIGR02167
YP_004046805.1	ORF encoded within Tra Island; similar to MCAP_0281 of Tra Island 1 of Mycoplasma capricolum Kid; identified by similarity to GB:ABC01251.1; match to protein family HMM PF00436
YP_004046806.1	ORF encoded within Tra Island; similar to MCAP_0539 of Mycoplasma capricolum Kid
YP_004046807.1	ORF encoded within Tra Island; similar to MCAP_0307 of Mycoplasma capricolum Kid Tra Island I
YP_004046808.1	ORF encoded by Tra Island has similarity to MSC_0204 of Mycoplasma mycoides SC strain PG1. MSC_0204 is shorter due to a possible frameshift mutation.
YP_004046809.1	ORF encoded within Tra Island. This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM PF03382; match to protein family HMM TIGR02167
YP_004046810.1	ORF encoded within Tra Island; similar to MCAP_0299 of Mycoplasma capricolum Kid Tra Island I. ORF has strong homology to four tandem ORFs MSC_0195-MSC_0198 of Mycoplasma mycoides SC strain PG1. Three frameshift mutations may occur in strain PG1.
YP_004046811.1	ORF encoded within Tra Island; similar to MCAP_0301 of Mycoplasma capricolum Kid Tra Island I. TraE/TrsE family protein.
YP_004046812.1	ORF encoded by Tra Island; similar to MCAP_0303 of Tra Island I of Mycoplasma capricolum Kid.
YP_004046813.1	ORF encoded within Tra Island; similar to MCAP_0304 of Tra Island I in Mycoplasma capricolum Kid; identified by match to protein family HMM PF02817
YP_004046814.1	ORF encoded within Tra Island; similar to a membrane protein MCAP_0305 of Mycoplasma capricolum Tra Island I.
YP_004046815.1	ORF encoded within Tra Island. This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM PF03382; match to protein family HMM TIGR02167
YP_004046816.1	ORF encoded within Tra Island. This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM PF03382; match to protein family HMM TIGR02167
YP_004046817.1	ORF encoded within Tra Island; similar to MSC_0497 of Mycoplasma mycoides SC PG1.; identified by match to protein family HMM PF01336; match to protein family HMM PF01966
YP_004046818.1	ORF encoded by Tra Island; identified by glimmer; putative
YP_004046819.1	ORF encoded within Tra Island; similar to MCAP_0107 of Mycoplasma capricolum Kid; identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665
YP_004046820.1	ORF encoded within Tra Island; exhibits similarity to MCAP_0285 of Tra Island I in Mycoplasma capricolum Kid. ORF may contain inframe stop codon as homology to MCAP_0285 extends beyond stop codon.
YP_004046821.1	ORF encoded within Tra Island; similar to MCAP_0284 of Tra Island I of Mycoplasma capricolum Kid
YP_004046822.1	ORF encoded within Tra Island; similar to MCAP_0283 in Tra Island I of Mycoplasma capricolum Kid
YP_004046823.1	ORF encoded within Tra Island; exhibits strong sequence homology to MCAP_0184 and MCAP_0282, each of which is encoded within a distinct Tra Island in Mycoplasma capricolum Kid. ORF has similarity to ParA/Soj family proteins at N-terminus.
YP_004046824.1	ORF encoded within Tra Island; similar to MSB_A0046 paralog and MCAP_0539 of Mycoplasma capricolum Kid
YP_004046825.1	ORF encoded within Tra Island; identified by glimmer; putative
YP_004046826.1	ORF encoded within Tra Island; similar to MCAP_0280 of Tra Island I of Mycoplasma capricolum Kid
YP_004046827.1	ORF encoded within Tra Island; identified by glimmer; putative
YP_004046828.1	ORF encoded within Tra Island; similar to MCAP_0277 in Tra Island I of Mycoplasma capricolum Kid. ORF has homology to multiple proteins of Rep2 family, but is encoded within Tra Island of M. leachii chromosome.
YP_004046829.1	ORF encoded within Tra Island; similar to MCAP_0279 of Tra Island I of Mycoplasma capricolum Kid; identified by glimmer; putative
YP_004046830.1	ORF encoded within Tra Island with homology to multiple single-strand DNA binding proteins; identified by match to protein family HMM PF00436; match to protein family HMM PF01336; match to protein family HMM TIGR00621
YP_004046831.1	ORF encoded within Tra Island; identified by glimmer; putative
YP_004046832.1	MSB_A0073 is the 5' terminal ORF of Tra Island. This integrative unit spans MSB_A0042-MSB_A0073. ORF similar to MCAP_0274 the 5' terminal ORF of Tra Island I of Mycoplasma capricolum Kid. ORF also has homology to Mycoplasma yeatsii plasmid-encoded ORF pMyBK1_02.
YP_004046833.1	MSB_A0041 and MSB_A0074 encode a lipoprotein gene (lppA/p72 family) that is interrupted by the insertion of a Tra Island, an integrated DNA containing MSB_A0042-MSB_A0073; identified by match to protein family HMM TIGR03490; interruption N
YP_004046834.1	identified by match to protein family HMM PF09334; match to protein family HMM TIGR00398
YP_004046836.1	identified by match to protein family HMM PF00005
YP_004046837.1	identified by match to protein family HMM PF02653
YP_004046838.1	identified by match to protein family HMM PF02653
YP_004046839.1	identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063
YP_004046840.1	identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059
YP_004046841.1	ORF contains 5 membrane spanning regions in addition to the lipoprotein signal peptide.
YP_004046843.1	identified by match to protein family HMM PF00271; match to protein family HMM PF01043; match to protein family HMM PF07516; match to protein family HMM PF07517; match to protein family HMM TIGR00963
YP_004046844.1	identified by match to protein family HMM PF01205
YP_004046845.1	identified by match to protein family HMM PF01367; match to protein family HMM PF02739
YP_004046846.1	identified by glimmer; putative
YP_004046847.1	identified by match to protein family HMM PF02384
YP_004046849.1	identified by match to protein family HMM PF01420
YP_004046854.1	identified by match to protein family HMM PF01121; match to protein family HMM TIGR00152
YP_004046855.1	identified by match to protein family HMM PF01479; match to protein family HMM PF01728
YP_004046857.1	identified by match to protein family HMM PF01336; match to protein family HMM PF02601; match to protein family HMM TIGR00237
YP_004046858.1	identified by match to protein family HMM PF01029; match to protein family HMM TIGR01951
YP_004046860.1	identified by match to protein family HMM PF01261; match to protein family HMM TIGR00587
YP_004046861.1	identified by match to protein family HMM PF01687
YP_004046862.1	identified by match to protein family HMM PF00535
YP_004046863.1	identified by match to protein family HMM PF00483
YP_004046864.1	identified by match to protein family HMM PF00298; match to protein family HMM PF03946; match to protein family HMM TIGR01632
YP_004046865.1	identified by match to protein family HMM PF00687; match to protein family HMM TIGR01169
YP_004046870.1	Tandem dinucleotide repeats of TA occur 5' of the ORF in a promoter region; this tract is possibly subject to indels governing phase variable expression of the gene.
YP_004046871.1	This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM TIGR02167
YP_004046872.1	identified by match to protein family HMM PF00466
YP_004046873.1	identified by match to protein family HMM PF00542; match to protein family HMM TIGR00855
YP_004046875.1	identified by match to protein family HMM PF00562; match to protein family HMM PF04560; match to protein family HMM PF04561; match to protein family HMM PF04563; match to protein family HMM PF04565; match to protein family HMM TIGR02013
YP_004046876.1	identified by match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000; match to protein family HMM TIGR02386
YP_004046877.1	identified by glimmer; putative
YP_004046880.1	identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120
YP_004046881.1	identified by match to protein family HMM PF00464
YP_004046882.1	identified by match to protein family HMM PF00156; match to protein family HMM TIGR01091
YP_004046884.1	identified by match to protein family HMM PF00119
YP_004046885.1	identified by match to protein family HMM PF00137; match to protein family HMM TIGR01260
YP_004046886.1	identified by match to protein family HMM PF00430; match to protein family HMM TIGR01144
YP_004046887.1	identified by match to protein family HMM PF00213; match to protein family HMM TIGR01145
YP_004046888.1	identified by match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM PF09378; match to protein family HMM TIGR00962
YP_004046889.1	identified by match to protein family HMM PF00231; match to protein family HMM TIGR01146
YP_004046890.1	identified by match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM TIGR01039
YP_004046891.1	identified by match to protein family HMM PF02823
YP_004046893.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524
YP_004046894.1	identified by match to protein family HMM PF00480
YP_004046895.1	identified by match to protein family HMM PF00144
YP_004046896.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826
YP_004046899.1	identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086
YP_004046900.1	identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358
YP_004046901.1	identified by match to protein family HMM TIGR00810
YP_004046902.1	identified by match to protein family HMM PF00268
YP_004046903.1	identified by match to protein family HMM PF07972; match to protein family HMM TIGR00333
YP_004046904.1	identified by match to protein family HMM PF00317; match to protein family HMM PF02867; match to protein family HMM PF08343; match to protein family HMM TIGR02506
YP_004046905.1	identified by match to protein family HMM PF00156; match to protein family HMM TIGR01251
YP_004046906.1	identified by match to protein family HMM PF01195; match to protein family HMM TIGR00447
YP_004046907.1	identified by match to protein family HMM PF01281; match to protein family HMM PF03948; match to protein family HMM TIGR00158
YP_004046908.1	identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665
YP_004046911.1	identified by match to protein family HMM PF01406; match to protein family HMM PF09334; match to protein family HMM TIGR00435
YP_004046912.1	identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186
YP_004046913.1	identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023
YP_004046914.1	identified by match to protein family HMM TIGR00964
YP_004046915.1	identified by match to protein family HMM PF02357
YP_004046916.1	identified by glimmer; putative
YP_004046918.1	identified by match to protein family HMM PF00496
YP_004046919.1	identified by match to protein family HMM PF00528
YP_004046920.1	identified by match to protein family HMM PF00528
YP_004046921.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727
YP_004046922.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352
YP_004046924.1	identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023
YP_004046925.1	identified by match to protein family HMM PF00005
YP_004046926.1	identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010
YP_004046927.1	identified by match to protein family HMM PF00291; match to protein family HMM TIGR01127
YP_004046930.1	Tandem dinucleotide repeats of TA occur 5' of the ORF in a promoter region; this tract is possibly subject to indels governing phase variable expression of the gene.
YP_004046932.1	identified by match to protein family HMM PF07672; match to protein family HMM PF07690
YP_004046933.1	identified by match to protein family HMM PF01182
YP_004046934.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378
YP_004046935.1	identified by match to protein family HMM PF00749; match to protein family HMM TIGR00464
YP_004046936.1	identified by match to protein family HMM PF01966
YP_004046938.1	identified by match to protein family HMM PF00117; match to protein family HMM PF06418; match to protein family HMM TIGR00337
YP_004046939.1	This ORF has 2 membrane spanning regions. This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM PF03382; match to protein family HMM TIGR02167
YP_004046940.1	This ORF has 2 membrane spanning regions. This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM PF03382; match to protein family HMM TIGR02167
YP_004046941.1	identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859
YP_004046942.1	identified by match to protein family HMM PF00004; match to protein family HMM PF07728
YP_004046946.1	identified by match to protein family HMM PF03009
YP_004046947.1	identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105
YP_004046949.1	identified by match to protein family HMM PF01368; match to protein family HMM PF02272
YP_004046950.1	identified by match to protein family HMM PF00265
YP_004046951.1	identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00019
YP_004046952.1	identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; match to protein family HMM TIGR03534
YP_004046957.1	identified by match to protein family HMM PF00614
YP_004046958.1	identified by match to protein family HMM PF00164; match to protein family HMM TIGR00981
YP_004046959.1	identified by match to protein family HMM PF00177; match to protein family HMM TIGR01029
YP_004046960.1	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231; match to protein family HMM TIGR00484
YP_004046961.1	identified by match to protein family HMM PF00009; match to protein family HMM PF03143; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00485
YP_004046962.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378
YP_004046963.1	identified by match to protein family HMM PF01055
YP_004046964.1	identified by match to protein family HMM PF00883
YP_004046966.1	This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM PF03382; match to protein family HMM TIGR02167
YP_004046967.1	identified by match to protein family HMM PF01411; match to protein family HMM PF07973; match to protein family HMM TIGR00344
YP_004046969.1	identified by match to protein family HMM PF00528
YP_004046970.1	identified by match to protein family HMM PF00528
YP_004046971.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727
YP_004046972.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352
YP_004046974.1	identified by match to protein family HMM PF04221; match to protein family HMM TIGR02384
YP_004046977.1	identified by match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_004046978.1	identified by match to protein family HMM TIGR03490
YP_004046979.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01990; match to protein family HMM TIGR02009
YP_004046980.1	identified by match to protein family HMM PF00128; match to protein family HMM PF02903
YP_004046981.1	identified by match to protein family HMM PF00128; match to protein family HMM PF02903
YP_004046984.1	identified by glimmer; putative
YP_004046985.1	identified by match to protein family HMM PF00528
YP_004046986.1	identified by match to protein family HMM PF00528
YP_004046987.1	identified by match to protein family HMM PF00005
YP_004046988.1	identified by match to protein family HMM PF03632; match to protein family HMM PF03633; match to protein family HMM PF03636
YP_004046989.1	identified by match to protein family HMM PF00128
YP_004046990.1	identified by match to protein family HMM PF00392
YP_004046991.1	identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181
YP_004046993.1	identified by match to protein family HMM PF00883
YP_004046995.1	identified by match to protein family HMM PF02417
YP_004046996.1	identified by glimmer; putative
YP_004046997.1	identified by match to protein family HMM PF07751
YP_004046999.1	identified by match to protein family HMM PF00528
YP_004047000.1	identified by match to protein family HMM PF00528
YP_004047001.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08402
YP_004047002.1	identified by match to protein family HMM PF00453; match to protein family HMM TIGR01032
YP_004047003.1	identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001
YP_004047004.1	identified by match to protein family HMM PF00707; match to protein family HMM PF05198; match to protein family HMM TIGR00168
YP_004047005.1	identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079
YP_004047006.1	identified by match to protein family HMM PF03602
YP_004047007.1	identified by match to protein family HMM PF00625; match to protein family HMM TIGR03263
YP_004047008.1	identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563
YP_004047009.1	identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675
YP_004047011.1	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394
YP_004047013.1	This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.
YP_004047014.1	identified by match to protein family HMM TIGR00274
YP_004047015.1	identified by match to protein family HMM PF02378
YP_004047016.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_004047018.1	identified by match to protein family HMM PF00113; match to protein family HMM PF03952; match to protein family HMM TIGR01060
YP_004047019.1	identified by match to protein family HMM PF01569
YP_004047020.1	identified by match to protein family HMM PF03652; match to protein family HMM TIGR00250
YP_004047021.1	identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203
YP_004047022.1	identified by match to protein family HMM PF00230
YP_004047023.1	identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311
YP_004047024.1	identified by match to protein family HMM PF01266
YP_004047025.1	identified by match to protein family HMM PF00365; match to protein family HMM TIGR02482
YP_004047026.1	identified by match to protein family HMM PF00224; match to protein family HMM TIGR01064
YP_004047027.1	identified by match to protein family HMM PF00587; match to protein family HMM PF02824; match to protein family HMM PF03129; match to protein family HMM TIGR00418
YP_004047028.1	identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992
YP_004047029.1	identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545
YP_004047030.1	identified by match to protein family HMM PF00676; match to protein family HMM TIGR03181
YP_004047031.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_004047032.1	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817
YP_004047033.1	identified by match to protein family HMM PF00070; match to protein family HMM PF00364; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350
YP_004047034.1	identified by match to protein family HMM PF01515; match to protein family HMM TIGR00651
YP_004047035.1	identified by match to protein family HMM PF00871; match to protein family HMM TIGR00016
YP_004047036.1	identified by match to protein family HMM PF01732
YP_004047037.1	identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01510
YP_004047038.1	identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417
YP_004047039.1	identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830
YP_004047041.1	identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365
YP_004047042.1	identified by match to protein family HMM PF03610; match to protein family HMM TIGR02364
YP_004047043.1	identified by match to protein family HMM PF00163; match to protein family HMM PF01479; match to protein family HMM TIGR01017
YP_004047046.1	identified by match to protein family HMM PF02568; match to protein family HMM PF02926; match to protein family HMM PF06508; match to protein family HMM TIGR00342
YP_004047047.1	identified by match to protein family HMM PF03572
YP_004047049.1	This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.
YP_004047051.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494
YP_004047052.1	identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR03598
YP_004047057.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_004047058.1	identified by match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462
YP_004047059.1	identified by match to protein family HMM PF01541; match to protein family HMM PF02151; match to protein family HMM PF08459; match to protein family HMM TIGR00194
YP_004047063.1	identified by match to protein family HMM PF00753
YP_004047064.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_004047065.1	identified by match to protein family HMM PF01513
YP_004047066.1	identified by match to protein family HMM PF00133; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00422
YP_004047067.1	identified by match to protein family HMM PF04263; match to protein family HMM TIGR01378
YP_004047068.1	identified by match to protein family HMM PF00834
YP_004047069.1	identified by match to protein family HMM PF03193; match to protein family HMM TIGR00157
YP_004047070.1	identified by match to protein family HMM PF00069
YP_004047071.1	identified by match to protein family HMM PF00481
YP_004047073.1	identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150
YP_004047074.1	identified by match to protein family HMM PF00814; match to protein family HMM TIGR03725
YP_004047075.1	Tandem dinucleotide repeats of TA occur 5' of the ORF in a promoter region; this tract is possibly subject to indels governing phase variable expression of the gene. This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM PF03382; match to protein family HMM TIGR02167
YP_004047076.1	identified by match to protein family HMM PF02687
YP_004047077.1	identified by glimmer; putative
YP_004047081.1	Tandem dinucleotide repeats of TA occur 5' of the ORF in a promoter region; this tract is possibly subject to indels governing phase variable expression of the gene.
YP_004047083.1	Tandem dinucleotide repeats of TA occur 5' of the ORF in a promoter region; this tract is possibly subject to indels governing phase variable expression of the gene.
YP_004047088.1	identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM PF09180; match to protein family HMM TIGR00408
YP_004047089.1	identified by match to protein family HMM PF00075
YP_004047091.1	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF06421; match to protein family HMM TIGR00231; match to protein family HMM TIGR01393
YP_004047093.1	identified by match to protein family HMM PF00152; match to protein family HMM PF00587; match to protein family HMM PF01336; match to protein family HMM PF02938; match to protein family HMM TIGR00459
YP_004047094.1	identified by match to protein family HMM PF00587; match to protein family HMM TIGR00442
YP_004047095.1	identified by match to protein family HMM PF02033; match to protein family HMM TIGR00082
YP_004047096.1	identified by match to protein family HMM PF01509; match to protein family HMM TIGR00431
YP_004047097.1	identified by match to protein family HMM PF01467; match to protein family HMM PF06574
YP_004047098.1	identified by match to protein family HMM PF03572
YP_004047099.1	identified by match to protein family HMM PF03572
YP_004047100.1	identified by match to protein family HMM PF00312; match to protein family HMM TIGR00952
YP_004047102.1	identified by match to protein family HMM PF00009; match to protein family HMM PF01926; match to protein family HMM PF03144; match to protein family HMM PF04760; match to protein family HMM TIGR00231; match to protein family HMM TIGR00487
YP_004047103.1	identified by match to protein family HMM PF01248
YP_004047104.1	identified by match to protein family HMM PF04296
YP_004047105.1	identified by match to protein family HMM PF08529; match to protein family HMM TIGR01953
YP_004047107.1	identified by match to protein family HMM PF00881
YP_004047108.1	identified by match to protein family HMM PF00929; match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00573; match to protein family HMM TIGR01405
YP_004047109.1	identified by match to protein family HMM PF01148
YP_004047110.1	identified by match to protein family HMM PF00557; match to protein family HMM PF01321
YP_004047111.1	identified by match to protein family HMM PF00579; match to protein family HMM TIGR00233
YP_004047113.1	identified by match to protein family HMM PF02661
YP_004047114.1	identified by match to protein family HMM PF09610
YP_004047116.1	identified by match to protein family HMM PF09610; match to protein family HMM TIGR02184
YP_004047118.1	identified by match to protein family HMM PF09610; match to protein family HMM TIGR02184
YP_004047125.1	identified by match to protein family HMM PF00006
YP_004047126.1	identified by match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM TIGR01039
YP_004047129.1	identified by glimmer; putative
YP_004047131.1	identified by glimmer; putative
YP_004047132.1	identified by match to protein family HMM PF01725; match to protein family HMM TIGR00042
YP_004047133.1	identified by match to protein family HMM PF00588
YP_004047134.1	identified by match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_004047135.1	identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728
YP_004047136.1	identified by match to protein family HMM PF01628; match to protein family HMM TIGR00331
YP_004047137.1	identified by match to protein family HMM PF01025
YP_004047138.1	identified by match to protein family HMM PF00012; match to protein family HMM TIGR02350
YP_004047139.1	identified by match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; match to protein family HMM TIGR02349
YP_004047140.1	identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011
YP_004047141.1	identified by match to protein family HMM PF00627; match to protein family HMM PF00889; match to protein family HMM TIGR00116
YP_004047143.1	identified by match to protein family HMM PF00696; match to protein family HMM TIGR02075
YP_004047144.1	identified by match to protein family HMM PF01765; match to protein family HMM TIGR00496
YP_004047145.1	identified by match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456
YP_004047146.1	identified by match to protein family HMM PF02687
YP_004047148.1	identified by match to protein family HMM PF01409; match to protein family HMM PF02912; match to protein family HMM TIGR00468
YP_004047149.1	identified by match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03484; match to protein family HMM TIGR00472
YP_004047151.1	identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031
YP_004047152.1	identified by match to protein family HMM PF02381
YP_004047153.1	identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006
YP_004047155.1	identified by match to protein family HMM PF00091; match to protein family HMM PF03953; match to protein family HMM TIGR00065
YP_004047158.1	identified by match to protein family HMM PF00133; match to protein family HMM PF06827; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00392
YP_004047160.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005
YP_004047162.1	identified by match to protein family HMM PF00383
YP_004047164.1	identified by match to protein family HMM PF01648; match to protein family HMM TIGR00556
YP_004047166.1	identified by match to protein family HMM PF01553
YP_004047169.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096
YP_004047171.1	identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061
YP_004047172.1	identified by match to protein family HMM PF04327
YP_004047173.1	identified by match to protein family HMM PF01016; match to protein family HMM TIGR00062
YP_004047174.1	identified by match to protein family HMM PF00701
YP_004047175.1	identified by match to protein family HMM PF00474
YP_004047176.1	identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022
YP_004047177.1	identified by match to protein family HMM PF00480
YP_004047178.1	identified by match to protein family HMM PF04131
YP_004047179.1	identified by match to protein family HMM PF01546; match to protein family HMM TIGR01887
YP_004047181.1	identified by match to protein family HMM PF00485; match to protein family HMM TIGR00235
YP_004047182.1	identified by match to protein family HMM PF00112
YP_004047183.1	identified by match to protein family HMM PF00817
YP_004047184.1	identified by match to protein family HMM TIGR03597
YP_004047188.1	identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992
YP_004047189.1	identified by match to protein family HMM PF00004; match to protein family HMM PF05491; match to protein family HMM PF05496; match to protein family HMM PF07728
YP_004047191.1	identified by match to protein family HMM TIGR00030
YP_004047192.1	Tandem dinucleotide repeats of TA occur 5' of the ORF in a promoter region; this tract is possibly subject to indels governing phase variable expression of the gene.
YP_004047197.1	identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221
YP_004047198.1	identified by match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771
YP_004047199.1	identified by match to protein family HMM PF00561
YP_004047200.1	identified by match to protein family HMM PF00561
YP_004047201.1	identified by match to protein family HMM PF00561
YP_004047204.1	identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545
YP_004047205.1	identified by match to protein family HMM PF00724
YP_004047206.1	This ORF has 1 membrane spanning region, C-terminal. This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM PF03382; match to protein family HMM TIGR02167
YP_004047208.1	identified by match to protein family HMM PF03202
YP_004047209.1	identified by match to protein family HMM PF00528
YP_004047211.1	identified by match to protein family HMM PF00005
YP_004047214.1	identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01061
YP_004047215.1	identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF02518; match to protein family HMM TIGR01058
YP_004047216.1	identified by match to protein family HMM PF02302; match to protein family HMM PF02378
YP_004047217.1	identified by match to protein family HMM PF00359
YP_004047218.1	identified by match to protein family HMM PF00393; match to protein family HMM PF03446; match to protein family HMM TIGR00872
YP_004047219.1	identified by match to protein family HMM PF00171
YP_004047220.1	identified by match to protein family HMM PF00588; match to protein family HMM PF08032
YP_004047221.1	identified by match to protein family HMM PF08761
YP_004047223.1	identified by match to protein family HMM PF00342
YP_004047224.1	identified by match to protein family HMM PF01431; match to protein family HMM PF05649
YP_004047225.1	identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727
YP_004047226.1	identified by match to protein family HMM PF01592
YP_004047227.1	identified by match to protein family HMM PF00266
YP_004047228.1	overlaps another CDS with the same product name
YP_004047229.1	overlaps another CDS with the same product name
YP_004047230.1	identified by match to protein family HMM PF01230
YP_004047231.1	identified by match to protein family HMM PF01336; match to protein family HMM PF01966
YP_004047232.1	identified by match to protein family HMM PF03167
YP_004047233.1	identified by match to protein family HMM PF01238
YP_004047234.1	identified by match to protein family HMM PF01134; match to protein family HMM TIGR00137
YP_004047235.1	identified by match to protein family HMM PF03932
YP_004047236.1	identified by match to protein family HMM PF00438; match to protein family HMM PF02772; match to protein family HMM PF02773; match to protein family HMM TIGR01034
YP_004047237.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR00282
YP_004047238.1	identified by match to protein family HMM PF04297; match to protein family HMM PF04967
YP_004047239.1	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064
YP_004047240.1	identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135
YP_004047241.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR00972
YP_004047242.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; match to protein family HMM TIGR02138
YP_004047245.1	identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009
YP_004047247.1	identified by match to protein family HMM PF02734; match to protein family HMM TIGR03599
YP_004047248.1	identified by match to protein family HMM PF02504; match to protein family HMM TIGR00182
YP_004047249.1	identified by match to protein family HMM PF00035; match to protein family HMM PF00636; match to protein family HMM TIGR02191
YP_004047252.1	This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM PF03382; match to protein family HMM TIGR02167
YP_004047253.1	identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR02168
YP_004047254.1	identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691
YP_004047255.1	identified by match to protein family HMM PF00156; match to protein family HMM TIGR01090
YP_004047257.1	identified by match to protein family HMM PF02588
YP_004047258.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_004047259.1	identified by match to protein family HMM PF01784
YP_004047260.1	identified by match to protein family HMM PF04816
YP_004047261.1	identified by match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM TIGR02937
YP_004047262.1	identified by match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM PF08275; match to protein family HMM TIGR01391
YP_004047263.1	identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00389
YP_004047264.1	identified by match to protein family HMM PF02565; match to protein family HMM TIGR00613
YP_004047265.1	identified by match to protein family HMM PF01926; match to protein family HMM PF07650; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR00436
YP_004047266.1	identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043
YP_004047267.1	identified by match to protein family HMM PF03412
YP_004047268.1	identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383
YP_004047269.1	identified by match to protein family HMM PF02687
YP_004047271.1	overlaps another CDS with the same product name
YP_004047272.1	overlaps another CDS with the same product name
YP_004047274.1	identified by match to protein family HMM PF00004
YP_004047275.1	identified by match to protein family HMM PF00004; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763
YP_004047276.1	identified by match to protein family HMM PF00254; match to protein family HMM PF05697; match to protein family HMM PF05698; match to protein family HMM TIGR00115
YP_004047278.1	identified by match to protein family HMM PF01132; match to protein family HMM PF08207; match to protein family HMM PF09285; match to protein family HMM TIGR00038
YP_004047279.1	identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460
YP_004047282.1	identified by match to protein family HMM PF03054; match to protein family HMM TIGR00420
YP_004047288.1	identified by match to protein family HMM PF01048; match to protein family HMM TIGR01704
YP_004047289.1	identified by match to protein family HMM PF01467; match to protein family HMM PF01966; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482; match to protein family HMM TIGR00488
YP_004047291.1	identified by match to protein family HMM PF02540; match to protein family HMM PF06508; match to protein family HMM TIGR00552
YP_004047292.1	identified by match to protein family HMM PF01018; match to protein family HMM PF01926; match to protein family HMM PF09269; match to protein family HMM TIGR00231; match to protein family HMM TIGR02729; match to protein family HMM TIGR03595
YP_004047296.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_004047297.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_004047298.1	identified by match to protein family HMM PF00436
YP_004047301.1	This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM PF03382; match to protein family HMM TIGR02167
YP_004047303.1	identified by match to protein family HMM PF01351
YP_004047304.1	identified by match to protein family HMM PF01926; match to protein family HMM TIGR03596
YP_004047305.1	identified by match to protein family HMM PF01245; match to protein family HMM TIGR01024
YP_004047306.1	identified by match to protein family HMM PF01746; match to protein family HMM TIGR00088
YP_004047307.1	identified by match to protein family HMM PF01782; match to protein family HMM TIGR02273
YP_004047308.1	identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002
YP_004047309.1	identified by match to protein family HMM PF02590
YP_004047310.1	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959
YP_004047311.1	identified by match to protein family HMM PF00013; match to protein family HMM PF01966; match to protein family HMM PF08668; match to protein family HMM TIGR00277; match to protein family HMM TIGR03319
YP_004047312.1	identified by match to protein family HMM PF00154; match to protein family HMM TIGR02012
YP_004047313.1	identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199
YP_004047314.1	This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM PF03382; match to protein family HMM TIGR02167
YP_004047315.1	This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM PF03382; match to protein family HMM TIGR02167
YP_004047316.1	identified by match to protein family HMM TIGR03544
YP_004047317.1	identified by match to protein family HMM PF03838
YP_004047319.1	identified by match to protein family HMM PF00216
YP_004047320.1	identified by match to protein family HMM PF01210; match to protein family HMM PF07479
YP_004047321.1	identified by match to protein family HMM PF00071; match to protein family HMM PF01926; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR03594
YP_004047322.1	identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017
YP_004047325.1	identified by match to protein family HMM PF00719
YP_004047328.1	identified by glimmer; putative
YP_004047330.1	This ORF has 1 membrane spanning region, N-terminal. This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM PF03382; match to protein family HMM TIGR02167
YP_004047334.1	identified by match to protein family HMM PF00665
YP_004047336.1	ORF contains 1 membrane spanning region in addition to the lipoprotein signal peptide
YP_004047337.1	identified by match to protein family HMM PF00834
YP_004047338.1	identified by match to protein family HMM PF02302; match to protein family HMM PF04215
YP_004047339.1	identified by match to protein family HMM PF00359
YP_004047340.1	Tandem dinucleotide repeats of TA occur 5' of the ORF in a promoter region; this tract is possibly subject to indels governing phase variable expression of the gene.
YP_004047341.1	Tandem dinucleotide repeats of TA occur 5' of the ORF in a promoter region; this tract is possibly subject to indels governing phase variable expression of the gene.
YP_004047342.1	identified by glimmer; putative
YP_004047343.1	Tandem dinucleotide repeats of TA occur 5' of the ORF in a promoter region; this tract is possibly subject to indels governing phase variable expression of the gene.
YP_004047345.1	identified by match to protein family HMM PF01709
YP_004047346.1	identified by match to protein family HMM PF01712
YP_004047347.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_004047348.1	identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281
YP_004047349.1	identified by match to protein family HMM PF02616
YP_004047353.1	identified by match to protein family HMM PF03672
YP_004047354.1	identified by match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232
YP_004047357.1	identified by match to protein family HMM PF01134
YP_004047358.1	identified by match to protein family HMM PF02646
YP_004047362.1	identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167
YP_004047363.1	identified by match to protein family HMM PF00455; match to protein family HMM PF08220
YP_004047364.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378
YP_004047365.1	identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168
YP_004047369.1	This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM PF03382; match to protein family HMM TIGR02167
YP_004047372.1	identified by match to protein family HMM PF00753; match to protein family HMM PF07521
YP_004047375.1	This ORF has 1 membrane spanning region, C-terminal. This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM PF03382; match to protein family HMM TIGR02167
YP_004047376.1	This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM TIGR02167
YP_004047378.1	overlaps another CDS with the same product name
YP_004047379.1	overlaps another CDS with the same product name
YP_004047380.1	overlaps another CDS with the same product name
YP_004047383.1	identified by match to protein family HMM PF04011
YP_004047384.1	Expression of translation product is demonstrated by specific antibody to a synthetic peptide encoded by the ORF. Product partitions in Triton X-114 phase of detergent fractionated organisms, consistent with a cell-associated lipoprotein encoding an otherwise hydrophilic sequence. Phase variable expression of the product is identified on the surface of the organism by colony immunostaining. Tandem dinucleotide repeats of TA occur 5' of the ORF in a promoter region; this tract is subject to indels governing phase variable expression of the gene.
YP_004047385.1	Tandem dinucleotide repeats of TA occur 5' of the ORF in a promoter region; this tract is possibly subject to indels governing phase variable expression of the gene.
YP_004047386.1	identified by match to protein family HMM PF00162
YP_004047387.1	identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534
YP_004047389.1	identified by match to protein family HMM PF07261
YP_004047390.1	identified by match to protein family HMM PF01149; match to protein family HMM PF06831; match to protein family HMM TIGR00577
YP_004047391.1	identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593
YP_004047392.1	identified by match to protein family HMM PF01336; match to protein family HMM PF07733; match to protein family HMM TIGR00594
YP_004047393.1	identified by match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234
YP_004047395.1	identified by match to protein family HMM PF01588
YP_004047396.1	identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; overlaps another CDS with the same product name
YP_004047397.1	identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; overlaps another CDS with the same product name
YP_004047398.1	identified by match to protein family HMM PF01475
YP_004047399.1	identified by match to protein family HMM PF00550
YP_004047402.1	Expression of translation product confirmed by Western blot using antibody to synthetic peptide based on ORF-specific sequence.; identified by match to protein family HMM PF00696
YP_004047403.1	Expression of translation product confirmed by Western blot using antibody to synthetic peptide based on ORF-specific sequence.; identified by match to protein family HMM PF04371; match to protein family HMM TIGR03380
YP_004047404.1	identified by match to protein family HMM PF00324
YP_004047405.1	Expression of translation product confirmed by Western blot using antibody to synthetic peptide based on ORF-specific sequence.; identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00658
YP_004047406.1	identified by match to protein family HMM PF00005
YP_004047408.1	identified by match to protein family HMM PF00665
YP_004047412.1	identified by match to protein family HMM PF00133; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00396
YP_004047414.1	identified by match to protein family HMM PF00380
YP_004047415.1	identified by match to protein family HMM PF00572; match to protein family HMM TIGR01066
YP_004047416.1	identified by match to protein family HMM PF02687
YP_004047417.1	identified by match to protein family HMM PF01416
YP_004047418.1	identified by match to protein family HMM PF02361
YP_004047419.1	identified by match to protein family HMM PF00005
YP_004047420.1	identified by match to protein family HMM PF00005
YP_004047421.1	identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059
YP_004047422.1	identified by match to protein family HMM PF01000; match to protein family HMM PF01193; match to protein family HMM PF03118; match to protein family HMM TIGR02027
YP_004047423.1	identified by match to protein family HMM PF00411; match to protein family HMM TIGR03632
YP_004047424.1	identified by match to protein family HMM PF00416; match to protein family HMM TIGR03631
YP_004047425.1	identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022
YP_004047426.1	identified by match to protein family HMM PF00575; match to protein family HMM PF01176; match to protein family HMM TIGR00008
YP_004047427.1	identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500
YP_004047428.1	identified by match to protein family HMM PF00406; match to protein family HMM PF05191; match to protein family HMM TIGR01351
YP_004047429.1	identified by match to protein family HMM PF00344; match to protein family HMM TIGR00967
YP_004047430.1	identified by match to protein family HMM PF00256; match to protein family HMM PF01305; match to protein family HMM TIGR01071
YP_004047431.1	identified by match to protein family HMM PF00333; match to protein family HMM PF03719; match to protein family HMM TIGR01021
YP_004047432.1	identified by match to protein family HMM PF00861; match to protein family HMM TIGR00060
YP_004047433.1	identified by match to protein family HMM PF00347; match to protein family HMM TIGR03654
YP_004047434.1	identified by match to protein family HMM PF00410
YP_004047435.1	identified by match to protein family HMM PF00253
YP_004047436.1	identified by match to protein family HMM PF00281; match to protein family HMM PF00673
YP_004047437.1	identified by match to protein family HMM PF00467; match to protein family HMM TIGR01079
YP_004047438.1	identified by match to protein family HMM PF00238; match to protein family HMM TIGR01067
YP_004047439.1	identified by match to protein family HMM PF00366; match to protein family HMM TIGR03635
YP_004047440.1	identified by match to protein family HMM PF00831; match to protein family HMM TIGR00012
YP_004047441.1	identified by match to protein family HMM PF00252; match to protein family HMM TIGR01164
YP_004047442.1	identified by match to protein family HMM PF00189; match to protein family HMM PF00417; match to protein family HMM PF07650; match to protein family HMM TIGR01009
YP_004047443.1	identified by match to protein family HMM PF00237; match to protein family HMM TIGR01044
YP_004047444.1	identified by match to protein family HMM PF00203; match to protein family HMM TIGR01050
YP_004047445.1	identified by match to protein family HMM PF00181; match to protein family HMM PF03947; match to protein family HMM TIGR01171
YP_004047446.1	identified by match to protein family HMM PF00276
YP_004047447.1	identified by match to protein family HMM PF00573; match to protein family HMM TIGR03953
YP_004047448.1	identified by match to protein family HMM PF00297; match to protein family HMM TIGR03625
YP_004047449.1	identified by match to protein family HMM PF00338; match to protein family HMM TIGR01049
YP_004047450.1	identified by match to protein family HMM PF02733; match to protein family HMM TIGR02363
YP_004047451.1	identified by match to protein family HMM PF00128
YP_004047452.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378
YP_004047456.1	identified by glimmer; putative
YP_004047457.1	identified by glimmer; putative
YP_004047459.1	This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.
YP_004047460.1	This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM TIGR02167
YP_004047462.1	identified by match to protein family HMM PF00763; match to protein family HMM PF02882
YP_004047463.1	identified by match to protein family HMM PF02386
YP_004047464.1	identified by match to protein family HMM PF02080; match to protein family HMM PF02254
YP_004047465.1	identified by match to protein family HMM PF01162; match to protein family HMM PF02637; match to protein family HMM PF02934; match to protein family HMM TIGR00133
YP_004047466.1	identified by match to protein family HMM PF01425
YP_004047467.1	identified by match to protein family HMM PF02686; match to protein family HMM TIGR00135
YP_004047468.1	identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03120; match to protein family HMM TIGR00575
YP_004047470.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479
YP_004047471.1	identified by match to protein family HMM PF02517
YP_004047472.1	identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003
YP_004047473.1	identified by match to protein family HMM PF00580
YP_004047474.1	identified by match to protein family HMM PF06271
YP_004047476.1	This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM TIGR02167; overlaps another CDS with the same product name
YP_004047477.1	This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; overlaps another CDS with the same product name
YP_004047478.1	This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM TIGR02167; overlaps another CDS with the same product name
YP_004047480.1	identified by match to protein family HMM PF01625; match to protein family HMM PF01641; match to protein family HMM TIGR00357; match to protein family HMM TIGR00401
YP_004047484.1	identified by match to protein family HMM PF03235; match to protein family HMM PF07510
YP_004047490.1	identified by match to protein family HMM PF00528
YP_004047491.1	identified by match to protein family HMM PF00005
YP_004047493.1	identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_004047494.1	identified by match to protein family HMM PF00155
YP_004047495.1	identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004
YP_004047496.1	This ORF has 2 membrane spanning regions. This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM PF03382; match to protein family HMM TIGR02167
YP_004047497.1	This ORF has 1 membrane spanning region, C-terminal. This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM TIGR02167
YP_004047500.1	identified by match to protein family HMM PF01182; match to protein family HMM TIGR00502
YP_004047501.1	identified by match to protein family HMM PF00121; match to protein family HMM TIGR00419
YP_004047502.1	identified by match to protein family HMM PF08282; match to protein family HMM TIGR01484
YP_004047503.1	identified by match to protein family HMM PF01676; match to protein family HMM PF06415; match to protein family HMM TIGR01307
YP_004047505.1	identified by match to protein family HMM PF08843
YP_004047506.1	identified by match to protein family HMM PF01791; match to protein family HMM TIGR00126
YP_004047507.1	identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879
YP_004047508.1	identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM PF07831; match to protein family HMM TIGR02644
YP_004047510.1	identified by match to protein family HMM PF00571; match to protein family HMM PF03448; match to protein family HMM TIGR00400
YP_004047511.1	identified by match to protein family HMM PF02390; match to protein family HMM TIGR00091
YP_004047513.1	This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM PF03382; match to protein family HMM TIGR02167
YP_004047514.1	identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675
YP_004047516.1	identified by match to protein family HMM PF02661
YP_004047520.1	identified by match to protein family HMM PF00005
YP_004047523.1	identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010
YP_004047524.1	Tandem dinucleotide repeats of TA occur 5' of the ORF in a promoter region; this tract is possibly subject to indels governing phase variable expression of the gene.
YP_004047526.1	Tandem dinucleotide repeats of TA occur 5' of the ORF in a promoter region; this tract is possibly subject to indels governing phase variable expression of the gene.
YP_004047527.1	This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM TIGR02167
YP_004047529.1	identified by match to protein family HMM PF06144
YP_004047530.1	identified by match to protein family HMM PF00271; match to protein family HMM PF02151; match to protein family HMM TIGR00631
YP_004047531.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630
YP_004047532.1	identified by match to protein family HMM PF08245; match to protein family HMM TIGR01499
YP_004047534.1	identified by match to protein family HMM PF02603; match to protein family HMM PF07475
YP_004047535.1	identified by match to protein family HMM PF01790
YP_004047536.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; match to protein family HMM TIGR01292
YP_004047537.1	identified by match to protein family HMM PF01790
YP_004047538.1	identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647
YP_004047539.1	This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM PF03382; match to protein family HMM TIGR02167
YP_004047540.1	identified by match to protein family HMM PF00367
YP_004047546.1	identified by match to protein family HMM PF02378
YP_004047547.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378
YP_004047551.1	identified by match to protein family HMM PF01380
YP_004047552.1	identified by match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751
YP_004047556.1	This ORF may correspond to the C-terminal region of lipoprotein MSB_A0839, truncated by an authentic frameshift mutation.
YP_004047558.1	identified by match to protein family HMM PF00005
YP_004047560.1	overlaps another CDS with the same product name
YP_004047561.1	overlaps another CDS with the same product name
YP_004047566.1	identified by match to protein family HMM PF03606
YP_004047567.1	identified by match to protein family HMM PF01863
YP_004047568.1	identified by match to protein family HMM PF01926; match to protein family HMM PF06071; match to protein family HMM TIGR00092
YP_004047569.1	identified by match to protein family HMM PF06107
YP_004047570.1	identified by match to protein family HMM PF02527; match to protein family HMM PF05175; match to protein family HMM TIGR00138
YP_004047571.1	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560
YP_004047572.1	identified by match to protein family HMM PF00324
YP_004047574.1	identified by match to protein family HMM PF00324
YP_004047575.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494
YP_004047576.1	identified by match to protein family HMM PF00216
YP_004047577.1	identified by match to protein family HMM PF07672; match to protein family HMM PF07690
YP_004047580.1	identified by match to protein family HMM PF03590; match to protein family HMM TIGR00669
YP_004047581.1	identified by match to protein family HMM PF01649; match to protein family HMM TIGR00029
YP_004047582.1	identified by match to protein family HMM PF01926; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR00450
YP_004047584.1	identified by match to protein family HMM PF00814; match to protein family HMM TIGR00329; match to protein family HMM TIGR03723
YP_004047586.1	identified by match to protein family HMM PF08282; match to protein family HMM TIGR00099
YP_004047587.1	identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00457
YP_004047589.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR02315
YP_004047590.1	identified by match to protein family HMM PF00528
YP_004047593.1	identified by match to protein family HMM PF08282; match to protein family HMM TIGR01484
YP_004047594.1	identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068
YP_004047595.1	identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499
YP_004047596.1	identified by match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737
YP_004047597.1	identified by match to protein family HMM PF08921
YP_004047598.1	identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414
YP_004047600.1	identified by match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518
YP_004047603.1	identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571
YP_004047606.1	identified by match to protein family HMM PF00578; match to protein family HMM PF08534
YP_004047609.1	identified by match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR01427
YP_004047610.1	identified by match to protein family HMM PF01074
YP_004047611.1	identified by match to protein family HMM PF00359; match to protein family HMM TIGR00848
YP_004047612.1	identified by match to protein family HMM PF00480
YP_004047613.1	identified by match to protein family HMM PF00232
YP_004047614.1	identified by match to protein family HMM PF05913
YP_004047615.1	identified by glimmer; putative
YP_004047616.1	identified by glimmer; putative
YP_004047617.1	identified by match to protein family HMM PF00561
YP_004047619.1	identified by match to protein family HMM PF01048
YP_004047621.1	identified by match to protein family HMM PF00455; match to protein family HMM PF08220
YP_004047622.1	identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168; match to protein family HMM TIGR03828
YP_004047623.1	identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427
YP_004047627.1	identified by match to protein family HMM PF01134; match to protein family HMM TIGR00136
YP_004047628.1	identified by match to protein family HMM PF00375
YP_004047629.1	identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992
YP_004047630.1	identified by match to protein family HMM PF00857
YP_004047631.1	This ORF contains tandem Palindromic Amphipathic Repeat Coding ELements.; identified by match to protein family HMM PF03382; match to protein family HMM TIGR02167
YP_004047633.1	identified by glimmer; putative
YP_004047634.1	identified by glimmer; putative
YP_004047637.1	Tandem dinucleotide repeats of TA occur 5' of the ORF in a promoter region; this tract is possibly subject to indels governing phase variable expression of the gene.
YP_004047638.1	Tandem dinucleotide repeats of TA occur 5' of the ORF in a promoter region; this tract is possibly subject to indels governing phase variable expression of the gene.
YP_004047639.1	identified by match to protein family HMM PF01633; match to protein family HMM PF01636
YP_004047640.1	identified by match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_004047641.1	identified by match to protein family HMM PF02096; match to protein family HMM TIGR03592
YP_004047642.1	identified by match to protein family HMM PF00825; match to protein family HMM TIGR00188
YP_004047643.1	identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030