-- dump date 20120504_153831 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 434131000001 SEQ_END SEQ_END NC_013009.1 879977 879977 DR NC_013009.1; contig end 879977..879977 Neorickettsia risticii str. Illinois YP_003081237.1 CDS parB NC_013009.1 4 774 D identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; chromosome partitioning protein, ParB family 4..774 Neorickettsia risticii str. Illinois 8220065 YP_003081238.1 CDS NRI_0002 NC_013009.1 840 2219 D hypothetical protein 840..2219 Neorickettsia risticii str. Illinois 8220094 YP_003081239.1 CDS pleC NC_013009.1 2242 3585 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase PleC complement(2242..3585) Neorickettsia risticii str. Illinois 8220095 YP_003081240.1 CDS NRI_0004 NC_013009.1 3644 4891 D hypothetical protein 3644..4891 Neorickettsia risticii str. Illinois 8220096 YP_003081241.1 CDS NRI_0005 NC_013009.1 4936 5940 R identified by match to protein family HMM PF01547; iron-binding protein complement(4936..5940) Neorickettsia risticii str. Illinois 8220097 YP_003081242.1 CDS NRI_0006 NC_013009.1 5978 6457 R identified by match to protein family HMM PF03652; hypothetical protein complement(5978..6457) Neorickettsia risticii str. Illinois 8220098 YP_003081243.1 CDS NRI_0007 NC_013009.1 6533 7819 D identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537; phage portal protein, HK97 family 6533..7819 Neorickettsia risticii str. Illinois 8220099 YP_003081244.1 CDS NRI_0008 NC_013009.1 7903 8157 R hypothetical protein complement(7903..8157) Neorickettsia risticii str. Illinois 8220100 YP_003081245.1 CDS pgsA NC_013009.1 8210 8758 R identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(8210..8758) Neorickettsia risticii str. Illinois 8220101 YP_003081246.1 CDS NRI_0010 NC_013009.1 8970 9539 D identified by match to protein family HMM PF00499; NADH dehydrogenase I subunit J 8970..9539 Neorickettsia risticii str. Illinois 8220102 YP_003081247.1 CDS NRI_0011 NC_013009.1 9762 10061 D identified by match to protein family HMM PF00420; NADH dehydrogenase I subunit K 9762..10061 Neorickettsia risticii str. Illinois 8220103 YP_003081248.1 CDS NRI_0012 NC_013009.1 10228 10398 R hypothetical protein complement(10228..10398) Neorickettsia risticii str. Illinois 8220104 YP_003081249.1 CDS NRI_0013 NC_013009.1 10443 12323 D identified by match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974; NADH-quinone oxidoreductase subunit L 10443..12323 Neorickettsia risticii str. Illinois 8220105 YP_003081250.1 CDS NRI_0014 NC_013009.1 12469 13074 D identified by match to protein family HMM PF00023; ankyrin 12469..13074 Neorickettsia risticii str. Illinois 8220106 YP_003081251.1 CDS tgt NC_013009.1 13100 14326 R identified by match to protein family HMM PF01702; match to protein family HMM TIGR00430; match to protein family HMM TIGR00449; queuine tRNA-ribosyltransferase complement(13100..14326) Neorickettsia risticii str. Illinois 8220107 YP_003081252.1 CDS NRI_0016 NC_013009.1 14374 14538 D hypothetical protein 14374..14538 Neorickettsia risticii str. Illinois 8220108 YP_003081253.1 CDS dnaK NC_013009.1 15167 17077 R identified by match to protein family HMM PF00012; match to protein family HMM TIGR02350; chaperone protein DnaK complement(15167..17077) Neorickettsia risticii str. Illinois 8220109 YP_003081254.1 CDS truA NC_013009.1 17284 18015 D identified by match to protein family HMM PF01416; match to protein family HMM TIGR00071; tRNA pseudouridine synthase A 17284..18015 Neorickettsia risticii str. Illinois 8220110 YP_003081255.1 CDS NRI_0019 NC_013009.1 18111 18248 D hypothetical protein 18111..18248 Neorickettsia risticii str. Illinois 8220111 YP_003081256.1 CDS NRI_0020 NC_013009.1 18299 18427 D hypothetical protein 18299..18427 Neorickettsia risticii str. Illinois 8220112 YP_003081257.1 CDS NRI_0021 NC_013009.1 18575 18808 D hypothetical protein 18575..18808 Neorickettsia risticii str. Illinois 8220113 YP_003081258.1 CDS NRI_0022 NC_013009.1 18929 21244 D identified by match to protein family HMM PF00023; hypothetical protein 18929..21244 Neorickettsia risticii str. Illinois 8220114 YP_003081259.1 CDS NRI_0023 NC_013009.1 21564 21854 D hypothetical protein 21564..21854 Neorickettsia risticii str. Illinois 8220115 YP_003081260.1 CDS NRI_0024 NC_013009.1 21863 22321 R hypothetical protein complement(21863..22321) Neorickettsia risticii str. Illinois 8220116 YP_003081261.1 CDS NRI_0025 NC_013009.1 22712 23587 R hypothetical protein complement(22712..23587) Neorickettsia risticii str. Illinois 8220117 YP_003081262.1 CDS NRI_0026 NC_013009.1 24134 24250 D hypothetical protein 24134..24250 Neorickettsia risticii str. Illinois 8220058 YP_003081263.1 CDS NRI_0027 NC_013009.1 24312 24953 R identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697; hypothetical protein complement(24312..24953) Neorickettsia risticii str. Illinois 8220119 YP_003081264.1 CDS NRI_0028 NC_013009.1 24931 25080 R hypothetical protein complement(24931..25080) Neorickettsia risticii str. Illinois 8220120 YP_003081265.1 CDS purM NC_013009.1 25317 26285 R identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00878; phosphoribosylformylglycinamidine cyclo-ligase complement(25317..26285) Neorickettsia risticii str. Illinois 8220121 YP_003081266.1 CDS NRI_0030 NC_013009.1 26485 26820 R identified by match to protein family HMM PF00420; monovalent cation/proton antiporter, MnhC/PhaC subunit family complement(26485..26820) Neorickettsia risticii str. Illinois 8220122 YP_003081267.1 CDS NRI_0031 NC_013009.1 26793 26927 R hypothetical protein complement(26793..26927) Neorickettsia risticii str. Illinois 8220123 YP_003081268.1 CDS NRI_0032 NC_013009.1 27029 27469 R identified by match to protein family HMM PF04039; multisubunit Na+/H+ antiporter, MnhB subunit complement(27029..27469) Neorickettsia risticii str. Illinois 8220124 YP_003081269.1 CDS NRI_0033 NC_013009.1 27459 27995 R multisubunit Na+/H+ antiporter, MnhB subunit complement(27459..27995) Neorickettsia risticii str. Illinois 8220125 YP_003081270.1 CDS NRI_0034 NC_013009.1 28027 28296 R monovalent cation/proton antiporter, MnhG/PhaG subunit complement(28027..28296) Neorickettsia risticii str. Illinois 8220126 YP_003081271.1 CDS NRI_0035 NC_013009.1 28507 29205 R identified by match to protein family HMM PF04452; match to protein family HMM TIGR00046; hypothetical protein complement(28507..29205) Neorickettsia risticii str. Illinois 8220127 YP_003081272.1 CDS nrxR NC_013009.1 29708 30010 D expression regulator NrxR 29708..30010 Neorickettsia risticii str. Illinois 8220128 YP_003081273.1 CDS NRI_0037 NC_013009.1 30149 30448 D DNA-directed RNA polymerase, omega subunit 30149..30448 Neorickettsia risticii str. Illinois 8220129 YP_003081274.1 CDS ribF NC_013009.1 30469 31380 D identified by match to protein family HMM PF01467; match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; riboflavin biosynthesis protein RibF 30469..31380 Neorickettsia risticii str. Illinois 8220130 YP_003081275.1 CDS NRI_0039 NC_013009.1 31563 32414 D hypothetical protein 31563..32414 Neorickettsia risticii str. Illinois 8220131 YP_003081276.1 CDS aprD NC_013009.1 32426 34159 R identified by match to protein family HMM PF00005; match to protein family HMM TIGR01842; type I secretion system ATPase complement(32426..34159) Neorickettsia risticii str. Illinois 8220132 YP_003081277.1 CDS NRI_0041 NC_013009.1 34430 35230 D enoyl-ACP reductase (NADH) 34430..35230 Neorickettsia risticii str. Illinois 8220133 YP_003081278.1 CDS thiS NC_013009.1 35284 35502 R identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683; thiamine biosynthesis protein ThiS complement(35284..35502) Neorickettsia risticii str. Illinois 8220134 YP_003081279.1 CDS NRI_0043 NC_013009.1 35529 36086 R hexapeptide transferase family protein complement(35529..36086) Neorickettsia risticii str. Illinois 8220135 YP_003081280.1 CDS NRI_0044 NC_013009.1 36129 36260 D hypothetical protein 36129..36260 Neorickettsia risticii str. Illinois 8220137 YP_003081281.1 CDS sdhC NC_013009.1 37862 38332 D identified by match to protein family HMM PF01127; match to protein family HMM TIGR02970; succinate dehydrogenase, cytochrome b556 subunit 37862..38332 Neorickettsia risticii str. Illinois 8220055 YP_003081282.1 CDS NRI_0046 NC_013009.1 38521 38658 D succinate dehydrogenase, hydrophobic membrane anchor protein 38521..38658 Neorickettsia risticii str. Illinois 8220138 YP_003081283.1 CDS argS NC_013009.1 38663 40375 D identified by match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456; arginyl-tRNA synthetase 38663..40375 Neorickettsia risticii str. Illinois 8220153 YP_003081284.1 CDS NRI_0048 NC_013009.1 40492 41112 R identified by match to protein family HMM PF01027; membrane protein complement(40492..41112) Neorickettsia risticii str. Illinois 8220139 YP_003081285.1 CDS NRI_0049 NC_013009.1 41358 43973 R hypothetical protein complement(41358..43973) Neorickettsia risticii str. Illinois 8220154 YP_003081286.1 CDS NRI_0050 NC_013009.1 44299 44511 D hypothetical protein 44299..44511 Neorickettsia risticii str. Illinois 8220140 YP_003081287.1 CDS nuoG NC_013009.1 44657 46558 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 44657..46558 Neorickettsia risticii str. Illinois 8220155 YP_003081288.1 CDS nuoH NC_013009.1 46536 47546 D identified by match to protein family HMM PF00146; NADH-quinone oxidoreductase subunit H 46536..47546 Neorickettsia risticii str. Illinois 8220141 YP_003081289.1 CDS NRI_0053 NC_013009.1 47593 48234 D identified by match to protein family HMM PF04972; hypothetical protein 47593..48234 Neorickettsia risticii str. Illinois 8220156 YP_003081290.1 CDS fumC NC_013009.1 48319 49731 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(48319..49731) Neorickettsia risticii str. Illinois 8220142 YP_003081291.1 CDS NRI_0055 NC_013009.1 49803 49985 R hypothetical protein complement(49803..49985) Neorickettsia risticii str. Illinois 8220157 YP_003081292.1 CDS NRI_0056 NC_013009.1 50048 51964 R identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase/polyadenylase complement(50048..51964) Neorickettsia risticii str. Illinois 8220143 YP_003081293.1 CDS NRI_0057 NC_013009.1 51966 52181 D hypothetical protein 51966..52181 Neorickettsia risticii str. Illinois 8220158 YP_003081294.1 CDS rpsO NC_013009.1 52322 52582 R identified by match to protein family HMM PF00312; match to protein family HMM TIGR00952; 30S ribosomal protein S15 complement(52322..52582) Neorickettsia risticii str. Illinois 8220144 YP_003081295.1 CDS purB NC_013009.1 52793 54091 R identified by match to protein family HMM PF00206; match to protein family HMM TIGR00928; adenylosuccinate lyase complement(52793..54091) Neorickettsia risticii str. Illinois 8220159 YP_003081296.1 CDS rplI NC_013009.1 54103 54585 R identified by match to protein family HMM PF01281; match to protein family HMM PF03948; match to protein family HMM TIGR00158; ribosomal protein L9 complement(54103..54585) Neorickettsia risticii str. Illinois 8220145 YP_003081297.1 CDS NRI_0061 NC_013009.1 54598 54852 R identified by match to protein family HMM PF01084; match to protein family HMM TIGR00165; hypothetical protein complement(54598..54852) Neorickettsia risticii str. Illinois 8220160 YP_003081298.1 CDS rpsF NC_013009.1 54864 55208 R identified by match to protein family HMM PF01250; match to protein family HMM TIGR00166; ribosomal protein S6 complement(54864..55208) Neorickettsia risticii str. Illinois 8220146 YP_003081299.1 CDS NRI_0063 NC_013009.1 55414 56433 D ABC-type phosphate transport system, periplasmic component 55414..56433 Neorickettsia risticii str. Illinois 8220161 YP_003081300.1 CDS NRI_0064 NC_013009.1 56460 57635 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710; drug resistance transporter, Bcr/CflA family 56460..57635 Neorickettsia risticii str. Illinois 8220147 YP_003081301.1 CDS NRI_0065 NC_013009.1 57662 58519 R identified by match to protein family HMM PF00892; integral membrane protein DUF6 complement(57662..58519) Neorickettsia risticii str. Illinois 8220162 YP_003081302.1 CDS NRI_0066 NC_013009.1 58866 59534 D lipoprotein 58866..59534 Neorickettsia risticii str. Illinois 8220148 YP_003081303.1 CDS rho NC_013009.1 59637 61040 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(59637..61040) Neorickettsia risticii str. Illinois 8220163 YP_003081304.1 CDS NRI_0068 NC_013009.1 61510 63015 D identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368; Mg chelatase-like protein 61510..63015 Neorickettsia risticii str. Illinois 8220149 YP_003081305.1 CDS NRI_0069 NC_013009.1 63076 63192 D hypothetical protein 63076..63192 Neorickettsia risticii str. Illinois 8220164 YP_003081306.1 CDS NRI_0070 NC_013009.1 63210 63821 D lipoprotein 63210..63821 Neorickettsia risticii str. Illinois 8220150 YP_003081307.1 CDS NRI_0071 NC_013009.1 64492 65151 D hypothetical protein 64492..65151 Neorickettsia risticii str. Illinois 8220165 YP_003081308.1 CDS NRI_0072 NC_013009.1 65567 66217 D hypothetical protein 65567..66217 Neorickettsia risticii str. Illinois 8220151 YP_003081309.1 CDS NRI_0073 NC_013009.1 66542 67600 D hypothetical protein 66542..67600 Neorickettsia risticii str. Illinois 8220166 YP_003081310.1 CDS NRI_0074 NC_013009.1 67675 67824 D hypothetical protein 67675..67824 Neorickettsia risticii str. Illinois 8220152 YP_003081311.1 CDS NRI_0075 NC_013009.1 68080 68223 D hypothetical protein 68080..68223 Neorickettsia risticii str. Illinois 8220167 YP_003081312.1 CDS NRI_0076 NC_013009.1 68306 69124 D hypothetical protein 68306..69124 Neorickettsia risticii str. Illinois 8220168 YP_003081313.1 CDS NRI_0077 NC_013009.1 69885 70700 R hypothetical protein complement(69885..70700) Neorickettsia risticii str. Illinois 8220186 YP_003081314.1 CDS NRI_0078 NC_013009.1 70843 71514 R hypothetical protein complement(70843..71514) Neorickettsia risticii str. Illinois 8220169 YP_003081315.1 CDS NRI_0079 NC_013009.1 72198 72869 R hypothetical protein complement(72198..72869) Neorickettsia risticii str. Illinois 8220187 YP_003081316.1 CDS NRI_0080 NC_013009.1 73333 73530 D hypothetical protein 73333..73530 Neorickettsia risticii str. Illinois 8220170 YP_003081317.1 CDS NRI_0081 NC_013009.1 74096 74863 R hypothetical protein complement(74096..74863) Neorickettsia risticii str. Illinois 8220188 YP_003081318.1 CDS gatB NC_013009.1 75821 77287 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 75821..77287 Neorickettsia risticii str. Illinois 8220171 YP_003081319.1 CDS NRI_0083 NC_013009.1 77295 77714 D identified by match to protein family HMM PF00383; tRNA-specific adenosine deaminase 77295..77714 Neorickettsia risticii str. Illinois 8220189 YP_003081320.1 CDS NRI_0084 NC_013009.1 78221 78853 D hypothetical protein 78221..78853 Neorickettsia risticii str. Illinois 8220172 YP_003081321.1 CDS NRI_0085 NC_013009.1 78932 79075 D hypothetical protein 78932..79075 Neorickettsia risticii str. Illinois 8220190 YP_003081322.1 CDS NRI_0086 NC_013009.1 79188 79814 D hypothetical protein 79188..79814 Neorickettsia risticii str. Illinois 8220173 YP_003081323.1 CDS NRI_0087 NC_013009.1 80416 80964 D hypothetical protein 80416..80964 Neorickettsia risticii str. Illinois 8220191 YP_003081324.1 CDS NRI_0088 NC_013009.1 81084 81629 D hypothetical protein 81084..81629 Neorickettsia risticii str. Illinois 8220174 YP_003081325.1 CDS NRI_0089 NC_013009.1 81864 81980 D hypothetical protein 81864..81980 Neorickettsia risticii str. Illinois 8220192 YP_003081326.1 CDS fmt NC_013009.1 82033 82941 R identified by match to protein family HMM PF00551; match to protein family HMM TIGR00460; methionyl-tRNA formyltransferase complement(82033..82941) Neorickettsia risticii str. Illinois 8220175 YP_003081327.1 CDS NRI_0092 NC_013009.1 83076 83213 R hypothetical protein complement(83076..83213) Neorickettsia risticii str. Illinois 8220074 YP_003081328.1 CDS nadE NC_013009.1 83303 84130 R identified by match to protein family HMM PF02540; match to protein family HMM TIGR00552; NAD+ synthetase complement(83303..84130) Neorickettsia risticii str. Illinois 8220176 YP_003081329.1 CDS NRI_0094 NC_013009.1 84119 84235 D hypothetical protein 84119..84235 Neorickettsia risticii str. Illinois 8220194 YP_003081330.1 CDS NRI_0095 NC_013009.1 84647 85090 D identified by match to protein family HMM PF03099; lipoyltransferase 84647..85090 Neorickettsia risticii str. Illinois 8220177 YP_003081331.1 CDS NRI_0096 NC_013009.1 85122 85277 D lipoyltransferase 85122..85277 Neorickettsia risticii str. Illinois 8220195 YP_003081332.1 CDS truB NC_013009.1 85295 85996 D identified by match to protein family HMM PF01509; match to protein family HMM TIGR00431; tRNA pseudouridine synthase B 85295..85996 Neorickettsia risticii str. Illinois 8220178 YP_003081333.1 CDS NRI_0097 NC_013009.1 85993 86154 R hypothetical protein complement(85993..86154) Neorickettsia risticii str. Illinois 8220179 YP_003081334.1 CDS NRI_0099 NC_013009.1 86388 86579 R hypothetical protein complement(86388..86579) Neorickettsia risticii str. Illinois 8220196 YP_003081335.1 CDS NRI_0100 NC_013009.1 86631 87707 D hypothetical protein 86631..87707 Neorickettsia risticii str. Illinois 8220197 YP_003081336.1 CDS NRI_0101 NC_013009.1 87716 87838 R hypothetical protein complement(87716..87838) Neorickettsia risticii str. Illinois 8220180 YP_003081337.1 CDS NRI_0102 NC_013009.1 87851 88018 D hypothetical protein 87851..88018 Neorickettsia risticii str. Illinois 8220198 YP_003081338.1 CDS NRI_0103 NC_013009.1 88564 89523 D lipoprotein 88564..89523 Neorickettsia risticii str. Illinois 8220181 YP_003081339.1 CDS NRI_0104 NC_013009.1 89952 90860 D hypothetical protein 89952..90860 Neorickettsia risticii str. Illinois 8220199 YP_003081340.1 CDS NRI_0105 NC_013009.1 91010 91942 D hypothetical protein 91010..91942 Neorickettsia risticii str. Illinois 8220182 YP_003081341.1 CDS NRI_0106 NC_013009.1 92398 92733 D hypothetical protein 92398..92733 Neorickettsia risticii str. Illinois 8220200 YP_003081342.1 CDS NRI_0107 NC_013009.1 93029 93157 R hypothetical protein complement(93029..93157) Neorickettsia risticii str. Illinois 8220183 YP_003081343.1 CDS NRI_0108 NC_013009.1 93238 94137 D hypothetical protein 93238..94137 Neorickettsia risticii str. Illinois 8220201 YP_003081344.1 CDS NRI_0109 NC_013009.1 94568 96016 D hypothetical protein 94568..96016 Neorickettsia risticii str. Illinois 8220184 YP_003081345.1 CDS NRI_0110 NC_013009.1 96453 96689 D hypothetical protein 96453..96689 Neorickettsia risticii str. Illinois 8220202 YP_003081346.1 CDS NRI_0111 NC_013009.1 97093 97893 D hypothetical protein 97093..97893 Neorickettsia risticii str. Illinois 8220185 YP_003081347.1 CDS NRI_0112 NC_013009.1 98269 99096 D hypothetical protein 98269..99096 Neorickettsia risticii str. Illinois 8220203 YP_003081348.1 CDS NRI_0113 NC_013009.1 99449 100276 D hypothetical protein 99449..100276 Neorickettsia risticii str. Illinois 8220204 YP_003081349.1 CDS NRI_0114 NC_013009.1 100554 101459 D hypothetical protein 100554..101459 Neorickettsia risticii str. Illinois 8220205 YP_003081350.1 CDS NRI_0115 NC_013009.1 101516 101719 D hypothetical protein 101516..101719 Neorickettsia risticii str. Illinois 8220206 YP_003081351.1 CDS NRI_0116 NC_013009.1 102598 102738 D hypothetical protein 102598..102738 Neorickettsia risticii str. Illinois 8220207 YP_003081352.1 CDS NRI_0117 NC_013009.1 102931 103158 D hypothetical protein 102931..103158 Neorickettsia risticii str. Illinois 8220208 YP_003081353.1 CDS NRI_0118 NC_013009.1 103476 104216 D hypothetical protein 103476..104216 Neorickettsia risticii str. Illinois 8220209 YP_003081354.1 CDS NRI_0119 NC_013009.1 104556 105464 D hypothetical protein 104556..105464 Neorickettsia risticii str. Illinois 8220210 YP_003081355.1 CDS clpB NC_013009.1 105906 108401 R identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03346; ATP-dependent chaperone ClpB complement(105906..108401) Neorickettsia risticii str. Illinois 8220211 YP_003081356.1 CDS NRI_0122 NC_013009.1 108796 110445 D identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757; ribonuclease, Rne/Rng family 108796..110445 Neorickettsia risticii str. Illinois 8220212 YP_003081357.1 CDS NRI_0121 NC_013009.1 110440 111813 R hypothetical protein complement(110440..111813) Neorickettsia risticii str. Illinois 8220214 YP_003081358.1 CDS nadC NC_013009.1 111917 112759 D identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; nicotinate-nucleotide pyrophosphorylase 111917..112759 Neorickettsia risticii str. Illinois 8220213 YP_003081359.1 CDS rpsP NC_013009.1 112915 113154 D identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; ribosomal protein S16 112915..113154 Neorickettsia risticii str. Illinois 8220215 YP_003081360.1 CDS rimM NC_013009.1 113160 113642 D identified by match to protein family HMM TIGR02273; 16S rRNA processing protein RimM 113160..113642 Neorickettsia risticii str. Illinois 8220216 YP_003081361.1 CDS NRI_0126 NC_013009.1 113648 114874 D identified by match to protein family HMM PF02646; RmuC domain protein 113648..114874 Neorickettsia risticii str. Illinois 8220217 YP_003081362.1 CDS NRI_0127 NC_013009.1 114896 115723 R hypothetical protein complement(114896..115723) Neorickettsia risticii str. Illinois 8220219 YP_003081363.1 CDS tatC NC_013009.1 115929 116720 D identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945; twin arginine-targeting protein translocase TatC 115929..116720 Neorickettsia risticii str. Illinois 8220220 YP_003081364.1 CDS NRI_0129 NC_013009.1 116793 117662 D identified by match to protein family HMM TIGR00536; modification methylase, HemK family 116793..117662 Neorickettsia risticii str. Illinois 8220218 YP_003081365.1 CDS NRI_0130 NC_013009.1 117829 117951 D hypothetical protein 117829..117951 Neorickettsia risticii str. Illinois 8220221 YP_003081366.1 CDS NRI_0131 NC_013009.1 118008 118967 R hypothetical protein complement(118008..118967) Neorickettsia risticii str. Illinois 8220222 YP_003081367.1 CDS atpA NC_013009.1 119216 120745 R identified by match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM TIGR00962; ATP synthase F1 subunit alpha complement(119216..120745) Neorickettsia risticii str. Illinois 8220223 YP_003081368.1 CDS atpH NC_013009.1 120755 121279 R identified by match to protein family HMM PF00213; ATP synthase F1 subunit delta complement(120755..121279) Neorickettsia risticii str. Illinois 8220224 YP_003081369.1 CDS NRI_0134 NC_013009.1 121266 121382 D hypothetical protein 121266..121382 Neorickettsia risticii str. Illinois 8220225 YP_003081370.1 CDS NRI_0135 NC_013009.1 121396 121944 R identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; 5,10-methenyltetrahydrofolate synthetase complement(121396..121944) Neorickettsia risticii str. Illinois 8220226 YP_003081371.1 CDS ispF NC_013009.1 122009 122515 R identified by match to protein family HMM PF02542; match to protein family HMM TIGR00151; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(122009..122515) Neorickettsia risticii str. Illinois 8220227 YP_003081372.1 CDS NRI_0137 NC_013009.1 122527 122679 D hypothetical protein 122527..122679 Neorickettsia risticii str. Illinois 8220228 YP_003081373.1 CDS lolC NC_013009.1 122846 124063 D identified by match to protein family HMM PF02687; lipoprotein releasing system transmembrane protein LolE 122846..124063 Neorickettsia risticii str. Illinois 8220088 YP_003081374.1 CDS NRI_0140 NC_013009.1 124092 124472 R identified by match to protein family HMM PF00849; ribosomal large subunit pseudouridine synthase D complement(124092..124472) Neorickettsia risticii str. Illinois 8220230 YP_003081375.1 CDS NRI_0141 NC_013009.1 124963 125529 D hypothetical protein 124963..125529 Neorickettsia risticii str. Illinois 8220231 YP_003081376.1 CDS NRI_0142 NC_013009.1 125806 126699 R catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase complement(125806..126699) Neorickettsia risticii str. Illinois 8220232 YP_003081377.1 CDS NRI_0143 NC_013009.1 126736 126894 R hypothetical protein complement(126736..126894) Neorickettsia risticii str. Illinois 8220234 YP_003081378.1 CDS NRI_0144 NC_013009.1 127127 128032 D identified by match to protein family HMM PF00589; match to protein family HMM PF02899; tyrosine recombinase XerD 127127..128032 Neorickettsia risticii str. Illinois 8220233 YP_003081379.1 CDS NRI_0145 NC_013009.1 128315 129040 D hypothetical protein 128315..129040 Neorickettsia risticii str. Illinois 8220235 YP_003081380.1 CDS NRI_0146 NC_013009.1 129077 130024 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase, RluA family 129077..130024 Neorickettsia risticii str. Illinois 8220236 YP_003081381.1 CDS NRI_0147 NC_013009.1 130441 131052 D hypothetical protein 130441..131052 Neorickettsia risticii str. Illinois 8220237 YP_003081382.1 CDS NRI_0149 NC_013009.1 131814 132905 D identified by match to protein family HMM TIGR01730; efflux transporter, RND family, MFP subunit 131814..132905 Neorickettsia risticii str. Illinois 8220068 YP_003081383.1 CDS NRI_0150 NC_013009.1 132974 134308 D identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium:alanine symporter family protein 132974..134308 Neorickettsia risticii str. Illinois 8220239 YP_003081384.1 CDS NRI_0151 NC_013009.1 134375 135691 D identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR00857; dihydroorotase 134375..135691 Neorickettsia risticii str. Illinois 8220240 YP_003081385.1 CDS NRI_0153 NC_013009.1 135795 135923 D hypothetical protein 135795..135923 Neorickettsia risticii str. Illinois 8220241 YP_003081386.1 CDS alaS NC_013009.1 135903 138449 R identified by match to protein family HMM PF01411; match to protein family HMM PF07973; match to protein family HMM TIGR00344; alanyl-tRNA synthetase complement(135903..138449) Neorickettsia risticii str. Illinois 8220243 YP_003081387.1 CDS NRI_0154 NC_013009.1 138646 140334 D identified by match to protein family HMM PF03600; transporter 138646..140334 Neorickettsia risticii str. Illinois 8220242 YP_003081388.1 CDS NRI_0155 NC_013009.1 140318 140443 D hypothetical protein 140318..140443 Neorickettsia risticii str. Illinois 8220244 YP_003081389.1 CDS NRI_0157 NC_013009.1 140633 141244 R CcmB-related protein complement(140633..141244) Neorickettsia risticii str. Illinois 8220076 YP_003081390.1 CDS NRI_0158 NC_013009.1 141341 141730 D identified by match to protein family HMM PF01258; DnaK suppressor protein 141341..141730 Neorickettsia risticii str. Illinois 8220246 YP_003081391.1 CDS thyX NC_013009.1 141801 142676 D flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 141801..142676 Neorickettsia risticii str. Illinois 8220247 YP_003081392.1 CDS hflK NC_013009.1 142792 143835 D identified by match to protein family HMM PF01145; match to protein family HMM TIGR01933; HflK protein 142792..143835 Neorickettsia risticii str. Illinois 8220248 YP_003081393.1 CDS hflC NC_013009.1 143832 144692 D identified by match to protein family HMM PF01145; match to protein family HMM TIGR01932; HflC protein 143832..144692 Neorickettsia risticii str. Illinois 8220249 YP_003081394.1 CDS NRI_0162 NC_013009.1 144679 146100 D identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; periplasmic serine protease, DO/DeqQ family 144679..146100 Neorickettsia risticii str. Illinois 8220250 YP_003081395.1 CDS NRI_0163 NC_013009.1 146163 149345 D identified by match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594; DNA polymerase III subunit alpha 146163..149345 Neorickettsia risticii str. Illinois 8220251 YP_003081396.1 CDS NRI_0165 NC_013009.1 149561 150841 R identified by match to protein family HMM PF01713; Smr domain protein complement(149561..150841) Neorickettsia risticii str. Illinois 8220069 YP_003081397.1 CDS dnaN NC_013009.1 150936 152054 D identified by match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663; DNA polymerase III, beta subunit 150936..152054 Neorickettsia risticii str. Illinois 8220253 YP_003081398.1 CDS icd NC_013009.1 152357 153772 R catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase complement(152357..153772) Neorickettsia risticii str. Illinois 8220083 YP_003081399.1 CDS NRI_0169 NC_013009.1 153867 154772 D identified by match to protein family HMM PF03547; auxin Efflux Carrier 153867..154772 Neorickettsia risticii str. Illinois 8220255 YP_003081400.1 CDS NRI_0170 NC_013009.1 155176 156399 D identified by match to protein family HMM PF00675; match to protein family HMM PF05193; processing proteinase 155176..156399 Neorickettsia risticii str. Illinois 8220256 YP_003081401.1 CDS hslV NC_013009.1 156445 157008 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 156445..157008 Neorickettsia risticii str. Illinois 8220257 YP_003081402.1 CDS hslU NC_013009.1 157014 158447 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 157014..158447 Neorickettsia risticii str. Illinois 8220258 YP_003081403.1 CDS ispD NC_013009.1 158450 159145 D identified by match to protein family HMM PF01128; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 158450..159145 Neorickettsia risticii str. Illinois 8220259 YP_003081404.1 CDS pyrD NC_013009.1 159249 160295 D identified by match to protein family HMM PF01180; match to protein family HMM TIGR01036; dihydroorotate oxidase 159249..160295 Neorickettsia risticii str. Illinois 8220260 YP_003081405.1 CDS NRI_0175 NC_013009.1 160513 161835 R identified by match to protein family HMM PF00275; 3-phosphoshikimate 1-carboxyvinyltransferase complement(160513..161835) Neorickettsia risticii str. Illinois 8220262 YP_003081406.1 CDS NRI_0176 NC_013009.1 162081 164912 R hypothetical protein complement(162081..164912) Neorickettsia risticii str. Illinois 8220276 YP_003081407.1 CDS NRI_0177 NC_013009.1 164909 165034 R hypothetical protein complement(164909..165034) Neorickettsia risticii str. Illinois 8220263 YP_003081408.1 CDS NRI_0178 NC_013009.1 165047 165307 R identified by match to protein family HMM PF04066; multiple resistance and pH regulation protein F (MrpF / PhaF) complement(165047..165307) Neorickettsia risticii str. Illinois 8220277 YP_003081409.1 CDS NRI_0179 NC_013009.1 165690 165905 D hypothetical protein 165690..165905 Neorickettsia risticii str. Illinois 8220264 YP_003081410.1 CDS purH NC_013009.1 165932 167404 R identified by match to protein family HMM PF01808; match to protein family HMM PF02142; match to protein family HMM TIGR00355; bifunctional purine biosynthesis protein PurH complement(165932..167404) Neorickettsia risticii str. Illinois 8220261 YP_003081411.1 CDS NRI_0181 NC_013009.1 167621 168544 R identified by match to protein family HMM PF02951; match to protein family HMM PF02955; match to protein family HMM PF08443; glutathione synthetase complement(167621..168544) Neorickettsia risticii str. Illinois 8220265 YP_003081412.1 CDS NRI_0182 NC_013009.1 168806 168949 D hypothetical protein 168806..168949 Neorickettsia risticii str. Illinois 8220278 YP_003081413.1 CDS NRI_0183 NC_013009.1 169232 170677 D identified by match to protein family HMM PF03060; oxidoreductase, 2-nitropropane dioxygenase family 169232..170677 Neorickettsia risticii str. Illinois 8220266 YP_003081414.1 CDS NRI_0184 NC_013009.1 170853 171392 R hypothetical protein complement(170853..171392) Neorickettsia risticii str. Illinois 8220279 YP_003081415.1 CDS NRI_0185 NC_013009.1 171502 172485 R identified by match to protein family HMM PF01594; permease, PerM family complement(171502..172485) Neorickettsia risticii str. Illinois 8220267 YP_003081416.1 CDS NRI_0186 NC_013009.1 172599 175676 R identified by match to protein family HMM PF00873; transporter, AcrB/AcrD/AcrF family complement(172599..175676) Neorickettsia risticii str. Illinois 8220280 YP_003081417.1 CDS purF NC_013009.1 175915 177306 R identified by match to protein family HMM PF00156; match to protein family HMM PF00310; match to protein family HMM TIGR01134; amidophosphoribosyltransferase complement(175915..177306) Neorickettsia risticii str. Illinois 8220268 YP_003081418.1 CDS NRI_0188 NC_013009.1 177347 177739 R hypothetical protein complement(177347..177739) Neorickettsia risticii str. Illinois 8220281 YP_003081419.1 CDS efp NC_013009.1 177736 178359 R identified by match to protein family HMM PF01132; match to protein family HMM PF08207; match to protein family HMM PF09285; translation elongation factor P complement(177736..178359) Neorickettsia risticii str. Illinois 8220269 YP_003081420.1 CDS NRI_0190 NC_013009.1 178415 178672 R hypothetical protein complement(178415..178672) Neorickettsia risticii str. Illinois 8220282 YP_003081421.1 CDS NRI_0191 NC_013009.1 178782 178979 D hypothetical protein 178782..178979 Neorickettsia risticii str. Illinois 8220270 YP_003081422.1 CDS NRI_0192 NC_013009.1 179082 180230 D transporter 179082..180230 Neorickettsia risticii str. Illinois 8220283 YP_003081423.1 CDS NRI_0193 NC_013009.1 180227 181276 D identified by match to protein family HMM PF02463; DNA replication and repair protein RecF 180227..181276 Neorickettsia risticii str. Illinois 8220271 YP_003081424.1 CDS NRI_0194 NC_013009.1 181752 182348 D identified by match to protein family HMM PF01170; match to protein family HMM PF03602; methyltransferase 181752..182348 Neorickettsia risticii str. Illinois 8220284 YP_003081425.1 CDS NRI_0195 NC_013009.1 182500 182745 D identified by match to protein family HMM PF01722; BolA family protein 182500..182745 Neorickettsia risticii str. Illinois 8220272 YP_003081426.1 CDS NRI_0196 NC_013009.1 182767 183087 D identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365; glutaredoxin 182767..183087 Neorickettsia risticii str. Illinois 8220285 YP_003081427.1 CDS pstC NC_013009.1 183165 184208 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter permease complement(183165..184208) Neorickettsia risticii str. Illinois 8220273 YP_003081428.1 CDS NRI_0198 NC_013009.1 184409 185347 D hypothetical protein 184409..185347 Neorickettsia risticii str. Illinois 8220286 YP_003081429.1 CDS priA NC_013009.1 185496 187625 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00595; primosomal protein N' 185496..187625 Neorickettsia risticii str. Illinois 8220274 YP_003081430.1 CDS NRI_0200 NC_013009.1 187830 188939 D hypothetical protein 187830..188939 Neorickettsia risticii str. Illinois 8220287 YP_003081431.1 CDS NRI_0201 NC_013009.1 188945 189568 R identified by match to protein family HMM PF06055; exopolysaccharide synthesis protein complement(188945..189568) Neorickettsia risticii str. Illinois 8220275 YP_003081432.1 CDS NRI_0202 NC_013009.1 189561 190361 R identified by match to protein family HMM PF03524; type IV secretion system protein VirB9 complement(189561..190361) Neorickettsia risticii str. Illinois 8220288 YP_003081433.1 CDS NRI_0203 NC_013009.1 190345 190992 R type IV secretion system protein VirB8 complement(190345..190992) Neorickettsia risticii str. Illinois 8220289 YP_003081434.1 CDS grpE NC_013009.1 191083 191637 D identified by match to protein family HMM PF01025; co-chaperone GrpE 191083..191637 Neorickettsia risticii str. Illinois 8220302 YP_003081435.1 CDS trpS NC_013009.1 191678 192658 D identified by match to protein family HMM PF00579; match to protein family HMM TIGR00233; tryptophanyl-tRNA synthetase 191678..192658 Neorickettsia risticii str. Illinois 8220290 YP_003081436.1 CDS NRI_0206 NC_013009.1 192676 192927 D hypothetical protein 192676..192927 Neorickettsia risticii str. Illinois 8220303 YP_003081437.1 CDS rplT NC_013009.1 192941 193294 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 192941..193294 Neorickettsia risticii str. Illinois 8220291 YP_003081438.1 CDS pheS NC_013009.1 193291 194268 D identified by match to protein family HMM PF01409; match to protein family HMM TIGR00468; phenylalanyl-tRNA synthetase, alpha subunit 193291..194268 Neorickettsia risticii str. Illinois 8220304 YP_003081439.1 CDS rpiB NC_013009.1 194304 194744 D identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120; ribose 5-phosphate isomerase B 194304..194744 Neorickettsia risticii str. Illinois 8220292 YP_003081440.1 CDS glyA NC_013009.1 194744 195985 D identified by match to protein family HMM PF00464; match to protein family HMM PF01212; serine hydroxymethyltransferase 194744..195985 Neorickettsia risticii str. Illinois 8220305 YP_003081441.1 CDS NRI_0211 NC_013009.1 195998 196249 R hypothetical protein complement(195998..196249) Neorickettsia risticii str. Illinois 8220293 YP_003081442.1 CDS NRI_0212 NC_013009.1 196381 197025 D identified by match to protein family HMM PF02581; thiamine-phosphate pyrophosphorylase 196381..197025 Neorickettsia risticii str. Illinois 8220306 YP_003081443.1 CDS carB NC_013009.1 197210 200437 D identified by match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369; carbamoyl-phosphate synthase, large subunit 197210..200437 Neorickettsia risticii str. Illinois 8220294 YP_003081444.1 CDS NRI_0214 NC_013009.1 200537 200653 D hypothetical protein 200537..200653 Neorickettsia risticii str. Illinois 8220307 YP_003081445.1 CDS tldD NC_013009.1 200714 202105 D identified by match to protein family HMM PF01523; TldD protein 200714..202105 Neorickettsia risticii str. Illinois 8220075 YP_003081446.1 CDS purA NC_013009.1 202193 203446 D identified by match to protein family HMM PF00709; adenylosuccinate synthetase 202193..203446 Neorickettsia risticii str. Illinois 8220308 YP_003081447.1 CDS NRI_0218 NC_013009.1 203535 204236 D phosphatidylglycerophosphatase A 203535..204236 Neorickettsia risticii str. Illinois 8220296 YP_003081448.1 CDS NRI_0219 NC_013009.1 204345 204683 R identified by match to protein family HMM PF00085; thioredoxin complement(204345..204683) Neorickettsia risticii str. Illinois 8220309 YP_003081449.1 CDS NRI_0220 NC_013009.1 204819 205829 R identified by match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF07479; glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) complement(204819..205829) Neorickettsia risticii str. Illinois 8220297 YP_003081450.1 CDS NRI_0221 NC_013009.1 205885 206055 R identified by match to protein family HMM PF04002; DNA repair protein RadC, truncated complement(205885..206055) Neorickettsia risticii str. Illinois 8220310 YP_003081451.1 CDS NRI_0222 NC_013009.1 206151 206594 R DNA repair protein RadC complement(206151..206594) Neorickettsia risticii str. Illinois 8220298 YP_003081452.1 CDS NRI_0223 NC_013009.1 206697 207131 R identified by match to protein family HMM PF01381; DNA-binding protein complement(206697..207131) Neorickettsia risticii str. Illinois 8220311 YP_003081453.1 CDS secA NC_013009.1 207409 209823 R identified by match to protein family HMM PF00271; match to protein family HMM PF01043; match to protein family HMM PF07516; match to protein family HMM PF07517; match to protein family HMM TIGR00963; preprotein translocase subunit SecA complement(207409..209823) Neorickettsia risticii str. Illinois 8220299 YP_003081454.1 CDS NRI_0225 NC_013009.1 209889 210050 D hypothetical protein 209889..210050 Neorickettsia risticii str. Illinois 8220312 YP_003081455.1 CDS ctrA NC_013009.1 210309 211103 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator CtrA 210309..211103 Neorickettsia risticii str. Illinois 8220300 YP_003081456.1 CDS purE NC_013009.1 211191 211643 R identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase, catalytic subunit complement(211191..211643) Neorickettsia risticii str. Illinois 8220313 YP_003081457.1 CDS NRI_0228 NC_013009.1 211853 212842 R identified by match to protein family HMM PF00814; match to protein family HMM TIGR00329; sialoglycoprotease complement(211853..212842) Neorickettsia risticii str. Illinois 8220301 YP_003081458.1 CDS NRI_0229 NC_013009.1 212839 213849 R identified by match to protein family HMM TIGR02122; trap transporter solute receptor, taxi family complement(212839..213849) Neorickettsia risticii str. Illinois 8220314 YP_003081459.1 CDS NRI_0230 NC_013009.1 213934 214059 R hypothetical protein complement(213934..214059) Neorickettsia risticii str. Illinois 8220315 YP_003081460.1 CDS NRI_0231 NC_013009.1 214119 215027 D identified by match to protein family HMM PF00348; polyprenyl synthetase family protein 214119..215027 Neorickettsia risticii str. Illinois 8220316 YP_003081461.1 CDS NRI_0232 NC_013009.1 215115 215264 R hypothetical protein complement(215115..215264) Neorickettsia risticii str. Illinois 8220317 YP_003081462.1 CDS NRI_0233 NC_013009.1 215296 216231 D identified by match to protein family HMM PF01925; hypothetical protein 215296..216231 Neorickettsia risticii str. Illinois 8220318 YP_003081463.1 CDS NRI_0234 NC_013009.1 216234 216977 D hypothetical protein 216234..216977 Neorickettsia risticii str. Illinois 8220319 YP_003081464.1 CDS p51 NC_013009.1 217103 218641 R hypothetical protein complement(217103..218641) Neorickettsia risticii str. Illinois 8220320 YP_003081465.1 CDS NRI_0236 NC_013009.1 219047 220459 R identified by match to protein family HMM PF08245; Mur ligase middle domain family complement(219047..220459) Neorickettsia risticii str. Illinois 8220321 YP_003081466.1 CDS nth NC_013009.1 220553 221203 R identified by match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III complement(220553..221203) Neorickettsia risticii str. Illinois 8220322 YP_003081467.1 CDS NRI_0238 NC_013009.1 221277 222014 R identified by match to protein family HMM PF01066; CDP-diacylglycerol--serine O-phosphatidyltransferase complement(221277..222014) Neorickettsia risticii str. Illinois 8220323 YP_003081468.1 CDS psd NC_013009.1 222021 222602 R identified by match to protein family HMM PF02666; phosphatidylserine decarboxylase complement(222021..222602) Neorickettsia risticii str. Illinois 8220324 YP_003081469.1 CDS NRI_0240 NC_013009.1 222765 223196 R identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; hypothetical protein complement(222765..223196) Neorickettsia risticii str. Illinois 8220325 YP_003081470.1 CDS NRI_0241 NC_013009.1 223398 224270 R identified by match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019; succinyl-CoA ligase [ADP-forming] subunit alpha complement(223398..224270) Neorickettsia risticii str. Illinois 8220326 YP_003081471.1 CDS NRI_0242 NC_013009.1 224271 225449 R identified by match to protein family HMM PF00549; match to protein family HMM PF08442; match to protein family HMM TIGR01016; succinyl-CoA synthetase beta chain complement(224271..225449) Neorickettsia risticii str. Illinois 8220327 YP_003081472.1 CDS thiL NC_013009.1 225722 226663 D identified by match to protein family HMM PF02769; match to protein family HMM TIGR01379; thiamine-monophosphate kinase 225722..226663 Neorickettsia risticii str. Illinois 8220081 YP_003081473.1 CDS tpiA NC_013009.1 226756 227568 D identified by match to protein family HMM PF00121; match to protein family HMM TIGR00419; triose-phosphate isomerase 226756..227568 Neorickettsia risticii str. Illinois 8220328 YP_003081474.1 CDS NRI_0246 NC_013009.1 227614 228498 D identified by match to protein family HMM PF00581; rhodanese domain protein 227614..228498 Neorickettsia risticii str. Illinois 8220330 YP_003081475.1 CDS gatA NC_013009.1 228683 230098 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 228683..230098 Neorickettsia risticii str. Illinois 8220331 YP_003081476.1 CDS rpmG NC_013009.1 230190 230369 D identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023; ribosomal protein L33 230190..230369 Neorickettsia risticii str. Illinois 8220332 YP_003081477.1 CDS NRI_0249 NC_013009.1 230385 230933 D involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 230385..230933 Neorickettsia risticii str. Illinois 8220333 YP_003081478.1 CDS dnaA NC_013009.1 231140 232936 D identified by match to protein family HMM PF00308; match to protein family HMM PF08299; match to protein family HMM TIGR00362; chromosomal replication initiator protein DnaA 231140..232936 Neorickettsia risticii str. Illinois 8220334 YP_003081479.1 CDS asd NC_013009.1 233001 234008 D identified by match to protein family HMM PF01118; match to protein family HMM PF02774; aspartate-semialdehyde dehydrogenase 233001..234008 Neorickettsia risticii str. Illinois 8220335 YP_003081480.1 CDS NRI_0252 NC_013009.1 234090 234221 D hypothetical protein 234090..234221 Neorickettsia risticii str. Illinois 8220336 YP_003081481.1 CDS NRI_0253 NC_013009.1 234288 235019 R identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; RNA methyltransferase, TrmH family, group 3 complement(234288..235019) Neorickettsia risticii str. Illinois 8220337 YP_003081482.1 CDS rpsJ NC_013009.1 235418 235657 D identified by match to protein family HMM PF00338; match to protein family HMM TIGR01049; ribosomal protein S10 235418..235657 Neorickettsia risticii str. Illinois 8220071 YP_003081483.1 CDS rplC NC_013009.1 235650 236282 D identified by match to protein family HMM PF00297; 50S ribosomal protein L3 235650..236282 Neorickettsia risticii str. Illinois 8220339 YP_003081484.1 CDS rplD NC_013009.1 236282 236926 D identified by match to protein family HMM PF00573; ribosomal protein L4/L1 family 236282..236926 Neorickettsia risticii str. Illinois 8220340 YP_003081485.1 CDS NRI_0259 NC_013009.1 236923 237207 D ribosomal protein L23 236923..237207 Neorickettsia risticii str. Illinois 8220341 YP_003081486.1 CDS rplB NC_013009.1 237212 238051 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 237212..238051 Neorickettsia risticii str. Illinois 8220342 YP_003081487.1 CDS NRI_0261 NC_013009.1 238171 238335 D identified by match to protein family HMM PF00203; ribosomal protein S19 238171..238335 Neorickettsia risticii str. Illinois 8220343 YP_003081488.1 CDS rplV NC_013009.1 238332 238673 D identified by match to protein family HMM PF00237; match to protein family HMM TIGR01044; 50S ribosomal protein L22 238332..238673 Neorickettsia risticii str. Illinois 8220344 YP_003081489.1 CDS rpsC NC_013009.1 238657 239292 D identified by match to protein family HMM PF00189; match to protein family HMM PF00417; match to protein family HMM PF07650; match to protein family HMM TIGR01009; 30S ribosomal protein S3 238657..239292 Neorickettsia risticii str. Illinois 8220345 YP_003081490.1 CDS rplP NC_013009.1 239308 239727 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 239308..239727 Neorickettsia risticii str. Illinois 8220346 YP_003081491.1 CDS NRI_0265 NC_013009.1 239766 239918 D hypothetical protein 239766..239918 Neorickettsia risticii str. Illinois 8220347 YP_003081492.1 CDS rpsQ NC_013009.1 239920 240144 D identified by match to protein family HMM PF00366; ribosomal protein S17 239920..240144 Neorickettsia risticii str. Illinois 8220348 YP_003081493.1 CDS rplN NC_013009.1 240162 240521 D identified by match to protein family HMM PF00238; match to protein family HMM TIGR01067; 50S ribosomal protein L14 240162..240521 Neorickettsia risticii str. Illinois 8220349 YP_003081494.1 CDS NRI_0268 NC_013009.1 240518 240832 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 240518..240832 Neorickettsia risticii str. Illinois 8220350 YP_003081495.1 CDS rplE NC_013009.1 240848 241381 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 240848..241381 Neorickettsia risticii str. Illinois 8220351 YP_003081496.1 CDS NRI_0270 NC_013009.1 241399 241704 D identified by match to protein family HMM PF00253; ribosomal protein S14 241399..241704 Neorickettsia risticii str. Illinois 8220352 YP_003081497.1 CDS rpsH NC_013009.1 241724 242119 D identified by match to protein family HMM PF00410; 30S ribosomal protein S8 241724..242119 Neorickettsia risticii str. Illinois 8220353 YP_003081498.1 CDS NRI_0272 NC_013009.1 242120 242650 D identified by match to protein family HMM PF00347; 50S ribosomal protein L6 242120..242650 Neorickettsia risticii str. Illinois 8220354 YP_003081499.1 CDS NRI_0273 NC_013009.1 242742 243023 D 50S ribosomal protein L18 242742..243023 Neorickettsia risticii str. Illinois 8220355 YP_003081500.1 CDS rpsE NC_013009.1 243040 243558 D identified by match to protein family HMM PF00333; match to protein family HMM PF03719; match to protein family HMM TIGR01021; 30S ribosomal protein S5 243040..243558 Neorickettsia risticii str. Illinois 8220357 YP_003081501.1 CDS NRI_0275 NC_013009.1 243555 244004 D identified by match to protein family HMM PF01305; 50S ribosomal protein L15 243555..244004 Neorickettsia risticii str. Illinois 8220370 YP_003081502.1 CDS NRI_0276 NC_013009.1 244001 245311 D identified by match to protein family HMM PF00344; match to protein family HMM TIGR00967; preprotein translocase subunit SecY 244001..245311 Neorickettsia risticii str. Illinois 8220358 YP_003081503.1 CDS NRI_0277 NC_013009.1 245308 245937 D identified by match to protein family HMM PF00406; adenylate kinase 245308..245937 Neorickettsia risticii str. Illinois 8220371 YP_003081504.1 CDS rpsM NC_013009.1 245951 246322 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 245951..246322 Neorickettsia risticii str. Illinois 8220359 YP_003081505.1 CDS rpsK NC_013009.1 246335 246697 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 246335..246697 Neorickettsia risticii str. Illinois 8220372 YP_003081506.1 CDS rpoA NC_013009.1 246735 247736 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 246735..247736 Neorickettsia risticii str. Illinois 8220360 YP_003081507.1 CDS rplQ NC_013009.1 247815 248108 D identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059; ribosomal protein L17 247815..248108 Neorickettsia risticii str. Illinois 8220373 YP_003081508.1 CDS NRI_0282 NC_013009.1 248127 248450 R identified by match to protein family HMM PF00376; MerR family transcriptional regulator complement(248127..248450) Neorickettsia risticii str. Illinois 8220361 YP_003081509.1 CDS pgpA NC_013009.1 248437 248946 R identified by match to protein family HMM PF04608; phosphatidylglycerophosphatase A complement(248437..248946) Neorickettsia risticii str. Illinois 8220374 YP_003081510.1 CDS infC NC_013009.1 248933 249400 R identified by match to protein family HMM PF00707; match to protein family HMM PF05198; translation initiation factor IF-3 complement(248933..249400) Neorickettsia risticii str. Illinois 8220362 YP_003081511.1 CDS thrS NC_013009.1 249515 251458 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(249515..251458) Neorickettsia risticii str. Illinois 8220375 YP_003081512.1 CDS NRI_0287 NC_013009.1 251673 252617 R hypothetical protein complement(251673..252617) Neorickettsia risticii str. Illinois 8220080 YP_003081513.1 CDS NRI_0288 NC_013009.1 252636 252971 R identified by match to protein family HMM PF00111; iron-sulfur cluster binding protein complement(252636..252971) Neorickettsia risticii str. Illinois 8220376 YP_003081514.1 CDS NRI_0289 NC_013009.1 252973 254754 R identified by match to protein family HMM PF00012; chaperone protein complement(252973..254754) Neorickettsia risticii str. Illinois 8220364 YP_003081515.1 CDS NRI_0290 NC_013009.1 254732 255109 R identified by match to protein family HMM PF07743; chaperone protein HscB complement(254732..255109) Neorickettsia risticii str. Illinois 8220377 YP_003081516.1 CDS NRI_0291 NC_013009.1 255093 255212 R chaperone protein HscB complement(255093..255212) Neorickettsia risticii str. Illinois 8220365 YP_003081517.1 CDS NRI_0292 NC_013009.1 255330 255695 R identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; iron-sulfur cluster assembly accessory protein complement(255330..255695) Neorickettsia risticii str. Illinois 8220378 YP_003081518.1 CDS iscU NC_013009.1 255723 256151 R identified by match to protein family HMM PF01592; match to protein family HMM TIGR01999; scaffold protein complement(255723..256151) Neorickettsia risticii str. Illinois 8220366 YP_003081519.1 CDS iscS NC_013009.1 256207 257421 R identified by match to protein family HMM PF00266; match to protein family HMM PF01212; cysteine desulfurase complement(256207..257421) Neorickettsia risticii str. Illinois 8220379 YP_003081520.1 CDS NRI_0295 NC_013009.1 257459 259027 R identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM PF02082; match to protein family HMM TIGR00738; Rrf2/aminotransferase, class V family protein complement(257459..259027) Neorickettsia risticii str. Illinois 8220367 YP_003081521.1 CDS NRI_0296 NC_013009.1 259377 261011 D transporter 259377..261011 Neorickettsia risticii str. Illinois 8220380 YP_003081522.1 CDS NRI_0297 NC_013009.1 260995 261579 D identified by match to protein family HMM PF01386; match to protein family HMM TIGR00731; ribosomal protein L25, Ctc-form 260995..261579 Neorickettsia risticii str. Illinois 8220368 YP_003081523.1 CDS NRI_0298 NC_013009.1 261663 262169 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 261663..262169 Neorickettsia risticii str. Illinois 8220381 YP_003081524.1 CDS gshA NC_013009.1 262219 263442 R identified by match to protein family HMM PF08886; match to protein family HMM TIGR02049; glutamate--cysteine ligase complement(262219..263442) Neorickettsia risticii str. Illinois 8220369 YP_003081525.1 CDS NRI_0300 NC_013009.1 263472 263591 D hypothetical protein 263472..263591 Neorickettsia risticii str. Illinois 8220382 YP_003081526.1 CDS coaE NC_013009.1 263626 264228 R identified by match to protein family HMM PF01121; match to protein family HMM TIGR00152; dephospho-CoA kinase complement(263626..264228) Neorickettsia risticii str. Illinois 8220356 YP_003081527.1 CDS NRI_0302 NC_013009.1 264228 264989 R identified by match to protein family HMM PF01513; ATP-NAD/AcoX kinase complement(264228..264989) Neorickettsia risticii str. Illinois 8220383 YP_003081528.1 CDS grxC NC_013009.1 264992 265129 R glutaredoxin complement(264992..265129) Neorickettsia risticii str. Illinois 8220397 YP_003081529.1 CDS NRI_0304 NC_013009.1 265451 265564 D hypothetical protein 265451..265564 Neorickettsia risticii str. Illinois 8220384 YP_003081530.1 CDS rpoD NC_013009.1 265791 267653 R identified by match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM TIGR02937; RNA polymerase sigma-70 factor (RpoD) complement(265791..267653) Neorickettsia risticii str. Illinois 8220398 YP_003081531.1 CDS NRI_0306 NC_013009.1 267755 269977 R identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; ATP-dependent Clp protease, ATP-binding subunit ClpA complement(267755..269977) Neorickettsia risticii str. Illinois 8220385 YP_003081532.1 CDS NRI_0307 NC_013009.1 270004 270315 R hypothetical protein complement(270004..270315) Neorickettsia risticii str. Illinois 8220399 YP_003081533.1 CDS glnQ NC_013009.1 270382 271056 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(270382..271056) Neorickettsia risticii str. Illinois 8220386 YP_003081534.1 CDS NRI_0309 NC_013009.1 271217 271417 D hypothetical protein 271217..271417 Neorickettsia risticii str. Illinois 8220400 YP_003081535.1 CDS NRI_0310 NC_013009.1 271524 273728 R identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360; ComEC/Rec2 family protein complement(271524..273728) Neorickettsia risticii str. Illinois 8220387 YP_003081536.1 CDS NRI_0311 NC_013009.1 273862 274794 D identified by match to protein family HMM PF01571; match to protein family HMM TIGR03317; aminomethyl transferase 273862..274794 Neorickettsia risticii str. Illinois 8220401 YP_003081537.1 CDS NRI_0312 NC_013009.1 274908 275126 D hypothetical protein 274908..275126 Neorickettsia risticii str. Illinois 8220388 YP_003081538.1 CDS NRI_0313 NC_013009.1 275239 275397 D preprotein translocase subunit YajC 275239..275397 Neorickettsia risticii str. Illinois 8220402 YP_003081539.1 CDS pdxJ NC_013009.1 275434 276147 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 275434..276147 Neorickettsia risticii str. Illinois 8220389 YP_003081540.1 CDS NRI_0315 NC_013009.1 276265 276525 D identified by match to protein family HMM PF00830; ribosomal protein L28 276265..276525 Neorickettsia risticii str. Illinois 8220403 YP_003081541.1 CDS lipA NC_013009.1 276500 277390 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 276500..277390 Neorickettsia risticii str. Illinois 8220390 YP_003081542.1 CDS NRI_0317 NC_013009.1 277559 278038 D identified by match to protein family HMM PF03364; aromatic rich family protein 277559..278038 Neorickettsia risticii str. Illinois 8220404 YP_003081543.1 CDS NRI_0318 NC_013009.1 278157 278969 R identified by match to protein family HMM PF03618; hypothetical protein complement(278157..278969) Neorickettsia risticii str. Illinois 8220391 YP_003081544.1 CDS NRI_0320 NC_013009.1 279548 280249 D identified by match to protein family HMM PF00571; hypothetical protein 279548..280249 Neorickettsia risticii str. Illinois 8220061 YP_003081545.1 CDS NRI_0321 NC_013009.1 280362 281837 D hypothetical protein 280362..281837 Neorickettsia risticii str. Illinois 8220392 YP_003081546.1 CDS NRI_0322 NC_013009.1 281873 282004 D hypothetical protein 281873..282004 Neorickettsia risticii str. Illinois 8220406 YP_003081547.1 CDS NRI_0323 NC_013009.1 282035 282454 D identified by match to protein family HMM PF00037; ferredoxin 282035..282454 Neorickettsia risticii str. Illinois 8220393 YP_003081548.1 CDS NRI_0324 NC_013009.1 282476 282928 D hypothetical protein 282476..282928 Neorickettsia risticii str. Illinois 8220407 YP_003081549.1 CDS NRI_0325 NC_013009.1 282925 283050 D hypothetical protein 282925..283050 Neorickettsia risticii str. Illinois 8220394 YP_003081550.1 CDS cysS NC_013009.1 283122 284576 D identified by match to protein family HMM PF01406; match to protein family HMM PF09190; match to protein family HMM PF09334; match to protein family HMM TIGR00435; cysteinyl-tRNA synthetase 283122..284576 Neorickettsia risticii str. Illinois 8220408 YP_003081551.1 CDS NRI_0327 NC_013009.1 284785 284931 R hypothetical protein complement(284785..284931) Neorickettsia risticii str. Illinois 8220395 YP_003081552.1 CDS mutS NC_013009.1 285058 287505 D identified by match to protein family HMM PF00488; match to protein family HMM PF01624; match to protein family HMM PF05188; match to protein family HMM PF05190; match to protein family HMM PF05192; match to protein family HMM TIGR01070; DNA mismatch repair protein MutS 285058..287505 Neorickettsia risticii str. Illinois 8220409 YP_003081553.1 CDS rpe NC_013009.1 287804 288457 D identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; ribulose-phosphate 3-epimerase 287804..288457 Neorickettsia risticii str. Illinois 8220396 YP_003081554.1 CDS map NC_013009.1 288605 289393 R identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase, type I complement(288605..289393) Neorickettsia risticii str. Illinois 8220410 YP_003081555.1 CDS NRI_0331 NC_013009.1 289599 290126 R identified by match to protein family HMM PF03232; Coq7 family protein complement(289599..290126) Neorickettsia risticii str. Illinois 8220412 YP_003081556.1 CDS NRI_0332 NC_013009.1 290104 290313 R disulfide bond formation protein, DsbB family complement(290104..290313) Neorickettsia risticii str. Illinois 8220411 YP_003081557.1 CDS rpoH NC_013009.1 291112 291978 D identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; RNA polymerase sigma-32 factor (RpoH) 291112..291978 Neorickettsia risticii str. Illinois 8220413 YP_003081558.1 CDS ftsZ NC_013009.1 291985 293103 D identified by match to protein family HMM PF00091; match to protein family HMM PF03953; match to protein family HMM TIGR00065; cell division protein FtsZ 291985..293103 Neorickettsia risticii str. Illinois 8220425 YP_003081559.1 CDS NRI_0335 NC_013009.1 293435 293995 D identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; ribosomal subunit interface protein 293435..293995 Neorickettsia risticii str. Illinois 8220426 YP_003081560.1 CDS tyrS NC_013009.1 294333 295508 R identified by match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234; tyrosyl-tRNA synthetase complement(294333..295508) Neorickettsia risticii str. Illinois 8220427 YP_003081561.1 CDS bfr NC_013009.1 295528 295989 R identified by match to protein family HMM PF00210; match to protein family HMM TIGR00754; bacterioferritin complement(295528..295989) Neorickettsia risticii str. Illinois 8220428 YP_003081562.1 CDS lon NC_013009.1 296218 298698 R identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763; ATP-dependent protease La complement(296218..298698) Neorickettsia risticii str. Illinois 8220429 YP_003081563.1 CDS NRI_0339 NC_013009.1 298752 299330 R identified by match to protein family HMM PF02581; thiamine monophosphate synthase/teni subfamily complement(298752..299330) Neorickettsia risticii str. Illinois 8220430 YP_003081564.1 CDS NRI_0340 NC_013009.1 299330 299761 R identified by match to protein family HMM PF03653; match to protein family HMM TIGR00701; hypothetical protein complement(299330..299761) Neorickettsia risticii str. Illinois 8220431 YP_003081565.1 CDS NRI_0341 NC_013009.1 299768 301138 R identified by match to protein family HMM PF00120; match to protein family HMM PF03951; glutamine synthetase complement(299768..301138) Neorickettsia risticii str. Illinois 8220432 YP_003081566.1 CDS nrdR NC_013009.1 301422 301871 D identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; NrdR family transcriptional regulator 301422..301871 Neorickettsia risticii str. Illinois 8220433 YP_003081567.1 CDS NRI_0343 NC_013009.1 302145 303590 R Contains a frameshift based on matches to NSE_0356 (helicase, UvrD/Rep family), if combined with NRI_0344 (ORF00332) Identified by match to protein family HMM PF00580.; DNA helicase II, UvrD/Rep family, N-terminal fragment complement(302145..303590) Neorickettsia risticii str. Illinois 8220434 YP_003081568.1 CDS NRI_0344 NC_013009.1 303616 304101 R Contains a frameshift based on matches to NSE_0356 (helicase, UvrD/Rep family), if combined with NRI_0343 (ORF00331); DNA helicase II, UvrD/Rep family, C-terminal fragment complement(303616..304101) Neorickettsia risticii str. Illinois 8220435 YP_003081569.1 CDS NRI_0345 NC_013009.1 304403 305179 R identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; hydrolase, TatD family complement(304403..305179) Neorickettsia risticii str. Illinois 8220982 YP_003081570.1 CDS NRI_0346 NC_013009.1 305193 305366 R hypothetical protein complement(305193..305366) Neorickettsia risticii str. Illinois 8220436 YP_003081571.1 CDS secB NC_013009.1 305452 305949 R identified by match to protein family HMM PF02556; match to protein family HMM TIGR00809; protein-export chaperone SecB complement(305452..305949) Neorickettsia risticii str. Illinois 8220437 YP_003081572.1 CDS NRI_0348 NC_013009.1 306075 306701 D identified by match to protein family HMM PF04280; hypothetical protein 306075..306701 Neorickettsia risticii str. Illinois 8220414 YP_003081573.1 CDS ksgA NC_013009.1 306933 307721 R identified by match to protein family HMM PF00398; match to protein family HMM TIGR00755; dimethyladenosine transferase complement(306933..307721) Neorickettsia risticii str. Illinois 8220439 YP_003081574.1 CDS NRI_0350 NC_013009.1 308022 309146 D hypothetical protein 308022..309146 Neorickettsia risticii str. Illinois 8220440 YP_003081575.1 CDS cckA NC_013009.1 309136 311373 D identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase/response regulator CckA 309136..311373 Neorickettsia risticii str. Illinois 8220441 YP_003081576.1 CDS proS NC_013009.1 311370 312680 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 311370..312680 Neorickettsia risticii str. Illinois 8220442 YP_003081577.1 CDS NRI_0353 NC_013009.1 312708 313415 D hypothetical protein 312708..313415 Neorickettsia risticii str. Illinois 8220443 YP_003081578.1 CDS ppdK NC_013009.1 313544 316147 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 313544..316147 Neorickettsia risticii str. Illinois 8220444 YP_003081579.1 CDS NRI_0355 NC_013009.1 316341 316901 R identified by match to protein family HMM PF01243; pyridoxamine 5'-phosphate oxidase complement(316341..316901) Neorickettsia risticii str. Illinois 8220445 YP_003081580.1 CDS NRI_0356 NC_013009.1 317247 317987 D hypothetical protein 317247..317987 Neorickettsia risticii str. Illinois 8220446 YP_003081581.1 CDS nifR NC_013009.1 318112 319053 R identified by match to protein family HMM PF01207; match to protein family HMM TIGR00737; NifR3 family protein complement(318112..319053) Neorickettsia risticii str. Illinois 8220447 YP_003081582.1 CDS NRI_0358 NC_013009.1 319319 320083 R identified by match to protein family HMM PF01975; match to protein family HMM TIGR00087; acid phosphatase SurE complement(319319..320083) Neorickettsia risticii str. Illinois 8220448 YP_003081583.1 CDS NRI_0359 NC_013009.1 320353 321786 D identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM TIGR01812; succinate dehydrogenase flavoprotein subunit 320353..321786 Neorickettsia risticii str. Illinois 8220449 YP_003081584.1 CDS NRI_0360 NC_013009.1 321749 322147 D identified by match to protein family HMM PF02910; succinate dehydrogenase flavoprotein subunit 321749..322147 Neorickettsia risticii str. Illinois 8220450 YP_003081585.1 CDS NRI_0361 NC_013009.1 322268 323068 R hypothetical protein complement(322268..323068) Neorickettsia risticii str. Illinois 8220451 YP_003081586.1 CDS NRI_0362 NC_013009.1 323557 324567 D identified by match to protein family HMM PF08240; quinone oxidoreductase 323557..324567 Neorickettsia risticii str. Illinois 8220415 YP_003081587.1 CDS NRI_0363 NC_013009.1 324725 324886 R hypothetical protein complement(324725..324886) Neorickettsia risticii str. Illinois 8220452 YP_003081588.1 CDS NRI_0364 NC_013009.1 324861 325151 D identified by match to protein family HMM PF04800; NADH:ubiquinone oxidoreductase 18 kda subunit 324861..325151 Neorickettsia risticii str. Illinois 8220438 YP_003081589.1 CDS NRI_0365 NC_013009.1 325148 326281 D identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988; ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 325148..326281 Neorickettsia risticii str. Illinois 8220453 YP_003081590.1 CDS hemC NC_013009.1 326295 327155 D identified by match to protein family HMM PF01379; match to protein family HMM PF03900; match to protein family HMM TIGR00212; porphobilinogen deaminase 326295..327155 Neorickettsia risticii str. Illinois 8220454 YP_003081591.1 CDS NRI_0367 NC_013009.1 327570 328505 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993; NADH-ubiquinone oxidoreductase complement(327570..328505) Neorickettsia risticii str. Illinois 8220455 YP_003081592.1 CDS NRI_0368 NC_013009.1 328766 328885 R hypothetical protein complement(328766..328885) Neorickettsia risticii str. Illinois 8220456 YP_003081593.1 CDS NRI_0369 NC_013009.1 328933 330060 R identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA processing chain A complement(328933..330060) Neorickettsia risticii str. Illinois 8220457 YP_003081594.1 CDS NRI_0370 NC_013009.1 330177 330623 D hypothetical protein 330177..330623 Neorickettsia risticii str. Illinois 8220458 YP_003081595.1 CDS NRI_0372 NC_013009.1 330927 331076 D hypothetical protein 330927..331076 Neorickettsia risticii str. Illinois 8220070 YP_003081596.1 CDS def NC_013009.1 331239 331856 D identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079; peptide deformylase 331239..331856 Neorickettsia risticii str. Illinois 8220460 YP_003081597.1 CDS hemB NC_013009.1 332209 333174 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 332209..333174 Neorickettsia risticii str. Illinois 8220092 YP_003081598.1 CDS NRI_0376 NC_013009.1 333373 334212 R identified by match to protein family HMM PF03631; YihY family protein complement(333373..334212) Neorickettsia risticii str. Illinois 8220462 YP_003081599.1 CDS atpB NC_013009.1 334322 335053 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 334322..335053 Neorickettsia risticii str. Illinois 8220463 YP_003081600.1 CDS NRI_0378 NC_013009.1 335076 335303 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 335076..335303 Neorickettsia risticii str. Illinois 8220464 YP_003081601.1 CDS NRI_0379 NC_013009.1 335304 335834 D identified by match to protein family HMM PF02326; ATP synthase F0 subunit B' 335304..335834 Neorickettsia risticii str. Illinois 8220416 YP_003081602.1 CDS NRI_0380 NC_013009.1 335825 336319 D ATPase F0, B chain 335825..336319 Neorickettsia risticii str. Illinois 8220466 YP_003081603.1 CDS NRI_0381 NC_013009.1 336309 336599 D hypothetical protein 336309..336599 Neorickettsia risticii str. Illinois 8220417 YP_003081604.1 CDS ribH NC_013009.1 336773 337222 R identified by match to protein family HMM PF00885; match to protein family HMM TIGR00114; 6,7-dimethyl-8-ribityllumazine synthase complement(336773..337222) Neorickettsia risticii str. Illinois 8220467 YP_003081605.1 CDS NRI_0383 NC_013009.1 337369 339126 R identified by match to protein family HMM PF02096; hypothetical protein complement(337369..339126) Neorickettsia risticii str. Illinois 8220418 YP_003081606.1 CDS NRI_0384 NC_013009.1 339327 340619 D identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; hypothetical protein 339327..340619 Neorickettsia risticii str. Illinois 8220468 YP_003081607.1 CDS prfA NC_013009.1 340768 341871 D identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00019; peptide chain release factor 1 340768..341871 Neorickettsia risticii str. Illinois 8220419 YP_003081608.1 CDS plsC NC_013009.1 341989 342771 D identified by match to protein family HMM PF01553; 1-acyl-sn-glycerol-3-phosphate acyltransferase family protein 341989..342771 Neorickettsia risticii str. Illinois 8220469 YP_003081609.1 CDS NRI_0387 NC_013009.1 342872 344533 D identified by match to protein family HMM PF00575; ribosomal protein S1 342872..344533 Neorickettsia risticii str. Illinois 8220420 YP_003081610.1 CDS NRI_0388 NC_013009.1 344551 345477 D identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706; signal peptide peptidase SppA, 36K type 344551..345477 Neorickettsia risticii str. Illinois 8220470 YP_003081611.1 CDS NRI_0389 NC_013009.1 345557 347230 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease 345557..347230 Neorickettsia risticii str. Illinois 8220421 YP_003081612.1 CDS NRI_0390 NC_013009.1 347301 349127 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(347301..349127) Neorickettsia risticii str. Illinois 8220471 YP_003081614.1 CDS NRI_0393 NC_013009.1 349654 350001 D identified by match to protein family HMM PF01230; HIT domain protein 349654..350001 Neorickettsia risticii str. Illinois 8220082 YP_003081615.1 CDS xth NC_013009.1 350274 351056 D identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III 350274..351056 Neorickettsia risticii str. Illinois 8220423 YP_003081616.1 CDS NRI_0395 NC_013009.1 351129 351245 R hypothetical protein complement(351129..351245) Neorickettsia risticii str. Illinois 8220472 YP_003081617.1 CDS NRI_0396 NC_013009.1 351260 352069 R identified by match to protein family HMM PF00156; competence protein F complement(351260..352069) Neorickettsia risticii str. Illinois 8220465 YP_003081618.1 CDS secF NC_013009.1 352261 353157 R identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00966; protein-export membrane protein SecF complement(352261..353157) Neorickettsia risticii str. Illinois 8220473 YP_003081619.1 CDS NRI_0398 NC_013009.1 353511 353672 D hypothetical protein 353511..353672 Neorickettsia risticii str. Illinois 8220474 YP_003081620.1 CDS NRI_0399 NC_013009.1 353690 355483 D NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 353690..355483 Neorickettsia risticii str. Illinois 8220475 YP_003081621.1 CDS NRI_0400 NC_013009.1 355437 355946 D Contains a frameshift based on matches to NSE_0420, if combined with NRI_0399 (ORF00384); NADP-dependent malic enzyme, C-terminal fragment 355437..355946 Neorickettsia risticii str. Illinois 8220983 YP_003081622.1 CDS NRI_0401 NC_013009.1 356097 356477 R hypothetical protein complement(356097..356477) Neorickettsia risticii str. Illinois 8220476 YP_003081623.1 CDS NRI_0402 NC_013009.1 356474 358384 R identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; metalloprotease complement(356474..358384) Neorickettsia risticii str. Illinois 8220477 YP_003081624.1 CDS pheT NC_013009.1 358673 361303 D identified by match to protein family HMM PF01588; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472; phenylalanyl-tRNA synthetase, beta subunit 358673..361303 Neorickettsia risticii str. Illinois 8220424 YP_003081625.1 CDS ftsA NC_013009.1 361378 362583 D identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA 361378..362583 Neorickettsia risticii str. Illinois 8220478 YP_003081626.1 CDS NRI_0405 NC_013009.1 362904 363257 R hypothetical protein complement(362904..363257) Neorickettsia risticii str. Illinois 8220492 YP_003081627.1 CDS NRI_0406 NC_013009.1 363461 363916 D identified by match to protein family HMM PF00507; NADH dehydrogenase I subunit A 363461..363916 Neorickettsia risticii str. Illinois 8220479 YP_003081628.1 CDS NRI_0407 NC_013009.1 364097 364600 D The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 364097..364600 Neorickettsia risticii str. Illinois 8220493 YP_003081629.1 CDS NRI_0408 NC_013009.1 364616 365176 D identified by match to protein family HMM PF00329; match to protein family HMM TIGR01961; NADH-quinone oxidoreductase subunit C1 364616..365176 Neorickettsia risticii str. Illinois 8220480 YP_003081630.1 CDS gap NC_013009.1 365297 366340 D identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I 365297..366340 Neorickettsia risticii str. Illinois 8220077 YP_003081631.1 CDS pgk NC_013009.1 366656 367792 D identified by match to protein family HMM PF00162; phosphoglycerate kinase 366656..367792 Neorickettsia risticii str. Illinois 8220481 YP_003081632.1 CDS ispH NC_013009.1 367896 368807 R identified by match to protein family HMM PF02401; match to protein family HMM TIGR00216; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(367896..368807) Neorickettsia risticii str. Illinois 8220495 YP_003081633.1 CDS NRI_0413 NC_013009.1 368942 369061 D hypothetical protein 368942..369061 Neorickettsia risticii str. Illinois 8220482 YP_003081634.1 CDS NRI_0414 NC_013009.1 369027 369323 D hypothetical protein 369027..369323 Neorickettsia risticii str. Illinois 8220496 YP_003081635.1 CDS NRI_0415 NC_013009.1 369320 370030 D hypothetical protein 369320..370030 Neorickettsia risticii str. Illinois 8220483 YP_003081636.1 CDS NRI_0416 NC_013009.1 370011 370148 D hypothetical protein 370011..370148 Neorickettsia risticii str. Illinois 8220497 YP_003081637.1 CDS NRI_0417 NC_013009.1 370124 371296 D identified by match to protein family HMM PF00563; EAL domain protein 370124..371296 Neorickettsia risticii str. Illinois 8220484 YP_003081638.1 CDS dxr NC_013009.1 371293 372462 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 371293..372462 Neorickettsia risticii str. Illinois 8220498 YP_003081639.1 CDS NRI_0418 NC_013009.1 372425 372538 R hypothetical protein complement(372425..372538) Neorickettsia risticii str. Illinois 8220499 YP_003081640.1 CDS obgE NC_013009.1 372658 373683 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(372658..373683) Neorickettsia risticii str. Illinois 8220485 YP_003081641.1 CDS NRI_0421 NC_013009.1 373714 373848 R hypothetical protein complement(373714..373848) Neorickettsia risticii str. Illinois 8220486 YP_003081642.1 CDS NRI_0422 NC_013009.1 374203 374877 D identified by match to protein family HMM PF00106; oxidoreductase, short-chain dehydrogenase/reductase family 374203..374877 Neorickettsia risticii str. Illinois 8220500 YP_003081643.1 CDS NRI_0423 NC_013009.1 374974 375897 D identified by match to protein family HMM PF00589; match to protein family HMM PF02899; site-specific recombinase, phage integrase family 374974..375897 Neorickettsia risticii str. Illinois 8220487 YP_003081644.1 CDS NRI_0424 NC_013009.1 376116 376838 R phosphoribosylformylglycinamidine synthase complement(376116..376838) Neorickettsia risticii str. Illinois 8220501 YP_003081645.1 CDS NRI_0425 NC_013009.1 376930 379683 R hypothetical protein complement(376930..379683) Neorickettsia risticii str. Illinois 8220488 YP_003081646.1 CDS NRI_0426 NC_013009.1 380017 380139 D hypothetical protein 380017..380139 Neorickettsia risticii str. Illinois 8220502 YP_003081647.1 CDS NRI_0427 NC_013009.1 380139 380573 D acyl carrier protein 380139..380573 Neorickettsia risticii str. Illinois 8220489 YP_003081648.1 CDS fabF NC_013009.1 380574 381821 D identified by match to protein family HMM PF00109; match to protein family HMM PF02801; match to protein family HMM TIGR03150; 3-oxoacyl-ACP synthase II 380574..381821 Neorickettsia risticii str. Illinois 8220503 YP_003081649.1 CDS hemF NC_013009.1 381822 382673 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 381822..382673 Neorickettsia risticii str. Illinois 8220490 YP_003081650.1 CDS NRI_0430 NC_013009.1 382718 383299 D identified by match to protein family HMM TIGR02281; hypothetical protein 382718..383299 Neorickettsia risticii str. Illinois 8220504 YP_003081651.1 CDS NRI_0431 NC_013009.1 383417 385501 D hypothetical protein 383417..385501 Neorickettsia risticii str. Illinois 8220491 YP_003081652.1 CDS NRI_0432 NC_013009.1 385784 386320 R iron-sulfur cluster assembly accessory protein complement(385784..386320) Neorickettsia risticii str. Illinois 8220505 YP_003081653.1 CDS NRI_0433 NC_013009.1 386680 387837 D identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR01353; deoxyguanosinetriphosphate triphosphohydrolase 386680..387837 Neorickettsia risticii str. Illinois 8220520 YP_003081654.1 CDS recO NC_013009.1 387892 388608 D identified by match to protein family HMM TIGR00613; DNA repair protein RecO 387892..388608 Neorickettsia risticii str. Illinois 8220506 YP_003081655.1 CDS NRI_0435 NC_013009.1 388598 388780 D hypothetical protein 388598..388780 Neorickettsia risticii str. Illinois 8220521 YP_003081656.1 CDS NRI_0436 NC_013009.1 389096 389557 D identified by match to protein family HMM PF07031; hypothetical protein 389096..389557 Neorickettsia risticii str. Illinois 8220059 YP_003081657.1 CDS NRI_0437 NC_013009.1 389644 389772 D hypothetical protein 389644..389772 Neorickettsia risticii str. Illinois 8220522 YP_003081658.1 CDS lpdA-1 NC_013009.1 389796 391169 D identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01350; dihydrolipoyl dehydrogenase 389796..391169 Neorickettsia risticii str. Illinois 8220508 YP_003081659.1 CDS NRI_0439 NC_013009.1 391250 391603 D hypothetical protein 391250..391603 Neorickettsia risticii str. Illinois 8220523 YP_003081660.1 CDS NRI_0440 NC_013009.1 391779 393092 R identified by match to protein family HMM PF00571; match to protein family HMM PF01769; magnesium transporter complement(391779..393092) Neorickettsia risticii str. Illinois 8220509 YP_003081661.1 CDS NRI_0441 NC_013009.1 393265 394374 R identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554; phage major capsid protein, HK97 family complement(393265..394374) Neorickettsia risticii str. Illinois 8220524 YP_003081662.1 CDS NRI_0442 NC_013009.1 394551 397268 R identified by match to protein family HMM PF00580; ATP-dependent DNA helicase, UvrD/REP family complement(394551..397268) Neorickettsia risticii str. Illinois 8220510 YP_003081663.1 CDS trmU NC_013009.1 397377 398483 R identified by match to protein family HMM PF03054; match to protein family HMM PF06508; match to protein family HMM TIGR00420; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase complement(397377..398483) Neorickettsia risticii str. Illinois 8220525 YP_003081664.1 CDS NRI_0444 NC_013009.1 398634 398804 D hypothetical protein 398634..398804 Neorickettsia risticii str. Illinois 8220511 YP_003081665.1 CDS dnaQ NC_013009.1 398788 399474 D identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01406; DNA polymerase III, epsilon subunit 398788..399474 Neorickettsia risticii str. Illinois 8220526 YP_003081666.1 CDS NRI_0446 NC_013009.1 399739 401334 D identified by match to protein family HMM PF00557; match to protein family HMM PF01321; metallopeptidase, M24 family 399739..401334 Neorickettsia risticii str. Illinois 8220512 YP_003081667.1 CDS NRI_0447 NC_013009.1 401410 402195 R alpha/beta hydrolase complement(401410..402195) Neorickettsia risticii str. Illinois 8220527 YP_003081668.1 CDS cycM NC_013009.1 402382 402921 R identified by match to protein family HMM PF00034; cytochrome c family protein complement(402382..402921) Neorickettsia risticii str. Illinois 8220513 YP_003081669.1 CDS purN NC_013009.1 403066 403644 R identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639; phosphoribosylglycinamide formyltransferase complement(403066..403644) Neorickettsia risticii str. Illinois 8220528 YP_003081670.1 CDS NRI_0450 NC_013009.1 403704 405224 R identified by match to protein family HMM PF00883; match to protein family HMM PF02789.; cytosol aminopeptidase complement(403704..405224) Neorickettsia risticii str. Illinois 8220514 YP_003081671.1 CDS aspS NC_013009.1 405661 407457 D identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM PF02938; match to protein family HMM TIGR00459; aspartyl-tRNA synthetase 405661..407457 Neorickettsia risticii str. Illinois 8220073 YP_003081672.1 CDS NRI_0453 NC_013009.1 407805 408785 R identified by match to protein family HMM PF08245; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(407805..408785) Neorickettsia risticii str. Illinois 8220515 YP_003081673.1 CDS pstA NC_013009.1 409056 410249 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease 409056..410249 Neorickettsia risticii str. Illinois 8220530 YP_003081674.1 CDS NRI_0455 NC_013009.1 410256 411269 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 410256..411269 Neorickettsia risticii str. Illinois 8220516 YP_003081675.1 CDS NRI_0456 NC_013009.1 411282 411437 D identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411; Twin-arginine translocation protein, TatA/E family 411282..411437 Neorickettsia risticii str. Illinois 8220531 YP_003081676.1 CDS NRI_0457 NC_013009.1 411513 411635 D hypothetical protein 411513..411635 Neorickettsia risticii str. Illinois 8220517 YP_003081677.1 CDS thiG NC_013009.1 411717 412487 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 411717..412487 Neorickettsia risticii str. Illinois 8220532 YP_003081678.1 CDS folP NC_013009.1 412774 413559 R identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase complement(412774..413559) Neorickettsia risticii str. Illinois 8220518 YP_003081679.1 CDS folK NC_013009.1 413804 414364 R identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(413804..414364) Neorickettsia risticii str. Illinois 8220533 YP_003081680.1 CDS metK NC_013009.1 414380 415612 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 414380..415612 Neorickettsia risticii str. Illinois 8220534 YP_003081681.1 CDS NRI_0462 NC_013009.1 415615 415884 R hypothetical protein complement(415615..415884) Neorickettsia risticii str. Illinois 8220535 YP_003081682.1 CDS NRI_0464 NC_013009.1 415906 416085 D hypothetical protein 415906..416085 Neorickettsia risticii str. Illinois 8220536 YP_003081683.1 CDS NRI_0463 NC_013009.1 416038 416346 R identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein complement(416038..416346) Neorickettsia risticii str. Illinois 8220538 YP_003081684.1 CDS dnaX NC_013009.1 416702 417913 R identified by match to protein family HMM PF00004; match to protein family HMM TIGR02397; DNA polymerase III, subunits gamma and tau complement(416702..417913) Neorickettsia risticii str. Illinois 8220537 YP_003081685.1 CDS NRI_0466 NC_013009.1 418102 418800 R identified by match to protein family HMM PF03070; tena/thi-4 family complement(418102..418800) Neorickettsia risticii str. Illinois 8220539 YP_003081686.1 CDS htpG NC_013009.1 419089 420951 D molecular chaperone; heat shock protein 90 419089..420951 Neorickettsia risticii str. Illinois 8220540 YP_003081687.1 CDS NRI_0468 NC_013009.1 421155 422378 D ankyrin repeat protein 421155..422378 Neorickettsia risticii str. Illinois 8220541 YP_003081688.1 CDS NRI_0469 NC_013009.1 422530 426921 D identified by match to protein family HMM PF00023; ankyrin repeat protein 422530..426921 Neorickettsia risticii str. Illinois 8220542 YP_003081689.1 CDS lnt NC_013009.1 426965 428383 R identified by match to protein family HMM PF00795; match to protein family HMM TIGR00546; apolipoprotein N-acyltransferase complement(426965..428383) Neorickettsia risticii str. Illinois 8220543 YP_003081690.1 CDS NRI_0471 NC_013009.1 428380 430842 R hypothetical protein complement(428380..430842) Neorickettsia risticii str. Illinois 8220544 YP_003081691.1 CDS ribD NC_013009.1 431020 432099 D identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD 431020..432099 Neorickettsia risticii str. Illinois 8220545 YP_003081692.1 CDS ligA NC_013009.1 432123 434135 R identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575; DNA ligase, NAD-dependent complement(432123..434135) Neorickettsia risticii str. Illinois 8220546 YP_003081693.1 CDS NRI_0474 NC_013009.1 434150 434410 R dihydroneopterin aldolase complement(434150..434410) Neorickettsia risticii str. Illinois 8220519 YP_003081694.1 CDS carA NC_013009.1 434457 435566 R identified by match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368; carbamoyl-phosphate synthase, small subunit complement(434457..435566) Neorickettsia risticii str. Illinois 8220548 YP_003081695.1 CDS rpmE NC_013009.1 435578 435808 R identified by match to protein family HMM TIGR00105; ribosomal protein L31 complement(435578..435808) Neorickettsia risticii str. Illinois 8220549 YP_003081696.1 CDS NRI_0477 NC_013009.1 435877 436110 R hypothetical protein complement(435877..436110) Neorickettsia risticii str. Illinois 8220547 YP_003081697.1 CDS NRI_0478 NC_013009.1 436298 436864 R identified by match to protein family HMM PF06242; hypothetical protein complement(436298..436864) Neorickettsia risticii str. Illinois 8220550 YP_003081698.1 CDS leuS NC_013009.1 436958 439522 R identified by match to protein family HMM PF00133; match to protein family HMM PF09334; match to protein family HMM TIGR00396; leucyl-tRNA synthetase complement(436958..439522) Neorickettsia risticii str. Illinois 8220551 YP_003081699.1 CDS NRI_0480 NC_013009.1 439620 440081 D hypothetical protein 439620..440081 Neorickettsia risticii str. Illinois 8220552 YP_003081700.1 CDS NRI_0481 NC_013009.1 440162 440779 R identified by match to protein family HMM PF01381; match to protein family HMM PF07022; DNA-binding protein complement(440162..440779) Neorickettsia risticii str. Illinois 8220553 YP_003081701.1 CDS NRI_0482 NC_013009.1 441008 441709 D identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191; heme exporter protein, CcmC family 441008..441709 Neorickettsia risticii str. Illinois 8220554 YP_003081702.1 CDS NRI_0483 NC_013009.1 441690 442568 D identified by match to protein family HMM PF00185; match to protein family HMM PF02729; aspartate carbamoyltransferase 441690..442568 Neorickettsia risticii str. Illinois 8220555 YP_003081703.1 CDS NRI_0484 NC_013009.1 443081 444679 D hypothetical protein 443081..444679 Neorickettsia risticii str. Illinois 8220556 YP_003081704.1 CDS pleD NC_013009.1 445016 446389 R involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP; response regulator PleD complement(445016..446389) Neorickettsia risticii str. Illinois 8220557 YP_003081705.1 CDS NRI_0486 NC_013009.1 446441 446719 R hypothetical protein complement(446441..446719) Neorickettsia risticii str. Illinois 8220558 YP_003081706.1 CDS NRI_0487 NC_013009.1 446724 451484 R identified by match to protein family HMM PF05088; NAD-glutamate dehydrogenase family protein complement(446724..451484) Neorickettsia risticii str. Illinois 8220559 YP_003081707.1 CDS NRI_0489 NC_013009.1 451469 451606 D hypothetical protein 451469..451606 Neorickettsia risticii str. Illinois 8220560 YP_003081708.1 CDS NRI_0488 NC_013009.1 451592 451723 R hypothetical protein complement(451592..451723) Neorickettsia risticii str. Illinois 8220562 YP_003081709.1 CDS NRI_0490 NC_013009.1 451712 451987 D glutamyl-tRNA 451712..451987 Neorickettsia risticii str. Illinois 8220561 YP_003081710.1 CDS NRI_0491 NC_013009.1 452065 452991 R hypothetical protein complement(452065..452991) Neorickettsia risticii str. Illinois 8220563 YP_003081711.1 CDS NRI_0492 NC_013009.1 452991 453770 R glutamyl-tRNA synthetase 1 complement(452991..453770) Neorickettsia risticii str. Illinois 8220564 YP_003081712.1 CDS NRI_0493 NC_013009.1 453833 454291 R identified by match to protein family HMM PF00749; glutamyl-tRNA synthetase 1 complement(453833..454291) Neorickettsia risticii str. Illinois 8220565 YP_003081713.1 CDS NRI_0494 NC_013009.1 454288 454692 R hypothetical protein complement(454288..454692) Neorickettsia risticii str. Illinois 8220566 YP_003081714.1 CDS nrdF NC_013009.1 454757 455617 R B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta complement(454757..455617) Neorickettsia risticii str. Illinois 8220567 YP_003081715.1 CDS NRI_0496 NC_013009.1 455963 457576 D identified by match to protein family HMM PF00013; match to protein family HMM PF08529; match to protein family HMM TIGR01953; match to protein family HMM TIGR01954; N utilization substance protein A 455963..457576 Neorickettsia risticii str. Illinois 8220568 YP_003081716.1 CDS infB NC_013009.1 457586 459910 D identified by match to protein family HMM PF00009; match to protein family HMM PF01926; match to protein family HMM PF03144; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR00487; translation initiation factor IF-2 457586..459910 Neorickettsia risticii str. Illinois 8220569 YP_003081717.1 CDS NRI_0498 NC_013009.1 459919 460212 D ribosome-binding factor A 459919..460212 Neorickettsia risticii str. Illinois 8220570 YP_003081718.1 CDS NRI_0499 NC_013009.1 460184 462208 D hypothetical protein 460184..462208 Neorickettsia risticii str. Illinois 8220571 YP_003081719.1 CDS NRI_0500 NC_013009.1 462369 462524 D hypothetical protein 462369..462524 Neorickettsia risticii str. Illinois 8220572 YP_003081720.1 CDS NRI_0501 NC_013009.1 462625 462738 R hypothetical protein complement(462625..462738) Neorickettsia risticii str. Illinois 8220573 YP_003081721.1 CDS guaB NC_013009.1 462720 464165 D identified by match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01302; inosine-5'-monophosphate dehydrogenase 462720..464165 Neorickettsia risticii str. Illinois 8220574 YP_003081722.1 CDS NRI_0503 NC_013009.1 464411 466891 D hypothetical protein 464411..466891 Neorickettsia risticii str. Illinois 8220575 YP_003081723.1 CDS NRI_0504 NC_013009.1 466896 467375 R identified by match to protein family HMM PF02470; mce-related protein complement(466896..467375) Neorickettsia risticii str. Illinois 8220576 YP_003081724.1 CDS NRI_0505 NC_013009.1 467356 467619 R hypothetical protein complement(467356..467619) Neorickettsia risticii str. Illinois 8220577 YP_003081725.1 CDS NRI_0506 NC_013009.1 467629 468279 R identified by match to protein family HMM PF01612; ribonuclease D complement(467629..468279) Neorickettsia risticii str. Illinois 8220578 YP_003081726.1 CDS recA NC_013009.1 468288 469271 R identified by match to protein family HMM PF00154; match to protein family HMM TIGR02012; protein RecA complement(468288..469271) Neorickettsia risticii str. Illinois 8220579 YP_003081727.1 CDS pleC-2 NC_013009.1 469478 471037 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase PleC 469478..471037 Neorickettsia risticii str. Illinois 8220580 YP_003081728.1 CDS NRI_0510 NC_013009.1 471335 471499 R hypothetical protein complement(471335..471499) Neorickettsia risticii str. Illinois 8220085 YP_003081729.1 CDS sdhB NC_013009.1 471486 472250 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(471486..472250) Neorickettsia risticii str. Illinois 8220582 YP_003081730.1 CDS dnaJ NC_013009.1 472531 473670 D identified by match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; match to protein family HMM TIGR02349; chaperone protein DnaJ 472531..473670 Neorickettsia risticii str. Illinois 8220583 YP_003081731.1 CDS NRI_0513 NC_013009.1 473742 475184 R identified by match to protein family HMM PF01926; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR00650; GTP-binding protein EngA complement(473742..475184) Neorickettsia risticii str. Illinois 8220584 YP_003081732.1 CDS ileS NC_013009.1 475827 478964 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 475827..478964 Neorickettsia risticii str. Illinois 8220585 YP_003081733.1 CDS pyrE NC_013009.1 478967 479590 D identified by match to protein family HMM PF00156; match to protein family HMM TIGR01367; orotate phosphoribosyltransferase 478967..479590 Neorickettsia risticii str. Illinois 8220586 YP_003081734.1 CDS NRI_0516 NC_013009.1 479752 480780 D hypothetical protein 479752..480780 Neorickettsia risticii str. Illinois 8220587 YP_003081735.1 CDS ffh NC_013009.1 480864 482213 R identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein complement(480864..482213) Neorickettsia risticii str. Illinois 8220588 YP_003081736.1 CDS NRI_0518 NC_013009.1 482220 483608 R hypothetical protein complement(482220..483608) Neorickettsia risticii str. Illinois 8220589 YP_003081737.1 CDS NRI_0519 NC_013009.1 483678 484343 R identified by match to protein family HMM PF06271; RDD family protein complement(483678..484343) Neorickettsia risticii str. Illinois 8220590 YP_003081738.1 CDS NRI_0520 NC_013009.1 484349 485359 R identified by match to protein family HMM PF08241; match to protein family HMM PF08242; methyltransferase domain family complement(484349..485359) Neorickettsia risticii str. Illinois 8220591 YP_003081739.1 CDS fabK NC_013009.1 485531 486511 R identified by match to protein family HMM PF03060; enoyl-ACP reductase II complement(485531..486511) Neorickettsia risticii str. Illinois 8220592 YP_003081740.1 CDS ftsY NC_013009.1 486697 487626 D identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY 486697..487626 Neorickettsia risticii str. Illinois 8220593 YP_003081741.1 CDS rrmJ NC_013009.1 487749 488309 R identified by match to protein family HMM PF01728; ribosomal RNA large subunit methyltransferase J complement(487749..488309) Neorickettsia risticii str. Illinois 8220594 YP_003081742.1 CDS tmk NC_013009.1 488362 488961 R identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041; thymidylate kinase complement(488362..488961) Neorickettsia risticii str. Illinois 8220595 YP_003081743.1 CDS sucB NC_013009.1 489171 490454 R identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01347; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex complement(489171..490454) Neorickettsia risticii str. Illinois 8220596 YP_003081744.1 CDS NRI_0526 NC_013009.1 490666 492039 D identified by match to protein family HMM PF01523; PmbA protein 490666..492039 Neorickettsia risticii str. Illinois 8220597 YP_003081745.1 CDS NRI_0527 NC_013009.1 492357 492917 D identified by match to protein family HMM PF02630; major surface protein 492357..492917 Neorickettsia risticii str. Illinois 8220598 YP_003081746.1 CDS dnaB NC_013009.1 493111 494595 D identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665. Overlaps with tRNA-Pro-1 gene (NRI_0528); replicative DNA helicase 493111..494595 Neorickettsia risticii str. Illinois 8220084 YP_003081747.1 CDS NRI_0530 NC_013009.1 494726 495244 R identified by match to protein family HMM PF04586; match to protein family HMM TIGR01543; phage prohead protease, HK97 family complement(494726..495244) Neorickettsia risticii str. Illinois 8220600 YP_003081748.1 CDS NRI_0531 NC_013009.1 495533 496450 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase C complement(495533..496450) Neorickettsia risticii str. Illinois 8220601 YP_003081749.1 CDS trxB NC_013009.1 496576 497520 R identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase complement(496576..497520) Neorickettsia risticii str. Illinois 8220602 YP_003081750.1 CDS NRI_0533 NC_013009.1 497529 498170 R identified by match to protein family HMM PF00578; match to protein family HMM PF08534; antioxidant, AhpC/Tsa family complement(497529..498170) Neorickettsia risticii str. Illinois 8220603 YP_003081751.1 CDS NRI_0534 NC_013009.1 498285 498737 R identified by match to protein family HMM PF00334; nucleoside diphosphate kinase complement(498285..498737) Neorickettsia risticii str. Illinois 8220604 YP_003081752.1 CDS NRI_0535 NC_013009.1 499115 500668 D identified by match to protein family HMM PF03023; membrane protein, MviN family 499115..500668 Neorickettsia risticii str. Illinois 8220605 YP_003081753.1 CDS NRI_0536 NC_013009.1 500882 502309 D identified by match to protein family HMM PF00361; NADH-ubiquinone/plastoquinone oxidoreductase family protein 500882..502309 Neorickettsia risticii str. Illinois 8220606 YP_003081754.1 CDS NRI_0537 NC_013009.1 502418 503044 D hypothetical protein 502418..503044 Neorickettsia risticii str. Illinois 8220607 YP_003081755.1 CDS NRI_0538 NC_013009.1 503057 503638 R hypothetical protein complement(503057..503638) Neorickettsia risticii str. Illinois 8220608 YP_003081756.1 CDS nuoD NC_013009.1 503635 504801 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D complement(503635..504801) Neorickettsia risticii str. Illinois 8220609 YP_003081757.1 CDS NRI_0541 NC_013009.1 504970 505092 R hypothetical protein complement(504970..505092) Neorickettsia risticii str. Illinois 8220066 YP_003081758.1 CDS NRI_0542 NC_013009.1 505093 505230 R hypothetical protein complement(505093..505230) Neorickettsia risticii str. Illinois 8220611 YP_003081759.1 CDS NRI_0543 NC_013009.1 505332 505484 R hypothetical protein complement(505332..505484) Neorickettsia risticii str. Illinois 8220612 YP_003081760.1 CDS serS NC_013009.1 505556 506803 R identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414; seryl-tRNA synthetase complement(505556..506803) Neorickettsia risticii str. Illinois 8220613 YP_003081761.1 CDS NRI_0545 NC_013009.1 507033 507950 R identified by match to protein family HMM PF01715; tRNA delta complement(507033..507950) Neorickettsia risticii str. Illinois 8220614 YP_003081762.1 CDS NRI_0546 NC_013009.1 507964 508272 R hypothetical protein complement(507964..508272) Neorickettsia risticii str. Illinois 8220615 YP_003081763.1 CDS NRI_0547 NC_013009.1 508548 508712 R hypothetical protein complement(508548..508712) Neorickettsia risticii str. Illinois 8220616 YP_003081764.1 CDS NRI_0549 NC_013009.1 508951 510528 D identified by match to protein family HMM PF01578; cytochrome c-type biogenesis protein, CcmF/CycK/CcsA family 508951..510528 Neorickettsia risticii str. Illinois 8220617 YP_003081765.1 CDS NRI_0548 NC_013009.1 510525 511517 R hypothetical protein complement(510525..511517) Neorickettsia risticii str. Illinois 8220619 YP_003081766.1 CDS NRI_0550 NC_013009.1 512250 512831 D identified by match to protein family HMM PF01330; holliday junction DNA helicase RuvA 512250..512831 Neorickettsia risticii str. Illinois 8220618 YP_003081767.1 CDS ruvB NC_013009.1 513143 514138 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 513143..514138 Neorickettsia risticii str. Illinois 8220632 YP_003081768.1 CDS NRI_0551 NC_013009.1 514121 514333 R hypothetical protein complement(514121..514333) Neorickettsia risticii str. Illinois 8220634 YP_003081769.1 CDS sucA NC_013009.1 514378 517086 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component complement(514378..517086) Neorickettsia risticii str. Illinois 8220633 YP_003081770.1 CDS NRI_0554 NC_013009.1 517286 517873 R identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein complement(517286..517873) Neorickettsia risticii str. Illinois 8220635 YP_003081771.1 CDS NRI_0555 NC_013009.1 517870 518664 R metallo-beta-lactamase complement(517870..518664) Neorickettsia risticii str. Illinois 8220636 YP_003081772.1 CDS NRI_0556 NC_013009.1 518661 518864 R identified by match to protein family HMM PF04384; hypothetical protein complement(518661..518864) Neorickettsia risticii str. Illinois 8220637 YP_003081773.1 CDS NRI_0557 NC_013009.1 518909 519112 R hypothetical protein complement(518909..519112) Neorickettsia risticii str. Illinois 8220638 YP_003081774.1 CDS rpsD NC_013009.1 519198 519815 R identified by match to protein family HMM PF01479; match to protein family HMM TIGR01017; 30S ribosomal protein S4 complement(519198..519815) Neorickettsia risticii str. Illinois 8220078 YP_003081775.1 CDS NRI_0560 NC_013009.1 520172 520708 D identified by match to protein family HMM PF08478; cell division protein 520172..520708 Neorickettsia risticii str. Illinois 8220640 YP_003081776.1 CDS NRI_0562 NC_013009.1 520836 520997 D hypothetical protein 520836..520997 Neorickettsia risticii str. Illinois 8220641 YP_003081777.1 CDS NRI_0561 NC_013009.1 520970 521512 R identified by match to protein family HMM PF01227; GTP cyclohydrolase I complement(520970..521512) Neorickettsia risticii str. Illinois 8220643 YP_003081778.1 CDS atpG NC_013009.1 521496 522230 R identified by match to protein family HMM PF00231; ATP synthase F1 subunit gamma complement(521496..522230) Neorickettsia risticii str. Illinois 8220642 YP_003081779.1 CDS NRI_0564 NC_013009.1 522362 522589 R hypothetical protein complement(522362..522589) Neorickettsia risticii str. Illinois 8220644 YP_003081780.1 CDS NRI_0565 NC_013009.1 522775 523602 R identified by match to protein family HMM PF01565; match to protein family HMM PF02873; UDP-N-acetylenolpyruvoylglucosamine reductase complement(522775..523602) Neorickettsia risticii str. Illinois 8220645 YP_003081781.1 CDS NRI_0566 NC_013009.1 523750 523863 R hypothetical protein complement(523750..523863) Neorickettsia risticii str. Illinois 8220620 YP_003081782.1 CDS NRI_0567 NC_013009.1 523869 525272 D hypothetical protein 523869..525272 Neorickettsia risticii str. Illinois 8220646 YP_003081783.1 CDS glpX NC_013009.1 525393 526331 R type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II complement(525393..526331) Neorickettsia risticii str. Illinois 8220647 YP_003081784.1 CDS NRI_0569 NC_013009.1 526544 526666 R hypothetical protein complement(526544..526666) Neorickettsia risticii str. Illinois 8220648 YP_003081785.1 CDS topA NC_013009.1 526677 529160 R identified by match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01051; DNA topoisomerase I complement(526677..529160) Neorickettsia risticii str. Illinois 8220649 YP_003081786.1 CDS NRI_0571 NC_013009.1 529417 530712 R hypothetical protein complement(529417..530712) Neorickettsia risticii str. Illinois 8220650 YP_003081787.1 CDS NRI_0572 NC_013009.1 531084 531647 R identified by match to protein family HMM PF01596; O-methyltransferase family protein complement(531084..531647) Neorickettsia risticii str. Illinois 8220651 YP_003081788.1 CDS acnA NC_013009.1 532128 534845 D identified by match to protein family HMM PF00330; match to protein family HMM PF00694; match to protein family HMM TIGR01341; aconitate hydratase 1 532128..534845 Neorickettsia risticii str. Illinois 8220652 YP_003081789.1 CDS NRI_0574 NC_013009.1 535015 535986 R identified by match to protein family HMM PF02636; ATP synthase subunit beta complement(535015..535986) Neorickettsia risticii str. Illinois 8220653 YP_003081790.1 CDS valS NC_013009.1 536249 538885 R identified by match to protein family HMM PF00133; match to protein family HMM PF08264; match to protein family HMM PF09334; valyl-tRNA synthetase complement(536249..538885) Neorickettsia risticii str. Illinois 8220654 YP_003081791.1 CDS prfB NC_013009.1 539274 540278 D identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020; peptide chain release factor 2 539274..540278 Neorickettsia risticii str. Illinois 8220655 YP_003081792.1 CDS NRI_0578 NC_013009.1 540502 541893 D hypothetical protein 540502..541893 Neorickettsia risticii str. Illinois 8220656 YP_003081793.1 CDS NRI_0577 NC_013009.1 541874 541990 R hypothetical protein complement(541874..541990) Neorickettsia risticii str. Illinois 8220658 YP_003081794.1 CDS NRI_0579 NC_013009.1 542583 545342 D hypothetical protein 542583..545342 Neorickettsia risticii str. Illinois 8220657 YP_003081795.1 CDS NRI_0580 NC_013009.1 546072 546878 D hypothetical protein 546072..546878 Neorickettsia risticii str. Illinois 8220659 YP_003081796.1 CDS NRI_0581 NC_013009.1 547303 549258 D identified by match to protein family HMM PF01119; match to protein family HMM PF02518; match to protein family HMM PF08676; match to protein family HMM TIGR00585; DNA mismatch repair protein, MutL/HexB family 547303..549258 Neorickettsia risticii str. Illinois 8220660 YP_003081797.1 CDS NRI_0582 NC_013009.1 549233 549400 D hypothetical protein 549233..549400 Neorickettsia risticii str. Illinois 8220621 YP_003081798.1 CDS bioB NC_013009.1 549509 550486 R identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433; biotin synthase complement(549509..550486) Neorickettsia risticii str. Illinois 8220661 YP_003081799.1 CDS NRI_0584 NC_013009.1 550927 551040 R hypothetical protein complement(550927..551040) Neorickettsia risticii str. Illinois 8220662 YP_003081800.1 CDS bioF NC_013009.1 551069 552250 D identified by match to protein family HMM PF00155; 8-amino-7-oxononanoate synthase 551069..552250 Neorickettsia risticii str. Illinois 8220663 YP_003081801.1 CDS NRI_0586 NC_013009.1 552247 552894 D hypothetical protein 552247..552894 Neorickettsia risticii str. Illinois 8220664 YP_003081802.1 CDS bioC NC_013009.1 553006 553758 R identified by match to protein family HMM PF08241; match to protein family HMM TIGR02072; biotin biosynthesis protein BioC complement(553006..553758) Neorickettsia risticii str. Illinois 8220665 YP_003081803.1 CDS bioD NC_013009.1 554262 554987 D identified by match to protein family HMM TIGR00347; dethiobiotin synthase 554262..554987 Neorickettsia risticii str. Illinois 8220666 YP_003081804.1 CDS bioA NC_013009.1 555213 556556 D identified by match to protein family HMM PF00202; match to protein family HMM TIGR00508; adenosylmethionine-8-amino-7-oxononanoate transaminase 555213..556556 Neorickettsia risticii str. Illinois 8220667 YP_003081805.1 CDS NRI_0591 NC_013009.1 556972 557202 D hypothetical protein 556972..557202 Neorickettsia risticii str. Illinois 8220093 YP_003081806.1 CDS coxB NC_013009.1 557424 558191 D identified by match to protein family HMM PF00116; match to protein family HMM PF02790; match to protein family HMM TIGR02866; cytochrome c oxidase subunit II 557424..558191 Neorickettsia risticii str. Illinois 8220669 YP_003081807.1 CDS ctaD NC_013009.1 558220 559779 D identified by match to protein family HMM PF00115; match to protein family HMM TIGR02891; cytochrome c oxidase subunit I 558220..559779 Neorickettsia risticii str. Illinois 8220670 YP_003081808.1 CDS cyoE NC_013009.1 559825 560697 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 559825..560697 Neorickettsia risticii str. Illinois 8220671 YP_003081809.1 CDS petA NC_013009.1 560712 561233 D identified by match to protein family HMM PF00355; match to protein family HMM TIGR01409; match to protein family HMM TIGR01416; ubiquinol-cytochrome c reductase, iron-sulfur subunit 560712..561233 Neorickettsia risticii str. Illinois 8220672 YP_003081810.1 CDS NRI_0596 NC_013009.1 561226 562458 D identified by match to protein family HMM PF00032; match to protein family HMM PF00033; cytochrome B 561226..562458 Neorickettsia risticii str. Illinois 8220673 YP_003081811.1 CDS petC NC_013009.1 562470 563240 D identified by match to protein family HMM PF02167; ubiquinol-cytochrome c reductase, cytochrome c1 562470..563240 Neorickettsia risticii str. Illinois 8220674 YP_003081812.1 CDS secD NC_013009.1 563297 564805 D identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR01129; protein-export membrane protein SecD 563297..564805 Neorickettsia risticii str. Illinois 8220622 YP_003081813.1 CDS ubiG NC_013009.1 565089 565781 R Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase complement(565089..565781) Neorickettsia risticii str. Illinois 8220675 YP_003081814.1 CDS NRI_0600 NC_013009.1 565884 566003 R hypothetical protein complement(565884..566003) Neorickettsia risticii str. Illinois 8220623 YP_003081815.1 CDS NRI_0602 NC_013009.1 566173 566310 D hypothetical protein 566173..566310 Neorickettsia risticii str. Illinois 8220062 YP_003081816.1 CDS NRI_0603 NC_013009.1 566348 567283 R identified by match to protein family HMM PF08541; match to protein family HMM PF08545; match to protein family HMM TIGR00747; 3-oxoacyl-ACP synthase III complement(566348..567283) Neorickettsia risticii str. Illinois 8220624 YP_003081817.1 CDS plsX NC_013009.1 567700 568752 R identified by match to protein family HMM PF02504; match to protein family HMM TIGR00182; fatty acid/phospholipid synthesis protein PlsX complement(567700..568752) Neorickettsia risticii str. Illinois 8220677 YP_003081818.1 CDS rpmF NC_013009.1 568778 568969 R identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; ribosomal protein L32 complement(568778..568969) Neorickettsia risticii str. Illinois 8220625 YP_003081819.1 CDS NRI_0606 NC_013009.1 569213 571843 R hypothetical protein complement(569213..571843) Neorickettsia risticii str. Illinois 8220678 YP_003081820.1 CDS NRI_0607 NC_013009.1 572125 572643 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E complement(572125..572643) Neorickettsia risticii str. Illinois 8220626 YP_003081821.1 CDS NRI_0608 NC_013009.1 572655 574031 R identified by match to protein family HMM PF03109; 2-polyprenylphenol 6-hydroxylase complement(572655..574031) Neorickettsia risticii str. Illinois 8220679 YP_003081822.1 CDS NRI_0609 NC_013009.1 574132 574311 R hypothetical protein complement(574132..574311) Neorickettsia risticii str. Illinois 8220627 YP_003081823.1 CDS NRI_0610 NC_013009.1 574292 574870 D hypothetical protein 574292..574870 Neorickettsia risticii str. Illinois 8220680 YP_003081824.1 CDS NRI_0611 NC_013009.1 574942 575058 D hypothetical protein 574942..575058 Neorickettsia risticii str. Illinois 8220628 YP_003081825.1 CDS NRI_0612 NC_013009.1 575191 575487 D identified by match to protein family HMM PF00216; DNA-binding protein HU 575191..575487 Neorickettsia risticii str. Illinois 8220681 YP_003081826.1 CDS NRI_0613 NC_013009.1 575528 576253 D identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 575528..576253 Neorickettsia risticii str. Illinois 8220629 YP_003081827.1 CDS groL NC_013009.1 576441 578087 R identified by match to protein family HMM PF00118; match to protein family HMM TIGR02348; chaperonin GroL complement(576441..578087) Neorickettsia risticii str. Illinois 8220682 YP_003081828.1 CDS groS NC_013009.1 578087 578383 R identified by match to protein family HMM PF00166; chaperonin GroS complement(578087..578383) Neorickettsia risticii str. Illinois 8220630 YP_003081829.1 CDS NRI_0616 NC_013009.1 578530 579474 R hypothetical protein complement(578530..579474) Neorickettsia risticii str. Illinois 8220683 YP_003081830.1 CDS NRI_0617 NC_013009.1 579474 581258 R Matched to COG0760: Parvulin-like peptidyl-prolyl isomerase; Completely overlapped with NRI_0618; rotamase complement(579474..581258) Neorickettsia risticii str. Illinois 8220631 YP_003081831.1 CDS NRI_0618 NC_013009.1 581071 581268 D hypothetical protein 581071..581268 Neorickettsia risticii str. Illinois 8220684 YP_003081832.1 CDS pcnB NC_013009.1 581243 582421 D identified by match to protein family HMM PF01743; poly A polymerase family protein 581243..582421 Neorickettsia risticii str. Illinois 8220694 YP_003081833.1 CDS NRI_0620 NC_013009.1 582645 583538 R hypothetical protein complement(582645..583538) Neorickettsia risticii str. Illinois 8220685 YP_003081834.1 CDS NRI_0621 NC_013009.1 583646 583810 R hypothetical protein complement(583646..583810) Neorickettsia risticii str. Illinois 8220695 YP_003081835.1 CDS ribB NC_013009.1 583835 584467 R identified by match to protein family HMM PF00926; match to protein family HMM TIGR00506; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(583835..584467) Neorickettsia risticii str. Illinois 8220686 YP_003081836.1 CDS NRI_0623 NC_013009.1 584766 584882 R hypothetical protein complement(584766..584882) Neorickettsia risticii str. Illinois 8220696 YP_003081837.1 CDS NRI_0624 NC_013009.1 585171 585302 D hypothetical protein 585171..585302 Neorickettsia risticii str. Illinois 8220687 YP_003081838.1 CDS NRI_0625 NC_013009.1 585429 585632 R hypothetical protein complement(585429..585632) Neorickettsia risticii str. Illinois 8220697 YP_003081839.1 CDS NRI_0626 NC_013009.1 585634 587169 D identified by match to protein family HMM PF01580; cell division protein FtsK 585634..587169 Neorickettsia risticii str. Illinois 8220688 YP_003081840.1 CDS NRI_0627 NC_013009.1 587347 588777 D hypothetical protein 587347..588777 Neorickettsia risticii str. Illinois 8220698 YP_003081841.1 CDS NRI_0628 NC_013009.1 588818 589564 D hypothetical protein 588818..589564 Neorickettsia risticii str. Illinois 8220689 YP_003081842.1 CDS NRI_0629 NC_013009.1 589618 590436 D hypothetical protein 589618..590436 Neorickettsia risticii str. Illinois 8220699 YP_003081843.1 CDS NRI_0630 NC_013009.1 590488 591324 D hypothetical protein 590488..591324 Neorickettsia risticii str. Illinois 8220690 YP_003081844.1 CDS NRI_0631 NC_013009.1 591376 592107 D hypothetical protein 591376..592107 Neorickettsia risticii str. Illinois 8220700 YP_003081845.1 CDS NRI_0632 NC_013009.1 592429 592653 D hypothetical protein 592429..592653 Neorickettsia risticii str. Illinois 8220691 YP_003081846.1 CDS NRI_0633 NC_013009.1 592954 593370 D hypothetical protein 592954..593370 Neorickettsia risticii str. Illinois 8220701 YP_003081847.1 CDS NRI_0635 NC_013009.1 593663 593791 D hypothetical protein 593663..593791 Neorickettsia risticii str. Illinois 8220692 YP_003081848.1 CDS NRI_0634 NC_013009.1 593773 594537 R identified by match to protein family HMM PF00583; acetyltransferase, gnat family complement(593773..594537) Neorickettsia risticii str. Illinois 8220693 YP_003081849.1 CDS NRI_0636 NC_013009.1 594566 595003 R hypothetical protein complement(594566..595003) Neorickettsia risticii str. Illinois 8220702 YP_003081850.1 CDS NRI_0637 NC_013009.1 595231 595356 R hypothetical protein complement(595231..595356) Neorickettsia risticii str. Illinois 8220703 YP_003081851.1 CDS NRI_0638 NC_013009.1 595473 599192 R identified by match to protein family HMM PF00970; oxidoreductase, FAD-binding domain protein complement(595473..599192) Neorickettsia risticii str. Illinois 8220709 YP_003081852.1 CDS NRI_0639 NC_013009.1 599214 599348 D hypothetical protein 599214..599348 Neorickettsia risticii str. Illinois 8220704 YP_003081853.1 CDS NRI_0640 NC_013009.1 599466 599921 R identified by match to protein family HMM PF07977; (3R)-hydroxymyristoyl-ACP dehydratase complement(599466..599921) Neorickettsia risticii str. Illinois 8220710 YP_003081854.1 CDS NRI_0641 NC_013009.1 599928 600548 R identified by match to protein family HMM PF03938; hypothetical protein complement(599928..600548) Neorickettsia risticii str. Illinois 8220705 YP_003081855.1 CDS NRI_0642 NC_013009.1 600744 601484 R identified by match to protein family HMM PF00106; match to protein family HMM PF08659; 3-oxoacyl-ACP reductase complement(600744..601484) Neorickettsia risticii str. Illinois 8220711 YP_003081856.1 CDS NRI_0643 NC_013009.1 601456 601713 D hypothetical protein 601456..601713 Neorickettsia risticii str. Illinois 8220706 YP_003081857.1 CDS rnhA NC_013009.1 601918 602373 R identified by match to protein family HMM PF00075; RNase H complement(601918..602373) Neorickettsia risticii str. Illinois 8220712 YP_003081858.1 CDS NRI_0645 NC_013009.1 602790 603569 R identified by match to protein family HMM PF08241; match to protein family HMM PF08242; methyltransferase domain family complement(602790..603569) Neorickettsia risticii str. Illinois 8220707 YP_003081859.1 CDS greA NC_013009.1 603572 604045 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(603572..604045) Neorickettsia risticii str. Illinois 8220713 YP_003081860.1 CDS NRI_0647 NC_013009.1 604160 604309 R hypothetical protein complement(604160..604309) Neorickettsia risticii str. Illinois 8220708 YP_003081861.1 CDS lpdA-2 NC_013009.1 604337 605722 D identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01350; dihydrolipoyl dehydrogenase 604337..605722 Neorickettsia risticii str. Illinois 8220714 YP_003081862.1 CDS NRI_0649 NC_013009.1 605756 606400 R hypothetical protein complement(605756..606400) Neorickettsia risticii str. Illinois 8220724 YP_003081863.1 CDS typA NC_013009.1 606403 608100 R identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR01394; GTP-binding protein TypA/BipA complement(606403..608100) Neorickettsia risticii str. Illinois 8220715 YP_003081864.1 CDS NRI_0651 NC_013009.1 608515 610965 D identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593; DNA polymerase I 608515..610965 Neorickettsia risticii str. Illinois 8220725 YP_003081865.1 CDS NRI_0652 NC_013009.1 611065 611886 R identified by match to protein family HMM PF00510; cytochrome c oxidase subunit III complement(611065..611886) Neorickettsia risticii str. Illinois 8220716 YP_003081866.1 CDS NRI_0653 NC_013009.1 611922 614846 R identified by match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04998; match to protein family HMM PF05000; bifunctional DNA-directed RNA polymerase, beta and beta' chain complement(611922..614846) Neorickettsia risticii str. Illinois 8220726 YP_003081867.1 CDS NRI_0654 NC_013009.1 614836 616050 R identified by match to protein family HMM PF04997; DNA-directed RNA polymerase beta' chain complement(614836..616050) Neorickettsia risticii str. Illinois 8220717 YP_003081868.1 CDS rpoB NC_013009.1 616108 620184 R identified by match to protein family HMM PF00562; match to protein family HMM PF04560; match to protein family HMM PF04561; match to protein family HMM PF04563; match to protein family HMM PF04565; match to protein family HMM TIGR02013; DNA-directed RNA polymerase, beta subunit complement(616108..620184) Neorickettsia risticii str. Illinois 8220727 YP_003081869.1 CDS NRI_0656 NC_013009.1 620221 620682 R ribosomal protein L7/L12 complement(620221..620682) Neorickettsia risticii str. Illinois 8220718 YP_003081870.1 CDS NRI_0657 NC_013009.1 620676 621200 R identified by match to protein family HMM PF00466; 50S ribosomal protein L10 complement(620676..621200) Neorickettsia risticii str. Illinois 8220728 YP_003081871.1 CDS NRI_0658 NC_013009.1 621212 621841 R identified by match to protein family HMM PF00687; 50S ribosomal protein L1 complement(621212..621841) Neorickettsia risticii str. Illinois 8220719 YP_003081872.1 CDS NRI_0659 NC_013009.1 621843 622265 R identified by match to protein family HMM PF03946; 50S ribosomal protein L11 complement(621843..622265) Neorickettsia risticii str. Illinois 8220729 YP_003081873.1 CDS NRI_0660 NC_013009.1 622294 622815 R identified by match to protein family HMM PF02357; transcription termination/antitermination factor NusG complement(622294..622815) Neorickettsia risticii str. Illinois 8220720 YP_003081874.1 CDS NRI_0661 NC_013009.1 622829 622975 R hypothetical protein complement(622829..622975) Neorickettsia risticii str. Illinois 8220730 YP_003081875.1 CDS tuf NC_013009.1 623095 624387 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(623095..624387) Neorickettsia risticii str. Illinois 8220090 YP_003081876.1 CDS fusA NC_013009.1 624417 626495 R identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231; match to protein family HMM TIGR00484; translation elongation factor G complement(624417..626495) Neorickettsia risticii str. Illinois 8220731 YP_003081877.1 CDS rpsG NC_013009.1 626504 627031 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(626504..627031) Neorickettsia risticii str. Illinois 8220722 YP_003081878.1 CDS rpsL NC_013009.1 627043 627411 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(627043..627411) Neorickettsia risticii str. Illinois 8220732 YP_003081879.1 CDS NRI_0667 NC_013009.1 627478 629505 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; ATP-dependent DNA helicase RecG complement(627478..629505) Neorickettsia risticii str. Illinois 8220723 YP_003081880.1 CDS NRI_0668 NC_013009.1 629674 631089 D identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972; NADH-quinone oxidoreductase chain M 629674..631089 Neorickettsia risticii str. Illinois 8220733 YP_003081881.1 CDS NRI_0669 NC_013009.1 631086 632462 D identified by match to protein family HMM PF00361; NADH dehydrogenase I subunit N 631086..632462 Neorickettsia risticii str. Illinois 8220737 YP_003081882.1 CDS NRI_0670 NC_013009.1 632689 633369 D identified by match to protein family HMM TIGR00121; biotin-[acetyl-CoA-carboxylase] ligase 632689..633369 Neorickettsia risticii str. Illinois 8220734 YP_003081883.1 CDS ispA NC_013009.1 633546 634316 D identified by match to protein family HMM PF00348; geranyltranstransferase 633546..634316 Neorickettsia risticii str. Illinois 8220738 YP_003081885.1 CDS glnA NC_013009.1 634839 635657 R identified by match to protein family HMM PF00120; glutamine synthetase catalytic subunit complement(634839..635657) Neorickettsia risticii str. Illinois 8220089 YP_003081886.1 CDS NRI_0675 NC_013009.1 635686 635817 R hypothetical protein complement(635686..635817) Neorickettsia risticii str. Illinois 8220736 YP_003081887.1 CDS NRI_0676 NC_013009.1 635824 636576 D identified by match to protein family HMM PF02405; ABC transporter permease 635824..636576 Neorickettsia risticii str. Illinois 8220739 YP_003081888.1 CDS NRI_0677 NC_013009.1 636566 637294 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 636566..637294 Neorickettsia risticii str. Illinois 8220750 YP_003081889.1 CDS NRI_0678 NC_013009.1 637287 638204 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 637287..638204 Neorickettsia risticii str. Illinois 8220751 YP_003081890.1 CDS NRI_0679 NC_013009.1 638357 638773 R identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein complement(638357..638773) Neorickettsia risticii str. Illinois 8220752 YP_003081891.1 CDS rnhB NC_013009.1 638935 639522 D identified by match to protein family HMM PF01351; ribonuclease HII 638935..639522 Neorickettsia risticii str. Illinois 8220753 YP_003081892.1 CDS NRI_0681 NC_013009.1 639713 640180 D hypothetical protein 639713..640180 Neorickettsia risticii str. Illinois 8220754 YP_003081893.1 CDS tkt NC_013009.1 640367 642628 D identified by match to protein family HMM PF00456; match to protein family HMM PF02779; transketolase 640367..642628 Neorickettsia risticii str. Illinois 8220755 YP_003081894.1 CDS NRI_0684 NC_013009.1 642857 644233 D identified by match to protein family HMM PF00361; NADH-ubiquinone/plastoquinone oxidoreductase family protein 642857..644233 Neorickettsia risticii str. Illinois 8220756 YP_003081895.1 CDS gidA NC_013009.1 644225 646108 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA complement(644225..646108) Neorickettsia risticii str. Illinois 8220758 YP_003081896.1 CDS NRI_0685 NC_013009.1 646108 646728 R hypothetical protein complement(646108..646728) Neorickettsia risticii str. Illinois 8220757 YP_003081897.1 CDS NRI_0686 NC_013009.1 646819 647148 D hypothetical protein 646819..647148 Neorickettsia risticii str. Illinois 8220759 YP_003081898.1 CDS NRI_0687 NC_013009.1 647188 647739 D identified by match to protein family HMM PF03548; outer membrane lipoprotein carrier protein LolA 647188..647739 Neorickettsia risticii str. Illinois 8220760 YP_003081899.1 CDS NRI_0688 NC_013009.1 647865 647984 R hypothetical protein complement(647865..647984) Neorickettsia risticii str. Illinois 8220761 YP_003081900.1 CDS NRI_0689 NC_013009.1 648452 648685 D nicotinate 648452..648685 Neorickettsia risticii str. Illinois 8220762 YP_003081901.1 CDS recJ NC_013009.1 649178 650911 D identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 649178..650911 Neorickettsia risticii str. Illinois 8220740 YP_003081902.1 CDS NRI_0691 NC_013009.1 651092 651214 D hypothetical protein 651092..651214 Neorickettsia risticii str. Illinois 8220763 YP_003081903.1 CDS nuoF NC_013009.1 651316 652557 D part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 651316..652557 Neorickettsia risticii str. Illinois 8220764 YP_003081904.1 CDS NRI_0693 NC_013009.1 652616 653839 R identified by match to protein family HMM PF08245; match to protein family HMM TIGR01499; folylpolyglutamate synthase complement(652616..653839) Neorickettsia risticii str. Illinois 8220765 YP_003081905.1 CDS trmE NC_013009.1 654341 655993 R identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00450; match to protein family HMM TIGR00650; tRNA modification GTPase TrmE complement(654341..655993) Neorickettsia risticii str. Illinois 8220766 YP_003081906.1 CDS yaeT NC_013009.1 655997 658213 R identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303; outer membrane protein assembly complex, YaeT protein complement(655997..658213) Neorickettsia risticii str. Illinois 8220767 YP_003081907.1 CDS rseP NC_013009.1 658236 659336 R identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054; RIP metalloprotease RseP complement(658236..659336) Neorickettsia risticii str. Illinois 8220768 YP_003081908.1 CDS ispE NC_013009.1 659545 660384 R identified by match to protein family HMM PF00288; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(659545..660384) Neorickettsia risticii str. Illinois 8220769 YP_003081909.1 CDS gyrB NC_013009.1 660412 662688 R identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059; DNA gyrase, B subunit complement(660412..662688) Neorickettsia risticii str. Illinois 8220770 YP_003081910.1 CDS NRI_0699 NC_013009.1 663190 663678 D identified by match to protein family HMM PF00578; match to protein family HMM PF08534; bacterioferritin comigratory protein 663190..663678 Neorickettsia risticii str. Illinois 8220771 YP_003081911.1 CDS NRI_0700 NC_013009.1 663847 665253 D identified by match to protein family HMM PF00474; sodium:proline symporter 663847..665253 Neorickettsia risticii str. Illinois 8220772 YP_003081912.1 CDS NRI_0701 NC_013009.1 665285 666940 D identified by match to protein family HMM PF00805; pentapeptide repeat domain protein 665285..666940 Neorickettsia risticii str. Illinois 8220773 YP_003081913.1 CDS gmk NC_013009.1 666966 667586 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 666966..667586 Neorickettsia risticii str. Illinois 8220774 YP_003081914.1 CDS NRI_0703 NC_013009.1 667670 668071 R hypothetical protein complement(667670..668071) Neorickettsia risticii str. Illinois 8220775 YP_003081915.1 CDS NRI_0704 NC_013009.1 668126 668851 R hypothetical protein complement(668126..668851) Neorickettsia risticii str. Illinois 8220776 YP_003081916.1 CDS NRI_0705 NC_013009.1 669056 670252 D identified by match to protein family HMM PF00285; citrate synthase 669056..670252 Neorickettsia risticii str. Illinois 8220741 YP_003081917.1 CDS NRI_0706 NC_013009.1 670414 671337 R hypothetical protein complement(670414..671337) Neorickettsia risticii str. Illinois 8220778 YP_003081918.1 CDS eno NC_013009.1 671337 672578 R identified by match to protein family HMM PF00113; match to protein family HMM PF03952; match to protein family HMM TIGR01060; phosphopyruvate hydratase complement(671337..672578) Neorickettsia risticii str. Illinois 8220779 YP_003081919.1 CDS ppa NC_013009.1 672658 673176 D identified by match to protein family HMM PF00719; inorganic diphosphatase 672658..673176 Neorickettsia risticii str. Illinois 8220780 YP_003081920.1 CDS NRI_0709 NC_013009.1 673441 673878 R Contains a frameshift based on matches to NSE_0735 (N-terminal fragment), if combined with NRI_0710 (ORF00685); hypothetical protein complement(673441..673878) Neorickettsia risticii str. Illinois 8220781 YP_003081921.1 CDS NRI_0710 NC_013009.1 673958 674314 R Contains a frameshift based on matches to NSE_0735 (C-terminal fragment), if combined with NRI_0709 (ORF00684); hypothetical protein complement(673958..674314) Neorickettsia risticii str. Illinois 8220782 YP_003081922.1 CDS gltX NC_013009.1 674374 675603 R identified by match to protein family HMM PF00749; match to protein family HMM TIGR00464; glutamyl-tRNA synthetase complement(674374..675603) Neorickettsia risticii str. Illinois 8220984 YP_003081923.1 CDS NRI_0712 NC_013009.1 675702 676259 R identified by match to protein family HMM PF02660; membrane protein complement(675702..676259) Neorickettsia risticii str. Illinois 8220783 YP_003081924.1 CDS NRI_0713 NC_013009.1 676486 678411 R identified by match to protein family HMM PF02534; type IV secretion system component VirD4 complement(676486..678411) Neorickettsia risticii str. Illinois 8220784 YP_003081925.1 CDS virB NC_013009.1 678443 679438 R identified by match to protein family HMM PF00437; match to protein family HMM TIGR02788; type IV secretion system ATPase VirB11 complement(678443..679438) Neorickettsia risticii str. Illinois 8220785 YP_003081926.1 CDS NRI_0715 NC_013009.1 679445 680686 R identified by match to protein family HMM PF03743; type IV secretion system protein VirB10 complement(679445..680686) Neorickettsia risticii str. Illinois 8220786 YP_003081927.1 CDS NRI_0716 NC_013009.1 680664 680822 R type IV secretion system protein VirB10, Frame-Shift complement(680664..680822) Neorickettsia risticii str. Illinois 8220787 YP_003081928.1 CDS virB9 NC_013009.1 680829 681551 R identified by match to protein family HMM PF03524; match to protein family HMM TIGR02781; type IV secretion system protein VirB9 complement(680829..681551) Neorickettsia risticii str. Illinois 8220788 YP_003081929.1 CDS NRI_0718 NC_013009.1 681538 682248 R identified by match to protein family HMM PF04335; type IV secretion system protein VirB8 complement(681538..682248) Neorickettsia risticii str. Illinois 8220789 YP_003081930.1 CDS NRI_0719 NC_013009.1 682490 683551 R identified by match to protein family HMM PF00925; match to protein family HMM TIGR00505; GTP cyclohydrolase II complement(682490..683551) Neorickettsia risticii str. Illinois 8220790 YP_003081931.1 CDS pdhB NC_013009.1 683781 684779 D catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acyltransferase within the complex. The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2); it contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase; pyruvate dehydrogenase subunit beta 683781..684779 Neorickettsia risticii str. Illinois 8220742 YP_003081932.1 CDS NRI_0721 NC_013009.1 685143 685406 D hypothetical protein 685143..685406 Neorickettsia risticii str. Illinois 8220791 YP_003081933.1 CDS NRI_0722 NC_013009.1 685575 685898 D hypothetical protein 685575..685898 Neorickettsia risticii str. Illinois 8220743 YP_003081934.1 CDS NRI_0724 NC_013009.1 686015 687316 D identified by match to protein family HMM PF00254; trigger factor 686015..687316 Neorickettsia risticii str. Illinois 8220079 YP_003081935.1 CDS clpP NC_013009.1 687329 687958 D identified by match to protein family HMM PF00574; Clp protease 687329..687958 Neorickettsia risticii str. Illinois 8220744 YP_003081936.1 CDS clpX NC_013009.1 687942 689144 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 687942..689144 Neorickettsia risticii str. Illinois 8220793 YP_003081937.1 CDS NRI_0728 NC_013009.1 689978 690277 D hypothetical protein 689978..690277 Neorickettsia risticii str. Illinois 8220745 YP_003081938.1 CDS glyS NC_013009.1 690272 692362 R identified by match to protein family HMM PF02092; match to protein family HMM PF05746; match to protein family HMM TIGR00211; glycyl-tRNA synthetase, beta subunit complement(690272..692362) Neorickettsia risticii str. Illinois 8220746 YP_003081939.1 CDS glyQ NC_013009.1 692355 693218 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(692355..693218) Neorickettsia risticii str. Illinois 8220794 YP_003081940.1 CDS NRI_0730 NC_013009.1 693308 694501 R identified by match to protein family HMM PF00155; aspartate aminotransferase A complement(693308..694501) Neorickettsia risticii str. Illinois 8220795 YP_003081941.1 CDS NRI_0731 NC_013009.1 694793 695248 D identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein 694793..695248 Neorickettsia risticii str. Illinois 8220747 YP_003081942.1 CDS NRI_0732 NC_013009.1 695384 695974 R identified by match to protein family HMM PF08511; match to protein family HMM TIGR02396; RpsU-divergently transcribed protein complement(695384..695974) Neorickettsia risticii str. Illinois 8220796 YP_003081943.1 CDS NRI_0733 NC_013009.1 695990 696634 R identified by match to protein family HMM PF00923; match to protein family HMM TIGR00875; transaldolase complement(695990..696634) Neorickettsia risticii str. Illinois 8220748 YP_003081944.1 CDS NRI_0734 NC_013009.1 696638 696973 R identified by match to protein family HMM PF02823; ATP synthase subunits delta/epsilon complement(696638..696973) Neorickettsia risticii str. Illinois 8220797 YP_003081945.1 CDS atpD NC_013009.1 696974 698398 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(696974..698398) Neorickettsia risticii str. Illinois 8220749 YP_003081946.1 CDS NRI_0736 NC_013009.1 698537 701086 R hypothetical protein complement(698537..701086) Neorickettsia risticii str. Illinois 8220798 YP_003081947.1 CDS NRI_0737 NC_013009.1 701053 703200 R type IV secretion system protein VirB4 complement(701053..703200) Neorickettsia risticii str. Illinois 8220806 YP_003081948.1 CDS NRI_0738 NC_013009.1 703399 703761 R type IV secretion system protein VirB2 complement(703399..703761) Neorickettsia risticii str. Illinois 8220799 YP_003081949.1 CDS NRI_0739 NC_013009.1 703655 703771 R hypothetical protein complement(703655..703771) Neorickettsia risticii str. Illinois 8220807 YP_003081950.1 CDS NRI_0740 NC_013009.1 703972 704319 R type IV secretion system protein VirB2 complement(703972..704319) Neorickettsia risticii str. Illinois 8220777 YP_003081951.1 CDS NRI_0742 NC_013009.1 704105 704533 D lipoprotein 704105..704533 Neorickettsia risticii str. Illinois 8220800 YP_003081952.1 CDS lepA NC_013009.1 704505 706295 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(704505..706295) Neorickettsia risticii str. Illinois 8220802 YP_003081953.1 CDS lysK NC_013009.1 706477 707994 R class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; lysyl-tRNA synthetase complement(706477..707994) Neorickettsia risticii str. Illinois 8220801 YP_003081954.1 CDS NRI_0744 NC_013009.1 708427 708906 D hypothetical protein 708427..708906 Neorickettsia risticii str. Illinois 8220803 YP_003081955.1 CDS NRI_0745 NC_013009.1 709092 709970 R identified by match to protein family HMM PF00899; match to protein family HMM PF05237; molybdopterin biosynthesis protein MoeB complement(709092..709970) Neorickettsia risticii str. Illinois 8220804 YP_003081956.1 CDS NRI_0746 NC_013009.1 710044 711045 D identified by match to protein family HMM PF00070; match to protein family HMM PF03486; match to protein family HMM PF07992; thioredoxin reductase 710044..711045 Neorickettsia risticii str. Illinois 8220805 YP_003081957.1 CDS hisS NC_013009.1 711232 712473 R identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442; histidyl-tRNA synthetase complement(711232..712473) Neorickettsia risticii str. Illinois 8220808 YP_003081958.1 CDS NRI_0748 NC_013009.1 712454 712741 R identified by match to protein family HMM PF01722; BolA family protein complement(712454..712741) Neorickettsia risticii str. Illinois 8220821 YP_003081959.1 CDS NRI_0749 NC_013009.1 712824 714071 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator family transporter complement(712824..714071) Neorickettsia risticii str. Illinois 8220809 YP_003081960.1 CDS lepB NC_013009.1 714510 715139 D identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 714510..715139 Neorickettsia risticii str. Illinois 8220822 YP_003081961.1 CDS NRI_0751 NC_013009.1 715266 716516 R identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; hypothetical protein complement(715266..716516) Neorickettsia risticii str. Illinois 8220810 YP_003081962.1 CDS NRI_0752 NC_013009.1 716564 716740 D hypothetical protein 716564..716740 Neorickettsia risticii str. Illinois 8220823 YP_003081963.1 CDS NRI_0753 NC_013009.1 716790 718130 D hypothetical protein 716790..718130 Neorickettsia risticii str. Illinois 8220811 YP_003081964.1 CDS NRI_0754 NC_013009.1 718145 718681 D hypothetical protein 718145..718681 Neorickettsia risticii str. Illinois 8220824 YP_003081965.1 CDS NRI_0755 NC_013009.1 718839 719660 D hypothetical protein 718839..719660 Neorickettsia risticii str. Illinois 8220812 YP_003081966.1 CDS hemH NC_013009.1 719676 720653 R identified by match to protein family HMM PF00762; match to protein family HMM TIGR00109; ferrochelatase complement(719676..720653) Neorickettsia risticii str. Illinois 8220825 YP_003081967.1 CDS NRI_0757 NC_013009.1 720784 721752 R hypothetical protein complement(720784..721752) Neorickettsia risticii str. Illinois 8220813 YP_003081968.1 CDS rpsT NC_013009.1 721823 722086 R identified by match to protein family HMM PF01649; match to protein family HMM TIGR00029; ribosomal protein S20 complement(721823..722086) Neorickettsia risticii str. Illinois 8220826 YP_003081969.1 CDS NRI_0759 NC_013009.1 722223 722345 R hypothetical protein complement(722223..722345) Neorickettsia risticii str. Illinois 8220814 YP_003081970.1 CDS pyrF NC_013009.1 722549 723235 D identified by match to protein family HMM PF00215; match to protein family HMM TIGR01740; orotidine 5'-phosphate decarboxylase 722549..723235 Neorickettsia risticii str. Illinois 8220827 YP_003081971.1 CDS NRI_0761 NC_013009.1 723279 723977 R identified by match to protein family HMM PF03741; membrane protein, TerC family complement(723279..723977) Neorickettsia risticii str. Illinois 8220815 YP_003081972.1 CDS NRI_0762 NC_013009.1 724181 724303 R hypothetical protein complement(724181..724303) Neorickettsia risticii str. Illinois 8220828 YP_003081973.1 CDS NRI_0763 NC_013009.1 724490 725989 D identified by match to protein family HMM PF01039; propionyl-CoA carboxylase beta chain 724490..725989 Neorickettsia risticii str. Illinois 8220816 YP_003081974.1 CDS NRI_0764 NC_013009.1 726091 726654 D hypothetical protein 726091..726654 Neorickettsia risticii str. Illinois 8220829 YP_003081975.1 CDS NRI_0765 NC_013009.1 726820 728142 D identified by match to protein family HMM PF02321; outer membrane efflux protein 726820..728142 Neorickettsia risticii str. Illinois 8220817 YP_003081976.1 CDS ispG NC_013009.1 728237 729481 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(728237..729481) Neorickettsia risticii str. Illinois 8220830 YP_003081977.1 CDS NRI_0767 NC_013009.1 729534 730241 R inositol monophosphatase family protein complement(729534..730241) Neorickettsia risticii str. Illinois 8220818 YP_003081978.1 CDS pdhA NC_013009.1 730337 731305 R identified by match to protein family HMM PF00676; match to protein family HMM TIGR03182; pyruvate dehydrogenase E1 component, alpha subunit complement(730337..731305) Neorickettsia risticii str. Illinois 8220831 YP_003081979.1 CDS NRI_0770 NC_013009.1 734352 734510 R hypothetical protein complement(734352..734510) Neorickettsia risticii str. Illinois 8220056 YP_003081980.1 CDS NRI_0771 NC_013009.1 734558 734674 D hypothetical protein 734558..734674 Neorickettsia risticii str. Illinois 8220820 YP_003081981.1 CDS NRI_0772 NC_013009.1 734664 735506 D identified by match to protein family HMM PF01040; 4-hydroxybenzoate octaprenyltransferase 734664..735506 Neorickettsia risticii str. Illinois 8220832 YP_003081982.1 CDS NRI_0773 NC_013009.1 735503 735961 D identified by match to protein family HMM PF01613; flavin reductase family protein 735503..735961 Neorickettsia risticii str. Illinois 8220835 YP_003081983.1 CDS NRI_0774 NC_013009.1 736063 736830 D identified by match to protein family HMM PF00005; phosphate import ATP-binding protein PstB 736063..736830 Neorickettsia risticii str. Illinois 8220833 YP_003081984.1 CDS NRI_0776 NC_013009.1 737285 737416 R hypothetical protein complement(737285..737416) Neorickettsia risticii str. Illinois 8220063 YP_003081985.1 CDS smpB NC_013009.1 737485 737928 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(737485..737928) Neorickettsia risticii str. Illinois 8220834 YP_003081986.1 CDS NRI_0778 NC_013009.1 738175 741015 D identified by match to protein family HMM PF00586; match to protein family HMM PF02769; phosphoribosylformylglycinamidine synthase 738175..741015 Neorickettsia risticii str. Illinois 8220837 YP_003081987.1 CDS NRI_0779 NC_013009.1 741054 741206 R hypothetical protein complement(741054..741206) Neorickettsia risticii str. Illinois 8220849 YP_003081988.1 CDS NRI_0780 NC_013009.1 741571 742842 R permease complement(741571..742842) Neorickettsia risticii str. Illinois 8220838 YP_003081989.1 CDS NRI_0781 NC_013009.1 742981 744939 R identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443; propionyl-CoA carboxylase alpha chain complement(742981..744939) Neorickettsia risticii str. Illinois 8220850 YP_003081990.1 CDS NRI_0782 NC_013009.1 744911 745810 R identified by match to protein family HMM PF00156; match to protein family HMM TIGR01251; ribose-phosphate pyrophosphokinase complement(744911..745810) Neorickettsia risticii str. Illinois 8220839 YP_003081991.1 CDS NRI_0783 NC_013009.1 745819 745968 R hypothetical protein complement(745819..745968) Neorickettsia risticii str. Illinois 8220851 YP_003081992.1 CDS NRI_0784 NC_013009.1 745988 746530 R identified by match to protein family HMM PF01106; match to protein family HMM PF08712; hira-interacting protein 5 complement(745988..746530) Neorickettsia risticii str. Illinois 8220840 YP_003081993.1 CDS NRI_0785 NC_013009.1 746611 746997 D identified by match to protein family HMM PF00226; DnaJ domain protein 746611..746997 Neorickettsia risticii str. Illinois 8220852 YP_003081994.1 CDS NRI_0787 NC_013009.1 747208 747690 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 747208..747690 Neorickettsia risticii str. Illinois 8220841 YP_003081995.1 CDS NRI_0786 NC_013009.1 747652 747789 R hypothetical protein complement(747652..747789) Neorickettsia risticii str. Illinois 8220842 YP_003081996.1 CDS NRI_0788 NC_013009.1 747811 747954 R hypothetical protein complement(747811..747954) Neorickettsia risticii str. Illinois 8220853 YP_003081997.1 CDS NRI_0790 NC_013009.1 747917 748561 D identified by match to protein family HMM PF02882; tetrahydrofolate dehydrogenase/cyclohydrolase 747917..748561 Neorickettsia risticii str. Illinois 8220854 YP_003081999.1 CDS NRI_0792 NC_013009.1 748829 749227 R hypothetical protein complement(748829..749227) Neorickettsia risticii str. Illinois 8220086 YP_003082000.1 CDS NRI_0793 NC_013009.1 749304 750665 D hypothetical protein 749304..750665 Neorickettsia risticii str. Illinois 8220843 YP_003082001.1 CDS NRI_0794 NC_013009.1 750771 751859 R identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase complement(750771..751859) Neorickettsia risticii str. Illinois 8220856 YP_003082003.1 CDS hemA NC_013009.1 752494 753714 D catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase 752494..753714 Neorickettsia risticii str. Illinois 8220072 YP_003082004.1 CDS rpsU NC_013009.1 753743 753937 R identified by match to protein family HMM TIGR00030; ribosomal protein S21 complement(753743..753937) Neorickettsia risticii str. Illinois 8220845 YP_003082005.1 CDS NRI_0799 NC_013009.1 754013 754420 R identified by match to protein family HMM PF03100; cytochrome c-type biogenesis protein CcmE complement(754013..754420) Neorickettsia risticii str. Illinois 8220857 YP_003082006.1 CDS NRI_0800 NC_013009.1 754422 756050 R identified by match to protein family HMM PF00753; match to protein family HMM PF07521; metallo-beta-lactamase family, beta-casp subfamily complement(754422..756050) Neorickettsia risticii str. Illinois 8220846 YP_003082007.1 CDS miaB NC_013009.1 756450 757814 D identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01574; tRNA-I(6)A37 thiotransferase enzyme MiaB 756450..757814 Neorickettsia risticii str. Illinois 8220858 YP_003082008.1 CDS NRI_0801 NC_013009.1 757811 757990 R hypothetical protein complement(757811..757990) Neorickettsia risticii str. Illinois 8220859 YP_003082009.1 CDS NRI_0804 NC_013009.1 758495 758656 D hypothetical protein 758495..758656 Neorickettsia risticii str. Illinois 8220087 YP_003082010.1 CDS phrB NC_013009.1 758826 760235 D identified by match to protein family HMM PF00875; match to protein family HMM PF03441; deoxyribodipyrimidine photolyase 758826..760235 Neorickettsia risticii str. Illinois 8220848 YP_003082011.1 CDS NRI_0806 NC_013009.1 760267 760989 R hypothetical protein complement(760267..760989) Neorickettsia risticii str. Illinois 8220860 YP_003082012.1 CDS rpsI NC_013009.1 761023 761460 R identified by match to protein family HMM PF00380; 30S ribosomal protein S9 complement(761023..761460) Neorickettsia risticii str. Illinois 8220862 YP_003082013.1 CDS rplM NC_013009.1 761463 761921 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(761463..761921) Neorickettsia risticii str. Illinois 8220863 YP_003082014.1 CDS NRI_0809 NC_013009.1 761985 762626 R identified by match to protein family HMM PF02674; CvpA family protein complement(761985..762626) Neorickettsia risticii str. Illinois 8220864 YP_003082015.1 CDS NRI_0810 NC_013009.1 762627 765116 R identified by match to protein family HMM PF06808; match to protein family HMM TIGR02123; trap transporter, 4tm/12tm fusion protein complement(762627..765116) Neorickettsia risticii str. Illinois 8220865 YP_003082016.1 CDS NRI_0811 NC_013009.1 765234 765851 R identified by match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase, Fe complement(765234..765851) Neorickettsia risticii str. Illinois 8220866 YP_003082017.1 CDS NRI_0812 NC_013009.1 766033 766623 D glycoprotease family protein 766033..766623 Neorickettsia risticii str. Illinois 8220867 YP_003082018.1 CDS NRI_0813 NC_013009.1 766644 767786 D identified by match to protein family HMM PF05525; branched-chain amino acid transporter 766644..767786 Neorickettsia risticii str. Illinois 8220868 YP_003082019.1 CDS NRI_0814 NC_013009.1 767982 769181 D identified by match to protein family HMM PF07690; major facilitator family transporter 767982..769181 Neorickettsia risticii str. Illinois 8220869 YP_003082020.1 CDS NRI_0815 NC_013009.1 769190 770221 R identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein complement(769190..770221) Neorickettsia risticii str. Illinois 8220870 YP_003082021.1 CDS NRI_0817 NC_013009.1 770576 771283 D identified by match to protein family HMM PF00596; hypothetical protein 770576..771283 Neorickettsia risticii str. Illinois 8220067 YP_003082022.1 CDS NRI_0818 NC_013009.1 771317 771472 R hypothetical protein complement(771317..771472) Neorickettsia risticii str. Illinois 8220872 YP_003082023.1 CDS argD NC_013009.1 771476 772465 D DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine transaminase protein 771476..772465 Neorickettsia risticii str. Illinois 8220873 YP_003082024.1 CDS NRI_0820 NC_013009.1 772528 773187 R identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase, cyclophilin-type complement(772528..773187) Neorickettsia risticii str. Illinois 8220861 YP_003082025.1 CDS purC NC_013009.1 773327 774049 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(773327..774049) Neorickettsia risticii str. Illinois 8220875 YP_003082026.1 CDS ribE NC_013009.1 774363 774965 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 774363..774965 Neorickettsia risticii str. Illinois 8220874 YP_003082027.1 CDS lgt NC_013009.1 775070 775870 D identified by match to protein family HMM PF01790; match to protein family HMM TIGR00544; prolipoprotein diacylglyceryl transferase 775070..775870 Neorickettsia risticii str. Illinois 8220876 YP_003082028.1 CDS coxW NC_013009.1 775913 776932 R identified by match to protein family HMM PF02628; cytochrome c oxidase assembly protein complement(775913..776932) Neorickettsia risticii str. Illinois 8220877 YP_003082029.1 CDS NRI_0825 NC_013009.1 777362 777580 D ribonuclease P protein component 777362..777580 Neorickettsia risticii str. Illinois 8220878 YP_003082030.1 CDS NRI_0826 NC_013009.1 777583 777894 D hypothetical protein 777583..777894 Neorickettsia risticii str. Illinois 8220879 YP_003082031.1 CDS NRI_0827 NC_013009.1 777907 781179 R identified by match to protein family HMM PF04610; type IV secretion system protein, VirB6 family complement(777907..781179) Neorickettsia risticii str. Illinois 8220880 YP_003082032.1 CDS NRI_0828 NC_013009.1 781166 784648 R identified by match to protein family HMM PF04610; type IV secretion system protein, VirB6 family complement(781166..784648) Neorickettsia risticii str. Illinois 8220881 YP_003082033.1 CDS NRI_0829 NC_013009.1 784683 787202 R identified by match to protein family HMM PF04610; type IV secretion system protein, VirB6 family complement(784683..787202) Neorickettsia risticii str. Illinois 8220882 YP_003082034.1 CDS NRI_0830 NC_013009.1 787219 789780 R identified by match to protein family HMM PF04610; type IV secretion system protein VirB6 complement(787219..789780) Neorickettsia risticii str. Illinois 8220883 YP_003082035.1 CDS NRI_0831 NC_013009.1 789777 792188 R identified by match to protein family HMM PF03135; match to protein family HMM TIGR00929; type IV secretion system ATPase VirB4 complement(789777..792188) Neorickettsia risticii str. Illinois 8220884 YP_003082036.1 CDS NRI_0832 NC_013009.1 792191 792487 R identified by match to protein family HMM PF05101; type IV secretion system protein VirB3 complement(792191..792487) Neorickettsia risticii str. Illinois 8220885 YP_003082037.1 CDS NRI_0833 NC_013009.1 792817 794628 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; efflux ABC transporter, heavy metal transporter (HMT) family, permease/ATP-binding protein complement(792817..794628) Neorickettsia risticii str. Illinois 8220886 YP_003082038.1 CDS NRI_0834 NC_013009.1 794731 795798 R identified by match to protein family HMM PF01734; phospholipase, patatin family complement(794731..795798) Neorickettsia risticii str. Illinois 8220887 YP_003082039.1 CDS NRI_0835 NC_013009.1 795815 795991 R hypothetical protein complement(795815..795991) Neorickettsia risticii str. Illinois 8220888 YP_003082040.1 CDS NRI_0836 NC_013009.1 796168 797034 D hypothetical protein 796168..797034 Neorickettsia risticii str. Illinois 8220889 YP_003082041.1 CDS NRI_0837 NC_013009.1 797138 798001 D identified by match to protein family HMM PF00561; alpha/beta hydrolase 797138..798001 Neorickettsia risticii str. Illinois 8220890 YP_003082042.1 CDS nsp1 NC_013009.1 798127 798909 D Wsp-like surface protein 798127..798909 Neorickettsia risticii str. Illinois 8220891 YP_003082043.1 CDS nsp2 NC_013009.1 799233 800159 D Wsp-like surface protein 799233..800159 Neorickettsia risticii str. Illinois 8220892 YP_003082044.1 CDS NRI_0840 NC_013009.1 800159 800335 D hypothetical protein 800159..800335 Neorickettsia risticii str. Illinois 8220893 YP_003082045.1 CDS nsp3 NC_013009.1 800528 801256 D identified by match to protein family HMM PF01617; Wsp-like surface protein 800528..801256 Neorickettsia risticii str. Illinois 8220894 YP_003082046.1 CDS NRI_0842 NC_013009.1 801317 801640 D identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 801317..801640 Neorickettsia risticii str. Illinois 8220895 YP_003082047.1 CDS pyrG NC_013009.1 801615 803279 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 801615..803279 Neorickettsia risticii str. Illinois 8220896 YP_003082049.1 CDS NRI_0846 NC_013009.1 803629 805584 D hypothetical protein 803629..805584 Neorickettsia risticii str. Illinois 8220060 YP_003082050.1 CDS NRI_0847 NC_013009.1 805592 806017 R N utilization substance protein B complement(805592..806017) Neorickettsia risticii str. Illinois 8220898 YP_003082051.1 CDS NRI_0848 NC_013009.1 806007 806627 R identified by match to protein family HMM PF02545; hypothetical protein complement(806007..806627) Neorickettsia risticii str. Illinois 8220899 YP_003082052.1 CDS infA NC_013009.1 806670 806951 R identified by match to protein family HMM PF01176; match to protein family HMM TIGR00008; translation initiation factor IF-1 complement(806670..806951) Neorickettsia risticii str. Illinois 8220901 YP_003082053.1 CDS NRI_0850 NC_013009.1 807003 807218 R hypothetical protein complement(807003..807218) Neorickettsia risticii str. Illinois 8220915 YP_003082054.1 CDS NRI_0851 NC_013009.1 807296 807553 R hypothetical protein complement(807296..807553) Neorickettsia risticii str. Illinois 8220902 YP_003082055.1 CDS NRI_0852 NC_013009.1 807330 807860 D thiol-disulfide isomerase, thioredoxin family 807330..807860 Neorickettsia risticii str. Illinois 8220900 YP_003082056.1 CDS NRI_0853 NC_013009.1 807882 809618 D identified by match to protein family HMM PF00999; match to protein family HMM PF02254; match to protein family HMM TIGR00932; glutathione-regulated potassium-efflux system protein 807882..809618 Neorickettsia risticii str. Illinois 8220916 YP_003082057.1 CDS guaA NC_013009.1 809681 811240 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(809681..811240) Neorickettsia risticii str. Illinois 8220903 YP_003082058.1 CDS mrp NC_013009.1 811371 812111 R identified by match to protein family HMM PF01656; Mrp protein complement(811371..812111) Neorickettsia risticii str. Illinois 8220917 YP_003082059.1 CDS ompA NC_013009.1 812524 813150 D peptidoglycan-associated lipoprotein (PAL/OmpA) 812524..813150 Neorickettsia risticii str. Illinois 8220904 YP_003082060.1 CDS NRI_0857 NC_013009.1 813161 814012 D hypothetical protein 813161..814012 Neorickettsia risticii str. Illinois 8220918 YP_003082061.1 CDS gpmI NC_013009.1 814082 815554 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 814082..815554 Neorickettsia risticii str. Illinois 8220905 YP_003082062.1 CDS NRI_0859 NC_013009.1 815569 816342 R hypothetical protein complement(815569..816342) Neorickettsia risticii str. Illinois 8220919 YP_003082063.1 CDS metG NC_013009.1 816506 818071 D identified by match to protein family HMM PF09334; match to protein family HMM TIGR00398; methionyl-tRNA synthetase 816506..818071 Neorickettsia risticii str. Illinois 8220906 YP_003082064.1 CDS trx NC_013009.1 818107 818415 R identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin complement(818107..818415) Neorickettsia risticii str. Illinois 8220920 YP_003082065.1 CDS rplS NC_013009.1 818425 818787 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(818425..818787) Neorickettsia risticii str. Illinois 8220907 YP_003082066.1 CDS trmD NC_013009.1 818811 819467 R identified by match to protein family HMM PF01746; match to protein family HMM TIGR00088; tRNA (guanine-N1)-methyltransferase complement(818811..819467) Neorickettsia risticii str. Illinois 8220921 YP_003082067.1 CDS rpmA NC_013009.1 819500 819748 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(819500..819748) Neorickettsia risticii str. Illinois 8220908 YP_003082068.1 CDS rplU NC_013009.1 819800 820168 R identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; ribosomal protein L21 complement(819800..820168) Neorickettsia risticii str. Illinois 8220922 YP_003082069.1 CDS recR NC_013009.1 820211 820801 R identified by match to protein family HMM PF01751; match to protein family HMM PF02132; match to protein family HMM TIGR00615; recombination protein RecR complement(820211..820801) Neorickettsia risticii str. Illinois 8220909 YP_003082070.1 CDS NRI_0867 NC_013009.1 820872 821561 D hypothetical protein 820872..821561 Neorickettsia risticii str. Illinois 8220923 YP_003082071.1 CDS NRI_0868 NC_013009.1 821764 822609 D identified by match to protein family HMM PF01323; disulfide oxidoreductase 821764..822609 Neorickettsia risticii str. Illinois 8220910 YP_003082072.1 CDS NRI_0869 NC_013009.1 823002 823328 D hypothetical protein 823002..823328 Neorickettsia risticii str. Illinois 8220924 YP_003082073.1 CDS ssa1 NC_013009.1 823570 825075 D 50kDa strain-specific antigen 823570..825075 Neorickettsia risticii str. Illinois 8220911 YP_003082074.1 CDS ssa2 NC_013009.1 825199 826737 D 50kDa strain-specific antigen 825199..826737 Neorickettsia risticii str. Illinois 8220925 YP_003082075.1 CDS ssa3 NC_013009.1 827285 828586 D 50 kDa strain-specific antigen 827285..828586 Neorickettsia risticii str. Illinois 8220912 YP_003082076.1 CDS ychF NC_013009.1 829039 830091 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 829039..830091 Neorickettsia risticii str. Illinois 8220926 YP_003082078.1 CDS NRI_0876 NC_013009.1 830405 830518 R hypothetical protein complement(830405..830518) Neorickettsia risticii str. Illinois 8220064 YP_003082079.1 CDS NRI_0877 NC_013009.1 830506 831852 R identified by match to protein family HMM PF05193; peptidase, M16 family complement(830506..831852) Neorickettsia risticii str. Illinois 8220914 YP_003082080.1 CDS NRI_0878 NC_013009.1 831855 833168 R identified by match to protein family HMM PF00675; match to protein family HMM PF05193; peptidase, M16 family complement(831855..833168) Neorickettsia risticii str. Illinois 8220927 YP_003082081.1 CDS lspA NC_013009.1 833181 833684 R identified by match to protein family HMM PF01252; match to protein family HMM TIGR00077; signal peptidase II complement(833181..833684) Neorickettsia risticii str. Illinois 8220929 YP_003082082.1 CDS NRI_0880 NC_013009.1 833739 835094 R identified by match to protein family HMM PF02074; carboxypeptidase complement(833739..835094) Neorickettsia risticii str. Illinois 8220928 YP_003082083.1 CDS NRI_0881 NC_013009.1 835377 835736 D hypothetical protein 835377..835736 Neorickettsia risticii str. Illinois 8220930 YP_003082084.1 CDS NRI_0882 NC_013009.1 835726 836067 D hypothetical protein 835726..836067 Neorickettsia risticii str. Illinois 8220942 YP_003082085.1 CDS rnc NC_013009.1 836106 836774 R identified by match to protein family HMM PF00035; match to protein family HMM PF00636; match to protein family HMM TIGR02191; ribonuclease III complement(836106..836774) Neorickettsia risticii str. Illinois 8220931 YP_003082086.1 CDS NRI_0884 NC_013009.1 836765 836971 R iojap-related protein complement(836765..836971) Neorickettsia risticii str. Illinois 8220943 YP_003082087.1 CDS mraW NC_013009.1 837472 838362 R identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW complement(837472..838362) Neorickettsia risticii str. Illinois 8220932 YP_003082088.1 CDS NRI_0886 NC_013009.1 838492 839145 R identified by match to protein family HMM PF02390; tRNA (guanine-N(7)-)-methyltransferase complement(838492..839145) Neorickettsia risticii str. Illinois 8220944 YP_003082089.1 CDS NRI_0887 NC_013009.1 839239 839922 R competence protein ComL complement(839239..839922) Neorickettsia risticii str. Illinois 8220933 YP_003082090.1 CDS purD NC_013009.1 839945 841234 D identified by match to protein family HMM PF01071; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877; phosphoribosylamine--glycine ligase 839945..841234 Neorickettsia risticii str. Illinois 8220945 YP_003082091.1 CDS NRI_0889 NC_013009.1 841383 842147 R hypothetical protein complement(841383..842147) Neorickettsia risticii str. Illinois 8220934 YP_003082092.1 CDS NRI_0890 NC_013009.1 842171 842914 R hypothetical protein complement(842171..842914) Neorickettsia risticii str. Illinois 8220946 YP_003082093.1 CDS dapA NC_013009.1 843339 844265 D identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674; dihydrodipicolinate synthase 843339..844265 Neorickettsia risticii str. Illinois 8220935 YP_003082094.1 CDS NRI_0892 NC_013009.1 844412 844567 R hypothetical protein complement(844412..844567) Neorickettsia risticii str. Illinois 8220947 YP_003082095.1 CDS NRI_0893 NC_013009.1 845094 845522 D identified by match to protein family HMM PF01292; cytochrome b561 family protein 845094..845522 Neorickettsia risticii str. Illinois 8220936 YP_003082096.1 CDS NRI_0894 NC_013009.1 845823 846467 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD-superfamily hydrolase, subfamily IA, variant 1 845823..846467 Neorickettsia risticii str. Illinois 8220948 YP_003082097.1 CDS NRI_0895 NC_013009.1 846562 847305 D identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758; uracil-DNA glycosylase, family 4 846562..847305 Neorickettsia risticii str. Illinois 8220937 YP_003082098.1 CDS NRI_0896 NC_013009.1 847295 848062 D identified by match to protein family HMM PF04333; VacJ lipoprotein 847295..848062 Neorickettsia risticii str. Illinois 8220949 YP_003082099.1 CDS NRI_0897 NC_013009.1 848046 848657 D hypothetical protein 848046..848657 Neorickettsia risticii str. Illinois 8220938 YP_003082100.1 CDS NRI_0898 NC_013009.1 848712 848903 R hypothetical protein complement(848712..848903) Neorickettsia risticii str. Illinois 8220950 YP_003082101.1 CDS aprE NC_013009.1 849418 850917 D identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843; secretion protein, HlyD family 849418..850917 Neorickettsia risticii str. Illinois 8220939 YP_003082102.1 CDS NRI_0900 NC_013009.1 851064 852194 D identified by match to protein family HMM PF01761; 3-dehydroquinate synthase 851064..852194 Neorickettsia risticii str. Illinois 8220951 YP_003082103.1 CDS NRI_0901 NC_013009.1 852199 852447 D identified by match to protein family HMM PF03937; TPR repeat region superfamily 852199..852447 Neorickettsia risticii str. Illinois 8220940 YP_003082104.1 CDS cdsA NC_013009.1 852525 853142 R identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase complement(852525..853142) Neorickettsia risticii str. Illinois 8220952 YP_003082105.1 CDS uppS NC_013009.1 853338 854030 R identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055; UDP diphosphate synthase complement(853338..854030) Neorickettsia risticii str. Illinois 8220941 YP_003082106.1 CDS frr NC_013009.1 854027 854584 R identified by match to protein family HMM PF01765; match to protein family HMM TIGR00496; ribosome recycling factor complement(854027..854584) Neorickettsia risticii str. Illinois 8220953 YP_003082107.1 CDS pyrH NC_013009.1 854609 855310 R identified by match to protein family HMM PF00696; match to protein family HMM TIGR02075; uridylate kinase complement(854609..855310) Neorickettsia risticii str. Illinois 8220956 YP_003082108.1 CDS tsf NC_013009.1 855317 856189 R identified by match to protein family HMM PF00627; match to protein family HMM PF00889; match to protein family HMM TIGR00116; translation elongation factor Ts complement(855317..856189) Neorickettsia risticii str. Illinois 8220954 YP_003082109.1 CDS rpsB NC_013009.1 856213 857109 R identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; 30S ribosomal protein S2 complement(856213..857109) Neorickettsia risticii str. Illinois 8220957 YP_003082110.1 CDS NRI_0908 NC_013009.1 857085 857222 R hypothetical protein complement(857085..857222) Neorickettsia risticii str. Illinois 8220955 YP_003082111.1 CDS NRI_0909 NC_013009.1 857298 857990 D identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR01934; ubiquinone/menaquinone biosynthesis methyltransferase UbiE 857298..857990 Neorickettsia risticii str. Illinois 8220958 YP_003082112.1 CDS NRI_0910 NC_013009.1 858324 859763 D identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01349; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 858324..859763 Neorickettsia risticii str. Illinois 8220960 YP_003082113.1 CDS NRI_0911 NC_013009.1 859961 860725 D identified by match to protein family HMM PF08543; phosphomethylpyrimidine kinase 859961..860725 Neorickettsia risticii str. Illinois 8220961 YP_003082114.1 CDS NRI_0912 NC_013009.1 860740 861240 R identified by match to protein family HMM PF02075; crossover junction endodeoxyribonuclease RuvC complement(860740..861240) Neorickettsia risticii str. Illinois 8220962 YP_003082115.1 CDS NRI_0913 NC_013009.1 861332 862279 R identified by match to protein family HMM PF00056; match to protein family HMM PF02866; malate dehydrogenase complement(861332..862279) Neorickettsia risticii str. Illinois 8220963 YP_003082116.1 CDS NRI_0914 NC_013009.1 862443 862556 R hypothetical protein complement(862443..862556) Neorickettsia risticii str. Illinois 8220964 YP_003082117.1 CDS dut NC_013009.1 862627 863076 D identified by match to protein family HMM PF00692; match to protein family HMM TIGR00576; deoxyuridine 5triphosphate nucleotidohydrolase 862627..863076 Neorickettsia risticii str. Illinois 8220965 YP_003082118.1 CDS NRI_0916 NC_013009.1 863171 863365 D hypothetical protein 863171..863365 Neorickettsia risticii str. Illinois 8220966 YP_003082119.1 CDS gyrA NC_013009.1 863371 865980 D identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063; DNA gyrase, A subunit 863371..865980 Neorickettsia risticii str. Illinois 8220967 YP_003082120.1 CDS era NC_013009.1 866180 867079 R identified by match to protein family HMM PF01926; match to protein family HMM PF07650; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR00436; GTP-binding protein Era complement(866180..867079) Neorickettsia risticii str. Illinois 8220968 YP_003082121.1 CDS fabD NC_013009.1 867185 868120 R identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase complement(867185..868120) Neorickettsia risticii str. Illinois 8220969 YP_003082122.1 CDS NRI_0920 NC_013009.1 868198 869937 R identified by match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM PF08275; match to protein family HMM TIGR01391; DNA primase complement(868198..869937) Neorickettsia risticii str. Illinois 8220970 YP_003082123.1 CDS acpS NC_013009.1 869978 870343 R identified by match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556; holo-ACP synthase complement(869978..870343) Neorickettsia risticii str. Illinois 8220971 YP_003082124.1 CDS NRI_0922 NC_013009.1 870508 871674 D hypothetical protein 870508..871674 Neorickettsia risticii str. Illinois 8220972 YP_003082125.1 CDS dcd NC_013009.1 871867 872415 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(871867..872415) Neorickettsia risticii str. Illinois 8220973 YP_003082126.1 CDS NRI_0924 NC_013009.1 872505 872627 D hypothetical protein 872505..872627 Neorickettsia risticii str. Illinois 8220959 YP_003082127.1 CDS purK NC_013009.1 872886 873914 D identified by match to protein family HMM PF02222; match to protein family HMM PF08443; match to protein family HMM TIGR01161; phosphoribosylaminoimidazole carboxylase, ATPase subunit 872886..873914 Neorickettsia risticii str. Illinois 8220974 YP_003082128.1 CDS NRI_0926 NC_013009.1 873996 874631 R hypothetical protein complement(873996..874631) Neorickettsia risticii str. Illinois 8220975 YP_003082129.1 CDS NRI_0927 NC_013009.1 874710 876107 D identified by match to protein family HMM PF03237; match to protein family HMM TIGR01630; phage protein 874710..876107 Neorickettsia risticii str. Illinois 8220976 YP_003082130.1 CDS hemE NC_013009.1 876519 877487 D identified by match to protein family HMM PF01208; match to protein family HMM TIGR01464; uroporphyrinogen decarboxylase 876519..877487 Neorickettsia risticii str. Illinois 8220977 YP_003082131.1 CDS nadA NC_013009.1 877537 878493 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 877537..878493 Neorickettsia risticii str. Illinois 8220978 YP_003082132.1 CDS coaD NC_013009.1 878510 878995 R identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01510; pantetheine-phosphate adenylyltransferase complement(878510..878995) Neorickettsia risticii str. Illinois 8220979 YP_003082133.1 CDS NRI_0931 NC_013009.1 879000 879824 R hypothetical protein complement(879000..879824) Neorickettsia risticii str. Illinois 8220980 YP_003082134.1 CDS NRI_0932 NC_013009.1 879778 879915 D hypothetical protein 879778..879915 Neorickettsia risticii str. Illinois 8220981 NRI_0091 tRNA NRI_0091 NC_013009.1 82983 83059 R tRNA-Ile complement(82983..83059) Neorickettsia risticii str. Illinois 8220193 NRI_0138 tRNA NRI_0138 NC_013009.1 122761 122835 D tRNA-Thr 122761..122835 Neorickettsia risticii str. Illinois 8220229 NRI_0148 tRNA NRI_0148 NC_013009.1 131716 131786 D tRNA-Cys 131716..131786 Neorickettsia risticii str. Illinois 8220238 NRI_0156 tRNA NRI_0156 NC_013009.1 140464 140551 D tRNA-Leu 140464..140551 Neorickettsia risticii str. Illinois 8220245 NRI_0164 tRNA NRI_0164 NC_013009.1 149465 149536 D tRNA-Gln 149465..149536 Neorickettsia risticii str. Illinois 8220252 NRI_0167 tRNA NRI_0167 NC_013009.1 152138 152210 D tRNA-Phe 152138..152210 Neorickettsia risticii str. Illinois 8220254 NRI_0215 tRNA NRI_0215 NC_013009.1 200631 200707 D tRNA-Ile 200631..200707 Neorickettsia risticii str. Illinois 8220295 NRI_0243 tRNA NRI_0243 NC_013009.1 225673 225746 D tRNA-Met 225673..225746 Neorickettsia risticii str. Illinois 8220329 NRI_0254 tRNA NRI_0254 NC_013009.1 235095 235177 D tRNA-Tyr 235095..235177 Neorickettsia risticii str. Illinois 8220338 NRI_0255 tRNA NRI_0255 NC_013009.1 235186 235259 D tRNA-Gly 235186..235259 Neorickettsia risticii str. Illinois 8220091 NRI_0286 tRNA NRI_0286 NC_013009.1 251534 251606 R tRNA-Lys complement(251534..251606) Neorickettsia risticii str. Illinois 8220363 NRI_0319 tRNA NRI_0319 NC_013009.1 279039 279112 D tRNA-Arg 279039..279112 Neorickettsia risticii str. Illinois 8220405 NRI_0371 tRNA NRI_0371 NC_013009.1 330774 330846 R tRNA-Glu complement(330774..330846) Neorickettsia risticii str. Illinois 8220459 NRI_0374 tRNA NRI_0374 NC_013009.1 331920 331995 R tRNA-Val complement(331920..331995) Neorickettsia risticii str. Illinois 8220461 NRI_0392 tRNA NRI_0392 NC_013009.1 349495 349568 D tRNA-Met 349495..349568 Neorickettsia risticii str. Illinois 8220422 NRI_0409 tRNA NRI_0409 NC_013009.1 365183 365265 D tRNA-Leu 365183..365265 Neorickettsia risticii str. Illinois 8220494 NRI_0451 tRNA NRI_0451 NC_013009.1 405271 405343 R tRNA-His complement(405271..405343) Neorickettsia risticii str. Illinois 8220529 NRI_0509 tRNA NRI_0509 NC_013009.1 471092 471184 D tRNA-Ser 471092..471184 Neorickettsia risticii str. Illinois 8220581 NRI_0528 tRNA NRI_0528 NC_013009.1 493086 493160 D tRNA-Pro 493086..493160 Neorickettsia risticii str. Illinois 8220599 NRI_0540 tRNA NRI_0540 NC_013009.1 504881 504953 R tRNA-Asn complement(504881..504953) Neorickettsia risticii str. Illinois 8220610 NRI_0558 tRNA NRI_0558 NC_013009.1 519106 519188 R tRNA-Leu complement(519106..519188) Neorickettsia risticii str. Illinois 8220639 NRI_0590 tRNA NRI_0590 NC_013009.1 556756 556829 D tRNA-Val 556756..556829 Neorickettsia risticii str. Illinois 8220668 NRI_0601 tRNA NRI_0601 NC_013009.1 565976 566052 D tRNA-Arg 565976..566052 Neorickettsia risticii str. Illinois 8220676 NRI_0662 tRNA NRI_0662 NC_013009.1 623017 623089 R tRNA-Trp complement(623017..623089) Neorickettsia risticii str. Illinois 8220721 NRI_0673 tRNA NRI_0673 NC_013009.1 634605 634677 D tRNA-Thr 634605..634677 Neorickettsia risticii str. Illinois 8220735 NRI_0723 tRNA NRI_0723 NC_013009.1 685904 685987 D tRNA-Leu 685904..685987 Neorickettsia risticii str. Illinois 8220792 NRI_0775 tRNA NRI_0775 NC_013009.1 736927 737002 R tRNA-Arg complement(736927..737002) Neorickettsia risticii str. Illinois 8220836 NRI_0791 tRNA NRI_0791 NC_013009.1 748606 748692 R tRNA-Ser complement(748606..748692) Neorickettsia risticii str. Illinois 8220855 NRI_0795 tRNA NRI_0795 NC_013009.1 752406 752481 D tRNA-Gly 752406..752481 Neorickettsia risticii str. Illinois 8220844 NRI_0803 tRNA NRI_0803 NC_013009.1 758175 758264 D tRNA-Ser 758175..758264 Neorickettsia risticii str. Illinois 8220847 NRI_0816 tRNA NRI_0816 NC_013009.1 770333 770409 D tRNA-Asp 770333..770409 Neorickettsia risticii str. Illinois 8220871 NRI_0844 tRNA NRI_0844 NC_013009.1 803362 803434 R tRNA-Ala complement(803362..803434) Neorickettsia risticii str. Illinois 8220897 NRI_0874 tRNA NRI_0874 NC_013009.1 830304 830377 R tRNA-Arg complement(830304..830377) Neorickettsia risticii str. Illinois 8220913 NRI_16SA rRNA NRI_16SA NC_013009.1 36392 37889 D 16S ribosomal RNA 36392..37889 Neorickettsia risticii str. Illinois 8220136 NRI_5SC rRNA NRI_5SC NC_013009.1 731359 731468 R 5S ribosomal RNA complement(731359..731468) Neorickettsia risticii str. Illinois 8220819 NRI_23SB rRNA NRI_23SB NC_013009.1 731527 734298 R 23S ribosomal RNA complement(731527..734298) Neorickettsia risticii str. Illinois 8220057