-- dump date   	20120504_153833
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_003081237.1	identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180
YP_003081239.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_003081241.1	identified by match to protein family HMM PF01547
YP_003081242.1	identified by match to protein family HMM PF03652
YP_003081243.1	identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537
YP_003081245.1	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560
YP_003081246.1	identified by match to protein family HMM PF00499
YP_003081247.1	identified by match to protein family HMM PF00420
YP_003081249.1	identified by match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974
YP_003081250.1	identified by match to protein family HMM PF00023
YP_003081251.1	identified by match to protein family HMM PF01702; match to protein family HMM TIGR00430; match to protein family HMM TIGR00449
YP_003081253.1	identified by match to protein family HMM PF00012; match to protein family HMM TIGR02350
YP_003081254.1	identified by match to protein family HMM PF01416; match to protein family HMM TIGR00071
YP_003081258.1	identified by match to protein family HMM PF00023
YP_003081263.1	identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697
YP_003081265.1	identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00878
YP_003081266.1	identified by match to protein family HMM PF00420
YP_003081268.1	identified by match to protein family HMM PF04039
YP_003081271.1	identified by match to protein family HMM PF04452; match to protein family HMM TIGR00046
YP_003081274.1	identified by match to protein family HMM PF01467; match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083
YP_003081276.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01842
YP_003081278.1	identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683
YP_003081281.1	identified by match to protein family HMM PF01127; match to protein family HMM TIGR02970
YP_003081283.1	identified by match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456
YP_003081284.1	identified by match to protein family HMM PF01027
YP_003081287.1	Catalyzes the transfer of electrons from NADH to quinone
YP_003081288.1	identified by match to protein family HMM PF00146
YP_003081289.1	identified by match to protein family HMM PF04972
YP_003081290.1	class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle
YP_003081292.1	identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726
YP_003081294.1	identified by match to protein family HMM PF00312; match to protein family HMM TIGR00952
YP_003081295.1	identified by match to protein family HMM PF00206; match to protein family HMM TIGR00928
YP_003081296.1	identified by match to protein family HMM PF01281; match to protein family HMM PF03948; match to protein family HMM TIGR00158
YP_003081297.1	identified by match to protein family HMM PF01084; match to protein family HMM TIGR00165
YP_003081298.1	identified by match to protein family HMM PF01250; match to protein family HMM TIGR00166
YP_003081300.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710
YP_003081301.1	identified by match to protein family HMM PF00892
YP_003081303.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_003081304.1	identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368
YP_003081318.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_003081319.1	identified by match to protein family HMM PF00383
YP_003081326.1	identified by match to protein family HMM PF00551; match to protein family HMM TIGR00460
YP_003081328.1	identified by match to protein family HMM PF02540; match to protein family HMM TIGR00552
YP_003081330.1	identified by match to protein family HMM PF03099
YP_003081332.1	identified by match to protein family HMM PF01509; match to protein family HMM TIGR00431
YP_003081355.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03346
YP_003081356.1	identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757
YP_003081358.1	identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078
YP_003081359.1	identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002
YP_003081360.1	identified by match to protein family HMM TIGR02273
YP_003081361.1	identified by match to protein family HMM PF02646
YP_003081363.1	identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945
YP_003081364.1	identified by match to protein family HMM TIGR00536
YP_003081367.1	identified by match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM TIGR00962
YP_003081368.1	identified by match to protein family HMM PF00213
YP_003081370.1	identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727
YP_003081371.1	identified by match to protein family HMM PF02542; match to protein family HMM TIGR00151
YP_003081373.1	identified by match to protein family HMM PF02687
YP_003081374.1	identified by match to protein family HMM PF00849
YP_003081376.1	catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate
YP_003081378.1	identified by match to protein family HMM PF00589; match to protein family HMM PF02899
YP_003081380.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005
YP_003081382.1	identified by match to protein family HMM TIGR01730
YP_003081383.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_003081384.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR00857
YP_003081386.1	identified by match to protein family HMM PF01411; match to protein family HMM PF07973; match to protein family HMM TIGR00344
YP_003081387.1	identified by match to protein family HMM PF03600
YP_003081390.1	identified by match to protein family HMM PF01258
YP_003081391.1	flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor
YP_003081392.1	identified by match to protein family HMM PF01145; match to protein family HMM TIGR01933
YP_003081393.1	identified by match to protein family HMM PF01145; match to protein family HMM TIGR01932
YP_003081394.1	identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037
YP_003081395.1	identified by match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594
YP_003081396.1	identified by match to protein family HMM PF01713
YP_003081397.1	identified by match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663
YP_003081398.1	catalyzes the formation of 2-oxoglutarate from isocitrate
YP_003081399.1	identified by match to protein family HMM PF03547
YP_003081400.1	identified by match to protein family HMM PF00675; match to protein family HMM PF05193
YP_003081401.1	heat shock protein involved in degradation of misfolded proteins
YP_003081402.1	heat shock protein involved in degradation of misfolded proteins
YP_003081403.1	identified by match to protein family HMM PF01128
YP_003081404.1	identified by match to protein family HMM PF01180; match to protein family HMM TIGR01036
YP_003081405.1	identified by match to protein family HMM PF00275
YP_003081408.1	identified by match to protein family HMM PF04066
YP_003081410.1	identified by match to protein family HMM PF01808; match to protein family HMM PF02142; match to protein family HMM TIGR00355
YP_003081411.1	identified by match to protein family HMM PF02951; match to protein family HMM PF02955; match to protein family HMM PF08443
YP_003081413.1	identified by match to protein family HMM PF03060
YP_003081415.1	identified by match to protein family HMM PF01594
YP_003081416.1	identified by match to protein family HMM PF00873
YP_003081417.1	identified by match to protein family HMM PF00156; match to protein family HMM PF00310; match to protein family HMM TIGR01134
YP_003081419.1	identified by match to protein family HMM PF01132; match to protein family HMM PF08207; match to protein family HMM PF09285
YP_003081423.1	identified by match to protein family HMM PF02463
YP_003081424.1	identified by match to protein family HMM PF01170; match to protein family HMM PF03602
YP_003081425.1	identified by match to protein family HMM PF01722
YP_003081426.1	identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365
YP_003081427.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138
YP_003081429.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00595
YP_003081431.1	identified by match to protein family HMM PF06055
YP_003081432.1	identified by match to protein family HMM PF03524
YP_003081434.1	identified by match to protein family HMM PF01025
YP_003081435.1	identified by match to protein family HMM PF00579; match to protein family HMM TIGR00233
YP_003081437.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_003081438.1	identified by match to protein family HMM PF01409; match to protein family HMM TIGR00468
YP_003081439.1	identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120
YP_003081440.1	identified by match to protein family HMM PF00464; match to protein family HMM PF01212
YP_003081442.1	identified by match to protein family HMM PF02581
YP_003081443.1	identified by match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369
YP_003081445.1	identified by match to protein family HMM PF01523
YP_003081446.1	identified by match to protein family HMM PF00709
YP_003081448.1	identified by match to protein family HMM PF00085
YP_003081449.1	identified by match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF07479
YP_003081450.1	identified by match to protein family HMM PF04002
YP_003081452.1	identified by match to protein family HMM PF01381
YP_003081453.1	identified by match to protein family HMM PF00271; match to protein family HMM PF01043; match to protein family HMM PF07516; match to protein family HMM PF07517; match to protein family HMM TIGR00963
YP_003081455.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_003081456.1	identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162
YP_003081457.1	identified by match to protein family HMM PF00814; match to protein family HMM TIGR00329
YP_003081458.1	identified by match to protein family HMM TIGR02122
YP_003081460.1	identified by match to protein family HMM PF00348
YP_003081462.1	identified by match to protein family HMM PF01925
YP_003081465.1	identified by match to protein family HMM PF08245
YP_003081466.1	identified by match to protein family HMM PF00730; match to protein family HMM TIGR01083
YP_003081467.1	identified by match to protein family HMM PF01066
YP_003081468.1	identified by match to protein family HMM PF02666
YP_003081469.1	identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043
YP_003081470.1	identified by match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019
YP_003081471.1	identified by match to protein family HMM PF00549; match to protein family HMM PF08442; match to protein family HMM TIGR01016
YP_003081472.1	identified by match to protein family HMM PF02769; match to protein family HMM TIGR01379
YP_003081473.1	identified by match to protein family HMM PF00121; match to protein family HMM TIGR00419
YP_003081474.1	identified by match to protein family HMM PF00581
YP_003081475.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_003081476.1	identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023
YP_003081477.1	involved in the insertion of copper into subunit I of cytochrome C oxidase
YP_003081478.1	identified by match to protein family HMM PF00308; match to protein family HMM PF08299; match to protein family HMM TIGR00362
YP_003081479.1	identified by match to protein family HMM PF01118; match to protein family HMM PF02774
YP_003081481.1	identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186
YP_003081482.1	identified by match to protein family HMM PF00338; match to protein family HMM TIGR01049
YP_003081483.1	identified by match to protein family HMM PF00297
YP_003081484.1	identified by match to protein family HMM PF00573
YP_003081486.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_003081487.1	identified by match to protein family HMM PF00203
YP_003081488.1	identified by match to protein family HMM PF00237; match to protein family HMM TIGR01044
YP_003081489.1	identified by match to protein family HMM PF00189; match to protein family HMM PF00417; match to protein family HMM PF07650; match to protein family HMM TIGR01009
YP_003081490.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_003081492.1	identified by match to protein family HMM PF00366
YP_003081493.1	identified by match to protein family HMM PF00238; match to protein family HMM TIGR01067
YP_003081494.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_003081495.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_003081496.1	identified by match to protein family HMM PF00253
YP_003081497.1	identified by match to protein family HMM PF00410
YP_003081498.1	identified by match to protein family HMM PF00347
YP_003081500.1	identified by match to protein family HMM PF00333; match to protein family HMM PF03719; match to protein family HMM TIGR01021
YP_003081501.1	identified by match to protein family HMM PF01305
YP_003081502.1	identified by match to protein family HMM PF00344; match to protein family HMM TIGR00967
YP_003081503.1	identified by match to protein family HMM PF00406
YP_003081504.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_003081505.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_003081506.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_003081507.1	identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059
YP_003081508.1	identified by match to protein family HMM PF00376
YP_003081509.1	identified by match to protein family HMM PF04608
YP_003081510.1	identified by match to protein family HMM PF00707; match to protein family HMM PF05198
YP_003081511.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_003081513.1	identified by match to protein family HMM PF00111
YP_003081514.1	identified by match to protein family HMM PF00012
YP_003081515.1	identified by match to protein family HMM PF07743
YP_003081517.1	identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049
YP_003081518.1	identified by match to protein family HMM PF01592; match to protein family HMM TIGR01999
YP_003081519.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01212
YP_003081520.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM PF02082; match to protein family HMM TIGR00738
YP_003081522.1	identified by match to protein family HMM PF01386; match to protein family HMM TIGR00731
YP_003081523.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_003081524.1	identified by match to protein family HMM PF08886; match to protein family HMM TIGR02049
YP_003081526.1	identified by match to protein family HMM PF01121; match to protein family HMM TIGR00152
YP_003081527.1	identified by match to protein family HMM PF01513
YP_003081530.1	identified by match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM TIGR02937
YP_003081531.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724
YP_003081533.1	identified by match to protein family HMM PF00005
YP_003081535.1	identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360
YP_003081536.1	identified by match to protein family HMM PF01571; match to protein family HMM TIGR03317
YP_003081539.1	involved in the de novo synthesis of pyridoxine (Vitamin B6)
YP_003081540.1	identified by match to protein family HMM PF00830
YP_003081541.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_003081542.1	identified by match to protein family HMM PF03364
YP_003081543.1	identified by match to protein family HMM PF03618
YP_003081544.1	identified by match to protein family HMM PF00571
YP_003081547.1	identified by match to protein family HMM PF00037
YP_003081550.1	identified by match to protein family HMM PF01406; match to protein family HMM PF09190; match to protein family HMM PF09334; match to protein family HMM TIGR00435
YP_003081552.1	identified by match to protein family HMM PF00488; match to protein family HMM PF01624; match to protein family HMM PF05188; match to protein family HMM PF05190; match to protein family HMM PF05192; match to protein family HMM TIGR01070
YP_003081553.1	identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163
YP_003081554.1	identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500
YP_003081555.1	identified by match to protein family HMM PF03232
YP_003081557.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937
YP_003081558.1	identified by match to protein family HMM PF00091; match to protein family HMM PF03953; match to protein family HMM TIGR00065
YP_003081559.1	identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741
YP_003081560.1	identified by match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234
YP_003081561.1	identified by match to protein family HMM PF00210; match to protein family HMM TIGR00754
YP_003081562.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763
YP_003081563.1	identified by match to protein family HMM PF02581
YP_003081564.1	identified by match to protein family HMM PF03653; match to protein family HMM TIGR00701
YP_003081565.1	identified by match to protein family HMM PF00120; match to protein family HMM PF03951
YP_003081566.1	identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244
YP_003081567.1	Contains a frameshift based on matches to NSE_0356 (helicase, UvrD/Rep family), if combined with NRI_0344 (ORF00332) Identified by match to protein family HMM PF00580.
YP_003081568.1	Contains a frameshift based on matches to NSE_0356 (helicase, UvrD/Rep family), if combined with NRI_0343 (ORF00331)
YP_003081569.1	identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010
YP_003081571.1	identified by match to protein family HMM PF02556; match to protein family HMM TIGR00809
YP_003081572.1	identified by match to protein family HMM PF04280
YP_003081573.1	identified by match to protein family HMM PF00398; match to protein family HMM TIGR00755
YP_003081575.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518
YP_003081576.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_003081578.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_003081579.1	identified by match to protein family HMM PF01243
YP_003081581.1	identified by match to protein family HMM PF01207; match to protein family HMM TIGR00737
YP_003081582.1	identified by match to protein family HMM PF01975; match to protein family HMM TIGR00087
YP_003081583.1	identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM TIGR01812
YP_003081584.1	identified by match to protein family HMM PF02910
YP_003081586.1	identified by match to protein family HMM PF08240
YP_003081588.1	identified by match to protein family HMM PF04800
YP_003081589.1	identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988
YP_003081590.1	identified by match to protein family HMM PF01379; match to protein family HMM PF03900; match to protein family HMM TIGR00212
YP_003081591.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993
YP_003081593.1	identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732
YP_003081596.1	identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079
YP_003081597.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_003081598.1	identified by match to protein family HMM PF03631
YP_003081599.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_003081600.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0
YP_003081601.1	identified by match to protein family HMM PF02326
YP_003081604.1	identified by match to protein family HMM PF00885; match to protein family HMM TIGR00114
YP_003081605.1	identified by match to protein family HMM PF02096
YP_003081606.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_003081607.1	identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00019
YP_003081608.1	identified by match to protein family HMM PF01553
YP_003081609.1	identified by match to protein family HMM PF00575
YP_003081610.1	identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706
YP_003081611.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_003081612.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_003081614.1	identified by match to protein family HMM PF01230
YP_003081615.1	identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633
YP_003081617.1	identified by match to protein family HMM PF00156
YP_003081618.1	identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00966
YP_003081620.1	NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate
YP_003081621.1	Contains a frameshift based on matches to NSE_0420, if combined with NRI_0399 (ORF00384)
YP_003081623.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241
YP_003081624.1	identified by match to protein family HMM PF01588; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472
YP_003081625.1	identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174
YP_003081627.1	identified by match to protein family HMM PF00507
YP_003081628.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_003081629.1	identified by match to protein family HMM PF00329; match to protein family HMM TIGR01961
YP_003081630.1	identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534
YP_003081631.1	identified by match to protein family HMM PF00162
YP_003081632.1	identified by match to protein family HMM PF02401; match to protein family HMM TIGR00216
YP_003081637.1	identified by match to protein family HMM PF00563
YP_003081638.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_003081640.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_003081642.1	identified by match to protein family HMM PF00106
YP_003081643.1	identified by match to protein family HMM PF00589; match to protein family HMM PF02899
YP_003081648.1	identified by match to protein family HMM PF00109; match to protein family HMM PF02801; match to protein family HMM TIGR03150
YP_003081649.1	catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis
YP_003081650.1	identified by match to protein family HMM TIGR02281
YP_003081653.1	identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR01353
YP_003081654.1	identified by match to protein family HMM TIGR00613
YP_003081656.1	identified by match to protein family HMM PF07031
YP_003081658.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01350
YP_003081660.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01769
YP_003081661.1	identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554
YP_003081662.1	identified by match to protein family HMM PF00580
YP_003081663.1	identified by match to protein family HMM PF03054; match to protein family HMM PF06508; match to protein family HMM TIGR00420
YP_003081665.1	identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01406
YP_003081666.1	identified by match to protein family HMM PF00557; match to protein family HMM PF01321
YP_003081668.1	identified by match to protein family HMM PF00034
YP_003081669.1	identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639
YP_003081670.1	identified by match to protein family HMM PF00883; match to protein family HMM PF02789.
YP_003081671.1	identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM PF02938; match to protein family HMM TIGR00459
YP_003081672.1	identified by match to protein family HMM PF08245
YP_003081673.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974
YP_003081674.1	identified by match to protein family HMM PF00005
YP_003081675.1	identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411
YP_003081677.1	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate
YP_003081678.1	identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496
YP_003081679.1	identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498
YP_003081680.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_003081683.1	identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103
YP_003081684.1	identified by match to protein family HMM PF00004; match to protein family HMM TIGR02397
YP_003081685.1	identified by match to protein family HMM PF03070
YP_003081686.1	molecular chaperone
YP_003081688.1	identified by match to protein family HMM PF00023
YP_003081689.1	identified by match to protein family HMM PF00795; match to protein family HMM TIGR00546
YP_003081691.1	identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326
YP_003081692.1	identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575
YP_003081694.1	identified by match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368
YP_003081695.1	identified by match to protein family HMM TIGR00105
YP_003081697.1	identified by match to protein family HMM PF06242
YP_003081698.1	identified by match to protein family HMM PF00133; match to protein family HMM PF09334; match to protein family HMM TIGR00396
YP_003081700.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07022
YP_003081701.1	identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191
YP_003081702.1	identified by match to protein family HMM PF00185; match to protein family HMM PF02729
YP_003081704.1	involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP
YP_003081706.1	identified by match to protein family HMM PF05088
YP_003081712.1	identified by match to protein family HMM PF00749
YP_003081714.1	B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE
YP_003081715.1	identified by match to protein family HMM PF00013; match to protein family HMM PF08529; match to protein family HMM TIGR01953; match to protein family HMM TIGR01954
YP_003081716.1	identified by match to protein family HMM PF00009; match to protein family HMM PF01926; match to protein family HMM PF03144; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR00487
YP_003081721.1	identified by match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01302
YP_003081723.1	identified by match to protein family HMM PF02470
YP_003081725.1	identified by match to protein family HMM PF01612
YP_003081726.1	identified by match to protein family HMM PF00154; match to protein family HMM TIGR02012
YP_003081727.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_003081729.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase
YP_003081730.1	identified by match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; match to protein family HMM TIGR02349
YP_003081731.1	identified by match to protein family HMM PF01926; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR00650
YP_003081732.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin)
YP_003081733.1	identified by match to protein family HMM PF00156; match to protein family HMM TIGR01367
YP_003081735.1	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959
YP_003081737.1	identified by match to protein family HMM PF06271
YP_003081738.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_003081739.1	identified by match to protein family HMM PF03060
YP_003081740.1	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064
YP_003081741.1	identified by match to protein family HMM PF01728
YP_003081742.1	identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041
YP_003081743.1	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01347
YP_003081744.1	identified by match to protein family HMM PF01523
YP_003081745.1	identified by match to protein family HMM PF02630
YP_003081746.1	identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665. Overlaps with tRNA-Pro-1 gene (NRI_0528)
YP_003081747.1	identified by match to protein family HMM PF04586; match to protein family HMM TIGR01543
YP_003081748.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005
YP_003081749.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292
YP_003081750.1	identified by match to protein family HMM PF00578; match to protein family HMM PF08534
YP_003081751.1	identified by match to protein family HMM PF00334
YP_003081752.1	identified by match to protein family HMM PF03023
YP_003081753.1	identified by match to protein family HMM PF00361
YP_003081756.1	Catalyzes the transfer of electrons from NADH to quinone
YP_003081760.1	identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414
YP_003081761.1	identified by match to protein family HMM PF01715
YP_003081764.1	identified by match to protein family HMM PF01578
YP_003081766.1	identified by match to protein family HMM PF01330
YP_003081767.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_003081769.1	SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide
YP_003081770.1	identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057
YP_003081772.1	identified by match to protein family HMM PF04384
YP_003081774.1	identified by match to protein family HMM PF01479; match to protein family HMM TIGR01017
YP_003081775.1	identified by match to protein family HMM PF08478
YP_003081777.1	identified by match to protein family HMM PF01227
YP_003081778.1	identified by match to protein family HMM PF00231
YP_003081780.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02873
YP_003081783.1	type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese
YP_003081785.1	identified by match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01051
YP_003081787.1	identified by match to protein family HMM PF01596
YP_003081788.1	identified by match to protein family HMM PF00330; match to protein family HMM PF00694; match to protein family HMM TIGR01341
YP_003081789.1	identified by match to protein family HMM PF02636
YP_003081790.1	identified by match to protein family HMM PF00133; match to protein family HMM PF08264; match to protein family HMM PF09334
YP_003081791.1	identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020
YP_003081796.1	identified by match to protein family HMM PF01119; match to protein family HMM PF02518; match to protein family HMM PF08676; match to protein family HMM TIGR00585
YP_003081798.1	identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433
YP_003081800.1	identified by match to protein family HMM PF00155
YP_003081802.1	identified by match to protein family HMM PF08241; match to protein family HMM TIGR02072
YP_003081803.1	identified by match to protein family HMM TIGR00347
YP_003081804.1	identified by match to protein family HMM PF00202; match to protein family HMM TIGR00508
YP_003081806.1	identified by match to protein family HMM PF00116; match to protein family HMM PF02790; match to protein family HMM TIGR02866
YP_003081807.1	identified by match to protein family HMM PF00115; match to protein family HMM TIGR02891
YP_003081808.1	converts protoheme IX and farnesyl diphosphate to heme O
YP_003081809.1	identified by match to protein family HMM PF00355; match to protein family HMM TIGR01409; match to protein family HMM TIGR01416
YP_003081810.1	identified by match to protein family HMM PF00032; match to protein family HMM PF00033
YP_003081811.1	identified by match to protein family HMM PF02167
YP_003081812.1	identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR01129
YP_003081813.1	Involved in ubiquinone biosynthesis
YP_003081816.1	identified by match to protein family HMM PF08541; match to protein family HMM PF08545; match to protein family HMM TIGR00747
YP_003081817.1	identified by match to protein family HMM PF02504; match to protein family HMM TIGR00182
YP_003081818.1	identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031
YP_003081820.1	Catalyzes the transfer of electrons from NADH to quinone
YP_003081821.1	identified by match to protein family HMM PF03109
YP_003081825.1	identified by match to protein family HMM PF00216
YP_003081826.1	identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033
YP_003081827.1	identified by match to protein family HMM PF00118; match to protein family HMM TIGR02348
YP_003081828.1	identified by match to protein family HMM PF00166
YP_003081830.1	Matched to COG0760: Parvulin-like peptidyl-prolyl isomerase; Completely overlapped with NRI_0618
YP_003081832.1	identified by match to protein family HMM PF01743
YP_003081835.1	identified by match to protein family HMM PF00926; match to protein family HMM TIGR00506
YP_003081839.1	identified by match to protein family HMM PF01580
YP_003081848.1	identified by match to protein family HMM PF00583
YP_003081851.1	identified by match to protein family HMM PF00970
YP_003081853.1	identified by match to protein family HMM PF07977
YP_003081854.1	identified by match to protein family HMM PF03938
YP_003081855.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_003081857.1	identified by match to protein family HMM PF00075
YP_003081858.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_003081859.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_003081861.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01350
YP_003081863.1	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR01394
YP_003081864.1	identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593
YP_003081865.1	identified by match to protein family HMM PF00510
YP_003081866.1	identified by match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04998; match to protein family HMM PF05000
YP_003081867.1	identified by match to protein family HMM PF04997
YP_003081868.1	identified by match to protein family HMM PF00562; match to protein family HMM PF04560; match to protein family HMM PF04561; match to protein family HMM PF04563; match to protein family HMM PF04565; match to protein family HMM TIGR02013
YP_003081870.1	identified by match to protein family HMM PF00466
YP_003081871.1	identified by match to protein family HMM PF00687
YP_003081872.1	identified by match to protein family HMM PF03946
YP_003081873.1	identified by match to protein family HMM PF02357
YP_003081875.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_003081876.1	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231; match to protein family HMM TIGR00484
YP_003081877.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_003081878.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_003081879.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851
YP_003081880.1	identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972
YP_003081881.1	identified by match to protein family HMM PF00361
YP_003081882.1	identified by match to protein family HMM TIGR00121
YP_003081883.1	identified by match to protein family HMM PF00348
YP_003081885.1	identified by match to protein family HMM PF00120
YP_003081887.1	identified by match to protein family HMM PF02405
YP_003081888.1	identified by match to protein family HMM PF00005
YP_003081889.1	identified by match to protein family HMM PF00005
YP_003081890.1	identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150
YP_003081891.1	identified by match to protein family HMM PF01351
YP_003081893.1	identified by match to protein family HMM PF00456; match to protein family HMM PF02779
YP_003081894.1	identified by match to protein family HMM PF00361
YP_003081895.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_003081898.1	identified by match to protein family HMM PF03548
YP_003081901.1	identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644
YP_003081903.1	part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase
YP_003081904.1	identified by match to protein family HMM PF08245; match to protein family HMM TIGR01499
YP_003081905.1	identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00450; match to protein family HMM TIGR00650
YP_003081906.1	identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303
YP_003081907.1	identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054
YP_003081908.1	identified by match to protein family HMM PF00288
YP_003081909.1	identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059
YP_003081910.1	identified by match to protein family HMM PF00578; match to protein family HMM PF08534
YP_003081911.1	identified by match to protein family HMM PF00474
YP_003081912.1	identified by match to protein family HMM PF00805
YP_003081913.1	Essential for recycling GMP and indirectly, cGMP
YP_003081916.1	identified by match to protein family HMM PF00285
YP_003081918.1	identified by match to protein family HMM PF00113; match to protein family HMM PF03952; match to protein family HMM TIGR01060
YP_003081919.1	identified by match to protein family HMM PF00719
YP_003081920.1	Contains a frameshift based on matches to NSE_0735 (N-terminal fragment), if combined with NRI_0710 (ORF00685)
YP_003081921.1	Contains a frameshift based on matches to NSE_0735 (C-terminal fragment), if combined with NRI_0709 (ORF00684)
YP_003081922.1	identified by match to protein family HMM PF00749; match to protein family HMM TIGR00464
YP_003081923.1	identified by match to protein family HMM PF02660
YP_003081924.1	identified by match to protein family HMM PF02534
YP_003081925.1	identified by match to protein family HMM PF00437; match to protein family HMM TIGR02788
YP_003081926.1	identified by match to protein family HMM PF03743
YP_003081928.1	identified by match to protein family HMM PF03524; match to protein family HMM TIGR02781
YP_003081929.1	identified by match to protein family HMM PF04335
YP_003081930.1	identified by match to protein family HMM PF00925; match to protein family HMM TIGR00505
YP_003081931.1	catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acyltransferase within the complex. The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2); it contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase
YP_003081934.1	identified by match to protein family HMM PF00254
YP_003081935.1	identified by match to protein family HMM PF00574
YP_003081936.1	binds and unfolds substrates as part of the ClpXP protease
YP_003081938.1	identified by match to protein family HMM PF02092; match to protein family HMM PF05746; match to protein family HMM TIGR00211
YP_003081939.1	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_003081940.1	identified by match to protein family HMM PF00155
YP_003081941.1	identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621
YP_003081942.1	identified by match to protein family HMM PF08511; match to protein family HMM TIGR02396
YP_003081943.1	identified by match to protein family HMM PF00923; match to protein family HMM TIGR00875
YP_003081944.1	identified by match to protein family HMM PF02823
YP_003081945.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_003081952.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_003081953.1	class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine
YP_003081955.1	identified by match to protein family HMM PF00899; match to protein family HMM PF05237
YP_003081956.1	identified by match to protein family HMM PF00070; match to protein family HMM PF03486; match to protein family HMM PF07992
YP_003081957.1	identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442
YP_003081958.1	identified by match to protein family HMM PF01722
YP_003081959.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_003081960.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_003081961.1	identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579
YP_003081966.1	identified by match to protein family HMM PF00762; match to protein family HMM TIGR00109
YP_003081968.1	identified by match to protein family HMM PF01649; match to protein family HMM TIGR00029
YP_003081970.1	identified by match to protein family HMM PF00215; match to protein family HMM TIGR01740
YP_003081971.1	identified by match to protein family HMM PF03741
YP_003081973.1	identified by match to protein family HMM PF01039
YP_003081975.1	identified by match to protein family HMM PF02321
YP_003081976.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_003081978.1	identified by match to protein family HMM PF00676; match to protein family HMM TIGR03182
YP_003081981.1	identified by match to protein family HMM PF01040
YP_003081982.1	identified by match to protein family HMM PF01613
YP_003081983.1	identified by match to protein family HMM PF00005
YP_003081985.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_003081986.1	identified by match to protein family HMM PF00586; match to protein family HMM PF02769
YP_003081989.1	identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443
YP_003081990.1	identified by match to protein family HMM PF00156; match to protein family HMM TIGR01251
YP_003081992.1	identified by match to protein family HMM PF01106; match to protein family HMM PF08712
YP_003081993.1	identified by match to protein family HMM PF00226
YP_003081994.1	Catalyzes the transfer of electrons from NADH to quinone
YP_003081997.1	identified by match to protein family HMM PF02882
YP_003082001.1	identified by match to protein family HMM PF00149
YP_003082003.1	catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine
YP_003082004.1	identified by match to protein family HMM TIGR00030
YP_003082005.1	identified by match to protein family HMM PF03100
YP_003082006.1	identified by match to protein family HMM PF00753; match to protein family HMM PF07521
YP_003082007.1	identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01574
YP_003082010.1	identified by match to protein family HMM PF00875; match to protein family HMM PF03441
YP_003082012.1	identified by match to protein family HMM PF00380
YP_003082013.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_003082014.1	identified by match to protein family HMM PF02674
YP_003082015.1	identified by match to protein family HMM PF06808; match to protein family HMM TIGR02123
YP_003082016.1	identified by match to protein family HMM PF00081; match to protein family HMM PF02777
YP_003082018.1	identified by match to protein family HMM PF05525
YP_003082019.1	identified by match to protein family HMM PF07690
YP_003082020.1	identified by match to protein family HMM PF00924
YP_003082021.1	identified by match to protein family HMM PF00596
YP_003082023.1	DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine
YP_003082024.1	identified by match to protein family HMM PF00160
YP_003082025.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_003082026.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_003082027.1	identified by match to protein family HMM PF01790; match to protein family HMM TIGR00544
YP_003082028.1	identified by match to protein family HMM PF02628
YP_003082031.1	identified by match to protein family HMM PF04610
YP_003082032.1	identified by match to protein family HMM PF04610
YP_003082033.1	identified by match to protein family HMM PF04610
YP_003082034.1	identified by match to protein family HMM PF04610
YP_003082035.1	identified by match to protein family HMM PF03135; match to protein family HMM TIGR00929
YP_003082036.1	identified by match to protein family HMM PF05101
YP_003082037.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_003082038.1	identified by match to protein family HMM PF01734
YP_003082041.1	identified by match to protein family HMM PF00561
YP_003082045.1	identified by match to protein family HMM PF01617
YP_003082046.1	identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810
YP_003082047.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_003082051.1	identified by match to protein family HMM PF02545
YP_003082052.1	identified by match to protein family HMM PF01176; match to protein family HMM TIGR00008
YP_003082056.1	identified by match to protein family HMM PF00999; match to protein family HMM PF02254; match to protein family HMM TIGR00932
YP_003082057.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_003082058.1	identified by match to protein family HMM PF01656
YP_003082061.1	catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
YP_003082063.1	identified by match to protein family HMM PF09334; match to protein family HMM TIGR00398
YP_003082064.1	identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068
YP_003082065.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_003082066.1	identified by match to protein family HMM PF01746; match to protein family HMM TIGR00088
YP_003082067.1	involved in the peptidyltransferase reaction during translation
YP_003082068.1	identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061
YP_003082069.1	identified by match to protein family HMM PF01751; match to protein family HMM PF02132; match to protein family HMM TIGR00615
YP_003082071.1	identified by match to protein family HMM PF01323
YP_003082076.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_003082079.1	identified by match to protein family HMM PF05193
YP_003082080.1	identified by match to protein family HMM PF00675; match to protein family HMM PF05193
YP_003082081.1	identified by match to protein family HMM PF01252; match to protein family HMM TIGR00077
YP_003082082.1	identified by match to protein family HMM PF02074
YP_003082085.1	identified by match to protein family HMM PF00035; match to protein family HMM PF00636; match to protein family HMM TIGR02191
YP_003082087.1	identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006
YP_003082088.1	identified by match to protein family HMM PF02390
YP_003082090.1	identified by match to protein family HMM PF01071; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877
YP_003082093.1	identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674
YP_003082095.1	identified by match to protein family HMM PF01292
YP_003082096.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549
YP_003082097.1	identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758
YP_003082098.1	identified by match to protein family HMM PF04333
YP_003082101.1	identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843
YP_003082102.1	identified by match to protein family HMM PF01761
YP_003082103.1	identified by match to protein family HMM PF03937
YP_003082104.1	identified by match to protein family HMM PF01148
YP_003082105.1	identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055
YP_003082106.1	identified by match to protein family HMM PF01765; match to protein family HMM TIGR00496
YP_003082107.1	identified by match to protein family HMM PF00696; match to protein family HMM TIGR02075
YP_003082108.1	identified by match to protein family HMM PF00627; match to protein family HMM PF00889; match to protein family HMM TIGR00116
YP_003082109.1	identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011
YP_003082111.1	identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR01934
YP_003082112.1	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01349
YP_003082113.1	identified by match to protein family HMM PF08543
YP_003082114.1	identified by match to protein family HMM PF02075
YP_003082115.1	identified by match to protein family HMM PF00056; match to protein family HMM PF02866
YP_003082117.1	identified by match to protein family HMM PF00692; match to protein family HMM TIGR00576
YP_003082119.1	identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063
YP_003082120.1	identified by match to protein family HMM PF01926; match to protein family HMM PF07650; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR00436
YP_003082121.1	identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128
YP_003082122.1	identified by match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM PF08275; match to protein family HMM TIGR01391
YP_003082123.1	identified by match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556
YP_003082125.1	Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis
YP_003082127.1	identified by match to protein family HMM PF02222; match to protein family HMM PF08443; match to protein family HMM TIGR01161
YP_003082129.1	identified by match to protein family HMM PF03237; match to protein family HMM TIGR01630
YP_003082130.1	identified by match to protein family HMM PF01208; match to protein family HMM TIGR01464
YP_003082131.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_003082132.1	identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01510