-- dump date 20111121_013547 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_505904.1 88608392 3932296 4..774 1 NC_007798.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; ParB family chromosome partitioning protein 774 3932296 NSE_0001 Neorickettsia sennetsu str. Miyayama ParB family chromosome partitioning protein YP_505904.1 4 D 222891 CDS YP_505905.1 88608502 3931348 840..2213 1 NC_007798.1 hypothetical protein 2213 3931348 NSE_0002 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505905.1 840 D 222891 CDS YP_505906.1 88608550 3931729 complement(2237..3580) 1 NC_007798.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 3580 3931729 NSE_0003 Neorickettsia sennetsu str. Miyayama sensor histidine kinase YP_505906.1 2237 R 222891 CDS YP_505907.1 88608480 3932223 3639..4886 1 NC_007798.1 hypothetical protein 4886 3932223 NSE_0004 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505907.1 3639 D 222891 CDS YP_505908.1 88608833 3931701 complement(4930..5937) 1 NC_007798.1 identified by similarity to GB:AAD03802.1; match to protein family HMM PF01547; iron-binding protein 5937 3931701 NSE_0005 Neorickettsia sennetsu str. Miyayama iron-binding protein YP_505908.1 4930 R 222891 CDS YP_505909.1 88608671 3931564 complement(5975..6454) 1 NC_007798.1 identified by similarity to GB:AAS13897.1; match to protein family HMM PF03652; hypothetical protein 6454 3931564 NSE_0006 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505909.1 5975 R 222891 CDS YP_505910.1 88608802 3931856 6618..7808 1 NC_007798.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537; HK97 family phage portal protein 7808 3931856 NSE_0007 Neorickettsia sennetsu str. Miyayama HK97 family phage portal protein YP_505910.1 6618 D 222891 CDS YP_505911.1 88608655 3932185 complement(7908..8162) 1 NC_007798.1 hypothetical protein 8162 3932185 NSE_0008 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505911.1 7908 R 222891 CDS YP_505912.1 88608412 3932194 complement(8215..8763) 1 NC_007798.1 identified by similarity to SP:P06978; match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 8763 pgsA 3932194 pgsA Neorickettsia sennetsu str. Miyayama CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_505912.1 8215 R 222891 CDS YP_505913.1 88608358 3931523 8977..9546 1 NC_007798.1 identified by similarity to SP:P29922; match to protein family HMM PF00499; NADH dehydrogenase I subunit J 9546 nuoJ 3931523 nuoJ Neorickettsia sennetsu str. Miyayama NADH dehydrogenase I subunit J YP_505913.1 8977 D 222891 CDS YP_505914.1 88608862 3931600 9591..9686 1 NC_007798.1 hypothetical protein 9686 3931600 NSE_0011 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505914.1 9591 D 222891 CDS YP_505915.1 88608443 3931381 9774..10073 1 NC_007798.1 identified by similarity to SP:P50940; match to protein family HMM PF00420; NADH dehydrogenase I subunit K 10073 nuoK 3931381 nuoK Neorickettsia sennetsu str. Miyayama NADH dehydrogenase I subunit K YP_505915.1 9774 D 222891 CDS YP_505916.1 88608689 3931789 complement(10242..10412) 1 NC_007798.1 hypothetical protein 10412 3931789 NSE_0013 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505916.1 10242 R 222891 CDS YP_505917.1 88608767 3931770 10355..12322 1 NC_007798.1 identified by similarity to SP:P50939; match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974; NADH dehydrogenase I subunit L 12322 nuoL 3931770 nuoL Neorickettsia sennetsu str. Miyayama NADH dehydrogenase I subunit L YP_505917.1 10355 D 222891 CDS YP_505918.1 88608294 3932256 12467..13072 1 NC_007798.1 identified by match to protein family HMM PF00023; ankyrin repeat-containing protein 13072 3932256 NSE_0015 Neorickettsia sennetsu str. Miyayama ankyrin repeat-containing protein YP_505918.1 12467 D 222891 CDS YP_505919.1 88608023 3931478 complement(13098..14306) 1 NC_007798.1 identified by similarity to SP:P28720; match to protein family HMM PF01702; match to protein family HMM TIGR00430; match to protein family HMM TIGR00449; queuine tRNA-ribosyltransferase 14306 tgt 3931478 tgt Neorickettsia sennetsu str. Miyayama queuine tRNA-ribosyltransferase YP_505919.1 13098 R 222891 CDS YP_505920.1 88608674 3931567 14560..14703 1 NC_007798.1 hypothetical protein 14703 3931567 NSE_0017 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505920.1 14560 D 222891 CDS YP_505921.1 88608792 3931588 complement(14945..15052) 1 NC_007798.1 hypothetical protein 15052 3931588 NSE_0018 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505921.1 14945 R 222891 CDS YP_505922.1 88608598 3932250 complement(15164..17074) 1 NC_007798.1 identified by similarity to SP:P04475; match to protein family HMM PF00012; match to protein family HMM TIGR02350; chaperone protein DnaK 17074 dnaK 3932250 dnaK Neorickettsia sennetsu str. Miyayama chaperone protein DnaK YP_505922.1 15164 R 222891 CDS YP_505923.1 88608581 3932291 17293..18024 1 NC_007798.1 identified by match to protein family HMM PF01416; match to protein family HMM TIGR00071; tRNA pseudouridine synthase A 18024 truA 3932291 truA Neorickettsia sennetsu str. Miyayama tRNA pseudouridine synthase A YP_505923.1 17293 D 222891 CDS YP_505924.1 88608703 3931537 18111..18368 1 NC_007798.1 hypothetical protein 18368 3931537 NSE_0021 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505924.1 18111 D 222891 CDS YP_505925.1 88608828 3931696 18539..18694 1 NC_007798.1 hypothetical protein 18694 3931696 NSE_0022 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505925.1 18539 D 222891 CDS YP_505926.1 88608147 3931447 18761..21073 1 NC_007798.1 hypothetical protein 21073 3931447 NSE_0023 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505926.1 18761 D 222891 CDS YP_505927.1 88608322 3932230 21361..21459 1 NC_007798.1 hypothetical protein 21459 3932230 NSE_0024 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505927.1 21361 D 222891 CDS YP_505928.1 88608498 3931344 complement(21688..22308) 1 NC_007798.1 hypothetical protein 22308 3931344 NSE_0025 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505928.1 21688 R 222891 CDS YP_505929.1 88608704 3931538 complement(22386..22481) 1 NC_007798.1 hypothetical protein 22481 3931538 NSE_0026 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505929.1 22386 R 222891 CDS YP_505930.1 88608045 3932139 complement(22538..23332) 1 NC_007798.1 hypothetical protein 23332 3932139 NSE_0027 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505930.1 22538 R 222891 CDS YP_505931.1 88608746 3931633 23916..24077 1 NC_007798.1 hypothetical protein 24077 3931633 NSE_0028 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505931.1 23916 D 222891 CDS YP_505932.1 88608187 3931754 complement(24139..24783) 1 NC_007798.1 identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697; hypothetical protein 24783 3931754 NSE_0029 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505932.1 24139 R 222891 CDS YP_505933.1 88608507 3931387 complement(24806..24934) 1 NC_007798.1 hypothetical protein 24934 3931387 NSE_0030 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505933.1 24806 R 222891 CDS YP_505934.1 88607996 3931933 complement(25144..26112) 1 NC_007798.1 identified by similarity to SP:P43848; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00878; phosphoribosylformylglycinamidine cyclo-ligase 26112 purM 3931933 purM Neorickettsia sennetsu str. Miyayama phosphoribosylformylglycinamidine cyclo-ligase YP_505934.1 25144 R 222891 CDS YP_505935.1 88608111 3931982 complement(26323..26649) 1 NC_007798.1 identified by similarity to SP:O05260; match to protein family HMM PF00420; Na(+)/H(+) antiporter subunit C 26649 mrpC 3931982 mrpC Neorickettsia sennetsu str. Miyayama Na(+)/H(+) antiporter subunit C YP_505935.1 26323 R 222891 CDS YP_505936.1 88608198 3931668 26665..26796 1 NC_007798.1 hypothetical protein 26796 3931668 NSE_0033 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505936.1 26665 D 222891 CDS YP_505937.1 88608281 3932015 complement(27859..28134) 1 NC_007798.1 monovalent cation/proton antiporter, MnhG/PhaG subunit 28134 3932015 NSE_0035 Neorickettsia sennetsu str. Miyayama monovalent cation/proton antiporter, MnhG/PhaG subunit YP_505937.1 27859 R 222891 CDS YP_505938.1 88608373 3932030 complement(28338..29021) 1 NC_007798.1 identified by similarity to GB:AAS14858.1; match to protein family HMM PF04452; match to protein family HMM TIGR00046; hypothetical protein 29021 3932030 NSE_0036 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505938.1 28338 R 222891 CDS YP_505939.1 88608219 3932053 complement(29092..29208) 1 NC_007798.1 hypothetical protein 29208 3932053 NSE_0037 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505939.1 29092 R 222891 CDS YP_505940.1 88608129 3932121 29541..29843 1 NC_007798.1 identified by similarity to GB:AAS14602.1; hypothetical protein 29843 3932121 NSE_0038 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505940.1 29541 D 222891 CDS YP_505941.1 88608206 3931676 29895..30281 1 NC_007798.1 identified by similarity to SP:P08374; match to protein family HMM TIGR00690; DNA-directed RNA polymerase subunit omega 30281 rpoZ 3931676 rpoZ Neorickettsia sennetsu str. Miyayama DNA-directed RNA polymerase subunit omega YP_505941.1 29895 D 222891 CDS YP_505942.1 88608739 3931626 30303..31214 1 NC_007798.1 identified by similarity to SP:P54575; match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; riboflavin biosynthesis protein RibF 31214 ribF 3931626 ribF Neorickettsia sennetsu str. Miyayama riboflavin biosynthesis protein RibF YP_505942.1 30303 D 222891 CDS YP_505943.1 88608305 3932267 31400..32296 1 NC_007798.1 hypothetical protein 32296 3932267 NSE_0041 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505943.1 31400 D 222891 CDS YP_505944.1 88608009 3931946 complement(32301..34034) 1 NC_007798.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01842; type I secretion system ATPase 34034 3931946 NSE_0042 Neorickettsia sennetsu str. Miyayama type I secretion system ATPase YP_505944.1 32301 R 222891 CDS YP_505945.1 88608759 3931762 34305..35102 1 NC_007798.1 identified by similarity to SP:Q05069; enoyl-(acyl-carrier-protein) reductase 35102 fabI 3931762 fabI Neorickettsia sennetsu str. Miyayama enoyl-(acyl-carrier-protein) reductase YP_505945.1 34305 D 222891 CDS YP_505946.1 88608780 3931576 complement(35160..35378) 1 NC_007798.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683; thiamine biosynthesis protein ThiS 35378 thiS 3931576 thiS Neorickettsia sennetsu str. Miyayama thiamine biosynthesis protein ThiS YP_505946.1 35160 R 222891 CDS YP_505947.1 88608798 3931852 complement(35405..35962) 1 NC_007798.1 hexapeptide transferase family protein 35962 3931852 NSE_0045 Neorickettsia sennetsu str. Miyayama hexapeptide transferase family protein YP_505947.1 35405 R 222891 CDS YP_505948.1 88608119 3932111 37788..38210 1 NC_007798.1 identified by similarity to SP:P10446; match to protein family HMM PF01127; succinate dehydrogenase, cytochrome b556 subunit 38210 sdhC 3932111 sdhC Neorickettsia sennetsu str. Miyayama succinate dehydrogenase, cytochrome b556 subunit YP_505948.1 37788 D 222891 CDS YP_505949.1 88608060 3931807 38207..38536 1 NC_007798.1 identified by similarity to GB:AAC17941.1; putative succinate dehydrogenase, hydrophobic membrane anchor protein 38536 3931807 NSE_0048 Neorickettsia sennetsu str. Miyayama putative succinate dehydrogenase, hydrophobic membrane anchor protein YP_505949.1 38207 D 222891 CDS YP_505950.1 88608193 3931760 38541..40253 1 NC_007798.1 identified by similarity to SP:P35868; match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456; arginyl-tRNA synthetase 40253 argS 3931760 argS Neorickettsia sennetsu str. Miyayama arginyl-tRNA synthetase YP_505950.1 38541 D 222891 CDS YP_505951.1 88608506 3931386 complement(40371..41126) 1 NC_007798.1 identified by match to protein family HMM PF01027; hypothetical protein 41126 3931386 NSE_0050 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505951.1 40371 R 222891 CDS YP_505952.1 88608626 3931430 complement(41241..43679) 1 NC_007798.1 hypothetical protein 43679 3931430 NSE_0051 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505952.1 41241 R 222891 CDS YP_505953.1 88608576 3932286 43984..44202 1 NC_007798.1 identified by similarity to GB:AAS13913.1; hypothetical protein 44202 3932286 NSE_0052 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505953.1 43984 D 222891 CDS YP_505954.1 88608010 3931947 44209..46248 1 NC_007798.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 46248 nuoG 3931947 nuoG Neorickettsia sennetsu str. Miyayama NADH dehydrogenase subunit G YP_505954.1 44209 D 222891 CDS YP_505955.1 88608314 3931707 46226..47236 1 NC_007798.1 identified by match to protein family HMM PF00146; NADH dehydrogenase I subunit H 47236 nuoH 3931707 nuoH Neorickettsia sennetsu str. Miyayama NADH dehydrogenase I subunit H YP_505955.1 46226 D 222891 CDS YP_505956.1 88608109 3931980 47265..47924 1 NC_007798.1 identified by similarity to SP:P27291; match to protein family HMM PF04972; putative osmotically inducible protein 47924 3931980 NSE_0055 Neorickettsia sennetsu str. Miyayama putative osmotically inducible protein YP_505956.1 47265 D 222891 CDS YP_505957.2 161511033 3932165 complement(48009..49421) 1 NC_007798.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 49421 fumC 3932165 fumC Neorickettsia sennetsu str. Miyayama fumarate hydratase YP_505957.2 48009 R 222891 CDS YP_505958.1 88608486 3931805 complement(49726..51999) 1 NC_007798.1 identified by similarity to SP:P05055; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase/polyadenylase 51999 pnp 3931805 pnp Neorickettsia sennetsu str. Miyayama polynucleotide phosphorylase/polyadenylase YP_505958.1 49726 R 222891 CDS YP_505959.1 88608422 3932204 complement(52003..52263) 1 NC_007798.1 identified by similarity to SP:P05766; match to protein family HMM PF00312; match to protein family HMM TIGR00952; 30S ribosomal protein S15 52263 rpsO 3932204 rpsO Neorickettsia sennetsu str. Miyayama 30S ribosomal protein S15 YP_505959.1 52003 R 222891 CDS YP_505960.1 88608580 3932290 complement(52474..53772) 1 NC_007798.1 identified by similarity to SP:P12047; match to protein family HMM PF00206; match to protein family HMM TIGR00928; adenylosuccinate lyase 53772 purB 3932290 purB Neorickettsia sennetsu str. Miyayama adenylosuccinate lyase YP_505960.1 52474 R 222891 CDS YP_505961.1 88607969 3931413 complement(53784..54266) 1 NC_007798.1 identified by similarity to SP:P02418; match to protein family HMM PF01281; match to protein family HMM PF03948; match to protein family HMM TIGR00158; 50S ribosomal protein L9 54266 rplI 3931413 rplI Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L9 YP_505961.1 53784 R 222891 CDS YP_505962.1 88608040 3932134 complement(54279..54500) 1 NC_007798.1 identified by similarity to SP:P02374; match to protein family HMM PF01084; match to protein family HMM TIGR00165; 30S ribosomal protein S18 54500 rpsR 3932134 rpsR Neorickettsia sennetsu str. Miyayama 30S ribosomal protein S18 YP_505962.1 54279 R 222891 CDS YP_505963.1 88608090 3931902 complement(54545..54889) 1 NC_007798.1 identified by similarity to SP:P02358; match to protein family HMM PF01250; match to protein family HMM TIGR00166; 30S ribosomal protein S6 54889 rpsF 3931902 rpsF Neorickettsia sennetsu str. Miyayama 30S ribosomal protein S6 YP_505963.1 54545 R 222891 CDS YP_505964.1 88608594 3932246 55094..56110 1 NC_007798.1 putative phosphate ABC transporter periplasmic phosphate-binding protein 56110 3932246 NSE_0063 Neorickettsia sennetsu str. Miyayama putative phosphate ABC transporter periplasmic phosphate-binding protein YP_505964.1 55094 D 222891 CDS YP_505965.1 88608332 3931833 56119..57312 1 NC_007798.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710; Bcr/CflA subfamily drug resistance transporter 57312 3931833 NSE_0064 Neorickettsia sennetsu str. Miyayama Bcr/CflA subfamily drug resistance transporter YP_505965.1 56119 D 222891 CDS YP_505966.1 88608292 3932026 complement(57339..58232) 1 NC_007798.1 identified by match to protein family HMM PF00892; hypothetical protein 58232 3932026 NSE_0065 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505966.1 57339 R 222891 CDS YP_505967.1 88608037 3931493 58542..59210 1 NC_007798.1 putative lipoprotein 59210 3931493 NSE_0066 Neorickettsia sennetsu str. Miyayama putative lipoprotein YP_505967.1 58542 D 222891 CDS YP_505968.1 88608814 3931868 complement(59313..60632) 1 NC_007798.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 60632 rho 3931868 rho Neorickettsia sennetsu str. Miyayama transcription termination factor Rho YP_505968.1 59313 R 222891 CDS YP_505969.1 88608871 3931609 61185..62690 1 NC_007798.1 identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368; Mg chelatase-like protein 62690 3931609 NSE_0068 Neorickettsia sennetsu str. Miyayama Mg chelatase-like protein YP_505969.1 61185 D 222891 CDS YP_505970.1 88608534 3932099 62874..63071 1 NC_007798.1 hypothetical protein 63071 3932099 NSE_0069 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505970.1 62874 D 222891 CDS YP_505971.1 88608606 3931991 63096..63563 1 NC_007798.1 hypothetical protein 63563 3931991 NSE_0070 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505971.1 63096 D 222891 CDS YP_505972.1 88608204 3931674 63633..63851 1 NC_007798.1 hypothetical protein 63851 3931674 NSE_0071 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505972.1 63633 D 222891 CDS YP_505973.1 88608361 3931526 64070..64426 1 NC_007798.1 hypothetical protein 64426 3931526 NSE_0072 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505973.1 64070 D 222891 CDS YP_505974.1 88608091 3931903 64865..65707 1 NC_007798.1 hypothetical protein 65707 3931903 NSE_0073 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505974.1 64865 D 222891 CDS YP_505975.1 88608868 3931606 complement(65872..66039) 1 NC_007798.1 hypothetical protein 66039 3931606 NSE_0074 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505975.1 65872 R 222891 CDS YP_505976.1 88607957 3932069 66207..66332 1 NC_007798.1 hypothetical protein 66332 3932069 NSE_0075 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505976.1 66207 D 222891 CDS YP_505977.1 88608836 3931704 66473..66592 1 NC_007798.1 hypothetical protein 66592 3931704 NSE_0076 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505977.1 66473 D 222891 CDS YP_505978.1 88608643 3932173 67058..67300 1 NC_007798.1 identified by similarity to GB:BAC12908.1; hypothetical protein 67300 3932173 NSE_0077 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505978.1 67058 D 222891 CDS YP_505979.1 88608450 3932242 complement(67388..68098) 1 NC_007798.1 hypothetical protein 68098 3932242 NSE_0078 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505979.1 67388 R 222891 CDS YP_505980.1 88608483 3931802 complement(68525..68680) 1 NC_007798.1 hypothetical protein 68680 3931802 NSE_0079 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505980.1 68525 R 222891 CDS YP_505981.1 88608393 3932297 complement(68745..69407) 1 NC_007798.1 hypothetical protein 69407 3932297 NSE_0080 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505981.1 68745 R 222891 CDS YP_505982.1 88608259 3931709 69139..69459 1 NC_007798.1 hypothetical protein 69459 3931709 NSE_0081 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505982.1 69139 D 222891 CDS YP_505983.1 88608158 3931497 complement(69894..70040) 1 NC_007798.1 hypothetical protein 70040 3931497 NSE_0082 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505983.1 69894 R 222891 CDS YP_505984.1 88608163 3931502 complement(70325..71089) 1 NC_007798.1 hypothetical protein 71089 3931502 NSE_0083 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505984.1 70325 R 222891 CDS YP_505985.1 88608306 3932268 72068..73534 1 NC_007798.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 73534 gatB 3932268 gatB Neorickettsia sennetsu str. Miyayama aspartyl/glutamyl-tRNA amidotransferase subunit B YP_505985.1 72068 D 222891 CDS YP_505986.1 88608086 3931898 73527..73961 1 NC_007798.1 identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase family protein 73961 3931898 NSE_0085 Neorickettsia sennetsu str. Miyayama cytidine/deoxycytidylate deaminase family protein YP_505986.1 73527 D 222891 CDS YP_505987.1 88607958 3932070 complement(74394..74660) 1 NC_007798.1 hypothetical protein 74660 3932070 NSE_0086 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505987.1 74394 R 222891 CDS YP_505988.1 88608442 3931380 74886..75071 1 NC_007798.1 identified by similarity to GB:AAL93909.1; hypothetical protein 75071 3931380 NSE_0087 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505988.1 74886 D 222891 CDS YP_505989.1 88608078 3931890 75251..75754 1 NC_007798.1 hypothetical protein 75754 3931890 NSE_0088 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505989.1 75251 D 222891 CDS YP_505990.1 88608666 3931559 75827..75967 1 NC_007798.1 hypothetical protein 75967 3931559 NSE_0089 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505990.1 75827 D 222891 CDS YP_505991.1 88608774 3931777 76215..76706 1 NC_007798.1 hypothetical protein 76706 3931777 NSE_0090 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505991.1 76215 D 222891 CDS YP_505992.1 88608521 3931401 76795..76935 1 NC_007798.1 hypothetical protein 76935 3931401 NSE_0091 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505992.1 76795 D 222891 CDS YP_505993.1 88608578 3932288 77129..77680 1 NC_007798.1 hypothetical protein 77680 3932288 NSE_0092 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505993.1 77129 D 222891 CDS YP_505994.1 88608026 3931481 complement(77709..77828) 1 NC_007798.1 hypothetical protein 77828 3931481 NSE_0093 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505994.1 77709 R 222891 CDS YP_505995.1 88608400 3932304 complement(78013..78936) 1 NC_007798.1 identified by similarity to SP:P23882; match to protein family HMM PF00551; match to protein family HMM TIGR00460; methionyl-tRNA formyltransferase 78936 fmt 3932304 fmt Neorickettsia sennetsu str. Miyayama methionyl-tRNA formyltransferase YP_505995.1 78013 R 222891 CDS YP_505996.1 88608514 3931394 79128..79232 1 NC_007798.1 hypothetical protein 79232 3931394 NSE_0096 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505996.1 79128 D 222891 CDS YP_505997.1 88608610 3931995 complement(79285..80091) 1 NC_007798.1 identified by match to protein family HMM PF02540; match to protein family HMM TIGR00552; NAD+ synthetase 80091 nadE 3931995 nadE Neorickettsia sennetsu str. Miyayama NAD+ synthetase YP_505997.1 79285 R 222891 CDS YP_505998.1 88608337 3931839 80101..80190 1 NC_007798.1 hypothetical protein 80190 3931839 NSE_0098 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505998.1 80101 D 222891 CDS YP_505999.1 88607972 3931416 complement(80170..80379) 1 NC_007798.1 hypothetical protein 80379 3931416 NSE_0099 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_505999.1 80170 R 222891 CDS YP_506000.1 88608073 3931621 80625..81254 1 NC_007798.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00214; lipoate-protein ligase B 81254 lipB 3931621 lipB Neorickettsia sennetsu str. Miyayama lipoate-protein ligase B YP_506000.1 80625 D 222891 CDS YP_506001.1 88608670 3931563 81266..81973 1 NC_007798.1 identified by match to protein family HMM PF01509; match to protein family HMM TIGR00431; tRNA pseudouridine synthase B 81973 truB 3931563 truB Neorickettsia sennetsu str. Miyayama tRNA pseudouridine synthase B YP_506001.1 81266 D 222891 CDS YP_506002.1 88608495 3931341 82049..82222 1 NC_007798.1 hypothetical protein 82222 3931341 NSE_0102 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506002.1 82049 D 222891 CDS YP_506003.1 88608609 3931994 82339..82587 1 NC_007798.1 hypothetical protein 82587 3931994 NSE_0103 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506003.1 82339 D 222891 CDS YP_506004.1 88608258 3931618 82597..83676 1 NC_007798.1 hypothetical protein 83676 3931618 NSE_0104 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506004.1 82597 D 222891 CDS YP_506005.1 88608042 3932136 83760..83951 1 NC_007798.1 hypothetical protein 83951 3932136 NSE_0105 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506005.1 83760 D 222891 CDS YP_506006.1 88608854 3931663 complement(83999..84145) 1 NC_007798.1 hypothetical protein 84145 3931663 NSE_0106 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506006.1 83999 R 222891 CDS YP_506007.1 88608727 3932160 84763..85689 1 NC_007798.1 hypothetical protein 85689 3932160 NSE_0107 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506007.1 84763 D 222891 CDS YP_506008.1 88608265 3931715 86211..87413 1 NC_007798.1 hypothetical protein 87413 3931715 NSE_0108 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506008.1 86211 D 222891 CDS YP_506009.1 88608462 3931828 87560..87709 1 NC_007798.1 hypothetical protein 87709 3931828 NSE_0109 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506009.1 87560 D 222891 CDS YP_506010.1 88608006 3931943 87850..88089 1 NC_007798.1 hypothetical protein 88089 3931943 NSE_0110 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506010.1 87850 D 222891 CDS YP_506011.1 88608390 3932294 88421..89233 1 NC_007798.1 hypothetical protein 89233 3932294 NSE_0111 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506011.1 88421 D 222891 CDS YP_506012.1 88608887 3932085 89497..90399 1 NC_007798.1 hypothetical protein 90399 3932085 NSE_0112 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506012.1 89497 D 222891 CDS YP_506013.1 88608496 3931342 90713..91501 1 NC_007798.1 hypothetical protein 91501 3931342 NSE_0113 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506013.1 90713 D 222891 CDS YP_506014.1 88608218 3932052 complement(92049..92297) 1 NC_007798.1 hypothetical protein 92297 3932052 NSE_0114 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506014.1 92049 R 222891 CDS YP_506015.1 88608342 3931844 92233..92964 1 NC_007798.1 hypothetical protein 92964 3931844 NSE_0115 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506015.1 92233 D 222891 CDS YP_506016.1 88608164 3931503 complement(93109..93249) 1 NC_007798.1 hypothetical protein 93249 3931503 NSE_0116 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506016.1 93109 R 222891 CDS YP_506017.1 88608345 3931847 93292..94203 1 NC_007798.1 hypothetical protein 94203 3931847 NSE_0117 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506017.1 93292 D 222891 CDS YP_506018.1 88608453 3931819 94290..94442 1 NC_007798.1 hypothetical protein 94442 3931819 NSE_0118 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506018.1 94290 D 222891 CDS YP_506019.1 88608018 3931955 complement(94667..97231) 1 NC_007798.1 identified by similarity to SP:P03815; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; ClpB protein 97231 clpB 3931955 clpB Neorickettsia sennetsu str. Miyayama ClpB protein YP_506019.1 94667 R 222891 CDS YP_506020.1 88608043 3932137 97557..99206 1 NC_007798.1 identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757; ribonuclease 99206 3932137 NSE_0120 Neorickettsia sennetsu str. Miyayama ribonuclease YP_506020.1 97557 D 222891 CDS YP_506021.1 88608745 3931632 complement(99201..100451) 1 NC_007798.1 hypothetical protein 100451 3931632 NSE_0121 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506021.1 99201 R 222891 CDS YP_506022.1 88608448 3932240 100662..101522 1 NC_007798.1 identified by similarity to SP:O06594; match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; nicotinate-nucleotide pyrophosphorylase 101522 nadC 3932240 nadC Neorickettsia sennetsu str. Miyayama nicotinate-nucleotide pyrophosphorylase YP_506022.1 100662 D 222891 CDS YP_506023.1 88608585 3932034 101663..101920 1 NC_007798.1 identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; 30S ribosomal protein S16 101920 rpsP 3932034 rpsP Neorickettsia sennetsu str. Miyayama 30S ribosomal protein S16 YP_506023.1 101663 D 222891 CDS YP_506024.1 88608189 3931756 101917..102408 1 NC_007798.1 identified by similarity to GB:CAE25687.1; match to protein family HMM PF05239; match to protein family HMM TIGR02273; putative 16S rRNA processing protein RimM 102408 3931756 NSE_0124 Neorickettsia sennetsu str. Miyayama putative 16S rRNA processing protein RimM YP_506024.1 101917 D 222891 CDS YP_506025.1 88608334 3931836 102414..103640 1 NC_007798.1 identified by match to protein family HMM PF02646; RmuC domain-containing protein 103640 3931836 NSE_0125 Neorickettsia sennetsu str. Miyayama RmuC domain-containing protein YP_506025.1 102414 D 222891 CDS YP_506026.1 88608134 3932126 complement(103662..104450) 1 NC_007798.1 identified by similarity to GB:AAS13843.1; hypothetical protein 104450 3932126 NSE_0126 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506026.1 103662 R 222891 CDS YP_506027.1 88608113 3931984 104694..105485 1 NC_007798.1 identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945; Sec-independent protein translocase TatC 105485 tatC 3931984 tatC Neorickettsia sennetsu str. Miyayama Sec-independent protein translocase TatC YP_506027.1 104694 D 222891 CDS YP_506028.1 88608405 3932309 105557..106426 1 NC_007798.1 identified by match to protein family HMM TIGR00536; HemK family modification methylase 106426 3932309 NSE_0128 Neorickettsia sennetsu str. Miyayama HemK family modification methylase YP_506028.1 105557 D 222891 CDS YP_506029.1 88608469 3932212 106580..106714 1 NC_007798.1 hypothetical protein 106714 3932212 NSE_0129 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506029.1 106580 D 222891 CDS YP_506030.1 88608719 3931553 106757..107053 1 NC_007798.1 hypothetical protein 107053 3931553 NSE_0130 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506030.1 106757 D 222891 CDS YP_506031.1 88608054 3932148 complement(107976..109505) 1 NC_007798.1 identified by similarity to SP:P05036; match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM TIGR00962; ATP synthase F1 subunit alpha 109505 atpA 3932148 atpA Neorickettsia sennetsu str. Miyayama ATP synthase F1 subunit alpha YP_506031.1 107976 R 222891 CDS YP_506032.1 88608208 3931678 complement(109516..110040) 1 NC_007798.1 identified by match to protein family HMM PF00213; ATP synthase F1 subunit delta 110040 atpH 3931678 atpH Neorickettsia sennetsu str. Miyayama ATP synthase F1 subunit delta YP_506032.1 109516 R 222891 CDS YP_506033.1 88608505 3931351 complement(110123..110704) 1 NC_007798.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; 5,10-methenyltetrahydrofolate synthetase 110704 3931351 NSE_0133 Neorickettsia sennetsu str. Miyayama 5,10-methenyltetrahydrofolate synthetase YP_506033.1 110123 R 222891 CDS YP_506034.1 88608695 3931795 complement(110751..111257) 1 NC_007798.1 identified by match to protein family HMM PF02542; match to protein family HMM TIGR00151; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 111257 ispF 3931795 ispF Neorickettsia sennetsu str. Miyayama 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_506034.1 110751 R 222891 CDS YP_506035.1 88608866 3931604 complement(111277..111384) 1 NC_007798.1 hypothetical protein 111384 3931604 NSE_0135 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506035.1 111277 R 222891 CDS YP_506036.1 88608320 3932228 111587..112810 1 NC_007798.1 identified by match to protein family HMM PF02687; match to protein family HMM TIGR02212; putative permease 112810 3932228 NSE_0137 Neorickettsia sennetsu str. Miyayama putative permease YP_506036.1 111587 D 222891 CDS YP_506037.1 88607964 3931408 complement(112840..113199) 1 NC_007798.1 identified by similarity to SP:P33643; match to protein family HMM PF00849; putative RNA pseudouridylate synthase, truncation 113199 3931408 NSE_0138 Neorickettsia sennetsu str. Miyayama putative RNA pseudouridylate synthase, truncation YP_506037.1 112840 R 222891 CDS YP_506038.1 88608287 3932021 113279..113458 1 NC_007798.1 hypothetical protein 113458 3932021 NSE_0139 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506038.1 113279 D 222891 CDS YP_506039.1 88608389 3932293 113711..114274 1 NC_007798.1 hypothetical protein 114274 3932293 NSE_0140 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506039.1 113711 D 222891 CDS YP_506040.1 88608762 3931765 114344..114436 1 NC_007798.1 hypothetical protein 114436 3931765 NSE_0141 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506040.1 114344 D 222891 CDS YP_506041.1 88608459 3931825 complement(114546..115502) 1 NC_007798.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase 115502 3931825 NSE_0142 Neorickettsia sennetsu str. Miyayama fructose-bisphosphate aldolase YP_506041.1 114546 R 222891 CDS YP_506042.1 88608029 3931484 115592..115747 1 NC_007798.1 hypothetical protein 115747 3931484 NSE_0143 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506042.1 115592 D 222891 CDS YP_506043.1 88608752 3931639 115865..116782 1 NC_007798.1 identified by similarity to SP:P21891; match to protein family HMM PF00589; match to protein family HMM PF02899; tyrosine recombinase XerD 116782 xerD 3931639 xerD Neorickettsia sennetsu str. Miyayama tyrosine recombinase XerD YP_506043.1 115865 D 222891 CDS YP_506044.1 88608726 3932159 116994..118001 1 NC_007798.1 hypothetical protein 118001 3932159 NSE_0145 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506044.1 116994 D 222891 CDS YP_506045.1 88608012 3931949 118090..119082 1 NC_007798.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase A 119082 3931949 NSE_0146 Neorickettsia sennetsu str. Miyayama ribosomal large subunit pseudouridine synthase A YP_506045.1 118090 D 222891 CDS YP_506046.1 88608706 3931540 119358..119576 1 NC_007798.1 hypothetical protein 119576 3931540 NSE_0147 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506046.1 119358 D 222891 CDS YP_506047.1 88607988 3931925 119593..119769 1 NC_007798.1 hypothetical protein 119769 3931925 NSE_0148 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506047.1 119593 D 222891 CDS YP_506048.1 88608137 3931967 complement(120306..120440) 1 NC_007798.1 hypothetical protein 120440 3931967 NSE_0149 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506048.1 120306 R 222891 CDS YP_506049.1 88608363 3932040 120679..121725 1 NC_007798.1 identified by match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 121725 3932040 NSE_0151 Neorickettsia sennetsu str. Miyayama RND family efflux transporter MFP subunit YP_506049.1 120679 D 222891 CDS YP_506050.1 88608565 3932275 121676..121906 1 NC_007798.1 hypothetical protein 121906 3932275 NSE_0152 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506050.1 121676 D 222891 CDS YP_506051.1 88607987 3931924 121791..123128 1 NC_007798.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium:alanine symporter family protein 123128 3931924 NSE_0153 Neorickettsia sennetsu str. Miyayama sodium:alanine symporter family protein YP_506051.1 121791 D 222891 CDS YP_506052.1 88608169 3931508 123195..124511 1 NC_007798.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR00857; dihydroorotase, multifunctional complex type 124511 pyrC 3931508 pyrC Neorickettsia sennetsu str. Miyayama dihydroorotase, multifunctional complex type YP_506052.1 123195 D 222891 CDS YP_506053.1 88608728 3932161 124558..124707 1 NC_007798.1 hypothetical protein 124707 3932161 NSE_0155 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506053.1 124558 D 222891 CDS YP_506054.1 88608446 3931384 complement(124722..127268) 1 NC_007798.1 identified by similarity to SP:P00957; match to protein family HMM PF01411; match to protein family HMM PF07973; match to protein family HMM TIGR00344; alanyl-tRNA synthetase 127268 alaS 3931384 alaS Neorickettsia sennetsu str. Miyayama alanyl-tRNA synthetase YP_506054.1 124722 R 222891 CDS YP_506055.1 88608464 3931830 complement(127381..127530) 1 NC_007798.1 hypothetical protein 127530 3931830 NSE_0157 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506055.1 127381 R 222891 CDS YP_506056.1 88608263 3931713 127556..129157 1 NC_007798.1 identified by similarity to SP:P72958; putative transporter 129157 3931713 NSE_0158 Neorickettsia sennetsu str. Miyayama putative transporter YP_506056.1 127556 D 222891 CDS YP_506057.1 88608197 3931667 complement(129072..129254) 1 NC_007798.1 hypothetical protein 129254 3931667 NSE_0159 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506057.1 129072 R 222891 CDS YP_506058.1 88608100 3931971 complement(129456..130067) 1 NC_007798.1 identified by similarity to SP:P30964; CcmB-like protein 130067 3931971 NSE_0161 Neorickettsia sennetsu str. Miyayama CcmB-like protein YP_506058.1 129456 R 222891 CDS YP_506059.1 88608429 3931367 130140..130553 1 NC_007798.1 identified by similarity to SP:P18274; match to protein family HMM PF01258; DnaK suppressor protein 130553 dksA 3931367 dksA Neorickettsia sennetsu str. Miyayama DnaK suppressor protein YP_506059.1 130140 D 222891 CDS YP_506060.1 88608520 3931400 130622..131500 1 NC_007798.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 131500 thyX 3931400 thyX Neorickettsia sennetsu str. Miyayama FAD-dependent thymidylate synthase YP_506060.1 130622 D 222891 CDS YP_506061.1 88608650 3932180 131617..132660 1 NC_007798.1 identified by similarity to SP:P25662; match to protein family HMM PF01145; match to protein family HMM TIGR01933; HflK protein 132660 hflK 3932180 hflK Neorickettsia sennetsu str. Miyayama HflK protein YP_506061.1 131617 D 222891 CDS YP_506062.1 88608777 3931780 132657..133517 1 NC_007798.1 identified by similarity to SP:P25661; match to protein family HMM PF01145; match to protein family HMM TIGR01932; HflC protein 133517 hflC 3931780 hflC Neorickettsia sennetsu str. Miyayama HflC protein YP_506062.1 132657 D 222891 CDS YP_506063.1 88608224 3932058 133504..134925 1 NC_007798.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; periplasmic serine protease 134925 3932058 NSE_0166 Neorickettsia sennetsu str. Miyayama periplasmic serine protease YP_506063.1 133504 D 222891 CDS YP_506064.1 88608539 3932104 134937..138170 1 NC_007798.1 identified by similarity to SP:P10443; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594; DNA polymerase III subunit alpha 138170 dnaE 3932104 dnaE Neorickettsia sennetsu str. Miyayama DNA polymerase III subunit alpha YP_506064.1 134937 D 222891 CDS YP_506065.1 88608112 3931983 complement(138386..139495) 1 NC_007798.1 identified by match to protein family HMM PF01713; Smr domain-containing protein 139495 3931983 NSE_0169 Neorickettsia sennetsu str. Miyayama Smr domain-containing protein YP_506065.1 138386 R 222891 CDS YP_506066.1 88608357 3931522 139761..140879 1 NC_007798.1 identified by similarity to SP:P00583; match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663; DNA polymerase III subunit beta 140879 dnaN 3931522 dnaN Neorickettsia sennetsu str. Miyayama DNA polymerase III subunit beta YP_506066.1 139761 D 222891 CDS YP_506067.1 88607979 3931423 complement(141195..142610) 1 NC_007798.1 catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 142610 3931423 NSE_0172 Neorickettsia sennetsu str. Miyayama isocitrate dehydrogenase YP_506067.1 141195 R 222891 CDS YP_506068.1 88608532 3932097 142696..143610 1 NC_007798.1 identified by match to protein family HMM PF03547; putative transporter 143610 3932097 NSE_0173 Neorickettsia sennetsu str. Miyayama putative transporter YP_506068.1 142696 D 222891 CDS YP_506069.1 88608195 3931665 complement(143828..143965) 1 NC_007798.1 hypothetical protein 143965 3931665 NSE_0174 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506069.1 143828 R 222891 CDS YP_506070.1 88607993 3931930 143960..145231 1 NC_007798.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 145231 3931930 NSE_0175 Neorickettsia sennetsu str. Miyayama M16 family peptidase YP_506070.1 143960 D 222891 CDS YP_506071.1 88608110 3931981 145277..145843 1 NC_007798.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 145843 hslV 3931981 hslV Neorickettsia sennetsu str. Miyayama ATP-dependent protease peptidase subunit YP_506071.1 145277 D 222891 CDS YP_506072.1 88607962 3931406 145864..147282 1 NC_007798.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 147282 hslU 3931406 hslU Neorickettsia sennetsu str. Miyayama ATP-dependent protease ATP-binding subunit HslU YP_506072.1 145864 D 222891 CDS YP_506073.1 88608617 3932002 147285..147983 1 NC_007798.1 identified by match to protein family HMM PF01128; putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 147983 3932002 NSE_0178 Neorickettsia sennetsu str. Miyayama putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_506073.1 147285 D 222891 CDS YP_506074.1 88608290 3932024 148110..149156 1 NC_007798.1 identified by match to protein family HMM PF01180; match to protein family HMM TIGR01036; dihydroorotate dehydrogenase 149156 pyrD 3932024 pyrD Neorickettsia sennetsu str. Miyayama dihydroorotate dehydrogenase YP_506074.1 148110 D 222891 CDS YP_506075.1 88608786 3931582 complement(149374..150681) 1 NC_007798.1 identified by similarity to SP:P20691; match to protein family HMM PF00275; putative 3-phosphoshikimate 1-carboxyvinyltransferase 150681 3931582 NSE_0180 Neorickettsia sennetsu str. Miyayama putative 3-phosphoshikimate 1-carboxyvinyltransferase YP_506075.1 149374 R 222891 CDS YP_506076.1 88608654 3932184 complement(150943..153774) 1 NC_007798.1 hypothetical protein 153774 3932184 NSE_0181 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506076.1 150943 R 222891 CDS YP_506077.1 88608028 3931483 complement(153764..153916) 1 NC_007798.1 hypothetical protein 153916 3931483 NSE_0182 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506077.1 153764 R 222891 CDS YP_506078.1 88608824 3931692 complement(153913..154260) 1 NC_007798.1 hypothetical protein 154260 3931692 NSE_0183 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506078.1 153913 R 222891 CDS YP_506079.1 88608490 3932132 154343..154555 1 NC_007798.1 hypothetical protein 154555 3932132 NSE_0184 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506079.1 154343 D 222891 CDS YP_506080.1 88608740 3931627 complement(154794..156266) 1 NC_007798.1 identified by similarity to SP:P15639; match to protein family HMM PF01808; match to protein family HMM PF02142; match to protein family HMM TIGR00355; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 156266 purH 3931627 purH Neorickettsia sennetsu str. Miyayama phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_506080.1 154794 R 222891 CDS YP_506081.1 88608203 3931673 complement(156485..157459) 1 NC_007798.1 identified by similarity to SP:P04425; glutathione synthetase 157459 gshB 3931673 gshB Neorickettsia sennetsu str. Miyayama glutathione synthetase YP_506081.1 156485 R 222891 CDS YP_506082.1 88608427 3932209 157785..157961 1 NC_007798.1 hypothetical protein 157961 3932209 NSE_0187 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506082.1 157785 D 222891 CDS YP_506083.1 88608857 3931595 157995..158174 1 NC_007798.1 hypothetical protein 158174 3931595 NSE_0188 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506083.1 157995 D 222891 CDS YP_506084.1 88608349 3931851 158171..159568 1 NC_007798.1 identified by similarity to GB:CAE09398.1; match to protein family HMM PF03060; hypothetical protein 159568 3931851 NSE_0189 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506084.1 158171 D 222891 CDS YP_506085.1 88608364 3931528 complement(159745..160416) 1 NC_007798.1 identified by similarity to GB:AAR38359.1; hypothetical protein 160416 3931528 NSE_0190 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506085.1 159745 R 222891 CDS YP_506086.1 88608019 3931956 complement(160394..161377) 1 NC_007798.1 identified by similarity to SP:P77406; match to protein family HMM PF01594; PerM family permease 161377 3931956 NSE_0191 Neorickettsia sennetsu str. Miyayama PerM family permease YP_506086.1 160394 R 222891 CDS YP_506087.1 88608540 3932105 complement(161491..164568) 1 NC_007798.1 identified by match to protein family HMM PF00873; AcrB/AcrD/AcrF family transporter 164568 3932105 NSE_0192 Neorickettsia sennetsu str. Miyayama AcrB/AcrD/AcrF family transporter YP_506087.1 161491 R 222891 CDS YP_506088.1 88608748 3931635 complement(164597..164830) 1 NC_007798.1 hypothetical protein 164830 3931635 NSE_0193 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506088.1 164597 R 222891 CDS YP_506089.1 88608791 3931587 complement(164808..166199) 1 NC_007798.1 identified by similarity to SP:P00497; match to protein family HMM PF00156; match to protein family HMM PF00310; match to protein family HMM TIGR01134; amidophosphoribosyltransferase 166199 purF 3931587 purF Neorickettsia sennetsu str. Miyayama amidophosphoribosyltransferase YP_506089.1 164808 R 222891 CDS YP_506090.1 88608592 3932244 complement(166240..166632) 1 NC_007798.1 hypothetical protein 166632 3932244 NSE_0195 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506090.1 166240 R 222891 CDS YP_506091.1 88608413 3932195 complement(166629..167204) 1 NC_007798.1 identified by match to protein family HMM PF01132; translation elongation factor P 167204 efp 3932195 efp Neorickettsia sennetsu str. Miyayama translation elongation factor P YP_506091.1 166629 R 222891 CDS YP_506092.1 88608056 3932150 complement(167307..167705) 1 NC_007798.1 putative lipoprotein 167705 3932150 NSE_0197 Neorickettsia sennetsu str. Miyayama putative lipoprotein YP_506092.1 167307 R 222891 CDS YP_506093.1 88608156 3931495 167974..169122 1 NC_007798.1 identified by similarity to GB:AAL95344.1; putative transporter 169122 3931495 NSE_0198 Neorickettsia sennetsu str. Miyayama putative transporter YP_506093.1 167974 D 222891 CDS YP_506094.1 88608256 3931616 169119..170168 1 NC_007798.1 identified by similarity to SP:P49999; putative DNA replication and repair protein RecF 170168 3931616 NSE_0199 Neorickettsia sennetsu str. Miyayama putative DNA replication and repair protein RecF YP_506094.1 169119 D 222891 CDS YP_506095.1 88608057 3932151 170382..170612 1 NC_007798.1 hypothetical protein 170612 3932151 NSE_0200 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506095.1 170382 D 222891 CDS YP_506096.1 88608384 3931359 170642..171238 1 NC_007798.1 identified by match to protein family HMM PF01170; match to protein family HMM PF03602; match to protein family HMM TIGR00095; putative methyltransferase 171238 3931359 NSE_0201 Neorickettsia sennetsu str. Miyayama putative methyltransferase YP_506096.1 170642 D 222891 CDS YP_506097.1 88608074 3931622 171372..171632 1 NC_007798.1 identified by match to protein family HMM PF01722; BolA family protein 171632 3931622 NSE_0202 Neorickettsia sennetsu str. Miyayama BolA family protein YP_506097.1 171372 D 222891 CDS YP_506098.1 88608714 3931548 171654..171974 1 NC_007798.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365; glutaredoxin-like protein 171974 3931548 NSE_0203 Neorickettsia sennetsu str. Miyayama glutaredoxin-like protein YP_506098.1 171654 D 222891 CDS YP_506099.1 88608803 3931857 complement(172059..173033) 1 NC_007798.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter permease PstC 173033 pstC 3931857 pstC Neorickettsia sennetsu str. Miyayama phosphate ABC transporter permease PstC YP_506099.1 172059 R 222891 CDS YP_506100.1 88608861 3931599 173274..174215 1 NC_007798.1 hypothetical protein 174215 3931599 NSE_0205 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506100.1 173274 D 222891 CDS YP_506101.1 88608231 3932065 174366..176495 1 NC_007798.1 identified by similarity to SP:P94461; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00595; primosomal protein N' 176495 priA 3932065 priA Neorickettsia sennetsu str. Miyayama primosomal protein N' YP_506101.1 174366 D 222891 CDS YP_506102.1 88608562 3931741 176511..176684 1 NC_007798.1 hypothetical protein 176684 3931741 NSE_0207 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506102.1 176511 D 222891 CDS YP_506103.1 88608465 3931831 176762..177796 1 NC_007798.1 hypothetical protein 177796 3931831 NSE_0208 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506103.1 176762 D 222891 CDS YP_506104.1 88608821 3931689 complement(177802..178398) 1 NC_007798.1 identified by match to protein family HMM PF06055; exopolysaccharide synthesis protein 178398 3931689 NSE_0209 Neorickettsia sennetsu str. Miyayama exopolysaccharide synthesis protein YP_506104.1 177802 R 222891 CDS YP_506105.1 88608055 3932149 complement(178418..179218) 1 NC_007798.1 identified by similarity to GB:AAM00415.1; match to protein family HMM PF03524; type IV secretion system protein VirB9 179218 virB9-1 3932149 virB9-1 Neorickettsia sennetsu str. Miyayama type IV secretion system protein VirB9 YP_506105.1 178418 R 222891 CDS YP_506106.1 88607971 3931415 complement(179202..179849) 1 NC_007798.1 identified by similarity to GB:AAS14504.1; type IV secretion system protein VirB8 179849 virB8-1 3931415 virB8-1 Neorickettsia sennetsu str. Miyayama type IV secretion system protein VirB8 YP_506106.1 179202 R 222891 CDS YP_506107.1 88608234 3931456 179931..180494 1 NC_007798.1 identified by match to protein family HMM PF01025; co-chaperone GrpE 180494 grpE 3931456 grpE Neorickettsia sennetsu str. Miyayama co-chaperone GrpE YP_506107.1 179931 D 222891 CDS YP_506108.1 88608758 3931645 180524..181516 1 NC_007798.1 identified by similarity to SP:P00953; match to protein family HMM PF00579; match to protein family HMM TIGR00233; tryptophanyl-tRNA synthetase 181516 trpS 3931645 trpS Neorickettsia sennetsu str. Miyayama tryptophanyl-tRNA synthetase YP_506108.1 180524 D 222891 CDS YP_506109.1 88608877 3932075 181579..181785 1 NC_007798.1 50S ribosomal protein L35 181785 3932075 NSE_0214 Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L35 YP_506109.1 181579 D 222891 CDS YP_506110.1 88608583 3931364 181799..182152 1 NC_007798.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 182152 rplT 3931364 rplT Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L20 YP_506110.1 181799 D 222891 CDS YP_506111.1 88608710 3931544 182149..183126 1 NC_007798.1 identified by similarity to SP:P08312; match to protein family HMM PF01409; match to protein family HMM TIGR00468; phenylalanyl-tRNA synthetase subunit alpha 183126 pheS 3931544 pheS Neorickettsia sennetsu str. Miyayama phenylalanyl-tRNA synthetase subunit alpha YP_506111.1 182149 D 222891 CDS YP_506112.1 88608285 3932019 183158..183616 1 NC_007798.1 identified by similarity to SP:P37351; match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120; ribose 5-phosphate isomerase B 183616 rpiB 3932019 rpiB Neorickettsia sennetsu str. Miyayama ribose 5-phosphate isomerase B YP_506112.1 183158 D 222891 CDS YP_506113.1 88608618 3932003 183588..184847 1 NC_007798.1 identified by similarity to SP:P34895; match to protein family HMM PF00155; match to protein family HMM PF00464; match to protein family HMM PF01212; serine hydroxymethyltransferase 184847 glyA 3932003 glyA Neorickettsia sennetsu str. Miyayama serine hydroxymethyltransferase YP_506113.1 183588 D 222891 CDS YP_506114.1 88608411 3932193 complement(184859..185128) 1 NC_007798.1 hypothetical protein 185128 3932193 NSE_0219 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506114.1 184859 R 222891 CDS YP_506115.1 88608790 3931586 185240..185884 1 NC_007798.1 identified by similarity to SP:P71350; match to protein family HMM PF02581; putative thiamine-phosphate pyrophosphorylase 185884 3931586 NSE_0220 Neorickettsia sennetsu str. Miyayama putative thiamine-phosphate pyrophosphorylase YP_506115.1 185240 D 222891 CDS YP_506116.1 88608679 3931572 185965..186066 1 NC_007798.1 hypothetical protein 186066 3931572 NSE_0221 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506116.1 185965 D 222891 CDS YP_506117.1 88608549 3931728 186097..189318 1 NC_007798.1 identified by similarity to SP:P38100; match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369; carbamoyl-phosphate synthase large subunit 189318 carB 3931728 carB Neorickettsia sennetsu str. Miyayama carbamoyl-phosphate synthase large subunit YP_506117.1 186097 D 222891 CDS YP_506118.1 88608439 3931377 189556..190989 1 NC_007798.1 identified by similarity to SP:P46473; match to protein family HMM PF01523; TldD protein 190989 tldD 3931377 tldD Neorickettsia sennetsu str. Miyayama TldD protein YP_506118.1 189556 D 222891 CDS YP_506119.1 88608367 3931531 191077..192330 1 NC_007798.1 identified by match to protein family HMM PF00709; adenylosuccinate synthetase 192330 purA 3931531 purA Neorickettsia sennetsu str. Miyayama adenylosuccinate synthetase YP_506119.1 191077 D 222891 CDS YP_506120.1 88608176 3931743 192474..193121 1 NC_007798.1 putative phosphatidylglycerophosphatase A 193121 3931743 NSE_0226 Neorickettsia sennetsu str. Miyayama putative phosphatidylglycerophosphatase A YP_506120.1 192474 D 222891 CDS YP_506121.1 88608181 3931748 complement(193229..193567) 1 NC_007798.1 identified by similarity to SP:P33636; match to protein family HMM PF00085; thioredoxin 193567 3931748 NSE_0227 Neorickettsia sennetsu str. Miyayama thioredoxin YP_506121.1 193229 R 222891 CDS YP_506122.1 88608564 3932274 complement(193716..194720) 1 NC_007798.1 identified by similarity to SP:P46919; match to protein family HMM PF01210; match to protein family HMM PF07479; glycerol-3-phosphate dehydrogenase 194720 gpsA 3932274 gpsA Neorickettsia sennetsu str. Miyayama glycerol-3-phosphate dehydrogenase YP_506122.1 193716 R 222891 CDS YP_506123.1 88608186 3931753 complement(194766..195476) 1 NC_007798.1 identified by similarity to SP:P25531; match to protein family HMM PF04002; match to protein family HMM TIGR00608; DNA repair protein RadC 195476 radC 3931753 radC Neorickettsia sennetsu str. Miyayama DNA repair protein RadC YP_506123.1 194766 R 222891 CDS YP_506124.1 88608440 3931378 complement(195578..196012) 1 NC_007798.1 identified by match to protein family HMM PF01381; DNA-binding protein 196012 3931378 NSE_0230 Neorickettsia sennetsu str. Miyayama DNA-binding protein YP_506124.1 195578 R 222891 CDS YP_506125.1 88608558 3931737 complement(196052..196177) 1 NC_007798.1 hypothetical protein 196177 3931737 NSE_0231 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506125.1 196052 R 222891 CDS YP_506126.1 88608684 3931784 complement(196288..198702) 1 NC_007798.1 identified by match to protein family HMM PF00271; match to protein family HMM PF01043; match to protein family HMM PF07516; match to protein family HMM PF07517; match to protein family HMM TIGR00963; preprotein translocase subunit SecA 198702 secA 3931784 secA Neorickettsia sennetsu str. Miyayama preprotein translocase subunit SecA YP_506126.1 196288 R 222891 CDS YP_506127.1 88608235 3931457 198879..199037 1 NC_007798.1 hypothetical protein 199037 3931457 NSE_0233 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506127.1 198879 D 222891 CDS YP_506128.1 88608551 3931730 199190..199987 1 NC_007798.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 199987 3931730 NSE_0234 Neorickettsia sennetsu str. Miyayama DNA-binding response regulator YP_506128.1 199190 D 222891 CDS YP_506129.1 88608847 3931656 complement(200085..200564) 1 NC_007798.1 identified by similarity to SP:P09028; match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase, catalytic subunit 200564 purE 3931656 purE Neorickettsia sennetsu str. Miyayama phosphoribosylaminoimidazole carboxylase, catalytic subunit YP_506129.1 200085 R 222891 CDS YP_506130.1 88608749 3931636 complement(200705..201694) 1 NC_007798.1 identified by similarity to SP:P36175; match to protein family HMM PF00814; match to protein family HMM TIGR00329; metalloendopeptidase glycoprotease family 201694 3931636 NSE_0236 Neorickettsia sennetsu str. Miyayama metalloendopeptidase glycoprotease family YP_506130.1 200705 R 222891 CDS YP_506131.1 88608161 3931500 complement(201691..202701) 1 NC_007798.1 identified by match to protein family HMM TIGR02122; TRAP transporter solute receptor TAXI family protein 202701 3931500 NSE_0237 Neorickettsia sennetsu str. Miyayama TRAP transporter solute receptor TAXI family protein YP_506131.1 201691 R 222891 CDS YP_506132.1 88607961 3932073 202982..203947 1 NC_007798.1 identified by match to protein family HMM PF00348; polyprenyl synthetase family protein 203947 3932073 NSE_0238 Neorickettsia sennetsu str. Miyayama polyprenyl synthetase family protein YP_506132.1 202982 D 222891 CDS YP_506133.1 88608317 3932225 complement(204022..204126) 1 NC_007798.1 hypothetical protein 204126 3932225 NSE_0239 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506133.1 204022 R 222891 CDS YP_506134.1 88608664 3931557 204135..205076 1 NC_007798.1 identified by match to protein family HMM PF01925; hypothetical protein 205076 3931557 NSE_0240 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506134.1 204135 D 222891 CDS YP_506135.1 88608484 3931803 205073..205816 1 NC_007798.1 identified by similarity to GB:CAC45110.1; hypothetical protein 205816 3931803 NSE_0241 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506135.1 205073 D 222891 CDS YP_506136.1 88608614 3931999 complement(205891..207426) 1 NC_007798.1 identified by similarity to GB:AAB46982.1; 51 kDa major antigen 207426 3931999 NSE_0242 Neorickettsia sennetsu str. Miyayama 51 kDa major antigen YP_506136.1 205891 R 222891 CDS YP_506137.1 88608275 3932009 complement(207469..207597) 1 NC_007798.1 hypothetical protein 207597 3932009 NSE_0243 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506137.1 207469 R 222891 CDS YP_506138.1 88608426 3932208 complement(207575..207769) 1 NC_007798.1 hypothetical protein 207769 3932208 NSE_0244 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506138.1 207575 R 222891 CDS YP_506139.1 88607959 3932071 complement(207848..209257) 1 NC_007798.1 hypothetical protein 209257 3932071 NSE_0245 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506139.1 207848 R 222891 CDS YP_506140.1 88608856 3931594 complement(209356..210006) 1 NC_007798.1 identified by similarity to SP:P20625; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III 210006 nth 3931594 nth Neorickettsia sennetsu str. Miyayama endonuclease III YP_506140.1 209356 R 222891 CDS YP_506141.1 88608529 3932094 complement(210080..210817) 1 NC_007798.1 identified by similarity to SP:Q48269; match to protein family HMM PF01066; putative CDP-diacylglycerol--serine O-phosphatidyltransferase 210817 3932094 NSE_0247 Neorickettsia sennetsu str. Miyayama putative CDP-diacylglycerol--serine O-phosphatidyltransferase YP_506141.1 210080 R 222891 CDS YP_506142.1 88608573 3932283 complement(210824..211501) 1 NC_007798.1 identified by match to protein family HMM PF02666; match to protein family HMM TIGR00164; phosphatidylserine decarboxylase-like protein 211501 3932283 NSE_0248 Neorickettsia sennetsu str. Miyayama phosphatidylserine decarboxylase-like protein YP_506142.1 210824 R 222891 CDS YP_506143.1 88608284 3932018 complement(211566..211997) 1 NC_007798.1 identified by similarity to SP:Q8YEA4; match to protein family HMM PF02130; match to protein family HMM TIGR00043; hypothetical protein 211997 3932018 NSE_0249 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506143.1 211566 R 222891 CDS YP_506144.1 88608406 3932035 complement(212197..213069) 1 NC_007798.1 identified by match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019; succinyl-CoA synthetase subunit alpha 213069 sucD 3932035 sucD Neorickettsia sennetsu str. Miyayama succinyl-CoA synthetase subunit alpha YP_506144.1 212197 R 222891 CDS YP_506145.1 88608589 3931912 complement(213069..214247) 1 NC_007798.1 identified by similarity to SP:P80886; match to protein family HMM PF00549; match to protein family HMM PF02222; match to protein family HMM TIGR01016; succinyl-CoA synthetase subunit beta 214247 sucC 3931912 sucC Neorickettsia sennetsu str. Miyayama succinyl-CoA synthetase subunit beta YP_506145.1 213069 R 222891 CDS YP_506146.1 88608097 3932042 214520..215461 1 NC_007798.1 identified by similarity to SP:P77785; match to protein family HMM PF02769; match to protein family HMM TIGR01379; thiamine-monophosphate kinase 215461 thiL 3932042 thiL Neorickettsia sennetsu str. Miyayama thiamine-monophosphate kinase YP_506146.1 214520 D 222891 CDS YP_506147.1 88608298 3932260 215641..216366 1 NC_007798.1 identified by match to protein family HMM PF00121; match to protein family HMM TIGR00419; triosephosphate isomerase 216366 tpiA 3932260 tpiA Neorickettsia sennetsu str. Miyayama triosephosphate isomerase YP_506147.1 215641 D 222891 CDS YP_506148.1 88607981 3931425 216393..217301 1 NC_007798.1 identified by match to protein family HMM PF00581; rhodanese domain-containing protein 217301 3931425 NSE_0255 Neorickettsia sennetsu str. Miyayama rhodanese domain-containing protein YP_506148.1 216393 D 222891 CDS YP_506149.1 88608215 3932049 217455..218903 1 NC_007798.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 218903 gatA 3932049 gatA Neorickettsia sennetsu str. Miyayama aspartyl/glutamyl-tRNA amidotransferase subunit A YP_506149.1 217455 D 222891 CDS YP_506150.1 88608343 3931845 218995..219174 1 NC_007798.1 identified by similarity to SP:P02436; match to protein family HMM PF00471; match to protein family HMM TIGR01023; 50S ribosomal protein L33 219174 rpmG 3931845 rpmG Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L33 YP_506150.1 218995 D 222891 CDS YP_506151.1 88608456 3931822 219190..219735 1 NC_007798.1 involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 219735 ctaG 3931822 ctaG Neorickettsia sennetsu str. Miyayama cytochrome C oxidase assembly protein YP_506151.1 219190 D 222891 CDS YP_506152.1 88608587 3931910 220315..221739 1 NC_007798.1 identified by similarity to SP:P03004; match to protein family HMM PF00308; match to protein family HMM TIGR00362; chromosomal replication initiator protein DnaA 221739 dnaA 3931910 dnaA Neorickettsia sennetsu str. Miyayama chromosomal replication initiator protein DnaA YP_506152.1 220315 D 222891 CDS YP_506153.1 88608511 3931391 221807..222811 1 NC_007798.1 identified by similarity to SP:Q56732; match to protein family HMM PF01118; match to protein family HMM PF02774; aspartate-semialdehyde dehydrogenase 222811 asd 3931391 asd Neorickettsia sennetsu str. Miyayama aspartate-semialdehyde dehydrogenase YP_506153.1 221807 D 222891 CDS YP_506154.1 88608607 3931992 222878..223009 1 NC_007798.1 hypothetical protein 223009 3931992 NSE_0261 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506154.1 222878 D 222891 CDS YP_506155.1 88608166 3931505 complement(223091..223822) 1 NC_007798.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; RNA methyltransferase 223822 3931505 NSE_0262 Neorickettsia sennetsu str. Miyayama RNA methyltransferase YP_506155.1 223091 R 222891 CDS YP_506156.1 88607994 3931931 224149..224460 1 NC_007798.1 identified by match to protein family HMM PF00338; match to protein family HMM TIGR01049; 30S ribosomal protein S10 224460 rpsJ 3931931 rpsJ Neorickettsia sennetsu str. Miyayama 30S ribosomal protein S10 YP_506156.1 224149 D 222891 CDS YP_506157.1 88608492 3931338 224453..225085 1 NC_007798.1 identified by similarity to SP:P02386; match to protein family HMM PF00297; 50S ribosomal protein L3 225085 rplC 3931338 rplC Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L3 YP_506157.1 224453 D 222891 CDS YP_506158.1 88608608 3931993 225085..225729 1 NC_007798.1 identified by similarity to SP:P28601; match to protein family HMM PF00573; 50S ribosomal protein L4 225729 rplD 3931993 rplD Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L4 YP_506158.1 225085 D 222891 CDS YP_506159.1 88608673 3931566 225726..226010 1 NC_007798.1 identified by match to protein family HMM PF00276; 50S ribosomal protein L23 226010 rplW 3931566 rplW Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L23 YP_506159.1 225726 D 222891 CDS YP_506160.1 88608825 3931693 226016..226855 1 NC_007798.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 226855 rplB 3931693 rplB Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L2 YP_506160.1 226016 D 222891 CDS YP_506161.1 88608387 3931362 226864..227139 1 NC_007798.1 identified by similarity to SP:P12731; match to protein family HMM PF00203; match to protein family HMM TIGR01050; 30S ribosomal protein S19 227139 rpsS 3931362 rpsS Neorickettsia sennetsu str. Miyayama 30S ribosomal protein S19 YP_506161.1 226864 D 222891 CDS YP_506162.1 88608245 3931467 227136..227477 1 NC_007798.1 identified by similarity to SP:P02423; match to protein family HMM PF00237; match to protein family HMM TIGR01044; 50S ribosomal protein L22 227477 rplV 3931467 rplV Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L22 YP_506162.1 227136 D 222891 CDS YP_506163.1 88608356 3931521 227461..228096 1 NC_007798.1 identified by similarity to SP:P02352; match to protein family HMM PF00189; match to protein family HMM PF00417; match to protein family HMM PF07650; match to protein family HMM TIGR01009; 30S ribosomal protein S3 228096 rpsC 3931521 rpsC Neorickettsia sennetsu str. Miyayama 30S ribosomal protein S3 YP_506163.1 227461 D 222891 CDS YP_506164.1 88608635 3932038 228112..228531 1 NC_007798.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 228531 rplP 3932038 rplP Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L16 YP_506164.1 228112 D 222891 CDS YP_506165.1 88608855 3931664 228528..228722 1 NC_007798.1 identified by match to protein family HMM TIGR00012; 50S ribosomal protein L29 228722 rpmC 3931664 rpmC Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L29 YP_506165.1 228528 D 222891 CDS YP_506166.1 88608754 3931641 228724..228948 1 NC_007798.1 identified by match to protein family HMM PF00366; 30S ribosomal protein S17 228948 rpsQ 3931641 rpsQ Neorickettsia sennetsu str. Miyayama 30S ribosomal protein S17 YP_506166.1 228724 D 222891 CDS YP_506167.1 88608021 3931476 228966..229325 1 NC_007798.1 identified by similarity to SP:P02411; match to protein family HMM PF00238; match to protein family HMM TIGR01067; 50S ribosomal protein L14 229325 rplN 3931476 rplN Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L14 YP_506167.1 228966 D 222891 CDS YP_506168.1 88608830 3931698 229322..229636 1 NC_007798.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 229636 rplX 3931698 rplX Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L24 YP_506168.1 229322 D 222891 CDS YP_506169.1 88608220 3932054 229652..230185 1 NC_007798.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 230185 rplE 3932054 rplE Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L5 YP_506169.1 229652 D 222891 CDS YP_506170.1 88608131 3932123 230202..230507 1 NC_007798.1 identified by match to protein family HMM PF00253; 30S ribosomal protein S14 230507 rpsN 3932123 rpsN Neorickettsia sennetsu str. Miyayama 30S ribosomal protein S14 YP_506170.1 230202 D 222891 CDS YP_506171.1 88608444 3931382 230527..230922 1 NC_007798.1 identified by similarity to SP:P02361; match to protein family HMM PF00410; 30S ribosomal protein S8 230922 rpsH 3931382 rpsH Neorickettsia sennetsu str. Miyayama 30S ribosomal protein S8 YP_506171.1 230527 D 222891 CDS YP_506172.1 88608312 3931705 230925..231455 1 NC_007798.1 identified by similarity to SP:P04448; match to protein family HMM PF00347; 50S ribosomal protein L6 231455 rplF 3931705 rplF Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L6 YP_506172.1 230925 D 222891 CDS YP_506173.1 88608283 3932017 231475..231828 1 NC_007798.1 identified by similarity to SP:P46899; 50S ribosomal protein L18 231828 rplR 3932017 rplR Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L18 YP_506173.1 231475 D 222891 CDS YP_506174.1 88608248 3931470 231845..232363 1 NC_007798.1 identified by similarity to SP:P21467; match to protein family HMM PF00333; match to protein family HMM PF03719; match to protein family HMM TIGR01021; 30S ribosomal protein S5 232363 rpsE 3931470 rpsE Neorickettsia sennetsu str. Miyayama 30S ribosomal protein S5 YP_506174.1 231845 D 222891 CDS YP_506175.1 88608546 3931725 232360..232809 1 NC_007798.1 identified by similarity to SP:P19946; match to protein family HMM PF01305; 50S ribosomal protein L15 232809 rplO 3931725 rplO Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L15 YP_506175.1 232360 D 222891 CDS YP_506176.1 88608542 3932107 232806..234116 1 NC_007798.1 identified by similarity to SP:P03844; match to protein family HMM PF00344; match to protein family HMM TIGR00967; preprotein translocase subunit SecY 234116 secY 3932107 secY Neorickettsia sennetsu str. Miyayama preprotein translocase subunit SecY YP_506176.1 232806 D 222891 CDS YP_506177.1 88608637 3931914 234113..234742 1 NC_007798.1 identified by similarity to SP:P10772; match to protein family HMM PF00406; adenylate kinase 234742 adk 3931914 adk Neorickettsia sennetsu str. Miyayama adenylate kinase YP_506177.1 234113 D 222891 CDS YP_506178.1 88608326 3932234 234756..235127 1 NC_007798.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 235127 rpsM 3932234 rpsM Neorickettsia sennetsu str. Miyayama 30S ribosomal protein S13 YP_506178.1 234756 D 222891 CDS YP_506179.1 88608270 3931720 235140..235502 1 NC_007798.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 235502 rpsK 3931720 rpsK Neorickettsia sennetsu str. Miyayama 30S ribosomal protein S11 YP_506179.1 235140 D 222891 CDS YP_506180.1 88608775 3931778 235540..236541 1 NC_007798.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 236541 rpoA 3931778 rpoA Neorickettsia sennetsu str. Miyayama DNA-directed RNA polymerase subunit alpha YP_506180.1 235540 D 222891 CDS YP_506181.1 88608662 3931555 236560..236913 1 NC_007798.1 identified by similarity to SP:P02416; match to protein family HMM PF01196; match to protein family HMM TIGR00059; 50S ribosomal protein L17 236913 rplQ 3931555 rplQ Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L17 YP_506181.1 236560 D 222891 CDS YP_506182.1 88608015 3931952 complement(236932..237261) 1 NC_007798.1 identified by similarity to PIR:E82767; hypothetical protein 237261 3931952 NSE_0291 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506182.1 236932 R 222891 CDS YP_506183.1 88608879 3932077 complement(237242..237751) 1 NC_007798.1 identified by similarity to SP:P18200; match to protein family HMM PF04608; phosphatidylglycerophosphatase A 237751 pgpA 3932077 pgpA Neorickettsia sennetsu str. Miyayama phosphatidylglycerophosphatase A YP_506183.1 237242 R 222891 CDS YP_506184.1 88608274 3932008 complement(237738..238307) 1 NC_007798.1 identified by similarity to SP:P03000; match to protein family HMM PF00707; match to protein family HMM PF05198; translation initiation factor IF-3 238307 infC 3932008 infC Neorickettsia sennetsu str. Miyayama translation initiation factor IF-3 YP_506184.1 237738 R 222891 CDS YP_506185.1 88608148 3931448 complement(238350..240263) 1 NC_007798.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 240263 thrS 3931448 thrS Neorickettsia sennetsu str. Miyayama threonyl-tRNA synthetase YP_506185.1 238350 R 222891 CDS YP_506186.1 88608295 3932257 complement(240478..241422) 1 NC_007798.1 hypothetical protein 241422 3932257 NSE_0296 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506186.1 240478 R 222891 CDS YP_506187.1 88607985 3931922 complement(241441..241776) 1 NC_007798.1 identified by match to protein family HMM PF00111; iron-sulfur cluster binding protein 241776 3931922 NSE_0297 Neorickettsia sennetsu str. Miyayama iron-sulfur cluster binding protein YP_506187.1 241441 R 222891 CDS YP_506188.1 88608318 3932226 complement(241778..243559) 1 NC_007798.1 identified by similarity to SP:P36541; match to protein family HMM PF00012; putative chaperone protein HscA 243559 3932226 NSE_0298 Neorickettsia sennetsu str. Miyayama putative chaperone protein HscA YP_506188.1 241778 R 222891 CDS YP_506189.1 88608404 3932308 complement(243537..244016) 1 NC_007798.1 identified by similarity to SP:P36540; match to protein family HMM PF00226; match to protein family HMM PF07743; putative chaperone protein HscB 244016 3932308 NSE_0299 Neorickettsia sennetsu str. Miyayama putative chaperone protein HscB YP_506189.1 243537 R 222891 CDS YP_506190.1 88608336 3931838 complement(244031..244129) 1 NC_007798.1 hypothetical protein 244129 3931838 NSE_0300 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506190.1 244031 R 222891 CDS YP_506191.1 88608116 3931987 complement(244126..244491) 1 NC_007798.1 identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; iron-sulfur cluster assembly accessory protein 244491 3931987 NSE_0301 Neorickettsia sennetsu str. Miyayama iron-sulfur cluster assembly accessory protein YP_506191.1 244126 R 222891 CDS YP_506192.1 88608191 3931758 complement(244519..244947) 1 NC_007798.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR01999; scaffold protein 244947 iscU 3931758 iscU Neorickettsia sennetsu str. Miyayama scaffold protein YP_506192.1 244519 R 222891 CDS YP_506193.1 88608058 3932152 complement(245003..246211) 1 NC_007798.1 identified by similarity to SP:P39171; match to protein family HMM PF00266; match to protein family HMM PF01212; cysteine desulfurase 246211 iscS 3932152 iscS Neorickettsia sennetsu str. Miyayama cysteine desulfurase YP_506193.1 245003 R 222891 CDS YP_506194.1 88608399 3932303 complement(246255..247847) 1 NC_007798.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM PF02082; match to protein family HMM TIGR00738; rrf2/class V aminotransferase family protein 247847 3932303 NSE_0304 Neorickettsia sennetsu str. Miyayama rrf2/class V aminotransferase family protein YP_506194.1 246255 R 222891 CDS YP_506195.1 88608167 3931506 248179..249813 1 NC_007798.1 identified by similarity to GB:AAS14787.1; putative transporter 249813 3931506 NSE_0305 Neorickettsia sennetsu str. Miyayama putative transporter YP_506195.1 248179 D 222891 CDS YP_506196.1 88608536 3932101 249797..250381 1 NC_007798.1 identified by match to protein family HMM PF01386; match to protein family HMM TIGR00731; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 250381 3932101 NSE_0306 Neorickettsia sennetsu str. Miyayama ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 YP_506196.1 249797 D 222891 CDS YP_506197.1 88608638 3931915 250381..250965 1 NC_007798.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 250965 pth 3931915 pth Neorickettsia sennetsu str. Miyayama peptidyl-tRNA hydrolase YP_506197.1 250381 D 222891 CDS YP_506198.1 88608518 3931398 complement(251072..252247) 1 NC_007798.1 identified by similarity to GB:AAB41630.1; match to protein family HMM TIGR02049; glutamate--cysteine ligase 252247 gshA 3931398 gshA Neorickettsia sennetsu str. Miyayama glutamate--cysteine ligase YP_506198.1 251072 R 222891 CDS YP_506199.1 88608331 3932239 complement(252430..253032) 1 NC_007798.1 identified by match to protein family HMM PF01121; match to protein family HMM TIGR00152; dephospho-CoA kinase 253032 coaE 3932239 coaE Neorickettsia sennetsu str. Miyayama dephospho-CoA kinase YP_506199.1 252430 R 222891 CDS YP_506200.1 88608069 3931816 complement(253032..253793) 1 NC_007798.1 identified by similarity to SP:O33196; match to protein family HMM PF01513; putative ATP-NAD kinase 253793 3931816 NSE_0310 Neorickettsia sennetsu str. Miyayama putative ATP-NAD kinase YP_506200.1 253032 R 222891 CDS YP_506201.1 88608660 3932190 complement(253796..254065) 1 NC_007798.1 identified by similarity to SP:P37687; match to protein family HMM PF00462; match to protein family HMM TIGR02181; glutaredoxin 3 254065 grxC 3932190 grxC Neorickettsia sennetsu str. Miyayama glutaredoxin 3 YP_506201.1 253796 R 222891 CDS YP_506202.1 88608313 3931706 complement(254613..256475) 1 NC_007798.1 identified by similarity to SP:Q59753; match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542; RNA polymerase sigma factor RpoD 256475 rpoD 3931706 rpoD Neorickettsia sennetsu str. Miyayama RNA polymerase sigma factor RpoD YP_506202.1 254613 R 222891 CDS YP_506203.1 88608467 3932210 complement(256575..258797) 1 NC_007798.1 identified by similarity to SP:P15716; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; ATP-dependent Clp protease, ATP-binding subunit ClpA 258797 clpA 3932210 clpA Neorickettsia sennetsu str. Miyayama ATP-dependent Clp protease, ATP-binding subunit ClpA YP_506203.1 256575 R 222891 CDS YP_506204.1 88608569 3932279 complement(258824..259135) 1 NC_007798.1 hypothetical protein 259135 3932279 NSE_0314 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506204.1 258824 R 222891 CDS YP_506205.1 88608793 3931589 complement(259202..259876) 1 NC_007798.1 identified by match to protein family HMM PF00005; putative lipoprotein releasing system ATP-binding protein LolD 259876 3931589 NSE_0315 Neorickettsia sennetsu str. Miyayama putative lipoprotein releasing system ATP-binding protein LolD YP_506205.1 259202 R 222891 CDS YP_506206.1 88608590 3931913 260131..260259 1 NC_007798.1 hypothetical protein 260259 3931913 NSE_0316 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506206.1 260131 D 222891 CDS YP_506207.1 88608712 3931546 complement(260324..262534) 1 NC_007798.1 identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360; ComEC/Rec2 family protein 262534 3931546 NSE_0317 Neorickettsia sennetsu str. Miyayama ComEC/Rec2 family protein YP_506207.1 260324 R 222891 CDS YP_506208.1 88608631 3931435 262669..263601 1 NC_007798.1 identified by match to protein family HMM PF01571; aminomethyl transferase family protein 263601 3931435 NSE_0318 Neorickettsia sennetsu str. Miyayama aminomethyl transferase family protein YP_506208.1 262669 D 222891 CDS YP_506209.1 88608850 3931659 263902..264204 1 NC_007798.1 identified by similarity to SP:Q9ZG87; match to protein family HMM PF02699; match to protein family HMM TIGR00739; preprotein translocase subunit YajC 264204 yajC 3931659 yajC Neorickettsia sennetsu str. Miyayama preprotein translocase subunit YajC YP_506209.1 263902 D 222891 CDS YP_506210.1 88608435 3931373 264220..264954 1 NC_007798.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 264954 pdxJ 3931373 pdxJ Neorickettsia sennetsu str. Miyayama pyridoxine 5'-phosphate synthase YP_506210.1 264220 D 222891 CDS YP_506211.1 88608656 3932186 265024..265332 1 NC_007798.1 identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; 50S ribosomal protein L28 265332 3932186 NSE_0321 Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L28 YP_506211.1 265024 D 222891 CDS YP_506212.1 88608341 3931843 265307..266197 1 NC_007798.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 266197 lipA 3931843 lipA Neorickettsia sennetsu str. Miyayama lipoyl synthase YP_506212.1 265307 D 222891 CDS YP_506213.1 88608485 3931804 266366..266845 1 NC_007798.1 identified by match to protein family HMM PF03364; aromatic rich family protein 266845 3931804 NSE_0323 Neorickettsia sennetsu str. Miyayama aromatic rich family protein YP_506213.1 266366 D 222891 CDS YP_506214.1 88608020 3931957 complement(266964..267776) 1 NC_007798.1 identified by similarity to GB:AAS14071.1; match to protein family HMM PF03618; hypothetical protein 267776 3931957 NSE_0324 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506214.1 266964 R 222891 CDS YP_506215.1 88608174 3931513 complement(268039..268317) 1 NC_007798.1 hypothetical protein 268317 3931513 NSE_0326 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506215.1 268039 R 222891 CDS YP_506216.1 88608605 3931990 268330..269088 1 NC_007798.1 identified by match to protein family HMM PF00571; CBS/transporter associated domain-containing protein 269088 3931990 NSE_0327 Neorickettsia sennetsu str. Miyayama CBS/transporter associated domain-containing protein YP_506216.1 268330 D 222891 CDS YP_506217.1 88608528 3932093 269201..270601 1 NC_007798.1 hypothetical protein 270601 3932093 NSE_0328 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506217.1 269201 D 222891 CDS YP_506218.1 88607974 3931418 270637..270780 1 NC_007798.1 hypothetical protein 270780 3931418 NSE_0329 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506218.1 270637 D 222891 CDS YP_506219.1 88608216 3932050 270789..271208 1 NC_007798.1 identified by similarity to SP:P80448; match to protein family HMM PF00037; ferredoxin 271208 3932050 NSE_0330 Neorickettsia sennetsu str. Miyayama ferredoxin YP_506219.1 270789 D 222891 CDS YP_506220.1 88608311 3932273 271230..271682 1 NC_007798.1 identified by similarity to GB:AAS14508.1; hypothetical protein 271682 3932273 NSE_0331 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506220.1 271230 D 222891 CDS YP_506221.1 88608059 3931806 271591..271791 1 NC_007798.1 hypothetical protein 271791 3931806 NSE_0332 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506221.1 271591 D 222891 CDS YP_506222.1 88608185 3931752 271801..273324 1 NC_007798.1 identified by similarity to SP:P21888; match to protein family HMM PF01406; match to protein family HMM TIGR00435; cysteinyl-tRNA synthetase 273324 cysS 3931752 cysS Neorickettsia sennetsu str. Miyayama cysteinyl-tRNA synthetase YP_506222.1 271801 D 222891 CDS YP_506223.1 88608301 3932263 273423..273617 1 NC_007798.1 hypothetical protein 273617 3932263 NSE_0334 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506223.1 273423 D 222891 CDS YP_506224.1 88608613 3931998 273806..276253 1 NC_007798.1 identified by similarity to SP:P49849; match to protein family HMM PF00488; match to protein family HMM PF01624; match to protein family HMM PF05188; match to protein family HMM PF05190; match to protein family HMM PF05192; match to protein family HMM TIGR01070; DNA mismatch repair protein MutS 276253 mutS 3931998 mutS Neorickettsia sennetsu str. Miyayama DNA mismatch repair protein MutS YP_506224.1 273806 D 222891 CDS YP_506225.1 88608693 3931793 276543..277205 1 NC_007798.1 identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; ribulose-phosphate 3-epimerase 277205 rpe 3931793 rpe Neorickettsia sennetsu str. Miyayama ribulose-phosphate 3-epimerase YP_506225.1 276543 D 222891 CDS YP_506226.1 88608522 3931403 complement(277355..278143) 1 NC_007798.1 identified by similarity to SP:P07906; match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase 278143 map 3931403 map Neorickettsia sennetsu str. Miyayama methionine aminopeptidase YP_506226.1 277355 R 222891 CDS YP_506227.1 88608577 3932287 complement(278179..278385) 1 NC_007798.1 hypothetical protein 278385 3932287 NSE_0338 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506227.1 278179 R 222891 CDS YP_506228.1 88608210 3931680 complement(278349..278876) 1 NC_007798.1 Coq7 family protein 278876 3931680 NSE_0339 Neorickettsia sennetsu str. Miyayama Coq7 family protein YP_506228.1 278349 R 222891 CDS YP_506229.1 88608168 3931507 complement(278854..279351) 1 NC_007798.1 identified by match to protein family HMM PF02600; DsbB family disulfide bond formation protein 279351 3931507 NSE_0340 Neorickettsia sennetsu str. Miyayama DsbB family disulfide bond formation protein YP_506229.1 278854 R 222891 CDS YP_506230.1 88608622 3931426 279854..280720 1 NC_007798.1 identified by similarity to SP:P48194; match to protein family HMM PF04542; match to protein family HMM PF04545; RNA polymerase sigma-32 factor 280720 rpoH 3931426 rpoH Neorickettsia sennetsu str. Miyayama RNA polymerase sigma-32 factor YP_506230.1 279854 D 222891 CDS YP_506231.1 88608360 3931525 280727..281845 1 NC_007798.1 identified by similarity to GB:AAK00615.2; match to protein family HMM PF00091; match to protein family HMM PF03953; match to protein family HMM TIGR00065; cell division protein FtsZ 281845 ftsZ 3931525 ftsZ Neorickettsia sennetsu str. Miyayama cell division protein FtsZ YP_506231.1 280727 D 222891 CDS YP_506232.1 88608249 3931471 282179..282739 1 NC_007798.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; ribosomal subunit interface protein 282739 3931471 NSE_0343 Neorickettsia sennetsu str. Miyayama ribosomal subunit interface protein YP_506232.1 282179 D 222891 CDS YP_506233.1 88608869 3931607 282905..283042 1 NC_007798.1 hypothetical protein 283042 3931607 NSE_0344 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506233.1 282905 D 222891 CDS YP_506234.1 88608544 3931723 complement(283091..284266) 1 NC_007798.1 identified by similarity to SP:P00951; match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234; tyrosyl-tRNA synthetase 284266 tyrS 3931723 tyrS Neorickettsia sennetsu str. Miyayama tyrosyl-tRNA synthetase YP_506234.1 283091 R 222891 CDS YP_506235.1 88608645 3932175 complement(284286..284747) 1 NC_007798.1 identified by match to protein family HMM PF00210; match to protein family HMM PF02915; match to protein family HMM TIGR00754; bacterioferritin 284747 bfr 3932175 bfr Neorickettsia sennetsu str. Miyayama bacterioferritin YP_506235.1 284286 R 222891 CDS YP_506236.1 88608076 3931624 complement(284981..287461) 1 NC_007798.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763; ATP-dependent protease La 287461 lon 3931624 lon Neorickettsia sennetsu str. Miyayama ATP-dependent protease La YP_506236.1 284981 R 222891 CDS YP_506237.1 88608414 3932196 complement(287515..288096) 1 NC_007798.1 identified by similarity to GB:AAK25708.1; match to protein family HMM PF02581; hypothetical protein 288096 3932196 NSE_0348 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506237.1 287515 R 222891 CDS YP_506238.1 88608599 3932251 complement(288093..288503) 1 NC_007798.1 identified by match to protein family HMM PF03653; hypothetical protein 288503 3932251 NSE_0349 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506238.1 288093 R 222891 CDS YP_506239.1 88608432 3931370 complement(288531..289937) 1 NC_007798.1 identified by similarity to SP:P06201; match to protein family HMM PF00120; match to protein family HMM PF03951; glutamine synthetase 289937 glnA 3931370 glnA Neorickettsia sennetsu str. Miyayama glutamine synthetase YP_506239.1 288531 R 222891 CDS YP_506240.1 88608157 3931496 290087..290185 1 NC_007798.1 hypothetical protein 290185 3931496 NSE_0351 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506240.1 290087 D 222891 CDS YP_506241.1 88608794 3931590 290182..290631 1 NC_007798.1 identified by similarity to SP:Q89K77; match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR 290631 nrdR 3931590 nrdR Neorickettsia sennetsu str. Miyayama transcriptional regulator NrdR YP_506241.1 290182 D 222891 CDS YP_506242.1 88608226 3932060 complement(290732..290860) 1 NC_007798.1 hypothetical protein 290860 3932060 NSE_0353 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506242.1 290732 R 222891 CDS YP_506243.1 88608644 3932174 complement(290778..290948) 1 NC_007798.1 hypothetical protein 290948 3932174 NSE_0354 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506243.1 290778 R 222891 CDS YP_506244.1 88608085 3931897 290824..290922 1 NC_007798.1 hypothetical protein 290922 3931897 NSE_0355 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506244.1 290824 D 222891 CDS YP_506245.1 88608415 3932197 complement(290897..292789) 1 NC_007798.1 identified by match to protein family HMM PF00580; UvrD/Rep family helicase 292789 3932197 NSE_0356 Neorickettsia sennetsu str. Miyayama UvrD/Rep family helicase YP_506245.1 290897 R 222891 CDS YP_506246.1 88608135 3932127 complement(293164..293970) 1 NC_007798.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family hydrolase 293970 3932127 NSE_0357 Neorickettsia sennetsu str. Miyayama TatD family hydrolase YP_506246.1 293164 R 222891 CDS YP_506247.1 88608785 3931581 complement(294053..294172) 1 NC_007798.1 hypothetical protein 294172 3931581 NSE_0358 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506247.1 294053 R 222891 CDS YP_506248.1 88608713 3931547 complement(294217..294711) 1 NC_007798.1 identified by match to protein family HMM TIGR00809; putative protein-export protein SecB 294711 3931547 NSE_0359 Neorickettsia sennetsu str. Miyayama putative protein-export protein SecB YP_506248.1 294217 R 222891 CDS YP_506249.1 88608273 3932007 294822..295448 1 NC_007798.1 identified by match to protein family HMM PF04280; Tim44-like domain-containing protein 295448 3932007 NSE_0360 Neorickettsia sennetsu str. Miyayama Tim44-like domain-containing protein YP_506249.1 294822 D 222891 CDS YP_506250.1 88608563 3931742 295429..295659 1 NC_007798.1 putative lipoprotein 295659 3931742 NSE_0361 Neorickettsia sennetsu str. Miyayama putative lipoprotein YP_506250.1 295429 D 222891 CDS YP_506251.1 88608711 3931545 complement(295681..296469) 1 NC_007798.1 identified by similarity to SP:P06992; match to protein family HMM PF00398; match to protein family HMM TIGR00755; dimethyladenosine transferase 296469 ksgA 3931545 ksgA Neorickettsia sennetsu str. Miyayama dimethyladenosine transferase YP_506251.1 295681 R 222891 CDS YP_506252.1 88608416 3932198 296464..296598 1 NC_007798.1 hypothetical protein 296598 3932198 NSE_0363 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506252.1 296464 D 222891 CDS YP_506253.1 88608031 3931487 296591..296713 1 NC_007798.1 hypothetical protein 296713 3931487 NSE_0364 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506253.1 296591 D 222891 CDS YP_506254.1 88608232 3932066 296771..297895 1 NC_007798.1 hypothetical protein 297895 3932066 NSE_0365 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506254.1 296771 D 222891 CDS YP_506255.1 88608143 3931443 297885..300113 1 NC_007798.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase/response regulator 300113 3931443 NSE_0366 Neorickettsia sennetsu str. Miyayama sensor histidine kinase/response regulator YP_506255.1 297885 D 222891 CDS YP_506256.1 88608761 3931764 300119..301429 1 NC_007798.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 301429 proS 3931764 proS Neorickettsia sennetsu str. Miyayama prolyl-tRNA synthetase YP_506256.1 300119 D 222891 CDS YP_506257.1 88608547 3931726 301456..302184 1 NC_007798.1 hypothetical protein 302184 3931726 NSE_0368 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506257.1 301456 D 222891 CDS YP_506258.1 88608476 3932219 302295..304898 1 NC_007798.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 304898 ppdK 3932219 ppdK Neorickettsia sennetsu str. Miyayama pyruvate phosphate dikinase YP_506258.1 302295 D 222891 CDS YP_506259.1 88608579 3932289 304899..305108 1 NC_007798.1 hypothetical protein 305108 3932289 NSE_0370 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506259.1 304899 D 222891 CDS YP_506260.1 88608240 3931462 complement(305092..305652) 1 NC_007798.1 identified by similarity to SP:P28225; match to protein family HMM PF01243; putative pyridoxamine 5-phosphate oxidase 305652 3931462 NSE_0371 Neorickettsia sennetsu str. Miyayama putative pyridoxamine 5-phosphate oxidase YP_506260.1 305092 R 222891 CDS YP_506261.1 88608365 3931529 306113..306853 1 NC_007798.1 hypothetical protein 306853 3931529 NSE_0372 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506261.1 306113 D 222891 CDS YP_506262.1 88608299 3932261 complement(306962..307957) 1 NC_007798.1 identified by similarity to SP:Q08111; match to protein family HMM PF01207; match to protein family HMM TIGR00737; putative tRNA-dihydrouridine synthase 307957 3932261 NSE_0373 Neorickettsia sennetsu str. Miyayama putative tRNA-dihydrouridine synthase YP_506262.1 306962 R 222891 CDS YP_506263.1 88607995 3931932 complement(308166..308930) 1 NC_007798.1 identified by match to protein family HMM PF01975; match to protein family HMM TIGR00087; acid phosphatase SurE 308930 surE 3931932 surE Neorickettsia sennetsu str. Miyayama acid phosphatase SurE YP_506263.1 308166 R 222891 CDS YP_506264.1 88608095 3931907 complement(308915..309076) 1 NC_007798.1 hypothetical protein 309076 3931907 NSE_0375 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506264.1 308915 R 222891 CDS YP_506265.1 88608201 3931671 309273..311066 1 NC_007798.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 311066 sdhA 3931671 sdhA Neorickettsia sennetsu str. Miyayama succinate dehydrogenase flavoprotein subunit YP_506265.1 309273 D 222891 CDS YP_506266.1 88608630 3931434 complement(311189..311989) 1 NC_007798.1 hypothetical protein 311989 3931434 NSE_0377 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506266.1 311189 R 222891 CDS YP_506267.1 88608374 3932031 312028..312189 1 NC_007798.1 hypothetical protein 312189 3932031 NSE_0378 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506267.1 312028 D 222891 CDS YP_506268.1 88608503 3931349 complement(312134..312247) 1 NC_007798.1 hypothetical protein 312247 3931349 NSE_0379 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506268.1 312134 R 222891 CDS YP_506269.1 88608132 3932124 312371..313381 1 NC_007798.1 identified by similarity to SP:P28304; match to protein family HMM PF00107; quinone oxidoreductase 313381 qor 3932124 qor Neorickettsia sennetsu str. Miyayama quinone oxidoreductase YP_506269.1 312371 D 222891 CDS YP_506270.1 88608838 3931647 313382..313522 1 NC_007798.1 hypothetical protein 313522 3931647 NSE_0381 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506270.1 313382 D 222891 CDS YP_506271.1 88608461 3931827 313569..313709 1 NC_007798.1 hypothetical protein 313709 3931827 NSE_0382 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506271.1 313569 D 222891 CDS YP_506272.1 88608591 3932243 313714..314004 1 NC_007798.1 identified by match to protein family HMM PF04800; putative oxidoreductase 314004 3932243 NSE_0383 Neorickettsia sennetsu str. Miyayama putative oxidoreductase YP_506272.1 313714 D 222891 CDS YP_506273.1 88608325 3932233 314001..315134 1 NC_007798.1 identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 315134 3932233 NSE_0384 Neorickettsia sennetsu str. Miyayama UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase YP_506273.1 314001 D 222891 CDS YP_506274.1 88608800 3931854 315148..316008 1 NC_007798.1 identified by similarity to SP:P06983; match to protein family HMM PF01379; match to protein family HMM PF03900; match to protein family HMM TIGR00212; putative porphobilinogen deaminase 316008 3931854 NSE_0385 Neorickettsia sennetsu str. Miyayama putative porphobilinogen deaminase YP_506274.1 315148 D 222891 CDS YP_506275.1 88608530 3932095 complement(316415..317437) 1 NC_007798.1 identified by similarity to SP:P34943; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993; NADH-ubiquinone oxidoreductase family protein 317437 3932095 NSE_0386 Neorickettsia sennetsu str. Miyayama NADH-ubiquinone oxidoreductase family protein YP_506275.1 316415 R 222891 CDS YP_506276.1 88608784 3931580 complement(317621..317713) 1 NC_007798.1 hypothetical protein 317713 3931580 NSE_0387 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506276.1 317621 R 222891 CDS YP_506277.1 88608661 3931554 complement(317767..318903) 1 NC_007798.1 identified by similarity to SP:P43862; match to protein family HMM PF02481; match to protein family HMM TIGR00732; putative DNA processing protein DprA 318903 3931554 NSE_0388 Neorickettsia sennetsu str. Miyayama putative DNA processing protein DprA YP_506277.1 317767 R 222891 CDS YP_506278.1 88608027 3931482 319052..319468 1 NC_007798.1 identified by similarity to GB:AAS14547.1; hypothetical protein 319468 3931482 NSE_0389 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506278.1 319052 D 222891 CDS YP_506279.1 88608876 3932074 319441..319533 1 NC_007798.1 hypothetical protein 319533 3932074 NSE_0390 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506279.1 319441 D 222891 CDS YP_506280.1 88608268 3931718 320139..320699 1 NC_007798.1 identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079; peptide deformylase 320699 def 3931718 def Neorickettsia sennetsu str. Miyayama peptide deformylase YP_506280.1 320139 D 222891 CDS YP_506281.1 88608217 3932051 321045..322010 1 NC_007798.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 322010 hemB 3932051 hemB Neorickettsia sennetsu str. Miyayama delta-aminolevulinic acid dehydratase YP_506281.1 321045 D 222891 CDS YP_506282.1 88608339 3931841 complement(322213..323052) 1 NC_007798.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765; YihY family protein 323052 3931841 NSE_0395 Neorickettsia sennetsu str. Miyayama YihY family protein YP_506282.1 322213 R 222891 CDS YP_506283.1 88608811 3931865 323162..323893 1 NC_007798.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 323893 atpB 3931865 atpB Neorickettsia sennetsu str. Miyayama F0F1 ATP synthase subunit A YP_506283.1 323162 D 222891 CDS YP_506284.1 88608692 3931792 323916..324143 1 NC_007798.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 324143 atpE 3931792 atpE Neorickettsia sennetsu str. Miyayama F0F1 ATP synthase subunit C YP_506284.1 323916 D 222891 CDS YP_506285.1 88608612 3931997 324144..324674 1 NC_007798.1 identified by similarity to SP:P15015; ATP synthase F0 subunit B' 324674 atpX 3931997 atpX Neorickettsia sennetsu str. Miyayama ATP synthase F0 subunit B' YP_506285.1 324144 D 222891 CDS YP_506286.1 88608378 3931353 324665..325159 1 NC_007798.1 identified by similarity to PIR:AI0500; putative ATPase F0 subunit B 325159 3931353 NSE_0399 Neorickettsia sennetsu str. Miyayama putative ATPase F0 subunit B YP_506286.1 324665 D 222891 CDS YP_506287.1 88608523 3931404 325062..325439 1 NC_007798.1 hypothetical protein 325439 3931404 NSE_0400 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506287.1 325062 D 222891 CDS YP_506288.1 88608667 3931560 complement(325597..326046) 1 NC_007798.1 identified by similarity to SP:P51963; match to protein family HMM PF00885; match to protein family HMM TIGR00114; 6,7-dimethyl-8-ribityllumazine synthase 326046 ribE-1 3931560 ribE-1 Neorickettsia sennetsu str. Miyayama 6,7-dimethyl-8-ribityllumazine synthase YP_506288.1 325597 R 222891 CDS YP_506289.1 88608477 3932220 complement(326227..327927) 1 NC_007798.1 identified by match to protein family HMM PF02096; inner membrane protein, 60 kDa 327927 3932220 NSE_0402 Neorickettsia sennetsu str. Miyayama inner membrane protein, 60 kDa YP_506289.1 326227 R 222891 CDS YP_506290.1 88608584 3931365 327915..328007 1 NC_007798.1 hypothetical protein 328007 3931365 NSE_0403 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506290.1 327915 D 222891 CDS YP_506291.1 88608860 3931598 328184..329476 1 NC_007798.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; CBS domain-containing protein 329476 3931598 NSE_0404 Neorickettsia sennetsu str. Miyayama CBS domain-containing protein YP_506291.1 328184 D 222891 CDS YP_506292.1 88608114 3931985 329516..329632 1 NC_007798.1 hypothetical protein 329632 3931985 NSE_0405 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506292.1 329516 D 222891 CDS YP_506293.1 88608013 3931950 329625..330728 1 NC_007798.1 identified by similarity to SP:P07011; match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00019; peptide chain release factor 1 330728 prfA 3931950 prfA Neorickettsia sennetsu str. Miyayama peptide chain release factor 1 YP_506293.1 329625 D 222891 CDS YP_506294.1 88608386 3931361 330832..331626 1 NC_007798.1 identified by similarity to GB:AAG30826.1; match to protein family HMM PF01553; 1-acyl-sn-glycerol-3-phosphate acyltransferase family protein 331626 3931361 NSE_0407 Neorickettsia sennetsu str. Miyayama 1-acyl-sn-glycerol-3-phosphate acyltransferase family protein YP_506294.1 330832 D 222891 CDS YP_506295.1 88608293 3932255 331727..333388 1 NC_007798.1 identified by similarity to SP:P02349; match to protein family HMM PF00575; 30S ribosomal protein S1 333388 rpsA 3932255 rpsA Neorickettsia sennetsu str. Miyayama 30S ribosomal protein S1 YP_506295.1 331727 D 222891 CDS YP_506296.1 88608447 3931385 333406..334332 1 NC_007798.1 identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706; signal peptide peptidase SppA, 36K type 334332 sppA 3931385 sppA Neorickettsia sennetsu str. Miyayama signal peptide peptidase SppA, 36K type YP_506296.1 333406 D 222891 CDS YP_506297.1 88608815 3931869 334411..336084 1 NC_007798.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; putative ABC transporter ATP-binding/permease 336084 3931869 NSE_0410 Neorickettsia sennetsu str. Miyayama putative ABC transporter ATP-binding/permease YP_506297.1 334411 D 222891 CDS YP_506298.1 88608409 3932191 complement(336154..337971) 1 NC_007798.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 337971 nrdA 3932191 nrdA Neorickettsia sennetsu str. Miyayama ribonucleotide-diphosphate reductase subunit alpha YP_506298.1 336154 R 222891 CDS YP_506299.1 88608276 3932010 338504..338857 1 NC_007798.1 identified by match to protein family HMM PF01230; HIT domain-containing protein 338857 3932010 NSE_0413 Neorickettsia sennetsu str. Miyayama HIT domain-containing protein YP_506299.1 338504 D 222891 CDS YP_506300.1 88608421 3932203 338905..339021 1 NC_007798.1 hypothetical protein 339021 3932203 NSE_0414 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506300.1 338905 D 222891 CDS YP_506301.1 88608769 3931772 339114..339911 1 NC_007798.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III 339911 xth 3931772 xth Neorickettsia sennetsu str. Miyayama exodeoxyribonuclease III YP_506301.1 339114 D 222891 CDS YP_506302.1 88608634 3931438 complement(340113..340925) 1 NC_007798.1 identified by similarity to SP:P31773; match to protein family HMM PF00156; putative competence protein F 340925 3931438 NSE_0416 Neorickettsia sennetsu str. Miyayama putative competence protein F YP_506302.1 340113 R 222891 CDS YP_506303.1 88608603 3931988 complement(341123..342019) 1 NC_007798.1 identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00966; putative protein-export membrane protein SecF 342019 3931988 NSE_0417 Neorickettsia sennetsu str. Miyayama putative protein-export membrane protein SecF YP_506303.1 341123 R 222891 CDS YP_506304.1 88607998 3931935 342179..342328 1 NC_007798.1 hypothetical protein 342328 3931935 NSE_0418 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506304.1 342179 D 222891 CDS YP_506305.1 88608677 3931570 342339..342527 1 NC_007798.1 hypothetical protein 342527 3931570 NSE_0419 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506305.1 342339 D 222891 CDS YP_506306.1 88608083 3931895 342545..344797 1 NC_007798.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 344797 3931895 NSE_0420 Neorickettsia sennetsu str. Miyayama malic enzyme YP_506306.1 342545 D 222891 CDS YP_506307.1 88608493 3931339 344835..344939 1 NC_007798.1 hypothetical protein 344939 3931339 NSE_0421 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506307.1 344835 D 222891 CDS YP_506308.1 88608441 3931379 complement(344977..345357) 1 NC_007798.1 identified by similarity to PIR:H97753; hypothetical protein 345357 3931379 NSE_0422 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506308.1 344977 R 222891 CDS YP_506309.1 88608851 3931660 complement(345354..347264) 1 NC_007798.1 identified by similarity to GB:CAB51029.1; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; ATP-dependent metalloprotease FtsH 347264 ftsH 3931660 ftsH Neorickettsia sennetsu str. Miyayama ATP-dependent metalloprotease FtsH YP_506309.1 345354 R 222891 CDS YP_506310.1 88608211 3931681 347186..347419 1 NC_007798.1 hypothetical protein 347419 3931681 NSE_0424 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506310.1 347186 D 222891 CDS YP_506311.1 88608153 3931453 347410..347502 1 NC_007798.1 hypothetical protein 347502 3931453 NSE_0425 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506311.1 347410 D 222891 CDS YP_506312.1 88607984 3931921 347553..350183 1 NC_007798.1 identified by similarity to SP:P07395; match to protein family HMM PF01588; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472; putative phenylalanyl-tRNA synthetase subunit beta 350183 3931921 NSE_0426 Neorickettsia sennetsu str. Miyayama putative phenylalanyl-tRNA synthetase subunit beta YP_506312.1 347553 D 222891 CDS YP_506313.1 88608795 3931591 350258..351460 1 NC_007798.1 identified by similarity to SP:P28264; match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA 351460 ftsA 3931591 ftsA Neorickettsia sennetsu str. Miyayama cell division protein FtsA YP_506313.1 350258 D 222891 CDS YP_506314.1 88608199 3931669 complement(351773..352234) 1 NC_007798.1 hypothetical protein 352234 3931669 NSE_0428 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506314.1 351773 R 222891 CDS YP_506315.1 88608319 3932227 352330..352785 1 NC_007798.1 identified by similarity to SP:P29919; match to protein family HMM PF00507; NADH dehydrogenase I subunit A 352785 nuoA 3932227 nuoA Neorickettsia sennetsu str. Miyayama NADH dehydrogenase I subunit A YP_506315.1 352330 D 222891 CDS YP_506316.1 88608004 3931941 352776..352904 1 NC_007798.1 hypothetical protein 352904 3931941 NSE_0430 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506316.1 352776 D 222891 CDS YP_506317.1 88608136 3932128 352952..353455 1 NC_007798.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 353455 nuoB 3932128 nuoB Neorickettsia sennetsu str. Miyayama NADH dehydrogenase subunit B YP_506317.1 352952 D 222891 CDS YP_506318.1 88608330 3932238 353471..354031 1 NC_007798.1 identified by similarity to SP:O84971; match to protein family HMM PF00329; match to protein family HMM TIGR01961; NADH dehydrogenase I subunit C 354031 nuoC 3932238 nuoC Neorickettsia sennetsu str. Miyayama NADH dehydrogenase I subunit C YP_506318.1 353471 D 222891 CDS YP_506319.1 88608457 3931823 354191..355207 1 NC_007798.1 identified by similarity to SP:O34425; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase 355207 gap 3931823 gap Neorickettsia sennetsu str. Miyayama glyceraldehyde-3-phosphate dehydrogenase YP_506319.1 354191 D 222891 CDS YP_506320.1 88608445 3931383 355336..355479 1 NC_007798.1 hypothetical protein 355479 3931383 NSE_0435 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506320.1 355336 D 222891 CDS YP_506321.1 88608817 3931685 355523..356650 1 NC_007798.1 identified by similarity to SP:P50314; match to protein family HMM PF00162; phosphoglycerate kinase 356650 pgk 3931685 pgk Neorickettsia sennetsu str. Miyayama phosphoglycerate kinase YP_506321.1 355523 D 222891 CDS YP_506322.1 88608822 3931690 356664..356768 1 NC_007798.1 hypothetical protein 356768 3931690 NSE_0437 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506322.1 356664 D 222891 CDS YP_506323.1 88608647 3932177 complement(356761..357672) 1 NC_007798.1 identified by similarity to SP:P22565; match to protein family HMM PF02401; match to protein family HMM TIGR00216; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 357672 ispH 3932177 ispH Neorickettsia sennetsu str. Miyayama 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_506323.1 356761 R 222891 CDS YP_506324.1 88608760 3931763 357701..357925 1 NC_007798.1 hypothetical protein 357925 3931763 NSE_0439 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506324.1 357701 D 222891 CDS YP_506325.1 88608829 3931697 357891..358187 1 NC_007798.1 hypothetical protein 358187 3931697 NSE_0440 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506325.1 357891 D 222891 CDS YP_506326.1 88608065 3931812 358184..358894 1 NC_007798.1 hypothetical protein 358894 3931812 NSE_0441 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506326.1 358184 D 222891 CDS YP_506327.1 88608099 3931970 359143..360159 1 NC_007798.1 identified by match to protein family HMM PF00563; EAL domain-containing protein 360159 3931970 NSE_0442 Neorickettsia sennetsu str. Miyayama EAL domain-containing protein YP_506327.1 359143 D 222891 CDS YP_506328.1 88608079 3931891 360156..361325 1 NC_007798.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 361325 dxr 3931891 dxr Neorickettsia sennetsu str. Miyayama 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_506328.1 360156 D 222891 CDS YP_506329.1 88608525 3932090 complement(361526..362551) 1 NC_007798.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 362551 obgE 3932090 obgE Neorickettsia sennetsu str. Miyayama GTPase ObgE YP_506329.1 361526 R 222891 CDS YP_506330.1 88608279 3932013 complement(362555..362716) 1 NC_007798.1 hypothetical protein 362716 3932013 NSE_0445 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506330.1 362555 R 222891 CDS YP_506331.1 88608593 3932245 363071..363745 1 NC_007798.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 363745 3932245 NSE_0446 Neorickettsia sennetsu str. Miyayama short chain dehydrogenase/reductase family oxidoreductase YP_506331.1 363071 D 222891 CDS YP_506332.1 88607956 3932068 363841..364764 1 NC_007798.1 identified by similarity to SP:P46352; match to protein family HMM PF00589; match to protein family HMM PF02899; phage integrase family site specific recombinase 364764 3932068 NSE_0447 Neorickettsia sennetsu str. Miyayama phage integrase family site specific recombinase YP_506332.1 363841 D 222891 CDS YP_506333.1 88608768 3931771 complement(364994..365716) 1 NC_007798.1 identified by similarity to GB:AAS14677.1; putative phosphoribosylformylglycinamidine synthase I 365716 3931771 NSE_0448 Neorickettsia sennetsu str. Miyayama putative phosphoribosylformylglycinamidine synthase I YP_506333.1 364994 R 222891 CDS YP_506334.1 88608509 3931389 complement(365808..368309) 1 NC_007798.1 hypothetical protein 368309 3931389 NSE_0449 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506334.1 365808 R 222891 CDS YP_506335.1 88608385 3931360 368228..368332 1 NC_007798.1 hypothetical protein 368332 3931360 NSE_0450 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506335.1 368228 D 222891 CDS YP_506336.1 88608820 3931688 368635..368757 1 NC_007798.1 hypothetical protein 368757 3931688 NSE_0451 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506336.1 368635 D 222891 CDS YP_506337.1 88608705 3931539 368757..369191 1 NC_007798.1 identified by similarity to SP:P80922; acyl carrier protein 369191 acpP 3931539 acpP Neorickettsia sennetsu str. Miyayama acyl carrier protein YP_506337.1 368757 D 222891 CDS YP_506338.1 88608089 3931901 369192..370439 1 NC_007798.1 identified by similarity to SP:P39435; match to protein family HMM PF00109; match to protein family HMM PF02801; 3-oxoacyl-(acyl-carrier-protein) synthase II 370439 fabF 3931901 fabF Neorickettsia sennetsu str. Miyayama 3-oxoacyl-(acyl-carrier-protein) synthase II YP_506338.1 369192 D 222891 CDS YP_506339.1 88608200 3931670 370372..371292 1 NC_007798.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 371292 hemF 3931670 hemF Neorickettsia sennetsu str. Miyayama coproporphyrinogen III oxidase YP_506339.1 370372 D 222891 CDS YP_506340.1 88608050 3932144 371337..371918 1 NC_007798.1 identified by similarity to SP:Q9ZC99; match to protein family HMM TIGR02281; hypothetical protein 371918 3932144 NSE_0455 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506340.1 371337 D 222891 CDS YP_506341.1 88608280 3932014 372094..374184 1 NC_007798.1 hypothetical protein 374184 3932014 NSE_0456 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506341.1 372094 D 222891 CDS YP_506342.1 88608681 3931781 374248..374340 1 NC_007798.1 hypothetical protein 374340 3931781 NSE_0457 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506342.1 374248 D 222891 CDS YP_506343.1 88608353 3931518 complement(374463..374999) 1 NC_007798.1 identified by match to protein family HMM PF01521; putative iron-sulfur cluster assembly accessory protein 374999 3931518 NSE_0458 Neorickettsia sennetsu str. Miyayama putative iron-sulfur cluster assembly accessory protein YP_506343.1 374463 R 222891 CDS YP_506344.1 88608205 3931675 375053..375145 1 NC_007798.1 hypothetical protein 375145 3931675 NSE_0459 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506344.1 375053 D 222891 CDS YP_506345.1 88608797 3931593 375359..376516 1 NC_007798.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR01353; putative deoxyguanosinetriphosphate triphosphohydrolase 376516 3931593 NSE_0460 Neorickettsia sennetsu str. Miyayama putative deoxyguanosinetriphosphate triphosphohydrolase YP_506345.1 375359 D 222891 CDS YP_506346.1 88608141 3931441 376571..377284 1 NC_007798.1 identified by similarity to GB:AAS13963.1; match to protein family HMM TIGR00613; putative DNA repair protein RecO 377284 3931441 NSE_0461 Neorickettsia sennetsu str. Miyayama putative DNA repair protein RecO YP_506346.1 376571 D 222891 CDS YP_506347.1 88608394 3932298 377728..378228 1 NC_007798.1 identified by similarity to GB:AAN30317.1; match to protein family HMM PF07031; hypothetical protein 378228 3932298 NSE_0462 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506347.1 377728 D 222891 CDS YP_506348.1 88608597 3932249 378409..379782 1 NC_007798.1 identified by similarity to SP:P54533; match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01350; dihydrolipoamide dehydrogenase 379782 lpdA-1 3932249 lpdA-1 Neorickettsia sennetsu str. Miyayama dihydrolipoamide dehydrogenase YP_506348.1 378409 D 222891 CDS YP_506349.1 88608646 3932176 379866..380216 1 NC_007798.1 identified by similarity to SP:Q89WK9; hypothetical protein 380216 3932176 NSE_0464 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506349.1 379866 D 222891 CDS YP_506350.1 88607966 3931410 complement(380375..381688) 1 NC_007798.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01769; magnesium transporter 381688 mgtE 3931410 mgtE Neorickettsia sennetsu str. Miyayama magnesium transporter YP_506350.1 380375 R 222891 CDS YP_506351.1 88608773 3931776 complement(381860..382969) 1 NC_007798.1 identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554; HK97 family phage major capsid protein 382969 3931776 NSE_0466 Neorickettsia sennetsu str. Miyayama HK97 family phage major capsid protein YP_506351.1 381860 R 222891 CDS YP_506352.1 88608144 3931444 complement(383147..385870) 1 NC_007798.1 identified by match to protein family HMM PF00580; ATP-dependent DNA helicase UvrD 385870 3931444 NSE_0467 Neorickettsia sennetsu str. Miyayama ATP-dependent DNA helicase UvrD YP_506352.1 383147 R 222891 CDS YP_506353.1 88608438 3931376 complement(385977..387092) 1 NC_007798.1 identified by match to protein family HMM PF03054; match to protein family HMM TIGR00420; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 387092 trmU 3931376 trmU Neorickettsia sennetsu str. Miyayama tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_506353.1 385977 R 222891 CDS YP_506354.1 88608468 3932211 387235..387405 1 NC_007798.1 hypothetical protein 387405 3932211 NSE_0469 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506354.1 387235 D 222891 CDS YP_506355.1 88608300 3932262 387389..388075 1 NC_007798.1 identified by similarity to SP:P03007; match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01406; DNA polymerase III subunit epsilon 388075 dnaQ 3932262 dnaQ Neorickettsia sennetsu str. Miyayama DNA polymerase III subunit epsilon YP_506355.1 387389 D 222891 CDS YP_506356.1 88608080 3931892 388285..389922 1 NC_007798.1 identified by match to protein family HMM PF00557; M24 family metallopeptidase 389922 3931892 NSE_0471 Neorickettsia sennetsu str. Miyayama M24 family metallopeptidase YP_506356.1 388285 D 222891 CDS YP_506357.1 88608778 3931574 complement(390009..390848) 1 NC_007798.1 identified by similarity to GB:AAB81313.1; putative hydrolase 390848 3931574 NSE_0472 Neorickettsia sennetsu str. Miyayama putative hydrolase YP_506357.1 390009 R 222891 CDS YP_506358.1 88608561 3931740 complement(390975..391514) 1 NC_007798.1 identified by similarity to SP:P30323; match to protein family HMM PF00034; cytochrome c 391514 cycM 3931740 cycM Neorickettsia sennetsu str. Miyayama cytochrome c YP_506358.1 390975 R 222891 CDS YP_506359.1 88608663 3931556 complement(391656..392234) 1 NC_007798.1 identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639; phosphoribosylglycinamide formyltransferase 392234 purN 3931556 purN Neorickettsia sennetsu str. Miyayama phosphoribosylglycinamide formyltransferase YP_506359.1 391656 R 222891 CDS YP_506360.1 88608537 3932102 complement(392294..393814) 1 NC_007798.1 identified by similarity to SP:P27888; match to protein family HMM PF00883; match to protein family HMM PF02789; cytosol aminopeptidase 393814 pepA 3932102 pepA Neorickettsia sennetsu str. Miyayama cytosol aminopeptidase YP_506360.1 392294 R 222891 CDS YP_506361.1 88608344 3931846 394279..396045 1 NC_007798.1 identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM PF02938; match to protein family HMM TIGR00459; aspartyl-tRNA synthetase 396045 aspS 3931846 aspS Neorickettsia sennetsu str. Miyayama aspartyl-tRNA synthetase YP_506361.1 394279 D 222891 CDS YP_506362.1 88608103 3931974 complement(396275..397252) 1 NC_007798.1 identified by similarity to SP:P96613; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase, truncation 397252 3931974 NSE_0478 Neorickettsia sennetsu str. Miyayama UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase, truncation YP_506362.1 396275 R 222891 CDS YP_506363.1 88608117 3932109 397522..398715 1 NC_007798.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease PstA 398715 pstA 3932109 pstA Neorickettsia sennetsu str. Miyayama phosphate ABC transporter permease PstA YP_506363.1 397522 D 222891 CDS YP_506364.1 88608225 3932059 398722..399735 1 NC_007798.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 399735 3932059 NSE_0480 Neorickettsia sennetsu str. Miyayama ABC transporter ATP-binding protein YP_506364.1 398722 D 222891 CDS YP_506365.1 88608310 3932272 399748..399903 1 NC_007798.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411; twin arginine-targeting protein translocase 399903 3932272 NSE_0481 Neorickettsia sennetsu str. Miyayama twin arginine-targeting protein translocase YP_506365.1 399748 D 222891 CDS YP_506366.1 88608044 3932138 complement(399916..400053) 1 NC_007798.1 hypothetical protein 400053 3932138 NSE_0482 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506366.1 399916 R 222891 CDS YP_506367.1 88608395 3932299 400180..400950 1 NC_007798.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 400950 thiG 3932299 thiG Neorickettsia sennetsu str. Miyayama thiazole synthase YP_506367.1 400180 D 222891 CDS YP_506368.1 88608257 3931617 401073..401252 1 NC_007798.1 hypothetical protein 401252 3931617 NSE_0484 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506368.1 401073 D 222891 CDS YP_506369.1 88608700 3931534 complement(401238..402062) 1 NC_007798.1 identified by similarity to SP:P26282; match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 402062 folP 3931534 folP Neorickettsia sennetsu str. Miyayama dihydropteroate synthase YP_506369.1 401238 R 222891 CDS YP_506370.1 88608128 3932120 complement(402270..402830) 1 NC_007798.1 identified by similarity to SP:P26281; match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 402830 folK 3932120 folK Neorickettsia sennetsu str. Miyayama 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_506370.1 402270 R 222891 CDS YP_506371.1 88608062 3931809 402840..402971 1 NC_007798.1 hypothetical protein 402971 3931809 NSE_0487 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506371.1 402840 D 222891 CDS YP_506372.1 88608304 3932266 402908..404056 1 NC_007798.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 404056 metK 3932266 metK Neorickettsia sennetsu str. Miyayama S-adenosylmethionine synthetase YP_506372.1 402908 D 222891 CDS YP_506373.1 88608194 3931761 complement(404059..404463) 1 NC_007798.1 identified by similarity to GB:AAM05284.1; hypothetical protein 404463 3931761 NSE_0489 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506373.1 404059 R 222891 CDS YP_506374.1 88608370 3932027 complement(404482..404799) 1 NC_007798.1 identified by similarity to SP:Q92FZ0; match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 404799 3932027 NSE_0490 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506374.1 404482 R 222891 CDS YP_506375.1 88608781 3931577 complement(405027..405158) 1 NC_007798.1 hypothetical protein 405158 3931577 NSE_0491 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506375.1 405027 R 222891 CDS YP_506376.1 88608682 3931782 complement(405136..406326) 1 NC_007798.1 identified by similarity to GB:AAB61695.1; match to protein family HMM PF00004; match to protein family HMM TIGR02397; putative DNA polymerase III, gamma/tau subunit 406326 3931782 NSE_0492 Neorickettsia sennetsu str. Miyayama putative DNA polymerase III, gamma/tau subunit YP_506376.1 405136 R 222891 CDS YP_506377.1 88608653 3932183 complement(406532..407230) 1 NC_007798.1 identified by similarity to SP:Q9L3B2; match to protein family HMM PF05312; coenzyme PQQ synthesis protein C 407230 pqqC 3932183 pqqC Neorickettsia sennetsu str. Miyayama coenzyme PQQ synthesis protein C YP_506377.1 406532 R 222891 CDS YP_506378.1 88608327 3932235 complement(407274..407426) 1 NC_007798.1 hypothetical protein 407426 3932235 NSE_0494 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506378.1 407274 R 222891 CDS YP_506379.1 88608574 3932284 407507..409369 1 NC_007798.1 molecular chaperone; heat shock protein 90 409369 htpG 3932284 htpG Neorickettsia sennetsu str. Miyayama heat shock protein 90 YP_506379.1 407507 D 222891 CDS YP_506380.1 88608640 3931917 409574..415339 1 NC_007798.1 identified by match to protein family HMM PF00023; ankyrin repeat-containing protein 415339 3931917 NSE_0496 Neorickettsia sennetsu str. Miyayama ankyrin repeat-containing protein YP_506380.1 409574 D 222891 CDS YP_506381.1 88608115 3931986 complement(415378..416796) 1 NC_007798.1 identified by match to protein family HMM PF00795; match to protein family HMM TIGR00546; apolipoprotein N-acyltransferase 416796 cutE 3931986 cutE Neorickettsia sennetsu str. Miyayama apolipoprotein N-acyltransferase YP_506381.1 415378 R 222891 CDS YP_506382.1 88608382 3931357 complement(416793..419252) 1 NC_007798.1 hypothetical protein 419252 3931357 NSE_0498 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506382.1 416793 R 222891 CDS YP_506383.1 88608126 3932118 419393..420511 1 NC_007798.1 identified by similarity to SP:P25539; match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD 420511 ribD 3932118 ribD Neorickettsia sennetsu str. Miyayama riboflavin biosynthesis protein RibD YP_506383.1 419393 D 222891 CDS YP_506384.1 88608555 3931734 complement(420546..422558) 1 NC_007798.1 identified by similarity to SP:O87703; match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575; DNA ligase, NAD-dependent 422558 ligA 3931734 ligA Neorickettsia sennetsu str. Miyayama DNA ligase, NAD-dependent YP_506384.1 420546 R 222891 CDS YP_506385.1 88608470 3932213 complement(422574..422900) 1 NC_007798.1 identified by similarity to SP:P31055; putative dihydroneopterin aldolase 422900 3932213 NSE_0501 Neorickettsia sennetsu str. Miyayama putative dihydroneopterin aldolase YP_506385.1 422574 R 222891 CDS YP_506386.1 88608787 3931583 complement(422881..423978) 1 NC_007798.1 identified by similarity to SP:P00907; match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368; carbamoyl-phosphate synthase small subunit 423978 carA 3931583 carA Neorickettsia sennetsu str. Miyayama carbamoyl-phosphate synthase small subunit YP_506386.1 422881 R 222891 CDS YP_506387.1 88608668 3931561 complement(424002..424232) 1 NC_007798.1 identified by similarity to SP:Q9A3C9; hypothetical protein 424232 3931561 NSE_0503 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506387.1 424002 R 222891 CDS YP_506388.1 88608030 3931485 complement(424312..424563) 1 NC_007798.1 hypothetical protein 424563 3931485 NSE_0504 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506388.1 424312 R 222891 CDS YP_506389.1 88608123 3932115 complement(424742..425293) 1 NC_007798.1 identified by similarity to GB:BAB50585.1; match to protein family HMM PF06242; hypothetical protein 425293 3932115 NSE_0505 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506389.1 424742 R 222891 CDS YP_506390.1 88608827 3931695 complement(425402..427957) 1 NC_007798.1 identified by match to protein family HMM PF00133; match to protein family HMM TIGR00396; leucyl-tRNA synthetase 427957 leuS 3931695 leuS Neorickettsia sennetsu str. Miyayama leucyl-tRNA synthetase YP_506390.1 425402 R 222891 CDS YP_506391.1 88608805 3931859 428064..428525 1 NC_007798.1 putative lipoprotein 428525 3931859 NSE_0507 Neorickettsia sennetsu str. Miyayama putative lipoprotein YP_506391.1 428064 D 222891 CDS YP_506392.1 88608081 3931893 complement(428596..429180) 1 NC_007798.1 identified by match to protein family HMM PF01381; DNA-binding protein 429180 3931893 NSE_0508 Neorickettsia sennetsu str. Miyayama DNA-binding protein YP_506392.1 428596 R 222891 CDS YP_506393.1 88608519 3931399 429441..430142 1 NC_007798.1 identified by similarity to SP:P30962; match to protein family HMM PF01578; match to protein family HMM TIGR01191; CcmC family heme exporter protein 430142 3931399 NSE_0509 Neorickettsia sennetsu str. Miyayama CcmC family heme exporter protein YP_506393.1 429441 D 222891 CDS YP_506394.1 88608852 3931661 430123..431001 1 NC_007798.1 identified by similarity to SP:P05654; match to protein family HMM PF00185; match to protein family HMM PF02729; aspartate carbamoyltransferase 431001 pyrB 3931661 pyrB Neorickettsia sennetsu str. Miyayama aspartate carbamoyltransferase YP_506394.1 430123 D 222891 CDS YP_506395.1 88608092 3931904 431551..433134 1 NC_007798.1 hypothetical protein 433134 3931904 NSE_0511 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506395.1 431551 D 222891 CDS YP_506396.1 88608688 3931788 complement(433470..434840) 1 NC_007798.1 involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP; response regulator PleD 434840 pleD 3931788 pleD Neorickettsia sennetsu str. Miyayama response regulator PleD YP_506396.1 433470 R 222891 CDS YP_506397.1 88608770 3931773 complement(434896..435171) 1 NC_007798.1 identified by similarity to GB:AAS13966.1; hypothetical protein 435171 3931773 NSE_0513 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506397.1 434896 R 222891 CDS YP_506398.1 88608701 3931535 complement(435176..439936) 1 NC_007798.1 identified by match to protein family HMM PF05088; NAD-glutamate dehydrogenase family protein 439936 3931535 NSE_0514 Neorickettsia sennetsu str. Miyayama NAD-glutamate dehydrogenase family protein YP_506398.1 435176 R 222891 CDS YP_506399.1 88608504 3931350 439915..440040 1 NC_007798.1 hypothetical protein 440040 3931350 NSE_0515 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506399.1 439915 D 222891 CDS YP_506400.1 88608324 3932232 440165..440440 1 NC_007798.1 putative glutamyl-tRNA(Gln) amidotransferase subunit C 440440 3932232 NSE_0516 Neorickettsia sennetsu str. Miyayama putative glutamyl-tRNA(Gln) amidotransferase subunit C YP_506400.1 440165 D 222891 CDS YP_506401.1 88608070 3931817 440529..440711 1 NC_007798.1 putative lipoprotein 440711 3931817 NSE_0517 Neorickettsia sennetsu str. Miyayama putative lipoprotein YP_506401.1 440529 D 222891 CDS YP_506402.1 88608755 3931642 complement(441445..442746) 1 NC_007798.1 identified by similarity to SP:P45631; match to protein family HMM PF00749; glutamyl-tRNA synthetase 442746 gltX-1 3931642 gltX-1 Neorickettsia sennetsu str. Miyayama glutamyl-tRNA synthetase YP_506402.1 441445 R 222891 CDS YP_506403.1 88608371 3932028 complement(442743..443219) 1 NC_007798.1 identified by similarity to GB:CAD72092.1; hypothetical protein 443219 3932028 NSE_0519 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506403.1 442743 R 222891 CDS YP_506404.1 88608725 3932158 complement(443212..444180) 1 NC_007798.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 444180 nrdF 3932158 nrdF Neorickettsia sennetsu str. Miyayama ribonucleotide-diphosphate reductase subunit beta YP_506404.1 443212 R 222891 CDS YP_506405.1 88608874 3931612 444417..446030 1 NC_007798.1 identified by similarity to SP:P03003; match to protein family HMM PF00013; match to protein family HMM TIGR01953; match to protein family HMM TIGR01954; N utilization substance protein A 446030 nusA 3931612 nusA Neorickettsia sennetsu str. Miyayama N utilization substance protein A YP_506405.1 444417 D 222891 CDS YP_506406.1 88608686 3931786 446040..448379 1 NC_007798.1 identified by similarity to SP:P17889; match to protein family HMM PF00009; match to protein family HMM PF01926; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00487; translation initiation factor IF-2 448379 infB 3931786 infB Neorickettsia sennetsu str. Miyayama translation initiation factor IF-2 YP_506406.1 446040 D 222891 CDS YP_506407.1 88608159 3931498 448388..448681 1 NC_007798.1 identified by similarity to SP:Q8XJR9; putative ribosome-binding factor A 448681 3931498 NSE_0523 Neorickettsia sennetsu str. Miyayama putative ribosome-binding factor A YP_506407.1 448388 D 222891 CDS YP_506408.1 88608061 3931808 448653..450992 1 NC_007798.1 identified by similarity to GB:AAS14586.1; hypothetical protein 450992 3931808 NSE_0524 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506408.1 448653 D 222891 CDS YP_506409.1 88608173 3931512 451188..452633 1 NC_007798.1 identified by similarity to SP:P06981; match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM PF03060; match to protein family HMM TIGR01302; inosine-5'-monophosphate dehydrogenase 452633 guaB 3931512 guaB Neorickettsia sennetsu str. Miyayama inosine-5'-monophosphate dehydrogenase YP_506409.1 451188 D 222891 CDS YP_506410.1 88608575 3932285 452751..455075 1 NC_007798.1 hypothetical protein 455075 3932285 NSE_0526 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506410.1 452751 D 222891 CDS YP_506411.1 88607977 3931421 complement(455068..455505) 1 NC_007798.1 identified by match to protein family HMM PF02470; mce-like protein 455505 3931421 NSE_0527 Neorickettsia sennetsu str. Miyayama mce-like protein YP_506411.1 455068 R 222891 CDS YP_506412.1 88608403 3932307 complement(455525..455836) 1 NC_007798.1 hypothetical protein 455836 3932307 NSE_0528 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506412.1 455525 R 222891 CDS YP_506413.1 88608093 3931905 complement(455796..456416) 1 NC_007798.1 identified by match to protein family HMM PF01612; 3'-5' exonuclease family protein 456416 3931905 NSE_0529 Neorickettsia sennetsu str. Miyayama 3'-5' exonuclease family protein YP_506413.1 455796 R 222891 CDS YP_506414.1 88608011 3931948 complement(456455..457438) 1 NC_007798.1 identified by similarity to SP:P41079; match to protein family HMM PF00154; match to protein family HMM TIGR02012; recA protein 457438 recA 3931948 recA Neorickettsia sennetsu str. Miyayama recA protein YP_506414.1 456455 R 222891 CDS YP_506415.1 88608782 3931578 457473..459203 1 NC_007798.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 459203 3931578 NSE_0531 Neorickettsia sennetsu str. Miyayama sensor histidine kinase YP_506415.1 457473 D 222891 CDS YP_506416.1 88608730 3932163 complement(459382..459480) 1 NC_007798.1 hypothetical protein 459480 3932163 NSE_0533 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506416.1 459382 R 222891 CDS YP_506417.1 88608423 3932205 complement(459627..460391) 1 NC_007798.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 460391 sdhB 3932205 sdhB Neorickettsia sennetsu str. Miyayama succinate dehydrogenase iron-sulfur subunit YP_506417.1 459627 R 222891 CDS YP_506418.1 88608567 3932277 460669..461808 1 NC_007798.1 identified by similarity to SP:P08622; match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; match to protein family HMM TIGR02349; chaperone protein DnaJ 461808 dnaJ 3932277 dnaJ Neorickettsia sennetsu str. Miyayama chaperone protein DnaJ YP_506418.1 460669 D 222891 CDS YP_506419.1 88608743 3931630 complement(461878..463299) 1 NC_007798.1 identified by similarity to SP:P77254; match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00650; putative GTP-binding protein EngA 463299 3931630 NSE_0536 Neorickettsia sennetsu str. Miyayama putative GTP-binding protein EngA YP_506419.1 461878 R 222891 CDS YP_506420.1 88608052 3932146 463967..467104 1 NC_007798.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 467104 ileS 3932146 ileS Neorickettsia sennetsu str. Miyayama isoleucyl-tRNA synthetase YP_506420.1 463967 D 222891 CDS YP_506421.1 88608864 3931602 467107..467727 1 NC_007798.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01367; orotate phosphoribosyltransferase 467727 pyrE 3931602 pyrE Neorickettsia sennetsu str. Miyayama orotate phosphoribosyltransferase YP_506421.1 467107 D 222891 CDS YP_506422.1 88608236 3931458 467891..468922 1 NC_007798.1 hypothetical protein 468922 3931458 NSE_0539 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506422.1 467891 D 222891 CDS YP_506423.1 88608106 3931977 complement(469013..470362) 1 NC_007798.1 identified by similarity to SP:P37105; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; signal recognition particle protein 470362 ffh 3931977 ffh Neorickettsia sennetsu str. Miyayama signal recognition particle protein YP_506423.1 469013 R 222891 CDS YP_506424.1 88608516 3931396 complement(470369..471850) 1 NC_007798.1 hypothetical protein 471850 3931396 NSE_0541 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506424.1 470369 R 222891 CDS YP_506425.1 88608566 3932276 complement(471847..472497) 1 NC_007798.1 identified by match to protein family HMM PF06271; RDD family protein 472497 3932276 NSE_0542 Neorickettsia sennetsu str. Miyayama RDD family protein YP_506425.1 471847 R 222891 CDS YP_506426.1 88608434 3931372 complement(472503..473567) 1 NC_007798.1 hypothetical protein 473567 3931372 NSE_0543 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506426.1 472503 R 222891 CDS YP_506427.1 88608242 3931464 complement(473685..474665) 1 NC_007798.1 identified by match to protein family HMM PF03060; enoyl-(acyl-carrier-protein) reductase II 474665 fabK 3931464 fabK Neorickettsia sennetsu str. Miyayama enoyl-(acyl-carrier-protein) reductase II YP_506427.1 473685 R 222891 CDS YP_506428.1 88608763 3931766 474851..475780 1 NC_007798.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY 475780 ftsY 3931766 ftsY Neorickettsia sennetsu str. Miyayama signal recognition particle-docking protein FtsY YP_506428.1 474851 D 222891 CDS YP_506429.1 88608723 3932156 complement(475908..476549) 1 NC_007798.1 identified by similarity to SP:P28692; match to protein family HMM PF01728; ribosomal RNA large subunit methyltransferase J 476549 rrmJ 3932156 rrmJ Neorickettsia sennetsu str. Miyayama ribosomal RNA large subunit methyltransferase J YP_506429.1 475908 R 222891 CDS YP_506430.1 88608604 3931989 complement(476521..477120) 1 NC_007798.1 identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041; thymidylate kinase 477120 tmk 3931989 tmk Neorickettsia sennetsu str. Miyayama thymidylate kinase YP_506430.1 476521 R 222891 CDS YP_506431.1 88608348 3931850 complement(477331..478614) 1 NC_007798.1 identified by similarity to SP:P52993; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01347; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase 478614 sucB 3931850 sucB Neorickettsia sennetsu str. Miyayama 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase YP_506431.1 477331 R 222891 CDS YP_506432.1 88608120 3932112 478825..480198 1 NC_007798.1 identified by similarity to SP:P24231; match to protein family HMM PF01523; pmbA protein 480198 pmbA 3932112 pmbA Neorickettsia sennetsu str. Miyayama pmbA protein YP_506432.1 478825 D 222891 CDS YP_506433.1 88608269 3931719 complement(480332..480502) 1 NC_007798.1 hypothetical protein 480502 3931719 NSE_0550 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506433.1 480332 R 222891 CDS YP_506434.1 88608818 3931686 480515..481075 1 NC_007798.1 identified by match to protein family HMM PF02630; major surface protein 481075 3931686 NSE_0551 Neorickettsia sennetsu str. Miyayama major surface protein YP_506434.1 480515 D 222891 CDS YP_506435.1 88608872 3931610 481270..482754 1 NC_007798.1 identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665; replicative DNA helicase 482754 dnaB 3931610 dnaB Neorickettsia sennetsu str. Miyayama replicative DNA helicase YP_506435.1 481270 D 222891 CDS YP_506436.1 88608127 3932119 complement(482826..483344) 1 NC_007798.1 identified by match to protein family HMM PF04586; match to protein family HMM TIGR01543; HK97 family phage prohead protease 483344 3932119 NSE_0554 Neorickettsia sennetsu str. Miyayama HK97 family phage prohead protease YP_506436.1 482826 R 222891 CDS YP_506437.1 88608621 3932006 complement(483485..483598) 1 NC_007798.1 hypothetical protein 483598 3932006 NSE_0555 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506437.1 483485 R 222891 CDS YP_506438.1 88608500 3931346 complement(483642..484559) 1 NC_007798.1 identified by similarity to SP:P23851; match to protein family HMM PF00849; match to protein family HMM PF01479; ribosomal large subunit pseudouridine synthase C 484559 rluC 3931346 rluC Neorickettsia sennetsu str. Miyayama ribosomal large subunit pseudouridine synthase C YP_506438.1 483642 R 222891 CDS YP_506439.1 88608398 3932302 complement(484534..484653) 1 NC_007798.1 hypothetical protein 484653 3932302 NSE_0557 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506439.1 484534 R 222891 CDS YP_506440.1 88608277 3932011 complement(484685..485629) 1 NC_007798.1 identified by similarity to SP:P09625; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase 485629 trxB 3932011 trxB Neorickettsia sennetsu str. Miyayama thioredoxin-disulfide reductase YP_506440.1 484685 R 222891 CDS YP_506441.1 88608779 3931575 complement(485636..486238) 1 NC_007798.1 identified by similarity to GB:AAM00601.1; match to protein family HMM PF00578; anti-oxidant AhpCTSA family protein 486238 3931575 NSE_0559 Neorickettsia sennetsu str. Miyayama anti-oxidant AhpCTSA family protein YP_506441.1 485636 R 222891 CDS YP_506442.1 88608733 3932166 complement(486392..486811) 1 NC_007798.1 identified by similarity to SP:Q59636; match to protein family HMM PF00334; nucleoside diphosphate kinase 486811 ndk 3932166 ndk Neorickettsia sennetsu str. Miyayama nucleoside diphosphate kinase YP_506442.1 486392 R 222891 CDS YP_506443.1 88608527 3932092 487205..488716 1 NC_007798.1 identified by match to protein family HMM PF03023; MviN family membrane protein 488716 3932092 NSE_0561 Neorickettsia sennetsu str. Miyayama MviN family membrane protein YP_506443.1 487205 D 222891 CDS YP_506444.1 88608883 3932081 complement(488865..488975) 1 NC_007798.1 hypothetical protein 488975 3932081 NSE_0562 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506444.1 488865 R 222891 CDS YP_506445.1 88608077 3931625 488998..490425 1 NC_007798.1 identified by match to protein family HMM PF00361; NADH-ubiquinone/plastoquinone oxidoreductase family protein 490425 3931625 NSE_0563 Neorickettsia sennetsu str. Miyayama NADH-ubiquinone/plastoquinone oxidoreductase family protein YP_506445.1 488998 D 222891 CDS YP_506446.1 88608642 3932172 490534..491160 1 NC_007798.1 hypothetical protein 491160 3932172 NSE_0564 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506446.1 490534 D 222891 CDS YP_506447.1 88608881 3932079 complement(491173..491685) 1 NC_007798.1 hypothetical protein 491685 3932079 NSE_0565 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506447.1 491173 R 222891 CDS YP_506448.1 88608146 3931446 complement(491751..492917) 1 NC_007798.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 492917 nuoD 3931446 nuoD Neorickettsia sennetsu str. Miyayama NADH dehydrogenase subunit D YP_506448.1 491751 R 222891 CDS YP_506449.1 88608354 3931519 complement(493452..493598) 1 NC_007798.1 hypothetical protein 493598 3931519 NSE_0568 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506449.1 493452 R 222891 CDS YP_506450.1 88608228 3932062 complement(493675..494922) 1 NC_007798.1 identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414; seryl-tRNA synthetase 494922 serS 3932062 serS Neorickettsia sennetsu str. Miyayama seryl-tRNA synthetase YP_506450.1 493675 R 222891 CDS YP_506451.1 88608118 3932110 complement(495140..496057) 1 NC_007798.1 identified by similarity to SP:P38436; match to protein family HMM PF01715; tRNA delta(2)-isopentenylpyrophosphate transferase 496057 miaA 3932110 miaA Neorickettsia sennetsu str. Miyayama tRNA delta(2)-isopentenylpyrophosphate transferase YP_506451.1 495140 R 222891 CDS YP_506452.1 88608764 3931767 complement(496071..496367) 1 NC_007798.1 hypothetical protein 496367 3931767 NSE_0571 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506452.1 496071 R 222891 CDS YP_506453.1 88608436 3931374 496793..498628 1 NC_007798.1 identified by similarity to SP:P33927; match to protein family HMM PF01578; CcmF/CcyK/CcsA family cytochrome c biogenesis protein 498628 3931374 NSE_0572 Neorickettsia sennetsu str. Miyayama CcmF/CcyK/CcsA family cytochrome c biogenesis protein YP_506453.1 496793 D 222891 CDS YP_506454.1 88608835 3931703 complement(498625..499701) 1 NC_007798.1 hypothetical protein 499701 3931703 NSE_0573 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506454.1 498625 R 222891 CDS YP_506455.1 88608038 3931494 500346..500927 1 NC_007798.1 identified by similarity to SP:P08576; match to protein family HMM PF01330; holliday junction DNA helicase RuvA 500927 ruvA 3931494 ruvA Neorickettsia sennetsu str. Miyayama holliday junction DNA helicase RuvA YP_506455.1 500346 D 222891 CDS YP_506456.1 88608213 3931683 501204..502199 1 NC_007798.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 502199 ruvB 3931683 ruvB Neorickettsia sennetsu str. Miyayama Holliday junction DNA helicase RuvB YP_506456.1 501204 D 222891 CDS YP_506457.1 88608297 3932259 complement(502182..502415) 1 NC_007798.1 hypothetical protein 502415 3932259 NSE_0576 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506457.1 502182 R 222891 CDS YP_506458.1 88608381 3931356 502361..502465 1 NC_007798.1 hypothetical protein 502465 3931356 NSE_0577 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506458.1 502361 D 222891 CDS YP_506459.1 88608632 3931436 complement(502462..505179) 1 NC_007798.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 505179 sucA 3931436 sucA Neorickettsia sennetsu str. Miyayama 2-oxoglutarate dehydrogenase E1 component YP_506459.1 502462 R 222891 CDS YP_506460.1 88608553 3931732 complement(505364..505951) 1 NC_007798.1 identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein 505951 3931732 NSE_0579 Neorickettsia sennetsu str. Miyayama Sua5/YciO/YrdC/YwlC family protein YP_506460.1 505364 R 222891 CDS YP_506461.1 88608665 3931558 complement(505948..506742) 1 NC_007798.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein 506742 3931558 NSE_0580 Neorickettsia sennetsu str. Miyayama metallo-beta-lactamase family protein YP_506461.1 505948 R 222891 CDS YP_506462.1 88608437 3931375 complement(506739..506942) 1 NC_007798.1 identified by similarity to GB:AAS14115.1; match to protein family HMM PF04384; hypothetical protein 506942 3931375 NSE_0581 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506462.1 506739 R 222891 CDS YP_506463.1 88608362 3931527 complement(507288..507905) 1 NC_007798.1 identified by similarity to SP:P81288; match to protein family HMM PF01479; match to protein family HMM TIGR01017; 30S ribosomal protein S4 507905 rpsD 3931527 rpsD Neorickettsia sennetsu str. Miyayama 30S ribosomal protein S4 YP_506463.1 507288 R 222891 CDS YP_506464.1 88608639 3931916 508090..508188 1 NC_007798.1 hypothetical protein 508188 3931916 NSE_0584 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506464.1 508090 D 222891 CDS YP_506465.1 88608082 3931894 508265..508801 1 NC_007798.1 identified by similarity to SP:P16655; putative cell division protein 508801 3931894 NSE_0585 Neorickettsia sennetsu str. Miyayama putative cell division protein YP_506465.1 508265 D 222891 CDS YP_506466.1 88608859 3931597 508902..509063 1 NC_007798.1 hypothetical protein 509063 3931597 NSE_0586 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506466.1 508902 D 222891 CDS YP_506467.1 88608376 3932033 complement(509055..509597) 1 NC_007798.1 identified by similarity to SP:O33723; match to protein family HMM PF01227; GTP cyclohydrolase I 509597 folE 3932033 folE Neorickettsia sennetsu str. Miyayama GTP cyclohydrolase I YP_506467.1 509055 R 222891 CDS YP_506468.1 88608572 3932282 complement(509581..510390) 1 NC_007798.1 identified by match to protein family HMM PF00231; ATP synthase F1 subunit gamma 510390 atpG 3932282 atpG Neorickettsia sennetsu str. Miyayama ATP synthase F1 subunit gamma YP_506468.1 509581 R 222891 CDS YP_506469.1 88608697 3931797 510437..510613 1 NC_007798.1 hypothetical protein 510613 3931797 NSE_0589 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506469.1 510437 D 222891 CDS YP_506470.1 88607997 3931934 complement(510863..511711) 1 NC_007798.1 identified by similarity to SP:P18579; match to protein family HMM PF01565; putative UDP-N-acetylenolpyruvoylglucosamine reductase 511711 3931934 NSE_0590 Neorickettsia sennetsu str. Miyayama putative UDP-N-acetylenolpyruvoylglucosamine reductase YP_506470.1 510863 R 222891 CDS YP_506471.1 88608130 3932122 511807..513279 1 NC_007798.1 hypothetical protein 513279 3932122 NSE_0591 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506471.1 511807 D 222891 CDS YP_506472.1 88608420 3932202 complement(513388..514326) 1 NC_007798.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 514326 glpX 3932202 glpX Neorickettsia sennetsu str. Miyayama fructose 1,6-bisphosphatase II YP_506472.1 513388 R 222891 CDS YP_506473.1 88608819 3931687 complement(514395..514529) 1 NC_007798.1 hypothetical protein 514529 3931687 NSE_0593 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506473.1 514395 R 222891 CDS YP_506474.1 88608699 3931799 complement(514673..517156) 1 NC_007798.1 identified by similarity to SP:P39814; match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01051; DNA topoisomerase I 517156 topA 3931799 topA Neorickettsia sennetsu str. Miyayama DNA topoisomerase I YP_506474.1 514673 R 222891 CDS YP_506475.1 88608034 3931490 complement(517194..517355) 1 NC_007798.1 hypothetical protein 517355 3931490 NSE_0595 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506475.1 517194 R 222891 CDS YP_506476.1 88608307 3932269 complement(517410..518708) 1 NC_007798.1 hypothetical protein 518708 3932269 NSE_0596 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506476.1 517410 R 222891 CDS YP_506477.1 88608721 3932154 518832..518969 1 NC_007798.1 hypothetical protein 518969 3932154 NSE_0597 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506477.1 518832 D 222891 CDS YP_506478.1 88608149 3931449 complement(519074..519703) 1 NC_007798.1 identified by match to protein family HMM PF01596; O-methyltransferase family protein 519703 3931449 NSE_0598 Neorickettsia sennetsu str. Miyayama O-methyltransferase family protein YP_506478.1 519074 R 222891 CDS YP_506479.1 88608625 3931429 519959..520057 1 NC_007798.1 hypothetical protein 520057 3931429 NSE_0599 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506479.1 519959 D 222891 CDS YP_506480.1 88608648 3932178 520109..522826 1 NC_007798.1 identified by similarity to SP:P25516; match to protein family HMM PF00330; match to protein family HMM PF00694; match to protein family HMM TIGR01341; aconitate hydratase 1 522826 acnA 3932178 acnA Neorickettsia sennetsu str. Miyayama aconitate hydratase 1 YP_506480.1 520109 D 222891 CDS YP_506481.1 88608244 3931466 complement(523005..523976) 1 NC_007798.1 identified by similarity to GB:AAS14410.1; match to protein family HMM PF02636; hypothetical protein 523976 3931466 NSE_0601 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506481.1 523005 R 222891 CDS YP_506482.1 88608291 3932025 complement(524120..524221) 1 NC_007798.1 hypothetical protein 524221 3932025 NSE_0602 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506482.1 524120 R 222891 CDS YP_506483.1 88608717 3931551 complement(524240..526873) 1 NC_007798.1 identified by similarity to SP:Q05873; match to protein family HMM PF00133; putative valyl-tRNA synthetase 526873 3931551 NSE_0603 Neorickettsia sennetsu str. Miyayama putative valyl-tRNA synthetase YP_506483.1 524240 R 222891 CDS YP_506484.1 88607992 3931929 join(527159..527227,527229..528257) 1 NC_007798.1 identified by similarity to SP:P28353; match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020; peptide chain release factor 2, programmed frameshift 528257 prfB 3931929 prfB Neorickettsia sennetsu str. Miyayama peptide chain release factor 2, programmed frameshift YP_506484.1 527159 D 222891 CDS YP_506485.1 88608515 3931395 528480..529865 1 NC_007798.1 hypothetical protein 529865 3931395 NSE_0605 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506485.1 528480 D 222891 CDS YP_506486.1 88608858 3931596 complement(529846..529974) 1 NC_007798.1 hypothetical protein 529974 3931596 NSE_0606 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506486.1 529846 R 222891 CDS YP_506487.1 88608694 3931794 530071..532332 1 NC_007798.1 hypothetical protein 532332 3931794 NSE_0607 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506487.1 530071 D 222891 CDS YP_506488.1 88608047 3932141 532335..532442 1 NC_007798.1 hypothetical protein 532442 3932141 NSE_0608 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506488.1 532335 D 222891 CDS YP_506489.1 88608179 3931746 532652..534610 1 NC_007798.1 identified by similarity to SP:P14160; match to protein family HMM PF01119; match to protein family HMM PF02518; match to protein family HMM TIGR00585; MutL/HexB family DNA mismatch repair protein 534610 mutL 3931746 mutL Neorickettsia sennetsu str. Miyayama MutL/HexB family DNA mismatch repair protein YP_506489.1 532652 D 222891 CDS YP_506490.1 88608683 3931783 534585..534707 1 NC_007798.1 hypothetical protein 534707 3931783 NSE_0610 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506490.1 534585 D 222891 CDS YP_506491.1 88608541 3932106 complement(534762..534890) 1 NC_007798.1 hypothetical protein 534890 3932106 NSE_0611 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506491.1 534762 R 222891 CDS YP_506492.1 88608192 3931759 complement(534862..535863) 1 NC_007798.1 identified by similarity to SP:P12996; match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433; biotin synthase 535863 bioB 3931759 bioB Neorickettsia sennetsu str. Miyayama biotin synthase YP_506492.1 534862 R 222891 CDS YP_506493.1 88608742 3931629 536418..537599 1 NC_007798.1 identified by similarity to SP:P53556; match to protein family HMM PF00155; 8-amino-7-oxononanoate synthase 537599 bioF 3931629 bioF Neorickettsia sennetsu str. Miyayama 8-amino-7-oxononanoate synthase YP_506493.1 536418 D 222891 CDS YP_506494.1 88608178 3931745 537596..538243 1 NC_007798.1 hypothetical protein 538243 3931745 NSE_0614 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506494.1 537596 D 222891 CDS YP_506495.1 88608302 3932264 complement(538355..539107) 1 NC_007798.1 identified by similarity to SP:P12999; match to protein family HMM TIGR02072; biotin biosynthesis protein BioC 539107 bioC 3932264 bioC Neorickettsia sennetsu str. Miyayama biotin biosynthesis protein BioC YP_506495.1 538355 R 222891 CDS YP_506496.1 88608340 3931842 complement(539139..539303) 1 NC_007798.1 hypothetical protein 539303 3931842 NSE_0616 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506496.1 539139 R 222891 CDS YP_506497.1 88608873 3931611 539613..540362 1 NC_007798.1 identified by similarity to SP:P53558; match to protein family HMM TIGR00347; dethiobiotin synthase 540362 bioD 3931611 bioD Neorickettsia sennetsu str. Miyayama dethiobiotin synthase YP_506497.1 539613 D 222891 CDS YP_506498.1 88608024 3931479 540562..541905 1 NC_007798.1 identified by similarity to SP:P22805; match to protein family HMM PF00202; match to protein family HMM TIGR00508; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 541905 bioA 3931479 bioA Neorickettsia sennetsu str. Miyayama adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_506498.1 540562 D 222891 CDS YP_506499.1 88608122 3932114 542305..542535 1 NC_007798.1 hypothetical protein 542535 3932114 NSE_0620 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506499.1 542305 D 222891 CDS YP_506500.1 88608267 3931717 542756..543523 1 NC_007798.1 identified by match to protein family HMM PF00116; match to protein family HMM PF02790; cytochrome c oxidase subunit II 543523 3931717 NSE_0621 Neorickettsia sennetsu str. Miyayama cytochrome c oxidase subunit II YP_506500.1 542756 D 222891 CDS YP_506501.1 88608253 3931475 543552..545111 1 NC_007798.1 identified by similarity to SP:Q08855; match to protein family HMM PF00115; cytochrome c oxidase subunit I 545111 ctaD 3931475 ctaD Neorickettsia sennetsu str. Miyayama cytochrome c oxidase subunit I YP_506501.1 543552 D 222891 CDS YP_506502.1 88608368 3931532 545121..546029 1 NC_007798.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 546029 cyoE 3931532 cyoE Neorickettsia sennetsu str. Miyayama protoheme IX farnesyltransferase YP_506502.1 545121 D 222891 CDS YP_506503.1 88608022 3931477 546044..546565 1 NC_007798.1 identified by similarity to SP:P23136; match to protein family HMM PF00355; match to protein family HMM TIGR01409; match to protein family HMM TIGR01416; ubiquinol-cytochrome c reductase, iron-sulfur subunit 546565 petA 3931477 petA Neorickettsia sennetsu str. Miyayama ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_506503.1 546044 D 222891 CDS YP_506504.1 88608151 3931451 546558..547790 1 NC_007798.1 identified by similarity to SP:P23134; match to protein family HMM PF00032; match to protein family HMM PF00033; ubiquinol-cytochrome c reductase, cytochrome b 547790 petB 3931451 petB Neorickettsia sennetsu str. Miyayama ubiquinol-cytochrome c reductase, cytochrome b YP_506504.1 546558 D 222891 CDS YP_506505.1 88608753 3931640 547800..548570 1 NC_007798.1 identified by match to protein family HMM PF02167; ubiquinol-cytochrome c reductase, cytochrome c1 548570 petC 3931640 petC Neorickettsia sennetsu str. Miyayama ubiquinol-cytochrome c reductase, cytochrome c1 YP_506505.1 547800 D 222891 CDS YP_506506.1 88608870 3931608 548627..550135 1 NC_007798.1 identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR01129; protein-export membrane protein SecD 550135 secD 3931608 secD Neorickettsia sennetsu str. Miyayama protein-export membrane protein SecD YP_506506.1 548627 D 222891 CDS YP_506507.1 88608347 3931849 complement(550420..551112) 1 NC_007798.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 551112 ubiG 3931849 ubiG Neorickettsia sennetsu str. Miyayama 3-demethylubiquinone-9 3-methyltransferase YP_506507.1 550420 R 222891 CDS YP_506508.1 88608629 3931433 complement(551656..552591) 1 NC_007798.1 identified by match to protein family HMM TIGR00747; 3-oxoacyl-(acyl-carrier-protein) synthase III 552591 fabH 3931433 fabH Neorickettsia sennetsu str. Miyayama 3-oxoacyl-(acyl-carrier-protein) synthase III YP_506508.1 551656 R 222891 CDS YP_506509.1 88608261 3931711 complement(552631..552756) 1 NC_007798.1 hypothetical protein 552756 3931711 NSE_0631 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506509.1 552631 R 222891 CDS YP_506510.1 88607960 3932072 complement(553012..554043) 1 NC_007798.1 identified by similarity to SP:P71018; match to protein family HMM PF02504; match to protein family HMM TIGR00182; fatty acid/phospholipid synthesis protein PlsX 554043 plsX 3932072 plsX Neorickettsia sennetsu str. Miyayama fatty acid/phospholipid synthesis protein PlsX YP_506510.1 553012 R 222891 CDS YP_506511.1 88608264 3931714 complement(554089..554280) 1 NC_007798.1 identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; 50S ribosomal protein L32 554280 rpmF 3931714 rpmF Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L32 YP_506511.1 554089 R 222891 CDS YP_506512.1 88608451 3932041 complement(554332..554463) 1 NC_007798.1 hypothetical protein 554463 3932041 NSE_0634 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506512.1 554332 R 222891 CDS YP_506513.1 88608615 3932000 complement(554526..557177) 1 NC_007798.1 hypothetical protein 557177 3932000 NSE_0635 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506513.1 554526 R 222891 CDS YP_506514.1 88608494 3931340 complement(557420..557965) 1 NC_007798.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 557965 nuoE 3931340 nuoE Neorickettsia sennetsu str. Miyayama NADH dehydrogenase subunit E YP_506514.1 557420 R 222891 CDS YP_506515.1 88608734 3932167 complement(557950..559326) 1 NC_007798.1 identified by similarity to SP:P27854; match to protein family HMM PF03109; putative ubiquinone biosynthesis protein 559326 3932167 NSE_0637 Neorickettsia sennetsu str. Miyayama putative ubiquinone biosynthesis protein YP_506515.1 557950 R 222891 CDS YP_506516.1 88608808 3931862 559592..560170 1 NC_007798.1 identified by similarity to GB:AAS14721.1; hypothetical protein 560170 3931862 NSE_0638 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506516.1 559592 D 222891 CDS YP_506517.1 88608139 3931439 560234..560359 1 NC_007798.1 hypothetical protein 560359 3931439 NSE_0639 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506517.1 560234 D 222891 CDS YP_506518.1 88608036 3931492 560508..560789 1 NC_007798.1 identified by similarity to SP:P02341; match to protein family HMM PF00216; DNA-binding protein HU 560789 hup 3931492 hup Neorickettsia sennetsu str. Miyayama DNA-binding protein HU YP_506518.1 560508 D 222891 CDS YP_506519.1 88608408 3932037 560830..561567 1 NC_007798.1 identified by similarity to PIR:AC3292; match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 561567 3932037 NSE_0641 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506519.1 560830 D 222891 CDS YP_506520.1 88608250 3931472 complement(561722..563368) 1 NC_007798.1 identified by match to protein family HMM PF00118; match to protein family HMM TIGR02348; 60 kDa chaperonin 563368 groEL 3931472 groEL Neorickettsia sennetsu str. Miyayama 60 kDa chaperonin YP_506520.1 561722 R 222891 CDS YP_506521.1 88608649 3932179 complement(563368..563664) 1 NC_007798.1 identified by match to protein family HMM PF00166; 10 kDa chaperonin 563664 groES 3932179 groES Neorickettsia sennetsu str. Miyayama 10 kDa chaperonin YP_506521.1 563368 R 222891 CDS YP_506522.1 88608853 3931662 complement(563811..564755) 1 NC_007798.1 hypothetical protein 564755 3931662 NSE_0644 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506522.1 563811 R 222891 CDS YP_506523.1 88608708 3931542 complement(564755..566539) 1 NC_007798.1 rotamase family protein 566539 3931542 NSE_0645 Neorickettsia sennetsu str. Miyayama rotamase family protein YP_506523.1 564755 R 222891 CDS YP_506524.1 88608101 3931972 566524..567702 1 NC_007798.1 identified by similarity to SP:P42977; match to protein family HMM PF01743; polyA polymerase family protein 567702 3931972 NSE_0646 Neorickettsia sennetsu str. Miyayama polyA polymerase family protein YP_506524.1 566524 D 222891 CDS YP_506525.1 88608005 3931942 complement(567927..568637) 1 NC_007798.1 hypothetical protein 568637 3931942 NSE_0647 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506525.1 567927 R 222891 CDS YP_506526.1 88608067 3931814 568321..568704 1 NC_007798.1 hypothetical protein 568704 3931814 NSE_0648 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506526.1 568321 D 222891 CDS YP_506527.1 88608102 3931973 complement(569117..569749) 1 NC_007798.1 identified by match to protein family HMM PF00926; match to protein family HMM TIGR00506; 3,4-dihydroxy-2-butanone 4-phosphate synthase 569749 ribB 3931973 ribB Neorickettsia sennetsu str. Miyayama 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_506527.1 569117 R 222891 CDS YP_506528.1 88608510 3931390 570007..572436 1 NC_007798.1 identified by match to protein family HMM PF01580; putative cell division protein FtsK 572436 3931390 NSE_0650 Neorickettsia sennetsu str. Miyayama putative cell division protein FtsK YP_506528.1 570007 D 222891 CDS YP_506529.1 88608366 3931530 complement(572581..573027) 1 NC_007798.1 putative lipoprotein 573027 3931530 NSE_0651 Neorickettsia sennetsu str. Miyayama putative lipoprotein YP_506529.1 572581 R 222891 CDS YP_506530.1 88608160 3931499 573682..573849 1 NC_007798.1 hypothetical protein 573849 3931499 NSE_0652 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506530.1 573682 D 222891 CDS YP_506531.1 88607970 3931414 573905..574333 1 NC_007798.1 hypothetical protein 574333 3931414 NSE_0653 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506531.1 573905 D 222891 CDS YP_506532.1 88608286 3932020 complement(574330..574575) 1 NC_007798.1 hypothetical protein 574575 3932020 NSE_0654 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506532.1 574330 R 222891 CDS YP_506533.1 88608455 3931821 574647..574877 1 NC_007798.1 hypothetical protein 574877 3931821 NSE_0655 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506533.1 574647 D 222891 CDS YP_506534.1 88608586 3931909 575151..575558 1 NC_007798.1 hypothetical protein 575558 3931909 NSE_0656 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506534.1 575151 D 222891 CDS YP_506535.1 88608237 3931459 575864..575971 1 NC_007798.1 hypothetical protein 575971 3931459 NSE_0657 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506535.1 575864 D 222891 CDS YP_506536.1 88608552 3931731 complement(575957..576598) 1 NC_007798.1 identified by match to protein family HMM PF00583; acetyltransferase 576598 3931731 NSE_0658 Neorickettsia sennetsu str. Miyayama acetyltransferase YP_506536.1 575957 R 222891 CDS YP_506537.1 88608765 3931768 complement(576750..577163) 1 NC_007798.1 hypothetical protein 577163 3931768 NSE_0659 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506537.1 576750 R 222891 CDS YP_506538.1 88608623 3931427 complement(577418..577534) 1 NC_007798.1 hypothetical protein 577534 3931427 NSE_0660 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506538.1 577418 R 222891 CDS YP_506539.1 88608202 3931672 complement(577652..581383) 1 NC_007798.1 identified by similarity to PIR:E97700; match to protein family HMM PF00970; FAD-binding domain-containing protein 581383 3931672 NSE_0661 Neorickettsia sennetsu str. Miyayama FAD-binding domain-containing protein YP_506539.1 577652 R 222891 CDS YP_506540.1 88608328 3932236 581296..581496 1 NC_007798.1 hypothetical protein 581496 3932236 NSE_0662 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506540.1 581296 D 222891 CDS YP_506541.1 88608053 3932147 complement(581656..582111) 1 NC_007798.1 identified by similarity to SP:P21774; match to protein family HMM PF07977; beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ 582111 fabZ 3932147 fabZ Neorickettsia sennetsu str. Miyayama beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ YP_506541.1 581656 R 222891 CDS YP_506542.1 88608882 3932080 complement(582118..582741) 1 NC_007798.1 hypothetical protein 582741 3932080 NSE_0664 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506542.1 582118 R 222891 CDS YP_506543.1 88608352 3931517 complement(582931..583671) 1 NC_007798.1 identified by similarity to SP:P25716; match to protein family HMM PF00106; 3-oxoacyl-[acyl-carrier protein] reductase 583671 fabG 3931517 fabG Neorickettsia sennetsu str. Miyayama 3-oxoacyl-[acyl-carrier protein] reductase YP_506543.1 582931 R 222891 CDS YP_506544.1 88608098 3931969 583717..583833 1 NC_007798.1 hypothetical protein 583833 3931969 NSE_0666 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506544.1 583717 D 222891 CDS YP_506545.1 88608239 3931461 complement(584101..584556) 1 NC_007798.1 identified by similarity to SP:P00647; match to protein family HMM PF00075; ribonuclease HI 584556 rnhA 3931461 rnhA Neorickettsia sennetsu str. Miyayama ribonuclease HI YP_506545.1 584101 R 222891 CDS YP_506546.1 88608309 3932271 complement(584986..585708) 1 NC_007798.1 identified by similarity to GB:AAK22816.1; hypothetical protein 585708 3932271 NSE_0668 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506546.1 584986 R 222891 CDS YP_506547.1 88608560 3931739 complement(585762..586241) 1 NC_007798.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 586241 greA 3931739 greA Neorickettsia sennetsu str. Miyayama transcription elongation factor GreA YP_506547.1 585762 R 222891 CDS YP_506548.1 88608463 3931829 586222..586410 1 NC_007798.1 hypothetical protein 586410 3931829 NSE_0670 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506548.1 586222 D 222891 CDS YP_506549.1 88608170 3931509 586511..587917 1 NC_007798.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01350; dihydrolipoamide dehydrogenase 587917 lpdA-2 3931509 lpdA-2 Neorickettsia sennetsu str. Miyayama dihydrolipoamide dehydrogenase YP_506549.1 586511 D 222891 CDS YP_506550.1 88608087 3931899 complement(587934..588491) 1 NC_007798.1 hypothetical protein 588491 3931899 NSE_0672 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506550.1 587934 R 222891 CDS YP_506551.1 88608424 3932206 complement(588599..590389) 1 NC_007798.1 identified by similarity to SP:Q9EXN7; match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; GTP-binding protein TypA 590389 typA 3932206 typA Neorickettsia sennetsu str. Miyayama GTP-binding protein TypA YP_506551.1 588599 R 222891 CDS YP_506552.1 88608375 3932032 complement(590382..590546) 1 NC_007798.1 hypothetical protein 590546 3932032 NSE_0674 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506552.1 590382 R 222891 CDS YP_506553.1 88608724 3932157 590702..593191 1 NC_007798.1 identified by similarity to SP:O34996; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593; DNA polymerase I 593191 polA 3932157 polA Neorickettsia sennetsu str. Miyayama DNA polymerase I YP_506553.1 590702 D 222891 CDS YP_506554.1 88608839 3931648 complement(593233..594057) 1 NC_007798.1 identified by match to protein family HMM PF00510; cytochrome c oxidase subunit III 594057 3931648 NSE_0676 Neorickettsia sennetsu str. Miyayama cytochrome c oxidase subunit III YP_506554.1 593233 R 222891 CDS YP_506555.1 88608346 3931848 complement(594093..598220) 1 NC_007798.1 identified by similarity to SP:Q9ZE20; match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000; match to protein family HMM TIGR02386; DNA-directed RNA polymerase subunit beta' 598220 rpoC 3931848 rpoC Neorickettsia sennetsu str. Miyayama DNA-directed RNA polymerase subunit beta' YP_506555.1 594093 R 222891 CDS YP_506556.1 88608380 3931355 complement(598275..602351) 1 NC_007798.1 identified by similarity to GB:AAP75727.1; match to protein family HMM PF00562; match to protein family HMM PF04560; match to protein family HMM PF04561; match to protein family HMM PF04565; match to protein family HMM TIGR02013; DNA-directed RNA polymerase subunit beta 602351 rpoB 3931355 rpoB Neorickettsia sennetsu str. Miyayama DNA-directed RNA polymerase subunit beta YP_506556.1 598275 R 222891 CDS YP_506557.1 88608716 3931550 complement(602388..602801) 1 NC_007798.1 identified by similarity to SP:P29396; match to protein family HMM PF00542; 50S ribosomal protein L7/L12 602801 rplL 3931550 rplL Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L7/L12 YP_506557.1 602388 R 222891 CDS YP_506558.1 88608880 3932078 complement(602843..603367) 1 NC_007798.1 identified by match to protein family HMM PF00466; 50S ribosomal protein L10 603367 rplJ 3932078 rplJ Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L10 YP_506558.1 602843 R 222891 CDS YP_506559.1 88608488 3932130 complement(603379..604008) 1 NC_007798.1 identified by similarity to SP:P04447; match to protein family HMM PF00687; 50S ribosomal protein L1 604008 rplA 3932130 rplA Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L1 YP_506559.1 603379 R 222891 CDS YP_506560.1 88608431 3931369 complement(604010..604432) 1 NC_007798.1 identified by similarity to SP:P29395; match to protein family HMM PF03946; 50S ribosomal protein L11 604432 rplK 3931369 rplK Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L11 YP_506560.1 604010 R 222891 CDS YP_506561.1 88608554 3931733 complement(604461..604991) 1 NC_007798.1 identified by similarity to SP:P16921; putative transcription termination/antitermination factor NusG 604991 3931733 NSE_0683 Neorickettsia sennetsu str. Miyayama putative transcription termination/antitermination factor NusG YP_506561.1 604461 R 222891 CDS YP_506562.1 88608140 3931440 complement(604996..605178) 1 NC_007798.1 identified by similarity to SP:Q06799; match to protein family HMM PF00584; match to protein family HMM TIGR00964; preprotein translocase subunit SecE 605178 secE 3931440 secE Neorickettsia sennetsu str. Miyayama preprotein translocase subunit SecE YP_506562.1 604996 R 222891 CDS YP_506563.1 88608355 3931520 complement(605262..606554) 1 NC_007798.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 606554 tuf 3931520 tuf Neorickettsia sennetsu str. Miyayama elongation factor Tu YP_506563.1 605262 R 222891 CDS YP_506564.1 88608233 3932067 complement(606585..608663) 1 NC_007798.1 identified by similarity to SP:P41084; match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231; match to protein family HMM TIGR00484; translation elongation factor G 608663 fusA 3932067 fusA Neorickettsia sennetsu str. Miyayama translation elongation factor G YP_506564.1 606585 R 222891 CDS YP_506565.1 88608538 3932103 complement(608672..609199) 1 NC_007798.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 609199 rpsG 3932103 rpsG Neorickettsia sennetsu str. Miyayama 30S ribosomal protein S7 YP_506565.1 608672 R 222891 CDS YP_506566.2 161511034 3932187 complement(609211..609579) 1 NC_007798.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 609579 rpsL 3932187 rpsL Neorickettsia sennetsu str. Miyayama 30S ribosomal protein S12 YP_506566.2 609211 R 222891 CDS YP_506567.1 88608747 3931634 complement(609646..611673) 1 NC_007798.1 identified by similarity to SP:Q54900; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; ATP-dependent DNA helicase RecG 611673 recG 3931634 recG Neorickettsia sennetsu str. Miyayama ATP-dependent DNA helicase RecG YP_506567.1 609646 R 222891 CDS YP_506568.1 88608616 3932001 611895..613256 1 NC_007798.1 identified by similarity to SP:P29925; match to protein family HMM PF00361; match to protein family HMM TIGR01972; NADH dehydrogenase I subunit M 613256 nuoM 3932001 nuoM Neorickettsia sennetsu str. Miyayama NADH dehydrogenase I subunit M YP_506568.1 611895 D 222891 CDS YP_506569.1 88608865 3931603 613253..614629 1 NC_007798.1 identified by similarity to SP:P50973; match to protein family HMM PF00361; NADH dehydrogenase I subunit N 614629 nuoN 3931603 nuoN Neorickettsia sennetsu str. Miyayama NADH dehydrogenase I subunit N YP_506569.1 613253 D 222891 CDS YP_506570.1 88608177 3931744 614856..615536 1 NC_007798.1 identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM TIGR00121; biotin--acetyl-CoA-carboxylase ligase 615536 3931744 NSE_0693 Neorickettsia sennetsu str. Miyayama biotin--acetyl-CoA-carboxylase ligase YP_506570.1 614856 D 222891 CDS YP_506571.1 88607980 3931424 615713..616483 1 NC_007798.1 identified by similarity to SP:O66126; match to protein family HMM PF00348; putative geranyltranstransferase 616483 3931424 NSE_0694 Neorickettsia sennetsu str. Miyayama putative geranyltranstransferase YP_506571.1 615713 D 222891 CDS YP_506572.1 88608196 3931666 complement(617009..617827) 1 NC_007798.1 identified by similarity to SP:P78061; match to protein family HMM PF00120; glutamine synthetase domain-containing protein 617827 3931666 NSE_0696 Neorickettsia sennetsu str. Miyayama glutamine synthetase domain-containing protein YP_506572.1 617009 R 222891 CDS YP_506573.1 88608548 3931727 617994..618746 1 NC_007798.1 identified by similarity to PIR:A97716; match to protein family HMM PF02405; putative ABC transporter permease 618746 3931727 NSE_0697 Neorickettsia sennetsu str. Miyayama putative ABC transporter permease YP_506573.1 617994 D 222891 CDS YP_506574.1 88608687 3931787 618736..619464 1 NC_007798.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 619464 3931787 NSE_0698 Neorickettsia sennetsu str. Miyayama ABC transporter ATP-binding protein YP_506574.1 618736 D 222891 CDS YP_506575.1 88608806 3931860 619457..620374 1 NC_007798.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 620374 3931860 NSE_0699 Neorickettsia sennetsu str. Miyayama ABC transporter ATP-binding protein YP_506575.1 619457 D 222891 CDS YP_506576.1 88608388 3931363 complement(620512..620931) 1 NC_007798.1 identified by similarity to SP:Q9ZED0; match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein 620931 3931363 NSE_0700 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506576.1 620512 R 222891 CDS YP_506577.1 88608875 3931613 621093..621680 1 NC_007798.1 identified by similarity to SP:P10442; match to protein family HMM PF01351; ribonuclease HII 621680 rnhB 3931613 rnhB Neorickettsia sennetsu str. Miyayama ribonuclease HII YP_506577.1 621093 D 222891 CDS YP_506578.1 88608533 3932098 621682..621807 1 NC_007798.1 hypothetical protein 621807 3932098 NSE_0702 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506578.1 621682 D 222891 CDS YP_506579.1 88608849 3931658 621872..622339 1 NC_007798.1 hypothetical protein 622339 3931658 NSE_0703 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506579.1 621872 D 222891 CDS YP_506580.1 88608303 3932265 622578..624836 1 NC_007798.1 identified by similarity to SP:P51010; match to protein family HMM PF00456; match to protein family HMM PF02779; transketolase, insertion 624836 3932265 NSE_0704 Neorickettsia sennetsu str. Miyayama transketolase, insertion YP_506580.1 622578 D 222891 CDS YP_506581.1 88607973 3931417 624915..625007 1 NC_007798.1 hypothetical protein 625007 3931417 NSE_0705 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506581.1 624915 D 222891 CDS YP_506582.1 88608391 3932295 625046..626422 1 NC_007798.1 identified by match to protein family HMM PF00361; NADH-ubiquinone/plastoquinone oxidoreductase family protein 626422 3932295 NSE_0706 Neorickettsia sennetsu str. Miyayama NADH-ubiquinone/plastoquinone oxidoreductase family protein YP_506582.1 625046 D 222891 CDS YP_506583.1 88608296 3932258 complement(626414..628297) 1 NC_007798.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 628297 gidA 3932258 gidA Neorickettsia sennetsu str. Miyayama tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_506583.1 626414 R 222891 CDS YP_506584.1 88608826 3931694 complement(628297..628917) 1 NC_007798.1 hypothetical protein 628917 3931694 NSE_0708 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506584.1 628297 R 222891 CDS YP_506585.1 88608002 3931939 629009..629338 1 NC_007798.1 identified by similarity to GB:AAS14667.1; hypothetical protein 629338 3931939 NSE_0709 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506585.1 629009 D 222891 CDS YP_506586.1 88608557 3931736 629429..629944 1 NC_007798.1 identified by similarity to GB:BAB53707.1; match to protein family HMM PF03548; hypothetical protein 629944 3931736 NSE_0710 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506586.1 629429 D 222891 CDS YP_506587.1 88608545 3931724 630340..630876 1 NC_007798.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; putative nicotinate (nicotinamide) nucleotide adenylyltransferase 630876 3931724 NSE_0711 Neorickettsia sennetsu str. Miyayama putative nicotinate (nicotinamide) nucleotide adenylyltransferase YP_506587.1 630340 D 222891 CDS YP_506588.1 88608252 3931474 631369..633102 1 NC_007798.1 identified by similarity to GB:AAA62789.1; match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 633102 recJ 3931474 recJ Neorickettsia sennetsu str. Miyayama single-stranded-DNA-specific exonuclease RecJ YP_506588.1 631369 D 222891 CDS YP_506589.1 88608063 3931810 complement(633366..633470) 1 NC_007798.1 hypothetical protein 633470 3931810 NSE_0713 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506589.1 633366 R 222891 CDS YP_506590.1 88608878 3932076 633479..634720 1 NC_007798.1 part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 634720 nuoF 3932076 nuoF Neorickettsia sennetsu str. Miyayama NADH dehydrogenase I subunit F YP_506590.1 633479 D 222891 CDS YP_506591.1 88608449 3932241 complement(634781..636109) 1 NC_007798.1 identified by similarity to SP:Q05865; match to protein family HMM TIGR01499; folylpolyglutamate synthase 636109 folC 3932241 folC Neorickettsia sennetsu str. Miyayama folylpolyglutamate synthase YP_506591.1 634781 R 222891 CDS YP_506592.1 88608813 3931867 636138..636353 1 NC_007798.1 hypothetical protein 636353 3931867 NSE_0716 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506592.1 636138 D 222891 CDS YP_506593.1 88608741 3931628 complement(636509..638161) 1 NC_007798.1 identified by similarity to SP:P25522; match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00450; match to protein family HMM TIGR00650; tRNA modification GTPase TrmE 638161 trmE 3931628 trmE Neorickettsia sennetsu str. Miyayama tRNA modification GTPase TrmE YP_506593.1 636509 R 222891 CDS YP_506594.1 88608737 3932170 complement(638165..640399) 1 NC_007798.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244; OMP85 family outer membrane protein 640399 3932170 NSE_0718 Neorickettsia sennetsu str. Miyayama OMP85 family outer membrane protein YP_506594.1 638165 R 222891 CDS YP_506595.1 88607986 3931923 complement(640403..641503) 1 NC_007798.1 identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054; putative membrane-associated zinc metalloprotease 641503 3931923 NSE_0719 Neorickettsia sennetsu str. Miyayama putative membrane-associated zinc metalloprotease YP_506595.1 640403 R 222891 CDS YP_506596.1 88608108 3931979 complement(641711..642550) 1 NC_007798.1 identified by match to protein family HMM PF00288; putative 4-diphosphocytidyl-2C-methyl-D-erythritol kinase 642550 3931979 NSE_0720 Neorickettsia sennetsu str. Miyayama putative 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YP_506596.1 641711 R 222891 CDS YP_506597.1 88608222 3932056 complement(642578..644929) 1 NC_007798.1 identified by similarity to SP:P06982; match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059; DNA gyrase subunit B 644929 gyrB 3932056 gyrB Neorickettsia sennetsu str. Miyayama DNA gyrase subunit B YP_506597.1 642578 R 222891 CDS YP_506598.1 88608272 3931722 complement(645080..645178) 1 NC_007798.1 hypothetical protein 645178 3931722 NSE_0722 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506598.1 645080 R 222891 CDS YP_506599.1 88608278 3932012 645288..645776 1 NC_007798.1 identified by match to protein family HMM PF00578; bacterioferritin comigratory protein 645776 bcp 3932012 bcp Neorickettsia sennetsu str. Miyayama bacterioferritin comigratory protein YP_506599.1 645288 D 222891 CDS YP_506600.1 88608369 3931533 645945..647351 1 NC_007798.1 identified by similarity to PIR:T48676; match to protein family HMM PF00474; putative sodium:proline symporter 647351 3931533 NSE_0724 Neorickettsia sennetsu str. Miyayama putative sodium:proline symporter YP_506600.1 645945 D 222891 CDS YP_506601.1 88607990 3931927 647332..649038 1 NC_007798.1 identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 649038 3931927 NSE_0725 Neorickettsia sennetsu str. Miyayama pentapeptide repeat-containing protein YP_506601.1 647332 D 222891 CDS YP_506602.1 88608460 3931826 649064..649684 1 NC_007798.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 649684 gmk 3931826 gmk Neorickettsia sennetsu str. Miyayama guanylate kinase YP_506602.1 649064 D 222891 CDS YP_506603.1 88608212 3931682 complement(649735..649923) 1 NC_007798.1 hypothetical protein 649923 3931682 NSE_0727 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506603.1 649735 R 222891 CDS YP_506604.1 88607968 3931412 complement(650089..650205) 1 NC_007798.1 hypothetical protein 650205 3931412 NSE_0728 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506604.1 650089 R 222891 CDS YP_506605.1 88608804 3931858 complement(650226..651071) 1 NC_007798.1 hypothetical protein 651071 3931858 NSE_0729 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506605.1 650226 R 222891 CDS YP_506606.1 88608282 3932016 651157..652353 1 NC_007798.1 identified by similarity to SP:P51042; match to protein family HMM PF00285; citrate synthase 652353 gltA 3932016 gltA Neorickettsia sennetsu str. Miyayama citrate synthase YP_506606.1 651157 D 222891 CDS YP_506607.1 88608636 3932039 complement(652317..652538) 1 NC_007798.1 hypothetical protein 652538 3932039 NSE_0731 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506607.1 652317 R 222891 CDS YP_506608.1 88608000 3931937 complement(652516..653439) 1 NC_007798.1 hypothetical protein 653439 3931937 NSE_0732 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506608.1 652516 R 222891 CDS YP_506609.1 88608407 3932036 complement(653439..654680) 1 NC_007798.1 identified by similarity to SP:P37869; match to protein family HMM PF00113; match to protein family HMM PF03952; match to protein family HMM TIGR01060; enolase 654680 eno 3932036 eno Neorickettsia sennetsu str. Miyayama enolase YP_506609.1 653439 R 222891 CDS YP_506610.1 88608039 3932133 654760..655278 1 NC_007798.1 identified by similarity to SP:P17288; match to protein family HMM PF00719; inorganic pyrophosphatase 655278 ppa 3932133 ppa Neorickettsia sennetsu str. Miyayama inorganic pyrophosphatase YP_506610.1 654760 D 222891 CDS YP_506611.1 88608691 3931791 complement(655545..656363) 1 NC_007798.1 identified by similarity to GB:AAS14435.1; hypothetical protein 656363 3931791 NSE_0735 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506611.1 655545 R 222891 CDS YP_506612.1 88608886 3932084 complement(656369..656461) 1 NC_007798.1 hypothetical protein 656461 3932084 NSE_0736 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506612.1 656369 R 222891 CDS YP_506613.1 88608680 3931573 complement(656477..657706) 1 NC_007798.1 identified by similarity to SP:P04805; match to protein family HMM PF00749; match to protein family HMM TIGR00464; glutamyl-tRNA synthetase 657706 gltX-2 3931573 gltX-2 Neorickettsia sennetsu str. Miyayama glutamyl-tRNA synthetase YP_506613.1 656477 R 222891 CDS YP_506614.1 88608162 3931501 complement(657802..658377) 1 NC_007798.1 identified by similarity to SP:O66905; match to protein family HMM PF02660; hypothetical protein 658377 3931501 NSE_0738 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506614.1 657802 R 222891 CDS YP_506615.1 88608007 3931944 complement(658571..660496) 1 NC_007798.1 identified by similarity to GB:AAM00416.1; match to protein family HMM PF02534; type IV secretion system component VirD4 660496 virD4 3931944 virD4 Neorickettsia sennetsu str. Miyayama type IV secretion system component VirD4 YP_506615.1 658571 R 222891 CDS YP_506616.1 88608308 3932270 complement(660527..661522) 1 NC_007798.1 identified by similarity to GB:AAM00414.1; match to protein family HMM PF00437; type IV secretion system ATPase VirB11 661522 virB11 3932270 virB11 Neorickettsia sennetsu str. Miyayama type IV secretion system ATPase VirB11 YP_506616.1 660527 R 222891 CDS YP_506617.1 88608478 3932221 complement(661528..662901) 1 NC_007798.1 identified by similarity to GB:AAM00413.1; match to protein family HMM PF03743; type IV secretion system protein VirB10 662901 virB10 3932221 virB10 Neorickettsia sennetsu str. Miyayama type IV secretion system protein VirB10 YP_506617.1 661528 R 222891 CDS YP_506618.1 88608571 3932281 complement(662908..663630) 1 NC_007798.1 identified by similarity to GB:AAM00421.1; match to protein family HMM PF03524; type IV secretion system protein VirB9 663630 virB9-2 3932281 virB9-2 Neorickettsia sennetsu str. Miyayama type IV secretion system protein VirB9 YP_506618.1 662908 R 222891 CDS YP_506619.1 88608885 3932083 complement(663617..664294) 1 NC_007798.1 identified by similarity to GB:AAM00420.1; match to protein family HMM PF04335; type IV secretion system protein VirB8 664294 virB8-2 3932083 virB8-2 Neorickettsia sennetsu str. Miyayama type IV secretion system protein VirB8 YP_506619.1 663617 R 222891 CDS YP_506620.1 88608672 3931565 complement(664338..664511) 1 NC_007798.1 hypothetical protein 664511 3931565 NSE_0744 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506620.1 664338 R 222891 CDS YP_506621.1 88608776 3931779 complement(664568..665629) 1 NC_007798.1 identified by similarity to SP:P43525; match to protein family HMM PF00925; match to protein family HMM TIGR00505; GTP cyclohydrolase II 665629 ribA 3931779 ribA Neorickettsia sennetsu str. Miyayama GTP cyclohydrolase II YP_506621.1 664568 R 222891 CDS YP_506622.1 88608183 3931750 665846..666844 1 NC_007798.1 catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acyltransferase within the complex. The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2); it contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase; pyruvate dehydrogenase subunit beta 666844 3931750 NSE_0746 Neorickettsia sennetsu str. Miyayama pyruvate dehydrogenase subunit beta YP_506622.1 665846 D 222891 CDS YP_506623.1 88608003 3931940 complement(667003..667134) 1 NC_007798.1 hypothetical protein 667134 3931940 NSE_0747 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506623.1 667003 R 222891 CDS YP_506624.1 88608602 3932254 667199..667462 1 NC_007798.1 hypothetical protein 667462 3932254 NSE_0748 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506624.1 667199 D 222891 CDS YP_506625.1 88608397 3932301 667645..667968 1 NC_007798.1 hypothetical protein 667968 3932301 NSE_0749 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506625.1 667645 D 222891 CDS YP_506626.1 88608214 3931684 668086..669387 1 NC_007798.1 identified by similarity to SP:P22257; match to protein family HMM PF00254; putative trigger factor 669387 3931684 NSE_0751 Neorickettsia sennetsu str. Miyayama putative trigger factor YP_506626.1 668086 D 222891 CDS YP_506627.1 88608072 3931620 669394..670029 1 NC_007798.1 identified by similarity to SP:P19245; match to protein family HMM PF00574; ATP-dependent Clp protease, proteolytic subunit ClpP 670029 clpP 3931620 clpP Neorickettsia sennetsu str. Miyayama ATP-dependent Clp protease, proteolytic subunit ClpP YP_506627.1 669394 D 222891 CDS YP_506628.1 88608107 3931978 670013..671215 1 NC_007798.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 671215 clpX 3931978 clpX Neorickettsia sennetsu str. Miyayama ATP-dependent protease ATP-binding subunit ClpX YP_506628.1 670013 D 222891 CDS YP_506629.1 88608238 3931460 complement(671212..671406) 1 NC_007798.1 hypothetical protein 671406 3931460 NSE_0754 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506629.1 671212 R 222891 CDS YP_506630.1 88608834 3931702 672044..672343 1 NC_007798.1 identified by similarity to GB:AAS14513.1; hypothetical protein 672343 3931702 NSE_0755 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506630.1 672044 D 222891 CDS YP_506631.1 88608720 3932153 complement(672338..674428) 1 NC_007798.1 identified by similarity to SP:P00961; match to protein family HMM PF02092; match to protein family HMM PF05746; match to protein family HMM TIGR00211; glycyl-tRNA synthetase subunit beta 674428 glyS 3932153 glyS Neorickettsia sennetsu str. Miyayama glycyl-tRNA synthetase subunit beta YP_506631.1 672338 R 222891 CDS YP_506632.1 88608155 3931455 complement(674421..675338) 1 NC_007798.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 675338 glyQ 3931455 glyQ Neorickettsia sennetsu str. Miyayama glycyl-tRNA synthetase subunit alpha YP_506632.1 674421 R 222891 CDS YP_506633.1 88608084 3931896 complement(675374..676567) 1 NC_007798.1 identified by similarity to SP:Q02635; match to protein family HMM PF00155; aspartate aminotransferase 676567 3931896 NSE_0758 Neorickettsia sennetsu str. Miyayama aspartate aminotransferase YP_506633.1 675374 R 222891 CDS YP_506634.1 88608751 3931638 676858..677313 1 NC_007798.1 identified by similarity to SP:P02339; match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein 677313 ssb 3931638 ssb Neorickettsia sennetsu str. Miyayama single-strand binding protein YP_506634.1 676858 D 222891 CDS YP_506635.1 88608524 3931405 complement(677454..678044) 1 NC_007798.1 identified by similarity to GB:AAS14534.1; match to protein family HMM TIGR02396; hypothetical protein 678044 3931405 NSE_0760 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506635.1 677454 R 222891 CDS YP_506636.1 88608738 3932171 complement(678060..678704) 1 NC_007798.1 identified by similarity to SP:P19669; match to protein family HMM PF00923; match to protein family HMM TIGR00875; putative transaldolase 678704 3932171 NSE_0761 Neorickettsia sennetsu str. Miyayama putative transaldolase YP_506636.1 678060 R 222891 CDS YP_506637.1 88608001 3931938 complement(678708..679043) 1 NC_007798.1 identified by similarity to PIR:S29042; match to protein family HMM PF02823; ATP synthase F1 subunit epsilon 679043 atpC 3931938 atpC Neorickettsia sennetsu str. Miyayama ATP synthase F1 subunit epsilon YP_506637.1 678708 R 222891 CDS YP_506638.1 88608676 3931569 complement(679044..680468) 1 NC_007798.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 680468 atpD 3931569 atpD Neorickettsia sennetsu str. Miyayama F0F1 ATP synthase subunit beta YP_506638.1 679044 R 222891 CDS YP_506639.1 88608801 3931855 complement(680526..680636) 1 NC_007798.1 hypothetical protein 680636 3931855 NSE_0764 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506639.1 680526 R 222891 CDS YP_506640.1 88608696 3931796 complement(680608..683121) 1 NC_007798.1 hypothetical protein 683121 3931796 NSE_0765 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506640.1 680608 R 222891 CDS YP_506641.1 88608288 3932022 complement(683112..685364) 1 NC_007798.1 identified by similarity to GB:AAM00400.1; type IV secretion system protein VirB4 685364 virB4-1 3932022 virB4-1 Neorickettsia sennetsu str. Miyayama type IV secretion system protein VirB4 YP_506641.1 683112 R 222891 CDS YP_506642.1 88608473 3932216 complement(685354..685494) 1 NC_007798.1 hypothetical protein 685494 3932216 NSE_0767 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506642.1 685354 R 222891 CDS YP_506643.1 88608417 3932199 complement(685452..685817) 1 NC_007798.1 identified by similarity to SP:P17792; putative type IV secretion system protein VirB2 685817 3932199 NSE_0768 Neorickettsia sennetsu str. Miyayama putative type IV secretion system protein VirB2 YP_506643.1 685452 R 222891 CDS YP_506644.1 88608289 3932023 complement(685895..686071) 1 NC_007798.1 hypothetical protein 686071 3932023 NSE_0769 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506644.1 685895 R 222891 CDS YP_506645.1 88608046 3932140 complement(686029..686376) 1 NC_007798.1 identified by similarity to SP:P17792; type IV secretion system protein VirB2 686376 virB2 3932140 virB2 Neorickettsia sennetsu str. Miyayama type IV secretion system protein VirB2 YP_506645.1 686029 R 222891 CDS YP_506646.1 88608229 3932063 complement(686562..688352) 1 NC_007798.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 688352 lepA 3932063 lepA Neorickettsia sennetsu str. Miyayama GTP-binding protein LepA YP_506646.1 686562 R 222891 CDS YP_506647.1 88608729 3932162 688308..688430 1 NC_007798.1 hypothetical protein 688430 3932162 NSE_0772 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506647.1 688308 D 222891 CDS YP_506648.1 88608230 3932064 complement(688535..690052) 1 NC_007798.1 class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; lysyl-tRNA synthetase 690052 lysK 3932064 lysK Neorickettsia sennetsu str. Miyayama lysyl-tRNA synthetase YP_506648.1 688535 R 222891 CDS YP_506649.1 88608501 3931347 complement(690000..690116) 1 NC_007798.1 hypothetical protein 690116 3931347 NSE_0774 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506649.1 690000 R 222891 CDS YP_506650.1 88608863 3931601 complement(690580..690738) 1 NC_007798.1 hypothetical protein 690738 3931601 NSE_0775 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506650.1 690580 R 222891 CDS YP_506651.1 88608718 3931552 complement(690830..691009) 1 NC_007798.1 hypothetical protein 691009 3931552 NSE_0776 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506651.1 690830 R 222891 CDS YP_506652.1 88608145 3931445 complement(691163..691900) 1 NC_007798.1 identified by similarity to SP:P12282; match to protein family HMM PF00899; match to protein family HMM PF05237; molybdopterin biosynthesis protein MoeB 691900 moeB 3931445 moeB Neorickettsia sennetsu str. Miyayama molybdopterin biosynthesis protein MoeB YP_506652.1 691163 R 222891 CDS YP_506653.1 88607978 3931422 complement(691927..692043) 1 NC_007798.1 hypothetical protein 692043 3931422 NSE_0778 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506653.1 691927 R 222891 CDS YP_506654.1 88608472 3932215 692117..693118 1 NC_007798.1 identified by match to protein family HMM PF00070; match to protein family HMM PF03486; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase family protein 693118 3932215 NSE_0779 Neorickettsia sennetsu str. Miyayama pyridine nucleotide-disulfide oxidoreductase family protein YP_506654.1 692117 D 222891 CDS YP_506655.1 88608243 3931465 complement(693181..693273) 1 NC_007798.1 hypothetical protein 693273 3931465 NSE_0780 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506655.1 693181 R 222891 CDS YP_506656.1 88608104 3931975 complement(693305..694546) 1 NC_007798.1 identified by similarity to SP:P30053; match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442; histidyl-tRNA synthetase 694546 hisS 3931975 hisS Neorickettsia sennetsu str. Miyayama histidyl-tRNA synthetase YP_506656.1 693305 R 222891 CDS YP_506657.1 88608831 3931699 complement(694527..694814) 1 NC_007798.1 identified by match to protein family HMM PF01722; BolA family protein 694814 3931699 NSE_0782 Neorickettsia sennetsu str. Miyayama BolA family protein YP_506657.1 694527 R 222891 CDS YP_506658.1 88608756 3931643 complement(694897..696144) 1 NC_007798.1 identified by match to protein family HMM PF00083; major facilitator family transporter 696144 3931643 NSE_0783 Neorickettsia sennetsu str. Miyayama major facilitator family transporter YP_506658.1 694897 R 222891 CDS YP_506659.1 88608750 3931637 696464..697222 1 NC_007798.1 identified by similarity to GB:AAM22228.1; match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 697222 lepB 3931637 lepB Neorickettsia sennetsu str. Miyayama signal peptidase I YP_506659.1 696464 D 222891 CDS YP_506660.1 88608641 3931918 complement(697345..698634) 1 NC_007798.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; MiaB family tRNA modification protein 698634 3931918 NSE_0785 Neorickettsia sennetsu str. Miyayama MiaB family tRNA modification protein YP_506660.1 697345 R 222891 CDS YP_506661.1 88608188 3931755 698658..698771 1 NC_007798.1 hypothetical protein 698771 3931755 NSE_0786 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506661.1 698658 D 222891 CDS YP_506662.1 88608568 3932278 698840..700207 1 NC_007798.1 hypothetical protein 700207 3932278 NSE_0787 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506662.1 698840 D 222891 CDS YP_506663.1 88608867 3931605 700222..700758 1 NC_007798.1 hypothetical protein 700758 3931605 NSE_0788 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506663.1 700222 D 222891 CDS YP_506664.1 88608658 3932188 700921..701742 1 NC_007798.1 hypothetical protein 701742 3932188 NSE_0789 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506664.1 700921 D 222891 CDS YP_506665.1 88608466 3931832 complement(701760..702737) 1 NC_007798.1 identified by similarity to SP:P54225; match to protein family HMM PF00762; match to protein family HMM TIGR00109; ferrochelatase 702737 hemH 3931832 hemH Neorickettsia sennetsu str. Miyayama ferrochelatase YP_506665.1 701760 R 222891 CDS YP_506666.1 88608335 3931837 complement(702873..703850) 1 NC_007798.1 hypothetical protein 703850 3931837 NSE_0791 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506666.1 702873 R 222891 CDS YP_506667.1 88608241 3931463 complement(703922..704185) 1 NC_007798.1 identified by similarity to SP:P02378; match to protein family HMM PF01649; match to protein family HMM TIGR00029; 30S ribosomal protein S20 704185 rpsT 3931463 rpsT Neorickettsia sennetsu str. Miyayama 30S ribosomal protein S20 YP_506667.1 703922 R 222891 CDS YP_506668.1 88608051 3932145 704640..705326 1 NC_007798.1 identified by similarity to SP:Q59654; match to protein family HMM PF00215; match to protein family HMM TIGR01740; orotidine 5'-phosphate decarboxylase 705326 pyrF 3932145 pyrF Neorickettsia sennetsu str. Miyayama orotidine 5'-phosphate decarboxylase YP_506668.1 704640 D 222891 CDS YP_506669.1 88608133 3932125 complement(705371..706045) 1 NC_007798.1 identified by match to protein family HMM PF03741; TerC family membrane protein 706045 3932125 NSE_0794 Neorickettsia sennetsu str. Miyayama TerC family membrane protein YP_506669.1 705371 R 222891 CDS YP_506670.1 88608588 3931911 complement(706239..706427) 1 NC_007798.1 hypothetical protein 706427 3931911 NSE_0795 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506670.1 706239 R 222891 CDS YP_506671.1 88608690 3931790 706523..708079 1 NC_007798.1 identified by similarity to SP:P05166; match to protein family HMM PF01039; propionyl-CoA carboxylase subunit beta 708079 pccB 3931790 pccB Neorickettsia sennetsu str. Miyayama propionyl-CoA carboxylase subunit beta YP_506671.1 706523 D 222891 CDS YP_506672.1 88608418 3932200 708193..708750 1 NC_007798.1 hypothetical protein 708750 3932200 NSE_0797 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506672.1 708193 D 222891 CDS YP_506673.1 88608600 3932252 708928..710238 1 NC_007798.1 identified by match to protein family HMM PF02321; outer membrane efflux protein 710238 3932252 NSE_0798 Neorickettsia sennetsu str. Miyayama outer membrane efflux protein YP_506673.1 708928 D 222891 CDS YP_506674.1 88608788 3931584 complement(710334..711578) 1 NC_007798.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 711578 ispG 3931584 ispG Neorickettsia sennetsu str. Miyayama 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_506674.1 710334 R 222891 CDS YP_506675.1 88608685 3931785 complement(711630..712349) 1 NC_007798.1 inositol monophosphatase family protein 712349 3931785 NSE_0800 Neorickettsia sennetsu str. Miyayama inositol monophosphatase family protein YP_506675.1 711630 R 222891 CDS YP_506676.1 88608071 3931619 complement(712276..712446) 1 NC_007798.1 hypothetical protein 712446 3931619 NSE_0801 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506676.1 712276 R 222891 CDS YP_506677.1 88608016 3931953 complement(712430..713434) 1 NC_007798.1 identified by similarity to SP:Q9R9N5; match to protein family HMM PF00676; pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase subunit alpha 713434 pdhA 3931953 pdhA Neorickettsia sennetsu str. Miyayama pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase subunit alpha YP_506677.1 712430 R 222891 CDS YP_506678.1 88608094 3931906 complement(716445..716678) 1 NC_007798.1 hypothetical protein 716678 3931906 NSE_0805 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506678.1 716445 R 222891 CDS YP_506679.1 88608698 3931798 716757..717599 1 NC_007798.1 identified by match to protein family HMM PF01040; 4-hydroxybenzoate octaprenyltransferase 717599 ubiA 3931798 ubiA Neorickettsia sennetsu str. Miyayama 4-hydroxybenzoate octaprenyltransferase YP_506679.1 716757 D 222891 CDS YP_506680.1 88608799 3931853 717596..718054 1 NC_007798.1 identified by match to protein family HMM PF01613; flavin reductase family protein 718054 3931853 NSE_0807 Neorickettsia sennetsu str. Miyayama flavin reductase family protein YP_506680.1 717596 D 222891 CDS YP_506681.1 88608535 3932100 718156..718923 1 NC_007798.1 identified by match to protein family HMM PF00005; putative phosphate ABC transporter ATP-binding protein 718923 3932100 NSE_0808 Neorickettsia sennetsu str. Miyayama putative phosphate ABC transporter ATP-binding protein YP_506681.1 718156 D 222891 CDS YP_506682.1 88608315 3931708 complement(719425..719535) 1 NC_007798.1 hypothetical protein 719535 3931708 NSE_0810 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506682.1 719425 R 222891 CDS YP_506683.1 88608497 3931343 complement(719542..719985) 1 NC_007798.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 719985 smpB 3931343 smpB Neorickettsia sennetsu str. Miyayama SsrA-binding protein YP_506683.1 719542 R 222891 CDS YP_506684.1 88607991 3931928 720232..723072 1 NC_007798.1 identified by similarity to SP:P12042; match to protein family HMM PF00586; match to protein family HMM PF02769; putative phosphoribosylformylglycinamidine synthase II 723072 3931928 NSE_0812 Neorickettsia sennetsu str. Miyayama putative phosphoribosylformylglycinamidine synthase II YP_506684.1 720232 D 222891 CDS YP_506685.1 88608184 3931751 complement(723307..723540) 1 NC_007798.1 hypothetical protein 723540 3931751 NSE_0813 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506685.1 723307 R 222891 CDS YP_506686.1 88608260 3931710 complement(723632..724906) 1 NC_007798.1 putative permease 724906 3931710 NSE_0814 Neorickettsia sennetsu str. Miyayama putative permease YP_506686.1 723632 R 222891 CDS YP_506687.1 88608321 3932229 complement(725044..727002) 1 NC_007798.1 identified by similarity to GB:AAL66189.1; match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786; propionyl-CoA carboxylase subunit alpha 727002 pccA 3932229 pccA Neorickettsia sennetsu str. Miyayama propionyl-CoA carboxylase subunit alpha YP_506687.1 725044 R 222891 CDS YP_506688.1 88608481 3931800 complement(726974..727891) 1 NC_007798.1 identified by similarity to SP:P08330; match to protein family HMM PF00156; match to protein family HMM TIGR01251; ribose-phosphate pyrophosphokinase 727891 prs 3931800 prs Neorickettsia sennetsu str. Miyayama ribose-phosphate pyrophosphokinase YP_506688.1 726974 R 222891 CDS YP_506689.1 88608783 3931579 complement(728057..728599) 1 NC_007798.1 identified by match to protein family HMM PF01106; NifU-like domain-containing protein 728599 3931579 NSE_0817 Neorickettsia sennetsu str. Miyayama NifU-like domain-containing protein YP_506689.1 728057 R 222891 CDS YP_506690.1 88607999 3931936 728680..729066 1 NC_007798.1 identified by match to protein family HMM PF00226; DnaJ domain-containing protein 729066 3931936 NSE_0818 Neorickettsia sennetsu str. Miyayama DnaJ domain-containing protein YP_506690.1 728680 D 222891 CDS YP_506691.1 88608251 3931473 729085..729207 1 NC_007798.1 hypothetical protein 729207 3931473 NSE_0819 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506691.1 729085 D 222891 CDS YP_506692.1 88608014 3931951 729277..729759 1 NC_007798.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 729759 3931951 NSE_0820 Neorickettsia sennetsu str. Miyayama NADH dehydrogenase subunit I YP_506692.1 729277 D 222891 CDS YP_506693.1 88608844 3931653 729743..730639 1 NC_007798.1 identified by similarity to SP:P54382; match to protein family HMM PF00763; match to protein family HMM PF02882; FolD bifunctional protein 730639 folD 3931653 folD Neorickettsia sennetsu str. Miyayama FolD bifunctional protein YP_506693.1 729743 D 222891 CDS YP_506694.1 88608138 3931968 730933..731625 1 NC_007798.1 hypothetical protein 731625 3931968 NSE_0823 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506694.1 730933 D 222891 CDS YP_506695.1 88608262 3931712 complement(731744..733027) 1 NC_007798.1 identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein 733027 3931712 NSE_0824 Neorickettsia sennetsu str. Miyayama Ser/Thr protein phosphatase family protein YP_506695.1 731744 R 222891 CDS YP_506696.1 88608338 3931840 733470..734690 1 NC_007798.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase 734690 hemA 3931840 hemA Neorickettsia sennetsu str. Miyayama 5-aminolevulinate synthase YP_506696.1 733470 D 222891 CDS YP_506697.1 88608841 3931650 complement(734719..734913) 1 NC_007798.1 identified by match to protein family HMM TIGR00030; 30S ribosomal protein S21 734913 rpsU 3931650 rpsU Neorickettsia sennetsu str. Miyayama 30S ribosomal protein S21 YP_506697.1 734719 R 222891 CDS YP_506698.1 88608744 3931631 complement(734990..735397) 1 NC_007798.1 identified by similarity to SP:P33928; putative cytochrome c-type biogenesis protein CcmE 735397 3931631 NSE_0828 Neorickettsia sennetsu str. Miyayama putative cytochrome c-type biogenesis protein CcmE YP_506698.1 734990 R 222891 CDS YP_506699.1 88608757 3931644 complement(735399..737027) 1 NC_007798.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; metallo-beta-lactamase family protein 737027 3931644 NSE_0829 Neorickettsia sennetsu str. Miyayama metallo-beta-lactamase family protein YP_506699.1 735399 R 222891 CDS YP_506700.1 88608832 3931700 737127..737333 1 NC_007798.1 hypothetical protein 737333 3931700 NSE_0830 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506700.1 737127 D 222891 CDS YP_506701.1 88608531 3932096 complement(737245..737364) 1 NC_007798.1 hypothetical protein 737364 3932096 NSE_0831 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506701.1 737245 R 222891 CDS YP_506702.1 88608596 3932248 737392..738807 1 NC_007798.1 identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01574; tRNA-i(6)A37 modification enzyme MiaB 738807 miaB 3932248 miaB Neorickettsia sennetsu str. Miyayama tRNA-i(6)A37 modification enzyme MiaB YP_506702.1 737392 D 222891 CDS YP_506703.1 88608246 3931468 complement(739344..739529) 1 NC_007798.1 hypothetical protein 739529 3931468 NSE_0834 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506703.1 739344 R 222891 CDS YP_506704.1 88608474 3932217 739597..739737 1 NC_007798.1 hypothetical protein 739737 3932217 NSE_0835 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506704.1 739597 D 222891 CDS YP_506705.1 88608675 3931568 complement(741300..741593) 1 NC_007798.1 hypothetical protein 741593 3931568 NSE_0837 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506705.1 741300 R 222891 CDS YP_506706.1 88608165 3931504 complement(741687..741923) 1 NC_007798.1 hypothetical protein 741923 3931504 NSE_0838 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506706.1 741687 R 222891 CDS YP_506707.1 88608809 3931863 complement(742020..742457) 1 NC_007798.1 identified by match to protein family HMM PF00380; 30S ribosomal protein S9 742457 rpsI 3931863 rpsI Neorickettsia sennetsu str. Miyayama 30S ribosomal protein S9 YP_506707.1 742020 R 222891 CDS YP_506708.1 88608735 3932168 complement(742460..742918) 1 NC_007798.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 742918 rplM 3932168 rplM Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L13 YP_506708.1 742460 R 222891 CDS YP_506709.1 88608526 3932091 complement(742951..743622) 1 NC_007798.1 identified by match to protein family HMM PF02674; CvpA family protein 743622 3932091 NSE_0841 Neorickettsia sennetsu str. Miyayama CvpA family protein YP_506709.1 742951 R 222891 CDS YP_506710.1 88608351 3931516 complement(743623..746190) 1 NC_007798.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR02123; TRAP transporter, 4TM/12TM fusion protein 746190 3931516 NSE_0842 Neorickettsia sennetsu str. Miyayama TRAP transporter, 4TM/12TM fusion protein YP_506710.1 743623 R 222891 CDS YP_506711.1 88608810 3931864 complement(746226..746843) 1 NC_007798.1 identified by similarity to SP:P09157; match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase, Fe 746843 sodB 3931864 sodB Neorickettsia sennetsu str. Miyayama superoxide dismutase, Fe YP_506711.1 746226 R 222891 CDS YP_506712.1 88608543 3932108 747025..747615 1 NC_007798.1 identified by match to protein family HMM PF00814; glycoprotease family protein 747615 3932108 NSE_0844 Neorickettsia sennetsu str. Miyayama glycoprotease family protein YP_506712.1 747025 D 222891 CDS YP_506713.1 88608633 3931437 747634..748776 1 NC_007798.1 identified by match to protein family HMM PF05525; branched-chain amino acid transporter 748776 3931437 NSE_0845 Neorickettsia sennetsu str. Miyayama branched-chain amino acid transporter YP_506713.1 747634 D 222891 CDS YP_506714.1 88608479 3932222 748965..750164 1 NC_007798.1 identified by match to protein family HMM PF07690; hypothetical protein 750164 3932222 NSE_0846 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506714.1 748965 D 222891 CDS YP_506715.1 88608064 3931811 complement(750174..751187) 1 NC_007798.1 identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein 751187 3931811 NSE_0847 Neorickettsia sennetsu str. Miyayama mechanosensitive ion channel family protein YP_506715.1 750174 R 222891 CDS YP_506716.1 88608359 3931524 751546..752280 1 NC_007798.1 identified by match to protein family HMM PF00596; hypothetical protein 752280 3931524 NSE_0849 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506716.1 751546 D 222891 CDS YP_506717.1 88608008 3931945 752265..753434 1 NC_007798.1 DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine transaminase protein 753434 argD 3931945 argD Neorickettsia sennetsu str. Miyayama acetylornithine transaminase protein YP_506717.1 752265 D 222891 CDS YP_506718.1 88608333 3931835 complement(753497..754156) 1 NC_007798.1 identified by match to protein family HMM PF00160; cyclophilin-type peptidyl-prolyl cis-trans isomerase 754156 3931835 NSE_0851 Neorickettsia sennetsu str. Miyayama cyclophilin-type peptidyl-prolyl cis-trans isomerase YP_506718.1 753497 R 222891 CDS YP_506719.1 88608255 3931615 complement(754295..755017) 1 NC_007798.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 755017 purC 3931615 purC Neorickettsia sennetsu str. Miyayama phosphoribosylaminoimidazole-succinocarboxamide synthase YP_506719.1 754295 R 222891 CDS YP_506720.1 88608601 3932253 755331..755933 1 NC_007798.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 755933 ribE-2 3932253 ribE-2 Neorickettsia sennetsu str. Miyayama riboflavin synthase subunit alpha YP_506720.1 755331 D 222891 CDS YP_506721.1 88608475 3932218 756036..756836 1 NC_007798.1 identified by similarity to SP:P37149; match to protein family HMM PF01790; match to protein family HMM TIGR00544; prolipoprotein diacylglyceryl transferase 756836 lgt 3932218 lgt Neorickettsia sennetsu str. Miyayama prolipoprotein diacylglyceryl transferase YP_506721.1 756036 D 222891 CDS YP_506722.1 88607965 3931409 complement(756879..757856) 1 NC_007798.1 identified by match to protein family HMM PF02628; putative cytochrome oxidase assembly protein 757856 3931409 NSE_0855 Neorickettsia sennetsu str. Miyayama putative cytochrome oxidase assembly protein YP_506722.1 756879 R 222891 CDS YP_506723.1 88608401 3932305 758080..758214 1 NC_007798.1 identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030; 50S ribosomal protein L34 758214 rpmH 3932305 rpmH Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L34 YP_506723.1 758080 D 222891 CDS YP_506724.1 88608075 3931623 758205..758546 1 NC_007798.1 identified by similarity to SP:P25814; match to protein family HMM TIGR00188; ribonuclease P protein component 758546 rnpA 3931623 rnpA Neorickettsia sennetsu str. Miyayama ribonuclease P protein component YP_506724.1 758205 D 222891 CDS YP_506725.1 88608620 3932005 758552..758860 1 NC_007798.1 identified by similarity to GB:AAO78334.1; match to protein family HMM PF01809; hypothetical protein 758860 3932005 NSE_0858 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506725.1 758552 D 222891 CDS YP_506726.1 88608766 3931769 complement(758873..762322) 1 NC_007798.1 identified by similarity to GB:AAM00403.1; match to protein family HMM PF04610; VirB6 family type IV secretion system protein 762322 3931769 NSE_0859 Neorickettsia sennetsu str. Miyayama VirB6 family type IV secretion system protein YP_506726.1 758873 R 222891 CDS YP_506727.1 88608816 3931870 complement(762252..765761) 1 NC_007798.1 identified by match to protein family HMM PF04610; VirB6 family type IV secretion system protein 765761 3931870 NSE_0860 Neorickettsia sennetsu str. Miyayama VirB6 family type IV secretion system protein YP_506727.1 762252 R 222891 CDS YP_506728.1 88607975 3931419 complement(765772..768291) 1 NC_007798.1 identified by match to protein family HMM PF04610; VirB6 family type IV secretion system protein 768291 3931419 NSE_0861 Neorickettsia sennetsu str. Miyayama VirB6 family type IV secretion system protein YP_506728.1 765772 R 222891 CDS YP_506729.1 88607976 3931420 complement(768308..770929) 1 NC_007798.1 identified by similarity to GB:AAM00403.1; match to protein family HMM PF04610; type IV secretion system protein VirB6 770929 virB6 3931420 virB6 Neorickettsia sennetsu str. Miyayama type IV secretion system protein VirB6 YP_506729.1 768308 R 222891 CDS YP_506730.1 88608419 3932201 complement(770926..773337) 1 NC_007798.1 identified by similarity to GB:AAM00400.1; match to protein family HMM PF03135; match to protein family HMM TIGR00929; type IV secretion system ATPase VirB4 773337 virB4-2 3932201 virB4-2 Neorickettsia sennetsu str. Miyayama type IV secretion system ATPase VirB4 YP_506730.1 770926 R 222891 CDS YP_506731.1 88608247 3931469 complement(773340..773636) 1 NC_007798.1 identified by similarity to GB:AAM00402.1; match to protein family HMM PF05101; type IV secretion system protein VirB3 773636 virB3 3931469 virB3 Neorickettsia sennetsu str. Miyayama type IV secretion system protein VirB3 YP_506731.1 773340 R 222891 CDS YP_506732.1 88608377 3931352 complement(773969..775732) 1 NC_007798.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; putative ABC transporter ATP-binding protein/permease 775732 3931352 NSE_0865 Neorickettsia sennetsu str. Miyayama putative ABC transporter ATP-binding protein/permease YP_506732.1 773969 R 222891 CDS YP_506733.1 88608035 3931491 complement(775861..776952) 1 NC_007798.1 identified by match to protein family HMM PF01734; patatin-like phospholipase family protein 776952 3931491 NSE_0866 Neorickettsia sennetsu str. Miyayama patatin-like phospholipase family protein YP_506733.1 775861 R 222891 CDS YP_506734.1 88608848 3931657 complement(776970..777077) 1 NC_007798.1 hypothetical protein 777077 3931657 NSE_0867 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506734.1 776970 R 222891 CDS YP_506735.1 88608499 3931345 complement(777087..777188) 1 NC_007798.1 hypothetical protein 777188 3931345 NSE_0868 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506735.1 777087 R 222891 CDS YP_506736.1 88608171 3931510 777334..778200 1 NC_007798.1 hypothetical protein 778200 3931510 NSE_0869 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506736.1 777334 D 222891 CDS YP_506737.1 88608402 3932306 778226..778372 1 NC_007798.1 hypothetical protein 778372 3932306 NSE_0870 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506737.1 778226 D 222891 CDS YP_506738.1 88608066 3931813 778305..779162 1 NC_007798.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 779162 3931813 NSE_0871 Neorickettsia sennetsu str. Miyayama alpha/beta fold family hydrolase YP_506738.1 778305 D 222891 CDS YP_506739.1 88608271 3931721 779288..780073 1 NC_007798.1 hypothetical protein 780073 3931721 NSE_0872 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506739.1 779288 D 222891 CDS YP_506740.1 88608223 3932057 780397..781311 1 NC_007798.1 hypothetical protein 781311 3932057 NSE_0873 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506740.1 780397 D 222891 CDS YP_506741.1 88608150 3931450 781561..781671 1 NC_007798.1 hypothetical protein 781671 3931450 NSE_0874 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506741.1 781561 D 222891 CDS YP_506742.1 88608396 3932300 781677..782417 1 NC_007798.1 identified by similarity to GB:AAC46296.1; match to protein family HMM PF01617; putative outer surface protein 782417 3932300 NSE_0875 Neorickettsia sennetsu str. Miyayama putative outer surface protein YP_506742.1 781677 D 222891 CDS YP_506743.1 88608627 3931431 782478..782801 1 NC_007798.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 782801 secG 3931431 secG Neorickettsia sennetsu str. Miyayama preprotein translocase subunit SecG YP_506743.1 782478 D 222891 CDS YP_506744.1 88608707 3931541 782794..784440 1 NC_007798.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 784440 pyrG 3931541 pyrG Neorickettsia sennetsu str. Miyayama CTP synthetase YP_506744.1 782794 D 222891 CDS YP_506745.1 88608121 3932113 784737..786728 1 NC_007798.1 hypothetical protein 786728 3932113 NSE_0879 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506745.1 784737 D 222891 CDS YP_506746.1 88608227 3932061 complement(786737..787162) 1 NC_007798.1 identified by similarity to GB:AAS13983.1; putative N utilization substance protein B 787162 3932061 NSE_0880 Neorickettsia sennetsu str. Miyayama putative N utilization substance protein B YP_506746.1 786737 R 222891 CDS YP_506747.1 88608209 3931679 complement(787152..787781) 1 NC_007798.1 identified by match to protein family HMM PF02545; maf protein 787781 maf 3931679 maf Neorickettsia sennetsu str. Miyayama maf protein YP_506747.1 787152 R 222891 CDS YP_506748.1 88608323 3932231 complement(787815..788096) 1 NC_007798.1 identified by similarity to SP:P02998; match to protein family HMM TIGR00008; translation initiation factor IF-1 788096 infA 3932231 infA Neorickettsia sennetsu str. Miyayama translation initiation factor IF-1 YP_506748.1 787815 R 222891 CDS YP_506749.1 88608512 3931392 complement(788148..788261) 1 NC_007798.1 hypothetical protein 788261 3931392 NSE_0883 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506749.1 788148 R 222891 CDS YP_506750.1 88608840 3931649 788477..789007 1 NC_007798.1 identified by similarity to GB:CAD84691.1; hypothetical protein 789007 3931649 NSE_0884 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506750.1 788477 D 222891 CDS YP_506751.1 88608068 3931815 789029..790765 1 NC_007798.1 identified by similarity to SP:P03819; match to protein family HMM PF00999; match to protein family HMM PF02254; match to protein family HMM TIGR00932; glutathione-regulated potassium-efflux system protein 790765 3931815 NSE_0885 Neorickettsia sennetsu str. Miyayama glutathione-regulated potassium-efflux system protein YP_506751.1 789029 D 222891 CDS YP_506752.1 88608032 3931488 790677..790865 1 NC_007798.1 hypothetical protein 790865 3931488 NSE_0886 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506752.1 790677 D 222891 CDS YP_506753.1 88608428 3931366 complement(790828..792387) 1 NC_007798.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 792387 guaA 3931366 guaA Neorickettsia sennetsu str. Miyayama GMP synthase YP_506753.1 790828 R 222891 CDS YP_506754.1 88608350 3931515 complement(792519..793259) 1 NC_007798.1 identified by similarity to SP:P21590; match to protein family HMM PF01656; ATP-binding Mrp/Nbp35 family protein 793259 3931515 NSE_0888 Neorickettsia sennetsu str. Miyayama ATP-binding Mrp/Nbp35 family protein YP_506754.1 792519 R 222891 CDS YP_506755.1 88608624 3931428 793656..794282 1 NC_007798.1 identified by similarity to SP:P07176; putative peptidoglycan-associated lipoprotein 794282 3931428 NSE_0889 Neorickettsia sennetsu str. Miyayama putative peptidoglycan-associated lipoprotein YP_506755.1 793656 D 222891 CDS YP_506756.1 88607963 3931407 794298..795143 1 NC_007798.1 identified by similarity to PIR:H97738; hypothetical protein 795143 3931407 NSE_0890 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506756.1 794298 D 222891 CDS YP_506757.1 88608772 3931775 795212..796684 1 NC_007798.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 796684 gpmI 3931775 gpmI Neorickettsia sennetsu str. Miyayama phosphoglyceromutase YP_506757.1 795212 D 222891 CDS YP_506758.1 88608254 3931614 complement(796699..797439) 1 NC_007798.1 identified by similarity to GB:BAB47692.1; hypothetical protein 797439 3931614 NSE_0892 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506758.1 796699 R 222891 CDS YP_506759.1 88608152 3931452 797690..799201 1 NC_007798.1 identified by similarity to SP:O05593; match to protein family HMM PF00133; match to protein family HMM TIGR00398; methionyl-tRNA synthetase 799201 metG 3931452 metG Neorickettsia sennetsu str. Miyayama methionyl-tRNA synthetase YP_506759.1 797690 D 222891 CDS YP_506760.1 88608595 3932247 complement(799237..799545) 1 NC_007798.1 identified by similarity to SP:P00274; match to protein family HMM PF00085; thioredoxin 1 799545 trxA 3932247 trxA Neorickettsia sennetsu str. Miyayama thioredoxin 1 YP_506760.1 799237 R 222891 CDS YP_506761.1 88608669 3931562 complement(799555..799917) 1 NC_007798.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 799917 rplS 3931562 rplS Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L19 YP_506761.1 799555 R 222891 CDS YP_506762.1 88608142 3931442 complement(799941..800618) 1 NC_007798.1 identified by match to protein family HMM PF01746; match to protein family HMM TIGR00088; tRNA (guanine-N1)-methyltransferase 800618 trmD 3931442 trmD Neorickettsia sennetsu str. Miyayama tRNA (guanine-N1)-methyltransferase YP_506762.1 799941 R 222891 CDS YP_506763.1 88608812 3931866 complement(800634..800882) 1 NC_007798.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 800882 rpmA 3931866 rpmA Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L27 YP_506763.1 800634 R 222891 CDS YP_506764.1 88608843 3931652 complement(800931..801230) 1 NC_007798.1 identified by similarity to SP:P02422; match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 801230 rplU 3931652 rplU Neorickettsia sennetsu str. Miyayama 50S ribosomal protein L21 YP_506764.1 800931 R 222891 CDS YP_506765.1 88608709 3931543 complement(801342..801932) 1 NC_007798.1 identified by similarity to SP:P24277; match to protein family HMM PF01751; match to protein family HMM TIGR00615; recombination protein RecR 801932 recR 3931543 recR Neorickettsia sennetsu str. Miyayama recombination protein RecR YP_506765.1 801342 R 222891 CDS YP_506766.1 88608124 3932116 801997..802689 1 NC_007798.1 identified by similarity to PIR:H97456; hypothetical protein 802689 3932116 NSE_0900 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506766.1 801997 D 222891 CDS YP_506767.1 88608383 3931358 802961..803734 1 NC_007798.1 identified by similarity to GB:AAM22615.1; match to protein family HMM PF01323; disulfide oxidoreductase 803734 3931358 NSE_0901 Neorickettsia sennetsu str. Miyayama disulfide oxidoreductase YP_506767.1 802961 D 222891 CDS YP_506768.1 88608513 3931393 804130..804462 1 NC_007798.1 hypothetical protein 804462 3931393 NSE_0902 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506768.1 804130 D 222891 CDS YP_506769.1 88608207 3931677 complement(804282..804473) 1 NC_007798.1 hypothetical protein 804473 3931677 NSE_0903 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506769.1 804282 R 222891 CDS YP_506770.1 88608722 3932155 804704..805501 1 NC_007798.1 identified by similarity to GB:AAC31427.1; strain-specific surface antigen 805501 3932155 NSE_0904 Neorickettsia sennetsu str. Miyayama strain-specific surface antigen YP_506770.1 804704 D 222891 CDS YP_506771.1 88608221 3932055 complement(806019..806150) 1 NC_007798.1 hypothetical protein 806150 3932055 NSE_0906 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506771.1 806019 R 222891 CDS YP_506772.1 88608172 3931511 complement(806356..806451) 1 NC_007798.1 hypothetical protein 806451 3931511 NSE_0907 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506772.1 806356 R 222891 CDS YP_506773.1 88608049 3932143 806668..807666 1 NC_007798.1 identified by similarity to GB:AAC31427.1; strain-specific surface antigen 807666 3932143 NSE_0908 Neorickettsia sennetsu str. Miyayama strain-specific surface antigen YP_506773.1 806668 D 222891 CDS YP_506774.1 88608454 3931820 complement(807635..807793) 1 NC_007798.1 hypothetical protein 807793 3931820 NSE_0909 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506774.1 807635 R 222891 CDS YP_506775.1 88608807 3931861 808080..809132 1 NC_007798.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 809132 3931861 NSE_0910 Neorickettsia sennetsu str. Miyayama GTP-dependent nucleic acid-binding protein EngD YP_506775.1 808080 D 222891 CDS YP_506776.1 88608017 3931954 complement(809434..809580) 1 NC_007798.1 hypothetical protein 809580 3931954 NSE_0912 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506776.1 809434 R 222891 CDS YP_506777.1 88608659 3932189 complement(809558..810904) 1 NC_007798.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 810904 3932189 NSE_0913 Neorickettsia sennetsu str. Miyayama M16 family peptidase YP_506777.1 809558 R 222891 CDS YP_506778.1 88608715 3931549 complement(810907..812220) 1 NC_007798.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 812220 3931549 NSE_0914 Neorickettsia sennetsu str. Miyayama M16 family peptidase YP_506778.1 810907 R 222891 CDS YP_506779.1 88608487 3932129 complement(812233..812787) 1 NC_007798.1 identified by match to protein family HMM PF01252; match to protein family HMM TIGR00077; signal peptidase II 812787 lspA 3932129 lspA Neorickettsia sennetsu str. Miyayama signal peptidase II YP_506779.1 812233 R 222891 CDS YP_506780.1 88608482 3931801 complement(812789..814144) 1 NC_007798.1 identified by similarity to SP:P42663; putative carboxypeptidase 814144 3931801 NSE_0916 Neorickettsia sennetsu str. Miyayama putative carboxypeptidase YP_506780.1 812789 R 222891 CDS YP_506781.1 88608105 3931976 814327..815094 1 NC_007798.1 hypothetical protein 815094 3931976 NSE_0917 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506781.1 814327 D 222891 CDS YP_506782.1 88608789 3931585 complement(815133..815801) 1 NC_007798.1 identified by similarity to SP:P05797; match to protein family HMM PF00035; match to protein family HMM PF00636; match to protein family HMM TIGR02191; ribonuclease III 815801 rnc 3931585 rnc Neorickettsia sennetsu str. Miyayama ribonuclease III YP_506782.1 815133 R 222891 CDS YP_506783.1 88608845 3931654 complement(815792..816124) 1 NC_007798.1 identified by match to protein family HMM PF02410; iojap-like protein 816124 3931654 NSE_0919 Neorickettsia sennetsu str. Miyayama iojap-like protein YP_506783.1 815792 R 222891 CDS YP_506784.1 88608837 3931646 complement(816126..816272) 1 NC_007798.1 hypothetical protein 816272 3931646 NSE_0920 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506784.1 816126 R 222891 CDS YP_506785.1 88608489 3932131 complement(816499..817389) 1 NC_007798.1 identified by similarity to SP:P18595; match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 817389 mraW 3932131 mraW Neorickettsia sennetsu str. Miyayama S-adenosyl-methyltransferase MraW YP_506785.1 816499 R 222891 CDS YP_506786.1 88608619 3932004 complement(817520..818173) 1 NC_007798.1 identified by similarity to SP:P32049; match to protein family HMM PF02390; putative tRNA (guanine-N(7)-)-methyltransferase 818173 3932004 NSE_0922 Neorickettsia sennetsu str. Miyayama putative tRNA (guanine-N(7)-)-methyltransferase YP_506786.1 817520 R 222891 CDS YP_506787.1 88608266 3931716 complement(818268..818927) 1 NC_007798.1 identified by similarity to SP:Q50985; putative competence protein ComL 818927 3931716 NSE_0923 Neorickettsia sennetsu str. Miyayama putative competence protein ComL YP_506787.1 818268 R 222891 CDS YP_506788.1 88608190 3931757 818998..820263 1 NC_007798.1 identified by similarity to SP:P15640; match to protein family HMM PF01071; match to protein family HMM PF02842; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877; phosphoribosylamine--glycine ligase 820263 purD 3931757 purD Neorickettsia sennetsu str. Miyayama phosphoribosylamine--glycine ligase YP_506788.1 818998 D 222891 CDS YP_506789.1 88608570 3932280 complement(820417..821106) 1 NC_007798.1 hypothetical protein 821106 3932280 NSE_0925 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506789.1 820417 R 222891 CDS YP_506790.1 88608471 3932214 complement(821205..821948) 1 NC_007798.1 hypothetical protein 821948 3932214 NSE_0926 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506790.1 821205 R 222891 CDS YP_506791.1 88608731 3932164 complement(821998..822132) 1 NC_007798.1 identified by similarity to GB:AAS14072.1; hypothetical protein 822132 3932164 NSE_0927 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506791.1 821998 R 222891 CDS YP_506792.1 88608678 3931571 complement(822163..822360) 1 NC_007798.1 hypothetical protein 822360 3931571 NSE_0928 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506792.1 822163 R 222891 CDS YP_506793.1 88608025 3931480 822373..823299 1 NC_007798.1 identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674; dihydrodipicolinate synthase 823299 dapA 3931480 dapA Neorickettsia sennetsu str. Miyayama dihydrodipicolinate synthase YP_506793.1 822373 D 222891 CDS YP_506794.1 88608182 3931749 complement(823434..823553) 1 NC_007798.1 hypothetical protein 823553 3931749 NSE_0930 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506794.1 823434 R 222891 CDS YP_506795.1 88608517 3931397 complement(823618..823728) 1 NC_007798.1 hypothetical protein 823728 3931397 NSE_0931 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506795.1 823618 R 222891 CDS YP_506796.1 88608628 3931432 824044..824565 1 NC_007798.1 identified by match to protein family HMM PF01292; cytochrome b561 family protein 824565 3931432 NSE_0932 Neorickettsia sennetsu str. Miyayama cytochrome b561 family protein YP_506796.1 824044 D 222891 CDS YP_506797.1 88608651 3932181 824531..824869 1 NC_007798.1 hypothetical protein 824869 3932181 NSE_0933 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506797.1 824531 D 222891 CDS YP_506798.1 88608430 3931368 824862..825506 1 NC_007798.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD family hydrolase 825506 3931368 NSE_0934 Neorickettsia sennetsu str. Miyayama HAD family hydrolase YP_506798.1 824862 D 222891 CDS YP_506799.1 88608041 3932135 825577..826344 1 NC_007798.1 identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758; uracil-DNA glycosylase 826344 3932135 NSE_0935 Neorickettsia sennetsu str. Miyayama uracil-DNA glycosylase YP_506799.1 825577 D 222891 CDS YP_506800.1 88607983 3931920 826472..827101 1 NC_007798.1 identified by similarity to SP:P43262; putative vacJ lipoprotein 827101 3931920 NSE_0936 Neorickettsia sennetsu str. Miyayama putative vacJ lipoprotein YP_506800.1 826472 D 222891 CDS YP_506801.1 88607967 3931411 827085..827693 1 NC_007798.1 identified by similarity to PIR:E71718; hypothetical protein 827693 3931411 NSE_0937 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506801.1 827085 D 222891 CDS YP_506802.1 88608884 3932082 complement(827748..828050) 1 NC_007798.1 identified by similarity to GB:AAS14408.1; hypothetical protein 828050 3932082 NSE_0938 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506802.1 827748 R 222891 CDS YP_506803.1 88608033 3931489 828564..830048 1 NC_007798.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843; HlyD family type I secretion membrane fusion protein 830048 3931489 NSE_0939 Neorickettsia sennetsu str. Miyayama HlyD family type I secretion membrane fusion protein YP_506803.1 828564 D 222891 CDS YP_506804.1 88608582 3932292 830186..831325 1 NC_007798.1 identified by similarity to SP:P94527; AraM domain-containing protein 831325 3932292 NSE_0940 Neorickettsia sennetsu str. Miyayama AraM domain-containing protein YP_506804.1 830186 D 222891 CDS YP_506805.1 88608736 3932169 831330..831578 1 NC_007798.1 identified by similarity to PIR:D97574; match to protein family HMM PF03937; hypothetical protein 831578 3932169 NSE_0941 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506805.1 831330 D 222891 CDS YP_506806.1 88608452 3931818 complement(831656..832273) 1 NC_007798.1 identified by similarity to SP:O31752; match to protein family HMM PF01148; putative phosphatidate cytidylyltransferase 832273 3931818 NSE_0942 Neorickettsia sennetsu str. Miyayama putative phosphatidate cytidylyltransferase YP_506806.1 831656 R 222891 CDS YP_506807.1 88608425 3932207 complement(832379..832480) 1 NC_007798.1 hypothetical protein 832480 3932207 NSE_0943 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506807.1 832379 R 222891 CDS YP_506808.1 88608842 3931651 complement(832470..833162) 1 NC_007798.1 identified by similarity to SP:O82827; match to protein family HMM PF01255; match to protein family HMM TIGR00055; undecaprenyl diphosphate synthase 833162 uppS 3931651 uppS Neorickettsia sennetsu str. Miyayama undecaprenyl diphosphate synthase YP_506808.1 832470 R 222891 CDS YP_506809.1 88608154 3931454 complement(833159..833716) 1 NC_007798.1 identified by similarity to SP:P16174; match to protein family HMM PF01765; match to protein family HMM TIGR00496; ribosome recycling factor 833716 frr 3931454 frr Neorickettsia sennetsu str. Miyayama ribosome recycling factor YP_506809.1 833159 R 222891 CDS YP_506810.1 88608491 3931337 complement(833729..834430) 1 NC_007798.1 identified by match to protein family HMM PF00696; match to protein family HMM TIGR02075; uridylate kinase 834430 pyrH 3931337 pyrH Neorickettsia sennetsu str. Miyayama uridylate kinase YP_506810.1 833729 R 222891 CDS YP_506811.1 88608372 3932029 complement(834437..835309) 1 NC_007798.1 identified by similarity to SP:P80700; match to protein family HMM PF00627; match to protein family HMM PF00889; match to protein family HMM TIGR00116; translation elongation factor Ts 835309 tsf 3932029 tsf Neorickettsia sennetsu str. Miyayama translation elongation factor Ts YP_506811.1 834437 R 222891 CDS YP_506812.1 88608048 3932142 complement(835332..836228) 1 NC_007798.1 identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; 30S ribosomal protein S2 836228 rpsB 3932142 rpsB Neorickettsia sennetsu str. Miyayama 30S ribosomal protein S2 YP_506812.1 835332 R 222891 CDS YP_506813.1 88608823 3931691 complement(836299..836454) 1 NC_007798.1 hypothetical protein 836454 3931691 NSE_0949 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506813.1 836299 R 222891 CDS YP_506814.1 88608508 3931388 836412..837104 1 NC_007798.1 identified by match to protein family HMM PF01209; match to protein family HMM TIGR01934; ubiquinone/menaquinone biosynthesis methlytransferase UbiE 837104 ubiE 3931388 ubiE Neorickettsia sennetsu str. Miyayama ubiquinone/menaquinone biosynthesis methlytransferase UbiE YP_506814.1 836412 D 222891 CDS YP_506815.1 88608379 3931354 837101..837220 1 NC_007798.1 hypothetical protein 837220 3931354 NSE_0951 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506815.1 837101 D 222891 CDS YP_506816.1 88608329 3932237 837267..837428 1 NC_007798.1 hypothetical protein 837428 3932237 NSE_0952 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506816.1 837267 D 222891 CDS YP_506817.1 88608175 3931514 837687..838898 1 NC_007798.1 identified by similarity to SP:Q9R9N3; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01349; pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase 838898 pdhC 3931514 pdhC Neorickettsia sennetsu str. Miyayama pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase YP_506817.1 837687 D 222891 CDS YP_506818.1 88608846 3931655 839095..839865 1 NC_007798.1 putative phosphomethylpyrimidine kinase 839865 3931655 NSE_0954 Neorickettsia sennetsu str. Miyayama putative phosphomethylpyrimidine kinase YP_506818.1 839095 D 222891 CDS YP_506819.1 88608702 3931536 complement(839874..840374) 1 NC_007798.1 identified by match to protein family HMM PF02075; crossover junction endodeoxyribonuclease RuvC 840374 ruvC 3931536 ruvC Neorickettsia sennetsu str. Miyayama crossover junction endodeoxyribonuclease RuvC YP_506819.1 839874 R 222891 CDS YP_506820.1 88608796 3931592 complement(840464..841411) 1 NC_007798.1 identified by similarity to SP:P49814; match to protein family HMM PF00056; match to protein family HMM PF02866; malate dehydrogenase, NAD-dependent 841411 mdh 3931592 mdh Neorickettsia sennetsu str. Miyayama malate dehydrogenase, NAD-dependent YP_506820.1 840464 R 222891 CDS YP_506821.1 88608458 3931824 841754..842203 1 NC_007798.1 identified by match to protein family HMM PF00692; match to protein family HMM TIGR00576; deoxyuridine 5'triphosphate nucleotidohydrolase 842203 dut 3931824 dut Neorickettsia sennetsu str. Miyayama deoxyuridine 5'triphosphate nucleotidohydrolase YP_506821.1 841754 D 222891 CDS YP_506822.1 88608652 3932182 842498..845107 1 NC_007798.1 identified by similarity to SP:P09097; match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063; DNA gyrase subunit A 845107 gyrA 3932182 gyrA Neorickettsia sennetsu str. Miyayama DNA gyrase subunit A YP_506822.1 842498 D 222891 CDS YP_506823.1 88608771 3931774 complement(845304..846230) 1 NC_007798.1 identified by match to protein family HMM PF01926; match to protein family HMM PF07650; match to protein family HMM TIGR00231; match to protein family HMM TIGR00436; GTP-binding protein Era 846230 era 3931774 era Neorickettsia sennetsu str. Miyayama GTP-binding protein Era YP_506823.1 845304 R 222891 CDS YP_506824.1 88608410 3932192 complement(846297..847226) 1 NC_007798.1 identified by similarity to SP:P71019; match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase 847226 fabD 3932192 fabD Neorickettsia sennetsu str. Miyayama malonyl CoA-acyl carrier protein transacylase YP_506824.1 846297 R 222891 CDS YP_506825.1 88608559 3931738 complement(847304..849043) 1 NC_007798.1 identified by similarity to SP:P02923; match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM TIGR01391; DNA primase 849043 dnaG 3931738 dnaG Neorickettsia sennetsu str. Miyayama DNA primase YP_506825.1 847304 R 222891 CDS YP_506826.1 88608125 3932117 complement(849084..849449) 1 NC_007798.1 identified by similarity to SP:P24224; match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556; holo-(acyl-carrier protein) synthase 849449 acpS 3932117 acpS Neorickettsia sennetsu str. Miyayama holo-(acyl-carrier protein) synthase YP_506826.1 849084 R 222891 CDS YP_506827.1 88608316 3932224 849584..850786 1 NC_007798.1 hypothetical protein 850786 3932224 NSE_0963 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506827.1 849584 D 222891 CDS YP_506828.1 88608088 3931900 complement(850940..851497) 1 NC_007798.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 851497 dcd 3931900 dcd Neorickettsia sennetsu str. Miyayama deoxycytidine triphosphate deaminase YP_506828.1 850940 R 222891 CDS YP_506829.1 88607982 3931919 851895..852944 1 NC_007798.1 identified by similarity to SP:P12045; match to protein family HMM PF02222; match to protein family HMM TIGR01161; phosphoribosylaminoimidazole carboxylase, ATPase subunit 852944 purK 3931919 purK Neorickettsia sennetsu str. Miyayama phosphoribosylaminoimidazole carboxylase, ATPase subunit YP_506829.1 851895 D 222891 CDS YP_506830.1 88608433 3931371 complement(853024..853659) 1 NC_007798.1 identified by similarity to GB:BAB54269.1; hypothetical protein 853659 3931371 NSE_0966 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506830.1 853024 R 222891 CDS YP_506831.1 88608556 3931735 853738..855135 1 NC_007798.1 identified by match to protein family HMM TIGR01630; phage protein 855135 3931735 NSE_0967 Neorickettsia sennetsu str. Miyayama phage protein YP_506831.1 853738 D 222891 CDS YP_506832.1 88608180 3931747 855542..856516 1 NC_007798.1 identified by similarity to SP:P42503; match to protein family HMM PF01208; match to protein family HMM TIGR01464; uroporphyrinogen decarboxylase 856516 hemE 3931747 hemE Neorickettsia sennetsu str. Miyayama uroporphyrinogen decarboxylase YP_506832.1 855542 D 222891 CDS YP_506833.1 88607989 3931926 856566..857513 1 NC_007798.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 857513 nadA 3931926 nadA Neorickettsia sennetsu str. Miyayama quinolinate synthetase YP_506833.1 856566 D 222891 CDS YP_506834.1 88608096 3931908 complement(857539..858024) 1 NC_007798.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01510; pantetheine-phosphate adenylyltransferase 858024 coaD 3931908 coaD Neorickettsia sennetsu str. Miyayama pantetheine-phosphate adenylyltransferase YP_506834.1 857539 R 222891 CDS YP_506835.1 88608611 3931996 complement(858028..858852) 1 NC_007798.1 identified by similarity to GB:AAS14837.1; hypothetical protein 858852 3931996 NSE_0971 Neorickettsia sennetsu str. Miyayama hypothetical protein YP_506835.1 858028 R 222891 CDS