-- dump date 20111121_013510 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 222891000001 SEQ_END SEQ_END NC_007798.1 859006 859006 DR NC_007798.1; contig end 859006..859006 Neorickettsia sennetsu str. Miyayama YP_505904.1 CDS NSE_0001 NC_007798.1 4 774 D identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; ParB family chromosome partitioning protein 4..774 Neorickettsia sennetsu str. Miyayama 3932296 YP_505905.1 CDS NSE_0002 NC_007798.1 840 2213 D hypothetical protein 840..2213 Neorickettsia sennetsu str. Miyayama 3931348 YP_505906.1 CDS NSE_0003 NC_007798.1 2237 3580 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase complement(2237..3580) Neorickettsia sennetsu str. Miyayama 3931729 YP_505907.1 CDS NSE_0004 NC_007798.1 3639 4886 D hypothetical protein 3639..4886 Neorickettsia sennetsu str. Miyayama 3932223 YP_505908.1 CDS NSE_0005 NC_007798.1 4930 5937 R identified by similarity to GB:AAD03802.1; match to protein family HMM PF01547; iron-binding protein complement(4930..5937) Neorickettsia sennetsu str. Miyayama 3931701 YP_505909.1 CDS NSE_0006 NC_007798.1 5975 6454 R identified by similarity to GB:AAS13897.1; match to protein family HMM PF03652; hypothetical protein complement(5975..6454) Neorickettsia sennetsu str. Miyayama 3931564 YP_505910.1 CDS NSE_0007 NC_007798.1 6618 7808 D identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537; HK97 family phage portal protein 6618..7808 Neorickettsia sennetsu str. Miyayama 3931856 YP_505911.1 CDS NSE_0008 NC_007798.1 7908 8162 R hypothetical protein complement(7908..8162) Neorickettsia sennetsu str. Miyayama 3932185 YP_505912.1 CDS pgsA NC_007798.1 8215 8763 R identified by similarity to SP:P06978; match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(8215..8763) Neorickettsia sennetsu str. Miyayama 3932194 YP_505913.1 CDS nuoJ NC_007798.1 8977 9546 D identified by similarity to SP:P29922; match to protein family HMM PF00499; NADH dehydrogenase I subunit J 8977..9546 Neorickettsia sennetsu str. Miyayama 3931523 YP_505914.1 CDS NSE_0011 NC_007798.1 9591 9686 D hypothetical protein 9591..9686 Neorickettsia sennetsu str. Miyayama 3931600 YP_505915.1 CDS nuoK NC_007798.1 9774 10073 D identified by similarity to SP:P50940; match to protein family HMM PF00420; NADH dehydrogenase I subunit K 9774..10073 Neorickettsia sennetsu str. Miyayama 3931381 YP_505916.1 CDS NSE_0013 NC_007798.1 10242 10412 R hypothetical protein complement(10242..10412) Neorickettsia sennetsu str. Miyayama 3931789 YP_505917.1 CDS nuoL NC_007798.1 10355 12322 D identified by similarity to SP:P50939; match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974; NADH dehydrogenase I subunit L 10355..12322 Neorickettsia sennetsu str. Miyayama 3931770 YP_505918.1 CDS NSE_0015 NC_007798.1 12467 13072 D identified by match to protein family HMM PF00023; ankyrin repeat-containing protein 12467..13072 Neorickettsia sennetsu str. Miyayama 3932256 YP_505919.1 CDS tgt NC_007798.1 13098 14306 R identified by similarity to SP:P28720; match to protein family HMM PF01702; match to protein family HMM TIGR00430; match to protein family HMM TIGR00449; queuine tRNA-ribosyltransferase complement(13098..14306) Neorickettsia sennetsu str. Miyayama 3931478 YP_505920.1 CDS NSE_0017 NC_007798.1 14560 14703 D hypothetical protein 14560..14703 Neorickettsia sennetsu str. Miyayama 3931567 YP_505921.1 CDS NSE_0018 NC_007798.1 14945 15052 R hypothetical protein complement(14945..15052) Neorickettsia sennetsu str. Miyayama 3931588 YP_505922.1 CDS dnaK NC_007798.1 15164 17074 R identified by similarity to SP:P04475; match to protein family HMM PF00012; match to protein family HMM TIGR02350; chaperone protein DnaK complement(15164..17074) Neorickettsia sennetsu str. Miyayama 3932250 YP_505923.1 CDS truA NC_007798.1 17293 18024 D identified by match to protein family HMM PF01416; match to protein family HMM TIGR00071; tRNA pseudouridine synthase A 17293..18024 Neorickettsia sennetsu str. Miyayama 3932291 YP_505924.1 CDS NSE_0021 NC_007798.1 18111 18368 D hypothetical protein 18111..18368 Neorickettsia sennetsu str. Miyayama 3931537 YP_505925.1 CDS NSE_0022 NC_007798.1 18539 18694 D hypothetical protein 18539..18694 Neorickettsia sennetsu str. Miyayama 3931696 YP_505926.1 CDS NSE_0023 NC_007798.1 18761 21073 D hypothetical protein 18761..21073 Neorickettsia sennetsu str. Miyayama 3931447 YP_505927.1 CDS NSE_0024 NC_007798.1 21361 21459 D hypothetical protein 21361..21459 Neorickettsia sennetsu str. Miyayama 3932230 YP_505928.1 CDS NSE_0025 NC_007798.1 21688 22308 R hypothetical protein complement(21688..22308) Neorickettsia sennetsu str. Miyayama 3931344 YP_505929.1 CDS NSE_0026 NC_007798.1 22386 22481 R hypothetical protein complement(22386..22481) Neorickettsia sennetsu str. Miyayama 3931538 YP_505930.1 CDS NSE_0027 NC_007798.1 22538 23332 R hypothetical protein complement(22538..23332) Neorickettsia sennetsu str. Miyayama 3932139 YP_505931.1 CDS NSE_0028 NC_007798.1 23916 24077 D hypothetical protein 23916..24077 Neorickettsia sennetsu str. Miyayama 3931633 YP_505932.1 CDS NSE_0029 NC_007798.1 24139 24783 R identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697; hypothetical protein complement(24139..24783) Neorickettsia sennetsu str. Miyayama 3931754 YP_505933.1 CDS NSE_0030 NC_007798.1 24806 24934 R hypothetical protein complement(24806..24934) Neorickettsia sennetsu str. Miyayama 3931387 YP_505934.1 CDS purM NC_007798.1 25144 26112 R identified by similarity to SP:P43848; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00878; phosphoribosylformylglycinamidine cyclo-ligase complement(25144..26112) Neorickettsia sennetsu str. Miyayama 3931933 YP_505935.1 CDS mrpC NC_007798.1 26323 26649 R identified by similarity to SP:O05260; match to protein family HMM PF00420; Na(+)/H(+) antiporter subunit C complement(26323..26649) Neorickettsia sennetsu str. Miyayama 3931982 YP_505936.1 CDS NSE_0033 NC_007798.1 26665 26796 D hypothetical protein 26665..26796 Neorickettsia sennetsu str. Miyayama 3931668 YP_505937.1 CDS NSE_0035 NC_007798.1 27859 28134 R monovalent cation/proton antiporter, MnhG/PhaG subunit complement(27859..28134) Neorickettsia sennetsu str. Miyayama 3932015 YP_505938.1 CDS NSE_0036 NC_007798.1 28338 29021 R identified by similarity to GB:AAS14858.1; match to protein family HMM PF04452; match to protein family HMM TIGR00046; hypothetical protein complement(28338..29021) Neorickettsia sennetsu str. Miyayama 3932030 YP_505939.1 CDS NSE_0037 NC_007798.1 29092 29208 R hypothetical protein complement(29092..29208) Neorickettsia sennetsu str. Miyayama 3932053 YP_505940.1 CDS NSE_0038 NC_007798.1 29541 29843 D identified by similarity to GB:AAS14602.1; hypothetical protein 29541..29843 Neorickettsia sennetsu str. Miyayama 3932121 YP_505941.1 CDS rpoZ NC_007798.1 29895 30281 D identified by similarity to SP:P08374; match to protein family HMM TIGR00690; DNA-directed RNA polymerase subunit omega 29895..30281 Neorickettsia sennetsu str. Miyayama 3931676 YP_505942.1 CDS ribF NC_007798.1 30303 31214 D identified by similarity to SP:P54575; match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; riboflavin biosynthesis protein RibF 30303..31214 Neorickettsia sennetsu str. Miyayama 3931626 YP_505943.1 CDS NSE_0041 NC_007798.1 31400 32296 D hypothetical protein 31400..32296 Neorickettsia sennetsu str. Miyayama 3932267 YP_505944.1 CDS NSE_0042 NC_007798.1 32301 34034 R identified by match to protein family HMM PF00005; match to protein family HMM TIGR01842; type I secretion system ATPase complement(32301..34034) Neorickettsia sennetsu str. Miyayama 3931946 YP_505945.1 CDS fabI NC_007798.1 34305 35102 D identified by similarity to SP:Q05069; enoyl-(acyl-carrier-protein) reductase 34305..35102 Neorickettsia sennetsu str. Miyayama 3931762 YP_505946.1 CDS thiS NC_007798.1 35160 35378 R identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683; thiamine biosynthesis protein ThiS complement(35160..35378) Neorickettsia sennetsu str. Miyayama 3931576 YP_505947.1 CDS NSE_0045 NC_007798.1 35405 35962 R hexapeptide transferase family protein complement(35405..35962) Neorickettsia sennetsu str. Miyayama 3931852 YP_505948.1 CDS sdhC NC_007798.1 37788 38210 D identified by similarity to SP:P10446; match to protein family HMM PF01127; succinate dehydrogenase, cytochrome b556 subunit 37788..38210 Neorickettsia sennetsu str. Miyayama 3932111 YP_505949.1 CDS NSE_0048 NC_007798.1 38207 38536 D identified by similarity to GB:AAC17941.1; putative succinate dehydrogenase, hydrophobic membrane anchor protein 38207..38536 Neorickettsia sennetsu str. Miyayama 3931807 YP_505950.1 CDS argS NC_007798.1 38541 40253 D identified by similarity to SP:P35868; match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456; arginyl-tRNA synthetase 38541..40253 Neorickettsia sennetsu str. Miyayama 3931760 YP_505951.1 CDS NSE_0050 NC_007798.1 40371 41126 R identified by match to protein family HMM PF01027; hypothetical protein complement(40371..41126) Neorickettsia sennetsu str. Miyayama 3931386 YP_505952.1 CDS NSE_0051 NC_007798.1 41241 43679 R hypothetical protein complement(41241..43679) Neorickettsia sennetsu str. Miyayama 3931430 YP_505953.1 CDS NSE_0052 NC_007798.1 43984 44202 D identified by similarity to GB:AAS13913.1; hypothetical protein 43984..44202 Neorickettsia sennetsu str. Miyayama 3932286 YP_505954.1 CDS nuoG NC_007798.1 44209 46248 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 44209..46248 Neorickettsia sennetsu str. Miyayama 3931947 YP_505955.1 CDS nuoH NC_007798.1 46226 47236 D identified by match to protein family HMM PF00146; NADH dehydrogenase I subunit H 46226..47236 Neorickettsia sennetsu str. Miyayama 3931707 YP_505956.1 CDS NSE_0055 NC_007798.1 47265 47924 D identified by similarity to SP:P27291; match to protein family HMM PF04972; putative osmotically inducible protein 47265..47924 Neorickettsia sennetsu str. Miyayama 3931980 YP_505957.2 CDS fumC NC_007798.1 48009 49421 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(48009..49421) Neorickettsia sennetsu str. Miyayama 3932165 YP_505958.1 CDS pnp NC_007798.1 49726 51999 R identified by similarity to SP:P05055; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase/polyadenylase complement(49726..51999) Neorickettsia sennetsu str. Miyayama 3931805 YP_505959.1 CDS rpsO NC_007798.1 52003 52263 R identified by similarity to SP:P05766; match to protein family HMM PF00312; match to protein family HMM TIGR00952; 30S ribosomal protein S15 complement(52003..52263) Neorickettsia sennetsu str. Miyayama 3932204 YP_505960.1 CDS purB NC_007798.1 52474 53772 R identified by similarity to SP:P12047; match to protein family HMM PF00206; match to protein family HMM TIGR00928; adenylosuccinate lyase complement(52474..53772) Neorickettsia sennetsu str. Miyayama 3932290 YP_505961.1 CDS rplI NC_007798.1 53784 54266 R identified by similarity to SP:P02418; match to protein family HMM PF01281; match to protein family HMM PF03948; match to protein family HMM TIGR00158; 50S ribosomal protein L9 complement(53784..54266) Neorickettsia sennetsu str. Miyayama 3931413 YP_505962.1 CDS rpsR NC_007798.1 54279 54500 R identified by similarity to SP:P02374; match to protein family HMM PF01084; match to protein family HMM TIGR00165; 30S ribosomal protein S18 complement(54279..54500) Neorickettsia sennetsu str. Miyayama 3932134 YP_505963.1 CDS rpsF NC_007798.1 54545 54889 R identified by similarity to SP:P02358; match to protein family HMM PF01250; match to protein family HMM TIGR00166; 30S ribosomal protein S6 complement(54545..54889) Neorickettsia sennetsu str. Miyayama 3931902 YP_505964.1 CDS NSE_0063 NC_007798.1 55094 56110 D putative phosphate ABC transporter periplasmic phosphate-binding protein 55094..56110 Neorickettsia sennetsu str. Miyayama 3932246 YP_505965.1 CDS NSE_0064 NC_007798.1 56119 57312 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710; Bcr/CflA subfamily drug resistance transporter 56119..57312 Neorickettsia sennetsu str. Miyayama 3931833 YP_505966.1 CDS NSE_0065 NC_007798.1 57339 58232 R identified by match to protein family HMM PF00892; hypothetical protein complement(57339..58232) Neorickettsia sennetsu str. Miyayama 3932026 YP_505967.1 CDS NSE_0066 NC_007798.1 58542 59210 D putative lipoprotein 58542..59210 Neorickettsia sennetsu str. Miyayama 3931493 YP_505968.1 CDS rho NC_007798.1 59313 60632 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(59313..60632) Neorickettsia sennetsu str. Miyayama 3931868 YP_505969.1 CDS NSE_0068 NC_007798.1 61185 62690 D identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368; Mg chelatase-like protein 61185..62690 Neorickettsia sennetsu str. Miyayama 3931609 YP_505970.1 CDS NSE_0069 NC_007798.1 62874 63071 D hypothetical protein 62874..63071 Neorickettsia sennetsu str. Miyayama 3932099 YP_505971.1 CDS NSE_0070 NC_007798.1 63096 63563 D hypothetical protein 63096..63563 Neorickettsia sennetsu str. Miyayama 3931991 YP_505972.1 CDS NSE_0071 NC_007798.1 63633 63851 D hypothetical protein 63633..63851 Neorickettsia sennetsu str. Miyayama 3931674 YP_505973.1 CDS NSE_0072 NC_007798.1 64070 64426 D hypothetical protein 64070..64426 Neorickettsia sennetsu str. Miyayama 3931526 YP_505974.1 CDS NSE_0073 NC_007798.1 64865 65707 D hypothetical protein 64865..65707 Neorickettsia sennetsu str. Miyayama 3931903 YP_505975.1 CDS NSE_0074 NC_007798.1 65872 66039 R hypothetical protein complement(65872..66039) Neorickettsia sennetsu str. Miyayama 3931606 YP_505976.1 CDS NSE_0075 NC_007798.1 66207 66332 D hypothetical protein 66207..66332 Neorickettsia sennetsu str. Miyayama 3932069 YP_505977.1 CDS NSE_0076 NC_007798.1 66473 66592 D hypothetical protein 66473..66592 Neorickettsia sennetsu str. Miyayama 3931704 YP_505978.1 CDS NSE_0077 NC_007798.1 67058 67300 D identified by similarity to GB:BAC12908.1; hypothetical protein 67058..67300 Neorickettsia sennetsu str. Miyayama 3932173 YP_505979.1 CDS NSE_0078 NC_007798.1 67388 68098 R hypothetical protein complement(67388..68098) Neorickettsia sennetsu str. Miyayama 3932242 YP_505980.1 CDS NSE_0079 NC_007798.1 68525 68680 R hypothetical protein complement(68525..68680) Neorickettsia sennetsu str. Miyayama 3931802 YP_505981.1 CDS NSE_0080 NC_007798.1 68745 69407 R hypothetical protein complement(68745..69407) Neorickettsia sennetsu str. Miyayama 3932297 YP_505982.1 CDS NSE_0081 NC_007798.1 69139 69459 D hypothetical protein 69139..69459 Neorickettsia sennetsu str. Miyayama 3931709 YP_505983.1 CDS NSE_0082 NC_007798.1 69894 70040 R hypothetical protein complement(69894..70040) Neorickettsia sennetsu str. Miyayama 3931497 YP_505984.1 CDS NSE_0083 NC_007798.1 70325 71089 R hypothetical protein complement(70325..71089) Neorickettsia sennetsu str. Miyayama 3931502 YP_505985.1 CDS gatB NC_007798.1 72068 73534 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 72068..73534 Neorickettsia sennetsu str. Miyayama 3932268 YP_505986.1 CDS NSE_0085 NC_007798.1 73527 73961 D identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase family protein 73527..73961 Neorickettsia sennetsu str. Miyayama 3931898 YP_505987.1 CDS NSE_0086 NC_007798.1 74394 74660 R hypothetical protein complement(74394..74660) Neorickettsia sennetsu str. Miyayama 3932070 YP_505988.1 CDS NSE_0087 NC_007798.1 74886 75071 D identified by similarity to GB:AAL93909.1; hypothetical protein 74886..75071 Neorickettsia sennetsu str. Miyayama 3931380 YP_505989.1 CDS NSE_0088 NC_007798.1 75251 75754 D hypothetical protein 75251..75754 Neorickettsia sennetsu str. Miyayama 3931890 YP_505990.1 CDS NSE_0089 NC_007798.1 75827 75967 D hypothetical protein 75827..75967 Neorickettsia sennetsu str. Miyayama 3931559 YP_505991.1 CDS NSE_0090 NC_007798.1 76215 76706 D hypothetical protein 76215..76706 Neorickettsia sennetsu str. Miyayama 3931777 YP_505992.1 CDS NSE_0091 NC_007798.1 76795 76935 D hypothetical protein 76795..76935 Neorickettsia sennetsu str. Miyayama 3931401 YP_505993.1 CDS NSE_0092 NC_007798.1 77129 77680 D hypothetical protein 77129..77680 Neorickettsia sennetsu str. Miyayama 3932288 YP_505994.1 CDS NSE_0093 NC_007798.1 77709 77828 R hypothetical protein complement(77709..77828) Neorickettsia sennetsu str. Miyayama 3931481 YP_505995.1 CDS fmt NC_007798.1 78013 78936 R identified by similarity to SP:P23882; match to protein family HMM PF00551; match to protein family HMM TIGR00460; methionyl-tRNA formyltransferase complement(78013..78936) Neorickettsia sennetsu str. Miyayama 3932304 YP_505996.1 CDS NSE_0096 NC_007798.1 79128 79232 D hypothetical protein 79128..79232 Neorickettsia sennetsu str. Miyayama 3931394 YP_505997.1 CDS nadE NC_007798.1 79285 80091 R identified by match to protein family HMM PF02540; match to protein family HMM TIGR00552; NAD+ synthetase complement(79285..80091) Neorickettsia sennetsu str. Miyayama 3931995 YP_505998.1 CDS NSE_0098 NC_007798.1 80101 80190 D hypothetical protein 80101..80190 Neorickettsia sennetsu str. Miyayama 3931839 YP_505999.1 CDS NSE_0099 NC_007798.1 80170 80379 R hypothetical protein complement(80170..80379) Neorickettsia sennetsu str. Miyayama 3931416 YP_506000.1 CDS lipB NC_007798.1 80625 81254 D identified by match to protein family HMM PF03099; match to protein family HMM TIGR00214; lipoate-protein ligase B 80625..81254 Neorickettsia sennetsu str. Miyayama 3931621 YP_506001.1 CDS truB NC_007798.1 81266 81973 D identified by match to protein family HMM PF01509; match to protein family HMM TIGR00431; tRNA pseudouridine synthase B 81266..81973 Neorickettsia sennetsu str. Miyayama 3931563 YP_506002.1 CDS NSE_0102 NC_007798.1 82049 82222 D hypothetical protein 82049..82222 Neorickettsia sennetsu str. Miyayama 3931341 YP_506003.1 CDS NSE_0103 NC_007798.1 82339 82587 D hypothetical protein 82339..82587 Neorickettsia sennetsu str. Miyayama 3931994 YP_506004.1 CDS NSE_0104 NC_007798.1 82597 83676 D hypothetical protein 82597..83676 Neorickettsia sennetsu str. Miyayama 3931618 YP_506005.1 CDS NSE_0105 NC_007798.1 83760 83951 D hypothetical protein 83760..83951 Neorickettsia sennetsu str. Miyayama 3932136 YP_506006.1 CDS NSE_0106 NC_007798.1 83999 84145 R hypothetical protein complement(83999..84145) Neorickettsia sennetsu str. Miyayama 3931663 YP_506007.1 CDS NSE_0107 NC_007798.1 84763 85689 D hypothetical protein 84763..85689 Neorickettsia sennetsu str. Miyayama 3932160 YP_506008.1 CDS NSE_0108 NC_007798.1 86211 87413 D hypothetical protein 86211..87413 Neorickettsia sennetsu str. Miyayama 3931715 YP_506009.1 CDS NSE_0109 NC_007798.1 87560 87709 D hypothetical protein 87560..87709 Neorickettsia sennetsu str. Miyayama 3931828 YP_506010.1 CDS NSE_0110 NC_007798.1 87850 88089 D hypothetical protein 87850..88089 Neorickettsia sennetsu str. Miyayama 3931943 YP_506011.1 CDS NSE_0111 NC_007798.1 88421 89233 D hypothetical protein 88421..89233 Neorickettsia sennetsu str. Miyayama 3932294 YP_506012.1 CDS NSE_0112 NC_007798.1 89497 90399 D hypothetical protein 89497..90399 Neorickettsia sennetsu str. Miyayama 3932085 YP_506013.1 CDS NSE_0113 NC_007798.1 90713 91501 D hypothetical protein 90713..91501 Neorickettsia sennetsu str. Miyayama 3931342 YP_506014.1 CDS NSE_0114 NC_007798.1 92049 92297 R hypothetical protein complement(92049..92297) Neorickettsia sennetsu str. Miyayama 3932052 YP_506015.1 CDS NSE_0115 NC_007798.1 92233 92964 D hypothetical protein 92233..92964 Neorickettsia sennetsu str. Miyayama 3931844 YP_506016.1 CDS NSE_0116 NC_007798.1 93109 93249 R hypothetical protein complement(93109..93249) Neorickettsia sennetsu str. Miyayama 3931503 YP_506017.1 CDS NSE_0117 NC_007798.1 93292 94203 D hypothetical protein 93292..94203 Neorickettsia sennetsu str. Miyayama 3931847 YP_506018.1 CDS NSE_0118 NC_007798.1 94290 94442 D hypothetical protein 94290..94442 Neorickettsia sennetsu str. Miyayama 3931819 YP_506019.1 CDS clpB NC_007798.1 94667 97231 R identified by similarity to SP:P03815; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; ClpB protein complement(94667..97231) Neorickettsia sennetsu str. Miyayama 3931955 YP_506020.1 CDS NSE_0120 NC_007798.1 97557 99206 D identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757; ribonuclease 97557..99206 Neorickettsia sennetsu str. Miyayama 3932137 YP_506021.1 CDS NSE_0121 NC_007798.1 99201 100451 R hypothetical protein complement(99201..100451) Neorickettsia sennetsu str. Miyayama 3931632 YP_506022.1 CDS nadC NC_007798.1 100662 101522 D identified by similarity to SP:O06594; match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; nicotinate-nucleotide pyrophosphorylase 100662..101522 Neorickettsia sennetsu str. Miyayama 3932240 YP_506023.1 CDS rpsP NC_007798.1 101663 101920 D identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; 30S ribosomal protein S16 101663..101920 Neorickettsia sennetsu str. Miyayama 3932034 YP_506024.1 CDS NSE_0124 NC_007798.1 101917 102408 D identified by similarity to GB:CAE25687.1; match to protein family HMM PF05239; match to protein family HMM TIGR02273; putative 16S rRNA processing protein RimM 101917..102408 Neorickettsia sennetsu str. Miyayama 3931756 YP_506025.1 CDS NSE_0125 NC_007798.1 102414 103640 D identified by match to protein family HMM PF02646; RmuC domain-containing protein 102414..103640 Neorickettsia sennetsu str. Miyayama 3931836 YP_506026.1 CDS NSE_0126 NC_007798.1 103662 104450 R identified by similarity to GB:AAS13843.1; hypothetical protein complement(103662..104450) Neorickettsia sennetsu str. Miyayama 3932126 YP_506027.1 CDS tatC NC_007798.1 104694 105485 D identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945; Sec-independent protein translocase TatC 104694..105485 Neorickettsia sennetsu str. Miyayama 3931984 YP_506028.1 CDS NSE_0128 NC_007798.1 105557 106426 D identified by match to protein family HMM TIGR00536; HemK family modification methylase 105557..106426 Neorickettsia sennetsu str. Miyayama 3932309 YP_506029.1 CDS NSE_0129 NC_007798.1 106580 106714 D hypothetical protein 106580..106714 Neorickettsia sennetsu str. Miyayama 3932212 YP_506030.1 CDS NSE_0130 NC_007798.1 106757 107053 D hypothetical protein 106757..107053 Neorickettsia sennetsu str. Miyayama 3931553 YP_506031.1 CDS atpA NC_007798.1 107976 109505 R identified by similarity to SP:P05036; match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM TIGR00962; ATP synthase F1 subunit alpha complement(107976..109505) Neorickettsia sennetsu str. Miyayama 3932148 YP_506032.1 CDS atpH NC_007798.1 109516 110040 R identified by match to protein family HMM PF00213; ATP synthase F1 subunit delta complement(109516..110040) Neorickettsia sennetsu str. Miyayama 3931678 YP_506033.1 CDS NSE_0133 NC_007798.1 110123 110704 R identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; 5,10-methenyltetrahydrofolate synthetase complement(110123..110704) Neorickettsia sennetsu str. Miyayama 3931351 YP_506034.1 CDS ispF NC_007798.1 110751 111257 R identified by match to protein family HMM PF02542; match to protein family HMM TIGR00151; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(110751..111257) Neorickettsia sennetsu str. Miyayama 3931795 YP_506035.1 CDS NSE_0135 NC_007798.1 111277 111384 R hypothetical protein complement(111277..111384) Neorickettsia sennetsu str. Miyayama 3931604 YP_506036.1 CDS NSE_0137 NC_007798.1 111587 112810 D identified by match to protein family HMM PF02687; match to protein family HMM TIGR02212; putative permease 111587..112810 Neorickettsia sennetsu str. Miyayama 3932228 YP_506037.1 CDS NSE_0138 NC_007798.1 112840 113199 R identified by similarity to SP:P33643; match to protein family HMM PF00849; putative RNA pseudouridylate synthase, truncation complement(112840..113199) Neorickettsia sennetsu str. Miyayama 3931408 YP_506038.1 CDS NSE_0139 NC_007798.1 113279 113458 D hypothetical protein 113279..113458 Neorickettsia sennetsu str. Miyayama 3932021 YP_506039.1 CDS NSE_0140 NC_007798.1 113711 114274 D hypothetical protein 113711..114274 Neorickettsia sennetsu str. Miyayama 3932293 YP_506040.1 CDS NSE_0141 NC_007798.1 114344 114436 D hypothetical protein 114344..114436 Neorickettsia sennetsu str. Miyayama 3931765 YP_506041.1 CDS NSE_0142 NC_007798.1 114546 115502 R catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase complement(114546..115502) Neorickettsia sennetsu str. Miyayama 3931825 YP_506042.1 CDS NSE_0143 NC_007798.1 115592 115747 D hypothetical protein 115592..115747 Neorickettsia sennetsu str. Miyayama 3931484 YP_506043.1 CDS xerD NC_007798.1 115865 116782 D identified by similarity to SP:P21891; match to protein family HMM PF00589; match to protein family HMM PF02899; tyrosine recombinase XerD 115865..116782 Neorickettsia sennetsu str. Miyayama 3931639 YP_506044.1 CDS NSE_0145 NC_007798.1 116994 118001 D hypothetical protein 116994..118001 Neorickettsia sennetsu str. Miyayama 3932159 YP_506045.1 CDS NSE_0146 NC_007798.1 118090 119082 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase A 118090..119082 Neorickettsia sennetsu str. Miyayama 3931949 YP_506046.1 CDS NSE_0147 NC_007798.1 119358 119576 D hypothetical protein 119358..119576 Neorickettsia sennetsu str. Miyayama 3931540 YP_506047.1 CDS NSE_0148 NC_007798.1 119593 119769 D hypothetical protein 119593..119769 Neorickettsia sennetsu str. Miyayama 3931925 YP_506048.1 CDS NSE_0149 NC_007798.1 120306 120440 R hypothetical protein complement(120306..120440) Neorickettsia sennetsu str. Miyayama 3931967 YP_506049.1 CDS NSE_0151 NC_007798.1 120679 121725 D identified by match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 120679..121725 Neorickettsia sennetsu str. Miyayama 3932040 YP_506050.1 CDS NSE_0152 NC_007798.1 121676 121906 D hypothetical protein 121676..121906 Neorickettsia sennetsu str. Miyayama 3932275 YP_506051.1 CDS NSE_0153 NC_007798.1 121791 123128 D identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium:alanine symporter family protein 121791..123128 Neorickettsia sennetsu str. Miyayama 3931924 YP_506052.1 CDS pyrC NC_007798.1 123195 124511 D identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR00857; dihydroorotase, multifunctional complex type 123195..124511 Neorickettsia sennetsu str. Miyayama 3931508 YP_506053.1 CDS NSE_0155 NC_007798.1 124558 124707 D hypothetical protein 124558..124707 Neorickettsia sennetsu str. Miyayama 3932161 YP_506054.1 CDS alaS NC_007798.1 124722 127268 R identified by similarity to SP:P00957; match to protein family HMM PF01411; match to protein family HMM PF07973; match to protein family HMM TIGR00344; alanyl-tRNA synthetase complement(124722..127268) Neorickettsia sennetsu str. Miyayama 3931384 YP_506055.1 CDS NSE_0157 NC_007798.1 127381 127530 R hypothetical protein complement(127381..127530) Neorickettsia sennetsu str. Miyayama 3931830 YP_506056.1 CDS NSE_0158 NC_007798.1 127556 129157 D identified by similarity to SP:P72958; putative transporter 127556..129157 Neorickettsia sennetsu str. Miyayama 3931713 YP_506057.1 CDS NSE_0159 NC_007798.1 129072 129254 R hypothetical protein complement(129072..129254) Neorickettsia sennetsu str. Miyayama 3931667 YP_506058.1 CDS NSE_0161 NC_007798.1 129456 130067 R identified by similarity to SP:P30964; CcmB-like protein complement(129456..130067) Neorickettsia sennetsu str. Miyayama 3931971 YP_506059.1 CDS dksA NC_007798.1 130140 130553 D identified by similarity to SP:P18274; match to protein family HMM PF01258; DnaK suppressor protein 130140..130553 Neorickettsia sennetsu str. Miyayama 3931367 YP_506060.1 CDS thyX NC_007798.1 130622 131500 D flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 130622..131500 Neorickettsia sennetsu str. Miyayama 3931400 YP_506061.1 CDS hflK NC_007798.1 131617 132660 D identified by similarity to SP:P25662; match to protein family HMM PF01145; match to protein family HMM TIGR01933; HflK protein 131617..132660 Neorickettsia sennetsu str. Miyayama 3932180 YP_506062.1 CDS hflC NC_007798.1 132657 133517 D identified by similarity to SP:P25661; match to protein family HMM PF01145; match to protein family HMM TIGR01932; HflC protein 132657..133517 Neorickettsia sennetsu str. Miyayama 3931780 YP_506063.1 CDS NSE_0166 NC_007798.1 133504 134925 D identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; periplasmic serine protease 133504..134925 Neorickettsia sennetsu str. Miyayama 3932058 YP_506064.1 CDS dnaE NC_007798.1 134937 138170 D identified by similarity to SP:P10443; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594; DNA polymerase III subunit alpha 134937..138170 Neorickettsia sennetsu str. Miyayama 3932104 YP_506065.1 CDS NSE_0169 NC_007798.1 138386 139495 R identified by match to protein family HMM PF01713; Smr domain-containing protein complement(138386..139495) Neorickettsia sennetsu str. Miyayama 3931983 YP_506066.1 CDS dnaN NC_007798.1 139761 140879 D identified by similarity to SP:P00583; match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663; DNA polymerase III subunit beta 139761..140879 Neorickettsia sennetsu str. Miyayama 3931522 YP_506067.1 CDS NSE_0172 NC_007798.1 141195 142610 R catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase complement(141195..142610) Neorickettsia sennetsu str. Miyayama 3931423 YP_506068.1 CDS NSE_0173 NC_007798.1 142696 143610 D identified by match to protein family HMM PF03547; putative transporter 142696..143610 Neorickettsia sennetsu str. Miyayama 3932097 YP_506069.1 CDS NSE_0174 NC_007798.1 143828 143965 R hypothetical protein complement(143828..143965) Neorickettsia sennetsu str. Miyayama 3931665 YP_506070.1 CDS NSE_0175 NC_007798.1 143960 145231 D identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 143960..145231 Neorickettsia sennetsu str. Miyayama 3931930 YP_506071.1 CDS hslV NC_007798.1 145277 145843 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 145277..145843 Neorickettsia sennetsu str. Miyayama 3931981 YP_506072.1 CDS hslU NC_007798.1 145864 147282 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 145864..147282 Neorickettsia sennetsu str. Miyayama 3931406 YP_506073.1 CDS NSE_0178 NC_007798.1 147285 147983 D identified by match to protein family HMM PF01128; putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 147285..147983 Neorickettsia sennetsu str. Miyayama 3932002 YP_506074.1 CDS pyrD NC_007798.1 148110 149156 D identified by match to protein family HMM PF01180; match to protein family HMM TIGR01036; dihydroorotate dehydrogenase 148110..149156 Neorickettsia sennetsu str. Miyayama 3932024 YP_506075.1 CDS NSE_0180 NC_007798.1 149374 150681 R identified by similarity to SP:P20691; match to protein family HMM PF00275; putative 3-phosphoshikimate 1-carboxyvinyltransferase complement(149374..150681) Neorickettsia sennetsu str. Miyayama 3931582 YP_506076.1 CDS NSE_0181 NC_007798.1 150943 153774 R hypothetical protein complement(150943..153774) Neorickettsia sennetsu str. Miyayama 3932184 YP_506077.1 CDS NSE_0182 NC_007798.1 153764 153916 R hypothetical protein complement(153764..153916) Neorickettsia sennetsu str. Miyayama 3931483 YP_506078.1 CDS NSE_0183 NC_007798.1 153913 154260 R hypothetical protein complement(153913..154260) Neorickettsia sennetsu str. Miyayama 3931692 YP_506079.1 CDS NSE_0184 NC_007798.1 154343 154555 D hypothetical protein 154343..154555 Neorickettsia sennetsu str. Miyayama 3932132 YP_506080.1 CDS purH NC_007798.1 154794 156266 R identified by similarity to SP:P15639; match to protein family HMM PF01808; match to protein family HMM PF02142; match to protein family HMM TIGR00355; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(154794..156266) Neorickettsia sennetsu str. Miyayama 3931627 YP_506081.1 CDS gshB NC_007798.1 156485 157459 R identified by similarity to SP:P04425; glutathione synthetase complement(156485..157459) Neorickettsia sennetsu str. Miyayama 3931673 YP_506082.1 CDS NSE_0187 NC_007798.1 157785 157961 D hypothetical protein 157785..157961 Neorickettsia sennetsu str. Miyayama 3932209 YP_506083.1 CDS NSE_0188 NC_007798.1 157995 158174 D hypothetical protein 157995..158174 Neorickettsia sennetsu str. Miyayama 3931595 YP_506084.1 CDS NSE_0189 NC_007798.1 158171 159568 D identified by similarity to GB:CAE09398.1; match to protein family HMM PF03060; hypothetical protein 158171..159568 Neorickettsia sennetsu str. Miyayama 3931851 YP_506085.1 CDS NSE_0190 NC_007798.1 159745 160416 R identified by similarity to GB:AAR38359.1; hypothetical protein complement(159745..160416) Neorickettsia sennetsu str. Miyayama 3931528 YP_506086.1 CDS NSE_0191 NC_007798.1 160394 161377 R identified by similarity to SP:P77406; match to protein family HMM PF01594; PerM family permease complement(160394..161377) Neorickettsia sennetsu str. Miyayama 3931956 YP_506087.1 CDS NSE_0192 NC_007798.1 161491 164568 R identified by match to protein family HMM PF00873; AcrB/AcrD/AcrF family transporter complement(161491..164568) Neorickettsia sennetsu str. Miyayama 3932105 YP_506088.1 CDS NSE_0193 NC_007798.1 164597 164830 R hypothetical protein complement(164597..164830) Neorickettsia sennetsu str. Miyayama 3931635 YP_506089.1 CDS purF NC_007798.1 164808 166199 R identified by similarity to SP:P00497; match to protein family HMM PF00156; match to protein family HMM PF00310; match to protein family HMM TIGR01134; amidophosphoribosyltransferase complement(164808..166199) Neorickettsia sennetsu str. Miyayama 3931587 YP_506090.1 CDS NSE_0195 NC_007798.1 166240 166632 R hypothetical protein complement(166240..166632) Neorickettsia sennetsu str. Miyayama 3932244 YP_506091.1 CDS efp NC_007798.1 166629 167204 R identified by match to protein family HMM PF01132; translation elongation factor P complement(166629..167204) Neorickettsia sennetsu str. Miyayama 3932195 YP_506092.1 CDS NSE_0197 NC_007798.1 167307 167705 R putative lipoprotein complement(167307..167705) Neorickettsia sennetsu str. Miyayama 3932150 YP_506093.1 CDS NSE_0198 NC_007798.1 167974 169122 D identified by similarity to GB:AAL95344.1; putative transporter 167974..169122 Neorickettsia sennetsu str. Miyayama 3931495 YP_506094.1 CDS NSE_0199 NC_007798.1 169119 170168 D identified by similarity to SP:P49999; putative DNA replication and repair protein RecF 169119..170168 Neorickettsia sennetsu str. Miyayama 3931616 YP_506095.1 CDS NSE_0200 NC_007798.1 170382 170612 D hypothetical protein 170382..170612 Neorickettsia sennetsu str. Miyayama 3932151 YP_506096.1 CDS NSE_0201 NC_007798.1 170642 171238 D identified by match to protein family HMM PF01170; match to protein family HMM PF03602; match to protein family HMM TIGR00095; putative methyltransferase 170642..171238 Neorickettsia sennetsu str. Miyayama 3931359 YP_506097.1 CDS NSE_0202 NC_007798.1 171372 171632 D identified by match to protein family HMM PF01722; BolA family protein 171372..171632 Neorickettsia sennetsu str. Miyayama 3931622 YP_506098.1 CDS NSE_0203 NC_007798.1 171654 171974 D identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365; glutaredoxin-like protein 171654..171974 Neorickettsia sennetsu str. Miyayama 3931548 YP_506099.1 CDS pstC NC_007798.1 172059 173033 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter permease PstC complement(172059..173033) Neorickettsia sennetsu str. Miyayama 3931857 YP_506100.1 CDS NSE_0205 NC_007798.1 173274 174215 D hypothetical protein 173274..174215 Neorickettsia sennetsu str. Miyayama 3931599 YP_506101.1 CDS priA NC_007798.1 174366 176495 D identified by similarity to SP:P94461; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00595; primosomal protein N' 174366..176495 Neorickettsia sennetsu str. Miyayama 3932065 YP_506102.1 CDS NSE_0207 NC_007798.1 176511 176684 D hypothetical protein 176511..176684 Neorickettsia sennetsu str. Miyayama 3931741 YP_506103.1 CDS NSE_0208 NC_007798.1 176762 177796 D hypothetical protein 176762..177796 Neorickettsia sennetsu str. Miyayama 3931831 YP_506104.1 CDS NSE_0209 NC_007798.1 177802 178398 R identified by match to protein family HMM PF06055; exopolysaccharide synthesis protein complement(177802..178398) Neorickettsia sennetsu str. Miyayama 3931689 YP_506105.1 CDS virB9-1 NC_007798.1 178418 179218 R identified by similarity to GB:AAM00415.1; match to protein family HMM PF03524; type IV secretion system protein VirB9 complement(178418..179218) Neorickettsia sennetsu str. Miyayama 3932149 YP_506106.1 CDS virB8-1 NC_007798.1 179202 179849 R identified by similarity to GB:AAS14504.1; type IV secretion system protein VirB8 complement(179202..179849) Neorickettsia sennetsu str. Miyayama 3931415 YP_506107.1 CDS grpE NC_007798.1 179931 180494 D identified by match to protein family HMM PF01025; co-chaperone GrpE 179931..180494 Neorickettsia sennetsu str. Miyayama 3931456 YP_506108.1 CDS trpS NC_007798.1 180524 181516 D identified by similarity to SP:P00953; match to protein family HMM PF00579; match to protein family HMM TIGR00233; tryptophanyl-tRNA synthetase 180524..181516 Neorickettsia sennetsu str. Miyayama 3931645 YP_506109.1 CDS NSE_0214 NC_007798.1 181579 181785 D 50S ribosomal protein L35 181579..181785 Neorickettsia sennetsu str. Miyayama 3932075 YP_506110.1 CDS rplT NC_007798.1 181799 182152 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 181799..182152 Neorickettsia sennetsu str. Miyayama 3931364 YP_506111.1 CDS pheS NC_007798.1 182149 183126 D identified by similarity to SP:P08312; match to protein family HMM PF01409; match to protein family HMM TIGR00468; phenylalanyl-tRNA synthetase subunit alpha 182149..183126 Neorickettsia sennetsu str. Miyayama 3931544 YP_506112.1 CDS rpiB NC_007798.1 183158 183616 D identified by similarity to SP:P37351; match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120; ribose 5-phosphate isomerase B 183158..183616 Neorickettsia sennetsu str. Miyayama 3932019 YP_506113.1 CDS glyA NC_007798.1 183588 184847 D identified by similarity to SP:P34895; match to protein family HMM PF00155; match to protein family HMM PF00464; match to protein family HMM PF01212; serine hydroxymethyltransferase 183588..184847 Neorickettsia sennetsu str. Miyayama 3932003 YP_506114.1 CDS NSE_0219 NC_007798.1 184859 185128 R hypothetical protein complement(184859..185128) Neorickettsia sennetsu str. Miyayama 3932193 YP_506115.1 CDS NSE_0220 NC_007798.1 185240 185884 D identified by similarity to SP:P71350; match to protein family HMM PF02581; putative thiamine-phosphate pyrophosphorylase 185240..185884 Neorickettsia sennetsu str. Miyayama 3931586 YP_506116.1 CDS NSE_0221 NC_007798.1 185965 186066 D hypothetical protein 185965..186066 Neorickettsia sennetsu str. Miyayama 3931572 YP_506117.1 CDS carB NC_007798.1 186097 189318 D identified by similarity to SP:P38100; match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369; carbamoyl-phosphate synthase large subunit 186097..189318 Neorickettsia sennetsu str. Miyayama 3931728 YP_506118.1 CDS tldD NC_007798.1 189556 190989 D identified by similarity to SP:P46473; match to protein family HMM PF01523; TldD protein 189556..190989 Neorickettsia sennetsu str. Miyayama 3931377 YP_506119.1 CDS purA NC_007798.1 191077 192330 D identified by match to protein family HMM PF00709; adenylosuccinate synthetase 191077..192330 Neorickettsia sennetsu str. Miyayama 3931531 YP_506120.1 CDS NSE_0226 NC_007798.1 192474 193121 D putative phosphatidylglycerophosphatase A 192474..193121 Neorickettsia sennetsu str. Miyayama 3931743 YP_506121.1 CDS NSE_0227 NC_007798.1 193229 193567 R identified by similarity to SP:P33636; match to protein family HMM PF00085; thioredoxin complement(193229..193567) Neorickettsia sennetsu str. Miyayama 3931748 YP_506122.1 CDS gpsA NC_007798.1 193716 194720 R identified by similarity to SP:P46919; match to protein family HMM PF01210; match to protein family HMM PF07479; glycerol-3-phosphate dehydrogenase complement(193716..194720) Neorickettsia sennetsu str. Miyayama 3932274 YP_506123.1 CDS radC NC_007798.1 194766 195476 R identified by similarity to SP:P25531; match to protein family HMM PF04002; match to protein family HMM TIGR00608; DNA repair protein RadC complement(194766..195476) Neorickettsia sennetsu str. Miyayama 3931753 YP_506124.1 CDS NSE_0230 NC_007798.1 195578 196012 R identified by match to protein family HMM PF01381; DNA-binding protein complement(195578..196012) Neorickettsia sennetsu str. Miyayama 3931378 YP_506125.1 CDS NSE_0231 NC_007798.1 196052 196177 R hypothetical protein complement(196052..196177) Neorickettsia sennetsu str. Miyayama 3931737 YP_506126.1 CDS secA NC_007798.1 196288 198702 R identified by match to protein family HMM PF00271; match to protein family HMM PF01043; match to protein family HMM PF07516; match to protein family HMM PF07517; match to protein family HMM TIGR00963; preprotein translocase subunit SecA complement(196288..198702) Neorickettsia sennetsu str. Miyayama 3931784 YP_506127.1 CDS NSE_0233 NC_007798.1 198879 199037 D hypothetical protein 198879..199037 Neorickettsia sennetsu str. Miyayama 3931457 YP_506128.1 CDS NSE_0234 NC_007798.1 199190 199987 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 199190..199987 Neorickettsia sennetsu str. Miyayama 3931730 YP_506129.1 CDS purE NC_007798.1 200085 200564 R identified by similarity to SP:P09028; match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase, catalytic subunit complement(200085..200564) Neorickettsia sennetsu str. Miyayama 3931656 YP_506130.1 CDS NSE_0236 NC_007798.1 200705 201694 R identified by similarity to SP:P36175; match to protein family HMM PF00814; match to protein family HMM TIGR00329; metalloendopeptidase glycoprotease family complement(200705..201694) Neorickettsia sennetsu str. Miyayama 3931636 YP_506131.1 CDS NSE_0237 NC_007798.1 201691 202701 R identified by match to protein family HMM TIGR02122; TRAP transporter solute receptor TAXI family protein complement(201691..202701) Neorickettsia sennetsu str. Miyayama 3931500 YP_506132.1 CDS NSE_0238 NC_007798.1 202982 203947 D identified by match to protein family HMM PF00348; polyprenyl synthetase family protein 202982..203947 Neorickettsia sennetsu str. Miyayama 3932073 YP_506133.1 CDS NSE_0239 NC_007798.1 204022 204126 R hypothetical protein complement(204022..204126) Neorickettsia sennetsu str. Miyayama 3932225 YP_506134.1 CDS NSE_0240 NC_007798.1 204135 205076 D identified by match to protein family HMM PF01925; hypothetical protein 204135..205076 Neorickettsia sennetsu str. Miyayama 3931557 YP_506135.1 CDS NSE_0241 NC_007798.1 205073 205816 D identified by similarity to GB:CAC45110.1; hypothetical protein 205073..205816 Neorickettsia sennetsu str. Miyayama 3931803 YP_506136.1 CDS NSE_0242 NC_007798.1 205891 207426 R identified by similarity to GB:AAB46982.1; 51 kDa major antigen complement(205891..207426) Neorickettsia sennetsu str. Miyayama 3931999 YP_506137.1 CDS NSE_0243 NC_007798.1 207469 207597 R hypothetical protein complement(207469..207597) Neorickettsia sennetsu str. Miyayama 3932009 YP_506138.1 CDS NSE_0244 NC_007798.1 207575 207769 R hypothetical protein complement(207575..207769) Neorickettsia sennetsu str. Miyayama 3932208 YP_506139.1 CDS NSE_0245 NC_007798.1 207848 209257 R hypothetical protein complement(207848..209257) Neorickettsia sennetsu str. Miyayama 3932071 YP_506140.1 CDS nth NC_007798.1 209356 210006 R identified by similarity to SP:P20625; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III complement(209356..210006) Neorickettsia sennetsu str. Miyayama 3931594 YP_506141.1 CDS NSE_0247 NC_007798.1 210080 210817 R identified by similarity to SP:Q48269; match to protein family HMM PF01066; putative CDP-diacylglycerol--serine O-phosphatidyltransferase complement(210080..210817) Neorickettsia sennetsu str. Miyayama 3932094 YP_506142.1 CDS NSE_0248 NC_007798.1 210824 211501 R identified by match to protein family HMM PF02666; match to protein family HMM TIGR00164; phosphatidylserine decarboxylase-like protein complement(210824..211501) Neorickettsia sennetsu str. Miyayama 3932283 YP_506143.1 CDS NSE_0249 NC_007798.1 211566 211997 R identified by similarity to SP:Q8YEA4; match to protein family HMM PF02130; match to protein family HMM TIGR00043; hypothetical protein complement(211566..211997) Neorickettsia sennetsu str. Miyayama 3932018 YP_506144.1 CDS sucD NC_007798.1 212197 213069 R identified by match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019; succinyl-CoA synthetase subunit alpha complement(212197..213069) Neorickettsia sennetsu str. Miyayama 3932035 YP_506145.1 CDS sucC NC_007798.1 213069 214247 R identified by similarity to SP:P80886; match to protein family HMM PF00549; match to protein family HMM PF02222; match to protein family HMM TIGR01016; succinyl-CoA synthetase subunit beta complement(213069..214247) Neorickettsia sennetsu str. Miyayama 3931912 YP_506146.1 CDS thiL NC_007798.1 214520 215461 D identified by similarity to SP:P77785; match to protein family HMM PF02769; match to protein family HMM TIGR01379; thiamine-monophosphate kinase 214520..215461 Neorickettsia sennetsu str. Miyayama 3932042 YP_506147.1 CDS tpiA NC_007798.1 215641 216366 D identified by match to protein family HMM PF00121; match to protein family HMM TIGR00419; triosephosphate isomerase 215641..216366 Neorickettsia sennetsu str. Miyayama 3932260 YP_506148.1 CDS NSE_0255 NC_007798.1 216393 217301 D identified by match to protein family HMM PF00581; rhodanese domain-containing protein 216393..217301 Neorickettsia sennetsu str. Miyayama 3931425 YP_506149.1 CDS gatA NC_007798.1 217455 218903 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 217455..218903 Neorickettsia sennetsu str. Miyayama 3932049 YP_506150.1 CDS rpmG NC_007798.1 218995 219174 D identified by similarity to SP:P02436; match to protein family HMM PF00471; match to protein family HMM TIGR01023; 50S ribosomal protein L33 218995..219174 Neorickettsia sennetsu str. Miyayama 3931845 YP_506151.1 CDS ctaG NC_007798.1 219190 219735 D involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 219190..219735 Neorickettsia sennetsu str. Miyayama 3931822 YP_506152.1 CDS dnaA NC_007798.1 220315 221739 D identified by similarity to SP:P03004; match to protein family HMM PF00308; match to protein family HMM TIGR00362; chromosomal replication initiator protein DnaA 220315..221739 Neorickettsia sennetsu str. Miyayama 3931910 YP_506153.1 CDS asd NC_007798.1 221807 222811 D identified by similarity to SP:Q56732; match to protein family HMM PF01118; match to protein family HMM PF02774; aspartate-semialdehyde dehydrogenase 221807..222811 Neorickettsia sennetsu str. Miyayama 3931391 YP_506154.1 CDS NSE_0261 NC_007798.1 222878 223009 D hypothetical protein 222878..223009 Neorickettsia sennetsu str. Miyayama 3931992 YP_506155.1 CDS NSE_0262 NC_007798.1 223091 223822 R identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; RNA methyltransferase complement(223091..223822) Neorickettsia sennetsu str. Miyayama 3931505 YP_506156.1 CDS rpsJ NC_007798.1 224149 224460 D identified by match to protein family HMM PF00338; match to protein family HMM TIGR01049; 30S ribosomal protein S10 224149..224460 Neorickettsia sennetsu str. Miyayama 3931931 YP_506157.1 CDS rplC NC_007798.1 224453 225085 D identified by similarity to SP:P02386; match to protein family HMM PF00297; 50S ribosomal protein L3 224453..225085 Neorickettsia sennetsu str. Miyayama 3931338 YP_506158.1 CDS rplD NC_007798.1 225085 225729 D identified by similarity to SP:P28601; match to protein family HMM PF00573; 50S ribosomal protein L4 225085..225729 Neorickettsia sennetsu str. Miyayama 3931993 YP_506159.1 CDS rplW NC_007798.1 225726 226010 D identified by match to protein family HMM PF00276; 50S ribosomal protein L23 225726..226010 Neorickettsia sennetsu str. Miyayama 3931566 YP_506160.1 CDS rplB NC_007798.1 226016 226855 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 226016..226855 Neorickettsia sennetsu str. Miyayama 3931693 YP_506161.1 CDS rpsS NC_007798.1 226864 227139 D identified by similarity to SP:P12731; match to protein family HMM PF00203; match to protein family HMM TIGR01050; 30S ribosomal protein S19 226864..227139 Neorickettsia sennetsu str. Miyayama 3931362 YP_506162.1 CDS rplV NC_007798.1 227136 227477 D identified by similarity to SP:P02423; match to protein family HMM PF00237; match to protein family HMM TIGR01044; 50S ribosomal protein L22 227136..227477 Neorickettsia sennetsu str. Miyayama 3931467 YP_506163.1 CDS rpsC NC_007798.1 227461 228096 D identified by similarity to SP:P02352; match to protein family HMM PF00189; match to protein family HMM PF00417; match to protein family HMM PF07650; match to protein family HMM TIGR01009; 30S ribosomal protein S3 227461..228096 Neorickettsia sennetsu str. Miyayama 3931521 YP_506164.1 CDS rplP NC_007798.1 228112 228531 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 228112..228531 Neorickettsia sennetsu str. Miyayama 3932038 YP_506165.1 CDS rpmC NC_007798.1 228528 228722 D identified by match to protein family HMM TIGR00012; 50S ribosomal protein L29 228528..228722 Neorickettsia sennetsu str. Miyayama 3931664 YP_506166.1 CDS rpsQ NC_007798.1 228724 228948 D identified by match to protein family HMM PF00366; 30S ribosomal protein S17 228724..228948 Neorickettsia sennetsu str. Miyayama 3931641 YP_506167.1 CDS rplN NC_007798.1 228966 229325 D identified by similarity to SP:P02411; match to protein family HMM PF00238; match to protein family HMM TIGR01067; 50S ribosomal protein L14 228966..229325 Neorickettsia sennetsu str. Miyayama 3931476 YP_506168.1 CDS rplX NC_007798.1 229322 229636 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 229322..229636 Neorickettsia sennetsu str. Miyayama 3931698 YP_506169.1 CDS rplE NC_007798.1 229652 230185 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 229652..230185 Neorickettsia sennetsu str. Miyayama 3932054 YP_506170.1 CDS rpsN NC_007798.1 230202 230507 D identified by match to protein family HMM PF00253; 30S ribosomal protein S14 230202..230507 Neorickettsia sennetsu str. Miyayama 3932123 YP_506171.1 CDS rpsH NC_007798.1 230527 230922 D identified by similarity to SP:P02361; match to protein family HMM PF00410; 30S ribosomal protein S8 230527..230922 Neorickettsia sennetsu str. Miyayama 3931382 YP_506172.1 CDS rplF NC_007798.1 230925 231455 D identified by similarity to SP:P04448; match to protein family HMM PF00347; 50S ribosomal protein L6 230925..231455 Neorickettsia sennetsu str. Miyayama 3931705 YP_506173.1 CDS rplR NC_007798.1 231475 231828 D identified by similarity to SP:P46899; 50S ribosomal protein L18 231475..231828 Neorickettsia sennetsu str. Miyayama 3932017 YP_506174.1 CDS rpsE NC_007798.1 231845 232363 D identified by similarity to SP:P21467; match to protein family HMM PF00333; match to protein family HMM PF03719; match to protein family HMM TIGR01021; 30S ribosomal protein S5 231845..232363 Neorickettsia sennetsu str. Miyayama 3931470 YP_506175.1 CDS rplO NC_007798.1 232360 232809 D identified by similarity to SP:P19946; match to protein family HMM PF01305; 50S ribosomal protein L15 232360..232809 Neorickettsia sennetsu str. Miyayama 3931725 YP_506176.1 CDS secY NC_007798.1 232806 234116 D identified by similarity to SP:P03844; match to protein family HMM PF00344; match to protein family HMM TIGR00967; preprotein translocase subunit SecY 232806..234116 Neorickettsia sennetsu str. Miyayama 3932107 YP_506177.1 CDS adk NC_007798.1 234113 234742 D identified by similarity to SP:P10772; match to protein family HMM PF00406; adenylate kinase 234113..234742 Neorickettsia sennetsu str. Miyayama 3931914 YP_506178.1 CDS rpsM NC_007798.1 234756 235127 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 234756..235127 Neorickettsia sennetsu str. Miyayama 3932234 YP_506179.1 CDS rpsK NC_007798.1 235140 235502 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 235140..235502 Neorickettsia sennetsu str. Miyayama 3931720 YP_506180.1 CDS rpoA NC_007798.1 235540 236541 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 235540..236541 Neorickettsia sennetsu str. Miyayama 3931778 YP_506181.1 CDS rplQ NC_007798.1 236560 236913 D identified by similarity to SP:P02416; match to protein family HMM PF01196; match to protein family HMM TIGR00059; 50S ribosomal protein L17 236560..236913 Neorickettsia sennetsu str. Miyayama 3931555 YP_506182.1 CDS NSE_0291 NC_007798.1 236932 237261 R identified by similarity to PIR:E82767; hypothetical protein complement(236932..237261) Neorickettsia sennetsu str. Miyayama 3931952 YP_506183.1 CDS pgpA NC_007798.1 237242 237751 R identified by similarity to SP:P18200; match to protein family HMM PF04608; phosphatidylglycerophosphatase A complement(237242..237751) Neorickettsia sennetsu str. Miyayama 3932077 YP_506184.1 CDS infC NC_007798.1 237738 238307 R identified by similarity to SP:P03000; match to protein family HMM PF00707; match to protein family HMM PF05198; translation initiation factor IF-3 complement(237738..238307) Neorickettsia sennetsu str. Miyayama 3932008 YP_506185.1 CDS thrS NC_007798.1 238350 240263 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(238350..240263) Neorickettsia sennetsu str. Miyayama 3931448 YP_506186.1 CDS NSE_0296 NC_007798.1 240478 241422 R hypothetical protein complement(240478..241422) Neorickettsia sennetsu str. Miyayama 3932257 YP_506187.1 CDS NSE_0297 NC_007798.1 241441 241776 R identified by match to protein family HMM PF00111; iron-sulfur cluster binding protein complement(241441..241776) Neorickettsia sennetsu str. Miyayama 3931922 YP_506188.1 CDS NSE_0298 NC_007798.1 241778 243559 R identified by similarity to SP:P36541; match to protein family HMM PF00012; putative chaperone protein HscA complement(241778..243559) Neorickettsia sennetsu str. Miyayama 3932226 YP_506189.1 CDS NSE_0299 NC_007798.1 243537 244016 R identified by similarity to SP:P36540; match to protein family HMM PF00226; match to protein family HMM PF07743; putative chaperone protein HscB complement(243537..244016) Neorickettsia sennetsu str. Miyayama 3932308 YP_506190.1 CDS NSE_0300 NC_007798.1 244031 244129 R hypothetical protein complement(244031..244129) Neorickettsia sennetsu str. Miyayama 3931838 YP_506191.1 CDS NSE_0301 NC_007798.1 244126 244491 R identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; iron-sulfur cluster assembly accessory protein complement(244126..244491) Neorickettsia sennetsu str. Miyayama 3931987 YP_506192.1 CDS iscU NC_007798.1 244519 244947 R identified by match to protein family HMM PF01592; match to protein family HMM TIGR01999; scaffold protein complement(244519..244947) Neorickettsia sennetsu str. Miyayama 3931758 YP_506193.1 CDS iscS NC_007798.1 245003 246211 R identified by similarity to SP:P39171; match to protein family HMM PF00266; match to protein family HMM PF01212; cysteine desulfurase complement(245003..246211) Neorickettsia sennetsu str. Miyayama 3932152 YP_506194.1 CDS NSE_0304 NC_007798.1 246255 247847 R identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM PF02082; match to protein family HMM TIGR00738; rrf2/class V aminotransferase family protein complement(246255..247847) Neorickettsia sennetsu str. Miyayama 3932303 YP_506195.1 CDS NSE_0305 NC_007798.1 248179 249813 D identified by similarity to GB:AAS14787.1; putative transporter 248179..249813 Neorickettsia sennetsu str. Miyayama 3931506 YP_506196.1 CDS NSE_0306 NC_007798.1 249797 250381 D identified by match to protein family HMM PF01386; match to protein family HMM TIGR00731; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 249797..250381 Neorickettsia sennetsu str. Miyayama 3932101 YP_506197.1 CDS pth NC_007798.1 250381 250965 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 250381..250965 Neorickettsia sennetsu str. Miyayama 3931915 YP_506198.1 CDS gshA NC_007798.1 251072 252247 R identified by similarity to GB:AAB41630.1; match to protein family HMM TIGR02049; glutamate--cysteine ligase complement(251072..252247) Neorickettsia sennetsu str. Miyayama 3931398 YP_506199.1 CDS coaE NC_007798.1 252430 253032 R identified by match to protein family HMM PF01121; match to protein family HMM TIGR00152; dephospho-CoA kinase complement(252430..253032) Neorickettsia sennetsu str. Miyayama 3932239 YP_506200.1 CDS NSE_0310 NC_007798.1 253032 253793 R identified by similarity to SP:O33196; match to protein family HMM PF01513; putative ATP-NAD kinase complement(253032..253793) Neorickettsia sennetsu str. Miyayama 3931816 YP_506201.1 CDS grxC NC_007798.1 253796 254065 R identified by similarity to SP:P37687; match to protein family HMM PF00462; match to protein family HMM TIGR02181; glutaredoxin 3 complement(253796..254065) Neorickettsia sennetsu str. Miyayama 3932190 YP_506202.1 CDS rpoD NC_007798.1 254613 256475 R identified by similarity to SP:Q59753; match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542; RNA polymerase sigma factor RpoD complement(254613..256475) Neorickettsia sennetsu str. Miyayama 3931706 YP_506203.1 CDS clpA NC_007798.1 256575 258797 R identified by similarity to SP:P15716; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; ATP-dependent Clp protease, ATP-binding subunit ClpA complement(256575..258797) Neorickettsia sennetsu str. Miyayama 3932210 YP_506204.1 CDS NSE_0314 NC_007798.1 258824 259135 R hypothetical protein complement(258824..259135) Neorickettsia sennetsu str. Miyayama 3932279 YP_506205.1 CDS NSE_0315 NC_007798.1 259202 259876 R identified by match to protein family HMM PF00005; putative lipoprotein releasing system ATP-binding protein LolD complement(259202..259876) Neorickettsia sennetsu str. Miyayama 3931589 YP_506206.1 CDS NSE_0316 NC_007798.1 260131 260259 D hypothetical protein 260131..260259 Neorickettsia sennetsu str. Miyayama 3931913 YP_506207.1 CDS NSE_0317 NC_007798.1 260324 262534 R identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360; ComEC/Rec2 family protein complement(260324..262534) Neorickettsia sennetsu str. Miyayama 3931546 YP_506208.1 CDS NSE_0318 NC_007798.1 262669 263601 D identified by match to protein family HMM PF01571; aminomethyl transferase family protein 262669..263601 Neorickettsia sennetsu str. Miyayama 3931435 YP_506209.1 CDS yajC NC_007798.1 263902 264204 D identified by similarity to SP:Q9ZG87; match to protein family HMM PF02699; match to protein family HMM TIGR00739; preprotein translocase subunit YajC 263902..264204 Neorickettsia sennetsu str. Miyayama 3931659 YP_506210.1 CDS pdxJ NC_007798.1 264220 264954 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 264220..264954 Neorickettsia sennetsu str. Miyayama 3931373 YP_506211.1 CDS NSE_0321 NC_007798.1 265024 265332 D identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; 50S ribosomal protein L28 265024..265332 Neorickettsia sennetsu str. Miyayama 3932186 YP_506212.1 CDS lipA NC_007798.1 265307 266197 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 265307..266197 Neorickettsia sennetsu str. Miyayama 3931843 YP_506213.1 CDS NSE_0323 NC_007798.1 266366 266845 D identified by match to protein family HMM PF03364; aromatic rich family protein 266366..266845 Neorickettsia sennetsu str. Miyayama 3931804 YP_506214.1 CDS NSE_0324 NC_007798.1 266964 267776 R identified by similarity to GB:AAS14071.1; match to protein family HMM PF03618; hypothetical protein complement(266964..267776) Neorickettsia sennetsu str. Miyayama 3931957 YP_506215.1 CDS NSE_0326 NC_007798.1 268039 268317 R hypothetical protein complement(268039..268317) Neorickettsia sennetsu str. Miyayama 3931513 YP_506216.1 CDS NSE_0327 NC_007798.1 268330 269088 D identified by match to protein family HMM PF00571; CBS/transporter associated domain-containing protein 268330..269088 Neorickettsia sennetsu str. Miyayama 3931990 YP_506217.1 CDS NSE_0328 NC_007798.1 269201 270601 D hypothetical protein 269201..270601 Neorickettsia sennetsu str. Miyayama 3932093 YP_506218.1 CDS NSE_0329 NC_007798.1 270637 270780 D hypothetical protein 270637..270780 Neorickettsia sennetsu str. Miyayama 3931418 YP_506219.1 CDS NSE_0330 NC_007798.1 270789 271208 D identified by similarity to SP:P80448; match to protein family HMM PF00037; ferredoxin 270789..271208 Neorickettsia sennetsu str. Miyayama 3932050 YP_506220.1 CDS NSE_0331 NC_007798.1 271230 271682 D identified by similarity to GB:AAS14508.1; hypothetical protein 271230..271682 Neorickettsia sennetsu str. Miyayama 3932273 YP_506221.1 CDS NSE_0332 NC_007798.1 271591 271791 D hypothetical protein 271591..271791 Neorickettsia sennetsu str. Miyayama 3931806 YP_506222.1 CDS cysS NC_007798.1 271801 273324 D identified by similarity to SP:P21888; match to protein family HMM PF01406; match to protein family HMM TIGR00435; cysteinyl-tRNA synthetase 271801..273324 Neorickettsia sennetsu str. Miyayama 3931752 YP_506223.1 CDS NSE_0334 NC_007798.1 273423 273617 D hypothetical protein 273423..273617 Neorickettsia sennetsu str. Miyayama 3932263 YP_506224.1 CDS mutS NC_007798.1 273806 276253 D identified by similarity to SP:P49849; match to protein family HMM PF00488; match to protein family HMM PF01624; match to protein family HMM PF05188; match to protein family HMM PF05190; match to protein family HMM PF05192; match to protein family HMM TIGR01070; DNA mismatch repair protein MutS 273806..276253 Neorickettsia sennetsu str. Miyayama 3931998 YP_506225.1 CDS rpe NC_007798.1 276543 277205 D identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; ribulose-phosphate 3-epimerase 276543..277205 Neorickettsia sennetsu str. Miyayama 3931793 YP_506226.1 CDS map NC_007798.1 277355 278143 R identified by similarity to SP:P07906; match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase complement(277355..278143) Neorickettsia sennetsu str. Miyayama 3931403 YP_506227.1 CDS NSE_0338 NC_007798.1 278179 278385 R hypothetical protein complement(278179..278385) Neorickettsia sennetsu str. Miyayama 3932287 YP_506228.1 CDS NSE_0339 NC_007798.1 278349 278876 R Coq7 family protein complement(278349..278876) Neorickettsia sennetsu str. Miyayama 3931680 YP_506229.1 CDS NSE_0340 NC_007798.1 278854 279351 R identified by match to protein family HMM PF02600; DsbB family disulfide bond formation protein complement(278854..279351) Neorickettsia sennetsu str. Miyayama 3931507 YP_506230.1 CDS rpoH NC_007798.1 279854 280720 D identified by similarity to SP:P48194; match to protein family HMM PF04542; match to protein family HMM PF04545; RNA polymerase sigma-32 factor 279854..280720 Neorickettsia sennetsu str. Miyayama 3931426 YP_506231.1 CDS ftsZ NC_007798.1 280727 281845 D identified by similarity to GB:AAK00615.2; match to protein family HMM PF00091; match to protein family HMM PF03953; match to protein family HMM TIGR00065; cell division protein FtsZ 280727..281845 Neorickettsia sennetsu str. Miyayama 3931525 YP_506232.1 CDS NSE_0343 NC_007798.1 282179 282739 D identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; ribosomal subunit interface protein 282179..282739 Neorickettsia sennetsu str. Miyayama 3931471 YP_506233.1 CDS NSE_0344 NC_007798.1 282905 283042 D hypothetical protein 282905..283042 Neorickettsia sennetsu str. Miyayama 3931607 YP_506234.1 CDS tyrS NC_007798.1 283091 284266 R identified by similarity to SP:P00951; match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234; tyrosyl-tRNA synthetase complement(283091..284266) Neorickettsia sennetsu str. Miyayama 3931723 YP_506235.1 CDS bfr NC_007798.1 284286 284747 R identified by match to protein family HMM PF00210; match to protein family HMM PF02915; match to protein family HMM TIGR00754; bacterioferritin complement(284286..284747) Neorickettsia sennetsu str. Miyayama 3932175 YP_506236.1 CDS lon NC_007798.1 284981 287461 R identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763; ATP-dependent protease La complement(284981..287461) Neorickettsia sennetsu str. Miyayama 3931624 YP_506237.1 CDS NSE_0348 NC_007798.1 287515 288096 R identified by similarity to GB:AAK25708.1; match to protein family HMM PF02581; hypothetical protein complement(287515..288096) Neorickettsia sennetsu str. Miyayama 3932196 YP_506238.1 CDS NSE_0349 NC_007798.1 288093 288503 R identified by match to protein family HMM PF03653; hypothetical protein complement(288093..288503) Neorickettsia sennetsu str. Miyayama 3932251 YP_506239.1 CDS glnA NC_007798.1 288531 289937 R identified by similarity to SP:P06201; match to protein family HMM PF00120; match to protein family HMM PF03951; glutamine synthetase complement(288531..289937) Neorickettsia sennetsu str. Miyayama 3931370 YP_506240.1 CDS NSE_0351 NC_007798.1 290087 290185 D hypothetical protein 290087..290185 Neorickettsia sennetsu str. Miyayama 3931496 YP_506241.1 CDS nrdR NC_007798.1 290182 290631 D identified by similarity to SP:Q89K77; match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR 290182..290631 Neorickettsia sennetsu str. Miyayama 3931590 YP_506242.1 CDS NSE_0353 NC_007798.1 290732 290860 R hypothetical protein complement(290732..290860) Neorickettsia sennetsu str. Miyayama 3932060 YP_506243.1 CDS NSE_0354 NC_007798.1 290778 290948 R hypothetical protein complement(290778..290948) Neorickettsia sennetsu str. Miyayama 3932174 YP_506244.1 CDS NSE_0355 NC_007798.1 290824 290922 D hypothetical protein 290824..290922 Neorickettsia sennetsu str. Miyayama 3931897 YP_506245.1 CDS NSE_0356 NC_007798.1 290897 292789 R identified by match to protein family HMM PF00580; UvrD/Rep family helicase complement(290897..292789) Neorickettsia sennetsu str. Miyayama 3932197 YP_506246.1 CDS NSE_0357 NC_007798.1 293164 293970 R identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family hydrolase complement(293164..293970) Neorickettsia sennetsu str. Miyayama 3932127 YP_506247.1 CDS NSE_0358 NC_007798.1 294053 294172 R hypothetical protein complement(294053..294172) Neorickettsia sennetsu str. Miyayama 3931581 YP_506248.1 CDS NSE_0359 NC_007798.1 294217 294711 R identified by match to protein family HMM TIGR00809; putative protein-export protein SecB complement(294217..294711) Neorickettsia sennetsu str. Miyayama 3931547 YP_506249.1 CDS NSE_0360 NC_007798.1 294822 295448 D identified by match to protein family HMM PF04280; Tim44-like domain-containing protein 294822..295448 Neorickettsia sennetsu str. Miyayama 3932007 YP_506250.1 CDS NSE_0361 NC_007798.1 295429 295659 D putative lipoprotein 295429..295659 Neorickettsia sennetsu str. Miyayama 3931742 YP_506251.1 CDS ksgA NC_007798.1 295681 296469 R identified by similarity to SP:P06992; match to protein family HMM PF00398; match to protein family HMM TIGR00755; dimethyladenosine transferase complement(295681..296469) Neorickettsia sennetsu str. Miyayama 3931545 YP_506252.1 CDS NSE_0363 NC_007798.1 296464 296598 D hypothetical protein 296464..296598 Neorickettsia sennetsu str. Miyayama 3932198 YP_506253.1 CDS NSE_0364 NC_007798.1 296591 296713 D hypothetical protein 296591..296713 Neorickettsia sennetsu str. Miyayama 3931487 YP_506254.1 CDS NSE_0365 NC_007798.1 296771 297895 D hypothetical protein 296771..297895 Neorickettsia sennetsu str. Miyayama 3932066 YP_506255.1 CDS NSE_0366 NC_007798.1 297885 300113 D identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase/response regulator 297885..300113 Neorickettsia sennetsu str. Miyayama 3931443 YP_506256.1 CDS proS NC_007798.1 300119 301429 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 300119..301429 Neorickettsia sennetsu str. Miyayama 3931764 YP_506257.1 CDS NSE_0368 NC_007798.1 301456 302184 D hypothetical protein 301456..302184 Neorickettsia sennetsu str. Miyayama 3931726 YP_506258.1 CDS ppdK NC_007798.1 302295 304898 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 302295..304898 Neorickettsia sennetsu str. Miyayama 3932219 YP_506259.1 CDS NSE_0370 NC_007798.1 304899 305108 D hypothetical protein 304899..305108 Neorickettsia sennetsu str. Miyayama 3932289 YP_506260.1 CDS NSE_0371 NC_007798.1 305092 305652 R identified by similarity to SP:P28225; match to protein family HMM PF01243; putative pyridoxamine 5-phosphate oxidase complement(305092..305652) Neorickettsia sennetsu str. Miyayama 3931462 YP_506261.1 CDS NSE_0372 NC_007798.1 306113 306853 D hypothetical protein 306113..306853 Neorickettsia sennetsu str. Miyayama 3931529 YP_506262.1 CDS NSE_0373 NC_007798.1 306962 307957 R identified by similarity to SP:Q08111; match to protein family HMM PF01207; match to protein family HMM TIGR00737; putative tRNA-dihydrouridine synthase complement(306962..307957) Neorickettsia sennetsu str. Miyayama 3932261 YP_506263.1 CDS surE NC_007798.1 308166 308930 R identified by match to protein family HMM PF01975; match to protein family HMM TIGR00087; acid phosphatase SurE complement(308166..308930) Neorickettsia sennetsu str. Miyayama 3931932 YP_506264.1 CDS NSE_0375 NC_007798.1 308915 309076 R hypothetical protein complement(308915..309076) Neorickettsia sennetsu str. Miyayama 3931907 YP_506265.1 CDS sdhA NC_007798.1 309273 311066 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 309273..311066 Neorickettsia sennetsu str. Miyayama 3931671 YP_506266.1 CDS NSE_0377 NC_007798.1 311189 311989 R hypothetical protein complement(311189..311989) Neorickettsia sennetsu str. Miyayama 3931434 YP_506267.1 CDS NSE_0378 NC_007798.1 312028 312189 D hypothetical protein 312028..312189 Neorickettsia sennetsu str. Miyayama 3932031 YP_506268.1 CDS NSE_0379 NC_007798.1 312134 312247 R hypothetical protein complement(312134..312247) Neorickettsia sennetsu str. Miyayama 3931349 YP_506269.1 CDS qor NC_007798.1 312371 313381 D identified by similarity to SP:P28304; match to protein family HMM PF00107; quinone oxidoreductase 312371..313381 Neorickettsia sennetsu str. Miyayama 3932124 YP_506270.1 CDS NSE_0381 NC_007798.1 313382 313522 D hypothetical protein 313382..313522 Neorickettsia sennetsu str. Miyayama 3931647 YP_506271.1 CDS NSE_0382 NC_007798.1 313569 313709 D hypothetical protein 313569..313709 Neorickettsia sennetsu str. Miyayama 3931827 YP_506272.1 CDS NSE_0383 NC_007798.1 313714 314004 D identified by match to protein family HMM PF04800; putative oxidoreductase 313714..314004 Neorickettsia sennetsu str. Miyayama 3932243 YP_506273.1 CDS NSE_0384 NC_007798.1 314001 315134 D identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 314001..315134 Neorickettsia sennetsu str. Miyayama 3932233 YP_506274.1 CDS NSE_0385 NC_007798.1 315148 316008 D identified by similarity to SP:P06983; match to protein family HMM PF01379; match to protein family HMM PF03900; match to protein family HMM TIGR00212; putative porphobilinogen deaminase 315148..316008 Neorickettsia sennetsu str. Miyayama 3931854 YP_506275.1 CDS NSE_0386 NC_007798.1 316415 317437 R identified by similarity to SP:P34943; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993; NADH-ubiquinone oxidoreductase family protein complement(316415..317437) Neorickettsia sennetsu str. Miyayama 3932095 YP_506276.1 CDS NSE_0387 NC_007798.1 317621 317713 R hypothetical protein complement(317621..317713) Neorickettsia sennetsu str. Miyayama 3931580 YP_506277.1 CDS NSE_0388 NC_007798.1 317767 318903 R identified by similarity to SP:P43862; match to protein family HMM PF02481; match to protein family HMM TIGR00732; putative DNA processing protein DprA complement(317767..318903) Neorickettsia sennetsu str. Miyayama 3931554 YP_506278.1 CDS NSE_0389 NC_007798.1 319052 319468 D identified by similarity to GB:AAS14547.1; hypothetical protein 319052..319468 Neorickettsia sennetsu str. Miyayama 3931482 YP_506279.1 CDS NSE_0390 NC_007798.1 319441 319533 D hypothetical protein 319441..319533 Neorickettsia sennetsu str. Miyayama 3932074 YP_506280.1 CDS def NC_007798.1 320139 320699 D identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079; peptide deformylase 320139..320699 Neorickettsia sennetsu str. Miyayama 3931718 YP_506281.1 CDS hemB NC_007798.1 321045 322010 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 321045..322010 Neorickettsia sennetsu str. Miyayama 3932051 YP_506282.1 CDS NSE_0395 NC_007798.1 322213 323052 R identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765; YihY family protein complement(322213..323052) Neorickettsia sennetsu str. Miyayama 3931841 YP_506283.1 CDS atpB NC_007798.1 323162 323893 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 323162..323893 Neorickettsia sennetsu str. Miyayama 3931865 YP_506284.1 CDS atpE NC_007798.1 323916 324143 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 323916..324143 Neorickettsia sennetsu str. Miyayama 3931792 YP_506285.1 CDS atpX NC_007798.1 324144 324674 D identified by similarity to SP:P15015; ATP synthase F0 subunit B' 324144..324674 Neorickettsia sennetsu str. Miyayama 3931997 YP_506286.1 CDS NSE_0399 NC_007798.1 324665 325159 D identified by similarity to PIR:AI0500; putative ATPase F0 subunit B 324665..325159 Neorickettsia sennetsu str. Miyayama 3931353 YP_506287.1 CDS NSE_0400 NC_007798.1 325062 325439 D hypothetical protein 325062..325439 Neorickettsia sennetsu str. Miyayama 3931404 YP_506288.1 CDS ribE-1 NC_007798.1 325597 326046 R identified by similarity to SP:P51963; match to protein family HMM PF00885; match to protein family HMM TIGR00114; 6,7-dimethyl-8-ribityllumazine synthase complement(325597..326046) Neorickettsia sennetsu str. Miyayama 3931560 YP_506289.1 CDS NSE_0402 NC_007798.1 326227 327927 R identified by match to protein family HMM PF02096; inner membrane protein, 60 kDa complement(326227..327927) Neorickettsia sennetsu str. Miyayama 3932220 YP_506290.1 CDS NSE_0403 NC_007798.1 327915 328007 D hypothetical protein 327915..328007 Neorickettsia sennetsu str. Miyayama 3931365 YP_506291.1 CDS NSE_0404 NC_007798.1 328184 329476 D identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; CBS domain-containing protein 328184..329476 Neorickettsia sennetsu str. Miyayama 3931598 YP_506292.1 CDS NSE_0405 NC_007798.1 329516 329632 D hypothetical protein 329516..329632 Neorickettsia sennetsu str. Miyayama 3931985 YP_506293.1 CDS prfA NC_007798.1 329625 330728 D identified by similarity to SP:P07011; match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00019; peptide chain release factor 1 329625..330728 Neorickettsia sennetsu str. Miyayama 3931950 YP_506294.1 CDS NSE_0407 NC_007798.1 330832 331626 D identified by similarity to GB:AAG30826.1; match to protein family HMM PF01553; 1-acyl-sn-glycerol-3-phosphate acyltransferase family protein 330832..331626 Neorickettsia sennetsu str. Miyayama 3931361 YP_506295.1 CDS rpsA NC_007798.1 331727 333388 D identified by similarity to SP:P02349; match to protein family HMM PF00575; 30S ribosomal protein S1 331727..333388 Neorickettsia sennetsu str. Miyayama 3932255 YP_506296.1 CDS sppA NC_007798.1 333406 334332 D identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706; signal peptide peptidase SppA, 36K type 333406..334332 Neorickettsia sennetsu str. Miyayama 3931385 YP_506297.1 CDS NSE_0410 NC_007798.1 334411 336084 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; putative ABC transporter ATP-binding/permease 334411..336084 Neorickettsia sennetsu str. Miyayama 3931869 YP_506298.1 CDS nrdA NC_007798.1 336154 337971 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(336154..337971) Neorickettsia sennetsu str. Miyayama 3932191 YP_506299.1 CDS NSE_0413 NC_007798.1 338504 338857 D identified by match to protein family HMM PF01230; HIT domain-containing protein 338504..338857 Neorickettsia sennetsu str. Miyayama 3932010 YP_506300.1 CDS NSE_0414 NC_007798.1 338905 339021 D hypothetical protein 338905..339021 Neorickettsia sennetsu str. Miyayama 3932203 YP_506301.1 CDS xth NC_007798.1 339114 339911 D identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III 339114..339911 Neorickettsia sennetsu str. Miyayama 3931772 YP_506302.1 CDS NSE_0416 NC_007798.1 340113 340925 R identified by similarity to SP:P31773; match to protein family HMM PF00156; putative competence protein F complement(340113..340925) Neorickettsia sennetsu str. Miyayama 3931438 YP_506303.1 CDS NSE_0417 NC_007798.1 341123 342019 R identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00966; putative protein-export membrane protein SecF complement(341123..342019) Neorickettsia sennetsu str. Miyayama 3931988 YP_506304.1 CDS NSE_0418 NC_007798.1 342179 342328 D hypothetical protein 342179..342328 Neorickettsia sennetsu str. Miyayama 3931935 YP_506305.1 CDS NSE_0419 NC_007798.1 342339 342527 D hypothetical protein 342339..342527 Neorickettsia sennetsu str. Miyayama 3931570 YP_506306.1 CDS NSE_0420 NC_007798.1 342545 344797 D NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 342545..344797 Neorickettsia sennetsu str. Miyayama 3931895 YP_506307.1 CDS NSE_0421 NC_007798.1 344835 344939 D hypothetical protein 344835..344939 Neorickettsia sennetsu str. Miyayama 3931339 YP_506308.1 CDS NSE_0422 NC_007798.1 344977 345357 R identified by similarity to PIR:H97753; hypothetical protein complement(344977..345357) Neorickettsia sennetsu str. Miyayama 3931379 YP_506309.1 CDS ftsH NC_007798.1 345354 347264 R identified by similarity to GB:CAB51029.1; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; ATP-dependent metalloprotease FtsH complement(345354..347264) Neorickettsia sennetsu str. Miyayama 3931660 YP_506310.1 CDS NSE_0424 NC_007798.1 347186 347419 D hypothetical protein 347186..347419 Neorickettsia sennetsu str. Miyayama 3931681 YP_506311.1 CDS NSE_0425 NC_007798.1 347410 347502 D hypothetical protein 347410..347502 Neorickettsia sennetsu str. Miyayama 3931453 YP_506312.1 CDS NSE_0426 NC_007798.1 347553 350183 D identified by similarity to SP:P07395; match to protein family HMM PF01588; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472; putative phenylalanyl-tRNA synthetase subunit beta 347553..350183 Neorickettsia sennetsu str. Miyayama 3931921 YP_506313.1 CDS ftsA NC_007798.1 350258 351460 D identified by similarity to SP:P28264; match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA 350258..351460 Neorickettsia sennetsu str. Miyayama 3931591 YP_506314.1 CDS NSE_0428 NC_007798.1 351773 352234 R hypothetical protein complement(351773..352234) Neorickettsia sennetsu str. Miyayama 3931669 YP_506315.1 CDS nuoA NC_007798.1 352330 352785 D identified by similarity to SP:P29919; match to protein family HMM PF00507; NADH dehydrogenase I subunit A 352330..352785 Neorickettsia sennetsu str. Miyayama 3932227 YP_506316.1 CDS NSE_0430 NC_007798.1 352776 352904 D hypothetical protein 352776..352904 Neorickettsia sennetsu str. Miyayama 3931941 YP_506317.1 CDS nuoB NC_007798.1 352952 353455 D The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 352952..353455 Neorickettsia sennetsu str. Miyayama 3932128 YP_506318.1 CDS nuoC NC_007798.1 353471 354031 D identified by similarity to SP:O84971; match to protein family HMM PF00329; match to protein family HMM TIGR01961; NADH dehydrogenase I subunit C 353471..354031 Neorickettsia sennetsu str. Miyayama 3932238 YP_506319.1 CDS gap NC_007798.1 354191 355207 D identified by similarity to SP:O34425; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase 354191..355207 Neorickettsia sennetsu str. Miyayama 3931823 YP_506320.1 CDS NSE_0435 NC_007798.1 355336 355479 D hypothetical protein 355336..355479 Neorickettsia sennetsu str. Miyayama 3931383 YP_506321.1 CDS pgk NC_007798.1 355523 356650 D identified by similarity to SP:P50314; match to protein family HMM PF00162; phosphoglycerate kinase 355523..356650 Neorickettsia sennetsu str. Miyayama 3931685 YP_506322.1 CDS NSE_0437 NC_007798.1 356664 356768 D hypothetical protein 356664..356768 Neorickettsia sennetsu str. Miyayama 3931690 YP_506323.1 CDS ispH NC_007798.1 356761 357672 R identified by similarity to SP:P22565; match to protein family HMM PF02401; match to protein family HMM TIGR00216; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(356761..357672) Neorickettsia sennetsu str. Miyayama 3932177 YP_506324.1 CDS NSE_0439 NC_007798.1 357701 357925 D hypothetical protein 357701..357925 Neorickettsia sennetsu str. Miyayama 3931763 YP_506325.1 CDS NSE_0440 NC_007798.1 357891 358187 D hypothetical protein 357891..358187 Neorickettsia sennetsu str. Miyayama 3931697 YP_506326.1 CDS NSE_0441 NC_007798.1 358184 358894 D hypothetical protein 358184..358894 Neorickettsia sennetsu str. Miyayama 3931812 YP_506327.1 CDS NSE_0442 NC_007798.1 359143 360159 D identified by match to protein family HMM PF00563; EAL domain-containing protein 359143..360159 Neorickettsia sennetsu str. Miyayama 3931970 YP_506328.1 CDS dxr NC_007798.1 360156 361325 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 360156..361325 Neorickettsia sennetsu str. Miyayama 3931891 YP_506329.1 CDS obgE NC_007798.1 361526 362551 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(361526..362551) Neorickettsia sennetsu str. Miyayama 3932090 YP_506330.1 CDS NSE_0445 NC_007798.1 362555 362716 R hypothetical protein complement(362555..362716) Neorickettsia sennetsu str. Miyayama 3932013 YP_506331.1 CDS NSE_0446 NC_007798.1 363071 363745 D identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 363071..363745 Neorickettsia sennetsu str. Miyayama 3932245 YP_506332.1 CDS NSE_0447 NC_007798.1 363841 364764 D identified by similarity to SP:P46352; match to protein family HMM PF00589; match to protein family HMM PF02899; phage integrase family site specific recombinase 363841..364764 Neorickettsia sennetsu str. Miyayama 3932068 YP_506333.1 CDS NSE_0448 NC_007798.1 364994 365716 R identified by similarity to GB:AAS14677.1; putative phosphoribosylformylglycinamidine synthase I complement(364994..365716) Neorickettsia sennetsu str. Miyayama 3931771 YP_506334.1 CDS NSE_0449 NC_007798.1 365808 368309 R hypothetical protein complement(365808..368309) Neorickettsia sennetsu str. Miyayama 3931389 YP_506335.1 CDS NSE_0450 NC_007798.1 368228 368332 D hypothetical protein 368228..368332 Neorickettsia sennetsu str. Miyayama 3931360 YP_506336.1 CDS NSE_0451 NC_007798.1 368635 368757 D hypothetical protein 368635..368757 Neorickettsia sennetsu str. Miyayama 3931688 YP_506337.1 CDS acpP NC_007798.1 368757 369191 D identified by similarity to SP:P80922; acyl carrier protein 368757..369191 Neorickettsia sennetsu str. Miyayama 3931539 YP_506338.1 CDS fabF NC_007798.1 369192 370439 D identified by similarity to SP:P39435; match to protein family HMM PF00109; match to protein family HMM PF02801; 3-oxoacyl-(acyl-carrier-protein) synthase II 369192..370439 Neorickettsia sennetsu str. Miyayama 3931901 YP_506339.1 CDS hemF NC_007798.1 370372 371292 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 370372..371292 Neorickettsia sennetsu str. Miyayama 3931670 YP_506340.1 CDS NSE_0455 NC_007798.1 371337 371918 D identified by similarity to SP:Q9ZC99; match to protein family HMM TIGR02281; hypothetical protein 371337..371918 Neorickettsia sennetsu str. Miyayama 3932144 YP_506341.1 CDS NSE_0456 NC_007798.1 372094 374184 D hypothetical protein 372094..374184 Neorickettsia sennetsu str. Miyayama 3932014 YP_506342.1 CDS NSE_0457 NC_007798.1 374248 374340 D hypothetical protein 374248..374340 Neorickettsia sennetsu str. Miyayama 3931781 YP_506343.1 CDS NSE_0458 NC_007798.1 374463 374999 R identified by match to protein family HMM PF01521; putative iron-sulfur cluster assembly accessory protein complement(374463..374999) Neorickettsia sennetsu str. Miyayama 3931518 YP_506344.1 CDS NSE_0459 NC_007798.1 375053 375145 D hypothetical protein 375053..375145 Neorickettsia sennetsu str. Miyayama 3931675 YP_506345.1 CDS NSE_0460 NC_007798.1 375359 376516 D identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR01353; putative deoxyguanosinetriphosphate triphosphohydrolase 375359..376516 Neorickettsia sennetsu str. Miyayama 3931593 YP_506346.1 CDS NSE_0461 NC_007798.1 376571 377284 D identified by similarity to GB:AAS13963.1; match to protein family HMM TIGR00613; putative DNA repair protein RecO 376571..377284 Neorickettsia sennetsu str. Miyayama 3931441 YP_506347.1 CDS NSE_0462 NC_007798.1 377728 378228 D identified by similarity to GB:AAN30317.1; match to protein family HMM PF07031; hypothetical protein 377728..378228 Neorickettsia sennetsu str. Miyayama 3932298 YP_506348.1 CDS lpdA-1 NC_007798.1 378409 379782 D identified by similarity to SP:P54533; match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01350; dihydrolipoamide dehydrogenase 378409..379782 Neorickettsia sennetsu str. Miyayama 3932249 YP_506349.1 CDS NSE_0464 NC_007798.1 379866 380216 D identified by similarity to SP:Q89WK9; hypothetical protein 379866..380216 Neorickettsia sennetsu str. Miyayama 3932176 YP_506350.1 CDS mgtE NC_007798.1 380375 381688 R identified by match to protein family HMM PF00571; match to protein family HMM PF01769; magnesium transporter complement(380375..381688) Neorickettsia sennetsu str. Miyayama 3931410 YP_506351.1 CDS NSE_0466 NC_007798.1 381860 382969 R identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554; HK97 family phage major capsid protein complement(381860..382969) Neorickettsia sennetsu str. Miyayama 3931776 YP_506352.1 CDS NSE_0467 NC_007798.1 383147 385870 R identified by match to protein family HMM PF00580; ATP-dependent DNA helicase UvrD complement(383147..385870) Neorickettsia sennetsu str. Miyayama 3931444 YP_506353.1 CDS trmU NC_007798.1 385977 387092 R identified by match to protein family HMM PF03054; match to protein family HMM TIGR00420; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase complement(385977..387092) Neorickettsia sennetsu str. Miyayama 3931376 YP_506354.1 CDS NSE_0469 NC_007798.1 387235 387405 D hypothetical protein 387235..387405 Neorickettsia sennetsu str. Miyayama 3932211 YP_506355.1 CDS dnaQ NC_007798.1 387389 388075 D identified by similarity to SP:P03007; match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01406; DNA polymerase III subunit epsilon 387389..388075 Neorickettsia sennetsu str. Miyayama 3932262 YP_506356.1 CDS NSE_0471 NC_007798.1 388285 389922 D identified by match to protein family HMM PF00557; M24 family metallopeptidase 388285..389922 Neorickettsia sennetsu str. Miyayama 3931892 YP_506357.1 CDS NSE_0472 NC_007798.1 390009 390848 R identified by similarity to GB:AAB81313.1; putative hydrolase complement(390009..390848) Neorickettsia sennetsu str. Miyayama 3931574 YP_506358.1 CDS cycM NC_007798.1 390975 391514 R identified by similarity to SP:P30323; match to protein family HMM PF00034; cytochrome c complement(390975..391514) Neorickettsia sennetsu str. Miyayama 3931740 YP_506359.1 CDS purN NC_007798.1 391656 392234 R identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639; phosphoribosylglycinamide formyltransferase complement(391656..392234) Neorickettsia sennetsu str. Miyayama 3931556 YP_506360.1 CDS pepA NC_007798.1 392294 393814 R identified by similarity to SP:P27888; match to protein family HMM PF00883; match to protein family HMM PF02789; cytosol aminopeptidase complement(392294..393814) Neorickettsia sennetsu str. Miyayama 3932102 YP_506361.1 CDS aspS NC_007798.1 394279 396045 D identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM PF02938; match to protein family HMM TIGR00459; aspartyl-tRNA synthetase 394279..396045 Neorickettsia sennetsu str. Miyayama 3931846 YP_506362.1 CDS NSE_0478 NC_007798.1 396275 397252 R identified by similarity to SP:P96613; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase, truncation complement(396275..397252) Neorickettsia sennetsu str. Miyayama 3931974 YP_506363.1 CDS pstA NC_007798.1 397522 398715 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease PstA 397522..398715 Neorickettsia sennetsu str. Miyayama 3932109 YP_506364.1 CDS NSE_0480 NC_007798.1 398722 399735 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 398722..399735 Neorickettsia sennetsu str. Miyayama 3932059 YP_506365.1 CDS NSE_0481 NC_007798.1 399748 399903 D identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411; twin arginine-targeting protein translocase 399748..399903 Neorickettsia sennetsu str. Miyayama 3932272 YP_506366.1 CDS NSE_0482 NC_007798.1 399916 400053 R hypothetical protein complement(399916..400053) Neorickettsia sennetsu str. Miyayama 3932138 YP_506367.1 CDS thiG NC_007798.1 400180 400950 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 400180..400950 Neorickettsia sennetsu str. Miyayama 3932299 YP_506368.1 CDS NSE_0484 NC_007798.1 401073 401252 D hypothetical protein 401073..401252 Neorickettsia sennetsu str. Miyayama 3931617 YP_506369.1 CDS folP NC_007798.1 401238 402062 R identified by similarity to SP:P26282; match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase complement(401238..402062) Neorickettsia sennetsu str. Miyayama 3931534 YP_506370.1 CDS folK NC_007798.1 402270 402830 R identified by similarity to SP:P26281; match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(402270..402830) Neorickettsia sennetsu str. Miyayama 3932120 YP_506371.1 CDS NSE_0487 NC_007798.1 402840 402971 D hypothetical protein 402840..402971 Neorickettsia sennetsu str. Miyayama 3931809 YP_506372.1 CDS metK NC_007798.1 402908 404056 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 402908..404056 Neorickettsia sennetsu str. Miyayama 3932266 YP_506373.1 CDS NSE_0489 NC_007798.1 404059 404463 R identified by similarity to GB:AAM05284.1; hypothetical protein complement(404059..404463) Neorickettsia sennetsu str. Miyayama 3931761 YP_506374.1 CDS NSE_0490 NC_007798.1 404482 404799 R identified by similarity to SP:Q92FZ0; match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein complement(404482..404799) Neorickettsia sennetsu str. Miyayama 3932027 YP_506375.1 CDS NSE_0491 NC_007798.1 405027 405158 R hypothetical protein complement(405027..405158) Neorickettsia sennetsu str. Miyayama 3931577 YP_506376.1 CDS NSE_0492 NC_007798.1 405136 406326 R identified by similarity to GB:AAB61695.1; match to protein family HMM PF00004; match to protein family HMM TIGR02397; putative DNA polymerase III, gamma/tau subunit complement(405136..406326) Neorickettsia sennetsu str. Miyayama 3931782 YP_506377.1 CDS pqqC NC_007798.1 406532 407230 R identified by similarity to SP:Q9L3B2; match to protein family HMM PF05312; coenzyme PQQ synthesis protein C complement(406532..407230) Neorickettsia sennetsu str. Miyayama 3932183 YP_506378.1 CDS NSE_0494 NC_007798.1 407274 407426 R hypothetical protein complement(407274..407426) Neorickettsia sennetsu str. Miyayama 3932235 YP_506379.1 CDS htpG NC_007798.1 407507 409369 D molecular chaperone; heat shock protein 90 407507..409369 Neorickettsia sennetsu str. Miyayama 3932284 YP_506380.1 CDS NSE_0496 NC_007798.1 409574 415339 D identified by match to protein family HMM PF00023; ankyrin repeat-containing protein 409574..415339 Neorickettsia sennetsu str. Miyayama 3931917 YP_506381.1 CDS cutE NC_007798.1 415378 416796 R identified by match to protein family HMM PF00795; match to protein family HMM TIGR00546; apolipoprotein N-acyltransferase complement(415378..416796) Neorickettsia sennetsu str. Miyayama 3931986 YP_506382.1 CDS NSE_0498 NC_007798.1 416793 419252 R hypothetical protein complement(416793..419252) Neorickettsia sennetsu str. Miyayama 3931357 YP_506383.1 CDS ribD NC_007798.1 419393 420511 D identified by similarity to SP:P25539; match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD 419393..420511 Neorickettsia sennetsu str. Miyayama 3932118 YP_506384.1 CDS ligA NC_007798.1 420546 422558 R identified by similarity to SP:O87703; match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575; DNA ligase, NAD-dependent complement(420546..422558) Neorickettsia sennetsu str. Miyayama 3931734 YP_506385.1 CDS NSE_0501 NC_007798.1 422574 422900 R identified by similarity to SP:P31055; putative dihydroneopterin aldolase complement(422574..422900) Neorickettsia sennetsu str. Miyayama 3932213 YP_506386.1 CDS carA NC_007798.1 422881 423978 R identified by similarity to SP:P00907; match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368; carbamoyl-phosphate synthase small subunit complement(422881..423978) Neorickettsia sennetsu str. Miyayama 3931583 YP_506387.1 CDS NSE_0503 NC_007798.1 424002 424232 R identified by similarity to SP:Q9A3C9; hypothetical protein complement(424002..424232) Neorickettsia sennetsu str. Miyayama 3931561 YP_506388.1 CDS NSE_0504 NC_007798.1 424312 424563 R hypothetical protein complement(424312..424563) Neorickettsia sennetsu str. Miyayama 3931485 YP_506389.1 CDS NSE_0505 NC_007798.1 424742 425293 R identified by similarity to GB:BAB50585.1; match to protein family HMM PF06242; hypothetical protein complement(424742..425293) Neorickettsia sennetsu str. Miyayama 3932115 YP_506390.1 CDS leuS NC_007798.1 425402 427957 R identified by match to protein family HMM PF00133; match to protein family HMM TIGR00396; leucyl-tRNA synthetase complement(425402..427957) Neorickettsia sennetsu str. Miyayama 3931695 YP_506391.1 CDS NSE_0507 NC_007798.1 428064 428525 D putative lipoprotein 428064..428525 Neorickettsia sennetsu str. Miyayama 3931859 YP_506392.1 CDS NSE_0508 NC_007798.1 428596 429180 R identified by match to protein family HMM PF01381; DNA-binding protein complement(428596..429180) Neorickettsia sennetsu str. Miyayama 3931893 YP_506393.1 CDS NSE_0509 NC_007798.1 429441 430142 D identified by similarity to SP:P30962; match to protein family HMM PF01578; match to protein family HMM TIGR01191; CcmC family heme exporter protein 429441..430142 Neorickettsia sennetsu str. Miyayama 3931399 YP_506394.1 CDS pyrB NC_007798.1 430123 431001 D identified by similarity to SP:P05654; match to protein family HMM PF00185; match to protein family HMM PF02729; aspartate carbamoyltransferase 430123..431001 Neorickettsia sennetsu str. Miyayama 3931661 YP_506395.1 CDS NSE_0511 NC_007798.1 431551 433134 D hypothetical protein 431551..433134 Neorickettsia sennetsu str. Miyayama 3931904 YP_506396.1 CDS pleD NC_007798.1 433470 434840 R involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP; response regulator PleD complement(433470..434840) Neorickettsia sennetsu str. Miyayama 3931788 YP_506397.1 CDS NSE_0513 NC_007798.1 434896 435171 R identified by similarity to GB:AAS13966.1; hypothetical protein complement(434896..435171) Neorickettsia sennetsu str. Miyayama 3931773 YP_506398.1 CDS NSE_0514 NC_007798.1 435176 439936 R identified by match to protein family HMM PF05088; NAD-glutamate dehydrogenase family protein complement(435176..439936) Neorickettsia sennetsu str. Miyayama 3931535 YP_506399.1 CDS NSE_0515 NC_007798.1 439915 440040 D hypothetical protein 439915..440040 Neorickettsia sennetsu str. Miyayama 3931350 YP_506400.1 CDS NSE_0516 NC_007798.1 440165 440440 D putative glutamyl-tRNA(Gln) amidotransferase subunit C 440165..440440 Neorickettsia sennetsu str. Miyayama 3932232 YP_506401.1 CDS NSE_0517 NC_007798.1 440529 440711 D putative lipoprotein 440529..440711 Neorickettsia sennetsu str. Miyayama 3931817 YP_506402.1 CDS gltX-1 NC_007798.1 441445 442746 R identified by similarity to SP:P45631; match to protein family HMM PF00749; glutamyl-tRNA synthetase complement(441445..442746) Neorickettsia sennetsu str. Miyayama 3931642 YP_506403.1 CDS NSE_0519 NC_007798.1 442743 443219 R identified by similarity to GB:CAD72092.1; hypothetical protein complement(442743..443219) Neorickettsia sennetsu str. Miyayama 3932028 YP_506404.1 CDS nrdF NC_007798.1 443212 444180 R B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta complement(443212..444180) Neorickettsia sennetsu str. Miyayama 3932158 YP_506405.1 CDS nusA NC_007798.1 444417 446030 D identified by similarity to SP:P03003; match to protein family HMM PF00013; match to protein family HMM TIGR01953; match to protein family HMM TIGR01954; N utilization substance protein A 444417..446030 Neorickettsia sennetsu str. Miyayama 3931612 YP_506406.1 CDS infB NC_007798.1 446040 448379 D identified by similarity to SP:P17889; match to protein family HMM PF00009; match to protein family HMM PF01926; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00487; translation initiation factor IF-2 446040..448379 Neorickettsia sennetsu str. Miyayama 3931786 YP_506407.1 CDS NSE_0523 NC_007798.1 448388 448681 D identified by similarity to SP:Q8XJR9; putative ribosome-binding factor A 448388..448681 Neorickettsia sennetsu str. Miyayama 3931498 YP_506408.1 CDS NSE_0524 NC_007798.1 448653 450992 D identified by similarity to GB:AAS14586.1; hypothetical protein 448653..450992 Neorickettsia sennetsu str. Miyayama 3931808 YP_506409.1 CDS guaB NC_007798.1 451188 452633 D identified by similarity to SP:P06981; match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM PF03060; match to protein family HMM TIGR01302; inosine-5'-monophosphate dehydrogenase 451188..452633 Neorickettsia sennetsu str. Miyayama 3931512 YP_506410.1 CDS NSE_0526 NC_007798.1 452751 455075 D hypothetical protein 452751..455075 Neorickettsia sennetsu str. Miyayama 3932285 YP_506411.1 CDS NSE_0527 NC_007798.1 455068 455505 R identified by match to protein family HMM PF02470; mce-like protein complement(455068..455505) Neorickettsia sennetsu str. Miyayama 3931421 YP_506412.1 CDS NSE_0528 NC_007798.1 455525 455836 R hypothetical protein complement(455525..455836) Neorickettsia sennetsu str. Miyayama 3932307 YP_506413.1 CDS NSE_0529 NC_007798.1 455796 456416 R identified by match to protein family HMM PF01612; 3'-5' exonuclease family protein complement(455796..456416) Neorickettsia sennetsu str. Miyayama 3931905 YP_506414.1 CDS recA NC_007798.1 456455 457438 R identified by similarity to SP:P41079; match to protein family HMM PF00154; match to protein family HMM TIGR02012; recA protein complement(456455..457438) Neorickettsia sennetsu str. Miyayama 3931948 YP_506415.1 CDS NSE_0531 NC_007798.1 457473 459203 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 457473..459203 Neorickettsia sennetsu str. Miyayama 3931578 YP_506416.1 CDS NSE_0533 NC_007798.1 459382 459480 R hypothetical protein complement(459382..459480) Neorickettsia sennetsu str. Miyayama 3932163 YP_506417.1 CDS sdhB NC_007798.1 459627 460391 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(459627..460391) Neorickettsia sennetsu str. Miyayama 3932205 YP_506418.1 CDS dnaJ NC_007798.1 460669 461808 D identified by similarity to SP:P08622; match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; match to protein family HMM TIGR02349; chaperone protein DnaJ 460669..461808 Neorickettsia sennetsu str. Miyayama 3932277 YP_506419.1 CDS NSE_0536 NC_007798.1 461878 463299 R identified by similarity to SP:P77254; match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00650; putative GTP-binding protein EngA complement(461878..463299) Neorickettsia sennetsu str. Miyayama 3931630 YP_506420.1 CDS ileS NC_007798.1 463967 467104 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 463967..467104 Neorickettsia sennetsu str. Miyayama 3932146 YP_506421.1 CDS pyrE NC_007798.1 467107 467727 D identified by match to protein family HMM PF00156; match to protein family HMM TIGR01367; orotate phosphoribosyltransferase 467107..467727 Neorickettsia sennetsu str. Miyayama 3931602 YP_506422.1 CDS NSE_0539 NC_007798.1 467891 468922 D hypothetical protein 467891..468922 Neorickettsia sennetsu str. Miyayama 3931458 YP_506423.1 CDS ffh NC_007798.1 469013 470362 R identified by similarity to SP:P37105; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; signal recognition particle protein complement(469013..470362) Neorickettsia sennetsu str. Miyayama 3931977 YP_506424.1 CDS NSE_0541 NC_007798.1 470369 471850 R hypothetical protein complement(470369..471850) Neorickettsia sennetsu str. Miyayama 3931396 YP_506425.1 CDS NSE_0542 NC_007798.1 471847 472497 R identified by match to protein family HMM PF06271; RDD family protein complement(471847..472497) Neorickettsia sennetsu str. Miyayama 3932276 YP_506426.1 CDS NSE_0543 NC_007798.1 472503 473567 R hypothetical protein complement(472503..473567) Neorickettsia sennetsu str. Miyayama 3931372 YP_506427.1 CDS fabK NC_007798.1 473685 474665 R identified by match to protein family HMM PF03060; enoyl-(acyl-carrier-protein) reductase II complement(473685..474665) Neorickettsia sennetsu str. Miyayama 3931464 YP_506428.1 CDS ftsY NC_007798.1 474851 475780 D identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY 474851..475780 Neorickettsia sennetsu str. Miyayama 3931766 YP_506429.1 CDS rrmJ NC_007798.1 475908 476549 R identified by similarity to SP:P28692; match to protein family HMM PF01728; ribosomal RNA large subunit methyltransferase J complement(475908..476549) Neorickettsia sennetsu str. Miyayama 3932156 YP_506430.1 CDS tmk NC_007798.1 476521 477120 R identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041; thymidylate kinase complement(476521..477120) Neorickettsia sennetsu str. Miyayama 3931989 YP_506431.1 CDS sucB NC_007798.1 477331 478614 R identified by similarity to SP:P52993; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01347; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase complement(477331..478614) Neorickettsia sennetsu str. Miyayama 3931850 YP_506432.1 CDS pmbA NC_007798.1 478825 480198 D identified by similarity to SP:P24231; match to protein family HMM PF01523; pmbA protein 478825..480198 Neorickettsia sennetsu str. Miyayama 3932112 YP_506433.1 CDS NSE_0550 NC_007798.1 480332 480502 R hypothetical protein complement(480332..480502) Neorickettsia sennetsu str. Miyayama 3931719 YP_506434.1 CDS NSE_0551 NC_007798.1 480515 481075 D identified by match to protein family HMM PF02630; major surface protein 480515..481075 Neorickettsia sennetsu str. Miyayama 3931686 YP_506435.1 CDS dnaB NC_007798.1 481270 482754 D identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665; replicative DNA helicase 481270..482754 Neorickettsia sennetsu str. Miyayama 3931610 YP_506436.1 CDS NSE_0554 NC_007798.1 482826 483344 R identified by match to protein family HMM PF04586; match to protein family HMM TIGR01543; HK97 family phage prohead protease complement(482826..483344) Neorickettsia sennetsu str. Miyayama 3932119 YP_506437.1 CDS NSE_0555 NC_007798.1 483485 483598 R hypothetical protein complement(483485..483598) Neorickettsia sennetsu str. Miyayama 3932006 YP_506438.1 CDS rluC NC_007798.1 483642 484559 R identified by similarity to SP:P23851; match to protein family HMM PF00849; match to protein family HMM PF01479; ribosomal large subunit pseudouridine synthase C complement(483642..484559) Neorickettsia sennetsu str. Miyayama 3931346 YP_506439.1 CDS NSE_0557 NC_007798.1 484534 484653 R hypothetical protein complement(484534..484653) Neorickettsia sennetsu str. Miyayama 3932302 YP_506440.1 CDS trxB NC_007798.1 484685 485629 R identified by similarity to SP:P09625; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase complement(484685..485629) Neorickettsia sennetsu str. Miyayama 3932011 YP_506441.1 CDS NSE_0559 NC_007798.1 485636 486238 R identified by similarity to GB:AAM00601.1; match to protein family HMM PF00578; anti-oxidant AhpCTSA family protein complement(485636..486238) Neorickettsia sennetsu str. Miyayama 3931575 YP_506442.1 CDS ndk NC_007798.1 486392 486811 R identified by similarity to SP:Q59636; match to protein family HMM PF00334; nucleoside diphosphate kinase complement(486392..486811) Neorickettsia sennetsu str. Miyayama 3932166 YP_506443.1 CDS NSE_0561 NC_007798.1 487205 488716 D identified by match to protein family HMM PF03023; MviN family membrane protein 487205..488716 Neorickettsia sennetsu str. Miyayama 3932092 YP_506444.1 CDS NSE_0562 NC_007798.1 488865 488975 R hypothetical protein complement(488865..488975) Neorickettsia sennetsu str. Miyayama 3932081 YP_506445.1 CDS NSE_0563 NC_007798.1 488998 490425 D identified by match to protein family HMM PF00361; NADH-ubiquinone/plastoquinone oxidoreductase family protein 488998..490425 Neorickettsia sennetsu str. Miyayama 3931625 YP_506446.1 CDS NSE_0564 NC_007798.1 490534 491160 D hypothetical protein 490534..491160 Neorickettsia sennetsu str. Miyayama 3932172 YP_506447.1 CDS NSE_0565 NC_007798.1 491173 491685 R hypothetical protein complement(491173..491685) Neorickettsia sennetsu str. Miyayama 3932079 YP_506448.1 CDS nuoD NC_007798.1 491751 492917 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D complement(491751..492917) Neorickettsia sennetsu str. Miyayama 3931446 YP_506449.1 CDS NSE_0568 NC_007798.1 493452 493598 R hypothetical protein complement(493452..493598) Neorickettsia sennetsu str. Miyayama 3931519 YP_506450.1 CDS serS NC_007798.1 493675 494922 R identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414; seryl-tRNA synthetase complement(493675..494922) Neorickettsia sennetsu str. Miyayama 3932062 YP_506451.1 CDS miaA NC_007798.1 495140 496057 R identified by similarity to SP:P38436; match to protein family HMM PF01715; tRNA delta(2)-isopentenylpyrophosphate transferase complement(495140..496057) Neorickettsia sennetsu str. Miyayama 3932110 YP_506452.1 CDS NSE_0571 NC_007798.1 496071 496367 R hypothetical protein complement(496071..496367) Neorickettsia sennetsu str. Miyayama 3931767 YP_506453.1 CDS NSE_0572 NC_007798.1 496793 498628 D identified by similarity to SP:P33927; match to protein family HMM PF01578; CcmF/CcyK/CcsA family cytochrome c biogenesis protein 496793..498628 Neorickettsia sennetsu str. Miyayama 3931374 YP_506454.1 CDS NSE_0573 NC_007798.1 498625 499701 R hypothetical protein complement(498625..499701) Neorickettsia sennetsu str. Miyayama 3931703 YP_506455.1 CDS ruvA NC_007798.1 500346 500927 D identified by similarity to SP:P08576; match to protein family HMM PF01330; holliday junction DNA helicase RuvA 500346..500927 Neorickettsia sennetsu str. Miyayama 3931494 YP_506456.1 CDS ruvB NC_007798.1 501204 502199 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 501204..502199 Neorickettsia sennetsu str. Miyayama 3931683 YP_506457.1 CDS NSE_0576 NC_007798.1 502182 502415 R hypothetical protein complement(502182..502415) Neorickettsia sennetsu str. Miyayama 3932259 YP_506458.1 CDS NSE_0577 NC_007798.1 502361 502465 D hypothetical protein 502361..502465 Neorickettsia sennetsu str. Miyayama 3931356 YP_506459.1 CDS sucA NC_007798.1 502462 505179 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component complement(502462..505179) Neorickettsia sennetsu str. Miyayama 3931436 YP_506460.1 CDS NSE_0579 NC_007798.1 505364 505951 R identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein complement(505364..505951) Neorickettsia sennetsu str. Miyayama 3931732 YP_506461.1 CDS NSE_0580 NC_007798.1 505948 506742 R identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein complement(505948..506742) Neorickettsia sennetsu str. Miyayama 3931558 YP_506462.1 CDS NSE_0581 NC_007798.1 506739 506942 R identified by similarity to GB:AAS14115.1; match to protein family HMM PF04384; hypothetical protein complement(506739..506942) Neorickettsia sennetsu str. Miyayama 3931375 YP_506463.1 CDS rpsD NC_007798.1 507288 507905 R identified by similarity to SP:P81288; match to protein family HMM PF01479; match to protein family HMM TIGR01017; 30S ribosomal protein S4 complement(507288..507905) Neorickettsia sennetsu str. Miyayama 3931527 YP_506464.1 CDS NSE_0584 NC_007798.1 508090 508188 D hypothetical protein 508090..508188 Neorickettsia sennetsu str. Miyayama 3931916 YP_506465.1 CDS NSE_0585 NC_007798.1 508265 508801 D identified by similarity to SP:P16655; putative cell division protein 508265..508801 Neorickettsia sennetsu str. Miyayama 3931894 YP_506466.1 CDS NSE_0586 NC_007798.1 508902 509063 D hypothetical protein 508902..509063 Neorickettsia sennetsu str. Miyayama 3931597 YP_506467.1 CDS folE NC_007798.1 509055 509597 R identified by similarity to SP:O33723; match to protein family HMM PF01227; GTP cyclohydrolase I complement(509055..509597) Neorickettsia sennetsu str. Miyayama 3932033 YP_506468.1 CDS atpG NC_007798.1 509581 510390 R identified by match to protein family HMM PF00231; ATP synthase F1 subunit gamma complement(509581..510390) Neorickettsia sennetsu str. Miyayama 3932282 YP_506469.1 CDS NSE_0589 NC_007798.1 510437 510613 D hypothetical protein 510437..510613 Neorickettsia sennetsu str. Miyayama 3931797 YP_506470.1 CDS NSE_0590 NC_007798.1 510863 511711 R identified by similarity to SP:P18579; match to protein family HMM PF01565; putative UDP-N-acetylenolpyruvoylglucosamine reductase complement(510863..511711) Neorickettsia sennetsu str. Miyayama 3931934 YP_506471.1 CDS NSE_0591 NC_007798.1 511807 513279 D hypothetical protein 511807..513279 Neorickettsia sennetsu str. Miyayama 3932122 YP_506472.1 CDS glpX NC_007798.1 513388 514326 R type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II complement(513388..514326) Neorickettsia sennetsu str. Miyayama 3932202 YP_506473.1 CDS NSE_0593 NC_007798.1 514395 514529 R hypothetical protein complement(514395..514529) Neorickettsia sennetsu str. Miyayama 3931687 YP_506474.1 CDS topA NC_007798.1 514673 517156 R identified by similarity to SP:P39814; match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01051; DNA topoisomerase I complement(514673..517156) Neorickettsia sennetsu str. Miyayama 3931799 YP_506475.1 CDS NSE_0595 NC_007798.1 517194 517355 R hypothetical protein complement(517194..517355) Neorickettsia sennetsu str. Miyayama 3931490 YP_506476.1 CDS NSE_0596 NC_007798.1 517410 518708 R hypothetical protein complement(517410..518708) Neorickettsia sennetsu str. Miyayama 3932269 YP_506477.1 CDS NSE_0597 NC_007798.1 518832 518969 D hypothetical protein 518832..518969 Neorickettsia sennetsu str. Miyayama 3932154 YP_506478.1 CDS NSE_0598 NC_007798.1 519074 519703 R identified by match to protein family HMM PF01596; O-methyltransferase family protein complement(519074..519703) Neorickettsia sennetsu str. Miyayama 3931449 YP_506479.1 CDS NSE_0599 NC_007798.1 519959 520057 D hypothetical protein 519959..520057 Neorickettsia sennetsu str. Miyayama 3931429 YP_506480.1 CDS acnA NC_007798.1 520109 522826 D identified by similarity to SP:P25516; match to protein family HMM PF00330; match to protein family HMM PF00694; match to protein family HMM TIGR01341; aconitate hydratase 1 520109..522826 Neorickettsia sennetsu str. Miyayama 3932178 YP_506481.1 CDS NSE_0601 NC_007798.1 523005 523976 R identified by similarity to GB:AAS14410.1; match to protein family HMM PF02636; hypothetical protein complement(523005..523976) Neorickettsia sennetsu str. Miyayama 3931466 YP_506482.1 CDS NSE_0602 NC_007798.1 524120 524221 R hypothetical protein complement(524120..524221) Neorickettsia sennetsu str. Miyayama 3932025 YP_506483.1 CDS NSE_0603 NC_007798.1 524240 526873 R identified by similarity to SP:Q05873; match to protein family HMM PF00133; putative valyl-tRNA synthetase complement(524240..526873) Neorickettsia sennetsu str. Miyayama 3931551 YP_506484.1 CDS prfB NC_007798.1 527159 528257 D identified by similarity to SP:P28353; match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020; peptide chain release factor 2, programmed frameshift join(527159..527227,527229..528257) Neorickettsia sennetsu str. Miyayama 3931929 YP_506485.1 CDS NSE_0605 NC_007798.1 528480 529865 D hypothetical protein 528480..529865 Neorickettsia sennetsu str. Miyayama 3931395 YP_506486.1 CDS NSE_0606 NC_007798.1 529846 529974 R hypothetical protein complement(529846..529974) Neorickettsia sennetsu str. Miyayama 3931596 YP_506487.1 CDS NSE_0607 NC_007798.1 530071 532332 D hypothetical protein 530071..532332 Neorickettsia sennetsu str. Miyayama 3931794 YP_506488.1 CDS NSE_0608 NC_007798.1 532335 532442 D hypothetical protein 532335..532442 Neorickettsia sennetsu str. Miyayama 3932141 YP_506489.1 CDS mutL NC_007798.1 532652 534610 D identified by similarity to SP:P14160; match to protein family HMM PF01119; match to protein family HMM PF02518; match to protein family HMM TIGR00585; MutL/HexB family DNA mismatch repair protein 532652..534610 Neorickettsia sennetsu str. Miyayama 3931746 YP_506490.1 CDS NSE_0610 NC_007798.1 534585 534707 D hypothetical protein 534585..534707 Neorickettsia sennetsu str. Miyayama 3931783 YP_506491.1 CDS NSE_0611 NC_007798.1 534762 534890 R hypothetical protein complement(534762..534890) Neorickettsia sennetsu str. Miyayama 3932106 YP_506492.1 CDS bioB NC_007798.1 534862 535863 R identified by similarity to SP:P12996; match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433; biotin synthase complement(534862..535863) Neorickettsia sennetsu str. Miyayama 3931759 YP_506493.1 CDS bioF NC_007798.1 536418 537599 D identified by similarity to SP:P53556; match to protein family HMM PF00155; 8-amino-7-oxononanoate synthase 536418..537599 Neorickettsia sennetsu str. Miyayama 3931629 YP_506494.1 CDS NSE_0614 NC_007798.1 537596 538243 D hypothetical protein 537596..538243 Neorickettsia sennetsu str. Miyayama 3931745 YP_506495.1 CDS bioC NC_007798.1 538355 539107 R identified by similarity to SP:P12999; match to protein family HMM TIGR02072; biotin biosynthesis protein BioC complement(538355..539107) Neorickettsia sennetsu str. Miyayama 3932264 YP_506496.1 CDS NSE_0616 NC_007798.1 539139 539303 R hypothetical protein complement(539139..539303) Neorickettsia sennetsu str. Miyayama 3931842 YP_506497.1 CDS bioD NC_007798.1 539613 540362 D identified by similarity to SP:P53558; match to protein family HMM TIGR00347; dethiobiotin synthase 539613..540362 Neorickettsia sennetsu str. Miyayama 3931611 YP_506498.1 CDS bioA NC_007798.1 540562 541905 D identified by similarity to SP:P22805; match to protein family HMM PF00202; match to protein family HMM TIGR00508; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 540562..541905 Neorickettsia sennetsu str. Miyayama 3931479 YP_506499.1 CDS NSE_0620 NC_007798.1 542305 542535 D hypothetical protein 542305..542535 Neorickettsia sennetsu str. Miyayama 3932114 YP_506500.1 CDS NSE_0621 NC_007798.1 542756 543523 D identified by match to protein family HMM PF00116; match to protein family HMM PF02790; cytochrome c oxidase subunit II 542756..543523 Neorickettsia sennetsu str. Miyayama 3931717 YP_506501.1 CDS ctaD NC_007798.1 543552 545111 D identified by similarity to SP:Q08855; match to protein family HMM PF00115; cytochrome c oxidase subunit I 543552..545111 Neorickettsia sennetsu str. Miyayama 3931475 YP_506502.1 CDS cyoE NC_007798.1 545121 546029 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 545121..546029 Neorickettsia sennetsu str. Miyayama 3931532 YP_506503.1 CDS petA NC_007798.1 546044 546565 D identified by similarity to SP:P23136; match to protein family HMM PF00355; match to protein family HMM TIGR01409; match to protein family HMM TIGR01416; ubiquinol-cytochrome c reductase, iron-sulfur subunit 546044..546565 Neorickettsia sennetsu str. Miyayama 3931477 YP_506504.1 CDS petB NC_007798.1 546558 547790 D identified by similarity to SP:P23134; match to protein family HMM PF00032; match to protein family HMM PF00033; ubiquinol-cytochrome c reductase, cytochrome b 546558..547790 Neorickettsia sennetsu str. Miyayama 3931451 YP_506505.1 CDS petC NC_007798.1 547800 548570 D identified by match to protein family HMM PF02167; ubiquinol-cytochrome c reductase, cytochrome c1 547800..548570 Neorickettsia sennetsu str. Miyayama 3931640 YP_506506.1 CDS secD NC_007798.1 548627 550135 D identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR01129; protein-export membrane protein SecD 548627..550135 Neorickettsia sennetsu str. Miyayama 3931608 YP_506507.1 CDS ubiG NC_007798.1 550420 551112 R Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase complement(550420..551112) Neorickettsia sennetsu str. Miyayama 3931849 YP_506508.1 CDS fabH NC_007798.1 551656 552591 R identified by match to protein family HMM TIGR00747; 3-oxoacyl-(acyl-carrier-protein) synthase III complement(551656..552591) Neorickettsia sennetsu str. Miyayama 3931433 YP_506509.1 CDS NSE_0631 NC_007798.1 552631 552756 R hypothetical protein complement(552631..552756) Neorickettsia sennetsu str. Miyayama 3931711 YP_506510.1 CDS plsX NC_007798.1 553012 554043 R identified by similarity to SP:P71018; match to protein family HMM PF02504; match to protein family HMM TIGR00182; fatty acid/phospholipid synthesis protein PlsX complement(553012..554043) Neorickettsia sennetsu str. Miyayama 3932072 YP_506511.1 CDS rpmF NC_007798.1 554089 554280 R identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; 50S ribosomal protein L32 complement(554089..554280) Neorickettsia sennetsu str. Miyayama 3931714 YP_506512.1 CDS NSE_0634 NC_007798.1 554332 554463 R hypothetical protein complement(554332..554463) Neorickettsia sennetsu str. Miyayama 3932041 YP_506513.1 CDS NSE_0635 NC_007798.1 554526 557177 R hypothetical protein complement(554526..557177) Neorickettsia sennetsu str. Miyayama 3932000 YP_506514.1 CDS nuoE NC_007798.1 557420 557965 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E complement(557420..557965) Neorickettsia sennetsu str. Miyayama 3931340 YP_506515.1 CDS NSE_0637 NC_007798.1 557950 559326 R identified by similarity to SP:P27854; match to protein family HMM PF03109; putative ubiquinone biosynthesis protein complement(557950..559326) Neorickettsia sennetsu str. Miyayama 3932167 YP_506516.1 CDS NSE_0638 NC_007798.1 559592 560170 D identified by similarity to GB:AAS14721.1; hypothetical protein 559592..560170 Neorickettsia sennetsu str. Miyayama 3931862 YP_506517.1 CDS NSE_0639 NC_007798.1 560234 560359 D hypothetical protein 560234..560359 Neorickettsia sennetsu str. Miyayama 3931439 YP_506518.1 CDS hup NC_007798.1 560508 560789 D identified by similarity to SP:P02341; match to protein family HMM PF00216; DNA-binding protein HU 560508..560789 Neorickettsia sennetsu str. Miyayama 3931492 YP_506519.1 CDS NSE_0641 NC_007798.1 560830 561567 D identified by similarity to PIR:AC3292; match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 560830..561567 Neorickettsia sennetsu str. Miyayama 3932037 YP_506520.1 CDS groEL NC_007798.1 561722 563368 R identified by match to protein family HMM PF00118; match to protein family HMM TIGR02348; 60 kDa chaperonin complement(561722..563368) Neorickettsia sennetsu str. Miyayama 3931472 YP_506521.1 CDS groES NC_007798.1 563368 563664 R identified by match to protein family HMM PF00166; 10 kDa chaperonin complement(563368..563664) Neorickettsia sennetsu str. Miyayama 3932179 YP_506522.1 CDS NSE_0644 NC_007798.1 563811 564755 R hypothetical protein complement(563811..564755) Neorickettsia sennetsu str. Miyayama 3931662 YP_506523.1 CDS NSE_0645 NC_007798.1 564755 566539 R rotamase family protein complement(564755..566539) Neorickettsia sennetsu str. Miyayama 3931542 YP_506524.1 CDS NSE_0646 NC_007798.1 566524 567702 D identified by similarity to SP:P42977; match to protein family HMM PF01743; polyA polymerase family protein 566524..567702 Neorickettsia sennetsu str. Miyayama 3931972 YP_506525.1 CDS NSE_0647 NC_007798.1 567927 568637 R hypothetical protein complement(567927..568637) Neorickettsia sennetsu str. Miyayama 3931942 YP_506526.1 CDS NSE_0648 NC_007798.1 568321 568704 D hypothetical protein 568321..568704 Neorickettsia sennetsu str. Miyayama 3931814 YP_506527.1 CDS ribB NC_007798.1 569117 569749 R identified by match to protein family HMM PF00926; match to protein family HMM TIGR00506; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(569117..569749) Neorickettsia sennetsu str. Miyayama 3931973 YP_506528.1 CDS NSE_0650 NC_007798.1 570007 572436 D identified by match to protein family HMM PF01580; putative cell division protein FtsK 570007..572436 Neorickettsia sennetsu str. Miyayama 3931390 YP_506529.1 CDS NSE_0651 NC_007798.1 572581 573027 R putative lipoprotein complement(572581..573027) Neorickettsia sennetsu str. Miyayama 3931530 YP_506530.1 CDS NSE_0652 NC_007798.1 573682 573849 D hypothetical protein 573682..573849 Neorickettsia sennetsu str. Miyayama 3931499 YP_506531.1 CDS NSE_0653 NC_007798.1 573905 574333 D hypothetical protein 573905..574333 Neorickettsia sennetsu str. Miyayama 3931414 YP_506532.1 CDS NSE_0654 NC_007798.1 574330 574575 R hypothetical protein complement(574330..574575) Neorickettsia sennetsu str. Miyayama 3932020 YP_506533.1 CDS NSE_0655 NC_007798.1 574647 574877 D hypothetical protein 574647..574877 Neorickettsia sennetsu str. Miyayama 3931821 YP_506534.1 CDS NSE_0656 NC_007798.1 575151 575558 D hypothetical protein 575151..575558 Neorickettsia sennetsu str. Miyayama 3931909 YP_506535.1 CDS NSE_0657 NC_007798.1 575864 575971 D hypothetical protein 575864..575971 Neorickettsia sennetsu str. Miyayama 3931459 YP_506536.1 CDS NSE_0658 NC_007798.1 575957 576598 R identified by match to protein family HMM PF00583; acetyltransferase complement(575957..576598) Neorickettsia sennetsu str. Miyayama 3931731 YP_506537.1 CDS NSE_0659 NC_007798.1 576750 577163 R hypothetical protein complement(576750..577163) Neorickettsia sennetsu str. Miyayama 3931768 YP_506538.1 CDS NSE_0660 NC_007798.1 577418 577534 R hypothetical protein complement(577418..577534) Neorickettsia sennetsu str. Miyayama 3931427 YP_506539.1 CDS NSE_0661 NC_007798.1 577652 581383 R identified by similarity to PIR:E97700; match to protein family HMM PF00970; FAD-binding domain-containing protein complement(577652..581383) Neorickettsia sennetsu str. Miyayama 3931672 YP_506540.1 CDS NSE_0662 NC_007798.1 581296 581496 D hypothetical protein 581296..581496 Neorickettsia sennetsu str. Miyayama 3932236 YP_506541.1 CDS fabZ NC_007798.1 581656 582111 R identified by similarity to SP:P21774; match to protein family HMM PF07977; beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ complement(581656..582111) Neorickettsia sennetsu str. Miyayama 3932147 YP_506542.1 CDS NSE_0664 NC_007798.1 582118 582741 R hypothetical protein complement(582118..582741) Neorickettsia sennetsu str. Miyayama 3932080 YP_506543.1 CDS fabG NC_007798.1 582931 583671 R identified by similarity to SP:P25716; match to protein family HMM PF00106; 3-oxoacyl-[acyl-carrier protein] reductase complement(582931..583671) Neorickettsia sennetsu str. Miyayama 3931517 YP_506544.1 CDS NSE_0666 NC_007798.1 583717 583833 D hypothetical protein 583717..583833 Neorickettsia sennetsu str. Miyayama 3931969 YP_506545.1 CDS rnhA NC_007798.1 584101 584556 R identified by similarity to SP:P00647; match to protein family HMM PF00075; ribonuclease HI complement(584101..584556) Neorickettsia sennetsu str. Miyayama 3931461 YP_506546.1 CDS NSE_0668 NC_007798.1 584986 585708 R identified by similarity to GB:AAK22816.1; hypothetical protein complement(584986..585708) Neorickettsia sennetsu str. Miyayama 3932271 YP_506547.1 CDS greA NC_007798.1 585762 586241 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(585762..586241) Neorickettsia sennetsu str. Miyayama 3931739 YP_506548.1 CDS NSE_0670 NC_007798.1 586222 586410 D hypothetical protein 586222..586410 Neorickettsia sennetsu str. Miyayama 3931829 YP_506549.1 CDS lpdA-2 NC_007798.1 586511 587917 D identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01350; dihydrolipoamide dehydrogenase 586511..587917 Neorickettsia sennetsu str. Miyayama 3931509 YP_506550.1 CDS NSE_0672 NC_007798.1 587934 588491 R hypothetical protein complement(587934..588491) Neorickettsia sennetsu str. Miyayama 3931899 YP_506551.1 CDS typA NC_007798.1 588599 590389 R identified by similarity to SP:Q9EXN7; match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; GTP-binding protein TypA complement(588599..590389) Neorickettsia sennetsu str. Miyayama 3932206 YP_506552.1 CDS NSE_0674 NC_007798.1 590382 590546 R hypothetical protein complement(590382..590546) Neorickettsia sennetsu str. Miyayama 3932032 YP_506553.1 CDS polA NC_007798.1 590702 593191 D identified by similarity to SP:O34996; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593; DNA polymerase I 590702..593191 Neorickettsia sennetsu str. Miyayama 3932157 YP_506554.1 CDS NSE_0676 NC_007798.1 593233 594057 R identified by match to protein family HMM PF00510; cytochrome c oxidase subunit III complement(593233..594057) Neorickettsia sennetsu str. Miyayama 3931648 YP_506555.1 CDS rpoC NC_007798.1 594093 598220 R identified by similarity to SP:Q9ZE20; match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000; match to protein family HMM TIGR02386; DNA-directed RNA polymerase subunit beta' complement(594093..598220) Neorickettsia sennetsu str. Miyayama 3931848 YP_506556.1 CDS rpoB NC_007798.1 598275 602351 R identified by similarity to GB:AAP75727.1; match to protein family HMM PF00562; match to protein family HMM PF04560; match to protein family HMM PF04561; match to protein family HMM PF04565; match to protein family HMM TIGR02013; DNA-directed RNA polymerase subunit beta complement(598275..602351) Neorickettsia sennetsu str. Miyayama 3931355 YP_506557.1 CDS rplL NC_007798.1 602388 602801 R identified by similarity to SP:P29396; match to protein family HMM PF00542; 50S ribosomal protein L7/L12 complement(602388..602801) Neorickettsia sennetsu str. Miyayama 3931550 YP_506558.1 CDS rplJ NC_007798.1 602843 603367 R identified by match to protein family HMM PF00466; 50S ribosomal protein L10 complement(602843..603367) Neorickettsia sennetsu str. Miyayama 3932078 YP_506559.1 CDS rplA NC_007798.1 603379 604008 R identified by similarity to SP:P04447; match to protein family HMM PF00687; 50S ribosomal protein L1 complement(603379..604008) Neorickettsia sennetsu str. Miyayama 3932130 YP_506560.1 CDS rplK NC_007798.1 604010 604432 R identified by similarity to SP:P29395; match to protein family HMM PF03946; 50S ribosomal protein L11 complement(604010..604432) Neorickettsia sennetsu str. Miyayama 3931369 YP_506561.1 CDS NSE_0683 NC_007798.1 604461 604991 R identified by similarity to SP:P16921; putative transcription termination/antitermination factor NusG complement(604461..604991) Neorickettsia sennetsu str. Miyayama 3931733 YP_506562.1 CDS secE NC_007798.1 604996 605178 R identified by similarity to SP:Q06799; match to protein family HMM PF00584; match to protein family HMM TIGR00964; preprotein translocase subunit SecE complement(604996..605178) Neorickettsia sennetsu str. Miyayama 3931440 YP_506563.1 CDS tuf NC_007798.1 605262 606554 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(605262..606554) Neorickettsia sennetsu str. Miyayama 3931520 YP_506564.1 CDS fusA NC_007798.1 606585 608663 R identified by similarity to SP:P41084; match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231; match to protein family HMM TIGR00484; translation elongation factor G complement(606585..608663) Neorickettsia sennetsu str. Miyayama 3932067 YP_506565.1 CDS rpsG NC_007798.1 608672 609199 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(608672..609199) Neorickettsia sennetsu str. Miyayama 3932103 YP_506566.2 CDS rpsL NC_007798.1 609211 609579 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(609211..609579) Neorickettsia sennetsu str. Miyayama 3932187 YP_506567.1 CDS recG NC_007798.1 609646 611673 R identified by similarity to SP:Q54900; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; ATP-dependent DNA helicase RecG complement(609646..611673) Neorickettsia sennetsu str. Miyayama 3931634 YP_506568.1 CDS nuoM NC_007798.1 611895 613256 D identified by similarity to SP:P29925; match to protein family HMM PF00361; match to protein family HMM TIGR01972; NADH dehydrogenase I subunit M 611895..613256 Neorickettsia sennetsu str. Miyayama 3932001 YP_506569.1 CDS nuoN NC_007798.1 613253 614629 D identified by similarity to SP:P50973; match to protein family HMM PF00361; NADH dehydrogenase I subunit N 613253..614629 Neorickettsia sennetsu str. Miyayama 3931603 YP_506570.1 CDS NSE_0693 NC_007798.1 614856 615536 D identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM TIGR00121; biotin--acetyl-CoA-carboxylase ligase 614856..615536 Neorickettsia sennetsu str. Miyayama 3931744 YP_506571.1 CDS NSE_0694 NC_007798.1 615713 616483 D identified by similarity to SP:O66126; match to protein family HMM PF00348; putative geranyltranstransferase 615713..616483 Neorickettsia sennetsu str. Miyayama 3931424 YP_506572.1 CDS NSE_0696 NC_007798.1 617009 617827 R identified by similarity to SP:P78061; match to protein family HMM PF00120; glutamine synthetase domain-containing protein complement(617009..617827) Neorickettsia sennetsu str. Miyayama 3931666 YP_506573.1 CDS NSE_0697 NC_007798.1 617994 618746 D identified by similarity to PIR:A97716; match to protein family HMM PF02405; putative ABC transporter permease 617994..618746 Neorickettsia sennetsu str. Miyayama 3931727 YP_506574.1 CDS NSE_0698 NC_007798.1 618736 619464 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 618736..619464 Neorickettsia sennetsu str. Miyayama 3931787 YP_506575.1 CDS NSE_0699 NC_007798.1 619457 620374 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 619457..620374 Neorickettsia sennetsu str. Miyayama 3931860 YP_506576.1 CDS NSE_0700 NC_007798.1 620512 620931 R identified by similarity to SP:Q9ZED0; match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein complement(620512..620931) Neorickettsia sennetsu str. Miyayama 3931363 YP_506577.1 CDS rnhB NC_007798.1 621093 621680 D identified by similarity to SP:P10442; match to protein family HMM PF01351; ribonuclease HII 621093..621680 Neorickettsia sennetsu str. Miyayama 3931613 YP_506578.1 CDS NSE_0702 NC_007798.1 621682 621807 D hypothetical protein 621682..621807 Neorickettsia sennetsu str. Miyayama 3932098 YP_506579.1 CDS NSE_0703 NC_007798.1 621872 622339 D hypothetical protein 621872..622339 Neorickettsia sennetsu str. Miyayama 3931658 YP_506580.1 CDS NSE_0704 NC_007798.1 622578 624836 D identified by similarity to SP:P51010; match to protein family HMM PF00456; match to protein family HMM PF02779; transketolase, insertion 622578..624836 Neorickettsia sennetsu str. Miyayama 3932265 YP_506581.1 CDS NSE_0705 NC_007798.1 624915 625007 D hypothetical protein 624915..625007 Neorickettsia sennetsu str. Miyayama 3931417 YP_506582.1 CDS NSE_0706 NC_007798.1 625046 626422 D identified by match to protein family HMM PF00361; NADH-ubiquinone/plastoquinone oxidoreductase family protein 625046..626422 Neorickettsia sennetsu str. Miyayama 3932295 YP_506583.1 CDS gidA NC_007798.1 626414 628297 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(626414..628297) Neorickettsia sennetsu str. Miyayama 3932258 YP_506584.1 CDS NSE_0708 NC_007798.1 628297 628917 R hypothetical protein complement(628297..628917) Neorickettsia sennetsu str. Miyayama 3931694 YP_506585.1 CDS NSE_0709 NC_007798.1 629009 629338 D identified by similarity to GB:AAS14667.1; hypothetical protein 629009..629338 Neorickettsia sennetsu str. Miyayama 3931939 YP_506586.1 CDS NSE_0710 NC_007798.1 629429 629944 D identified by similarity to GB:BAB53707.1; match to protein family HMM PF03548; hypothetical protein 629429..629944 Neorickettsia sennetsu str. Miyayama 3931736 YP_506587.1 CDS NSE_0711 NC_007798.1 630340 630876 D identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; putative nicotinate (nicotinamide) nucleotide adenylyltransferase 630340..630876 Neorickettsia sennetsu str. Miyayama 3931724 YP_506588.1 CDS recJ NC_007798.1 631369 633102 D identified by similarity to GB:AAA62789.1; match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 631369..633102 Neorickettsia sennetsu str. Miyayama 3931474 YP_506589.1 CDS NSE_0713 NC_007798.1 633366 633470 R hypothetical protein complement(633366..633470) Neorickettsia sennetsu str. Miyayama 3931810 YP_506590.1 CDS nuoF NC_007798.1 633479 634720 D part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 633479..634720 Neorickettsia sennetsu str. Miyayama 3932076 YP_506591.1 CDS folC NC_007798.1 634781 636109 R identified by similarity to SP:Q05865; match to protein family HMM TIGR01499; folylpolyglutamate synthase complement(634781..636109) Neorickettsia sennetsu str. Miyayama 3932241 YP_506592.1 CDS NSE_0716 NC_007798.1 636138 636353 D hypothetical protein 636138..636353 Neorickettsia sennetsu str. Miyayama 3931867 YP_506593.1 CDS trmE NC_007798.1 636509 638161 R identified by similarity to SP:P25522; match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00450; match to protein family HMM TIGR00650; tRNA modification GTPase TrmE complement(636509..638161) Neorickettsia sennetsu str. Miyayama 3931628 YP_506594.1 CDS NSE_0718 NC_007798.1 638165 640399 R identified by match to protein family HMM PF01103; match to protein family HMM PF07244; OMP85 family outer membrane protein complement(638165..640399) Neorickettsia sennetsu str. Miyayama 3932170 YP_506595.1 CDS NSE_0719 NC_007798.1 640403 641503 R identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054; putative membrane-associated zinc metalloprotease complement(640403..641503) Neorickettsia sennetsu str. Miyayama 3931923 YP_506596.1 CDS NSE_0720 NC_007798.1 641711 642550 R identified by match to protein family HMM PF00288; putative 4-diphosphocytidyl-2C-methyl-D-erythritol kinase complement(641711..642550) Neorickettsia sennetsu str. Miyayama 3931979 YP_506597.1 CDS gyrB NC_007798.1 642578 644929 R identified by similarity to SP:P06982; match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059; DNA gyrase subunit B complement(642578..644929) Neorickettsia sennetsu str. Miyayama 3932056 YP_506598.1 CDS NSE_0722 NC_007798.1 645080 645178 R hypothetical protein complement(645080..645178) Neorickettsia sennetsu str. Miyayama 3931722 YP_506599.1 CDS bcp NC_007798.1 645288 645776 D identified by match to protein family HMM PF00578; bacterioferritin comigratory protein 645288..645776 Neorickettsia sennetsu str. Miyayama 3932012 YP_506600.1 CDS NSE_0724 NC_007798.1 645945 647351 D identified by similarity to PIR:T48676; match to protein family HMM PF00474; putative sodium:proline symporter 645945..647351 Neorickettsia sennetsu str. Miyayama 3931533 YP_506601.1 CDS NSE_0725 NC_007798.1 647332 649038 D identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 647332..649038 Neorickettsia sennetsu str. Miyayama 3931927 YP_506602.1 CDS gmk NC_007798.1 649064 649684 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 649064..649684 Neorickettsia sennetsu str. Miyayama 3931826 YP_506603.1 CDS NSE_0727 NC_007798.1 649735 649923 R hypothetical protein complement(649735..649923) Neorickettsia sennetsu str. Miyayama 3931682 YP_506604.1 CDS NSE_0728 NC_007798.1 650089 650205 R hypothetical protein complement(650089..650205) Neorickettsia sennetsu str. Miyayama 3931412 YP_506605.1 CDS NSE_0729 NC_007798.1 650226 651071 R hypothetical protein complement(650226..651071) Neorickettsia sennetsu str. Miyayama 3931858 YP_506606.1 CDS gltA NC_007798.1 651157 652353 D identified by similarity to SP:P51042; match to protein family HMM PF00285; citrate synthase 651157..652353 Neorickettsia sennetsu str. Miyayama 3932016 YP_506607.1 CDS NSE_0731 NC_007798.1 652317 652538 R hypothetical protein complement(652317..652538) Neorickettsia sennetsu str. Miyayama 3932039 YP_506608.1 CDS NSE_0732 NC_007798.1 652516 653439 R hypothetical protein complement(652516..653439) Neorickettsia sennetsu str. Miyayama 3931937 YP_506609.1 CDS eno NC_007798.1 653439 654680 R identified by similarity to SP:P37869; match to protein family HMM PF00113; match to protein family HMM PF03952; match to protein family HMM TIGR01060; enolase complement(653439..654680) Neorickettsia sennetsu str. Miyayama 3932036 YP_506610.1 CDS ppa NC_007798.1 654760 655278 D identified by similarity to SP:P17288; match to protein family HMM PF00719; inorganic pyrophosphatase 654760..655278 Neorickettsia sennetsu str. Miyayama 3932133 YP_506611.1 CDS NSE_0735 NC_007798.1 655545 656363 R identified by similarity to GB:AAS14435.1; hypothetical protein complement(655545..656363) Neorickettsia sennetsu str. Miyayama 3931791 YP_506612.1 CDS NSE_0736 NC_007798.1 656369 656461 R hypothetical protein complement(656369..656461) Neorickettsia sennetsu str. Miyayama 3932084 YP_506613.1 CDS gltX-2 NC_007798.1 656477 657706 R identified by similarity to SP:P04805; match to protein family HMM PF00749; match to protein family HMM TIGR00464; glutamyl-tRNA synthetase complement(656477..657706) Neorickettsia sennetsu str. Miyayama 3931573 YP_506614.1 CDS NSE_0738 NC_007798.1 657802 658377 R identified by similarity to SP:O66905; match to protein family HMM PF02660; hypothetical protein complement(657802..658377) Neorickettsia sennetsu str. Miyayama 3931501 YP_506615.1 CDS virD4 NC_007798.1 658571 660496 R identified by similarity to GB:AAM00416.1; match to protein family HMM PF02534; type IV secretion system component VirD4 complement(658571..660496) Neorickettsia sennetsu str. Miyayama 3931944 YP_506616.1 CDS virB11 NC_007798.1 660527 661522 R identified by similarity to GB:AAM00414.1; match to protein family HMM PF00437; type IV secretion system ATPase VirB11 complement(660527..661522) Neorickettsia sennetsu str. Miyayama 3932270 YP_506617.1 CDS virB10 NC_007798.1 661528 662901 R identified by similarity to GB:AAM00413.1; match to protein family HMM PF03743; type IV secretion system protein VirB10 complement(661528..662901) Neorickettsia sennetsu str. Miyayama 3932221 YP_506618.1 CDS virB9-2 NC_007798.1 662908 663630 R identified by similarity to GB:AAM00421.1; match to protein family HMM PF03524; type IV secretion system protein VirB9 complement(662908..663630) Neorickettsia sennetsu str. Miyayama 3932281 YP_506619.1 CDS virB8-2 NC_007798.1 663617 664294 R identified by similarity to GB:AAM00420.1; match to protein family HMM PF04335; type IV secretion system protein VirB8 complement(663617..664294) Neorickettsia sennetsu str. Miyayama 3932083 YP_506620.1 CDS NSE_0744 NC_007798.1 664338 664511 R hypothetical protein complement(664338..664511) Neorickettsia sennetsu str. Miyayama 3931565 YP_506621.1 CDS ribA NC_007798.1 664568 665629 R identified by similarity to SP:P43525; match to protein family HMM PF00925; match to protein family HMM TIGR00505; GTP cyclohydrolase II complement(664568..665629) Neorickettsia sennetsu str. Miyayama 3931779 YP_506622.1 CDS NSE_0746 NC_007798.1 665846 666844 D catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acyltransferase within the complex. The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2); it contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase; pyruvate dehydrogenase subunit beta 665846..666844 Neorickettsia sennetsu str. Miyayama 3931750 YP_506623.1 CDS NSE_0747 NC_007798.1 667003 667134 R hypothetical protein complement(667003..667134) Neorickettsia sennetsu str. Miyayama 3931940 YP_506624.1 CDS NSE_0748 NC_007798.1 667199 667462 D hypothetical protein 667199..667462 Neorickettsia sennetsu str. Miyayama 3932254 YP_506625.1 CDS NSE_0749 NC_007798.1 667645 667968 D hypothetical protein 667645..667968 Neorickettsia sennetsu str. Miyayama 3932301 YP_506626.1 CDS NSE_0751 NC_007798.1 668086 669387 D identified by similarity to SP:P22257; match to protein family HMM PF00254; putative trigger factor 668086..669387 Neorickettsia sennetsu str. Miyayama 3931684 YP_506627.1 CDS clpP NC_007798.1 669394 670029 D identified by similarity to SP:P19245; match to protein family HMM PF00574; ATP-dependent Clp protease, proteolytic subunit ClpP 669394..670029 Neorickettsia sennetsu str. Miyayama 3931620 YP_506628.1 CDS clpX NC_007798.1 670013 671215 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 670013..671215 Neorickettsia sennetsu str. Miyayama 3931978 YP_506629.1 CDS NSE_0754 NC_007798.1 671212 671406 R hypothetical protein complement(671212..671406) Neorickettsia sennetsu str. Miyayama 3931460 YP_506630.1 CDS NSE_0755 NC_007798.1 672044 672343 D identified by similarity to GB:AAS14513.1; hypothetical protein 672044..672343 Neorickettsia sennetsu str. Miyayama 3931702 YP_506631.1 CDS glyS NC_007798.1 672338 674428 R identified by similarity to SP:P00961; match to protein family HMM PF02092; match to protein family HMM PF05746; match to protein family HMM TIGR00211; glycyl-tRNA synthetase subunit beta complement(672338..674428) Neorickettsia sennetsu str. Miyayama 3932153 YP_506632.1 CDS glyQ NC_007798.1 674421 675338 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(674421..675338) Neorickettsia sennetsu str. Miyayama 3931455 YP_506633.1 CDS NSE_0758 NC_007798.1 675374 676567 R identified by similarity to SP:Q02635; match to protein family HMM PF00155; aspartate aminotransferase complement(675374..676567) Neorickettsia sennetsu str. Miyayama 3931896 YP_506634.1 CDS ssb NC_007798.1 676858 677313 D identified by similarity to SP:P02339; match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein 676858..677313 Neorickettsia sennetsu str. Miyayama 3931638 YP_506635.1 CDS NSE_0760 NC_007798.1 677454 678044 R identified by similarity to GB:AAS14534.1; match to protein family HMM TIGR02396; hypothetical protein complement(677454..678044) Neorickettsia sennetsu str. Miyayama 3931405 YP_506636.1 CDS NSE_0761 NC_007798.1 678060 678704 R identified by similarity to SP:P19669; match to protein family HMM PF00923; match to protein family HMM TIGR00875; putative transaldolase complement(678060..678704) Neorickettsia sennetsu str. Miyayama 3932171 YP_506637.1 CDS atpC NC_007798.1 678708 679043 R identified by similarity to PIR:S29042; match to protein family HMM PF02823; ATP synthase F1 subunit epsilon complement(678708..679043) Neorickettsia sennetsu str. Miyayama 3931938 YP_506638.1 CDS atpD NC_007798.1 679044 680468 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(679044..680468) Neorickettsia sennetsu str. Miyayama 3931569 YP_506639.1 CDS NSE_0764 NC_007798.1 680526 680636 R hypothetical protein complement(680526..680636) Neorickettsia sennetsu str. Miyayama 3931855 YP_506640.1 CDS NSE_0765 NC_007798.1 680608 683121 R hypothetical protein complement(680608..683121) Neorickettsia sennetsu str. Miyayama 3931796 YP_506641.1 CDS virB4-1 NC_007798.1 683112 685364 R identified by similarity to GB:AAM00400.1; type IV secretion system protein VirB4 complement(683112..685364) Neorickettsia sennetsu str. Miyayama 3932022 YP_506642.1 CDS NSE_0767 NC_007798.1 685354 685494 R hypothetical protein complement(685354..685494) Neorickettsia sennetsu str. Miyayama 3932216 YP_506643.1 CDS NSE_0768 NC_007798.1 685452 685817 R identified by similarity to SP:P17792; putative type IV secretion system protein VirB2 complement(685452..685817) Neorickettsia sennetsu str. Miyayama 3932199 YP_506644.1 CDS NSE_0769 NC_007798.1 685895 686071 R hypothetical protein complement(685895..686071) Neorickettsia sennetsu str. Miyayama 3932023 YP_506645.1 CDS virB2 NC_007798.1 686029 686376 R identified by similarity to SP:P17792; type IV secretion system protein VirB2 complement(686029..686376) Neorickettsia sennetsu str. Miyayama 3932140 YP_506646.1 CDS lepA NC_007798.1 686562 688352 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(686562..688352) Neorickettsia sennetsu str. Miyayama 3932063 YP_506647.1 CDS NSE_0772 NC_007798.1 688308 688430 D hypothetical protein 688308..688430 Neorickettsia sennetsu str. Miyayama 3932162 YP_506648.1 CDS lysK NC_007798.1 688535 690052 R class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; lysyl-tRNA synthetase complement(688535..690052) Neorickettsia sennetsu str. Miyayama 3932064 YP_506649.1 CDS NSE_0774 NC_007798.1 690000 690116 R hypothetical protein complement(690000..690116) Neorickettsia sennetsu str. Miyayama 3931347 YP_506650.1 CDS NSE_0775 NC_007798.1 690580 690738 R hypothetical protein complement(690580..690738) Neorickettsia sennetsu str. Miyayama 3931601 YP_506651.1 CDS NSE_0776 NC_007798.1 690830 691009 R hypothetical protein complement(690830..691009) Neorickettsia sennetsu str. Miyayama 3931552 YP_506652.1 CDS moeB NC_007798.1 691163 691900 R identified by similarity to SP:P12282; match to protein family HMM PF00899; match to protein family HMM PF05237; molybdopterin biosynthesis protein MoeB complement(691163..691900) Neorickettsia sennetsu str. Miyayama 3931445 YP_506653.1 CDS NSE_0778 NC_007798.1 691927 692043 R hypothetical protein complement(691927..692043) Neorickettsia sennetsu str. Miyayama 3931422 YP_506654.1 CDS NSE_0779 NC_007798.1 692117 693118 D identified by match to protein family HMM PF00070; match to protein family HMM PF03486; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase family protein 692117..693118 Neorickettsia sennetsu str. Miyayama 3932215 YP_506655.1 CDS NSE_0780 NC_007798.1 693181 693273 R hypothetical protein complement(693181..693273) Neorickettsia sennetsu str. Miyayama 3931465 YP_506656.1 CDS hisS NC_007798.1 693305 694546 R identified by similarity to SP:P30053; match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442; histidyl-tRNA synthetase complement(693305..694546) Neorickettsia sennetsu str. Miyayama 3931975 YP_506657.1 CDS NSE_0782 NC_007798.1 694527 694814 R identified by match to protein family HMM PF01722; BolA family protein complement(694527..694814) Neorickettsia sennetsu str. Miyayama 3931699 YP_506658.1 CDS NSE_0783 NC_007798.1 694897 696144 R identified by match to protein family HMM PF00083; major facilitator family transporter complement(694897..696144) Neorickettsia sennetsu str. Miyayama 3931643 YP_506659.1 CDS lepB NC_007798.1 696464 697222 D identified by similarity to GB:AAM22228.1; match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 696464..697222 Neorickettsia sennetsu str. Miyayama 3931637 YP_506660.1 CDS NSE_0785 NC_007798.1 697345 698634 R identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; MiaB family tRNA modification protein complement(697345..698634) Neorickettsia sennetsu str. Miyayama 3931918 YP_506661.1 CDS NSE_0786 NC_007798.1 698658 698771 D hypothetical protein 698658..698771 Neorickettsia sennetsu str. Miyayama 3931755 YP_506662.1 CDS NSE_0787 NC_007798.1 698840 700207 D hypothetical protein 698840..700207 Neorickettsia sennetsu str. Miyayama 3932278 YP_506663.1 CDS NSE_0788 NC_007798.1 700222 700758 D hypothetical protein 700222..700758 Neorickettsia sennetsu str. Miyayama 3931605 YP_506664.1 CDS NSE_0789 NC_007798.1 700921 701742 D hypothetical protein 700921..701742 Neorickettsia sennetsu str. Miyayama 3932188 YP_506665.1 CDS hemH NC_007798.1 701760 702737 R identified by similarity to SP:P54225; match to protein family HMM PF00762; match to protein family HMM TIGR00109; ferrochelatase complement(701760..702737) Neorickettsia sennetsu str. Miyayama 3931832 YP_506666.1 CDS NSE_0791 NC_007798.1 702873 703850 R hypothetical protein complement(702873..703850) Neorickettsia sennetsu str. Miyayama 3931837 YP_506667.1 CDS rpsT NC_007798.1 703922 704185 R identified by similarity to SP:P02378; match to protein family HMM PF01649; match to protein family HMM TIGR00029; 30S ribosomal protein S20 complement(703922..704185) Neorickettsia sennetsu str. Miyayama 3931463 YP_506668.1 CDS pyrF NC_007798.1 704640 705326 D identified by similarity to SP:Q59654; match to protein family HMM PF00215; match to protein family HMM TIGR01740; orotidine 5'-phosphate decarboxylase 704640..705326 Neorickettsia sennetsu str. Miyayama 3932145 YP_506669.1 CDS NSE_0794 NC_007798.1 705371 706045 R identified by match to protein family HMM PF03741; TerC family membrane protein complement(705371..706045) Neorickettsia sennetsu str. Miyayama 3932125 YP_506670.1 CDS NSE_0795 NC_007798.1 706239 706427 R hypothetical protein complement(706239..706427) Neorickettsia sennetsu str. Miyayama 3931911 YP_506671.1 CDS pccB NC_007798.1 706523 708079 D identified by similarity to SP:P05166; match to protein family HMM PF01039; propionyl-CoA carboxylase subunit beta 706523..708079 Neorickettsia sennetsu str. Miyayama 3931790 YP_506672.1 CDS NSE_0797 NC_007798.1 708193 708750 D hypothetical protein 708193..708750 Neorickettsia sennetsu str. Miyayama 3932200 YP_506673.1 CDS NSE_0798 NC_007798.1 708928 710238 D identified by match to protein family HMM PF02321; outer membrane efflux protein 708928..710238 Neorickettsia sennetsu str. Miyayama 3932252 YP_506674.1 CDS ispG NC_007798.1 710334 711578 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(710334..711578) Neorickettsia sennetsu str. Miyayama 3931584 YP_506675.1 CDS NSE_0800 NC_007798.1 711630 712349 R inositol monophosphatase family protein complement(711630..712349) Neorickettsia sennetsu str. Miyayama 3931785 YP_506676.1 CDS NSE_0801 NC_007798.1 712276 712446 R hypothetical protein complement(712276..712446) Neorickettsia sennetsu str. Miyayama 3931619 YP_506677.1 CDS pdhA NC_007798.1 712430 713434 R identified by similarity to SP:Q9R9N5; match to protein family HMM PF00676; pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase subunit alpha complement(712430..713434) Neorickettsia sennetsu str. Miyayama 3931953 YP_506678.1 CDS NSE_0805 NC_007798.1 716445 716678 R hypothetical protein complement(716445..716678) Neorickettsia sennetsu str. Miyayama 3931906 YP_506679.1 CDS ubiA NC_007798.1 716757 717599 D identified by match to protein family HMM PF01040; 4-hydroxybenzoate octaprenyltransferase 716757..717599 Neorickettsia sennetsu str. Miyayama 3931798 YP_506680.1 CDS NSE_0807 NC_007798.1 717596 718054 D identified by match to protein family HMM PF01613; flavin reductase family protein 717596..718054 Neorickettsia sennetsu str. Miyayama 3931853 YP_506681.1 CDS NSE_0808 NC_007798.1 718156 718923 D identified by match to protein family HMM PF00005; putative phosphate ABC transporter ATP-binding protein 718156..718923 Neorickettsia sennetsu str. Miyayama 3932100 YP_506682.1 CDS NSE_0810 NC_007798.1 719425 719535 R hypothetical protein complement(719425..719535) Neorickettsia sennetsu str. Miyayama 3931708 YP_506683.1 CDS smpB NC_007798.1 719542 719985 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(719542..719985) Neorickettsia sennetsu str. Miyayama 3931343 YP_506684.1 CDS NSE_0812 NC_007798.1 720232 723072 D identified by similarity to SP:P12042; match to protein family HMM PF00586; match to protein family HMM PF02769; putative phosphoribosylformylglycinamidine synthase II 720232..723072 Neorickettsia sennetsu str. Miyayama 3931928 YP_506685.1 CDS NSE_0813 NC_007798.1 723307 723540 R hypothetical protein complement(723307..723540) Neorickettsia sennetsu str. Miyayama 3931751 YP_506686.1 CDS NSE_0814 NC_007798.1 723632 724906 R putative permease complement(723632..724906) Neorickettsia sennetsu str. Miyayama 3931710 YP_506687.1 CDS pccA NC_007798.1 725044 727002 R identified by similarity to GB:AAL66189.1; match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786; propionyl-CoA carboxylase subunit alpha complement(725044..727002) Neorickettsia sennetsu str. Miyayama 3932229 YP_506688.1 CDS prs NC_007798.1 726974 727891 R identified by similarity to SP:P08330; match to protein family HMM PF00156; match to protein family HMM TIGR01251; ribose-phosphate pyrophosphokinase complement(726974..727891) Neorickettsia sennetsu str. Miyayama 3931800 YP_506689.1 CDS NSE_0817 NC_007798.1 728057 728599 R identified by match to protein family HMM PF01106; NifU-like domain-containing protein complement(728057..728599) Neorickettsia sennetsu str. Miyayama 3931579 YP_506690.1 CDS NSE_0818 NC_007798.1 728680 729066 D identified by match to protein family HMM PF00226; DnaJ domain-containing protein 728680..729066 Neorickettsia sennetsu str. Miyayama 3931936 YP_506691.1 CDS NSE_0819 NC_007798.1 729085 729207 D hypothetical protein 729085..729207 Neorickettsia sennetsu str. Miyayama 3931473 YP_506692.1 CDS NSE_0820 NC_007798.1 729277 729759 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 729277..729759 Neorickettsia sennetsu str. Miyayama 3931951 YP_506693.1 CDS folD NC_007798.1 729743 730639 D identified by similarity to SP:P54382; match to protein family HMM PF00763; match to protein family HMM PF02882; FolD bifunctional protein 729743..730639 Neorickettsia sennetsu str. Miyayama 3931653 YP_506694.1 CDS NSE_0823 NC_007798.1 730933 731625 D hypothetical protein 730933..731625 Neorickettsia sennetsu str. Miyayama 3931968 YP_506695.1 CDS NSE_0824 NC_007798.1 731744 733027 R identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein complement(731744..733027) Neorickettsia sennetsu str. Miyayama 3931712 YP_506696.1 CDS hemA NC_007798.1 733470 734690 D catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase 733470..734690 Neorickettsia sennetsu str. Miyayama 3931840 YP_506697.1 CDS rpsU NC_007798.1 734719 734913 R identified by match to protein family HMM TIGR00030; 30S ribosomal protein S21 complement(734719..734913) Neorickettsia sennetsu str. Miyayama 3931650 YP_506698.1 CDS NSE_0828 NC_007798.1 734990 735397 R identified by similarity to SP:P33928; putative cytochrome c-type biogenesis protein CcmE complement(734990..735397) Neorickettsia sennetsu str. Miyayama 3931631 YP_506699.1 CDS NSE_0829 NC_007798.1 735399 737027 R identified by match to protein family HMM PF00753; match to protein family HMM PF07521; metallo-beta-lactamase family protein complement(735399..737027) Neorickettsia sennetsu str. Miyayama 3931644 YP_506700.1 CDS NSE_0830 NC_007798.1 737127 737333 D hypothetical protein 737127..737333 Neorickettsia sennetsu str. Miyayama 3931700 YP_506701.1 CDS NSE_0831 NC_007798.1 737245 737364 R hypothetical protein complement(737245..737364) Neorickettsia sennetsu str. Miyayama 3932096 YP_506702.1 CDS miaB NC_007798.1 737392 738807 D identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01574; tRNA-i(6)A37 modification enzyme MiaB 737392..738807 Neorickettsia sennetsu str. Miyayama 3932248 YP_506703.1 CDS NSE_0834 NC_007798.1 739344 739529 R hypothetical protein complement(739344..739529) Neorickettsia sennetsu str. Miyayama 3931468 YP_506704.1 CDS NSE_0835 NC_007798.1 739597 739737 D hypothetical protein 739597..739737 Neorickettsia sennetsu str. Miyayama 3932217 YP_506705.1 CDS NSE_0837 NC_007798.1 741300 741593 R hypothetical protein complement(741300..741593) Neorickettsia sennetsu str. Miyayama 3931568 YP_506706.1 CDS NSE_0838 NC_007798.1 741687 741923 R hypothetical protein complement(741687..741923) Neorickettsia sennetsu str. Miyayama 3931504 YP_506707.1 CDS rpsI NC_007798.1 742020 742457 R identified by match to protein family HMM PF00380; 30S ribosomal protein S9 complement(742020..742457) Neorickettsia sennetsu str. Miyayama 3931863 YP_506708.1 CDS rplM NC_007798.1 742460 742918 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(742460..742918) Neorickettsia sennetsu str. Miyayama 3932168 YP_506709.1 CDS NSE_0841 NC_007798.1 742951 743622 R identified by match to protein family HMM PF02674; CvpA family protein complement(742951..743622) Neorickettsia sennetsu str. Miyayama 3932091 YP_506710.1 CDS NSE_0842 NC_007798.1 743623 746190 R identified by match to protein family HMM PF06808; match to protein family HMM TIGR02123; TRAP transporter, 4TM/12TM fusion protein complement(743623..746190) Neorickettsia sennetsu str. Miyayama 3931516 YP_506711.1 CDS sodB NC_007798.1 746226 746843 R identified by similarity to SP:P09157; match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase, Fe complement(746226..746843) Neorickettsia sennetsu str. Miyayama 3931864 YP_506712.1 CDS NSE_0844 NC_007798.1 747025 747615 D identified by match to protein family HMM PF00814; glycoprotease family protein 747025..747615 Neorickettsia sennetsu str. Miyayama 3932108 YP_506713.1 CDS NSE_0845 NC_007798.1 747634 748776 D identified by match to protein family HMM PF05525; branched-chain amino acid transporter 747634..748776 Neorickettsia sennetsu str. Miyayama 3931437 YP_506714.1 CDS NSE_0846 NC_007798.1 748965 750164 D identified by match to protein family HMM PF07690; hypothetical protein 748965..750164 Neorickettsia sennetsu str. Miyayama 3932222 YP_506715.1 CDS NSE_0847 NC_007798.1 750174 751187 R identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein complement(750174..751187) Neorickettsia sennetsu str. Miyayama 3931811 YP_506716.1 CDS NSE_0849 NC_007798.1 751546 752280 D identified by match to protein family HMM PF00596; hypothetical protein 751546..752280 Neorickettsia sennetsu str. Miyayama 3931524 YP_506717.1 CDS argD NC_007798.1 752265 753434 D DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine transaminase protein 752265..753434 Neorickettsia sennetsu str. Miyayama 3931945 YP_506718.1 CDS NSE_0851 NC_007798.1 753497 754156 R identified by match to protein family HMM PF00160; cyclophilin-type peptidyl-prolyl cis-trans isomerase complement(753497..754156) Neorickettsia sennetsu str. Miyayama 3931835 YP_506719.1 CDS purC NC_007798.1 754295 755017 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(754295..755017) Neorickettsia sennetsu str. Miyayama 3931615 YP_506720.1 CDS ribE-2 NC_007798.1 755331 755933 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 755331..755933 Neorickettsia sennetsu str. Miyayama 3932253 YP_506721.1 CDS lgt NC_007798.1 756036 756836 D identified by similarity to SP:P37149; match to protein family HMM PF01790; match to protein family HMM TIGR00544; prolipoprotein diacylglyceryl transferase 756036..756836 Neorickettsia sennetsu str. Miyayama 3932218 YP_506722.1 CDS NSE_0855 NC_007798.1 756879 757856 R identified by match to protein family HMM PF02628; putative cytochrome oxidase assembly protein complement(756879..757856) Neorickettsia sennetsu str. Miyayama 3931409 YP_506723.1 CDS rpmH NC_007798.1 758080 758214 D identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030; 50S ribosomal protein L34 758080..758214 Neorickettsia sennetsu str. Miyayama 3932305 YP_506724.1 CDS rnpA NC_007798.1 758205 758546 D identified by similarity to SP:P25814; match to protein family HMM TIGR00188; ribonuclease P protein component 758205..758546 Neorickettsia sennetsu str. Miyayama 3931623 YP_506725.1 CDS NSE_0858 NC_007798.1 758552 758860 D identified by similarity to GB:AAO78334.1; match to protein family HMM PF01809; hypothetical protein 758552..758860 Neorickettsia sennetsu str. Miyayama 3932005 YP_506726.1 CDS NSE_0859 NC_007798.1 758873 762322 R identified by similarity to GB:AAM00403.1; match to protein family HMM PF04610; VirB6 family type IV secretion system protein complement(758873..762322) Neorickettsia sennetsu str. Miyayama 3931769 YP_506727.1 CDS NSE_0860 NC_007798.1 762252 765761 R identified by match to protein family HMM PF04610; VirB6 family type IV secretion system protein complement(762252..765761) Neorickettsia sennetsu str. Miyayama 3931870 YP_506728.1 CDS NSE_0861 NC_007798.1 765772 768291 R identified by match to protein family HMM PF04610; VirB6 family type IV secretion system protein complement(765772..768291) Neorickettsia sennetsu str. Miyayama 3931419 YP_506729.1 CDS virB6 NC_007798.1 768308 770929 R identified by similarity to GB:AAM00403.1; match to protein family HMM PF04610; type IV secretion system protein VirB6 complement(768308..770929) Neorickettsia sennetsu str. Miyayama 3931420 YP_506730.1 CDS virB4-2 NC_007798.1 770926 773337 R identified by similarity to GB:AAM00400.1; match to protein family HMM PF03135; match to protein family HMM TIGR00929; type IV secretion system ATPase VirB4 complement(770926..773337) Neorickettsia sennetsu str. Miyayama 3932201 YP_506731.1 CDS virB3 NC_007798.1 773340 773636 R identified by similarity to GB:AAM00402.1; match to protein family HMM PF05101; type IV secretion system protein VirB3 complement(773340..773636) Neorickettsia sennetsu str. Miyayama 3931469 YP_506732.1 CDS NSE_0865 NC_007798.1 773969 775732 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; putative ABC transporter ATP-binding protein/permease complement(773969..775732) Neorickettsia sennetsu str. Miyayama 3931352 YP_506733.1 CDS NSE_0866 NC_007798.1 775861 776952 R identified by match to protein family HMM PF01734; patatin-like phospholipase family protein complement(775861..776952) Neorickettsia sennetsu str. Miyayama 3931491 YP_506734.1 CDS NSE_0867 NC_007798.1 776970 777077 R hypothetical protein complement(776970..777077) Neorickettsia sennetsu str. Miyayama 3931657 YP_506735.1 CDS NSE_0868 NC_007798.1 777087 777188 R hypothetical protein complement(777087..777188) Neorickettsia sennetsu str. Miyayama 3931345 YP_506736.1 CDS NSE_0869 NC_007798.1 777334 778200 D hypothetical protein 777334..778200 Neorickettsia sennetsu str. Miyayama 3931510 YP_506737.1 CDS NSE_0870 NC_007798.1 778226 778372 D hypothetical protein 778226..778372 Neorickettsia sennetsu str. Miyayama 3932306 YP_506738.1 CDS NSE_0871 NC_007798.1 778305 779162 D identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 778305..779162 Neorickettsia sennetsu str. Miyayama 3931813 YP_506739.1 CDS NSE_0872 NC_007798.1 779288 780073 D hypothetical protein 779288..780073 Neorickettsia sennetsu str. Miyayama 3931721 YP_506740.1 CDS NSE_0873 NC_007798.1 780397 781311 D hypothetical protein 780397..781311 Neorickettsia sennetsu str. Miyayama 3932057 YP_506741.1 CDS NSE_0874 NC_007798.1 781561 781671 D hypothetical protein 781561..781671 Neorickettsia sennetsu str. Miyayama 3931450 YP_506742.1 CDS NSE_0875 NC_007798.1 781677 782417 D identified by similarity to GB:AAC46296.1; match to protein family HMM PF01617; putative outer surface protein 781677..782417 Neorickettsia sennetsu str. Miyayama 3932300 YP_506743.1 CDS secG NC_007798.1 782478 782801 D identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 782478..782801 Neorickettsia sennetsu str. Miyayama 3931431 YP_506744.1 CDS pyrG NC_007798.1 782794 784440 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 782794..784440 Neorickettsia sennetsu str. Miyayama 3931541 YP_506745.1 CDS NSE_0879 NC_007798.1 784737 786728 D hypothetical protein 784737..786728 Neorickettsia sennetsu str. Miyayama 3932113 YP_506746.1 CDS NSE_0880 NC_007798.1 786737 787162 R identified by similarity to GB:AAS13983.1; putative N utilization substance protein B complement(786737..787162) Neorickettsia sennetsu str. Miyayama 3932061 YP_506747.1 CDS maf NC_007798.1 787152 787781 R identified by match to protein family HMM PF02545; maf protein complement(787152..787781) Neorickettsia sennetsu str. Miyayama 3931679 YP_506748.1 CDS infA NC_007798.1 787815 788096 R identified by similarity to SP:P02998; match to protein family HMM TIGR00008; translation initiation factor IF-1 complement(787815..788096) Neorickettsia sennetsu str. Miyayama 3932231 YP_506749.1 CDS NSE_0883 NC_007798.1 788148 788261 R hypothetical protein complement(788148..788261) Neorickettsia sennetsu str. Miyayama 3931392 YP_506750.1 CDS NSE_0884 NC_007798.1 788477 789007 D identified by similarity to GB:CAD84691.1; hypothetical protein 788477..789007 Neorickettsia sennetsu str. Miyayama 3931649 YP_506751.1 CDS NSE_0885 NC_007798.1 789029 790765 D identified by similarity to SP:P03819; match to protein family HMM PF00999; match to protein family HMM PF02254; match to protein family HMM TIGR00932; glutathione-regulated potassium-efflux system protein 789029..790765 Neorickettsia sennetsu str. Miyayama 3931815 YP_506752.1 CDS NSE_0886 NC_007798.1 790677 790865 D hypothetical protein 790677..790865 Neorickettsia sennetsu str. Miyayama 3931488 YP_506753.1 CDS guaA NC_007798.1 790828 792387 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(790828..792387) Neorickettsia sennetsu str. Miyayama 3931366 YP_506754.1 CDS NSE_0888 NC_007798.1 792519 793259 R identified by similarity to SP:P21590; match to protein family HMM PF01656; ATP-binding Mrp/Nbp35 family protein complement(792519..793259) Neorickettsia sennetsu str. Miyayama 3931515 YP_506755.1 CDS NSE_0889 NC_007798.1 793656 794282 D identified by similarity to SP:P07176; putative peptidoglycan-associated lipoprotein 793656..794282 Neorickettsia sennetsu str. Miyayama 3931428 YP_506756.1 CDS NSE_0890 NC_007798.1 794298 795143 D identified by similarity to PIR:H97738; hypothetical protein 794298..795143 Neorickettsia sennetsu str. Miyayama 3931407 YP_506757.1 CDS gpmI NC_007798.1 795212 796684 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 795212..796684 Neorickettsia sennetsu str. Miyayama 3931775 YP_506758.1 CDS NSE_0892 NC_007798.1 796699 797439 R identified by similarity to GB:BAB47692.1; hypothetical protein complement(796699..797439) Neorickettsia sennetsu str. Miyayama 3931614 YP_506759.1 CDS metG NC_007798.1 797690 799201 D identified by similarity to SP:O05593; match to protein family HMM PF00133; match to protein family HMM TIGR00398; methionyl-tRNA synthetase 797690..799201 Neorickettsia sennetsu str. Miyayama 3931452 YP_506760.1 CDS trxA NC_007798.1 799237 799545 R identified by similarity to SP:P00274; match to protein family HMM PF00085; thioredoxin 1 complement(799237..799545) Neorickettsia sennetsu str. Miyayama 3932247 YP_506761.1 CDS rplS NC_007798.1 799555 799917 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(799555..799917) Neorickettsia sennetsu str. Miyayama 3931562 YP_506762.1 CDS trmD NC_007798.1 799941 800618 R identified by match to protein family HMM PF01746; match to protein family HMM TIGR00088; tRNA (guanine-N1)-methyltransferase complement(799941..800618) Neorickettsia sennetsu str. Miyayama 3931442 YP_506763.1 CDS rpmA NC_007798.1 800634 800882 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(800634..800882) Neorickettsia sennetsu str. Miyayama 3931866 YP_506764.1 CDS rplU NC_007798.1 800931 801230 R identified by similarity to SP:P02422; match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 complement(800931..801230) Neorickettsia sennetsu str. Miyayama 3931652 YP_506765.1 CDS recR NC_007798.1 801342 801932 R identified by similarity to SP:P24277; match to protein family HMM PF01751; match to protein family HMM TIGR00615; recombination protein RecR complement(801342..801932) Neorickettsia sennetsu str. Miyayama 3931543 YP_506766.1 CDS NSE_0900 NC_007798.1 801997 802689 D identified by similarity to PIR:H97456; hypothetical protein 801997..802689 Neorickettsia sennetsu str. Miyayama 3932116 YP_506767.1 CDS NSE_0901 NC_007798.1 802961 803734 D identified by similarity to GB:AAM22615.1; match to protein family HMM PF01323; disulfide oxidoreductase 802961..803734 Neorickettsia sennetsu str. Miyayama 3931358 YP_506768.1 CDS NSE_0902 NC_007798.1 804130 804462 D hypothetical protein 804130..804462 Neorickettsia sennetsu str. Miyayama 3931393 YP_506769.1 CDS NSE_0903 NC_007798.1 804282 804473 R hypothetical protein complement(804282..804473) Neorickettsia sennetsu str. Miyayama 3931677 YP_506770.1 CDS NSE_0904 NC_007798.1 804704 805501 D identified by similarity to GB:AAC31427.1; strain-specific surface antigen 804704..805501 Neorickettsia sennetsu str. Miyayama 3932155 YP_506771.1 CDS NSE_0906 NC_007798.1 806019 806150 R hypothetical protein complement(806019..806150) Neorickettsia sennetsu str. Miyayama 3932055 YP_506772.1 CDS NSE_0907 NC_007798.1 806356 806451 R hypothetical protein complement(806356..806451) Neorickettsia sennetsu str. Miyayama 3931511 YP_506773.1 CDS NSE_0908 NC_007798.1 806668 807666 D identified by similarity to GB:AAC31427.1; strain-specific surface antigen 806668..807666 Neorickettsia sennetsu str. Miyayama 3932143 YP_506774.1 CDS NSE_0909 NC_007798.1 807635 807793 R hypothetical protein complement(807635..807793) Neorickettsia sennetsu str. Miyayama 3931820 YP_506775.1 CDS NSE_0910 NC_007798.1 808080 809132 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 808080..809132 Neorickettsia sennetsu str. Miyayama 3931861 YP_506776.1 CDS NSE_0912 NC_007798.1 809434 809580 R hypothetical protein complement(809434..809580) Neorickettsia sennetsu str. Miyayama 3931954 YP_506777.1 CDS NSE_0913 NC_007798.1 809558 810904 R identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase complement(809558..810904) Neorickettsia sennetsu str. Miyayama 3932189 YP_506778.1 CDS NSE_0914 NC_007798.1 810907 812220 R identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase complement(810907..812220) Neorickettsia sennetsu str. Miyayama 3931549 YP_506779.1 CDS lspA NC_007798.1 812233 812787 R identified by match to protein family HMM PF01252; match to protein family HMM TIGR00077; signal peptidase II complement(812233..812787) Neorickettsia sennetsu str. Miyayama 3932129 YP_506780.1 CDS NSE_0916 NC_007798.1 812789 814144 R identified by similarity to SP:P42663; putative carboxypeptidase complement(812789..814144) Neorickettsia sennetsu str. Miyayama 3931801 YP_506781.1 CDS NSE_0917 NC_007798.1 814327 815094 D hypothetical protein 814327..815094 Neorickettsia sennetsu str. Miyayama 3931976 YP_506782.1 CDS rnc NC_007798.1 815133 815801 R identified by similarity to SP:P05797; match to protein family HMM PF00035; match to protein family HMM PF00636; match to protein family HMM TIGR02191; ribonuclease III complement(815133..815801) Neorickettsia sennetsu str. Miyayama 3931585 YP_506783.1 CDS NSE_0919 NC_007798.1 815792 816124 R identified by match to protein family HMM PF02410; iojap-like protein complement(815792..816124) Neorickettsia sennetsu str. Miyayama 3931654 YP_506784.1 CDS NSE_0920 NC_007798.1 816126 816272 R hypothetical protein complement(816126..816272) Neorickettsia sennetsu str. Miyayama 3931646 YP_506785.1 CDS mraW NC_007798.1 816499 817389 R identified by similarity to SP:P18595; match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW complement(816499..817389) Neorickettsia sennetsu str. Miyayama 3932131 YP_506786.1 CDS NSE_0922 NC_007798.1 817520 818173 R identified by similarity to SP:P32049; match to protein family HMM PF02390; putative tRNA (guanine-N(7)-)-methyltransferase complement(817520..818173) Neorickettsia sennetsu str. Miyayama 3932004 YP_506787.1 CDS NSE_0923 NC_007798.1 818268 818927 R identified by similarity to SP:Q50985; putative competence protein ComL complement(818268..818927) Neorickettsia sennetsu str. Miyayama 3931716 YP_506788.1 CDS purD NC_007798.1 818998 820263 D identified by similarity to SP:P15640; match to protein family HMM PF01071; match to protein family HMM PF02842; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877; phosphoribosylamine--glycine ligase 818998..820263 Neorickettsia sennetsu str. Miyayama 3931757 YP_506789.1 CDS NSE_0925 NC_007798.1 820417 821106 R hypothetical protein complement(820417..821106) Neorickettsia sennetsu str. Miyayama 3932280 YP_506790.1 CDS NSE_0926 NC_007798.1 821205 821948 R hypothetical protein complement(821205..821948) Neorickettsia sennetsu str. Miyayama 3932214 YP_506791.1 CDS NSE_0927 NC_007798.1 821998 822132 R identified by similarity to GB:AAS14072.1; hypothetical protein complement(821998..822132) Neorickettsia sennetsu str. Miyayama 3932164 YP_506792.1 CDS NSE_0928 NC_007798.1 822163 822360 R hypothetical protein complement(822163..822360) Neorickettsia sennetsu str. Miyayama 3931571 YP_506793.1 CDS dapA NC_007798.1 822373 823299 D identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674; dihydrodipicolinate synthase 822373..823299 Neorickettsia sennetsu str. Miyayama 3931480 YP_506794.1 CDS NSE_0930 NC_007798.1 823434 823553 R hypothetical protein complement(823434..823553) Neorickettsia sennetsu str. Miyayama 3931749 YP_506795.1 CDS NSE_0931 NC_007798.1 823618 823728 R hypothetical protein complement(823618..823728) Neorickettsia sennetsu str. Miyayama 3931397 YP_506796.1 CDS NSE_0932 NC_007798.1 824044 824565 D identified by match to protein family HMM PF01292; cytochrome b561 family protein 824044..824565 Neorickettsia sennetsu str. Miyayama 3931432 YP_506797.1 CDS NSE_0933 NC_007798.1 824531 824869 D hypothetical protein 824531..824869 Neorickettsia sennetsu str. Miyayama 3932181 YP_506798.1 CDS NSE_0934 NC_007798.1 824862 825506 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD family hydrolase 824862..825506 Neorickettsia sennetsu str. Miyayama 3931368 YP_506799.1 CDS NSE_0935 NC_007798.1 825577 826344 D identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758; uracil-DNA glycosylase 825577..826344 Neorickettsia sennetsu str. Miyayama 3932135 YP_506800.1 CDS NSE_0936 NC_007798.1 826472 827101 D identified by similarity to SP:P43262; putative vacJ lipoprotein 826472..827101 Neorickettsia sennetsu str. Miyayama 3931920 YP_506801.1 CDS NSE_0937 NC_007798.1 827085 827693 D identified by similarity to PIR:E71718; hypothetical protein 827085..827693 Neorickettsia sennetsu str. Miyayama 3931411 YP_506802.1 CDS NSE_0938 NC_007798.1 827748 828050 R identified by similarity to GB:AAS14408.1; hypothetical protein complement(827748..828050) Neorickettsia sennetsu str. Miyayama 3932082 YP_506803.1 CDS NSE_0939 NC_007798.1 828564 830048 D identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843; HlyD family type I secretion membrane fusion protein 828564..830048 Neorickettsia sennetsu str. Miyayama 3931489 YP_506804.1 CDS NSE_0940 NC_007798.1 830186 831325 D identified by similarity to SP:P94527; AraM domain-containing protein 830186..831325 Neorickettsia sennetsu str. Miyayama 3932292 YP_506805.1 CDS NSE_0941 NC_007798.1 831330 831578 D identified by similarity to PIR:D97574; match to protein family HMM PF03937; hypothetical protein 831330..831578 Neorickettsia sennetsu str. Miyayama 3932169 YP_506806.1 CDS NSE_0942 NC_007798.1 831656 832273 R identified by similarity to SP:O31752; match to protein family HMM PF01148; putative phosphatidate cytidylyltransferase complement(831656..832273) Neorickettsia sennetsu str. Miyayama 3931818 YP_506807.1 CDS NSE_0943 NC_007798.1 832379 832480 R hypothetical protein complement(832379..832480) Neorickettsia sennetsu str. Miyayama 3932207 YP_506808.1 CDS uppS NC_007798.1 832470 833162 R identified by similarity to SP:O82827; match to protein family HMM PF01255; match to protein family HMM TIGR00055; undecaprenyl diphosphate synthase complement(832470..833162) Neorickettsia sennetsu str. Miyayama 3931651 YP_506809.1 CDS frr NC_007798.1 833159 833716 R identified by similarity to SP:P16174; match to protein family HMM PF01765; match to protein family HMM TIGR00496; ribosome recycling factor complement(833159..833716) Neorickettsia sennetsu str. Miyayama 3931454 YP_506810.1 CDS pyrH NC_007798.1 833729 834430 R identified by match to protein family HMM PF00696; match to protein family HMM TIGR02075; uridylate kinase complement(833729..834430) Neorickettsia sennetsu str. Miyayama 3931337 YP_506811.1 CDS tsf NC_007798.1 834437 835309 R identified by similarity to SP:P80700; match to protein family HMM PF00627; match to protein family HMM PF00889; match to protein family HMM TIGR00116; translation elongation factor Ts complement(834437..835309) Neorickettsia sennetsu str. Miyayama 3932029 YP_506812.1 CDS rpsB NC_007798.1 835332 836228 R identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; 30S ribosomal protein S2 complement(835332..836228) Neorickettsia sennetsu str. Miyayama 3932142 YP_506813.1 CDS NSE_0949 NC_007798.1 836299 836454 R hypothetical protein complement(836299..836454) Neorickettsia sennetsu str. Miyayama 3931691 YP_506814.1 CDS ubiE NC_007798.1 836412 837104 D identified by match to protein family HMM PF01209; match to protein family HMM TIGR01934; ubiquinone/menaquinone biosynthesis methlytransferase UbiE 836412..837104 Neorickettsia sennetsu str. Miyayama 3931388 YP_506815.1 CDS NSE_0951 NC_007798.1 837101 837220 D hypothetical protein 837101..837220 Neorickettsia sennetsu str. Miyayama 3931354 YP_506816.1 CDS NSE_0952 NC_007798.1 837267 837428 D hypothetical protein 837267..837428 Neorickettsia sennetsu str. Miyayama 3932237 YP_506817.1 CDS pdhC NC_007798.1 837687 838898 D identified by similarity to SP:Q9R9N3; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01349; pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase 837687..838898 Neorickettsia sennetsu str. Miyayama 3931514 YP_506818.1 CDS NSE_0954 NC_007798.1 839095 839865 D putative phosphomethylpyrimidine kinase 839095..839865 Neorickettsia sennetsu str. Miyayama 3931655 YP_506819.1 CDS ruvC NC_007798.1 839874 840374 R identified by match to protein family HMM PF02075; crossover junction endodeoxyribonuclease RuvC complement(839874..840374) Neorickettsia sennetsu str. Miyayama 3931536 YP_506820.1 CDS mdh NC_007798.1 840464 841411 R identified by similarity to SP:P49814; match to protein family HMM PF00056; match to protein family HMM PF02866; malate dehydrogenase, NAD-dependent complement(840464..841411) Neorickettsia sennetsu str. Miyayama 3931592 YP_506821.1 CDS dut NC_007798.1 841754 842203 D identified by match to protein family HMM PF00692; match to protein family HMM TIGR00576; deoxyuridine 5'triphosphate nucleotidohydrolase 841754..842203 Neorickettsia sennetsu str. Miyayama 3931824 YP_506822.1 CDS gyrA NC_007798.1 842498 845107 D identified by similarity to SP:P09097; match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063; DNA gyrase subunit A 842498..845107 Neorickettsia sennetsu str. Miyayama 3932182 YP_506823.1 CDS era NC_007798.1 845304 846230 R identified by match to protein family HMM PF01926; match to protein family HMM PF07650; match to protein family HMM TIGR00231; match to protein family HMM TIGR00436; GTP-binding protein Era complement(845304..846230) Neorickettsia sennetsu str. Miyayama 3931774 YP_506824.1 CDS fabD NC_007798.1 846297 847226 R identified by similarity to SP:P71019; match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase complement(846297..847226) Neorickettsia sennetsu str. Miyayama 3932192 YP_506825.1 CDS dnaG NC_007798.1 847304 849043 R identified by similarity to SP:P02923; match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM TIGR01391; DNA primase complement(847304..849043) Neorickettsia sennetsu str. Miyayama 3931738 YP_506826.1 CDS acpS NC_007798.1 849084 849449 R identified by similarity to SP:P24224; match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556; holo-(acyl-carrier protein) synthase complement(849084..849449) Neorickettsia sennetsu str. Miyayama 3932117 YP_506827.1 CDS NSE_0963 NC_007798.1 849584 850786 D hypothetical protein 849584..850786 Neorickettsia sennetsu str. Miyayama 3932224 YP_506828.1 CDS dcd NC_007798.1 850940 851497 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(850940..851497) Neorickettsia sennetsu str. Miyayama 3931900 YP_506829.1 CDS purK NC_007798.1 851895 852944 D identified by similarity to SP:P12045; match to protein family HMM PF02222; match to protein family HMM TIGR01161; phosphoribosylaminoimidazole carboxylase, ATPase subunit 851895..852944 Neorickettsia sennetsu str. Miyayama 3931919 YP_506830.1 CDS NSE_0966 NC_007798.1 853024 853659 R identified by similarity to GB:BAB54269.1; hypothetical protein complement(853024..853659) Neorickettsia sennetsu str. Miyayama 3931371 YP_506831.1 CDS NSE_0967 NC_007798.1 853738 855135 D identified by match to protein family HMM TIGR01630; phage protein 853738..855135 Neorickettsia sennetsu str. Miyayama 3931735 YP_506832.1 CDS hemE NC_007798.1 855542 856516 D identified by similarity to SP:P42503; match to protein family HMM PF01208; match to protein family HMM TIGR01464; uroporphyrinogen decarboxylase 855542..856516 Neorickettsia sennetsu str. Miyayama 3931747 YP_506833.1 CDS nadA NC_007798.1 856566 857513 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 856566..857513 Neorickettsia sennetsu str. Miyayama 3931926 YP_506834.1 CDS coaD NC_007798.1 857539 858024 R identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01510; pantetheine-phosphate adenylyltransferase complement(857539..858024) Neorickettsia sennetsu str. Miyayama 3931908 YP_506835.1 CDS NSE_0971 NC_007798.1 858028 858852 R identified by similarity to GB:AAS14837.1; hypothetical protein complement(858028..858852) Neorickettsia sennetsu str. Miyayama 3931996 NSE_0095 tRNA NSE_0095 NC_007798.1 78966 79039 R tRNA-Ile complement(78966..79039) Neorickettsia sennetsu str. Miyayama 3931876 NSE_0136 tRNA NSE_0136 NC_007798.1 111502 111576 D tRNA-Thr 111502..111576 Neorickettsia sennetsu str. Miyayama 3932043 NSE_0150 tRNA NSE_0150 NC_007798.1 120536 120606 D tRNA-Cys 120536..120606 Neorickettsia sennetsu str. Miyayama 3931889 NSE_0160 tRNA NSE_0160 NC_007798.1 129288 129375 D tRNA-Leu 129288..129375 Neorickettsia sennetsu str. Miyayama 3931878 NSE_0168 tRNA NSE_0168 NC_007798.1 138290 138361 D tRNA-Gln 138290..138361 Neorickettsia sennetsu str. Miyayama 3931871 NSE_0171 tRNA NSE_0171 NC_007798.1 140963 141035 D tRNA-Phe 140963..141035 Neorickettsia sennetsu str. Miyayama 3931962 NSE_0223 tRNA NSE_0223 NC_007798.1 189515 189591 D tRNA-Ile 189515..189591 Neorickettsia sennetsu str. Miyayama 3931877 NSE_0252 tRNA NSE_0252 NC_007798.1 214471 214544 D tRNA-Met 214471..214544 Neorickettsia sennetsu str. Miyayama 3931960 NSE_0263 tRNA NSE_0263 NC_007798.1 223898 223980 D tRNA-Tyr 223898..223980 Neorickettsia sennetsu str. Miyayama 3932046 NSE_0264 tRNA NSE_0264 NC_007798.1 223989 224062 D tRNA-Gly 223989..224062 Neorickettsia sennetsu str. Miyayama 3931873 NSE_0295 tRNA NSE_0295 NC_007798.1 240339 240411 R tRNA-Lys complement(240339..240411) Neorickettsia sennetsu str. Miyayama 3931959 NSE_0325 tRNA NSE_0325 NC_007798.1 267846 267919 D tRNA-Arg 267846..267919 Neorickettsia sennetsu str. Miyayama 3931883 NSE_0391 tRNA NSE_0391 NC_007798.1 319622 319694 R tRNA-Glu complement(319622..319694) Neorickettsia sennetsu str. Miyayama 3931872 NSE_0393 tRNA NSE_0393 NC_007798.1 320758 320833 R tRNA-Val complement(320758..320833) Neorickettsia sennetsu str. Miyayama 3932047 NSE_0412 tRNA NSE_0412 NC_007798.1 338340 338413 D tRNA-Met 338340..338413 Neorickettsia sennetsu str. Miyayama 3931961 NSE_0433 tRNA NSE_0433 NC_007798.1 354038 354120 D tRNA-Leu 354038..354120 Neorickettsia sennetsu str. Miyayama 3931879 NSE_0476 tRNA NSE_0476 NC_007798.1 393861 393933 R tRNA-His complement(393861..393933) Neorickettsia sennetsu str. Miyayama 3931875 NSE_0532 tRNA NSE_0532 NC_007798.1 459258 459352 D tRNA-Ser 459258..459352 Neorickettsia sennetsu str. Miyayama 3931964 NSE_0552 tRNA NSE_0552 NC_007798.1 481245 481319 D tRNA-Pro 481245..481319 Neorickettsia sennetsu str. Miyayama 3931963 NSE_0567 tRNA NSE_0567 NC_007798.1 492997 493069 R tRNA-Asn complement(492997..493069) Neorickettsia sennetsu str. Miyayama 3931887 NSE_0582 tRNA NSE_0582 NC_007798.1 507196 507278 R tRNA-Leu complement(507196..507278) Neorickettsia sennetsu str. Miyayama 3931880 NSE_0619 tRNA NSE_0619 NC_007798.1 542103 542176 D tRNA-Val 542103..542176 Neorickettsia sennetsu str. Miyayama 3932048 NSE_0629 tRNA NSE_0629 NC_007798.1 551295 551371 D tRNA-Arg 551295..551371 Neorickettsia sennetsu str. Miyayama 3931884 NSE_0685 tRNA NSE_0685 NC_007798.1 605184 605256 R tRNA-Trp complement(605184..605256) Neorickettsia sennetsu str. Miyayama 3932045 NSE_0695 tRNA NSE_0695 NC_007798.1 616775 616847 D tRNA-Thr 616775..616847 Neorickettsia sennetsu str. Miyayama 3932044 NSE_0750 tRNA NSE_0750 NC_007798.1 667974 668057 D tRNA-Leu 667974..668057 Neorickettsia sennetsu str. Miyayama 3931958 NSE_0809 tRNA NSE_0809 NC_007798.1 719020 719095 R tRNA-Arg complement(719020..719095) Neorickettsia sennetsu str. Miyayama 3931885 NSE_0822 tRNA NSE_0822 NC_007798.1 730687 730773 R tRNA-Ser complement(730687..730773) Neorickettsia sennetsu str. Miyayama 3931965 NSE_0825 tRNA NSE_0825 NC_007798.1 733383 733458 D tRNA-Gly 733383..733458 Neorickettsia sennetsu str. Miyayama 3931874 NSE_0833 tRNA NSE_0833 NC_007798.1 739170 739259 D tRNA-Ser 739170..739259 Neorickettsia sennetsu str. Miyayama 3931966 NSE_0848 tRNA NSE_0848 NC_007798.1 751316 751392 D tRNA-Asp 751316..751392 Neorickettsia sennetsu str. Miyayama 3931888 NSE_0878 tRNA NSE_0878 NC_007798.1 784522 784594 R tRNA-Ala complement(784522..784594) Neorickettsia sennetsu str. Miyayama 3931882 NSE_0911 tRNA NSE_0911 NC_007798.1 809345 809418 R tRNA-Arg complement(809345..809418) Neorickettsia sennetsu str. Miyayama 3931886 NSE_0973 rRNA rrsA NC_007798.1 36268 37765 D 16S ribosomal RNA 36268..37765 Neorickettsia sennetsu str. Miyayama 3932086 NSE_0975 rRNA rrfC NC_007798.1 713452 713561 R 5S ribosomal RNA complement(713452..713561) Neorickettsia sennetsu str. Miyayama 3932088 NSE_0976 rRNA rrlB NC_007798.1 713620 716391 R 23S ribosomal RNA complement(713620..716391) Neorickettsia sennetsu str. Miyayama 3932087