-- dump date 20111121_013546 -- class Genbank::CDS -- table cds_note -- id note YP_505904.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_505906.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_505908.1 identified by similarity to GB:AAD03802.1; match to protein family HMM PF01547 YP_505909.1 identified by similarity to GB:AAS13897.1; match to protein family HMM PF03652 YP_505910.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537 YP_505912.1 identified by similarity to SP:P06978; match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_505913.1 identified by similarity to SP:P29922; match to protein family HMM PF00499 YP_505915.1 identified by similarity to SP:P50940; match to protein family HMM PF00420 YP_505917.1 identified by similarity to SP:P50939; match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974 YP_505918.1 identified by match to protein family HMM PF00023 YP_505919.1 identified by similarity to SP:P28720; match to protein family HMM PF01702; match to protein family HMM TIGR00430; match to protein family HMM TIGR00449 YP_505922.1 identified by similarity to SP:P04475; match to protein family HMM PF00012; match to protein family HMM TIGR02350 YP_505923.1 identified by match to protein family HMM PF01416; match to protein family HMM TIGR00071 YP_505932.1 identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697 YP_505934.1 identified by similarity to SP:P43848; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00878 YP_505935.1 identified by similarity to SP:O05260; match to protein family HMM PF00420 YP_505938.1 identified by similarity to GB:AAS14858.1; match to protein family HMM PF04452; match to protein family HMM TIGR00046 YP_505940.1 identified by similarity to GB:AAS14602.1 YP_505941.1 identified by similarity to SP:P08374; match to protein family HMM TIGR00690 YP_505942.1 identified by similarity to SP:P54575; match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083 YP_505944.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01842 YP_505945.1 identified by similarity to SP:Q05069 YP_505946.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683 YP_505948.1 identified by similarity to SP:P10446; match to protein family HMM PF01127 YP_505949.1 identified by similarity to GB:AAC17941.1 YP_505950.1 identified by similarity to SP:P35868; match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456 YP_505951.1 identified by match to protein family HMM PF01027 YP_505953.1 identified by similarity to GB:AAS13913.1 YP_505954.1 Catalyzes the transfer of electrons from NADH to quinone YP_505955.1 identified by match to protein family HMM PF00146 YP_505956.1 identified by similarity to SP:P27291; match to protein family HMM PF04972 YP_505957.2 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_505958.1 identified by similarity to SP:P05055; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 YP_505959.1 identified by similarity to SP:P05766; match to protein family HMM PF00312; match to protein family HMM TIGR00952 YP_505960.1 identified by similarity to SP:P12047; match to protein family HMM PF00206; match to protein family HMM TIGR00928 YP_505961.1 identified by similarity to SP:P02418; match to protein family HMM PF01281; match to protein family HMM PF03948; match to protein family HMM TIGR00158 YP_505962.1 identified by similarity to SP:P02374; match to protein family HMM PF01084; match to protein family HMM TIGR00165 YP_505963.1 identified by similarity to SP:P02358; match to protein family HMM PF01250; match to protein family HMM TIGR00166 YP_505965.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710 YP_505966.1 identified by match to protein family HMM PF00892 YP_505968.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_505969.1 identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368 YP_505978.1 identified by similarity to GB:BAC12908.1 YP_505985.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_505986.1 identified by match to protein family HMM PF00383 YP_505988.1 identified by similarity to GB:AAL93909.1 YP_505995.1 identified by similarity to SP:P23882; match to protein family HMM PF00551; match to protein family HMM TIGR00460 YP_505997.1 identified by match to protein family HMM PF02540; match to protein family HMM TIGR00552 YP_506000.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00214 YP_506001.1 identified by match to protein family HMM PF01509; match to protein family HMM TIGR00431 YP_506019.1 identified by similarity to SP:P03815; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724 YP_506020.1 identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757 YP_506022.1 identified by similarity to SP:O06594; match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078 YP_506023.1 identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002 YP_506024.1 identified by similarity to GB:CAE25687.1; match to protein family HMM PF05239; match to protein family HMM TIGR02273 YP_506025.1 identified by match to protein family HMM PF02646 YP_506026.1 identified by similarity to GB:AAS13843.1 YP_506027.1 identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945 YP_506028.1 identified by match to protein family HMM TIGR00536 YP_506031.1 identified by similarity to SP:P05036; match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM TIGR00962 YP_506032.1 identified by match to protein family HMM PF00213 YP_506033.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727 YP_506034.1 identified by match to protein family HMM PF02542; match to protein family HMM TIGR00151 YP_506036.1 identified by match to protein family HMM PF02687; match to protein family HMM TIGR02212 YP_506037.1 identified by similarity to SP:P33643; match to protein family HMM PF00849 YP_506041.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate YP_506043.1 identified by similarity to SP:P21891; match to protein family HMM PF00589; match to protein family HMM PF02899 YP_506045.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_506049.1 identified by match to protein family HMM TIGR01730 YP_506051.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_506052.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR00857 YP_506054.1 identified by similarity to SP:P00957; match to protein family HMM PF01411; match to protein family HMM PF07973; match to protein family HMM TIGR00344 YP_506056.1 identified by similarity to SP:P72958 YP_506058.1 identified by similarity to SP:P30964 YP_506059.1 identified by similarity to SP:P18274; match to protein family HMM PF01258 YP_506060.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor YP_506061.1 identified by similarity to SP:P25662; match to protein family HMM PF01145; match to protein family HMM TIGR01933 YP_506062.1 identified by similarity to SP:P25661; match to protein family HMM PF01145; match to protein family HMM TIGR01932 YP_506063.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037 YP_506064.1 identified by similarity to SP:P10443; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594 YP_506065.1 identified by match to protein family HMM PF01713 YP_506066.1 identified by similarity to SP:P00583; match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663 YP_506067.1 catalyzes the formation of 2-oxoglutarate from isocitrate YP_506068.1 identified by match to protein family HMM PF03547 YP_506070.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_506071.1 heat shock protein involved in degradation of misfolded proteins YP_506072.1 heat shock protein involved in degradation of misfolded proteins YP_506073.1 identified by match to protein family HMM PF01128 YP_506074.1 identified by match to protein family HMM PF01180; match to protein family HMM TIGR01036 YP_506075.1 identified by similarity to SP:P20691; match to protein family HMM PF00275 YP_506080.1 identified by similarity to SP:P15639; match to protein family HMM PF01808; match to protein family HMM PF02142; match to protein family HMM TIGR00355 YP_506081.1 identified by similarity to SP:P04425 YP_506084.1 identified by similarity to GB:CAE09398.1; match to protein family HMM PF03060 YP_506085.1 identified by similarity to GB:AAR38359.1 YP_506086.1 identified by similarity to SP:P77406; match to protein family HMM PF01594 YP_506087.1 identified by match to protein family HMM PF00873 YP_506089.1 identified by similarity to SP:P00497; match to protein family HMM PF00156; match to protein family HMM PF00310; match to protein family HMM TIGR01134 YP_506091.1 identified by match to protein family HMM PF01132 YP_506093.1 identified by similarity to GB:AAL95344.1 YP_506094.1 identified by similarity to SP:P49999 YP_506096.1 identified by match to protein family HMM PF01170; match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_506097.1 identified by match to protein family HMM PF01722 YP_506098.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365 YP_506099.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_506101.1 identified by similarity to SP:P94461; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00595 YP_506104.1 identified by match to protein family HMM PF06055 YP_506105.1 identified by similarity to GB:AAM00415.1; match to protein family HMM PF03524 YP_506106.1 identified by similarity to GB:AAS14504.1 YP_506107.1 identified by match to protein family HMM PF01025 YP_506108.1 identified by similarity to SP:P00953; match to protein family HMM PF00579; match to protein family HMM TIGR00233 YP_506110.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_506111.1 identified by similarity to SP:P08312; match to protein family HMM PF01409; match to protein family HMM TIGR00468 YP_506112.1 identified by similarity to SP:P37351; match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120 YP_506113.1 identified by similarity to SP:P34895; match to protein family HMM PF00155; match to protein family HMM PF00464; match to protein family HMM PF01212 YP_506115.1 identified by similarity to SP:P71350; match to protein family HMM PF02581 YP_506117.1 identified by similarity to SP:P38100; match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369 YP_506118.1 identified by similarity to SP:P46473; match to protein family HMM PF01523 YP_506119.1 identified by match to protein family HMM PF00709 YP_506121.1 identified by similarity to SP:P33636; match to protein family HMM PF00085 YP_506122.1 identified by similarity to SP:P46919; match to protein family HMM PF01210; match to protein family HMM PF07479 YP_506123.1 identified by similarity to SP:P25531; match to protein family HMM PF04002; match to protein family HMM TIGR00608 YP_506124.1 identified by match to protein family HMM PF01381 YP_506126.1 identified by match to protein family HMM PF00271; match to protein family HMM PF01043; match to protein family HMM PF07516; match to protein family HMM PF07517; match to protein family HMM TIGR00963 YP_506128.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_506129.1 identified by similarity to SP:P09028; match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_506130.1 identified by similarity to SP:P36175; match to protein family HMM PF00814; match to protein family HMM TIGR00329 YP_506131.1 identified by match to protein family HMM TIGR02122 YP_506132.1 identified by match to protein family HMM PF00348 YP_506134.1 identified by match to protein family HMM PF01925 YP_506135.1 identified by similarity to GB:CAC45110.1 YP_506136.1 identified by similarity to GB:AAB46982.1 YP_506140.1 identified by similarity to SP:P20625; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_506141.1 identified by similarity to SP:Q48269; match to protein family HMM PF01066 YP_506142.1 identified by match to protein family HMM PF02666; match to protein family HMM TIGR00164 YP_506143.1 identified by similarity to SP:Q8YEA4; match to protein family HMM PF02130; match to protein family HMM TIGR00043 YP_506144.1 identified by match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019 YP_506145.1 identified by similarity to SP:P80886; match to protein family HMM PF00549; match to protein family HMM PF02222; match to protein family HMM TIGR01016 YP_506146.1 identified by similarity to SP:P77785; match to protein family HMM PF02769; match to protein family HMM TIGR01379 YP_506147.1 identified by match to protein family HMM PF00121; match to protein family HMM TIGR00419 YP_506148.1 identified by match to protein family HMM PF00581 YP_506149.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_506150.1 identified by similarity to SP:P02436; match to protein family HMM PF00471; match to protein family HMM TIGR01023 YP_506151.1 involved in the insertion of copper into subunit I of cytochrome C oxidase YP_506152.1 identified by similarity to SP:P03004; match to protein family HMM PF00308; match to protein family HMM TIGR00362 YP_506153.1 identified by similarity to SP:Q56732; match to protein family HMM PF01118; match to protein family HMM PF02774 YP_506155.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186 YP_506156.1 identified by match to protein family HMM PF00338; match to protein family HMM TIGR01049 YP_506157.1 identified by similarity to SP:P02386; match to protein family HMM PF00297 YP_506158.1 identified by similarity to SP:P28601; match to protein family HMM PF00573 YP_506159.1 identified by match to protein family HMM PF00276 YP_506160.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_506161.1 identified by similarity to SP:P12731; match to protein family HMM PF00203; match to protein family HMM TIGR01050 YP_506162.1 identified by similarity to SP:P02423; match to protein family HMM PF00237; match to protein family HMM TIGR01044 YP_506163.1 identified by similarity to SP:P02352; match to protein family HMM PF00189; match to protein family HMM PF00417; match to protein family HMM PF07650; match to protein family HMM TIGR01009 YP_506164.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_506165.1 identified by match to protein family HMM TIGR00012 YP_506166.1 identified by match to protein family HMM PF00366 YP_506167.1 identified by similarity to SP:P02411; match to protein family HMM PF00238; match to protein family HMM TIGR01067 YP_506168.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_506169.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_506170.1 identified by match to protein family HMM PF00253 YP_506171.1 identified by similarity to SP:P02361; match to protein family HMM PF00410 YP_506172.1 identified by similarity to SP:P04448; match to protein family HMM PF00347 YP_506173.1 identified by similarity to SP:P46899 YP_506174.1 identified by similarity to SP:P21467; match to protein family HMM PF00333; match to protein family HMM PF03719; match to protein family HMM TIGR01021 YP_506175.1 identified by similarity to SP:P19946; match to protein family HMM PF01305 YP_506176.1 identified by similarity to SP:P03844; match to protein family HMM PF00344; match to protein family HMM TIGR00967 YP_506177.1 identified by similarity to SP:P10772; match to protein family HMM PF00406 YP_506178.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_506179.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_506180.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_506181.1 identified by similarity to SP:P02416; match to protein family HMM PF01196; match to protein family HMM TIGR00059 YP_506182.1 identified by similarity to PIR:E82767 YP_506183.1 identified by similarity to SP:P18200; match to protein family HMM PF04608 YP_506184.1 identified by similarity to SP:P03000; match to protein family HMM PF00707; match to protein family HMM PF05198 YP_506185.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_506187.1 identified by match to protein family HMM PF00111 YP_506188.1 identified by similarity to SP:P36541; match to protein family HMM PF00012 YP_506189.1 identified by similarity to SP:P36540; match to protein family HMM PF00226; match to protein family HMM PF07743 YP_506191.1 identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049 YP_506192.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR01999 YP_506193.1 identified by similarity to SP:P39171; match to protein family HMM PF00266; match to protein family HMM PF01212 YP_506194.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_506195.1 identified by similarity to GB:AAS14787.1 YP_506196.1 identified by match to protein family HMM PF01386; match to protein family HMM TIGR00731 YP_506197.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_506198.1 identified by similarity to GB:AAB41630.1; match to protein family HMM TIGR02049 YP_506199.1 identified by match to protein family HMM PF01121; match to protein family HMM TIGR00152 YP_506200.1 identified by similarity to SP:O33196; match to protein family HMM PF01513 YP_506201.1 identified by similarity to SP:P37687; match to protein family HMM PF00462; match to protein family HMM TIGR02181 YP_506202.1 identified by similarity to SP:Q59753; match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542 YP_506203.1 identified by similarity to SP:P15716; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724 YP_506205.1 identified by match to protein family HMM PF00005 YP_506207.1 identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360 YP_506208.1 identified by match to protein family HMM PF01571 YP_506209.1 identified by similarity to SP:Q9ZG87; match to protein family HMM PF02699; match to protein family HMM TIGR00739 YP_506210.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_506211.1 identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009 YP_506212.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_506213.1 identified by match to protein family HMM PF03364 YP_506214.1 identified by similarity to GB:AAS14071.1; match to protein family HMM PF03618 YP_506216.1 identified by match to protein family HMM PF00571 YP_506219.1 identified by similarity to SP:P80448; match to protein family HMM PF00037 YP_506220.1 identified by similarity to GB:AAS14508.1 YP_506222.1 identified by similarity to SP:P21888; match to protein family HMM PF01406; match to protein family HMM TIGR00435 YP_506224.1 identified by similarity to SP:P49849; match to protein family HMM PF00488; match to protein family HMM PF01624; match to protein family HMM PF05188; match to protein family HMM PF05190; match to protein family HMM PF05192; match to protein family HMM TIGR01070 YP_506225.1 identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163 YP_506226.1 identified by similarity to SP:P07906; match to protein family HMM PF00557; match to protein family HMM TIGR00500 YP_506229.1 identified by match to protein family HMM PF02600 YP_506230.1 identified by similarity to SP:P48194; match to protein family HMM PF04542; match to protein family HMM PF04545 YP_506231.1 identified by similarity to GB:AAK00615.2; match to protein family HMM PF00091; match to protein family HMM PF03953; match to protein family HMM TIGR00065 YP_506232.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_506234.1 identified by similarity to SP:P00951; match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234 YP_506235.1 identified by match to protein family HMM PF00210; match to protein family HMM PF02915; match to protein family HMM TIGR00754 YP_506236.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763 YP_506237.1 identified by similarity to GB:AAK25708.1; match to protein family HMM PF02581 YP_506238.1 identified by match to protein family HMM PF03653 YP_506239.1 identified by similarity to SP:P06201; match to protein family HMM PF00120; match to protein family HMM PF03951 YP_506241.1 identified by similarity to SP:Q89K77; match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_506245.1 identified by match to protein family HMM PF00580 YP_506246.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_506248.1 identified by match to protein family HMM TIGR00809 YP_506249.1 identified by match to protein family HMM PF04280 YP_506251.1 identified by similarity to SP:P06992; match to protein family HMM PF00398; match to protein family HMM TIGR00755 YP_506255.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_506256.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_506258.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_506260.1 identified by similarity to SP:P28225; match to protein family HMM PF01243 YP_506262.1 identified by similarity to SP:Q08111; match to protein family HMM PF01207; match to protein family HMM TIGR00737 YP_506263.1 identified by match to protein family HMM PF01975; match to protein family HMM TIGR00087 YP_506265.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_506269.1 identified by similarity to SP:P28304; match to protein family HMM PF00107 YP_506272.1 identified by match to protein family HMM PF04800 YP_506273.1 identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988 YP_506274.1 identified by similarity to SP:P06983; match to protein family HMM PF01379; match to protein family HMM PF03900; match to protein family HMM TIGR00212 YP_506275.1 identified by similarity to SP:P34943; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993 YP_506277.1 identified by similarity to SP:P43862; match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_506278.1 identified by similarity to GB:AAS14547.1 YP_506280.1 identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 YP_506281.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_506282.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765 YP_506283.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_506284.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_506285.1 identified by similarity to SP:P15015 YP_506286.1 identified by similarity to PIR:AI0500 YP_506288.1 identified by similarity to SP:P51963; match to protein family HMM PF00885; match to protein family HMM TIGR00114 YP_506289.1 identified by match to protein family HMM PF02096 YP_506291.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_506293.1 identified by similarity to SP:P07011; match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00019 YP_506294.1 identified by similarity to GB:AAG30826.1; match to protein family HMM PF01553 YP_506295.1 identified by similarity to SP:P02349; match to protein family HMM PF00575 YP_506296.1 identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706 YP_506297.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_506298.1 Catalyzes the rate-limiting step in dNTP synthesis YP_506299.1 identified by match to protein family HMM PF01230 YP_506301.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_506302.1 identified by similarity to SP:P31773; match to protein family HMM PF00156 YP_506303.1 identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00966 YP_506306.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_506308.1 identified by similarity to PIR:H97753 YP_506309.1 identified by similarity to GB:CAB51029.1; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241 YP_506312.1 identified by similarity to SP:P07395; match to protein family HMM PF01588; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472 YP_506313.1 identified by similarity to SP:P28264; match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_506315.1 identified by similarity to SP:P29919; match to protein family HMM PF00507 YP_506317.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_506318.1 identified by similarity to SP:O84971; match to protein family HMM PF00329; match to protein family HMM TIGR01961 YP_506319.1 identified by similarity to SP:O34425; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_506321.1 identified by similarity to SP:P50314; match to protein family HMM PF00162 YP_506323.1 identified by similarity to SP:P22565; match to protein family HMM PF02401; match to protein family HMM TIGR00216 YP_506327.1 identified by match to protein family HMM PF00563 YP_506328.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_506329.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_506331.1 identified by match to protein family HMM PF00106 YP_506332.1 identified by similarity to SP:P46352; match to protein family HMM PF00589; match to protein family HMM PF02899 YP_506333.1 identified by similarity to GB:AAS14677.1 YP_506337.1 identified by similarity to SP:P80922 YP_506338.1 identified by similarity to SP:P39435; match to protein family HMM PF00109; match to protein family HMM PF02801 YP_506339.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_506340.1 identified by similarity to SP:Q9ZC99; match to protein family HMM TIGR02281 YP_506343.1 identified by match to protein family HMM PF01521 YP_506345.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR01353 YP_506346.1 identified by similarity to GB:AAS13963.1; match to protein family HMM TIGR00613 YP_506347.1 identified by similarity to GB:AAN30317.1; match to protein family HMM PF07031 YP_506348.1 identified by similarity to SP:P54533; match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01350 YP_506349.1 identified by similarity to SP:Q89WK9 YP_506350.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01769 YP_506351.1 identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554 YP_506352.1 identified by match to protein family HMM PF00580 YP_506353.1 identified by match to protein family HMM PF03054; match to protein family HMM TIGR00420 YP_506355.1 identified by similarity to SP:P03007; match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01406 YP_506356.1 identified by match to protein family HMM PF00557 YP_506357.1 identified by similarity to GB:AAB81313.1 YP_506358.1 identified by similarity to SP:P30323; match to protein family HMM PF00034 YP_506359.1 identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639 YP_506360.1 identified by similarity to SP:P27888; match to protein family HMM PF00883; match to protein family HMM PF02789 YP_506361.1 identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM PF02938; match to protein family HMM TIGR00459 YP_506362.1 identified by similarity to SP:P96613 YP_506363.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_506364.1 identified by match to protein family HMM PF00005 YP_506365.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411 YP_506367.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_506369.1 identified by similarity to SP:P26282; match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_506370.1 identified by similarity to SP:P26281; match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_506372.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_506373.1 identified by similarity to GB:AAM05284.1 YP_506374.1 identified by similarity to SP:Q92FZ0; match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_506376.1 identified by similarity to GB:AAB61695.1; match to protein family HMM PF00004; match to protein family HMM TIGR02397 YP_506377.1 identified by similarity to SP:Q9L3B2; match to protein family HMM PF05312 YP_506379.1 molecular chaperone YP_506380.1 identified by match to protein family HMM PF00023 YP_506381.1 identified by match to protein family HMM PF00795; match to protein family HMM TIGR00546 YP_506383.1 identified by similarity to SP:P25539; match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326 YP_506384.1 identified by similarity to SP:O87703; match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 YP_506385.1 identified by similarity to SP:P31055 YP_506386.1 identified by similarity to SP:P00907; match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368 YP_506387.1 identified by similarity to SP:Q9A3C9 YP_506389.1 identified by similarity to GB:BAB50585.1; match to protein family HMM PF06242 YP_506390.1 identified by match to protein family HMM PF00133; match to protein family HMM TIGR00396 YP_506392.1 identified by match to protein family HMM PF01381 YP_506393.1 identified by similarity to SP:P30962; match to protein family HMM PF01578; match to protein family HMM TIGR01191 YP_506394.1 identified by similarity to SP:P05654; match to protein family HMM PF00185; match to protein family HMM PF02729 YP_506396.1 involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP YP_506397.1 identified by similarity to GB:AAS13966.1 YP_506398.1 identified by match to protein family HMM PF05088 YP_506402.1 identified by similarity to SP:P45631; match to protein family HMM PF00749 YP_506403.1 identified by similarity to GB:CAD72092.1 YP_506404.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE YP_506405.1 identified by similarity to SP:P03003; match to protein family HMM PF00013; match to protein family HMM TIGR01953; match to protein family HMM TIGR01954 YP_506406.1 identified by similarity to SP:P17889; match to protein family HMM PF00009; match to protein family HMM PF01926; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00487 YP_506407.1 identified by similarity to SP:Q8XJR9 YP_506408.1 identified by similarity to GB:AAS14586.1 YP_506409.1 identified by similarity to SP:P06981; match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM PF03060; match to protein family HMM TIGR01302 YP_506411.1 identified by match to protein family HMM PF02470 YP_506413.1 identified by match to protein family HMM PF01612 YP_506414.1 identified by similarity to SP:P41079; match to protein family HMM PF00154; match to protein family HMM TIGR02012 YP_506415.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_506417.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_506418.1 identified by similarity to SP:P08622; match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; match to protein family HMM TIGR02349 YP_506419.1 identified by similarity to SP:P77254; match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00650 YP_506420.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin) YP_506421.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01367 YP_506423.1 identified by similarity to SP:P37105; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978 YP_506425.1 identified by match to protein family HMM PF06271 YP_506427.1 identified by match to protein family HMM PF03060 YP_506428.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_506429.1 identified by similarity to SP:P28692; match to protein family HMM PF01728 YP_506430.1 identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041 YP_506431.1 identified by similarity to SP:P52993; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01347 YP_506432.1 identified by similarity to SP:P24231; match to protein family HMM PF01523 YP_506434.1 identified by match to protein family HMM PF02630 YP_506435.1 identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665 YP_506436.1 identified by match to protein family HMM PF04586; match to protein family HMM TIGR01543 YP_506438.1 identified by similarity to SP:P23851; match to protein family HMM PF00849; match to protein family HMM PF01479 YP_506440.1 identified by similarity to SP:P09625; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292 YP_506441.1 identified by similarity to GB:AAM00601.1; match to protein family HMM PF00578 YP_506442.1 identified by similarity to SP:Q59636; match to protein family HMM PF00334 YP_506443.1 identified by match to protein family HMM PF03023 YP_506445.1 identified by match to protein family HMM PF00361 YP_506448.1 Catalyzes the transfer of electrons from NADH to quinone YP_506450.1 identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414 YP_506451.1 identified by similarity to SP:P38436; match to protein family HMM PF01715 YP_506453.1 identified by similarity to SP:P33927; match to protein family HMM PF01578 YP_506455.1 identified by similarity to SP:P08576; match to protein family HMM PF01330 YP_506456.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_506459.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_506460.1 identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057 YP_506461.1 identified by match to protein family HMM PF00753 YP_506462.1 identified by similarity to GB:AAS14115.1; match to protein family HMM PF04384 YP_506463.1 identified by similarity to SP:P81288; match to protein family HMM PF01479; match to protein family HMM TIGR01017 YP_506465.1 identified by similarity to SP:P16655 YP_506467.1 identified by similarity to SP:O33723; match to protein family HMM PF01227 YP_506468.1 identified by match to protein family HMM PF00231 YP_506470.1 identified by similarity to SP:P18579; match to protein family HMM PF01565 YP_506472.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_506474.1 identified by similarity to SP:P39814; match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01051 YP_506478.1 identified by match to protein family HMM PF01596 YP_506480.1 identified by similarity to SP:P25516; match to protein family HMM PF00330; match to protein family HMM PF00694; match to protein family HMM TIGR01341 YP_506481.1 identified by similarity to GB:AAS14410.1; match to protein family HMM PF02636 YP_506483.1 identified by similarity to SP:Q05873; match to protein family HMM PF00133 YP_506484.1 identified by similarity to SP:P28353; match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020 YP_506489.1 identified by similarity to SP:P14160; match to protein family HMM PF01119; match to protein family HMM PF02518; match to protein family HMM TIGR00585 YP_506492.1 identified by similarity to SP:P12996; match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433 YP_506493.1 identified by similarity to SP:P53556; match to protein family HMM PF00155 YP_506495.1 identified by similarity to SP:P12999; match to protein family HMM TIGR02072 YP_506497.1 identified by similarity to SP:P53558; match to protein family HMM TIGR00347 YP_506498.1 identified by similarity to SP:P22805; match to protein family HMM PF00202; match to protein family HMM TIGR00508 YP_506500.1 identified by match to protein family HMM PF00116; match to protein family HMM PF02790 YP_506501.1 identified by similarity to SP:Q08855; match to protein family HMM PF00115 YP_506502.1 converts protoheme IX and farnesyl diphosphate to heme O YP_506503.1 identified by similarity to SP:P23136; match to protein family HMM PF00355; match to protein family HMM TIGR01409; match to protein family HMM TIGR01416 YP_506504.1 identified by similarity to SP:P23134; match to protein family HMM PF00032; match to protein family HMM PF00033 YP_506505.1 identified by match to protein family HMM PF02167 YP_506506.1 identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR01129 YP_506507.1 Involved in ubiquinone biosynthesis YP_506508.1 identified by match to protein family HMM TIGR00747 YP_506510.1 identified by similarity to SP:P71018; match to protein family HMM PF02504; match to protein family HMM TIGR00182 YP_506511.1 identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031 YP_506514.1 Catalyzes the transfer of electrons from NADH to quinone YP_506515.1 identified by similarity to SP:P27854; match to protein family HMM PF03109 YP_506516.1 identified by similarity to GB:AAS14721.1 YP_506518.1 identified by similarity to SP:P02341; match to protein family HMM PF00216 YP_506519.1 identified by similarity to PIR:AC3292; match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_506520.1 identified by match to protein family HMM PF00118; match to protein family HMM TIGR02348 YP_506521.1 identified by match to protein family HMM PF00166 YP_506524.1 identified by similarity to SP:P42977; match to protein family HMM PF01743 YP_506527.1 identified by match to protein family HMM PF00926; match to protein family HMM TIGR00506 YP_506528.1 identified by match to protein family HMM PF01580 YP_506536.1 identified by match to protein family HMM PF00583 YP_506539.1 identified by similarity to PIR:E97700; match to protein family HMM PF00970 YP_506541.1 identified by similarity to SP:P21774; match to protein family HMM PF07977 YP_506543.1 identified by similarity to SP:P25716; match to protein family HMM PF00106 YP_506545.1 identified by similarity to SP:P00647; match to protein family HMM PF00075 YP_506546.1 identified by similarity to GB:AAK22816.1 YP_506547.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_506549.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01350 YP_506551.1 identified by similarity to SP:Q9EXN7; match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231 YP_506553.1 identified by similarity to SP:O34996; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593 YP_506554.1 identified by match to protein family HMM PF00510 YP_506555.1 identified by similarity to SP:Q9ZE20; match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000; match to protein family HMM TIGR02386 YP_506556.1 identified by similarity to GB:AAP75727.1; match to protein family HMM PF00562; match to protein family HMM PF04560; match to protein family HMM PF04561; match to protein family HMM PF04565; match to protein family HMM TIGR02013 YP_506557.1 identified by similarity to SP:P29396; match to protein family HMM PF00542 YP_506558.1 identified by match to protein family HMM PF00466 YP_506559.1 identified by similarity to SP:P04447; match to protein family HMM PF00687 YP_506560.1 identified by similarity to SP:P29395; match to protein family HMM PF03946 YP_506561.1 identified by similarity to SP:P16921 YP_506562.1 identified by similarity to SP:Q06799; match to protein family HMM PF00584; match to protein family HMM TIGR00964 YP_506563.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_506564.1 identified by similarity to SP:P41084; match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231; match to protein family HMM TIGR00484 YP_506565.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_506566.2 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_506567.1 identified by similarity to SP:Q54900; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851 YP_506568.1 identified by similarity to SP:P29925; match to protein family HMM PF00361; match to protein family HMM TIGR01972 YP_506569.1 identified by similarity to SP:P50973; match to protein family HMM PF00361 YP_506570.1 identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM TIGR00121 YP_506571.1 identified by similarity to SP:O66126; match to protein family HMM PF00348 YP_506572.1 identified by similarity to SP:P78061; match to protein family HMM PF00120 YP_506573.1 identified by similarity to PIR:A97716; match to protein family HMM PF02405 YP_506574.1 identified by match to protein family HMM PF00005 YP_506575.1 identified by match to protein family HMM PF00005 YP_506576.1 identified by similarity to SP:Q9ZED0; match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_506577.1 identified by similarity to SP:P10442; match to protein family HMM PF01351 YP_506580.1 identified by similarity to SP:P51010; match to protein family HMM PF00456; match to protein family HMM PF02779 YP_506582.1 identified by match to protein family HMM PF00361 YP_506583.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_506585.1 identified by similarity to GB:AAS14667.1 YP_506586.1 identified by similarity to GB:BAB53707.1; match to protein family HMM PF03548 YP_506587.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125 YP_506588.1 identified by similarity to GB:AAA62789.1; match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_506590.1 part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase YP_506591.1 identified by similarity to SP:Q05865; match to protein family HMM TIGR01499 YP_506593.1 identified by similarity to SP:P25522; match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00450; match to protein family HMM TIGR00650 YP_506594.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244 YP_506595.1 identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_506596.1 identified by match to protein family HMM PF00288 YP_506597.1 identified by similarity to SP:P06982; match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059 YP_506599.1 identified by match to protein family HMM PF00578 YP_506600.1 identified by similarity to PIR:T48676; match to protein family HMM PF00474 YP_506601.1 identified by match to protein family HMM PF00805 YP_506602.1 Essential for recycling GMP and indirectly, cGMP YP_506606.1 identified by similarity to SP:P51042; match to protein family HMM PF00285 YP_506609.1 identified by similarity to SP:P37869; match to protein family HMM PF00113; match to protein family HMM PF03952; match to protein family HMM TIGR01060 YP_506610.1 identified by similarity to SP:P17288; match to protein family HMM PF00719 YP_506611.1 identified by similarity to GB:AAS14435.1 YP_506613.1 identified by similarity to SP:P04805; match to protein family HMM PF00749; match to protein family HMM TIGR00464 YP_506614.1 identified by similarity to SP:O66905; match to protein family HMM PF02660 YP_506615.1 identified by similarity to GB:AAM00416.1; match to protein family HMM PF02534 YP_506616.1 identified by similarity to GB:AAM00414.1; match to protein family HMM PF00437 YP_506617.1 identified by similarity to GB:AAM00413.1; match to protein family HMM PF03743 YP_506618.1 identified by similarity to GB:AAM00421.1; match to protein family HMM PF03524 YP_506619.1 identified by similarity to GB:AAM00420.1; match to protein family HMM PF04335 YP_506621.1 identified by similarity to SP:P43525; match to protein family HMM PF00925; match to protein family HMM TIGR00505 YP_506622.1 catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acyltransferase within the complex. The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2); it contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase YP_506626.1 identified by similarity to SP:P22257; match to protein family HMM PF00254 YP_506627.1 identified by similarity to SP:P19245; match to protein family HMM PF00574 YP_506628.1 binds and unfolds substrates as part of the ClpXP protease YP_506630.1 identified by similarity to GB:AAS14513.1 YP_506631.1 identified by similarity to SP:P00961; match to protein family HMM PF02092; match to protein family HMM PF05746; match to protein family HMM TIGR00211 YP_506632.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_506633.1 identified by similarity to SP:Q02635; match to protein family HMM PF00155 YP_506634.1 identified by similarity to SP:P02339; match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_506635.1 identified by similarity to GB:AAS14534.1; match to protein family HMM TIGR02396 YP_506636.1 identified by similarity to SP:P19669; match to protein family HMM PF00923; match to protein family HMM TIGR00875 YP_506637.1 identified by similarity to PIR:S29042; match to protein family HMM PF02823 YP_506638.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_506641.1 identified by similarity to GB:AAM00400.1 YP_506643.1 identified by similarity to SP:P17792 YP_506645.1 identified by similarity to SP:P17792 YP_506646.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_506648.1 class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine YP_506652.1 identified by similarity to SP:P12282; match to protein family HMM PF00899; match to protein family HMM PF05237 YP_506654.1 identified by match to protein family HMM PF00070; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_506656.1 identified by similarity to SP:P30053; match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442 YP_506657.1 identified by match to protein family HMM PF01722 YP_506658.1 identified by match to protein family HMM PF00083 YP_506659.1 identified by similarity to GB:AAM22228.1; match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_506660.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579 YP_506665.1 identified by similarity to SP:P54225; match to protein family HMM PF00762; match to protein family HMM TIGR00109 YP_506667.1 identified by similarity to SP:P02378; match to protein family HMM PF01649; match to protein family HMM TIGR00029 YP_506668.1 identified by similarity to SP:Q59654; match to protein family HMM PF00215; match to protein family HMM TIGR01740 YP_506669.1 identified by match to protein family HMM PF03741 YP_506671.1 identified by similarity to SP:P05166; match to protein family HMM PF01039 YP_506673.1 identified by match to protein family HMM PF02321 YP_506674.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_506677.1 identified by similarity to SP:Q9R9N5; match to protein family HMM PF00676 YP_506679.1 identified by match to protein family HMM PF01040 YP_506680.1 identified by match to protein family HMM PF01613 YP_506681.1 identified by match to protein family HMM PF00005 YP_506683.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_506684.1 identified by similarity to SP:P12042; match to protein family HMM PF00586; match to protein family HMM PF02769 YP_506687.1 identified by similarity to GB:AAL66189.1; match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786 YP_506688.1 identified by similarity to SP:P08330; match to protein family HMM PF00156; match to protein family HMM TIGR01251 YP_506689.1 identified by match to protein family HMM PF01106 YP_506690.1 identified by match to protein family HMM PF00226 YP_506692.1 Catalyzes the transfer of electrons from NADH to quinone YP_506693.1 identified by similarity to SP:P54382; match to protein family HMM PF00763; match to protein family HMM PF02882 YP_506695.1 identified by match to protein family HMM PF00149 YP_506696.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine YP_506697.1 identified by match to protein family HMM TIGR00030 YP_506698.1 identified by similarity to SP:P33928 YP_506699.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521 YP_506702.1 identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01574 YP_506707.1 identified by match to protein family HMM PF00380 YP_506708.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_506709.1 identified by match to protein family HMM PF02674 YP_506710.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR02123 YP_506711.1 identified by similarity to SP:P09157; match to protein family HMM PF00081; match to protein family HMM PF02777 YP_506712.1 identified by match to protein family HMM PF00814 YP_506713.1 identified by match to protein family HMM PF05525 YP_506714.1 identified by match to protein family HMM PF07690 YP_506715.1 identified by match to protein family HMM PF00924 YP_506716.1 identified by match to protein family HMM PF00596 YP_506717.1 DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_506718.1 identified by match to protein family HMM PF00160 YP_506719.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_506720.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_506721.1 identified by similarity to SP:P37149; match to protein family HMM PF01790; match to protein family HMM TIGR00544 YP_506722.1 identified by match to protein family HMM PF02628 YP_506723.1 identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030 YP_506724.1 identified by similarity to SP:P25814; match to protein family HMM TIGR00188 YP_506725.1 identified by similarity to GB:AAO78334.1; match to protein family HMM PF01809 YP_506726.1 identified by similarity to GB:AAM00403.1; match to protein family HMM PF04610 YP_506727.1 identified by match to protein family HMM PF04610 YP_506728.1 identified by match to protein family HMM PF04610 YP_506729.1 identified by similarity to GB:AAM00403.1; match to protein family HMM PF04610 YP_506730.1 identified by similarity to GB:AAM00400.1; match to protein family HMM PF03135; match to protein family HMM TIGR00929 YP_506731.1 identified by similarity to GB:AAM00402.1; match to protein family HMM PF05101 YP_506732.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_506733.1 identified by match to protein family HMM PF01734 YP_506738.1 identified by match to protein family HMM PF00561 YP_506742.1 identified by similarity to GB:AAC46296.1; match to protein family HMM PF01617 YP_506743.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_506744.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_506746.1 identified by similarity to GB:AAS13983.1 YP_506747.1 identified by match to protein family HMM PF02545 YP_506748.1 identified by similarity to SP:P02998; match to protein family HMM TIGR00008 YP_506750.1 identified by similarity to GB:CAD84691.1 YP_506751.1 identified by similarity to SP:P03819; match to protein family HMM PF00999; match to protein family HMM PF02254; match to protein family HMM TIGR00932 YP_506753.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_506754.1 identified by similarity to SP:P21590; match to protein family HMM PF01656 YP_506755.1 identified by similarity to SP:P07176 YP_506756.1 identified by similarity to PIR:H97738 YP_506757.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_506758.1 identified by similarity to GB:BAB47692.1 YP_506759.1 identified by similarity to SP:O05593; match to protein family HMM PF00133; match to protein family HMM TIGR00398 YP_506760.1 identified by similarity to SP:P00274; match to protein family HMM PF00085 YP_506761.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_506762.1 identified by match to protein family HMM PF01746; match to protein family HMM TIGR00088 YP_506763.1 involved in the peptidyltransferase reaction during translation YP_506764.1 identified by similarity to SP:P02422; match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_506765.1 identified by similarity to SP:P24277; match to protein family HMM PF01751; match to protein family HMM TIGR00615 YP_506766.1 identified by similarity to PIR:H97456 YP_506767.1 identified by similarity to GB:AAM22615.1; match to protein family HMM PF01323 YP_506770.1 identified by similarity to GB:AAC31427.1 YP_506773.1 identified by similarity to GB:AAC31427.1 YP_506775.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_506777.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_506778.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_506779.1 identified by match to protein family HMM PF01252; match to protein family HMM TIGR00077 YP_506780.1 identified by similarity to SP:P42663 YP_506782.1 identified by similarity to SP:P05797; match to protein family HMM PF00035; match to protein family HMM PF00636; match to protein family HMM TIGR02191 YP_506783.1 identified by match to protein family HMM PF02410 YP_506785.1 identified by similarity to SP:P18595; match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_506786.1 identified by similarity to SP:P32049; match to protein family HMM PF02390 YP_506787.1 identified by similarity to SP:Q50985 YP_506788.1 identified by similarity to SP:P15640; match to protein family HMM PF01071; match to protein family HMM PF02842; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877 YP_506791.1 identified by similarity to GB:AAS14072.1 YP_506793.1 identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674 YP_506796.1 identified by match to protein family HMM PF01292 YP_506798.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_506799.1 identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758 YP_506800.1 identified by similarity to SP:P43262 YP_506801.1 identified by similarity to PIR:E71718 YP_506802.1 identified by similarity to GB:AAS14408.1 YP_506803.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843 YP_506804.1 identified by similarity to SP:P94527 YP_506805.1 identified by similarity to PIR:D97574; match to protein family HMM PF03937 YP_506806.1 identified by similarity to SP:O31752; match to protein family HMM PF01148 YP_506808.1 identified by similarity to SP:O82827; match to protein family HMM PF01255; match to protein family HMM TIGR00055 YP_506809.1 identified by similarity to SP:P16174; match to protein family HMM PF01765; match to protein family HMM TIGR00496 YP_506810.1 identified by match to protein family HMM PF00696; match to protein family HMM TIGR02075 YP_506811.1 identified by similarity to SP:P80700; match to protein family HMM PF00627; match to protein family HMM PF00889; match to protein family HMM TIGR00116 YP_506812.1 identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011 YP_506814.1 identified by match to protein family HMM PF01209; match to protein family HMM TIGR01934 YP_506817.1 identified by similarity to SP:Q9R9N3; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01349 YP_506819.1 identified by match to protein family HMM PF02075 YP_506820.1 identified by similarity to SP:P49814; match to protein family HMM PF00056; match to protein family HMM PF02866 YP_506821.1 identified by match to protein family HMM PF00692; match to protein family HMM TIGR00576 YP_506822.1 identified by similarity to SP:P09097; match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063 YP_506823.1 identified by match to protein family HMM PF01926; match to protein family HMM PF07650; match to protein family HMM TIGR00231; match to protein family HMM TIGR00436 YP_506824.1 identified by similarity to SP:P71019; match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_506825.1 identified by similarity to SP:P02923; match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM TIGR01391 YP_506826.1 identified by similarity to SP:P24224; match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556 YP_506828.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_506829.1 identified by similarity to SP:P12045; match to protein family HMM PF02222; match to protein family HMM TIGR01161 YP_506830.1 identified by similarity to GB:BAB54269.1 YP_506831.1 identified by match to protein family HMM TIGR01630 YP_506832.1 identified by similarity to SP:P42503; match to protein family HMM PF01208; match to protein family HMM TIGR01464 YP_506833.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_506834.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01510 YP_506835.1 identified by similarity to GB:AAS14837.1