-- dump date 20111121_013625 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_003522562.1 291615454 8893779 complement(154..3549) 1 NC_013958.1 PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicase; KEGG: rfr:Rfer_1062 type III restriction enzyme, res subunit; type III restriction protein res subunit 3549 8893779 Nhal_3962 Nitrosococcus halophilus Nc4 type III restriction protein res subunit YP_003522562.1 154 R 472759 CDS YP_003522563.1 291615455 8893708 complement(3565..4815) 1 NC_013958.1 PFAM: restriction modification system DNA specificity domain; KEGG: rpt:Rpal_1502 restriction modification system DNA specificity domain; restriction modification system DNA specificity domain protein 4815 8893708 Nhal_3963 Nitrosococcus halophilus Nc4 restriction modification system DNA specificity domain protein YP_003522563.1 3565 R 472759 CDS YP_003522564.1 291615456 8893709 complement(4812..6272) 1 NC_013958.1 PFAM: N-6 DNA methylase; KEGG: gur:Gura_2095 N-6 DNA methylase; N-6 DNA methylase 6272 8893709 Nhal_3964 Nitrosococcus halophilus Nc4 N-6 DNA methylase YP_003522564.1 4812 R 472759 CDS YP_003522565.1 291615457 8893710 6627..6956 1 NC_013958.1 TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; KEGG: mrd:Mrad2831_6456 addiction module killer protein; addiction module killer protein 6956 8893710 Nhal_3965 Nitrosococcus halophilus Nc4 addiction module killer protein YP_003522565.1 6627 D 472759 CDS YP_003522566.1 291615458 8893711 6960..7277 1 NC_013958.1 KEGG: noc:Noc_0674 hypothetical protein; hypothetical protein 7277 8893711 Nhal_3966 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522566.1 6960 D 472759 CDS YP_003522567.1 291615459 8893712 complement(7450..8556) 1 NC_013958.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: noc:Noc_A0032 membrane-bound metal-dependent hydrolase; membrane-bound metal-dependent hydrolase 8556 8893712 Nhal_3967 Nitrosococcus halophilus Nc4 membrane-bound metal-dependent hydrolase YP_003522567.1 7450 R 472759 CDS YP_003522568.1 291615460 8893713 complement(8612..8836) 1 NC_013958.1 KEGG: afr:AFE_2792 hypothetical protein; hypothetical protein 8836 8893713 Nhal_3968 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522568.1 8612 R 472759 CDS YP_003522569.1 291615461 8893714 complement(8836..9180) 1 NC_013958.1 KEGG: mex:Mext_2358 hypothetical protein; hypothetical protein 9180 8893714 Nhal_3969 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522569.1 8836 R 472759 CDS YP_003522570.1 291615462 8893715 complement(9182..9949) 1 NC_013958.1 KEGG: noc:Noc_A0035 hypothetical protein; hypothetical protein 9949 8893715 Nhal_3970 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522570.1 9182 R 472759 CDS YP_003522571.1 291615463 8893716 complement(9984..10811) 1 NC_013958.1 KEGG: noc:Noc_A0036 hypothetical protein; hypothetical protein 10811 8893716 Nhal_3971 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522571.1 9984 R 472759 CDS YP_003522572.1 291615464 8893717 complement(10816..11052) 1 NC_013958.1 KEGG: noc:Noc_A0037 hypothetical protein; hypothetical protein 11052 8893717 Nhal_3972 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522572.1 10816 R 472759 CDS YP_003522573.1 291615465 8893718 11340..11477 1 NC_013958.1 hypothetical protein 11477 8893718 Nhal_3973 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522573.1 11340 D 472759 CDS YP_003522574.1 291615466 8893719 11578..11808 1 NC_013958.1 hypothetical protein 11808 8893719 Nhal_3974 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522574.1 11578 D 472759 CDS YP_003522575.1 291615467 8893720 complement(12107..12874) 1 NC_013958.1 KEGG: noc:Noc_A0039 hypothetical protein; hypothetical protein 12874 8893720 Nhal_3975 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522575.1 12107 R 472759 CDS YP_003522576.1 291615468 8893721 complement(13265..13555) 1 NC_013958.1 KEGG: noc:Noc_A0040 hypothetical protein; hypothetical protein 13555 8893721 Nhal_3976 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522576.1 13265 R 472759 CDS YP_003522577.1 291615469 8893722 complement(13715..13939) 1 NC_013958.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: noc:Noc_1652 XRE family transcriptional regulator; helix-turn-helix domain protein 13939 8893722 Nhal_3977 Nitrosococcus halophilus Nc4 helix-turn-helix domain protein YP_003522577.1 13715 R 472759 CDS YP_003522578.1 291615470 8893775 complement(14221..14433) 1 NC_013958.1 hypothetical protein 14433 8893775 Nhal_3979 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522578.1 14221 R 472759 CDS YP_003522579.1 291615471 8893724 14512..15252 1 NC_013958.1 KEGG: ajs:Ajs_4307 hypothetical protein; hypothetical protein 15252 8893724 Nhal_3980 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522579.1 14512 D 472759 CDS YP_003522580.1 291615472 8893725 complement(15334..15849) 1 NC_013958.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rpa:RPA4135 GCN5-related N-acetyltransferase; GCN5-related N-acetyltransferase 15849 8893725 Nhal_3981 Nitrosococcus halophilus Nc4 GCN5-related N-acetyltransferase YP_003522580.1 15334 R 472759 CDS YP_003522581.1 291615473 8893726 complement(15846..16118) 1 NC_013958.1 PFAM: Protein of unknown function DUF1778; KEGG: rpe:RPE_1144 hypothetical protein; hypothetical protein 16118 8893726 Nhal_3982 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522581.1 15846 R 472759 CDS YP_003522582.1 291615474 8893727 16175..16324 1 NC_013958.1 KEGG: pfs:PFLU5282A putative DNA invertase; hypothetical protein 16324 8893727 Nhal_3983 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522582.1 16175 D 472759 CDS YP_003522583.1 291615475 8893728 16848..17231 1 NC_013958.1 KEGG: prw:PsycPRwf_1938 IS1 transposase; hypothetical protein 17231 8893728 Nhal_3984 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522583.1 16848 D 472759 CDS YP_003522584.1 291615476 8893729 17255..17581 1 NC_013958.1 PFAM: IS1 transposase; KEGG: sdy:SDY_0314 iso-IS1 ORF2; IS1 transposase 17581 8893729 Nhal_3985 Nitrosococcus halophilus Nc4 IS1 transposase YP_003522584.1 17255 D 472759 CDS YP_003522585.1 291615477 8893730 17698..18549 1 NC_013958.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: gbm:Gbem_0310 hypothetical protein; Rubredoxin-type Fe(Cys)4 protein 18549 8893730 Nhal_3986 Nitrosococcus halophilus Nc4 Rubredoxin-type Fe(Cys)4 protein YP_003522585.1 17698 D 472759 CDS YP_003522586.1 291615478 8893731 complement(18632..19132) 1 NC_013958.1 PFAM: Gp157 family protein; KEGG: noc:Noc_A0042 siphovirus GP157; Gp157 family protein 19132 8893731 Nhal_3987 Nitrosococcus halophilus Nc4 Gp157 family protein YP_003522586.1 18632 R 472759 CDS YP_003522587.1 291615479 8893732 complement(19189..20157) 1 NC_013958.1 KEGG: noc:Noc_A0043 hypothetical protein; hypothetical protein 20157 8893732 Nhal_3988 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522587.1 19189 R 472759 CDS YP_003522588.1 291615480 8893733 complement(20241..21041) 1 NC_013958.1 PFAM: protein of unknown function DUF932; KEGG: noc:Noc_A0001 hypothetical protein; hypothetical protein 21041 8893733 Nhal_3989 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522588.1 20241 R 472759 CDS YP_003522589.1 291615481 8893734 complement(21119..21625) 1 NC_013958.1 KEGG: noc:Noc_A0002 hypothetical protein; hypothetical protein 21625 8893734 Nhal_3990 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522589.1 21119 R 472759 CDS YP_003522590.1 291615482 8893735 complement(21704..21913) 1 NC_013958.1 hypothetical protein 21913 8893735 Nhal_3991 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522590.1 21704 R 472759 CDS YP_003522591.1 291615483 8893736 complement(22155..22523) 1 NC_013958.1 PFAM: HicB family protein; KEGG: noc:Noc_A0003 HicB; HicB family protein 22523 8893736 Nhal_3992 Nitrosococcus halophilus Nc4 HicB family protein YP_003522591.1 22155 R 472759 CDS YP_003522592.1 291615484 8893776 complement(22783..23403) 1 NC_013958.1 KEGG: noc:Noc_A0005 hypothetical protein; hypothetical protein 23403 8893776 Nhal_3994 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522592.1 22783 R 472759 CDS YP_003522593.1 291615485 8893738 complement(23576..24178) 1 NC_013958.1 KEGG: noc:Noc_A0005 hypothetical protein; hypothetical protein 24178 8893738 Nhal_3995 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522593.1 23576 R 472759 CDS YP_003522594.1 291615486 8893739 24825..25013 1 NC_013958.1 KEGG: noc:Noc_A0006 hypothetical protein; hypothetical protein 25013 8893739 Nhal_3996 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522594.1 24825 D 472759 CDS YP_003522595.1 291615487 8893740 25010..25531 1 NC_013958.1 KEGG: noc:Noc_A0007 putative type-4 fimbrial pilin related signal peptide protein; putative type-4 fimbrial pilin related signal peptide protein 25531 8893740 Nhal_3997 Nitrosococcus halophilus Nc4 putative type-4 fimbrial pilin related signal peptide protein YP_003522595.1 25010 D 472759 CDS YP_003522596.1 291615488 8893741 complement(25583..26188) 1 NC_013958.1 KEGG: cps:CPS_4812 hypothetical protein; aspartyl protease-like protein 26188 8893741 Nhal_3998 Nitrosococcus halophilus Nc4 aspartyl protease-like protein YP_003522596.1 25583 R 472759 CDS YP_003522597.1 291615489 8893742 complement(26440..27630) 1 NC_013958.1 PFAM: Endonuclease/exonuclease/phosphatase; SMART: Deoxyribonuclease I-like; KEGG: noc:Noc_A0008 endonuclease/exonuclease/phosphatase; Endonuclease/exonuclease/phosphatase 27630 8893742 Nhal_3999 Nitrosococcus halophilus Nc4 Endonuclease/exonuclease/phosphatase YP_003522597.1 26440 R 472759 CDS YP_003522598.1 291615490 8893743 27931..28329 1 NC_013958.1 KEGG: noc:Noc_A0009 hypothetical protein; hypothetical protein 28329 8893743 Nhal_4000 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522598.1 27931 D 472759 CDS YP_003522599.1 291615491 8893744 28393..29208 1 NC_013958.1 PFAM: restriction endonuclease; DNA topoisomerase type IA zn finger domain protein; KEGG: noc:Noc_A0010 restriction endonuclease; restriction endonuclease 29208 8893744 Nhal_4001 Nitrosococcus halophilus Nc4 restriction endonuclease YP_003522599.1 28393 D 472759 CDS YP_003522600.1 291615492 8893745 complement(29268..29579) 1 NC_013958.1 hypothetical protein 29579 8893745 Nhal_4002 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522600.1 29268 R 472759 CDS YP_003522601.1 291615493 8893746 complement(29548..30222) 1 NC_013958.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: glo:Glov_3684 cobyrinic acid ac-diamide synthase; Cobyrinic acid ac-diamide synthase 30222 8893746 Nhal_4003 Nitrosococcus halophilus Nc4 Cobyrinic acid ac-diamide synthase YP_003522601.1 29548 R 472759 CDS YP_003522602.1 291615494 8893747 30452..31225 1 NC_013958.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: noc:Noc_A0013 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase 31225 8893747 Nhal_4004 Nitrosococcus halophilus Nc4 Cobyrinic acid ac-diamide synthase YP_003522602.1 30452 D 472759 CDS YP_003522603.1 291615495 8893748 31218..32072 1 NC_013958.1 KEGG: noc:Noc_A0014 ParB-like partition protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; parB-like partition protein 32072 8893748 Nhal_4005 Nitrosococcus halophilus Nc4 parB-like partition protein YP_003522603.1 31218 D 472759 CDS YP_003522604.1 291615496 8893749 complement(32224..32463) 1 NC_013958.1 hypothetical protein 32463 8893749 Nhal_4006 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522604.1 32224 R 472759 CDS YP_003522605.1 291615497 8893750 32806..33738 1 NC_013958.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: noc:Noc_0687 phage integrase; integrase family protein 33738 8893750 Nhal_4007 Nitrosococcus halophilus Nc4 integrase family protein YP_003522605.1 32806 D 472759 CDS YP_003522606.1 291615498 8893751 complement(33820..34125) 1 NC_013958.1 KEGG: noc:Noc_A0016 hypothetical protein; hypothetical protein 34125 8893751 Nhal_4008 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522606.1 33820 R 472759 CDS YP_003522607.1 291615499 8893752 complement(34162..35157) 1 NC_013958.1 PFAM: integrase domain protein SAM domain protein; integrase family protein; KEGG: noc:Noc_1698 phage integrase; integrase domain protein SAM domain protein 35157 8893752 Nhal_4009 Nitrosococcus halophilus Nc4 integrase domain protein SAM domain protein YP_003522607.1 34162 R 472759 CDS YP_003522608.1 291615500 8893753 complement(35348..36019) 1 NC_013958.1 hypothetical protein 36019 8893753 Nhal_4010 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522608.1 35348 R 472759 CDS YP_003522609.1 291615501 8893754 complement(36131..36373) 1 NC_013958.1 hypothetical protein 36373 8893754 Nhal_4011 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522609.1 36131 R 472759 CDS YP_003522610.1 291615502 8893755 complement(36706..36864) 1 NC_013958.1 hypothetical protein 36864 8893755 Nhal_4012 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522610.1 36706 R 472759 CDS YP_003522611.1 291615503 8893756 37966..38130 1 NC_013958.1 hypothetical protein 38130 8893756 Nhal_4013 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522611.1 37966 D 472759 CDS YP_003522612.1 291615504 8893757 38412..39467 1 NC_013958.1 KEGG: noc:Noc_2766 hypothetical protein; hypothetical protein 39467 8893757 Nhal_4014 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522612.1 38412 D 472759 CDS YP_003522613.1 291615505 8893758 39901..40995 1 NC_013958.1 PFAM: restriction endonuclease; restriction endonuclease 40995 8893758 Nhal_4015 Nitrosococcus halophilus Nc4 restriction endonuclease YP_003522613.1 39901 D 472759 CDS YP_003522614.1 291615506 8893759 40985..41107 1 NC_013958.1 hypothetical protein 41107 8893759 Nhal_4016 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522614.1 40985 D 472759 CDS YP_003522615.1 291615507 8893760 41506..42078 1 NC_013958.1 KEGG: rec:RHECIAT_CH0002802 hypothetical protein; hypothetical protein 42078 8893760 Nhal_4017 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522615.1 41506 D 472759 CDS YP_003522616.1 291615508 8893761 42178..42963 1 NC_013958.1 KEGG: sde:Sde_0715 nucleotide-binding protein; nucleotide-binding protein containing TIR -like protein domain-like protein 42963 8893761 Nhal_4018 Nitrosococcus halophilus Nc4 nucleotide-binding protein containing TIR -like protein domain-like protein YP_003522616.1 42178 D 472759 CDS YP_003522617.1 291615509 8893762 43054..43716 1 NC_013958.1 hypothetical protein 43716 8893762 Nhal_4019 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522617.1 43054 D 472759 CDS YP_003522618.1 291615510 8893763 43742..44806 1 NC_013958.1 KEGG: bja:blr0077 hypothetical protein; hypothetical protein 44806 8893763 Nhal_4020 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522618.1 43742 D 472759 CDS YP_003522619.1 291615511 8893764 45148..45738 1 NC_013958.1 KEGG: vei:Veis_1949 hypothetical protein; hypothetical protein 45738 8893764 Nhal_4021 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522619.1 45148 D 472759 CDS YP_003522620.1 291615512 8893765 complement(46123..47124) 1 NC_013958.1 PFAM: peptidase M28; peptidase M20; KEGG: gbm:Gbem_0054 peptidase M28; peptidase M28 47124 8893765 Nhal_4022 Nitrosococcus halophilus Nc4 peptidase M28 YP_003522620.1 46123 R 472759 CDS YP_003522621.1 291615513 8893777 complement(47353..50169) 1 NC_013958.1 PFAM: helicase domain protein; SNF2-related protein; DEAD/DEAH box helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase domain protein; KEGG: spc:Sputcn32_3376 helicase domain-containing protein; helicase domain protein 50169 8893777 Nhal_4024 Nitrosococcus halophilus Nc4 helicase domain protein YP_003522621.1 47353 R 472759 CDS YP_003522622.1 291615514 8893767 complement(50339..51913) 1 NC_013958.1 KEGG: pst:PSPTO_0021 hypothetical protein; hypothetical protein 51913 8893767 Nhal_4025 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522622.1 50339 R 472759 CDS YP_003522623.1 291615515 8893768 complement(52063..52299) 1 NC_013958.1 KEGG: ppd:Ppro_0225 hypothetical protein; hypothetical protein 52299 8893768 Nhal_4026 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522623.1 52063 R 472759 CDS YP_003522624.1 291615516 8893769 complement(52431..53282) 1 NC_013958.1 hypothetical protein 53282 8893769 Nhal_4027 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522624.1 52431 R 472759 CDS YP_003522625.1 291615517 8893770 53869..53997 1 NC_013958.1 hypothetical protein 53997 8893770 Nhal_4028 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522625.1 53869 D 472759 CDS YP_003522626.1 291615518 8893771 complement(54085..54213) 1 NC_013958.1 hypothetical protein 54213 8893771 Nhal_4029 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522626.1 54085 R 472759 CDS YP_003522627.1 291615519 8893778 54722..58528 1 NC_013958.1 KEGG: vei:Veis_3661 hypothetical protein; hypothetical protein 58528 8893778 Nhal_4031 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522627.1 54722 D 472759 CDS YP_003522628.1 291615520 8893773 58600..59106 1 NC_013958.1 KEGG: mms:mma_2523 hypothetical protein; hypothetical protein 59106 8893773 Nhal_4032 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522628.1 58600 D 472759 CDS YP_003522629.1 291615521 8893774 complement(59355..65549) 1 NC_013958.1 KEGG: pap:PSPA7_3067 hypothetical protein; hypothetical protein 65549 8893774 Nhal_4033 Nitrosococcus halophilus Nc4 hypothetical protein YP_003522629.1 59355 R 472759 CDS YP_003525610.1 292490171 8918980 244..1596 1 NC_013960.1 KEGG: noc:Noc_0001 chromosomal replication initiator protein, DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: replication initiation factor DnaA; ATPase AAA; chromosomal replication initiator protein DnaA 1596 8918980 Nhal_0001 Nitrosococcus halophilus Nc4 chromosomal replication initiator protein DnaA YP_003525610.1 244 D 472759 CDS YP_003525611.1 292490172 8914966 1893..2996 1 NC_013960.1 KEGG: noc:Noc_0002 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III subunit beta; PFAM: DNA polymerase III beta chain; SMART: DNA polymerase III beta chain; DNA polymerase III subunit beta 2996 8914966 Nhal_0002 Nitrosococcus halophilus Nc4 DNA polymerase III subunit beta YP_003525611.1 1893 D 472759 CDS YP_003525612.1 292490173 8914967 3055..4143 1 NC_013960.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: noc:Noc_0018 RecF protein; DNA replication and repair protein RecF 4143 8914967 Nhal_0003 Nitrosococcus halophilus Nc4 DNA replication and repair protein RecF YP_003525612.1 3055 D 472759 CDS YP_003525613.1 292490174 8914968 4168..6585 1 NC_013960.1 KEGG: noc:Noc_0019 DNA gyrase subunit beta; TIGRFAM: DNA gyrase subunit beta; PFAM: DNA topoisomerase type IIsubunit alpha B region 2 domain protein; DNA gyrase subunit B domain protein; TOPRIM domain protein; ATP-binding region ATPase domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; DNA gyrase subunit beta 6585 8914968 Nhal_0004 Nitrosococcus halophilus Nc4 DNA gyrase subunit beta YP_003525613.1 4168 D 472759 CDS YP_003525614.1 292490175 8914969 complement(6687..8009) 1 NC_013960.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mca:MCA1918 NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 8009 8914969 Nhal_0005 Nitrosococcus halophilus Nc4 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_003525614.1 6687 R 472759 CDS YP_003525615.1 292490176 8914970 8150..9562 1 NC_013960.1 PFAM: dihydropteroate synthase DHPS; KEGG: mca:MCA1245 pterin-binding domain-containing protein; dihydropteroate synthase DHPS 9562 8914970 Nhal_0006 Nitrosococcus halophilus Nc4 dihydropteroate synthase DHPS YP_003525615.1 8150 D 472759 CDS YP_003525616.1 292490177 8914971 9549..10133 1 NC_013960.1 PFAM: protein of unknown function DUF447; KEGG: mfa:Mfla_1580 hypothetical protein; hypothetical protein 10133 8914971 Nhal_0007 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525616.1 9549 D 472759 CDS YP_003525617.1 292490178 8914972 10130..10810 1 NC_013960.1 PFAM: protein of unknown function DUF556; KEGG: noc:Noc_0020 hypothetical protein; hypothetical protein 10810 8914972 Nhal_0008 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525617.1 10130 D 472759 CDS YP_003525618.1 292490179 8914973 complement(10929..12113) 1 NC_013960.1 KEGG: nmu:Nmul_A1535 hypothetical protein; hypothetical protein 12113 8914973 Nhal_0009 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525618.1 10929 R 472759 CDS YP_003525619.1 292490180 8914974 12577..14280 1 NC_013960.1 PFAM: multicopper oxidase type 3; multicopper oxidase type 1; multicopper oxidase type 2; KEGG: noc:Noc_2506 multicopper oxidase type 3; multicopper oxidase type 3 14280 8914974 Nhal_0010 Nitrosococcus halophilus Nc4 multicopper oxidase type 3 YP_003525619.1 12577 D 472759 CDS YP_003525620.1 292490181 8914975 complement(14406..15413) 1 NC_013960.1 PFAM: inositol phosphatase/fructose-16-bisphosphatase; KEGG: noc:Noc_0021 fructose-1,6-bisphosphatase; inositol phosphatase/fructose-16-bisphosphatase 15413 8914975 Nhal_0011 Nitrosococcus halophilus Nc4 inositol phosphatase/fructose-16-bisphosphatase YP_003525620.1 14406 R 472759 CDS YP_003525621.1 292490182 8914976 complement(15773..16597) 1 NC_013960.1 KEGG: noc:Noc_0022 formylmethanofuran dehydrogenase; TIGRFAM: formylmethanofuran dehydrogenase subunit C; PFAM: glutamate synthase subunit alpha domain protein; formylmethanofuran dehydrogenase subunit C 16597 8914976 Nhal_0012 Nitrosococcus halophilus Nc4 formylmethanofuran dehydrogenase subunit C YP_003525621.1 15773 R 472759 CDS YP_003525622.1 292490183 8914977 complement(16689..17585) 1 NC_013960.1 KEGG: mca:MCA2858 tetrahydromethanopterin formyltransferase; TIGRFAM: formylmethanofuran/tetrahydromethanopterin N-formyltransferase; PFAM: formylmethanofuran: tetrahydromethanopterin formyltransferase (Ftr); formylmethanofuran--tetrahydromethanopterin formyltransferase 17585 8914977 Nhal_0013 Nitrosococcus halophilus Nc4 formylmethanofuran--tetrahydromethanopterin formyltransferase YP_003525622.1 16689 R 472759 CDS YP_003525623.1 292490184 8914978 complement(17582..19249) 1 NC_013960.1 TIGRFAM: formylmethanofuran dehydrogenase subunit A; PFAM: amidohydrolase; KEGG: noc:Noc_0024 DNA/RNA non-specific endonuclease; formylmethanofuran dehydrogenase subunit A 19249 8914978 Nhal_0014 Nitrosococcus halophilus Nc4 formylmethanofuran dehydrogenase subunit A YP_003525623.1 17582 R 472759 CDS YP_003525624.1 292490185 8914979 complement(19284..20561) 1 NC_013960.1 TIGRFAM: formylmethanofuran dehydrogenase subunit B; KEGG: noc:Noc_0025 formylmethanofuran dehydrogenase; formylmethanofuran dehydrogenase subunit B 20561 8914979 Nhal_0015 Nitrosococcus halophilus Nc4 formylmethanofuran dehydrogenase subunit B YP_003525624.1 19284 R 472759 CDS YP_003525625.1 292490186 8914980 complement(20570..20947) 1 NC_013960.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: msl:Msil_2406 transcriptional coactivator/pterin dehydratase; transcriptional coactivator/pterin dehydratase 20947 8914980 Nhal_0016 Nitrosococcus halophilus Nc4 transcriptional coactivator/pterin dehydratase YP_003525625.1 20570 R 472759 CDS YP_003525626.1 292490187 8914981 complement(21012..21623) 1 NC_013960.1 PFAM: sporulation domain protein; KEGG: noc:Noc_0026 hypothetical protein; sporulation domain-containing protein 21623 8914981 Nhal_0017 Nitrosococcus halophilus Nc4 sporulation domain-containing protein YP_003525626.1 21012 R 472759 CDS YP_003525627.1 292490188 8914982 complement(21627..23384) 1 NC_013960.1 KEGG: noc:Noc_0027 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase; arginyl-tRNA synthetase 23384 8914982 Nhal_0018 Nitrosococcus halophilus Nc4 arginyl-tRNA synthetase YP_003525627.1 21627 R 472759 CDS YP_003525628.1 292490189 8914983 complement(23489..25702) 1 NC_013960.1 KEGG: noc:Noc_0028 primosome assembly protein PriA; TIGRFAM: primosomal protein N'; PFAM: DEAD/DEAH box helicase domain protein; helicase; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase; primosomal protein N' 25702 8914983 Nhal_0019 Nitrosococcus halophilus Nc4 primosomal protein N' YP_003525628.1 23489 R 472759 CDS YP_003525629.1 292490190 8914984 complement(25798..26358) 1 NC_013960.1 TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain protein; KEGG: noc:Noc_0029 DJ-1; DJ-1 family protein 26358 8914984 Nhal_0020 Nitrosococcus halophilus Nc4 DJ-1 family protein YP_003525629.1 25798 R 472759 CDS YP_003525630.1 292490191 8914985 complement(26481..27794) 1 NC_013960.1 KEGG: noc:Noc_0030 peptidase S41A; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; carboxyl-terminal protease 27794 8914985 Nhal_0021 Nitrosococcus halophilus Nc4 carboxyl-terminal protease YP_003525630.1 26481 R 472759 CDS YP_003525631.1 292490192 8914987 complement(28315..29868) 1 NC_013960.1 TIGRFAM: phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; PFAM: BPG-independent PGAM domain protein; metalloenzyme domain protein; KEGG: noc:Noc_0031 phosphoglyceromutase; phosphoglycerate mutase 29868 8914987 Nhal_0023 Nitrosococcus halophilus Nc4 phosphoglycerate mutase YP_003525631.1 28315 R 472759 CDS YP_003525632.1 292490193 8914988 30657..31388 1 NC_013960.1 PFAM: rhodanese; SMART: Rhodanese domain protein; KEGG: noc:Noc_0032 rhodanese-like protein; rhodanese 31388 8914988 Nhal_0024 Nitrosococcus halophilus Nc4 rhodanese YP_003525632.1 30657 D 472759 CDS YP_003525633.1 292490194 8914989 31392..31649 1 NC_013960.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: noc:Noc_0033 glutaredoxin GrxC; glutaredoxin 3 31649 8914989 Nhal_0025 Nitrosococcus halophilus Nc4 glutaredoxin 3 YP_003525633.1 31392 D 472759 CDS YP_003525634.1 292490195 8914990 31710..32213 1 NC_013960.1 TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB; KEGG: noc:Noc_0034 preprotein translocase subunit SecB; protein-export protein SecB 32213 8914990 Nhal_0026 Nitrosococcus halophilus Nc4 protein-export protein SecB YP_003525634.1 31710 D 472759 CDS YP_003525635.1 292490196 8914991 32236..33258 1 NC_013960.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: noc:Noc_0035 glycerol-3-phosphate dehydrogenase (NAD(P)+); glycerol-3-phosphate dehydrogenase (NAD(P)(+)) 33258 8914991 Nhal_0027 Nitrosococcus halophilus Nc4 glycerol-3-phosphate dehydrogenase (NAD(P)(+)) YP_003525635.1 32236 D 472759 CDS YP_003525636.1 292490197 8914992 33276..34238 1 NC_013960.1 KEGG: noc:Noc_0036 hypothetical protein; hypothetical protein 34238 8914992 Nhal_0028 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525636.1 33276 D 472759 CDS YP_003525637.1 292490198 8914993 complement(34233..35420) 1 NC_013960.1 PFAM: protein of unknown function DUF185; KEGG: noc:Noc_0037 hypothetical protein; hypothetical protein 35420 8914993 Nhal_0029 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525637.1 34233 R 472759 CDS YP_003525638.1 292490199 8914994 complement(35517..36005) 1 NC_013960.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: noc:Noc_0038 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 36005 8914994 Nhal_0030 Nitrosococcus halophilus Nc4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_003525638.1 35517 R 472759 CDS YP_003525639.1 292490200 8914995 complement(36011..36382) 1 NC_013960.1 TIGRFAM: dihydroneopterin aldolase; PFAM: dihydroneopterin aldolase; KEGG: noc:Noc_0039 dihydroneopterin aldolase family protein; dihydroneopterin aldolase 36382 8914995 Nhal_0031 Nitrosococcus halophilus Nc4 dihydroneopterin aldolase YP_003525639.1 36011 R 472759 CDS YP_003525640.1 292490201 8914996 36465..37070 1 NC_013960.1 PFAM: protein of unknown function DUF205; KEGG: noc:Noc_0040 hypothetical protein; hypothetical protein 37070 8914996 Nhal_0032 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525640.1 36465 D 472759 CDS YP_003525641.1 292490202 8914997 complement(37081..38088) 1 NC_013960.1 KEGG: noc:Noc_0041 O-sialoglycoprotein endopeptidase; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease; metalloendopeptidase, glycoprotease family 38088 8914997 Nhal_0033 Nitrosococcus halophilus Nc4 metalloendopeptidase, glycoprotease family YP_003525641.1 37081 R 472759 CDS YP_003525642.1 292490203 8914998 38360..38575 1 NC_013960.1 TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; KEGG: noc:Noc_0042 ribosomal protein S21; 30S ribosomal protein S21 38575 8914998 Nhal_0034 Nitrosococcus halophilus Nc4 30S ribosomal protein S21 YP_003525642.1 38360 D 472759 CDS YP_003525643.1 292490204 8914999 38615..39085 1 NC_013960.1 KEGG: noc:Noc_0043 hypothetical protein; hypothetical protein 39085 8914999 Nhal_0035 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525643.1 38615 D 472759 CDS YP_003525644.1 292490205 8915000 39193..40908 1 NC_013960.1 KEGG: noc:Noc_0044 DNA primase; TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase DnaG DnaB-binding; SMART: zinc finger CHC2-family protein; DNA primase DnaG DnaB-binding; Toprim sub domain protein; DNA primase 40908 8915000 Nhal_0036 Nitrosococcus halophilus Nc4 DNA primase YP_003525644.1 39193 D 472759 CDS YP_003525645.1 292490206 8915001 41043..42851 1 NC_013960.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 non-essential domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 1.1 domain protein; sigma-70 region 4 domain protein; KEGG: noc:Noc_0045 hypothetical protein; RNA polymerase sigma factor RpoD 42851 8915001 Nhal_0037 Nitrosococcus halophilus Nc4 RNA polymerase sigma factor RpoD YP_003525645.1 41043 D 472759 CDS YP_003525646.1 292490207 8915003 43607..43987 1 NC_013960.1 hypothetical protein 43987 8915003 Nhal_0038 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525646.1 43607 D 472759 CDS YP_003525647.1 292490208 8915004 complement(44156..44359) 1 NC_013960.1 KEGG: mpt:Mpe_B0143 nuclease; nuclease 44359 8915004 Nhal_0039 Nitrosococcus halophilus Nc4 nuclease YP_003525647.1 44156 R 472759 CDS YP_003525648.1 292490209 8915005 45124..45558 1 NC_013960.1 KEGG: tau:Tola_2854 transcriptional regulator, XRE family; hypothetical protein 45558 8915005 Nhal_0040 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525648.1 45124 D 472759 CDS YP_003525649.1 292490210 8915006 45562..46086 1 NC_013960.1 KEGG: tau:Tola_2853 hypothetical protein; hypothetical protein 46086 8915006 Nhal_0041 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525649.1 45562 D 472759 CDS YP_003525650.1 292490211 8915007 complement(46354..48051) 1 NC_013960.1 PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: noc:Noc_3064 sodium/hydrogen exchanger; sodium/hydrogen exchanger 48051 8915007 Nhal_0042 Nitrosococcus halophilus Nc4 sodium/hydrogen exchanger YP_003525650.1 46354 R 472759 CDS YP_003525651.1 292490212 8915008 complement(48447..49853) 1 NC_013960.1 PFAM: amino acid permease-associated region; KEGG: noc:Noc_3063 amino acid permease-associated region; amino acid permease-associated protein 49853 8915008 Nhal_0043 Nitrosococcus halophilus Nc4 amino acid permease-associated protein YP_003525651.1 48447 R 472759 CDS YP_003525652.1 292490213 8915009 complement(49932..51530) 1 NC_013960.1 PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: maq:Maqu_3453 sodium/hydrogen exchanger; sodium/hydrogen exchanger 51530 8915009 Nhal_0044 Nitrosococcus halophilus Nc4 sodium/hydrogen exchanger YP_003525652.1 49932 R 472759 CDS YP_003525653.1 292490214 8915010 complement(52257..52469) 1 NC_013960.1 KEGG: noc:Noc_3062 hypothetical protein; hypothetical protein 52469 8915010 Nhal_0045 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525653.1 52257 R 472759 CDS YP_003525654.1 292490215 8915011 52651..52998 1 NC_013960.1 PFAM: pentapeptide repeat protein; KEGG: noc:Noc_3061 pentapeptide repeat-containing protein; pentapeptide repeat-containing protein 52998 8915011 Nhal_0046 Nitrosococcus halophilus Nc4 pentapeptide repeat-containing protein YP_003525654.1 52651 D 472759 CDS YP_003525655.1 292490216 8915012 complement(52995..53747) 1 NC_013960.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: noc:Noc_3060 sec-independent periplasmic protein translocase, TatC; Sec-independent protein translocase, TatC subunit 53747 8915012 Nhal_0047 Nitrosococcus halophilus Nc4 Sec-independent protein translocase, TatC subunit YP_003525655.1 52995 R 472759 CDS YP_003525656.1 292490217 8915013 complement(53734..54045) 1 NC_013960.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: noc:Noc_3059 twin-arginine translocation protein TatB; twin-arginine translocation proteinsubunit TatB 54045 8915013 Nhal_0048 Nitrosococcus halophilus Nc4 twin-arginine translocation proteinsubunit TatB YP_003525656.1 53734 R 472759 CDS YP_003525657.1 292490218 8915014 complement(54065..54340) 1 NC_013960.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: noc:Noc_3058 twin-arginine translocation protein TatA/E; twin-arginine translocation protein, TatA/E family subunit 54340 8915014 Nhal_0049 Nitrosococcus halophilus Nc4 twin-arginine translocation protein, TatA/E family subunit YP_003525657.1 54065 R 472759 CDS YP_003525658.1 292490219 8915015 complement(54422..54763) 1 NC_013960.1 PFAM: histidine triad (HIT) protein; KEGG: noc:Noc_3057 histidine triad (HIT) protein; histidine triad (HIT) protein 54763 8915015 Nhal_0050 Nitrosococcus halophilus Nc4 histidine triad (HIT) protein YP_003525658.1 54422 R 472759 CDS YP_003525659.1 292490220 8915016 complement(54756..55088) 1 NC_013960.1 TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: noc:Noc_3056 phosphoribosyl-ATP pyrophosphohydrolase; phosphoribosyl-ATP diphosphatase 55088 8915016 Nhal_0051 Nitrosococcus halophilus Nc4 phosphoribosyl-ATP diphosphatase YP_003525659.1 54756 R 472759 CDS YP_003525660.1 292490221 8915017 complement(55085..55477) 1 NC_013960.1 PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: noc:Noc_3055 phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-AMP cyclohydrolase 55477 8915017 Nhal_0052 Nitrosococcus halophilus Nc4 phosphoribosyl-AMP cyclohydrolase YP_003525660.1 55085 R 472759 CDS YP_003525661.1 292490222 8915018 complement(55480..56253) 1 NC_013960.1 TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; KEGG: noc:Noc_3054 imidazole glycerol phosphate synthase subunit HisF; imidazoleglycerol phosphate synthase, cyclase subunit 56253 8915018 Nhal_0053 Nitrosococcus halophilus Nc4 imidazoleglycerol phosphate synthase, cyclase subunit YP_003525661.1 55480 R 472759 CDS YP_003525662.1 292490223 8915019 complement(56263..57003) 1 NC_013960.1 KEGG: noc:Noc_3053 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase 57003 8915019 Nhal_0054 Nitrosococcus halophilus Nc4 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YP_003525662.1 56263 R 472759 CDS YP_003525663.1 292490224 8915020 complement(57059..57688) 1 NC_013960.1 TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; KEGG: noc:Noc_3052 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 57688 8915020 Nhal_0055 Nitrosococcus halophilus Nc4 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit YP_003525663.1 57059 R 472759 CDS YP_003525664.1 292490225 8915021 complement(57710..58303) 1 NC_013960.1 PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: noc:Noc_3051 imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase 58303 8915021 Nhal_0056 Nitrosococcus halophilus Nc4 imidazoleglycerol-phosphate dehydratase YP_003525664.1 57710 R 472759 CDS YP_003525665.1 292490226 8915022 complement(58471..58683) 1 NC_013960.1 KEGG: pfo:Pfl01_3109 hypothetical protein; hypothetical protein 58683 8915022 Nhal_0057 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525665.1 58471 R 472759 CDS YP_003525666.1 292490227 8915023 58978..59298 1 NC_013960.1 KEGG: noc:Noc_3050 cytochrome C, class I; cytochrome C, class I 59298 8915023 Nhal_0058 Nitrosococcus halophilus Nc4 cytochrome C, class I YP_003525666.1 58978 D 472759 CDS YP_003525667.1 292490228 8915024 59353..59691 1 NC_013960.1 PFAM: cytochrome C class I; KEGG: noc:Noc_3049 cytochrome c, class I; cytochrome C class I 59691 8915024 Nhal_0059 Nitrosococcus halophilus Nc4 cytochrome C class I YP_003525667.1 59353 D 472759 CDS YP_003525668.1 292490229 8915025 59767..60327 1 NC_013960.1 KEGG: noc:Noc_3048 hypothetical protein; hypothetical protein 60327 8915025 Nhal_0060 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525668.1 59767 D 472759 CDS YP_003525669.1 292490230 8915026 61063..61893 1 NC_013960.1 TIGRFAM: cytochrome C oxidase subunit II; PFAM: cytochrome C oxidase subunit II; cytochrome C oxidase subunit II transmembrane region; KEGG: noc:Noc_3047 cytochrome C oxidase subunit II; cytochrome C oxidase subunit II 61893 8915026 Nhal_0061 Nitrosococcus halophilus Nc4 cytochrome C oxidase subunit II YP_003525669.1 61063 D 472759 CDS YP_003525670.1 292490231 8915027 62061..63650 1 NC_013960.1 KEGG: noc:Noc_3046 cytochrome C oxidase; TIGRFAM: cytochrome C oxidase subunit I; PFAM: cytochrome C oxidase subunit I; cytochrome C oxidase subunit I 63650 8915027 Nhal_0062 Nitrosococcus halophilus Nc4 cytochrome C oxidase subunit I YP_003525670.1 62061 D 472759 CDS YP_003525671.1 292490232 8915028 63748..64377 1 NC_013960.1 PFAM: cytochrome C oxidase assembly protein CtaG/Cox11; KEGG: noc:Noc_3045 cytochrome C oxidase assembly protein; cytochrome C oxidase assembly protein CtaG/Cox11 64377 8915028 Nhal_0063 Nitrosococcus halophilus Nc4 cytochrome C oxidase assembly protein CtaG/Cox11 YP_003525671.1 63748 D 472759 CDS YP_003525672.1 292490233 8915029 64461..65327 1 NC_013960.1 PFAM: cytochrome C oxidase subunit III; KEGG: noc:Noc_3044 cytochrome C oxidase subunit III; cytochrome-c oxidase 65327 8915029 Nhal_0064 Nitrosococcus halophilus Nc4 cytochrome-c oxidase YP_003525672.1 64461 D 472759 CDS YP_003525673.1 292490234 8915030 complement(65414..65659) 1 NC_013960.1 KEGG: noc:Noc_3043 hypothetical protein; hypothetical protein 65659 8915030 Nhal_0065 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525673.1 65414 R 472759 CDS YP_003525674.1 292490235 8915031 65921..66631 1 NC_013960.1 KEGG: noc:Noc_3042 hypothetical protein; hypothetical protein 66631 8915031 Nhal_0066 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525674.1 65921 D 472759 CDS YP_003525675.1 292490236 8915032 66648..67271 1 NC_013960.1 KEGG: noc:Noc_3041 hypothetical protein; hypothetical protein 67271 8915032 Nhal_0067 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525675.1 66648 D 472759 CDS YP_003525676.1 292490237 8915033 67281..68309 1 NC_013960.1 PFAM: cytochrome oxidase assembly; KEGG: noc:Noc_3040 cytochrome oxidase assembly; cytochrome oxidase assembly 68309 8915033 Nhal_0068 Nitrosococcus halophilus Nc4 cytochrome oxidase assembly YP_003525676.1 67281 D 472759 CDS YP_003525677.1 292490238 8915034 68306..69205 1 NC_013960.1 TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; KEGG: noc:Noc_3039 protoheme IX farnesyltransferase; protoheme IX farnesyltransferase 69205 8915034 Nhal_0069 Nitrosococcus halophilus Nc4 protoheme IX farnesyltransferase YP_003525677.1 68306 D 472759 CDS YP_003525678.1 292490239 8915035 complement(69357..70892) 1 NC_013960.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; polysaccharide biosynthesis protein; KEGG: noc:Noc_3038 virulence factor MviN-like; integral membrane protein MviN 70892 8915035 Nhal_0070 Nitrosococcus halophilus Nc4 integral membrane protein MviN YP_003525678.1 69357 R 472759 CDS YP_003525679.1 292490240 8915036 71029..71292 1 NC_013960.1 TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; KEGG: noc:Noc_3037 ribosomal protein S20p; 30S ribosomal protein S20 71292 8915036 Nhal_0071 Nitrosococcus halophilus Nc4 30S ribosomal protein S20 YP_003525679.1 71029 D 472759 CDS YP_003525680.1 292490241 8915037 complement(71295..72422) 1 NC_013960.1 KEGG: noc:Noc_3036 gamma-glutamyl kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; SMART: PUA domain containing protein; glutamate 5-kinase 72422 8915037 Nhal_0072 Nitrosococcus halophilus Nc4 glutamate 5-kinase YP_003525680.1 71295 R 472759 CDS YP_003525681.1 292490242 8915038 complement(72443..73468) 1 NC_013960.1 TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; KEGG: noc:Noc_3035 GTPase ObgE; GTP-binding protein Obg/CgtA 73468 8915038 Nhal_0073 Nitrosococcus halophilus Nc4 GTP-binding protein Obg/CgtA YP_003525681.1 72443 R 472759 CDS YP_003525682.1 292490243 8915039 complement(73577..73834) 1 NC_013960.1 TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: noc:Noc_3034 50S ribosomal protein L27; 50S ribosomal protein L27 73834 8915039 Nhal_0074 Nitrosococcus halophilus Nc4 50S ribosomal protein L27 YP_003525682.1 73577 R 472759 CDS YP_003525683.1 292490244 8915040 complement(73854..74168) 1 NC_013960.1 TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: noc:Noc_3033 ribosomal protein L21; 50S ribosomal protein L21 74168 8915040 Nhal_0075 Nitrosococcus halophilus Nc4 50S ribosomal protein L21 YP_003525683.1 73854 R 472759 CDS YP_003525684.1 292490245 8915041 74431..75399 1 NC_013960.1 PFAM: polyprenyl synthetase; KEGG: noc:Noc_3032 trans-hexaprenyltranstransferase; trans-hexaprenyltranstransferase 75399 8915041 Nhal_0076 Nitrosococcus halophilus Nc4 trans-hexaprenyltranstransferase YP_003525684.1 74431 D 472759 CDS YP_003525685.1 292490246 8915043 75643..76068 1 NC_013960.1 PFAM: protein of unknown function DUF55; KEGG: btr:Btr_2586 hypothetical protein; hypothetical protein 76068 8915043 Nhal_0077 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525685.1 75643 D 472759 CDS YP_003525686.1 292490247 8915044 complement(76220..76723) 1 NC_013960.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: ngk:NGK_0649 phage associated protein; hypothetical protein 76723 8915044 Nhal_0078 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525686.1 76220 R 472759 CDS YP_003525687.1 292490248 8915046 78709..80304 1 NC_013960.1 PFAM: type III restriction protein res subunit; helicase domain protein; DEAD/DEAH box helicase; SMART: DEAD-like helicase ; helicase; KEGG: nha:Nham_3708 helicase-like; type III restriction protein res subunit 80304 8915046 Nhal_0080 Nitrosococcus halophilus Nc4 type III restriction protein res subunit YP_003525687.1 78709 D 472759 CDS YP_003525688.1 292490249 8915047 80291..82120 1 NC_013960.1 KEGG: rpe:RPE_2170 hypothetical protein; hypothetical protein 82120 8915047 Nhal_0081 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525688.1 80291 D 472759 CDS YP_003525689.1 292490250 8915048 82124..83074 1 NC_013960.1 KEGG: ara:Arad_12002 hypothetical protein; hypothetical protein 83074 8915048 Nhal_0082 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525689.1 82124 D 472759 CDS YP_003525690.1 292490251 8915049 83187..85517 1 NC_013960.1 PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: sfr:Sfri_2088 protein of unknown function DUF262; hypothetical protein 85517 8915049 Nhal_0083 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525690.1 83187 D 472759 CDS YP_003525691.1 292490252 8915050 complement(85522..86358) 1 NC_013960.1 KEGG: pna:Pnap_4585 phosphoadenosine phosphosulfate reductase; phosphoadenosine phosphosulfate reductase 86358 8915050 Nhal_0084 Nitrosococcus halophilus Nc4 phosphoadenosine phosphosulfate reductase YP_003525691.1 85522 R 472759 CDS YP_003525692.1 292490253 8915051 complement(86358..89762) 1 NC_013960.1 KEGG: eca:ECA2875 ATP-binding protein; ATP-binding protein 89762 8915051 Nhal_0085 Nitrosococcus halophilus Nc4 ATP-binding protein YP_003525692.1 86358 R 472759 CDS YP_003525693.1 292490254 8915052 complement(89762..90721) 1 NC_013960.1 KEGG: eca:ECA2874 hypothetical protein; hypothetical protein 90721 8915052 Nhal_0086 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525693.1 89762 R 472759 CDS YP_003525694.1 292490255 8915053 90879..92060 1 NC_013960.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rcm:A1E_02335 cysteine desulfurase; Cysteine desulfurase 92060 8915053 Nhal_0087 Nitrosococcus halophilus Nc4 Cysteine desulfurase YP_003525694.1 90879 D 472759 CDS YP_003525695.1 292490256 8915054 92187..94745 1 NC_013960.1 PFAM: peptidase M15A; KEGG: mpt:Mpe_B0183 hypothetical protein; peptidase M15A 94745 8915054 Nhal_0088 Nitrosococcus halophilus Nc4 peptidase M15A YP_003525695.1 92187 D 472759 CDS YP_003525696.1 292490257 8915055 complement(94924..95820) 1 NC_013960.1 KEGG: noc:Noc_0158 hypothetical protein; hypothetical protein 95820 8915055 Nhal_0089 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525696.1 94924 R 472759 CDS YP_003525697.1 292490258 8915056 96266..96910 1 NC_013960.1 PFAM: TetR family transcriptional regulator; KEGG: noc:Noc_0199 TetR family regulatory protein; TetR family transcriptional regulator 96910 8915056 Nhal_0090 Nitrosococcus halophilus Nc4 TetR family transcriptional regulator YP_003525697.1 96266 D 472759 CDS YP_003525698.1 292490259 8915057 96989..98086 1 NC_013960.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: noc:Noc_0200 secretion protein HlyD; RND family efflux transporter MFP subunit 98086 8915057 Nhal_0091 Nitrosococcus halophilus Nc4 RND family efflux transporter MFP subunit YP_003525698.1 96989 D 472759 CDS YP_003525699.1 292490260 8915058 98158..101262 1 NC_013960.1 PFAM: acriflavin resistance protein; KEGG: noc:Noc_0201 acriflavin resistance protein; acriflavin resistance protein 101262 8915058 Nhal_0092 Nitrosococcus halophilus Nc4 acriflavin resistance protein YP_003525699.1 98158 D 472759 CDS YP_003525700.1 292490261 8915059 101374..102846 1 NC_013960.1 KEGG: noc:Noc_2911 hypothetical protein; hypothetical protein 102846 8915059 Nhal_0093 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525700.1 101374 D 472759 CDS YP_003525701.1 292490262 8915060 complement(103242..104909) 1 NC_013960.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: noc:Noc_0101 ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase 104909 8915060 Nhal_0094 Nitrosococcus halophilus Nc4 ferredoxin-dependent glutamate synthase YP_003525701.1 103242 R 472759 CDS YP_003525702.1 292490263 8915061 complement(104926..106389) 1 NC_013960.1 KEGG: noc:Noc_0100 glycogen synthase; TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1; glycogen/starch synthase, ADP-glucose type 106389 8915061 Nhal_0095 Nitrosococcus halophilus Nc4 glycogen/starch synthase, ADP-glucose type YP_003525702.1 104926 R 472759 CDS YP_003525703.1 292490264 8915062 complement(106374..108011) 1 NC_013960.1 PFAM: Domain of unknown function DUF1957; glycoside hydrolase family 57; KEGG: noc:Noc_0099 glycoside hydrolase family protein; hypothetical protein 108011 8915062 Nhal_0096 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525703.1 106374 R 472759 CDS YP_003525704.1 292490265 8915063 complement(108018..108680) 1 NC_013960.1 KEGG: noc:Noc_0098 hypothetical protein; hypothetical protein 108680 8915063 Nhal_0097 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525704.1 108018 R 472759 CDS YP_003525705.1 292490266 8915064 108700..109068 1 NC_013960.1 hypothetical protein 109068 8915064 Nhal_0098 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525705.1 108700 D 472759 CDS YP_003525706.1 292490267 8915065 109198..112029 1 NC_013960.1 KEGG: noc:Noc_0111 alpha-ketoglutarate decarboxylase; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: transketolase; dehydrogenase E1 component; 2-oxoglutarate dehydrogenase, E1 subunit 112029 8915065 Nhal_0099 Nitrosococcus halophilus Nc4 2-oxoglutarate dehydrogenase, E1 subunit YP_003525706.1 109198 D 472759 CDS YP_003525707.1 292490268 8915066 112045..113340 1 NC_013960.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: dehydrogenase; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: noc:Noc_0112 dihydrolipoamide succinyltransferase; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase 113340 8915066 Nhal_0100 Nitrosococcus halophilus Nc4 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase YP_003525707.1 112045 D 472759 CDS YP_003525708.1 292490269 8915067 113362..114795 1 NC_013960.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: noc:Noc_0113 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase 114795 8915067 Nhal_0101 Nitrosococcus halophilus Nc4 dihydrolipoamide dehydrogenase YP_003525708.1 113362 D 472759 CDS YP_003525709.1 292490270 8915068 complement(114792..115397) 1 NC_013960.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: met:M446_5868 pyridoxamine 5'-phosphate oxidase-related FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 115397 8915068 Nhal_0102 Nitrosococcus halophilus Nc4 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_003525709.1 114792 R 472759 CDS YP_003525710.1 292490271 8915069 complement(115529..116983) 1 NC_013960.1 PFAM: Di-haem cytochrome C peroxidase; KEGG: noc:Noc_0114 di-haem cytochrome C peroxidase; cytochrome-c peroxidase 116983 8915069 Nhal_0103 Nitrosococcus halophilus Nc4 cytochrome-c peroxidase YP_003525710.1 115529 R 472759 CDS YP_003525711.1 292490272 8915070 complement(117047..118345) 1 NC_013960.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: noc:Noc_0117 hypothetical protein; hypothetical protein 118345 8915070 Nhal_0104 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525711.1 117047 R 472759 CDS YP_003525712.1 292490273 8915071 complement(118349..119770) 1 NC_013960.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; KEGG: noc:Noc_0118 hypothetical protein; hypothetical protein 119770 8915071 Nhal_0105 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525712.1 118349 R 472759 CDS YP_003525713.1 292490274 8915072 119888..120490 1 NC_013960.1 KEGG: noc:Noc_0119 hypothetical protein; hypothetical protein 120490 8915072 Nhal_0106 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525713.1 119888 D 472759 CDS YP_003525714.1 292490275 8915073 120918..121355 1 NC_013960.1 KEGG: noc:Noc_0120 hypothetical protein; hypothetical protein 121355 8915073 Nhal_0107 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525714.1 120918 D 472759 CDS YP_003525715.1 292490276 8915074 complement(121412..121786) 1 NC_013960.1 KEGG: noc:Noc_1917 hypothetical protein; hypothetical protein 121786 8915074 Nhal_0108 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525715.1 121412 R 472759 CDS YP_003525716.1 292490277 8915075 122113..123561 1 NC_013960.1 PFAM: beta-lactamase; RNA-metabolising metallo-beta-lactamase; KEGG: son:SO_0541 metallo-beta-lactamase family protein; beta-lactamase 123561 8915075 Nhal_0109 Nitrosococcus halophilus Nc4 beta-lactamase YP_003525716.1 122113 D 472759 CDS YP_003525717.1 292490278 8915076 complement(123629..124672) 1 NC_013960.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: noc:Noc_0104 membrane-bound metal-dependent hydrolase; membrane-bound metal-dependent hydrolase 124672 8915076 Nhal_0110 Nitrosococcus halophilus Nc4 membrane-bound metal-dependent hydrolase YP_003525717.1 123629 R 472759 CDS YP_003525718.1 292490279 8915077 complement(124691..125545) 1 NC_013960.1 KEGG: noc:Noc_0105 hypothetical protein; hypothetical protein 125545 8915077 Nhal_0111 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525718.1 124691 R 472759 CDS YP_003525719.1 292490280 8915078 complement(125718..126215) 1 NC_013960.1 hypothetical protein 126215 8915078 Nhal_0112 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525719.1 125718 R 472759 CDS YP_003525720.1 292490281 8915079 complement(126606..127514) 1 NC_013960.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: noc:Noc_0107 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 127514 8915079 Nhal_0113 Nitrosococcus halophilus Nc4 NAD-dependent epimerase/dehydratase YP_003525720.1 126606 R 472759 CDS YP_003525721.1 292490282 8915080 complement(127669..129147) 1 NC_013960.1 KEGG: dar:Daro_3107 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; hypothetical protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS sensor protein 129147 8915080 Nhal_0114 Nitrosococcus halophilus Nc4 PAS sensor protein YP_003525721.1 127669 R 472759 CDS YP_003525722.1 292490283 8915081 complement(129549..129761) 1 NC_013960.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: noc:Noc_2609 cold-shock protein, DNA-binding; Cold-shock protein DNA-binding protein 129761 8915081 Nhal_0115 Nitrosococcus halophilus Nc4 Cold-shock protein DNA-binding protein YP_003525722.1 129549 R 472759 CDS YP_003525723.1 292490284 8915082 complement(130366..130575) 1 NC_013960.1 PFAM: protein of unknown function UPF0150; KEGG: aeh:Mlg_2272 hypothetical protein; hypothetical protein 130575 8915082 Nhal_0116 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525723.1 130366 R 472759 CDS YP_003525724.1 292490285 8915083 complement(130588..130773) 1 NC_013960.1 PFAM: YcfA family protein; KEGG: aeh:Mlg_2273 YcfA family protein; YcfA family protein 130773 8915083 Nhal_0117 Nitrosococcus halophilus Nc4 YcfA family protein YP_003525724.1 130588 R 472759 CDS YP_003525725.1 292490286 8915085 complement(131623..131886) 1 NC_013960.1 TIGRFAM: addiction module toxin, Txe/YoeB family; addiction module toxin, RelE/StbE family; PFAM: Addiction module toxin Txe/YoeB; plasmid stabilization system; KEGG: aeh:Mlg_1786 addiction module antitoxin; Txe/YoeB family addiction module toxin 131886 8915085 Nhal_0119 Nitrosococcus halophilus Nc4 Txe/YoeB family addiction module toxin YP_003525725.1 131623 R 472759 CDS YP_003525726.1 292490287 8915086 complement(131883..132125) 1 NC_013960.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: aeh:Mlg_1787 prevent-host-death family protein; prevent-host-death family protein 132125 8915086 Nhal_0120 Nitrosococcus halophilus Nc4 prevent-host-death family protein YP_003525726.1 131883 R 472759 CDS YP_003525727.1 292490288 8915087 complement(132229..132534) 1 NC_013960.1 KEGG: maq:Maqu_2675 hypothetical protein; hypothetical protein 132534 8915087 Nhal_0121 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525727.1 132229 R 472759 CDS YP_003525728.1 292490289 8915088 complement(132531..132809) 1 NC_013960.1 KEGG: maq:Maqu_2676 hypothetical protein; hypothetical protein 132809 8915088 Nhal_0122 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525728.1 132531 R 472759 CDS YP_003525729.1 292490290 8915089 complement(132956..133438) 1 NC_013960.1 PFAM: protein of unknown function DUF1568; KEGG: noc:Noc_1856 hypothetical protein; hypothetical protein 133438 8915089 Nhal_0123 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525729.1 132956 R 472759 CDS YP_003525730.1 292490291 8915090 complement(133537..133797) 1 NC_013960.1 KEGG: tgr:Tgr7_3145 hypothetical protein; hypothetical protein 133797 8915090 Nhal_0124 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525730.1 133537 R 472759 CDS YP_003525731.1 292490292 8915091 complement(133757..133996) 1 NC_013960.1 KEGG: sbn:Sbal195_4572 hypothetical protein; hypothetical protein 133996 8915091 Nhal_0125 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525731.1 133757 R 472759 CDS YP_003525732.1 292490293 8915092 complement(134132..134398) 1 NC_013960.1 KEGG: gur:Gura_3956 hypothetical protein; hypothetical protein 134398 8915092 Nhal_0126 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525732.1 134132 R 472759 CDS YP_003525733.1 292490294 8915094 complement(135231..136055) 1 NC_013960.1 PFAM: protein of unknown function DUF1555; KEGG: reh:H16_B0324 fumarylacetoacetate hydrolase; hypothetical protein 136055 8915094 Nhal_0128 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525733.1 135231 R 472759 CDS YP_003525734.1 292490295 8915096 137705..138355 1 NC_013960.1 KEGG: noc:Noc_0079 DNA-3-methyladenine glycosylase II; TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); DNA-3-methyladenine glycosylase 138355 8915096 Nhal_0130 Nitrosococcus halophilus Nc4 DNA-3-methyladenine glycosylase YP_003525734.1 137705 D 472759 CDS YP_003525735.1 292490296 8915097 138488..144052 1 NC_013960.1 KEGG: noc:Noc_0078 excinuclease ABC subunit A; TIGRFAM: excinuclease ABC subunit A; PFAM: ABC transporter; SMART: ATPase AAA; excinuclease ABC subunit A 144052 8915097 Nhal_0131 Nitrosococcus halophilus Nc4 excinuclease ABC subunit A YP_003525735.1 138488 D 472759 CDS YP_003525736.1 292490297 8915098 144075..144860 1 NC_013960.1 PFAM: protein of unknown function DUF427; KEGG: mlo:mll2277 hypothetical protein; hypothetical protein 144860 8915098 Nhal_0132 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525736.1 144075 D 472759 CDS YP_003525737.1 292490298 8915099 144965..145570 1 NC_013960.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce5025 hypothetical protein; hypothetical protein 145570 8915099 Nhal_0133 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525737.1 144965 D 472759 CDS YP_003525738.1 292490299 8915100 complement(145834..147093) 1 NC_013960.1 KEGG: ppd:Ppro_2173 hypothetical protein; hypothetical protein 147093 8915100 Nhal_0134 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525738.1 145834 R 472759 CDS YP_003525739.1 292490300 8915101 complement(147134..147820) 1 NC_013960.1 PFAM: peptidase C39 bacteriocin processing; KEGG: bte:BTH_I0933 C39 family peptidase; peptidase C39 bacteriocin processing 147820 8915101 Nhal_0135 Nitrosococcus halophilus Nc4 peptidase C39 bacteriocin processing YP_003525739.1 147134 R 472759 CDS YP_003525740.1 292490301 8915102 complement(148175..148537) 1 NC_013960.1 KEGG: bcj:BCAS0236 haemagglutinin-related autotransporter protein; hemagglutinin-related autotransporter protein 148537 8915102 Nhal_0136 Nitrosococcus halophilus Nc4 hemagglutinin-related autotransporter protein YP_003525740.1 148175 R 472759 CDS YP_003525741.1 292490302 8915103 complement(148591..148878) 1 NC_013960.1 hypothetical protein 148878 8915103 Nhal_0137 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525741.1 148591 R 472759 CDS YP_003525742.1 292490303 8915104 complement(149058..149525) 1 NC_013960.1 KEGG: YALI0A00374p; hypothetical protein 149525 8915104 Nhal_0138 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525742.1 149058 R 472759 CDS YP_003525743.1 292490304 8915105 150120..150596 1 NC_013960.1 KEGG: sde:Sde_0650 RhoGEF guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases-like; hypothetical protein 150596 8915105 Nhal_0139 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525743.1 150120 D 472759 CDS YP_003525744.1 292490305 8915106 complement(151548..153239) 1 NC_013960.1 hypothetical protein 153239 8915106 Nhal_0140 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525744.1 151548 R 472759 CDS YP_003525745.1 292490306 8915107 153449..154735 1 NC_013960.1 PFAM: protein of unknown function DUF1704; KEGG: psa:PST_2753 hypothetical protein; hypothetical protein 154735 8915107 Nhal_0141 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525745.1 153449 D 472759 CDS YP_003525746.1 292490307 8915108 complement(154799..155677) 1 NC_013960.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: noc:Noc_2776 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 155677 8915108 Nhal_0142 Nitrosococcus halophilus Nc4 NAD-dependent epimerase/dehydratase YP_003525746.1 154799 R 472759 CDS YP_003525747.1 292490308 8915110 complement(156134..157303) 1 NC_013960.1 PFAM: fatty acid desaturase; KEGG: noc:Noc_2775 fatty acid desaturase; fatty acid desaturase 157303 8915110 Nhal_0144 Nitrosococcus halophilus Nc4 fatty acid desaturase YP_003525747.1 156134 R 472759 CDS YP_003525748.1 292490309 8915111 complement(158017..158301) 1 NC_013960.1 KEGG: reh:H16_A2697 hypothetical protein; hypothetical protein 158301 8915111 Nhal_0145 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525748.1 158017 R 472759 CDS YP_003525749.1 292490310 8915112 158639..160243 1 NC_013960.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; GCN5-related N-acetyltransferase; KEGG: noc:Noc_2774 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 160243 8915112 Nhal_0146 Nitrosococcus halophilus Nc4 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_003525749.1 158639 D 472759 CDS YP_003525750.1 292490311 8915113 complement(160256..160525) 1 NC_013960.1 KEGG: bpy:Bphyt_7239 hypothetical protein; hypothetical protein 160525 8915113 Nhal_0147 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525750.1 160256 R 472759 CDS YP_003525751.1 292490312 8915114 complement(160666..160950) 1 NC_013960.1 KEGG: reh:H16_A2695 hypothetical protein; hypothetical protein 160950 8915114 Nhal_0148 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525751.1 160666 R 472759 CDS YP_003525752.1 292490313 8915115 complement(161496..163154) 1 NC_013960.1 PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; KEGG: noc:Noc_2773 ABC transporter ATPase; ABC transporter 163154 8915115 Nhal_0149 Nitrosococcus halophilus Nc4 ABC transporter YP_003525752.1 161496 R 472759 CDS YP_003525753.1 292490314 8915116 complement(163178..164371) 1 NC_013960.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: noc:Noc_2772 ABC transporter inner membrane subunit; binding-protein-dependent transporters inner membrane component 164371 8915116 Nhal_0150 Nitrosococcus halophilus Nc4 binding-protein-dependent transporters inner membrane component YP_003525753.1 163178 R 472759 CDS YP_003525754.1 292490315 8915117 complement(164375..165754) 1 NC_013960.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: noc:Noc_2771 ABC transporter inner membrane subunit; binding-protein-dependent transporters inner membrane component 165754 8915117 Nhal_0151 Nitrosococcus halophilus Nc4 binding-protein-dependent transporters inner membrane component YP_003525754.1 164375 R 472759 CDS YP_003525755.1 292490316 8915118 complement(165773..167632) 1 NC_013960.1 PFAM: extracellular solute-binding protein family 5; KEGG: noc:Noc_2770 extracellular solute-binding protein; family 5 extracellular solute-binding protein 167632 8915118 Nhal_0152 Nitrosococcus halophilus Nc4 family 5 extracellular solute-binding protein YP_003525755.1 165773 R 472759 CDS YP_003525756.1 292490317 8915119 complement(167952..168245) 1 NC_013960.1 PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: noc:Noc_2769 RNA-binding protein, RNP-1; RNP-1 like RNA-binding protein 168245 8915119 Nhal_0153 Nitrosococcus halophilus Nc4 RNP-1 like RNA-binding protein YP_003525756.1 167952 R 472759 CDS YP_003525757.1 292490318 8915120 168614..169594 1 NC_013960.1 KEGG: bam:Bamb_4254 hypothetical protein; hypothetical protein 169594 8915120 Nhal_0154 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525757.1 168614 D 472759 CDS YP_003525758.1 292490319 8915121 169869..171539 1 NC_013960.1 KEGG: bgl:bglu_1g28490 ATP-dependent endonuclease of the OLD family-like protein; ATP-dependent endonuclease of the OLD family-like protein 171539 8915121 Nhal_0155 Nitrosococcus halophilus Nc4 ATP-dependent endonuclease of the OLD family-like protein YP_003525758.1 169869 D 472759 CDS YP_003525759.1 292490320 8915122 172107..172544 1 NC_013960.1 PFAM: protein of unknown function DUF29; KEGG: noc:Noc_0766 hypothetical protein; hypothetical protein 172544 8915122 Nhal_0156 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525759.1 172107 D 472759 CDS YP_003525760.1 292490321 8915123 172676..173029 1 NC_013960.1 KEGG: afr:AFE_0501 hypothetical protein; hypothetical protein 173029 8915123 Nhal_0157 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525760.1 172676 D 472759 CDS YP_003525761.1 292490322 8915128 174267..174704 1 NC_013960.1 PFAM: protein of unknown function DUF29; KEGG: noc:Noc_0766 hypothetical protein; hypothetical protein 174704 8915128 Nhal_0162 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525761.1 174267 D 472759 CDS YP_003525762.1 292490323 8915130 175031..175489 1 NC_013960.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: noc:Noc_2923 FxsA cytoplasmic membrane protein; FxsA cytoplasmic membrane protein 175489 8915130 Nhal_0163 Nitrosococcus halophilus Nc4 FxsA cytoplasmic membrane protein YP_003525762.1 175031 D 472759 CDS YP_003525763.1 292490324 8915131 175731..176021 1 NC_013960.1 PFAM: chaperonin Cpn10; KEGG: noc:Noc_2922 co-chaperonin GroES; chaperonin Cpn10 176021 8915131 Nhal_0164 Nitrosococcus halophilus Nc4 chaperonin Cpn10 YP_003525763.1 175731 D 472759 CDS YP_003525764.1 292490325 8915132 176087..177736 1 NC_013960.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: noc:Noc_2921 chaperonin GroEL; chaperonin GroEL 177736 8915132 Nhal_0165 Nitrosococcus halophilus Nc4 chaperonin GroEL YP_003525764.1 176087 D 472759 CDS YP_003525765.1 292490326 8915133 complement(177969..178373) 1 NC_013960.1 KEGG: noc:Noc_0203 Cu(I)-responsive transcriptional regulator; TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: transcription regulator MerR DNA binding; MerR family transcriptional regulator; SMART: MerR family transcriptional regulator; Cu(I)-responsive transcriptional regulator 178373 8915133 Nhal_0166 Nitrosococcus halophilus Nc4 Cu(I)-responsive transcriptional regulator YP_003525765.1 177969 R 472759 CDS YP_003525766.1 292490327 8915134 complement(178392..178601) 1 NC_013960.1 PFAM: Heavy metal transport/detoxification protein; KEGG: noc:Noc_0204 heavy metal transport/detoxification protein; Heavy metal transport/detoxification protein 178601 8915134 Nhal_0167 Nitrosococcus halophilus Nc4 Heavy metal transport/detoxification protein YP_003525766.1 178392 R 472759 CDS YP_003525767.1 292490328 8915135 complement(178648..181107) 1 NC_013960.1 TIGRFAM: ATPase P; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: noc:Noc_0205 ATPase P; ATPase P 181107 8915135 Nhal_0168 Nitrosococcus halophilus Nc4 ATPase P YP_003525767.1 178648 R 472759 CDS YP_003525768.1 292490329 8915138 183905..184153 1 NC_013960.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: dol:Dole_2342 CopG/DNA-binding domain-containing protein; CopG domain-containing protein DNA-binding domain-containing protein 184153 8915138 Nhal_0171 Nitrosococcus halophilus Nc4 CopG domain-containing protein DNA-binding domain-containing protein YP_003525768.1 183905 D 472759 CDS YP_003525769.1 292490330 8915139 184153..184542 1 NC_013960.1 PFAM: PilT protein domain protein; KEGG: cbg:CbuG_0773 PIN domain protein; PilT protein domain-containing protein 184542 8915139 Nhal_0172 Nitrosococcus halophilus Nc4 PilT protein domain-containing protein YP_003525769.1 184153 D 472759 CDS YP_003525770.1 292490331 8915140 184713..187619 1 NC_013960.1 PFAM: glutamate-ammonia ligase adenylyltransferase; GlnD PII-uridylyltransferase; KEGG: noc:Noc_0135 glutamate-ammonia-ligase adenylyltransferase; (glutamate--ammonia-ligase) adenylyltransferase 187619 8915140 Nhal_0173 Nitrosococcus halophilus Nc4 (glutamate--ammonia-ligase) adenylyltransferase YP_003525770.1 184713 D 472759 CDS YP_003525771.1 292490332 8915141 187665..188594 1 NC_013960.1 TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; KEGG: noc:Noc_0136 branched-chain amino acid aminotransferase; branched-chain amino acid aminotransferase 188594 8915141 Nhal_0174 Nitrosococcus halophilus Nc4 branched-chain amino acid aminotransferase YP_003525771.1 187665 D 472759 CDS YP_003525772.1 292490333 8915142 188626..189372 1 NC_013960.1 PFAM: protein of unknown function DUF28; KEGG: noc:Noc_0137 hypothetical protein; hypothetical protein 189372 8915142 Nhal_0175 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525772.1 188626 D 472759 CDS YP_003525773.1 292490334 8915143 189474..189998 1 NC_013960.1 KEGG: noc:Noc_0138 crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; crossover junction endodeoxyribonuclease RuvC 189998 8915143 Nhal_0176 Nitrosococcus halophilus Nc4 crossover junction endodeoxyribonuclease RuvC YP_003525773.1 189474 D 472759 CDS YP_003525774.1 292490335 8915144 189995..190594 1 NC_013960.1 KEGG: noc:Noc_0139 DNA recombination protein, RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein; SMART: Helix-hairpin-helix DNA-binding class 1; Holliday junction DNA helicase RuvA 190594 8915144 Nhal_0177 Nitrosococcus halophilus Nc4 Holliday junction DNA helicase RuvA YP_003525774.1 189995 D 472759 CDS YP_003525775.1 292490336 8915145 190591..191637 1 NC_013960.1 KEGG: noc:Noc_0140 Holliday junction DNA helicase B; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: ATPase AAA central domain protein; Holliday junction DNA helicase RuvB domain; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; Holliday junction DNA helicase RuvB 191637 8915145 Nhal_0178 Nitrosococcus halophilus Nc4 Holliday junction DNA helicase RuvB YP_003525775.1 190591 D 472759 CDS YP_003525776.1 292490337 8915146 191630..192037 1 NC_013960.1 TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: noc:Noc_0141 4-hydroxybenzoyl-CoA thioesterase; tol-pal system-associated acyl-CoA thioesterase 192037 8915146 Nhal_0179 Nitrosococcus halophilus Nc4 tol-pal system-associated acyl-CoA thioesterase YP_003525776.1 191630 D 472759 CDS YP_003525777.1 292490338 8915147 192027..192704 1 NC_013960.1 TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: noc:Noc_0142 MotA/TolQ/ExbB proton channel; protein TolQ 192704 8915147 Nhal_0180 Nitrosococcus halophilus Nc4 protein TolQ YP_003525777.1 192027 D 472759 CDS YP_003525778.1 292490339 8915148 192714..193160 1 NC_013960.1 TIGRFAM: protein TolR; PFAM: biopolymertransporter ExbD/TolR; KEGG: noc:Noc_0143 biopolymer transporter ExbD/TolR; protein TolR 193160 8915148 Nhal_0181 Nitrosococcus halophilus Nc4 protein TolR YP_003525778.1 192714 D 472759 CDS YP_003525779.1 292490340 8915149 193169..194059 1 NC_013960.1 TIGRFAM: protein TolA; TonB family protein; PFAM: Tol-Pal system TolA; KEGG: noc:Noc_0144 TonB-like; protein TolA 194059 8915149 Nhal_0182 Nitrosococcus halophilus Nc4 protein TolA YP_003525779.1 193169 D 472759 CDS YP_003525780.1 292490341 8915150 194060..195352 1 NC_013960.1 TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: TolB domain protein; hypothetical protein; KEGG: noc:Noc_0145 hypothetical protein; Tol-Pal system beta propeller repeat-containing protein TolB 195352 8915150 Nhal_0183 Nitrosococcus halophilus Nc4 Tol-Pal system beta propeller repeat-containing protein TolB YP_003525780.1 194060 D 472759 CDS YP_003525781.1 292490342 8915151 195387..195962 1 NC_013960.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: noc:Noc_0146 OmpA/MotB; peptidoglycan-associated lipoprotein 195962 8915151 Nhal_0184 Nitrosococcus halophilus Nc4 peptidoglycan-associated lipoprotein YP_003525781.1 195387 D 472759 CDS YP_003525782.1 292490343 8915152 195965..196729 1 NC_013960.1 KEGG: noc:Noc_0147 hypothetical protein; TIGRFAM: tol-pal system protein YbgF; PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; tol-pal system protein YbgF 196729 8915152 Nhal_0185 Nitrosococcus halophilus Nc4 tol-pal system protein YbgF YP_003525782.1 195965 D 472759 CDS YP_003525783.1 292490344 8915153 196775..197416 1 NC_013960.1 PFAM: radical SAM protein; KEGG: noc:Noc_0148 radical SAM domain-containing protein; radical SAM protein 197416 8915153 Nhal_0186 Nitrosococcus halophilus Nc4 radical SAM protein YP_003525783.1 196775 D 472759 CDS YP_003525784.1 292490345 8915154 197413..198087 1 NC_013960.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: noc:Noc_0149 ExsB; exsB protein 198087 8915154 Nhal_0187 Nitrosococcus halophilus Nc4 exsB protein YP_003525784.1 197413 D 472759 CDS YP_003525785.1 292490346 8915157 198643..199659 1 NC_013960.1 PFAM: peptidase M28; peptidase M20; KEGG: gur:Gura_1976 peptidase M28; peptidase M28 199659 8915157 Nhal_0189 Nitrosococcus halophilus Nc4 peptidase M28 YP_003525785.1 198643 D 472759 CDS YP_003525786.1 292490347 8915160 201057..201983 1 NC_013960.1 PFAM: peptidase S15; KEGG: mxa:MXAN_2361 hypothetical protein; peptidase S15 201983 8915160 Nhal_0192 Nitrosococcus halophilus Nc4 peptidase S15 YP_003525786.1 201057 D 472759 CDS YP_003525787.1 292490348 8915161 complement(202114..203973) 1 NC_013960.1 PFAM: CHRD domain containing protein; SMART: CHRD domain containing protein; KEGG: si:ch211-136a13.1; CHRD domain-containing protein 203973 8915161 Nhal_0193 Nitrosococcus halophilus Nc4 CHRD domain-containing protein YP_003525787.1 202114 R 472759 CDS YP_003525788.1 292490349 8915162 complement(204124..204618) 1 NC_013960.1 PFAM: outer membrane lipoprotein Slp; KEGG: tgr:Tgr7_0668 outer membrane lipoprotein Slp; outer membrane lipoprotein Slp 204618 8915162 Nhal_0194 Nitrosococcus halophilus Nc4 outer membrane lipoprotein Slp YP_003525788.1 204124 R 472759 CDS YP_003525789.1 292490350 8915163 complement(204640..205203) 1 NC_013960.1 TIGRFAM: outer membrane lipoprotein, Slp family; PFAM: outer membrane lipoprotein Slp; KEGG: tgr:Tgr7_0667 outer membrane lipoprotein, Slp family; Slp family outer membrane lipoprotein 205203 8915163 Nhal_0195 Nitrosococcus halophilus Nc4 Slp family outer membrane lipoprotein YP_003525789.1 204640 R 472759 CDS YP_003525790.1 292490351 8915164 complement(205337..205600) 1 NC_013960.1 KEGG: noc:Noc_3005 hypothetical protein; hypothetical protein 205600 8915164 Nhal_0196 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525790.1 205337 R 472759 CDS YP_003525791.1 292490352 8915165 complement(205597..206253) 1 NC_013960.1 TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF165; KEGG: xau:Xaut_4165 hypothetical protein; hypothetical protein 206253 8915165 Nhal_0197 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525791.1 205597 R 472759 CDS YP_003525792.1 292490353 8915166 206447..206794 1 NC_013960.1 PFAM: Calcium-binding EF-hand-containing protein; SMART: Calcium-binding EF-hand-containing protein; KEGG: CLSPN; claspin homolog (Xenopus laevis); calcium-binding EF-hand protein-containing protein 206794 8915166 Nhal_0198 Nitrosococcus halophilus Nc4 calcium-binding EF-hand protein-containing protein YP_003525792.1 206447 D 472759 CDS YP_003525793.1 292490354 8915168 209011..209124 1 NC_013960.1 hypothetical protein 209124 8915168 Nhal_0200 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525793.1 209011 D 472759 CDS YP_003525794.1 292490355 8915169 complement(209420..211024) 1 NC_013960.1 KEGG: net:Neut_0141 hypothetical protein; hypothetical protein 211024 8915169 Nhal_0201 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525794.1 209420 R 472759 CDS YP_003525795.1 292490356 8915171 complement(213344..213646) 1 NC_013960.1 KEGG: noc:Noc_0571 XRE family transcriptional regulator; TIGRFAM: addiction module antidote protein, HigA family; PFAM: hypothetical protein; SMART: hypothetical protein; HigA family addiction module antidote protein 213646 8915171 Nhal_0203 Nitrosococcus halophilus Nc4 HigA family addiction module antidote protein YP_003525795.1 213344 R 472759 CDS YP_003525796.1 292490357 8915172 complement(213656..213934) 1 NC_013960.1 PFAM: plasmid maintenance system killer; KEGG: noc:Noc_0570 plasmid maintenance system killer; plasmid maintenance system killer 213934 8915172 Nhal_0204 Nitrosococcus halophilus Nc4 plasmid maintenance system killer YP_003525796.1 213656 R 472759 CDS YP_003525797.1 292490358 8915174 complement(214382..215257) 1 NC_013960.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: sfu:Sfum_3983 tetratricopeptide TPR_2 repeat protein; hypothetical protein 215257 8915174 Nhal_0206 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525797.1 214382 R 472759 CDS YP_003525798.1 292490359 8915175 complement(215591..216466) 1 NC_013960.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: noc:Noc_0363 oxidoreductase FAD/NAD(P)-binding; oxidoreductase FAD/NAD(P)-binding domain-containing protein 216466 8915175 Nhal_0207 Nitrosococcus halophilus Nc4 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_003525798.1 215591 R 472759 CDS YP_003525799.1 292490360 8915176 complement(216463..217752) 1 NC_013960.1 TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; KEGG: noc:Noc_0364 dihydroorotase multifunctional complex type; dihydroorotase 217752 8915176 Nhal_0208 Nitrosococcus halophilus Nc4 dihydroorotase YP_003525799.1 216463 R 472759 CDS YP_003525800.1 292490361 8915177 complement(217752..218726) 1 NC_013960.1 KEGG: noc:Noc_0365 aspartate carbamoyltransferase catalytic subunit; TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate carbamoyltransferase 218726 8915177 Nhal_0209 Nitrosococcus halophilus Nc4 aspartate carbamoyltransferase YP_003525800.1 217752 R 472759 CDS YP_003525801.1 292490362 8915178 complement(218723..219256) 1 NC_013960.1 PFAM: phosphoribosyltransferase; KEGG: noc:Noc_0366 uracil phosphoribosyltransferase; uracil phosphoribosyltransferase 219256 8915178 Nhal_0210 Nitrosococcus halophilus Nc4 uracil phosphoribosyltransferase YP_003525801.1 218723 R 472759 CDS YP_003525802.1 292490363 8915179 complement(219300..219743) 1 NC_013960.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: noc:Noc_0367 Holliday junction resolvase YqgF; Holliday junction resolvase YqgF 219743 8915179 Nhal_0211 Nitrosococcus halophilus Nc4 Holliday junction resolvase YqgF YP_003525802.1 219300 R 472759 CDS YP_003525803.1 292490364 8915180 complement(219740..220303) 1 NC_013960.1 PFAM: protein of unknown function DUF179; KEGG: noc:Noc_0368 hypothetical protein; hypothetical protein 220303 8915180 Nhal_0212 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525803.1 219740 R 472759 CDS YP_003525804.1 292490365 8915181 complement(220337..220600) 1 NC_013960.1 KEGG: noc:Noc_3005 hypothetical protein; hypothetical protein 220600 8915181 Nhal_0213 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525804.1 220337 R 472759 CDS YP_003525805.1 292490366 8915182 complement(220597..221508) 1 NC_013960.1 TIGRFAM: TonB family protein; KEGG: noc:Noc_0369 TonB-like protein; TonB family protein 221508 8915182 Nhal_0214 Nitrosococcus halophilus Nc4 TonB family protein YP_003525805.1 220597 R 472759 CDS YP_003525806.1 292490367 8915183 complement(221517..222479) 1 NC_013960.1 KEGG: tgr:Tgr7_2905 glutathione synthetase; TIGRFAM: glutathione synthetase; PFAM: glutathione synthetase ATP-binding; RimK domain protein ATP-grasp; glutathione synthetase domain protein; glutathione synthetase 222479 8915183 Nhal_0215 Nitrosococcus halophilus Nc4 glutathione synthetase YP_003525806.1 221517 R 472759 CDS YP_003525807.1 292490368 8915184 222744..224477 1 NC_013960.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: noc:Noc_0370 outer membrane protein; surface antigen (D15) 224477 8915184 Nhal_0216 Nitrosococcus halophilus Nc4 surface antigen (D15) YP_003525807.1 222744 D 472759 CDS YP_003525808.1 292490369 8915185 224474..228238 1 NC_013960.1 PFAM: protein of unknown function DUF490; KEGG: noc:Noc_0371 hypothetical protein; hypothetical protein 228238 8915185 Nhal_0217 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525808.1 224474 D 472759 CDS YP_003525809.1 292490370 8915186 228363..229307 1 NC_013960.1 KEGG: noc:Noc_0372 glycyl-tRNA synthetase subunit alpha; TIGRFAM: glycyl-tRNA synthetase subunit alpha; PFAM: glycyl-tRNA synthetase subunit alpha; glycyl-tRNA synthetase subunit alpha 229307 8915186 Nhal_0218 Nitrosococcus halophilus Nc4 glycyl-tRNA synthetase subunit alpha YP_003525809.1 228363 D 472759 CDS YP_003525810.1 292490371 8915187 229300..231375 1 NC_013960.1 KEGG: noc:Noc_0373 glycine--tRNA ligase; TIGRFAM: glycyl-tRNA synthetase subunit beta; glycyl-tRNA synthetase subunit beta 231375 8915187 Nhal_0219 Nitrosococcus halophilus Nc4 glycyl-tRNA synthetase subunit beta YP_003525810.1 229300 D 472759 CDS YP_003525811.1 292490372 8915188 231435..231974 1 NC_013960.1 TIGRFAM: histidinol-phosphate phosphatase; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: polynucleotide kinase 3 phosphatase central region; KEGG: noc:Noc_0374 histidinol-phosphate phosphatase; histidinol-phosphate phosphatase 231974 8915188 Nhal_0220 Nitrosococcus halophilus Nc4 histidinol-phosphate phosphatase YP_003525811.1 231435 D 472759 CDS YP_003525812.1 292490373 8915189 231967..232881 1 NC_013960.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: noc:Noc_0375 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 232881 8915189 Nhal_0221 Nitrosococcus halophilus Nc4 phospholipid/glycerol acyltransferase YP_003525812.1 231967 D 472759 CDS YP_003525813.1 292490374 8915190 232841..234931 1 NC_013960.1 KEGG: noc:Noc_0376 multisensor diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; response regulator receiver; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; diguanylate cyclase 234931 8915190 Nhal_0222 Nitrosococcus halophilus Nc4 diguanylate cyclase YP_003525813.1 232841 D 472759 CDS YP_003525814.1 292490375 8915192 235314..235502 1 NC_013960.1 KEGG: noc:Noc_3005 hypothetical protein; hypothetical protein 235502 8915192 Nhal_0224 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525814.1 235314 D 472759 CDS YP_003525815.1 292490376 8915193 235870..236772 1 NC_013960.1 PFAM: peptidase M48 Ste24p; peptidase M56 BlaR1; KEGG: dde:Dde_1051 HtpX-2 peptidase; peptidase M48 Ste24p 236772 8915193 Nhal_0225 Nitrosococcus halophilus Nc4 peptidase M48 Ste24p YP_003525815.1 235870 D 472759 CDS YP_003525816.1 292490377 8915194 236769..237335 1 NC_013960.1 hypothetical protein 237335 8915194 Nhal_0226 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525816.1 236769 D 472759 CDS YP_003525817.1 292490378 8915195 complement(237354..237632) 1 NC_013960.1 hypothetical protein 237632 8915195 Nhal_0227 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525817.1 237354 R 472759 CDS YP_003525818.1 292490379 8915196 complement(237663..238364) 1 NC_013960.1 PFAM: PspA/IM30 family protein; KEGG: afr:AFE_2017 PspA/IM30 family; PspA/IM30 family protein 238364 8915196 Nhal_0228 Nitrosococcus halophilus Nc4 PspA/IM30 family protein YP_003525818.1 237663 R 472759 CDS YP_003525819.1 292490380 8915197 complement(238454..240034) 1 NC_013960.1 PFAM: aminoglycoside phosphotransferase; KEGG: noc:Noc_0379 hypothetical protein; aminoglycoside phosphotransferase 240034 8915197 Nhal_0229 Nitrosococcus halophilus Nc4 aminoglycoside phosphotransferase YP_003525819.1 238454 R 472759 CDS YP_003525820.1 292490381 8915198 complement(240093..241304) 1 NC_013960.1 PFAM: polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: noc:Noc_0389 polynucleotide adenylyltransferase; polynucleotide adenylyltransferase region 241304 8915198 Nhal_0230 Nitrosococcus halophilus Nc4 polynucleotide adenylyltransferase region YP_003525820.1 240093 R 472759 CDS YP_003525821.1 292490382 8915199 complement(241313..242296) 1 NC_013960.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: noc:Noc_0390 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 242296 8915199 Nhal_0231 Nitrosococcus halophilus Nc4 NAD-dependent epimerase/dehydratase YP_003525821.1 241313 R 472759 CDS YP_003525822.1 292490383 8915200 242489..243853 1 NC_013960.1 PFAM: aldehyde dehydrogenase; KEGG: noc:Noc_0391 aldehyde dehydrogenase; aldehyde dehydrogenase 243853 8915200 Nhal_0232 Nitrosococcus halophilus Nc4 aldehyde dehydrogenase YP_003525822.1 242489 D 472759 CDS YP_003525823.1 292490384 8915201 complement(243884..245188) 1 NC_013960.1 hypothetical protein 245188 8915201 Nhal_0233 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525823.1 243884 R 472759 CDS YP_003525824.1 292490385 8915202 245320..246360 1 NC_013960.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: noc:Noc_0392 response regulator receiver; response regulator receiver 246360 8915202 Nhal_0234 Nitrosococcus halophilus Nc4 response regulator receiver YP_003525824.1 245320 D 472759 CDS YP_003525825.1 292490386 8915203 246851..247702 1 NC_013960.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: noc:Noc_0393 modification methylase HemK; HemK family modification methylase 247702 8915203 Nhal_0235 Nitrosococcus halophilus Nc4 HemK family modification methylase YP_003525825.1 246851 D 472759 CDS YP_003525826.1 292490387 8915204 247766..248767 1 NC_013960.1 PFAM: protein of unknown function DUF523; protein of unknown function DUF1722; KEGG: noc:Noc_0394 hypothetical protein; hypothetical protein 248767 8915204 Nhal_0236 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525826.1 247766 D 472759 CDS YP_003525827.1 292490388 8915205 249201..250397 1 NC_013960.1 PFAM: transposase IS4 family protein; KEGG: pca:Pcar_0986 transposase; transposase IS4 family protein 250397 8915205 Nhal_0237 Nitrosococcus halophilus Nc4 transposase IS4 family protein YP_003525827.1 249201 D 472759 CDS YP_003525828.1 292490389 8915206 250541..251083 1 NC_013960.1 hypothetical protein 251083 8915206 Nhal_0238 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525828.1 250541 D 472759 CDS YP_003525829.1 292490390 8915207 251173..252390 1 NC_013960.1 PFAM: RES domain protein; KEGG: ppg:PputGB1_4795 RES domain-containing protein; RES domain-containing protein 252390 8915207 Nhal_0239 Nitrosococcus halophilus Nc4 RES domain-containing protein YP_003525829.1 251173 D 472759 CDS YP_003525830.1 292490391 8915208 252499..253041 1 NC_013960.1 PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: ccs:CCNA_02125 polar development protein PodJ; Sel1 domain-containing protein repeat-containing protein 253041 8915208 Nhal_0240 Nitrosococcus halophilus Nc4 Sel1 domain-containing protein repeat-containing protein YP_003525830.1 252499 D 472759 CDS YP_003525831.1 292490392 8915209 253328..253657 1 NC_013960.1 KEGG: noc:Noc_0284 hypothetical protein; hypothetical protein 253657 8915209 Nhal_0241 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525831.1 253328 D 472759 CDS YP_003525832.1 292490393 8915210 253670..253984 1 NC_013960.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: noc:Noc_0283 XRE family transcriptional regulator; hypothetical protein 253984 8915210 Nhal_0242 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525832.1 253670 D 472759 CDS YP_003525833.1 292490394 8915211 254223..254480 1 NC_013960.1 KEGG: rfe:RF_0889 hypothetical protein; hypothetical protein 254480 8915211 Nhal_0243 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525833.1 254223 D 472759 CDS YP_003525834.1 292490395 8915212 254487..254717 1 NC_013960.1 KEGG: amc:MADE_00619 hypothetical protein; hypothetical protein 254717 8915212 Nhal_0244 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525834.1 254487 D 472759 CDS YP_003525835.1 292490396 8915213 complement(254895..255932) 1 NC_013960.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: tgr:Tgr7_2573 AraC family transcriptional regulator with amidase-like domain; AraC family transcriptional regulator 255932 8915213 Nhal_0245 Nitrosococcus halophilus Nc4 AraC family transcriptional regulator YP_003525835.1 254895 R 472759 CDS YP_003525836.1 292490397 8915214 256366..256902 1 NC_013960.1 KEGG: nmu:Nmul_A1359 hypothetical protein; hypothetical protein 256902 8915214 Nhal_0246 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525836.1 256366 D 472759 CDS YP_003525837.1 292490398 8915216 complement(258328..259176) 1 NC_013960.1 KEGG: noc:Noc_3067 transfer origin protein, TraL; transfer origin protein, TraL 259176 8915216 Nhal_0248 Nitrosococcus halophilus Nc4 transfer origin protein, TraL YP_003525837.1 258328 R 472759 CDS YP_003525838.1 292490399 8915217 complement(259188..259553) 1 NC_013960.1 KEGG: noc:Noc_3066 hypothetical protein; hypothetical protein 259553 8915217 Nhal_0249 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525838.1 259188 R 472759 CDS YP_003525839.1 292490400 8915219 260436..261278 1 NC_013960.1 PFAM: protein of unknown function DUF1568; KEGG: tbd:Tbd_1967 hypothetical protein; hypothetical protein 261278 8915219 Nhal_0251 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525839.1 260436 D 472759 CDS YP_003525840.1 292490401 8915220 complement(261342..262775) 1 NC_013960.1 PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: tgr:Tgr7_1394 deoxyribodipyrimidine photo-lyase; deoxyribodipyrimidine photo-lyase 262775 8915220 Nhal_0252 Nitrosococcus halophilus Nc4 deoxyribodipyrimidine photo-lyase YP_003525840.1 261342 R 472759 CDS YP_003525841.1 292490402 8915221 complement(262784..263530) 1 NC_013960.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: tgr:Tgr7_1395 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 263530 8915221 Nhal_0253 Nitrosococcus halophilus Nc4 short-chain dehydrogenase/reductase SDR YP_003525841.1 262784 R 472759 CDS YP_003525842.1 292490403 8915222 complement(263640..264401) 1 NC_013960.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; transposase IS891/IS1136/IS1341 family; KEGG: pin:Ping_3063 transposase, IS605 OrfB family protein; transposase, IS605 OrfB family 264401 8915222 Nhal_0254 Nitrosococcus halophilus Nc4 transposase, IS605 OrfB family YP_003525842.1 263640 R 472759 CDS YP_003525843.1 292490404 8915223 complement(264587..265531) 1 NC_013960.1 PFAM: MerR family transcriptional regulator; SMART: MerR family transcriptional regulator; KEGG: aeh:Mlg_2255 MerR family transcriptional regulator; MerR family transcriptional regulator 265531 8915223 Nhal_0255 Nitrosococcus halophilus Nc4 MerR family transcriptional regulator YP_003525843.1 264587 R 472759 CDS YP_003525844.1 292490405 8915224 265742..266515 1 NC_013960.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: noc:Noc_0362 adenylyltransferase; UBA/THIF-type NAD/FAD binding protein 266515 8915224 Nhal_0256 Nitrosococcus halophilus Nc4 UBA/THIF-type NAD/FAD binding protein YP_003525844.1 265742 D 472759 CDS YP_003525845.1 292490406 8915225 266512..266916 1 NC_013960.1 PFAM: Mov34/MPN/PAD-1 family protein; SMART: Mov34/MPN/PAD-1 family protein; KEGG: noc:Noc_0361 PAD1/JAB1 superfamily metal-dependent protease; Mov34/MPN/PAD-1 family protein 266916 8915225 Nhal_0257 Nitrosococcus halophilus Nc4 Mov34/MPN/PAD-1 family protein YP_003525845.1 266512 D 472759 CDS YP_003525846.1 292490407 8915226 266985..268322 1 NC_013960.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: tgr:Tgr7_2264 microcin-processing peptidase 1; peptidase U62 modulator of DNA gyrase 268322 8915226 Nhal_0258 Nitrosococcus halophilus Nc4 peptidase U62 modulator of DNA gyrase YP_003525846.1 266985 D 472759 CDS YP_003525847.1 292490408 8915227 268447..269202 1 NC_013960.1 KEGG: noc:Noc_0360 hypothetical protein; hypothetical protein 269202 8915227 Nhal_0259 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525847.1 268447 D 472759 CDS YP_003525848.1 292490409 8915228 269410..270132 1 NC_013960.1 PFAM: protein of unknown function DUF533; KEGG: noc:Noc_0359 hypothetical protein; hypothetical protein 270132 8915228 Nhal_0260 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525848.1 269410 D 472759 CDS YP_003525849.1 292490410 8915229 complement(270203..270709) 1 NC_013960.1 KEGG: pat:Patl_0448 2OG-Fe(II) oxygenase; Alkylated DNA repair protein-like protein 270709 8915229 Nhal_0261 Nitrosococcus halophilus Nc4 Alkylated DNA repair protein-like protein YP_003525849.1 270203 R 472759 CDS YP_003525850.1 292490411 8915230 complement(270754..271335) 1 NC_013960.1 KEGG: maq:Maqu_2987 hypothetical protein; hypothetical protein 271335 8915230 Nhal_0262 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525850.1 270754 R 472759 CDS YP_003525851.1 292490412 8915231 complement(271346..271444) 1 NC_013960.1 hypothetical protein 271444 8915231 Nhal_0263 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525851.1 271346 R 472759 CDS YP_003525852.1 292490413 8915232 271764..272210 1 NC_013960.1 hypothetical protein 272210 8915232 Nhal_0264 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525852.1 271764 D 472759 CDS YP_003525853.1 292490414 8915233 complement(272234..273952) 1 NC_013960.1 PFAM: chloride channel core; KEGG: noc:Noc_0358 Cl-channel, voltage gated; chloride channel core 273952 8915233 Nhal_0265 Nitrosococcus halophilus Nc4 chloride channel core YP_003525853.1 272234 R 472759 CDS YP_003525854.1 292490415 8915234 complement(274294..274509) 1 NC_013960.1 PFAM: protein of unknown function UPF0150; KEGG: noc:Noc_1108 hypothetical protein; hypothetical protein 274509 8915234 Nhal_0266 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525854.1 274294 R 472759 CDS YP_003525855.1 292490416 8915235 complement(275316..275651) 1 NC_013960.1 PFAM: PemK family protein; KEGG: cak:Caul_3898 toxin ChpA; PemK family protein 275651 8915235 Nhal_0267 Nitrosococcus halophilus Nc4 PemK family protein YP_003525855.1 275316 R 472759 CDS YP_003525856.1 292490417 8915236 complement(275656..275898) 1 NC_013960.1 PFAM: SpoVT/AbrB domain protein; KEGG: pnu:Pnuc_1108 MazE family transcriptional regulator; SpoVT/AbrB domain-containing protein 275898 8915236 Nhal_0268 Nitrosococcus halophilus Nc4 SpoVT/AbrB domain-containing protein YP_003525856.1 275656 R 472759 CDS YP_003525857.1 292490418 8915237 complement(276138..277076) 1 NC_013960.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: noc:Noc_2934 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; HemK family modification methylase 277076 8915237 Nhal_0269 Nitrosococcus halophilus Nc4 HemK family modification methylase YP_003525857.1 276138 R 472759 CDS YP_003525858.1 292490419 8915238 complement(277088..278497) 1 NC_013960.1 TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein; KEGG: noc:Noc_2935 isopropylmalate isomerase large subunit; 3-isopropylmalate dehydratase, large subunit 278497 8915238 Nhal_0270 Nitrosococcus halophilus Nc4 3-isopropylmalate dehydratase, large subunit YP_003525858.1 277088 R 472759 CDS YP_003525859.1 292490420 8915239 complement(278530..281796) 1 NC_013960.1 PFAM: acriflavin resistance protein; KEGG: noc:Noc_2936 acriflavin resistance protein; acriflavin resistance protein 281796 8915239 Nhal_0271 Nitrosococcus halophilus Nc4 acriflavin resistance protein YP_003525859.1 278530 R 472759 CDS YP_003525860.1 292490421 8915240 complement(281797..283047) 1 NC_013960.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: noc:Noc_2937 secretion protein HlyD; RND family efflux transporter MFP subunit 283047 8915240 Nhal_0272 Nitrosococcus halophilus Nc4 RND family efflux transporter MFP subunit YP_003525860.1 281797 R 472759 CDS YP_003525861.1 292490422 8915241 complement(283365..283568) 1 NC_013960.1 hypothetical protein 283568 8915241 Nhal_0273 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525861.1 283365 R 472759 CDS YP_003525862.1 292490423 8915242 complement(283622..284731) 1 NC_013960.1 KEGG: noc:Noc_2938 chorismate synthase; TIGRFAM: chorismate synthase; PFAM: chorismate synthase; chorismate synthase 284731 8915242 Nhal_0274 Nitrosococcus halophilus Nc4 chorismate synthase YP_003525862.1 283622 R 472759 CDS YP_003525863.1 292490424 8915244 285124..285435 1 NC_013960.1 hypothetical protein 285435 8915244 Nhal_0276 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525863.1 285124 D 472759 CDS YP_003525864.1 292490425 8915245 285459..285674 1 NC_013960.1 hypothetical protein 285674 8915245 Nhal_0277 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525864.1 285459 D 472759 CDS YP_003525865.1 292490426 8915246 285662..285874 1 NC_013960.1 hypothetical protein 285874 8915246 Nhal_0278 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525865.1 285662 D 472759 CDS YP_003525866.1 292490427 8915248 complement(286194..287051) 1 NC_013960.1 PFAM: CHRD domain containing protein; SMART: CHRD domain containing protein; KEGG: noc:Noc_0158 hypothetical protein; CHRD domain-containing protein 287051 8915248 Nhal_0280 Nitrosococcus halophilus Nc4 CHRD domain-containing protein YP_003525866.1 286194 R 472759 CDS YP_003525867.1 292490428 8915249 complement(287208..287825) 1 NC_013960.1 KEGG: noc:Noc_0158 hypothetical protein; hypothetical protein 287825 8915249 Nhal_0281 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525867.1 287208 R 472759 CDS YP_003525868.1 292490429 8915250 complement(288105..288665) 1 NC_013960.1 KEGG: tmz:Tmz1t_0280 hypothetical protein; hypothetical protein 288665 8915250 Nhal_0282 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525868.1 288105 R 472759 CDS YP_003525869.1 292490430 8915251 complement(288739..289602) 1 NC_013960.1 hypothetical protein 289602 8915251 Nhal_0283 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525869.1 288739 R 472759 CDS YP_003525870.1 292490431 8915252 289836..291065 1 NC_013960.1 KEGG: abo:ABO_1043 hypothetical protein; hypothetical protein 291065 8915252 Nhal_0284 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525870.1 289836 D 472759 CDS YP_003525871.1 292490432 8915253 291059..292192 1 NC_013960.1 PFAM: glycosyl transferase group 1; KEGG: abo:ABO_1044 hypothetical protein; group 1 glycosyl transferase 292192 8915253 Nhal_0285 Nitrosococcus halophilus Nc4 group 1 glycosyl transferase YP_003525871.1 291059 D 472759 CDS YP_003525872.1 292490433 8915254 292192..292896 1 NC_013960.1 KEGG: abo:ABO_1045 hypothetical protein; hypothetical protein 292896 8915254 Nhal_0286 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525872.1 292192 D 472759 CDS YP_003525873.1 292490434 8915255 complement(293023..295251) 1 NC_013960.1 KEGG: sat:SYN_02894 fibronectin type III domain-containing protein; hypothetical protein 295251 8915255 Nhal_0287 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525873.1 293023 R 472759 CDS YP_003525874.1 292490435 8915256 complement(295336..296172) 1 NC_013960.1 hypothetical protein 296172 8915256 Nhal_0288 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525874.1 295336 R 472759 CDS YP_003525875.1 292490436 8915257 complement(296172..296312) 1 NC_013960.1 hypothetical protein 296312 8915257 Nhal_0289 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525875.1 296172 R 472759 CDS YP_003525876.1 292490437 8915258 complement(296384..296638) 1 NC_013960.1 hypothetical protein 296638 8915258 Nhal_0290 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525876.1 296384 R 472759 CDS YP_003525877.1 292490438 8915259 complement(296638..297039) 1 NC_013960.1 hypothetical protein 297039 8915259 Nhal_0291 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525877.1 296638 R 472759 CDS YP_003525878.1 292490439 8915260 complement(297047..297832) 1 NC_013960.1 hypothetical protein 297832 8915260 Nhal_0292 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525878.1 297047 R 472759 CDS YP_003525879.1 292490440 8915261 complement(297877..298656) 1 NC_013960.1 hypothetical protein 298656 8915261 Nhal_0293 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525879.1 297877 R 472759 CDS YP_003525880.1 292490441 8915262 complement(298640..299776) 1 NC_013960.1 hypothetical protein 299776 8915262 Nhal_0294 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525880.1 298640 R 472759 CDS YP_003525881.1 292490442 8915263 complement(299909..300589) 1 NC_013960.1 hypothetical protein 300589 8915263 Nhal_0295 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525881.1 299909 R 472759 CDS YP_003525882.1 292490443 8915264 complement(300629..301657) 1 NC_013960.1 KEGG: azc:AZC_4326 penicillin-insensitive murein endopeptidase; hypothetical protein 301657 8915264 Nhal_0296 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525882.1 300629 R 472759 CDS YP_003525883.1 292490444 8915265 302159..302536 1 NC_013960.1 PFAM: ArsR family transcriptional regulator; SMART: ArsR family transcriptional regulator; KEGG: tgr:Tgr7_1925 ArsR family transcriptional regulator; ArsR family transcriptional regulator 302536 8915265 Nhal_0297 Nitrosococcus halophilus Nc4 ArsR family transcriptional regulator YP_003525883.1 302159 D 472759 CDS YP_003525884.1 292490445 8915266 302628..303134 1 NC_013960.1 PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; KEGG: mes:Meso_4199 protein tyrosine phosphatase; protein-tyrosine phosphatase, low molecular weight 303134 8915266 Nhal_0298 Nitrosococcus halophilus Nc4 protein-tyrosine phosphatase, low molecular weight YP_003525884.1 302628 D 472759 CDS YP_003525885.1 292490446 8915267 303378..303947 1 NC_013960.1 KEGG: transcriptional coactivator; hypothetical protein 303947 8915267 Nhal_0299 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525885.1 303378 D 472759 CDS YP_003525886.1 292490447 8915268 complement(303962..304579) 1 NC_013960.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: noc:Noc_0157 HylII; hemolysin III family channel protein 304579 8915268 Nhal_0300 Nitrosococcus halophilus Nc4 hemolysin III family channel protein YP_003525886.1 303962 R 472759 CDS YP_003525887.1 292490448 8915269 complement(304693..305871) 1 NC_013960.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: noc:Noc_0156 hypothetical protein; hypothetical protein 305871 8915269 Nhal_0301 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525887.1 304693 R 472759 CDS YP_003525888.1 292490449 8915270 complement(306052..306549) 1 NC_013960.1 KEGG: noc:Noc_0155 hypothetical protein; hypothetical protein 306549 8915270 Nhal_0302 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525888.1 306052 R 472759 CDS YP_003525889.1 292490450 8915271 complement(306605..307090) 1 NC_013960.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vei:Veis_4651 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 307090 8915271 Nhal_0303 Nitrosococcus halophilus Nc4 glyoxalase/bleomycin resistance protein/dioxygenase YP_003525889.1 306605 R 472759 CDS YP_003525890.1 292490451 8915272 307574..308716 1 NC_013960.1 PFAM: cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase type 11; methyltransferase type 12; KEGG: aav:Aave_3565 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 308716 8915272 Nhal_0304 Nitrosococcus halophilus Nc4 cyclopropane-fatty-acyl-phospholipid synthase YP_003525890.1 307574 D 472759 CDS YP_003525891.1 292490452 8915273 308739..309146 1 NC_013960.1 KEGG: bur:Bcep18194_C6579 hypothetical protein; hypothetical protein 309146 8915273 Nhal_0305 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525891.1 308739 D 472759 CDS YP_003525892.1 292490453 8915274 309149..309307 1 NC_013960.1 hypothetical protein 309307 8915274 Nhal_0306 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525892.1 309149 D 472759 CDS YP_003525893.1 292490454 8915276 310074..311102 1 NC_013960.1 PFAM: fatty acid desaturase; KEGG: sml:Smlt2374 fatty acid desaturase (membrane); stearoyl-CoA 9-desaturase 311102 8915276 Nhal_0308 Nitrosococcus halophilus Nc4 stearoyl-CoA 9-desaturase YP_003525893.1 310074 D 472759 CDS YP_003525894.1 292490455 8915277 311153..312349 1 NC_013960.1 KEGG: gsu:GSU2327 hypothetical protein; hypothetical protein 312349 8915277 Nhal_0309 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525894.1 311153 D 472759 CDS YP_003525895.1 292490456 8915278 312406..312996 1 NC_013960.1 PFAM: protein of unknown function DUF1365; KEGG: ppd:Ppro_0128 hypothetical protein; hypothetical protein 312996 8915278 Nhal_0310 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525895.1 312406 D 472759 CDS YP_003525896.1 292490457 8915279 complement(join(313017..313457,313457..313735)) 1 NC_013960.1 hypothetical protein 313735 8915279 Nhal_0311 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525896.1 313017 R 472759 CDS YP_003525897.1 292490458 8915281 314007..315311 1 NC_013960.1 PFAM: cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase type 11; methyltransferase type 12; KEGG: ppd:Ppro_0127 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 315311 8915281 Nhal_0313 Nitrosococcus halophilus Nc4 cyclopropane-fatty-acyl-phospholipid synthase YP_003525897.1 314007 D 472759 CDS YP_003525898.1 292490459 8915282 complement(315691..316722) 1 NC_013960.1 PFAM: protein of unknown function DUF1568; KEGG: noc:Noc_1856 hypothetical protein; hypothetical protein 316722 8915282 Nhal_0314 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525898.1 315691 R 472759 CDS YP_003525899.1 292490460 8915283 complement(316790..317038) 1 NC_013960.1 KEGG: ppd:Ppro_0139 transposase mutator family protein; transposase mutator family protein 317038 8915283 Nhal_0315 Nitrosococcus halophilus Nc4 transposase mutator family protein YP_003525899.1 316790 R 472759 CDS YP_003525900.1 292490461 8915284 complement(317076..317480) 1 NC_013960.1 KEGG: vha:VIBHAR_02566 hypothetical protein; hypothetical protein 317480 8915284 Nhal_0316 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525900.1 317076 R 472759 CDS YP_003525901.1 292490462 8915285 complement(317914..318201) 1 NC_013960.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: ppd:Ppro_3843 addiction module antitoxin; RelE/StbE family addiction module toxin 318201 8915285 Nhal_0317 Nitrosococcus halophilus Nc4 RelE/StbE family addiction module toxin YP_003525901.1 317914 R 472759 CDS YP_003525902.1 292490463 8915286 complement(318198..318455) 1 NC_013960.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: mlo:msr2423 hypothetical protein; CopG domain-containing protein DNA-binding domain-containing protein 318455 8915286 Nhal_0318 Nitrosococcus halophilus Nc4 CopG domain-containing protein DNA-binding domain-containing protein YP_003525902.1 318198 R 472759 CDS YP_003525903.1 292490464 8915288 complement(318630..318950) 1 NC_013960.1 PFAM: PemK family protein; KEGG: noc:Noc_A0033 PemK-like protein; PemK family protein 318950 8915288 Nhal_0320 Nitrosococcus halophilus Nc4 PemK family protein YP_003525903.1 318630 R 472759 CDS YP_003525904.1 292490465 8915289 complement(318937..319170) 1 NC_013960.1 KEGG: noc:Noc_A0034 hypothetical protein; hypothetical protein 319170 8915289 Nhal_0321 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525904.1 318937 R 472759 CDS YP_003525905.1 292490466 8915290 complement(319233..320387) 1 NC_013960.1 PFAM: major facilitator superfamily MFS_1; nucleoside:H symporter; KEGG: noc:Noc_2803 MFS family nucleoside/H(+) symporter; major facilitator superfamily protein 320387 8915290 Nhal_0322 Nitrosococcus halophilus Nc4 major facilitator superfamily protein YP_003525905.1 319233 R 472759 CDS YP_003525906.1 292490467 8915291 320450..320752 1 NC_013960.1 hypothetical protein 320752 8915291 Nhal_0323 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525906.1 320450 D 472759 CDS YP_003525907.1 292490468 8915292 320706..321641 1 NC_013960.1 KEGG: noc:Noc_2802 malate dehydrogenase, NAD-dependent; TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: lactate/malate dehydrogenase; malate dehydrogenase, NAD-dependent 321641 8915292 Nhal_0324 Nitrosococcus halophilus Nc4 malate dehydrogenase, NAD-dependent YP_003525907.1 320706 D 472759 CDS YP_003525908.1 292490469 8915293 321868..322659 1 NC_013960.1 KEGG: tgr:Tgr7_2736 hemolysin; hemolysin 322659 8915293 Nhal_0325 Nitrosococcus halophilus Nc4 hemolysin YP_003525908.1 321868 D 472759 CDS YP_003525909.1 292490470 8915294 complement(322956..324314) 1 NC_013960.1 TIGRFAM: magnesium transporter; PFAM: MgtE intracellular region; CBS domain containing protein; MgtE integral membrane region; KEGG: noc:Noc_2801 divalent cation transporter; magnesium transporter 324314 8915294 Nhal_0326 Nitrosococcus halophilus Nc4 magnesium transporter YP_003525909.1 322956 R 472759 CDS YP_003525910.1 292490471 8915295 complement(324460..326208) 1 NC_013960.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; KEGG: noc:Noc_2800 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase 326208 8915295 Nhal_0327 Nitrosococcus halophilus Nc4 phosphoenolpyruvate-protein phosphotransferase YP_003525910.1 324460 R 472759 CDS YP_003525911.1 292490472 8915296 complement(326273..326542) 1 NC_013960.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: noc:Noc_2799 phosphoryl transfer system, HPr; phosphocarrier, HPr family 326542 8915296 Nhal_0328 Nitrosococcus halophilus Nc4 phosphocarrier, HPr family YP_003525911.1 326273 R 472759 CDS YP_003525912.1 292490473 8915297 complement(326529..326945) 1 NC_013960.1 PFAM: PTS system fructose subfamily IIA component; KEGG: noc:Noc_2798 PTS system fructose subfamily IIA component; PTS system fructose subfamily IIA component 326945 8915297 Nhal_0329 Nitrosococcus halophilus Nc4 PTS system fructose subfamily IIA component YP_003525912.1 326529 R 472759 CDS YP_003525913.1 292490474 8915298 complement(326942..327790) 1 NC_013960.1 PFAM: conserved hypothetical protein; KEGG: noc:Noc_2797 hypothetical protein; hypothetical protein 327790 8915298 Nhal_0330 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525913.1 326942 R 472759 CDS YP_003525914.1 292490475 8915299 complement(327838..328386) 1 NC_013960.1 PFAM: HPr serine kinase domain protein; KEGG: noc:Noc_2796 HPr kinase/phosphorylase; HPr serine kinase domain-containing protein 328386 8915299 Nhal_0331 Nitrosococcus halophilus Nc4 HPr serine kinase domain-containing protein YP_003525914.1 327838 R 472759 CDS YP_003525915.1 292490476 8915300 complement(328402..328884) 1 NC_013960.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: noc:Noc_2795 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; PTS IIA-like nitrogen-regulatory protein PtsN 328884 8915300 Nhal_0332 Nitrosococcus halophilus Nc4 PTS IIA-like nitrogen-regulatory protein PtsN YP_003525915.1 328402 R 472759 CDS YP_003525916.1 292490477 8915301 complement(328898..329224) 1 NC_013960.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: noc:Noc_2794 sigma 54 modulation protein/ribosomal protein S30EA; ribosomal subunit interface protein 329224 8915301 Nhal_0333 Nitrosococcus halophilus Nc4 ribosomal subunit interface protein YP_003525916.1 328898 R 472759 CDS YP_003525917.1 292490478 8915302 complement(329251..330699) 1 NC_013960.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor; KEGG: noc:Noc_2793 sigma-54, RpoN; RNA polymerase sigma-54 factor, RpoN 330699 8915302 Nhal_0334 Nitrosococcus halophilus Nc4 RNA polymerase sigma-54 factor, RpoN YP_003525917.1 329251 R 472759 CDS YP_003525918.1 292490479 8915303 complement(330767..331492) 1 NC_013960.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_2792 ABC transporter ATPase; ABC transporter 331492 8915303 Nhal_0335 Nitrosococcus halophilus Nc4 ABC transporter YP_003525918.1 330767 R 472759 CDS YP_003525919.1 292490480 8915304 complement(331506..332333) 1 NC_013960.1 TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; SH3 type 3 domain protein; KEGG: noc:Noc_2791 OstA-like protein; lipopolysaccharide transport periplasmic protein LptA 332333 8915304 Nhal_0336 Nitrosococcus halophilus Nc4 lipopolysaccharide transport periplasmic protein LptA YP_003525919.1 331506 R 472759 CDS YP_003525920.1 292490481 8915305 complement(332311..332754) 1 NC_013960.1 PFAM: protein of unknown function DUF1239; KEGG: noc:Noc_2790 hypothetical protein; hypothetical protein 332754 8915305 Nhal_0337 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525920.1 332311 R 472759 CDS YP_003525921.1 292490482 8915306 complement(332882..333403) 1 NC_013960.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: noc:Noc_2789 phosphatase KdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 333403 8915306 Nhal_0338 Nitrosococcus halophilus Nc4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_003525921.1 332882 R 472759 CDS YP_003525922.1 292490483 8915307 complement(333425..334441) 1 NC_013960.1 KEGG: noc:Noc_2788 sugar phosphate isomerase involved in capsule formation, KpsF/GutQ; TIGRFAM: KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; SMART: CBS domain containing protein; KpsF/GutQ family protein 334441 8915307 Nhal_0339 Nitrosococcus halophilus Nc4 KpsF/GutQ family protein YP_003525922.1 333425 R 472759 CDS YP_003525923.1 292490484 8915308 complement(334583..335365) 1 NC_013960.1 PFAM: VacJ family lipoprotein; KEGG: noc:Noc_2787 VacJ-like lipoprotein; VacJ family lipoprotein 335365 8915308 Nhal_0340 Nitrosococcus halophilus Nc4 VacJ family lipoprotein YP_003525923.1 334583 R 472759 CDS YP_003525924.1 292490485 8915309 335877..336752 1 NC_013960.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_2786 ABC transporter ATPase; ABC transporter 336752 8915309 Nhal_0341 Nitrosococcus halophilus Nc4 ABC transporter YP_003525924.1 335877 D 472759 CDS YP_003525925.1 292490486 8915310 336749..337531 1 NC_013960.1 PFAM: protein of unknown function DUF140; KEGG: noc:Noc_2785 hypothetical protein; hypothetical protein 337531 8915310 Nhal_0342 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525925.1 336749 D 472759 CDS YP_003525926.1 292490487 8915311 337533..338000 1 NC_013960.1 PFAM: hypothetical protein; KEGG: noc:Noc_2784 ABC-type transporter involved in resistance to organic solvents periplasmic component; ABC transporter substrate-binding protein 338000 8915311 Nhal_0343 Nitrosococcus halophilus Nc4 ABC transporter substrate-binding protein YP_003525926.1 337533 D 472759 CDS YP_003525927.1 292490488 8915312 338079..338720 1 NC_013960.1 PFAM: toluene tolerance protein; KEGG: noc:Noc_2782 toluene tolerance protein; toluene tolerance protein 338720 8915312 Nhal_0344 Nitrosococcus halophilus Nc4 toluene tolerance protein YP_003525927.1 338079 D 472759 CDS YP_003525928.1 292490489 8915313 338721..339086 1 NC_013960.1 PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: noc:Noc_2783 sulfate transporter/antisigma-factor antagonist STAS; sulfate transporter/antisigma-factor antagonist STAS 339086 8915313 Nhal_0345 Nitrosococcus halophilus Nc4 sulfate transporter/antisigma-factor antagonist STAS YP_003525928.1 338721 D 472759 CDS YP_003525929.1 292490490 8915315 339649..340293 1 NC_013960.1 PFAM: toluene tolerance protein; KEGG: noc:Noc_2782 toluene tolerance protein; toluene tolerance protein 340293 8915315 Nhal_0347 Nitrosococcus halophilus Nc4 toluene tolerance protein YP_003525929.1 339649 D 472759 CDS YP_003525930.1 292490491 8915316 340390..340617 1 NC_013960.1 PFAM: BolA family protein; KEGG: noc:Noc_2781 BolA-like protein; BolA family protein 340617 8915316 Nhal_0348 Nitrosococcus halophilus Nc4 BolA family protein YP_003525930.1 340390 D 472759 CDS YP_003525931.1 292490492 8915317 340678..341973 1 NC_013960.1 TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: noc:Noc_2780 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 341973 8915317 Nhal_0349 Nitrosococcus halophilus Nc4 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_003525931.1 340678 D 472759 CDS YP_003525932.1 292490493 8915318 341966..342607 1 NC_013960.1 KEGG: noc:Noc_2779 ATP phosphoribosyltransferase catalytic subunit; TIGRFAM: ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; ATP phosphoribosyltransferase 342607 8915318 Nhal_0350 Nitrosococcus halophilus Nc4 ATP phosphoribosyltransferase YP_003525932.1 341966 D 472759 CDS YP_003525933.1 292490494 8915319 342600..343901 1 NC_013960.1 KEGG: noc:Noc_2778 histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; PFAM: histidinol dehydrogenase; histidinol dehydrogenase 343901 8915319 Nhal_0351 Nitrosococcus halophilus Nc4 histidinol dehydrogenase YP_003525933.1 342600 D 472759 CDS YP_003525934.1 292490495 8915320 343904..344980 1 NC_013960.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; Allinase-like; KEGG: noc:Noc_2777 histidinol-phosphate aminotransferase; histidinol-phosphate aminotransferase 344980 8915320 Nhal_0352 Nitrosococcus halophilus Nc4 histidinol-phosphate aminotransferase YP_003525934.1 343904 D 472759 CDS YP_003525935.1 292490496 8915321 345295..346053 1 NC_013960.1 PFAM: protein of unknown function DUF34; KEGG: pap:PSPA7_5016 hypothetical protein; hypothetical protein 346053 8915321 Nhal_0353 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525935.1 345295 D 472759 CDS YP_003525936.1 292490497 8915322 complement(346157..347050) 1 NC_013960.1 PFAM: formate/nitrite transporter; KEGG: noc:Noc_0109 formate/nitrite transporter; formate/nitrite transporter 347050 8915322 Nhal_0354 Nitrosococcus halophilus Nc4 formate/nitrite transporter YP_003525936.1 346157 R 472759 CDS YP_003525937.1 292490498 8915323 347601..347822 1 NC_013960.1 hypothetical protein 347822 8915323 Nhal_0355 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525937.1 347601 D 472759 CDS YP_003525938.1 292490499 8915325 complement(347958..349070) 1 NC_013960.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: dps:DP1198 glutamate dehydrogenase; glutamate dehydrogenase (NAD(P)(+)) 349070 8915325 Nhal_0357 Nitrosococcus halophilus Nc4 glutamate dehydrogenase (NAD(P)(+)) YP_003525938.1 347958 R 472759 CDS YP_003525939.1 292490500 8915326 349338..350495 1 NC_013960.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0442 transposase; transposase, IS605 OrfB family 350495 8915326 Nhal_0358 Nitrosococcus halophilus Nc4 transposase, IS605 OrfB family YP_003525939.1 349338 D 472759 CDS YP_003525940.1 292490501 8915327 350722..351744 1 NC_013960.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase; KEGG: noc:Noc_2960 tRNA-dihydrouridine synthase A; TIM-barrel protein, yjbN family 351744 8915327 Nhal_0359 Nitrosococcus halophilus Nc4 TIM-barrel protein, yjbN family YP_003525940.1 350722 D 472759 CDS YP_003525941.1 292490502 8915328 complement(351830..353086) 1 NC_013960.1 KEGG: noc:Noc_2963 hypothetical protein; hypothetical protein 353086 8915328 Nhal_0360 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525941.1 351830 R 472759 CDS YP_003525942.1 292490503 8915329 complement(353076..354122) 1 NC_013960.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase AAA; SMART: AAA ATPase; KEGG: noc:Noc_2964 hypothetical protein; ATPase AAA 354122 8915329 Nhal_0361 Nitrosococcus halophilus Nc4 ATPase AAA YP_003525942.1 353076 R 472759 CDS YP_003525943.1 292490504 8915330 complement(354142..355599) 1 NC_013960.1 PFAM: amidohydrolase 2; KEGG: nmu:Nmul_A0625 amidohydrolase 2; amidohydrolase 355599 8915330 Nhal_0362 Nitrosococcus halophilus Nc4 amidohydrolase YP_003525943.1 354142 R 472759 CDS YP_003525944.1 292490505 8915331 complement(355725..357893) 1 NC_013960.1 PFAM: lytic transglycosylase catalytic; peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: noc:Noc_2988 lytic transglycosylase; lytic transglycosylase 357893 8915331 Nhal_0363 Nitrosococcus halophilus Nc4 lytic transglycosylase YP_003525944.1 355725 R 472759 CDS YP_003525945.1 292490506 8915332 358248..358715 1 NC_013960.1 KEGG: noc:Noc_2987 hypothetical protein; hypothetical protein 358715 8915332 Nhal_0364 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525945.1 358248 D 472759 CDS YP_003525946.1 292490507 8915333 358814..359263 1 NC_013960.1 KEGG: noc:Noc_2986 PAS domain-containing protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; PAS domain containing protein; PAS sensor protein 359263 8915333 Nhal_0365 Nitrosococcus halophilus Nc4 PAS sensor protein YP_003525946.1 358814 D 472759 CDS YP_003525947.1 292490508 8915334 359390..360013 1 NC_013960.1 KEGG: noc:Noc_2985 hypothetical protein; hypothetical protein 360013 8915334 Nhal_0366 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525947.1 359390 D 472759 CDS YP_003525948.1 292490509 8915335 360022..360678 1 NC_013960.1 KEGG: noc:Noc_2984 hypothetical protein; hypothetical protein 360678 8915335 Nhal_0367 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525948.1 360022 D 472759 CDS YP_003525949.1 292490510 8915336 360758..360940 1 NC_013960.1 hypothetical protein 360940 8915336 Nhal_0368 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525949.1 360758 D 472759 CDS YP_003525950.1 292490511 8915337 361028..362473 1 NC_013960.1 PFAM: pyridoxal-dependent decarboxylase; KEGG: noc:Noc_2983 aromatic-L-amino-acid decarboxylase; pyridoxal-dependent decarboxylase 362473 8915337 Nhal_0369 Nitrosococcus halophilus Nc4 pyridoxal-dependent decarboxylase YP_003525950.1 361028 D 472759 CDS YP_003525951.1 292490512 8915338 complement(362475..363113) 1 NC_013960.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: noc:Noc_2982 CDP-alcohol phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 363113 8915338 Nhal_0370 Nitrosococcus halophilus Nc4 CDP-alcohol phosphatidyltransferase YP_003525951.1 362475 R 472759 CDS YP_003525952.1 292490513 8915339 363317..364474 1 NC_013960.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0442 transposase; transposase, IS605 OrfB family 364474 8915339 Nhal_0371 Nitrosococcus halophilus Nc4 transposase, IS605 OrfB family YP_003525952.1 363317 D 472759 CDS YP_003525953.1 292490514 8915340 complement(364744..365907) 1 NC_013960.1 PFAM: myo-inositol-1-phosphate synthase; myo-inositol-1-phosphate synthase GAPDH domain protein; KEGG: noc:Noc_2981 myo-inositol-1-phosphate synthase; myo-inositol-1-phosphate synthase 365907 8915340 Nhal_0372 Nitrosococcus halophilus Nc4 myo-inositol-1-phosphate synthase YP_003525953.1 364744 R 472759 CDS YP_003525954.1 292490515 8915341 complement(366197..367405) 1 NC_013960.1 KEGG: noc:Noc_2980 oxidoreductase; oxidoreductase 367405 8915341 Nhal_0373 Nitrosococcus halophilus Nc4 oxidoreductase YP_003525954.1 366197 R 472759 CDS YP_003525955.1 292490516 8915342 367552..369504 1 NC_013960.1 KEGG: noc:Noc_2979 PAS sensor, serine phosphatase RsbU regulator of sigma subunit; TIGRFAM: PAS sensor protein; PFAM: stage II sporulation E family protein; PAS fold domain protein; PAS fold-4 domain protein; PAS fold-3 domain protein; SMART: protein phosphatase 2C domain protein; PAC repeat-containing protein; PAS domain containing protein; PAS sensor protein 369504 8915342 Nhal_0374 Nitrosococcus halophilus Nc4 PAS sensor protein YP_003525955.1 367552 D 472759 CDS YP_003525956.1 292490517 8915344 370021..372249 1 NC_013960.1 PFAM: oligosaccharyl transferase STT3 subunit; KEGG: wsu:WS0043 oligosaccharyltransferase; oligosaccharyl transferase STT3 subunit 372249 8915344 Nhal_0376 Nitrosococcus halophilus Nc4 oligosaccharyl transferase STT3 subunit YP_003525956.1 370021 D 472759 CDS YP_003525957.1 292490518 8915345 372593..373969 1 NC_013960.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pna:Pnap_1699 HNH endonuclease; HNH endonuclease 373969 8915345 Nhal_0377 Nitrosococcus halophilus Nc4 HNH endonuclease YP_003525957.1 372593 D 472759 CDS YP_003525958.1 292490519 8915346 374033..374989 1 NC_013960.1 PFAM: glycosyl transferase family 2; KEGG: amc:MADE_02590 glycosyl transferase, family 2; family 2 glycosyl transferase 374989 8915346 Nhal_0378 Nitrosococcus halophilus Nc4 family 2 glycosyl transferase YP_003525958.1 374033 D 472759 CDS YP_003525959.1 292490520 8915347 374976..376241 1 NC_013960.1 PFAM: glycosyl transferase group 1; KEGG: amc:MADE_02589 glycosyltransferase; group 1 glycosyl transferase 376241 8915347 Nhal_0379 Nitrosococcus halophilus Nc4 group 1 glycosyl transferase YP_003525959.1 374976 D 472759 CDS YP_003525960.1 292490521 8915348 376238..376963 1 NC_013960.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: mno:Mnod_6874 methyltransferase type 11; type 11 methyltransferase 376963 8915348 Nhal_0380 Nitrosococcus halophilus Nc4 type 11 methyltransferase YP_003525960.1 376238 D 472759 CDS YP_003525961.1 292490522 8915349 376964..378001 1 NC_013960.1 PFAM: glycosyl transferase group 1; KEGG: sat:SYN_00818 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; group 1 glycosyl transferase 378001 8915349 Nhal_0381 Nitrosococcus halophilus Nc4 group 1 glycosyl transferase YP_003525961.1 376964 D 472759 CDS YP_003525962.1 292490523 8915350 378015..379235 1 NC_013960.1 KEGG: abu:Abu_0685 hypothetical protein; glycosyltransferase 379235 8915350 Nhal_0382 Nitrosococcus halophilus Nc4 glycosyltransferase YP_003525962.1 378015 D 472759 CDS YP_003525963.1 292490524 8915351 379461..384515 1 NC_013960.1 TIGRFAM: methyltransferase FkbM family; PFAM: glycosyl transferase group 1; KEGG: ppg:PputGB1_1389 methyltransferase type 12; FkbM family methyltransferase 384515 8915351 Nhal_0383 Nitrosococcus halophilus Nc4 FkbM family methyltransferase YP_003525963.1 379461 D 472759 CDS YP_003525964.1 292490525 8915352 384616..385425 1 NC_013960.1 KEGG: pub:SAR11_0555 CMAS family protein; hypothetical protein 385425 8915352 Nhal_0384 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525964.1 384616 D 472759 CDS YP_003525965.1 292490526 8915354 complement(385802..386689) 1 NC_013960.1 KEGG: maq:Maqu_2626 hypothetical protein; hypothetical protein 386689 8915354 Nhal_0386 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525965.1 385802 R 472759 CDS YP_003525966.1 292490527 8915355 complement(386921..387157) 1 NC_013960.1 hypothetical protein 387157 8915355 Nhal_0387 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525966.1 386921 R 472759 CDS YP_003525967.1 292490528 8915356 complement(387247..387441) 1 NC_013960.1 hypothetical protein 387441 8915356 Nhal_0388 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525967.1 387247 R 472759 CDS YP_003525968.1 292490529 8915359 complement(388330..388575) 1 NC_013960.1 hypothetical protein 388575 8915359 Nhal_0391 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525968.1 388330 R 472759 CDS YP_003525969.1 292490530 8915360 388605..391280 1 NC_013960.1 KEGG: bpt:Bpet2300 hypothetical protein; hypothetical protein 391280 8915360 Nhal_0392 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525969.1 388605 D 472759 CDS YP_003525970.1 292490531 8915361 391314..392339 1 NC_013960.1 PFAM: polysaccharide biosynthesis protein CapD; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: gme:Gmet_0458 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein CapD 392339 8915361 Nhal_0393 Nitrosococcus halophilus Nc4 polysaccharide biosynthesis protein CapD YP_003525970.1 391314 D 472759 CDS YP_003525971.1 292490532 8915362 392373..393275 1 NC_013960.1 PFAM: protein of unknown function DUF343; KEGG: sdn:Sden_1760 methyltransferase type 11; hypothetical protein 393275 8915362 Nhal_0394 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525971.1 392373 D 472759 CDS YP_003525972.1 292490533 8915363 393313..393600 1 NC_013960.1 hypothetical protein 393600 8915363 Nhal_0395 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525972.1 393313 D 472759 CDS YP_003525973.1 292490534 8915364 393597..394757 1 NC_013960.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: har:HEAR1121 polysaccharide biosynthesis protein; DegT/DnrJ/EryC1/StrS aminotransferase 394757 8915364 Nhal_0396 Nitrosococcus halophilus Nc4 DegT/DnrJ/EryC1/StrS aminotransferase YP_003525973.1 393597 D 472759 CDS YP_003525974.1 292490535 8915365 394754..395479 1 NC_013960.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: aeh:Mlg_2324 acylneuraminate cytidylyltransferase; acylneuraminate cytidylyltransferase 395479 8915365 Nhal_0397 Nitrosococcus halophilus Nc4 acylneuraminate cytidylyltransferase YP_003525974.1 394754 D 472759 CDS YP_003525975.1 292490536 8915366 395476..396984 1 NC_013960.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pfo:Pfl01_1522 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 396984 8915366 Nhal_0398 Nitrosococcus halophilus Nc4 GCN5-like N-acetyltransferase YP_003525975.1 395476 D 472759 CDS YP_003525976.1 292490537 8915367 396988..398043 1 NC_013960.1 PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: pfo:Pfl01_1523 N-acetylneuraminate synthase; N-acylneuraminate-9-phosphate synthase 398043 8915367 Nhal_0399 Nitrosococcus halophilus Nc4 N-acylneuraminate-9-phosphate synthase YP_003525976.1 396988 D 472759 CDS YP_003525977.1 292490538 8915368 398059..399084 1 NC_013960.1 KEGG: rfr:Rfer_0680 heparinase II/III-like; hypothetical protein 399084 8915368 Nhal_0400 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525977.1 398059 D 472759 CDS YP_003525978.1 292490539 8915369 399108..400331 1 NC_013960.1 PFAM: transposase mutator type; KEGG: son:SO_0708 transposase mutator family protein; transposase mutator type 400331 8915369 Nhal_0401 Nitrosococcus halophilus Nc4 transposase mutator type YP_003525978.1 399108 D 472759 CDS YP_003525979.1 292490540 8915370 400328..401266 1 NC_013960.1 PFAM: Heparinase II/III; KEGG: hypothetical protein; Heparinase II/III 401266 8915370 Nhal_0402 Nitrosococcus halophilus Nc4 Heparinase II/III YP_003525979.1 400328 D 472759 CDS YP_003525980.1 292490541 8915371 402176..403738 1 NC_013960.1 PFAM: glycosyl transferase group 1; KEGG: aeh:Mlg_0137 glycosyl transferase, group 1; group 1 glycosyl transferase 403738 8915371 Nhal_0403 Nitrosococcus halophilus Nc4 group 1 glycosyl transferase YP_003525980.1 402176 D 472759 CDS YP_003525981.1 292490542 8915372 404072..405814 1 NC_013960.1 KEGG: ppg:PputGB1_1386 hypothetical protein; hypothetical protein 405814 8915372 Nhal_0404 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525981.1 404072 D 472759 CDS YP_003525982.1 292490543 8915373 complement(405857..410635) 1 NC_013960.1 PFAM: NAD-glutamate dehydrogenase; KEGG: noc:Noc_2978 NAD-glutamate dehydrogenase; NAD-glutamate dehydrogenase 410635 8915373 Nhal_0405 Nitrosococcus halophilus Nc4 NAD-glutamate dehydrogenase YP_003525982.1 405857 R 472759 CDS YP_003525983.1 292490544 8915374 complement(410890..411315) 1 NC_013960.1 PFAM: ATP-binding region ATPase domain protein; KEGG: noc:Noc_2977 anti-sigma regulatory factor (Ser/Thr protein kinase; ATP-binding region ATPase domain-containing protein 411315 8915374 Nhal_0406 Nitrosococcus halophilus Nc4 ATP-binding region ATPase domain-containing protein YP_003525983.1 410890 R 472759 CDS YP_003525984.1 292490545 8915375 complement(411369..411665) 1 NC_013960.1 PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: noc:Noc_2976 anti-sigma factor antagonist; sulfate transporter/antisigma-factor antagonist STAS 411665 8915375 Nhal_0407 Nitrosococcus halophilus Nc4 sulfate transporter/antisigma-factor antagonist STAS YP_003525984.1 411369 R 472759 CDS YP_003525985.1 292490546 8915376 411899..413401 1 NC_013960.1 PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: ATPase AAA; single-stranded nucleic acid binding R3H domain protein; KEGG: noc:Noc_2975 single-stranded nucleic acid binding R3H; single-stranded nucleic acid binding R3H domain-containing protein 413401 8915376 Nhal_0408 Nitrosococcus halophilus Nc4 single-stranded nucleic acid binding R3H domain-containing protein YP_003525985.1 411899 D 472759 CDS YP_003525986.1 292490547 8915377 complement(413446..413847) 1 NC_013960.1 PFAM: DoxX family protein; KEGG: noc:Noc_2974 DoxX; DoxX family protein 413847 8915377 Nhal_0409 Nitrosococcus halophilus Nc4 DoxX family protein YP_003525986.1 413446 R 472759 CDS YP_003525987.1 292490548 8915378 414017..417178 1 NC_013960.1 PFAM: glycoside hydrolase family 31; glycoside hydrolase starch-binding; KEGG: pin:Ping_2529 glycoside hydrolase family protein; glycoside hydrolase family protein 417178 8915378 Nhal_0410 Nitrosococcus halophilus Nc4 glycoside hydrolase family protein YP_003525987.1 414017 D 472759 CDS YP_003525988.1 292490549 8915379 complement(417443..418351) 1 NC_013960.1 KEGG: mmw:Mmwyl1_3673 hypothetical protein; hypothetical protein 418351 8915379 Nhal_0411 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525988.1 417443 R 472759 CDS YP_003525989.1 292490550 8915380 418695..422549 1 NC_013960.1 PFAM: FAD linked oxidase; KEGG: tgr:Tgr7_2778 FAD linked oxidase domain-containing protein; FAD linked oxidase 422549 8915380 Nhal_0412 Nitrosococcus halophilus Nc4 FAD linked oxidase YP_003525989.1 418695 D 472759 CDS YP_003525990.1 292490551 8915381 complement(422638..423099) 1 NC_013960.1 KEGG: tgr:Tgr7_2593 hypothetical protein; hypothetical protein 423099 8915381 Nhal_0413 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525990.1 422638 R 472759 CDS YP_003525991.1 292490552 8915382 423585..425012 1 NC_013960.1 KEGG: noc:Noc_2973 hypothetical protein; hypothetical protein 425012 8915382 Nhal_0414 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525991.1 423585 D 472759 CDS YP_003525992.1 292490553 8915383 425077..425640 1 NC_013960.1 PFAM: FMN-binding domain protein; KEGG: noc:Noc_2972 hypothetical protein; FMN-binding domain-containing protein 425640 8915383 Nhal_0415 Nitrosococcus halophilus Nc4 FMN-binding domain-containing protein YP_003525992.1 425077 D 472759 CDS YP_003525993.1 292490554 8915384 425640..426620 1 NC_013960.1 KEGG: mca:MCA2732 hypothetical protein; hypothetical protein 426620 8915384 Nhal_0416 Nitrosococcus halophilus Nc4 hypothetical protein YP_003525993.1 425640 D 472759 CDS YP_003525994.1 292490555 8915385 426691..427221 1 NC_013960.1 PFAM: cytochrome C oxidase subunit II; KEGG: noc:Noc_2971 cytochrome C oxidase subunit II; cytochrome C oxidase subunit II 427221 8915385 Nhal_0417 Nitrosococcus halophilus Nc4 cytochrome C oxidase subunit II YP_003525994.1 426691 D 472759 CDS YP_003525995.1 292490556 8915386 427262..428737 1 NC_013960.1 PFAM: cytochrome C oxidase subunit I; KEGG: noc:Noc_2970 cytochrome C oxidase subunit I; cytochrome C oxidase subunit I 428737 8915386 Nhal_0418 Nitrosococcus halophilus Nc4 cytochrome C oxidase subunit I YP_003525995.1 427262 D 472759 CDS YP_003525996.1 292490557 8915387 429007..429633 1 NC_013960.1 PFAM: electron transporter SCO1/SenC; KEGG: noc:Noc_2969 electron transporter SCO1/SenC; electron transporter SCO1/SenC 429633 8915387 Nhal_0419 Nitrosococcus halophilus Nc4 electron transporter SCO1/SenC YP_003525996.1 429007 D 472759 CDS YP_003525997.1 292490558 8915388 429623..430231 1 NC_013960.1 KEGG: noc:Noc_2968 transmembrane protein; transmembrane protein 430231 8915388 Nhal_0420 Nitrosococcus halophilus Nc4 transmembrane protein YP_003525997.1 429623 D 472759 CDS YP_003525998.1 292490559 8915389 complement(430309..430770) 1 NC_013960.1 TIGRFAM: Rrf2 family transcriptional regulator; PFAM: protein of unknown function UPF0074; KEGG: noc:Noc_2967 hypothetical protein; Rrf2 family transcriptional regulator 430770 8915389 Nhal_0421 Nitrosococcus halophilus Nc4 Rrf2 family transcriptional regulator YP_003525998.1 430309 R 472759 CDS YP_003525999.1 292490560 8915390 complement(430887..434549) 1 NC_013960.1 PFAM: hydantoinase B/oxoprolinase; hydantoinaseoxoprolinase domain protein; hydantoinase/oxoprolinase; KEGG: noc:Noc_0378 5-oxoprolinase (ATP-hydrolyzing); 5-oxoprolinase 434549 8915390 Nhal_0422 Nitrosococcus halophilus Nc4 5-oxoprolinase YP_003525999.1 430887 R 472759 CDS YP_003526000.1 292490561 8915391 434791..435948 1 NC_013960.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0442 transposase; transposase, IS605 OrfB family 435948 8915391 Nhal_0423 Nitrosococcus halophilus Nc4 transposase, IS605 OrfB family YP_003526000.1 434791 D 472759 CDS YP_003526001.1 292490562 8915392 436566..436850 1 NC_013960.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: noc:Noc_2966 histone-like DNA-binding protein; histone family protein DNA-binding protein 436850 8915392 Nhal_0424 Nitrosococcus halophilus Nc4 histone family protein DNA-binding protein YP_003526001.1 436566 D 472759 CDS YP_003526002.1 292490563 8915393 437127..437555 1 NC_013960.1 hypothetical protein 437555 8915393 Nhal_0425 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526002.1 437127 D 472759 CDS YP_003526003.1 292490564 8915394 complement(437710..438624) 1 NC_013960.1 KEGG: sfr:Sfri_0093 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase 438624 8915394 Nhal_0426 Nitrosococcus halophilus Nc4 diguanylate cyclase YP_003526003.1 437710 R 472759 CDS YP_003526004.1 292490565 8915395 complement(438864..440087) 1 NC_013960.1 PFAM: transposase mutator type; KEGG: son:SO_0708 transposase mutator family protein; transposase mutator type 440087 8915395 Nhal_0427 Nitrosococcus halophilus Nc4 transposase mutator type YP_003526004.1 438864 R 472759 CDS YP_003526005.1 292490566 8915396 440194..440682 1 NC_013960.1 KEGG: spe:Spro_4285 zinc transporter ZupT; zinc transporter ZupT 440682 8915396 Nhal_0428 Nitrosococcus halophilus Nc4 zinc transporter ZupT YP_003526005.1 440194 D 472759 CDS YP_003526006.1 292490567 8915397 440708..441328 1 NC_013960.1 PFAM: Resolvase domain; MerR family transcriptional regulator; KEGG: xfm:Xfasm12_1564 hypothetical protein; resolvase 441328 8915397 Nhal_0429 Nitrosococcus halophilus Nc4 resolvase YP_003526006.1 440708 D 472759 CDS YP_003526007.1 292490568 8915398 441306..442460 1 NC_013960.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0401 transposase; transposase, IS605 OrfB family 442460 8915398 Nhal_0430 Nitrosococcus halophilus Nc4 transposase, IS605 OrfB family YP_003526007.1 441306 D 472759 CDS YP_003526008.1 292490569 8915399 442504..443238 1 NC_013960.1 KEGG: dat:HRM2_15520 selenocysteine protein; selenocysteine protein 443238 8915399 Nhal_0431 Nitrosococcus halophilus Nc4 selenocysteine protein YP_003526008.1 442504 D 472759 CDS YP_003526009.1 292490570 8915400 complement(443331..443963) 1 NC_013960.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: gur:Gura_3459 diguanylate cyclase with PAS/PAC sensor; type 11 methyltransferase 443963 8915400 Nhal_0432 Nitrosococcus halophilus Nc4 type 11 methyltransferase YP_003526009.1 443331 R 472759 CDS YP_003526010.1 292490571 8915403 445065..445163 1 NC_013960.1 hypothetical protein 445163 8915403 Nhal_0435 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526010.1 445065 D 472759 CDS YP_003526011.1 292490572 8915405 445495..447666 1 NC_013960.1 KEGG: noc:Noc_2897 ribonuclease R; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; ribonuclease B OB region domain; RNA binding S1 domain protein; ribonuclease R winged-helix domain protein; SMART: Cold shock protein; RNA binding S1 domain protein; ribonuclease R 447666 8915405 Nhal_0436 Nitrosococcus halophilus Nc4 ribonuclease R YP_003526011.1 445495 D 472759 CDS YP_003526012.1 292490573 8915406 complement(447834..449417) 1 NC_013960.1 PFAM: multicopper oxidase type 3; multicopper oxidase type 2; KEGG: neu:NE0782 periplasmic cell division protein (SufI); Bilirubin oxidase 449417 8915406 Nhal_0437 Nitrosococcus halophilus Nc4 Bilirubin oxidase YP_003526012.1 447834 R 472759 CDS YP_003526013.1 292490574 8915407 complement(449592..450512) 1 NC_013960.1 KEGG: noc:Noc_2896 phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related; phosphatidylserine decarboxylase 450512 8915407 Nhal_0438 Nitrosococcus halophilus Nc4 phosphatidylserine decarboxylase YP_003526013.1 449592 R 472759 CDS YP_003526014.1 292490575 8915408 450748..452490 1 NC_013960.1 KEGG: noc:Noc_2895 type II secretion system protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; general secretory system protein E; SMART: AAA ATPase; general secretory pathway protein E 452490 8915408 Nhal_0439 Nitrosococcus halophilus Nc4 general secretory pathway protein E YP_003526014.1 450748 D 472759 CDS YP_003526015.1 292490576 8915409 452493..453725 1 NC_013960.1 PFAM: type II secretion system protein; KEGG: noc:Noc_2894 general secretion pathway protein F; type II secretion system protein 453725 8915409 Nhal_0440 Nitrosococcus halophilus Nc4 type II secretion system protein YP_003526015.1 452493 D 472759 CDS YP_003526016.1 292490577 8915410 453741..454175 1 NC_013960.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: noc:Noc_2893 general secretion pathway protein G; general secretion pathway protein G 454175 8915410 Nhal_0441 Nitrosococcus halophilus Nc4 general secretion pathway protein G YP_003526016.1 453741 D 472759 CDS YP_003526017.1 292490578 8915411 454218..454754 1 NC_013960.1 TIGRFAM: general secretion pathway protein H; KEGG: noc:Noc_2892 general secretion pathway protein H; general secretion pathway protein H 454754 8915411 Nhal_0442 Nitrosococcus halophilus Nc4 general secretion pathway protein H YP_003526017.1 454218 D 472759 CDS YP_003526018.1 292490579 8915412 454747..455190 1 NC_013960.1 KEGG: noc:Noc_2891 general secretion pathway protein H; general secretion pathway protein H 455190 8915412 Nhal_0443 Nitrosococcus halophilus Nc4 general secretion pathway protein H YP_003526018.1 454747 D 472759 CDS YP_003526019.1 292490580 8915413 455303..456520 1 NC_013960.1 KEGG: noc:Noc_2890 hypothetical protein; hypothetical protein 456520 8915413 Nhal_0444 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526019.1 455303 D 472759 CDS YP_003526020.1 292490581 8915414 456576..457745 1 NC_013960.1 PFAM: glycosyl transferase group 1; KEGG: noc:Noc_2889 glycosyl transferase, group 1; group 1 glycosyl transferase 457745 8915414 Nhal_0445 Nitrosococcus halophilus Nc4 group 1 glycosyl transferase YP_003526020.1 456576 D 472759 CDS YP_003526021.1 292490582 8915416 458680..459150 1 NC_013960.1 KEGG: noc:Noc_2987 hypothetical protein; hypothetical protein 459150 8915416 Nhal_0447 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526021.1 458680 D 472759 CDS YP_003526022.1 292490583 8915417 459759..460217 1 NC_013960.1 KEGG: noc:Noc_1824 hypothetical protein; hypothetical protein 460217 8915417 Nhal_0448 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526022.1 459759 D 472759 CDS YP_003526023.1 292490584 8915418 460264..461046 1 NC_013960.1 KEGG: noc:Noc_1823 hypothetical protein; hypothetical protein 461046 8915418 Nhal_0449 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526023.1 460264 D 472759 CDS YP_003526024.1 292490585 8915419 461392..462267 1 NC_013960.1 PFAM: fatty acid hydroxylase; KEGG: mca:MCA1012 hypothetical protein; fatty acid hydroxylase 462267 8915419 Nhal_0450 Nitrosococcus halophilus Nc4 fatty acid hydroxylase YP_003526024.1 461392 D 472759 CDS YP_003526025.1 292490586 8915421 463121..464266 1 NC_013960.1 PFAM: transposase IS4 family protein; KEGG: aby:ABAYE3624 IS4 family transposase; transposase IS4 family protein 464266 8915421 Nhal_0452 Nitrosococcus halophilus Nc4 transposase IS4 family protein YP_003526025.1 463121 D 472759 CDS YP_003526026.1 292490587 8915422 464496..464771 1 NC_013960.1 hypothetical protein 464771 8915422 Nhal_0453 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526026.1 464496 D 472759 CDS YP_003526027.1 292490588 8915423 465128..467182 1 NC_013960.1 KEGG: noc:Noc_0207 protein phosphatase 2C-like, stage II sporulation E; TIGRFAM: PAS sensor protein; PFAM: stage II sporulation E family protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: protein phosphatase 2C domain protein; PAC repeat-containing protein; PAS domain containing protein; PAS sensor protein 467182 8915423 Nhal_0454 Nitrosococcus halophilus Nc4 PAS sensor protein YP_003526027.1 465128 D 472759 CDS YP_003526028.1 292490589 8915424 467254..469293 1 NC_013960.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: noc:Noc_0208 oligopeptidase A; oligopeptidase A 469293 8915424 Nhal_0455 Nitrosococcus halophilus Nc4 oligopeptidase A YP_003526028.1 467254 D 472759 CDS YP_003526029.1 292490590 8915425 469293..470066 1 NC_013960.1 TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: endonuclease/exonuclease/phosphatase; KEGG: noc:Noc_0209 exodeoxyribonuclease III xth; exodeoxyribonuclease III Xth 470066 8915425 Nhal_0456 Nitrosococcus halophilus Nc4 exodeoxyribonuclease III Xth YP_003526029.1 469293 D 472759 CDS YP_003526030.1 292490591 8915426 470119..471930 1 NC_013960.1 SMART: hypothetical protein; KEGG: noc:Noc_0210 hypothetical protein; hypothetical protein 471930 8915426 Nhal_0457 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526030.1 470119 D 472759 CDS YP_003526031.1 292490592 8915427 471971..473434 1 NC_013960.1 TIGRFAM: UbiD family decarboxylase; PFAM: carboxylyase-related protein; KEGG: noc:Noc_0211 carboxylyase-like protein; UbiD family decarboxylase 473434 8915427 Nhal_0458 Nitrosococcus halophilus Nc4 UbiD family decarboxylase YP_003526031.1 471971 D 472759 CDS YP_003526032.1 292490593 8915428 complement(473423..473587) 1 NC_013960.1 hypothetical protein 473587 8915428 Nhal_0459 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526032.1 473423 R 472759 CDS YP_003526033.1 292490594 8915429 473706..474326 1 NC_013960.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: noc:Noc_0213 CDP-alcohol phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 474326 8915429 Nhal_0460 Nitrosococcus halophilus Nc4 CDP-alcohol phosphatidyltransferase YP_003526033.1 473706 D 472759 CDS YP_003526034.1 292490595 8915430 474427..474756 1 NC_013960.1 PFAM: type IV pilus assembly PilZ; KEGG: noc:Noc_0214 hypothetical protein; type IV pilus assembly PilZ 474756 8915430 Nhal_0461 Nitrosococcus halophilus Nc4 type IV pilus assembly PilZ YP_003526034.1 474427 D 472759 CDS YP_003526035.1 292490596 8915431 complement(474855..475100) 1 NC_013960.1 KEGG: noc:Noc_0215 hypothetical protein; hypothetical protein 475100 8915431 Nhal_0462 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526035.1 474855 R 472759 CDS YP_003526036.1 292490597 8915432 complement(475134..476423) 1 NC_013960.1 KEGG: geo:Geob_0338 hypothetical protein; hypothetical protein 476423 8915432 Nhal_0463 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526036.1 475134 R 472759 CDS YP_003526037.1 292490598 8915433 476588..477052 1 NC_013960.1 KEGG: cps:CPS_3386 hypothetical protein; hypothetical protein 477052 8915433 Nhal_0464 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526037.1 476588 D 472759 CDS YP_003526038.1 292490599 8915434 complement(477081..477842) 1 NC_013960.1 TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tgr:Tgr7_0283 HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase 477842 8915434 Nhal_0465 Nitrosococcus halophilus Nc4 HAD-superfamily hydrolase YP_003526038.1 477081 R 472759 CDS YP_003526039.1 292490600 8915435 complement(478027..478653) 1 NC_013960.1 PFAM: protein of unknown function DUF330; KEGG: ank:AnaeK_0375 ABC-type uncharacterized transporter auxiliary component-like protein; hypothetical protein 478653 8915435 Nhal_0466 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526039.1 478027 R 472759 CDS YP_003526040.1 292490601 8915436 complement(478657..479661) 1 NC_013960.1 PFAM: hypothetical protein; KEGG: cbg:CbuG_1274 hypothetical protein; hypothetical protein 479661 8915436 Nhal_0467 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526040.1 478657 R 472759 CDS YP_003526041.1 292490602 8915437 complement(479646..480431) 1 NC_013960.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pfl:PFL_0099 ABC transporter ATP-binding protein; ABC transporter 480431 8915437 Nhal_0468 Nitrosococcus halophilus Nc4 ABC transporter YP_003526041.1 479646 R 472759 CDS YP_003526042.1 292490603 8915438 complement(480433..481575) 1 NC_013960.1 PFAM: protein of unknown function DUF140; KEGG: aeh:Mlg_1205 hypothetical protein; hypothetical protein 481575 8915438 Nhal_0469 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526042.1 480433 R 472759 CDS YP_003526043.1 292490604 8915439 complement(481665..481967) 1 NC_013960.1 KEGG: noc:Noc_0351 hypothetical protein; hypothetical protein 481967 8915439 Nhal_0470 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526043.1 481665 R 472759 CDS YP_003526044.1 292490605 8915440 complement(482241..483671) 1 NC_013960.1 PFAM: FAD linked oxidase; KEGG: noc:Noc_0352 D-lactate dehydrogenase (cytochrome); FAD linked oxidase 483671 8915440 Nhal_0471 Nitrosococcus halophilus Nc4 FAD linked oxidase YP_003526044.1 482241 R 472759 CDS YP_003526045.1 292490606 8915441 complement(483640..484239) 1 NC_013960.1 PFAM: transport-associated; SMART: transport-associated and nodulation region; KEGG: noc:Noc_0353 periplasmic or secreted lipoprotein; transporter 484239 8915441 Nhal_0472 Nitrosococcus halophilus Nc4 transporter YP_003526045.1 483640 R 472759 CDS YP_003526046.1 292490607 8915442 complement(484243..484833) 1 NC_013960.1 TIGRFAM: phosphoheptose isomerase; KEGG: noc:Noc_0354 phosphoheptose isomerase; phosphoheptose isomerase 484833 8915442 Nhal_0473 Nitrosococcus halophilus Nc4 phosphoheptose isomerase YP_003526046.1 484243 R 472759 CDS YP_003526047.1 292490608 8915443 complement(484962..485333) 1 NC_013960.1 PFAM: protein of unknown function UPF0102; KEGG: noc:Noc_0355 hypothetical protein; hypothetical protein 485333 8915443 Nhal_0474 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526047.1 484962 R 472759 CDS YP_003526048.1 292490609 8915444 complement(485330..487246) 1 NC_013960.1 PFAM: LppC family lipoprotein; KEGG: noc:Noc_0356 LppC lipoprotein; LppC family lipoprotein 487246 8915444 Nhal_0475 Nitrosococcus halophilus Nc4 LppC family lipoprotein YP_003526048.1 485330 R 472759 CDS YP_003526049.1 292490610 8915445 487301..488158 1 NC_013960.1 PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: noc:Noc_0357 hypothetical protein; uroporphyrin-III C/tetrapyrrole methyltransferase 488158 8915445 Nhal_0476 Nitrosococcus halophilus Nc4 uroporphyrin-III C/tetrapyrrole methyltransferase YP_003526049.1 487301 D 472759 CDS YP_003526050.1 292490611 8915446 complement(488160..489539) 1 NC_013960.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: pfo:Pfl01_3771 periplasmic sensor signal transduction histidine kinase; ATP-binding region ATPase domain-containing protein 489539 8915446 Nhal_0477 Nitrosococcus halophilus Nc4 ATP-binding region ATPase domain-containing protein YP_003526050.1 488160 R 472759 CDS YP_003526051.1 292490612 8915447 complement(489616..490287) 1 NC_013960.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: tmz:Tmz1t_1913 transcriptional regulator; response regulator receiver 490287 8915447 Nhal_0478 Nitrosococcus halophilus Nc4 response regulator receiver YP_003526051.1 489616 R 472759 CDS YP_003526052.1 292490613 8915448 complement(490473..490793) 1 NC_013960.1 KEGG: ppw:PputW619_1786 peptidase; hypothetical protein 490793 8915448 Nhal_0479 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526052.1 490473 R 472759 CDS YP_003526053.1 292490614 8915449 491010..491933 1 NC_013960.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: noc:Noc_2871 cation efflux protein; cation diffusion facilitator family transporter 491933 8915449 Nhal_0480 Nitrosococcus halophilus Nc4 cation diffusion facilitator family transporter YP_003526053.1 491010 D 472759 CDS YP_003526054.1 292490615 8915451 492551..493000 1 NC_013960.1 TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: noc:Noc_2870 hypothetical protein; MraZ protein 493000 8915451 Nhal_0481 Nitrosococcus halophilus Nc4 MraZ protein YP_003526054.1 492551 D 472759 CDS YP_003526055.1 292490616 8915452 493010..493963 1 NC_013960.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: noc:Noc_2869 methyltransferase; S-adenosyl-methyltransferase MraW 493963 8915452 Nhal_0482 Nitrosococcus halophilus Nc4 S-adenosyl-methyltransferase MraW YP_003526055.1 493010 D 472759 CDS YP_003526056.1 292490617 8915453 493980..494252 1 NC_013960.1 TIGRFAM: cell division protein FtsL; PFAM: cell division protein FtsL; KEGG: noc:Noc_2868 cell division protein, FtsL -like; cell division protein FtsL 494252 8915453 Nhal_0483 Nitrosococcus halophilus Nc4 cell division protein FtsL YP_003526056.1 493980 D 472759 CDS YP_003526057.1 292490618 8915454 494257..495960 1 NC_013960.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: noc:Noc_2867 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 495960 8915454 Nhal_0484 Nitrosococcus halophilus Nc4 peptidoglycan glycosyltransferase YP_003526057.1 494257 D 472759 CDS YP_003526058.1 292490619 8915455 495969..497540 1 NC_013960.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: noc:Noc_2866 UDP-N-acetylmuramyl-tripeptide synthetase; UDP-N-acetylmuramyl-tripeptide synthetase 497540 8915455 Nhal_0485 Nitrosococcus halophilus Nc4 UDP-N-acetylmuramyl-tripeptide synthetase YP_003526058.1 495969 D 472759 CDS YP_003526059.1 292490620 8915456 497558..498904 1 NC_013960.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: noc:Noc_2865 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D -alanyl ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase 498904 8915456 Nhal_0486 Nitrosococcus halophilus Nc4 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase YP_003526059.1 497558 D 472759 CDS YP_003526060.1 292490621 8915457 498909..499985 1 NC_013960.1 KEGG: noc:Noc_2864 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: glycosyl transferase family 4; phospho-N-acetylmuramoyl-pentapeptide- transferase 499985 8915457 Nhal_0487 Nitrosococcus halophilus Nc4 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_003526060.1 498909 D 472759 CDS YP_003526061.1 292490622 8915458 500066..501424 1 NC_013960.1 TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: noc:Noc_2863 UDP-N-acetylmuramoylalanine-D-glutamate ligase; UDP-N-acetylmuramoylalanine/D-glutamate ligase 501424 8915458 Nhal_0488 Nitrosococcus halophilus Nc4 UDP-N-acetylmuramoylalanine/D-glutamate ligase YP_003526061.1 500066 D 472759 CDS YP_003526062.1 292490623 8915459 501421..502584 1 NC_013960.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: noc:Noc_2862 cell cycle protein, FtsW; cell division protein FtsW 502584 8915459 Nhal_0489 Nitrosococcus halophilus Nc4 cell division protein FtsW YP_003526062.1 501421 D 472759 CDS YP_003526063.1 292490624 8915460 502581..503663 1 NC_013960.1 KEGG: noc:Noc_2861 N-acetylglucosaminyltransferase, MurG; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase family 28; glycosyltransferase 28 domain; UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 503663 8915460 Nhal_0490 Nitrosococcus halophilus Nc4 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase YP_003526063.1 502581 D 472759 CDS YP_003526064.1 292490625 8915461 503656..505086 1 NC_013960.1 TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: noc:Noc_2860 UDP-N-acetylmuramate--alanine ligase; UDP-N-acetylmuramate/alanine ligase 505086 8915461 Nhal_0491 Nitrosococcus halophilus Nc4 UDP-N-acetylmuramate/alanine ligase YP_003526064.1 503656 D 472759 CDS YP_003526065.1 292490626 8915462 505086..505982 1 NC_013960.1 KEGG: noc:Noc_2859 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase 505982 8915462 Nhal_0492 Nitrosococcus halophilus Nc4 UDP-N-acetylenolpyruvoylglucosamine reductase YP_003526065.1 505086 D 472759 CDS YP_003526066.1 292490627 8915463 505979..506929 1 NC_013960.1 KEGG: noc:Noc_2858 D-alanine--D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; D-alanine--D-alanine ligase 506929 8915463 Nhal_0493 Nitrosococcus halophilus Nc4 D-alanine--D-alanine ligase YP_003526066.1 505979 D 472759 CDS YP_003526067.1 292490628 8915464 506919..507719 1 NC_013960.1 PFAM: cell division protein FtsQ; polypeptide-transport-associated domain protein FtsQ-type; KEGG: noc:Noc_2857 cell division protein FtsQ; cell division protein FtsQ 507719 8915464 Nhal_0494 Nitrosococcus halophilus Nc4 cell division protein FtsQ YP_003526067.1 506919 D 472759 CDS YP_003526068.1 292490629 8915465 507712..508947 1 NC_013960.1 TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA; KEGG: noc:Noc_2856 cell division protein FtsA; cell division protein FtsA 508947 8915465 Nhal_0495 Nitrosococcus halophilus Nc4 cell division protein FtsA YP_003526068.1 507712 D 472759 CDS YP_003526069.1 292490630 8915466 509012..510169 1 NC_013960.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: noc:Noc_2855 cell division protein FtsZ; cell division protein FtsZ 510169 8915466 Nhal_0496 Nitrosococcus halophilus Nc4 cell division protein FtsZ YP_003526069.1 509012 D 472759 CDS YP_003526070.1 292490631 8915467 510304..511215 1 NC_013960.1 TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; KEGG: noc:Noc_2854 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; UDP-3-0-acyl N-acetylglucosamine deacetylase 511215 8915467 Nhal_0497 Nitrosococcus halophilus Nc4 UDP-3-0-acyl N-acetylglucosamine deacetylase YP_003526070.1 510304 D 472759 CDS YP_003526071.1 292490632 8915468 complement(511253..511783) 1 NC_013960.1 PFAM: protein of unknown function DUF721; KEGG: noc:Noc_2853 hypothetical protein; hypothetical protein 511783 8915468 Nhal_0498 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526071.1 511253 R 472759 CDS YP_003526072.1 292490633 8915469 511820..512683 1 NC_013960.1 PFAM: peptidase M23; KEGG: noc:Noc_2852 peptidase M23B; peptidase M23 512683 8915469 Nhal_0499 Nitrosococcus halophilus Nc4 peptidase M23 YP_003526072.1 511820 D 472759 CDS YP_003526073.1 292490634 8915470 512868..515594 1 NC_013960.1 TIGRFAM: preprotein translocase subunit SecA; PFAM: SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; SEC-C motif domain protein; KEGG: noc:Noc_2851 SecA protein; preprotein translocase subunit SecA 515594 8915470 Nhal_0500 Nitrosococcus halophilus Nc4 preprotein translocase subunit SecA YP_003526073.1 512868 D 472759 CDS YP_003526074.1 292490635 8915471 515710..516060 1 NC_013960.1 KEGG: noc:Noc_0454 hypothetical protein; hypothetical protein 516060 8915471 Nhal_0501 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526074.1 515710 D 472759 CDS YP_003526075.1 292490636 8915472 516117..517334 1 NC_013960.1 KEGG: noc:Noc_2850 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ; arginine biosynthesis bifunctional protein ArgJ 517334 8915472 Nhal_0502 Nitrosococcus halophilus Nc4 arginine biosynthesis bifunctional protein ArgJ YP_003526075.1 516117 D 472759 CDS YP_003526076.1 292490637 8915473 complement(517350..517682) 1 NC_013960.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: noc:Noc_2849 Rieske (2Fe-2S) protein; Rieske (2Fe-2S) domain-containing protein 517682 8915473 Nhal_0503 Nitrosococcus halophilus Nc4 Rieske (2Fe-2S) domain-containing protein YP_003526076.1 517350 R 472759 CDS YP_003526077.1 292490638 8915474 complement(517697..518578) 1 NC_013960.1 PFAM: PfkB domain protein; KEGG: noc:Noc_2848 ketohexokinase; PfkB domain-containing protein 518578 8915474 Nhal_0504 Nitrosococcus halophilus Nc4 PfkB domain-containing protein YP_003526077.1 517697 R 472759 CDS YP_003526078.1 292490639 8915475 complement(518589..519242) 1 NC_013960.1 TIGRFAM: adenylate kinase; PFAM: adenylate kinase; adenylate kinase lid domain protein; KEGG: noc:Noc_2847 adenylate kinase; adenylate kinase 519242 8915475 Nhal_0505 Nitrosococcus halophilus Nc4 adenylate kinase YP_003526078.1 518589 R 472759 CDS YP_003526079.1 292490640 8915476 519509..520774 1 NC_013960.1 PFAM: phosphofructokinase; KEGG: noc:Noc_2846 6-phosphofructokinase; phosphofructokinase 520774 8915476 Nhal_0506 Nitrosococcus halophilus Nc4 phosphofructokinase YP_003526079.1 519509 D 472759 CDS YP_003526080.1 292490641 8915477 complement(520925..521902) 1 NC_013960.1 TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: noc:Noc_2845 peptidase S49, SppA; signal peptide peptidase SppA, 36K type 521902 8915477 Nhal_0507 Nitrosococcus halophilus Nc4 signal peptide peptidase SppA, 36K type YP_003526080.1 520925 R 472759 CDS YP_003526081.1 292490642 8915478 complement(521987..522964) 1 NC_013960.1 KEGG: noc:Noc_2844 pseudouridine synthase, RluD; TIGRFAM: pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; pseudouridine synthase 522964 8915478 Nhal_0508 Nitrosococcus halophilus Nc4 pseudouridine synthase YP_003526081.1 521987 R 472759 CDS YP_003526082.1 292490643 8915479 complement(523038..523865) 1 NC_013960.1 PFAM: extracellular solute-binding protein family 1; KEGG: eba:ebA3597 molybdate or tungstate transport; family 1 extracellular solute-binding protein 523865 8915479 Nhal_0509 Nitrosococcus halophilus Nc4 family 1 extracellular solute-binding protein YP_003526082.1 523038 R 472759 CDS YP_003526083.1 292490644 8915480 complement(523856..524581) 1 NC_013960.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aeh:Mlg_2739 ABC transporter; ABC transporter 524581 8915480 Nhal_0510 Nitrosococcus halophilus Nc4 ABC transporter YP_003526083.1 523856 R 472759 CDS YP_003526084.1 292490645 8915481 complement(524585..525289) 1 NC_013960.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: aeh:Mlg_2740 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transporters inner membrane component 525289 8915481 Nhal_0511 Nitrosococcus halophilus Nc4 binding-protein-dependent transporters inner membrane component YP_003526084.1 524585 R 472759 CDS YP_003526085.1 292490646 8915485 complement(526469..526780) 1 NC_013960.1 KEGG: noc:Noc_1602 hypothetical protein; hypothetical protein 526780 8915485 Nhal_0514 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526085.1 526469 R 472759 CDS YP_003526086.1 292490647 8915487 complement(528320..528802) 1 NC_013960.1 PFAM: FlgN family protein; KEGG: noc:Noc_2685 FlgN; FlgN family protein 528802 8915487 Nhal_0515 Nitrosococcus halophilus Nc4 FlgN family protein YP_003526086.1 528320 R 472759 CDS YP_003526087.1 292490648 8915488 complement(528813..529127) 1 NC_013960.1 PFAM: anti-sigma-28 factor FlgM family protein; KEGG: noc:Noc_2684 anti-sigma-28 factor, FlgM; anti-sigma-28 factor FlgM family protein 529127 8915488 Nhal_0516 Nitrosococcus halophilus Nc4 anti-sigma-28 factor FlgM family protein YP_003526087.1 528813 R 472759 CDS YP_003526088.1 292490649 8915489 complement(529199..529864) 1 NC_013960.1 TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; KEGG: noc:Noc_2683 flageller protein FlgA; flagella basal body P-ring formation protein FlgA 529864 8915489 Nhal_0517 Nitrosococcus halophilus Nc4 flagella basal body P-ring formation protein FlgA YP_003526088.1 529199 R 472759 CDS YP_003526089.1 292490650 8915490 complement(530013..530528) 1 NC_013960.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: tgr:Tgr7_2950 molybdenum cofactor biosynthesis protein C; molybdenum cofactor biosynthesis protein C 530528 8915490 Nhal_0518 Nitrosococcus halophilus Nc4 molybdenum cofactor biosynthesis protein C YP_003526089.1 530013 R 472759 CDS YP_003526090.1 292490651 8915491 530663..530905 1 NC_013960.1 TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: mca:MCA3054 molybdopterin converting factor, subunit 1; molybdopterin converting factor subunit 1 530905 8915491 Nhal_0519 Nitrosococcus halophilus Nc4 molybdopterin converting factor subunit 1 YP_003526090.1 530663 D 472759 CDS YP_003526091.1 292490652 8915492 530902..531339 1 NC_013960.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: tgr:Tgr7_2952 molybdopterin biosynthesis MoaE protein; molybdopterin biosynthesis MoaE protein 531339 8915492 Nhal_0520 Nitrosococcus halophilus Nc4 molybdopterin biosynthesis MoaE protein YP_003526091.1 530902 D 472759 CDS YP_003526092.1 292490653 8915493 531392..534118 1 NC_013960.1 KEGG: noc:Noc_2682 PAS sensor diguanylate cyclase/phophodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; PAS fold domain protein; hypothetical protein; SMART: EAL domain protein; GGDEF domain containing protein; GAF domain protein; PAS domain containing protein; diguanylate cyclase 534118 8915493 Nhal_0521 Nitrosococcus halophilus Nc4 diguanylate cyclase YP_003526092.1 531392 D 472759 CDS YP_003526093.1 292490654 8915494 complement(534139..535032) 1 NC_013960.1 KEGG: noc:Noc_2680 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 535032 8915494 Nhal_0522 Nitrosococcus halophilus Nc4 5,10-methylenetetrahydrofolate reductase YP_003526093.1 534139 R 472759 CDS YP_003526094.1 292490655 8915495 complement(535172..536485) 1 NC_013960.1 KEGG: noc:Noc_2679 S-adenosyl-L-homocysteine hydrolase; TIGRFAM: adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding; adenosylhomocysteinase 536485 8915495 Nhal_0523 Nitrosococcus halophilus Nc4 adenosylhomocysteinase YP_003526094.1 535172 R 472759 CDS YP_003526095.1 292490656 8915496 complement(536566..537783) 1 NC_013960.1 KEGG: noc:Noc_2678 S-adenosylmethionine synthetase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; S-adenosylmethionine synthetase 537783 8915496 Nhal_0524 Nitrosococcus halophilus Nc4 S-adenosylmethionine synthetase YP_003526095.1 536566 R 472759 CDS YP_003526096.1 292490657 8915497 complement(538088..538267) 1 NC_013960.1 PFAM: protein of unknown function DUF343; KEGG: noc:Noc_2677 hypothetical protein; hypothetical protein 538267 8915497 Nhal_0525 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526096.1 538088 R 472759 CDS YP_003526097.1 292490658 8915498 complement(538271..539287) 1 NC_013960.1 KEGG: noc:Noc_2676 tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase 539287 8915498 Nhal_0526 Nitrosococcus halophilus Nc4 tetraacyldisaccharide 4'-kinase YP_003526097.1 538271 R 472759 CDS YP_003526098.1 292490659 8915499 complement(539274..541067) 1 NC_013960.1 KEGG: noc:Noc_2675 lipid A export ATP-binding/permease protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: ATPase AAA; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 541067 8915499 Nhal_0527 Nitrosococcus halophilus Nc4 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA YP_003526098.1 539274 R 472759 CDS YP_003526099.1 292490660 8915500 complement(541084..541506) 1 NC_013960.1 PFAM: biopolymertransporter ExbD/TolR; KEGG: noc:Noc_2674 biopolymer transporter ExbD/TolR; biopolymertransporter ExbD/TolR 541506 8915500 Nhal_0528 Nitrosococcus halophilus Nc4 biopolymertransporter ExbD/TolR YP_003526099.1 541084 R 472759 CDS YP_003526100.1 292490661 8915501 complement(541554..542189) 1 NC_013960.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: noc:Noc_2673 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 542189 8915501 Nhal_0529 Nitrosococcus halophilus Nc4 MotA/TolQ/ExbB proton channel YP_003526100.1 541554 R 472759 CDS YP_003526101.1 292490662 8915502 complement(542306..544678) 1 NC_013960.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase; KEGG: noc:Noc_2672 DNA internalization-related competence protein ComEC/Rec2; DNA internalization-related competence protein ComEC/Rec2 544678 8915502 Nhal_0530 Nitrosococcus halophilus Nc4 DNA internalization-related competence protein ComEC/Rec2 YP_003526101.1 542306 R 472759 CDS YP_003526102.1 292490663 8915503 544748..545293 1 NC_013960.1 KEGG: noc:Noc_2671 hypothetical protein; hypothetical protein 545293 8915503 Nhal_0531 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526102.1 544748 D 472759 CDS YP_003526103.1 292490664 8915504 complement(545307..546008) 1 NC_013960.1 KEGG: noc:Noc_2670 lipoprotein releasing system, ATP-binding protein; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA; lipoprotein releasing system, ATP-binding protein 546008 8915504 Nhal_0532 Nitrosococcus halophilus Nc4 lipoprotein releasing system, ATP-binding protein YP_003526103.1 545307 R 472759 CDS YP_003526104.1 292490665 8915505 complement(546001..547248) 1 NC_013960.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: noc:Noc_2669 LolC/E family lipoprotein releasing system, transmembrane protein; lipoprotein releasing system, transmembrane protein, LolC/E family 547248 8915505 Nhal_0533 Nitrosococcus halophilus Nc4 lipoprotein releasing system, transmembrane protein, LolC/E family YP_003526104.1 546001 R 472759 CDS YP_003526105.1 292490666 8915506 547396..547671 1 NC_013960.1 PFAM: type IV pilus assembly PilZ; KEGG: noc:Noc_2668 hypothetical protein; type IV pilus assembly PilZ 547671 8915506 Nhal_0534 Nitrosococcus halophilus Nc4 type IV pilus assembly PilZ YP_003526105.1 547396 D 472759 CDS YP_003526106.1 292490667 8915507 complement(547700..548362) 1 NC_013960.1 KEGG: noc:Noc_2667 ribose-5-phosphate isomerase A; TIGRFAM: ribose 5-phosphate isomerase; PFAM: ribose 5-phosphate isomerase; ribose 5-phosphate isomerase 548362 8915507 Nhal_0535 Nitrosococcus halophilus Nc4 ribose 5-phosphate isomerase YP_003526106.1 547700 R 472759 CDS YP_003526107.1 292490668 8915508 548463..549992 1 NC_013960.1 TIGRFAM: threonine dehydratase, biosynthetic; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; threonine dehydratase domain protein; KEGG: noc:Noc_2666 threonine dehydratase; threonine dehydratase, biosynthetic 549992 8915508 Nhal_0536 Nitrosococcus halophilus Nc4 threonine dehydratase, biosynthetic YP_003526107.1 548463 D 472759 CDS YP_003526108.1 292490669 8915509 550065..552524 1 NC_013960.1 TIGRFAM: leucyl-tRNA synthetase; KEGG: noc:Noc_2665 leucyl-tRNA synthetase; leucyl-tRNA synthetase 552524 8915509 Nhal_0537 Nitrosococcus halophilus Nc4 leucyl-tRNA synthetase YP_003526108.1 550065 D 472759 CDS YP_003526109.1 292490670 8915510 552544..553053 1 NC_013960.1 PFAM: Rare lipoprotein B; KEGG: noc:Noc_2664 rare lipoprotein B; Rare lipoprotein B 553053 8915510 Nhal_0538 Nitrosococcus halophilus Nc4 Rare lipoprotein B YP_003526109.1 552544 D 472759 CDS YP_003526110.1 292490671 8915511 553050..554105 1 NC_013960.1 KEGG: noc:Noc_2663 DNA polymerase III delta subunit; TIGRFAM: DNA polymerase III subunit delta; PFAM: DNA polymerase III delta; DNA polymerase III subunit delta 554105 8915511 Nhal_0539 Nitrosococcus halophilus Nc4 DNA polymerase III subunit delta YP_003526110.1 553050 D 472759 CDS YP_003526111.1 292490672 8915512 554176..555432 1 NC_013960.1 TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: aldehyde dehydrogenase; KEGG: noc:Noc_2662 gamma-glutamyl phosphate reductase; gamma-glutamyl phosphate reductase 555432 8915512 Nhal_0540 Nitrosococcus halophilus Nc4 gamma-glutamyl phosphate reductase YP_003526111.1 554176 D 472759 CDS YP_003526112.1 292490673 8915513 555439..556140 1 NC_013960.1 KEGG: noc:Noc_2661 nicotinic acid mononucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 556140 8915513 Nhal_0541 Nitrosococcus halophilus Nc4 nicotinate (nicotinamide) nucleotide adenylyltransferase YP_003526112.1 555439 D 472759 CDS YP_003526113.1 292490674 8915514 556140..556490 1 NC_013960.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: noc:Noc_2660 iojap-related protein; iojap-like protein 556490 8915514 Nhal_0542 Nitrosococcus halophilus Nc4 iojap-like protein YP_003526113.1 556140 D 472759 CDS YP_003526114.1 292490675 8915515 556497..556970 1 NC_013960.1 PFAM: protein of unknown function DUF163; KEGG: noc:Noc_2659 hypothetical protein; hypothetical protein 556970 8915515 Nhal_0543 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526114.1 556497 D 472759 CDS YP_003526115.1 292490676 8915516 557079..557687 1 NC_013960.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: noc:Noc_2658 Maf-like protein; maf protein 557687 8915516 Nhal_0544 Nitrosococcus halophilus Nc4 maf protein YP_003526115.1 557079 D 472759 CDS YP_003526116.1 292490677 8915517 557680..559152 1 NC_013960.1 KEGG: noc:Noc_2657 ribonuclease E and G; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; Rne/Rng family ribonuclease 559152 8915517 Nhal_0545 Nitrosococcus halophilus Nc4 Rne/Rng family ribonuclease YP_003526116.1 557680 D 472759 CDS YP_003526117.1 292490678 8915518 559176..563036 1 NC_013960.1 KEGG: noc:Noc_2656 hypothetical protein; hypothetical protein 563036 8915518 Nhal_0546 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526117.1 559176 D 472759 CDS YP_003526118.1 292490679 8915519 563162..563989 1 NC_013960.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: noc:Noc_2655 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 563989 8915519 Nhal_0547 Nitrosococcus halophilus Nc4 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_003526118.1 563162 D 472759 CDS YP_003526119.1 292490680 8915520 564219..565658 1 NC_013960.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: tgr:Tgr7_2267 TldD protein; peptidase U62 modulator of DNA gyrase 565658 8915520 Nhal_0548 Nitrosococcus halophilus Nc4 peptidase U62 modulator of DNA gyrase YP_003526119.1 564219 D 472759 CDS YP_003526120.1 292490681 8915521 565679..566722 1 NC_013960.1 PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: noc:Noc_2654 hypothetical protein; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 566722 8915521 Nhal_0549 Nitrosococcus halophilus Nc4 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_003526120.1 565679 D 472759 CDS YP_003526121.1 292490682 8915522 566777..567013 1 NC_013960.1 PFAM: SirA family protein; KEGG: noc:Noc_2653 SirA-like protein; SirA family protein 567013 8915522 Nhal_0550 Nitrosococcus halophilus Nc4 SirA family protein YP_003526121.1 566777 D 472759 CDS YP_003526122.1 292490683 8915523 567086..568495 1 NC_013960.1 TIGRFAM: glutamine synthetase; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: noc:Noc_2652 glutamine synthetase type I; glutamine synthetase 568495 8915523 Nhal_0551 Nitrosococcus halophilus Nc4 glutamine synthetase YP_003526122.1 567086 D 472759 CDS YP_003526123.1 292490684 8915524 568688..569308 1 NC_013960.1 KEGG: noc:Noc_2650 hypothetical protein; hypothetical protein 569308 8915524 Nhal_0552 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526123.1 568688 D 472759 CDS YP_003526124.1 292490685 8915525 complement(569352..569546) 1 NC_013960.1 KEGG: noc:Noc_2649 hypothetical protein; hypothetical protein 569546 8915525 Nhal_0553 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526124.1 569352 R 472759 CDS YP_003526125.1 292490686 8915526 complement(569756..570571) 1 NC_013960.1 KEGG: noc:Noc_2648 DNA-formamidopyrimidine glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding; formamidopyrimidine-DNA glycosylase 570571 8915526 Nhal_0554 Nitrosococcus halophilus Nc4 formamidopyrimidine-DNA glycosylase YP_003526125.1 569756 R 472759 CDS YP_003526126.1 292490687 8915527 complement(570601..571485) 1 NC_013960.1 KEGG: noc:Noc_2647 hypothetical protein; hypothetical protein 571485 8915527 Nhal_0555 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526126.1 570601 R 472759 CDS YP_003526127.1 292490688 8915528 complement(571498..572886) 1 NC_013960.1 KEGG: noc:Noc_2646 hypothetical protein; hypothetical protein 572886 8915528 Nhal_0556 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526127.1 571498 R 472759 CDS YP_003526128.1 292490689 8915529 complement(572932..573693) 1 NC_013960.1 KEGG: noc:Noc_2645 ABC transporter permease; ABC transporter permease 573693 8915529 Nhal_0557 Nitrosococcus halophilus Nc4 ABC transporter permease YP_003526128.1 572932 R 472759 CDS YP_003526129.1 292490690 8915530 complement(573690..574637) 1 NC_013960.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_2644 ABC transporter ATPase; ABC transporter 574637 8915530 Nhal_0558 Nitrosococcus halophilus Nc4 ABC transporter YP_003526129.1 573690 R 472759 CDS YP_003526130.1 292490691 8915531 complement(574704..575153) 1 NC_013960.1 PFAM: NUDIX hydrolase; KEGG: noc:Noc_2643 NUDIX hydrolase; NUDIX hydrolase 575153 8915531 Nhal_0559 Nitrosococcus halophilus Nc4 NUDIX hydrolase YP_003526130.1 574704 R 472759 CDS YP_003526131.1 292490692 8915532 575303..576472 1 NC_013960.1 PFAM: fatty acid desaturase; KEGG: noc:Noc_2775 fatty acid desaturase; fatty acid desaturase 576472 8915532 Nhal_0560 Nitrosococcus halophilus Nc4 fatty acid desaturase YP_003526131.1 575303 D 472759 CDS YP_003526132.1 292490693 8915533 complement(576559..576714) 1 NC_013960.1 TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: noc:Noc_2641 ribosomal protein L33; 50S ribosomal protein L33 576714 8915533 Nhal_0561 Nitrosococcus halophilus Nc4 50S ribosomal protein L33 YP_003526132.1 576559 R 472759 CDS YP_003526133.1 292490694 8915534 complement(576727..576963) 1 NC_013960.1 TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: noc:Noc_2640 ribosomal protein L28; 50S ribosomal protein L28 576963 8915534 Nhal_0562 Nitrosococcus halophilus Nc4 50S ribosomal protein L28 YP_003526133.1 576727 R 472759 CDS YP_003526134.1 292490695 8915535 complement(577077..577937) 1 NC_013960.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: noc:Noc_2639 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 577937 8915535 Nhal_0563 Nitrosococcus halophilus Nc4 endonuclease/exonuclease/phosphatase YP_003526134.1 577077 R 472759 CDS YP_003526135.1 292490696 8915536 complement(577973..578983) 1 NC_013960.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: noc:Noc_2638 UDP-glucuronate 5'-epimerase; NAD-dependent epimerase/dehydratase 578983 8915536 Nhal_0564 Nitrosococcus halophilus Nc4 NAD-dependent epimerase/dehydratase YP_003526135.1 577973 R 472759 CDS YP_003526136.1 292490697 8915537 complement(579022..580299) 1 NC_013960.1 TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: noc:Noc_2637 UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 580299 8915537 Nhal_0565 Nitrosococcus halophilus Nc4 nucleotide sugar dehydrogenase YP_003526136.1 579022 R 472759 CDS YP_003526137.1 292490698 8915538 complement(580393..581844) 1 NC_013960.1 KEGG: noc:Noc_2636 aspartyl/glutamyl-tRNA amidotransferase subunit A; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: amidase; glutamyl-tRNA(Gln) amidotransferase subunit alpha 581844 8915538 Nhal_0566 Nitrosococcus halophilus Nc4 glutamyl-tRNA(Gln) amidotransferase subunit alpha YP_003526137.1 580393 R 472759 CDS YP_003526138.1 292490699 8915539 complement(581873..582160) 1 NC_013960.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: noc:Noc_2635 glutamyl-tRNA(Gln) amidotransferase C subunit; glutamyl-tRNA(Gln) amidotransferase subunit C 582160 8915539 Nhal_0567 Nitrosococcus halophilus Nc4 glutamyl-tRNA(Gln) amidotransferase subunit C YP_003526138.1 581873 R 472759 CDS YP_003526139.1 292490700 8915540 582274..583323 1 NC_013960.1 TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: tgr:Tgr7_0514 rod shape-determining protein MreB; MreB/Mrl family cell shape determining protein 583323 8915540 Nhal_0568 Nitrosococcus halophilus Nc4 MreB/Mrl family cell shape determining protein YP_003526139.1 582274 D 472759 CDS YP_003526140.1 292490701 8915541 583401..584327 1 NC_013960.1 TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: pfl:PFL_0897 rod shape-determining protein MreC; rod shape-determining protein MreC 584327 8915541 Nhal_0569 Nitrosococcus halophilus Nc4 rod shape-determining protein MreC YP_003526140.1 583401 D 472759 CDS YP_003526141.1 292490702 8915542 584314..584808 1 NC_013960.1 TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD; KEGG: tgr:Tgr7_0512 rod shape-determining protein MreD; rod shape-determining protein MreD 584808 8915542 Nhal_0570 Nitrosococcus halophilus Nc4 rod shape-determining protein MreD YP_003526141.1 584314 D 472759 CDS YP_003526142.1 292490703 8915543 584821..586662 1 NC_013960.1 KEGG: mca:MCA0103 penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 586662 8915543 Nhal_0571 Nitrosococcus halophilus Nc4 penicillin-binding protein 2 YP_003526142.1 584821 D 472759 CDS YP_003526143.1 292490704 8915544 586671..587810 1 NC_013960.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: tgr:Tgr7_2710 rod shape-determining protein RodA; rod shape-determining protein RodA 587810 8915544 Nhal_0572 Nitrosococcus halophilus Nc4 rod shape-determining protein RodA YP_003526143.1 586671 D 472759 CDS YP_003526144.1 292490705 8915545 587831..588826 1 NC_013960.1 TIGRFAM: lytic murein transglycosylase B; KEGG: noc:Noc_2634 lytic murein transglycosylase B; lytic murein transglycosylase B 588826 8915545 Nhal_0573 Nitrosococcus halophilus Nc4 lytic murein transglycosylase B YP_003526144.1 587831 D 472759 CDS YP_003526145.1 292490706 8915546 588823..589602 1 NC_013960.1 TIGRFAM: lipoprotein A; PFAM: Rare lipoprotein A; sporulation domain protein; KEGG: noc:Noc_2633 lipoprotein A; lipoprotein A 589602 8915546 Nhal_0574 Nitrosococcus halophilus Nc4 lipoprotein A YP_003526145.1 588823 D 472759 CDS YP_003526146.1 292490707 8915547 589690..590838 1 NC_013960.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: noc:Noc_2632 serine-type D-Ala-D-Ala carboxypeptidase; beta-lactamase 590838 8915547 Nhal_0575 Nitrosococcus halophilus Nc4 beta-lactamase YP_003526146.1 589690 D 472759 CDS YP_003526147.1 292490708 8915548 590846..591709 1 NC_013960.1 PFAM: aminotransferase class IV; KEGG: noc:Noc_2631 D-alanine transaminase; class IV aminotransferase 591709 8915548 Nhal_0576 Nitrosococcus halophilus Nc4 class IV aminotransferase YP_003526147.1 590846 D 472759 CDS YP_003526148.1 292490709 8915549 591738..592370 1 NC_013960.1 KEGG: noc:Noc_2630 lipoate-protein ligase B; TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; lipoate-protein ligase B 592370 8915549 Nhal_0577 Nitrosococcus halophilus Nc4 lipoate-protein ligase B YP_003526148.1 591738 D 472759 CDS YP_003526149.1 292490710 8915550 592450..592674 1 NC_013960.1 hypothetical protein 592674 8915550 Nhal_0578 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526149.1 592450 D 472759 CDS YP_003526150.1 292490711 8915551 592671..593651 1 NC_013960.1 KEGG: noc:Noc_2629 lipoyl synthase; TIGRFAM: lipoic acid synthetase; PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; lipoic acid synthetase 593651 8915551 Nhal_0579 Nitrosococcus halophilus Nc4 lipoic acid synthetase YP_003526150.1 592671 D 472759 CDS YP_003526151.1 292490712 8915552 593836..594996 1 NC_013960.1 KEGG: noc:Noc_2628 methylcitrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: citrate synthase; 2-methylcitrate synthase/citrate synthase II 594996 8915552 Nhal_0580 Nitrosococcus halophilus Nc4 2-methylcitrate synthase/citrate synthase II YP_003526151.1 593836 D 472759 CDS YP_003526152.1 292490713 8915553 complement(595050..596060) 1 NC_013960.1 KEGG: noc:Noc_2627 hypothetical protein; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: radical SAM protein; lysine 2,3-aminomutase YodO family protein 596060 8915553 Nhal_0581 Nitrosococcus halophilus Nc4 lysine 2,3-aminomutase YodO family protein YP_003526152.1 595050 R 472759 CDS YP_003526153.1 292490714 8915554 596120..596689 1 NC_013960.1 TIGRFAM: translation elongation factor P; PFAM: Elongation factor P ; Elongation factor P/YeiP protein; Elongation factor KOW domain protein; KEGG: noc:Noc_2626 elongation factor P; translation elongation factor P 596689 8915554 Nhal_0582 Nitrosococcus halophilus Nc4 translation elongation factor P YP_003526153.1 596120 D 472759 CDS YP_003526154.1 292490715 8915555 596736..597731 1 NC_013960.1 TIGRFAM: lysyl-tRNA synthetase-related protein GenX; PFAM: tRNA synthetase class II (D K and N); KEGG: noc:Noc_2625 lysyl-tRNA synthetase-related protein; lysyl-tRNA synthetase-like protein GenX 597731 8915555 Nhal_0583 Nitrosococcus halophilus Nc4 lysyl-tRNA synthetase-like protein GenX YP_003526154.1 596736 D 472759 CDS YP_003526155.1 292490716 8915556 complement(597838..599166) 1 NC_013960.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit; KEGG: noc:Noc_0709 TRAP dicarboxylate transporter DctM subunit; TRAP dicarboxylate transporter subunit DctM 599166 8915556 Nhal_0584 Nitrosococcus halophilus Nc4 TRAP dicarboxylate transporter subunit DctM YP_003526155.1 597838 R 472759 CDS YP_003526156.1 292490717 8915557 complement(599166..599705) 1 NC_013960.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: noc:Noc_0710 tripartite ATP-independent periplasmic transporter DctQ; tripartite ATP-independent periplasmic transporter DctQ component 599705 8915557 Nhal_0585 Nitrosococcus halophilus Nc4 tripartite ATP-independent periplasmic transporter DctQ component YP_003526156.1 599166 R 472759 CDS YP_003526157.1 292490718 8915558 complement(599712..600176) 1 NC_013960.1 TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: noc:Noc_0711 D-tyrosyl-tRNA deacylase; D-tyrosyl-tRNA(Tyr) deacylase 600176 8915558 Nhal_0586 Nitrosococcus halophilus Nc4 D-tyrosyl-tRNA(Tyr) deacylase YP_003526157.1 599712 R 472759 CDS YP_003526158.1 292490719 8915559 complement(600186..601130) 1 NC_013960.1 KEGG: noc:Noc_0712 peptidase S33, proline iminopeptidase 1; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; proline iminopeptidase 601130 8915559 Nhal_0587 Nitrosococcus halophilus Nc4 proline iminopeptidase YP_003526158.1 600186 R 472759 CDS YP_003526159.1 292490720 8915560 601192..602361 1 NC_013960.1 KEGG: noc:Noc_0713 succinyl-CoA synthetase, beta subunit; TIGRFAM: succinyl-CoA synthetase subunit beta; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase; succinyl-CoA synthetase subunit beta 602361 8915560 Nhal_0588 Nitrosococcus halophilus Nc4 succinyl-CoA synthetase subunit beta YP_003526159.1 601192 D 472759 CDS YP_003526160.1 292490721 8915561 602358..603239 1 NC_013960.1 TIGRFAM: succinyl-CoA synthetase, subunit alpha; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding protein; KEGG: noc:Noc_0714 succinyl-CoA ligase, subunit alpha; succinyl-CoA synthetase subunit alpha 603239 8915561 Nhal_0589 Nitrosococcus halophilus Nc4 succinyl-CoA synthetase subunit alpha YP_003526160.1 602358 D 472759 CDS YP_003526161.1 292490722 8915562 603369..603707 1 NC_013960.1 PFAM: nitrogen regulatory protein P-II; KEGG: noc:Noc_0715 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 603707 8915562 Nhal_0590 Nitrosococcus halophilus Nc4 nitrogen regulatory protein P-II YP_003526161.1 603369 D 472759 CDS YP_003526162.1 292490723 8915563 complement(603809..604591) 1 NC_013960.1 TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: noc:Noc_0716 transmembrane protein; outer membrane assembly lipoprotein YfiO 604591 8915563 Nhal_0591 Nitrosococcus halophilus Nc4 outer membrane assembly lipoprotein YfiO YP_003526162.1 603809 R 472759 CDS YP_003526163.1 292490724 8915564 604686..605654 1 NC_013960.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: noc:Noc_0717 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 605654 8915564 Nhal_0592 Nitrosococcus halophilus Nc4 ErfK/YbiS/YcfS/YnhG family protein YP_003526163.1 604686 D 472759 CDS YP_003526164.1 292490725 8915565 complement(605728..606039) 1 NC_013960.1 KEGG: noc:Noc_0718 lipoprotein; lipoprotein 606039 8915565 Nhal_0593 Nitrosococcus halophilus Nc4 lipoprotein YP_003526164.1 605728 R 472759 CDS YP_003526165.1 292490726 8915566 606619..607416 1 NC_013960.1 PFAM: inositol monophosphatase; KEGG: noc:Noc_0719 inositol-1(or 4)-monophosphatase; inositol monophosphatase 607416 8915566 Nhal_0594 Nitrosococcus halophilus Nc4 inositol monophosphatase YP_003526165.1 606619 D 472759 CDS YP_003526166.1 292490727 8915567 607738..609567 1 NC_013960.1 TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: noc:Noc_0720 GTP-binding protein TypA; GTP-binding protein TypA 609567 8915567 Nhal_0595 Nitrosococcus halophilus Nc4 GTP-binding protein TypA YP_003526166.1 607738 D 472759 CDS YP_003526167.1 292490728 8915568 609572..609799 1 NC_013960.1 KEGG: noc:Noc_0721 hypothetical protein; hypothetical protein 609799 8915568 Nhal_0596 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526167.1 609572 D 472759 CDS YP_003526168.1 292490729 8915569 609744..611411 1 NC_013960.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: noc:Noc_0722 signal transduction histidine kinase; ATP-binding region ATPase domain-containing protein 611411 8915569 Nhal_0597 Nitrosococcus halophilus Nc4 ATP-binding region ATPase domain-containing protein YP_003526168.1 609744 D 472759 CDS YP_003526169.1 292490730 8915570 611408..612742 1 NC_013960.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; ATPase AAA; KEGG: noc:Noc_0723 two component, sigma-54 specific, fis family transcriptional regulator; Fis family transcriptional regulator 612742 8915570 Nhal_0598 Nitrosococcus halophilus Nc4 Fis family transcriptional regulator YP_003526169.1 611408 D 472759 CDS YP_003526170.1 292490731 8915571 612887..613300 1 NC_013960.1 PFAM: transposase IS3/IS911 family protein; KEGG: rms:RMA_0745 transposase; transposase IS3/IS911 family protein 613300 8915571 Nhal_0599 Nitrosococcus halophilus Nc4 transposase IS3/IS911 family protein YP_003526170.1 612887 D 472759 CDS YP_003526171.1 292490732 8915572 613365..613523 1 NC_013960.1 KEGG: tgr:Tgr7_0628 addiction module toxin, RelE/StbE family; hypothetical protein 613523 8915572 Nhal_0600 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526171.1 613365 D 472759 CDS YP_003526172.1 292490733 8915573 613570..614133 1 NC_013960.1 PFAM: protein of unknown function DUF820; KEGG: noc:Noc_0762 hypothetical protein; hypothetical protein 614133 8915573 Nhal_0601 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526172.1 613570 D 472759 CDS YP_003526173.1 292490734 8915574 614319..614648 1 NC_013960.1 KEGG: bvi:Bcep1808_4515 hypothetical protein; hypothetical protein 614648 8915574 Nhal_0602 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526173.1 614319 D 472759 CDS YP_003526174.1 292490735 8915575 614721..615164 1 NC_013960.1 KEGG: bvi:Bcep1808_4514 hypothetical protein; hypothetical protein 615164 8915575 Nhal_0603 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526174.1 614721 D 472759 CDS YP_003526175.1 292490736 8915576 615201..615467 1 NC_013960.1 TIGRFAM: AbrB family transcriptional regulator; PFAM: SpoVT/AbrB domain protein; KEGG: noc:Noc_2545 AbrB family transcriptional regulator; AbrB family transcriptional regulator 615467 8915576 Nhal_0604 Nitrosococcus halophilus Nc4 AbrB family transcriptional regulator YP_003526175.1 615201 D 472759 CDS YP_003526176.1 292490737 8915577 615536..615703 1 NC_013960.1 KEGG: noc:Noc_2544 PilT protein-like; PilT protein-like protein 615703 8915577 Nhal_0605 Nitrosococcus halophilus Nc4 PilT protein-like protein YP_003526176.1 615536 D 472759 CDS YP_003526177.1 292490738 8915578 complement(615715..616098) 1 NC_013960.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: noc:Noc_2542 XRE family transcriptional regulator; hypothetical protein 616098 8915578 Nhal_0606 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526177.1 615715 R 472759 CDS YP_003526178.1 292490739 8915579 complement(616095..616352) 1 NC_013960.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: bgl:bglu_1g12000 hypothetical protein; RelE/StbE family addiction module toxin 616352 8915579 Nhal_0607 Nitrosococcus halophilus Nc4 RelE/StbE family addiction module toxin YP_003526178.1 616095 R 472759 CDS YP_003526179.1 292490740 8915580 616719..617210 1 NC_013960.1 PFAM: fimbrial protein pilin; KEGG: tgr:Tgr7_0797 pilin; fimbrial protein pilin 617210 8915580 Nhal_0608 Nitrosococcus halophilus Nc4 fimbrial protein pilin YP_003526179.1 616719 D 472759 CDS YP_003526180.1 292490741 8915581 617321..619285 1 NC_013960.1 KEGG: tgr:Tgr7_0796 hypothetical protein; hypothetical protein 619285 8915581 Nhal_0609 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526180.1 617321 D 472759 CDS YP_003526181.1 292490742 8915582 619444..620310 1 NC_013960.1 PFAM: glycosyl transferase family 2; KEGG: tgr:Tgr7_0794 glycosyl transferase family 2; family 2 glycosyl transferase 620310 8915582 Nhal_0610 Nitrosococcus halophilus Nc4 family 2 glycosyl transferase YP_003526181.1 619444 D 472759 CDS YP_003526182.1 292490743 8915583 620322..621587 1 NC_013960.1 PFAM: glycosyl transferase group 1; KEGG: tgr:Tgr7_0793 glycosyltransferase; group 1 glycosyl transferase 621587 8915583 Nhal_0611 Nitrosococcus halophilus Nc4 group 1 glycosyl transferase YP_003526182.1 620322 D 472759 CDS YP_003526183.1 292490744 8915584 complement(622427..623551) 1 NC_013960.1 PFAM: glycosyl transferase group 1; KEGG: smt:Smal_3173 glycosyl transferase group 1; group 1 glycosyl transferase 623551 8915584 Nhal_0612 Nitrosococcus halophilus Nc4 group 1 glycosyl transferase YP_003526183.1 622427 R 472759 CDS YP_003526184.1 292490745 8915586 complement(623736..624836) 1 NC_013960.1 KEGG: bpy:Bphyt_0851 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like; UDP-galactopyranose mutase 624836 8915586 Nhal_0614 Nitrosococcus halophilus Nc4 UDP-galactopyranose mutase YP_003526184.1 623736 R 472759 CDS YP_003526185.1 292490746 8915587 complement(624861..625901) 1 NC_013960.1 PFAM: glycosyl transferase family 2; KEGG: gur:Gura_1682 glycosyl transferase; family 2 glycosyl transferase 625901 8915587 Nhal_0615 Nitrosococcus halophilus Nc4 family 2 glycosyl transferase YP_003526185.1 624861 R 472759 CDS YP_003526186.1 292490747 8915588 complement(625898..626965) 1 NC_013960.1 PFAM: glycosyl transferase family 2; KEGG: mca:MCA0622 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 626965 8915588 Nhal_0616 Nitrosococcus halophilus Nc4 family 2 glycosyl transferase YP_003526186.1 625898 R 472759 CDS YP_003526187.1 292490748 8915589 complement(626965..627891) 1 NC_013960.1 KEGG: afr:AFE_1817 sulfotransferase domain protein; hypothetical protein 627891 8915589 Nhal_0617 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526187.1 626965 R 472759 CDS YP_003526188.1 292490749 8915590 complement(627982..628911) 1 NC_013960.1 KEGG: afr:AFE_1817 sulfotransferase domain protein; hypothetical protein 628911 8915590 Nhal_0618 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526188.1 627982 R 472759 CDS YP_003526189.1 292490750 8915591 complement(628902..630206) 1 NC_013960.1 PFAM: polysaccharide biosynthesis protein; multi antimicrobial extrusion protein MatE; KEGG: abo:ABO_0915 polysaccharide export protein, translocase; polysaccharide biosynthesis protein 630206 8915591 Nhal_0619 Nitrosococcus halophilus Nc4 polysaccharide biosynthesis protein YP_003526189.1 628902 R 472759 CDS YP_003526190.1 292490751 8915593 complement(631007..631276) 1 NC_013960.1 TIGRFAM: AbrB family transcriptional regulator; PFAM: SpoVT/AbrB domain protein; KEGG: noc:Noc_2538 AbrB family transcriptional regulator; AbrB family transcriptional regulator 631276 8915593 Nhal_0621 Nitrosococcus halophilus Nc4 AbrB family transcriptional regulator YP_003526190.1 631007 R 472759 CDS YP_003526191.1 292490752 8915594 631585..631812 1 NC_013960.1 hypothetical protein 631812 8915594 Nhal_0622 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526191.1 631585 D 472759 CDS YP_003526192.1 292490753 8915595 631813..632022 1 NC_013960.1 hypothetical protein 632022 8915595 Nhal_0623 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526192.1 631813 D 472759 CDS YP_003526193.1 292490754 8915596 complement(632473..632871) 1 NC_013960.1 PFAM: protein of unknown function UPF0150; CopG domain protein DNA-binding domain protein; KEGG: noc:Noc_2537 hypothetical protein; hypothetical protein 632871 8915596 Nhal_0624 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526193.1 632473 R 472759 CDS YP_003526194.1 292490755 8915597 complement(632875..633063) 1 NC_013960.1 PFAM: YcfA family protein; KEGG: sme:SMc04441 hypothetical protein; YcfA family protein 633063 8915597 Nhal_0625 Nitrosococcus halophilus Nc4 YcfA family protein YP_003526194.1 632875 R 472759 CDS YP_003526195.1 292490756 8915598 complement(633191..633616) 1 NC_013960.1 TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: nucleotidyltransferase substrate binding protein HI0074; KEGG: noc:Noc_2536 nucleotidyltransferase substrate-binding protein; nucleotidyltransferase substrate binding protein 633616 8915598 Nhal_0626 Nitrosococcus halophilus Nc4 nucleotidyltransferase substrate binding protein YP_003526195.1 633191 R 472759 CDS YP_003526196.1 292490757 8915599 complement(633604..633918) 1 NC_013960.1 PFAM: DNA polymerase beta domain protein region; KEGG: noc:Noc_2535 DNA polymerase, beta-like region; DNA polymerase beta domain-containing protein 633918 8915599 Nhal_0627 Nitrosococcus halophilus Nc4 DNA polymerase beta domain-containing protein YP_003526196.1 633604 R 472759 CDS YP_003526197.1 292490758 8915600 634089..634703 1 NC_013960.1 PFAM: MerR family transcriptional regulator; Resolvase domain; KEGG: xfm:Xfasm12_1564 hypothetical protein; MerR family transcriptional regulator 634703 8915600 Nhal_0628 Nitrosococcus halophilus Nc4 MerR family transcriptional regulator YP_003526197.1 634089 D 472759 CDS YP_003526198.1 292490759 8915601 634681..635835 1 NC_013960.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0401 transposase; transposase, IS605 OrfB family 635835 8915601 Nhal_0629 Nitrosococcus halophilus Nc4 transposase, IS605 OrfB family YP_003526198.1 634681 D 472759 CDS YP_003526199.1 292490760 8915602 635887..635979 1 NC_013960.1 hypothetical protein 635979 8915602 Nhal_0630 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526199.1 635887 D 472759 CDS YP_003526200.1 292490761 8915603 636013..636324 1 NC_013960.1 PFAM: DNA polymerase beta domain protein region; KEGG: tgr:Tgr7_1984 DNA polymerase subunit beta; DNA polymerase beta domain-containing protein 636324 8915603 Nhal_0631 Nitrosococcus halophilus Nc4 DNA polymerase beta domain-containing protein YP_003526200.1 636013 D 472759 CDS YP_003526201.1 292490762 8915605 complement(636557..637780) 1 NC_013960.1 PFAM: transposase mutator type; KEGG: son:SO_0708 transposase mutator family protein; transposase mutator type 637780 8915605 Nhal_0633 Nitrosococcus halophilus Nc4 transposase mutator type YP_003526201.1 636557 R 472759 CDS YP_003526202.1 292490763 8915607 638930..639178 1 NC_013960.1 TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: avi:Avi_2643 hypothetical protein; addiction module antidote protein 639178 8915607 Nhal_0635 Nitrosococcus halophilus Nc4 addiction module antidote protein YP_003526202.1 638930 D 472759 CDS YP_003526203.1 292490764 8915608 639178..639474 1 NC_013960.1 PFAM: plasmid stabilization system; KEGG: nmu:Nmul_B2801 plasmid stabilization system protein; plasmid stabilization system 639474 8915608 Nhal_0636 Nitrosococcus halophilus Nc4 plasmid stabilization system YP_003526203.1 639178 D 472759 CDS YP_003526204.1 292490765 8915609 complement(639495..639716) 1 NC_013960.1 hypothetical protein 639716 8915609 Nhal_0637 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526204.1 639495 R 472759 CDS YP_003526205.1 292490766 8915610 639992..640420 1 NC_013960.1 KEGG: noc:Noc_2534 hypothetical protein; hypothetical protein 640420 8915610 Nhal_0638 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526205.1 639992 D 472759 CDS YP_003526206.1 292490767 8915611 640861..641157 1 NC_013960.1 PFAM: propeptide PepSY amd peptidase M4; KEGG: mpt:Mpe_A1138 hypothetical protein; propeptide PepSY amd peptidase M4 641157 8915611 Nhal_0639 Nitrosococcus halophilus Nc4 propeptide PepSY amd peptidase M4 YP_003526206.1 640861 D 472759 CDS YP_003526207.1 292490768 8915612 complement(641215..642564) 1 NC_013960.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: noc:Noc_2533 multi anti extrusion protein MatE; MATE efflux family protein 642564 8915612 Nhal_0640 Nitrosococcus halophilus Nc4 MATE efflux family protein YP_003526207.1 641215 R 472759 CDS YP_003526208.1 292490769 8915613 complement(642703..643608) 1 NC_013960.1 PFAM: OmpA/MotB domain protein; Thrombospondin type 3 repeat; KEGG: noc:Noc_2532 OmpA/MotB; OmpA/MotB domain-containing protein 643608 8915613 Nhal_0641 Nitrosococcus halophilus Nc4 OmpA/MotB domain-containing protein YP_003526208.1 642703 R 472759 CDS YP_003526209.1 292490770 8915614 complement(643966..644349) 1 NC_013960.1 KEGG: noc:Noc_2531 hypothetical protein; hypothetical protein 644349 8915614 Nhal_0642 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526209.1 643966 R 472759 CDS YP_003526210.1 292490771 8915615 complement(644532..646403) 1 NC_013960.1 KEGG: noc:Noc_2530 hypothetical protein; hypothetical protein 646403 8915615 Nhal_0643 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526210.1 644532 R 472759 CDS YP_003526211.1 292490772 8915616 646587..646961 1 NC_013960.1 KEGG: noc:Noc_2529 hypothetical protein; hypothetical protein 646961 8915616 Nhal_0644 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526211.1 646587 D 472759 CDS YP_003526212.1 292490773 8915617 complement(647426..648067) 1 NC_013960.1 PFAM: MT-A70 family protein; KEGG: mpo:Mpop_2710 MT-A70 family protein; MT-A70 family protein 648067 8915617 Nhal_0645 Nitrosococcus halophilus Nc4 MT-A70 family protein YP_003526212.1 647426 R 472759 CDS YP_003526213.1 292490774 8915618 complement(648151..649398) 1 NC_013960.1 PFAM: ribonucleotide reductase; KEGG: noc:Noc_2528 ribonucleotide-diphosphate reductase subunit beta; ribonucleoside-diphosphate reductase 649398 8915618 Nhal_0646 Nitrosococcus halophilus Nc4 ribonucleoside-diphosphate reductase YP_003526213.1 648151 R 472759 CDS YP_003526214.1 292490775 8915619 complement(649482..654569) 1 NC_013960.1 KEGG: noc:Noc_2527 ribonucleoside-diphosphate reductase; PFAM: ribonucleotide reductase large subunit; ATP-cone domain protein; ribonucleotide reductase large subunit domain protein; SMART: Hedgehog/intein hint domain protein; ribonucleoside-diphosphate reductase 654569 8915619 Nhal_0647 Nitrosococcus halophilus Nc4 ribonucleoside-diphosphate reductase YP_003526214.1 649482 R 472759 CDS YP_003526215.1 292490776 8915620 654687..654863 1 NC_013960.1 hypothetical protein 654863 8915620 Nhal_0648 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526215.1 654687 D 472759 CDS YP_003526216.1 292490777 8915621 complement(654949..655416) 1 NC_013960.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: noc:Noc_2526 alkyl hydroperoxide reductase/thiol specific antioxidant; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 655416 8915621 Nhal_0649 Nitrosococcus halophilus Nc4 alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen YP_003526216.1 654949 R 472759 CDS YP_003526217.1 292490778 8915622 complement(655436..655990) 1 NC_013960.1 KEGG: noc:Noc_2525 glycine cleavage system transcriptional repressor; glycine cleavage system transcriptional repressor 655990 8915622 Nhal_0650 Nitrosococcus halophilus Nc4 glycine cleavage system transcriptional repressor YP_003526217.1 655436 R 472759 CDS YP_003526218.1 292490779 8915623 656140..657018 1 NC_013960.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: noc:Noc_2524 dihydrodipicolinate synthase subfamily protein; dihydrodipicolinate synthase 657018 8915623 Nhal_0651 Nitrosococcus halophilus Nc4 dihydrodipicolinate synthase YP_003526218.1 656140 D 472759 CDS YP_003526219.1 292490780 8915624 657037..658053 1 NC_013960.1 KEGG: noc:Noc_2523 NlpB/DapX lipoprotein; NlpB/DapX lipoprotein 658053 8915624 Nhal_0652 Nitrosococcus halophilus Nc4 NlpB/DapX lipoprotein YP_003526219.1 657037 D 472759 CDS YP_003526220.1 292490781 8915625 658066..658782 1 NC_013960.1 KEGG: noc:Noc_2522 phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazole-succinocarboxamide synthase 658782 8915625 Nhal_0653 Nitrosococcus halophilus Nc4 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_003526220.1 658066 D 472759 CDS YP_003526221.1 292490782 8915626 complement(658829..659860) 1 NC_013960.1 KEGG: noc:Noc_2521 dihydroorotase; TIGRFAM: dihydroorotase, homodimeric type; PFAM: amidohydrolase; dihydroorotase, homodimeric type 659860 8915626 Nhal_0654 Nitrosococcus halophilus Nc4 dihydroorotase, homodimeric type YP_003526221.1 658829 R 472759 CDS YP_003526222.1 292490783 8915627 660230..661978 1 NC_013960.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; KEGG: noc:Noc_2520 acetolactate synthase large subunit biosynthetic type; acetolactate synthase, large subunit, biosynthetic type 661978 8915627 Nhal_0655 Nitrosococcus halophilus Nc4 acetolactate synthase, large subunit, biosynthetic type YP_003526222.1 660230 D 472759 CDS YP_003526223.1 292490784 8915628 661980..662474 1 NC_013960.1 KEGG: noc:Noc_2519 acetolactate synthase small subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; acetolactate synthase, small subunit 662474 8915628 Nhal_0656 Nitrosococcus halophilus Nc4 acetolactate synthase, small subunit YP_003526223.1 661980 D 472759 CDS YP_003526224.1 292490785 8915629 662774..663790 1 NC_013960.1 KEGG: noc:Noc_2518 ketol-acid reductoisomerase; TIGRFAM: ketol-acid reductoisomerase; PFAM: acetohydroxy acid isomeroreductase catalytic domain protein; CoA-binding protein; acetohydroxy acid isomeroreductase; ketol-acid reductoisomerase 663790 8915629 Nhal_0657 Nitrosococcus halophilus Nc4 ketol-acid reductoisomerase YP_003526224.1 662774 D 472759 CDS YP_003526225.1 292490786 8915630 663796..664599 1 NC_013960.1 TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: noc:Noc_2517 CDP-diacylglycerol--serine O-phosphatidyltransferase; CDP-diacylglycerol/serine O-phosphatidyltransferase 664599 8915630 Nhal_0658 Nitrosococcus halophilus Nc4 CDP-diacylglycerol/serine O-phosphatidyltransferase YP_003526225.1 663796 D 472759 CDS YP_003526226.1 292490787 8915631 664858..666393 1 NC_013960.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: noc:Noc_2516 2-isopropylmalate synthase; 2-isopropylmalate synthase 666393 8915631 Nhal_0659 Nitrosococcus halophilus Nc4 2-isopropylmalate synthase YP_003526226.1 664858 D 472759 CDS YP_003526227.1 292490788 8915632 666401..667096 1 NC_013960.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: uracil-DNA glycosylase superfamily; KEGG: noc:Noc_2515 phage SPO1 DNA polymerase-related protein; phage SPO1 DNA polymerase-like protein 667096 8915632 Nhal_0660 Nitrosococcus halophilus Nc4 phage SPO1 DNA polymerase-like protein YP_003526227.1 666401 D 472759 CDS YP_003526228.1 292490789 8915633 667141..667626 1 NC_013960.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: noc:Noc_2514 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase 667626 8915633 Nhal_0661 Nitrosococcus halophilus Nc4 ribosomal-protein-alanine acetyltransferase YP_003526228.1 667141 D 472759 CDS YP_003526229.1 292490790 8915634 667664..668938 1 NC_013960.1 KEGG: noc:Noc_2513 membrane protein; membrane protein 668938 8915634 Nhal_0662 Nitrosococcus halophilus Nc4 membrane protein YP_003526229.1 667664 D 472759 CDS YP_003526230.1 292490791 8915635 complement(668924..669448) 1 NC_013960.1 PFAM: NUDIX hydrolase; KEGG: noc:Noc_2512 NUDIX hydrolase; NUDIX hydrolase 669448 8915635 Nhal_0663 Nitrosococcus halophilus Nc4 NUDIX hydrolase YP_003526230.1 668924 R 472759 CDS YP_003526231.1 292490792 8915636 669556..670377 1 NC_013960.1 PFAM: protein of unknown function DUF81; KEGG: noc:Noc_2511 hypothetical protein; hypothetical protein 670377 8915636 Nhal_0664 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526231.1 669556 D 472759 CDS YP_003526232.1 292490793 8915637 complement(670324..671412) 1 NC_013960.1 PFAM: glycosyl transferase group 1; KEGG: mca:MCA2241 glycosyl transferase; group 1 glycosyl transferase 671412 8915637 Nhal_0665 Nitrosococcus halophilus Nc4 group 1 glycosyl transferase YP_003526232.1 670324 R 472759 CDS YP_003526233.1 292490794 8915638 671766..672041 1 NC_013960.1 hypothetical protein 672041 8915638 Nhal_0666 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526233.1 671766 D 472759 CDS YP_003526234.1 292490795 8915639 672069..674000 1 NC_013960.1 PFAM: PrkA AAA domain protein; PrkA serine kinase; SMART: PrkA AAA domain protein; KEGG: noc:Noc_2509 PrkA serine kinase; PrkA AAA domain-containing protein 674000 8915639 Nhal_0667 Nitrosococcus halophilus Nc4 PrkA AAA domain-containing protein YP_003526234.1 672069 D 472759 CDS YP_003526235.1 292490796 8915640 674064..675245 1 NC_013960.1 PFAM: protein of unknown function DUF444; KEGG: noc:Noc_2508 hypothetical protein; hypothetical protein 675245 8915640 Nhal_0668 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526235.1 674064 D 472759 CDS YP_003526236.1 292490797 8915641 675278..676720 1 NC_013960.1 PFAM: SpoVR family protein; KEGG: noc:Noc_2507 stage V sporulation-like protein, SpoVR; SpoVR family protein 676720 8915641 Nhal_0669 Nitrosococcus halophilus Nc4 SpoVR family protein YP_003526236.1 675278 D 472759 CDS YP_003526237.1 292490798 8915642 676838..676951 1 NC_013960.1 KEGG: mca:MCA2244 hypothetical protein; hypothetical protein 676951 8915642 Nhal_0670 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526237.1 676838 D 472759 CDS YP_003526238.1 292490799 8915643 677519..679204 1 NC_013960.1 PFAM: multicopper oxidase type 3; multicopper oxidase type 2; KEGG: noc:Noc_2506 multicopper oxidase type 3; multicopper oxidase type 3 679204 8915643 Nhal_0671 Nitrosococcus halophilus Nc4 multicopper oxidase type 3 YP_003526238.1 677519 D 472759 CDS YP_003526239.1 292490800 8915644 679211..680242 1 NC_013960.1 KEGG: noc:Noc_2505 hypothetical protein; hypothetical protein 680242 8915644 Nhal_0672 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526239.1 679211 D 472759 CDS YP_003526240.1 292490801 8915645 complement(680375..680827) 1 NC_013960.1 PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: mca:MCA0583 CBS domain-containing protein; CBS domain-containing protein 680827 8915645 Nhal_0673 Nitrosococcus halophilus Nc4 CBS domain-containing protein YP_003526240.1 680375 R 472759 CDS YP_003526241.1 292490802 8915646 complement(680882..681718) 1 NC_013960.1 KEGG: noc:Noc_2504 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; phosphoserine phosphatase SerB 681718 8915646 Nhal_0674 Nitrosococcus halophilus Nc4 phosphoserine phosphatase SerB YP_003526241.1 680882 R 472759 CDS YP_003526242.1 292490803 8915647 682132..682908 1 NC_013960.1 TIGRFAM: methane monooxygenase/ammonia monooxygenase, subunit C; PFAM: Ammonia monooxygenase/methane monooxygenase subunit C; KEGG: noc:Noc_2503 ammonia monooxygenase/methane monooxygenase, subunit C; methane monooxygenase/ammonia monooxygenase subunit C 682908 8915647 Nhal_0675 Nitrosococcus halophilus Nc4 methane monooxygenase/ammonia monooxygenase subunit C YP_003526242.1 682132 D 472759 CDS YP_003526243.1 292490804 8915648 683261..684004 1 NC_013960.1 TIGRFAM: methane monooxygenase/ammonia monooxygenase, subunit A; PFAM: Ammonia monooxygenase/methane monooxygenase subunit A; KEGG: noc:Noc_2502 ammonia monooxygenase; methane monooxygenase/ammonia monooxygenase subunit A 684004 8915648 Nhal_0676 Nitrosococcus halophilus Nc4 methane monooxygenase/ammonia monooxygenase subunit A YP_003526243.1 683261 D 472759 CDS YP_003526244.1 292490805 8915649 684053..685300 1 NC_013960.1 TIGRFAM: methane monooxygenase/ammonia monooxygenase, subunit B; PFAM: Ammonia monooxygenase/methane monooxygenase subunit B; KEGG: noc:Noc_2501 monooxygenase subunit B protein; methane monooxygenase/ammonia monooxygenase subunit B 685300 8915649 Nhal_0677 Nitrosococcus halophilus Nc4 methane monooxygenase/ammonia monooxygenase subunit B YP_003526244.1 684053 D 472759 CDS YP_003526245.1 292490806 8915650 685494..686054 1 NC_013960.1 KEGG: noc:Noc_2500 hypothetical protein; hypothetical protein 686054 8915650 Nhal_0678 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526245.1 685494 D 472759 CDS YP_003526246.1 292490807 8915651 686353..686862 1 NC_013960.1 KEGG: noc:Noc_2499 hypothetical protein; hypothetical protein 686862 8915651 Nhal_0679 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526246.1 686353 D 472759 CDS YP_003526247.1 292490808 8915652 686903..687382 1 NC_013960.1 KEGG: noc:Noc_2498 hypothetical protein; hypothetical protein 687382 8915652 Nhal_0680 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526247.1 686903 D 472759 CDS YP_003526248.1 292490809 8915653 complement(687450..688268) 1 NC_013960.1 PFAM: indole-3-glycerol phosphate synthase; KEGG: noc:Noc_2497 indole-3-glycerol-phosphate synthase; indole-3-glycerol-phosphate synthase 688268 8915653 Nhal_0681 Nitrosococcus halophilus Nc4 indole-3-glycerol-phosphate synthase YP_003526248.1 687450 R 472759 CDS YP_003526249.1 292490810 8915654 complement(688305..689327) 1 NC_013960.1 KEGG: noc:Noc_2496 anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; glycosyl transferase, family 3-like; anthranilate phosphoribosyltransferase 689327 8915654 Nhal_0682 Nitrosococcus halophilus Nc4 anthranilate phosphoribosyltransferase YP_003526249.1 688305 R 472759 CDS YP_003526250.1 292490811 8915655 complement(689386..689967) 1 NC_013960.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: noc:Noc_2495 glutamine amidotransferase; glutamine amidotransferase 689967 8915655 Nhal_0683 Nitrosococcus halophilus Nc4 glutamine amidotransferase YP_003526250.1 689386 R 472759 CDS YP_003526251.1 292490812 8915656 complement(689977..691455) 1 NC_013960.1 KEGG: noc:Noc_2494 anthranilate synthase component I; TIGRFAM: anthranilate synthase component I; PFAM: chorismate binding-like; anthranilate synthase component I domain protein; anthranilate synthase component I 691455 8915656 Nhal_0684 Nitrosococcus halophilus Nc4 anthranilate synthase component I YP_003526251.1 689977 R 472759 CDS YP_003526252.1 292490813 8915657 complement(691570..692247) 1 NC_013960.1 TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase; KEGG: noc:Noc_2493 phosphoglycolate phosphatase; phosphoglycolate phosphatase 692247 8915657 Nhal_0685 Nitrosococcus halophilus Nc4 phosphoglycolate phosphatase YP_003526252.1 691570 R 472759 CDS YP_003526253.1 292490814 8915658 complement(692327..692998) 1 NC_013960.1 KEGG: noc:Noc_2492 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Orotidine 5'-phosphate decarboxylase; ribulose-phosphate 3-epimerase 692998 8915658 Nhal_0686 Nitrosococcus halophilus Nc4 ribulose-phosphate 3-epimerase YP_003526253.1 692327 R 472759 CDS YP_003526254.1 292490815 8915659 693197..693688 1 NC_013960.1 TIGRFAM: FeS assembly SUF system regulator; Rrf2 family transcriptional regulator; PFAM: protein of unknown function UPF0074; KEGG: noc:Noc_2491 hypothetical protein; FeS assembly SUF system regulator 693688 8915659 Nhal_0687 Nitrosococcus halophilus Nc4 FeS assembly SUF system regulator YP_003526254.1 693197 D 472759 CDS YP_003526255.1 292490816 8915660 693685..695133 1 NC_013960.1 TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: noc:Noc_2490 cysteine desulfurase activator complex subunit SufB; FeS assembly protein SufB 695133 8915660 Nhal_0688 Nitrosococcus halophilus Nc4 FeS assembly protein SufB YP_003526255.1 693685 D 472759 CDS YP_003526256.1 292490817 8915661 695185..695958 1 NC_013960.1 KEGG: noc:Noc_2489 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter; SMART: ATPase AAA; FeS assembly ATPase SufC 695958 8915661 Nhal_0689 Nitrosococcus halophilus Nc4 FeS assembly ATPase SufC YP_003526256.1 695185 D 472759 CDS YP_003526257.1 292490818 8915662 695955..697298 1 NC_013960.1 TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: noc:Noc_2488 FeS assembly protein SufD; FeS assembly protein SufD 697298 8915662 Nhal_0690 Nitrosococcus halophilus Nc4 FeS assembly protein SufD YP_003526257.1 695955 D 472759 CDS YP_003526258.1 292490819 8915663 697295..698557 1 NC_013960.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: noc:Noc_2487 cysteine desulphurases, SufS; SufS subfamily cysteine desulfurase 698557 8915663 Nhal_0691 Nitrosococcus halophilus Nc4 SufS subfamily cysteine desulfurase YP_003526258.1 697295 D 472759 CDS YP_003526259.1 292490820 8915664 698554..699006 1 NC_013960.1 TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: noc:Noc_2486 SUF system FeS assembly protein; SUF system FeS assembly protein, NifU family 699006 8915664 Nhal_0692 Nitrosococcus halophilus Nc4 SUF system FeS assembly protein, NifU family YP_003526259.1 698554 D 472759 CDS YP_003526260.1 292490821 8915665 699013..699564 1 NC_013960.1 TIGRFAM: FeS assembly SUF system protein SufT; PFAM: protein of unknown function DUF59; KEGG: noc:Noc_2485 hypothetical protein; FeS assembly SUF system protein SufT 699564 8915665 Nhal_0693 Nitrosococcus halophilus Nc4 FeS assembly SUF system protein SufT YP_003526260.1 699013 D 472759 CDS YP_003526261.1 292490822 8915666 complement(699571..700089) 1 NC_013960.1 KEGG: noc:Noc_2484 transcriptional activator RfaH; TIGRFAM: transcriptional activator RfaH; PFAM: NGN domain protein; SMART: NGN domain protein; transcriptional activator RfaH 700089 8915666 Nhal_0694 Nitrosococcus halophilus Nc4 transcriptional activator RfaH YP_003526261.1 699571 R 472759 CDS YP_003526262.1 292490823 8915667 complement(700150..701520) 1 NC_013960.1 KEGG: noc:Noc_2483 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 701520 8915667 Nhal_0695 Nitrosococcus halophilus Nc4 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_003526262.1 700150 R 472759 CDS YP_003526263.1 292490824 8915668 701683..702312 1 NC_013960.1 KEGG: noc:Noc_2482 adenylylsulfate kinase; TIGRFAM: adenylylsulfate kinase; PFAM: adenylylsulfate kinase; adenylylsulfate kinase 702312 8915668 Nhal_0696 Nitrosococcus halophilus Nc4 adenylylsulfate kinase YP_003526263.1 701683 D 472759 CDS YP_003526264.1 292490825 8915669 702309..703721 1 NC_013960.1 PFAM: RNA-metabolising metallo-beta-lactamase; beta-lactamase; KEGG: pca:Pcar_1488 exonuclease; RNA-metabolising metallo-beta-lactamase 703721 8915669 Nhal_0697 Nitrosococcus halophilus Nc4 RNA-metabolising metallo-beta-lactamase YP_003526264.1 702309 D 472759 CDS YP_003526265.1 292490826 8915670 703828..705261 1 NC_013960.1 PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: noc:Noc_2481 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 705261 8915670 Nhal_0698 Nitrosococcus halophilus Nc4 polysaccharide biosynthesis protein YP_003526265.1 703828 D 472759 CDS YP_003526266.1 292490827 8915671 705258..706364 1 NC_013960.1 PFAM: glycosyl transferase group 1; KEGG: noc:Noc_2480 glycosyl transferase, group 1; group 1 glycosyl transferase 706364 8915671 Nhal_0699 Nitrosococcus halophilus Nc4 group 1 glycosyl transferase YP_003526266.1 705258 D 472759 CDS YP_003526267.1 292490828 8915672 706399..707538 1 NC_013960.1 PFAM: glycosyl transferase group 1; KEGG: noc:Noc_2479 glycosyl transferase, group 1; group 1 glycosyl transferase 707538 8915672 Nhal_0700 Nitrosococcus halophilus Nc4 group 1 glycosyl transferase YP_003526267.1 706399 D 472759 CDS YP_003526268.1 292490829 8915673 707538..709532 1 NC_013960.1 KEGG: noc:Noc_2478 asparagine synthase, glutamine-hydrolyzing; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II; asparagine synthase 709532 8915673 Nhal_0701 Nitrosococcus halophilus Nc4 asparagine synthase YP_003526268.1 707538 D 472759 CDS YP_003526269.1 292490830 8915674 709561..710697 1 NC_013960.1 PFAM: glycosyl transferase group 1; KEGG: noc:Noc_2477 glycosyl transferase, group 1; group 1 glycosyl transferase 710697 8915674 Nhal_0702 Nitrosococcus halophilus Nc4 group 1 glycosyl transferase YP_003526269.1 709561 D 472759 CDS YP_003526270.1 292490831 8915675 710730..711725 1 NC_013960.1 PFAM: glycosyl transferase family 4; KEGG: noc:Noc_2476 glycosyl transferase; glycosyl transferase family protein 711725 8915675 Nhal_0703 Nitrosococcus halophilus Nc4 glycosyl transferase family protein YP_003526270.1 710730 D 472759 CDS YP_003526271.1 292490832 8915676 711867..712196 1 NC_013960.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: noc:Noc_2475 histone-like DNA-binding protein; histone family protein DNA-binding protein 712196 8915676 Nhal_0704 Nitrosococcus halophilus Nc4 histone family protein DNA-binding protein YP_003526271.1 711867 D 472759 CDS YP_003526272.1 292490833 8915677 complement(712240..713277) 1 NC_013960.1 TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: noc:Noc_2474 glycine cleavage T protein (aminomethyl transferase); folate-binding protein YgfZ 713277 8915677 Nhal_0705 Nitrosococcus halophilus Nc4 folate-binding protein YgfZ YP_003526272.1 712240 R 472759 CDS YP_003526273.1 292490834 8915678 713467..713844 1 NC_013960.1 TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: noc:Noc_2473 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, cytochrome b556 subunit 713844 8915678 Nhal_0706 Nitrosococcus halophilus Nc4 succinate dehydrogenase, cytochrome b556 subunit YP_003526273.1 713467 D 472759 CDS YP_003526274.1 292490835 8915679 713841..714170 1 NC_013960.1 TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; KEGG: noc:Noc_2472 succinate dehydrogenase, hydrophobic membrane anchor protein; succinate dehydrogenase, hydrophobic membrane anchor protein 714170 8915679 Nhal_0707 Nitrosococcus halophilus Nc4 succinate dehydrogenase, hydrophobic membrane anchor protein YP_003526274.1 713841 D 472759 CDS YP_003526275.1 292490836 8915680 714167..715930 1 NC_013960.1 TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; succinate dehydrogenase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: noc:Noc_2471 succinate dehydrogenase or fumarate reductase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit 715930 8915680 Nhal_0708 Nitrosococcus halophilus Nc4 succinate dehydrogenase or fumarate reductase, flavoprotein subunit YP_003526275.1 714167 D 472759 CDS YP_003526276.1 292490837 8915681 715954..716649 1 NC_013960.1 TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: noc:Noc_2470 succinate dehydrogenase/fumarate reductase iron-sulfur protein; succinate dehydrogenase and fumarate reductase iron-sulfur protein 716649 8915681 Nhal_0709 Nitrosococcus halophilus Nc4 succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_003526276.1 715954 D 472759 CDS YP_003526277.1 292490838 8915682 716662..716910 1 NC_013960.1 PFAM: protein of unknown function DUF339; KEGG: noc:Noc_2469 hypothetical protein; hypothetical protein 716910 8915682 Nhal_0710 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526277.1 716662 D 472759 CDS YP_003526278.1 292490839 8915683 716873..717316 1 NC_013960.1 KEGG: noc:Noc_2468 hypothetical protein; hypothetical protein 717316 8915683 Nhal_0711 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526278.1 716873 D 472759 CDS YP_003526279.1 292490840 8915684 complement(717363..718997) 1 NC_013960.1 TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: noc:Noc_2467 L-aspartate oxidase; L-aspartate oxidase 718997 8915684 Nhal_0712 Nitrosococcus halophilus Nc4 L-aspartate oxidase YP_003526279.1 717363 R 472759 CDS YP_003526280.1 292490841 8915685 719183..719773 1 NC_013960.1 TIGRFAM: RNA polymerase sigma factor RpoE; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: noc:Noc_2466 RNA polymerase sigma factor RpoE; RNA polymerase sigma factor RpoE 719773 8915685 Nhal_0713 Nitrosococcus halophilus Nc4 RNA polymerase sigma factor RpoE YP_003526280.1 719183 D 472759 CDS YP_003526281.1 292490842 8915686 719831..720400 1 NC_013960.1 PFAM: anti sigma-E protein RseA family protein; KEGG: noc:Noc_2465 anti sigma-E protein RseA-like; anti sigma-E protein RseA family protein 720400 8915686 Nhal_0714 Nitrosococcus halophilus Nc4 anti sigma-E protein RseA family protein YP_003526281.1 719831 D 472759 CDS YP_003526282.1 292490843 8915687 720384..721436 1 NC_013960.1 PFAM: MucB/RseB family protein; KEGG: noc:Noc_2464 MucB/RseB; MucB/RseB family protein 721436 8915687 Nhal_0715 Nitrosococcus halophilus Nc4 MucB/RseB family protein YP_003526282.1 720384 D 472759 CDS YP_003526283.1 292490844 8915688 721643..722086 1 NC_013960.1 PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: noc:Noc_2463 positive regulator of sigma(E), RseC/MucC; Positive regulator of sigma(E) RseC/MucC 722086 8915688 Nhal_0716 Nitrosococcus halophilus Nc4 Positive regulator of sigma(E) RseC/MucC YP_003526283.1 721643 D 472759 CDS YP_003526284.1 292490845 8915689 722235..723650 1 NC_013960.1 KEGG: noc:Noc_2462 peptidase S1C, Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; protease Do 723650 8915689 Nhal_0717 Nitrosococcus halophilus Nc4 protease Do YP_003526284.1 722235 D 472759 CDS YP_003526285.1 292490846 8915690 723777..725573 1 NC_013960.1 TIGRFAM: GTP-binding protein LepA; small GTP-binding protein; PFAM: GTP-binding protein LepA domain protein; elongation factor G domain protein; elongation factor Tu domain 2 protein; protein synthesis factor GTP-binding; KEGG: noc:Noc_2461 GTP-binding protein LepA; GTP-binding protein LepA 725573 8915690 Nhal_0718 Nitrosococcus halophilus Nc4 GTP-binding protein LepA YP_003526285.1 723777 D 472759 CDS YP_003526286.1 292490847 8915691 725656..726477 1 NC_013960.1 KEGG: noc:Noc_2460 peptidase S26A, signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I 726477 8915691 Nhal_0719 Nitrosococcus halophilus Nc4 signal peptidase I YP_003526286.1 725656 D 472759 CDS YP_003526287.1 292490848 8915692 726496..726870 1 NC_013960.1 KEGG: noc:Noc_2459 hypothetical protein; hypothetical protein 726870 8915692 Nhal_0720 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526287.1 726496 D 472759 CDS YP_003526288.1 292490849 8915693 726867..727562 1 NC_013960.1 KEGG: noc:Noc_2458 ribonuclease III; TIGRFAM: ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; SMART: ribonuclease III; double-stranded RNA binding domain protein; ribonuclease III 727562 8915693 Nhal_0721 Nitrosococcus halophilus Nc4 ribonuclease III YP_003526288.1 726867 D 472759 CDS YP_003526289.1 292490850 8915694 727555..728466 1 NC_013960.1 TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; KEGG: noc:Noc_2457 GTP-binding protein Era; GTP-binding protein Era 728466 8915694 Nhal_0722 Nitrosococcus halophilus Nc4 GTP-binding protein Era YP_003526289.1 727555 D 472759 CDS YP_003526290.1 292490851 8915695 complement(728488..729381) 1 NC_013960.1 PFAM: metal-dependent hydrolase HDOD; KEGG: noc:Noc_2456 hypothetical protein; metal-dependent hydrolase HDOD 729381 8915695 Nhal_0723 Nitrosococcus halophilus Nc4 metal-dependent hydrolase HDOD YP_003526290.1 728488 R 472759 CDS YP_003526291.1 292490852 8915696 729603..730784 1 NC_013960.1 PFAM: aminotransferase class I and II; KEGG: noc:Noc_2455 aminotransferase; class I and II aminotransferase 730784 8915696 Nhal_0724 Nitrosococcus halophilus Nc4 class I and II aminotransferase YP_003526291.1 729603 D 472759 CDS YP_003526292.1 292490853 8915697 730819..732129 1 NC_013960.1 PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; KEGG: noc:Noc_2454 homoserine dehydrogenase; homoserine dehydrogenase 732129 8915697 Nhal_0725 Nitrosococcus halophilus Nc4 homoserine dehydrogenase YP_003526292.1 730819 D 472759 CDS YP_003526293.1 292490854 8915698 732221..733303 1 NC_013960.1 TIGRFAM: threonine synthase; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; KEGG: noc:Noc_2453 threonine synthase; threonine synthase 733303 8915698 Nhal_0726 Nitrosococcus halophilus Nc4 threonine synthase YP_003526293.1 732221 D 472759 CDS YP_003526294.1 292490855 8915699 complement(733323..735026) 1 NC_013960.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; KEGG: noc:Noc_2452 multisensor signal transduction histidine kinase; ATP-binding region ATPase domain-containing protein 735026 8915699 Nhal_0727 Nitrosococcus halophilus Nc4 ATP-binding region ATPase domain-containing protein YP_003526294.1 733323 R 472759 CDS YP_003526295.1 292490856 8915700 complement(735026..735490) 1 NC_013960.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: noc:Noc_2451 response regulator receiver; response regulator receiver 735490 8915700 Nhal_0728 Nitrosococcus halophilus Nc4 response regulator receiver YP_003526295.1 735026 R 472759 CDS YP_003526296.1 292490857 8915701 complement(735493..737406) 1 NC_013960.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: noc:Noc_2450 PAS sensor signal transduction histidine kinase; ATP-binding region ATPase domain-containing protein 737406 8915701 Nhal_0729 Nitrosococcus halophilus Nc4 ATP-binding region ATPase domain-containing protein YP_003526296.1 735493 R 472759 CDS YP_003526297.1 292490858 8915702 complement(737463..738338) 1 NC_013960.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: noc:Noc_2448 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 738338 8915702 Nhal_0730 Nitrosococcus halophilus Nc4 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_003526297.1 737463 R 472759 CDS YP_003526298.1 292490859 8915703 complement(738389..739432) 1 NC_013960.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: noc:Noc_2447 peptidyl-arginine deiminase; Agmatine deiminase 739432 8915703 Nhal_0731 Nitrosococcus halophilus Nc4 Agmatine deiminase YP_003526298.1 738389 R 472759 CDS YP_003526299.1 292490860 8915704 complement(739450..740925) 1 NC_013960.1 TIGRFAM: anion transporter; PFAM: sodium/sulfate symporter; citrate transporter; KEGG: noc:Noc_2446 sodium/sulfate symporter; anion transporter 740925 8915704 Nhal_0732 Nitrosococcus halophilus Nc4 anion transporter YP_003526299.1 739450 R 472759 CDS YP_003526300.1 292490861 8915705 741039..741848 1 NC_013960.1 PFAM: metallophosphoesterase; KEGG: mca:MCA2242 calcineurin-like phosphoesterase; metallophosphoesterase 741848 8915705 Nhal_0733 Nitrosococcus halophilus Nc4 metallophosphoesterase YP_003526300.1 741039 D 472759 CDS YP_003526301.1 292490862 8915706 742737..744023 1 NC_013960.1 KEGG: mpt:Mpe_A0812 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAS sensor protein 744023 8915706 Nhal_0734 Nitrosococcus halophilus Nc4 PAS sensor protein YP_003526301.1 742737 D 472759 CDS YP_003526302.1 292490863 8915707 744016..744657 1 NC_013960.1 PFAM: response regulator receiver; LuxR family transcriptional regulator; Sigma-70 region 4 type 2; SMART: response regulator receiver; LuxR family transcriptional regulator; KEGG: noc:Noc_2445 two component LuxR family transcriptional regulator; response regulator receiver 744657 8915707 Nhal_0735 Nitrosococcus halophilus Nc4 response regulator receiver YP_003526302.1 744016 D 472759 CDS YP_003526303.1 292490864 8915708 745068..745859 1 NC_013960.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; transposase IS891/IS1136/IS1341 family; KEGG: pin:Ping_3063 transposase, IS605 OrfB family protein; transposase, IS605 OrfB family 745859 8915708 Nhal_0736 Nitrosococcus halophilus Nc4 transposase, IS605 OrfB family YP_003526303.1 745068 D 472759 CDS YP_003526304.1 292490865 8915709 complement(745930..747087) 1 NC_013960.1 KEGG: noc:Noc_2444 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: radical SAM protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 747087 8915709 Nhal_0737 Nitrosococcus halophilus Nc4 oxygen-independent coproporphyrinogen III oxidase YP_003526304.1 745930 R 472759 CDS YP_003526305.1 292490866 8915710 complement(747126..747728) 1 NC_013960.1 KEGG: noc:Noc_2443 Ham1-like protein; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 747728 8915710 Nhal_0738 Nitrosococcus halophilus Nc4 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase YP_003526305.1 747126 R 472759 CDS YP_003526306.1 292490867 8915711 complement(747732..748451) 1 NC_013960.1 KEGG: noc:Noc_2442 ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; ribonuclease PH 748451 8915711 Nhal_0739 Nitrosococcus halophilus Nc4 ribonuclease PH YP_003526306.1 747732 R 472759 CDS YP_003526307.1 292490868 8915712 748708..749079 1 NC_013960.1 KEGG: noc:Noc_2441 hypothetical protein; hypothetical protein 749079 8915712 Nhal_0740 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526307.1 748708 D 472759 CDS YP_003526308.1 292490869 8915713 749212..749838 1 NC_013960.1 TIGRFAM: methylthioribulose-1-phosphate dehydratase; PFAM: class II aldolase/adducin family protein; KEGG: tgr:Tgr7_2623 methylthioribulose-1-phosphate dehydratase; methylthioribulose-1-phosphate dehydratase 749838 8915713 Nhal_0741 Nitrosococcus halophilus Nc4 methylthioribulose-1-phosphate dehydratase YP_003526308.1 749212 D 472759 CDS YP_003526309.1 292490870 8915714 749835..750377 1 NC_013960.1 PFAM: acireductone dioxygenase; KEGG: tgr:Tgr7_2624 acireductone dioxygenase ARD; acireductone dioxygenase 750377 8915714 Nhal_0742 Nitrosococcus halophilus Nc4 acireductone dioxygenase YP_003526309.1 749835 D 472759 CDS YP_003526310.1 292490871 8915715 750399..751058 1 NC_013960.1 KEGG: mca:MCA0797 HAD superfamily hydrolase; TIGRFAM: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 751058 8915715 Nhal_0743 Nitrosococcus halophilus Nc4 2,3-diketo-5-methylthio-1-phosphopentane phosphatase YP_003526310.1 750399 D 472759 CDS YP_003526311.1 292490872 8915716 complement(751055..752533) 1 NC_013960.1 PFAM: protein of unknown function DUF344; KEGG: mca:MCA3113 hypothetical protein; hypothetical protein 752533 8915716 Nhal_0744 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526311.1 751055 R 472759 CDS YP_003526312.1 292490873 8915717 752820..753515 1 NC_013960.1 KEGG: noc:Noc_0955 hypothetical protein; hypothetical protein 753515 8915717 Nhal_0745 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526312.1 752820 D 472759 CDS YP_003526313.1 292490874 8915718 753653..756043 1 NC_013960.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: mca:MCA1587 phosphoketolase; phosphoketolase 756043 8915718 Nhal_0746 Nitrosococcus halophilus Nc4 phosphoketolase YP_003526313.1 753653 D 472759 CDS YP_003526314.1 292490875 8915719 756151..757248 1 NC_013960.1 PFAM: transposase IS605 OrfB; transposase IS891/IS1136/IS1341 family; KEGG: noc:Noc_1587 transposase; transposase IS605 OrfB 757248 8915719 Nhal_0747 Nitrosococcus halophilus Nc4 transposase IS605 OrfB YP_003526314.1 756151 D 472759 CDS YP_003526315.1 292490876 8915720 757305..758171 1 NC_013960.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: noc:Noc_0956 hypothetical protein; YicC domain-containing protein 758171 8915720 Nhal_0748 Nitrosococcus halophilus Nc4 YicC domain-containing protein YP_003526315.1 757305 D 472759 CDS YP_003526316.1 292490877 8915721 complement(758501..759625) 1 NC_013960.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: mca:MCA0275 DNA-binding protein; hypothetical protein 759625 8915721 Nhal_0749 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526316.1 758501 R 472759 CDS YP_003526317.1 292490878 8915722 complement(759618..759947) 1 NC_013960.1 KEGG: mca:MCA0276 killer suppression protein HigA; killer suppression protein HigA 759947 8915722 Nhal_0750 Nitrosococcus halophilus Nc4 killer suppression protein HigA YP_003526317.1 759618 R 472759 CDS YP_003526318.1 292490879 8915723 760222..762621 1 NC_013960.1 PFAM: N-6 DNA methylase; KEGG: psp:PSPPH_0107 type I restriction-modification system DNA methylase; N-6 DNA methylase 762621 8915723 Nhal_0751 Nitrosococcus halophilus Nc4 N-6 DNA methylase YP_003526318.1 760222 D 472759 CDS YP_003526319.1 292490880 8915724 762635..763960 1 NC_013960.1 PFAM: restriction modification system DNA specificity domain; KEGG: dol:Dole_0277 restriction modification system DNA specificity subunit; restriction modification system DNA specificity domain-containing protein 763960 8915724 Nhal_0752 Nitrosococcus halophilus Nc4 restriction modification system DNA specificity domain-containing protein YP_003526319.1 762635 D 472759 CDS YP_003526320.1 292490881 8915725 764007..765656 1 NC_013960.1 KEGG: dal:Dalk_1276 transcriptional regulator; transcriptional regulator 765656 8915725 Nhal_0753 Nitrosococcus halophilus Nc4 transcriptional regulator YP_003526320.1 764007 D 472759 CDS YP_003526321.1 292490882 8915726 765755..768787 1 NC_013960.1 PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase; KEGG: psp:PSPPH_0104 type I restriction-modification system restriction subunit; hypothetical protein 768787 8915726 Nhal_0754 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526321.1 765755 D 472759 CDS YP_003526322.1 292490883 8915727 768880..769527 1 NC_013960.1 KEGG: noc:Noc_1212 guanylate kinase; TIGRFAM: guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; guanylate kinase 769527 8915727 Nhal_0755 Nitrosococcus halophilus Nc4 guanylate kinase YP_003526322.1 768880 D 472759 CDS YP_003526323.1 292490884 8915728 769744..771027 1 NC_013960.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pna:Pnap_4334 HNH endonuclease; HNH endonuclease 771027 8915728 Nhal_0756 Nitrosococcus halophilus Nc4 HNH endonuclease YP_003526323.1 769744 D 472759 CDS YP_003526324.1 292490885 8915729 771253..771513 1 NC_013960.1 TIGRFAM: DNA-directed RNA polymerase subunit omega; PFAM: RNA polymerase Rpb6; KEGG: noc:Noc_1213 RNA polymerase, omega subunit; DNA-directed RNA polymerase subunit omega 771513 8915729 Nhal_0757 Nitrosococcus halophilus Nc4 DNA-directed RNA polymerase subunit omega YP_003526324.1 771253 D 472759 CDS YP_003526325.1 292490886 8915730 771558..773711 1 NC_013960.1 KEGG: noc:Noc_1214 RelA/SpoT protein; TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; RelA/SpoT family protein 773711 8915730 Nhal_0758 Nitrosococcus halophilus Nc4 RelA/SpoT family protein YP_003526325.1 771558 D 472759 CDS YP_003526326.1 292490887 8915731 773740..774126 1 NC_013960.1 TIGRFAM: endoribonuclease L-PSP; PFAM: endoribonuclease L-PSP; KEGG: noc:Noc_1215 YjgF-like protein; endoribonuclease L-PSP 774126 8915731 Nhal_0759 Nitrosococcus halophilus Nc4 endoribonuclease L-PSP YP_003526326.1 773740 D 472759 CDS YP_003526327.1 292490888 8915732 774101..776239 1 NC_013960.1 KEGG: noc:Noc_1216 ATP-dependent DNA helicase RecG; TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase domain protein; helicase; nucleic acid binding OB-fold tRNA/helicase-type; SMART: DEAD-like helicase ; helicase; ATP-dependent DNA helicase RecG 776239 8915732 Nhal_0760 Nitrosococcus halophilus Nc4 ATP-dependent DNA helicase RecG YP_003526327.1 774101 D 472759 CDS YP_003526328.1 292490889 8915733 776306..777166 1 NC_013960.1 TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: noc:Noc_1217 4-hydroxybenzoate octaprenyltransferase; 4-hydroxybenzoate polyprenyl transferase 777166 8915733 Nhal_0761 Nitrosococcus halophilus Nc4 4-hydroxybenzoate polyprenyl transferase YP_003526328.1 776306 D 472759 CDS YP_003526329.1 292490890 8915734 777212..778033 1 NC_013960.1 PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); KEGG: noc:Noc_1218 micrococcal nuclease; nuclease 778033 8915734 Nhal_0762 Nitrosococcus halophilus Nc4 nuclease YP_003526329.1 777212 D 472759 CDS YP_003526330.1 292490891 8915735 complement(778030..778743) 1 NC_013960.1 KEGG: noc:Noc_2102 competence protein F; competence protein F 778743 8915735 Nhal_0763 Nitrosococcus halophilus Nc4 competence protein F YP_003526330.1 778030 R 472759 CDS YP_003526331.1 292490892 8915736 778795..779829 1 NC_013960.1 KEGG: noc:Noc_2101 biotin synthase; TIGRFAM: biotin synthase; PFAM: biotin and thiamin synthesis associated; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 779829 8915736 Nhal_0764 Nitrosococcus halophilus Nc4 biotin synthase YP_003526331.1 778795 D 472759 CDS YP_003526332.1 292490893 8915737 779836..780999 1 NC_013960.1 KEGG: noc:Noc_2100 8-amino-7-oxononanoate synthase; TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; 8-amino-7-oxononanoate synthase 780999 8915737 Nhal_0765 Nitrosococcus halophilus Nc4 8-amino-7-oxononanoate synthase YP_003526332.1 779836 D 472759 CDS YP_003526333.1 292490894 8915738 780996..781763 1 NC_013960.1 TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold; KEGG: noc:Noc_2099 biotin biosynthesis protein, BioH; bioH protein 781763 8915738 Nhal_0766 Nitrosococcus halophilus Nc4 bioH protein YP_003526333.1 780996 D 472759 CDS YP_003526334.1 292490895 8915739 781787..782716 1 NC_013960.1 TIGRFAM: biotin biosynthesis protein BioC; PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: noc:Noc_2098 biotin biosynthesis protein BioC; biotin biosynthesis protein BioC 782716 8915739 Nhal_0767 Nitrosococcus halophilus Nc4 biotin biosynthesis protein BioC YP_003526334.1 781787 D 472759 CDS YP_003526335.1 292490896 8915740 782730..783470 1 NC_013960.1 KEGG: noc:Noc_2097 dethiobiotin synthase; TIGRFAM: dethiobiotin synthase; PFAM: cobyrinic acid ac-diamide synthase; dethiobiotin synthase 783470 8915740 Nhal_0768 Nitrosococcus halophilus Nc4 dethiobiotin synthase YP_003526335.1 782730 D 472759 CDS YP_003526336.1 292490897 8915741 783901..784593 1 NC_013960.1 PFAM: toluene tolerance protein; KEGG: noc:Noc_2096 toluene tolerance protein; toluene tolerance protein 784593 8915741 Nhal_0769 Nitrosococcus halophilus Nc4 toluene tolerance protein YP_003526336.1 783901 D 472759 CDS YP_003526337.1 292490898 8915742 complement(784620..786689) 1 NC_013960.1 TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: noc:Noc_2095 NAD synthetase; NAD+ synthetase 786689 8915742 Nhal_0770 Nitrosococcus halophilus Nc4 NAD+ synthetase YP_003526337.1 784620 R 472759 CDS YP_003526338.1 292490899 8915743 786791..786976 1 NC_013960.1 KEGG: cja:CJA_1213 hypothetical protein; hypothetical protein 786976 8915743 Nhal_0771 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526338.1 786791 D 472759 CDS YP_003526339.1 292490900 8915744 787007..787327 1 NC_013960.1 KEGG: mpo:Mpop_0997 hypothetical protein; hypothetical protein 787327 8915744 Nhal_0772 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526339.1 787007 D 472759 CDS YP_003526340.1 292490901 8915745 787327..787518 1 NC_013960.1 hypothetical protein 787518 8915745 Nhal_0773 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526340.1 787327 D 472759 CDS YP_003526341.1 292490902 8915746 787663..788019 1 NC_013960.1 PFAM: protein of unknown function DUF488; KEGG: noc:Noc_2090 hypothetical protein; hypothetical protein 788019 8915746 Nhal_0774 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526341.1 787663 D 472759 CDS YP_003526342.1 292490903 8915747 788188..788847 1 NC_013960.1 KEGG: tgr:Tgr7_1690 phosphoribosyl transferase; phosphoribosyl transferase 788847 8915747 Nhal_0775 Nitrosococcus halophilus Nc4 phosphoribosyl transferase YP_003526342.1 788188 D 472759 CDS YP_003526343.1 292490904 8915748 788896..789591 1 NC_013960.1 PFAM: dienelactone hydrolase; KEGG: scl:sce9042 hypothetical protein; dienelactone hydrolase 789591 8915748 Nhal_0776 Nitrosococcus halophilus Nc4 dienelactone hydrolase YP_003526343.1 788896 D 472759 CDS YP_003526344.1 292490905 8915749 789607..789939 1 NC_013960.1 KEGG: noc:Noc_2089 H+-ATPase, subunit H; H+-ATPase subunit H 789939 8915749 Nhal_0777 Nitrosococcus halophilus Nc4 H+-ATPase subunit H YP_003526344.1 789607 D 472759 CDS YP_003526345.1 292490906 8915750 789943..791097 1 NC_013960.1 PFAM: H+transporting two-sector ATPase C (AC39) subunit; KEGG: noc:Noc_2088 H+-transporting two-sector ATPase, C (AC39) subunit; H+transporting two-sector ATPase C (AC39) subunit 791097 8915750 Nhal_0778 Nitrosococcus halophilus Nc4 H+transporting two-sector ATPase C (AC39) subunit YP_003526345.1 789943 D 472759 CDS YP_003526346.1 292490907 8915751 791135..793099 1 NC_013960.1 PFAM: V-type ATPase 116 kDa subunit; KEGG: noc:Noc_2087 V-type ATPase, 116 kDa subunit; V-type ATPase 116 kDa subunit 793099 8915751 Nhal_0779 Nitrosococcus halophilus Nc4 V-type ATPase 116 kDa subunit YP_003526346.1 791135 D 472759 CDS YP_003526347.1 292490908 8915752 793125..793577 1 NC_013960.1 PFAM: H+transporting two-sector ATPase C subunit; KEGG: noc:Noc_2086 H+-transporting two-sector ATPase, C subunit; H+transporting two-sector ATPase C subunit 793577 8915752 Nhal_0780 Nitrosococcus halophilus Nc4 H+transporting two-sector ATPase C subunit YP_003526347.1 793125 D 472759 CDS YP_003526348.1 292490909 8915753 793577..793969 1 NC_013960.1 KEGG: noc:Noc_2085 hypothetical protein; hypothetical protein 793969 8915753 Nhal_0781 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526348.1 793577 D 472759 CDS YP_003526349.1 292490910 8915754 793966..794619 1 NC_013960.1 PFAM: H+transporting two-sector ATPase E subunit; KEGG: noc:Noc_2084 H+-transporting two-sector ATPase, E subunit; H+transporting two-sector ATPase E subunit 794619 8915754 Nhal_0782 Nitrosococcus halophilus Nc4 H+transporting two-sector ATPase E subunit YP_003526349.1 793966 D 472759 CDS YP_003526350.1 292490911 8915755 794612..796393 1 NC_013960.1 PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; KEGG: noc:Noc_2083 V-type ATP synthase subunit A; H(+)-transporting two-sector ATPase 796393 8915755 Nhal_0783 Nitrosococcus halophilus Nc4 H(+)-transporting two-sector ATPase YP_003526350.1 794612 D 472759 CDS YP_003526351.1 292490912 8915756 796390..797817 1 NC_013960.1 PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; KEGG: noc:Noc_2082 V-type ATP synthase subunit B; H(+)-transporting two-sector ATPase 797817 8915756 Nhal_0784 Nitrosococcus halophilus Nc4 H(+)-transporting two-sector ATPase YP_003526351.1 796390 D 472759 CDS YP_003526352.1 292490913 8915757 797817..798434 1 NC_013960.1 TIGRFAM: V-type ATPase, D subunit; PFAM: H+transporting two-sector ATPase D subunit; KEGG: noc:Noc_2081 H+-transporting two-sector ATPase, D subunit; V-type ATPase subunit D 798434 8915757 Nhal_0785 Nitrosococcus halophilus Nc4 V-type ATPase subunit D YP_003526352.1 797817 D 472759 CDS YP_003526353.1 292490914 8915758 complement(798608..799336) 1 NC_013960.1 hypothetical protein 799336 8915758 Nhal_0786 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526353.1 798608 R 472759 CDS YP_003526354.1 292490915 8915759 complement(799603..799872) 1 NC_013960.1 KEGG: rpt:Rpal_1136 hypothetical protein; hypothetical protein 799872 8915759 Nhal_0787 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526354.1 799603 R 472759 CDS YP_003526355.1 292490916 8915760 complement(799885..800844) 1 NC_013960.1 KEGG: rpt:Rpal_1135 hypothetical protein; hypothetical protein 800844 8915760 Nhal_0788 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526355.1 799885 R 472759 CDS YP_003526356.1 292490917 8915761 complement(801256..801696) 1 NC_013960.1 PFAM: restriction endonuclease; DNA topoisomerase type IA zn finger domain protein; KEGG: noc:Noc_A0010 restriction endonuclease; restriction endonuclease 801696 8915761 Nhal_0789 Nitrosococcus halophilus Nc4 restriction endonuclease YP_003526356.1 801256 R 472759 CDS YP_003526357.1 292490918 8915762 complement(801760..802104) 1 NC_013960.1 KEGG: noc:Noc_A0009 hypothetical protein; hypothetical protein 802104 8915762 Nhal_0790 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526357.1 801760 R 472759 CDS YP_003526358.1 292490919 8915763 802144..802248 1 NC_013960.1 hypothetical protein 802248 8915763 Nhal_0791 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526358.1 802144 D 472759 CDS YP_003526359.1 292490920 8915764 802273..803034 1 NC_013960.1 PFAM: transport-associated; KEGG: noc:Noc_1774 periplasmic or secreted lipoprotein; transporter 803034 8915764 Nhal_0792 Nitrosococcus halophilus Nc4 transporter YP_003526359.1 802273 D 472759 CDS YP_003526360.1 292490921 8915765 complement(803105..803641) 1 NC_013960.1 KEGG: noc:Noc_1773 hypothetical protein; hypothetical protein 803641 8915765 Nhal_0793 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526360.1 803105 R 472759 CDS YP_003526361.1 292490922 8915766 804002..804274 1 NC_013960.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: noc:Noc_1772 histone-like DNA-binding protein; histone family protein DNA-binding protein 804274 8915766 Nhal_0794 Nitrosococcus halophilus Nc4 histone family protein DNA-binding protein YP_003526361.1 804002 D 472759 CDS YP_003526362.1 292490923 8915769 804567..806480 1 NC_013960.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: noc:Noc_1771 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 806480 8915769 Nhal_0795 Nitrosococcus halophilus Nc4 PpiC-type peptidyl-prolyl cis-trans isomerase YP_003526362.1 804567 D 472759 CDS YP_003526363.1 292490924 8915770 complement(806482..807693) 1 NC_013960.1 PFAM: sodium:dicarboxylate symporter; KEGG: noc:Noc_1770 sodium/dicarboxylate symporter; sodium:dicarboxylate symporter 807693 8915770 Nhal_0796 Nitrosococcus halophilus Nc4 sodium:dicarboxylate symporter YP_003526363.1 806482 R 472759 CDS YP_003526364.1 292490925 8915771 complement(807779..808558) 1 NC_013960.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: noc:Noc_1769 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 808558 8915771 Nhal_0797 Nitrosococcus halophilus Nc4 short-chain dehydrogenase/reductase SDR YP_003526364.1 807779 R 472759 CDS YP_003526365.1 292490926 8915772 808685..810874 1 NC_013960.1 PFAM: extracellular solute-binding protein family 5; KEGG: noc:Noc_1768 extracellular solute-binding protein; family 5 extracellular solute-binding protein 810874 8915772 Nhal_0798 Nitrosococcus halophilus Nc4 family 5 extracellular solute-binding protein YP_003526365.1 808685 D 472759 CDS YP_003526366.1 292490927 8915774 811810..811995 1 NC_013960.1 hypothetical protein 811995 8915774 Nhal_0800 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526366.1 811810 D 472759 CDS YP_003526367.1 292490928 8915775 811995..812153 1 NC_013960.1 hypothetical protein 812153 8915775 Nhal_0801 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526367.1 811995 D 472759 CDS YP_003526368.1 292490929 8915776 complement(812446..812715) 1 NC_013960.1 KEGG: bxe:Bxe_B0464 hypothetical protein; hypothetical protein 812715 8915776 Nhal_0802 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526368.1 812446 R 472759 CDS YP_003526369.1 292490930 8915777 complement(812780..813070) 1 NC_013960.1 KEGG: cti:RALTA_A2185 hypothetical protein; hypothetical protein 813070 8915777 Nhal_0803 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526369.1 812780 R 472759 CDS YP_003526370.1 292490931 8915778 813697..813909 1 NC_013960.1 PFAM: protein of unknown function UPF0150; KEGG: noc:Noc_1108 hypothetical protein; hypothetical protein 813909 8915778 Nhal_0804 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526370.1 813697 D 472759 CDS YP_003526371.1 292490932 8915780 815090..815428 1 NC_013960.1 TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain protein; KEGG: aha:AHA_0586 protein CsaA; export-related chaperone CsaA 815428 8915780 Nhal_0806 Nitrosococcus halophilus Nc4 export-related chaperone CsaA YP_003526371.1 815090 D 472759 CDS YP_003526372.1 292490933 8915781 complement(815514..815924) 1 NC_013960.1 KEGG: eba:ebB111 nucleic acid-binding protein; nucleic acid-binding protein 815924 8915781 Nhal_0807 Nitrosococcus halophilus Nc4 nucleic acid-binding protein YP_003526372.1 815514 R 472759 CDS YP_003526373.1 292490934 8915782 complement(815921..816163) 1 NC_013960.1 KEGG: neu:NE1590 hypothetical protein; hypothetical protein 816163 8915782 Nhal_0808 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526373.1 815921 R 472759 CDS YP_003526374.1 292490935 8915783 complement(816602..816868) 1 NC_013960.1 KEGG: noc:Noc_1760 hypothetical protein; hypothetical protein 816868 8915783 Nhal_0809 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526374.1 816602 R 472759 CDS YP_003526375.1 292490936 8915784 816979..817995 1 NC_013960.1 PFAM: ribonuclease T2; KEGG: mca:MCA1293 ribonuclease T2 family protein; ribonuclease T2 817995 8915784 Nhal_0810 Nitrosococcus halophilus Nc4 ribonuclease T2 YP_003526375.1 816979 D 472759 CDS YP_003526376.1 292490937 8915785 818007..818474 1 NC_013960.1 KEGG: noc:Noc_1595 hypothetical protein; hypothetical protein 818474 8915785 Nhal_0811 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526376.1 818007 D 472759 CDS YP_003526377.1 292490938 8915786 818488..818808 1 NC_013960.1 hypothetical protein 818808 8915786 Nhal_0812 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526377.1 818488 D 472759 CDS YP_003526378.1 292490939 8915787 818873..820675 1 NC_013960.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_1262 ABC transporter ATPase; ABC transporter 820675 8915787 Nhal_0813 Nitrosococcus halophilus Nc4 ABC transporter YP_003526378.1 818873 D 472759 CDS YP_003526379.1 292490940 8915788 820878..821057 1 NC_013960.1 hypothetical protein 821057 8915788 Nhal_0814 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526379.1 820878 D 472759 CDS YP_003526380.1 292490941 8915789 821240..821701 1 NC_013960.1 KEGG: noc:Noc_0532 hypothetical protein; hypothetical protein 821701 8915789 Nhal_0815 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526380.1 821240 D 472759 CDS YP_003526381.1 292490942 8915790 821739..822692 1 NC_013960.1 PFAM: lipase class 3; KEGG: mca:MCA0075 lipase family protein; lipase class 3 822692 8915790 Nhal_0816 Nitrosococcus halophilus Nc4 lipase class 3 YP_003526381.1 821739 D 472759 CDS YP_003526382.1 292490943 8915791 822795..823565 1 NC_013960.1 KEGG: hch:HCH_06804 hypothetical protein; hypothetical protein 823565 8915791 Nhal_0817 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526382.1 822795 D 472759 CDS YP_003526383.1 292490944 8915792 complement(823716..823868) 1 NC_013960.1 PFAM: CopG domain protein DNA-binding domain protein; CopG domain-containing protein DNA-binding domain-containing protein 823868 8915792 Nhal_0818 Nitrosococcus halophilus Nc4 CopG domain-containing protein DNA-binding domain-containing protein YP_003526383.1 823716 R 472759 CDS YP_003526384.1 292490945 8915794 825700..826779 1 NC_013960.1 PFAM: Di-haem cytochrome C peroxidase; KEGG: noc:Noc_1263 cytochrome C peroxidase; cytochrome-c peroxidase 826779 8915794 Nhal_0820 Nitrosococcus halophilus Nc4 cytochrome-c peroxidase YP_003526384.1 825700 D 472759 CDS YP_003526385.1 292490946 8915796 827875..831210 1 NC_013960.1 PFAM: acriflavin resistance protein; KEGG: sfu:Sfum_3380 acriflavin resistance protein; acriflavin resistance protein 831210 8915796 Nhal_0822 Nitrosococcus halophilus Nc4 acriflavin resistance protein YP_003526385.1 827875 D 472759 CDS YP_003526386.1 292490947 8915797 831220..832734 1 NC_013960.1 PFAM: outer membrane efflux protein; KEGG: mca:MCA2154 outer membrane protein CyaE; outer membrane efflux protein 832734 8915797 Nhal_0823 Nitrosococcus halophilus Nc4 outer membrane efflux protein YP_003526386.1 831220 D 472759 CDS YP_003526387.1 292490948 8915798 832834..833862 1 NC_013960.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: cps:CPS_1234 RND family efflux transporter MFP subunit; RND family efflux transporter MFP subunit 833862 8915798 Nhal_0824 Nitrosococcus halophilus Nc4 RND family efflux transporter MFP subunit YP_003526387.1 832834 D 472759 CDS YP_003526388.1 292490949 8915799 833962..834162 1 NC_013960.1 KEGG: bph:Bphy_3846 hypothetical protein; hypothetical protein 834162 8915799 Nhal_0825 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526388.1 833962 D 472759 CDS YP_003526389.1 292490950 8915800 complement(834212..835744) 1 NC_013960.1 PFAM: Forkhead-associated protein; von Willebrand factor type A; SMART: von Willebrand factor type A; Forkhead-associated protein; KEGG: abm:ABSDF3254 hypothetical protein; von Willebrand factor A 835744 8915800 Nhal_0826 Nitrosococcus halophilus Nc4 von Willebrand factor A YP_003526389.1 834212 R 472759 CDS YP_003526390.1 292490951 8915801 835840..836736 1 NC_013960.1 KEGG: tmz:Tmz1t_1979 hypothetical protein; hypothetical protein 836736 8915801 Nhal_0827 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526390.1 835840 D 472759 CDS YP_003526391.1 292490952 8915802 836782..838056 1 NC_013960.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: pmy:Pmen_2313 protein kinase; serine/threonine protein kinase-like protein 838056 8915802 Nhal_0828 Nitrosococcus halophilus Nc4 serine/threonine protein kinase-like protein YP_003526391.1 836782 D 472759 CDS YP_003526392.1 292490953 8915803 838448..841072 1 NC_013960.1 PFAM: peptidase C14 caspase catalytic subunit p20; Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: hch:HCH_04244 hypothetical protein; peptidase C14 caspase catalytic subunit p20 841072 8915803 Nhal_0829 Nitrosococcus halophilus Nc4 peptidase C14 caspase catalytic subunit p20 YP_003526392.1 838448 D 472759 CDS YP_003526393.1 292490954 8915804 complement(841181..842602) 1 NC_013960.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: hch:HCH_04240 outer membrane protein domain-containing protein; outer membrane autotransporter barrel domain-containing protein 842602 8915804 Nhal_0830 Nitrosococcus halophilus Nc4 outer membrane autotransporter barrel domain-containing protein YP_003526393.1 841181 R 472759 CDS YP_003526394.1 292490955 8915805 843179..843958 1 NC_013960.1 KEGG: bxe:Bxe_B0477 protein serine/threonine phosphatases; PFAM: protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; phosphoprotein phosphatase 843958 8915805 Nhal_0831 Nitrosococcus halophilus Nc4 phosphoprotein phosphatase YP_003526394.1 843179 D 472759 CDS YP_003526395.1 292490956 8915806 complement(843980..845242) 1 NC_013960.1 PFAM: sigma-54 factor interaction domain-containing protein; ATPase AAA; SMART: AAA ATPase; KEGG: eba:ebA1664 sigma-N-dependent transcriptional regulator; sigma-54 factor interaction domain-containing protein 845242 8915806 Nhal_0832 Nitrosococcus halophilus Nc4 sigma-54 factor interaction domain-containing protein YP_003526395.1 843980 R 472759 CDS YP_003526396.1 292490957 8915807 complement(845239..848289) 1 NC_013960.1 PFAM: ABC transporter; cyclic nucleotide-binding; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: ATPase AAA; cyclic nucleotide-binding; KEGG: eba:ebA1666 fusion of ABC transporter-type transmembrane and ATP binding protein; ABC transporter 848289 8915807 Nhal_0833 Nitrosococcus halophilus Nc4 ABC transporter YP_003526396.1 845239 R 472759 CDS YP_003526397.1 292490958 8915808 complement(848318..849070) 1 NC_013960.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: eba:ebA1670 rotamase (prolyl cis-trans isomerase); PpiC-type peptidyl-prolyl cis-trans isomerase 849070 8915808 Nhal_0834 Nitrosococcus halophilus Nc4 PpiC-type peptidyl-prolyl cis-trans isomerase YP_003526397.1 848318 R 472759 CDS YP_003526398.1 292490959 8915809 complement(849152..850528) 1 NC_013960.1 PFAM: secretion protein HlyD; KEGG: bxe:Bxe_B0473 secretion protein HylD; secretion protein HlyD 850528 8915809 Nhal_0835 Nitrosococcus halophilus Nc4 secretion protein HlyD YP_003526398.1 849152 R 472759 CDS YP_003526399.1 292490960 8915810 complement(850603..853101) 1 NC_013960.1 PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: bpy:Bphyt_3999 FHA domain containing protein; Forkhead-associated protein 853101 8915810 Nhal_0836 Nitrosococcus halophilus Nc4 Forkhead-associated protein YP_003526399.1 850603 R 472759 CDS YP_003526400.1 292490961 8915811 complement(853143..854627) 1 NC_013960.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: cti:RALTA_A2177 outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 854627 8915811 Nhal_0837 Nitrosococcus halophilus Nc4 NodT family RND efflux system outer membrane lipoprotein YP_003526400.1 853143 R 472759 CDS YP_003526401.1 292490962 8915812 complement(855025..856362) 1 NC_013960.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; Forkhead-associated protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; Forkhead-associated protein; KEGG: mxa:MXAN_0353 sigma-54 dependent trancsriptional regulator; Fis family transcriptional regulator 856362 8915812 Nhal_0838 Nitrosococcus halophilus Nc4 Fis family transcriptional regulator YP_003526401.1 855025 R 472759 CDS YP_003526402.1 292490963 8915813 complement(856440..857210) 1 NC_013960.1 KEGG: noc:Noc_0931 hypothetical protein; hypothetical protein 857210 8915813 Nhal_0839 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526402.1 856440 R 472759 CDS YP_003526403.1 292490964 8915814 complement(857220..857516) 1 NC_013960.1 KEGG: noc:Noc_0932 hypothetical protein; hypothetical protein 857516 8915814 Nhal_0840 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526403.1 857220 R 472759 CDS YP_003526404.1 292490965 8915815 857740..858717 1 NC_013960.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: noc:Noc_0933 ABC transporter inner membrane subunit; binding-protein-dependent transporters inner membrane component 858717 8915815 Nhal_0841 Nitrosococcus halophilus Nc4 binding-protein-dependent transporters inner membrane component YP_003526404.1 857740 D 472759 CDS YP_003526405.1 292490966 8915816 858718..860127 1 NC_013960.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: noc:Noc_0934 ABC transporter inner membrane subunit; binding-protein-dependent transporters inner membrane component 860127 8915816 Nhal_0842 Nitrosococcus halophilus Nc4 binding-protein-dependent transporters inner membrane component YP_003526405.1 858718 D 472759 CDS YP_003526406.1 292490967 8915817 860130..860999 1 NC_013960.1 PFAM: ion transporter; KEGG: tgr:Tgr7_1920 ion transporter; ion transporter 860999 8915817 Nhal_0843 Nitrosococcus halophilus Nc4 ion transporter YP_003526406.1 860130 D 472759 CDS YP_003526407.1 292490968 8915818 860992..863007 1 NC_013960.1 KEGG: noc:Noc_0936 oligopeptide/dipeptide ABC transporter ATPase; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; peptide ABC transporter ATPase 863007 8915818 Nhal_0844 Nitrosococcus halophilus Nc4 peptide ABC transporter ATPase YP_003526407.1 860992 D 472759 CDS YP_003526408.1 292490969 8915819 863075..863785 1 NC_013960.1 KEGG: sfu:Sfum_2864 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 863785 8915819 Nhal_0845 Nitrosococcus halophilus Nc4 protein-L-isoaspartate O-methyltransferase YP_003526408.1 863075 D 472759 CDS YP_003526409.1 292490970 8915820 864123..865421 1 NC_013960.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: noc:Noc_0937 hypothetical protein; hypothetical protein 865421 8915820 Nhal_0846 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526409.1 864123 D 472759 CDS YP_003526410.1 292490971 8915821 865548..866195 1 NC_013960.1 KEGG: noc:Noc_0938 ubiquinone biosynthesis protein; ubiquinone biosynthesis protein 866195 8915821 Nhal_0847 Nitrosococcus halophilus Nc4 ubiquinone biosynthesis protein YP_003526410.1 865548 D 472759 CDS YP_003526411.1 292490972 8915822 866265..867155 1 NC_013960.1 PFAM: peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: noc:Noc_0939 peptidoglycan-binding LysM; peptidoglycan-binding LysM 867155 8915822 Nhal_0848 Nitrosococcus halophilus Nc4 peptidoglycan-binding LysM YP_003526411.1 866265 D 472759 CDS YP_003526412.1 292490973 8915823 complement(867250..868509) 1 NC_013960.1 TIGRFAM: cytochrome C biogenesis protein CcmI; PFAM: hypothetical protein; KEGG: noc:Noc_0940 cytochrome C biogenesis factor; cytochrome C biogenesis protein CcmI 868509 8915823 Nhal_0849 Nitrosococcus halophilus Nc4 cytochrome C biogenesis protein CcmI YP_003526412.1 867250 R 472759 CDS YP_003526413.1 292490974 8915824 complement(868511..868966) 1 NC_013960.1 PFAM: cytochrome C biogenesis protein; KEGG: noc:Noc_0941 cytochrome C biogenesis protein; cytochrome C biogenesis protein 868966 8915824 Nhal_0850 Nitrosococcus halophilus Nc4 cytochrome C biogenesis protein YP_003526413.1 868511 R 472759 CDS YP_003526414.1 292490975 8915825 complement(868968..869501) 1 NC_013960.1 TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: redoxin; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: noc:Noc_0942 periplasmic protein thiol-disulfide oxidoreductase DsbE; periplasmic protein thiol/disulfide oxidoreductase DsbE 869501 8915825 Nhal_0851 Nitrosococcus halophilus Nc4 periplasmic protein thiol/disulfide oxidoreductase DsbE YP_003526414.1 868968 R 472759 CDS YP_003526415.1 292490976 8915826 complement(869501..871486) 1 NC_013960.1 TIGRFAM: cytochrome C biogenesis protein CcmF; PFAM: cytochrome C assembly protein; KEGG: noc:Noc_0943 cytochrome C biogenesis protein CcmF; cytochrome C biogenesis protein CcmF 871486 8915826 Nhal_0852 Nitrosococcus halophilus Nc4 cytochrome C biogenesis protein CcmF YP_003526415.1 869501 R 472759 CDS YP_003526416.1 292490977 8915827 complement(871483..871926) 1 NC_013960.1 PFAM: CcmE/CycJ protein; KEGG: noc:Noc_0944 cytochrome c-type biogenesis protein CcmE; CcmE/CycJ protein 871926 8915827 Nhal_0853 Nitrosococcus halophilus Nc4 CcmE/CycJ protein YP_003526416.1 871483 R 472759 CDS YP_003526417.1 292490978 8915828 complement(871923..872081) 1 NC_013960.1 TIGRFAM: heme exporter protein CcmD; PFAM: Heme exporter protein D (CcmD); KEGG: mca:MCA0420 heme exporter protein CcmD; heme exporter protein CcmD 872081 8915828 Nhal_0854 Nitrosococcus halophilus Nc4 heme exporter protein CcmD YP_003526417.1 871923 R 472759 CDS YP_003526418.1 292490979 8915829 complement(872306..873058) 1 NC_013960.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome C assembly protein; KEGG: noc:Noc_0946 cytochrome C biogenesis protein CcmC; heme exporter protein CcmC 873058 8915829 Nhal_0855 Nitrosococcus halophilus Nc4 heme exporter protein CcmC YP_003526418.1 872306 R 472759 CDS YP_003526419.1 292490980 8915830 complement(873068..873772) 1 NC_013960.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: noc:Noc_0947 cytochrome C biogenesis protein CcmB; heme exporter protein CcmB 873772 8915830 Nhal_0856 Nitrosococcus halophilus Nc4 heme exporter protein CcmB YP_003526419.1 873068 R 472759 CDS YP_003526420.1 292490981 8915831 complement(873781..874431) 1 NC_013960.1 KEGG: noc:Noc_0948 heme exporter protein CcmA; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter; SMART: ATPase AAA; heme exporter protein CcmA 874431 8915831 Nhal_0857 Nitrosococcus halophilus Nc4 heme exporter protein CcmA YP_003526420.1 873781 R 472759 CDS YP_003526421.1 292490982 8915832 874798..876339 1 NC_013960.1 KEGG: noc:Noc_0949 hypothetical protein; hypothetical protein 876339 8915832 Nhal_0858 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526421.1 874798 D 472759 CDS YP_003526422.1 292490983 8915833 876339..877742 1 NC_013960.1 PFAM: GTP-binding protein HSR1-related; KEGG: noc:Noc_0950 GTP-binding protein, HSR1-related; GTP-binding protein HSR1-like protein 877742 8915833 Nhal_0859 Nitrosococcus halophilus Nc4 GTP-binding protein HSR1-like protein YP_003526422.1 876339 D 472759 CDS YP_003526423.1 292490984 8915834 complement(877812..878624) 1 NC_013960.1 TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase related; KEGG: noc:Noc_0951 S-adenosylmethionine decarboxylase; S-adenosylmethionine decarboxylase proenzyme 878624 8915834 Nhal_0860 Nitrosococcus halophilus Nc4 S-adenosylmethionine decarboxylase proenzyme YP_003526423.1 877812 R 472759 CDS YP_003526424.1 292490985 8915835 complement(878706..879104) 1 NC_013960.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: noc:Noc_0952 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 879104 8915835 Nhal_0861 Nitrosococcus halophilus Nc4 glyoxalase/bleomycin resistance protein/dioxygenase YP_003526424.1 878706 R 472759 CDS YP_003526425.1 292490986 8915836 complement(879219..879659) 1 NC_013960.1 PFAM: OsmC family protein; KEGG: noc:Noc_0953 OsmC-like protein; OsmC family protein 879659 8915836 Nhal_0862 Nitrosococcus halophilus Nc4 OsmC family protein YP_003526425.1 879219 R 472759 CDS YP_003526426.1 292490987 8915837 879727..880407 1 NC_013960.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: noc:Noc_0954 cAMP-regulatory protein; cyclic nucleotide-binding protein 880407 8915837 Nhal_0863 Nitrosococcus halophilus Nc4 cyclic nucleotide-binding protein YP_003526426.1 879727 D 472759 CDS YP_003526427.1 292490988 8915838 complement(880465..882234) 1 NC_013960.1 PFAM: TrkA-C domain protein; citrate transporter; TRAP C4-dicarboxylate transporter permease DctM subunit; KEGG: noc:Noc_1175 TrkA-C, di- and tricarboxylate transporters; TrkA-C domain-containing protein 882234 8915838 Nhal_0864 Nitrosococcus halophilus Nc4 TrkA-C domain-containing protein YP_003526427.1 880465 R 472759 CDS YP_003526428.1 292490989 8915839 complement(882344..882532) 1 NC_013960.1 KEGG: noc:Noc_1176 hypothetical protein; hypothetical protein 882532 8915839 Nhal_0865 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526428.1 882344 R 472759 CDS YP_003526429.1 292490990 8915840 882673..882861 1 NC_013960.1 KEGG: smt:Smal_1303 DoxX family protein; hypothetical protein 882861 8915840 Nhal_0866 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526429.1 882673 D 472759 CDS YP_003526430.1 292490991 8915841 882903..883586 1 NC_013960.1 PFAM: glycosyl transferase family 2; KEGG: bgl:bglu_2p1020 glycosyl transferase, family 2; family 2 glycosyl transferase 883586 8915841 Nhal_0867 Nitrosococcus halophilus Nc4 family 2 glycosyl transferase YP_003526430.1 882903 D 472759 CDS YP_003526431.1 292490992 8915842 883651..884292 1 NC_013960.1 KEGG: tgr:Tgr7_1957 hypothetical protein; hypothetical protein 884292 8915842 Nhal_0868 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526431.1 883651 D 472759 CDS YP_003526432.1 292490993 8915843 884509..885048 1 NC_013960.1 KEGG: noc:Noc_1178 hypothetical protein; hypothetical protein 885048 8915843 Nhal_0869 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526432.1 884509 D 472759 CDS YP_003526433.1 292490994 8915844 885060..885395 1 NC_013960.1 TIGRFAM: preprotein translocase subunit YajC; PFAM: YajC family protein; KEGG: noc:Noc_1179 preprotein translocase subunit, YajC; preprotein translocase subunit YajC 885395 8915844 Nhal_0870 Nitrosococcus halophilus Nc4 preprotein translocase subunit YajC YP_003526433.1 885060 D 472759 CDS YP_003526434.1 292490995 8915845 885528..886094 1 NC_013960.1 TIGRFAM: deoxycytidine triphosphate deaminase; PFAM: deoxyUTP pyrophosphatase; KEGG: noc:Noc_1180 deoxycytidine triphosphate deaminase; deoxycytidine triphosphate deaminase 886094 8915845 Nhal_0871 Nitrosococcus halophilus Nc4 deoxycytidine triphosphate deaminase YP_003526434.1 885528 D 472759 CDS YP_003526435.1 292490996 8915846 complement(886091..886714) 1 NC_013960.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase; KEGG: noc:Noc_1181 phosphoribosylglycinamide formyltransferase; phosphoribosylglycinamide formyltransferase 886714 8915846 Nhal_0872 Nitrosococcus halophilus Nc4 phosphoribosylglycinamide formyltransferase YP_003526435.1 886091 R 472759 CDS YP_003526436.1 292490997 8915847 complement(886711..887787) 1 NC_013960.1 KEGG: noc:Noc_1182 phosphoribosylaminoimidazole synthetase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; phosphoribosylformylglycinamidine cyclo-ligase 887787 8915847 Nhal_0873 Nitrosococcus halophilus Nc4 phosphoribosylformylglycinamidine cyclo-ligase YP_003526436.1 886711 R 472759 CDS YP_003526437.1 292490998 8915848 887941..888999 1 NC_013960.1 KEGG: noc:Noc_1185 hypothetical protein; hypothetical protein 888999 8915848 Nhal_0874 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526437.1 887941 D 472759 CDS YP_003526438.1 292490999 8915849 889009..889614 1 NC_013960.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: noc:Noc_1186 CDP-alcohol phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 889614 8915849 Nhal_0875 Nitrosococcus halophilus Nc4 CDP-alcohol phosphatidyltransferase YP_003526438.1 889009 D 472759 CDS YP_003526439.1 292491000 8915850 889627..890334 1 NC_013960.1 TIGRFAM: DnaA regulatory inactivator Hda; PFAM: Chromosomal replication initiator DnaA; KEGG: noc:Noc_1187 chromosomal replication initiator protein DnaA; DnaA regulatory inactivator Hda 890334 8915850 Nhal_0876 Nitrosococcus halophilus Nc4 DnaA regulatory inactivator Hda YP_003526439.1 889627 D 472759 CDS YP_003526440.1 292491001 8915851 890353..891399 1 NC_013960.1 KEGG: noc:Noc_1188 signal peptide protein; signal peptide protein 891399 8915851 Nhal_0877 Nitrosococcus halophilus Nc4 signal peptide protein YP_003526440.1 890353 D 472759 CDS YP_003526441.1 292491002 8915852 891451..893187 1 NC_013960.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: noc:Noc_1189 RecJ exonuclease; single-stranded-DNA-specific exonuclease RecJ 893187 8915852 Nhal_0878 Nitrosococcus halophilus Nc4 single-stranded-DNA-specific exonuclease RecJ YP_003526441.1 891451 D 472759 CDS YP_003526442.1 292491003 8915853 893187..894068 1 NC_013960.1 PFAM: ATP-NAD/AcoX kinase; KEGG: noc:Noc_1190 NAD(+) kinase; ATP-NAD/AcoX kinase 894068 8915853 Nhal_0879 Nitrosococcus halophilus Nc4 ATP-NAD/AcoX kinase YP_003526442.1 893187 D 472759 CDS YP_003526443.1 292491004 8915854 894065..895768 1 NC_013960.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: noc:Noc_1191 DNA repair protein RecN; DNA repair protein RecN 895768 8915854 Nhal_0880 Nitrosococcus halophilus Nc4 DNA repair protein RecN YP_003526443.1 894065 D 472759 CDS YP_003526444.1 292491005 8915855 complement(895765..896394) 1 NC_013960.1 PFAM: hypothetical protein; KEGG: noc:Noc_1193 abortive infection protein; hypothetical protein 896394 8915855 Nhal_0881 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526444.1 895765 R 472759 CDS YP_003526445.1 292491006 8915856 complement(896431..896892) 1 NC_013960.1 PFAM: ferric-uptake regulator; KEGG: noc:Noc_1194 ferric-uptake regulator; ferric-uptake regulator 896892 8915856 Nhal_0882 Nitrosococcus halophilus Nc4 ferric-uptake regulator YP_003526445.1 896431 R 472759 CDS YP_003526446.1 292491007 8915857 897012..897581 1 NC_013960.1 PFAM: SmpA/OmlA domain protein; KEGG: noc:Noc_1195 SmpA/OmlA; SmpA/OmlA domain-containing protein 897581 8915857 Nhal_0883 Nitrosococcus halophilus Nc4 SmpA/OmlA domain-containing protein YP_003526446.1 897012 D 472759 CDS YP_003526447.1 292491008 8915858 complement(897578..897883) 1 NC_013960.1 PFAM: protein of unknown function UPF0125; KEGG: noc:Noc_1196 hypothetical protein; hypothetical protein 897883 8915858 Nhal_0884 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526447.1 897578 R 472759 CDS YP_003526448.1 292491009 8915859 complement(897885..898325) 1 NC_013960.1 PFAM: cyclase/dehydrase; KEGG: noc:Noc_1197 cyclase/dehydrase; cyclase/dehydrase 898325 8915859 Nhal_0885 Nitrosococcus halophilus Nc4 cyclase/dehydrase YP_003526448.1 897885 R 472759 CDS YP_003526449.1 292491010 8915860 complement(898343..899710) 1 NC_013960.1 PFAM: sodium:neurotransmitter symporter; KEGG: tgr:Tgr7_0963 sodium:neurotransmitter symporter; sodium:neurotransmitter symporter 899710 8915860 Nhal_0886 Nitrosococcus halophilus Nc4 sodium:neurotransmitter symporter YP_003526449.1 898343 R 472759 CDS YP_003526450.1 292491011 8915861 899821..900303 1 NC_013960.1 TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: noc:Noc_1198 SsrA-binding protein; SsrA-binding protein 900303 8915861 Nhal_0887 Nitrosococcus halophilus Nc4 SsrA-binding protein YP_003526450.1 899821 D 472759 CDS YP_003526451.1 292491012 8915864 complement(901320..901427) 1 NC_013960.1 KEGG: dde:Dde_1859 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase-like protein 901427 8915864 Nhal_0889 Nitrosococcus halophilus Nc4 DEAD/DEAH box helicase-like protein YP_003526451.1 901320 R 472759 CDS YP_003526452.1 292491013 8915865 complement(901424..901780) 1 NC_013960.1 PFAM: protein of unknown function DUF86; KEGG: hha:Hhal_0685 hypothetical protein; hypothetical protein 901780 8915865 Nhal_0890 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526452.1 901424 R 472759 CDS YP_003526453.1 292491014 8915866 complement(901773..902063) 1 NC_013960.1 PFAM: DNA polymerase beta domain protein region; KEGG: hha:Hhal_0686 DNA polymerase subunit beta; DNA polymerase beta domain-containing protein 902063 8915866 Nhal_0891 Nitrosococcus halophilus Nc4 DNA polymerase beta domain-containing protein YP_003526453.1 901773 R 472759 CDS YP_003526454.1 292491015 8915867 complement(902096..905299) 1 NC_013960.1 KEGG: sat:SYN_00497 type I restriction-modification system restriction subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase; type I site-specific deoxyribonuclease, HsdR family 905299 8915867 Nhal_0892 Nitrosococcus halophilus Nc4 type I site-specific deoxyribonuclease, HsdR family YP_003526454.1 902096 R 472759 CDS YP_003526455.1 292491016 8915868 complement(905475..905948) 1 NC_013960.1 KEGG: afr:AFE_0087 hypothetical protein; hypothetical protein 905948 8915868 Nhal_0893 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526455.1 905475 R 472759 CDS YP_003526456.1 292491017 8915869 complement(905945..906655) 1 NC_013960.1 KEGG: son:SO_4263 hypothetical protein; hypothetical protein 906655 8915869 Nhal_0894 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526456.1 905945 R 472759 CDS YP_003526457.1 292491018 8915870 complement(906673..907686) 1 NC_013960.1 KEGG: bcj:BCAL0419 hypothetical protein; hypothetical protein 907686 8915870 Nhal_0895 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526457.1 906673 R 472759 CDS YP_003526458.1 292491019 8915871 complement(907688..909325) 1 NC_013960.1 PFAM: restriction modification system DNA specificity domain; excinuclease ABC C subunit domain protein; KEGG: maq:Maqu_3382 restriction modification system DNA specificity subunit; restriction modification system DNA specificity domain-containing protein 909325 8915871 Nhal_0896 Nitrosococcus halophilus Nc4 restriction modification system DNA specificity domain-containing protein YP_003526458.1 907688 R 472759 CDS YP_003526459.1 292491020 8915872 complement(909322..910881) 1 NC_013960.1 PFAM: N-6 DNA methylase; KEGG: sat:SYN_00494 type I restriction-modification system methylation subunit; adenine-specific DNA-methyltransferase 910881 8915872 Nhal_0897 Nitrosococcus halophilus Nc4 adenine-specific DNA-methyltransferase YP_003526459.1 909322 R 472759 CDS YP_003526460.1 292491021 8915873 complement(910910..911086) 1 NC_013960.1 KEGG: aeh:Mlg_1537 hypothetical protein; hypothetical protein 911086 8915873 Nhal_0898 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526460.1 910910 R 472759 CDS YP_003526461.1 292491022 8915874 complement(911323..912027) 1 NC_013960.1 TIGRFAM: sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein; KEGG: noc:Noc_2279 sugar fermentation stimulation protein; sugar fermentation stimulation protein 912027 8915874 Nhal_0899 Nitrosococcus halophilus Nc4 sugar fermentation stimulation protein YP_003526461.1 911323 R 472759 CDS YP_003526462.1 292491023 8915875 912105..912233 1 NC_013960.1 hypothetical protein 912233 8915875 Nhal_0900 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526462.1 912105 D 472759 CDS YP_003526463.1 292491024 8915877 complement(913131..913628) 1 NC_013960.1 KEGG: noc:Noc_2278 hypothetical protein; hypothetical protein 913628 8915877 Nhal_0902 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526463.1 913131 R 472759 CDS YP_003526464.1 292491025 8915878 913798..916620 1 NC_013960.1 TIGRFAM: isoleucyl-tRNA synthetase; KEGG: noc:Noc_2277 isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase 916620 8915878 Nhal_0903 Nitrosococcus halophilus Nc4 isoleucyl-tRNA synthetase YP_003526464.1 913798 D 472759 CDS YP_003526465.1 292491026 8915879 916795..917259 1 NC_013960.1 PFAM: protein of unknown function DUF820; KEGG: noc:Noc_1566 hypothetical protein; hypothetical protein 917259 8915879 Nhal_0904 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526465.1 916795 D 472759 CDS YP_003526466.1 292491027 8915880 917267..917743 1 NC_013960.1 KEGG: noc:Noc_2276 signal peptidase II; TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; lipoprotein signal peptidase 917743 8915880 Nhal_0905 Nitrosococcus halophilus Nc4 lipoprotein signal peptidase YP_003526466.1 917267 D 472759 CDS YP_003526467.1 292491028 8915881 complement(917861..918346) 1 NC_013960.1 KEGG: noc:Noc_2275 general secretion pathway protein H; general secretion pathway protein H 918346 8915881 Nhal_0906 Nitrosococcus halophilus Nc4 general secretion pathway protein H YP_003526467.1 917861 R 472759 CDS YP_003526468.1 292491029 8915882 complement(918373..922788) 1 NC_013960.1 KEGG: noc:Noc_2274 fimbrial assembly protein; fimbrial assembly protein 922788 8915882 Nhal_0907 Nitrosococcus halophilus Nc4 fimbrial assembly protein YP_003526468.1 918373 R 472759 CDS YP_003526469.1 292491030 8915883 complement(922800..923819) 1 NC_013960.1 KEGG: noc:Noc_2272 type IV pilus assembly protein PilW; type IV pilus assembly protein PilW 923819 8915883 Nhal_0908 Nitrosococcus halophilus Nc4 type IV pilus assembly protein PilW YP_003526469.1 922800 R 472759 CDS YP_003526470.1 292491031 8915884 complement(923839..924543) 1 NC_013960.1 KEGG: noc:Noc_2273 type IV pilus assembly protein PilX; Tfp pilus assembly protein PilX-like protein 924543 8915884 Nhal_0909 Nitrosococcus halophilus Nc4 Tfp pilus assembly protein PilX-like protein YP_003526470.1 923839 R 472759 CDS YP_003526471.1 292491032 8915885 complement(924540..925565) 1 NC_013960.1 KEGG: noc:Noc_2272 type IV pilus assembly protein PilW; type IV pilus assembly protein PilW 925565 8915885 Nhal_0910 Nitrosococcus halophilus Nc4 type IV pilus assembly protein PilW YP_003526471.1 924540 R 472759 CDS YP_003526472.1 292491033 8915886 complement(925562..926077) 1 NC_013960.1 TIGRFAM: type IV pilus modification protein PilV; KEGG: noc:Noc_2271 type IV fimbrial biogenesis protein PilV; type IV pilus modification protein PilV 926077 8915886 Nhal_0911 Nitrosococcus halophilus Nc4 type IV pilus modification protein PilV YP_003526472.1 925562 R 472759 CDS YP_003526473.1 292491034 8915887 complement(926074..926643) 1 NC_013960.1 KEGG: noc:Noc_2270 type-4 fimbrial pilin related signal peptide protein; type-4 fimbrial pilin related signal peptide protein 926643 8915887 Nhal_0912 Nitrosococcus halophilus Nc4 type-4 fimbrial pilin related signal peptide protein YP_003526473.1 926074 R 472759 CDS YP_003526474.1 292491035 8915888 927006..927230 1 NC_013960.1 hypothetical protein 927230 8915888 Nhal_0913 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526474.1 927006 D 472759 CDS YP_003526475.1 292491036 8915889 927252..928535 1 NC_013960.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: afr:AFE_1023 HNH endonuclease domain protein; HNH endonuclease 928535 8915889 Nhal_0914 Nitrosococcus halophilus Nc4 HNH endonuclease YP_003526475.1 927252 D 472759 CDS YP_003526476.1 292491037 8915890 928643..929734 1 NC_013960.1 TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; KEGG: noc:Noc_2269 FAD dependent oxidoreductase; glycine oxidase ThiO 929734 8915890 Nhal_0915 Nitrosococcus halophilus Nc4 glycine oxidase ThiO YP_003526476.1 928643 D 472759 CDS YP_003526477.1 292491038 8915891 complement(929767..930912) 1 NC_013960.1 PFAM: transposase IS4 family protein; KEGG: aby:ABAYE3624 IS4 family transposase; transposase IS4 family protein 930912 8915891 Nhal_0916 Nitrosococcus halophilus Nc4 transposase IS4 family protein YP_003526477.1 929767 R 472759 CDS YP_003526478.1 292491039 8915892 complement(931354..931626) 1 NC_013960.1 PFAM: Fe(II) trafficking protein YggX; KEGG: noc:Noc_2268 hypothetical protein; Fe(II) trafficking protein YggX 931626 8915892 Nhal_0917 Nitrosococcus halophilus Nc4 Fe(II) trafficking protein YggX YP_003526478.1 931354 R 472759 CDS YP_003526479.1 292491040 8915893 complement(931630..932694) 1 NC_013960.1 KEGG: noc:Noc_2267 A/G-specific adenine glycosylase MutY; TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; A/G-specific adenine glycosylase 932694 8915893 Nhal_0918 Nitrosococcus halophilus Nc4 A/G-specific adenine glycosylase YP_003526479.1 931630 R 472759 CDS YP_003526480.1 292491041 8915894 complement(932691..933200) 1 NC_013960.1 KEGG: noc:Noc_2266 hypothetical protein; hypothetical protein 933200 8915894 Nhal_0919 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526480.1 932691 R 472759 CDS YP_003526481.1 292491042 8915895 complement(933223..935646) 1 NC_013960.1 PFAM: AsmA family protein; KEGG: noc:Noc_2265 hypothetical protein; AsmA family protein 935646 8915895 Nhal_0920 Nitrosococcus halophilus Nc4 AsmA family protein YP_003526481.1 933223 R 472759 CDS YP_003526482.1 292491043 8915896 complement(935652..936770) 1 NC_013960.1 KEGG: noc:Noc_2264 hypothetical protein; hypothetical protein 936770 8915896 Nhal_0921 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526482.1 935652 R 472759 CDS YP_003526483.1 292491044 8915897 complement(936853..938175) 1 NC_013960.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: noc:Noc_2263 hypothetical protein; hypothetical protein 938175 8915897 Nhal_0922 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526483.1 936853 R 472759 CDS YP_003526484.1 292491045 8915898 complement(938325..939164) 1 NC_013960.1 PFAM: cytochrome C assembly protein; KEGG: noc:Noc_2262 cytochrome C assembly protein; cytochrome C assembly protein 939164 8915898 Nhal_0923 Nitrosococcus halophilus Nc4 cytochrome C assembly protein YP_003526484.1 938325 R 472759 CDS YP_003526485.1 292491046 8915899 939389..940747 1 NC_013960.1 KEGG: noc:Noc_2261 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA; signal recognition particle protein 940747 8915899 Nhal_0924 Nitrosococcus halophilus Nc4 signal recognition particle protein YP_003526485.1 939389 D 472759 CDS YP_003526486.1 292491047 8915900 940832..941074 1 NC_013960.1 TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: noc:Noc_2260 ribosomal protein S16; 30S ribosomal protein S16 941074 8915900 Nhal_0925 Nitrosococcus halophilus Nc4 30S ribosomal protein S16 YP_003526486.1 940832 D 472759 CDS YP_003526487.1 292491048 8915901 941091..941618 1 NC_013960.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: noc:Noc_2259 16S rRNA processing protein RimM; 16S rRNA processing protein RimM 941618 8915901 Nhal_0926 Nitrosococcus halophilus Nc4 16S rRNA processing protein RimM YP_003526487.1 941091 D 472759 CDS YP_003526488.1 292491049 8915902 941649..942407 1 NC_013960.1 KEGG: noc:Noc_2258 tRNA (guanine-N(1)-)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-N1)-methyltransferase 942407 8915902 Nhal_0927 Nitrosococcus halophilus Nc4 tRNA (guanine-N1)-methyltransferase YP_003526488.1 941649 D 472759 CDS YP_003526489.1 292491050 8915903 942404..942751 1 NC_013960.1 TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; KEGG: noc:Noc_2257 50S ribosomal protein L19; 50S ribosomal protein L19 942751 8915903 Nhal_0928 Nitrosococcus halophilus Nc4 50S ribosomal protein L19 YP_003526489.1 942404 D 472759 CDS YP_003526490.1 292491051 8915904 942836..943327 1 NC_013960.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: noc:Noc_2256 methylated-DNA-(protein)-cysteine S-methyltransferase; methylated-DNA/protein-cysteine methyltransferase 943327 8915904 Nhal_0929 Nitrosococcus halophilus Nc4 methylated-DNA/protein-cysteine methyltransferase YP_003526490.1 942836 D 472759 CDS YP_003526491.1 292491052 8915905 943311..944231 1 NC_013960.1 TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase; KEGG: noc:Noc_2255 tyrosine recombinase XerD; tyrosine recombinase XerD 944231 8915905 Nhal_0930 Nitrosococcus halophilus Nc4 tyrosine recombinase XerD YP_003526491.1 943311 D 472759 CDS YP_003526492.1 292491053 8915906 944312..944794 1 NC_013960.1 PFAM: protein of unknown function DUF520; KEGG: noc:Noc_2254 nucleotide-binding protein; hypothetical protein 944794 8915906 Nhal_0931 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526492.1 944312 D 472759 CDS YP_003526493.1 292491054 8915907 944809..945546 1 NC_013960.1 KEGG: noc:Noc_2253 thiol-disulfide interchange protein DsbC; thiol-disulfide interchange protein DsbC 945546 8915907 Nhal_0932 Nitrosococcus halophilus Nc4 thiol-disulfide interchange protein DsbC YP_003526493.1 944809 D 472759 CDS YP_003526494.1 292491055 8915908 complement(945557..946312) 1 NC_013960.1 TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase; KEGG: noc:Noc_2252 UDP-2,3-diacylglucosamine hydrolase; UDP-2,3-diacylglucosamine hydrolase 946312 8915908 Nhal_0933 Nitrosococcus halophilus Nc4 UDP-2,3-diacylglucosamine hydrolase YP_003526494.1 945557 R 472759 CDS YP_003526495.1 292491056 8915909 complement(946328..946921) 1 NC_013960.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: noc:Noc_2251 peptidylprolyl isomerase; cyclophilin type peptidyl-prolyl cis-trans isomerase 946921 8915909 Nhal_0934 Nitrosococcus halophilus Nc4 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_003526495.1 946328 R 472759 CDS YP_003526496.1 292491057 8915910 947070..948497 1 NC_013960.1 TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: noc:Noc_2250 glutamyl-tRNA synthetase; glutamyl-tRNA synthetase 948497 8915910 Nhal_0935 Nitrosococcus halophilus Nc4 glutamyl-tRNA synthetase YP_003526496.1 947070 D 472759 CDS YP_003526497.1 292491058 8915911 948605..950059 1 NC_013960.1 KEGG: noc:Noc_2249 cysteine--tRNA ligase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); cysteinyl-tRNA synthetase 950059 8915911 Nhal_0936 Nitrosococcus halophilus Nc4 cysteinyl-tRNA synthetase YP_003526497.1 948605 D 472759 CDS YP_003526498.1 292491059 8915912 complement(950230..951084) 1 NC_013960.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: noc:Noc_2248 methylenetetrahydrofolate dehydrogenase (NADP+); methylenetetrahydrofolate dehydrogenase 951084 8915912 Nhal_0937 Nitrosococcus halophilus Nc4 methylenetetrahydrofolate dehydrogenase YP_003526498.1 950230 R 472759 CDS YP_003526499.1 292491060 8915916 952145..953368 1 NC_013960.1 PFAM: transposase mutator type; KEGG: son:SO_0708 transposase mutator family protein; transposase mutator type 953368 8915916 Nhal_0939 Nitrosococcus halophilus Nc4 transposase mutator type YP_003526499.1 952145 D 472759 CDS YP_003526500.1 292491061 8915917 953706..953972 1 NC_013960.1 KEGG: noc:Noc_2241 hypothetical protein; hypothetical protein 953972 8915917 Nhal_0940 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526500.1 953706 D 472759 CDS YP_003526501.1 292491062 8915918 953969..954178 1 NC_013960.1 PFAM: protein of unknown function UPF0150; KEGG: noc:Noc_2242 hypothetical protein; hypothetical protein 954178 8915918 Nhal_0941 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526501.1 953969 D 472759 CDS YP_003526502.1 292491063 8915919 954193..954561 1 NC_013960.1 KEGG: geo:Geob_1730 hypothetical protein; hypothetical protein 954561 8915919 Nhal_0942 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526502.1 954193 D 472759 CDS YP_003526503.1 292491064 8915920 954565..954867 1 NC_013960.1 KEGG: rpc:RPC_4286 hypothetical protein; hypothetical protein 954867 8915920 Nhal_0943 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526503.1 954565 D 472759 CDS YP_003526504.1 292491065 8915921 954864..955112 1 NC_013960.1 KEGG: noc:Noc_0411 CopG family protein; CopG family protein 955112 8915921 Nhal_0944 Nitrosococcus halophilus Nc4 CopG family protein YP_003526504.1 954864 D 472759 CDS YP_003526505.1 292491066 8915922 955129..955329 1 NC_013960.1 PFAM: HicB family protein; KEGG: glo:Glov_0059 HicB family protein; HicB family protein 955329 8915922 Nhal_0945 Nitrosococcus halophilus Nc4 HicB family protein YP_003526505.1 955129 D 472759 CDS YP_003526506.1 292491067 8915923 complement(955388..956539) 1 NC_013960.1 KEGG: avi:Avi_3043 hypothetical protein; hypothetical protein 956539 8915923 Nhal_0946 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526506.1 955388 R 472759 CDS YP_003526507.1 292491068 8915924 complement(956536..957033) 1 NC_013960.1 KEGG: avi:Avi_3042 hypothetical protein; hypothetical protein 957033 8915924 Nhal_0947 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526507.1 956536 R 472759 CDS YP_003526508.1 292491069 8915925 complement(957297..957524) 1 NC_013960.1 hypothetical protein 957524 8915925 Nhal_0948 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526508.1 957297 R 472759 CDS YP_003526509.1 292491070 8915926 complement(957526..958287) 1 NC_013960.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: hit:NTHI1517 hypothetical protein; hypothetical protein 958287 8915926 Nhal_0949 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526509.1 957526 R 472759 CDS YP_003526510.1 292491071 8915927 958373..958618 1 NC_013960.1 KEGG: pmr:PMI2424 phage regulatory protein; hypothetical protein 958618 8915927 Nhal_0950 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526510.1 958373 D 472759 CDS YP_003526511.1 292491072 8915928 958615..958803 1 NC_013960.1 hypothetical protein 958803 8915928 Nhal_0951 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526511.1 958615 D 472759 CDS YP_003526512.1 292491073 8915929 958800..959072 1 NC_013960.1 KEGG: reu:Reut_A2382 hypothetical protein; hypothetical protein 959072 8915929 Nhal_0952 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526512.1 958800 D 472759 CDS YP_003526513.1 292491074 8915930 959269..959493 1 NC_013960.1 KEGG: lhk:LHK_01733 KilA-N domain protein; KilA-N domain-containing protein 959493 8915930 Nhal_0953 Nitrosococcus halophilus Nc4 KilA-N domain-containing protein YP_003526513.1 959269 D 472759 CDS YP_003526514.1 292491075 8915931 959556..960779 1 NC_013960.1 PFAM: transposase mutator type; KEGG: son:SO_0708 transposase mutator family protein; transposase mutator type 960779 8915931 Nhal_0954 Nitrosococcus halophilus Nc4 transposase mutator type YP_003526514.1 959556 D 472759 CDS YP_003526515.1 292491076 8915932 complement(960740..961045) 1 NC_013960.1 KEGG: noc:Noc_1602 hypothetical protein; hypothetical protein 961045 8915932 Nhal_0955 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526515.1 960740 R 472759 CDS YP_003526516.1 292491077 8915935 complement(961875..962837) 1 NC_013960.1 PFAM: integrase family protein; KEGG: slo:Shew_0995 phage integrase family protein; integrase family protein 962837 8915935 Nhal_0956 Nitrosococcus halophilus Nc4 integrase family protein YP_003526516.1 961875 R 472759 CDS YP_003526517.1 292491078 8915936 complement(962821..963039) 1 NC_013960.1 KEGG: sbn:Sbal195_3508 hypothetical protein; hypothetical protein 963039 8915936 Nhal_0957 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526517.1 962821 R 472759 CDS YP_003526518.1 292491079 8915937 complement(963096..963917) 1 NC_013960.1 KEGG: aav:Aave_1743 hypothetical protein; hypothetical protein 963917 8915937 Nhal_0958 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526518.1 963096 R 472759 CDS YP_003526519.1 292491080 8915938 complement(963921..964265) 1 NC_013960.1 KEGG: eba:ebB1 hypothetical protein; hypothetical protein 964265 8915938 Nhal_0959 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526519.1 963921 R 472759 CDS YP_003526520.1 292491081 8915939 complement(964280..964486) 1 NC_013960.1 hypothetical protein 964486 8915939 Nhal_0960 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526520.1 964280 R 472759 CDS YP_003526521.1 292491082 8915940 complement(964483..964668) 1 NC_013960.1 hypothetical protein 964668 8915940 Nhal_0961 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526521.1 964483 R 472759 CDS YP_003526522.1 292491083 8915941 complement(964665..964973) 1 NC_013960.1 KEGG: mch:Mchl_5565 hypothetical protein; hypothetical protein 964973 8915941 Nhal_0962 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526522.1 964665 R 472759 CDS YP_003526523.1 292491084 8915942 complement(964987..965682) 1 NC_013960.1 KEGG: eba:ebA7287 hypothetical protein; hypothetical protein 965682 8915942 Nhal_0963 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526523.1 964987 R 472759 CDS YP_003526524.1 292491085 8915943 complement(965679..966296) 1 NC_013960.1 KEGG: vei:Veis_3656 hypothetical protein; hypothetical protein 966296 8915943 Nhal_0964 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526524.1 965679 R 472759 CDS YP_003526525.1 292491086 8915944 complement(966293..966511) 1 NC_013960.1 hypothetical protein 966511 8915944 Nhal_0965 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526525.1 966293 R 472759 CDS YP_003526526.1 292491087 8915945 complement(966588..966983) 1 NC_013960.1 hypothetical protein 966983 8915945 Nhal_0966 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526526.1 966588 R 472759 CDS YP_003526527.1 292491088 8915946 complement(966980..967138) 1 NC_013960.1 hypothetical protein 967138 8915946 Nhal_0967 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526527.1 966980 R 472759 CDS YP_003526528.1 292491089 8915947 967434..967721 1 NC_013960.1 PFAM: protein of unknown function DUF497; KEGG: bpy:Bphyt_3748 protein of unknown function DUF497; hypothetical protein 967721 8915947 Nhal_0968 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526528.1 967434 D 472759 CDS YP_003526529.1 292491090 8915948 967693..968019 1 NC_013960.1 KEGG: gur:Gura_1489 hypothetical protein; hypothetical protein 968019 8915948 Nhal_0969 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526529.1 967693 D 472759 CDS YP_003526530.1 292491091 8915949 complement(968209..968442) 1 NC_013960.1 hypothetical protein 968442 8915949 Nhal_0970 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526530.1 968209 R 472759 CDS YP_003526531.1 292491092 8915950 complement(968426..969031) 1 NC_013960.1 PFAM: CI repressor; KEGG: yen:YE1835 DNA-binding protein; CI repressor 969031 8915950 Nhal_0971 Nitrosococcus halophilus Nc4 CI repressor YP_003526531.1 968426 R 472759 CDS YP_003526532.1 292491093 8915951 969117..969335 1 NC_013960.1 KEGG: shw:Sputw3181_1182 hypothetical protein; hypothetical protein 969335 8915951 Nhal_0972 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526532.1 969117 D 472759 CDS YP_003526533.1 292491094 8915952 969332..969529 1 NC_013960.1 hypothetical protein 969529 8915952 Nhal_0973 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526533.1 969332 D 472759 CDS YP_003526534.1 292491095 8915953 969526..969798 1 NC_013960.1 hypothetical protein 969798 8915953 Nhal_0974 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526534.1 969526 D 472759 CDS YP_003526535.1 292491096 8915954 969908..970255 1 NC_013960.1 hypothetical protein 970255 8915954 Nhal_0975 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526535.1 969908 D 472759 CDS YP_003526536.1 292491097 8915955 970259..970426 1 NC_013960.1 KEGG: cvi:CV_3858 hypothetical protein; hypothetical protein 970426 8915955 Nhal_0976 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526536.1 970259 D 472759 CDS YP_003526537.1 292491098 8915956 970429..970554 1 NC_013960.1 hypothetical protein 970554 8915956 Nhal_0977 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526537.1 970429 D 472759 CDS YP_003526538.1 292491099 8915957 970730..973162 1 NC_013960.1 KEGG: eba:ebA7287 hypothetical protein; hypothetical protein 973162 8915957 Nhal_0978 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526538.1 970730 D 472759 CDS YP_003526539.1 292491100 8915958 973163..973402 1 NC_013960.1 hypothetical protein 973402 8915958 Nhal_0979 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526539.1 973163 D 472759 CDS YP_003526540.1 292491101 8915959 973484..973681 1 NC_013960.1 KEGG: dvl:Dvul_1677 TraR/DksA family transcriptional regulator; TraR/DksA family transcriptional regulator 973681 8915959 Nhal_0980 Nitrosococcus halophilus Nc4 TraR/DksA family transcriptional regulator YP_003526540.1 973484 D 472759 CDS YP_003526541.1 292491102 8915960 973725..974363 1 NC_013960.1 KEGG: eba:ebA7281 hypothetical protein; hypothetical protein 974363 8915960 Nhal_0981 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526541.1 973725 D 472759 CDS YP_003526542.1 292491103 8915961 974370..975425 1 NC_013960.1 PFAM: BRO domain protein; KEGG: ngk:NGK_2037 phage associated protein; BRO domain-containing protein 975425 8915961 Nhal_0982 Nitrosococcus halophilus Nc4 BRO domain-containing protein YP_003526542.1 974370 D 472759 CDS YP_003526543.1 292491104 8915962 975534..976484 1 NC_013960.1 PFAM: BRO domain protein; KEGG: bav:BAV1428 antirepressor; BRO domain-containing protein 976484 8915962 Nhal_0983 Nitrosococcus halophilus Nc4 BRO domain-containing protein YP_003526543.1 975534 D 472759 CDS YP_003526544.1 292491105 8915963 976486..978444 1 NC_013960.1 PFAM: terminase GpA; KEGG: eba:ebA7278 terminase (bacteriophage), large subunit; terminase GpA 978444 8915963 Nhal_0984 Nitrosococcus halophilus Nc4 terminase GpA YP_003526544.1 976486 D 472759 CDS YP_003526545.1 292491106 8915964 978453..978734 1 NC_013960.1 KEGG: dac:Daci_3404 hypothetical protein; hypothetical protein 978734 8915964 Nhal_0985 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526545.1 978453 D 472759 CDS YP_003526546.1 292491107 8915965 978765..979052 1 NC_013960.1 KEGG: pna:Pnap_2256 hypothetical protein; hypothetical protein 979052 8915965 Nhal_0986 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526546.1 978765 D 472759 CDS YP_003526547.1 292491108 8915966 979342..979527 1 NC_013960.1 hypothetical protein 979527 8915966 Nhal_0987 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526547.1 979342 D 472759 CDS YP_003526548.1 292491109 8915967 979556..980101 1 NC_013960.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dac:Daci_1863 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 980101 8915967 Nhal_0988 Nitrosococcus halophilus Nc4 GCN5-like N-acetyltransferase YP_003526548.1 979556 D 472759 CDS YP_003526549.1 292491110 8915968 980164..980523 1 NC_013960.1 KEGG: xfa:XF2527 hypothetical protein; hypothetical protein 980523 8915968 Nhal_0989 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526549.1 980164 D 472759 CDS YP_003526550.1 292491111 8915969 complement(980715..981590) 1 NC_013960.1 PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: abc:ACICU_00863 site-specific DNA methylase; D12 class N6 adenine-specific DNA methyltransferase 981590 8915969 Nhal_0990 Nitrosococcus halophilus Nc4 D12 class N6 adenine-specific DNA methyltransferase YP_003526550.1 980715 R 472759 CDS YP_003526551.1 292491112 8915970 complement(981615..983114) 1 NC_013960.1 KEGG: ecm:EcSMS35_4320 hypothetical protein; hypothetical protein 983114 8915970 Nhal_0991 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526551.1 981615 R 472759 CDS YP_003526552.1 292491113 8915971 983402..984463 1 NC_013960.1 KEGG: ppw:PputW619_3960 hypothetical protein; hypothetical protein 984463 8915971 Nhal_0992 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526552.1 983402 D 472759 CDS YP_003526553.1 292491114 8915972 984553..984993 1 NC_013960.1 PFAM: protein of unknown function DUF29; KEGG: noc:Noc_0766 hypothetical protein; hypothetical protein 984993 8915972 Nhal_0993 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526553.1 984553 D 472759 CDS YP_003526554.1 292491115 8915973 985121..985405 1 NC_013960.1 KEGG: pna:Pnap_2255 hypothetical protein; hypothetical protein 985405 8915973 Nhal_0994 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526554.1 985121 D 472759 CDS YP_003526555.1 292491116 8915974 985405..985821 1 NC_013960.1 PFAM: glycoside hydrolase family 24; KEGG: cbc:CbuK_0811 lysozyme; glycoside hydrolase family protein 985821 8915974 Nhal_0995 Nitrosococcus halophilus Nc4 glycoside hydrolase family protein YP_003526555.1 985405 D 472759 CDS YP_003526556.1 292491117 8915975 985818..987296 1 NC_013960.1 TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; KEGG: pna:Pnap_2254 lambda family phage portal protein; phage portal protein, lambda family 987296 8915975 Nhal_0996 Nitrosococcus halophilus Nc4 phage portal protein, lambda family YP_003526556.1 985818 D 472759 CDS YP_003526557.1 292491118 8915976 987302..989659 1 NC_013960.1 PFAM: peptidase S14 ClpP; KEGG: xfa:XF0511 hypothetical protein; peptidase S14 ClpP 989659 8915976 Nhal_0997 Nitrosococcus halophilus Nc4 peptidase S14 ClpP YP_003526557.1 987302 D 472759 CDS YP_003526558.1 292491119 8915977 989666..990079 1 NC_013960.1 KEGG: pnu:Pnuc_1119 hypothetical protein; hypothetical protein 990079 8915977 Nhal_0998 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526558.1 989666 D 472759 CDS YP_003526559.1 292491120 8915978 990085..990447 1 NC_013960.1 KEGG: pna:Pnap_2252 RecA/RadA recombinase; RecA/RadA recombinase 990447 8915978 Nhal_0999 Nitrosococcus halophilus Nc4 RecA/RadA recombinase YP_003526559.1 990085 D 472759 CDS YP_003526560.1 292491121 8915979 990447..990752 1 NC_013960.1 hypothetical protein 990752 8915979 Nhal_1000 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526560.1 990447 D 472759 CDS YP_003526561.1 292491122 8915980 990745..991044 1 NC_013960.1 hypothetical protein 991044 8915980 Nhal_1001 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526561.1 990745 D 472759 CDS YP_003526562.1 292491123 8915981 991044..991655 1 NC_013960.1 KEGG: dac:Daci_3441 hypothetical protein; hypothetical protein 991655 8915981 Nhal_1002 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526562.1 991044 D 472759 CDS YP_003526563.1 292491124 8915982 991652..992092 1 NC_013960.1 hypothetical protein 992092 8915982 Nhal_1003 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526563.1 991652 D 472759 CDS YP_003526564.1 292491125 8915983 992149..992310 1 NC_013960.1 hypothetical protein 992310 8915983 Nhal_1004 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526564.1 992149 D 472759 CDS YP_003526565.1 292491126 8915984 992383..993129 1 NC_013960.1 KEGG: dac:Daci_3443 hypothetical protein; hypothetical protein 993129 8915984 Nhal_1005 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526565.1 992383 D 472759 CDS YP_003526566.1 292491127 8915985 993160..996453 1 NC_013960.1 KEGG: son:SO_0680 hypothetical protein; hypothetical protein 996453 8915985 Nhal_1006 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526566.1 993160 D 472759 CDS YP_003526567.1 292491128 8915986 complement(996470..996802) 1 NC_013960.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: dvm:DvMF_1635 transcriptional regulator, XRE family; hypothetical protein 996802 8915986 Nhal_1007 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526567.1 996470 R 472759 CDS YP_003526568.1 292491129 8915987 complement(996786..997040) 1 NC_013960.1 KEGG: bav:BAV1312A phage protein; phage protein 997040 8915987 Nhal_1008 Nitrosococcus halophilus Nc4 phage protein YP_003526568.1 996786 R 472759 CDS YP_003526569.1 292491130 8915988 997110..997493 1 NC_013960.1 KEGG: mca:MCA2671 hypothetical protein; hypothetical protein 997493 8915988 Nhal_1009 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526569.1 997110 D 472759 CDS YP_003526570.1 292491131 8915989 997494..1000835 1 NC_013960.1 KEGG: dia:Dtpsy_3195 hypothetical protein; hypothetical protein 1000835 8915989 Nhal_1010 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526570.1 997494 D 472759 CDS YP_003526571.1 292491132 8915990 1000832..1001926 1 NC_013960.1 KEGG: mca:MCA2673 hypothetical protein; hypothetical protein 1001926 8915990 Nhal_1011 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526571.1 1000832 D 472759 CDS YP_003526572.1 292491133 8915991 1001923..1002213 1 NC_013960.1 KEGG: rso:RSc0877 hypothetical protein; hypothetical protein 1002213 8915991 Nhal_1012 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526572.1 1001923 D 472759 CDS YP_003526573.1 292491134 8915992 1002210..1002599 1 NC_013960.1 KEGG: mca:MCA2675 hypothetical protein; hypothetical protein 1002599 8915992 Nhal_1013 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526573.1 1002210 D 472759 CDS YP_003526574.1 292491135 8915993 1002603..1004579 1 NC_013960.1 KEGG: mca:MCA2676 hypothetical protein; hypothetical protein 1004579 8915993 Nhal_1014 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526574.1 1002603 D 472759 CDS YP_003526575.1 292491136 8915994 1004576..1004803 1 NC_013960.1 KEGG: aav:Aave_4092 hypothetical protein; hypothetical protein 1004803 8915994 Nhal_1015 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526575.1 1004576 D 472759 CDS YP_003526576.1 292491137 8915995 complement(1004888..1005184) 1 NC_013960.1 hypothetical protein 1005184 8915995 Nhal_1016 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526576.1 1004888 R 472759 CDS YP_003526577.1 292491138 8915996 complement(1005207..1005716) 1 NC_013960.1 KEGG: shm:Shewmr7_2590 hypothetical protein; hypothetical protein 1005716 8915996 Nhal_1017 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526577.1 1005207 R 472759 CDS YP_003526578.1 292491139 8915997 complement(1005821..1006843) 1 NC_013960.1 KEGG: pmr:PMI0512 phage antirepressor protein; hypothetical protein 1006843 8915997 Nhal_1018 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526578.1 1005821 R 472759 CDS YP_003526579.1 292491140 8915998 1007415..1007585 1 NC_013960.1 KEGG: hch:HCH_06383 transposase; transposase 1007585 8915998 Nhal_1019 Nitrosococcus halophilus Nc4 transposase YP_003526579.1 1007415 D 472759 CDS YP_003526580.1 292491141 8915999 complement(1007627..1008760) 1 NC_013960.1 KEGG: vsp:VS_1370 conserved hypothetical protein; endonuclease; hypothetical protein 1008760 8915999 Nhal_1020 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526580.1 1007627 R 472759 CDS YP_003526581.1 292491142 8916000 complement(1008760..1009473) 1 NC_013960.1 KEGG: vsp:VS_1368 hypothetical protein; hypothetical protein 1009473 8916000 Nhal_1021 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526581.1 1008760 R 472759 CDS YP_003526582.1 292491143 8916001 complement(1009482..1011302) 1 NC_013960.1 KEGG: vsp:VS_1367 hypothetical protein; hypothetical protein 1011302 8916001 Nhal_1022 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526582.1 1009482 R 472759 CDS YP_003526583.1 292491144 8916002 complement(1011281..1011667) 1 NC_013960.1 KEGG: pmr:PMI2479 plasmid-related protein; hypothetical protein 1011667 8916002 Nhal_1023 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526583.1 1011281 R 472759 CDS YP_003526584.1 292491145 8916003 complement(1011835..1012608) 1 NC_013960.1 KEGG: bja:bll1929 hypothetical protein; hypothetical protein 1012608 8916003 Nhal_1024 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526584.1 1011835 R 472759 CDS YP_003526585.1 292491146 8916004 complement(1012590..1012718) 1 NC_013960.1 hypothetical protein 1012718 8916004 Nhal_1025 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526585.1 1012590 R 472759 CDS YP_003526586.1 292491147 8916005 complement(1012715..1013242) 1 NC_013960.1 TIGRFAM: carbon storage regulator; PFAM: carbon storage regulator; KEGG: cbg:CbuG_0954 carbon storage regulator; carbon storage regulator 1013242 8916005 Nhal_1026 Nitrosococcus halophilus Nc4 carbon storage regulator YP_003526586.1 1012715 R 472759 CDS YP_003526587.1 292491148 8916006 complement(1013666..1013881) 1 NC_013960.1 PFAM: protein of unknown function UPF0150; KEGG: noc:Noc_0452 hypothetical protein; hypothetical protein 1013881 8916006 Nhal_1027 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526587.1 1013666 R 472759 CDS YP_003526588.1 292491149 8916007 complement(1013892..1014077) 1 NC_013960.1 PFAM: YcfA family protein; KEGG: mpo:Mpop_3128 YcfA family protein; YcfA family protein 1014077 8916007 Nhal_1028 Nitrosococcus halophilus Nc4 YcfA family protein YP_003526588.1 1013892 R 472759 CDS YP_003526589.1 292491150 8916008 complement(1014284..1015216) 1 NC_013960.1 KEGG: rle:RL1102 hypothetical protein; hypothetical protein 1015216 8916008 Nhal_1029 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526589.1 1014284 R 472759 CDS YP_003526590.1 292491151 8916009 complement(1015316..1016038) 1 NC_013960.1 KEGG: hch:HCH_05640 hypothetical protein; hypothetical protein 1016038 8916009 Nhal_1030 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526590.1 1015316 R 472759 CDS YP_003526591.1 292491152 8916010 complement(1017766..1019913) 1 NC_013960.1 TIGRFAM: phage/plasmid primase, P4 family; PFAM: Bifunctional DNA primase/polymerase ; primase P4 ; Primase 1; KEGG: bcn:Bcen_0448 phage-plasmid primase P4-like; phage/plasmid primase, P4 family 1019913 8916010 Nhal_1031 Nitrosococcus halophilus Nc4 phage/plasmid primase, P4 family YP_003526591.1 1017766 R 472759 CDS YP_003526592.1 292491153 8916011 complement(1019931..1020152) 1 NC_013960.1 PFAM: prophage CP4-57 regulator; KEGG: avn:Avin_17010 prophage CP4-57 regulatory, AlpA-like protein; prophage CP4-57 regulator 1020152 8916011 Nhal_1032 Nitrosococcus halophilus Nc4 prophage CP4-57 regulator YP_003526592.1 1019931 R 472759 CDS YP_003526593.1 292491154 8916012 complement(1020308..1021048) 1 NC_013960.1 hypothetical protein 1021048 8916012 Nhal_1033 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526593.1 1020308 R 472759 CDS YP_003526594.1 292491155 8916013 complement(1021220..1021420) 1 NC_013960.1 KEGG: eba:p1B34 hypothetical protein; hypothetical protein 1021420 8916013 Nhal_1034 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526594.1 1021220 R 472759 CDS YP_003526595.1 292491156 8916014 complement(1021417..1021689) 1 NC_013960.1 KEGG: eba:p1B35 hypothetical protein; hypothetical protein 1021689 8916014 Nhal_1035 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526595.1 1021417 R 472759 CDS YP_003526596.1 292491157 8916015 complement(1021686..1022888) 1 NC_013960.1 PFAM: integrase family protein; KEGG: ppd:Ppro_3121 phage integrase family protein; integrase family protein 1022888 8916015 Nhal_1036 Nitrosococcus halophilus Nc4 integrase family protein YP_003526596.1 1021686 R 472759 CDS YP_003526597.1 292491158 8916017 complement(1023112..1023249) 1 NC_013960.1 hypothetical protein 1023249 8916017 Nhal_1037 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526597.1 1023112 R 472759 CDS YP_003526598.1 292491159 8916018 complement(1023493..1023930) 1 NC_013960.1 PFAM: protein of unknown function DUF29; KEGG: noc:Noc_0766 hypothetical protein; hypothetical protein 1023930 8916018 Nhal_1038 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526598.1 1023493 R 472759 CDS YP_003526599.1 292491160 8916019 1024670..1026889 1 NC_013960.1 TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: tau:Tola_1180 type I restriction-modification system, M subunit; type I restriction-modification system, M subunit 1026889 8916019 Nhal_1039 Nitrosococcus halophilus Nc4 type I restriction-modification system, M subunit YP_003526599.1 1024670 D 472759 CDS YP_003526600.1 292491161 8916020 1026901..1028121 1 NC_013960.1 PFAM: restriction modification system DNA specificity domain; KEGG: pla:Plav_2346 restriction modification system DNA specificity subunit; restriction modification system DNA specificity domain-containing protein 1028121 8916020 Nhal_1040 Nitrosococcus halophilus Nc4 restriction modification system DNA specificity domain-containing protein YP_003526600.1 1026901 D 472759 CDS YP_003526601.1 292491162 8916021 1028118..1028825 1 NC_013960.1 KEGG: son:SO_4263 hypothetical protein; hypothetical protein 1028825 8916021 Nhal_1041 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526601.1 1028118 D 472759 CDS YP_003526602.1 292491163 8916022 1028822..1029307 1 NC_013960.1 KEGG: hso:HS_0557 phage P1-related protein; phage P1-like protein 1029307 8916022 Nhal_1042 Nitrosococcus halophilus Nc4 phage P1-like protein YP_003526602.1 1028822 D 472759 CDS YP_003526603.1 292491164 8916023 1029594..1030049 1 NC_013960.1 KEGG: noc:Noc_0405 hypothetical protein; hypothetical protein 1030049 8916023 Nhal_1043 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526603.1 1029594 D 472759 CDS YP_003526604.1 292491165 8916025 1033242..1033973 1 NC_013960.1 PFAM: protein of unknown function DUF45; KEGG: bid:Bind_2675 hypothetical protein; hypothetical protein 1033973 8916025 Nhal_1045 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526604.1 1033242 D 472759 CDS YP_003526605.1 292491166 8916026 1034056..1034331 1 NC_013960.1 KEGG: glo:Glov_2251 HicA protein; HicA protein 1034331 8916026 Nhal_1046 Nitrosococcus halophilus Nc4 HicA protein YP_003526605.1 1034056 D 472759 CDS YP_003526606.1 292491167 8916027 1034335..1034679 1 NC_013960.1 PFAM: HicB family protein; KEGG: glo:Glov_2250 HicB family protein; HicB family protein 1034679 8916027 Nhal_1047 Nitrosococcus halophilus Nc4 HicB family protein YP_003526606.1 1034335 D 472759 CDS YP_003526607.1 292491168 8916028 complement(1034725..1037175) 1 NC_013960.1 PFAM: peptidase S16; KEGG: rfr:Rfer_0831 ATP-dependent protease; peptidase S16 1037175 8916028 Nhal_1048 Nitrosococcus halophilus Nc4 peptidase S16 YP_003526607.1 1034725 R 472759 CDS YP_003526608.1 292491169 8916029 complement(1037773..1038138) 1 NC_013960.1 KEGG: cps:CPS_3528 hypothetical protein; hypothetical protein 1038138 8916029 Nhal_1049 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526608.1 1037773 R 472759 CDS YP_003526609.1 292491170 8916030 1038570..1038800 1 NC_013960.1 KEGG: Strc; stereocilin; hypothetical protein 1038800 8916030 Nhal_1050 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526609.1 1038570 D 472759 CDS YP_003526610.1 292491171 8916031 1038862..1039065 1 NC_013960.1 hypothetical protein 1039065 8916031 Nhal_1051 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526610.1 1038862 D 472759 CDS YP_003526611.1 292491172 8916032 1039212..1039829 1 NC_013960.1 TIGRFAM: alpha-ribazole phosphatase; PFAM: phosphoglycerate mutase; KEGG: noc:Noc_1928 phosphoglycerate/bisphosphoglycerate mutase; alpha-ribazole phosphatase 1039829 8916032 Nhal_1052 Nitrosococcus halophilus Nc4 alpha-ribazole phosphatase YP_003526611.1 1039212 D 472759 CDS YP_003526612.1 292491173 8916033 complement(1040008..1040775) 1 NC_013960.1 KEGG: noc:Noc_1927 hypothetical protein; hypothetical protein 1040775 8916033 Nhal_1053 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526612.1 1040008 R 472759 CDS YP_003526613.1 292491174 8916034 1041188..1043119 1 NC_013960.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: noc:Noc_1925 TonB-dependent receptor; TonB-dependent receptor 1043119 8916034 Nhal_1054 Nitrosococcus halophilus Nc4 TonB-dependent receptor YP_003526613.1 1041188 D 472759 CDS YP_003526614.1 292491175 8916035 1043385..1044014 1 NC_013960.1 KEGG: pla:Plav_1287 hypothetical protein; hypothetical protein 1044014 8916035 Nhal_1055 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526614.1 1043385 D 472759 CDS YP_003526615.1 292491176 8916036 1044098..1045204 1 NC_013960.1 KEGG: noc:Noc_1545 ferrochelatase; TIGRFAM: ferrochelatase; PFAM: ferrochelatase; ferrochelatase 1045204 8916036 Nhal_1056 Nitrosococcus halophilus Nc4 ferrochelatase YP_003526615.1 1044098 D 472759 CDS YP_003526616.1 292491177 8916037 complement(1045232..1045639) 1 NC_013960.1 PFAM: protein of unknown function UPF0047; KEGG: sat:SYN_00473 cytoplasmic protein; hypothetical protein 1045639 8916037 Nhal_1057 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526616.1 1045232 R 472759 CDS YP_003526617.1 292491178 8916038 1045714..1046523 1 NC_013960.1 PFAM: peptidase T2 asparaginase 2; KEGG: tgr:Tgr7_0555 peptidase T2 asparaginase 2; peptidase T2 asparaginase 2 1046523 8916038 Nhal_1058 Nitrosococcus halophilus Nc4 peptidase T2 asparaginase 2 YP_003526617.1 1045714 D 472759 CDS YP_003526618.1 292491179 8916039 1046712..1047284 1 NC_013960.1 KEGG: noc:Noc_1546 protein-L-isoaspartate(D-aspartate) O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 1047284 8916039 Nhal_1059 Nitrosococcus halophilus Nc4 protein-L-isoaspartate O-methyltransferase YP_003526618.1 1046712 D 472759 CDS YP_003526619.1 292491180 8916040 1047315..1048199 1 NC_013960.1 KEGG: mno:Mnod_2988 GTPase or GTP-binding protein-like protein; GTPase or GTP-binding protein-like protein 1048199 8916040 Nhal_1060 Nitrosococcus halophilus Nc4 GTPase or GTP-binding protein-like protein YP_003526619.1 1047315 D 472759 CDS YP_003526620.1 292491181 8916041 1048261..1049616 1 NC_013960.1 PFAM: major facilitator superfamily MFS_1; KEGG: noc:Noc_1547 major facilitator transporter; major facilitator superfamily protein 1049616 8916041 Nhal_1061 Nitrosococcus halophilus Nc4 major facilitator superfamily protein YP_003526620.1 1048261 D 472759 CDS YP_003526621.1 292491182 8916042 complement(1049655..1050701) 1 NC_013960.1 PFAM: succinylglutamate desuccinylase/aspartoacylase; KEGG: noc:Noc_1548 succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase 1050701 8916042 Nhal_1062 Nitrosococcus halophilus Nc4 succinylglutamate desuccinylase/aspartoacylase YP_003526621.1 1049655 R 472759 CDS YP_003526622.1 292491183 8916043 complement(1050705..1051610) 1 NC_013960.1 TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp; protein of unknown function DUF201; KEGG: noc:Noc_1549 S6 modification enzyme RimK; RimK family alpha-L-glutamate ligase 1051610 8916043 Nhal_1063 Nitrosococcus halophilus Nc4 RimK family alpha-L-glutamate ligase YP_003526622.1 1050705 R 472759 CDS YP_003526623.1 292491184 8916044 complement(1051624..1052133) 1 NC_013960.1 PFAM: protein of unknown function DUF785; KEGG: noc:Noc_1550 hypothetical protein; hypothetical protein 1052133 8916044 Nhal_1064 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526623.1 1051624 R 472759 CDS YP_003526624.1 292491185 8916045 1052367..1054715 1 NC_013960.1 KEGG: noc:Noc_1552 phosphoenolpyruvate-protein phosphotransferase; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; GAF domain protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; SMART: GAF domain protein; phosphoenolpyruvate-protein phosphotransferase 1054715 8916045 Nhal_1065 Nitrosococcus halophilus Nc4 phosphoenolpyruvate-protein phosphotransferase YP_003526624.1 1052367 D 472759 CDS YP_003526625.1 292491186 8916046 complement(1054787..1056706) 1 NC_013960.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: noc:Noc_1555 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 1056706 8916046 Nhal_1066 Nitrosococcus halophilus Nc4 acyl-CoA dehydrogenase domain-containing protein YP_003526625.1 1054787 R 472759 CDS YP_003526626.1 292491187 8916047 complement(1057012..1058019) 1 NC_013960.1 KEGG: noc:Noc_1556 ribonuclease Z; ribonuclease Z 1058019 8916047 Nhal_1067 Nitrosococcus halophilus Nc4 ribonuclease Z YP_003526626.1 1057012 R 472759 CDS YP_003526627.1 292491188 8916048 complement(1058090..1058488) 1 NC_013960.1 PFAM: zinc finger DksA/TraR C4-type; KEGG: noc:Noc_1557 hypothetical protein; zinc finger DksA/TraR C4-type 1058488 8916048 Nhal_1068 Nitrosococcus halophilus Nc4 zinc finger DksA/TraR C4-type YP_003526627.1 1058090 R 472759 CDS YP_003526628.1 292491189 8916049 complement(1058755..1059348) 1 NC_013960.1 KEGG: dar:Daro_2260 cytochrome C family protein; hypothetical protein 1059348 8916049 Nhal_1069 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526628.1 1058755 R 472759 CDS YP_003526629.1 292491190 8916051 1059994..1061202 1 NC_013960.1 KEGG: noc:Noc_0883 poly(A) polymerase, PcnB; TIGRFAM: poly(A) polymerase; PFAM: polynucleotide adenylyltransferase region; poly(A) polymerase 1061202 8916051 Nhal_1070 Nitrosococcus halophilus Nc4 poly(A) polymerase YP_003526629.1 1059994 D 472759 CDS YP_003526630.1 292491191 8916052 1061208..1061684 1 NC_013960.1 KEGG: noc:Noc_0884 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1061684 8916052 Nhal_1071 Nitrosococcus halophilus Nc4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_003526630.1 1061208 D 472759 CDS YP_003526631.1 292491192 8916053 1061681..1062475 1 NC_013960.1 KEGG: noc:Noc_0885 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase 1062475 8916053 Nhal_1072 Nitrosococcus halophilus Nc4 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_003526631.1 1061681 D 472759 CDS YP_003526632.1 292491193 8916054 1062475..1063326 1 NC_013960.1 KEGG: noc:Noc_0886 cytidyltransferase-related; TIGRFAM: pantoate/beta-alanine ligase; cytidyltransferase-related domain protein; PFAM: Pantoate-beta-alanine ligase; pantoate/beta-alanine ligase 1063326 8916054 Nhal_1073 Nitrosococcus halophilus Nc4 pantoate/beta-alanine ligase YP_003526632.1 1062475 D 472759 CDS YP_003526633.1 292491194 8916055 1063393..1063773 1 NC_013960.1 KEGG: noc:Noc_0887 aspartate alpha-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: aspartate decarboxylase; aspartate 1-decarboxylase 1063773 8916055 Nhal_1074 Nitrosococcus halophilus Nc4 aspartate 1-decarboxylase YP_003526633.1 1063393 D 472759 CDS YP_003526634.1 292491195 8916056 1063870..1064157 1 NC_013960.1 PFAM: acylphosphatase; KEGG: noc:Noc_0888 acylphosphatase; acylphosphatase 1064157 8916056 Nhal_1075 Nitrosococcus halophilus Nc4 acylphosphatase YP_003526634.1 1063870 D 472759 CDS YP_003526635.1 292491196 8916057 1064306..1065448 1 NC_013960.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: pin:Ping_3063 transposase, IS605 OrfB family protein; transposase, IS605 OrfB family 1065448 8916057 Nhal_1076 Nitrosococcus halophilus Nc4 transposase, IS605 OrfB family YP_003526635.1 1064306 D 472759 CDS YP_003526636.1 292491197 8916058 complement(1065519..1065728) 1 NC_013960.1 hypothetical protein 1065728 8916058 Nhal_1077 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526636.1 1065519 R 472759 CDS YP_003526637.1 292491198 8916059 1065974..1066486 1 NC_013960.1 PFAM: multicopper oxidase type 3; KEGG: noc:Noc_0889 multicopper oxidase type 3; multicopper oxidase type 3 1066486 8916059 Nhal_1078 Nitrosococcus halophilus Nc4 multicopper oxidase type 3 YP_003526637.1 1065974 D 472759 CDS YP_003526638.1 292491199 8916060 1066844..1067938 1 NC_013960.1 PFAM: multicopper oxidase type 3; multicopper oxidase type 1; multicopper oxidase type 2; KEGG: net:Neut_1406 multicopper oxidase type 3; multicopper oxidase type 3 1067938 8916060 Nhal_1079 Nitrosococcus halophilus Nc4 multicopper oxidase type 3 YP_003526638.1 1066844 D 472759 CDS YP_003526639.1 292491200 8916061 1067944..1068675 1 NC_013960.1 PFAM: cytochrome C class I; KEGG: neu:NE0926 cytochrome C, class I; cytochrome C class I 1068675 8916061 Nhal_1080 Nitrosococcus halophilus Nc4 cytochrome C class I YP_003526639.1 1067944 D 472759 CDS YP_003526640.1 292491201 8916062 1068672..1069049 1 NC_013960.1 KEGG: swd:Swoo_1415 cytochrome C class I; cytochrome C class I 1069049 8916062 Nhal_1081 Nitrosococcus halophilus Nc4 cytochrome C class I YP_003526640.1 1068672 D 472759 CDS YP_003526641.1 292491202 8916063 1069096..1070058 1 NC_013960.1 PFAM: multicopper oxidase type 3; KEGG: swd:Swoo_1417 multicopper oxidase type 3; nitrite reductase 1070058 8916063 Nhal_1082 Nitrosococcus halophilus Nc4 nitrite reductase YP_003526641.1 1069096 D 472759 CDS YP_003526642.1 292491203 8916064 complement(1070171..1070767) 1 NC_013960.1 KEGG: noc:Noc_0890 hypothetical protein; hypothetical protein 1070767 8916064 Nhal_1083 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526642.1 1070171 R 472759 CDS YP_003526643.1 292491204 8916065 complement(1070819..1072384) 1 NC_013960.1 PFAM: GntR family transcriptional regulator; aminotransferase class I and II; SMART: GntR family transcriptional regulator; KEGG: noc:Noc_0891 transcriptional regulator; GntR family transcriptional regulator 1072384 8916065 Nhal_1084 Nitrosococcus halophilus Nc4 GntR family transcriptional regulator YP_003526643.1 1070819 R 472759 CDS YP_003526644.1 292491205 8916066 1072933..1074675 1 NC_013960.1 KEGG: noc:Noc_0892 hydroxylamine oxidase; hydroxylamine oxidase 1074675 8916066 Nhal_1085 Nitrosococcus halophilus Nc4 hydroxylamine oxidase YP_003526644.1 1072933 D 472759 CDS YP_003526645.1 292491206 8916067 1074682..1075737 1 NC_013960.1 KEGG: noc:Noc_0893 hypothetical protein; hypothetical protein 1075737 8916067 Nhal_1086 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526645.1 1074682 D 472759 CDS YP_003526646.1 292491207 8916068 1075768..1076490 1 NC_013960.1 KEGG: noc:Noc_0894 cytochrome C-554 precursor; cytochrome C-554 1076490 8916068 Nhal_1087 Nitrosococcus halophilus Nc4 cytochrome C-554 YP_003526646.1 1075768 D 472759 CDS YP_003526647.1 292491208 8916069 1076510..1077169 1 NC_013960.1 PFAM: NapC/NirT cytochrome C domain protein; KEGG: noc:Noc_0895 NapC/NirT cytochrome C-like; NapC/NirT cytochrome C domain-containing protein 1077169 8916069 Nhal_1088 Nitrosococcus halophilus Nc4 NapC/NirT cytochrome C domain-containing protein YP_003526647.1 1076510 D 472759 CDS YP_003526648.1 292491209 8916070 complement(1077260..1077823) 1 NC_013960.1 PFAM: lytic transglycosylase catalytic; KEGG: noc:Noc_0896 lytic transglycosylase, catalytic; lytic transglycosylase 1077823 8916070 Nhal_1089 Nitrosococcus halophilus Nc4 lytic transglycosylase YP_003526648.1 1077260 R 472759 CDS YP_003526649.1 292491210 8916071 complement(1077820..1079547) 1 NC_013960.1 KEGG: noc:Noc_0897 prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; anticodon-binding domain protein; prolyl-tRNA synthetase 1079547 8916071 Nhal_1090 Nitrosococcus halophilus Nc4 prolyl-tRNA synthetase YP_003526649.1 1077820 R 472759 CDS YP_003526650.1 292491211 8916072 1079827..1080258 1 NC_013960.1 KEGG: noc:Noc_0899 nucleoside-diphosphate kinase; PFAM: nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase; nucleoside-diphosphate kinase 1080258 8916072 Nhal_1091 Nitrosococcus halophilus Nc4 nucleoside-diphosphate kinase YP_003526650.1 1079827 D 472759 CDS YP_003526651.1 292491212 8916073 1080277..1081395 1 NC_013960.1 TIGRFAM:radical SAM protein; PFAM: radical SAM domain protein; KEGG: noc:Noc_0900 hypothetical protein; radical SAM protein 1081395 8916073 Nhal_1092 Nitrosococcus halophilus Nc4 radical SAM protein YP_003526651.1 1080277 D 472759 CDS YP_003526652.1 292491213 8916074 1081392..1082180 1 NC_013960.1 KEGG: noc:Noc_0901 tfp pilus assembly protein PilF; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: hypothetical protein; hypothetical protein; SMART: hypothetical protein; type IV pilus biogenesis/stability protein PilW 1082180 8916074 Nhal_1093 Nitrosococcus halophilus Nc4 type IV pilus biogenesis/stability protein PilW YP_003526652.1 1081392 D 472759 CDS YP_003526653.1 292491214 8916075 1082183..1083154 1 NC_013960.1 KEGG: azo:azo0926 transcriptional regulator; transcriptional regulator 1083154 8916075 Nhal_1094 Nitrosococcus halophilus Nc4 transcriptional regulator YP_003526653.1 1082183 D 472759 CDS YP_003526654.1 292491215 8916076 1083215..1084480 1 NC_013960.1 KEGG: noc:Noc_0902 histidyl-tRNA synthetase, class IIA; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); anticodon-binding domain protein; histidyl-tRNA synthetase 1084480 8916076 Nhal_1095 Nitrosococcus halophilus Nc4 histidyl-tRNA synthetase YP_003526654.1 1083215 D 472759 CDS YP_003526655.1 292491216 8916077 1084499..1086169 1 NC_013960.1 PFAM: phosphoglucose isomerase (PGI); KEGG: noc:Noc_0903 glucose-6-phosphate isomerase; glucose-6-phosphate isomerase 1086169 8916077 Nhal_1096 Nitrosococcus halophilus Nc4 glucose-6-phosphate isomerase YP_003526655.1 1084499 D 472759 CDS YP_003526656.1 292491217 8916078 complement(1086187..1088436) 1 NC_013960.1 KEGG: noc:Noc_0904 glycogen branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase all-beta; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; 1,4-alpha-glucan branching protein 1088436 8916078 Nhal_1097 Nitrosococcus halophilus Nc4 1,4-alpha-glucan branching protein YP_003526656.1 1086187 R 472759 CDS YP_003526657.1 292491218 8916079 1088523..1089794 1 NC_013960.1 TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: nucleotidyl transferase; KEGG: noc:Noc_0905 glucose-1-phosphate adenylyltransferase; glucose-1-phosphate adenylyltransferase 1089794 8916079 Nhal_1098 Nitrosococcus halophilus Nc4 glucose-1-phosphate adenylyltransferase YP_003526657.1 1088523 D 472759 CDS YP_003526658.1 292491219 8916080 1090100..1091548 1 NC_013960.1 KEGG: noc:Noc_0906 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; 4-alpha-glucanotransferase 1091548 8916080 Nhal_1099 Nitrosococcus halophilus Nc4 4-alpha-glucanotransferase YP_003526658.1 1090100 D 472759 CDS YP_003526659.1 292491220 8916081 1091579..1091971 1 NC_013960.1 TIGRFAM: glycine cleavage system protein H; PFAM: glycine cleavage H-protein; KEGG: noc:Noc_0907 glycine cleavage H-protein; glycine cleavage system protein H 1091971 8916081 Nhal_1100 Nitrosococcus halophilus Nc4 glycine cleavage system protein H YP_003526659.1 1091579 D 472759 CDS YP_003526660.1 292491221 8916082 1091990..1093348 1 NC_013960.1 PFAM: glycine cleavage system P-protein; KEGG: noc:Noc_0908 glycine dehydrogenase subunit 1; glycine dehydrogenase 1093348 8916082 Nhal_1101 Nitrosococcus halophilus Nc4 glycine dehydrogenase YP_003526660.1 1091990 D 472759 CDS YP_003526661.1 292491222 8916083 complement(1093312..1094442) 1 NC_013960.1 PFAM: protein of unknown function UPF0075; KEGG: noc:Noc_0909 anhydro-N-acetylmuramic acid kinase; hypothetical protein 1094442 8916083 Nhal_1102 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526661.1 1093312 R 472759 CDS YP_003526662.1 292491223 8916084 complement(1094457..1095902) 1 NC_013960.1 PFAM: peptidase M23; KEGG: noc:Noc_0910 peptidase M23B; peptidase M23 1095902 8916084 Nhal_1103 Nitrosococcus halophilus Nc4 peptidase M23 YP_003526662.1 1094457 R 472759 CDS YP_003526663.1 292491224 8916085 1096295..1097512 1 NC_013960.1 KEGG: noc:Noc_0911 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; tyrosyl-tRNA synthetase 1097512 8916085 Nhal_1104 Nitrosococcus halophilus Nc4 tyrosyl-tRNA synthetase YP_003526663.1 1096295 D 472759 CDS YP_003526664.1 292491225 8916091 1103374..1103895 1 NC_013960.1 PFAM: phosphoglycerate mutase; KEGG: azc:AZC_1661 phosphohistidine phosphatase; phosphoglycerate mutase 1103895 8916091 Nhal_1105 Nitrosococcus halophilus Nc4 phosphoglycerate mutase YP_003526664.1 1103374 D 472759 CDS YP_003526665.1 292491226 8916092 complement(1103974..1104342) 1 NC_013960.1 KEGG: noc:Noc_0912 hypothetical protein; hypothetical protein 1104342 8916092 Nhal_1106 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526665.1 1103974 R 472759 CDS YP_003526666.1 292491227 8916093 1104828..1104974 1 NC_013960.1 hypothetical protein 1104974 8916093 Nhal_1107 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526666.1 1104828 D 472759 CDS YP_003526667.1 292491228 8916094 1105020..1105787 1 NC_013960.1 PFAM: methyltransferase type 11; cyclopropane-fatty-acyl-phospholipid synthase; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: noc:Noc_0914 phosphatidylethanolamine N-methyltransferase; phosphatidylethanolamine N-methyltransferase 1105787 8916094 Nhal_1108 Nitrosococcus halophilus Nc4 phosphatidylethanolamine N-methyltransferase YP_003526667.1 1105020 D 472759 CDS YP_003526668.1 292491229 8916095 complement(1105984..1106856) 1 NC_013960.1 KEGG: noc:Noc_0915 hypothetical protein; hypothetical protein 1106856 8916095 Nhal_1109 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526668.1 1105984 R 472759 CDS YP_003526669.1 292491230 8916096 complement(1107086..1107751) 1 NC_013960.1 PFAM: rhomboid family protein; KEGG: noc:Noc_0916 rhomboid-like protein; rhomboid family protein 1107751 8916096 Nhal_1110 Nitrosococcus halophilus Nc4 rhomboid family protein YP_003526669.1 1107086 R 472759 CDS YP_003526670.1 292491231 8916097 1107800..1108477 1 NC_013960.1 PFAM: peptidase M22 glycoprotease; KEGG: noc:Noc_0917 peptidase M22, glycoprotease; peptidase M22 glycoprotease 1108477 8916097 Nhal_1111 Nitrosococcus halophilus Nc4 peptidase M22 glycoprotease YP_003526670.1 1107800 D 472759 CDS YP_003526671.1 292491232 8916098 1108584..1109552 1 NC_013960.1 PFAM: radical SAM protein; KEGG: eba:ebA4360 hypothetical protein; radical SAM protein 1109552 8916098 Nhal_1112 Nitrosococcus halophilus Nc4 radical SAM protein YP_003526671.1 1108584 D 472759 CDS YP_003526672.1 292491233 8916100 1110045..1111169 1 NC_013960.1 PFAM: methyltransferase type 11; KEGG: scl:sce5622 methyltransferase; type 11 methyltransferase 1111169 8916100 Nhal_1114 Nitrosococcus halophilus Nc4 type 11 methyltransferase YP_003526672.1 1110045 D 472759 CDS YP_003526673.1 292491234 8916101 complement(1111207..1113789) 1 NC_013960.1 KEGG: noc:Noc_0919 DNA mismatch repair protein; TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS IV domain protein; MutS III domain protein; SMART: DNA mismatch repair protein MutS; MutS III domain protein; DNA mismatch repair protein MutS 1113789 8916101 Nhal_1115 Nitrosococcus halophilus Nc4 DNA mismatch repair protein MutS YP_003526673.1 1111207 R 472759 CDS YP_003526674.1 292491235 8916102 1114054..1114542 1 NC_013960.1 PFAM: damage inducible protein CinA; KEGG: noc:Noc_0922 CinA-like protein; damage inducible protein CinA 1114542 8916102 Nhal_1116 Nitrosococcus halophilus Nc4 damage inducible protein CinA YP_003526674.1 1114054 D 472759 CDS YP_003526675.1 292491236 8916103 1114520..1115059 1 NC_013960.1 TIGRFAM: 2'-5' RNA ligase; PFAM: phosphoesterase HXTX; KEGG: noc:Noc_0923 2',5' RNA ligase; 2'-5' RNA ligase 1115059 8916103 Nhal_1117 Nitrosococcus halophilus Nc4 2'-5' RNA ligase YP_003526675.1 1114520 D 472759 CDS YP_003526676.1 292491237 8916104 1115166..1116194 1 NC_013960.1 KEGG: noc:Noc_0924 DNA recombination protein, RecA; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: ATPase AAA; recA protein 1116194 8916104 Nhal_1118 Nitrosococcus halophilus Nc4 recA protein YP_003526676.1 1115166 D 472759 CDS YP_003526677.1 292491238 8916105 1116203..1116655 1 NC_013960.1 PFAM: RecX family transcriptional regulator; KEGG: noc:Noc_0925 RecX family transcriptional regulator; RecX family transcriptional regulator 1116655 8916105 Nhal_1119 Nitrosococcus halophilus Nc4 RecX family transcriptional regulator YP_003526677.1 1116203 D 472759 CDS YP_003526678.1 292491239 8916106 1116680..1119301 1 NC_013960.1 KEGG: noc:Noc_0926 alanine--tRNA ligase; TIGRFAM: alanyl-tRNA synthetase; PFAM: alanyl-tRNA synthetase class IIc; phosphoesterase DHHA1; threonyl/alanyl tRNA synthetase SAD; alanyl-tRNA synthetase 1119301 8916106 Nhal_1120 Nitrosococcus halophilus Nc4 alanyl-tRNA synthetase YP_003526678.1 1116680 D 472759 CDS YP_003526679.1 292491240 8916107 1119380..1120621 1 NC_013960.1 TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; KEGG: noc:Noc_0927 aspartate kinase; aspartate kinase 1120621 8916107 Nhal_1121 Nitrosococcus halophilus Nc4 aspartate kinase YP_003526679.1 1119380 D 472759 CDS YP_003526680.1 292491241 8916108 1120882..1121139 1 NC_013960.1 TIGRFAM: carbon storage regulator; PFAM: carbon storage regulator; KEGG: noc:Noc_0928 carbon storage regulator; carbon storage regulator 1121139 8916108 Nhal_1122 Nitrosococcus halophilus Nc4 carbon storage regulator YP_003526680.1 1120882 D 472759 CDS YP_003526681.1 292491242 8916113 complement(1122368..1122790) 1 NC_013960.1 hypothetical protein 1122790 8916113 Nhal_1125 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526681.1 1122368 R 472759 CDS YP_003526682.1 292491243 8916114 complement(1122736..1122978) 1 NC_013960.1 hypothetical protein 1122978 8916114 Nhal_1126 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526682.1 1122736 R 472759 CDS YP_003526683.1 292491244 8916115 1123370..1123627 1 NC_013960.1 PFAM: plasmid stabilization system; KEGG: bgl:bglu_1g12000 hypothetical protein; plasmid stabilization system 1123627 8916115 Nhal_1127 Nitrosococcus halophilus Nc4 plasmid stabilization system YP_003526683.1 1123370 D 472759 CDS YP_003526684.1 292491245 8916116 1123624..1124010 1 NC_013960.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: noc:Noc_2542 XRE family transcriptional regulator; hypothetical protein 1124010 8916116 Nhal_1128 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526684.1 1123624 D 472759 CDS YP_003526685.1 292491246 8916117 1124243..1125856 1 NC_013960.1 PFAM: transposase IS4 family protein; KEGG: shn:Shewana3_3655 IS4 family transposase; transposase IS4 family protein 1125856 8916117 Nhal_1129 Nitrosococcus halophilus Nc4 transposase IS4 family protein YP_003526685.1 1124243 D 472759 CDS YP_003526686.1 292491247 8916119 1126742..1127476 1 NC_013960.1 PFAM: IS1 transposase; KEGG: prw:PsycPRwf_1938 IS1 transposase; IS1 transposase 1127476 8916119 Nhal_1131 Nitrosococcus halophilus Nc4 IS1 transposase YP_003526686.1 1126742 D 472759 CDS YP_003526687.1 292491248 8916120 complement(1127483..1127605) 1 NC_013960.1 KEGG: saz:Sama_2781 hypothetical protein; hypothetical protein 1127605 8916120 Nhal_1132 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526687.1 1127483 R 472759 CDS YP_003526688.1 292491249 8916121 complement(1127962..1128609) 1 NC_013960.1 KEGG: hha:Hhal_1440 hypothetical protein; hypothetical protein 1128609 8916121 Nhal_1133 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526688.1 1127962 R 472759 CDS YP_003526689.1 292491250 8916122 complement(1128656..1129435) 1 NC_013960.1 hypothetical protein 1129435 8916122 Nhal_1134 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526689.1 1128656 R 472759 CDS YP_003526690.1 292491251 8916123 1129488..1129760 1 NC_013960.1 hypothetical protein 1129760 8916123 Nhal_1135 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526690.1 1129488 D 472759 CDS YP_003526691.1 292491252 8916124 1129757..1129963 1 NC_013960.1 hypothetical protein 1129963 8916124 Nhal_1136 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526691.1 1129757 D 472759 CDS YP_003526692.1 292491253 8916125 1129964..1130395 1 NC_013960.1 KEGG: bid:Bind_3889 hypothetical protein; hypothetical protein 1130395 8916125 Nhal_1137 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526692.1 1129964 D 472759 CDS YP_003526693.1 292491254 8916126 1130728..1130961 1 NC_013960.1 hypothetical protein 1130961 8916126 Nhal_1138 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526693.1 1130728 D 472759 CDS YP_003526694.1 292491255 8916127 1131178..1131534 1 NC_013960.1 KEGG: xoo:XOO0600 hypothetical protein; hypothetical protein 1131534 8916127 Nhal_1139 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526694.1 1131178 D 472759 CDS YP_003526695.1 292491256 8916128 1131551..1131961 1 NC_013960.1 hypothetical protein 1131961 8916128 Nhal_1140 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526695.1 1131551 D 472759 CDS YP_003526696.1 292491257 8916129 1132002..1132283 1 NC_013960.1 KEGG: sml:Smlt1976 hypothetical protein; hypothetical protein 1132283 8916129 Nhal_1141 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526696.1 1132002 D 472759 CDS YP_003526697.1 292491258 8916130 1132517..1133971 1 NC_013960.1 PFAM: catalase domain protein; KEGG: csa:Csal_0803 catalase; catalase 1133971 8916130 Nhal_1142 Nitrosococcus halophilus Nc4 catalase YP_003526697.1 1132517 D 472759 CDS YP_003526698.1 292491259 8916131 1134367..1134564 1 NC_013960.1 hypothetical protein 1134564 8916131 Nhal_1143 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526698.1 1134367 D 472759 CDS YP_003526699.1 292491260 8916133 1136258..1136536 1 NC_013960.1 PFAM: plasmid maintenance system killer; KEGG: noc:Noc_2762 plasmid maintenance system killer; plasmid maintenance system killer 1136536 8916133 Nhal_1145 Nitrosococcus halophilus Nc4 plasmid maintenance system killer YP_003526699.1 1136258 D 472759 CDS YP_003526700.1 292491261 8916134 1136549..1136851 1 NC_013960.1 KEGG: noc:Noc_2763 virulence-associated protein, TIGRFAM: addiction module antidote protein, HigA family; PFAM: hypothetical protein; SMART: hypothetical protein; HigA family addiction module antidote protein 1136851 8916134 Nhal_1146 Nitrosococcus halophilus Nc4 HigA family addiction module antidote protein YP_003526700.1 1136549 D 472759 CDS YP_003526701.1 292491262 8916135 complement(1136955..1138178) 1 NC_013960.1 PFAM: transposase mutator type; KEGG: son:SO_0708 transposase mutator family protein; transposase mutator type 1138178 8916135 Nhal_1147 Nitrosococcus halophilus Nc4 transposase mutator type YP_003526701.1 1136955 R 472759 CDS YP_003526702.1 292491263 8916136 complement(1138389..1140899) 1 NC_013960.1 KEGG: dar:Daro_0972 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; response regulator receiver; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; response regulator receiver; PAS domain containing protein; diguanylate cyclase 1140899 8916136 Nhal_1148 Nitrosococcus halophilus Nc4 diguanylate cyclase YP_003526702.1 1138389 R 472759 CDS YP_003526703.1 292491264 8916137 complement(1141138..1141584) 1 NC_013960.1 TIGRFAM: lipoprotein A; PFAM: Rare lipoprotein A; KEGG: bte:BTH_I3150 lipoprotein A family protein; lipoprotein A 1141584 8916137 Nhal_1149 Nitrosococcus halophilus Nc4 lipoprotein A YP_003526703.1 1141138 R 472759 CDS YP_003526704.1 292491265 8916138 complement(1141605..1141979) 1 NC_013960.1 KEGG: pca:Pcar_2748 hypothetical protein; hypothetical protein 1141979 8916138 Nhal_1150 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526704.1 1141605 R 472759 CDS YP_003526705.1 292491266 8916139 1142048..1142491 1 NC_013960.1 PFAM: heat shock protein Hsp20; KEGG: eba:ebA2730 HSP20 family protein; heat shock protein Hsp20 1142491 8916139 Nhal_1151 Nitrosococcus halophilus Nc4 heat shock protein Hsp20 YP_003526705.1 1142048 D 472759 CDS YP_003526706.1 292491267 8916140 1142510..1142905 1 NC_013960.1 PFAM: heat shock protein Hsp20; KEGG: mpt:Mpe_A2043 heat shock protein; heat shock protein Hsp20 1142905 8916140 Nhal_1152 Nitrosococcus halophilus Nc4 heat shock protein Hsp20 YP_003526706.1 1142510 D 472759 CDS YP_003526707.1 292491268 8916141 1143219..1144154 1 NC_013960.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_2142 ABC transporter ATPase; ABC transporter 1144154 8916141 Nhal_1153 Nitrosococcus halophilus Nc4 ABC transporter YP_003526707.1 1143219 D 472759 CDS YP_003526708.1 292491269 8916142 1144160..1147084 1 NC_013960.1 KEGG: noc:Noc_2141 ABC transporter inner membrane protein; ABC transporter permease 1147084 8916142 Nhal_1154 Nitrosococcus halophilus Nc4 ABC transporter permease YP_003526708.1 1144160 D 472759 CDS YP_003526709.1 292491270 8916143 1147097..1148095 1 NC_013960.1 KEGG: noc:Noc_2140 hypothetical protein; hypothetical protein 1148095 8916143 Nhal_1155 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526709.1 1147097 D 472759 CDS YP_003526710.1 292491271 8916144 1148187..1148732 1 NC_013960.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; KEGG: noc:Noc_1587 transposase; transposase, IS605 OrfB family 1148732 8916144 Nhal_1156 Nitrosococcus halophilus Nc4 transposase, IS605 OrfB family YP_003526710.1 1148187 D 472759 CDS YP_003526711.1 292491272 8916145 1148918..1150549 1 NC_013960.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: tgr:Tgr7_0439 chaperonin GroEL; chaperonin GroEL 1150549 8916145 Nhal_1157 Nitrosococcus halophilus Nc4 chaperonin GroEL YP_003526711.1 1148918 D 472759 CDS YP_003526712.1 292491273 8916147 1151090..1151200 1 NC_013960.1 hypothetical protein 1151200 8916147 Nhal_1159 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526712.1 1151090 D 472759 CDS YP_003526713.1 292491274 8916148 1151252..1152700 1 NC_013960.1 KEGG: noc:Noc_2139 peptidase S1C, Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; protease Do 1152700 8916148 Nhal_1160 Nitrosococcus halophilus Nc4 protease Do YP_003526713.1 1151252 D 472759 CDS YP_003526714.1 292491275 8916149 complement(1152872..1153159) 1 NC_013960.1 hypothetical protein 1153159 8916149 Nhal_1161 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526714.1 1152872 R 472759 CDS YP_003526715.1 292491276 8916150 1153294..1153497 1 NC_013960.1 hypothetical protein 1153497 8916150 Nhal_1162 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526715.1 1153294 D 472759 CDS YP_003526716.1 292491277 8916151 1153549..1153854 1 NC_013960.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: abc:ACICU_p0029 transcriptional regulator; hypothetical protein 1153854 8916151 Nhal_1163 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526716.1 1153549 D 472759 CDS YP_003526717.1 292491278 8916152 1153927..1154733 1 NC_013960.1 KEGG: bmu:Bmul_4833 hypothetical protein; hypothetical protein 1154733 8916152 Nhal_1164 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526717.1 1153927 D 472759 CDS YP_003526718.1 292491279 8916156 1157563..1158255 1 NC_013960.1 KEGG: noc:Noc_2985 hypothetical protein; hypothetical protein 1158255 8916156 Nhal_1168 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526718.1 1157563 D 472759 CDS YP_003526719.1 292491280 8916157 1158387..1158482 1 NC_013960.1 hypothetical protein 1158482 8916157 Nhal_1169 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526719.1 1158387 D 472759 CDS YP_003526720.1 292491281 8916158 1159468..1161330 1 NC_013960.1 PFAM: NERD domain protein; KEGG: tgr:Tgr7_1772 DNA helicase II; NERD domain-containing protein 1161330 8916158 Nhal_1170 Nitrosococcus halophilus Nc4 NERD domain-containing protein YP_003526720.1 1159468 D 472759 CDS YP_003526721.1 292491282 8916159 1161484..1161990 1 NC_013960.1 TIGRFAM: intracellular protease PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: gme:Gmet_2409 peptidase C56, PfpI; intracellular protease PfpI family 1161990 8916159 Nhal_1171 Nitrosococcus halophilus Nc4 intracellular protease PfpI family YP_003526721.1 1161484 D 472759 CDS YP_003526722.1 292491283 8916160 1161987..1162265 1 NC_013960.1 PFAM: protein of unknown function DUF77; KEGG: noc:Noc_2138 hypothetical protein; hypothetical protein 1162265 8916160 Nhal_1172 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526722.1 1161987 D 472759 CDS YP_003526723.1 292491284 8916161 1162303..1162767 1 NC_013960.1 TIGRFAM: phosphohistidine phosphatase SixA; PFAM: phosphoglycerate mutase; KEGG: lpn:lpg1987 phosphohistidine phosphatase SixA; phosphohistidine phosphatase SixA 1162767 8916161 Nhal_1173 Nitrosococcus halophilus Nc4 phosphohistidine phosphatase SixA YP_003526723.1 1162303 D 472759 CDS YP_003526724.1 292491285 8916163 complement(1163139..1164254) 1 NC_013960.1 KEGG: noc:Noc_2137 hypothetical protein; hypothetical protein 1164254 8916163 Nhal_1175 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526724.1 1163139 R 472759 CDS YP_003526725.1 292491286 8916164 1164458..1166368 1 NC_013960.1 PFAM: thiol-disulphide oxidoreductase DCC; SMART: HTTM domain protein; KEGG: noc:Noc_2136 hypothetical protein; thiol-disulfide oxidoreductase DCC 1166368 8916164 Nhal_1176 Nitrosococcus halophilus Nc4 thiol-disulfide oxidoreductase DCC YP_003526725.1 1164458 D 472759 CDS YP_003526726.1 292491287 8916165 1166403..1167032 1 NC_013960.1 KEGG: noc:Noc_2135 hypothetical protein; hypothetical protein 1167032 8916165 Nhal_1177 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526726.1 1166403 D 472759 CDS YP_003526727.1 292491288 8916166 1167081..1168433 1 NC_013960.1 PFAM: Na+/H+ antiporter NhaC; KEGG: noc:Noc_2134 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 1168433 8916166 Nhal_1178 Nitrosococcus halophilus Nc4 Na+/H+ antiporter NhaC YP_003526727.1 1167081 D 472759 CDS YP_003526728.1 292491289 8916167 complement(1168514..1169050) 1 NC_013960.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: tgr:Tgr7_2733 phosphoesterase PA-phosphatase related; PA-phosphatase-like phosphoesterase 1169050 8916167 Nhal_1179 Nitrosococcus halophilus Nc4 PA-phosphatase-like phosphoesterase YP_003526728.1 1168514 R 472759 CDS YP_003526729.1 292491290 8916168 complement(1169305..1169718) 1 NC_013960.1 PFAM: transposase IS200-family protein; KEGG: noc:Noc_1500 transposase IS200; transposase IS200-family protein 1169718 8916168 Nhal_1180 Nitrosococcus halophilus Nc4 transposase IS200-family protein YP_003526729.1 1169305 R 472759 CDS YP_003526730.1 292491291 8916169 1169775..1170950 1 NC_013960.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_1501 transposase; transposase, IS605 OrfB family 1170950 8916169 Nhal_1181 Nitrosococcus halophilus Nc4 transposase, IS605 OrfB family YP_003526730.1 1169775 D 472759 CDS YP_003526731.1 292491292 8916170 complement(1170993..1171313) 1 NC_013960.1 KEGG: nmu:Nmul_A1522 hypothetical protein; hypothetical protein 1171313 8916170 Nhal_1182 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526731.1 1170993 R 472759 CDS YP_003526732.1 292491293 8916171 1171427..1172173 1 NC_013960.1 PFAM: SNARE associated Golgi protein; KEGG: noc:Noc_2133 transmembrane phospholipase protein; hypothetical protein 1172173 8916171 Nhal_1183 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526732.1 1171427 D 472759 CDS YP_003526733.1 292491294 8916172 1172183..1172863 1 NC_013960.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: noc:Noc_2132 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 1172863 8916172 Nhal_1184 Nitrosococcus halophilus Nc4 endonuclease/exonuclease/phosphatase YP_003526733.1 1172183 D 472759 CDS YP_003526734.1 292491295 8916173 complement(1172870..1173742) 1 NC_013960.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: noc:Noc_2131 pyrimidine reductase, riboflavin biosynthesis, RibD; bifunctional deaminase-reductase domain-containing protein 1173742 8916173 Nhal_1185 Nitrosococcus halophilus Nc4 bifunctional deaminase-reductase domain-containing protein YP_003526734.1 1172870 R 472759 CDS YP_003526735.1 292491296 8916174 1173882..1174067 1 NC_013960.1 hypothetical protein 1174067 8916174 Nhal_1186 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526735.1 1173882 D 472759 CDS YP_003526736.1 292491297 8916175 1174205..1174471 1 NC_013960.1 PFAM: protein of unknown function DUF211; KEGG: sfr:Sfri_2293 protein of unknown function DUF211; hypothetical protein 1174471 8916175 Nhal_1187 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526736.1 1174205 D 472759 CDS YP_003526737.1 292491298 8916176 1174526..1175110 1 NC_013960.1 PFAM: protein of unknown function DUF125 transmembrane; KEGG: sfr:Sfri_2292 protein of unknown function DUF125, transmembrane; hypothetical protein 1175110 8916176 Nhal_1188 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526737.1 1174526 D 472759 CDS YP_003526738.1 292491299 8916177 1175203..1178391 1 NC_013960.1 KEGG: noc:Noc_2130 cation transporting ATPase, E1-E2 type; TIGRFAM: calcium-translocating P-type ATPase, PMCA-type; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; ATPase P 1178391 8916177 Nhal_1189 Nitrosococcus halophilus Nc4 ATPase P YP_003526738.1 1175203 D 472759 CDS YP_003526739.1 292491300 8916178 complement(1178631..1179518) 1 NC_013960.1 KEGG: noc:Noc_2746 hypothetical protein; hypothetical protein 1179518 8916178 Nhal_1190 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526739.1 1178631 R 472759 CDS YP_003526740.1 292491301 8916179 complement(1179757..1182240) 1 NC_013960.1 KEGG: rpe:RPE_0832 outer membrane protein precursor; hypothetical protein 1182240 8916179 Nhal_1191 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526740.1 1179757 R 472759 CDS YP_003526741.1 292491302 8916180 complement(1182245..1183222) 1 NC_013960.1 TIGRFAM: cytochrome C family protein; KEGG: rpt:Rpal_0817 cytochrome C family protein; cytochrome C family protein 1183222 8916180 Nhal_1192 Nitrosococcus halophilus Nc4 cytochrome C family protein YP_003526741.1 1182245 R 472759 CDS YP_003526742.1 292491303 8916181 1183260..1184111 1 NC_013960.1 PFAM: NUDIX hydrolase; KEGG: noc:Noc_2749 NUDIX hydrolase; NUDIX hydrolase 1184111 8916181 Nhal_1193 Nitrosococcus halophilus Nc4 NUDIX hydrolase YP_003526742.1 1183260 D 472759 CDS YP_003526743.1 292491304 8916182 complement(1184184..1187666) 1 NC_013960.1 TIGRFAM: CRISPR-associated helicase Cas3 family; KEGG: noc:Noc_2750 helicases-like; CRISPR-associated helicase Cas3 family 1187666 8916182 Nhal_1194 Nitrosococcus halophilus Nc4 CRISPR-associated helicase Cas3 family YP_003526743.1 1184184 R 472759 CDS YP_003526744.1 292491305 8916183 complement(1187663..1188550) 1 NC_013960.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: noc:Noc_2751 hypothetical protein; CRISPR-associated protein Cas1 1188550 8916183 Nhal_1195 Nitrosococcus halophilus Nc4 CRISPR-associated protein Cas1 YP_003526744.1 1187663 R 472759 CDS YP_003526745.1 292491306 8916184 1188871..1190229 1 NC_013960.1 KEGG: noc:Noc_2752 hypothetical protein; hypothetical protein 1190229 8916184 Nhal_1196 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526745.1 1188871 D 472759 CDS YP_003526746.1 292491307 8916185 1190226..1191155 1 NC_013960.1 KEGG: noc:Noc_2753 hypothetical protein; hypothetical protein 1191155 8916185 Nhal_1197 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526746.1 1190226 D 472759 CDS YP_003526747.1 292491308 8916186 1191178..1192236 1 NC_013960.1 TIGRFAM: CRISPR-associated protein, Csy3 family; KEGG: noc:Noc_2754 hypothetical protein; CRISPR-associated protein, Csy3 family 1192236 8916186 Nhal_1198 Nitrosococcus halophilus Nc4 CRISPR-associated protein, Csy3 family YP_003526747.1 1191178 D 472759 CDS YP_003526748.1 292491309 8916187 1192251..1192850 1 NC_013960.1 TIGRFAM: CRISPR-associated protein, Csy4 family; KEGG: noc:Noc_2755 hypothetical protein; CRISPR-associated protein, Csy4 family 1192850 8916187 Nhal_1199 Nitrosococcus halophilus Nc4 CRISPR-associated protein, Csy4 family YP_003526748.1 1192251 D 472759 CDS YP_003526749.1 292491310 8916188 complement(1195089..1196255) 1 NC_013960.1 PFAM: protein of unknown function DUF214; KEGG: noc:Noc_2216 hypothetical protein; hypothetical protein 1196255 8916188 Nhal_1200 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526749.1 1195089 R 472759 CDS YP_003526750.1 292491311 8916189 complement(1196258..1197418) 1 NC_013960.1 PFAM: protein of unknown function DUF214; KEGG: noc:Noc_2215 hypothetical protein; hypothetical protein 1197418 8916189 Nhal_1201 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526750.1 1196258 R 472759 CDS YP_003526751.1 292491312 8916190 complement(1197446..1198141) 1 NC_013960.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_2214 ABC transporter ATPase; ABC transporter 1198141 8916190 Nhal_1202 Nitrosococcus halophilus Nc4 ABC transporter YP_003526751.1 1197446 R 472759 CDS YP_003526752.1 292491313 8916191 complement(1198146..1199369) 1 NC_013960.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: noc:Noc_2213 secretion protein HlyD; RND family efflux transporter MFP subunit 1199369 8916191 Nhal_1203 Nitrosococcus halophilus Nc4 RND family efflux transporter MFP subunit YP_003526752.1 1198146 R 472759 CDS YP_003526753.1 292491314 8916192 1199568..1200080 1 NC_013960.1 TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: aav:Aave_0123 CDP-diacylglycerol--serine O-phosphatidyltransferase; CDP-diacylglycerol/serine O-phosphatidyltransferase 1200080 8916192 Nhal_1204 Nitrosococcus halophilus Nc4 CDP-diacylglycerol/serine O-phosphatidyltransferase YP_003526753.1 1199568 D 472759 CDS YP_003526754.1 292491315 8916193 1200146..1200583 1 NC_013960.1 PFAM: UspA domain protein; KEGG: noc:Noc_2210 universal stress protein UspA; UspA domain-containing protein 1200583 8916193 Nhal_1205 Nitrosococcus halophilus Nc4 UspA domain-containing protein YP_003526754.1 1200146 D 472759 CDS YP_003526755.1 292491316 8916194 1200721..1201611 1 NC_013960.1 TIGRFAM: methylisocitrate lyase; KEGG: noc:Noc_2209 2-methylisocitrate lyase; methylisocitrate lyase 1201611 8916194 Nhal_1206 Nitrosococcus halophilus Nc4 methylisocitrate lyase YP_003526755.1 1200721 D 472759 CDS YP_003526756.1 292491317 8916195 1201608..1202732 1 NC_013960.1 KEGG: noc:Noc_2208 2-methylcitrate synthase/citrate synthase II; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: citrate synthase; 2-methylcitrate synthase/citrate synthase II 1202732 8916195 Nhal_1207 Nitrosococcus halophilus Nc4 2-methylcitrate synthase/citrate synthase II YP_003526756.1 1201608 D 472759 CDS YP_003526757.1 292491318 8916196 1202745..1204196 1 NC_013960.1 KEGG: noc:Noc_2207 2-methylcitrate dehydratase; TIGRFAM: 2-methylcitrate dehydratase; PFAM: MmgE/PrpD family protein; 2-methylcitrate dehydratase 1204196 8916196 Nhal_1208 Nitrosococcus halophilus Nc4 2-methylcitrate dehydratase YP_003526757.1 1202745 D 472759 CDS YP_003526758.1 292491319 8916197 1204443..1204685 1 NC_013960.1 TIGRFAM: AbrB family transcriptional regulator; PFAM: SpoVT/AbrB domain protein; KEGG: noc:Noc_2206 AbrB family transcriptional regulator; AbrB family transcriptional regulator 1204685 8916197 Nhal_1209 Nitrosococcus halophilus Nc4 AbrB family transcriptional regulator YP_003526758.1 1204443 D 472759 CDS YP_003526759.1 292491320 8916198 1204669..1205121 1 NC_013960.1 PFAM: PilT protein domain protein; KEGG: noc:Noc_2205 PilT protein-like; PilT protein domain-containing protein 1205121 8916198 Nhal_1210 Nitrosococcus halophilus Nc4 PilT protein domain-containing protein YP_003526759.1 1204669 D 472759 CDS YP_003526760.1 292491321 8916199 complement(1205312..1206436) 1 NC_013960.1 PFAM: dehydrogenase; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: noc:Noc_1433 branched-chain alpha-keto acid dehydrogenase subunit E2; dihydrolipoyllysine-residue (2-methylpropanoyl)transferase 1206436 8916199 Nhal_1211 Nitrosococcus halophilus Nc4 dihydrolipoyllysine-residue (2-methylpropanoyl)transferase YP_003526760.1 1205312 R 472759 CDS YP_003526761.1 292491322 8916200 complement(1206433..1207413) 1 NC_013960.1 PFAM: transketolase; transketolase domain protein; KEGG: noc:Noc_1434 transketolase; transketolase 1207413 8916200 Nhal_1212 Nitrosococcus halophilus Nc4 transketolase YP_003526761.1 1206433 R 472759 CDS YP_003526762.1 292491323 8916201 complement(1207406..1208482) 1 NC_013960.1 KEGG: noc:Noc_1435 pyruvate dehydrogenase (lipoamide); TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, subunit alpha; PFAM: dehydrogenase E1 component; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 1208482 8916201 Nhal_1213 Nitrosococcus halophilus Nc4 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha YP_003526762.1 1207406 R 472759 CDS YP_003526763.1 292491324 8916202 complement(1208597..1209712) 1 NC_013960.1 PFAM: Glu/Leu/Phe/Val dehydrogenase dimerisation region; Glu/Leu/Phe/Val dehydrogenase; KEGG: noc:Noc_1436 Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerization region 1209712 8916202 Nhal_1214 Nitrosococcus halophilus Nc4 Glu/Leu/Phe/Val dehydrogenase dimerization region YP_003526763.1 1208597 R 472759 CDS YP_003526764.1 292491325 8916203 1209898..1210761 1 NC_013960.1 PFAM: tryptophan 23-dioxygenase; KEGG: spe:Spro_3022 tryptophan 23-dioxygenase; tryptophan 23-dioxygenase 1210761 8916203 Nhal_1215 Nitrosococcus halophilus Nc4 tryptophan 23-dioxygenase YP_003526764.1 1209898 D 472759 CDS YP_003526765.1 292491326 8916204 1210727..1211956 1 NC_013960.1 PFAM: aminotransferase class V; KEGG: swp:swp_0261 kynureninase; class V aminotransferase 1211956 8916204 Nhal_1216 Nitrosococcus halophilus Nc4 class V aminotransferase YP_003526765.1 1210727 D 472759 CDS YP_003526766.1 292491327 8916205 1212089..1213144 1 NC_013960.1 KEGG: noc:Noc_1437 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 1213144 8916205 Nhal_1217 Nitrosococcus halophilus Nc4 4-hydroxyphenylpyruvate dioxygenase YP_003526766.1 1212089 D 472759 CDS YP_003526767.1 292491328 8916206 1213146..1214264 1 NC_013960.1 PFAM: homogentisate 12-dioxygenase; KEGG: noc:Noc_1438 homogentisate 1,2-dioxygenase; homogentisate 12-dioxygenase 1214264 8916206 Nhal_1218 Nitrosococcus halophilus Nc4 homogentisate 12-dioxygenase YP_003526767.1 1213146 D 472759 CDS YP_003526768.1 292491329 8916207 1214318..1215295 1 NC_013960.1 PFAM: fumarylacetoacetate hydrolase; KEGG: noc:Noc_1439 fumarylacetoacetate hydrolase; fumarylacetoacetate hydrolase 1215295 8916207 Nhal_1219 Nitrosococcus halophilus Nc4 fumarylacetoacetate hydrolase YP_003526768.1 1214318 D 472759 CDS YP_003526769.1 292491330 8916208 1215289..1215921 1 NC_013960.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: glutathione S-transferase domain; KEGG: noc:Noc_1440 maleylacetoacetate isomerase; maleylacetoacetate isomerase 1215921 8916208 Nhal_1220 Nitrosococcus halophilus Nc4 maleylacetoacetate isomerase YP_003526769.1 1215289 D 472759 CDS YP_003526770.1 292491331 8916209 1216368..1217303 1 NC_013960.1 KEGG: noc:Noc_1441 hypothetical protein; hypothetical protein 1217303 8916209 Nhal_1221 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526770.1 1216368 D 472759 CDS YP_003526771.1 292491332 8916210 1217369..1217878 1 NC_013960.1 KEGG: noc:Noc_1442 hypothetical protein; hypothetical protein 1217878 8916210 Nhal_1222 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526771.1 1217369 D 472759 CDS YP_003526772.1 292491333 8916211 complement(1217896..1219596) 1 NC_013960.1 PFAM: stage II sporulation E family protein; Forkhead-associated protein; GAF domain protein; SMART: protein phosphatase 2C domain protein; Forkhead-associated protein; GAF domain protein; KEGG: sfu:Sfum_2453 serine phosphatase; stage II sporulation E family protein 1219596 8916211 Nhal_1223 Nitrosococcus halophilus Nc4 stage II sporulation E family protein YP_003526772.1 1217896 R 472759 CDS YP_003526773.1 292491334 8916212 1219758..1220516 1 NC_013960.1 PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: noc:Noc_1759 alpha/beta hydrolase fold hydrolase or acyltransferase; alpha/beta hydrolase fold protein 1220516 8916212 Nhal_1224 Nitrosococcus halophilus Nc4 alpha/beta hydrolase fold protein YP_003526773.1 1219758 D 472759 CDS YP_003526774.1 292491335 8916213 complement(1220521..1222605) 1 NC_013960.1 KEGG: noc:Noc_1758 PAS sensor diguanylate cyclase/phophodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; response regulator receiver; PAS fold domain protein; hypothetical protein; SMART: EAL domain protein; GGDEF domain containing protein; response regulator receiver; PAS domain containing protein; diguanylate cyclase 1222605 8916213 Nhal_1225 Nitrosococcus halophilus Nc4 diguanylate cyclase YP_003526774.1 1220521 R 472759 CDS YP_003526775.1 292491336 8916214 complement(1222598..1222711) 1 NC_013960.1 hypothetical protein 1222711 8916214 Nhal_1226 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526775.1 1222598 R 472759 CDS YP_003526776.1 292491337 8916216 1223281..1224231 1 NC_013960.1 PFAM: oxidoreductase; KEGG: noc:Noc_1755 oxidoreductase; oxidoreductase 1224231 8916216 Nhal_1228 Nitrosococcus halophilus Nc4 oxidoreductase YP_003526776.1 1223281 D 472759 CDS YP_003526777.1 292491338 8916217 1224262..1225365 1 NC_013960.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: noc:Noc_1754 DegT/DnrJ/EryC1/StrS aminotransferase; glutamine--scyllo-inositol transaminase 1225365 8916217 Nhal_1229 Nitrosococcus halophilus Nc4 glutamine--scyllo-inositol transaminase YP_003526777.1 1224262 D 472759 CDS YP_003526778.1 292491339 8916218 1225355..1226533 1 NC_013960.1 KEGG: noc:Noc_1753 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; lipid-A-disaccharide synthase 1226533 8916218 Nhal_1230 Nitrosococcus halophilus Nc4 lipid-A-disaccharide synthase YP_003526778.1 1225355 D 472759 CDS YP_003526779.1 292491340 8916219 complement(1226553..1227335) 1 NC_013960.1 KEGG: noc:Noc_1752 UDP-N-acetylglucosamine acyltransferase; TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; PFAM: transferase; acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase 1227335 8916219 Nhal_1231 Nitrosococcus halophilus Nc4 acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase YP_003526779.1 1226553 R 472759 CDS YP_003526780.1 292491341 8916220 complement(1227417..1227776) 1 NC_013960.1 KEGG: noc:Noc_1751 hypothetical protein; hypothetical protein 1227776 8916220 Nhal_1232 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526780.1 1227417 R 472759 CDS YP_003526781.1 292491342 8916221 complement(1228003..1228794) 1 NC_013960.1 PFAM: beta-lactamase; KEGG: noc:Noc_1750 hydroxyacylglutathione hydrolase; hydroxyacylglutathione hydrolase 1228794 8916221 Nhal_1233 Nitrosococcus halophilus Nc4 hydroxyacylglutathione hydrolase YP_003526781.1 1228003 R 472759 CDS YP_003526782.1 292491343 8916222 complement(1228798..1229943) 1 NC_013960.1 PFAM: IspG family protein; KEGG: noc:Noc_1749 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1229943 8916222 Nhal_1234 Nitrosococcus halophilus Nc4 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_003526782.1 1228798 R 472759 CDS YP_003526783.1 292491344 8916223 complement(1230049..1231065) 1 NC_013960.1 KEGG: noc:Noc_1748 hypothetical protein; hypothetical protein 1231065 8916223 Nhal_1235 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526783.1 1230049 R 472759 CDS YP_003526784.1 292491345 8916224 complement(1231317..1234025) 1 NC_013960.1 TIGRFAM: hopanoid biosynthesis associated RND transporter like protein HpnN; KEGG: noc:Noc_1747 hypothetical protein; hopanoid biosynthesis associated RND transporter like protein HpnN 1234025 8916224 Nhal_1236 Nitrosococcus halophilus Nc4 hopanoid biosynthesis associated RND transporter like protein HpnN YP_003526784.1 1231317 R 472759 CDS YP_003526785.1 292491346 8916225 complement(1234052..1234666) 1 NC_013960.1 TIGRFAM: hopanoid biosynthesis associated membrane protein HpnM; PFAM: toluene tolerance protein; KEGG: noc:Noc_1746 toluene tolerance; hopanoid biosynthesis associated membrane protein HpnM 1234666 8916225 Nhal_1237 Nitrosococcus halophilus Nc4 hopanoid biosynthesis associated membrane protein HpnM YP_003526785.1 1234052 R 472759 CDS YP_003526786.1 292491347 8916226 complement(1234779..1235897) 1 NC_013960.1 PFAM: glycosyl transferase family 2; KEGG: avn:Avin_20620 glycosyl transferase, family 2; family 2 glycosyl transferase 1235897 8916226 Nhal_1238 Nitrosococcus halophilus Nc4 family 2 glycosyl transferase YP_003526786.1 1234779 R 472759 CDS YP_003526787.1 292491348 8916227 complement(1235984..1237099) 1 NC_013960.1 TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: radical SAM protein; KEGG: noc:Noc_1745 oxidoreductase; hopanoid biosynthesis associated radical SAM protein HpnH 1237099 8916227 Nhal_1239 Nitrosococcus halophilus Nc4 hopanoid biosynthesis associated radical SAM protein HpnH YP_003526787.1 1235984 R 472759 CDS YP_003526788.1 292491349 8916228 complement(1237130..1238092) 1 NC_013960.1 KEGG: noc:Noc_1744 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase 1238092 8916228 Nhal_1240 Nitrosococcus halophilus Nc4 hydroxymethylbutenyl pyrophosphate reductase YP_003526788.1 1237130 R 472759 CDS YP_003526789.1 292491350 8916229 1238399..1240321 1 NC_013960.1 TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: transketolase; transketolase; KEGG: noc:Noc_1743 1-deoxy-D-xylulose-5-phosphate synthase; deoxyxylulose-5-phosphate synthase 1240321 8916229 Nhal_1241 Nitrosococcus halophilus Nc4 deoxyxylulose-5-phosphate synthase YP_003526789.1 1238399 D 472759 CDS YP_003526790.1 292491351 8916230 1240406..1240798 1 NC_013960.1 PFAM: copper resistance protein CopC; KEGG: noc:Noc_1742 copper resistance protein CopC; copper resistance protein CopC 1240798 8916230 Nhal_1242 Nitrosococcus halophilus Nc4 copper resistance protein CopC YP_003526790.1 1240406 D 472759 CDS YP_003526791.1 292491352 8916231 1240812..1242455 1 NC_013960.1 PFAM: copper resistance D domain protein; KEGG: noc:Noc_1741 copper resistance D; copper resistance D domain-containing protein 1242455 8916231 Nhal_1243 Nitrosococcus halophilus Nc4 copper resistance D domain-containing protein YP_003526791.1 1240812 D 472759 CDS YP_003526792.1 292491353 8916232 1242468..1244576 1 NC_013960.1 KEGG: noc:Noc_1740 glycogen debranching protein GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; glycogen debranching protein GlgX 1244576 8916232 Nhal_1244 Nitrosococcus halophilus Nc4 glycogen debranching protein GlgX YP_003526792.1 1242468 D 472759 CDS YP_003526793.1 292491354 8916233 1244697..1246994 1 NC_013960.1 KEGG: noc:Noc_1739 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TIGRFAM: 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase; PFAM: methionine synthase vitamin-B12 independent; Cobalamin-independent synthase MetE domain protein; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase 1246994 8916233 Nhal_1245 Nitrosococcus halophilus Nc4 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase YP_003526793.1 1244697 D 472759 CDS YP_003526794.1 292491355 8916234 1247212..1248741 1 NC_013960.1 PFAM: radical SAM protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: noc:Noc_1738 cobalamin B12-binding/radical SAM domain-containing Fe-S oxidoreductase; radical SAM protein 1248741 8916234 Nhal_1246 Nitrosococcus halophilus Nc4 radical SAM protein YP_003526794.1 1247212 D 472759 CDS YP_003526795.1 292491356 8916235 1248885..1251134 1 NC_013960.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: scl:sce0363 protein kinase; serine/threonine protein kinase-like protein 1251134 8916235 Nhal_1247 Nitrosococcus halophilus Nc4 serine/threonine protein kinase-like protein YP_003526795.1 1248885 D 472759 CDS YP_003526796.1 292491357 8916236 complement(1251111..1252478) 1 NC_013960.1 KEGG: noc:Noc_1840 divalent cation transporter; TIGRFAM: magnesium transporter; PFAM: MgtE intracellular region; CBS domain containing protein; MgtE integral membrane region; SMART: CBS domain containing protein; magnesium transporter 1252478 8916236 Nhal_1248 Nitrosococcus halophilus Nc4 magnesium transporter YP_003526796.1 1251111 R 472759 CDS YP_003526797.1 292491358 8916237 1252503..1252616 1 NC_013960.1 hypothetical protein 1252616 8916237 Nhal_1249 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526797.1 1252503 D 472759 CDS YP_003526798.1 292491359 8916238 complement(1252573..1253385) 1 NC_013960.1 PFAM: inositol monophosphatase; KEGG: noc:Noc_1838 inositol monophosphatase; inositol monophosphatase 1253385 8916238 Nhal_1250 Nitrosococcus halophilus Nc4 inositol monophosphatase YP_003526798.1 1252573 R 472759 CDS YP_003526799.1 292491360 8916239 complement(1253401..1254351) 1 NC_013960.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: noc:Noc_1837 LysR family transcriptional regulator; LysR family transcriptional regulator 1254351 8916239 Nhal_1251 Nitrosococcus halophilus Nc4 LysR family transcriptional regulator YP_003526799.1 1253401 R 472759 CDS YP_003526800.1 292491361 8916240 1254518..1255459 1 NC_013960.1 PFAM: SEC-C motif domain protein; KEGG: tgr:Tgr7_2445 hypothetical protein; SEC-C motif domain-containing protein 1255459 8916240 Nhal_1252 Nitrosococcus halophilus Nc4 SEC-C motif domain-containing protein YP_003526800.1 1254518 D 472759 CDS YP_003526801.1 292491362 8916241 complement(1255480..1255944) 1 NC_013960.1 KEGG: nmu:Nmul_A2143 integral membrane protein; integral membrane protein 1255944 8916241 Nhal_1253 Nitrosococcus halophilus Nc4 integral membrane protein YP_003526801.1 1255480 R 472759 CDS YP_003526802.1 292491363 8916242 complement(1255946..1257223) 1 NC_013960.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: eba:ebA6861 hypothetical protein; NAD-dependent epimerase/dehydratase 1257223 8916242 Nhal_1254 Nitrosococcus halophilus Nc4 NAD-dependent epimerase/dehydratase YP_003526802.1 1255946 R 472759 CDS YP_003526803.1 292491364 8916243 complement(1257359..1257799) 1 NC_013960.1 KEGG: yen:YE4124 isochorismatase family hydrolase; isochorismatase family hydrolase 1257799 8916243 Nhal_1255 Nitrosococcus halophilus Nc4 isochorismatase family hydrolase YP_003526803.1 1257359 R 472759 CDS YP_003526804.1 292491365 8916244 complement(1258039..1258389) 1 NC_013960.1 hypothetical protein 1258389 8916244 Nhal_1256 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526804.1 1258039 R 472759 CDS YP_003526805.1 292491366 8916245 complement(1258901..1260700) 1 NC_013960.1 PFAM: FG-GAP repeat protein; SMART: Integrin alpha beta-propellor repeat protein; KEGG: noc:Noc_1762 integrins alpha chain; FG-GAP repeat-containing protein 1260700 8916245 Nhal_1257 Nitrosococcus halophilus Nc4 FG-GAP repeat-containing protein YP_003526805.1 1258901 R 472759 CDS YP_003526806.1 292491367 8916249 complement(1261865..1262083) 1 NC_013960.1 PFAM: protein of unknown function UPF0150; KEGG: noc:Noc_1108 hypothetical protein; hypothetical protein 1262083 8916249 Nhal_1261 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526806.1 1261865 R 472759 CDS YP_003526807.1 292491368 8916250 1262336..1262548 1 NC_013960.1 KEGG: gme:Gmet_A3569 addiction module toxin, RelE/StbE; hypothetical protein 1262548 8916250 Nhal_1262 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526807.1 1262336 D 472759 CDS YP_003526808.1 292491369 8916251 complement(1262623..1262910) 1 NC_013960.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: avn:Avin_04240 transcriptional regulator with fis-type helix-turn-helix motif; hypothetical protein 1262910 8916251 Nhal_1263 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526808.1 1262623 R 472759 CDS YP_003526809.1 292491370 8916253 complement(1263490..1263741) 1 NC_013960.1 KEGG: tgr:Tgr7_0154 hypothetical protein; hypothetical protein 1263741 8916253 Nhal_1265 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526809.1 1263490 R 472759 CDS YP_003526810.1 292491371 8916254 complement(1263734..1264015) 1 NC_013960.1 PFAM: protein of unknown function DUF497; KEGG: tgr:Tgr7_0155 hypothetical protein; hypothetical protein 1264015 8916254 Nhal_1266 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526810.1 1263734 R 472759 CDS YP_003526811.1 292491372 8916256 complement(1264451..1264660) 1 NC_013960.1 KEGG: cbg:CbuG_0274 hypothetical protein; hypothetical protein 1264660 8916256 Nhal_1268 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526811.1 1264451 R 472759 CDS YP_003526812.1 292491373 8916257 complement(1264653..1264946) 1 NC_013960.1 PFAM: protein of unknown function DUF497; KEGG: ppr:PBPRB0296 hypothetical protein; hypothetical protein 1264946 8916257 Nhal_1269 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526812.1 1264653 R 472759 CDS YP_003526813.1 292491374 8916259 complement(1265924..1267015) 1 NC_013960.1 KEGG: rpt:Rpal_2694 periplasmic protein-like protein; hypothetical protein 1267015 8916259 Nhal_1271 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526813.1 1265924 R 472759 CDS YP_003526814.1 292491375 8916260 1267160..1267432 1 NC_013960.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: noc:Noc_1101 prevent-host-death protein; prevent-host-death family protein 1267432 8916260 Nhal_1272 Nitrosococcus halophilus Nc4 prevent-host-death family protein YP_003526814.1 1267160 D 472759 CDS YP_003526815.1 292491376 8916261 1267413..1267682 1 NC_013960.1 TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: noc:Noc_1100 addiction module toxin, Txe/YoeB; Txe/YoeB family addiction module toxin 1267682 8916261 Nhal_1273 Nitrosococcus halophilus Nc4 Txe/YoeB family addiction module toxin YP_003526815.1 1267413 D 472759 CDS YP_003526816.1 292491377 8916262 1267874..1267969 1 NC_013960.1 hypothetical protein 1267969 8916262 Nhal_1274 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526816.1 1267874 D 472759 CDS YP_003526817.1 292491378 8916263 complement(1268094..1268792) 1 NC_013960.1 PFAM: protein of unknown function DUF1568; KEGG: sse:Ssed_3670 transposase and inactivated derivatives; hypothetical protein 1268792 8916263 Nhal_1275 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526817.1 1268094 R 472759 CDS YP_003526818.1 292491379 8916265 1269425..1270192 1 NC_013960.1 KEGG: sun:SUN_2374 hypothetical protein; hypothetical protein 1270192 8916265 Nhal_1277 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526818.1 1269425 D 472759 CDS YP_003526819.1 292491380 8916266 complement(1270186..1270470) 1 NC_013960.1 KEGG: vfm:VFMJ11_1428 hypothetical protein; hypothetical protein 1270470 8916266 Nhal_1278 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526819.1 1270186 R 472759 CDS YP_003526820.1 292491381 8916267 complement(1270954..1271583) 1 NC_013960.1 hypothetical protein 1271583 8916267 Nhal_1279 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526820.1 1270954 R 472759 CDS YP_003526821.1 292491382 8916268 complement(1271580..1271678) 1 NC_013960.1 hypothetical protein 1271678 8916268 Nhal_1280 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526821.1 1271580 R 472759 CDS YP_003526822.1 292491383 8916269 complement(1271718..1271945) 1 NC_013960.1 hypothetical protein 1271945 8916269 Nhal_1281 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526822.1 1271718 R 472759 CDS YP_003526823.1 292491384 8916270 complement(1271949..1272215) 1 NC_013960.1 KEGG: ypk:y2190 hypothetical protein; hypothetical protein 1272215 8916270 Nhal_1282 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526823.1 1271949 R 472759 CDS YP_003526824.1 292491385 8916271 1272427..1273392 1 NC_013960.1 TIGRFAM: integron integrase; PFAM: integrase family protein; KEGG: tbd:Tbd_1215 integron integrase; integron integrase 1273392 8916271 Nhal_1283 Nitrosococcus halophilus Nc4 integron integrase YP_003526824.1 1272427 D 472759 CDS YP_003526825.1 292491386 8916272 complement(1273443..1274594) 1 NC_013960.1 PFAM: transposase IS4 family protein; KEGG: pca:Pcar_0986 transposase; transposase IS4 family protein 1274594 8916272 Nhal_1284 Nitrosococcus halophilus Nc4 transposase IS4 family protein YP_003526825.1 1273443 R 472759 CDS YP_003526826.1 292491387 8916275 1275402..1275617 1 NC_013960.1 KEGG: noc:Noc_0414 hypothetical protein; hypothetical protein 1275617 8916275 Nhal_1287 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526826.1 1275402 D 472759 CDS YP_003526827.1 292491388 8916276 1275614..1276015 1 NC_013960.1 PFAM: PilT protein domain protein; KEGG: pol:Bpro_4104 PilT protein-like; PilT protein domain-containing protein 1276015 8916276 Nhal_1288 Nitrosococcus halophilus Nc4 PilT protein domain-containing protein YP_003526827.1 1275614 D 472759 CDS YP_003526828.1 292491389 8916277 complement(1276071..1278209) 1 NC_013960.1 KEGG: noc:Noc_1300 RelA/SpoT protein; TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; RelA/SpoT family protein 1278209 8916277 Nhal_1289 Nitrosococcus halophilus Nc4 RelA/SpoT family protein YP_003526828.1 1276071 R 472759 CDS YP_003526829.1 292491390 8916278 complement(1278228..1282157) 1 NC_013960.1 KEGG: noc:Noc_1301 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase-associated domain protein; protein of unknown function DUF1605; helicase; SMART: DEAD-like helicase ; helicase; ATPase AAA; ATP-dependent helicase HrpA 1282157 8916278 Nhal_1290 Nitrosococcus halophilus Nc4 ATP-dependent helicase HrpA YP_003526829.1 1278228 R 472759 CDS YP_003526830.1 292491391 8916279 1282220..1282420 1 NC_013960.1 hypothetical protein 1282420 8916279 Nhal_1291 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526830.1 1282220 D 472759 CDS YP_003526831.1 292491392 8916280 1282848..1283417 1 NC_013960.1 KEGG: noc:Noc_1302 hypothetical protein; hypothetical protein 1283417 8916280 Nhal_1292 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526831.1 1282848 D 472759 CDS YP_003526832.1 292491393 8916281 1283809..1284057 1 NC_013960.1 hypothetical protein 1284057 8916281 Nhal_1293 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526832.1 1283809 D 472759 CDS YP_003526833.1 292491394 8916282 1284085..1286373 1 NC_013960.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; RNA binding S1 domain protein; KEGG: noc:Noc_1303 RNA binding S1; RNA binding S1 domain-containing protein 1286373 8916282 Nhal_1294 Nitrosococcus halophilus Nc4 RNA binding S1 domain-containing protein YP_003526833.1 1284085 D 472759 CDS YP_003526834.1 292491395 8916283 complement(1286513..1286785) 1 NC_013960.1 KEGG: noc:Noc_1304 hypothetical protein; hypothetical protein 1286785 8916283 Nhal_1295 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526834.1 1286513 R 472759 CDS YP_003526835.1 292491396 8916284 1287171..1289024 1 NC_013960.1 TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: FAD-binding domain protein; flavodoxin/nitric oxide synthase; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: noc:Noc_1305 sulphite reductase (NADPH) flavoprotein, alpha chain; sulfite reductase (NADPH) flavoprotein subunit alpha 1289024 8916284 Nhal_1296 Nitrosococcus halophilus Nc4 sulfite reductase (NADPH) flavoprotein subunit alpha YP_003526835.1 1287171 D 472759 CDS YP_003526836.1 292491397 8916285 1289038..1290777 1 NC_013960.1 KEGG: noc:Noc_1306 sulfite reductase subunit beta; TIGRFAM: sulfite reductase (NADPH) hemoprotein, beta-component; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; sulfite reductase (NADPH) hemoprotein, beta-component 1290777 8916285 Nhal_1297 Nitrosococcus halophilus Nc4 sulfite reductase (NADPH) hemoprotein, beta-component YP_003526836.1 1289038 D 472759 CDS YP_003526837.1 292491398 8916286 1290864..1291502 1 NC_013960.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: noc:Noc_1307 peroxidase; Peroxidase 1291502 8916286 Nhal_1298 Nitrosococcus halophilus Nc4 Peroxidase YP_003526837.1 1290864 D 472759 CDS YP_003526838.1 292491399 8916287 1291829..1292416 1 NC_013960.1 hypothetical protein 1292416 8916287 Nhal_1299 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526838.1 1291829 D 472759 CDS YP_003526839.1 292491400 8916288 1292435..1292977 1 NC_013960.1 PFAM: cytochrome B561; KEGG: bph:Bphy_6508 cytochrome b561; cytochrome B561 1292977 8916288 Nhal_1300 Nitrosococcus halophilus Nc4 cytochrome B561 YP_003526839.1 1292435 D 472759 CDS YP_003526840.1 292491401 8916289 complement(1292984..1293808) 1 NC_013960.1 PFAM: peptidase M48 Ste24p; KEGG: noc:Noc_1308 peptidase M48, Ste24p; peptidase M48 Ste24p 1293808 8916289 Nhal_1301 Nitrosococcus halophilus Nc4 peptidase M48 Ste24p YP_003526840.1 1292984 R 472759 CDS YP_003526841.1 292491402 8916290 complement(1294026..1296677) 1 NC_013960.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1 membrane alanine aminopeptidase; KEGG: noc:Noc_1314 peptidase M, neutral zinc metallopeptidase, zinc-binding site; aminopeptidase N 1296677 8916290 Nhal_1302 Nitrosococcus halophilus Nc4 aminopeptidase N YP_003526841.1 1294026 R 472759 CDS YP_003526842.1 292491403 8916291 complement(1296801..1297076) 1 NC_013960.1 PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: nis:NIS_0278 RNA-binding protein RNP-1; RNP-1 like RNA-binding protein 1297076 8916291 Nhal_1303 Nitrosococcus halophilus Nc4 RNP-1 like RNA-binding protein YP_003526842.1 1296801 R 472759 CDS YP_003526843.1 292491404 8916292 complement(1297354..1298430) 1 NC_013960.1 TIGRFAM: 2-aminoethylphosphonate aminotransferase; PFAM: aminotransferase class V; KEGG: noc:Noc_1315 aminotransferase, class V; 2-aminoethylphosphonate aminotransferase 1298430 8916292 Nhal_1304 Nitrosococcus halophilus Nc4 2-aminoethylphosphonate aminotransferase YP_003526843.1 1297354 R 472759 CDS YP_003526844.1 292491405 8916293 complement(1298427..1299578) 1 NC_013960.1 TIGRFAM: phosphonopyruvate decarboxylase; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: noc:Noc_1316 thiamine pyrophosphate enzyme; phosphonopyruvate decarboxylase 1299578 8916293 Nhal_1305 Nitrosococcus halophilus Nc4 phosphonopyruvate decarboxylase YP_003526844.1 1298427 R 472759 CDS YP_003526845.1 292491406 8916294 complement(1299575..1301248) 1 NC_013960.1 TIGRFAM: phosphoenolpyruvate phosphomutase; KEGG: noc:Noc_1317 phosphoenolpyruvate phosphomutase; phosphoenolpyruvate phosphomutase 1301248 8916294 Nhal_1306 Nitrosococcus halophilus Nc4 phosphoenolpyruvate phosphomutase YP_003526845.1 1299575 R 472759 CDS YP_003526846.1 292491407 8916295 complement(1301293..1302054) 1 NC_013960.1 KEGG: noc:Noc_1318 hypothetical protein; hypothetical protein 1302054 8916295 Nhal_1307 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526846.1 1301293 R 472759 CDS YP_003526847.1 292491408 8916296 complement(1302059..1302787) 1 NC_013960.1 TIGRFAM: hopanoid-associated phosphorylase; PFAM: purine or other phosphorylase family 1; KEGG: noc:Noc_1319 purine phosphorylase family protein 1; hopanoid-associated phosphorylase 1302787 8916296 Nhal_1308 Nitrosococcus halophilus Nc4 hopanoid-associated phosphorylase YP_003526847.1 1302059 R 472759 CDS YP_003526848.1 292491409 8916297 complement(1302823..1304802) 1 NC_013960.1 KEGG: noc:Noc_1320 terpene synthase/squalene cyclase; TIGRFAM: squalene-hopene cyclase; squalene/oxidosqualene cyclase; PFAM: prenyltransferase/squalene oxidase; squalene-hopene cyclase 1304802 8916297 Nhal_1309 Nitrosococcus halophilus Nc4 squalene-hopene cyclase YP_003526848.1 1302823 R 472759 CDS YP_003526849.1 292491410 8916298 complement(1304836..1305936) 1 NC_013960.1 PFAM: Squalene/phytoene synthase; KEGG: noc:Noc_1321 squalene/phytoene synthase; Squalene/phytoene synthase 1305936 8916298 Nhal_1310 Nitrosococcus halophilus Nc4 Squalene/phytoene synthase YP_003526849.1 1304836 R 472759 CDS YP_003526850.1 292491411 8916299 1306111..1306971 1 NC_013960.1 KEGG: noc:Noc_1323 hypothetical protein; hypothetical protein 1306971 8916299 Nhal_1311 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526850.1 1306111 D 472759 CDS YP_003526851.1 292491412 8916300 1307671..1308282 1 NC_013960.1 PFAM: response regulator receiver; ANTAR domain protein; SMART: response regulator receiver; KEGG: noc:Noc_1494 response regulator; response regulator receiver 1308282 8916300 Nhal_1312 Nitrosococcus halophilus Nc4 response regulator receiver YP_003526851.1 1307671 D 472759 CDS YP_003526852.1 292491413 8916301 1308269..1309861 1 NC_013960.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; KEGG: noc:Noc_1495 PAS sensor signal transduction histidine kinase; PAS sensor protein 1309861 8916301 Nhal_1313 Nitrosococcus halophilus Nc4 PAS sensor protein YP_003526852.1 1308269 D 472759 CDS YP_003526853.1 292491414 8916302 1310422..1311240 1 NC_013960.1 PFAM: PHP domain protein; KEGG: noc:Noc_1496 capsular polysaccharide biosynthesis protein; protein-tyrosine-phosphatase 1311240 8916302 Nhal_1314 Nitrosococcus halophilus Nc4 protein-tyrosine-phosphatase YP_003526853.1 1310422 D 472759 CDS YP_003526854.1 292491415 8916303 1311332..1313605 1 NC_013960.1 KEGG: noc:Noc_1497 protein-tyrosine kinase; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; capsular exopolysaccharide family protein 1313605 8916303 Nhal_1315 Nitrosococcus halophilus Nc4 capsular exopolysaccharide family protein YP_003526854.1 1311332 D 472759 CDS YP_003526855.1 292491416 8916304 1313631..1314905 1 NC_013960.1 KEGG: noc:Noc_1499 hypothetical protein; hypothetical protein 1314905 8916304 Nhal_1316 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526855.1 1313631 D 472759 CDS YP_003526856.1 292491417 8916305 complement(1315038..1315274) 1 NC_013960.1 hypothetical protein 1315274 8916305 Nhal_1317 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526856.1 1315038 R 472759 CDS YP_003526857.1 292491418 8916306 complement(1315280..1315396) 1 NC_013960.1 hypothetical protein 1315396 8916306 Nhal_1318 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526857.1 1315280 R 472759 CDS YP_003526858.1 292491419 8916307 1315433..1316962 1 NC_013960.1 KEGG: noc:Noc_1503 binding-protein-dependent transport system protein; binding-protein-dependent transporter protein 1316962 8916307 Nhal_1319 Nitrosococcus halophilus Nc4 binding-protein-dependent transporter protein YP_003526858.1 1315433 D 472759 CDS YP_003526859.1 292491420 8916308 1317165..1317722 1 NC_013960.1 KEGG: ccv:CCV52592_0245 phosphoheptose isomerase; phosphoheptose isomerase 1317722 8916308 Nhal_1320 Nitrosococcus halophilus Nc4 phosphoheptose isomerase YP_003526859.1 1317165 D 472759 CDS YP_003526860.1 292491421 8916309 1317725..1319176 1 NC_013960.1 TIGRFAM: rfaE bifunctional protein; cytidyltransferase-related domain protein; PFAM: PfkB domain protein; cytidylyltransferase; KEGG: aeh:Mlg_2810 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; rfaE bifunctional protein 1319176 8916309 Nhal_1321 Nitrosococcus halophilus Nc4 rfaE bifunctional protein YP_003526860.1 1317725 D 472759 CDS YP_003526861.1 292491422 8916310 1319173..1319298 1 NC_013960.1 hypothetical protein 1319298 8916310 Nhal_1322 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526861.1 1319173 D 472759 CDS YP_003526862.1 292491423 8916311 1319349..1320731 1 NC_013960.1 PFAM: polysaccharide biosynthesis protein; KEGG: abo:ABO_0915 polysaccharide export protein, translocase; polysaccharide biosynthesis protein 1320731 8916311 Nhal_1323 Nitrosococcus halophilus Nc4 polysaccharide biosynthesis protein YP_003526862.1 1319349 D 472759 CDS YP_003526863.1 292491424 8916312 1320906..1321811 1 NC_013960.1 PFAM: sulfotransferase; KEGG: afr:AFE_1817 sulfotransferase domain protein; sulfotransferase 1321811 8916312 Nhal_1324 Nitrosococcus halophilus Nc4 sulfotransferase YP_003526863.1 1320906 D 472759 CDS YP_003526864.1 292491425 8916313 1321823..1322704 1 NC_013960.1 PFAM: sulfotransferase; KEGG: afr:AFE_1817 sulfotransferase domain protein; sulfotransferase 1322704 8916313 Nhal_1325 Nitrosococcus halophilus Nc4 sulfotransferase YP_003526864.1 1321823 D 472759 CDS YP_003526865.1 292491426 8916314 1323091..1324494 1 NC_013960.1 KEGG: tcx:Tcr_1683 hypothetical protein; hypothetical protein 1324494 8916314 Nhal_1326 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526865.1 1323091 D 472759 CDS YP_003526866.1 292491427 8916315 1324582..1325685 1 NC_013960.1 PFAM: glycosyl transferase family 9; KEGG: msl:Msil_0987 glycosyl transferase family 9; glycosyl transferase family protein 1325685 8916315 Nhal_1327 Nitrosococcus halophilus Nc4 glycosyl transferase family protein YP_003526866.1 1324582 D 472759 CDS YP_003526867.1 292491428 8916316 1325682..1326926 1 NC_013960.1 PFAM: glycosyl transferase group 1; KEGG: gur:Gura_1688 glycosyl transferase, group 1; group 1 glycosyl transferase 1326926 8916316 Nhal_1328 Nitrosococcus halophilus Nc4 group 1 glycosyl transferase YP_003526867.1 1325682 D 472759 CDS YP_003526868.1 292491429 8916317 1326964..1329138 1 NC_013960.1 SMART: Parallel beta-helix repeat; KEGG: hypothetical protein; hypothetical protein 1329138 8916317 Nhal_1329 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526868.1 1326964 D 472759 CDS YP_003526869.1 292491430 8916318 1329152..1330021 1 NC_013960.1 PFAM: sulfotransferase; KEGG: pat:Patl_1180 sulfotransferase; sulfotransferase 1330021 8916318 Nhal_1330 Nitrosococcus halophilus Nc4 sulfotransferase YP_003526869.1 1329152 D 472759 CDS YP_003526870.1 292491431 8916319 1330112..1331236 1 NC_013960.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: noc:Noc_1523 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase 1331236 8916319 Nhal_1331 Nitrosococcus halophilus Nc4 GDP-mannose 4,6-dehydratase YP_003526870.1 1330112 D 472759 CDS YP_003526871.1 292491432 8916320 1331342..1332568 1 NC_013960.1 KEGG: sat:SYN_01144 glycosyltransferase; hypothetical protein 1332568 8916320 Nhal_1332 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526871.1 1331342 D 472759 CDS YP_003526872.1 292491433 8916321 1332710..1333633 1 NC_013960.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: dvu:DVU0090 GDP-fucose synthetase; NAD-dependent epimerase/dehydratase 1333633 8916321 Nhal_1333 Nitrosococcus halophilus Nc4 NAD-dependent epimerase/dehydratase YP_003526872.1 1332710 D 472759 CDS YP_003526873.1 292491434 8916322 1333766..1333870 1 NC_013960.1 hypothetical protein 1333870 8916322 Nhal_1334 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526873.1 1333766 D 472759 CDS YP_003526874.1 292491435 8916323 1334066..1334890 1 NC_013960.1 PFAM: polysaccharide export protein; KEGG: noc:Noc_1525 polysaccharide export protein; polysaccharide export protein 1334890 8916323 Nhal_1335 Nitrosococcus halophilus Nc4 polysaccharide export protein YP_003526874.1 1334066 D 472759 CDS YP_003526875.1 292491436 8916324 1335052..1336566 1 NC_013960.1 KEGG: tau:Tola_2044 undecaprenyl-phosphate galactose phosphotransferase, WbaP; TIGRFAM: undecaprenyl-phosphate galactose phosphotransferase, WbaP; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; UDP-phosphate galactose phosphotransferase 1336566 8916324 Nhal_1336 Nitrosococcus halophilus Nc4 UDP-phosphate galactose phosphotransferase YP_003526875.1 1335052 D 472759 CDS YP_003526876.1 292491437 8916326 1337457..1339178 1 NC_013960.1 PFAM: glucose-methanol-choline oxidoreductase; KEGG: mxa:MXAN_3822 hypothetical protein; glucose-methanol-choline oxidoreductase 1339178 8916326 Nhal_1338 Nitrosococcus halophilus Nc4 glucose-methanol-choline oxidoreductase YP_003526876.1 1337457 D 472759 CDS YP_003526877.1 292491438 8916327 1339355..1341841 1 NC_013960.1 KEGG: noc:Noc_1802 hypothetical protein; hypothetical protein 1341841 8916327 Nhal_1339 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526877.1 1339355 D 472759 CDS YP_003526878.1 292491439 8916328 1342493..1344658 1 NC_013960.1 KEGG: noc:Noc_1800 hypothetical protein; hypothetical protein 1344658 8916328 Nhal_1340 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526878.1 1342493 D 472759 CDS YP_003526879.1 292491440 8916329 1344672..1345997 1 NC_013960.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: noc:Noc_1799 NADH-flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase 1345997 8916329 Nhal_1341 Nitrosococcus halophilus Nc4 NADH:flavin oxidoreductase/NADH oxidase YP_003526879.1 1344672 D 472759 CDS YP_003526880.1 292491441 8916330 1346059..1346226 1 NC_013960.1 hypothetical protein 1346226 8916330 Nhal_1342 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526880.1 1346059 D 472759 CDS YP_003526881.1 292491442 8916331 1346251..1347771 1 NC_013960.1 KEGG: noc:Noc_1798 hypothetical protein; hypothetical protein 1347771 8916331 Nhal_1343 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526881.1 1346251 D 472759 CDS YP_003526882.1 292491443 8916332 1347816..1349339 1 NC_013960.1 KEGG: noc:Noc_1797 hypothetical protein; hypothetical protein 1349339 8916332 Nhal_1344 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526882.1 1347816 D 472759 CDS YP_003526883.1 292491444 8916333 1349357..1351387 1 NC_013960.1 KEGG: noc:Noc_1795 hypothetical protein; hypothetical protein 1351387 8916333 Nhal_1345 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526883.1 1349357 D 472759 CDS YP_003526884.1 292491445 8916334 1351428..1353131 1 NC_013960.1 KEGG: bte:BTH_I2354 hypothetical protein; hypothetical protein 1353131 8916334 Nhal_1346 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526884.1 1351428 D 472759 CDS YP_003526885.1 292491446 8916335 1353128..1354705 1 NC_013960.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: lch:Lcho_3191 cholesterol oxidase; glucose-methanol-choline oxidoreductase 1354705 8916335 Nhal_1347 Nitrosococcus halophilus Nc4 glucose-methanol-choline oxidoreductase YP_003526885.1 1353128 D 472759 CDS YP_003526886.1 292491447 8916336 1355168..1356577 1 NC_013960.1 KEGG: noc:Noc_1791 hypothetical protein; hypothetical protein 1356577 8916336 Nhal_1348 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526886.1 1355168 D 472759 CDS YP_003526887.1 292491448 8916337 1356624..1357010 1 NC_013960.1 KEGG: noc:Noc_1790 hypothetical protein; hypothetical protein 1357010 8916337 Nhal_1349 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526887.1 1356624 D 472759 CDS YP_003526888.1 292491449 8916338 1357109..1358158 1 NC_013960.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: aeh:Mlg_2089 fructose-bisphosphate aldolase; fructose-bisphosphate aldolase 1358158 8916338 Nhal_1350 Nitrosococcus halophilus Nc4 fructose-bisphosphate aldolase YP_003526888.1 1357109 D 472759 CDS YP_003526889.1 292491450 8916339 1358420..1360765 1 NC_013960.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase; zinc finger HypF domain protein; KEGG: reh:PHG072 HypF3; (NiFe) hydrogenase maturation protein HypF 1360765 8916339 Nhal_1351 Nitrosococcus halophilus Nc4 (NiFe) hydrogenase maturation protein HypF YP_003526889.1 1358420 D 472759 CDS YP_003526890.1 292491451 8916340 complement(1360978..1363317) 1 NC_013960.1 PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; KEGG: noc:Noc_1582 malic enzyme; malate dehydrogenase 1363317 8916340 Nhal_1352 Nitrosococcus halophilus Nc4 malate dehydrogenase YP_003526890.1 1360978 R 472759 CDS YP_003526891.1 292491452 8916341 1363478..1364233 1 NC_013960.1 PFAM: phytanoyl-CoA dioxygenase; KEGG: noc:Noc_1391 phytanoyl-CoA dioxygenase; phytanoyl-CoA dioxygenase 1364233 8916341 Nhal_1353 Nitrosococcus halophilus Nc4 phytanoyl-CoA dioxygenase YP_003526891.1 1363478 D 472759 CDS YP_003526892.1 292491453 8916342 1364514..1365653 1 NC_013960.1 PFAM: patatin; KEGG: noc:Noc_1392 patatin; patatin 1365653 8916342 Nhal_1354 Nitrosococcus halophilus Nc4 patatin YP_003526892.1 1364514 D 472759 CDS YP_003526893.1 292491454 8916343 1366172..1366513 1 NC_013960.1 TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: avn:Avin_50490 hydrogenase nickel incorporation protein HypA; hydrogenase nickel insertion protein HypA 1366513 8916343 Nhal_1355 Nitrosococcus halophilus Nc4 hydrogenase nickel insertion protein HypA YP_003526893.1 1366172 D 472759 CDS YP_003526894.1 292491455 8916344 1366513..1367367 1 NC_013960.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: avn:Avin_50480 hydrogenase nickel incorporation protein HypB; hydrogenase accessory protein HypB 1367367 8916344 Nhal_1356 Nitrosococcus halophilus Nc4 hydrogenase accessory protein HypB YP_003526894.1 1366513 D 472759 CDS YP_003526895.1 292491456 8916345 1367429..1367725 1 NC_013960.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: reh:PHG073 HypC2; hydrogenase assembly chaperone hypC/hupF 1367725 8916345 Nhal_1357 Nitrosococcus halophilus Nc4 hydrogenase assembly chaperone hypC/hupF YP_003526895.1 1367429 D 472759 CDS YP_003526896.1 292491457 8916346 1367718..1368413 1 NC_013960.1 PFAM: sugar isomerase (SIS); KEGG: reh:PHG074 sedoheptulose 7-phosphate isomerase; sugar isomerase (SIS) 1368413 8916346 Nhal_1358 Nitrosococcus halophilus Nc4 sugar isomerase (SIS) YP_003526896.1 1367718 D 472759 CDS YP_003526897.1 292491458 8916347 1368410..1369564 1 NC_013960.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: bbt:BBta_0474 hydrogenase expression/formation; hydrogenase expression/formation protein HypD 1369564 8916347 Nhal_1359 Nitrosococcus halophilus Nc4 hydrogenase expression/formation protein HypD YP_003526897.1 1368410 D 472759 CDS YP_003526898.1 292491459 8916348 1369568..1370605 1 NC_013960.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; KEGG: bxe:Bxe_C0538 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE 1370605 8916348 Nhal_1360 Nitrosococcus halophilus Nc4 hydrogenase expression/formation protein HypE YP_003526898.1 1369568 D 472759 CDS YP_003526899.1 292491460 8916349 complement(1370624..1371232) 1 NC_013960.1 KEGG: pin:Ping_2907 hypothetical protein; hypothetical protein 1371232 8916349 Nhal_1361 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526899.1 1370624 R 472759 CDS YP_003526900.1 292491461 8916350 1371462..1372142 1 NC_013960.1 PFAM: Resolvase domain; MerR family transcriptional regulator; KEGG: afr:AFE_1304 transposon, resolvase; resolvase 1372142 8916350 Nhal_1362 Nitrosococcus halophilus Nc4 resolvase YP_003526900.1 1371462 D 472759 CDS YP_003526901.1 292491462 8916351 1372213..1373115 1 NC_013960.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; KEGG: AGL264Wp; transposase, IS605 OrfB family 1373115 8916351 Nhal_1363 Nitrosococcus halophilus Nc4 transposase, IS605 OrfB family YP_003526901.1 1372213 D 472759 CDS YP_003526902.1 292491463 8916352 1373154..1373888 1 NC_013960.1 KEGG: noc:Noc_1395 phosphoglycerate mutase 1; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: phosphoglycerate mutase; phosphoglycerate mutase 1 family 1373888 8916352 Nhal_1364 Nitrosococcus halophilus Nc4 phosphoglycerate mutase 1 family YP_003526902.1 1373154 D 472759 CDS YP_003526903.1 292491464 8916353 complement(1373956..1374546) 1 NC_013960.1 PFAM: protein of unknown function DUF820; KEGG: noc:Noc_0762 hypothetical protein; hypothetical protein 1374546 8916353 Nhal_1365 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526903.1 1373956 R 472759 CDS YP_003526904.1 292491465 8916354 1374802..1378302 1 NC_013960.1 KEGG: noc:Noc_1583 hypothetical protein; hypothetical protein 1378302 8916354 Nhal_1366 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526904.1 1374802 D 472759 CDS YP_003526905.1 292491466 8916355 1378620..1380401 1 NC_013960.1 PFAM: sodium/calcium exchanger membrane region; KEGG: csa:Csal_1499 sodium/calcium exchanger membrane region; sodium/calcium exchanger membrane protein 1380401 8916355 Nhal_1367 Nitrosococcus halophilus Nc4 sodium/calcium exchanger membrane protein YP_003526905.1 1378620 D 472759 CDS YP_003526906.1 292491467 8916356 complement(1380415..1381185) 1 NC_013960.1 KEGG: noc:Noc_1584 hypothetical protein; hypothetical protein 1381185 8916356 Nhal_1368 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526906.1 1380415 R 472759 CDS YP_003526907.1 292491468 8916357 1381313..1382959 1 NC_013960.1 PFAM: DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS; AAA ATPase; KEGG: noc:Noc_1585 DNA mismatch repair protein MutS-like; DNA mismatch repair protein MutS 1382959 8916357 Nhal_1369 Nitrosococcus halophilus Nc4 DNA mismatch repair protein MutS YP_003526907.1 1381313 D 472759 CDS YP_003526908.1 292491469 8916358 complement(1383044..1383709) 1 NC_013960.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: noc:Noc_1586 flavodoxin reductase (ferredoxin-NADPH reductase) family protein 1; oxidoreductase FAD/NAD(P)-binding domain-containing protein 1383709 8916358 Nhal_1370 Nitrosococcus halophilus Nc4 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_003526908.1 1383044 R 472759 CDS YP_003526909.1 292491470 8916359 1383864..1385039 1 NC_013960.1 KEGG: cti:RALTA_A0032 hippurate hydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 1385039 8916359 Nhal_1371 Nitrosococcus halophilus Nc4 amidohydrolase YP_003526909.1 1383864 D 472759 CDS YP_003526910.1 292491471 8916360 1385023..1386162 1 NC_013960.1 PFAM: glutamate--cysteine ligase; KEGG: bba:Bd2263 hypothetical protein; glutamate--cysteine ligase 1386162 8916360 Nhal_1372 Nitrosococcus halophilus Nc4 glutamate--cysteine ligase YP_003526910.1 1385023 D 472759 CDS YP_003526911.1 292491472 8916361 1386434..1386676 1 NC_013960.1 hypothetical protein 1386676 8916361 Nhal_1373 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526911.1 1386434 D 472759 CDS YP_003526912.1 292491473 8916362 1386800..1388617 1 NC_013960.1 PFAM: protein of unknown function DUF885; KEGG: noc:Noc_1385 hypothetical protein; hypothetical protein 1388617 8916362 Nhal_1374 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526912.1 1386800 D 472759 CDS YP_003526913.1 292491474 8916363 complement(1388858..1389424) 1 NC_013960.1 KEGG: noc:Noc_1386 hypothetical protein; hypothetical protein 1389424 8916363 Nhal_1375 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526913.1 1388858 R 472759 CDS YP_003526914.1 292491475 8916364 1389630..1389884 1 NC_013960.1 hypothetical protein 1389884 8916364 Nhal_1376 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526914.1 1389630 D 472759 CDS YP_003526915.1 292491476 8916365 complement(1389862..1390863) 1 NC_013960.1 KEGG: eba:ebA3601 hypothetical protein; hypothetical protein 1390863 8916365 Nhal_1377 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526915.1 1389862 R 472759 CDS YP_003526916.1 292491477 8916366 complement(1390860..1391627) 1 NC_013960.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_4767 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1391627 8916366 Nhal_1378 Nitrosococcus halophilus Nc4 short-chain dehydrogenase/reductase SDR YP_003526916.1 1390860 R 472759 CDS YP_003526917.1 292491478 8916367 complement(1391659..1393998) 1 NC_013960.1 KEGG: noc:Noc_1387 peptidase S16, ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: ATPase AAA central domain protein; peptidase S16; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16; AAA ATPase; ATP-dependent protease La 1393998 8916367 Nhal_1379 Nitrosococcus halophilus Nc4 ATP-dependent protease La YP_003526917.1 1391659 R 472759 CDS YP_003526918.1 292491479 8916368 complement(1394000..1394368) 1 NC_013960.1 PFAM: heat shock protein Hsp20; KEGG: noc:Noc_1388 heat shock protein HSP20; heat shock protein Hsp20 1394368 8916368 Nhal_1380 Nitrosococcus halophilus Nc4 heat shock protein Hsp20 YP_003526918.1 1394000 R 472759 CDS YP_003526919.1 292491480 8916369 complement(1394468..1395250) 1 NC_013960.1 PFAM: glutamine amidotransferase class-II; KEGG: noc:Noc_1389 glutamine amidotransferase, class-II; glutamine amidotransferase class-II 1395250 8916369 Nhal_1381 Nitrosococcus halophilus Nc4 glutamine amidotransferase class-II YP_003526919.1 1394468 R 472759 CDS YP_003526920.1 292491481 8916370 1395403..1396044 1 NC_013960.1 KEGG: noc:Noc_1390 GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I; GTP cyclohydrolase I 1396044 8916370 Nhal_1382 Nitrosococcus halophilus Nc4 GTP cyclohydrolase I YP_003526920.1 1395403 D 472759 CDS YP_003526921.1 292491482 8916371 complement(1396082..1396246) 1 NC_013960.1 KEGG: mfa:Mfla_0130 phosphate uptake regulator, PhoU; hypothetical protein 1396246 8916371 Nhal_1383 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526921.1 1396082 R 472759 CDS YP_003526922.1 292491483 8916372 complement(1396410..1396586) 1 NC_013960.1 hypothetical protein 1396586 8916372 Nhal_1384 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526922.1 1396410 R 472759 CDS YP_003526923.1 292491484 8916373 1396788..1397081 1 NC_013960.1 KEGG: nmu:Nmul_A0035 hypothetical protein; hypothetical protein 1397081 8916373 Nhal_1385 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526923.1 1396788 D 472759 CDS YP_003526924.1 292491485 8916374 1397228..1397545 1 NC_013960.1 KEGG: nmu:Nmul_A0032 hypothetical protein; hypothetical protein 1397545 8916374 Nhal_1386 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526924.1 1397228 D 472759 CDS YP_003526925.1 292491486 8916375 1397542..1398018 1 NC_013960.1 KEGG: mca:MCA1087 hypothetical protein; hypothetical protein 1398018 8916375 Nhal_1387 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526925.1 1397542 D 472759 CDS YP_003526926.1 292491487 8916376 1398196..1398897 1 NC_013960.1 KEGG: nmu:Nmul_A0034 hypothetical protein; hypothetical protein 1398897 8916376 Nhal_1388 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526926.1 1398196 D 472759 CDS YP_003526927.1 292491488 8916377 1399137..1399535 1 NC_013960.1 KEGG: nmu:Nmul_A0035 hypothetical protein; hypothetical protein 1399535 8916377 Nhal_1389 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526927.1 1399137 D 472759 CDS YP_003526928.1 292491489 8916378 complement(1399673..1400845) 1 NC_013960.1 PFAM: monooxygenase FAD-binding; KEGG: mmw:Mmwyl1_3720 FAD dependent oxidoreductase; monooxygenase FAD-binding protein 1400845 8916378 Nhal_1390 Nitrosococcus halophilus Nc4 monooxygenase FAD-binding protein YP_003526928.1 1399673 R 472759 CDS YP_003526929.1 292491490 8916379 complement(1400845..1402896) 1 NC_013960.1 KEGG: mmw:Mmwyl1_3721 hypothetical protein; hypothetical protein 1402896 8916379 Nhal_1391 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526929.1 1400845 R 472759 CDS YP_003526930.1 292491491 8916380 complement(1402922..1403086) 1 NC_013960.1 hypothetical protein 1403086 8916380 Nhal_1392 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526930.1 1402922 R 472759 CDS YP_003526931.1 292491492 8916381 complement(1403061..1404344) 1 NC_013960.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pna:Pnap_4334 HNH endonuclease; HNH endonuclease 1404344 8916381 Nhal_1393 Nitrosococcus halophilus Nc4 HNH endonuclease YP_003526931.1 1403061 R 472759 CDS YP_003526932.1 292491493 8916382 1405046..1405453 1 NC_013960.1 hypothetical protein 1405453 8916382 Nhal_1394 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526932.1 1405046 D 472759 CDS YP_003526933.1 292491494 8916383 1405459..1405812 1 NC_013960.1 hypothetical protein 1405812 8916383 Nhal_1395 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526933.1 1405459 D 472759 CDS YP_003526934.1 292491495 8916384 complement(1405973..1407160) 1 NC_013960.1 KEGG: nmu:Nmul_A0036 S-adenosylmethionine synthetase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; S-adenosylmethionine synthetase 1407160 8916384 Nhal_1396 Nitrosococcus halophilus Nc4 S-adenosylmethionine synthetase YP_003526934.1 1405973 R 472759 CDS YP_003526935.1 292491496 8916385 complement(1407165..1410413) 1 NC_013960.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: nmu:Nmul_A0037 ATPase, E1-E2 type; ATPase P 1410413 8916385 Nhal_1397 Nitrosococcus halophilus Nc4 ATPase P YP_003526935.1 1407165 R 472759 CDS YP_003526936.1 292491497 8916386 complement(1410712..1411374) 1 NC_013960.1 PFAM: O-methyltransferase family 3; KEGG: noc:Noc_1264 O-methyltransferase family protein; O-methyltransferase family 3 1411374 8916386 Nhal_1398 Nitrosococcus halophilus Nc4 O-methyltransferase family 3 YP_003526936.1 1410712 R 472759 CDS YP_003526937.1 292491498 8916387 complement(1411486..1412289) 1 NC_013960.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase type-1; KEGG: noc:Noc_1265 phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase 1412289 8916387 Nhal_1399 Nitrosococcus halophilus Nc4 phosphomethylpyrimidine kinase YP_003526937.1 1411486 R 472759 CDS YP_003526938.1 292491499 8916388 1412470..1413921 1 NC_013960.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; thiamineS protein; rhodanese; SMART: Rhodanese domain protein; KEGG: aeh:Mlg_1160 molybdopterin biosynthesis protein MoeB; UBA/THIF-type NAD/FAD binding protein 1413921 8916388 Nhal_1400 Nitrosococcus halophilus Nc4 UBA/THIF-type NAD/FAD binding protein YP_003526938.1 1412470 D 472759 CDS YP_003526939.1 292491500 8916389 1414327..1416147 1 NC_013960.1 PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; KEGG: noc:Noc_1266 acetolactate synthase large subunit; thiamine pyrophosphate TPP binding domain-containing protein 1416147 8916389 Nhal_1401 Nitrosococcus halophilus Nc4 thiamine pyrophosphate TPP binding domain-containing protein YP_003526939.1 1414327 D 472759 CDS YP_003526940.1 292491501 8916390 1416144..1416944 1 NC_013960.1 KEGG: noc:Noc_1267 hypothetical protein; hypothetical protein 1416944 8916390 Nhal_1402 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526940.1 1416144 D 472759 CDS YP_003526941.1 292491502 8916391 1417004..1417837 1 NC_013960.1 KEGG: noc:Noc_1268 hypothetical protein; hypothetical protein 1417837 8916391 Nhal_1403 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526941.1 1417004 D 472759 CDS YP_003526942.1 292491503 8916392 1418011..1420137 1 NC_013960.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: noc:Noc_1269 TonB-dependent receptor; TonB-dependent receptor 1420137 8916392 Nhal_1404 Nitrosococcus halophilus Nc4 TonB-dependent receptor YP_003526942.1 1418011 D 472759 CDS YP_003526943.1 292491504 8916393 1420167..1420886 1 NC_013960.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cps:CPS_1680 short chain dehydrogenase/reductase family oxidoreductase; short-chain dehydrogenase/reductase SDR 1420886 8916393 Nhal_1405 Nitrosococcus halophilus Nc4 short-chain dehydrogenase/reductase SDR YP_003526943.1 1420167 D 472759 CDS YP_003526944.1 292491505 8916394 1421085..1421969 1 NC_013960.1 KEGG: noc:Noc_1270 hypothetical protein; hypothetical protein 1421969 8916394 Nhal_1406 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526944.1 1421085 D 472759 CDS YP_003526945.1 292491506 8916395 1421979..1426478 1 NC_013960.1 KEGG: noc:Noc_1271 hybrid signal transduction histidine kinase and diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; Hpt domain protein; GGDEF domain containing protein; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: EAL domain protein; GGDEF domain containing protein; Hpt domain protein; histidine kinase A domain protein; response regulator receiver; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; diguanylate cyclase 1426478 8916395 Nhal_1407 Nitrosococcus halophilus Nc4 diguanylate cyclase YP_003526945.1 1421979 D 472759 CDS YP_003526946.1 292491507 8916396 complement(1427062..1429614) 1 NC_013960.1 PFAM: protein of unknown function DUF214; KEGG: noc:Noc_1272 hypothetical protein; hypothetical protein 1429614 8916396 Nhal_1408 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526946.1 1427062 R 472759 CDS YP_003526947.1 292491508 8916397 complement(1429611..1430300) 1 NC_013960.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_1273 ABC transporter ATPase; ABC transporter 1430300 8916397 Nhal_1409 Nitrosococcus halophilus Nc4 ABC transporter YP_003526947.1 1429611 R 472759 CDS YP_003526948.1 292491509 8916398 1430438..1430905 1 NC_013960.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: cbc:CbuK_1233 cytidine/deoxycytidylate deaminase family protein; guanine deaminase 1430905 8916398 Nhal_1410 Nitrosococcus halophilus Nc4 guanine deaminase YP_003526948.1 1430438 D 472759 CDS YP_003526949.1 292491510 8916399 1430927..1433836 1 NC_013960.1 PFAM: FAD linked oxidase; KEGG: noc:Noc_1924 FAD linked oxidase-like; FAD linked oxidase 1433836 8916399 Nhal_1411 Nitrosococcus halophilus Nc4 FAD linked oxidase YP_003526949.1 1430927 D 472759 CDS YP_003526950.1 292491511 8916400 1433880..1434560 1 NC_013960.1 PFAM: hypothetical protein; KEGG: noc:Noc_1923 abortive infection protein; hypothetical protein 1434560 8916400 Nhal_1412 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526950.1 1433880 D 472759 CDS YP_003526951.1 292491512 8916401 complement(1434943..1435302) 1 NC_013960.1 KEGG: mca:MCA0795 hypothetical protein; hypothetical protein 1435302 8916401 Nhal_1413 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526951.1 1434943 R 472759 CDS YP_003526952.1 292491513 8916402 complement(1435315..1436229) 1 NC_013960.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: sse:Ssed_2363 hypothetical protein; hypothetical protein 1436229 8916402 Nhal_1414 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526952.1 1435315 R 472759 CDS YP_003526953.1 292491514 8916403 1436484..1437338 1 NC_013960.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: gur:Gura_3104 response regulator receiver protein; AraC family transcriptional regulator 1437338 8916403 Nhal_1415 Nitrosococcus halophilus Nc4 AraC family transcriptional regulator YP_003526953.1 1436484 D 472759 CDS YP_003526954.1 292491515 8916404 1437519..1437707 1 NC_013960.1 KEGG: vvy:VV2665 hypothetical protein; hypothetical protein 1437707 8916404 Nhal_1416 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526954.1 1437519 D 472759 CDS YP_003526955.1 292491516 8916405 1437800..1438327 1 NC_013960.1 PFAM: peptidase A24A prepilin type IV; KEGG: dvl:Dvul_1114 peptidase A24A, prepilin type IV; peptidase A24A prepilin type IV 1438327 8916405 Nhal_1417 Nitrosococcus halophilus Nc4 peptidase A24A prepilin type IV YP_003526955.1 1437800 D 472759 CDS YP_003526956.1 292491517 8916406 1438354..1439694 1 NC_013960.1 SMART: ATPase AAA; KEGG: sse:Ssed_2373 hypothetical protein; ATPase AAA 1439694 8916406 Nhal_1418 Nitrosococcus halophilus Nc4 ATPase AAA YP_003526956.1 1438354 D 472759 CDS YP_003526957.1 292491518 8916407 1439745..1440542 1 NC_013960.1 TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: vsp:VS_2444 Flp pilus assembly protein CpaB; Flp pilus assembly protein CpaB 1440542 8916407 Nhal_1419 Nitrosococcus halophilus Nc4 Flp pilus assembly protein CpaB YP_003526957.1 1439745 D 472759 CDS YP_003526958.1 292491519 8916408 1440668..1442365 1 NC_013960.1 PFAM: type II and III secretion system protein; transport-associated; KEGG: swp:swp_2657 Flp pilus assembly protein; type II and III secretion system protein 1442365 8916408 Nhal_1420 Nitrosococcus halophilus Nc4 type II and III secretion system protein YP_003526958.1 1440668 D 472759 CDS YP_003526959.1 292491520 8916409 1442379..1442675 1 NC_013960.1 KEGG: pol:Bpro_2550 hypothetical protein; hypothetical protein 1442675 8916409 Nhal_1421 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526959.1 1442379 D 472759 CDS YP_003526960.1 292491521 8916410 1442710..1443906 1 NC_013960.1 KEGG: vvy:VV2658 hypothetical protein; hypothetical protein 1443906 8916410 Nhal_1422 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526960.1 1442710 D 472759 CDS YP_003526961.1 292491522 8916411 1443910..1444377 1 NC_013960.1 PFAM: TadE family protein; KEGG: ppr:PBPRB0606 hypothetical protein; TadE family protein 1444377 8916411 Nhal_1423 Nitrosococcus halophilus Nc4 TadE family protein YP_003526961.1 1443910 D 472759 CDS YP_003526962.1 292491523 8916412 1444496..1444966 1 NC_013960.1 PFAM: TadE family protein; KEGG: sse:Ssed_2368 hypothetical protein; TadE family protein 1444966 8916412 Nhal_1424 Nitrosococcus halophilus Nc4 TadE family protein YP_003526962.1 1444496 D 472759 CDS YP_003526963.1 292491524 8916413 1445100..1446287 1 NC_013960.1 KEGG: vsp:VS_2438 Flp pilus assembly protein; Flp pilus assembly protein ATPase CpaE-like protein 1446287 8916413 Nhal_1425 Nitrosococcus halophilus Nc4 Flp pilus assembly protein ATPase CpaE-like protein YP_003526963.1 1445100 D 472759 CDS YP_003526964.1 292491525 8916414 1446307..1447686 1 NC_013960.1 PFAM: type II secretion system protein E; KEGG: ppr:PBPRB0603 pilus assembly protein; type II secretion system protein E 1447686 8916414 Nhal_1426 Nitrosococcus halophilus Nc4 type II secretion system protein E YP_003526964.1 1446307 D 472759 CDS YP_003526965.1 292491526 8916415 1447707..1448678 1 NC_013960.1 PFAM: type II secretion system protein; KEGG: sse:Ssed_2365 Flp pilus assembly protein TadB; type II secretion system protein 1448678 8916415 Nhal_1427 Nitrosococcus halophilus Nc4 type II secretion system protein YP_003526965.1 1447707 D 472759 CDS YP_003526966.1 292491527 8916416 1448689..1449651 1 NC_013960.1 PFAM: type II secretion system protein; KEGG: swp:swp_2653 tight adherence TadC-like transmembrane protein; type II secretion system protein 1449651 8916416 Nhal_1428 Nitrosococcus halophilus Nc4 type II secretion system protein YP_003526966.1 1448689 D 472759 CDS YP_003526967.1 292491528 8916417 complement(1450027..1451190) 1 NC_013960.1 hypothetical protein 1451190 8916417 Nhal_1429 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526967.1 1450027 R 472759 CDS YP_003526968.1 292491529 8916418 1451955..1453193 1 NC_013960.1 TIGRFAM: ornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: noc:Noc_1711 ornithine aminotransferase; ornithine aminotransferase 1453193 8916418 Nhal_1430 Nitrosococcus halophilus Nc4 ornithine aminotransferase YP_003526968.1 1451955 D 472759 CDS YP_003526969.1 292491530 8916419 1453190..1454731 1 NC_013960.1 PFAM: aldehyde dehydrogenase; KEGG: noc:Noc_1710 aldehyde dehydrogenase; aldehyde dehydrogenase 1454731 8916419 Nhal_1431 Nitrosococcus halophilus Nc4 aldehyde dehydrogenase YP_003526969.1 1453190 D 472759 CDS YP_003526970.1 292491531 8916420 1454749..1455855 1 NC_013960.1 PFAM: indoleamine 23-dioxygenase; KEGG: noc:Noc_1709 indoleamine-pyrrole 2,3-dioxygenase; indoleamine 2,3-dioxygenase 1455855 8916420 Nhal_1432 Nitrosococcus halophilus Nc4 indoleamine 2,3-dioxygenase YP_003526970.1 1454749 D 472759 CDS YP_003526971.1 292491532 8916421 1455871..1456404 1 NC_013960.1 SMART: Water stress and Hypersensitive response domain protein; KEGG: noc:Noc_1708 hypothetical protein; Water stress and Hypersensitive response domain-containing protein 1456404 8916421 Nhal_1433 Nitrosococcus halophilus Nc4 Water stress and Hypersensitive response domain-containing protein YP_003526971.1 1455871 D 472759 CDS YP_003526972.1 292491533 8916422 1456517..1456729 1 NC_013960.1 PFAM: protein of unknown function DUF1458; KEGG: noc:Noc_1707 hypothetical protein; hypothetical protein 1456729 8916422 Nhal_1434 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526972.1 1456517 D 472759 CDS YP_003526973.1 292491534 8916423 1456840..1457301 1 NC_013960.1 PFAM: ferritin; KEGG: noc:Noc_1706 ferritin and Dps; ferritin 1457301 8916423 Nhal_1435 Nitrosococcus halophilus Nc4 ferritin YP_003526973.1 1456840 D 472759 CDS YP_003526974.1 292491535 8916424 1457350..1458357 1 NC_013960.1 KEGG: pna:Pnap_1689 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A 1458357 8916424 Nhal_1436 Nitrosococcus halophilus Nc4 molybdenum cofactor biosynthesis protein A YP_003526974.1 1457350 D 472759 CDS YP_003526975.1 292491536 8916425 1458664..1461792 1 NC_013960.1 TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; Proline dehydrogenase; KEGG: noc:Noc_1705 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; delta-1-pyrroline-5-carboxylate dehydrogenase 1461792 8916425 Nhal_1437 Nitrosococcus halophilus Nc4 delta-1-pyrroline-5-carboxylate dehydrogenase YP_003526975.1 1458664 D 472759 CDS YP_003526976.1 292491537 8916426 complement(1461813..1462259) 1 NC_013960.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: noc:Noc_1704 response regulator receiver; response regulator receiver 1462259 8916426 Nhal_1438 Nitrosococcus halophilus Nc4 response regulator receiver YP_003526976.1 1461813 R 472759 CDS YP_003526977.1 292491538 8916427 complement(1462269..1463369) 1 NC_013960.1 KEGG: noc:Noc_1703 PAS sensor, signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; hypothetical protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein; PAS sensor protein 1463369 8916427 Nhal_1439 Nitrosococcus halophilus Nc4 PAS sensor protein YP_003526977.1 1462269 R 472759 CDS YP_003526978.1 292491539 8916428 complement(1463366..1463644) 1 NC_013960.1 hypothetical protein 1463644 8916428 Nhal_1440 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526978.1 1463366 R 472759 CDS YP_003526979.1 292491540 8916429 complement(1463813..1464748) 1 NC_013960.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 1.2; KEGG: noc:Noc_1702 RpoS; sigma-70 family RNA polymerase sigma factor 1464748 8916429 Nhal_1441 Nitrosococcus halophilus Nc4 sigma-70 family RNA polymerase sigma factor YP_003526979.1 1463813 R 472759 CDS YP_003526980.1 292491541 8916430 complement(1464926..1465534) 1 NC_013960.1 PFAM: response regulator receiver; LuxR family transcriptional regulator; Sigma-70 region 4 type 2; SMART: response regulator receiver; LuxR family transcriptional regulator; KEGG: noc:Noc_1701 two component LuxR family transcriptional regulator; response regulator receiver 1465534 8916430 Nhal_1442 Nitrosococcus halophilus Nc4 response regulator receiver YP_003526980.1 1464926 R 472759 CDS YP_003526981.1 292491542 8916431 complement(1465524..1467167) 1 NC_013960.1 KEGG: noc:Noc_1700 PAS sensor, signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; PAS sensor protein 1467167 8916431 Nhal_1443 Nitrosococcus halophilus Nc4 PAS sensor protein YP_003526981.1 1465524 R 472759 CDS YP_003526982.1 292491543 8916432 complement(1467297..1468121) 1 NC_013960.1 PFAM: protein of unknown function DUF540; KEGG: noc:Noc_1699 hypothetical protein; hypothetical protein 1468121 8916432 Nhal_1444 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526982.1 1467297 R 472759 CDS YP_003526983.1 292491544 8916433 complement(1468134..1469462) 1 NC_013960.1 PFAM: carbohydrate kinase FGGY; KEGG: noc:Noc_1697 carbohydrate kinase, FGGY; carbohydrate kinase FGGY 1469462 8916433 Nhal_1445 Nitrosococcus halophilus Nc4 carbohydrate kinase FGGY YP_003526983.1 1468134 R 472759 CDS YP_003526984.1 292491545 8916434 complement(1469464..1469853) 1 NC_013960.1 KEGG: noc:Noc_1696 7-cyano-7-deazaguanine reductase; TIGRFAM: 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I; 7-cyano-7-deazaguanine reductase 1469853 8916434 Nhal_1446 Nitrosococcus halophilus Nc4 7-cyano-7-deazaguanine reductase YP_003526984.1 1469464 R 472759 CDS YP_003526985.1 292491546 8916435 1469919..1473428 1 NC_013960.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: noc:Noc_1695 chromosome segregation protein SMC; chromosome segregation protein SMC 1473428 8916435 Nhal_1447 Nitrosococcus halophilus Nc4 chromosome segregation protein SMC YP_003526985.1 1469919 D 472759 CDS YP_003526986.1 292491547 8916436 1473441..1474349 1 NC_013960.1 KEGG: noc:Noc_1694 cell division protein ZipA; TIGRFAM: cell division protein ZipA; PFAM: ZipA FtsZ-binding region; SMART: ZipA FtsZ-binding region; cell division protein ZipA 1474349 8916436 Nhal_1448 Nitrosococcus halophilus Nc4 cell division protein ZipA YP_003526986.1 1473441 D 472759 CDS YP_003526987.1 292491548 8916437 1474393..1476420 1 NC_013960.1 KEGG: noc:Noc_1693 DNA ligase (NAD+); TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; SMART: NAD-dependent DNA ligase ; BRCT domain protein; DNA-binding protein; DNA ligase, NAD-dependent 1476420 8916437 Nhal_1449 Nitrosococcus halophilus Nc4 DNA ligase, NAD-dependent YP_003526987.1 1474393 D 472759 CDS YP_003526988.1 292491549 8916438 1476550..1476744 1 NC_013960.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: noc:Noc_1692 BFD-like (2Fe-2S)-binding region; BFD domain-containing protein (2Fe-2S)-binding domain-containing protein 1476744 8916438 Nhal_1450 Nitrosococcus halophilus Nc4 BFD domain-containing protein (2Fe-2S)-binding domain-containing protein YP_003526988.1 1476550 D 472759 CDS YP_003526989.1 292491550 8916439 1476825..1477247 1 NC_013960.1 PFAM: protein of unknown function UPF0047; KEGG: noc:Noc_1691 hypothetical protein; hypothetical protein 1477247 8916439 Nhal_1451 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526989.1 1476825 D 472759 CDS YP_003526990.1 292491551 8916440 complement(1477244..1477903) 1 NC_013960.1 KEGG: noc:Noc_1690 hypothetical protein; hypothetical protein 1477903 8916440 Nhal_1452 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526990.1 1477244 R 472759 CDS YP_003526991.1 292491552 8916441 1478047..1478532 1 NC_013960.1 KEGG: noc:Noc_1689 hypothetical protein; hypothetical protein 1478532 8916441 Nhal_1453 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526991.1 1478047 D 472759 CDS YP_003526992.1 292491553 8916442 1478574..1479089 1 NC_013960.1 PFAM: outer membrane lipoprotein Slp; KEGG: noc:Noc_1619 outer membrane lipoprotein Slp; outer membrane lipoprotein Slp 1479089 8916442 Nhal_1454 Nitrosococcus halophilus Nc4 outer membrane lipoprotein Slp YP_003526992.1 1478574 D 472759 CDS YP_003526993.1 292491554 8916443 1479246..1479821 1 NC_013960.1 PFAM: conserved hypothetical protein; KEGG: noc:Noc_1688 hypothetical protein; hypothetical protein 1479821 8916443 Nhal_1455 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526993.1 1479246 D 472759 CDS YP_003526994.1 292491555 8916444 1479929..1481602 1 NC_013960.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_1687 ABC transporter ATP-binding protein; ABC transporter 1481602 8916444 Nhal_1456 Nitrosococcus halophilus Nc4 ABC transporter YP_003526994.1 1479929 D 472759 CDS YP_003526995.1 292491556 8916445 1481751..1482569 1 NC_013960.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: noc:Noc_1686 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 1482569 8916445 Nhal_1457 Nitrosococcus halophilus Nc4 glycerophosphoryl diester phosphodiesterase YP_003526995.1 1481751 D 472759 CDS YP_003526996.1 292491557 8916446 complement(1482588..1484114) 1 NC_013960.1 KEGG: noc:Noc_1756 PAS sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; hypothetical protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; PAS sensor protein 1484114 8916446 Nhal_1458 Nitrosococcus halophilus Nc4 PAS sensor protein YP_003526996.1 1482588 R 472759 CDS YP_003526997.1 292491558 8916447 1484261..1484464 1 NC_013960.1 KEGG: noc:Noc_1685 hypothetical protein; hypothetical protein 1484464 8916447 Nhal_1459 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526997.1 1484261 D 472759 CDS YP_003526998.1 292491559 8916448 1484477..1484731 1 NC_013960.1 KEGG: noc:Noc_1684 hypothetical protein; hypothetical protein 1484731 8916448 Nhal_1460 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526998.1 1484477 D 472759 CDS YP_003526999.1 292491560 8916449 1484824..1486287 1 NC_013960.1 PFAM: conserved hypothetical protein; KEGG: noc:Noc_1683 hypothetical protein; hypothetical protein 1486287 8916449 Nhal_1461 Nitrosococcus halophilus Nc4 hypothetical protein YP_003526999.1 1484824 D 472759 CDS YP_003527000.1 292491561 8916450 1486644..1487528 1 NC_013960.1 hypothetical protein 1487528 8916450 Nhal_1462 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527000.1 1486644 D 472759 CDS YP_003527001.1 292491562 8916451 1487540..1489606 1 NC_013960.1 hypothetical protein 1489606 8916451 Nhal_1463 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527001.1 1487540 D 472759 CDS YP_003527002.1 292491563 8916452 1489599..1491410 1 NC_013960.1 PFAM: ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: nam:NAMH_0683 Holliday junction DNA helicase RuvB; ATPase AAA 1491410 8916452 Nhal_1464 Nitrosococcus halophilus Nc4 ATPase AAA YP_003527002.1 1489599 D 472759 CDS YP_003527003.1 292491564 8916453 1491811..1493448 1 NC_013960.1 KEGG: scl:sce6945 ATP binding protein; hypothetical protein 1493448 8916453 Nhal_1465 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527003.1 1491811 D 472759 CDS YP_003527004.1 292491565 8916456 1494367..1494711 1 NC_013960.1 KEGG: glo:Glov_1222 transcriptional regulator; TIGRFAM: addiction module antidote protein; PFAM: hypothetical protein; SMART: hypothetical protein; addiction module antidote protein 1494711 8916456 Nhal_1468 Nitrosococcus halophilus Nc4 addiction module antidote protein YP_003527004.1 1494367 D 472759 CDS YP_003527005.1 292491566 8916457 1495143..1495370 1 NC_013960.1 KEGG: noc:Noc_1857 hypothetical protein; hypothetical protein 1495370 8916457 Nhal_1469 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527005.1 1495143 D 472759 CDS YP_003527006.1 292491567 8916458 1495814..1496044 1 NC_013960.1 KEGG: noc:Noc_1855 hypothetical protein; hypothetical protein 1496044 8916458 Nhal_1470 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527006.1 1495814 D 472759 CDS YP_003527007.1 292491568 8916460 1496261..1496509 1 NC_013960.1 KEGG: dol:Dole_1759 prevent-host-death family protein; prevent-host-death family protein 1496509 8916460 Nhal_1472 Nitrosococcus halophilus Nc4 prevent-host-death family protein YP_003527007.1 1496261 D 472759 CDS YP_003527008.1 292491569 8916462 1496981..1497409 1 NC_013960.1 PFAM: class I peptide chain release factor; KEGG: noc:Noc_0430 class I peptide chain release factor; class I peptide chain release factor 1497409 8916462 Nhal_1474 Nitrosococcus halophilus Nc4 class I peptide chain release factor YP_003527008.1 1496981 D 472759 CDS YP_003527009.1 292491570 8916463 1497409..1498167 1 NC_013960.1 PFAM: protein of unknown function DUF833; KEGG: aeh:Mlg_1255 hypothetical protein; hypothetical protein 1498167 8916463 Nhal_1475 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527009.1 1497409 D 472759 CDS YP_003527010.1 292491571 8916464 complement(1498243..1498584) 1 NC_013960.1 hypothetical protein 1498584 8916464 Nhal_1476 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527010.1 1498243 R 472759 CDS YP_003527011.1 292491572 8916465 complement(1498881..1502204) 1 NC_013960.1 KEGG: noc:Noc_2709 ATPase-like; ATPase-like protein 1502204 8916465 Nhal_1477 Nitrosococcus halophilus Nc4 ATPase-like protein YP_003527011.1 1498881 R 472759 CDS YP_003527012.1 292491573 8916466 complement(1502209..1502838) 1 NC_013960.1 KEGG: noc:Noc_2708 hypothetical protein; hypothetical protein 1502838 8916466 Nhal_1478 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527012.1 1502209 R 472759 CDS YP_003527013.1 292491574 8916467 1503146..1503493 1 NC_013960.1 KEGG: lch:Lcho_1330 peptidase S8 and S53 subtilisin kexin sedolisin; peptidase S8 and S53 subtilisin kexin sedolisin 1503493 8916467 Nhal_1479 Nitrosococcus halophilus Nc4 peptidase S8 and S53 subtilisin kexin sedolisin YP_003527013.1 1503146 D 472759 CDS YP_003527014.1 292491575 8916468 1503510..1504418 1 NC_013960.1 KEGG: hch:HCH_05488 carbamate kinase; TIGRFAM: carbamate kinase; PFAM: aspartate/glutamate/uridylate kinase; carbamate kinase 1504418 8916468 Nhal_1480 Nitrosococcus halophilus Nc4 carbamate kinase YP_003527014.1 1503510 D 472759 CDS YP_003527015.1 292491576 8916469 complement(1504415..1505770) 1 NC_013960.1 KEGG: sat:SYN_01214 cytoplasmic protein; cytoplasmic protein 1505770 8916469 Nhal_1481 Nitrosococcus halophilus Nc4 cytoplasmic protein YP_003527015.1 1504415 R 472759 CDS YP_003527016.1 292491577 8916470 complement(1505777..1507711) 1 NC_013960.1 TIGRFAM: aconitate hydratase; PFAM: aconitate hydratase domain protein; KEGG: noc:Noc_2707 aconitate hydratase; aconitate hydratase 1507711 8916470 Nhal_1482 Nitrosococcus halophilus Nc4 aconitate hydratase YP_003527016.1 1505777 R 472759 CDS YP_003527017.1 292491578 8916471 1507776..1508606 1 NC_013960.1 PFAM: lipase class 3; KEGG: ppr:PBPRA1385 hypothetical protein; lipase class 3 1508606 8916471 Nhal_1483 Nitrosococcus halophilus Nc4 lipase class 3 YP_003527017.1 1507776 D 472759 CDS YP_003527018.1 292491579 8916472 1508826..1509437 1 NC_013960.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: vsp:VS_1703 hypothetical protein; flavin reductase 1509437 8916472 Nhal_1484 Nitrosococcus halophilus Nc4 flavin reductase YP_003527018.1 1508826 D 472759 CDS YP_003527019.1 292491580 8916475 complement(1510437..1510712) 1 NC_013960.1 KEGG: gur:Gura_0037 prevent-host-death family protein; prevent-host-death family protein 1510712 8916475 Nhal_1487 Nitrosococcus halophilus Nc4 prevent-host-death family protein YP_003527019.1 1510437 R 472759 CDS YP_003527020.1 292491581 8916477 1512286..1513509 1 NC_013960.1 PFAM: transposase mutator type; KEGG: son:SO_0708 transposase mutator family protein; transposase mutator type 1513509 8916477 Nhal_1489 Nitrosococcus halophilus Nc4 transposase mutator type YP_003527020.1 1512286 D 472759 CDS YP_003527021.1 292491582 8916478 complement(1513556..1514701) 1 NC_013960.1 PFAM: transposase IS4 family protein; KEGG: aby:ABAYE3624 IS4 family transposase; transposase IS4 family protein 1514701 8916478 Nhal_1490 Nitrosococcus halophilus Nc4 transposase IS4 family protein YP_003527021.1 1513556 R 472759 CDS YP_003527022.1 292491583 8916480 complement(1515608..1518007) 1 NC_013960.1 PFAM: protein of unknown function DUF323; KEGG: pat:Patl_0402 CadC family transcriptional regulator; hypothetical protein 1518007 8916480 Nhal_1492 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527022.1 1515608 R 472759 CDS YP_003527023.1 292491584 8916481 complement(1518013..1518753) 1 NC_013960.1 SMART: TIR protein; KEGG: hap:HAPS_1951 toll-interleukin receptor; TIR protein 1518753 8916481 Nhal_1493 Nitrosococcus halophilus Nc4 TIR protein YP_003527023.1 1518013 R 472759 CDS YP_003527024.1 292491585 8916482 complement(1518809..1519498) 1 NC_013960.1 PFAM: WbqC-like family protein; KEGG: gbm:Gbem_3729 WbqC-like family protein; WbqC-like family protein 1519498 8916482 Nhal_1494 Nitrosococcus halophilus Nc4 WbqC-like family protein YP_003527024.1 1518809 R 472759 CDS YP_003527025.1 292491586 8916483 1519579..1519737 1 NC_013960.1 hypothetical protein 1519737 8916483 Nhal_1495 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527025.1 1519579 D 472759 CDS YP_003527026.1 292491587 8916484 complement(1519814..1519984) 1 NC_013960.1 hypothetical protein 1519984 8916484 Nhal_1496 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527026.1 1519814 R 472759 CDS YP_003527027.1 292491588 8916485 complement(1520077..1520910) 1 NC_013960.1 KEGG: mca:MCA1085 hypothetical protein; hypothetical protein 1520910 8916485 Nhal_1497 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527027.1 1520077 R 472759 CDS YP_003527028.1 292491589 8916486 1521038..1523278 1 NC_013960.1 PFAM: protein of unknown function DUF699 ATPase ; GCN5-related N-acetyltransferase; domain of unknown function DUF1726; KEGG: noc:Noc_2706 hypothetical protein; hypothetical protein 1523278 8916486 Nhal_1498 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527028.1 1521038 D 472759 CDS YP_003527029.1 292491590 8916487 1523362..1524630 1 NC_013960.1 PFAM: nucleotidyl transferase; KEGG: tbd:Tbd_1175 glucose-1-phosphate adenylyltransferase; nucleotidyl transferase 1524630 8916487 Nhal_1499 Nitrosococcus halophilus Nc4 nucleotidyl transferase YP_003527029.1 1523362 D 472759 CDS YP_003527030.1 292491591 8916488 1524741..1524956 1 NC_013960.1 hypothetical protein 1524956 8916488 Nhal_1500 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527030.1 1524741 D 472759 CDS YP_003527031.1 292491592 8916489 1525101..1525364 1 NC_013960.1 KEGG: noc:Noc_3005 hypothetical protein; hypothetical protein 1525364 8916489 Nhal_1501 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527031.1 1525101 D 472759 CDS YP_003527032.1 292491593 8916490 1525390..1526529 1 NC_013960.1 KEGG: nmu:Nmul_A0617 poly-gamma-glutamate synthesis protein (capsule biosynthesis protein); poly-gamma-glutamate synthesis protein 1526529 8916490 Nhal_1502 Nitrosococcus halophilus Nc4 poly-gamma-glutamate synthesis protein YP_003527032.1 1525390 D 472759 CDS YP_003527033.1 292491594 8916491 complement(1526612..1527007) 1 NC_013960.1 KEGG: saz:Sama_0534 hypothetical protein; hypothetical protein 1527007 8916491 Nhal_1503 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527033.1 1526612 R 472759 CDS YP_003527034.1 292491595 8916492 1527297..1527434 1 NC_013960.1 hypothetical protein 1527434 8916492 Nhal_1504 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527034.1 1527297 D 472759 CDS YP_003527035.1 292491596 8916493 1527556..1528281 1 NC_013960.1 PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: noc:Noc_2705 Sel1 repeat-containing protein; Sel1 domain-containing protein repeat-containing protein 1528281 8916493 Nhal_1505 Nitrosococcus halophilus Nc4 Sel1 domain-containing protein repeat-containing protein YP_003527035.1 1527556 D 472759 CDS YP_003527036.1 292491597 8916494 1528290..1529237 1 NC_013960.1 PFAM: beta-lactamase; KEGG: noc:Noc_2704 metallo-beta-lactamase superfamily protein; beta-lactamase 1529237 8916494 Nhal_1506 Nitrosococcus halophilus Nc4 beta-lactamase YP_003527036.1 1528290 D 472759 CDS YP_003527037.1 292491598 8916497 1530132..1530503 1 NC_013960.1 KEGG: gur:Gura_2468 hypothetical protein; hypothetical protein 1530503 8916497 Nhal_1509 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527037.1 1530132 D 472759 CDS YP_003527038.1 292491599 8916498 1530646..1530984 1 NC_013960.1 hypothetical protein 1530984 8916498 Nhal_1510 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527038.1 1530646 D 472759 CDS YP_003527039.1 292491600 8916499 complement(1531101..1531220) 1 NC_013960.1 hypothetical protein 1531220 8916499 Nhal_1511 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527039.1 1531101 R 472759 CDS YP_003527040.1 292491601 8916500 complement(1531240..1532331) 1 NC_013960.1 PFAM: homoserine O-succinyltransferase; KEGG: noc:Noc_2703 homoserine O-succinyltransferase; homoserine O-succinyltransferase 1532331 8916500 Nhal_1512 Nitrosococcus halophilus Nc4 homoserine O-succinyltransferase YP_003527040.1 1531240 R 472759 CDS YP_003527041.1 292491602 8916501 complement(1532369..1533214) 1 NC_013960.1 KEGG: noc:Noc_2702 hypothetical protein; hypothetical protein 1533214 8916501 Nhal_1513 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527041.1 1532369 R 472759 CDS YP_003527042.1 292491603 8916502 complement(1533687..1534139) 1 NC_013960.1 PFAM: OsmC family protein; KEGG: cti:RALTA_A3079 stress-induced protein, OsmC-like protein; OsmC family protein 1534139 8916502 Nhal_1514 Nitrosococcus halophilus Nc4 OsmC family protein YP_003527042.1 1533687 R 472759 CDS YP_003527043.1 292491604 8916503 complement(1534186..1534665) 1 NC_013960.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: noc:Noc_2767 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1534665 8916503 Nhal_1515 Nitrosococcus halophilus Nc4 glyoxalase/bleomycin resistance protein/dioxygenase YP_003527043.1 1534186 R 472759 CDS YP_003527044.1 292491605 8916504 complement(1534763..1535578) 1 NC_013960.1 PFAM: silent information regulator protein Sir2; KEGG: bav:BAV2551 NAD-dependent deacetylase (Sir2-like regulatory protein); silent information regulator protein Sir2 1535578 8916504 Nhal_1516 Nitrosococcus halophilus Nc4 silent information regulator protein Sir2 YP_003527044.1 1534763 R 472759 CDS YP_003527045.1 292491606 8916505 complement(1535845..1536987) 1 NC_013960.1 PFAM: glycosyl transferase family 2; KEGG: ank:AnaeK_0796 glycosyl transferase family 2; family 2 glycosyl transferase 1536987 8916505 Nhal_1517 Nitrosococcus halophilus Nc4 family 2 glycosyl transferase YP_003527045.1 1535845 R 472759 CDS YP_003527046.1 292491607 8916506 complement(1537055..1537813) 1 NC_013960.1 PFAM: VacJ family lipoprotein; KEGG: noc:Noc_0977 VacJ-like lipoprotein; VacJ family lipoprotein 1537813 8916506 Nhal_1518 Nitrosococcus halophilus Nc4 VacJ family lipoprotein YP_003527046.1 1537055 R 472759 CDS YP_003527047.1 292491608 8916507 complement(1537830..1539107) 1 NC_013960.1 KEGG: noc:Noc_0978 hypothetical protein; hypothetical protein 1539107 8916507 Nhal_1519 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527047.1 1537830 R 472759 CDS YP_003527048.1 292491609 8916508 complement(1539668..1541695) 1 NC_013960.1 PFAM: multicopper oxidase type 2; KEGG: afw:Anae109_0501 bilirubin oxidase; Bilirubin oxidase 1541695 8916508 Nhal_1520 Nitrosococcus halophilus Nc4 Bilirubin oxidase YP_003527048.1 1539668 R 472759 CDS YP_003527049.1 292491610 8916509 complement(1541857..1542459) 1 NC_013960.1 PFAM: sigma-54 factor interaction domain-containing protein; KEGG: ppd:Ppro_2172 sigma-54 dependent trancsriptional regulator; sigma-54 factor interaction domain-containing protein 1542459 8916509 Nhal_1521 Nitrosococcus halophilus Nc4 sigma-54 factor interaction domain-containing protein YP_003527049.1 1541857 R 472759 CDS YP_003527050.1 292491611 8916510 1542979..1544079 1 NC_013960.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: mfa:Mfla_1830 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase 1544079 8916510 Nhal_1522 Nitrosococcus halophilus Nc4 NADH:flavin oxidoreductase/NADH oxidase YP_003527050.1 1542979 D 472759 CDS YP_003527051.1 292491612 8916511 complement(1544110..1545780) 1 NC_013960.1 KEGG: dps:DP1217 hypothetical protein; hypothetical protein 1545780 8916511 Nhal_1523 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527051.1 1544110 R 472759 CDS YP_003527052.1 292491613 8916512 complement(1545777..1546580) 1 NC_013960.1 PFAM: lytic transglycosylase catalytic; KEGG: dps:DP1218 lytic transglycosylase; lytic transglycosylase 1546580 8916512 Nhal_1524 Nitrosococcus halophilus Nc4 lytic transglycosylase YP_003527052.1 1545777 R 472759 CDS YP_003527053.1 292491614 8916513 complement(1546583..1547164) 1 NC_013960.1 KEGG: dps:DP1223 hypothetical protein; hypothetical protein 1547164 8916513 Nhal_1525 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527053.1 1546583 R 472759 CDS YP_003527054.1 292491615 8916514 complement(1547161..1548795) 1 NC_013960.1 KEGG: dps:DP1217 hypothetical protein; hypothetical protein 1548795 8916514 Nhal_1526 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527054.1 1547161 R 472759 CDS YP_003527055.1 292491616 8916515 complement(1548792..1549688) 1 NC_013960.1 KEGG: dps:DP1219 hypothetical protein; hypothetical protein 1549688 8916515 Nhal_1527 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527055.1 1548792 R 472759 CDS YP_003527056.1 292491617 8916516 complement(1549688..1550353) 1 NC_013960.1 KEGG: dps:DP1220 hypothetical protein; hypothetical protein 1550353 8916516 Nhal_1528 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527056.1 1549688 R 472759 CDS YP_003527057.1 292491618 8916517 complement(1550364..1550927) 1 NC_013960.1 KEGG: dps:DP1221 hypothetical protein; hypothetical protein 1550927 8916517 Nhal_1529 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527057.1 1550364 R 472759 CDS YP_003527058.1 292491619 8916518 complement(1550991..1551983) 1 NC_013960.1 KEGG: dps:DP1222 hypothetical protein; hypothetical protein 1551983 8916518 Nhal_1530 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527058.1 1550991 R 472759 CDS YP_003527059.1 292491620 8916519 1552325..1552615 1 NC_013960.1 hypothetical protein 1552615 8916519 Nhal_1531 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527059.1 1552325 D 472759 CDS YP_003527060.1 292491621 8916520 1552665..1553633 1 NC_013960.1 PFAM: histone deacetylase superfamily; KEGG: noc:Noc_0962 histone deacetylase superfamily protein; histone deacetylase 1553633 8916520 Nhal_1532 Nitrosococcus halophilus Nc4 histone deacetylase YP_003527060.1 1552665 D 472759 CDS YP_003527061.1 292491622 8916521 1553684..1555102 1 NC_013960.1 PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: vcj:VCD_003030 hypothetical protein; hypothetical protein 1555102 8916521 Nhal_1533 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527061.1 1553684 D 472759 CDS YP_003527062.1 292491623 8916522 1555099..1556211 1 NC_013960.1 PFAM: conserved hypothetical protein; KEGG: yen:YE2117 hypothetical protein; hypothetical protein 1556211 8916522 Nhal_1534 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527062.1 1555099 D 472759 CDS YP_003527063.1 292491624 8916523 1556291..1558900 1 NC_013960.1 PFAM: protein of unknown function UPF0182; KEGG: noc:Noc_0961 hypothetical protein; hypothetical protein 1558900 8916523 Nhal_1535 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527063.1 1556291 D 472759 CDS YP_003527064.1 292491625 8916524 complement(1558921..1560189) 1 NC_013960.1 PFAM: sodium/hydrogen exchanger; KEGG: noc:Noc_0960 sodium/hydrogen exchanger; sodium/hydrogen exchanger 1560189 8916524 Nhal_1536 Nitrosococcus halophilus Nc4 sodium/hydrogen exchanger YP_003527064.1 1558921 R 472759 CDS YP_003527065.1 292491626 8916525 complement(1560320..1561606) 1 NC_013960.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: afe:Lferr_1055 nickel-dependent hydrogenase large subunit; nickel-dependent hydrogenase large subunit 1561606 8916525 Nhal_1537 Nitrosococcus halophilus Nc4 nickel-dependent hydrogenase large subunit YP_003527065.1 1560320 R 472759 CDS YP_003527066.1 292491627 8916526 complement(1561603..1562424) 1 NC_013960.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: afr:AFE_0938 [NiFe] hydrogenase, subunit delta; NADH ubiquinone oxidoreductase 20 kDa subunit 1562424 8916526 Nhal_1538 Nitrosococcus halophilus Nc4 NADH ubiquinone oxidoreductase 20 kDa subunit YP_003527066.1 1561603 R 472759 CDS YP_003527067.1 292491628 8916527 complement(1562429..1563283) 1 NC_013960.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: afr:AFE_0939 [NiFe] hydrogenase, subunit gamma; oxidoreductase FAD/NAD(P)-binding domain-containing protein 1563283 8916527 Nhal_1539 Nitrosococcus halophilus Nc4 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_003527067.1 1562429 R 472759 CDS YP_003527068.1 292491629 8916528 complement(1563276..1564472) 1 NC_013960.1 KEGG: afr:AFE_0940 [NiFe] hydrogenase subunit beta; (NiFe) hydrogenase subunit beta 1564472 8916528 Nhal_1540 Nitrosococcus halophilus Nc4 (NiFe) hydrogenase subunit beta YP_003527068.1 1563276 R 472759 CDS YP_003527069.1 292491630 8916529 complement(join(1564541..1565122,1565122..1565610)) 1 NC_013960.1 KEGG: mch:Mchl_5622 transposase and inactivated derivatives-like protein; hypothetical protein 1565610 8916529 Nhal_1541 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527069.1 1564541 R 472759 CDS YP_003527070.1 292491631 8916530 complement(1565738..1566166) 1 NC_013960.1 KEGG: mca:MCA2498 cysteine-rich repeat-containing protein; hypothetical protein 1566166 8916530 Nhal_1542 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527070.1 1565738 R 472759 CDS YP_003527071.1 292491632 8916532 1566759..1567982 1 NC_013960.1 PFAM: transposase mutator type; KEGG: son:SO_0708 transposase mutator family protein; transposase mutator type 1567982 8916532 Nhal_1544 Nitrosococcus halophilus Nc4 transposase mutator type YP_003527071.1 1566759 D 472759 CDS YP_003527072.1 292491633 8916534 complement(1568343..1570655) 1 NC_013960.1 KEGG: noc:Noc_0550 hypothetical protein; hypothetical protein 1570655 8916534 Nhal_1546 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527072.1 1568343 R 472759 CDS YP_003527073.1 292491634 8916535 complement(1570945..1571472) 1 NC_013960.1 KEGG: noc:Noc_0550 hypothetical protein; hypothetical protein 1571472 8916535 Nhal_1547 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527073.1 1570945 R 472759 CDS YP_003527074.1 292491635 8916536 complement(1571762..1572289) 1 NC_013960.1 KEGG: noc:Noc_0550 hypothetical protein; hypothetical protein 1572289 8916536 Nhal_1548 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527074.1 1571762 R 472759 CDS YP_003527075.1 292491636 8916537 1572388..1572918 1 NC_013960.1 hypothetical protein 1572918 8916537 Nhal_1549 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527075.1 1572388 D 472759 CDS YP_003527076.1 292491637 8916538 complement(1573096..1573503) 1 NC_013960.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: bbt:BBta_7459 nodulation protein W, two-component transcriptional regulator; response regulator receiver 1573503 8916538 Nhal_1550 Nitrosococcus halophilus Nc4 response regulator receiver YP_003527076.1 1573096 R 472759 CDS YP_003527077.1 292491638 8916539 complement(1573698..1574318) 1 NC_013960.1 PFAM: response regulator receiver; LuxR family transcriptional regulator; Sigma-70 region 4 type 2; SMART: response regulator receiver; LuxR family transcriptional regulator; KEGG: sfu:Sfum_0582 two component transcriptional regulator, LuxR family; response regulator receiver 1574318 8916539 Nhal_1551 Nitrosococcus halophilus Nc4 response regulator receiver YP_003527077.1 1573698 R 472759 CDS YP_003527078.1 292491639 8916540 1574505..1575674 1 NC_013960.1 KEGG: bte:BTH_II2167 hypothetical protein; hypothetical protein 1575674 8916540 Nhal_1552 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527078.1 1574505 D 472759 CDS YP_003527079.1 292491640 8916541 1575662..1577125 1 NC_013960.1 PFAM: carbohydrate-selective porin OprB; KEGG: tmz:Tmz1t_1477 carbohydrate-selective porin OprB; carbohydrate-selective porin OprB 1577125 8916541 Nhal_1553 Nitrosococcus halophilus Nc4 carbohydrate-selective porin OprB YP_003527079.1 1575662 D 472759 CDS YP_003527080.1 292491641 8916542 1577138..1578862 1 NC_013960.1 PFAM: hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: noc:Noc_1851 hypothetical protein; hypothetical protein 1578862 8916542 Nhal_1554 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527080.1 1577138 D 472759 CDS YP_003527081.1 292491642 8916543 1578967..1579419 1 NC_013960.1 KEGG: noc:Noc_1850 nitric-oxide reductase; nitric-oxide reductase 1579419 8916543 Nhal_1555 Nitrosococcus halophilus Nc4 nitric-oxide reductase YP_003527081.1 1578967 D 472759 CDS YP_003527082.1 292491643 8916544 1579439..1580785 1 NC_013960.1 PFAM: cytochrome C oxidase subunit I; KEGG: noc:Noc_1849 cytochrome C oxidase subunit I; nitric-oxide reductase 1580785 8916544 Nhal_1556 Nitrosococcus halophilus Nc4 nitric-oxide reductase YP_003527082.1 1579439 D 472759 CDS YP_003527083.1 292491644 8916545 1580797..1581621 1 NC_013960.1 PFAM: ATPase associated with various cellular activities AAA_5; CbbQ/NirQ/NorQ domain protein; KEGG: noc:Noc_1848 ATPase; ATPase AAA 1581621 8916545 Nhal_1557 Nitrosococcus halophilus Nc4 ATPase AAA YP_003527083.1 1580797 D 472759 CDS YP_003527084.1 292491645 8916546 1581627..1583561 1 NC_013960.1 PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: noc:Noc_1847 nitric oxide reductase activation protein; von Willebrand factor A 1583561 8916546 Nhal_1558 Nitrosococcus halophilus Nc4 von Willebrand factor A YP_003527084.1 1581627 D 472759 CDS YP_003527085.1 292491646 8916547 complement(1583639..1586962) 1 NC_013960.1 KEGG: noc:Noc_1846 hypothetical protein; hypothetical protein 1586962 8916547 Nhal_1559 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527085.1 1583639 R 472759 CDS YP_003527086.1 292491647 8916548 complement(1586979..1587215) 1 NC_013960.1 KEGG: noc:Noc_1845 hypothetical protein; hypothetical protein 1587215 8916548 Nhal_1560 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527086.1 1586979 R 472759 CDS YP_003527087.1 292491648 8916549 complement(1587270..1587575) 1 NC_013960.1 KEGG: dat:HRM2_43230 hypothetical protein; hypothetical protein 1587575 8916549 Nhal_1561 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527087.1 1587270 R 472759 CDS YP_003527088.1 292491649 8916550 complement(1587761..1588801) 1 NC_013960.1 KEGG: noc:Noc_1844 hypothetical protein; hypothetical protein 1588801 8916550 Nhal_1562 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527088.1 1587761 R 472759 CDS YP_003527089.1 292491650 8916551 complement(1589203..1591587) 1 NC_013960.1 KEGG: noc:Noc_1446 phosphoenolpyruvate synthase; TIGRFAM: phosphoenolpyruvate synthase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; PEP-utilizing protein; phosphoenolpyruvate synthase 1591587 8916551 Nhal_1563 Nitrosococcus halophilus Nc4 phosphoenolpyruvate synthase YP_003527089.1 1589203 R 472759 CDS YP_003527090.1 292491651 8916552 complement(1591919..1592425) 1 NC_013960.1 KEGG: psa:PST_1576 hypothetical protein; hypothetical protein 1592425 8916552 Nhal_1564 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527090.1 1591919 R 472759 CDS YP_003527091.1 292491652 8916555 complement(1594524..1595351) 1 NC_013960.1 PFAM: peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: noc:Noc_0490 peptidoglycan-binding LysM; peptidoglycan-binding LysM 1595351 8916555 Nhal_1567 Nitrosococcus halophilus Nc4 peptidoglycan-binding LysM YP_003527091.1 1594524 R 472759 CDS YP_003527092.1 292491653 8916556 complement(1595554..1596648) 1 NC_013960.1 KEGG: noc:Noc_0493 hypothetical protein; hypothetical protein 1596648 8916556 Nhal_1568 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527092.1 1595554 R 472759 CDS YP_003527093.1 292491654 8916557 1596824..1598095 1 NC_013960.1 KEGG: mno:Mnod_0205 hypothetical protein; hypothetical protein 1598095 8916557 Nhal_1569 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527093.1 1596824 D 472759 CDS YP_003527094.1 292491655 8916558 complement(1598667..1598981) 1 NC_013960.1 PFAM: protein of unknown function DUF883 ElaB; KEGG: noc:Noc_1454 hypothetical protein; hypothetical protein 1598981 8916558 Nhal_1570 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527094.1 1598667 R 472759 CDS YP_003527095.1 292491656 8916559 1599262..1600254 1 NC_013960.1 PFAM: diacylglycerol kinase; SMART: diacylglycerol kinase; KEGG: noc:Noc_1455 hypothetical protein; diacylglycerol kinase 1600254 8916559 Nhal_1571 Nitrosococcus halophilus Nc4 diacylglycerol kinase YP_003527095.1 1599262 D 472759 CDS YP_003527096.1 292491657 8916560 complement(1600280..1600438) 1 NC_013960.1 PFAM: protein of unknown function UPF0057; KEGG: noc:Noc_1445 hypothetical protein; hypothetical protein 1600438 8916560 Nhal_1572 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527096.1 1600280 R 472759 CDS YP_003527097.1 292491658 8916561 complement(1600461..1601537) 1 NC_013960.1 PFAM: protein of unknown function UPF0118; KEGG: noc:Noc_0491 hypothetical protein; hypothetical protein 1601537 8916561 Nhal_1573 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527097.1 1600461 R 472759 CDS YP_003527098.1 292491659 8916562 1601704..1602027 1 NC_013960.1 KEGG: gsu:GSU0710 hypothetical protein; hypothetical protein 1602027 8916562 Nhal_1574 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527098.1 1601704 D 472759 CDS YP_003527099.1 292491660 8916563 complement(1602077..1602424) 1 NC_013960.1 hypothetical protein 1602424 8916563 Nhal_1575 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527099.1 1602077 R 472759 CDS YP_003527100.1 292491661 8916564 complement(1602424..1603455) 1 NC_013960.1 PFAM: Spore germination protein; amino acid permease-associated region; KEGG: tcx:Tcr_1066 amino acid permease-associated region; Spore germination protein 1603455 8916564 Nhal_1576 Nitrosococcus halophilus Nc4 Spore germination protein YP_003527100.1 1602424 R 472759 CDS YP_003527101.1 292491662 8916565 complement(1603581..1604816) 1 NC_013960.1 KEGG: sat:SYN_02641 cofactor-independent phosphoglycerate mutase; TIGRFAM: phosphonopyruvate decarboxylase-related protein; PFAM: metalloenzyme domain protein; phosphonopyruvate decarboxylase-like protein 1604816 8916565 Nhal_1577 Nitrosococcus halophilus Nc4 phosphonopyruvate decarboxylase-like protein YP_003527101.1 1603581 R 472759 CDS YP_003527102.1 292491663 8916566 complement(1604865..1605803) 1 NC_013960.1 TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: mxa:MXAN_2372 6-phosphofructokinase; 1-phosphofructokinase 1605803 8916566 Nhal_1578 Nitrosococcus halophilus Nc4 1-phosphofructokinase YP_003527102.1 1604865 R 472759 CDS YP_003527103.1 292491664 8916569 complement(1606290..1606538) 1 NC_013960.1 hypothetical protein 1606538 8916569 Nhal_1581 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527103.1 1606290 R 472759 CDS YP_003527104.1 292491665 8916570 complement(1606631..1609318) 1 NC_013960.1 PFAM: CoA-binding protein; GCN5-related N-acetyltransferase; ATP-grasp domain protein; KEGG: pol:Bpro_1205 CoA-binding; CoA-binding protein 1609318 8916570 Nhal_1582 Nitrosococcus halophilus Nc4 CoA-binding protein YP_003527104.1 1606631 R 472759 CDS YP_003527105.1 292491666 8916571 complement(1609376..1609816) 1 NC_013960.1 KEGG: maq:Maqu_2932 hypothetical protein; hypothetical protein 1609816 8916571 Nhal_1583 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527105.1 1609376 R 472759 CDS YP_003527106.1 292491667 8916572 complement(1610120..1611010) 1 NC_013960.1 SMART: Calcium-binding EF-hand-containing protein; KEGG: noc:Noc_0267 calcium-binding EF-hand; calcium-binding EF-hand protein-containing protein 1611010 8916572 Nhal_1584 Nitrosococcus halophilus Nc4 calcium-binding EF-hand protein-containing protein YP_003527106.1 1610120 R 472759 CDS YP_003527107.1 292491668 8916573 complement(1611133..1614078) 1 NC_013960.1 TIGRFAM: transaldolase; PFAM: transaldolase; transketolase domain protein; transketolase; KEGG: noc:Noc_0268 transketolase; transaldolase 1614078 8916573 Nhal_1585 Nitrosococcus halophilus Nc4 transaldolase YP_003527107.1 1611133 R 472759 CDS YP_003527108.1 292491669 8916574 complement(1614101..1614748) 1 NC_013960.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: noc:Noc_0270 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 1614748 8916574 Nhal_1586 Nitrosococcus halophilus Nc4 PA-phosphatase-like phosphoesterase YP_003527108.1 1614101 R 472759 CDS YP_003527109.1 292491670 8916575 1614877..1615536 1 NC_013960.1 PFAM: isochorismatase hydrolase; KEGG: noc:Noc_0271 nicotinamidase; nicotinamidase 1615536 8916575 Nhal_1587 Nitrosococcus halophilus Nc4 nicotinamidase YP_003527109.1 1614877 D 472759 CDS YP_003527110.1 292491671 8916576 complement(1615584..1616798) 1 NC_013960.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: met:M446_3040 2-alkenal reductase; peptidase S1 and S6 chymotrypsin/Hap 1616798 8916576 Nhal_1588 Nitrosococcus halophilus Nc4 peptidase S1 and S6 chymotrypsin/Hap YP_003527110.1 1615584 R 472759 CDS YP_003527111.1 292491672 8916577 1617003..1618928 1 NC_013960.1 KEGG: noc:Noc_0272 peptidase M41, FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; ATP-dependent metalloprotease FtsH 1618928 8916577 Nhal_1589 Nitrosococcus halophilus Nc4 ATP-dependent metalloprotease FtsH YP_003527111.1 1617003 D 472759 CDS YP_003527112.1 292491673 8916578 complement(1618948..1619937) 1 NC_013960.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: noc:Noc_0273 sigma-54 specific transcriptional regulator, fis famliy; Fis family transcriptional regulator 1619937 8916578 Nhal_1590 Nitrosococcus halophilus Nc4 Fis family transcriptional regulator YP_003527112.1 1618948 R 472759 CDS YP_003527113.1 292491674 8916580 complement(1620599..1620802) 1 NC_013960.1 PFAM: CsbD family protein; KEGG: noc:Noc_0274 CsbD-like protein; CsbD family protein 1620802 8916580 Nhal_1592 Nitrosococcus halophilus Nc4 CsbD family protein YP_003527113.1 1620599 R 472759 CDS YP_003527114.1 292491675 8916581 complement(1620903..1621238) 1 NC_013960.1 KEGG: noc:Noc_0979 hypothetical protein; hypothetical protein 1621238 8916581 Nhal_1593 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527114.1 1620903 R 472759 CDS YP_003527115.1 292491676 8916582 complement(1621313..1621855) 1 NC_013960.1 PFAM: PRC-barrel domain protein; KEGG: noc:Noc_0473 peptidoglycan-binding LysM; PRC-barrel domain-containing protein 1621855 8916582 Nhal_1594 Nitrosococcus halophilus Nc4 PRC-barrel domain-containing protein YP_003527115.1 1621313 R 472759 CDS YP_003527116.1 292491677 8916583 1622139..1623467 1 NC_013960.1 KEGG: rpt:Rpal_3822 hypothetical protein; hypothetical protein 1623467 8916583 Nhal_1595 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527116.1 1622139 D 472759 CDS YP_003527117.1 292491678 8916584 1623564..1624475 1 NC_013960.1 PFAM: diacylglycerol kinase; SMART: diacylglycerol kinase; KEGG: scl:sce9292 hypothetical protein; diacylglycerol kinase 1624475 8916584 Nhal_1596 Nitrosococcus halophilus Nc4 diacylglycerol kinase YP_003527117.1 1623564 D 472759 CDS YP_003527118.1 292491679 8916585 complement(1624572..1624877) 1 NC_013960.1 KEGG: noc:Noc_0980 hypothetical protein; hypothetical protein 1624877 8916585 Nhal_1597 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527118.1 1624572 R 472759 CDS YP_003527119.1 292491680 8916586 complement(1624929..1625063) 1 NC_013960.1 KEGG: rpt:Rpal_1242 hypothetical protein; hypothetical protein 1625063 8916586 Nhal_1598 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527119.1 1624929 R 472759 CDS YP_003527120.1 292491681 8916587 complement(1625110..1625394) 1 NC_013960.1 KEGG: net:Neut_0488 hypothetical protein; hypothetical protein 1625394 8916587 Nhal_1599 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527120.1 1625110 R 472759 CDS YP_003527121.1 292491682 8916588 1625843..1626388 1 NC_013960.1 PFAM: transposase IS605 OrfB; KEGG: noc:Noc_1587 transposase; transposase IS605 OrfB 1626388 8916588 Nhal_1600 Nitrosococcus halophilus Nc4 transposase IS605 OrfB YP_003527121.1 1625843 D 472759 CDS YP_003527122.1 292491683 8916589 1626451..1626891 1 NC_013960.1 KEGG: noc:Noc_0275 hypothetical protein; hypothetical protein 1626891 8916589 Nhal_1601 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527122.1 1626451 D 472759 CDS YP_003527123.1 292491684 8916590 1627433..1628122 1 NC_013960.1 PFAM: LuxR family transcriptional regulator; Sigma-70 region 4 type 2; response regulator receiver; SMART: LuxR family transcriptional regulator; response regulator receiver; KEGG: noc:Noc_0276 two component transcription LuxR family regulatory protein; LuxR family transcriptional regulator 1628122 8916590 Nhal_1602 Nitrosococcus halophilus Nc4 LuxR family transcriptional regulator YP_003527123.1 1627433 D 472759 CDS YP_003527124.1 292491685 8916591 complement(1628278..1628448) 1 NC_013960.1 PFAM: protein of unknown function DUF1328; KEGG: noc:Noc_0484 hypothetical protein; hypothetical protein 1628448 8916591 Nhal_1603 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527124.1 1628278 R 472759 CDS YP_003527125.1 292491686 8916592 1629088..1629606 1 NC_013960.1 KEGG: eba:ebA4524 hypothetical protein; hypothetical protein 1629606 8916592 Nhal_1604 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527125.1 1629088 D 472759 CDS YP_003527126.1 292491687 8916593 complement(1629840..1630553) 1 NC_013960.1 PFAM: PRC-barrel domain protein; KEGG: noc:Noc_0473 peptidoglycan-binding LysM; PRC-barrel domain-containing protein 1630553 8916593 Nhal_1605 Nitrosococcus halophilus Nc4 PRC-barrel domain-containing protein YP_003527126.1 1629840 R 472759 CDS YP_003527127.1 292491688 8916594 complement(1631344..1631517) 1 NC_013960.1 KEGG: noc:Noc_0980 hypothetical protein; hypothetical protein 1631517 8916594 Nhal_1606 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527127.1 1631344 R 472759 CDS YP_003527128.1 292491689 8916595 1631787..1632095 1 NC_013960.1 PFAM: transport-associated; SMART: transport-associated and nodulation region; KEGG: noc:Noc_0278 periplasmic or secreted lipoprotein; transporter 1632095 8916595 Nhal_1607 Nitrosococcus halophilus Nc4 transporter YP_003527128.1 1631787 D 472759 CDS YP_003527129.1 292491690 8916596 complement(1632127..1633287) 1 NC_013960.1 PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: noc:Noc_0279 ABC transporter ATPase subunit; ABC transporter 1633287 8916596 Nhal_1608 Nitrosococcus halophilus Nc4 ABC transporter YP_003527129.1 1632127 R 472759 CDS YP_003527130.1 292491691 8916597 complement(1633333..1634178) 1 NC_013960.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: noc:Noc_0280 ABC transporter inner membrane subunit; binding-protein-dependent transporters inner membrane component 1634178 8916597 Nhal_1609 Nitrosococcus halophilus Nc4 binding-protein-dependent transporters inner membrane component YP_003527130.1 1633333 R 472759 CDS YP_003527131.1 292491692 8916598 complement(1634178..1635056) 1 NC_013960.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: noc:Noc_0281 ABC transporter inner membrane subunit; binding-protein-dependent transporters inner membrane component 1635056 8916598 Nhal_1610 Nitrosococcus halophilus Nc4 binding-protein-dependent transporters inner membrane component YP_003527131.1 1634178 R 472759 CDS YP_003527132.1 292491693 8916599 complement(1635053..1636303) 1 NC_013960.1 PFAM: extracellular solute-binding protein family 1; KEGG: noc:Noc_0282 extracellular solute-binding protein; family 1 extracellular solute-binding protein 1636303 8916599 Nhal_1611 Nitrosococcus halophilus Nc4 family 1 extracellular solute-binding protein YP_003527132.1 1635053 R 472759 CDS YP_003527133.1 292491694 8916600 complement(1636278..1639667) 1 NC_013960.1 KEGG: aeh:Mlg_1471 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ATP-cone domain protein; SMART: Hedgehog/intein hint domain protein; ribonucleoside-triphosphate reductase 1639667 8916600 Nhal_1612 Nitrosococcus halophilus Nc4 ribonucleoside-triphosphate reductase YP_003527133.1 1636278 R 472759 CDS YP_003527134.1 292491695 8916601 complement(1639932..1640849) 1 NC_013960.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: noc:Noc_1919 LysR family transcriptional regulator; LysR family transcriptional regulator 1640849 8916601 Nhal_1613 Nitrosococcus halophilus Nc4 LysR family transcriptional regulator YP_003527134.1 1639932 R 472759 CDS YP_003527135.1 292491696 8916602 complement(1641902..1642798) 1 NC_013960.1 KEGG: noc:Noc_1915 hypothetical protein; hypothetical protein 1642798 8916602 Nhal_1614 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527135.1 1641902 R 472759 CDS YP_003527136.1 292491697 8916603 complement(1643214..1644275) 1 NC_013960.1 TIGRFAM: formate dehydrogenase, subunit gamma; KEGG: aeh:Mlg_1289 formate dehydrogenase subunit gamma; formate dehydrogenase subunit gamma 1644275 8916603 Nhal_1615 Nitrosococcus halophilus Nc4 formate dehydrogenase subunit gamma YP_003527136.1 1643214 R 472759 CDS YP_003527137.1 292491698 8916604 complement(1644294..1644470) 1 NC_013960.1 hypothetical protein 1644470 8916604 Nhal_1616 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527137.1 1644294 R 472759 CDS YP_003527138.1 292491699 8916605 complement(1644521..1644724) 1 NC_013960.1 hypothetical protein 1644724 8916605 Nhal_1617 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527138.1 1644521 R 472759 CDS YP_003527139.1 292491700 8916606 complement(1644756..1645343) 1 NC_013960.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: aeh:Mlg_1287 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 1645343 8916606 Nhal_1618 Nitrosococcus halophilus Nc4 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003527139.1 1644756 R 472759 CDS YP_003527140.1 292491701 8916607 complement(1645359..1648352) 1 NC_013960.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: aeh:Mlg_1286 formate dehydrogenase subunit alpha; molybdopterin oxidoreductase 1648352 8916607 Nhal_1619 Nitrosococcus halophilus Nc4 molybdopterin oxidoreductase YP_003527140.1 1645359 R 472759 CDS YP_003527141.1 292491702 8916608 complement(1648418..1648627) 1 NC_013960.1 KEGG: aeh:Mlg_1285 hypothetical protein; hypothetical protein 1648627 8916608 Nhal_1620 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527141.1 1648418 R 472759 CDS YP_003527142.1 292491703 8916609 complement(1648666..1649304) 1 NC_013960.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: aeh:Mlg_1284 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein 1649304 8916609 Nhal_1621 Nitrosococcus halophilus Nc4 cytoplasmic chaperone TorD family protein YP_003527142.1 1648666 R 472759 CDS YP_003527143.1 292491704 8916610 complement(1649304..1650977) 1 NC_013960.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: aeh:Mlg_1283 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 1650977 8916610 Nhal_1622 Nitrosococcus halophilus Nc4 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003527143.1 1649304 R 472759 CDS YP_003527144.1 292491705 8916611 complement(1651003..1651581) 1 NC_013960.1 KEGG: aeh:Mlg_1282 hypothetical protein; hypothetical protein 1651581 8916611 Nhal_1623 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527144.1 1651003 R 472759 CDS YP_003527145.1 292491706 8916612 complement(1651541..1652056) 1 NC_013960.1 KEGG: azo:azo3487 hypothetical protein; hypothetical protein 1652056 8916612 Nhal_1624 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527145.1 1651541 R 472759 CDS YP_003527146.1 292491707 8916613 1652378..1653112 1 NC_013960.1 PFAM: IS1 transposase; KEGG: prw:PsycPRwf_1938 IS1 transposase; IS1 transposase 1653112 8916613 Nhal_1625 Nitrosococcus halophilus Nc4 IS1 transposase YP_003527146.1 1652378 D 472759 CDS YP_003527147.1 292491708 8916614 1653214..1653963 1 NC_013960.1 KEGG: sme:SMc02315 hypothetical protein; hypothetical protein 1653963 8916614 Nhal_1626 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527147.1 1653214 D 472759 CDS YP_003527148.1 292491709 8916615 1654131..1654460 1 NC_013960.1 KEGG: sme:SMc02316 hypothetical protein; hypothetical protein 1654460 8916615 Nhal_1627 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527148.1 1654131 D 472759 CDS YP_003527149.1 292491710 8916616 complement(1654493..1655122) 1 NC_013960.1 PFAM: IS1 transposase; KEGG: vvy:VV0559 transposase B; IS1 transposase 1655122 8916616 Nhal_1628 Nitrosococcus halophilus Nc4 IS1 transposase YP_003527149.1 1654493 R 472759 CDS YP_003527150.1 292491711 8916617 complement(1655156..1655320) 1 NC_013960.1 KEGG: prw:PsycPRwf_1938 IS1 transposase; hypothetical protein 1655320 8916617 Nhal_1629 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527150.1 1655156 R 472759 CDS YP_003527151.1 292491712 8916618 complement(1655382..1655732) 1 NC_013960.1 KEGG: ara:Arad_7600 hypothetical protein; hypothetical protein 1655732 8916618 Nhal_1630 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527151.1 1655382 R 472759 CDS YP_003527152.1 292491713 8916619 complement(1655734..1656978) 1 NC_013960.1 KEGG: nha:Nham_3012 HPr kinase; hypothetical protein 1656978 8916619 Nhal_1631 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527152.1 1655734 R 472759 CDS YP_003527153.1 292491714 8916620 complement(1657076..1658047) 1 NC_013960.1 PFAM: patatin; KEGG: tgr:Tgr7_1058 patatin; patatin 1658047 8916620 Nhal_1632 Nitrosococcus halophilus Nc4 patatin YP_003527153.1 1657076 R 472759 CDS YP_003527154.1 292491715 8916622 complement(1658965..1660230) 1 NC_013960.1 KEGG: noc:Noc_1913 hypothetical protein; hypothetical protein 1660230 8916622 Nhal_1634 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527154.1 1658965 R 472759 CDS YP_003527155.1 292491716 8916623 complement(1660320..1662488) 1 NC_013960.1 KEGG: noc:Noc_1912 phospholipase D/transphosphatidylase; PFAM: SNARE associated Golgi protein; phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase; phospholipase D 1662488 8916623 Nhal_1635 Nitrosococcus halophilus Nc4 phospholipase D YP_003527155.1 1660320 R 472759 CDS YP_003527156.1 292491717 8916624 complement(1662675..1664018) 1 NC_013960.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: noc:Noc_1911 two component sigma-54 specific, fis family transcriptional regulator; Fis family transcriptional regulator 1664018 8916624 Nhal_1636 Nitrosococcus halophilus Nc4 Fis family transcriptional regulator YP_003527156.1 1662675 R 472759 CDS YP_003527157.1 292491718 8916626 1664677..1665987 1 NC_013960.1 KEGG: gsu:GSU1615 hypothetical protein; hypothetical protein 1665987 8916626 Nhal_1638 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527157.1 1664677 D 472759 CDS YP_003527158.1 292491719 8916627 1665984..1668416 1 NC_013960.1 PFAM: peptidase S16; KEGG: tgr:Tgr7_0259 peptidase S16; peptidase S16 1668416 8916627 Nhal_1639 Nitrosococcus halophilus Nc4 peptidase S16 YP_003527158.1 1665984 D 472759 CDS YP_003527159.1 292491720 8916628 1668382..1669182 1 NC_013960.1 KEGG: pla:Plav_0741 hypothetical protein; hypothetical protein 1669182 8916628 Nhal_1640 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527159.1 1668382 D 472759 CDS YP_003527160.1 292491721 8916629 complement(1669179..1669841) 1 NC_013960.1 KEGG: noc:Noc_1412 hypothetical protein; hypothetical protein 1669841 8916629 Nhal_1641 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527160.1 1669179 R 472759 CDS YP_003527161.1 292491722 8916630 1669929..1671068 1 NC_013960.1 PFAM: ATP dependent DNA ligase; KEGG: noc:Noc_1413 ATP-dependent DNA ligase; ATP dependent DNA ligase 1671068 8916630 Nhal_1642 Nitrosococcus halophilus Nc4 ATP dependent DNA ligase YP_003527161.1 1669929 D 472759 CDS YP_003527162.1 292491723 8916631 complement(1671090..1671689) 1 NC_013960.1 PFAM: protein of unknown function UPF0278; KEGG: noc:Noc_1414 hypothetical protein; hypothetical protein 1671689 8916631 Nhal_1643 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527162.1 1671090 R 472759 CDS YP_003527163.1 292491724 8916634 1673439..1673549 1 NC_013960.1 hypothetical protein 1673549 8916634 Nhal_1646 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527163.1 1673439 D 472759 CDS YP_003527164.1 292491725 8916635 1673576..1674142 1 NC_013960.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: noc:Noc_2438 sigma 54 modulation protein/ribosomal protein S30EA; Cold-shock protein DNA-binding protein 1674142 8916635 Nhal_1647 Nitrosococcus halophilus Nc4 Cold-shock protein DNA-binding protein YP_003527164.1 1673576 D 472759 CDS YP_003527165.1 292491726 8916636 1674150..1675226 1 NC_013960.1 TIGRFAM: magnesium and cobalt transporter CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: noc:Noc_1416 magnesium/cobalt transporter CorA; magnesium and cobalt transporter CorA 1675226 8916636 Nhal_1648 Nitrosococcus halophilus Nc4 magnesium and cobalt transporter CorA YP_003527165.1 1674150 D 472759 CDS YP_003527166.1 292491727 8916637 1675252..1675887 1 NC_013960.1 PFAM: protein of unknown function DUF599; KEGG: noc:Noc_1417 hypothetical protein; hypothetical protein 1675887 8916637 Nhal_1649 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527166.1 1675252 D 472759 CDS YP_003527167.1 292491728 8916638 complement(1675782..1679051) 1 NC_013960.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: noc:Noc_1418 heavy metal efflux pump; CzcA family heavy metal efflux pump 1679051 8916638 Nhal_1650 Nitrosococcus halophilus Nc4 CzcA family heavy metal efflux pump YP_003527167.1 1675782 R 472759 CDS YP_003527168.1 292491729 8916639 complement(1679081..1680364) 1 NC_013960.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: noc:Noc_1419 secretion protein HlyD; RND family efflux transporter MFP subunit 1680364 8916639 Nhal_1651 Nitrosococcus halophilus Nc4 RND family efflux transporter MFP subunit YP_003527168.1 1679081 R 472759 CDS YP_003527169.1 292491730 8916640 complement(1680367..1681764) 1 NC_013960.1 PFAM: outer membrane efflux protein; KEGG: noc:Noc_1420 outer membrane efflux protein; outer membrane efflux protein 1681764 8916640 Nhal_1652 Nitrosococcus halophilus Nc4 outer membrane efflux protein YP_003527169.1 1680367 R 472759 CDS YP_003527170.1 292491731 8916641 complement(1681888..1682388) 1 NC_013960.1 KEGG: noc:Noc_1421 hypothetical protein; hypothetical protein 1682388 8916641 Nhal_1653 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527170.1 1681888 R 472759 CDS YP_003527171.1 292491732 8916642 complement(1682411..1684678) 1 NC_013960.1 KEGG: spl:Spea_2700 outer membrane protein precursor MtrB; hypothetical protein 1684678 8916642 Nhal_1654 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527171.1 1682411 R 472759 CDS YP_003527172.1 292491733 8916643 complement(1684732..1685670) 1 NC_013960.1 TIGRFAM: cytochrome C family protein; KEGG: dar:Daro_1402 double CXXCH motif-containing protein; cytochrome C family protein 1685670 8916643 Nhal_1655 Nitrosococcus halophilus Nc4 cytochrome C family protein YP_003527172.1 1684732 R 472759 CDS YP_003527173.1 292491734 8916644 complement(1686420..1687133) 1 NC_013960.1 PFAM: peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: noc:Noc_1406 cation transport ATPase; peptidoglycan-binding LysM 1687133 8916644 Nhal_1656 Nitrosococcus halophilus Nc4 peptidoglycan-binding LysM YP_003527173.1 1686420 R 472759 CDS YP_003527174.1 292491735 8916645 complement(1687142..1688461) 1 NC_013960.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding 8 domain protein; ferric reductase domain protein transmembrane component domain; KEGG: ank:AnaeK_0310 oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain-containing protein 1688461 8916645 Nhal_1657 Nitrosococcus halophilus Nc4 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_003527174.1 1687142 R 472759 CDS YP_003527175.1 292491736 8916646 complement(1688700..1689194) 1 NC_013960.1 KEGG: noc:Noc_2933 hypothetical protein; hypothetical protein 1689194 8916646 Nhal_1658 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527175.1 1688700 R 472759 CDS YP_003527176.1 292491737 8916647 complement(1689272..1689937) 1 NC_013960.1 KEGG: neu:NE1539 hypothetical protein; hypothetical protein 1689937 8916647 Nhal_1659 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527176.1 1689272 R 472759 CDS YP_003527177.1 292491738 8916648 1690683..1691123 1 NC_013960.1 PFAM: transcription regulator MerR DNA binding; MerR family transcriptional regulator; SMART: MerR family transcriptional regulator; KEGG: pat:Patl_2090 MerR family transcriptional regulator; transcription regulator MerR DNA binding protein 1691123 8916648 Nhal_1660 Nitrosococcus halophilus Nc4 transcription regulator MerR DNA binding protein YP_003527177.1 1690683 D 472759 CDS YP_003527178.1 292491739 8916649 1691369..1691665 1 NC_013960.1 KEGG: pnu:Pnuc_1672 heavy metal transport/detoxification protein; hypothetical protein 1691665 8916649 Nhal_1661 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527178.1 1691369 D 472759 CDS YP_003527179.1 292491740 8916650 1691697..1692602 1 NC_013960.1 KEGG: lpp:lpp1217 hypothetical protein; hypothetical protein 1692602 8916650 Nhal_1662 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527179.1 1691697 D 472759 CDS YP_003527180.1 292491741 8916651 1692622..1693596 1 NC_013960.1 PFAM: NHL repeat containing protein; KEGG: hypothetical protein; NHL repeat containing protein 1693596 8916651 Nhal_1663 Nitrosococcus halophilus Nc4 NHL repeat containing protein YP_003527180.1 1692622 D 472759 CDS YP_003527181.1 292491742 8916653 1696269..1696730 1 NC_013960.1 KEGG: noc:Noc_2435 hypothetical protein; hypothetical protein 1696730 8916653 Nhal_1665 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527181.1 1696269 D 472759 CDS YP_003527182.1 292491743 8916655 1697839..1698342 1 NC_013960.1 KEGG: tgr:Tgr7_1317 protein of unknown function DUF1568; hypothetical protein 1698342 8916655 Nhal_1667 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527182.1 1697839 D 472759 CDS YP_003527183.1 292491744 8916656 1698346..1698456 1 NC_013960.1 hypothetical protein 1698456 8916656 Nhal_1668 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527183.1 1698346 D 472759 CDS YP_003527184.1 292491745 8916657 complement(1698437..1698562) 1 NC_013960.1 hypothetical protein 1698562 8916657 Nhal_1669 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527184.1 1698437 R 472759 CDS YP_003527185.1 292491746 8916658 complement(1698546..1698719) 1 NC_013960.1 hypothetical protein 1698719 8916658 Nhal_1670 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527185.1 1698546 R 472759 CDS YP_003527186.1 292491747 8916659 complement(1698712..1699572) 1 NC_013960.1 PFAM: fatty acid hydroxylase; KEGG: noc:Noc_1326 sterol desaturase-related protein; fatty acid hydroxylase 1699572 8916659 Nhal_1671 Nitrosococcus halophilus Nc4 fatty acid hydroxylase YP_003527186.1 1698712 R 472759 CDS YP_003527187.1 292491748 8916660 complement(1699559..1702873) 1 NC_013960.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: noc:Noc_1535 heavy metal efflux pump; CzcA family heavy metal efflux pump 1702873 8916660 Nhal_1672 Nitrosococcus halophilus Nc4 CzcA family heavy metal efflux pump YP_003527187.1 1699559 R 472759 CDS YP_003527188.1 292491749 8916661 complement(1702867..1704393) 1 NC_013960.1 TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: noc:Noc_1536 secretion protein HlyD; RND family efflux transporter MFP subunit 1704393 8916661 Nhal_1673 Nitrosococcus halophilus Nc4 RND family efflux transporter MFP subunit YP_003527188.1 1702867 R 472759 CDS YP_003527189.1 292491750 8916662 complement(1704390..1705724) 1 NC_013960.1 PFAM: outer membrane efflux protein; KEGG: noc:Noc_1537 outer membrane efflux protein; outer membrane efflux protein 1705724 8916662 Nhal_1674 Nitrosococcus halophilus Nc4 outer membrane efflux protein YP_003527189.1 1704390 R 472759 CDS YP_003527190.1 292491751 8916663 complement(1705814..1706254) 1 NC_013960.1 KEGG: noc:Noc_1538 hypothetical protein; hypothetical protein 1706254 8916663 Nhal_1675 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527190.1 1705814 R 472759 CDS YP_003527191.1 292491752 8916664 complement(1706607..1708100) 1 NC_013960.1 TIGRFAM: mercuric reductase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: shn:Shewana3_4345 mercuric reductase; mercuric reductase 1708100 8916664 Nhal_1676 Nitrosococcus halophilus Nc4 mercuric reductase YP_003527191.1 1706607 R 472759 CDS YP_003527192.1 292491753 8916665 complement(1708097..1708348) 1 NC_013960.1 KEGG: maq:Maqu_0241 hypothetical protein; hypothetical protein 1708348 8916665 Nhal_1677 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527192.1 1708097 R 472759 CDS YP_003527193.1 292491754 8916666 complement(1708341..1708640) 1 NC_013960.1 TIGRFAM: mercuric transporter periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: amc:MADE_01410 periplasmic mercuric ion binding protein MerP; mercuric transporter periplasmic component 1708640 8916666 Nhal_1678 Nitrosococcus halophilus Nc4 mercuric transporter periplasmic component YP_003527193.1 1708341 R 472759 CDS YP_003527194.1 292491755 8916667 complement(1708653..1709057) 1 NC_013960.1 PFAM: Mercuric transporter MerT; KEGG: oan:Oant_3157 mercuric transporter MerT; Mercuric transporter MerT 1709057 8916667 Nhal_1679 Nitrosococcus halophilus Nc4 Mercuric transporter MerT YP_003527194.1 1708653 R 472759 CDS YP_003527195.1 292491756 8916668 1709135..1709623 1 NC_013960.1 PFAM: transcription regulator MerR DNA binding; MerR family transcriptional regulator; SMART: MerR family transcriptional regulator; KEGG: oca:OCAR_7754 mercuric resistance operon regulatory protein; transcription regulator MerR DNA binding protein 1709623 8916668 Nhal_1680 Nitrosococcus halophilus Nc4 transcription regulator MerR DNA binding protein YP_003527195.1 1709135 D 472759 CDS YP_003527196.1 292491757 8916669 complement(1709774..1710097) 1 NC_013960.1 PFAM: protein of unknown function UPF0060; KEGG: nha:Nham_2004 hypothetical protein; hypothetical protein 1710097 8916669 Nhal_1681 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527196.1 1709774 R 472759 CDS YP_003527197.1 292491758 8916670 1710210..1710659 1 NC_013960.1 KEGG: noc:Noc_1338 hypothetical protein; hypothetical protein 1710659 8916670 Nhal_1682 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527197.1 1710210 D 472759 CDS YP_003527198.1 292491759 8916671 1710722..1712014 1 NC_013960.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: noc:Noc_1339 secretion protein HlyD; RND family efflux transporter MFP subunit 1712014 8916671 Nhal_1683 Nitrosococcus halophilus Nc4 RND family efflux transporter MFP subunit YP_003527198.1 1710722 D 472759 CDS YP_003527199.1 292491760 8916672 1712031..1715174 1 NC_013960.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: noc:Noc_1340 heavy metal efflux pump; CzcA family heavy metal efflux pump 1715174 8916672 Nhal_1684 Nitrosococcus halophilus Nc4 CzcA family heavy metal efflux pump YP_003527199.1 1712031 D 472759 CDS YP_003527200.1 292491761 8916673 1715405..1716154 1 NC_013960.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: noc:Noc_1534 cation efflux protein; cation diffusion facilitator family transporter 1716154 8916673 Nhal_1685 Nitrosococcus halophilus Nc4 cation diffusion facilitator family transporter YP_003527200.1 1715405 D 472759 CDS YP_003527201.1 292491762 8916674 1716613..1716996 1 NC_013960.1 KEGG: noc:Noc_1527 hypothetical protein; hypothetical protein 1716996 8916674 Nhal_1686 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527201.1 1716613 D 472759 CDS YP_003527202.1 292491763 8916675 1717250..1718716 1 NC_013960.1 PFAM: outer membrane efflux protein; KEGG: noc:Noc_1528 outer membrane efflux protein; outer membrane efflux protein 1718716 8916675 Nhal_1687 Nitrosococcus halophilus Nc4 outer membrane efflux protein YP_003527202.1 1717250 D 472759 CDS YP_003527203.1 292491764 8916676 1718713..1720098 1 NC_013960.1 TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: noc:Noc_1529 secretion protein HlyD; RND family efflux transporter MFP subunit 1720098 8916676 Nhal_1688 Nitrosococcus halophilus Nc4 RND family efflux transporter MFP subunit YP_003527203.1 1718713 D 472759 CDS YP_003527204.1 292491765 8916677 1720107..1723418 1 NC_013960.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: noc:Noc_1530 heavy metal efflux pump; CzcA family heavy metal efflux pump 1723418 8916677 Nhal_1689 Nitrosococcus halophilus Nc4 CzcA family heavy metal efflux pump YP_003527204.1 1720107 D 472759 CDS YP_003527205.1 292491766 8916678 complement(1723405..1723917) 1 NC_013960.1 KEGG: noc:Noc_0487 hypothetical protein; hypothetical protein 1723917 8916678 Nhal_1690 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527205.1 1723405 R 472759 CDS YP_003527206.1 292491767 8916679 1724468..1724758 1 NC_013960.1 KEGG: scl:sce8100 multicopper oxidase; multicopper oxidase 1724758 8916679 Nhal_1691 Nitrosococcus halophilus Nc4 multicopper oxidase YP_003527206.1 1724468 D 472759 CDS YP_003527207.1 292491768 8916680 1724971..1725474 1 NC_013960.1 hypothetical protein 1725474 8916680 Nhal_1692 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527207.1 1724971 D 472759 CDS YP_003527208.1 292491769 8916681 1725582..1726970 1 NC_013960.1 KEGG: noc:Noc_2899 hypothetical protein; hypothetical protein 1726970 8916681 Nhal_1693 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527208.1 1725582 D 472759 CDS YP_003527209.1 292491770 8916682 complement(1727018..1727179) 1 NC_013960.1 hypothetical protein 1727179 8916682 Nhal_1694 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527209.1 1727018 R 472759 CDS YP_003527210.1 292491771 8916683 1727203..1727529 1 NC_013960.1 KEGG: tcx:Tcr_2100 hypothetical protein; hypothetical protein 1727529 8916683 Nhal_1695 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527210.1 1727203 D 472759 CDS YP_003527211.1 292491772 8916684 1727623..1730409 1 NC_013960.1 KEGG: afr:AFE_2439 copper-translocating P-type ATPase; TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; ATPase P 1730409 8916684 Nhal_1696 Nitrosococcus halophilus Nc4 ATPase P YP_003527211.1 1727623 D 472759 CDS YP_003527212.1 292491773 8916685 1730445..1731662 1 NC_013960.1 PFAM: glycosyl transferase group 1; KEGG: geo:Geob_2843 glycosyl transferase group 1; group 1 glycosyl transferase 1731662 8916685 Nhal_1697 Nitrosococcus halophilus Nc4 group 1 glycosyl transferase YP_003527212.1 1730445 D 472759 CDS YP_003527213.1 292491774 8916686 1731736..1732122 1 NC_013960.1 KEGG: noc:Noc_1539 hypothetical protein; hypothetical protein 1732122 8916686 Nhal_1698 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527213.1 1731736 D 472759 CDS YP_003527214.1 292491775 8916687 1732189..1732932 1 NC_013960.1 PFAM: YHS domain protein; SMART: TRASH domain protein; KEGG: dal:Dalk_4361 Rossmann fold nucleotide-binding protein; YHS domain-containing protein 1732932 8916687 Nhal_1699 Nitrosococcus halophilus Nc4 YHS domain-containing protein YP_003527214.1 1732189 D 472759 CDS YP_003527215.1 292491776 8916688 1733005..1733211 1 NC_013960.1 KEGG: tgr:Tgr7_0876 hypothetical protein; hypothetical protein 1733211 8916688 Nhal_1700 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527215.1 1733005 D 472759 CDS YP_003527216.1 292491777 8916690 1733529..1733768 1 NC_013960.1 KEGG: dol:Dole_0430 hypothetical protein; hypothetical protein 1733768 8916690 Nhal_1702 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527216.1 1733529 D 472759 CDS YP_003527217.1 292491778 8916691 1734083..1735066 1 NC_013960.1 PFAM: radical SAM protein; KEGG: scl:sce0132 pyruvate formate lyase activating enzyme; radical SAM protein 1735066 8916691 Nhal_1703 Nitrosococcus halophilus Nc4 radical SAM protein YP_003527217.1 1734083 D 472759 CDS YP_003527218.1 292491779 8916692 complement(1735103..1736263) 1 NC_013960.1 KEGG: dar:Daro_2995 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; hypothetical protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS sensor protein 1736263 8916692 Nhal_1704 Nitrosococcus halophilus Nc4 PAS sensor protein YP_003527218.1 1735103 R 472759 CDS YP_003527219.1 292491780 8916693 complement(1736532..1736672) 1 NC_013960.1 hypothetical protein 1736672 8916693 Nhal_1705 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527219.1 1736532 R 472759 CDS YP_003527220.1 292491781 8916694 complement(1736647..1737930) 1 NC_013960.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: afr:AFE_1023 HNH endonuclease domain protein; HNH endonuclease 1737930 8916694 Nhal_1706 Nitrosococcus halophilus Nc4 HNH endonuclease YP_003527220.1 1736647 R 472759 CDS YP_003527221.1 292491782 8916695 complement(1738316..1738822) 1 NC_013960.1 KEGG: noc:Noc_1422 hypothetical protein; hypothetical protein 1738822 8916695 Nhal_1707 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527221.1 1738316 R 472759 CDS YP_003527222.1 292491783 8916696 complement(1738857..1741367) 1 NC_013960.1 TIGRFAM: ATPase P; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; haloacid dehalogenase; KEGG: dat:HRM2_00430 SilP; ATPase P 1741367 8916696 Nhal_1708 Nitrosococcus halophilus Nc4 ATPase P YP_003527222.1 1738857 R 472759 CDS YP_003527223.1 292491784 8916697 complement(1741452..1742519) 1 NC_013960.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: wsu:WS2173 hypothetical protein; CaCA family Na+/Ca+ antiporter 1742519 8916697 Nhal_1709 Nitrosococcus halophilus Nc4 CaCA family Na+/Ca+ antiporter YP_003527223.1 1741452 R 472759 CDS YP_003527224.1 292491785 8916699 complement(1743000..1743590) 1 NC_013960.1 KEGG: noc:Noc_1424 hypothetical protein; hypothetical protein 1743590 8916699 Nhal_1711 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527224.1 1743000 R 472759 CDS YP_003527225.1 292491786 8916700 1743727..1745421 1 NC_013960.1 KEGG: eba:ebA6232 hypothetical protein; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; alpha-glucan phosphorylase 1745421 8916700 Nhal_1712 Nitrosococcus halophilus Nc4 alpha-glucan phosphorylase YP_003527225.1 1743727 D 472759 CDS YP_003527226.1 292491787 8916701 complement(1745450..1745875) 1 NC_013960.1 KEGG: gme:Gmet_0037 hypothetical protein; hypothetical protein 1745875 8916701 Nhal_1713 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527226.1 1745450 R 472759 CDS YP_003527227.1 292491788 8916702 1745988..1746560 1 NC_013960.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: lpp:lpp2547 hypothetical protein; alkylhydroperoxidase like protein 1746560 8916702 Nhal_1714 Nitrosococcus halophilus Nc4 alkylhydroperoxidase like protein YP_003527227.1 1745988 D 472759 CDS YP_003527228.1 292491789 8916705 complement(1748168..1748308) 1 NC_013960.1 hypothetical protein 1748308 8916705 Nhal_1717 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527228.1 1748168 R 472759 CDS YP_003527229.1 292491790 8916706 1748448..1749581 1 NC_013960.1 PFAM: protein of unknown function UPF0118; KEGG: noc:Noc_1428 hypothetical protein; hypothetical protein 1749581 8916706 Nhal_1718 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527229.1 1748448 D 472759 CDS YP_003527230.1 292491791 8916707 1749618..1751585 1 NC_013960.1 PFAM: CHASE2 domain protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: hha:Hhal_0302 CHASE2 sensor protein; CHASE2 domain-containing protein 1751585 8916707 Nhal_1719 Nitrosococcus halophilus Nc4 CHASE2 domain-containing protein YP_003527230.1 1749618 D 472759 CDS YP_003527231.1 292491792 8916708 1751601..1752392 1 NC_013960.1 PFAM: protein of unknown function DUF928; hypothetical protein 1752392 8916708 Nhal_1720 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527231.1 1751601 D 472759 CDS YP_003527232.1 292491793 8916709 1753224..1753538 1 NC_013960.1 KEGG: bxe:Bxe_B2908 haemagglutinin; hemagglutinin 1753538 8916709 Nhal_1721 Nitrosococcus halophilus Nc4 hemagglutinin YP_003527232.1 1753224 D 472759 CDS YP_003527233.1 292491794 8916710 1753608..1753946 1 NC_013960.1 hypothetical protein 1753946 8916710 Nhal_1722 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527233.1 1753608 D 472759 CDS YP_003527234.1 292491795 8916711 1754201..1755805 1 NC_013960.1 KEGG: asu:Asuc_0397 peptidoglycan binding domain-containing protein; hypothetical protein 1755805 8916711 Nhal_1723 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527234.1 1754201 D 472759 CDS YP_003527235.1 292491796 8916712 1755819..1756118 1 NC_013960.1 KEGG: dol:Dole_2507 hypothetical protein; hypothetical protein 1756118 8916712 Nhal_1724 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527235.1 1755819 D 472759 CDS YP_003527236.1 292491797 8916713 1756225..1756833 1 NC_013960.1 PFAM: OmpA/MotB domain protein; KEGG: rpb:RPB_0900 OmpA/MotB; OmpA/MotB domain-containing protein 1756833 8916713 Nhal_1725 Nitrosococcus halophilus Nc4 OmpA/MotB domain-containing protein YP_003527236.1 1756225 D 472759 CDS YP_003527237.1 292491798 8916714 1756845..1757699 1 NC_013960.1 KEGG: har:HEAR3228 hypothetical protein; hypothetical protein 1757699 8916714 Nhal_1726 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527237.1 1756845 D 472759 CDS YP_003527238.1 292491799 8916715 1757734..1758102 1 NC_013960.1 hypothetical protein 1758102 8916715 Nhal_1727 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527238.1 1757734 D 472759 CDS YP_003527239.1 292491800 8916716 complement(1758355..1760826) 1 NC_013960.1 PFAM: peptidase C14 caspase catalytic subunit p20; Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: hch:HCH_04244 hypothetical protein; peptidase C14 caspase catalytic subunit p20 1760826 8916716 Nhal_1728 Nitrosococcus halophilus Nc4 peptidase C14 caspase catalytic subunit p20 YP_003527239.1 1758355 R 472759 CDS YP_003527240.1 292491801 8916717 complement(1761083..1761517) 1 NC_013960.1 KEGG: gsu:GSU2315 hypothetical protein; hypothetical protein 1761517 8916717 Nhal_1729 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527240.1 1761083 R 472759 CDS YP_003527241.1 292491802 8916718 1761715..1761918 1 NC_013960.1 KEGG: noc:Noc_1429 hypothetical protein; hypothetical protein 1761918 8916718 Nhal_1730 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527241.1 1761715 D 472759 CDS YP_003527242.1 292491803 8916719 1762134..1764452 1 NC_013960.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: noc:Noc_1430 TonB-dependent receptor; TonB-dependent receptor 1764452 8916719 Nhal_1731 Nitrosococcus halophilus Nc4 TonB-dependent receptor YP_003527242.1 1762134 D 472759 CDS YP_003527243.1 292491804 8916720 complement(1764550..1765203) 1 NC_013960.1 KEGG: rhi:NGR_b20500 hydrolase protein; hydrolase protein 1765203 8916720 Nhal_1732 Nitrosococcus halophilus Nc4 hydrolase protein YP_003527243.1 1764550 R 472759 CDS YP_003527244.1 292491805 8916721 1765326..1765694 1 NC_013960.1 KEGG: nmu:Nmul_A0035 hypothetical protein; hypothetical protein 1765694 8916721 Nhal_1733 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527244.1 1765326 D 472759 CDS YP_003527245.1 292491806 8916722 1766046..1766858 1 NC_013960.1 KEGG: reu:Reut_A2010 hypothetical protein; hypothetical protein 1766858 8916722 Nhal_1734 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527245.1 1766046 D 472759 CDS YP_003527246.1 292491807 8916723 1766971..1767705 1 NC_013960.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_1836 ABC transporter ATPase; ABC transporter 1767705 8916723 Nhal_1735 Nitrosococcus halophilus Nc4 ABC transporter YP_003527246.1 1766971 D 472759 CDS YP_003527247.1 292491808 8916724 1767696..1768499 1 NC_013960.1 PFAM: conserved hypothetical protein; KEGG: noc:Noc_1835 hypothetical protein; hypothetical protein 1768499 8916724 Nhal_1736 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527247.1 1767696 D 472759 CDS YP_003527248.1 292491809 8916725 1768670..1768918 1 NC_013960.1 PFAM: protein of unknown function DUF433; KEGG: afr:AFE_1367 hypothetical protein; hypothetical protein 1768918 8916725 Nhal_1737 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527248.1 1768670 D 472759 CDS YP_003527249.1 292491810 8916726 1768908..1769264 1 NC_013960.1 KEGG: rpt:Rpal_0895 hypothetical protein; hypothetical protein 1769264 8916726 Nhal_1738 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527249.1 1768908 D 472759 CDS YP_003527250.1 292491811 8916727 join(1769460..1769738,1769738..1770178) 1 NC_013960.1 hypothetical protein 1770178 8916727 Nhal_1739 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527250.1 1769460 D 472759 CDS YP_003527251.1 292491812 8916728 1770231..1770452 1 NC_013960.1 KEGG: gur:Gura_4195 hypothetical protein; hypothetical protein 1770452 8916728 Nhal_1740 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527251.1 1770231 D 472759 CDS YP_003527252.1 292491813 8916729 1770407..1770721 1 NC_013960.1 KEGG: afe:Lferr_0674 hypothetical protein; hypothetical protein 1770721 8916729 Nhal_1741 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527252.1 1770407 D 472759 CDS YP_003527253.1 292491814 8916730 1770878..1771282 1 NC_013960.1 PFAM: Penicillinase repressor; KEGG: noc:Noc_0290 penicillinase repressor; Penicillinase repressor 1771282 8916730 Nhal_1742 Nitrosococcus halophilus Nc4 Penicillinase repressor YP_003527253.1 1770878 D 472759 CDS YP_003527254.1 292491815 8916731 1771282..1772277 1 NC_013960.1 PFAM: peptidase M48 Ste24p; peptidase M56 BlaR1; KEGG: noc:Noc_0291 hypothetical protein; peptidase M48 Ste24p 1772277 8916731 Nhal_1743 Nitrosococcus halophilus Nc4 peptidase M48 Ste24p YP_003527254.1 1771282 D 472759 CDS YP_003527255.1 292491816 8916732 1772281..1773585 1 NC_013960.1 PFAM: outer membrane efflux protein; KEGG: noc:Noc_0292 outer membrane efflux protein; outer membrane efflux protein 1773585 8916732 Nhal_1744 Nitrosococcus halophilus Nc4 outer membrane efflux protein YP_003527255.1 1772281 D 472759 CDS YP_003527256.1 292491817 8916733 1773582..1775129 1 NC_013960.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: noc:Noc_0293 secretion protein HlyD; RND family efflux transporter MFP subunit 1775129 8916733 Nhal_1745 Nitrosococcus halophilus Nc4 RND family efflux transporter MFP subunit YP_003527256.1 1773582 D 472759 CDS YP_003527257.1 292491818 8916734 1775137..1778244 1 NC_013960.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: noc:Noc_0294 heavy metal efflux pump; CzcA family heavy metal efflux pump 1778244 8916734 Nhal_1746 Nitrosococcus halophilus Nc4 CzcA family heavy metal efflux pump YP_003527257.1 1775137 D 472759 CDS YP_003527258.1 292491819 8916735 1778228..1778410 1 NC_013960.1 KEGG: afr:AFE_0072 hypothetical protein; hypothetical protein 1778410 8916735 Nhal_1747 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527258.1 1778228 D 472759 CDS YP_003527259.1 292491820 8916736 1778411..1778683 1 NC_013960.1 KEGG: rpe:RPE_2423 hypothetical protein; hypothetical protein 1778683 8916736 Nhal_1748 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527259.1 1778411 D 472759 CDS YP_003527260.1 292491821 8916737 1779009..1779410 1 NC_013960.1 hypothetical protein 1779410 8916737 Nhal_1749 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527260.1 1779009 D 472759 CDS YP_003527261.1 292491822 8916739 1779767..1780276 1 NC_013960.1 KEGG: nmu:Nmul_A1179 hypothetical protein; hypothetical protein 1780276 8916739 Nhal_1751 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527261.1 1779767 D 472759 CDS YP_003527262.1 292491823 8916740 1780353..1781387 1 NC_013960.1 PFAM: O-methyltransferase family 2; KEGG: nmu:Nmul_A1178 O-methyltransferase family protein; O-methyltransferase family 2 1781387 8916740 Nhal_1752 Nitrosococcus halophilus Nc4 O-methyltransferase family 2 YP_003527262.1 1780353 D 472759 CDS YP_003527263.1 292491824 8916742 complement(1782176..1785346) 1 NC_013960.1 TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: smd:Smed_4361 hydrophobe/amphiphile efflux-1 (HAE1) family protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 1785346 8916742 Nhal_1754 Nitrosococcus halophilus Nc4 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_003527263.1 1782176 R 472759 CDS YP_003527264.1 292491825 8916743 complement(1785343..1786470) 1 NC_013960.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: bcs:BCAN_B0337 RND family efflux transporter MFP subunit; RND family efflux transporter MFP subunit 1786470 8916743 Nhal_1755 Nitrosococcus halophilus Nc4 RND family efflux transporter MFP subunit YP_003527264.1 1785343 R 472759 CDS YP_003527265.1 292491826 8916745 complement(1787021..1787755) 1 NC_013960.1 PFAM: IS1 transposase; KEGG: prw:PsycPRwf_1938 IS1 transposase; IS1 transposase 1787755 8916745 Nhal_1757 Nitrosococcus halophilus Nc4 IS1 transposase YP_003527265.1 1787021 R 472759 CDS YP_003527266.1 292491827 8916746 complement(1788112..1789674) 1 NC_013960.1 PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase; KEGG: maq:Maqu_3283 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 1789674 8916746 Nhal_1758 Nitrosococcus halophilus Nc4 phospholipase D/transphosphatidylase YP_003527266.1 1788112 R 472759 CDS YP_003527267.1 292491828 8916747 complement(1789744..1791300) 1 NC_013960.1 PFAM: FAD linked oxidase; KEGG: noc:Noc_2406 FAD linked oxidase-like; FAD linked oxidase 1791300 8916747 Nhal_1759 Nitrosococcus halophilus Nc4 FAD linked oxidase YP_003527267.1 1789744 R 472759 CDS YP_003527268.1 292491829 8916748 complement(1791313..1792026) 1 NC_013960.1 KEGG: noc:Noc_2407 hypothetical protein; hypothetical protein 1792026 8916748 Nhal_1760 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527268.1 1791313 R 472759 CDS YP_003527269.1 292491830 8916749 complement(1792016..1792480) 1 NC_013960.1 KEGG: noc:Noc_2408 cytochrome C, class I; hypothetical protein 1792480 8916749 Nhal_1761 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527269.1 1792016 R 472759 CDS YP_003527270.1 292491831 8916750 complement(1792517..1794352) 1 NC_013960.1 TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA; DSBA oxidoreductase; KEGG: nmu:Nmul_A1537 Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA 1794352 8916750 Nhal_1762 Nitrosococcus halophilus Nc4 Na+/H+ antiporter NhaA YP_003527270.1 1792517 R 472759 CDS YP_003527271.1 292491832 8916751 complement(1794469..1795401) 1 NC_013960.1 PFAM: aldehyde dehydrogenase; KEGG: pag:PLES_52851 aldehyde dehydrogenase; aldehyde dehydrogenase 1795401 8916751 Nhal_1763 Nitrosococcus halophilus Nc4 aldehyde dehydrogenase YP_003527271.1 1794469 R 472759 CDS YP_003527272.1 292491833 8916752 complement(1795552..1796292) 1 NC_013960.1 PFAM: intradiol ring-cleavage dioxygenase; KEGG: noc:Noc_2416 intradiol ring-cleavage dioxygenase; intradiol ring-cleavage dioxygenase 1796292 8916752 Nhal_1764 Nitrosococcus halophilus Nc4 intradiol ring-cleavage dioxygenase YP_003527272.1 1795552 R 472759 CDS YP_003527273.1 292491834 8916753 complement(1796370..1797284) 1 NC_013960.1 KEGG: nmu:Nmul_A1224 hypothetical protein; hypothetical protein 1797284 8916753 Nhal_1765 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527273.1 1796370 R 472759 CDS YP_003527274.1 292491835 8916754 complement(1797324..1797926) 1 NC_013960.1 TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; NADPH-dependent FMN reductase; KEGG: noc:Noc_2414 flavoprotein WrbA; flavoprotein WrbA 1797926 8916754 Nhal_1766 Nitrosococcus halophilus Nc4 flavoprotein WrbA YP_003527274.1 1797324 R 472759 CDS YP_003527275.1 292491836 8916755 complement(1797969..1798091) 1 NC_013960.1 hypothetical protein 1798091 8916755 Nhal_1767 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527275.1 1797969 R 472759 CDS YP_003527276.1 292491837 8916756 complement(1798103..1798927) 1 NC_013960.1 PFAM: extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: noc:Noc_2413 extradiol ring-cleavage dioxygenase III subunit B; extradiol ring-cleavage dioxygenase class III protein subunit B 1798927 8916756 Nhal_1768 Nitrosococcus halophilus Nc4 extradiol ring-cleavage dioxygenase class III protein subunit B YP_003527276.1 1798103 R 472759 CDS YP_003527277.1 292491838 8916757 complement(1799057..1799521) 1 NC_013960.1 PFAM: DoxX family protein; KEGG: noc:Noc_2411 DoxX-like; DoxX family protein 1799521 8916757 Nhal_1769 Nitrosococcus halophilus Nc4 DoxX family protein YP_003527277.1 1799057 R 472759 CDS YP_003527278.1 292491839 8916758 1799628..1800575 1 NC_013960.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: noc:Noc_2410 LysR family transcriptional regulator; LysR family transcriptional regulator 1800575 8916758 Nhal_1770 Nitrosococcus halophilus Nc4 LysR family transcriptional regulator YP_003527278.1 1799628 D 472759 CDS YP_003527279.1 292491840 8916759 complement(1800602..1801960) 1 NC_013960.1 PFAM: monooxygenase FAD-binding; KEGG: scl:sce4847 hypothetical protein; monooxygenase FAD-binding protein 1801960 8916759 Nhal_1771 Nitrosococcus halophilus Nc4 monooxygenase FAD-binding protein YP_003527279.1 1800602 R 472759 CDS YP_003527280.1 292491841 8916760 complement(1802081..1802707) 1 NC_013960.1 KEGG: noc:Noc_2933 hypothetical protein; hypothetical protein 1802707 8916760 Nhal_1772 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527280.1 1802081 R 472759 CDS YP_003527281.1 292491842 8916761 1802887..1803933 1 NC_013960.1 PFAM: Haemin-degrading family protein; KEGG: noc:Noc_2932 hemin transporter HmuS; hemin-degrading family protein 1803933 8916761 Nhal_1773 Nitrosococcus halophilus Nc4 hemin-degrading family protein YP_003527281.1 1802887 D 472759 CDS YP_003527282.1 292491843 8916762 1803938..1804585 1 NC_013960.1 PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: noc:Noc_2926 UbiE/COQ5 methyltransferase; type 11 methyltransferase 1804585 8916762 Nhal_1774 Nitrosococcus halophilus Nc4 type 11 methyltransferase YP_003527282.1 1803938 D 472759 CDS YP_003527283.1 292491844 8916763 complement(1804653..1805054) 1 NC_013960.1 PFAM: protein of unknown function DUF1523; KEGG: noc:Noc_2925 hypothetical protein; hypothetical protein 1805054 8916763 Nhal_1775 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527283.1 1804653 R 472759 CDS YP_003527284.1 292491845 8916764 1805402..1805785 1 NC_013960.1 PFAM: membrane-flanked domain; KEGG: noc:Noc_0162 hypothetical protein; hypothetical protein 1805785 8916764 Nhal_1776 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527284.1 1805402 D 472759 CDS YP_003527285.1 292491846 8916765 1805789..1806088 1 NC_013960.1 KEGG: noc:Noc_0163 hypothetical protein; hypothetical protein 1806088 8916765 Nhal_1777 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527285.1 1805789 D 472759 CDS YP_003527286.1 292491847 8916766 complement(1806029..1807708) 1 NC_013960.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; KEGG: afw:Anae109_2027 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase 1807708 8916766 Nhal_1778 Nitrosococcus halophilus Nc4 phosphoenolpyruvate-protein phosphotransferase YP_003527286.1 1806029 R 472759 CDS YP_003527287.1 292491848 8916767 complement(1807821..1808099) 1 NC_013960.1 KEGG: gsu:GSU0187 hypothetical protein; hypothetical protein 1808099 8916767 Nhal_1779 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527287.1 1807821 R 472759 CDS YP_003527288.1 292491849 8916768 1808523..1809863 1 NC_013960.1 KEGG: abo:ABO_1817 L-lysine 2,3-aminomutase; L-lysine 2,3-aminomutase 1809863 8916768 Nhal_1780 Nitrosococcus halophilus Nc4 L-lysine 2,3-aminomutase YP_003527288.1 1808523 D 472759 CDS YP_003527289.1 292491850 8916769 complement(1809886..1811625) 1 NC_013960.1 TIGRFAM: sulfate transporter; PFAM: sulfate transporter; sulfate transporter/antisigma-factor antagonist STAS; xanthine/uracil/vitamin C permease; KEGG: aeh:Mlg_1307 sulfate transporter; sulfate transporter 1811625 8916769 Nhal_1781 Nitrosococcus halophilus Nc4 sulfate transporter YP_003527289.1 1809886 R 472759 CDS YP_003527290.1 292491851 8916770 1811989..1813950 1 NC_013960.1 PFAM: iron permease FTR1; cytochrome C class I; KEGG: noc:Noc_0164 high-affinity Fe2+/Pb2+ permease; iron permease FTR1 1813950 8916770 Nhal_1782 Nitrosococcus halophilus Nc4 iron permease FTR1 YP_003527290.1 1811989 D 472759 CDS YP_003527291.1 292491852 8916771 1814181..1814408 1 NC_013960.1 KEGG: noc:Noc_1820 TonB-dependent receptor; TonB-dependent receptor 1814408 8916771 Nhal_1783 Nitrosococcus halophilus Nc4 TonB-dependent receptor YP_003527291.1 1814181 D 472759 CDS YP_003527292.1 292491853 8916772 1814405..1816066 1 NC_013960.1 KEGG: abo:ABO_2095 multidrug transporter membrane component/ATP-binding component; TIGRFAM: cyclic peptide transporter; PFAM: ABC transporter related; SMART: ATPase AAA; cyclic peptide transporter 1816066 8916772 Nhal_1784 Nitrosococcus halophilus Nc4 cyclic peptide transporter YP_003527292.1 1814405 D 472759 CDS YP_003527293.1 292491854 8916773 1816166..1816369 1 NC_013960.1 PFAM: MbtH domain protein; KEGG: abo:ABO_2094 MbtH-family protein; MbtH domain-containing protein 1816369 8916773 Nhal_1785 Nitrosococcus halophilus Nc4 MbtH domain-containing protein YP_003527293.1 1816166 D 472759 CDS YP_003527294.1 292491855 8916774 1816410..1827236 1 NC_013960.1 TIGRFAM: amino acid adenylation protein; non-ribosomal peptide synthase; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: abo:ABO_2093 peptide synthetase; amino acid adenylation protein 1827236 8916774 Nhal_1786 Nitrosococcus halophilus Nc4 amino acid adenylation protein YP_003527294.1 1816410 D 472759 CDS YP_003527295.1 292491856 8916775 1827233..1832614 1 NC_013960.1 TIGRFAM: amino acid adenylation protein; PFAM: AMP-dependent synthetase and ligase; thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: abo:ABO_2092 peptide synthetase; amino acid adenylation protein 1832614 8916775 Nhal_1787 Nitrosococcus halophilus Nc4 amino acid adenylation protein YP_003527295.1 1827233 D 472759 CDS YP_003527296.1 292491857 8916776 1832741..1833739 1 NC_013960.1 KEGG: abo:ABO_2090 siderophore biosynthesis protein; siderophore biosynthesis protein 1833739 8916776 Nhal_1788 Nitrosococcus halophilus Nc4 siderophore biosynthesis protein YP_003527296.1 1832741 D 472759 CDS YP_003527297.1 292491858 8916777 1833778..1835079 1 NC_013960.1 KEGG: abo:ABO_2089 L-ornithine N5-oxygenase; L-lysine 6-monooxygenase (NADPH) 1835079 8916777 Nhal_1789 Nitrosococcus halophilus Nc4 L-lysine 6-monooxygenase (NADPH) YP_003527297.1 1833778 D 472759 CDS YP_003527298.1 292491859 8916778 1835086..1835856 1 NC_013960.1 PFAM: ferric iron reductase; KEGG: abo:ABO_2088 ferric iron reductase protein; ferric iron reductase 1835856 8916778 Nhal_1790 Nitrosococcus halophilus Nc4 ferric iron reductase YP_003527298.1 1835086 D 472759 CDS YP_003527299.1 292491860 8916779 complement(1835862..1836566) 1 NC_013960.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: pfo:Pfl01_4243 4'-phosphopantetheinyl transferase; 4'-phosphopantetheinyl transferase 1836566 8916779 Nhal_1791 Nitrosococcus halophilus Nc4 4'-phosphopantetheinyl transferase YP_003527299.1 1835862 R 472759 CDS YP_003527300.1 292491861 8916780 1836719..1839097 1 NC_013960.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; Secretin/TonB short domain; KEGG: nwi:Nwi_2881 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 1839097 8916780 Nhal_1792 Nitrosococcus halophilus Nc4 TonB-dependent siderophore receptor YP_003527300.1 1836719 D 472759 CDS YP_003527301.1 292491862 8916781 1839113..1840363 1 NC_013960.1 PFAM: PepSY-associated TM helix domain protein; KEGG: nmu:Nmul_A1822 PepSY-associated TM helix; PepSY-associated TM helix domain-containing protein 1840363 8916781 Nhal_1793 Nitrosococcus halophilus Nc4 PepSY-associated TM helix domain-containing protein YP_003527301.1 1839113 D 472759 CDS YP_003527302.1 292491863 8916782 1840397..1840504 1 NC_013960.1 hypothetical protein 1840504 8916782 Nhal_1794 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527302.1 1840397 D 472759 CDS YP_003527303.1 292491864 8916783 1840611..1841546 1 NC_013960.1 TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: bcs:BCAN_A1707 TonB-system energizer ExbB; tonB-system energizer ExbB 1841546 8916783 Nhal_1795 Nitrosococcus halophilus Nc4 tonB-system energizer ExbB YP_003527303.1 1840611 D 472759 CDS YP_003527304.1 292491865 8916784 1841552..1841992 1 NC_013960.1 TIGRFAM: TonB system transporter ExbD; PFAM: biopolymertransporter ExbD/TolR; KEGG: pla:Plav_0374 TonB system transporter ExbD type-1; TonB system transporter ExbD 1841992 8916784 Nhal_1796 Nitrosococcus halophilus Nc4 TonB system transporter ExbD YP_003527304.1 1841552 D 472759 CDS YP_003527305.1 292491866 8916785 1842010..1842792 1 NC_013960.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: rpc:RPC_0938 TonB-like; TonB family protein 1842792 8916785 Nhal_1797 Nitrosococcus halophilus Nc4 TonB family protein YP_003527305.1 1842010 D 472759 CDS YP_003527306.1 292491867 8916786 1842869..1844674 1 NC_013960.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: noc:Noc_0115 ABC transporter transmembrane region; ABC transporter 1844674 8916786 Nhal_1798 Nitrosococcus halophilus Nc4 ABC transporter YP_003527306.1 1842869 D 472759 CDS YP_003527307.1 292491868 8916787 complement(1844735..1846543) 1 NC_013960.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; KEGG: tbd:Tbd_0715 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 1846543 8916787 Nhal_1799 Nitrosococcus halophilus Nc4 TonB-dependent siderophore receptor YP_003527307.1 1844735 R 472759 CDS YP_003527308.1 292491869 8916788 complement(1846518..1847801) 1 NC_013960.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: afr:AFE_1023 HNH endonuclease domain protein; HNH endonuclease 1847801 8916788 Nhal_1800 Nitrosococcus halophilus Nc4 HNH endonuclease YP_003527308.1 1846518 R 472759 CDS YP_003527309.1 292491870 8916789 complement(1847794..1848552) 1 NC_013960.1 KEGG: psp:PSPPH_1484 TonB-dependent siderophore receptor; hypothetical protein 1848552 8916789 Nhal_1801 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527309.1 1847794 R 472759 CDS YP_003527310.1 292491871 8916790 complement(1848702..1850375) 1 NC_013960.1 KEGG: noc:Noc_0857 hypothetical protein; hypothetical protein 1850375 8916790 Nhal_1802 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527310.1 1848702 R 472759 CDS YP_003527311.1 292491872 8916791 complement(1850459..1850749) 1 NC_013960.1 KEGG: noc:Noc_0858 hypothetical protein; hypothetical protein 1850749 8916791 Nhal_1803 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527311.1 1850459 R 472759 CDS YP_003527312.1 292491873 8916792 complement(1850742..1850918) 1 NC_013960.1 hypothetical protein 1850918 8916792 Nhal_1804 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527312.1 1850742 R 472759 CDS YP_003527313.1 292491874 8916793 complement(1851013..1853010) 1 NC_013960.1 TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: noc:Noc_0859 TonB-dependent haemoglobin/transferrin/lactoferrin receptor; TonB-dependent heme/hemoglobin receptor family protein 1853010 8916793 Nhal_1805 Nitrosococcus halophilus Nc4 TonB-dependent heme/hemoglobin receptor family protein YP_003527313.1 1851013 R 472759 CDS YP_003527314.1 292491875 8916794 1853248..1853478 1 NC_013960.1 hypothetical protein 1853478 8916794 Nhal_1806 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527314.1 1853248 D 472759 CDS YP_003527315.1 292491876 8916795 complement(1853819..1856101) 1 NC_013960.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mca:MCA2074 TonB domain-containing protein; TonB-dependent receptor 1856101 8916795 Nhal_1807 Nitrosococcus halophilus Nc4 TonB-dependent receptor YP_003527315.1 1853819 R 472759 CDS YP_003527316.1 292491877 8916796 complement(1856574..1858637) 1 NC_013960.1 TIGRFAM: ATPase P; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: rpe:RPE_3876 ATPase P; ATPase P 1858637 8916796 Nhal_1808 Nitrosococcus halophilus Nc4 ATPase P YP_003527316.1 1856574 R 472759 CDS YP_003527317.1 292491878 8916797 complement(1858661..1859284) 1 NC_013960.1 KEGG: mxa:MXAN_6815 hypothetical protein; hypothetical protein 1859284 8916797 Nhal_1809 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527317.1 1858661 R 472759 CDS YP_003527318.1 292491879 8916798 complement(1859305..1860456) 1 NC_013960.1 PFAM: metallophosphoesterase; KEGG: afw:Anae109_2854 metallophosphoesterase; metallophosphoesterase 1860456 8916798 Nhal_1810 Nitrosococcus halophilus Nc4 metallophosphoesterase YP_003527318.1 1859305 R 472759 CDS YP_003527319.1 292491880 8916799 complement(1860456..1861775) 1 NC_013960.1 PFAM: Di-haem cytochrome C peroxidase; KEGG: mca:MCA0318 SCO1/SenC family protein/methylamine utilization protein MauG; cytochrome-c peroxidase 1861775 8916799 Nhal_1811 Nitrosococcus halophilus Nc4 cytochrome-c peroxidase YP_003527319.1 1860456 R 472759 CDS YP_003527320.1 292491881 8916800 complement(1861866..1862294) 1 NC_013960.1 PFAM: protein of unknown function DUF29; KEGG: noc:Noc_0766 hypothetical protein; hypothetical protein 1862294 8916800 Nhal_1812 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527320.1 1861866 R 472759 CDS YP_003527321.1 292491882 8916801 complement(1862353..1864044) 1 NC_013960.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1279 NADH/ubiquinone/plastoquinone (complex I); NADH/Ubiquinone/plastoquinone (complex I) 1864044 8916801 Nhal_1813 Nitrosococcus halophilus Nc4 NADH/Ubiquinone/plastoquinone (complex I) YP_003527321.1 1862353 R 472759 CDS YP_003527322.1 292491883 8916802 complement(1864041..1865546) 1 NC_013960.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1280 NADH dehydrogenase (quinone); NADH/Ubiquinone/plastoquinone (complex I) 1865546 8916802 Nhal_1814 Nitrosococcus halophilus Nc4 NADH/Ubiquinone/plastoquinone (complex I) YP_003527322.1 1864041 R 472759 CDS YP_003527323.1 292491884 8916803 complement(1865543..1867033) 1 NC_013960.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1281 NADH dehydrogenase (quinone); NADH/Ubiquinone/plastoquinone (complex I) 1867033 8916803 Nhal_1815 Nitrosococcus halophilus Nc4 NADH/Ubiquinone/plastoquinone (complex I) YP_003527323.1 1865543 R 472759 CDS YP_003527324.1 292491885 8916804 complement(1867199..1867516) 1 NC_013960.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: noc:Noc_1282 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase chain 4L 1867516 8916804 Nhal_1816 Nitrosococcus halophilus Nc4 NADH-ubiquinone oxidoreductase chain 4L YP_003527324.1 1867199 R 472759 CDS YP_003527325.1 292491886 8916805 complement(1867513..1868214) 1 NC_013960.1 KEGG: noc:Noc_1283 hypothetical protein; hypothetical protein 1868214 8916805 Nhal_1817 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527325.1 1867513 R 472759 CDS YP_003527326.1 292491887 8916806 complement(1868198..1868488) 1 NC_013960.1 KEGG: noc:Noc_1284 hypothetical protein; hypothetical protein 1868488 8916806 Nhal_1818 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527326.1 1868198 R 472759 CDS YP_003527327.1 292491888 8916807 complement(1868485..1868799) 1 NC_013960.1 TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: noc:Noc_1285 monovalent cation/H+ antiporter subunit G; monovalent cation/proton antiporter, MnhG/PhaG subunit 1868799 8916807 Nhal_1819 Nitrosococcus halophilus Nc4 monovalent cation/proton antiporter, MnhG/PhaG subunit YP_003527327.1 1868485 R 472759 CDS YP_003527328.1 292491889 8916808 complement(1868792..1869070) 1 NC_013960.1 PFAM: multiple resistance and pH regulation protein F; KEGG: noc:Noc_1286 multiple resistance and pH regulation protein F; multiple resistance and pH regulation protein F 1869070 8916808 Nhal_1820 Nitrosococcus halophilus Nc4 multiple resistance and pH regulation protein F YP_003527328.1 1868792 R 472759 CDS YP_003527329.1 292491890 8916809 complement(1869057..1869614) 1 NC_013960.1 PFAM: cation antiporter; KEGG: noc:Noc_1287 cation antiporter; cation antiporter 1869614 8916809 Nhal_1821 Nitrosococcus halophilus Nc4 cation antiporter YP_003527329.1 1869057 R 472759 CDS YP_003527330.1 292491891 8916810 complement(1869629..1869892) 1 NC_013960.1 hypothetical protein 1869892 8916810 Nhal_1822 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527330.1 1869629 R 472759 CDS YP_003527331.1 292491892 8916811 1870107..1871042 1 NC_013960.1 PFAM: UspA domain protein; KEGG: noc:Noc_1288 universal stress protein UspA; UspA domain-containing protein 1871042 8916811 Nhal_1823 Nitrosococcus halophilus Nc4 UspA domain-containing protein YP_003527331.1 1870107 D 472759 CDS YP_003527332.1 292491893 8916812 complement(1871505..1872788) 1 NC_013960.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: afr:AFE_1023 HNH endonuclease domain protein; HNH endonuclease 1872788 8916812 Nhal_1824 Nitrosococcus halophilus Nc4 HNH endonuclease YP_003527332.1 1871505 R 472759 CDS YP_003527333.1 292491894 8916813 complement(1873048..1874337) 1 NC_013960.1 KEGG: noc:Noc_1405 hypothetical protein; hypothetical protein 1874337 8916813 Nhal_1825 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527333.1 1873048 R 472759 CDS YP_003527334.1 292491895 8916814 1874488..1877751 1 NC_013960.1 KEGG: noc:Noc_1406 cation transport ATPase; TIGRFAM: ATPase P; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; haloacid dehalogenase; peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; ATPase P 1877751 8916814 Nhal_1826 Nitrosococcus halophilus Nc4 ATPase P YP_003527334.1 1874488 D 472759 CDS YP_003527335.1 292491896 8916815 1877865..1878524 1 NC_013960.1 KEGG: noc:Noc_1407 hypothetical protein; hypothetical protein 1878524 8916815 Nhal_1827 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527335.1 1877865 D 472759 CDS YP_003527336.1 292491897 8916816 1878685..1879800 1 NC_013960.1 PFAM: protein of unknown function UPF0118; KEGG: noc:Noc_1408 hypothetical protein; hypothetical protein 1879800 8916816 Nhal_1828 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527336.1 1878685 D 472759 CDS YP_003527337.1 292491898 8916817 1880122..1881807 1 NC_013960.1 PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: hha:Hhal_1863 sodium/hydrogen exchanger; sodium/hydrogen exchanger 1881807 8916817 Nhal_1829 Nitrosococcus halophilus Nc4 sodium/hydrogen exchanger YP_003527337.1 1880122 D 472759 CDS YP_003527338.1 292491899 8916818 1881861..1882727 1 NC_013960.1 PFAM: UspA domain protein; KEGG: hha:Hhal_0267 UspA domain-containing protein; UspA domain-containing protein 1882727 8916818 Nhal_1830 Nitrosococcus halophilus Nc4 UspA domain-containing protein YP_003527338.1 1881861 D 472759 CDS YP_003527339.1 292491900 8916819 complement(1882768..1883214) 1 NC_013960.1 PFAM: UspA domain protein; KEGG: noc:Noc_1409 universal stress protein UspA-like nucleotide-binding protein; UspA domain-containing protein 1883214 8916819 Nhal_1831 Nitrosococcus halophilus Nc4 UspA domain-containing protein YP_003527339.1 1882768 R 472759 CDS YP_003527340.1 292491901 8916820 complement(1883343..1884545) 1 NC_013960.1 PFAM: NnrS family protein; KEGG: noc:Noc_1410 NnrS-like protein; NnrS family protein 1884545 8916820 Nhal_1832 Nitrosococcus halophilus Nc4 NnrS family protein YP_003527340.1 1883343 R 472759 CDS YP_003527341.1 292491902 8916821 1884697..1885161 1 NC_013960.1 TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: noc:Noc_1411 bacterioferritin; bacterioferritin 1885161 8916821 Nhal_1833 Nitrosococcus halophilus Nc4 bacterioferritin YP_003527341.1 1884697 D 472759 CDS YP_003527342.1 292491903 8916822 complement(1885233..1886447) 1 NC_013960.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll2640 major facilitator superfamily transporter; major facilitator superfamily protein 1886447 8916822 Nhal_1834 Nitrosococcus halophilus Nc4 major facilitator superfamily protein YP_003527342.1 1885233 R 472759 CDS YP_003527343.1 292491904 8916823 1886640..1887698 1 NC_013960.1 PFAM: protein of unknown function UPF0118; KEGG: noc:Noc_1450 hypothetical protein; hypothetical protein 1887698 8916823 Nhal_1835 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527343.1 1886640 D 472759 CDS YP_003527344.1 292491905 8916824 join(1887863..1888351,1888351..1888932) 1 NC_013960.1 KEGG: mch:Mchl_5622 transposase and inactivated derivatives-like protein; hypothetical protein 1888932 8916824 Nhal_1836 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527344.1 1887863 D 472759 CDS YP_003527345.1 292491906 8916825 1889194..1889322 1 NC_013960.1 hypothetical protein 1889322 8916825 Nhal_1837 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527345.1 1889194 D 472759 CDS YP_003527346.1 292491907 8916826 1889564..1889818 1 NC_013960.1 PFAM: MbtH domain protein; KEGG: cja:CJA_1874 MbtH-like protein-related protein; MbtH domain-containing protein 1889818 8916826 Nhal_1838 Nitrosococcus halophilus Nc4 MbtH domain-containing protein YP_003527346.1 1889564 D 472759 CDS YP_003527347.1 292491908 8916828 1892393..1892587 1 NC_013960.1 hypothetical protein 1892587 8916828 Nhal_1840 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527347.1 1892393 D 472759 CDS YP_003527348.1 292491909 8916829 complement(1892580..1892696) 1 NC_013960.1 hypothetical protein 1892696 8916829 Nhal_1841 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527348.1 1892580 R 472759 CDS YP_003527349.1 292491910 8916832 complement(1894177..1895466) 1 NC_013960.1 KEGG: noc:Noc_1405 hypothetical protein; hypothetical protein 1895466 8916832 Nhal_1844 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527349.1 1894177 R 472759 CDS YP_003527350.1 292491911 8916833 1895617..1898880 1 NC_013960.1 KEGG: noc:Noc_1406 cation transport ATPase; TIGRFAM: ATPase P; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; haloacid dehalogenase; peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; ATPase P 1898880 8916833 Nhal_1845 Nitrosococcus halophilus Nc4 ATPase P YP_003527350.1 1895617 D 472759 CDS YP_003527351.1 292491912 8916834 1898994..1899653 1 NC_013960.1 KEGG: noc:Noc_1407 hypothetical protein; hypothetical protein 1899653 8916834 Nhal_1846 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527351.1 1898994 D 472759 CDS YP_003527352.1 292491913 8916835 1899814..1900929 1 NC_013960.1 PFAM: protein of unknown function UPF0118; KEGG: noc:Noc_1408 hypothetical protein; hypothetical protein 1900929 8916835 Nhal_1847 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527352.1 1899814 D 472759 CDS YP_003527353.1 292491914 8916836 1901251..1902936 1 NC_013960.1 PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: hha:Hhal_1863 sodium/hydrogen exchanger; sodium/hydrogen exchanger 1902936 8916836 Nhal_1848 Nitrosococcus halophilus Nc4 sodium/hydrogen exchanger YP_003527353.1 1901251 D 472759 CDS YP_003527354.1 292491915 8916837 1902990..1903856 1 NC_013960.1 PFAM: UspA domain protein; KEGG: hha:Hhal_0267 UspA domain-containing protein; UspA domain-containing protein 1903856 8916837 Nhal_1849 Nitrosococcus halophilus Nc4 UspA domain-containing protein YP_003527354.1 1902990 D 472759 CDS YP_003527355.1 292491916 8916838 complement(1903897..1904343) 1 NC_013960.1 PFAM: UspA domain protein; KEGG: noc:Noc_1409 universal stress protein UspA-like nucleotide-binding protein; UspA domain-containing protein 1904343 8916838 Nhal_1850 Nitrosococcus halophilus Nc4 UspA domain-containing protein YP_003527355.1 1903897 R 472759 CDS YP_003527356.1 292491917 8916839 complement(1904472..1905674) 1 NC_013960.1 PFAM: NnrS family protein; KEGG: noc:Noc_1410 NnrS-like protein; NnrS family protein 1905674 8916839 Nhal_1851 Nitrosococcus halophilus Nc4 NnrS family protein YP_003527356.1 1904472 R 472759 CDS YP_003527357.1 292491918 8916840 1905826..1906290 1 NC_013960.1 TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: noc:Noc_1411 bacterioferritin; bacterioferritin 1906290 8916840 Nhal_1852 Nitrosococcus halophilus Nc4 bacterioferritin YP_003527357.1 1905826 D 472759 CDS YP_003527358.1 292491919 8916841 complement(1906362..1907576) 1 NC_013960.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll2640 major facilitator superfamily transporter; major facilitator superfamily protein 1907576 8916841 Nhal_1853 Nitrosococcus halophilus Nc4 major facilitator superfamily protein YP_003527358.1 1906362 R 472759 CDS YP_003527359.1 292491920 8916842 1907769..1908827 1 NC_013960.1 PFAM: protein of unknown function UPF0118; KEGG: noc:Noc_1450 hypothetical protein; hypothetical protein 1908827 8916842 Nhal_1854 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527359.1 1907769 D 472759 CDS YP_003527360.1 292491921 8916843 join(1908992..1909480,1909480..1910061) 1 NC_013960.1 KEGG: mch:Mchl_5622 transposase and inactivated derivatives-like protein; hypothetical protein 1910061 8916843 Nhal_1855 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527360.1 1908992 D 472759 CDS YP_003527361.1 292491922 8916844 1910323..1910451 1 NC_013960.1 hypothetical protein 1910451 8916844 Nhal_1856 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527361.1 1910323 D 472759 CDS YP_003527362.1 292491923 8916845 1910693..1910947 1 NC_013960.1 PFAM: MbtH domain protein; KEGG: cja:CJA_1874 MbtH-like protein-related protein; MbtH domain-containing protein 1910947 8916845 Nhal_1857 Nitrosococcus halophilus Nc4 MbtH domain-containing protein YP_003527362.1 1910693 D 472759 CDS YP_003527363.1 292491924 8916847 1913522..1913716 1 NC_013960.1 hypothetical protein 1913716 8916847 Nhal_1859 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527363.1 1913522 D 472759 CDS YP_003527364.1 292491925 8916848 complement(1913709..1913825) 1 NC_013960.1 hypothetical protein 1913825 8916848 Nhal_1860 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527364.1 1913709 R 472759 CDS YP_003527365.1 292491926 8916851 1915389..1915622 1 NC_013960.1 KEGG: aav:Aave_1029 hypothetical protein; hypothetical protein 1915622 8916851 Nhal_1863 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527365.1 1915389 D 472759 CDS YP_003527366.1 292491927 8916852 1915612..1916031 1 NC_013960.1 KEGG: tgr:Tgr7_3220 PilT domain-containing protein; PilT domain-containing protein 1916031 8916852 Nhal_1864 Nitrosococcus halophilus Nc4 PilT domain-containing protein YP_003527366.1 1915612 D 472759 CDS YP_003527367.1 292491928 8916853 1916238..1916741 1 NC_013960.1 KEGG: noc:Noc_0328 BNR repeat-containing protein; BNR repeat-containing protein 1916741 8916853 Nhal_1865 Nitrosococcus halophilus Nc4 BNR repeat-containing protein YP_003527367.1 1916238 D 472759 CDS YP_003527368.1 292491929 8916854 1916903..1917118 1 NC_013960.1 hypothetical protein 1917118 8916854 Nhal_1866 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527368.1 1916903 D 472759 CDS YP_003527369.1 292491930 8916855 1917147..1918514 1 NC_013960.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: noc:Noc_0329 HlyD family secretion protein; RND family efflux transporter MFP subunit 1918514 8916855 Nhal_1867 Nitrosococcus halophilus Nc4 RND family efflux transporter MFP subunit YP_003527369.1 1917147 D 472759 CDS YP_003527370.1 292491931 8916856 complement(1918443..1918853) 1 NC_013960.1 KEGG: tgr:Tgr7_3221 hypothetical protein; hypothetical protein 1918853 8916856 Nhal_1868 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527370.1 1918443 R 472759 CDS YP_003527371.1 292491932 8916857 complement(1918854..1919078) 1 NC_013960.1 TIGRFAM: AbrB family transcriptional regulator; PFAM: SpoVT/AbrB domain protein; KEGG: pla:Plav_2596 AbrB family transcriptional regulator; AbrB family transcriptional regulator 1919078 8916857 Nhal_1869 Nitrosococcus halophilus Nc4 AbrB family transcriptional regulator YP_003527371.1 1918854 R 472759 CDS YP_003527372.1 292491933 8916858 1919313..1920650 1 NC_013960.1 KEGG: ppd:Ppro_1373 hypothetical protein; hypothetical protein 1920650 8916858 Nhal_1870 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527372.1 1919313 D 472759 CDS YP_003527373.1 292491934 8916859 1920653..1923397 1 NC_013960.1 KEGG: glo:Glov_1145 DNA mismatch repair protein MutS; TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS IV domain protein; MutS III domain protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; DNA mismatch repair protein MutS 1923397 8916859 Nhal_1871 Nitrosococcus halophilus Nc4 DNA mismatch repair protein MutS YP_003527373.1 1920653 D 472759 CDS YP_003527374.1 292491935 8916860 1923394..1924977 1 NC_013960.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; KEGG: glo:Glov_0993 DNA mismatch repair protein; DNA mismatch repair protein MutL 1924977 8916860 Nhal_1872 Nitrosococcus halophilus Nc4 DNA mismatch repair protein MutL YP_003527374.1 1923394 D 472759 CDS YP_003527375.1 292491936 8916861 complement(1925041..1925898) 1 NC_013960.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: noc:Noc_2077 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase NAD-binding protein 1925898 8916861 Nhal_1873 Nitrosococcus halophilus Nc4 6-phosphogluconate dehydrogenase NAD-binding protein YP_003527375.1 1925041 R 472759 CDS YP_003527376.1 292491937 8916862 complement(1925922..1926968) 1 NC_013960.1 PFAM: metallophosphoesterase; KEGG: sme:SMc00171 hypothetical protein; metallophosphoesterase 1926968 8916862 Nhal_1874 Nitrosococcus halophilus Nc4 metallophosphoesterase YP_003527376.1 1925922 R 472759 CDS YP_003527377.1 292491938 8916863 complement(1927087..1930038) 1 NC_013960.1 PFAM: peptidase M16C associated domain protein; peptidase M16 domain protein; KEGG: noc:Noc_2076 peptidase M16-like; peptidase M16C associated domain-containing protein 1930038 8916863 Nhal_1875 Nitrosococcus halophilus Nc4 peptidase M16C associated domain-containing protein YP_003527377.1 1927087 R 472759 CDS YP_003527378.1 292491939 8916864 complement(1930078..1930818) 1 NC_013960.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: noc:Noc_2075 HAD family hydrolase; HAD-superfamily hydrolase 1930818 8916864 Nhal_1876 Nitrosococcus halophilus Nc4 HAD-superfamily hydrolase YP_003527378.1 1930078 R 472759 CDS YP_003527379.1 292491940 8916865 complement(1930828..1931697) 1 NC_013960.1 PFAM: Hsp33 protein; KEGG: noc:Noc_2074 HSP33 protein; Hsp33 protein 1931697 8916865 Nhal_1877 Nitrosococcus halophilus Nc4 Hsp33 protein YP_003527379.1 1930828 R 472759 CDS YP_003527380.1 292491941 8916866 1931831..1931986 1 NC_013960.1 hypothetical protein 1931986 8916866 Nhal_1878 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527380.1 1931831 D 472759 CDS YP_003527381.1 292491942 8916867 complement(1932268..1932441) 1 NC_013960.1 hypothetical protein 1932441 8916867 Nhal_1879 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527381.1 1932268 R 472759 CDS YP_003527382.1 292491943 8916868 complement(1932589..1934325) 1 NC_013960.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 1.2; sigma-70 non-essential domain protein; sigma-70 region 4 domain protein; KEGG: noc:Noc_2066 hypothetical protein; sigma-70 family RNA polymerase sigma factor 1934325 8916868 Nhal_1880 Nitrosococcus halophilus Nc4 sigma-70 family RNA polymerase sigma factor YP_003527382.1 1932589 R 472759 CDS YP_003527383.1 292491944 8916871 1936416..1936838 1 NC_013960.1 PFAM: protein of unknown function DUF101; KEGG: avn:Avin_46270 hypothetical protein; hypothetical protein 1936838 8916871 Nhal_1883 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527383.1 1936416 D 472759 CDS YP_003527384.1 292491945 8916872 1936845..1938275 1 NC_013960.1 PFAM: protein of unknown function UPF0027; KEGG: tgr:Tgr7_1950 protein of unknown function UPF0027; hypothetical protein 1938275 8916872 Nhal_1884 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527384.1 1936845 D 472759 CDS YP_003527385.1 292491946 8916873 1938333..1938791 1 NC_013960.1 PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: mxa:MXAN_7380 CBS domain-containing protein; CBS domain-containing protein 1938791 8916873 Nhal_1885 Nitrosococcus halophilus Nc4 CBS domain-containing protein YP_003527385.1 1938333 D 472759 CDS YP_003527386.1 292491947 8916874 complement(1939009..1939203) 1 NC_013960.1 hypothetical protein 1939203 8916874 Nhal_1886 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527386.1 1939009 R 472759 CDS YP_003527387.1 292491948 8916875 complement(1939298..1939756) 1 NC_013960.1 KEGG: noc:Noc_2435 hypothetical protein; hypothetical protein 1939756 8916875 Nhal_1887 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527387.1 1939298 R 472759 CDS YP_003527388.1 292491949 8916876 1939976..1940704 1 NC_013960.1 PFAM: cyclase family protein; KEGG: rsq:Rsph17025_3859 hypothetical protein; cyclase family protein 1940704 8916876 Nhal_1888 Nitrosococcus halophilus Nc4 cyclase family protein YP_003527388.1 1939976 D 472759 CDS YP_003527389.1 292491950 8916877 complement(1940771..1941454) 1 NC_013960.1 PFAM: nitroreductase; KEGG: sfu:Sfum_0229 nitroreductase; nitroreductase 1941454 8916877 Nhal_1889 Nitrosococcus halophilus Nc4 nitroreductase YP_003527389.1 1940771 R 472759 CDS YP_003527390.1 292491951 8916878 complement(1941480..1942016) 1 NC_013960.1 KEGG: gur:Gura_2940 hypothetical protein; hypothetical protein 1942016 8916878 Nhal_1890 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527390.1 1941480 R 472759 CDS YP_003527391.1 292491952 8916879 complement(1942207..1946295) 1 NC_013960.1 KEGG: psa:PST_3560 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: MCP methyltransferase CheR-type; CheB methylesterase; response regulator receiver; hypothetical protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: MCP methyltransferase CheR-type; histidine kinase A domain protein; response regulator receiver; PAS domain containing protein; ATP-binding region ATPase domain protein; PAS sensor protein 1946295 8916879 Nhal_1891 Nitrosococcus halophilus Nc4 PAS sensor protein YP_003527391.1 1942207 R 472759 CDS YP_003527392.1 292491953 8916880 complement(1946831..1947550) 1 NC_013960.1 PFAM: LuxR family transcriptional regulator; Sigma-70 region 4 type 2; response regulator receiver; SMART: LuxR family transcriptional regulator; response regulator receiver; KEGG: noc:Noc_0276 two component transcription LuxR family regulatory protein; LuxR family transcriptional regulator 1947550 8916880 Nhal_1892 Nitrosococcus halophilus Nc4 LuxR family transcriptional regulator YP_003527392.1 1946831 R 472759 CDS YP_003527393.1 292491954 8916881 complement(1947601..1947936) 1 NC_013960.1 KEGG: noc:Noc_1602 hypothetical protein; hypothetical protein 1947936 8916881 Nhal_1893 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527393.1 1947601 R 472759 CDS YP_003527394.1 292491955 8916882 1948185..1948409 1 NC_013960.1 KEGG: GA28241 gene product from transcript GA28241-RA; hypothetical protein 1948409 8916882 Nhal_1894 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527394.1 1948185 D 472759 CDS YP_003527395.1 292491956 8916883 1948441..1949706 1 NC_013960.1 KEGG: sfu:Sfum_0366 adenosylhomocysteinase; TIGRFAM: adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; S-adenosyl-L-homocysteine hydrolase; adenosylhomocysteinase 1949706 8916883 Nhal_1895 Nitrosococcus halophilus Nc4 adenosylhomocysteinase YP_003527395.1 1948441 D 472759 CDS YP_003527396.1 292491957 8916884 1950224..1957843 1 NC_013960.1 TIGRFAM: hypothetical protein; PFAM: NHL repeat containing protein; hypothetical protein; KEGG: ank:AnaeK_1325 hypothetical protein; hypothetical protein 1957843 8916884 Nhal_1896 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527396.1 1950224 D 472759 CDS YP_003527397.1 292491958 8916886 1958907..1959338 1 NC_013960.1 PFAM: transposase IS200-family protein; KEGG: cps:CPS_1800 ISCps10, transposase; transposase IS200-family protein 1959338 8916886 Nhal_1898 Nitrosococcus halophilus Nc4 transposase IS200-family protein YP_003527397.1 1958907 D 472759 CDS YP_003527398.1 292491959 8916887 1959401..1959757 1 NC_013960.1 hypothetical protein 1959757 8916887 Nhal_1899 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527398.1 1959401 D 472759 CDS YP_003527399.1 292491960 8916888 1959812..1960303 1 NC_013960.1 KEGG: bvi:Bcep1808_7013 RNA-directed DNA polymerase (reverse transcriptase); Retron-type reverse transcriptase-like protein 1960303 8916888 Nhal_1900 Nitrosococcus halophilus Nc4 Retron-type reverse transcriptase-like protein YP_003527399.1 1959812 D 472759 CDS YP_003527400.1 292491961 8916889 1960341..1961564 1 NC_013960.1 PFAM: transposase mutator type; KEGG: son:SO_0708 transposase mutator family protein; transposase mutator type 1961564 8916889 Nhal_1901 Nitrosococcus halophilus Nc4 transposase mutator type YP_003527400.1 1960341 D 472759 CDS YP_003527401.1 292491962 8916890 complement(1961572..1962036) 1 NC_013960.1 hypothetical protein 1962036 8916890 Nhal_1902 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527401.1 1961572 R 472759 CDS YP_003527402.1 292491963 8916892 complement(1962635..1963519) 1 NC_013960.1 TIGRFAM: alternate F1F0 ATPase, F1 subunit gamma; PFAM: H+transporting two-sector ATPase subunit gamma; KEGG: pna:Pnap_2328 H+-transporting two-sector ATPase, subunit gamma; alternate F1F0 ATPase, F1 subunit gamma 1963519 8916892 Nhal_1904 Nitrosococcus halophilus Nc4 alternate F1F0 ATPase, F1 subunit gamma YP_003527402.1 1962635 R 472759 CDS YP_003527403.1 292491964 8916893 complement(1963525..1965036) 1 NC_013960.1 KEGG: pca:Pcar_2996 F0F1 ATP synthase subunit alpha; TIGRFAM: alternate F1F0 ATPase, F1 subunit alpha; ATP synthase F1 subunit alpha; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; alternate F1F0 ATPase, F1 subunit alpha 1965036 8916893 Nhal_1905 Nitrosococcus halophilus Nc4 alternate F1F0 ATPase, F1 subunit alpha YP_003527403.1 1963525 R 472759 CDS YP_003527404.1 292491965 8916894 complement(1965061..1965822) 1 NC_013960.1 TIGRFAM: alternate F1F0 ATPase, F0 subunit B; ATP synthase F0 subunit beta; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: rfr:Rfer_1167 H+-transporting two-sector ATPase, B/B' subunit; alternate F1F0 ATPase, F0 subunit B 1965822 8916894 Nhal_1906 Nitrosococcus halophilus Nc4 alternate F1F0 ATPase, F0 subunit B YP_003527404.1 1965061 R 472759 CDS YP_003527405.1 292491966 8916895 complement(1965826..1966104) 1 NC_013960.1 TIGRFAM: alternate F1F0 ATPase, F0 subunit C; ATP synthase F0 C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: mmw:Mmwyl1_1959 F0F1 ATP synthase subunit C; alternate F1F0 ATPase, F0 subunit C 1966104 8916895 Nhal_1907 Nitrosococcus halophilus Nc4 alternate F1F0 ATPase, F0 subunit C YP_003527405.1 1965826 R 472759 CDS YP_003527406.1 292491967 8916896 complement(1966104..1966835) 1 NC_013960.1 TIGRFAM: alternate F1F0 ATPase, F0 subunit A; ATP synthase F0 subunit alpha; PFAM: H+transporting two-sector ATPase subunit alpha; KEGG: sat:SYN_02101 F0F1 ATP synthase subunit A; alternate F1F0 ATPase, F0 subunit A 1966835 8916896 Nhal_1908 Nitrosococcus halophilus Nc4 alternate F1F0 ATPase, F0 subunit A YP_003527406.1 1966104 R 472759 CDS YP_003527407.1 292491968 8916897 complement(1966832..1967989) 1 NC_013960.1 KEGG: gme:Gmet_1014 peptidase S1C, Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; HtrA2 peptidase 1967989 8916897 Nhal_1909 Nitrosococcus halophilus Nc4 HtrA2 peptidase YP_003527407.1 1966832 R 472759 CDS YP_003527408.1 292491969 8916901 1973835..1975676 1 NC_013960.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: hch:HCH_00591 ABC-type multidrug transporter, ATPase and permeases; multidrug ABC transporter ATPase/permease 1975676 8916901 Nhal_1910 Nitrosococcus halophilus Nc4 multidrug ABC transporter ATPase/permease YP_003527408.1 1973835 D 472759 CDS YP_003527409.1 292491970 8916902 1975772..1977190 1 NC_013960.1 PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase; KEGG: noc:Noc_1682 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 1977190 8916902 Nhal_1911 Nitrosococcus halophilus Nc4 phospholipase D/transphosphatidylase YP_003527409.1 1975772 D 472759 CDS YP_003527410.1 292491971 8916903 1977251..1978642 1 NC_013960.1 PFAM: aldehyde dehydrogenase; KEGG: dat:HRM2_11640 NAD-dependent aldehyde dehydrogenase; aldehyde dehydrogenase 1978642 8916903 Nhal_1912 Nitrosococcus halophilus Nc4 aldehyde dehydrogenase YP_003527410.1 1977251 D 472759 CDS YP_003527411.1 292491972 8916904 1978659..1980476 1 NC_013960.1 PFAM: protein of unknown function DUF885; KEGG: mxa:MXAN_2860 hypothetical protein; hypothetical protein 1980476 8916904 Nhal_1913 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527411.1 1978659 D 472759 CDS YP_003527412.1 292491973 8916905 1980553..1980804 1 NC_013960.1 KEGG: hdu:HD0911 HicA protein; HicA protein 1980804 8916905 Nhal_1914 Nitrosococcus halophilus Nc4 HicA protein YP_003527412.1 1980553 D 472759 CDS YP_003527413.1 292491974 8916906 1980801..1981265 1 NC_013960.1 PFAM: HicB family protein; KEGG: csa:Csal_1678 HicB; HicB family protein 1981265 8916906 Nhal_1915 Nitrosococcus halophilus Nc4 HicB family protein YP_003527413.1 1980801 D 472759 CDS YP_003527414.1 292491975 8916907 1981226..1981681 1 NC_013960.1 hypothetical protein 1981681 8916907 Nhal_1916 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527414.1 1981226 D 472759 CDS YP_003527415.1 292491976 8916908 complement(1981705..1981944) 1 NC_013960.1 hypothetical protein 1981944 8916908 Nhal_1917 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527415.1 1981705 R 472759 CDS YP_003527416.1 292491977 8916911 1983314..1983688 1 NC_013960.1 PFAM: Calcium-binding EF-hand-containing protein; SMART: Calcium-binding EF-hand-containing protein; KEGG: dds:Ddes_2120 signal transduction protein with EFhand domain; calcium-binding EF-hand protein-containing protein 1983688 8916911 Nhal_1920 Nitrosococcus halophilus Nc4 calcium-binding EF-hand protein-containing protein YP_003527416.1 1983314 D 472759 CDS YP_003527417.1 292491978 8916912 1984105..1985481 1 NC_013960.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: rpb:RPB_0926 phage integrase; integrase family protein 1985481 8916912 Nhal_1921 Nitrosococcus halophilus Nc4 integrase family protein YP_003527417.1 1984105 D 472759 CDS YP_003527418.1 292491979 8916914 1986573..1986671 1 NC_013960.1 hypothetical protein 1986671 8916914 Nhal_1923 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527418.1 1986573 D 472759 CDS YP_003527419.1 292491980 8916915 1986777..1987826 1 NC_013960.1 KEGG: ftn:FTN_0013 hypothetical protein; hypothetical protein 1987826 8916915 Nhal_1924 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527419.1 1986777 D 472759 CDS YP_003527420.1 292491981 8916916 complement(1988043..1988303) 1 NC_013960.1 hypothetical protein 1988303 8916916 Nhal_1925 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527420.1 1988043 R 472759 CDS YP_003527421.1 292491982 8916918 1988652..1989704 1 NC_013960.1 TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: noc:Noc_1645 queuosine biosynthesis protein; S-adenosylmethionine/tRNA-ribosyltransferase- isomerase 1989704 8916918 Nhal_1926 Nitrosococcus halophilus Nc4 S-adenosylmethionine/tRNA-ribosyltransferase- isomerase YP_003527421.1 1988652 D 472759 CDS YP_003527422.1 292491983 8916919 1989708..1990436 1 NC_013960.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: noc:Noc_1646 RNA methyltransferase TrmH, group 1; TrmH family RNA methyltransferase 1990436 8916919 Nhal_1927 Nitrosococcus halophilus Nc4 TrmH family RNA methyltransferase YP_003527422.1 1989708 D 472759 CDS YP_003527423.1 292491984 8916920 1990508..1991317 1 NC_013960.1 KEGG: noc:Noc_1647 serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; serine O-acetyltransferase 1991317 8916920 Nhal_1928 Nitrosococcus halophilus Nc4 serine O-acetyltransferase YP_003527423.1 1990508 D 472759 CDS YP_003527424.1 292491985 8916921 1991391..1991891 1 NC_013960.1 TIGRFAM: iron-sulfur cluster assembly transcription factor IscR; Rrf2 family transcriptional regulator; PFAM: protein of unknown function UPF0074; KEGG: noc:Noc_1648 iron-sulphur cluster assembly transcription factor IscR; iron-sulfur cluster assembly transcription factor IscR 1991891 8916921 Nhal_1929 Nitrosococcus halophilus Nc4 iron-sulfur cluster assembly transcription factor IscR YP_003527424.1 1991391 D 472759 CDS YP_003527425.1 292491986 8916922 1991914..1993059 1 NC_013960.1 PFAM: aminotransferase class V; KEGG: noc:Noc_1649 aminotransferase, class V; Cysteine desulfurase 1993059 8916922 Nhal_1930 Nitrosococcus halophilus Nc4 Cysteine desulfurase YP_003527425.1 1991914 D 472759 CDS YP_003527426.1 292491987 8916923 1993082..1993405 1 NC_013960.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: noc:Noc_1650 HesB/YadR/YfhF; iron-sulfur cluster assembly accessory protein 1993405 8916923 Nhal_1931 Nitrosococcus halophilus Nc4 iron-sulfur cluster assembly accessory protein YP_003527426.1 1993082 D 472759 CDS YP_003527427.1 292491988 8916924 1993432..1993638 1 NC_013960.1 KEGG: har:HEAR0908 hypothetical protein; hypothetical protein 1993638 8916924 Nhal_1932 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527427.1 1993432 D 472759 CDS YP_003527428.1 292491989 8916925 complement(1993722..1994390) 1 NC_013960.1 PFAM: protein of unknown function UPF0005; KEGG: noc:Noc_1654 hypothetical protein; hypothetical protein 1994390 8916925 Nhal_1933 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527428.1 1993722 R 472759 CDS YP_003527429.1 292491990 8916927 1994839..1994934 1 NC_013960.1 hypothetical protein 1994934 8916927 Nhal_1934 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527429.1 1994839 D 472759 CDS YP_003527430.1 292491991 8916928 1994974..1996455 1 NC_013960.1 PFAM: protein of unknown function UPF0061; KEGG: noc:Noc_0691 hypothetical protein; hypothetical protein 1996455 8916928 Nhal_1935 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527430.1 1994974 D 472759 CDS YP_003527431.1 292491992 8916929 1997114..1997473 1 NC_013960.1 hypothetical protein 1997473 8916929 Nhal_1936 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527431.1 1997114 D 472759 CDS YP_003527432.1 292491993 8916930 join(1997503..1997991,1997991..1998572) 1 NC_013960.1 KEGG: mch:Mchl_5622 transposase and inactivated derivatives-like protein; hypothetical protein 1998572 8916930 Nhal_1937 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527432.1 1997503 D 472759 CDS YP_003527433.1 292491994 8916931 1998582..1999850 1 NC_013960.1 PFAM: protein of unknown function DUF839; KEGG: tbd:Tbd_1423 phosphatase; hypothetical protein 1999850 8916931 Nhal_1938 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527433.1 1998582 D 472759 CDS YP_003527434.1 292491995 8916932 complement(1999966..2001651) 1 NC_013960.1 KEGG: mno:Mnod_5657 tetratricopeptide TPR_4; hypothetical protein 2001651 8916932 Nhal_1939 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527434.1 1999966 R 472759 CDS YP_003527435.1 292491996 8916933 2001776..2002243 1 NC_013960.1 PFAM: cell wall hydrolase SleB; KEGG: ppg:PputGB1_2359 cell wall hydrolase SleB; cell wall hydrolase SleB 2002243 8916933 Nhal_1940 Nitrosococcus halophilus Nc4 cell wall hydrolase SleB YP_003527435.1 2001776 D 472759 CDS YP_003527436.1 292491997 8916934 2002628..2004820 1 NC_013960.1 KEGG: mca:MCA0657 CRISPR-associated helicase Cas3; TIGRFAM: CRISPR-associated helicase Cas3; PFAM: DEAD/DEAH box helicase domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: DEAD-like helicase; CRISPR-associated helicase Cas3 2004820 8916934 Nhal_1941 Nitrosococcus halophilus Nc4 CRISPR-associated helicase Cas3 YP_003527436.1 2002628 D 472759 CDS YP_003527437.1 292491998 8916935 2004876..2005553 1 NC_013960.1 TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: mca:MCA0656 CRISPR-associated Csd1 family protein; CRISPR-associated protein Cas5 family 2005553 8916935 Nhal_1942 Nitrosococcus halophilus Nc4 CRISPR-associated protein Cas5 family YP_003527437.1 2004876 D 472759 CDS YP_003527438.1 292491999 8916936 2005550..2007298 1 NC_013960.1 TIGRFAM: CRISPR-associated protein, Csd1 family; KEGG: mca:MCA0655 CRISPR-associated Csd1 family protein; CRISPR-associated protein, Csd1 family 2007298 8916936 Nhal_1943 Nitrosococcus halophilus Nc4 CRISPR-associated protein, Csd1 family YP_003527438.1 2005550 D 472759 CDS YP_003527439.1 292492000 8916937 2007313..2008197 1 NC_013960.1 TIGRFAM: CRISPR-associated protein, Csd2 family; CRISPR-associated protein, CT1132 family; PFAM: CRISPR-associated protein TM1801; KEGG: mca:MCA0654 CRISPR-associated Csh2 family protein; CRISPR-associated protein, Csd2 family 2008197 8916937 Nhal_1944 Nitrosococcus halophilus Nc4 CRISPR-associated protein, Csd2 family YP_003527439.1 2007313 D 472759 CDS YP_003527440.1 292492001 8916938 2008201..2008851 1 NC_013960.1 TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: mca:MCA0652 CRISPR-associated Cas4 family protein; CRISPR-associated protein Cas4 2008851 8916938 Nhal_1945 Nitrosococcus halophilus Nc4 CRISPR-associated protein Cas4 YP_003527440.1 2008201 D 472759 CDS YP_003527441.1 292492002 8916939 2008836..2009870 1 NC_013960.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: mca:MCA0651 CRISPR-associated Cas1 family protein; CRISPR-associated protein Cas1 2009870 8916939 Nhal_1946 Nitrosococcus halophilus Nc4 CRISPR-associated protein Cas1 YP_003527441.1 2008836 D 472759 CDS YP_003527442.1 292492003 8916940 2009885..2010175 1 NC_013960.1 TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: mca:MCA0650 CRISPR-associated Cas2 family protein; CRISPR-associated protein Cas2 2010175 8916940 Nhal_1947 Nitrosococcus halophilus Nc4 CRISPR-associated protein Cas2 YP_003527442.1 2009885 D 472759 CDS YP_003527443.1 292492004 8916941 complement(2010703..2011932) 1 NC_013960.1 PFAM: sodium/hydrogen exchanger; KEGG: sun:SUN_0480 NhaA family Na(+)/H(+) antiporter; sodium/hydrogen exchanger 2011932 8916941 Nhal_1948 Nitrosococcus halophilus Nc4 sodium/hydrogen exchanger YP_003527443.1 2010703 R 472759 CDS YP_003527444.1 292492005 8916942 complement(2011922..2012242) 1 NC_013960.1 TIGRFAM: F0F1-ATPase; KEGG: mmw:Mmwyl1_1956 F0F1-ATPase; F0F1-ATPase 2012242 8916942 Nhal_1949 Nitrosococcus halophilus Nc4 F0F1-ATPase YP_003527444.1 2011922 R 472759 CDS YP_003527445.1 292492006 8916943 complement(2012247..2012645) 1 NC_013960.1 TIGRFAM: ATP synthase F1 subunit epsilon; PFAM: H+transporting two-sector ATPase delta/subunit epsilon; KEGG: sat:SYN_02098 F0F1 ATP synthase subunit epsilon; ATP synthase F1 subunit epsilon 2012645 8916943 Nhal_1950 Nitrosococcus halophilus Nc4 ATP synthase F1 subunit epsilon YP_003527445.1 2012247 R 472759 CDS YP_003527446.1 292492007 8916944 complement(2012642..2014054) 1 NC_013960.1 KEGG: mmw:Mmwyl1_1954 F0F1 ATP synthase subunit beta; TIGRFAM: alternate F1F0 ATPase, F1 subunit beta; ATP synthase F1 beta subunit; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; alternate F1F0 ATPase, F1 subunit beta 2014054 8916944 Nhal_1951 Nitrosococcus halophilus Nc4 alternate F1F0 ATPase, F1 subunit beta YP_003527446.1 2012642 R 472759 CDS YP_003527447.1 292492008 8916945 2014364..2014873 1 NC_013960.1 TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: afr:AFE_0936 hydrogenase maturation protease; hydrogenase maturation protease 2014873 8916945 Nhal_1952 Nitrosococcus halophilus Nc4 hydrogenase maturation protease YP_003527447.1 2014364 D 472759 CDS YP_003527448.1 292492009 8916946 2014877..2016307 1 NC_013960.1 TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA; sodium/hydrogen exchanger; KEGG: pca:Pcar_2456 Na+/H+ antiporter; Na+/H+ antiporter NhaA 2016307 8916946 Nhal_1953 Nitrosococcus halophilus Nc4 Na+/H+ antiporter NhaA YP_003527448.1 2014877 D 472759 CDS YP_003527449.1 292492010 8916947 complement(2016335..2017612) 1 NC_013960.1 PFAM: major facilitator superfamily MFS_1; KEGG: noc:Noc_1010 major facilitator transporter; major facilitator superfamily protein 2017612 8916947 Nhal_1954 Nitrosococcus halophilus Nc4 major facilitator superfamily protein YP_003527449.1 2016335 R 472759 CDS YP_003527450.1 292492011 8916948 complement(2017660..2018874) 1 NC_013960.1 PFAM: peptidase M50; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: noc:Noc_1011 peptidase M50; peptidase M50 2018874 8916948 Nhal_1955 Nitrosococcus halophilus Nc4 peptidase M50 YP_003527450.1 2017660 R 472759 CDS YP_003527451.1 292492012 8916949 complement(2019272..2020282) 1 NC_013960.1 KEGG: tbd:Tbd_1466 hypothetical protein; hypothetical protein 2020282 8916949 Nhal_1956 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527451.1 2019272 R 472759 CDS YP_003527452.1 292492013 8916950 complement(2020337..2020669) 1 NC_013960.1 PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; KEGG: dno:DNO_1135 formamidopyrimidine-DNA glycosylase; Formamidopyrimidine-DNA glycosylase catalytic domain-containing protein 2020669 8916950 Nhal_1957 Nitrosococcus halophilus Nc4 Formamidopyrimidine-DNA glycosylase catalytic domain-containing protein YP_003527452.1 2020337 R 472759 CDS YP_003527453.1 292492014 8916951 complement(2020671..2022392) 1 NC_013960.1 PFAM: PHP domain protein; SMART: DNA polymerase X; phosphoesterase PHP domain protein; Helix-hairpin-helix DNA-binding class 1; KEGG: cbc:CbuK_1370 DNA polymerase X family; PHP domain-containing protein 2022392 8916951 Nhal_1958 Nitrosococcus halophilus Nc4 PHP domain-containing protein YP_003527453.1 2020671 R 472759 CDS YP_003527454.1 292492015 8916952 2022603..2022968 1 NC_013960.1 KEGG: hypothetical protein LOC682438; hypothetical protein 2022968 8916952 Nhal_1959 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527454.1 2022603 D 472759 CDS YP_003527455.1 292492016 8916953 2023069..2023461 1 NC_013960.1 KEGG: bcm:Bcenmc03_2554 hypothetical protein; hypothetical protein 2023461 8916953 Nhal_1960 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527455.1 2023069 D 472759 CDS YP_003527456.1 292492017 8916954 2023839..2024489 1 NC_013960.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: noc:Noc_1013 isopropylmalate isomerase small subunit; 3-isopropylmalate dehydratase, small subunit 2024489 8916954 Nhal_1961 Nitrosococcus halophilus Nc4 3-isopropylmalate dehydratase, small subunit YP_003527456.1 2023839 D 472759 CDS YP_003527457.1 292492018 8916955 2024490..2025578 1 NC_013960.1 KEGG: noc:Noc_1014 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 2025578 8916955 Nhal_1962 Nitrosococcus halophilus Nc4 3-isopropylmalate dehydrogenase YP_003527457.1 2024490 D 472759 CDS YP_003527458.1 292492019 8916956 2025623..2026645 1 NC_013960.1 KEGG: noc:Noc_1016 aspartate-semialdehyde dehydrogenase, USG-1 related; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: semialdehyde dehydrogenase dimerisation region; semialdehyde dehydrogenase NAD - binding; aspartate-semialdehyde dehydrogenase 2026645 8916956 Nhal_1963 Nitrosococcus halophilus Nc4 aspartate-semialdehyde dehydrogenase YP_003527458.1 2025623 D 472759 CDS YP_003527459.1 292492020 8916957 2026747..2029440 1 NC_013960.1 KEGG: noc:Noc_1017 hypothetical protein; hypothetical protein 2029440 8916957 Nhal_1964 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527459.1 2026747 D 472759 CDS YP_003527460.1 292492021 8916958 2029543..2030298 1 NC_013960.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: xau:Xaut_2555 phosphoesterase PA-phosphatase related; PA-phosphatase-like phosphoesterase 2030298 8916958 Nhal_1965 Nitrosococcus halophilus Nc4 PA-phosphatase-like phosphoesterase YP_003527460.1 2029543 D 472759 CDS YP_003527461.1 292492022 8916959 2030413..2030958 1 NC_013960.1 PFAM: transposase IS605 OrfB; KEGG: noc:Noc_1587 transposase; transposase IS605 OrfB 2030958 8916959 Nhal_1966 Nitrosococcus halophilus Nc4 transposase IS605 OrfB YP_003527461.1 2030413 D 472759 CDS YP_003527462.1 292492023 8916960 2030994..2031773 1 NC_013960.1 KEGG: noc:Noc_1018 pseudouridylate synthase; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; tRNA pseudouridine synthase A 2031773 8916960 Nhal_1967 Nitrosococcus halophilus Nc4 tRNA pseudouridine synthase A YP_003527462.1 2030994 D 472759 CDS YP_003527463.1 292492024 8916961 2031788..2032414 1 NC_013960.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: noc:Noc_1019 N-(5'-phosphoribosyl)anthranilate isomerase; phosphoribosylanthranilate isomerase 2032414 8916961 Nhal_1968 Nitrosococcus halophilus Nc4 phosphoribosylanthranilate isomerase YP_003527463.1 2031788 D 472759 CDS YP_003527464.1 292492025 8916962 2032404..2033636 1 NC_013960.1 TIGRFAM: tryptophan synthase subunit beta; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; KEGG: noc:Noc_1020 tryptophan synthase subunit beta; tryptophan synthase subunit beta 2033636 8916962 Nhal_1969 Nitrosococcus halophilus Nc4 tryptophan synthase subunit beta YP_003527464.1 2032404 D 472759 CDS YP_003527465.1 292492026 8916963 2033633..2034448 1 NC_013960.1 KEGG: noc:Noc_1021 tryptophan synthase; TIGRFAM: tryptophan synthase, subunit alpha; PFAM: tryptophan synthase alpha chain; tryptophan synthase subunit alpha 2034448 8916963 Nhal_1970 Nitrosococcus halophilus Nc4 tryptophan synthase subunit alpha YP_003527465.1 2033633 D 472759 CDS YP_003527466.1 292492027 8916964 2034458..2035318 1 NC_013960.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, subunit beta; KEGG: noc:Noc_1022 acetyl-CoA carboxylase carboxyl transferase, subunit beta; acetyl-CoA carboxylase, carboxyl transferase subunit beta 2035318 8916964 Nhal_1971 Nitrosococcus halophilus Nc4 acetyl-CoA carboxylase, carboxyl transferase subunit beta YP_003527466.1 2034458 D 472759 CDS YP_003527467.1 292492028 8916965 2035527..2036834 1 NC_013960.1 KEGG: noc:Noc_1023 folylpolyglutamate synthetase; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; FolC bifunctional protein 2036834 8916965 Nhal_1972 Nitrosococcus halophilus Nc4 FolC bifunctional protein YP_003527467.1 2035527 D 472759 CDS YP_003527468.1 292492029 8916966 complement(2036885..2037616) 1 NC_013960.1 KEGG: noc:Noc_1026 hypothetical protein; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase; tRNA (guanine-N(7)-)-methyltransferase 2037616 8916966 Nhal_1973 Nitrosococcus halophilus Nc4 tRNA (guanine-N(7)-)-methyltransferase YP_003527468.1 2036885 R 472759 CDS YP_003527469.1 292492030 8916967 complement(2037664..2038185) 1 NC_013960.1 PFAM: MarR family transcriptional regulator; SMART: MarR family transcriptional regulator; KEGG: noc:Noc_1027 MarR family transcriptional regulator; MarR family transcriptional regulator 2038185 8916967 Nhal_1974 Nitrosococcus halophilus Nc4 MarR family transcriptional regulator YP_003527469.1 2037664 R 472759 CDS YP_003527470.1 292492031 8916968 2038403..2038804 1 NC_013960.1 PFAM: Ectoine synthase; Cupin 2 conserved barrel domain protein; KEGG: noc:Noc_1028 L-ectoine synthase; Ectoine synthase 2038804 8916968 Nhal_1975 Nitrosococcus halophilus Nc4 Ectoine synthase YP_003527470.1 2038403 D 472759 CDS YP_003527471.1 292492032 8916969 2038872..2040332 1 NC_013960.1 PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; KEGG: noc:Noc_1029 aspartate kinase; aspartate/glutamate/uridylate kinase 2040332 8916969 Nhal_1976 Nitrosococcus halophilus Nc4 aspartate/glutamate/uridylate kinase YP_003527471.1 2038872 D 472759 CDS YP_003527472.1 292492033 8916970 complement(2040329..2042695) 1 NC_013960.1 KEGG: bpy:Bphyt_5296 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; hypothetical protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; PAS sensor protein 2042695 8916970 Nhal_1977 Nitrosococcus halophilus Nc4 PAS sensor protein YP_003527472.1 2040329 R 472759 CDS YP_003527473.1 292492034 8916971 2042761..2044029 1 NC_013960.1 TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: spe:Spro_1040 exonuclease subunit SbcD; nuclease SbcCD subunit D 2044029 8916971 Nhal_1978 Nitrosococcus halophilus Nc4 nuclease SbcCD subunit D YP_003527473.1 2042761 D 472759 CDS YP_003527474.1 292492035 8916972 2044026..2047685 1 NC_013960.1 PFAM: SMC domain protein; KEGG: hch:HCH_00898 ATPase involved in DNA repair; SMC domain-containing protein 2047685 8916972 Nhal_1979 Nitrosococcus halophilus Nc4 SMC domain-containing protein YP_003527474.1 2044026 D 472759 CDS YP_003527475.1 292492036 8916973 2047752..2048123 1 NC_013960.1 KEGG: mca:MCA1292 hypothetical protein; hypothetical protein 2048123 8916973 Nhal_1980 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527475.1 2047752 D 472759 CDS YP_003527476.1 292492037 8916974 complement(2048322..2048591) 1 NC_013960.1 KEGG: bxe:Bxe_B0464 hypothetical protein; hypothetical protein 2048591 8916974 Nhal_1981 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527476.1 2048322 R 472759 CDS YP_003527477.1 292492038 8916975 complement(2048657..2048944) 1 NC_013960.1 KEGG: cti:RALTA_A2184 hypothetical protein; hypothetical protein 2048944 8916975 Nhal_1982 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527477.1 2048657 R 472759 CDS YP_003527478.1 292492039 8916976 2049120..2049305 1 NC_013960.1 hypothetical protein 2049305 8916976 Nhal_1983 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527478.1 2049120 D 472759 CDS YP_003527479.1 292492040 8916977 2049565..2051727 1 NC_013960.1 PFAM: N-6 DNA methylase; KEGG: dol:Dole_2236 N-6 DNA methylase; adenine-specific DNA-methyltransferase 2051727 8916977 Nhal_1984 Nitrosococcus halophilus Nc4 adenine-specific DNA-methyltransferase YP_003527479.1 2049565 D 472759 CDS YP_003527480.1 292492041 8916978 2051724..2053079 1 NC_013960.1 PFAM: restriction modification system DNA specificity domain; KEGG: pcr:Pcryo_2364 restriction modification system DNA specificity subunit; restriction modification system DNA specificity domain-containing protein 2053079 8916978 Nhal_1985 Nitrosococcus halophilus Nc4 restriction modification system DNA specificity domain-containing protein YP_003527480.1 2051724 D 472759 CDS YP_003527481.1 292492042 8916979 2053223..2054320 1 NC_013960.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: sdn:Sden_0294 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein Fic 2054320 8916979 Nhal_1986 Nitrosococcus halophilus Nc4 filamentation induced by cAMP protein Fic YP_003527481.1 2053223 D 472759 CDS YP_003527482.1 292492043 8916980 2054324..2058133 1 NC_013960.1 KEGG: dol:Dole_2239 HsdR family type I site-specific deoxyribonuclease; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; protein of unknown function DUF559; SMART: DEAD-like helicase; type I site-specific deoxyribonuclease, HsdR family 2058133 8916980 Nhal_1987 Nitrosococcus halophilus Nc4 type I site-specific deoxyribonuclease, HsdR family YP_003527482.1 2054324 D 472759 CDS YP_003527483.1 292492044 8916981 2058407..2059612 1 NC_013960.1 PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: geo:Geob_2032 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 2059612 8916981 Nhal_1988 Nitrosococcus halophilus Nc4 transposase IS116/IS110/IS902 family protein YP_003527483.1 2058407 D 472759 CDS YP_003527484.1 292492045 8916982 complement(2059876..2060166) 1 NC_013960.1 KEGG: bpy:Bphyt_3997 hypothetical protein; hypothetical protein 2060166 8916982 Nhal_1989 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527484.1 2059876 R 472759 CDS YP_003527485.1 292492046 8916983 2060768..2061763 1 NC_013960.1 KEGG: sde:Sde_0444 hypothetical protein; hypothetical protein 2061763 8916983 Nhal_1990 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527485.1 2060768 D 472759 CDS YP_003527486.1 292492047 8916984 2061851..2062303 1 NC_013960.1 hypothetical protein 2062303 8916984 Nhal_1991 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527486.1 2061851 D 472759 CDS YP_003527487.1 292492048 8916985 2062526..2062756 1 NC_013960.1 KEGG: noc:Noc_2072 hypothetical protein; hypothetical protein 2062756 8916985 Nhal_1992 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527487.1 2062526 D 472759 CDS YP_003527488.1 292492049 8916986 2062753..2062896 1 NC_013960.1 KEGG: noc:Noc_2071 plasmid stabilization system protein protein; plasmid stabilization system protein 2062896 8916986 Nhal_1993 Nitrosococcus halophilus Nc4 plasmid stabilization system protein YP_003527488.1 2062753 D 472759 CDS YP_003527489.1 292492050 8916987 2062970..2063392 1 NC_013960.1 PFAM: transposase IS200-family protein; KEGG: noc:Noc_0387 transposase IS200; transposase IS200-family protein 2063392 8916987 Nhal_1994 Nitrosococcus halophilus Nc4 transposase IS200-family protein YP_003527489.1 2062970 D 472759 CDS YP_003527490.1 292492051 8916988 2063393..2064514 1 NC_013960.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0388 IS891/IS1136/IS1341 transposase; transposase, IS605 OrfB family 2064514 8916988 Nhal_1995 Nitrosococcus halophilus Nc4 transposase, IS605 OrfB family YP_003527490.1 2063393 D 472759 CDS YP_003527491.1 292492052 8916989 complement(join(2064672..2065256,2065255..2065740)) 1 NC_013960.1 KEGG: mch:Mchl_5622 transposase and inactivated derivatives-like protein; hypothetical protein 2065740 8916989 Nhal_1996 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527491.1 2064672 R 472759 CDS YP_003527492.1 292492053 8916990 2066263..2066700 1 NC_013960.1 hypothetical protein 2066700 8916990 Nhal_1997 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527492.1 2066263 D 472759 CDS YP_003527493.1 292492054 8916992 2067082..2067378 1 NC_013960.1 TIGRFAM: conserved hypothetical protein; PFAM: Selenoprotein W-related; KEGG: noc:Noc_1092 SelT/SelW/SelH selenoprotein; hypothetical protein 2067378 8916992 Nhal_1999 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527493.1 2067082 D 472759 CDS YP_003527494.1 292492055 8916993 2067597..2068742 1 NC_013960.1 PFAM: transposase IS4 family protein; KEGG: aby:ABAYE3624 IS4 family transposase; transposase IS4 family protein 2068742 8916993 Nhal_2000 Nitrosococcus halophilus Nc4 transposase IS4 family protein YP_003527494.1 2067597 D 472759 CDS YP_003527495.1 292492056 8916994 complement(2068812..2069102) 1 NC_013960.1 KEGG: bpy:Bphyt_3997 hypothetical protein; hypothetical protein 2069102 8916994 Nhal_2001 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527495.1 2068812 R 472759 CDS YP_003527496.1 292492057 8916995 2069225..2069521 1 NC_013960.1 hypothetical protein 2069521 8916995 Nhal_2002 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527496.1 2069225 D 472759 CDS YP_003527497.1 292492058 8916996 complement(2069541..2070686) 1 NC_013960.1 PFAM: protein of unknown function DUF819; KEGG: pla:Plav_0567 hypothetical protein; hypothetical protein 2070686 8916996 Nhal_2003 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527497.1 2069541 R 472759 CDS YP_003527498.1 292492059 8916997 2070784..2072214 1 NC_013960.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: cvi:CV_2697 TldD protein family; peptidase U62 modulator of DNA gyrase 2072214 8916997 Nhal_2004 Nitrosococcus halophilus Nc4 peptidase U62 modulator of DNA gyrase YP_003527498.1 2070784 D 472759 CDS YP_003527499.1 292492060 8916998 2072215..2073537 1 NC_013960.1 KEGG: tgr:Tgr7_2559 hypothetical protein; hypothetical protein 2073537 8916998 Nhal_2005 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527499.1 2072215 D 472759 CDS YP_003527500.1 292492061 8916999 2073576..2074931 1 NC_013960.1 KEGG: noc:Noc_1356 hypothetical protein; hypothetical protein 2074931 8916999 Nhal_2006 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527500.1 2073576 D 472759 CDS YP_003527501.1 292492062 8917000 2074960..2076147 1 NC_013960.1 PFAM: protein of unknown function DUF399; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: noc:Noc_1357 hypothetical protein; hypothetical protein 2076147 8917000 Nhal_2007 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527501.1 2074960 D 472759 CDS YP_003527502.1 292492063 8917001 complement(2076686..2077261) 1 NC_013960.1 KEGG: afw:Anae109_0557 hypothetical protein; hypothetical protein 2077261 8917001 Nhal_2008 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527502.1 2076686 R 472759 CDS YP_003527503.1 292492064 8917002 complement(2077269..2078426) 1 NC_013960.1 PFAM: peptidase M48 Ste24p; KEGG: afw:Anae109_0556 peptidase M48 Ste24p; peptidase M48 Ste24p 2078426 8917002 Nhal_2009 Nitrosococcus halophilus Nc4 peptidase M48 Ste24p YP_003527503.1 2077269 R 472759 CDS YP_003527504.1 292492065 8917003 complement(2078463..2079269) 1 NC_013960.1 hypothetical protein 2079269 8917003 Nhal_2010 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527504.1 2078463 R 472759 CDS YP_003527505.1 292492066 8917004 2079451..2079894 1 NC_013960.1 PFAM: protein of unknown function UPF0153; KEGG: noc:Noc_1358 hypothetical protein; hypothetical protein 2079894 8917004 Nhal_2011 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527505.1 2079451 D 472759 CDS YP_003527506.1 292492067 8917005 complement(2079963..2082635) 1 NC_013960.1 PFAM: CoA-binding protein; GCN5-related N-acetyltransferase; KEGG: nmu:Nmul_A1676 GCN5-related N-acetyltransferase; CoA-binding protein 2082635 8917005 Nhal_2012 Nitrosococcus halophilus Nc4 CoA-binding protein YP_003527506.1 2079963 R 472759 CDS YP_003527507.1 292492068 8917006 complement(2083062..2083505) 1 NC_013960.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: abo:ABO_0748 DNA-binding protein; histone family protein DNA-binding protein 2083505 8917006 Nhal_2013 Nitrosococcus halophilus Nc4 histone family protein DNA-binding protein YP_003527507.1 2083062 R 472759 CDS YP_003527508.1 292492069 8917007 complement(2084201..2084677) 1 NC_013960.1 KEGG: noc:Noc_1360 hypothetical protein; hypothetical protein 2084677 8917007 Nhal_2014 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527508.1 2084201 R 472759 CDS YP_003527509.1 292492070 8917008 complement(2084843..2085166) 1 NC_013960.1 PFAM: small multidrug resistance protein; KEGG: dvl:Dvul_1177 small multidrug resistance protein; small multidrug resistance protein 2085166 8917008 Nhal_2015 Nitrosococcus halophilus Nc4 small multidrug resistance protein YP_003527509.1 2084843 R 472759 CDS YP_003527510.1 292492071 8917009 complement(2085385..2086557) 1 NC_013960.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: noc:Noc_1361 pilus retraction protein PilT; twitching motility protein 2086557 8917009 Nhal_2016 Nitrosococcus halophilus Nc4 twitching motility protein YP_003527510.1 2085385 R 472759 CDS YP_003527511.1 292492072 8917010 2086683..2087597 1 NC_013960.1 PFAM: Auxin Efflux Carrier; KEGG: noc:Noc_1362 auxin efflux carrier; auxin efflux carrier 2087597 8917010 Nhal_2017 Nitrosococcus halophilus Nc4 auxin efflux carrier YP_003527511.1 2086683 D 472759 CDS YP_003527512.1 292492073 8917011 complement(2087610..2088356) 1 NC_013960.1 PFAM: molybdopterin binding domain; KEGG: noc:Noc_1363 molybdopterin binding domain-containing protein; molybdopterin binding domain-containing protein 2088356 8917011 Nhal_2018 Nitrosococcus halophilus Nc4 molybdopterin binding domain-containing protein YP_003527512.1 2087610 R 472759 CDS YP_003527513.1 292492074 8917012 2088649..2090571 1 NC_013960.1 SMART: helicase c2; KEGG: noc:Noc_1364 helicase C2; helicase c2 2090571 8917012 Nhal_2019 Nitrosococcus halophilus Nc4 helicase c2 YP_003527513.1 2088649 D 472759 CDS YP_003527514.1 292492075 8917013 complement(2090484..2091497) 1 NC_013960.1 PFAM: sodium symporter; KEGG: noc:Noc_1365 solute/sodium symporter; sodium symporter 2091497 8917013 Nhal_2020 Nitrosococcus halophilus Nc4 sodium symporter YP_003527514.1 2090484 R 472759 CDS YP_003527515.1 292492076 8917014 2091667..2091894 1 NC_013960.1 hypothetical protein 2091894 8917014 Nhal_2021 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527515.1 2091667 D 472759 CDS YP_003527516.1 292492077 8917015 2091882..2092271 1 NC_013960.1 PFAM: PilT protein domain protein; KEGG: nha:Nham_4553 PilT protein-like; PilT protein domain-containing protein 2092271 8917015 Nhal_2022 Nitrosococcus halophilus Nc4 PilT protein domain-containing protein YP_003527516.1 2091882 D 472759 CDS YP_003527517.1 292492078 8917016 2092454..2095582 1 NC_013960.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase ; helicase; KEGG: mxa:MXAN_7274 SNF2/helicase domain-containing protein; SNF2-like protein 2095582 8917016 Nhal_2023 Nitrosococcus halophilus Nc4 SNF2-like protein YP_003527517.1 2092454 D 472759 CDS YP_003527518.1 292492079 8917017 2095586..2096455 1 NC_013960.1 PFAM: zinc finger SWIM domain protein; KEGG: mxa:MXAN_7273 SWIM zinc finger domain-containing protein; zinc finger SWIM domain-containing protein 2096455 8917017 Nhal_2024 Nitrosococcus halophilus Nc4 zinc finger SWIM domain-containing protein YP_003527518.1 2095586 D 472759 CDS YP_003527519.1 292492080 8917018 complement(2096450..2097103) 1 NC_013960.1 PFAM: LmbE family protein; KEGG: noc:Noc_1370 LmbE-like protein; LmbE family protein 2097103 8917018 Nhal_2025 Nitrosococcus halophilus Nc4 LmbE family protein YP_003527519.1 2096450 R 472759 CDS YP_003527520.1 292492081 8917019 complement(2097476..2098051) 1 NC_013960.1 KEGG: noc:Noc_1371 hypothetical protein; hypothetical protein 2098051 8917019 Nhal_2026 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527520.1 2097476 R 472759 CDS YP_003527521.1 292492082 8917020 2098198..2099838 1 NC_013960.1 KEGG: mca:MCA0222 hypothetical protein; hypothetical protein 2099838 8917020 Nhal_2027 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527521.1 2098198 D 472759 CDS YP_003527522.1 292492083 8917021 complement(2099849..2100373) 1 NC_013960.1 KEGG: noc:Noc_1372 hypothetical protein; hypothetical protein 2100373 8917021 Nhal_2028 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527522.1 2099849 R 472759 CDS YP_003527523.1 292492084 8917022 complement(2100497..2100592) 1 NC_013960.1 hypothetical protein 2100592 8917022 Nhal_2029 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527523.1 2100497 R 472759 CDS YP_003527524.1 292492085 8917023 complement(2100651..2102030) 1 NC_013960.1 PFAM: SCP-like extracellular; KEGG: noc:Noc_1373 hypothetical protein; SCP-like extracellular protein 2102030 8917023 Nhal_2030 Nitrosococcus halophilus Nc4 SCP-like extracellular protein YP_003527524.1 2100651 R 472759 CDS YP_003527525.1 292492086 8917024 complement(2102164..2104908) 1 NC_013960.1 KEGG: scl:sce2679 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; hypothetical protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; PAS sensor protein 2104908 8917024 Nhal_2031 Nitrosococcus halophilus Nc4 PAS sensor protein YP_003527525.1 2102164 R 472759 CDS YP_003527526.1 292492087 8917025 2105131..2106609 1 NC_013960.1 PFAM: ATPase AAA; SMART: AAA ATPase; KEGG: noc:Noc_1374 ATPase AAA; ATPase AAA 2106609 8917025 Nhal_2032 Nitrosococcus halophilus Nc4 ATPase AAA YP_003527526.1 2105131 D 472759 CDS YP_003527527.1 292492088 8917026 2106631..2107620 1 NC_013960.1 PFAM: alpha/beta hydrolase fold; KEGG: noc:Noc_1375 lysophospholipase; alpha/beta hydrolase fold protein 2107620 8917026 Nhal_2033 Nitrosococcus halophilus Nc4 alpha/beta hydrolase fold protein YP_003527527.1 2106631 D 472759 CDS YP_003527528.1 292492089 8917027 2107899..2108453 1 NC_013960.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: noc:Noc_1376 hypothetical protein; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 2108453 8917027 Nhal_2034 Nitrosococcus halophilus Nc4 alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen YP_003527528.1 2107899 D 472759 CDS YP_003527529.1 292492090 8917028 2108431..2110560 1 NC_013960.1 PFAM: protein of unknown function DUF839; KEGG: noc:Noc_2144 hypothetical protein; hypothetical protein 2110560 8917028 Nhal_2035 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527529.1 2108431 D 472759 CDS YP_003527530.1 292492091 8917029 complement(2110592..2111827) 1 NC_013960.1 KEGG: noc:Noc_2145 L-sorbosone dehydrogenase; L-sorbosone dehydrogenase 2111827 8917029 Nhal_2036 Nitrosococcus halophilus Nc4 L-sorbosone dehydrogenase YP_003527530.1 2110592 R 472759 CDS YP_003527531.1 292492092 8917030 complement(2112018..2112488) 1 NC_013960.1 PFAM: cyclase/dehydrase; KEGG: noc:Noc_2146 hypothetical protein; cyclase/dehydrase 2112488 8917030 Nhal_2037 Nitrosococcus halophilus Nc4 cyclase/dehydrase YP_003527531.1 2112018 R 472759 CDS YP_003527532.1 292492093 8917031 2112609..2113148 1 NC_013960.1 PFAM: protein of unknown function DUF336; KEGG: noc:Noc_2147 hypothetical protein; hypothetical protein 2113148 8917031 Nhal_2038 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527532.1 2112609 D 472759 CDS YP_003527533.1 292492094 8917032 2113348..2114859 1 NC_013960.1 PFAM: sporulation domain protein; KEGG: zipA; zipper-like domain-containing protein; sporulation domain-containing protein 2114859 8917032 Nhal_2039 Nitrosococcus halophilus Nc4 sporulation domain-containing protein YP_003527533.1 2113348 D 472759 CDS YP_003527534.1 292492095 8917033 complement(2114886..2115644) 1 NC_013960.1 PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: noc:Noc_2148 heat shock protein DnaJ-like; heat shock protein DnaJ domain-containing protein 2115644 8917033 Nhal_2040 Nitrosococcus halophilus Nc4 heat shock protein DnaJ domain-containing protein YP_003527534.1 2114886 R 472759 CDS YP_003527535.1 292492096 8917034 complement(2115650..2116366) 1 NC_013960.1 KEGG: noc:Noc_2149 hypothetical protein; hypothetical protein 2116366 8917034 Nhal_2041 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527535.1 2115650 R 472759 CDS YP_003527536.1 292492097 8917035 2116463..2117332 1 NC_013960.1 KEGG: noc:Noc_2150 hypothetical protein; hypothetical protein 2117332 8917035 Nhal_2042 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527536.1 2116463 D 472759 CDS YP_003527537.1 292492098 8917036 2117382..2117573 1 NC_013960.1 hypothetical protein 2117573 8917036 Nhal_2043 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527537.1 2117382 D 472759 CDS YP_003527538.1 292492099 8917038 2117957..2118148 1 NC_013960.1 hypothetical protein 2118148 8917038 Nhal_2045 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527538.1 2117957 D 472759 CDS YP_003527539.1 292492100 8917040 2118679..2118885 1 NC_013960.1 PFAM: protein of unknown function UPF0150; KEGG: ppd:Ppro_1149 hypothetical protein; hypothetical protein 2118885 8917040 Nhal_2047 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527539.1 2118679 D 472759 CDS YP_003527540.1 292492101 8917041 2118885..2119115 1 NC_013960.1 PFAM: YcfA family protein; KEGG: rpb:RPB_4579 YcfA-like; YcfA family protein 2119115 8917041 Nhal_2048 Nitrosococcus halophilus Nc4 YcfA family protein YP_003527540.1 2118885 D 472759 CDS YP_003527541.1 292492102 8917043 2119660..2120490 1 NC_013960.1 PFAM: protein of unknown function DUF1568; KEGG: tbd:Tbd_1967 hypothetical protein; hypothetical protein 2120490 8917043 Nhal_2050 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527541.1 2119660 D 472759 CDS YP_003527542.1 292492103 8917044 complement(2121254..2122303) 1 NC_013960.1 PFAM: glycosyl transferase group 1; KEGG: noc:Noc_1076 glycosyl transferase, group 1; group 1 glycosyl transferase 2122303 8917044 Nhal_2051 Nitrosococcus halophilus Nc4 group 1 glycosyl transferase YP_003527542.1 2121254 R 472759 CDS YP_003527543.1 292492104 8917045 complement(2122307..2122687) 1 NC_013960.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: noc:Noc_1077 6-pyruvoyl tetrahydropterin synthase; hypothetical protein 2122687 8917045 Nhal_2052 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527543.1 2122307 R 472759 CDS YP_003527544.1 292492105 8917046 complement(2122703..2123734) 1 NC_013960.1 KEGG: noc:Noc_1078 dehydrogenase; dehydrogenase 2123734 8917046 Nhal_2053 Nitrosococcus halophilus Nc4 dehydrogenase YP_003527544.1 2122703 R 472759 CDS YP_003527545.1 292492106 8917047 complement(2123710..2124804) 1 NC_013960.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: noc:Noc_1079 bifunctional deaminase-reductase-like; bifunctional deaminase-reductase domain-containing protein 2124804 8917047 Nhal_2054 Nitrosococcus halophilus Nc4 bifunctional deaminase-reductase domain-containing protein YP_003527545.1 2123710 R 472759 CDS YP_003527546.1 292492107 8917048 2124853..2125602 1 NC_013960.1 KEGG: noc:Noc_1080 hypothetical protein; hypothetical protein 2125602 8917048 Nhal_2055 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527546.1 2124853 D 472759 CDS YP_003527547.1 292492108 8917049 2125613..2126263 1 NC_013960.1 KEGG: noc:Noc_1081 S-isoprenylcysteine methyltransferase-like protein; S-isoprenylcysteine methyltransferase-like protein 2126263 8917049 Nhal_2056 Nitrosococcus halophilus Nc4 S-isoprenylcysteine methyltransferase-like protein YP_003527547.1 2125613 D 472759 CDS YP_003527548.1 292492109 8917050 2126388..2126975 1 NC_013960.1 PFAM: protein of unknown function DUF785; KEGG: noc:Noc_1082 hypothetical protein; hypothetical protein 2126975 8917050 Nhal_2057 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527548.1 2126388 D 472759 CDS YP_003527549.1 292492110 8917051 2127017..2128561 1 NC_013960.1 KEGG: noc:Noc_1083 hypothetical protein; hypothetical protein 2128561 8917051 Nhal_2058 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527549.1 2127017 D 472759 CDS YP_003527550.1 292492111 8917052 2128558..2129499 1 NC_013960.1 TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: noc:Noc_1084 alpha-L-glutamate ligase-related protein; alpha-L-glutamate ligase-like protein 2129499 8917052 Nhal_2059 Nitrosococcus halophilus Nc4 alpha-L-glutamate ligase-like protein YP_003527550.1 2128558 D 472759 CDS YP_003527551.1 292492112 8917053 complement(2129509..2130813) 1 NC_013960.1 PFAM: amino acid permease-associated region; KEGG: pca:Pcar_0190 amino acid/amine transporter; amino acid permease-associated protein 2130813 8917053 Nhal_2060 Nitrosococcus halophilus Nc4 amino acid permease-associated protein YP_003527551.1 2129509 R 472759 CDS YP_003527552.1 292492113 8917054 complement(2130840..2131424) 1 NC_013960.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: uracil-DNA glycosylase superfamily; KEGG: noc:Noc_1085 phage SPO1 DNA polymerase-related protein; phage SPO1 DNA polymerase-like protein 2131424 8917054 Nhal_2061 Nitrosococcus halophilus Nc4 phage SPO1 DNA polymerase-like protein YP_003527552.1 2130840 R 472759 CDS YP_003527553.1 292492114 8917055 complement(2131546..2132031) 1 NC_013960.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: noc:Noc_1086 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 2132031 8917055 Nhal_2062 Nitrosococcus halophilus Nc4 FKBP-type peptidylprolyl isomerase YP_003527553.1 2131546 R 472759 CDS YP_003527554.1 292492115 8917056 2132339..2132827 1 NC_013960.1 KEGG: nmu:Nmul_A0896 hypothetical protein; hypothetical protein 2132827 8917056 Nhal_2063 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527554.1 2132339 D 472759 CDS YP_003527555.1 292492116 8917057 2132888..2134000 1 NC_013960.1 PFAM: peptidase M42 family protein; KEGG: noc:Noc_1087 peptidase M42; peptidase M42 family protein 2134000 8917057 Nhal_2064 Nitrosococcus halophilus Nc4 peptidase M42 family protein YP_003527555.1 2132888 D 472759 CDS YP_003527556.1 292492117 8917058 2134042..2134626 1 NC_013960.1 PFAM: ferritin; KEGG: sfu:Sfum_1965 ferritin, Dps family protein; ferroxidase 2134626 8917058 Nhal_2065 Nitrosococcus halophilus Nc4 ferroxidase YP_003527556.1 2134042 D 472759 CDS YP_003527557.1 292492118 8917059 complement(2134682..2135284) 1 NC_013960.1 PFAM: MarR family transcriptional regulator; SMART: MarR family transcriptional regulator; KEGG: noc:Noc_1088 MarR family transcriptional regulator; MarR family transcriptional regulator 2135284 8917059 Nhal_2066 Nitrosococcus halophilus Nc4 MarR family transcriptional regulator YP_003527557.1 2134682 R 472759 CDS YP_003527558.1 292492119 8917060 2135312..2135902 1 NC_013960.1 KEGG: mca:MCA2394 cytochrome C'; cytochrome C' 2135902 8917060 Nhal_2067 Nitrosococcus halophilus Nc4 cytochrome C' YP_003527558.1 2135312 D 472759 CDS YP_003527559.1 292492120 8917061 2136010..2136600 1 NC_013960.1 KEGG: noc:Noc_1089 hypothetical protein; hypothetical protein 2136600 8917061 Nhal_2068 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527559.1 2136010 D 472759 CDS YP_003527560.1 292492121 8917062 2136968..2137381 1 NC_013960.1 TIGRFAM: nitrosocyanin; KEGG: nmu:Nmul_A1601 chain A, red copper protein nitrosocyanin; nitrosocyanin 2137381 8917062 Nhal_2069 Nitrosococcus halophilus Nc4 nitrosocyanin YP_003527560.1 2136968 D 472759 CDS YP_003527561.1 292492122 8917063 complement(2137488..2140379) 1 NC_013960.1 TIGRFAM: valyl-tRNA synthetase; KEGG: noc:Noc_1091 valyl-tRNA synthetase; valyl-tRNA synthetase 2140379 8917063 Nhal_2070 Nitrosococcus halophilus Nc4 valyl-tRNA synthetase YP_003527561.1 2137488 R 472759 CDS YP_003527562.1 292492123 8917064 complement(2140744..2141364) 1 NC_013960.1 PFAM: protein of unknown function DUF374; KEGG: lip:LI0870 hypothetical protein; hypothetical protein 2141364 8917064 Nhal_2071 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527562.1 2140744 R 472759 CDS YP_003527563.1 292492124 8917066 complement(2141608..2142276) 1 NC_013960.1 PFAM: protein of unknown function DUF159; KEGG: noc:Noc_1737 hypothetical protein; hypothetical protein 2142276 8917066 Nhal_2073 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527563.1 2141608 R 472759 CDS YP_003527564.1 292492125 8917067 complement(2142276..2144462) 1 NC_013960.1 KEGG: noc:Noc_1736 hypothetical protein; hypothetical protein 2144462 8917067 Nhal_2074 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527564.1 2142276 R 472759 CDS YP_003527565.1 292492126 8917068 2144690..2146966 1 NC_013960.1 PFAM: protein of unknown function DUF1974; acyl-CoA dehydrogenase domain protein; KEGG: noc:Noc_1735 acyl-CoA dehydrogenase; hypothetical protein 2146966 8917068 Nhal_2075 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527565.1 2144690 D 472759 CDS YP_003527566.1 292492127 8917069 2147069..2148361 1 NC_013960.1 KEGG: noc:Noc_1734 3-ketoacyl-CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase; acetyl-CoA acetyltransferase 2148361 8917069 Nhal_2076 Nitrosococcus halophilus Nc4 acetyl-CoA acetyltransferase YP_003527566.1 2147069 D 472759 CDS YP_003527567.1 292492128 8917070 2148358..2150598 1 NC_013960.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: noc:Noc_1733 multifunctional fatty acid oxidation complex subunit alpha; 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein 2150598 8917070 Nhal_2077 Nitrosococcus halophilus Nc4 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein YP_003527567.1 2148358 D 472759 CDS YP_003527568.1 292492129 8917071 complement(2150612..2151781) 1 NC_013960.1 PFAM: cytochrome B561; KEGG: noc:Noc_1732 cytochrome b561; cytochrome B561 2151781 8917071 Nhal_2078 Nitrosococcus halophilus Nc4 cytochrome B561 YP_003527568.1 2150612 R 472759 CDS YP_003527569.1 292492130 8917072 2151859..2152104 1 NC_013960.1 hypothetical protein 2152104 8917072 Nhal_2079 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527569.1 2151859 D 472759 CDS YP_003527570.1 292492131 8917075 2153891..2155033 1 NC_013960.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: pin:Ping_3063 transposase, IS605 OrfB family protein; transposase, IS605 OrfB family 2155033 8917075 Nhal_2082 Nitrosococcus halophilus Nc4 transposase, IS605 OrfB family YP_003527570.1 2153891 D 472759 CDS YP_003527571.1 292492132 8917076 2156016..2156588 1 NC_013960.1 KEGG: noc:Noc_1731 hypothetical protein; hypothetical protein 2156588 8917076 Nhal_2083 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527571.1 2156016 D 472759 CDS YP_003527572.1 292492133 8917079 2157164..2159308 1 NC_013960.1 PFAM: organic solvent tolerance protein; OstA family protein; KEGG: noc:Noc_1724 organic solvent tolerance protein; organic solvent tolerance protein 2159308 8917079 Nhal_2084 Nitrosococcus halophilus Nc4 organic solvent tolerance protein YP_003527572.1 2157164 D 472759 CDS YP_003527573.1 292492134 8917080 2159385..2160662 1 NC_013960.1 PFAM: SurA domain; PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: noc:Noc_1723 PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain-containing protein 2160662 8917080 Nhal_2085 Nitrosococcus halophilus Nc4 SurA domain-containing protein YP_003527573.1 2159385 D 472759 CDS YP_003527574.1 292492135 8917081 2160681..2161664 1 NC_013960.1 KEGG: noc:Noc_1722 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 2161664 8917081 Nhal_2086 Nitrosococcus halophilus Nc4 4-hydroxythreonine-4-phosphate dehydrogenase YP_003527574.1 2160681 D 472759 CDS YP_003527575.1 292492136 8917082 2161661..2162458 1 NC_013960.1 KEGG: noc:Noc_1721 16S rRNA dimethylase; TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: ribosomal RNA adenine methylase transferase; dimethyladenosine transferase 2162458 8917082 Nhal_2087 Nitrosococcus halophilus Nc4 dimethyladenosine transferase YP_003527575.1 2161661 D 472759 CDS YP_003527576.1 292492137 8917083 complement(2162465..2163055) 1 NC_013960.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: noc:Noc_1720 Maf-like protein; maf protein 2163055 8917083 Nhal_2088 Nitrosococcus halophilus Nc4 maf protein YP_003527576.1 2162465 R 472759 CDS YP_003527577.1 292492138 8917084 complement(2163052..2164878) 1 NC_013960.1 TIGRFAM: oxaloacetate decarboxylase subunit alpha; PFAM: Conserved carboxylase region; pyruvate carboxyltransferase; biotin/lipoyl attachment domain-containing protein; KEGG: pen:PSEEN5495 pyruvate carboxylase subunit B; oxaloacetate decarboxylase subunit alpha 2164878 8917084 Nhal_2089 Nitrosococcus halophilus Nc4 oxaloacetate decarboxylase subunit alpha YP_003527577.1 2163052 R 472759 CDS YP_003527578.1 292492139 8917085 complement(2164907..2166325) 1 NC_013960.1 PFAM: carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; carbamoyl-phosphate synthetase large chain domain protein; KEGG: tgr:Tgr7_1915 acetyl-CoA carboxylase, biotin carboxylase; carbamoyl-phosphate synthase L chain ATP-binding protein 2166325 8917085 Nhal_2090 Nitrosococcus halophilus Nc4 carbamoyl-phosphate synthase L chain ATP-binding protein YP_003527578.1 2164907 R 472759 CDS YP_003527579.1 292492140 8917086 complement(2166367..2168001) 1 NC_013960.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: noc:Noc_1719 phosphoglucomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I 2168001 8917086 Nhal_2091 Nitrosococcus halophilus Nc4 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I YP_003527579.1 2166367 R 472759 CDS YP_003527580.1 292492141 8917087 2168180..2170078 1 NC_013960.1 PFAM: heat shock protein Hsp90; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: noc:Noc_1718 heat shock protein 90; heat shock protein Hsp90 2170078 8917087 Nhal_2092 Nitrosococcus halophilus Nc4 heat shock protein Hsp90 YP_003527580.1 2168180 D 472759 CDS YP_003527581.1 292492142 8917088 2170161..2170778 1 NC_013960.1 PFAM: response regulator receiver; LuxR family transcriptional regulator; Sigma-70 region 4 type 2; SMART: response regulator receiver; LuxR family transcriptional regulator; KEGG: noc:Noc_1717 two component LuxR family transcriptional regulator; response regulator receiver 2170778 8917088 Nhal_2093 Nitrosococcus halophilus Nc4 response regulator receiver YP_003527581.1 2170161 D 472759 CDS YP_003527582.1 292492143 8917089 2171010..2171315 1 NC_013960.1 KEGG: noc:Noc_1602 hypothetical protein; hypothetical protein 2171315 8917089 Nhal_2094 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527582.1 2171010 D 472759 CDS YP_003527583.1 292492144 8917090 complement(2171379..2171789) 1 NC_013960.1 TIGRFAM: Rrf2 family transcriptional regulator; PFAM: protein of unknown function UPF0074; KEGG: noc:Noc_1716 hypothetical protein; Rrf2 family transcriptional regulator 2171789 8917090 Nhal_2095 Nitrosococcus halophilus Nc4 Rrf2 family transcriptional regulator YP_003527583.1 2171379 R 472759 CDS YP_003527584.1 292492145 8917091 2171914..2173044 1 NC_013960.1 PFAM: protein of unknown function DUF482; KEGG: noc:Noc_1715 hypothetical protein; hypothetical protein 2173044 8917091 Nhal_2096 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527584.1 2171914 D 472759 CDS YP_003527585.1 292492146 8917092 2173143..2173781 1 NC_013960.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: noc:Noc_1714 ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG family protein 2173781 8917092 Nhal_2097 Nitrosococcus halophilus Nc4 ErfK/YbiS/YcfS/YnhG family protein YP_003527585.1 2173143 D 472759 CDS YP_003527586.1 292492147 8917093 2173812..2174450 1 NC_013960.1 PFAM: beta-lactamase; KEGG: noc:Noc_1713 metallo-beta-lactamase family protein; beta-lactamase 2174450 8917093 Nhal_2098 Nitrosococcus halophilus Nc4 beta-lactamase YP_003527586.1 2173812 D 472759 CDS YP_003527587.1 292492148 8917094 complement(2174464..2174868) 1 NC_013960.1 hypothetical protein 2174868 8917094 Nhal_2099 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527587.1 2174464 R 472759 CDS YP_003527588.1 292492149 8917095 complement(2174982..2175083) 1 NC_013960.1 hypothetical protein 2175083 8917095 Nhal_2100 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527588.1 2174982 R 472759 CDS YP_003527589.1 292492150 8917096 2175414..2175632 1 NC_013960.1 KEGG: hch:HCH_03920 hypothetical protein; hypothetical protein 2175632 8917096 Nhal_2101 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527589.1 2175414 D 472759 CDS YP_003527590.1 292492151 8917097 2175683..2177224 1 NC_013960.1 KEGG: scl:sce3895 hypothetical protein; phosphodiesterase/alkaline phosphatase D-like protein 2177224 8917097 Nhal_2102 Nitrosococcus halophilus Nc4 phosphodiesterase/alkaline phosphatase D-like protein YP_003527590.1 2175683 D 472759 CDS YP_003527591.1 292492152 8917098 complement(2177251..2177628) 1 NC_013960.1 PFAM: thiol-disulphide oxidoreductase DCC; KEGG: noc:Noc_1922 hypothetical protein; thiol-disulfide oxidoreductase DCC 2177628 8917098 Nhal_2103 Nitrosococcus halophilus Nc4 thiol-disulfide oxidoreductase DCC YP_003527591.1 2177251 R 472759 CDS YP_003527592.1 292492153 8917099 complement(2177632..2178231) 1 NC_013960.1 PFAM: protein of unknown function DUF1232; KEGG: noc:Noc_1921 hypothetical protein; hypothetical protein 2178231 8917099 Nhal_2104 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527592.1 2177632 R 472759 CDS YP_003527593.1 292492154 8917100 complement(2178254..2178697) 1 NC_013960.1 PFAM: isoprenylcysteine carboxyl methyltransferase; KEGG: noc:Noc_1112 hypothetical protein; isoprenylcysteine carboxyl methyltransferase 2178697 8917100 Nhal_2105 Nitrosococcus halophilus Nc4 isoprenylcysteine carboxyl methyltransferase YP_003527593.1 2178254 R 472759 CDS YP_003527594.1 292492155 8917101 2178754..2179461 1 NC_013960.1 PFAM: conserved hypothetical protein; KEGG: wsu:WS0656 hypothetical protein; hypothetical protein 2179461 8917101 Nhal_2106 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527594.1 2178754 D 472759 CDS YP_003527595.1 292492156 8917102 complement(2179445..2179822) 1 NC_013960.1 PFAM: protein of unknown function DUF454; KEGG: noc:Noc_1113 hypothetical protein; hypothetical protein 2179822 8917102 Nhal_2107 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527595.1 2179445 R 472759 CDS YP_003527596.1 292492157 8917103 2180138..2181442 1 NC_013960.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: noc:Noc_1114 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 2181442 8917103 Nhal_2108 Nitrosococcus halophilus Nc4 glycerophosphoryl diester phosphodiesterase YP_003527596.1 2180138 D 472759 CDS YP_003527597.1 292492158 8917104 complement(2181600..2182328) 1 NC_013960.1 PFAM: zinc/iron permease; KEGG: net:Neut_0463 zinc/iron permease; zinc/iron permease 2182328 8917104 Nhal_2109 Nitrosococcus halophilus Nc4 zinc/iron permease YP_003527597.1 2181600 R 472759 CDS YP_003527598.1 292492159 8917105 2183122..2184132 1 NC_013960.1 KEGG: tgr:Tgr7_0274 hypothetical protein; hypothetical protein 2184132 8917105 Nhal_2110 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527598.1 2183122 D 472759 CDS YP_003527599.1 292492160 8917106 2184101..2185483 1 NC_013960.1 hypothetical protein 2185483 8917106 Nhal_2111 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527599.1 2184101 D 472759 CDS YP_003527600.1 292492161 8917107 complement(2185666..2186028) 1 NC_013960.1 hypothetical protein 2186028 8917107 Nhal_2112 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527600.1 2185666 R 472759 CDS YP_003527601.1 292492162 8917108 2186331..2186840 1 NC_013960.1 KEGG: noc:Noc_2700 hypothetical protein; hypothetical protein 2186840 8917108 Nhal_2113 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527601.1 2186331 D 472759 CDS YP_003527602.1 292492163 8917109 2187229..2187738 1 NC_013960.1 KEGG: noc:Noc_2700 hypothetical protein; hypothetical protein 2187738 8917109 Nhal_2114 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527602.1 2187229 D 472759 CDS YP_003527603.1 292492164 8917110 complement(2187883..2188398) 1 NC_013960.1 PFAM: heat shock protein Hsp20; CS; KEGG: noc:Noc_1573 heat shock protein HSP20; heat shock protein Hsp20 2188398 8917110 Nhal_2115 Nitrosococcus halophilus Nc4 heat shock protein Hsp20 YP_003527603.1 2187883 R 472759 CDS YP_003527604.1 292492165 8917111 complement(2188548..2190146) 1 NC_013960.1 PFAM: FAD dependent oxidoreductase; KEGG: noc:Noc_2699 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2190146 8917111 Nhal_2116 Nitrosococcus halophilus Nc4 FAD dependent oxidoreductase YP_003527604.1 2188548 R 472759 CDS YP_003527605.1 292492166 8917112 complement(2190155..2191666) 1 NC_013960.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: noc:Noc_2698 glycerol kinase; glycerol kinase 2191666 8917112 Nhal_2117 Nitrosococcus halophilus Nc4 glycerol kinase YP_003527605.1 2190155 R 472759 CDS YP_003527606.1 292492167 8917113 2191754..2191921 1 NC_013960.1 hypothetical protein 2191921 8917113 Nhal_2118 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527606.1 2191754 D 472759 CDS YP_003527607.1 292492168 8917116 complement(2193662..2194186) 1 NC_013960.1 KEGG: noc:Noc_2696 hypothetical protein; hypothetical protein 2194186 8917116 Nhal_2121 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527607.1 2193662 R 472759 CDS YP_003527608.1 292492169 8917117 complement(2194493..2195059) 1 NC_013960.1 PFAM: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30; KEGG: noc:Noc_2695 hypothetical protein; NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 2195059 8917117 Nhal_2122 Nitrosococcus halophilus Nc4 NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 YP_003527608.1 2194493 R 472759 CDS YP_003527609.1 292492170 8917118 2195110..2195307 1 NC_013960.1 KEGG: noc:Noc_2694 hypothetical protein; hypothetical protein 2195307 8917118 Nhal_2123 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527609.1 2195110 D 472759 CDS YP_003527610.1 292492171 8917119 complement(2195326..2196144) 1 NC_013960.1 PFAM: glycosyl transferase family 2; KEGG: noc:Noc_0588 glycosyl transferase; family 2 glycosyl transferase 2196144 8917119 Nhal_2124 Nitrosococcus halophilus Nc4 family 2 glycosyl transferase YP_003527610.1 2195326 R 472759 CDS YP_003527611.1 292492172 8917120 complement(2196149..2198287) 1 NC_013960.1 KEGG: msl:Msil_0816 hypothetical protein; hypothetical protein 2198287 8917120 Nhal_2125 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527611.1 2196149 R 472759 CDS YP_003527612.1 292492173 8917121 2198383..2200845 1 NC_013960.1 PFAM: glycoside hydrolase family 31; KEGG: scl:sce3449 alpha-glucosidase family protein; alpha-glucosidase 2200845 8917121 Nhal_2126 Nitrosococcus halophilus Nc4 alpha-glucosidase YP_003527612.1 2198383 D 472759 CDS YP_003527613.1 292492174 8917122 2200854..2202116 1 NC_013960.1 KEGG: noc:Noc_2693 hypothetical protein; hypothetical protein 2202116 8917122 Nhal_2127 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527613.1 2200854 D 472759 CDS YP_003527614.1 292492175 8917123 2202380..2204917 1 NC_013960.1 KEGG: gme:Gmet_3085 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold domain protein; hypothetical protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein; diguanylate cyclase 2204917 8917123 Nhal_2128 Nitrosococcus halophilus Nc4 diguanylate cyclase YP_003527614.1 2202380 D 472759 CDS YP_003527615.1 292492176 8917124 complement(2204994..2206430) 1 NC_013960.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1115 proton-translocating NADH-quinone oxidoreductase, chain N; proton-translocating NADH-quinone oxidoreductase subunit N 2206430 8917124 Nhal_2129 Nitrosococcus halophilus Nc4 proton-translocating NADH-quinone oxidoreductase subunit N YP_003527615.1 2204994 R 472759 CDS YP_003527616.1 292492177 8917125 complement(2206434..2207930) 1 NC_013960.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1116 proton-translocating NADH-quinone oxidoreductase, chain M; proton-translocating NADH-quinone oxidoreductase subunit M 2207930 8917125 Nhal_2130 Nitrosococcus halophilus Nc4 proton-translocating NADH-quinone oxidoreductase subunit M YP_003527616.1 2206434 R 472759 CDS YP_003527617.1 292492178 8917126 complement(2207927..2209900) 1 NC_013960.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; KEGG: noc:Noc_1117 NADH-plastoquinone oxidoreductase, chain 5; proton-translocating NADH-quinone oxidoreductase subunit L 2209900 8917126 Nhal_2131 Nitrosococcus halophilus Nc4 proton-translocating NADH-quinone oxidoreductase subunit L YP_003527617.1 2207927 R 472759 CDS YP_003527618.1 292492179 8917127 complement(2209902..2210210) 1 NC_013960.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: noc:Noc_1118 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase chain 4L 2210210 8917127 Nhal_2132 Nitrosococcus halophilus Nc4 NADH-ubiquinone oxidoreductase chain 4L YP_003527618.1 2209902 R 472759 CDS YP_003527619.1 292492180 8917128 complement(2210210..2210713) 1 NC_013960.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: noc:Noc_1119 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 2210713 8917128 Nhal_2133 Nitrosococcus halophilus Nc4 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_003527619.1 2210210 R 472759 CDS YP_003527620.1 292492181 8917129 complement(2210824..2211366) 1 NC_013960.1 TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: noc:Noc_1120 NADH dehydrogenase subunit I; NADH-quinone oxidoreductase subunit I 2211366 8917129 Nhal_2134 Nitrosococcus halophilus Nc4 NADH-quinone oxidoreductase subunit I YP_003527620.1 2210824 R 472759 CDS YP_003527621.1 292492182 8917130 complement(2211385..2212344) 1 NC_013960.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: noc:Noc_1121 NADH dehydrogenase subunit H; NADH dehydrogenase (quinone) 2212344 8917130 Nhal_2135 Nitrosococcus halophilus Nc4 NADH dehydrogenase (quinone) YP_003527621.1 2211385 R 472759 CDS YP_003527622.1 292492183 8917131 complement(2212341..2215052) 1 NC_013960.1 TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: molybdopterin oxidoreductase Fe4S4 region; ferredoxin; KEGG: noc:Noc_1122 NADH dehydrogenase subunit G; NADH-quinone oxidoreductase subunit G 2215052 8917131 Nhal_2136 Nitrosococcus halophilus Nc4 NADH-quinone oxidoreductase subunit G YP_003527622.1 2212341 R 472759 CDS YP_003527623.1 292492184 8917132 complement(2215052..2216344) 1 NC_013960.1 KEGG: noc:Noc_1123 NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH-quinone oxidoreductase subunit F 2216344 8917132 Nhal_2137 Nitrosococcus halophilus Nc4 NADH-quinone oxidoreductase subunit F YP_003527623.1 2215052 R 472759 CDS YP_003527624.1 292492185 8917133 complement(2216341..2216808) 1 NC_013960.1 TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: noc:Noc_1124 NADH dehydrogenase (ubiquinone), 24 kDa subunit; NADH-quinone oxidoreductase subunit E 2216808 8917133 Nhal_2138 Nitrosococcus halophilus Nc4 NADH-quinone oxidoreductase subunit E YP_003527624.1 2216341 R 472759 CDS YP_003527625.1 292492186 8917134 complement(2216808..2217110) 1 NC_013960.1 hypothetical protein 2217110 8917134 Nhal_2139 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527625.1 2216808 R 472759 CDS YP_003527626.1 292492187 8917135 complement(2217143..2218885) 1 NC_013960.1 TIGRFAM: NADH dehydrogenase I, D subunit; NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: noc:Noc_1125 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; NADH dehydrogenase I subunit D 2218885 8917135 Nhal_2140 Nitrosococcus halophilus Nc4 NADH dehydrogenase I subunit D YP_003527626.1 2217143 R 472759 CDS YP_003527627.1 292492188 8917136 complement(2218891..2219529) 1 NC_013960.1 KEGG: noc:Noc_1126 NADH dehydrogenase subunit B; TIGRFAM: NADH-quinone oxidoreductase subunit beta; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; NADH-quinone oxidoreductase subunit beta 2219529 8917136 Nhal_2141 Nitrosococcus halophilus Nc4 NADH-quinone oxidoreductase subunit beta YP_003527627.1 2218891 R 472759 CDS YP_003527628.1 292492189 8917137 complement(2219534..2219938) 1 NC_013960.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: noc:Noc_1127 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 2219938 8917137 Nhal_2142 Nitrosococcus halophilus Nc4 NADH-ubiquinone/plastoquinone oxidoreductase chain 3 YP_003527628.1 2219534 R 472759 CDS YP_003527629.1 292492190 8917138 complement(2220058..2220285) 1 NC_013960.1 KEGG: bvi:Bcep1808_6189 hypothetical protein; hypothetical protein 2220285 8917138 Nhal_2143 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527629.1 2220058 R 472759 CDS YP_003527630.1 292492191 8917139 complement(2220304..2220777) 1 NC_013960.1 hypothetical protein 2220777 8917139 Nhal_2144 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527630.1 2220304 R 472759 CDS YP_003527631.1 292492192 8917140 2221001..2221729 1 NC_013960.1 KEGG: noc:Noc_1131 hypothetical protein; hypothetical protein 2221729 8917140 Nhal_2145 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527631.1 2221001 D 472759 CDS YP_003527632.1 292492193 8917141 2221786..2223150 1 NC_013960.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: hch:HCH_00693 cytochrome bd-type quinol oxidase subunit 1; cytochrome bd ubiquinol oxidase subunit I 2223150 8917141 Nhal_2146 Nitrosococcus halophilus Nc4 cytochrome bd ubiquinol oxidase subunit I YP_003527632.1 2221786 D 472759 CDS YP_003527633.1 292492194 8917142 2223169..2224167 1 NC_013960.1 TIGRFAM: cytochrome d ubiquinol oxidase subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: rpb:RPB_4671 cytochrome d ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase subunit II 2224167 8917142 Nhal_2147 Nitrosococcus halophilus Nc4 cytochrome d ubiquinol oxidase subunit II YP_003527633.1 2223169 D 472759 CDS YP_003527634.1 292492195 8917143 2224187..2225239 1 NC_013960.1 KEGG: pca:Pcar_2495 RNA 3'-terminal-phosphate cyclase; TIGRFAM: RNA 3'-phosphate cyclase; PFAM: RNA 3'-terminal phosphate cyclase; RNA 3'-terminal phosphate cyclase insert region; RNA 3'-phosphate cyclase 2225239 8917143 Nhal_2148 Nitrosococcus halophilus Nc4 RNA 3'-phosphate cyclase YP_003527634.1 2224187 D 472759 CDS YP_003527635.1 292492196 8917144 complement(2225259..2225519) 1 NC_013960.1 PFAM: protein of unknown function DUF504; KEGG: pca:Pcar_0300 hypothetical protein; hypothetical protein 2225519 8917144 Nhal_2149 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527635.1 2225259 R 472759 CDS YP_003527636.1 292492197 8917145 2225568..2226236 1 NC_013960.1 KEGG: Os08g0300000; hypothetical protein; hypothetical protein 2226236 8917145 Nhal_2150 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527636.1 2225568 D 472759 CDS YP_003527637.1 292492198 8917146 complement(2226255..2226584) 1 NC_013960.1 KEGG: mxa:MXAN_7103 CheR methyltransferase SAM-binding domain-containing protein; hypothetical protein 2226584 8917146 Nhal_2151 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527637.1 2226255 R 472759 CDS YP_003527638.1 292492199 8917147 2226957..2228060 1 NC_013960.1 KEGG: sfu:Sfum_2648 pyruvate dehydrogenase (acetyl-transferring); TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, subunit alpha; PFAM: dehydrogenase E1 component; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 2228060 8917147 Nhal_2152 Nitrosococcus halophilus Nc4 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha YP_003527638.1 2226957 D 472759 CDS YP_003527639.1 292492200 8917148 2228053..2229033 1 NC_013960.1 PFAM: transketolase; transketolase domain protein; KEGG: sfu:Sfum_2647 transketolase, central region; transketolase 2229033 8917148 Nhal_2153 Nitrosococcus halophilus Nc4 transketolase YP_003527639.1 2228053 D 472759 CDS YP_003527640.1 292492201 8917149 2229046..2230335 1 NC_013960.1 PFAM: dehydrogenase; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: sfu:Sfum_2646 dehydrogenase; dehydrogenase 2230335 8917149 Nhal_2154 Nitrosococcus halophilus Nc4 dehydrogenase YP_003527640.1 2229046 D 472759 CDS YP_003527641.1 292492202 8917150 complement(2230390..2231310) 1 NC_013960.1 PFAM: carbonic anhydrase; KEGG: noc:Noc_1132 carbonate dehydratase; carbonic anhydrase 2231310 8917150 Nhal_2155 Nitrosococcus halophilus Nc4 carbonic anhydrase YP_003527641.1 2230390 R 472759 CDS YP_003527642.1 292492203 8917151 complement(2231764..2232147) 1 NC_013960.1 KEGG: noc:Noc_1133 hypothetical protein; hypothetical protein 2232147 8917151 Nhal_2156 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527642.1 2231764 R 472759 CDS YP_003527643.1 292492204 8917152 2232273..2234291 1 NC_013960.1 TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: afw:Anae109_1015 copper-translocating P-type ATPase; ATPase P 2234291 8917152 Nhal_2157 Nitrosococcus halophilus Nc4 ATPase P YP_003527643.1 2232273 D 472759 CDS YP_003527644.1 292492205 8917153 2234331..2234945 1 NC_013960.1 PFAM: inorganic pyrophosphatase; KEGG: noc:Noc_1134 inorganic pyrophosphatase; inorganic diphosphatase 2234945 8917153 Nhal_2158 Nitrosococcus halophilus Nc4 inorganic diphosphatase YP_003527644.1 2234331 D 472759 CDS YP_003527645.1 292492206 8917154 2234977..2235480 1 NC_013960.1 hypothetical protein 2235480 8917154 Nhal_2159 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527645.1 2234977 D 472759 CDS YP_003527646.1 292492207 8917155 2235956..2236156 1 NC_013960.1 hypothetical protein 2236156 8917155 Nhal_2160 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527646.1 2235956 D 472759 CDS YP_003527647.1 292492208 8917157 2236928..2238073 1 NC_013960.1 PFAM: transposase IS4 family protein; KEGG: aby:ABAYE3624 IS4 family transposase; transposase IS4 family protein 2238073 8917157 Nhal_2162 Nitrosococcus halophilus Nc4 transposase IS4 family protein YP_003527647.1 2236928 D 472759 CDS YP_003527648.1 292492209 8917158 2238229..2239176 1 NC_013960.1 TIGRFAM: hydrolase, ortholog 1, exosortase system type 1 associated; KEGG: noc:Noc_1959 esterase/lipase/thioesterase family protein; hydrolase, exosortase system type 1 associated 2239176 8917158 Nhal_2163 Nitrosococcus halophilus Nc4 hydrolase, exosortase system type 1 associated YP_003527648.1 2238229 D 472759 CDS YP_003527649.1 292492210 8917159 2239158..2240411 1 NC_013960.1 KEGG: noc:Noc_1958 hypothetical protein; hypothetical protein 2240411 8917159 Nhal_2164 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527649.1 2239158 D 472759 CDS YP_003527650.1 292492211 8917160 complement(2240415..2241647) 1 NC_013960.1 TIGRFAM: pyridoxal-dependent decarboxylase, exosortase system type 1 associated; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: noc:Noc_1957 Orn/DAP/Arg decarboxylase 2; pyridoxal-dependent decarboxylase, exosortase system type 1 associated 2241647 8917160 Nhal_2165 Nitrosococcus halophilus Nc4 pyridoxal-dependent decarboxylase, exosortase system type 1 associated YP_003527650.1 2240415 R 472759 CDS YP_003527651.1 292492212 8917161 complement(2241644..2243257) 1 NC_013960.1 TIGRFAM: acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; PFAM: AMP-dependent synthetase and ligase; KEGG: noc:Noc_1956 AMP-dependent synthetase and ligase; acyl-CoA ligase (AMP-forming), exosortase system type 1 associated 2243257 8917161 Nhal_2166 Nitrosococcus halophilus Nc4 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated YP_003527651.1 2241644 R 472759 CDS YP_003527652.1 292492213 8917162 2243384..2244790 1 NC_013960.1 TIGRFAM: wzy family polymerase, exosortase system type 1 associated; KEGG: noc:Noc_1955 O-antigen polymerase; wzy family polymerase, exosortase system type 1 associated 2244790 8917162 Nhal_2167 Nitrosococcus halophilus Nc4 wzy family polymerase, exosortase system type 1 associated YP_003527652.1 2243384 D 472759 CDS YP_003527653.1 292492214 8917163 2244787..2245617 1 NC_013960.1 KEGG: noc:Noc_1954 hypothetical protein; hypothetical protein 2245617 8917163 Nhal_2168 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527653.1 2244787 D 472759 CDS YP_003527654.1 292492215 8917164 2245676..2247013 1 NC_013960.1 KEGG: noc:Noc_1953 hypothetical protein; hypothetical protein 2247013 8917164 Nhal_2169 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527654.1 2245676 D 472759 CDS YP_003527655.1 292492216 8917165 complement(2247038..2247862) 1 NC_013960.1 PFAM: protein of unknown function DUF1555; KEGG: noc:Noc_1952 hypothetical protein; hypothetical protein 2247862 8917165 Nhal_2170 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527655.1 2247038 R 472759 CDS YP_003527656.1 292492217 8917166 2248222..2249580 1 NC_013960.1 PFAM: FAD linked oxidase; KEGG: noc:Noc_1951 FAD linked oxidase-like; FAD linked oxidase 2249580 8917166 Nhal_2171 Nitrosococcus halophilus Nc4 FAD linked oxidase YP_003527656.1 2248222 D 472759 CDS YP_003527657.1 292492218 8917167 2249577..2250317 1 NC_013960.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: noc:Noc_1950 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2250317 8917167 Nhal_2172 Nitrosococcus halophilus Nc4 short-chain dehydrogenase/reductase SDR YP_003527657.1 2249577 D 472759 CDS YP_003527658.1 292492219 8917168 2250317..2250946 1 NC_013960.1 TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase-like); KEGG: noc:Noc_1949 HAD family hydrolase; HAD-superfamily hydrolase 2250946 8917168 Nhal_2173 Nitrosococcus halophilus Nc4 HAD-superfamily hydrolase YP_003527658.1 2250317 D 472759 CDS YP_003527659.1 292492220 8917169 2250943..2251815 1 NC_013960.1 PFAM: UbiA prenyltransferase; KEGG: noc:Noc_1948 UbiA prenyltransferase; UbiA prenyltransferase 2251815 8917169 Nhal_2174 Nitrosococcus halophilus Nc4 UbiA prenyltransferase YP_003527659.1 2250943 D 472759 CDS YP_003527660.1 292492221 8917170 2251826..2252773 1 NC_013960.1 PFAM: conserved hypothetical protein; KEGG: noc:Noc_1947 hypothetical protein; hypothetical protein 2252773 8917170 Nhal_2175 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527660.1 2251826 D 472759 CDS YP_003527661.1 292492222 8917171 2253090..2254850 1 NC_013960.1 KEGG: noc:Noc_1944 hypothetical protein; hypothetical protein 2254850 8917171 Nhal_2176 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527661.1 2253090 D 472759 CDS YP_003527662.1 292492223 8917172 complement(2254910..2256478) 1 NC_013960.1 KEGG: noc:Noc_1945 hypothetical protein; hypothetical protein 2256478 8917172 Nhal_2177 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527662.1 2254910 R 472759 CDS YP_003527663.1 292492224 8917174 2258159..2258404 1 NC_013960.1 KEGG: prw:PsycPRwf_1938 IS1 transposase; hypothetical protein 2258404 8917174 Nhal_2179 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527663.1 2258159 D 472759 CDS YP_003527664.1 292492225 8917175 2258397..2258876 1 NC_013960.1 PFAM: IS1 transposase; KEGG: vvy:VV0559 transposase B; IS1 transposase 2258876 8917175 Nhal_2180 Nitrosococcus halophilus Nc4 IS1 transposase YP_003527664.1 2258397 D 472759 CDS YP_003527665.1 292492226 8917176 complement(2258897..2259805) 1 NC_013960.1 KEGG: dal:Dalk_1094 hypothetical protein; hypothetical protein 2259805 8917176 Nhal_2181 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527665.1 2258897 R 472759 CDS YP_003527666.1 292492227 8917177 complement(2259842..2260039) 1 NC_013960.1 hypothetical protein 2260039 8917177 Nhal_2182 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527666.1 2259842 R 472759 CDS YP_003527667.1 292492228 8917180 join(2261487..2261975,2261975..2262556) 1 NC_013960.1 KEGG: mch:Mchl_5622 transposase and inactivated derivatives-like protein; hypothetical protein 2262556 8917180 Nhal_2185 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527667.1 2261487 D 472759 CDS YP_003527668.1 292492229 8917183 2263869..2265371 1 NC_013960.1 KEGG: noc:Noc_1943 hypothetical protein; hypothetical protein 2265371 8917183 Nhal_2188 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527668.1 2263869 D 472759 CDS YP_003527669.1 292492230 8917184 2265691..2266158 1 NC_013960.1 hypothetical protein 2266158 8917184 Nhal_2189 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527669.1 2265691 D 472759 CDS YP_003527670.1 292492231 8917185 2266130..2266792 1 NC_013960.1 hypothetical protein 2266792 8917185 Nhal_2190 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527670.1 2266130 D 472759 CDS YP_003527671.1 292492232 8917187 2267297..2267563 1 NC_013960.1 hypothetical protein 2267563 8917187 Nhal_2192 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527671.1 2267297 D 472759 CDS YP_003527672.1 292492233 8917188 2267611..2269047 1 NC_013960.1 PFAM: polysaccharide biosynthesis protein; KEGG: noc:Noc_1942 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 2269047 8917188 Nhal_2193 Nitrosococcus halophilus Nc4 polysaccharide biosynthesis protein YP_003527672.1 2267611 D 472759 CDS YP_003527673.1 292492234 8917189 2269207..2270787 1 NC_013960.1 KEGG: noc:Noc_1941 hypothetical protein; hypothetical protein 2270787 8917189 Nhal_2194 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527673.1 2269207 D 472759 CDS YP_003527674.1 292492235 8917190 2270794..2271921 1 NC_013960.1 KEGG: noc:Noc_1940 hypothetical protein; hypothetical protein 2271921 8917190 Nhal_2195 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527674.1 2270794 D 472759 CDS YP_003527675.1 292492236 8917191 2271974..2274172 1 NC_013960.1 KEGG: noc:Noc_1939 hypothetical protein; hypothetical protein 2274172 8917191 Nhal_2196 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527675.1 2271974 D 472759 CDS YP_003527676.1 292492237 8917192 2274185..2274421 1 NC_013960.1 hypothetical protein 2274421 8917192 Nhal_2197 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527676.1 2274185 D 472759 CDS YP_003527677.1 292492238 8917193 2274646..2275881 1 NC_013960.1 PFAM: VanZ family protein; KEGG: noc:Noc_1937 VanZ like protein; VanZ family protein 2275881 8917193 Nhal_2198 Nitrosococcus halophilus Nc4 VanZ family protein YP_003527677.1 2274646 D 472759 CDS YP_003527678.1 292492239 8917195 2277357..2278139 1 NC_013960.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: noc:Noc_1936 peptidase S1 and S6, chymotrypsin/Hap; peptidase S1 and S6 chymotrypsin/Hap 2278139 8917195 Nhal_2200 Nitrosococcus halophilus Nc4 peptidase S1 and S6 chymotrypsin/Hap YP_003527678.1 2277357 D 472759 CDS YP_003527679.1 292492240 8917196 complement(2278170..2279033) 1 NC_013960.1 TIGRFAM: RNA polymerase sigma factor RpoH; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: noc:Noc_1935 RpoH; RNA polymerase sigma factor RpoH 2279033 8917196 Nhal_2201 Nitrosococcus halophilus Nc4 RNA polymerase sigma factor RpoH YP_003527679.1 2278170 R 472759 CDS YP_003527680.1 292492241 8917197 complement(2279439..2280509) 1 NC_013960.1 KEGG: noc:Noc_1934 cell division transporter substrate-binding protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 2280509 8917197 Nhal_2202 Nitrosococcus halophilus Nc4 signal recognition particle-docking protein FtsY YP_003527680.1 2279439 R 472759 CDS YP_003527681.1 292492242 8917198 2280590..2281969 1 NC_013960.1 PFAM: peptidase M16 domain protein; KEGG: noc:Noc_1933 peptidase M16-like; peptidase M16 domain-containing protein 2281969 8917198 Nhal_2203 Nitrosococcus halophilus Nc4 peptidase M16 domain-containing protein YP_003527681.1 2280590 D 472759 CDS YP_003527682.1 292492243 8917199 2281959..2283263 1 NC_013960.1 PFAM: peptidase M16 domain protein; KEGG: noc:Noc_1932 peptidase M16-like; peptidase M16 domain-containing protein 2283263 8917199 Nhal_2204 Nitrosococcus halophilus Nc4 peptidase M16 domain-containing protein YP_003527682.1 2281959 D 472759 CDS YP_003527683.1 292492244 8917200 2283247..2283825 1 NC_013960.1 KEGG: noc:Noc_1931 hypothetical protein; TIGRFAM: methyltransferase; PFAM: protein of unknown function methylase; methyltransferase 2283825 8917200 Nhal_2205 Nitrosococcus halophilus Nc4 methyltransferase YP_003527683.1 2283247 D 472759 CDS YP_003527684.1 292492245 8917201 2283853..2284335 1 NC_013960.1 KEGG: noc:Noc_1930 coenzyme A biosynthesis protein; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase 2284335 8917201 Nhal_2206 Nitrosococcus halophilus Nc4 pantetheine-phosphate adenylyltransferase YP_003527684.1 2283853 D 472759 CDS YP_003527685.1 292492246 8917202 2284373..2284627 1 NC_013960.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: noc:Noc_1929 4Fe-4S ferredoxin iron-sulfur binding; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 2284627 8917202 Nhal_2207 Nitrosococcus halophilus Nc4 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003527685.1 2284373 D 472759 CDS YP_003527686.1 292492247 8917203 complement(2284704..2285567) 1 NC_013960.1 PFAM: aldo/keto reductase; KEGG: hypothetical protein; aldo/keto reductase 2285567 8917203 Nhal_2208 Nitrosococcus halophilus Nc4 aldo/keto reductase YP_003527686.1 2284704 R 472759 CDS YP_003527687.1 292492248 8917204 2286130..2286246 1 NC_013960.1 hypothetical protein 2286246 8917204 Nhal_2209 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527687.1 2286130 D 472759 CDS YP_003527688.1 292492249 8917205 2286546..2288273 1 NC_013960.1 KEGG: noc:Noc_0769 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 2288273 8917205 Nhal_2210 Nitrosococcus halophilus Nc4 gamma-glutamyltransferase YP_003527688.1 2286546 D 472759 CDS YP_003527689.1 292492250 8917206 complement(2288648..2289523) 1 NC_013960.1 PFAM: initiation factor 2B related; KEGG: sse:Ssed_2704 initiation factor 2B related; initiation factor 2B-like protein 2289523 8917206 Nhal_2211 Nitrosococcus halophilus Nc4 initiation factor 2B-like protein YP_003527689.1 2288648 R 472759 CDS YP_003527690.1 292492251 8917207 complement(2289520..2289945) 1 NC_013960.1 PFAM: NUDIX hydrolase; KEGG: hypothetical protein; NUDIX hydrolase 2289945 8917207 Nhal_2212 Nitrosococcus halophilus Nc4 NUDIX hydrolase YP_003527690.1 2289520 R 472759 CDS YP_003527691.1 292492252 8917208 complement(2289995..2292883) 1 NC_013960.1 PFAM: phosphoenolpyruvate carboxylase; KEGG: noc:Noc_0770 phosphoenolpyruvate carboxylase; phosphoenolpyruvate carboxylase 2292883 8917208 Nhal_2213 Nitrosococcus halophilus Nc4 phosphoenolpyruvate carboxylase YP_003527691.1 2289995 R 472759 CDS YP_003527692.1 292492253 8917209 complement(2293350..2294798) 1 NC_013960.1 TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1; KEGG: noc:Noc_0771 glycogen/starch synthase, ADP-glucose type; glycogen/starch synthase, ADP-glucose type 2294798 8917209 Nhal_2214 Nitrosococcus halophilus Nc4 glycogen/starch synthase, ADP-glucose type YP_003527692.1 2293350 R 472759 CDS YP_003527693.1 292492254 8917210 2295204..2296676 1 NC_013960.1 KEGG: noc:Noc_0772 glucose-6-phosphate 1-dehydrogenase; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; glucose-6-phosphate 1-dehydrogenase 2296676 8917210 Nhal_2215 Nitrosococcus halophilus Nc4 glucose-6-phosphate 1-dehydrogenase YP_003527693.1 2295204 D 472759 CDS YP_003527694.1 292492255 8917211 2296689..2297765 1 NC_013960.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; KEGG: noc:Noc_0773 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 2297765 8917211 Nhal_2216 Nitrosococcus halophilus Nc4 dTDP-glucose 4,6-dehydratase YP_003527694.1 2296689 D 472759 CDS YP_003527695.1 292492256 8917212 2297758..2298636 1 NC_013960.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase; KEGG: noc:Noc_0774 glucose-1-phosphate thymidylyltransferase, long form; glucose-1-phosphate thymidylyltransferase 2298636 8917212 Nhal_2217 Nitrosococcus halophilus Nc4 glucose-1-phosphate thymidylyltransferase YP_003527695.1 2297758 D 472759 CDS YP_003527696.1 292492257 8917213 2298643..2299188 1 NC_013960.1 KEGG: noc:Noc_0775 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 2299188 8917213 Nhal_2218 Nitrosococcus halophilus Nc4 dTDP-4-dehydrorhamnose 3,5-epimerase YP_003527696.1 2298643 D 472759 CDS YP_003527697.1 292492258 8917214 2299185..2300075 1 NC_013960.1 KEGG: noc:Noc_0776 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase 2300075 8917214 Nhal_2219 Nitrosococcus halophilus Nc4 dTDP-4-dehydrorhamnose reductase YP_003527697.1 2299185 D 472759 CDS YP_003527698.1 292492259 8917215 complement(2300086..2302098) 1 NC_013960.1 KEGG: noc:Noc_0777 asparagine synthase, glutamine-hydrolyzing; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II; asparagine synthase 2302098 8917215 Nhal_2220 Nitrosococcus halophilus Nc4 asparagine synthase YP_003527698.1 2300086 R 472759 CDS YP_003527699.1 292492260 8917216 complement(2302241..2303323) 1 NC_013960.1 PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; KEGG: noc:Noc_0778 aspartate/ornithine carbamoyltransferase; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain-containing protein 2303323 8917216 Nhal_2221 Nitrosococcus halophilus Nc4 aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain-containing protein YP_003527699.1 2302241 R 472759 CDS YP_003527700.1 292492261 8917217 complement(2303317..2303439) 1 NC_013960.1 hypothetical protein 2303439 8917217 Nhal_2222 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527700.1 2303317 R 472759 CDS YP_003527701.1 292492262 8917218 complement(2303433..2304881) 1 NC_013960.1 PFAM: Na+/solute symporter; KEGG: noc:Noc_0779 Na+/solute symporter; Na+/solute symporter 2304881 8917218 Nhal_2223 Nitrosococcus halophilus Nc4 Na+/solute symporter YP_003527701.1 2303433 R 472759 CDS YP_003527702.1 292492263 8917219 complement(2304878..2305609) 1 NC_013960.1 PFAM: isochorismatase hydrolase; KEGG: noc:Noc_0780 isochorismatase hydrolase; isochorismatase hydrolase 2305609 8917219 Nhal_2224 Nitrosococcus halophilus Nc4 isochorismatase hydrolase YP_003527702.1 2304878 R 472759 CDS YP_003527703.1 292492264 8917220 complement(2305628..2306866) 1 NC_013960.1 KEGG: noc:Noc_0781 allantoate amidohydrolase; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; peptidase dimerisation domain protein; hydantoinase/carbamoylase family amidase 2306866 8917220 Nhal_2225 Nitrosococcus halophilus Nc4 hydantoinase/carbamoylase family amidase YP_003527703.1 2305628 R 472759 CDS YP_003527704.1 292492265 8917221 complement(2306866..2307357) 1 NC_013960.1 KEGG: noc:Noc_0782 hypothetical protein; hypothetical protein 2307357 8917221 Nhal_2226 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527704.1 2306866 R 472759 CDS YP_003527705.1 292492266 8917222 2307493..2309085 1 NC_013960.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: noc:Noc_0783 signal transduction histidine kinase; ATP-binding region ATPase domain-containing protein 2309085 8917222 Nhal_2227 Nitrosococcus halophilus Nc4 ATP-binding region ATPase domain-containing protein YP_003527705.1 2307493 D 472759 CDS YP_003527706.1 292492267 8917223 2309082..2309783 1 NC_013960.1 KEGG: noc:Noc_0784 hypothetical protein; hypothetical protein 2309783 8917223 Nhal_2228 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527706.1 2309082 D 472759 CDS YP_003527707.1 292492268 8917224 2309776..2311137 1 NC_013960.1 PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: noc:Noc_0785 fis family two component transcriptional regulator; Fis family transcriptional regulator 2311137 8917224 Nhal_2229 Nitrosococcus halophilus Nc4 Fis family transcriptional regulator YP_003527707.1 2309776 D 472759 CDS YP_003527708.1 292492269 8917225 2311200..2311517 1 NC_013960.1 TIGRFAM: F1/F0 ATPase, Methanosarcina type, subunit 2; KEGG: mmw:Mmwyl1_1957 hypothetical protein; F1/F0 ATPase, Methanosarcina type subunit 2 2311517 8917225 Nhal_2230 Nitrosococcus halophilus Nc4 F1/F0 ATPase, Methanosarcina type subunit 2 YP_003527708.1 2311200 D 472759 CDS YP_003527709.1 292492270 8917226 2311579..2312106 1 NC_013960.1 KEGG: rpe:RPE_2066 protein of unknown function DUF1568; hypothetical protein 2312106 8917226 Nhal_2231 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527709.1 2311579 D 472759 CDS YP_003527710.1 292492271 8917227 2312110..2312205 1 NC_013960.1 hypothetical protein 2312205 8917227 Nhal_2232 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527710.1 2312110 D 472759 CDS YP_003527711.1 292492272 8917228 2312460..2313203 1 NC_013960.1 PFAM: protein of unknown function DUF1555; KEGG: nmu:Nmul_A1890 hypothetical protein; hypothetical protein 2313203 8917228 Nhal_2233 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527711.1 2312460 D 472759 CDS YP_003527712.1 292492273 8917229 complement(2313284..2315137) 1 NC_013960.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: noc:Noc_0787 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8 and S53 subtilisin kexin sedolisin 2315137 8917229 Nhal_2234 Nitrosococcus halophilus Nc4 peptidase S8 and S53 subtilisin kexin sedolisin YP_003527712.1 2313284 R 472759 CDS YP_003527713.1 292492274 8917230 complement(2315499..2316410) 1 NC_013960.1 KEGG: lpc:LPC_2226 ATP synthase subunit gamma C-terminus; ATP synthase subunit gamma C-terminus 2316410 8917230 Nhal_2235 Nitrosococcus halophilus Nc4 ATP synthase subunit gamma C-terminus YP_003527713.1 2315499 R 472759 CDS YP_003527714.1 292492275 8917231 complement(2316407..2317903) 1 NC_013960.1 KEGG: mca:MCA2707 F0F1 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1 subunit alpha; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; ATP synthase F1 subunit alpha 2317903 8917231 Nhal_2236 Nitrosococcus halophilus Nc4 ATP synthase F1 subunit alpha YP_003527714.1 2316407 R 472759 CDS YP_003527715.1 292492276 8917232 complement(2317887..2318642) 1 NC_013960.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: mca:MCA2701 ATP synthase F1 subunit delta; H+transporting two-sector ATPase B/B' subunit 2318642 8917232 Nhal_2237 Nitrosococcus halophilus Nc4 H+transporting two-sector ATPase B/B' subunit YP_003527715.1 2317887 R 472759 CDS YP_003527716.1 292492277 8917233 complement(2318707..2318982) 1 NC_013960.1 TIGRFAM: ATP synthase F0 C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: lpc:LPC_2223 hypothetical protein; ATP synthase F0 subunit C 2318982 8917233 Nhal_2238 Nitrosococcus halophilus Nc4 ATP synthase F0 subunit C YP_003527716.1 2318707 R 472759 CDS YP_003527717.1 292492278 8917234 complement(2318986..2319678) 1 NC_013960.1 TIGRFAM: ATP synthase F0 subunit alpha; PFAM: H+transporting two-sector ATPase subunit alpha; KEGG: ppd:Ppro_0848 F0F1 ATP synthase subunit A; ATP synthase F0 subunit alpha 2319678 8917234 Nhal_2239 Nitrosococcus halophilus Nc4 ATP synthase F0 subunit alpha YP_003527717.1 2318986 R 472759 CDS YP_003527718.1 292492279 8917235 complement(2319682..2319957) 1 NC_013960.1 KEGG: ppd:Ppro_0849 ATP synthase protein I; ATP synthase protein I 2319957 8917235 Nhal_2240 Nitrosococcus halophilus Nc4 ATP synthase protein I YP_003527718.1 2319682 R 472759 CDS YP_003527719.1 292492280 8917236 complement(2319954..2320355) 1 NC_013960.1 PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: lpc:LPC_2220 hypothetical protein; H+transporting two-sector ATPase delta/subunit epsilon 2320355 8917236 Nhal_2241 Nitrosococcus halophilus Nc4 H+transporting two-sector ATPase delta/subunit epsilon YP_003527719.1 2319954 R 472759 CDS YP_003527720.1 292492281 8917237 complement(2320352..2321752) 1 NC_013960.1 KEGG: mca:MCA1556 F0F1 ATP synthase subunit beta; TIGRFAM: ATP synthase F1 subunit beta; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; ATP synthase F1 subunit beta 2321752 8917237 Nhal_2242 Nitrosococcus halophilus Nc4 ATP synthase F1 subunit beta YP_003527720.1 2320352 R 472759 CDS YP_003527721.1 292492282 8917238 2322178..2322372 1 NC_013960.1 KEGG: maq:Maqu_0849 hypothetical protein; hypothetical protein 2322372 8917238 Nhal_2243 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527721.1 2322178 D 472759 CDS YP_003527722.1 292492283 8917239 complement(2322502..2323050) 1 NC_013960.1 TIGRFAM: ribosomal subunit interface protein; PFAM: Cold-shock protein DNA-binding; KEGG: noc:Noc_2438 sigma 54 modulation protein/ribosomal protein S30EA; ribosomal subunit interface protein 2323050 8917239 Nhal_2244 Nitrosococcus halophilus Nc4 ribosomal subunit interface protein YP_003527722.1 2322502 R 472759 CDS YP_003527723.1 292492284 8917240 2323396..2323641 1 NC_013960.1 KEGG: tgr:Tgr7_1863 hypothetical protein; hypothetical protein 2323641 8917240 Nhal_2245 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527723.1 2323396 D 472759 CDS YP_003527724.1 292492285 8917241 complement(2324071..2324382) 1 NC_013960.1 KEGG: mca:MCA0564 hypothetical protein; hypothetical protein 2324382 8917241 Nhal_2246 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527724.1 2324071 R 472759 CDS YP_003527725.1 292492286 8917242 2324547..2324813 1 NC_013960.1 KEGG: afw:Anae109_1578 hypothetical protein; hypothetical protein 2324813 8917242 Nhal_2247 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527725.1 2324547 D 472759 CDS YP_003527726.1 292492287 8917243 2324864..2325100 1 NC_013960.1 PFAM: protein of unknown function DUF37; KEGG: noc:Noc_2437 hypothetical protein; hypothetical protein 2325100 8917243 Nhal_2248 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527726.1 2324864 D 472759 CDS YP_003527727.1 292492288 8917244 2325197..2325811 1 NC_013960.1 PFAM: MerR family transcriptional regulator; Resolvase domain; KEGG: xfm:Xfasm12_1564 hypothetical protein; MerR family transcriptional regulator 2325811 8917244 Nhal_2249 Nitrosococcus halophilus Nc4 MerR family transcriptional regulator YP_003527727.1 2325197 D 472759 CDS YP_003527728.1 292492289 8917245 2325789..2325926 1 NC_013960.1 KEGG: noc:Noc_0401 transposase; transposase 2325926 8917245 Nhal_2250 Nitrosococcus halophilus Nc4 transposase YP_003527728.1 2325789 D 472759 CDS YP_003527729.1 292492290 8917246 2325914..2326771 1 NC_013960.1 PFAM: peptidase M23; KEGG: noc:Noc_2436 peptidase M23B; peptidase M23 2326771 8917246 Nhal_2251 Nitrosococcus halophilus Nc4 peptidase M23 YP_003527729.1 2325914 D 472759 CDS YP_003527730.1 292492291 8917247 complement(2326857..2327321) 1 NC_013960.1 KEGG: noc:Noc_2435 hypothetical protein; hypothetical protein 2327321 8917247 Nhal_2252 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527730.1 2326857 R 472759 CDS YP_003527731.1 292492292 8917248 2327561..2328013 1 NC_013960.1 KEGG: TCHH; trichohyalin; hypothetical protein 2328013 8917248 Nhal_2253 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527731.1 2327561 D 472759 CDS YP_003527732.1 292492293 8917252 complement(2332017..2332739) 1 NC_013960.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sfr:Sfri_1813 ABC transporter; ABC transporter 2332739 8917252 Nhal_2257 Nitrosococcus halophilus Nc4 ABC transporter YP_003527732.1 2332017 R 472759 CDS YP_003527733.1 292492294 8917253 complement(2332739..2334022) 1 NC_013960.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: sat:SYN_00852 periplasmic component of efflux system; RND family efflux transporter MFP subunit 2334022 8917253 Nhal_2258 Nitrosococcus halophilus Nc4 RND family efflux transporter MFP subunit YP_003527733.1 2332739 R 472759 CDS YP_003527734.1 292492295 8917254 2334475..2335194 1 NC_013960.1 KEGG: noc:Noc_2433 hypothetical protein; hypothetical protein 2335194 8917254 Nhal_2259 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527734.1 2334475 D 472759 CDS YP_003527735.1 292492296 8917255 join(2335361..2335639,2335639..2336079) 1 NC_013960.1 hypothetical protein 2336079 8917255 Nhal_2260 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527735.1 2335361 D 472759 CDS YP_003527736.1 292492297 8917256 complement(2336318..2336497) 1 NC_013960.1 hypothetical protein 2336497 8917256 Nhal_2261 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527736.1 2336318 R 472759 CDS YP_003527737.1 292492298 8917257 2336934..2337305 1 NC_013960.1 PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: ecd:ECDH10B_1970 solute/DNA competence effector; ProQ activator of osmoprotectant transporter ProP 2337305 8917257 Nhal_2262 Nitrosococcus halophilus Nc4 ProQ activator of osmoprotectant transporter ProP YP_003527737.1 2336934 D 472759 CDS YP_003527738.1 292492299 8917258 complement(2337348..2337623) 1 NC_013960.1 PFAM: YcfA family protein; KEGG: plu:plu2950 hypothetical protein; YcfA family protein 2337623 8917258 Nhal_2263 Nitrosococcus halophilus Nc4 YcfA family protein YP_003527738.1 2337348 R 472759 CDS YP_003527739.1 292492300 8917259 complement(2337623..2337976) 1 NC_013960.1 KEGG: plu:plu2951 hypothetical protein; hypothetical protein 2337976 8917259 Nhal_2264 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527739.1 2337623 R 472759 CDS YP_003527740.1 292492301 8917260 2338466..2338882 1 NC_013960.1 KEGG: lpc:LPC_0212 hypothetical protein; hypothetical protein 2338882 8917260 Nhal_2265 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527740.1 2338466 D 472759 CDS YP_003527741.1 292492302 8917261 2339491..2340378 1 NC_013960.1 KEGG: noc:Noc_2050 hypothetical protein; hypothetical protein 2340378 8917261 Nhal_2266 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527741.1 2339491 D 472759 CDS YP_003527742.1 292492303 8917262 2340903..2341157 1 NC_013960.1 hypothetical protein 2341157 8917262 Nhal_2267 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527742.1 2340903 D 472759 CDS YP_003527743.1 292492304 8917264 2341478..2342458 1 NC_013960.1 PFAM: aminoglycoside phosphotransferase; KEGG: noc:Noc_2432 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 2342458 8917264 Nhal_2268 Nitrosococcus halophilus Nc4 aminoglycoside phosphotransferase YP_003527743.1 2341478 D 472759 CDS YP_003527744.1 292492305 8917265 2342455..2343147 1 NC_013960.1 PFAM: nucleotidyl transferase; KEGG: noc:Noc_2431 nucleotidyl transferase; nucleotidyl transferase 2343147 8917265 Nhal_2269 Nitrosococcus halophilus Nc4 nucleotidyl transferase YP_003527744.1 2342455 D 472759 CDS YP_003527745.1 292492306 8917266 complement(2343150..2344064) 1 NC_013960.1 KEGG: noc:Noc_2430 ornithine carbamoyltransferase; TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; ornithine carbamoyltransferase 2344064 8917266 Nhal_2270 Nitrosococcus halophilus Nc4 ornithine carbamoyltransferase YP_003527745.1 2343150 R 472759 CDS YP_003527746.1 292492307 8917267 complement(2344092..2345495) 1 NC_013960.1 TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: noc:Noc_2429 acetylornithine and succinylornithine aminotransferase; acetylornithine and succinylornithine aminotransferase 2345495 8917267 Nhal_2271 Nitrosococcus halophilus Nc4 acetylornithine and succinylornithine aminotransferase YP_003527746.1 2344092 R 472759 CDS YP_003527747.1 292492308 8917268 complement(2345653..2346234) 1 NC_013960.1 PFAM: manganese and iron superoxide dismutase; KEGG: noc:Noc_2428 superoxide dismutase; superoxide dismutase 2346234 8917268 Nhal_2272 Nitrosococcus halophilus Nc4 superoxide dismutase YP_003527747.1 2345653 R 472759 CDS YP_003527748.1 292492309 8917269 2346465..2346794 1 NC_013960.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: noc:Noc_2427 glutaredoxin-like protein; glutaredoxin-like protein 2346794 8917269 Nhal_2273 Nitrosococcus halophilus Nc4 glutaredoxin-like protein YP_003527748.1 2346465 D 472759 CDS YP_003527749.1 292492310 8917270 2346968..2347291 1 NC_013960.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: noc:Noc_2426 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS 2347291 8917270 Nhal_2274 Nitrosococcus halophilus Nc4 ATP-dependent Clp protease adaptor protein ClpS YP_003527749.1 2346968 D 472759 CDS YP_003527750.1 292492311 8917271 2347431..2349692 1 NC_013960.1 KEGG: noc:Noc_2425 ATP-dependent Clp protease; TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; ATPase AAA; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: ATPase AAA; ATP-dependent Clp protease ATP-binding subunit clpA 2349692 8917271 Nhal_2275 Nitrosococcus halophilus Nc4 ATP-dependent Clp protease ATP-binding subunit clpA YP_003527750.1 2347431 D 472759 CDS YP_003527751.1 292492312 8917272 2349820..2350311 1 NC_013960.1 PFAM: ferric-uptake regulator; KEGG: noc:Noc_2424 ferric-uptake regulator; ferric-uptake regulator 2350311 8917272 Nhal_2276 Nitrosococcus halophilus Nc4 ferric-uptake regulator YP_003527751.1 2349820 D 472759 CDS YP_003527752.1 292492313 8917273 2350367..2351257 1 NC_013960.1 PFAM: periplasmic solute binding protein; KEGG: noc:Noc_2423 periplasmic solute binding protein; periplasmic solute binding protein 2351257 8917273 Nhal_2277 Nitrosococcus halophilus Nc4 periplasmic solute binding protein YP_003527752.1 2350367 D 472759 CDS YP_003527753.1 292492314 8917274 2351254..2351991 1 NC_013960.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_2422 ABC transporter ATPase; ABC transporter 2351991 8917274 Nhal_2278 Nitrosococcus halophilus Nc4 ABC transporter YP_003527753.1 2351254 D 472759 CDS YP_003527754.1 292492315 8917275 2351992..2352837 1 NC_013960.1 PFAM: ABC transporter; transporter permease protein; KEGG: noc:Noc_2421 ABC Mn2+/Zn2+ transporterinner membrane subunit; ABC transporter 2352837 8917275 Nhal_2279 Nitrosococcus halophilus Nc4 ABC transporter YP_003527754.1 2351992 D 472759 CDS YP_003527755.1 292492316 8917276 2352879..2353325 1 NC_013960.1 PFAM: protein of unknown function DUF29; KEGG: msl:Msil_2916 protein of unknown function DUF29; hypothetical protein 2353325 8917276 Nhal_2280 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527755.1 2352879 D 472759 CDS YP_003527756.1 292492317 8917277 complement(2353348..2354058) 1 NC_013960.1 PFAM: ERCC4 domain protein; helix-hairpin-helix motif; SMART: DNA-binding protein; KEGG: tgr:Tgr7_2438 ERCC4 domain-containing protein; ERCC4 domain-containing protein 2354058 8917277 Nhal_2281 Nitrosococcus halophilus Nc4 ERCC4 domain-containing protein YP_003527756.1 2353348 R 472759 CDS YP_003527757.1 292492318 8917278 2354308..2354889 1 NC_013960.1 PFAM: NUDIX hydrolase; KEGG: noc:Noc_2420 ADP-ribose diphosphatase NudE; NUDIX hydrolase 2354889 8917278 Nhal_2282 Nitrosococcus halophilus Nc4 NUDIX hydrolase YP_003527757.1 2354308 D 472759 CDS YP_003527758.1 292492319 8917279 2354873..2355712 1 NC_013960.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: noc:Noc_2419 3(2),5 -bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase 2355712 8917279 Nhal_2283 Nitrosococcus halophilus Nc4 3'(2'),5'-bisphosphate nucleotidase YP_003527758.1 2354873 D 472759 CDS YP_003527759.1 292492320 8917280 2355853..2356062 1 NC_013960.1 hypothetical protein 2356062 8917280 Nhal_2284 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527759.1 2355853 D 472759 CDS YP_003527760.1 292492321 8917281 complement(2356025..2357413) 1 NC_013960.1 PFAM: phosphate-selective porin O and P; KEGG: noc:Noc_2418 phosphate-selective porin O and P; phosphate-selective porin O and P 2357413 8917281 Nhal_2285 Nitrosococcus halophilus Nc4 phosphate-selective porin O and P YP_003527760.1 2356025 R 472759 CDS YP_003527761.1 292492322 8917282 complement(2357750..2359222) 1 NC_013960.1 PFAM: phosphate-selective porin O and P; KEGG: noc:Noc_2417 phosphate-selective porin O and P; phosphate-selective porin O and P 2359222 8917282 Nhal_2286 Nitrosococcus halophilus Nc4 phosphate-selective porin O and P YP_003527761.1 2357750 R 472759 CDS YP_003527762.1 292492323 8917283 2359642..2360331 1 NC_013960.1 KEGG: noc:Noc_2401 phosphate regulon transcriptional regulatory protein PhoB; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; phosphate regulon transcriptional regulatory protein PhoB 2360331 8917283 Nhal_2287 Nitrosococcus halophilus Nc4 phosphate regulon transcriptional regulatory protein PhoB YP_003527762.1 2359642 D 472759 CDS YP_003527763.1 292492324 8917284 2360348..2361658 1 NC_013960.1 KEGG: noc:Noc_2400 signal transduction histidine kinase, PhoR; TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; phosphate regulon sensor kinase PhoR 2361658 8917284 Nhal_2288 Nitrosococcus halophilus Nc4 phosphate regulon sensor kinase PhoR YP_003527763.1 2360348 D 472759 CDS YP_003527764.1 292492325 8917285 2361830..2362810 1 NC_013960.1 TIGRFAM: phosphate binding protein; KEGG: noc:Noc_2399 phosphate binding protein; phosphate binding protein 2362810 8917285 Nhal_2289 Nitrosococcus halophilus Nc4 phosphate binding protein YP_003527764.1 2361830 D 472759 CDS YP_003527765.1 292492326 8917286 2362916..2365201 1 NC_013960.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: noc:Noc_2398 ABC transporter inner membrane subunit; binding-protein-dependent transporters inner membrane component 2365201 8917286 Nhal_2290 Nitrosococcus halophilus Nc4 binding-protein-dependent transporters inner membrane component YP_003527765.1 2362916 D 472759 CDS YP_003527766.1 292492327 8917287 2365241..2366893 1 NC_013960.1 TIGRFAM: phosphate ABC transporter inner membrane subunit PstA; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: noc:Noc_2397 ABC phosphate transporter inner membrane subunit; phosphate ABC transporter permease 2366893 8917287 Nhal_2291 Nitrosococcus halophilus Nc4 phosphate ABC transporter permease YP_003527766.1 2365241 D 472759 CDS YP_003527767.1 292492328 8917288 2366910..2367761 1 NC_013960.1 KEGG: noc:Noc_2396 ABC phosphate transporter ATPase subunit; TIGRFAM: phosphate ABC transporter ATPase; PFAM: ABC transporter related; SMART: ATPase AAA; phosphate ABC transporter ATPase 2367761 8917288 Nhal_2292 Nitrosococcus halophilus Nc4 phosphate ABC transporter ATPase YP_003527767.1 2366910 D 472759 CDS YP_003527768.1 292492329 8917289 2367798..2368511 1 NC_013960.1 TIGRFAM: phosphate transporter regulatory protein PhoU; PFAM: PhoU family protein; KEGG: noc:Noc_2395 phosphate transporter PhoU; phosphate transporter regulatory protein PhoU 2368511 8917289 Nhal_2293 Nitrosococcus halophilus Nc4 phosphate transporter regulatory protein PhoU YP_003527768.1 2367798 D 472759 CDS YP_003527769.1 292492330 8917290 2368637..2370145 1 NC_013960.1 PFAM: Ppx/GppA phosphatase; KEGG: noc:Noc_2394 exopolyphosphatase; guanosine-5'-triphosphate,3'-diphosphate diphosphatase 2370145 8917290 Nhal_2294 Nitrosococcus halophilus Nc4 guanosine-5'-triphosphate,3'-diphosphate diphosphatase YP_003527769.1 2368637 D 472759 CDS YP_003527770.1 292492331 8917291 2370148..2371113 1 NC_013960.1 PFAM: adenylate cyclase; KEGG: noc:Noc_2393 adenylate cyclase; adenylate cyclase 2371113 8917291 Nhal_2295 Nitrosococcus halophilus Nc4 adenylate cyclase YP_003527770.1 2370148 D 472759 CDS YP_003527771.1 292492332 8917292 2371758..2372003 1 NC_013960.1 PFAM: Domain of unknown function DUF1902; KEGG: tgr:Tgr7_1809 domain of unknown function DUF1902; hypothetical protein 2372003 8917292 Nhal_2296 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527771.1 2371758 D 472759 CDS YP_003527772.1 292492333 8917293 complement(2372594..2372695) 1 NC_013960.1 hypothetical protein 2372695 8917293 Nhal_2297 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527772.1 2372594 R 472759 CDS YP_003527773.1 292492334 8917294 2373692..2375932 1 NC_013960.1 KEGG: rso:RSc0831 hypothetical protein; hypothetical protein 2375932 8917294 Nhal_2298 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527773.1 2373692 D 472759 CDS YP_003527774.1 292492335 8917295 2375989..2376306 1 NC_013960.1 KEGG: sme:SMa1784 hypothetical protein; hypothetical protein 2376306 8917295 Nhal_2299 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527774.1 2375989 D 472759 CDS YP_003527775.1 292492336 8917296 2376396..2377013 1 NC_013960.1 KEGG: hap:HAPS_1905 phosphoglycolate phosphatase; hypothetical protein 2377013 8917296 Nhal_2300 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527775.1 2376396 D 472759 CDS YP_003527776.1 292492337 8917297 2377010..2377633 1 NC_013960.1 KEGG: hap:HAPS_1906 predicted amidophosphoribosyltransferase; amidophosphoribosyltransferase 2377633 8917297 Nhal_2301 Nitrosococcus halophilus Nc4 amidophosphoribosyltransferase YP_003527776.1 2377010 D 472759 CDS YP_003527777.1 292492338 8917298 2377633..2378607 1 NC_013960.1 PFAM: SMF family protein; KEGG: hap:HAPS_1907 Rossmann fold nucleotide-binding protein involved in DNA uptake; SMF family protein 2378607 8917298 Nhal_2302 Nitrosococcus halophilus Nc4 SMF family protein YP_003527777.1 2377633 D 472759 CDS YP_003527778.1 292492339 8917299 2378722..2378922 1 NC_013960.1 KEGG: afr:AFE_0072 hypothetical protein; hypothetical protein 2378922 8917299 Nhal_2303 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527778.1 2378722 D 472759 CDS YP_003527779.1 292492340 8917300 2378919..2379173 1 NC_013960.1 KEGG: rpb:RPB_2524 hypothetical protein; hypothetical protein 2379173 8917300 Nhal_2304 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527779.1 2378919 D 472759 CDS YP_003527780.1 292492341 8917301 2379327..2379653 1 NC_013960.1 KEGG: geo:Geob_2588 hypothetical protein; hypothetical protein 2379653 8917301 Nhal_2305 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527780.1 2379327 D 472759 CDS YP_003527781.1 292492342 8917302 2379723..2380229 1 NC_013960.1 hypothetical protein 2380229 8917302 Nhal_2306 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527781.1 2379723 D 472759 CDS YP_003527782.1 292492343 8917303 2380369..2381115 1 NC_013960.1 KEGG: gur:Gura_3509 methyltransferase type 11; type 11 methyltransferase 2381115 8917303 Nhal_2307 Nitrosococcus halophilus Nc4 type 11 methyltransferase YP_003527782.1 2380369 D 472759 CDS YP_003527783.1 292492344 8917304 2381337..2381915 1 NC_013960.1 PFAM: sigma-70 region 4 domain protein; KEGG: hdu:HD2030 hypothetical protein; sigma-70 region 4 domain-containing protein 2381915 8917304 Nhal_2308 Nitrosococcus halophilus Nc4 sigma-70 region 4 domain-containing protein YP_003527783.1 2381337 D 472759 CDS YP_003527784.1 292492345 8917305 2382004..2382252 1 NC_013960.1 hypothetical protein 2382252 8917305 Nhal_2309 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527784.1 2382004 D 472759 CDS YP_003527785.1 292492346 8917306 2382279..2382926 1 NC_013960.1 KEGG: hdu:HD2030 hypothetical protein; hypothetical protein 2382926 8917306 Nhal_2310 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527785.1 2382279 D 472759 CDS YP_003527786.1 292492347 8917307 complement(2383913..2385985) 1 NC_013960.1 PFAM: polyphosphate kinase; KEGG: noc:Noc_2388 polyphosphate kinase; polyphosphate kinase 2385985 8917307 Nhal_2311 Nitrosococcus halophilus Nc4 polyphosphate kinase YP_003527786.1 2383913 R 472759 CDS YP_003527787.1 292492348 8917308 complement(2386015..2386296) 1 NC_013960.1 PFAM: BolA family protein; KEGG: noc:Noc_2387 BolA-like protein; BolA family protein 2386296 8917308 Nhal_2312 Nitrosococcus halophilus Nc4 BolA family protein YP_003527787.1 2386015 R 472759 CDS YP_003527788.1 292492349 8917309 complement(2386293..2386592) 1 NC_013960.1 PFAM: YCII-related; KEGG: noc:Noc_2386 hypothetical protein; YCII-like protein 2386592 8917309 Nhal_2313 Nitrosococcus halophilus Nc4 YCII-like protein YP_003527788.1 2386293 R 472759 CDS YP_003527789.1 292492350 8917310 complement(2386595..2387209) 1 NC_013960.1 PFAM: Intracellular septation protein A; KEGG: noc:Noc_2385 intracellular septation protein A; Intracellular septation protein A 2387209 8917310 Nhal_2314 Nitrosococcus halophilus Nc4 Intracellular septation protein A YP_003527789.1 2386595 R 472759 CDS YP_003527790.1 292492351 8917311 2387284..2388120 1 NC_013960.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: noc:Noc_2384 PHP family metal-dependent phosphoesterase; PHP domain-containing protein 2388120 8917311 Nhal_2315 Nitrosococcus halophilus Nc4 PHP domain-containing protein YP_003527790.1 2387284 D 472759 CDS YP_003527791.1 292492352 8917312 2388139..2388768 1 NC_013960.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: noc:Noc_2383 translation factor, SUA5/YciO/YrdC/YwlC; Sua5/YciO/YrdC/YwlC family protein 2388768 8917312 Nhal_2316 Nitrosococcus halophilus Nc4 Sua5/YciO/YrdC/YwlC family protein YP_003527791.1 2388139 D 472759 CDS YP_003527792.1 292492353 8917313 2388834..2389559 1 NC_013960.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: noc:Noc_2382 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 2389559 8917313 Nhal_2317 Nitrosococcus halophilus Nc4 phospholipid/glycerol acyltransferase YP_003527792.1 2388834 D 472759 CDS YP_003527793.1 292492354 8917314 2389624..2392221 1 NC_013960.1 KEGG: noc:Noc_2381 ATP-dependent Clp protease; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA; ATPase AAA central domain protein; Torsin; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: ATPase AAA; ATP-dependent chaperone ClpB 2392221 8917314 Nhal_2318 Nitrosococcus halophilus Nc4 ATP-dependent chaperone ClpB YP_003527793.1 2389624 D 472759 CDS YP_003527794.1 292492355 8917315 complement(2392327..2392563) 1 NC_013960.1 TIGRFAM: FmdB family transcriptional regulator; KEGG: mca:MCA1259 hypothetical protein; FmdB family transcriptional regulator 2392563 8917315 Nhal_2319 Nitrosococcus halophilus Nc4 FmdB family transcriptional regulator YP_003527794.1 2392327 R 472759 CDS YP_003527795.1 292492356 8917316 complement(2392588..2393187) 1 NC_013960.1 PFAM: carbonic anhydrase; KEGG: plu:plu2248 hypothetical protein; carbonic anhydrase 2393187 8917316 Nhal_2320 Nitrosococcus halophilus Nc4 carbonic anhydrase YP_003527795.1 2392588 R 472759 CDS YP_003527796.1 292492357 8917317 complement(2393240..2395462) 1 NC_013960.1 PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: noc:Noc_2380 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 2395462 8917317 Nhal_2321 Nitrosococcus halophilus Nc4 AMP-dependent synthetase and ligase YP_003527796.1 2393240 R 472759 CDS YP_003527797.1 292492358 8917318 2395679..2396062 1 NC_013960.1 PFAM: invasion gene expression up-regulator SirB; KEGG: noc:Noc_2379 invasion gene expression up-regulator, SirB; invasion gene expression up-regulator SirB 2396062 8917318 Nhal_2322 Nitrosococcus halophilus Nc4 invasion gene expression up-regulator SirB YP_003527797.1 2395679 D 472759 CDS YP_003527798.1 292492359 8917319 complement(2396107..2396964) 1 NC_013960.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: tgr:Tgr7_1140 short-chain dehydrogenase/reductase; short-chain dehydrogenase/reductase SDR 2396964 8917319 Nhal_2323 Nitrosococcus halophilus Nc4 short-chain dehydrogenase/reductase SDR YP_003527798.1 2396107 R 472759 CDS YP_003527799.1 292492360 8917320 2397276..2397677 1 NC_013960.1 TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: noc:Noc_2378 flagellar basal-body rod protein FlgB; flagellar basal-body rod protein FlgB 2397677 8917320 Nhal_2324 Nitrosococcus halophilus Nc4 flagellar basal-body rod protein FlgB YP_003527799.1 2397276 D 472759 CDS YP_003527800.1 292492361 8917321 2397682..2398095 1 NC_013960.1 TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: noc:Noc_2377 flagellar basal-body rod protein FlgC; flagellar basal-body rod protein FlgC 2398095 8917321 Nhal_2325 Nitrosococcus halophilus Nc4 flagellar basal-body rod protein FlgC YP_003527800.1 2397682 D 472759 CDS YP_003527801.1 292492362 8917322 2398118..2398798 1 NC_013960.1 PFAM: flagellar hook capping protein; KEGG: noc:Noc_2376 flagellar hook capping protein; flagellar hook capping protein 2398798 8917322 Nhal_2326 Nitrosococcus halophilus Nc4 flagellar hook capping protein YP_003527801.1 2398118 D 472759 CDS YP_003527802.1 292492363 8917323 2398823..2400100 1 NC_013960.1 PFAM: flagellar basal body FlaE domain protein; flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: noc:Noc_2375 hypothetical protein; flagellar basal body FlaE domain-containing protein 2400100 8917323 Nhal_2327 Nitrosococcus halophilus Nc4 flagellar basal body FlaE domain-containing protein YP_003527802.1 2398823 D 472759 CDS YP_003527803.1 292492364 8917324 2400128..2400868 1 NC_013960.1 TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: protein of unknown function DUF1078 domain protein; KEGG: noc:Noc_2374 hypothetical protein; flagellar basal-body rod protein FlgF 2400868 8917324 Nhal_2328 Nitrosococcus halophilus Nc4 flagellar basal-body rod protein FlgF YP_003527803.1 2400128 D 472759 CDS YP_003527804.1 292492365 8917325 2400913..2401698 1 NC_013960.1 TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: noc:Noc_2373 hypothetical protein; flagellar basal-body rod protein FlgG 2401698 8917325 Nhal_2329 Nitrosococcus halophilus Nc4 flagellar basal-body rod protein FlgG YP_003527804.1 2400913 D 472759 CDS YP_003527805.1 292492366 8917326 2401815..2402612 1 NC_013960.1 PFAM: flagellar L-ring protein; KEGG: noc:Noc_2372 flagellar L-ring protein; flagellar L-ring protein 2402612 8917326 Nhal_2330 Nitrosococcus halophilus Nc4 flagellar L-ring protein YP_003527805.1 2401815 D 472759 CDS YP_003527806.1 292492367 8917327 2402673..2403776 1 NC_013960.1 PFAM: flagellar P-ring protein; KEGG: noc:Noc_2371 flagellar basal body P-ring protein; flagellar P-ring protein 2403776 8917327 Nhal_2331 Nitrosococcus halophilus Nc4 flagellar P-ring protein YP_003527806.1 2402673 D 472759 CDS YP_003527807.1 292492368 8917328 2403855..2404772 1 NC_013960.1 KEGG: noc:Noc_2370 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; flagellar rod assembly protein/muramidase FlgJ 2404772 8917328 Nhal_2332 Nitrosococcus halophilus Nc4 flagellar rod assembly protein/muramidase FlgJ YP_003527807.1 2403855 D 472759 CDS YP_003527808.1 292492369 8917329 2404877..2406820 1 NC_013960.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: noc:Noc_2369 hypothetical protein; flagellar hook-associated protein FlgK 2406820 8917329 Nhal_2333 Nitrosococcus halophilus Nc4 flagellar hook-associated protein FlgK YP_003527808.1 2404877 D 472759 CDS YP_003527809.1 292492370 8917330 2406824..2408026 1 NC_013960.1 TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: noc:Noc_2368 flagellin-like; flagellar hook-associated protein 3 2408026 8917330 Nhal_2334 Nitrosococcus halophilus Nc4 flagellar hook-associated protein 3 YP_003527809.1 2406824 D 472759 CDS YP_003527810.1 292492371 8917331 2408043..2409272 1 NC_013960.1 PFAM: EAL domain protein; metal-dependent hydrolase HDOD; SMART: EAL domain protein; KEGG: tgr:Tgr7_0322 signal transduction protein; EAL domain-containing protein 2409272 8917331 Nhal_2335 Nitrosococcus halophilus Nc4 EAL domain-containing protein YP_003527810.1 2408043 D 472759 CDS YP_003527811.1 292492372 8917332 2409607..2411076 1 NC_013960.1 PFAM: flagellin domain protein; flagellin hook IN repeat protein; KEGG: lpn:lpg1340 flagellin; flagellin domain-containing protein 2411076 8917332 Nhal_2336 Nitrosococcus halophilus Nc4 flagellin domain-containing protein YP_003527811.1 2409607 D 472759 CDS YP_003527812.1 292492373 8917333 2411154..2411552 1 NC_013960.1 PFAM: flagellar protein FlaG protein; KEGG: noc:Noc_2366 flagellar protein FlaG protein; flagellar protein FlaG protein 2411552 8917333 Nhal_2337 Nitrosococcus halophilus Nc4 flagellar protein FlaG protein YP_003527812.1 2411154 D 472759 CDS YP_003527813.1 292492374 8917334 2411586..2413625 1 NC_013960.1 PFAM: flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; flagellar hook-associated protein 2 domain protein; KEGG: noc:Noc_2365 flagellar hook-associated protein 2; flagellar hook-associated 2 domain-containing protein 2413625 8917334 Nhal_2338 Nitrosococcus halophilus Nc4 flagellar hook-associated 2 domain-containing protein YP_003527813.1 2411586 D 472759 CDS YP_003527814.1 292492375 8917335 2413992..2414435 1 NC_013960.1 TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS; KEGG: noc:Noc_2364 flagellar protein FliS; flagellar protein FliS 2414435 8917335 Nhal_2339 Nitrosococcus halophilus Nc4 flagellar protein FliS YP_003527814.1 2413992 D 472759 CDS YP_003527815.1 292492376 8917336 2414499..2414804 1 NC_013960.1 KEGG: noc:Noc_2363 hypothetical protein; hypothetical protein 2414804 8917336 Nhal_2340 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527815.1 2414499 D 472759 CDS YP_003527816.1 292492377 8917337 2414877..2415509 1 NC_013960.1 KEGG: tgr:Tgr7_1974 hypothetical protein; hypothetical protein 2415509 8917337 Nhal_2341 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527816.1 2414877 D 472759 CDS YP_003527817.1 292492378 8917338 2415612..2417054 1 NC_013960.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: noc:Noc_2362 sigma-54 dependent trancsriptional regulator; Fis family transcriptional regulator 2417054 8917338 Nhal_2342 Nitrosococcus halophilus Nc4 Fis family transcriptional regulator YP_003527817.1 2415612 D 472759 CDS YP_003527818.1 292492379 8917339 2417262..2418293 1 NC_013960.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: ATPase AAA; KEGG: noc:Noc_2361 two component sigma-54 specific, transcriptional regulator, fis famliy; Fis family transcriptional regulator 2418293 8917339 Nhal_2343 Nitrosococcus halophilus Nc4 Fis family transcriptional regulator YP_003527818.1 2417262 D 472759 CDS YP_003527819.1 292492380 8917340 2418347..2418667 1 NC_013960.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: noc:Noc_2360 flagellar hook-basal body complex protein FliE; flagellar hook-basal body complex subunit FliE 2418667 8917340 Nhal_2344 Nitrosococcus halophilus Nc4 flagellar hook-basal body complex subunit FliE YP_003527819.1 2418347 D 472759 CDS YP_003527820.1 292492381 8917341 2418802..2420502 1 NC_013960.1 TIGRFAM: flagellar M-ring protein FliF; PFAM: flagellar M-ring domain protein; secretory protein YscJ/FliF family protein; KEGG: noc:Noc_2359 flagellar FliF M-ring protein; flagellar M-ring protein FliF 2420502 8917341 Nhal_2345 Nitrosococcus halophilus Nc4 flagellar M-ring protein FliF YP_003527820.1 2418802 D 472759 CDS YP_003527821.1 292492382 8917342 2420495..2421499 1 NC_013960.1 TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; KEGG: noc:Noc_2358 flagellar motor switch protein FliG; flagellar motor switch protein FliG 2421499 8917342 Nhal_2346 Nitrosococcus halophilus Nc4 flagellar motor switch protein FliG YP_003527821.1 2420495 D 472759 CDS YP_003527822.1 292492383 8917343 2421486..2422220 1 NC_013960.1 PFAM: flagellar assembly protein FliH; KEGG: noc:Noc_2357 flagellar assembly protein FliH; flagellar assembly protein FliH 2422220 8917343 Nhal_2347 Nitrosococcus halophilus Nc4 flagellar assembly protein FliH YP_003527822.1 2421486 D 472759 CDS YP_003527823.1 292492384 8917344 2422213..2423655 1 NC_013960.1 KEGG: noc:Noc_2356 flagellar biosynthesis/type III secretory pathway ATPase, FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; SMART: AAA ATPase; ATPase, FliI/YscN family 2423655 8917344 Nhal_2348 Nitrosococcus halophilus Nc4 ATPase, FliI/YscN family YP_003527823.1 2422213 D 472759 CDS YP_003527824.1 292492385 8917345 2423652..2424104 1 NC_013960.1 TIGRFAM: flagellar export protein FliJ; PFAM: flagellar FliJ protein; KEGG: noc:Noc_2355 flagellar biosynthesis chaperone FliJ-like protein; flagellar export protein FliJ 2424104 8917345 Nhal_2349 Nitrosococcus halophilus Nc4 flagellar export protein FliJ YP_003527824.1 2423652 D 472759 CDS YP_003527825.1 292492386 8917346 2424291..2425940 1 NC_013960.1 PFAM: flagellar hook-length control protein; KEGG: noc:Noc_2354 flagellar hook-length control protein; flagellar hook-length control protein 2425940 8917346 Nhal_2350 Nitrosococcus halophilus Nc4 flagellar hook-length control protein YP_003527825.1 2424291 D 472759 CDS YP_003527826.1 292492387 8917347 complement(2425945..2426643) 1 NC_013960.1 KEGG: noc:Noc_2353 orotidine-5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 2426643 8917347 Nhal_2351 Nitrosococcus halophilus Nc4 orotidine 5'-phosphate decarboxylase YP_003527826.1 2425945 R 472759 CDS YP_003527827.1 292492388 8917348 complement(2426709..2427035) 1 NC_013960.1 PFAM: hypothetical protein; KEGG: cbd:CBUD_A0056 DNA-binding protein; hypothetical protein 2427035 8917348 Nhal_2352 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527827.1 2426709 R 472759 CDS YP_003527828.1 292492389 8917349 2427225..2427776 1 NC_013960.1 KEGG: dat:HRM2_34090 hypothetical protein; hypothetical protein 2427776 8917349 Nhal_2353 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527828.1 2427225 D 472759 CDS YP_003527829.1 292492390 8917350 complement(join(2427931..2428371,2428371..2428649)) 1 NC_013960.1 hypothetical protein 2428649 8917350 Nhal_2354 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527829.1 2427931 R 472759 CDS YP_003527830.1 292492391 8917351 2428872..2429297 1 NC_013960.1 TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: nucleotidyltransferase substrate binding protein HI0074; KEGG: gbm:Gbem_1476 nucleotidyltransferase substrate binding protein, HI0074 family; nucleotidyltransferase substrate binding protein 2429297 8917351 Nhal_2355 Nitrosococcus halophilus Nc4 nucleotidyltransferase substrate binding protein YP_003527830.1 2428872 D 472759 CDS YP_003527831.1 292492392 8917352 2429294..2429605 1 NC_013960.1 PFAM: DNA polymerase beta domain protein region; KEGG: gur:Gura_1133 DNA polymerase subunit beta; DNA polymerase beta domain-containing protein 2429605 8917352 Nhal_2356 Nitrosococcus halophilus Nc4 DNA polymerase beta domain-containing protein YP_003527831.1 2429294 D 472759 CDS YP_003527832.1 292492393 8917353 2429785..2430900 1 NC_013960.1 KEGG: noc:Noc_2352 queuine tRNA-ribosyltransferase; TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; PFAM: queuine/other tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 2430900 8917353 Nhal_2357 Nitrosococcus halophilus Nc4 queuine tRNA-ribosyltransferase YP_003527832.1 2429785 D 472759 CDS YP_003527833.1 292492394 8917354 2430935..2431279 1 NC_013960.1 TIGRFAM: preprotein translocase subunit YajC; PFAM: YajC family protein; KEGG: noc:Noc_2351 preprotein translocase subunit, YajC; preprotein translocase subunit YajC 2431279 8917354 Nhal_2358 Nitrosococcus halophilus Nc4 preprotein translocase subunit YajC YP_003527833.1 2430935 D 472759 CDS YP_003527834.1 292492395 8917355 2431300..2433156 1 NC_013960.1 TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: noc:Noc_2350 preprotein translocase subunit SecD; protein-export membrane protein SecD 2433156 8917355 Nhal_2359 Nitrosococcus halophilus Nc4 protein-export membrane protein SecD YP_003527834.1 2431300 D 472759 CDS YP_003527835.1 292492396 8917356 2433166..2434110 1 NC_013960.1 TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: noc:Noc_2349 preprotein translocase subunit SecF; protein-export membrane protein SecF 2434110 8917356 Nhal_2360 Nitrosococcus halophilus Nc4 protein-export membrane protein SecF YP_003527835.1 2433166 D 472759 CDS YP_003527836.1 292492397 8917357 2434776..2435279 1 NC_013960.1 KEGG: noc:Noc_2348 hypothetical protein; hypothetical protein 2435279 8917357 Nhal_2361 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527836.1 2434776 D 472759 CDS YP_003527837.1 292492398 8917358 2435294..2436667 1 NC_013960.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: noc:Noc_2347 UDP-N-acetylmuramate, L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; UDP-N-acetylmuramate 2436667 8917358 Nhal_2362 Nitrosococcus halophilus Nc4 UDP-N-acetylmuramate YP_003527837.1 2435294 D 472759 CDS YP_003527838.1 292492399 8917359 2436664..2437278 1 NC_013960.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: noc:Noc_2346 phenylacrylic acid decarboxylase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 2437278 8917359 Nhal_2363 Nitrosococcus halophilus Nc4 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_003527838.1 2436664 D 472759 CDS YP_003527839.1 292492400 8917360 complement(2437320..2438996) 1 NC_013960.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: noc:Noc_2345 2-polyprenylphenol 6-hydroxylase; 2-polyprenylphenol 6-hydroxylase 2438996 8917360 Nhal_2364 Nitrosococcus halophilus Nc4 2-polyprenylphenol 6-hydroxylase YP_003527839.1 2437320 R 472759 CDS YP_003527840.1 292492401 8917361 complement(2438993..2439601) 1 NC_013960.1 PFAM: sterol-binding domain protein; KEGG: noc:Noc_2344 hypothetical protein; sterol-binding domain-containing protein 2439601 8917361 Nhal_2365 Nitrosococcus halophilus Nc4 sterol-binding domain-containing protein YP_003527840.1 2438993 R 472759 CDS YP_003527841.1 292492402 8917362 complement(2439699..2440445) 1 NC_013960.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: noc:Noc_2343 ubiquinone/menaquinone biosynthesis methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase 2440445 8917362 Nhal_2366 Nitrosococcus halophilus Nc4 ubiquinone/menaquinone biosynthesis methyltransferase YP_003527841.1 2439699 R 472759 CDS YP_003527842.1 292492403 8917363 complement(2440453..2440845) 1 NC_013960.1 PFAM: protein of unknown function DUF971; KEGG: noc:Noc_2342 hypothetical protein; hypothetical protein 2440845 8917363 Nhal_2367 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527842.1 2440453 R 472759 CDS YP_003527843.1 292492404 8917364 complement(2440878..2442203) 1 NC_013960.1 KEGG: noc:Noc_2341 ATP-dependent protease ATP-binding subunit; TIGRFAM: heat shock protein HslVU, ATPase HslU; PFAM: ATPase AAA-2 domain protein; ATPase AAA; SMART: ATPase AAA; heat shock protein HslVU, ATPase HslU 2442203 8917364 Nhal_2368 Nitrosococcus halophilus Nc4 heat shock protein HslVU, ATPase HslU YP_003527843.1 2440878 R 472759 CDS YP_003527844.1 292492405 8917365 complement(2442224..2442763) 1 NC_013960.1 PFAM: 20S proteasome A and subunit betas; KEGG: noc:Noc_2340 ATP-dependent protease peptidase subunit; 20S proteasome subunits A and B 2442763 8917365 Nhal_2369 Nitrosococcus halophilus Nc4 20S proteasome subunits A and B YP_003527844.1 2442224 R 472759 CDS YP_003527845.1 292492406 8917366 complement(2442894..2443883) 1 NC_013960.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; polysaccharide biosynthesis protein CapD; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: noc:Noc_2339 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 2443883 8917366 Nhal_2370 Nitrosococcus halophilus Nc4 UDP-glucose 4-epimerase YP_003527845.1 2442894 R 472759 CDS YP_003527846.1 292492407 8917370 2444499..2445689 1 NC_013960.1 TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: noc:Noc_2338 elongation factor Tu; translation elongation factor Tu 2445689 8917370 Nhal_2371 Nitrosococcus halophilus Nc4 translation elongation factor Tu YP_003527846.1 2444499 D 472759 CDS YP_003527847.1 292492408 8917372 2445950..2446288 1 NC_013960.1 TIGRFAM: preprotein translocase subunit SecE; PFAM: protein secE/sec61-gamma protein; KEGG: noc:Noc_2337 SecE subunit of protein translocation complex; preprotein translocase subunit SecE 2446288 8917372 Nhal_2372 Nitrosococcus halophilus Nc4 preprotein translocase subunit SecE YP_003527847.1 2445950 D 472759 CDS YP_003527848.1 292492409 8917373 2446298..2446831 1 NC_013960.1 KEGG: noc:Noc_2336 transcription antitermination protein NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KOW domain protein; SMART: NGN domain protein; KOW domain protein; transcription termination/antitermination factor NusG 2446831 8917373 Nhal_2373 Nitrosococcus halophilus Nc4 transcription termination/antitermination factor NusG YP_003527848.1 2446298 D 472759 CDS YP_003527849.1 292492410 8917374 2446916..2447347 1 NC_013960.1 KEGG: noc:Noc_2335 ribosomal protein L11; TIGRFAM: ribosomal protein L11; PFAM: ribosomal protein L11; SMART: ribosomal protein L11; 50S ribosomal protein L11 2447347 8917374 Nhal_2374 Nitrosococcus halophilus Nc4 50S ribosomal protein L11 YP_003527849.1 2446916 D 472759 CDS YP_003527850.1 292492411 8917375 2447351..2448046 1 NC_013960.1 TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1; KEGG: noc:Noc_2334 ribosomal protein L1; 50S ribosomal protein L1 2448046 8917375 Nhal_2375 Nitrosococcus halophilus Nc4 50S ribosomal protein L1 YP_003527850.1 2447351 D 472759 CDS YP_003527851.1 292492412 8917376 2448310..2448870 1 NC_013960.1 PFAM: ribosomal protein L10; KEGG: noc:Noc_2333 50S ribosomal protein L10; 50S ribosomal protein L10 2448870 8917376 Nhal_2376 Nitrosococcus halophilus Nc4 50S ribosomal protein L10 YP_003527851.1 2448310 D 472759 CDS YP_003527852.1 292492413 8917377 2448940..2449323 1 NC_013960.1 TIGRFAM: ribosomal protein L7/L12; PFAM: ribosomal protein L7/L12; KEGG: noc:Noc_2332 50S ribosomal protein L7/L12; 50S ribosomal protein L7/L12 2449323 8917377 Nhal_2377 Nitrosococcus halophilus Nc4 50S ribosomal protein L7/L12 YP_003527852.1 2448940 D 472759 CDS YP_003527853.1 292492414 8917378 2449522..2453607 1 NC_013960.1 KEGG: noc:Noc_2331 DNA-directed RNA polymerase, beta subunit; TIGRFAM: DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 3; RNA polymerase Rpb2 domain 2; RNA polymerase subunit beta; DNA-directed RNA polymerase subunit beta 2453607 8917378 Nhal_2378 Nitrosococcus halophilus Nc4 DNA-directed RNA polymerase subunit beta YP_003527853.1 2449522 D 472759 CDS YP_003527854.1 292492415 8917379 2453685..2457896 1 NC_013960.1 KEGG: noc:Noc_2330 DNA-directed RNA polymerase subunit beta'; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 3; RNA polymerase subunit alpha; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein; DNA-directed RNA polymerase subunit beta' 2457896 8917379 Nhal_2379 Nitrosococcus halophilus Nc4 DNA-directed RNA polymerase subunit beta' YP_003527854.1 2453685 D 472759 CDS YP_003527855.1 292492416 8917380 2458074..2458448 1 NC_013960.1 TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; KEGG: noc:Noc_2329 30S ribosomal protein S12; 30S ribosomal protein S12 2458448 8917380 Nhal_2380 Nitrosococcus halophilus Nc4 30S ribosomal protein S12 YP_003527855.1 2458074 D 472759 CDS YP_003527856.1 292492417 8917381 2458503..2458973 1 NC_013960.1 TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7; KEGG: noc:Noc_2328 30S ribosomal protein S7; 30S ribosomal protein S7 2458973 8917381 Nhal_2381 Nitrosococcus halophilus Nc4 30S ribosomal protein S7 YP_003527856.1 2458503 D 472759 CDS YP_003527857.1 292492418 8917382 2459020..2461113 1 NC_013960.1 TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: noc:Noc_2327 elongation factor G; translation elongation factor G 2461113 8917382 Nhal_2382 Nitrosococcus halophilus Nc4 translation elongation factor G YP_003527857.1 2459020 D 472759 CDS YP_003527858.1 292492419 8917383 2461151..2462341 1 NC_013960.1 TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: noc:Noc_2338 elongation factor Tu; translation elongation factor Tu 2462341 8917383 Nhal_2383 Nitrosococcus halophilus Nc4 translation elongation factor Tu YP_003527858.1 2461151 D 472759 CDS YP_003527859.1 292492420 8917384 2462346..2462660 1 NC_013960.1 TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10; KEGG: noc:Noc_2325 30S ribosomal protein S10; 30S ribosomal protein S10 2462660 8917384 Nhal_2384 Nitrosococcus halophilus Nc4 30S ribosomal protein S10 YP_003527859.1 2462346 D 472759 CDS YP_003527860.1 292492421 8917385 2462696..2463346 1 NC_013960.1 PFAM: ribosomal protein L3; KEGG: noc:Noc_2324 ribosomal protein L3; 50S ribosomal protein L3 2463346 8917385 Nhal_2385 Nitrosococcus halophilus Nc4 50S ribosomal protein L3 YP_003527860.1 2462696 D 472759 CDS YP_003527861.1 292492422 8917386 2463364..2463984 1 NC_013960.1 PFAM: ribosomal protein L4/L1e; KEGG: noc:Noc_2323 ribosomal protein L4/L1e; 50S ribosomal protein L4/L1e 2463984 8917386 Nhal_2386 Nitrosococcus halophilus Nc4 50S ribosomal protein L4/L1e YP_003527861.1 2463364 D 472759 CDS YP_003527862.1 292492423 8917387 2463981..2464277 1 NC_013960.1 PFAM: ribosomal protein L25/L23; KEGG: noc:Noc_2322 ribosomal L23 protein; 50S ribosomal protein L25/L23 2464277 8917387 Nhal_2387 Nitrosococcus halophilus Nc4 50S ribosomal protein L25/L23 YP_003527862.1 2463981 D 472759 CDS YP_003527863.1 292492424 8917388 2464315..2465136 1 NC_013960.1 TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2; KEGG: noc:Noc_2321 50S ribosomal protein L2; 50S ribosomal protein L2 2465136 8917388 Nhal_2388 Nitrosococcus halophilus Nc4 50S ribosomal protein L2 YP_003527863.1 2464315 D 472759 CDS YP_003527864.1 292492425 8917389 2465158..2465430 1 NC_013960.1 TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: noc:Noc_2320 ribosomal protein S19; 30S ribosomal protein S19 2465430 8917389 Nhal_2389 Nitrosococcus halophilus Nc4 30S ribosomal protein S19 YP_003527864.1 2465158 D 472759 CDS YP_003527865.1 292492426 8917390 2465442..2465774 1 NC_013960.1 TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: noc:Noc_2319 ribosomal protein L22; 50S ribosomal protein L22 2465774 8917390 Nhal_2390 Nitrosococcus halophilus Nc4 50S ribosomal protein L22 YP_003527865.1 2465442 D 472759 CDS YP_003527866.1 292492427 8917391 2465787..2466458 1 NC_013960.1 KEGG: noc:Noc_2318 30S ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; ribosomal protein S3 domain; SMART: KH domain protein; 30S ribosomal protein S3 2466458 8917391 Nhal_2391 Nitrosococcus halophilus Nc4 30S ribosomal protein S3 YP_003527866.1 2465787 D 472759 CDS YP_003527867.1 292492428 8917392 2466470..2466883 1 NC_013960.1 TIGRFAM: ribosomal protein L16; PFAM: ribosomal protein L16; KEGG: noc:Noc_2317 50S ribosomal protein L16; 50S ribosomal protein L16 2466883 8917392 Nhal_2392 Nitrosococcus halophilus Nc4 50S ribosomal protein L16 YP_003527867.1 2466470 D 472759 CDS YP_003527868.1 292492429 8917393 2466883..2467077 1 NC_013960.1 TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: noc:Noc_2316 ribosomal protein L29; 50S ribosomal protein L29 2467077 8917393 Nhal_2393 Nitrosococcus halophilus Nc4 50S ribosomal protein L29 YP_003527868.1 2466883 D 472759 CDS YP_003527869.1 292492430 8917394 2467080..2467340 1 NC_013960.1 PFAM: ribosomal protein S17; KEGG: noc:Noc_2315 ribosomal protein S17; 30S ribosomal protein S17 2467340 8917394 Nhal_2394 Nitrosococcus halophilus Nc4 30S ribosomal protein S17 YP_003527869.1 2467080 D 472759 CDS YP_003527870.1 292492431 8917395 2467382..2467750 1 NC_013960.1 TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: noc:Noc_2314 ribosomal protein L14; 50S ribosomal protein L14 2467750 8917395 Nhal_2395 Nitrosococcus halophilus Nc4 50S ribosomal protein L14 YP_003527870.1 2467382 D 472759 CDS YP_003527871.1 292492432 8917396 2467762..2468082 1 NC_013960.1 TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; KEGG: noc:Noc_2313 ribosomal protein L24; 50S ribosomal protein L24 2468082 8917396 Nhal_2396 Nitrosococcus halophilus Nc4 50S ribosomal protein L24 YP_003527871.1 2467762 D 472759 CDS YP_003527872.1 292492433 8917397 2468140..2468679 1 NC_013960.1 PFAM: ribosomal protein L5; KEGG: noc:Noc_2312 50S ribosomal protein L5; 50S ribosomal protein L5 2468679 8917397 Nhal_2397 Nitrosococcus halophilus Nc4 50S ribosomal protein L5 YP_003527872.1 2468140 D 472759 CDS YP_003527873.1 292492434 8917398 2468704..2469009 1 NC_013960.1 PFAM: ribosomal protein S14; KEGG: noc:Noc_2311 ribosomal protein S14; 30S ribosomal protein S14 2469009 8917398 Nhal_2398 Nitrosococcus halophilus Nc4 30S ribosomal protein S14 YP_003527873.1 2468704 D 472759 CDS YP_003527874.1 292492435 8917399 2469052..2469444 1 NC_013960.1 PFAM: ribosomal protein S8; KEGG: noc:Noc_2310 ribosomal protein S8; 30S ribosomal protein S8 2469444 8917399 Nhal_2399 Nitrosococcus halophilus Nc4 30S ribosomal protein S8 YP_003527874.1 2469052 D 472759 CDS YP_003527875.1 292492436 8917400 2469459..2469992 1 NC_013960.1 PFAM: ribosomal protein L6; KEGG: noc:Noc_2309 ribosomal protein L6; 50S ribosomal protein L6 2469992 8917400 Nhal_2400 Nitrosococcus halophilus Nc4 50S ribosomal protein L6 YP_003527875.1 2469459 D 472759 CDS YP_003527876.1 292492437 8917401 2470014..2470367 1 NC_013960.1 TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: noc:Noc_2308 ribosomal protein L18; 50S ribosomal protein L18 2470367 8917401 Nhal_2401 Nitrosococcus halophilus Nc4 50S ribosomal protein L18 YP_003527876.1 2470014 D 472759 CDS YP_003527877.1 292492438 8917402 2470380..2470889 1 NC_013960.1 TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 ; ribosomal protein S5 domain protein; KEGG: noc:Noc_2307 30S ribosomal protein S5; 30S ribosomal protein S5 2470889 8917402 Nhal_2402 Nitrosococcus halophilus Nc4 30S ribosomal protein S5 YP_003527877.1 2470380 D 472759 CDS YP_003527878.1 292492439 8917403 2470889..2471080 1 NC_013960.1 TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; KEGG: tcx:Tcr_0313 ribosomal protein L30; 50S ribosomal protein L30 2471080 8917403 Nhal_2403 Nitrosococcus halophilus Nc4 50S ribosomal protein L30 YP_003527878.1 2470889 D 472759 CDS YP_003527879.1 292492440 8917404 2471082..2471516 1 NC_013960.1 TIGRFAM: ribosomal protein L15; PFAM: ribosomal protein L15; KEGG: noc:Noc_2306 ribosomal protein L15; 50S ribosomal protein L15 2471516 8917404 Nhal_2404 Nitrosococcus halophilus Nc4 50S ribosomal protein L15 YP_003527879.1 2471082 D 472759 CDS YP_003527880.1 292492441 8917405 2471519..2472880 1 NC_013960.1 TIGRFAM: preprotein translocase subunit SecY; PFAM: SecY protein; KEGG: noc:Noc_2305 preprotein translocase subunit SecY; preprotein translocase subunit SecY 2472880 8917405 Nhal_2405 Nitrosococcus halophilus Nc4 preprotein translocase subunit SecY YP_003527880.1 2471519 D 472759 CDS YP_003527881.1 292492442 8917406 2472906..2473019 1 NC_013960.1 TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: noc:Noc_2304 ribosomal protein L36; 50S ribosomal protein L36 2473019 8917406 Nhal_2406 Nitrosococcus halophilus Nc4 50S ribosomal protein L36 YP_003527881.1 2472906 D 472759 CDS YP_003527882.1 292492443 8917407 2473123..2473479 1 NC_013960.1 PFAM: ribosomal protein S13; KEGG: noc:Noc_2303 30S ribosomal protein S13; 30S ribosomal protein S13 2473479 8917407 Nhal_2407 Nitrosococcus halophilus Nc4 30S ribosomal protein S13 YP_003527882.1 2473123 D 472759 CDS YP_003527883.1 292492444 8917408 2473502..2473885 1 NC_013960.1 PFAM: ribosomal protein S11; KEGG: noc:Noc_2302 30S ribosomal protein S11; 30S ribosomal protein S11 2473885 8917408 Nhal_2408 Nitrosococcus halophilus Nc4 30S ribosomal protein S11 YP_003527883.1 2473502 D 472759 CDS YP_003527884.1 292492445 8917409 2473901..2474527 1 NC_013960.1 KEGG: noc:Noc_2301 ribosomal protein S4; TIGRFAM: ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; 30S ribosomal protein S4 2474527 8917409 Nhal_2409 Nitrosococcus halophilus Nc4 30S ribosomal protein S4 YP_003527884.1 2473901 D 472759 CDS YP_003527885.1 292492446 8917410 2474620..2475618 1 NC_013960.1 KEGG: noc:Noc_2300 DNA-directed RNA polymerase subunit alpha; TIGRFAM: DNA-directed RNA polymerase, subunit alpha; PFAM: RNA polymerase insert; RNA polymerase subunit alpha domain protein; RNA polymerase dimerisation; SMART: RNA polymerase RpoA/D/Rpb3-type; DNA-directed RNA polymerase subunit alpha 2475618 8917410 Nhal_2410 Nitrosococcus halophilus Nc4 DNA-directed RNA polymerase subunit alpha YP_003527885.1 2474620 D 472759 CDS YP_003527886.1 292492447 8917411 2475655..2476035 1 NC_013960.1 TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: noc:Noc_2299 ribosomal protein L17; 50S ribosomal protein L17 2476035 8917411 Nhal_2411 Nitrosococcus halophilus Nc4 50S ribosomal protein L17 YP_003527886.1 2475655 D 472759 CDS YP_003527887.1 292492448 8917412 2476233..2476976 1 NC_013960.1 PFAM: protein of unknown function DUF62; KEGG: noc:Noc_2298 hypothetical protein; hypothetical protein 2476976 8917412 Nhal_2412 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527887.1 2476233 D 472759 CDS YP_003527888.1 292492449 8917413 complement(2476999..2477709) 1 NC_013960.1 KEGG: noc:Noc_2296 3-demethylubiquinone-9 3-methyltransferase; TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: methyltransferase type 11; NodS family protein; methyltransferase small; UbiE/COQ5 methyltransferase; methyltransferase type 12; ubiquinone biosynthesis O-methyltransferase 2477709 8917413 Nhal_2413 Nitrosococcus halophilus Nc4 ubiquinone biosynthesis O-methyltransferase YP_003527888.1 2476999 R 472759 CDS YP_003527889.1 292492450 8917414 complement(2477706..2479034) 1 NC_013960.1 PFAM: amidohydrolase; amidohydrolase; KEGG: noc:Noc_2295 N-ethylammeline chlorohydrolase; amidohydrolase 2479034 8917414 Nhal_2414 Nitrosococcus halophilus Nc4 amidohydrolase YP_003527889.1 2477706 R 472759 CDS YP_003527890.1 292492451 8917415 2479095..2479580 1 NC_013960.1 KEGG: noc:Noc_2294 hypothetical protein; hypothetical protein 2479580 8917415 Nhal_2415 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527890.1 2479095 D 472759 CDS YP_003527891.1 292492452 8917416 2479654..2480703 1 NC_013960.1 KEGG: noc:Noc_2293 initiation factor 2B alpha/beta/delta; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related; translation initiation factor, aIF-2BI family 2480703 8917416 Nhal_2416 Nitrosococcus halophilus Nc4 translation initiation factor, aIF-2BI family YP_003527891.1 2479654 D 472759 CDS YP_003527892.1 292492453 8917417 complement(2480700..2481620) 1 NC_013960.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: noc:Noc_2292 transcriptional regulator CysB-like protein; LysR family transcriptional regulator 2481620 8917417 Nhal_2417 Nitrosococcus halophilus Nc4 LysR family transcriptional regulator YP_003527892.1 2480700 R 472759 CDS YP_003527893.1 292492454 8917418 2481754..2482554 1 NC_013960.1 PFAM: protein of unknown function DUF81; KEGG: noc:Noc_2291 hypothetical protein; hypothetical protein 2482554 8917418 Nhal_2418 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527893.1 2481754 D 472759 CDS YP_003527894.1 292492455 8917419 2482570..2483283 1 NC_013960.1 KEGG: noc:Noc_2290 phosphoadenosine phosphosulfate reductase; TIGRFAM: adenylylsulfate reductase, thioredoxin dependent; phosphoadenosine phosphosulfate reductase; PFAM: phosphoadenosine phosphosulfate reductase; adenylylsulfate reductase, thioredoxin dependent 2483283 8917419 Nhal_2419 Nitrosococcus halophilus Nc4 adenylylsulfate reductase, thioredoxin dependent YP_003527894.1 2482570 D 472759 CDS YP_003527895.1 292492456 8917420 2483350..2484255 1 NC_013960.1 TIGRFAM: sulfate adenylyltransferase, small subunit; PFAM: phosphoadenosine phosphosulfate reductase; KEGG: noc:Noc_2289 sulfate adenylyltransferase subunit 2; sulfate adenylyltransferase, small subunit 2484255 8917420 Nhal_2420 Nitrosococcus halophilus Nc4 sulfate adenylyltransferase, small subunit YP_003527895.1 2483350 D 472759 CDS YP_003527896.1 292492457 8917421 2484269..2485543 1 NC_013960.1 KEGG: noc:Noc_2288 sulfate adenylyltransferase, large subunit; TIGRFAM: sulfate adenylyltransferase, large subunit; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; sulfate adenylyltransferase, large subunit 2485543 8917421 Nhal_2421 Nitrosococcus halophilus Nc4 sulfate adenylyltransferase, large subunit YP_003527896.1 2484269 D 472759 CDS YP_003527897.1 292492458 8917422 complement(2485587..2486594) 1 NC_013960.1 KEGG: noc:Noc_2287 hypothetical protein; hypothetical protein 2486594 8917422 Nhal_2422 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527897.1 2485587 R 472759 CDS YP_003527898.1 292492459 8917423 complement(2486630..2488075) 1 NC_013960.1 KEGG: noc:Noc_2286 hypothetical protein; hypothetical protein 2488075 8917423 Nhal_2423 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527898.1 2486630 R 472759 CDS YP_003527899.1 292492460 8917424 2488278..2488655 1 NC_013960.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: noc:Noc_2285 camphor resistance CrcB protein; CrcB protein 2488655 8917424 Nhal_2424 Nitrosococcus halophilus Nc4 CrcB protein YP_003527899.1 2488278 D 472759 CDS YP_003527900.1 292492461 8917425 2488668..2489009 1 NC_013960.1 PFAM: protein of unknown function DUF190; KEGG: noc:Noc_2284 hypothetical protein; hypothetical protein 2489009 8917425 Nhal_2425 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527900.1 2488668 D 472759 CDS YP_003527901.1 292492462 8917426 2489202..2491088 1 NC_013960.1 KEGG: noc:Noc_2283 DNA topoisomerase IV subunit B; TIGRFAM: DNA topoisomerase IV subunit beta; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; DNA topoisomerase IV subunit beta 2491088 8917426 Nhal_2426 Nitrosococcus halophilus Nc4 DNA topoisomerase IV subunit beta YP_003527901.1 2489202 D 472759 CDS YP_003527902.1 292492463 8917427 2491097..2493328 1 NC_013960.1 KEGG: noc:Noc_2282 DNA topoisomerase IV subunit A; TIGRFAM: DNA topoisomerase IV, subunit alpha; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A; DNA topoisomerase IV subunit alpha 2493328 8917427 Nhal_2427 Nitrosococcus halophilus Nc4 DNA topoisomerase IV subunit alpha YP_003527902.1 2491097 D 472759 CDS YP_003527903.1 292492464 8917428 2493362..2495260 1 NC_013960.1 PFAM: polysaccharide biosynthesis protein CapD; Male sterility domain; KR domain protein; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: noc:Noc_2281 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein CapD 2495260 8917428 Nhal_2428 Nitrosococcus halophilus Nc4 polysaccharide biosynthesis protein CapD YP_003527903.1 2493362 D 472759 CDS YP_003527904.1 292492465 8917429 2495257..2496144 1 NC_013960.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: nucleotidyl transferase; KEGG: noc:Noc_2280 UTP--glucose-1-phosphate uridylyltransferase; UTP-glucose-1-phosphate uridylyltransferase 2496144 8917429 Nhal_2429 Nitrosococcus halophilus Nc4 UTP-glucose-1-phosphate uridylyltransferase YP_003527904.1 2495257 D 472759 CDS YP_003527905.1 292492466 8917430 2496239..2497933 1 NC_013960.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: mca:MCA2577 dehydrogenase subunit; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit 2497933 8917430 Nhal_2430 Nitrosococcus halophilus Nc4 Respiratory-chain NADH dehydrogenase domain 51 kDa subunit YP_003527905.1 2496239 D 472759 CDS YP_003527906.1 292492467 8917431 2497933..2500743 1 NC_013960.1 TIGRFAM: formate dehydrogenase, subunit alpha; PFAM: molybdopterin oxidoreductase; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: reh:H16_B1700 tungsten-containing formate dehydrogenase subunit alpha; formate dehydrogenase subunit alpha 2500743 8917431 Nhal_2431 Nitrosococcus halophilus Nc4 formate dehydrogenase subunit alpha YP_003527906.1 2497933 D 472759 CDS YP_003527907.1 292492468 8917432 2501017..2501772 1 NC_013960.1 KEGG: noc:Noc_0789 acid phosphatase; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; stationary-phase survival protein SurE 2501772 8917432 Nhal_2432 Nitrosococcus halophilus Nc4 stationary-phase survival protein SurE YP_003527907.1 2501017 D 472759 CDS YP_003527908.1 292492469 8917433 2501769..2502428 1 NC_013960.1 KEGG: noc:Noc_0790 protein-L-isoaspartate(D-aspartate) O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 2502428 8917433 Nhal_2433 Nitrosococcus halophilus Nc4 protein-L-isoaspartate O-methyltransferase YP_003527908.1 2501769 D 472759 CDS YP_003527909.1 292492470 8917434 2502428..2503006 1 NC_013960.1 PFAM: SNARE associated Golgi protein; KEGG: noc:Noc_0791 hypothetical protein; hypothetical protein 2503006 8917434 Nhal_2434 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527909.1 2502428 D 472759 CDS YP_003527910.1 292492471 8917435 2503166..2503882 1 NC_013960.1 PFAM: peptidase M23; peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: noc:Noc_0792 peptidase M23B; peptidase M23 2503882 8917435 Nhal_2435 Nitrosococcus halophilus Nc4 peptidase M23 YP_003527910.1 2503166 D 472759 CDS YP_003527911.1 292492472 8917436 join(2504024..2504098,2504100..2505122) 1 NC_013960.1 hypothetical protein 2505122 8917436 Nhal_2436 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527911.1 2504024 D 472759 CDS YP_003527912.1 292492473 8917437 2505198..2506700 1 NC_013960.1 TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: tgr:Tgr7_1462 lysyl-tRNA synthetase; lysyl-tRNA synthetase 2506700 8917437 Nhal_2437 Nitrosococcus halophilus Nc4 lysyl-tRNA synthetase YP_003527912.1 2505198 D 472759 CDS YP_003527913.1 292492474 8917438 2506708..2507457 1 NC_013960.1 TIGRFAM: DNA repair protein RecO; PFAM: recombination protein O RecO; KEGG: noc:Noc_0794 recombination protein O, RecO; DNA repair protein RecO 2507457 8917438 Nhal_2438 Nitrosococcus halophilus Nc4 DNA repair protein RecO YP_003527913.1 2506708 D 472759 CDS YP_003527914.1 292492475 8917439 2507444..2508184 1 NC_013960.1 KEGG: noc:Noc_0795 pyridoxal phosphate biosynthetic protein PdxJ; TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ; PFAM: pyridoxal phosphate biosynthetic protein PdxJ; pyridoxal phosphate biosynthetic protein PdxJ 2508184 8917439 Nhal_2439 Nitrosococcus halophilus Nc4 pyridoxal phosphate biosynthetic protein PdxJ YP_003527914.1 2507444 D 472759 CDS YP_003527915.1 292492476 8917440 2508181..2508600 1 NC_013960.1 TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: noc:Noc_0796 holo-acyl carrier protein synthase; holo-ACP synthase 2508600 8917440 Nhal_2440 Nitrosococcus halophilus Nc4 holo-ACP synthase YP_003527915.1 2508181 D 472759 CDS YP_003527916.1 292492477 8917441 2508717..2509616 1 NC_013960.1 TIGRFAM: cysteine synthase B; cysteine synthase; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; KEGG: noc:Noc_0797 cysteine synthase B; cysteine synthase B 2509616 8917441 Nhal_2441 Nitrosococcus halophilus Nc4 cysteine synthase B YP_003527916.1 2508717 D 472759 CDS YP_003527917.1 292492478 8917442 2509741..2511750 1 NC_013960.1 KEGG: noc:Noc_0798 hypothetical protein; hypothetical protein 2511750 8917442 Nhal_2442 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527917.1 2509741 D 472759 CDS YP_003527918.1 292492479 8917443 2511758..2512366 1 NC_013960.1 KEGG: noc:Noc_0799 hypothetical protein; hypothetical protein 2512366 8917443 Nhal_2443 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527918.1 2511758 D 472759 CDS YP_003527919.1 292492480 8917444 2512378..2513145 1 NC_013960.1 KEGG: noc:Noc_0800 hypothetical protein; hypothetical protein 2513145 8917444 Nhal_2444 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527919.1 2512378 D 472759 CDS YP_003527920.1 292492481 8917445 2513225..2514565 1 NC_013960.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: (uracil-5)-methyltransferase; KEGG: noc:Noc_0801 23S rRNA methyltransferase/RumA; TrmA family RNA methyltransferase 2514565 8917445 Nhal_2445 Nitrosococcus halophilus Nc4 TrmA family RNA methyltransferase YP_003527920.1 2513225 D 472759 CDS YP_003527921.1 292492482 8917446 2514716..2515213 1 NC_013960.1 KEGG: noc:Noc_0802 riboflavin synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase; 6,7-dimethyl-8-ribityllumazine synthase 2515213 8917446 Nhal_2446 Nitrosococcus halophilus Nc4 6,7-dimethyl-8-ribityllumazine synthase YP_003527921.1 2514716 D 472759 CDS YP_003527922.1 292492483 8917447 2515210..2515662 1 NC_013960.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: noc:Noc_0803 NusB antitermination factor; transcription antitermination factor NusB 2515662 8917447 Nhal_2447 Nitrosococcus halophilus Nc4 transcription antitermination factor NusB YP_003527922.1 2515210 D 472759 CDS YP_003527923.1 292492484 8917448 2515711..2516670 1 NC_013960.1 KEGG: noc:Noc_0804 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; thiamine-monophosphate kinase 2516670 8917448 Nhal_2448 Nitrosococcus halophilus Nc4 thiamine-monophosphate kinase YP_003527923.1 2515711 D 472759 CDS YP_003527924.1 292492485 8917449 2516673..2517164 1 NC_013960.1 PFAM: phosphatidylglycerophosphatase A; KEGG: noc:Noc_0805 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase 2517164 8917449 Nhal_2449 Nitrosococcus halophilus Nc4 phosphatidylglycerophosphatase YP_003527924.1 2516673 D 472759 CDS YP_003527925.1 292492486 8917450 complement(2517296..2519983) 1 NC_013960.1 KEGG: noc:Noc_0806 protein-P-II uridylyltransferase; TIGRFAM: protein-P-II uridylyltransferase; PFAM: GlnD PII-uridylyltransferase; metal-dependent phosphohydrolase HD sub domain; DNA polymerase beta domain protein region; amino acid-binding ACT domain protein; SMART: metal-dependent phosphohydrolase HD region; protein-P-II uridylyltransferase 2519983 8917450 Nhal_2450 Nitrosococcus halophilus Nc4 protein-P-II uridylyltransferase YP_003527925.1 2517296 R 472759 CDS YP_003527926.1 292492487 8917451 complement(2520007..2520774) 1 NC_013960.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: noc:Noc_0807 peptidase M24A; methionine aminopeptidase, type I 2520774 8917451 Nhal_2451 Nitrosococcus halophilus Nc4 methionine aminopeptidase, type I YP_003527926.1 2520007 R 472759 CDS YP_003527927.1 292492488 8917452 2521007..2521816 1 NC_013960.1 TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: noc:Noc_0808 ribosomal protein S2; 30S ribosomal protein S2 2521816 8917452 Nhal_2452 Nitrosococcus halophilus Nc4 30S ribosomal protein S2 YP_003527927.1 2521007 D 472759 CDS YP_003527928.1 292492489 8917453 2521926..2522810 1 NC_013960.1 TIGRFAM: translation elongation factor Ts; PFAM: translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; KEGG: noc:Noc_0809 elongation factor Ts; translation elongation factor Ts 2522810 8917453 Nhal_2453 Nitrosococcus halophilus Nc4 translation elongation factor Ts YP_003527928.1 2521926 D 472759 CDS YP_003527929.1 292492490 8917454 2522815..2523546 1 NC_013960.1 KEGG: noc:Noc_0810 uridylate kinase; TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; uridylate kinase 2523546 8917454 Nhal_2454 Nitrosococcus halophilus Nc4 uridylate kinase YP_003527929.1 2522815 D 472759 CDS YP_003527930.1 292492491 8917455 2523552..2524109 1 NC_013960.1 TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; KEGG: noc:Noc_0811 ribosome recycling factor; ribosome recycling factor 2524109 8917455 Nhal_2455 Nitrosococcus halophilus Nc4 ribosome recycling factor YP_003527930.1 2523552 D 472759 CDS YP_003527931.1 292492492 8917456 2524157..2524915 1 NC_013960.1 KEGG: noc:Noc_0812 di-trans-poly-cis-decaprenylcistransferase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; UDP diphosphate synthase 2524915 8917456 Nhal_2456 Nitrosococcus halophilus Nc4 UDP diphosphate synthase YP_003527931.1 2524157 D 472759 CDS YP_003527932.1 292492493 8917457 2524908..2525729 1 NC_013960.1 PFAM: phosphatidate cytidylyltransferase; KEGG: noc:Noc_0813 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 2525729 8917457 Nhal_2457 Nitrosococcus halophilus Nc4 phosphatidate cytidylyltransferase YP_003527932.1 2524908 D 472759 CDS YP_003527933.1 292492494 8917458 2525726..2526922 1 NC_013960.1 KEGG: noc:Noc_0814 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2526922 8917458 Nhal_2458 Nitrosococcus halophilus Nc4 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_003527933.1 2525726 D 472759 CDS YP_003527934.1 292492495 8917459 2526907..2528265 1 NC_013960.1 KEGG: noc:Noc_0815 peptidase M50, membrane-associated zinc metallopeptidase; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; membrane-associated zinc protein metalloprotease 2528265 8917459 Nhal_2459 Nitrosococcus halophilus Nc4 membrane-associated zinc protein metalloprotease YP_003527934.1 2526907 D 472759 CDS YP_003527935.1 292492496 8917460 2528623..2530929 1 NC_013960.1 TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); polypeptide-transport-associated domain protein FtsQ-type; surface antigen variable number repeat protein; KEGG: noc:Noc_0816 outer membrane protein; outer membrane protein assembly complex, YaeT protein 2530929 8917460 Nhal_2460 Nitrosococcus halophilus Nc4 outer membrane protein assembly complex, YaeT protein YP_003527935.1 2528623 D 472759 CDS YP_003527936.1 292492497 8917461 2531051..2531587 1 NC_013960.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: noc:Noc_0817 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp 2531587 8917461 Nhal_2461 Nitrosococcus halophilus Nc4 outer membrane chaperone Skp YP_003527936.1 2531051 D 472759 CDS YP_003527937.1 292492498 8917462 2532017..2532466 1 NC_013960.1 TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: noc:Noc_0818 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; 3-hydroxyacyl-ACP dehydratase 2532466 8917462 Nhal_2462 Nitrosococcus halophilus Nc4 3-hydroxyacyl-ACP dehydratase YP_003527937.1 2532017 D 472759 CDS YP_003527938.1 292492499 8917463 2532463..2533233 1 NC_013960.1 TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: noc:Noc_0819 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase; acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase 2533233 8917463 Nhal_2463 Nitrosococcus halophilus Nc4 acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase YP_003527938.1 2532463 D 472759 CDS YP_003527939.1 292492500 8917464 2533265..2533903 1 NC_013960.1 PFAM: hypothetical protein; KEGG: noc:Noc_0820 hypothetical protein; hypothetical protein 2533903 8917464 Nhal_2464 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527939.1 2533265 D 472759 CDS YP_003527940.1 292492501 8917465 2533903..2535123 1 NC_013960.1 KEGG: noc:Noc_0821 pyrrolo-quinoline quinone; TIGRFAM: outer membrane assembly lipoprotein YfgL; PFAM: pyrrolo-quinoline quinone; SMART: pyrrolo-quinoline quinone; outer membrane assembly lipoprotein YfgL 2535123 8917465 Nhal_2465 Nitrosococcus halophilus Nc4 outer membrane assembly lipoprotein YfgL YP_003527940.1 2533903 D 472759 CDS YP_003527941.1 292492502 8917466 2535286..2535831 1 NC_013960.1 PFAM: transposase IS605 OrfB; KEGG: noc:Noc_1587 transposase; transposase IS605 OrfB 2535831 8917466 Nhal_2466 Nitrosococcus halophilus Nc4 transposase IS605 OrfB YP_003527941.1 2535286 D 472759 CDS YP_003527942.1 292492503 8917467 2535943..2537337 1 NC_013960.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: noc:Noc_0822 small GTP-binding protein domain-containing protein; small GTP-binding protein 2537337 8917467 Nhal_2467 Nitrosococcus halophilus Nc4 small GTP-binding protein YP_003527942.1 2535943 D 472759 CDS YP_003527943.1 292492504 8917468 complement(2537358..2538626) 1 NC_013960.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: aeh:Mlg_1278 molybdopterin molybdochelatase; molybdenum cofactor synthesis protein 2538626 8917468 Nhal_2468 Nitrosococcus halophilus Nc4 molybdenum cofactor synthesis protein YP_003527943.1 2537358 R 472759 CDS YP_003527944.1 292492505 8917469 complement(2538631..2539263) 1 NC_013960.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: sse:Ssed_0121 molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein A 2539263 8917469 Nhal_2469 Nitrosococcus halophilus Nc4 molybdopterin-guanine dinucleotide biosynthesis protein A YP_003527944.1 2538631 R 472759 CDS YP_003527945.1 292492506 8917473 2540642..2541181 1 NC_013960.1 PFAM: ferritin; rubrerythrin; KEGG: reh:H16_A2248 bacterioferritin (cytochrome b1); ferritin 2541181 8917473 Nhal_2473 Nitrosococcus halophilus Nc4 ferritin YP_003527945.1 2540642 D 472759 CDS YP_003527946.1 292492507 8917474 complement(2541318..2542418) 1 NC_013960.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: noc:Noc_1457 YVTN beta-propeller repeat-containing protein; 40-residue YVTN family beta-propeller repeat-containing protein 2542418 8917474 Nhal_2474 Nitrosococcus halophilus Nc4 40-residue YVTN family beta-propeller repeat-containing protein YP_003527946.1 2541318 R 472759 CDS YP_003527947.1 292492508 8917475 complement(2542635..2542883) 1 NC_013960.1 SMART: CBS domain containing protein; CBS domain-containing protein 2542883 8917475 Nhal_2475 Nitrosococcus halophilus Nc4 CBS domain-containing protein YP_003527947.1 2542635 R 472759 CDS YP_003527948.1 292492509 8917476 2543114..2543845 1 NC_013960.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: noc:Noc_0823 OmpA/MotB; OmpA/MotB domain-containing protein 2543845 8917476 Nhal_2476 Nitrosococcus halophilus Nc4 OmpA/MotB domain-containing protein YP_003527948.1 2543114 D 472759 CDS YP_003527949.1 292492510 8917477 complement(2543870..2544259) 1 NC_013960.1 PFAM: thioesterase superfamily protein; KEGG: noc:Noc_0824 thioesterase superfamily protein; thioesterase superfamily protein 2544259 8917477 Nhal_2477 Nitrosococcus halophilus Nc4 thioesterase superfamily protein YP_003527949.1 2543870 R 472759 CDS YP_003527950.1 292492511 8917478 complement(2544264..2546066) 1 NC_013960.1 PFAM: AMP-dependent synthetase and ligase; KEGG: noc:Noc_0825 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 2546066 8917478 Nhal_2478 Nitrosococcus halophilus Nc4 AMP-dependent synthetase and ligase YP_003527950.1 2544264 R 472759 CDS YP_003527951.1 292492512 8917479 complement(2546070..2548088) 1 NC_013960.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: noc:Noc_0826 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein 2548088 8917479 Nhal_2479 Nitrosococcus halophilus Nc4 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein YP_003527951.1 2546070 R 472759 CDS YP_003527952.1 292492513 8917480 complement(2548093..2549397) 1 NC_013960.1 KEGG: noc:Noc_0827 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase; acetyl-CoA acetyltransferase 2549397 8917480 Nhal_2480 Nitrosococcus halophilus Nc4 acetyl-CoA acetyltransferase YP_003527952.1 2548093 R 472759 CDS YP_003527953.1 292492514 8917481 complement(2549525..2550445) 1 NC_013960.1 KEGG: hch:HCH_02753 hypothetical protein; hypothetical protein 2550445 8917481 Nhal_2481 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527953.1 2549525 R 472759 CDS YP_003527954.1 292492515 8917482 2551320..2552168 1 NC_013960.1 PFAM: glutamine cyclotransferase; KEGG: noc:Noc_0828 glutamine cyclotransferase; glutamine cyclotransferase 2552168 8917482 Nhal_2482 Nitrosococcus halophilus Nc4 glutamine cyclotransferase YP_003527954.1 2551320 D 472759 CDS YP_003527955.1 292492516 8917483 complement(2552174..2554972) 1 NC_013960.1 PFAM: phosphoenolpyruvate carboxylase; KEGG: tgr:Tgr7_0875 phosphoenolpyruvate carboxylase; phosphoenolpyruvate carboxylase 2554972 8917483 Nhal_2483 Nitrosococcus halophilus Nc4 phosphoenolpyruvate carboxylase YP_003527955.1 2552174 R 472759 CDS YP_003527956.1 292492517 8917484 2555137..2555946 1 NC_013960.1 KEGG: pla:Plav_2978 Ku domain-containing protein; TIGRFAM: Ku protein; PFAM: Ku domain protein; SMART: Ku domain protein; Ku protein 2555946 8917484 Nhal_2484 Nitrosococcus halophilus Nc4 Ku protein YP_003527956.1 2555137 D 472759 CDS YP_003527957.1 292492518 8917485 2555981..2556553 1 NC_013960.1 KEGG: tgr:Tgr7_1932 exonuclease; exonuclease 2556553 8917485 Nhal_2485 Nitrosococcus halophilus Nc4 exonuclease YP_003527957.1 2555981 D 472759 CDS YP_003527958.1 292492519 8917486 2556640..2558805 1 NC_013960.1 KEGG: mxa:MXAN_5012 group II decarboxylase family protein; group II decarboxylase family protein 2558805 8917486 Nhal_2486 Nitrosococcus halophilus Nc4 group II decarboxylase family protein YP_003527958.1 2556640 D 472759 CDS YP_003527959.1 292492520 8917487 2558848..2559276 1 NC_013960.1 KEGG: dal:Dalk_5270 hypothetical protein; hypothetical protein 2559276 8917487 Nhal_2487 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527959.1 2558848 D 472759 CDS YP_003527960.1 292492521 8917488 2559538..2560011 1 NC_013960.1 KEGG: sfu:Sfum_4006 hypothetical protein; hypothetical protein 2560011 8917488 Nhal_2488 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527960.1 2559538 D 472759 CDS YP_003527961.1 292492522 8917489 2560592..2562541 1 NC_013960.1 KEGG: sfu:Sfum_3451 glycogen branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase all-beta; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; 1,4-alpha-glucan branching protein 2562541 8917489 Nhal_2489 Nitrosococcus halophilus Nc4 1,4-alpha-glucan branching protein YP_003527961.1 2560592 D 472759 CDS YP_003527962.1 292492523 8917490 2562640..2564628 1 NC_013960.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: noc:Noc_0829 alpha amylase, catalytic region; alpha amylase catalytic subunit 2564628 8917490 Nhal_2490 Nitrosococcus halophilus Nc4 alpha amylase catalytic subunit YP_003527962.1 2562640 D 472759 CDS YP_003527963.1 292492524 8917491 2564642..2567974 1 NC_013960.1 KEGG: noc:Noc_0830 alpha amylase, catalytic region; TIGRFAM: trehalose synthase; trehalose synthase-fused maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; trehalose synthase 2567974 8917491 Nhal_2491 Nitrosococcus halophilus Nc4 trehalose synthase YP_003527963.1 2564642 D 472759 CDS YP_003527964.1 292492525 8917492 complement(2568157..2568552) 1 NC_013960.1 PFAM: cupin; KEGG: noc:Noc_0831 hypothetical protein; cupin 2568552 8917492 Nhal_2492 Nitrosococcus halophilus Nc4 cupin YP_003527964.1 2568157 R 472759 CDS YP_003527965.1 292492526 8917493 2568640..2569221 1 NC_013960.1 TIGRFAM: intracellular protease PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: pag:PLES_47141 amidase/protease; intracellular protease PfpI family 2569221 8917493 Nhal_2493 Nitrosococcus halophilus Nc4 intracellular protease PfpI family YP_003527965.1 2568640 D 472759 CDS YP_003527966.1 292492527 8917494 complement(2569283..2569534) 1 NC_013960.1 KEGG: noc:Noc_0832 hypothetical protein; hypothetical protein 2569534 8917494 Nhal_2494 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527966.1 2569283 R 472759 CDS YP_003527967.1 292492528 8917495 complement(2569699..2569800) 1 NC_013960.1 hypothetical protein 2569800 8917495 Nhal_2495 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527967.1 2569699 R 472759 CDS YP_003527968.1 292492529 8917496 complement(2569888..2570025) 1 NC_013960.1 hypothetical protein 2570025 8917496 Nhal_2496 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527968.1 2569888 R 472759 CDS YP_003527969.1 292492530 8917497 complement(2570560..2573973) 1 NC_013960.1 PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; ArgK protein; KEGG: noc:Noc_1893 methylmalonyl-CoA mutase-like; methylmalonyl-CoA mutase 2573973 8917497 Nhal_2497 Nitrosococcus halophilus Nc4 methylmalonyl-CoA mutase YP_003527969.1 2570560 R 472759 CDS YP_003527970.1 292492531 8917498 2574232..2575407 1 NC_013960.1 KEGG: noc:Noc_1891 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase; acetyl-CoA acetyltransferase 2575407 8917498 Nhal_2498 Nitrosococcus halophilus Nc4 acetyl-CoA acetyltransferase YP_003527970.1 2574232 D 472759 CDS YP_003527971.1 292492532 8917499 2575450..2577057 1 NC_013960.1 PFAM: carboxyl transferase; KEGG: noc:Noc_1890 propionyl-CoA carboxylase; methylcrotonoyl-CoA carboxylase 2577057 8917499 Nhal_2499 Nitrosococcus halophilus Nc4 methylcrotonoyl-CoA carboxylase YP_003527971.1 2575450 D 472759 CDS YP_003527972.1 292492533 8917500 2577067..2577849 1 NC_013960.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: noc:Noc_1889 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 2577849 8917500 Nhal_2500 Nitrosococcus halophilus Nc4 enoyl-CoA hydratase/isomerase YP_003527972.1 2577067 D 472759 CDS YP_003527973.1 292492534 8917501 2577979..2579031 1 NC_013960.1 PFAM: pyruvate carboxyltransferase; KEGG: noc:Noc_1888 pyruvate carboxyltransferase; pyruvate carboxyltransferase 2579031 8917501 Nhal_2501 Nitrosococcus halophilus Nc4 pyruvate carboxyltransferase YP_003527973.1 2577979 D 472759 CDS YP_003527974.1 292492535 8917502 2579181..2580323 1 NC_013960.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: pin:Ping_3063 transposase, IS605 OrfB family protein; transposase, IS605 OrfB family 2580323 8917502 Nhal_2502 Nitrosococcus halophilus Nc4 transposase, IS605 OrfB family YP_003527974.1 2579181 D 472759 CDS YP_003527975.1 292492536 8917503 2580331..2580507 1 NC_013960.1 hypothetical protein 2580507 8917503 Nhal_2503 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527975.1 2580331 D 472759 CDS YP_003527976.1 292492537 8917504 2580629..2580856 1 NC_013960.1 PFAM: protein of unknown function UPF0150; hypothetical protein 2580856 8917504 Nhal_2504 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527976.1 2580629 D 472759 CDS YP_003527977.1 292492538 8917505 2580856..2581047 1 NC_013960.1 hypothetical protein 2581047 8917505 Nhal_2505 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527977.1 2580856 D 472759 CDS YP_003527978.1 292492539 8917506 2581241..2581711 1 NC_013960.1 KEGG: noc:Noc_2202 hypothetical protein; hypothetical protein 2581711 8917506 Nhal_2506 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527978.1 2581241 D 472759 CDS YP_003527979.1 292492540 8917507 2581919..2583808 1 NC_013960.1 KEGG: noc:Noc_2201 hypothetical protein; hypothetical protein 2583808 8917507 Nhal_2507 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527979.1 2581919 D 472759 CDS YP_003527980.1 292492541 8917508 2583795..2584700 1 NC_013960.1 KEGG: noc:Noc_2200 lipoprotein; lipoprotein 2584700 8917508 Nhal_2508 Nitrosococcus halophilus Nc4 lipoprotein YP_003527980.1 2583795 D 472759 CDS YP_003527981.1 292492542 8917509 2584918..2586873 1 NC_013960.1 TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; KEGG: noc:Noc_2047 acetoacetyl-CoA synthetase; acetoacetyl-CoA synthase 2586873 8917509 Nhal_2509 Nitrosococcus halophilus Nc4 acetoacetyl-CoA synthase YP_003527981.1 2584918 D 472759 CDS YP_003527982.1 292492543 8917510 2586892..2587893 1 NC_013960.1 TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: noc:Noc_2046 zinc-containing alcohol dehydrogenase superfamily protein; quinone oxidoreductase, YhdH/YhfP family 2587893 8917510 Nhal_2510 Nitrosococcus halophilus Nc4 quinone oxidoreductase, YhdH/YhfP family YP_003527982.1 2586892 D 472759 CDS YP_003527983.1 292492544 8917511 2587883..2588056 1 NC_013960.1 KEGG: noc:Noc_0433 hypothetical protein; hypothetical protein 2588056 8917511 Nhal_2511 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527983.1 2587883 D 472759 CDS YP_003527984.1 292492545 8917512 2588471..2588845 1 NC_013960.1 PFAM: HNH endonuclease; KEGG: noc:Noc_1298 hypothetical protein; HNH endonuclease 2588845 8917512 Nhal_2512 Nitrosococcus halophilus Nc4 HNH endonuclease YP_003527984.1 2588471 D 472759 CDS YP_003527985.1 292492546 8917513 complement(2588988..2589518) 1 NC_013960.1 PFAM: SEC-C motif domain protein; KEGG: noc:Noc_1299 sec-C domain-containing protein; SEC-C motif domain-containing protein 2589518 8917513 Nhal_2513 Nitrosococcus halophilus Nc4 SEC-C motif domain-containing protein YP_003527985.1 2588988 R 472759 CDS YP_003527986.1 292492547 8917514 2589749..2592064 1 NC_013960.1 KEGG: hha:Hhal_0142 hypothetical protein; hypothetical protein 2592064 8917514 Nhal_2514 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527986.1 2589749 D 472759 CDS YP_003527987.1 292492548 8917515 2592061..2592369 1 NC_013960.1 PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: hha:Hhal_0143 heat shock protein DnaJ domain-containing protein; heat shock protein DnaJ domain-containing protein 2592369 8917515 Nhal_2515 Nitrosococcus halophilus Nc4 heat shock protein DnaJ domain-containing protein YP_003527987.1 2592061 D 472759 CDS YP_003527988.1 292492549 8917516 2592389..2593033 1 NC_013960.1 PFAM: GrpE protein; KEGG: hha:Hhal_0144 GrpE protein; GrpE protein 2593033 8917516 Nhal_2516 Nitrosococcus halophilus Nc4 GrpE protein YP_003527988.1 2592389 D 472759 CDS YP_003527989.1 292492550 8917517 2593030..2594805 1 NC_013960.1 PFAM: heat shock protein 70; KEGG: hha:Hhal_0145 heat shock protein 70; heat shock protein 70 2594805 8917517 Nhal_2517 Nitrosococcus halophilus Nc4 heat shock protein 70 YP_003527989.1 2593030 D 472759 CDS YP_003527990.1 292492551 8917518 2594805..2595053 1 NC_013960.1 KEGG: hha:Hhal_0146 hypothetical protein; hypothetical protein 2595053 8917518 Nhal_2518 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527990.1 2594805 D 472759 CDS YP_003527991.1 292492552 8917519 complement(2595298..2595519) 1 NC_013960.1 KEGG: gbm:Gbem_3668 HicB family protein; HicB family protein 2595519 8917519 Nhal_2519 Nitrosococcus halophilus Nc4 HicB family protein YP_003527991.1 2595298 R 472759 CDS YP_003527992.1 292492553 8917520 complement(2595516..2595719) 1 NC_013960.1 PFAM: YcfA family protein; KEGG: noc:Noc_0412 hypothetical protein; YcfA family protein 2595719 8917520 Nhal_2520 Nitrosococcus halophilus Nc4 YcfA family protein YP_003527992.1 2595516 R 472759 CDS YP_003527993.1 292492554 8917521 complement(2595884..2596066) 1 NC_013960.1 TIGRFAM: addiction module antidote protein, HigA family; KEGG: noc:Noc_0437 plasmid maintenance system antidote protein; HigA family addiction module antidote protein 2596066 8917521 Nhal_2521 Nitrosococcus halophilus Nc4 HigA family addiction module antidote protein YP_003527993.1 2595884 R 472759 CDS YP_003527994.1 292492555 8917523 complement(2596168..2596473) 1 NC_013960.1 KEGG: bpa:BPP2999 DNA-binding protein; DNA-binding protein 2596473 8917523 Nhal_2523 Nitrosococcus halophilus Nc4 DNA-binding protein YP_003527994.1 2596168 R 472759 CDS YP_003527995.1 292492556 8917525 complement(2598459..2598707) 1 NC_013960.1 hypothetical protein 2598707 8917525 Nhal_2525 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527995.1 2598459 R 472759 CDS YP_003527996.1 292492557 8917526 complement(2598715..2598885) 1 NC_013960.1 KEGG: afe:Lferr_0673 hypothetical protein; hypothetical protein 2598885 8917526 Nhal_2526 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527996.1 2598715 R 472759 CDS YP_003527997.1 292492558 8917527 complement(2598882..2599508) 1 NC_013960.1 KEGG: tgr:Tgr7_1724 CopG family protein; hypothetical protein 2599508 8917527 Nhal_2527 Nitrosococcus halophilus Nc4 hypothetical protein YP_003527997.1 2598882 R 472759 CDS YP_003527998.1 292492559 8917530 2600725..2600949 1 NC_013960.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: gme:Gmet_A3570 CopG-like DNA-binding protein; CopG domain-containing protein DNA-binding domain-containing protein 2600949 8917530 Nhal_2530 Nitrosococcus halophilus Nc4 CopG domain-containing protein DNA-binding domain-containing protein YP_003527998.1 2600725 D 472759 CDS YP_003527999.1 292492560 8917531 2600933..2601205 1 NC_013960.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: gme:Gmet_A3569 addiction module toxin, RelE/StbE; RelE/StbE family addiction module toxin 2601205 8917531 Nhal_2531 Nitrosococcus halophilus Nc4 RelE/StbE family addiction module toxin YP_003527999.1 2600933 D 472759 CDS YP_003528000.1 292492561 8917533 2602147..2602287 1 NC_013960.1 hypothetical protein 2602287 8917533 Nhal_2533 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528000.1 2602147 D 472759 CDS YP_003528001.1 292492562 8917534 complement(2602381..2603052) 1 NC_013960.1 KEGG: mca:MCA1904 lipoprotein; hypothetical protein 2603052 8917534 Nhal_2534 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528001.1 2602381 R 472759 CDS YP_003528002.1 292492563 8917535 complement(2603191..2603976) 1 NC_013960.1 hypothetical protein 2603976 8917535 Nhal_2535 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528002.1 2603191 R 472759 CDS YP_003528003.1 292492564 8917536 complement(2604035..2604361) 1 NC_013960.1 hypothetical protein 2604361 8917536 Nhal_2536 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528003.1 2604035 R 472759 CDS YP_003528004.1 292492565 8917537 complement(2605018..2606439) 1 NC_013960.1 PFAM: PhoH family protein; SMART: nucleotide binding protein PINc; KEGG: noc:Noc_1210 PhoH-like protein; PhoH family protein 2606439 8917537 Nhal_2537 Nitrosococcus halophilus Nc4 PhoH family protein YP_003528004.1 2605018 R 472759 CDS YP_003528005.1 292492566 8917538 2606668..2610363 1 NC_013960.1 TIGRFAM: methionine synthase; PFAM: homocysteine S-methyltransferase; methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; dihydropteroate synthase DHPS; Vitamin B12 dependent methionine synthase activation region; KEGG: noc:Noc_1206 B12-dependent methionine synthase; methionine synthase 2610363 8917538 Nhal_2538 Nitrosococcus halophilus Nc4 methionine synthase YP_003528005.1 2606668 D 472759 CDS YP_003528006.1 292492567 8917539 2610547..2611815 1 NC_013960.1 TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: noc:Noc_1378 isocitrate dehydrogenase NADP-dependent; isocitrate dehydrogenase, NADP-dependent 2611815 8917539 Nhal_2539 Nitrosococcus halophilus Nc4 isocitrate dehydrogenase, NADP-dependent YP_003528006.1 2610547 D 472759 CDS YP_003528007.1 292492568 8917540 2611883..2613070 1 NC_013960.1 PFAM: methyltransferase type 12; methyltransferase type 11; KEGG: noc:Noc_1379 hypothetical protein; type 12 methyltransferase 2613070 8917540 Nhal_2540 Nitrosococcus halophilus Nc4 type 12 methyltransferase YP_003528007.1 2611883 D 472759 CDS YP_003528008.1 292492569 8917541 2613446..2613763 1 NC_013960.1 KEGG: noc:Noc_2735 hypothetical protein; hypothetical protein 2613763 8917541 Nhal_2541 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528008.1 2613446 D 472759 CDS YP_003528009.1 292492570 8917542 complement(2613792..2613944) 1 NC_013960.1 hypothetical protein 2613944 8917542 Nhal_2542 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528009.1 2613792 R 472759 CDS YP_003528010.1 292492571 8917543 complement(2613995..2615188) 1 NC_013960.1 PFAM: glycoside hydrolase family 57; KEGG: noc:Noc_2734 glycoside hydrolase family protein; glycoside hydrolase family protein 2615188 8917543 Nhal_2543 Nitrosococcus halophilus Nc4 glycoside hydrolase family protein YP_003528010.1 2613995 R 472759 CDS YP_003528011.1 292492572 8917544 complement(2615236..2616837) 1 NC_013960.1 KEGG: noc:Noc_2733 hypothetical protein; hypothetical protein 2616837 8917544 Nhal_2544 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528011.1 2615236 R 472759 CDS YP_003528012.1 292492573 8917545 complement(2616931..2617053) 1 NC_013960.1 hypothetical protein 2617053 8917545 Nhal_2545 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528012.1 2616931 R 472759 CDS YP_003528013.1 292492574 8917546 complement(2617099..2618166) 1 NC_013960.1 PFAM: methionine synthase vitamin-B12 independent; KEGG: glo:Glov_3721 methionine synthase vitamin-B12 independent; methionine synthase vitamin-B12 independent 2618166 8917546 Nhal_2546 Nitrosococcus halophilus Nc4 methionine synthase vitamin-B12 independent YP_003528013.1 2617099 R 472759 CDS YP_003528014.1 292492575 8917547 2618423..2620684 1 NC_013960.1 KEGG: hch:HCH_03963 hypothetical protein; hypothetical protein 2620684 8917547 Nhal_2547 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528014.1 2618423 D 472759 CDS YP_003528015.1 292492576 8917548 2620681..2621964 1 NC_013960.1 PFAM: glycosyl transferase group 1; KEGG: pca:Pcar_2860 glycosyltransferase; group 1 glycosyl transferase 2621964 8917548 Nhal_2548 Nitrosococcus halophilus Nc4 group 1 glycosyl transferase YP_003528015.1 2620681 D 472759 CDS YP_003528016.1 292492577 8917549 complement(2622104..2622604) 1 NC_013960.1 PFAM: heat shock protein Hsp20; KEGG: noc:Noc_2731 heat shock protein HSP20; heat shock protein Hsp20 2622604 8917549 Nhal_2549 Nitrosococcus halophilus Nc4 heat shock protein Hsp20 YP_003528016.1 2622104 R 472759 CDS YP_003528017.1 292492578 8917550 complement(2622674..2623120) 1 NC_013960.1 PFAM: heat shock protein Hsp20; KEGG: noc:Noc_2730 heat shock protein HSP20; heat shock protein Hsp20 2623120 8917550 Nhal_2550 Nitrosococcus halophilus Nc4 heat shock protein Hsp20 YP_003528017.1 2622674 R 472759 CDS YP_003528018.1 292492579 8917552 complement(2624655..2626562) 1 NC_013960.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_2729 ABC transporter ATPase; ABC transporter 2626562 8917552 Nhal_2552 Nitrosococcus halophilus Nc4 ABC transporter YP_003528018.1 2624655 R 472759 CDS YP_003528019.1 292492580 8917553 2626647..2627054 1 NC_013960.1 KEGG: noc:Noc_2728 protein-methionine-S-oxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: methionine sulfoxide reductase B; methionine-R-sulfoxide reductase 2627054 8917553 Nhal_2553 Nitrosococcus halophilus Nc4 methionine-R-sulfoxide reductase YP_003528019.1 2626647 D 472759 CDS YP_003528020.1 292492581 8917554 2627092..2628108 1 NC_013960.1 PFAM: ApbE family lipoprotein; KEGG: noc:Noc_2727 ApbE-like lipoprotein; ApbE family lipoprotein 2628108 8917554 Nhal_2554 Nitrosococcus halophilus Nc4 ApbE family lipoprotein YP_003528020.1 2627092 D 472759 CDS YP_003528021.1 292492582 8917555 2628240..2628959 1 NC_013960.1 KEGG: noc:Noc_2725 hypothetical protein; hypothetical protein 2628959 8917555 Nhal_2555 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528021.1 2628240 D 472759 CDS YP_003528022.1 292492583 8917556 complement(2628999..2629433) 1 NC_013960.1 KEGG: noc:Noc_2724 hypothetical protein; hypothetical protein 2629433 8917556 Nhal_2556 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528022.1 2628999 R 472759 CDS YP_003528023.1 292492584 8917557 2629645..2630529 1 NC_013960.1 TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: noc:Noc_2719 ribonuclease BN; ribonuclease BN 2630529 8917557 Nhal_2557 Nitrosococcus halophilus Nc4 ribonuclease BN YP_003528023.1 2629645 D 472759 CDS YP_003528024.1 292492585 8917558 2630544..2631662 1 NC_013960.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: sucrose-6F-phosphate phosphohydrolase; protein of unknown function DUF709; haloacid dehalogenase type 3; KEGG: noc:Noc_2718 HAD family hydrolase; HAD-superfamily hydrolase 2631662 8917558 Nhal_2558 Nitrosococcus halophilus Nc4 HAD-superfamily hydrolase YP_003528024.1 2630544 D 472759 CDS YP_003528025.1 292492586 8917559 2631916..2632524 1 NC_013960.1 PFAM: hypothetical protein; SMART: WD-40 repeat protein; KEGG: WD40 repeat; hypothetical protein 2632524 8917559 Nhal_2559 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528025.1 2631916 D 472759 CDS YP_003528026.1 292492587 8917560 2632639..2633388 1 NC_013960.1 hypothetical protein 2633388 8917560 Nhal_2560 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528026.1 2632639 D 472759 CDS YP_003528027.1 292492588 8917561 2633391..2634281 1 NC_013960.1 PFAM: MscS Mechanosensitive ion channel; KEGG: vha:VIBHAR_02267 hypothetical protein; mechanosensitive ion channel MscS 2634281 8917561 Nhal_2561 Nitrosococcus halophilus Nc4 mechanosensitive ion channel MscS YP_003528027.1 2633391 D 472759 CDS YP_003528028.1 292492589 8917562 2634330..2634431 1 NC_013960.1 hypothetical protein 2634431 8917562 Nhal_2562 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528028.1 2634330 D 472759 CDS YP_003528029.1 292492590 8917563 2634452..2635855 1 NC_013960.1 KEGG: rec:RHECIAT_PB0000011 hypothetical protein; hypothetical protein 2635855 8917563 Nhal_2563 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528029.1 2634452 D 472759 CDS YP_003528030.1 292492591 8917564 complement(2636035..2636523) 1 NC_013960.1 PFAM: protein of unknown function DUF411; KEGG: noc:Noc_0535 hypothetical protein; hypothetical protein 2636523 8917564 Nhal_2564 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528030.1 2636035 R 472759 CDS YP_003528031.1 292492592 8917565 complement(2636813..2638015) 1 NC_013960.1 TIGRFAM: TraB family protein; PFAM: TraB determinant protein; KEGG: noc:Noc_0536 pheromone shutdown protein; TraB family protein 2638015 8917565 Nhal_2565 Nitrosococcus halophilus Nc4 TraB family protein YP_003528031.1 2636813 R 472759 CDS YP_003528032.1 292492593 8917566 complement(2638127..2639095) 1 NC_013960.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: noc:Noc_0537 sigma-54 specific transcriptional regulator, fis-type; Fis family transcriptional regulator 2639095 8917566 Nhal_2566 Nitrosococcus halophilus Nc4 Fis family transcriptional regulator YP_003528032.1 2638127 R 472759 CDS YP_003528033.1 292492594 8917567 complement(2639174..2639887) 1 NC_013960.1 KEGG: noc:Noc_0538 hypothetical protein; hypothetical protein 2639887 8917567 Nhal_2567 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528033.1 2639174 R 472759 CDS YP_003528034.1 292492595 8917568 2640134..2640889 1 NC_013960.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_0539 ABC transporter ATPase; ABC transporter 2640889 8917568 Nhal_2568 Nitrosococcus halophilus Nc4 ABC transporter YP_003528034.1 2640134 D 472759 CDS YP_003528035.1 292492596 8917569 2640867..2642372 1 NC_013960.1 PFAM: substrate-binding region of ABC-type glycine betaine transporter; binding-protein-dependent transporters inner membrane component; KEGG: noc:Noc_0540 ABC transporter inner membrane/substrate-binding proteins; glycine/betaine ABC transporter substrate-binding protein 2642372 8917569 Nhal_2569 Nitrosococcus halophilus Nc4 glycine/betaine ABC transporter substrate-binding protein YP_003528035.1 2640867 D 472759 CDS YP_003528036.1 292492597 8917570 2642531..2644690 1 NC_013960.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: noc:Noc_0541 TonB-dependent receptor; TonB-dependent receptor 2644690 8917570 Nhal_2570 Nitrosococcus halophilus Nc4 TonB-dependent receptor YP_003528036.1 2642531 D 472759 CDS YP_003528037.1 292492598 8917571 2644795..2645976 1 NC_013960.1 PFAM: glycosyl transferase group 1; KEGG: tgr:Tgr7_1999 glycosyl transferase group 1; group 1 glycosyl transferase 2645976 8917571 Nhal_2571 Nitrosococcus halophilus Nc4 group 1 glycosyl transferase YP_003528037.1 2644795 D 472759 CDS YP_003528038.1 292492599 8917572 2646060..2647481 1 NC_013960.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: xca:xccb100_1378 hypothetical protein; peptidase M20 2647481 8917572 Nhal_2572 Nitrosococcus halophilus Nc4 peptidase M20 YP_003528038.1 2646060 D 472759 CDS YP_003528039.1 292492600 8917573 2647574..2649121 1 NC_013960.1 PFAM: peptidase M48 Ste24p; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: noc:Noc_0402 peptidase M48, Ste24p; peptidase M48 Ste24p 2649121 8917573 Nhal_2573 Nitrosococcus halophilus Nc4 peptidase M48 Ste24p YP_003528039.1 2647574 D 472759 CDS YP_003528040.1 292492601 8917574 2649138..2650172 1 NC_013960.1 PFAM: metallophosphoesterase; KEGG: noc:Noc_0403 metallophosphoesterase; metallophosphoesterase 2650172 8917574 Nhal_2574 Nitrosococcus halophilus Nc4 metallophosphoesterase YP_003528040.1 2649138 D 472759 CDS YP_003528041.1 292492602 8917575 complement(2650174..2650752) 1 NC_013960.1 PFAM: protein of unknown function DUF46; KEGG: noc:Noc_0421 hypothetical protein; hypothetical protein 2650752 8917575 Nhal_2575 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528041.1 2650174 R 472759 CDS YP_003528042.1 292492603 8917576 complement(2651135..2651938) 1 NC_013960.1 PFAM: protein of unknown function DUF980; KEGG: noc:Noc_0422 hypothetical protein; hypothetical protein 2651938 8917576 Nhal_2576 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528042.1 2651135 R 472759 CDS YP_003528043.1 292492604 8917577 complement(2651964..2652341) 1 NC_013960.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: gur:Gura_3932 helix-turn-helix domain-containing protein; hypothetical protein 2652341 8917577 Nhal_2577 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528043.1 2651964 R 472759 CDS YP_003528044.1 292492605 8917578 complement(2652425..2654914) 1 NC_013960.1 PFAM: protein of unknown function DUF214; KEGG: noc:Noc_0427 hypothetical protein; hypothetical protein 2654914 8917578 Nhal_2578 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528044.1 2652425 R 472759 CDS YP_003528045.1 292492606 8917579 complement(2655004..2655684) 1 NC_013960.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_0428 ABC transporter ATPase; ABC transporter 2655684 8917579 Nhal_2579 Nitrosococcus halophilus Nc4 ABC transporter YP_003528045.1 2655004 R 472759 CDS YP_003528046.1 292492607 8917580 2655725..2656306 1 NC_013960.1 PFAM: lipolytic protein G-D-S-L family; KEGG: noc:Noc_0429 arylesterase; arylesterase 2656306 8917580 Nhal_2580 Nitrosococcus halophilus Nc4 arylesterase YP_003528046.1 2655725 D 472759 CDS YP_003528047.1 292492608 8917583 2657266..2657424 1 NC_013960.1 PFAM: CopG domain protein DNA-binding domain protein; CopG domain-containing protein DNA-binding domain-containing protein 2657424 8917583 Nhal_2583 Nitrosococcus halophilus Nc4 CopG domain-containing protein DNA-binding domain-containing protein YP_003528047.1 2657266 D 472759 CDS YP_003528048.1 292492609 8917584 complement(2657619..2658296) 1 NC_013960.1 PFAM: peptidylprolyl isomerase FKBP-type; FKBP-type peptidyl-prolyl isomerase domain protein; KEGG: noc:Noc_1219 peptidylprolyl isomerase; peptidylprolyl isomerase 2658296 8917584 Nhal_2584 Nitrosococcus halophilus Nc4 peptidylprolyl isomerase YP_003528048.1 2657619 R 472759 CDS YP_003528049.1 292492610 8917585 2658420..2658986 1 NC_013960.1 PFAM: protein of unknown function DUF99; KEGG: tgr:Tgr7_2677 protein of unknown function DUF99; hypothetical protein 2658986 8917585 Nhal_2585 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528049.1 2658420 D 472759 CDS YP_003528050.1 292492611 8917586 2659435..2660169 1 NC_013960.1 KEGG: noc:Noc_1220 hypothetical protein; hypothetical protein 2660169 8917586 Nhal_2586 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528050.1 2659435 D 472759 CDS YP_003528051.1 292492612 8917587 2660296..2661192 1 NC_013960.1 KEGG: noc:Noc_1221 hypothetical protein; hypothetical protein 2661192 8917587 Nhal_2587 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528051.1 2660296 D 472759 CDS YP_003528052.1 292492613 8917588 2661214..2661681 1 NC_013960.1 KEGG: noc:Noc_1222 hypothetical protein; hypothetical protein 2661681 8917588 Nhal_2588 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528052.1 2661214 D 472759 CDS YP_003528053.1 292492614 8917589 2661817..2662332 1 NC_013960.1 PFAM: redoxin; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: noc:Noc_1223 hypothetical protein; redoxin 2662332 8917589 Nhal_2589 Nitrosococcus halophilus Nc4 redoxin YP_003528053.1 2661817 D 472759 CDS YP_003528054.1 292492615 8917590 2662458..2662706 1 NC_013960.1 KEGG: sde:Sde_1565 arginine decarboxylase; arginine decarboxylase 2662706 8917590 Nhal_2590 Nitrosococcus halophilus Nc4 arginine decarboxylase YP_003528054.1 2662458 D 472759 CDS YP_003528055.1 292492616 8917591 2662669..2665251 1 NC_013960.1 KEGG: noc:Noc_1224 hypothetical protein; hypothetical protein 2665251 8917591 Nhal_2591 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528055.1 2662669 D 472759 CDS YP_003528056.1 292492617 8917592 2665332..2666300 1 NC_013960.1 PFAM: ApbE family lipoprotein; KEGG: noc:Noc_1225 ApbE-like lipoprotein; ApbE family lipoprotein 2666300 8917592 Nhal_2592 Nitrosococcus halophilus Nc4 ApbE family lipoprotein YP_003528056.1 2665332 D 472759 CDS YP_003528057.1 292492618 8917593 2666290..2667138 1 NC_013960.1 PFAM: ABC transporter; KEGG: noc:Noc_1227 ABC-type polysaccharide/polyol phosphate export systems permease; sugar ABC transporter permease 2667138 8917593 Nhal_2593 Nitrosococcus halophilus Nc4 sugar ABC transporter permease YP_003528057.1 2666290 D 472759 CDS YP_003528058.1 292492619 8917594 2667150..2668385 1 NC_013960.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_1228 ABC transporter ATPase; ABC transporter 2668385 8917594 Nhal_2594 Nitrosococcus halophilus Nc4 ABC transporter YP_003528058.1 2667150 D 472759 CDS YP_003528059.1 292492620 8917595 2668389..2669000 1 NC_013960.1 KEGG: noc:Noc_1229 hypothetical protein; hypothetical protein 2669000 8917595 Nhal_2595 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528059.1 2668389 D 472759 CDS YP_003528060.1 292492621 8917596 2669015..2669641 1 NC_013960.1 KEGG: noc:Noc_1230 hypothetical protein; hypothetical protein 2669641 8917596 Nhal_2596 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528060.1 2669015 D 472759 CDS YP_003528061.1 292492622 8917597 2669638..2670345 1 NC_013960.1 KEGG: noc:Noc_1231 hypothetical protein; hypothetical protein 2670345 8917597 Nhal_2597 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528061.1 2669638 D 472759 CDS YP_003528062.1 292492623 8917598 2670345..2673476 1 NC_013960.1 PFAM: glycosyl transferase family 2; methyltransferase type 12; methyltransferase type 11; sulfotransferase; methionine biosynthesis MetW protein; KEGG: noc:Noc_1232 glycosyl transferase; family 2 glycosyl transferase 2673476 8917598 Nhal_2598 Nitrosococcus halophilus Nc4 family 2 glycosyl transferase YP_003528062.1 2670345 D 472759 CDS YP_003528063.1 292492624 8917599 2673469..2674311 1 NC_013960.1 PFAM: glycosyl transferase family 2; KEGG: noc:Noc_1233 glycosyl transferase; family 2 glycosyl transferase 2674311 8917599 Nhal_2599 Nitrosococcus halophilus Nc4 family 2 glycosyl transferase YP_003528063.1 2673469 D 472759 CDS YP_003528064.1 292492625 8917600 2674341..2675081 1 NC_013960.1 PFAM: glycosyl transferase family 2; KEGG: noc:Noc_1235 glycosyl transferase; family 2 glycosyl transferase 2675081 8917600 Nhal_2600 Nitrosococcus halophilus Nc4 family 2 glycosyl transferase YP_003528064.1 2674341 D 472759 CDS YP_003528065.1 292492626 8917601 2675146..2676279 1 NC_013960.1 PFAM: glycosyl transferase group 1; KEGG: noc:Noc_1236 glycosyl transferase, group 1; group 1 glycosyl transferase 2676279 8917601 Nhal_2601 Nitrosococcus halophilus Nc4 group 1 glycosyl transferase YP_003528065.1 2675146 D 472759 CDS YP_003528066.1 292492627 8917602 2676699..2677343 1 NC_013960.1 KEGG: noc:Noc_1237 chaperone protein HtpG; chaperone protein HtpG 2677343 8917602 Nhal_2602 Nitrosococcus halophilus Nc4 chaperone protein HtpG YP_003528066.1 2676699 D 472759 CDS YP_003528067.1 292492628 8917603 2677358..2680336 1 NC_013960.1 KEGG: noc:Noc_1238 molybdopterin oxidoreductase, iron-sulfur binding subunit; molybdopterin oxidoreductase, iron-sulfur binding subunit 2680336 8917603 Nhal_2603 Nitrosococcus halophilus Nc4 molybdopterin oxidoreductase, iron-sulfur binding subunit YP_003528067.1 2677358 D 472759 CDS YP_003528068.1 292492629 8917604 2680339..2681661 1 NC_013960.1 PFAM: polysulphide reductase NrfD; KEGG: noc:Noc_1239 polysulphide reductase, NrfD; polysulfide reductase NrfD 2681661 8917604 Nhal_2604 Nitrosococcus halophilus Nc4 polysulfide reductase NrfD YP_003528068.1 2680339 D 472759 CDS YP_003528069.1 292492630 8917605 2681658..2682287 1 NC_013960.1 KEGG: noc:Noc_1240 transmembrane prediction; hypothetical protein 2682287 8917605 Nhal_2605 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528069.1 2681658 D 472759 CDS YP_003528070.1 292492631 8917606 2682340..2682954 1 NC_013960.1 KEGG: noc:Noc_1241 hypothetical protein; hypothetical protein 2682954 8917606 Nhal_2606 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528070.1 2682340 D 472759 CDS YP_003528071.1 292492632 8917607 2682951..2684123 1 NC_013960.1 KEGG: noc:Noc_1242 hypothetical protein; hypothetical protein 2684123 8917607 Nhal_2607 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528071.1 2682951 D 472759 CDS YP_003528072.1 292492633 8917608 2684113..2684514 1 NC_013960.1 KEGG: noc:Noc_1243 hypothetical protein; hypothetical protein 2684514 8917608 Nhal_2608 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528072.1 2684113 D 472759 CDS YP_003528073.1 292492634 8917609 2684575..2685198 1 NC_013960.1 TIGRFAM: cytochrome C oxidase subunit II; PFAM: cytochrome C oxidase subunit II; KEGG: noc:Noc_1244 cytochrome C oxidase subunit II; cytochrome C oxidase subunit II 2685198 8917609 Nhal_2609 Nitrosococcus halophilus Nc4 cytochrome C oxidase subunit II YP_003528073.1 2684575 D 472759 CDS YP_003528074.1 292492635 8917610 2685228..2686832 1 NC_013960.1 KEGG: noc:Noc_1245 cytochrome C oxidase; TIGRFAM: cytochrome C oxidase subunit I; PFAM: cytochrome C oxidase subunit I; cytochrome C oxidase subunit I 2686832 8917610 Nhal_2610 Nitrosococcus halophilus Nc4 cytochrome C oxidase subunit I YP_003528074.1 2685228 D 472759 CDS YP_003528075.1 292492636 8917611 2686871..2687515 1 NC_013960.1 PFAM: cytochrome C oxidase subunit III; KEGG: noc:Noc_1246 cytochrome/quinol oxidase subunit 3; cytochrome C oxidase subunit III 2687515 8917611 Nhal_2611 Nitrosococcus halophilus Nc4 cytochrome C oxidase subunit III YP_003528075.1 2686871 D 472759 CDS YP_003528076.1 292492637 8917612 2687512..2687835 1 NC_013960.1 TIGRFAM: caa(3)-type oxidase subunit IV; KEGG: noc:Noc_1247 Caa(3)-type oxidase subunit IV; caa(3)-type oxidase subunit IV 2687835 8917612 Nhal_2612 Nitrosococcus halophilus Nc4 caa(3)-type oxidase subunit IV YP_003528076.1 2687512 D 472759 CDS YP_003528077.1 292492638 8917613 complement(2687898..2688236) 1 NC_013960.1 KEGG: noc:Noc_1443 hypothetical protein; hypothetical protein 2688236 8917613 Nhal_2613 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528077.1 2687898 R 472759 CDS YP_003528078.1 292492639 8917614 2688414..2690492 1 NC_013960.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: noc:Noc_1489 TonB-dependent receptor; TonB-dependent receptor 2690492 8917614 Nhal_2614 Nitrosococcus halophilus Nc4 TonB-dependent receptor YP_003528078.1 2688414 D 472759 CDS YP_003528079.1 292492640 8917615 complement(2690673..2691800) 1 NC_013960.1 KEGG: noc:Noc_1491 phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; phospho-2-dehydro-3-deoxyheptonate aldolase 2691800 8917615 Nhal_2615 Nitrosococcus halophilus Nc4 phospho-2-dehydro-3-deoxyheptonate aldolase YP_003528079.1 2690673 R 472759 CDS YP_003528080.1 292492641 8917616 complement(2691882..2693345) 1 NC_013960.1 PFAM: citrate transporter; KEGG: noc:Noc_1492 NhaD family Na(+)/H(+) antiporter; citrate transporter 2693345 8917616 Nhal_2616 Nitrosococcus halophilus Nc4 citrate transporter YP_003528080.1 2691882 R 472759 CDS YP_003528081.1 292492642 8917617 2693529..2695337 1 NC_013960.1 PFAM: peptidase M61 domain protein; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: noc:Noc_1493 peptidase M61; peptidase M61 domain-containing protein 2695337 8917617 Nhal_2617 Nitrosococcus halophilus Nc4 peptidase M61 domain-containing protein YP_003528081.1 2693529 D 472759 CDS YP_003528082.1 292492643 8917619 2696096..2696242 1 NC_013960.1 hypothetical protein 2696242 8917619 Nhal_2619 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528082.1 2696096 D 472759 CDS YP_003528083.1 292492644 8917620 2696715..2697035 1 NC_013960.1 PFAM: small multidrug resistance protein; KEGG: mes:Meso_0982 small multidrug resistance protein; small multidrug resistance protein 2697035 8917620 Nhal_2620 Nitrosococcus halophilus Nc4 small multidrug resistance protein YP_003528083.1 2696715 D 472759 CDS YP_003528084.1 292492645 8917621 2697192..2697335 1 NC_013960.1 hypothetical protein 2697335 8917621 Nhal_2621 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528084.1 2697192 D 472759 CDS YP_003528085.1 292492646 8917622 2697445..2697951 1 NC_013960.1 PFAM: MarR family transcriptional regulator; SMART: MarR family transcriptional regulator; KEGG: bra:BRADO2387 MarR family transcriptional regulator; MarR family transcriptional regulator 2697951 8917622 Nhal_2622 Nitrosococcus halophilus Nc4 MarR family transcriptional regulator YP_003528085.1 2697445 D 472759 CDS YP_003528086.1 292492647 8917623 complement(2698133..2698456) 1 NC_013960.1 PFAM: PemK family protein; KEGG: avn:Avin_36390 PemK-like protein; PemK family protein 2698456 8917623 Nhal_2623 Nitrosococcus halophilus Nc4 PemK family protein YP_003528086.1 2698133 R 472759 CDS YP_003528087.1 292492648 8917624 complement(2698453..2698662) 1 NC_013960.1 KEGG: xcv:XCVc0024 hypothetical protein; hypothetical protein 2698662 8917624 Nhal_2624 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528087.1 2698453 R 472759 CDS YP_003528088.1 292492649 8917625 complement(2698797..2699312) 1 NC_013960.1 TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: noc:Noc_0169 adenine phosphoribosyltransferase; adenine phosphoribosyltransferase 2699312 8917625 Nhal_2625 Nitrosococcus halophilus Nc4 adenine phosphoribosyltransferase YP_003528088.1 2698797 R 472759 CDS YP_003528089.1 292492650 8917626 2699361..2699645 1 NC_013960.1 KEGG: nwi:Nwi_3047 hypothetical protein; hypothetical protein 2699645 8917626 Nhal_2626 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528089.1 2699361 D 472759 CDS YP_003528090.1 292492651 8917627 2699651..2700283 1 NC_013960.1 KEGG: noc:Noc_0170 hypothetical protein; hypothetical protein 2700283 8917627 Nhal_2627 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528090.1 2699651 D 472759 CDS YP_003528091.1 292492652 8917628 2700420..2702960 1 NC_013960.1 KEGG: noc:Noc_0171 DNA gyrase subunit A; TIGRFAM: DNA gyrase subunit alpha; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A; DNA gyrase subunit alpha 2702960 8917628 Nhal_2628 Nitrosococcus halophilus Nc4 DNA gyrase subunit alpha YP_003528091.1 2700420 D 472759 CDS YP_003528092.1 292492653 8917629 2703000..2704082 1 NC_013960.1 KEGG: noc:Noc_0172 phosphoserine aminotransferase; TIGRFAM: phosphoserine aminotransferase; PFAM: aminotransferase class V; phosphoserine aminotransferase 2704082 8917629 Nhal_2629 Nitrosococcus halophilus Nc4 phosphoserine aminotransferase YP_003528092.1 2703000 D 472759 CDS YP_003528093.1 292492654 8917630 2704145..2705308 1 NC_013960.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: noc:Noc_0173 D-isomer specific 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein 2705308 8917630 Nhal_2630 Nitrosococcus halophilus Nc4 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein YP_003528093.1 2704145 D 472759 CDS YP_003528094.1 292492655 8917631 2705387..2706472 1 NC_013960.1 TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; chorismate mutase; KEGG: noc:Noc_0174 chorismate mutase; chorismate mutase 2706472 8917631 Nhal_2631 Nitrosococcus halophilus Nc4 chorismate mutase YP_003528094.1 2705387 D 472759 CDS YP_003528095.1 292492656 8917632 2706494..2707606 1 NC_013960.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: noc:Noc_0175 histidinol-phosphate aminotransferase; histidinol-phosphate aminotransferase 2707606 8917632 Nhal_2632 Nitrosococcus halophilus Nc4 histidinol-phosphate aminotransferase YP_003528095.1 2706494 D 472759 CDS YP_003528096.1 292492657 8917633 2707603..2708463 1 NC_013960.1 PFAM: prephenate dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; NADP oxidoreductase coenzyme F420-dependent; KEGG: noc:Noc_0176 prephenate dehydrogenase; prephenate dehydrogenase 2708463 8917633 Nhal_2633 Nitrosococcus halophilus Nc4 prephenate dehydrogenase YP_003528096.1 2707603 D 472759 CDS YP_003528097.1 292492658 8917634 2708497..2709828 1 NC_013960.1 TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: noc:Noc_0177 3-phosphoshikimate 1-carboxyvinyltransferase; 3-phosphoshikimate 1-carboxyvinyltransferase 2709828 8917634 Nhal_2634 Nitrosococcus halophilus Nc4 3-phosphoshikimate 1-carboxyvinyltransferase YP_003528097.1 2708497 D 472759 CDS YP_003528098.1 292492659 8917635 2709847..2710518 1 NC_013960.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase; KEGG: noc:Noc_0178 HAD family hydrolase; HAD-superfamily hydrolase 2710518 8917635 Nhal_2635 Nitrosococcus halophilus Nc4 HAD-superfamily hydrolase YP_003528098.1 2709847 D 472759 CDS YP_003528099.1 292492660 8917636 2710612..2711313 1 NC_013960.1 TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; KEGG: noc:Noc_0179 cytidylate kinase; cytidylate kinase 2711313 8917636 Nhal_2636 Nitrosococcus halophilus Nc4 cytidylate kinase YP_003528099.1 2710612 D 472759 CDS YP_003528100.1 292492661 8917637 2711425..2713107 1 NC_013960.1 KEGG: noc:Noc_0180 30S ribosomal protein S1; TIGRFAM: ribosomal protein S1; PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; 30S ribosomal protein S1 2713107 8917637 Nhal_2637 Nitrosococcus halophilus Nc4 30S ribosomal protein S1 YP_003528100.1 2711425 D 472759 CDS YP_003528101.1 292492662 8917638 2713170..2713460 1 NC_013960.1 KEGG: noc:Noc_0181 integration host factor, beta subunit; TIGRFAM: integration host factor subunit beta; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; integration host factor subunit beta 2713460 8917638 Nhal_2638 Nitrosococcus halophilus Nc4 integration host factor subunit beta YP_003528101.1 2713170 D 472759 CDS YP_003528102.1 292492663 8917639 2713495..2713935 1 NC_013960.1 PFAM: protein of unknown function DUF498; KEGG: noc:Noc_0182 hypothetical protein; hypothetical protein 2713935 8917639 Nhal_2639 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528102.1 2713495 D 472759 CDS YP_003528103.1 292492664 8917640 complement(2713964..2714941) 1 NC_013960.1 TIGRFAM: RNA polymerase sigma factor RpoS; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; KEGG: noc:Noc_0183 RpoS; RNA polymerase sigma factor RpoS 2714941 8917640 Nhal_2640 Nitrosococcus halophilus Nc4 RNA polymerase sigma factor RpoS YP_003528103.1 2713964 R 472759 CDS YP_003528104.1 292492665 8917641 complement(2715186..2715524) 1 NC_013960.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: noc:Noc_0184 4Fe-4S ferredoxin iron-sulfur binding; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 2715524 8917641 Nhal_2641 Nitrosococcus halophilus Nc4 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003528104.1 2715186 R 472759 CDS YP_003528105.1 292492666 8917642 2715738..2716031 1 NC_013960.1 PFAM: protein of unknown function DUF1049; KEGG: aeh:Mlg_0933 hypothetical protein; hypothetical protein 2716031 8917642 Nhal_2642 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528105.1 2715738 D 472759 CDS YP_003528106.1 292492667 8917643 2716034..2717197 1 NC_013960.1 SMART: hypothetical protein; KEGG: noc:Noc_0185 hypothetical protein; hypothetical protein 2717197 8917643 Nhal_2643 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528106.1 2716034 D 472759 CDS YP_003528107.1 292492668 8917644 2717322..2717672 1 NC_013960.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: noc:Noc_0186 arsenate reductase; arsenate reductase 2717672 8917644 Nhal_2644 Nitrosococcus halophilus Nc4 arsenate reductase YP_003528107.1 2717322 D 472759 CDS YP_003528108.1 292492669 8917645 2717686..2718282 1 NC_013960.1 TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; KEGG: noc:Noc_0187 flavodoxin/nitric oxide synthase; flavoprotein WrbA 2718282 8917645 Nhal_2645 Nitrosococcus halophilus Nc4 flavoprotein WrbA YP_003528108.1 2717686 D 472759 CDS YP_003528109.1 292492670 8917646 2718331..2719179 1 NC_013960.1 TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein; KEGG: noc:Noc_0188 biotin--acetyl-CoA-carboxylase ligase; biotin/acetyl-CoA-carboxylase ligase 2719179 8917646 Nhal_2646 Nitrosococcus halophilus Nc4 biotin/acetyl-CoA-carboxylase ligase YP_003528109.1 2718331 D 472759 CDS YP_003528110.1 292492671 8917647 2719176..2719976 1 NC_013960.1 TIGRFAM: transcriptional activator, Baf family; PFAM: Bvg accessory factor; KEGG: noc:Noc_0189 pantothenate kinase; Baf family transcriptional activator 2719976 8917647 Nhal_2647 Nitrosococcus halophilus Nc4 Baf family transcriptional activator YP_003528110.1 2719176 D 472759 CDS YP_003528111.1 292492672 8917649 2720162..2721274 1 NC_013960.1 PFAM: protein of unknown function UPF0118; KEGG: noc:Noc_0190 hypothetical protein; hypothetical protein 2721274 8917649 Nhal_2648 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528111.1 2720162 D 472759 CDS YP_003528112.1 292492673 8917650 2721407..2722219 1 NC_013960.1 PFAM: rhodanese; SMART: Rhodanese domain protein; KEGG: noc:Noc_0191 thiosulfate sulfurtransferase; rhodanese 2722219 8917650 Nhal_2649 Nitrosococcus halophilus Nc4 rhodanese YP_003528112.1 2721407 D 472759 CDS YP_003528113.1 292492674 8917651 2722228..2723040 1 NC_013960.1 PFAM: calcineurin phosphoesterase; metallophosphoesterase; KEGG: noc:Noc_0192 metallophosphoesterase; calcineurin phosphoesterase 2723040 8917651 Nhal_2650 Nitrosococcus halophilus Nc4 calcineurin phosphoesterase YP_003528113.1 2722228 D 472759 CDS YP_003528114.1 292492675 8917652 2723147..2723560 1 NC_013960.1 PFAM: NUDIX hydrolase; KEGG: noc:Noc_0193 NUDIX hydrolase; NUDIX hydrolase 2723560 8917652 Nhal_2651 Nitrosococcus halophilus Nc4 NUDIX hydrolase YP_003528114.1 2723147 D 472759 CDS YP_003528115.1 292492676 8917653 2723613..2723858 1 NC_013960.1 KEGG: hch:HCH_04373 hypothetical protein; hypothetical protein 2723858 8917653 Nhal_2652 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528115.1 2723613 D 472759 CDS YP_003528116.1 292492677 8917654 2723871..2724062 1 NC_013960.1 hypothetical protein 2724062 8917654 Nhal_2653 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528116.1 2723871 D 472759 CDS YP_003528117.1 292492678 8917655 complement(2724123..2724866) 1 NC_013960.1 PFAM: stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: noc:Noc_0964 stage II sporulation E; stage II sporulation E family protein 2724866 8917655 Nhal_2654 Nitrosococcus halophilus Nc4 stage II sporulation E family protein YP_003528117.1 2724123 R 472759 CDS YP_003528118.1 292492679 8917656 2725119..2725454 1 NC_013960.1 KEGG: amc:MADE_01093 hypothetical protein; hypothetical protein 2725454 8917656 Nhal_2655 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528118.1 2725119 D 472759 CDS YP_003528119.1 292492680 8917657 2725711..2726475 1 NC_013960.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: noc:Noc_0833 flagellar motor protein PomA; MotA/TolQ/ExbB proton channel 2726475 8917657 Nhal_2656 Nitrosococcus halophilus Nc4 MotA/TolQ/ExbB proton channel YP_003528119.1 2725711 D 472759 CDS YP_003528120.1 292492681 8917658 2726492..2727340 1 NC_013960.1 PFAM: OmpA/MotB domain protein; KEGG: noc:Noc_0834 flagellar motor protein MotB; OmpA/MotB domain-containing protein 2727340 8917658 Nhal_2657 Nitrosococcus halophilus Nc4 OmpA/MotB domain-containing protein YP_003528120.1 2726492 D 472759 CDS YP_003528121.1 292492682 8917659 complement(2727342..2728112) 1 NC_013960.1 KEGG: noc:Noc_0835 hypothetical protein; hypothetical protein 2728112 8917659 Nhal_2658 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528121.1 2727342 R 472759 CDS YP_003528122.1 292492683 8917660 complement(2728109..2729209) 1 NC_013960.1 KEGG: aeh:Mlg_1158 hypothetical protein; hypothetical protein 2729209 8917660 Nhal_2659 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528122.1 2728109 R 472759 CDS YP_003528123.1 292492684 8917661 2729320..2729556 1 NC_013960.1 SMART: zinc finger CDGSH-type domain protein; KEGG: lch:Lcho_0430 zinc finger CDGSH-type domain-containing protein; zinc finger CDGSH-type domain-containing protein 2729556 8917661 Nhal_2660 Nitrosococcus halophilus Nc4 zinc finger CDGSH-type domain-containing protein YP_003528123.1 2729320 D 472759 CDS YP_003528124.1 292492685 8917662 2729602..2729793 1 NC_013960.1 hypothetical protein 2729793 8917662 Nhal_2661 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528124.1 2729602 D 472759 CDS YP_003528125.1 292492686 8917663 complement(2729884..2730675) 1 NC_013960.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: noc:Noc_0836 oxidoreductase FAD/NAD(P)-binding; oxidoreductase FAD/NAD(P)-binding domain-containing protein 2730675 8917663 Nhal_2662 Nitrosococcus halophilus Nc4 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_003528125.1 2729884 R 472759 CDS YP_003528126.1 292492687 8917664 complement(2730825..2731106) 1 NC_013960.1 PFAM: protein of unknown function DUF427; KEGG: noc:Noc_0837 hypothetical protein; hypothetical protein 2731106 8917664 Nhal_2663 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528126.1 2730825 R 472759 CDS YP_003528127.1 292492688 8917665 complement(2731139..2732134) 1 NC_013960.1 PFAM: transporter permease; ABC-3 protein; KEGG: noc:Noc_0838 transporter permease; transporter permease 2732134 8917665 Nhal_2664 Nitrosococcus halophilus Nc4 transporter permease YP_003528127.1 2731139 R 472759 CDS YP_003528128.1 292492689 8917666 complement(2732138..2732917) 1 NC_013960.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_0839 ABC transporter ATPase; ABC transporter 2732917 8917666 Nhal_2665 Nitrosococcus halophilus Nc4 ABC transporter YP_003528128.1 2732138 R 472759 CDS YP_003528129.1 292492690 8917667 complement(2732914..2733834) 1 NC_013960.1 PFAM: periplasmic binding protein; KEGG: noc:Noc_0840 periplasmic binding protein; periplasmic binding protein 2733834 8917667 Nhal_2666 Nitrosococcus halophilus Nc4 periplasmic binding protein YP_003528129.1 2732914 R 472759 CDS YP_003528130.1 292492691 8917668 complement(2733850..2735067) 1 NC_013960.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: noc:Noc_0841 glycolate oxidase iron-sulfur subunit; hypothetical protein 2735067 8917668 Nhal_2667 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528130.1 2733850 R 472759 CDS YP_003528131.1 292492692 8917669 2735183..2736379 1 NC_013960.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: noc:Noc_0842 cystathionine gamma-synthase; methionine gamma-lyase 2736379 8917669 Nhal_2668 Nitrosococcus halophilus Nc4 methionine gamma-lyase YP_003528131.1 2735183 D 472759 CDS YP_003528132.1 292492693 8917670 complement(2736417..2737394) 1 NC_013960.1 PFAM: peptidase S49 domain protein; peptidase S49; KEGG: noc:Noc_0843 periplasmic protease; peptidase S49 domain-containing protein 2737394 8917670 Nhal_2669 Nitrosococcus halophilus Nc4 peptidase S49 domain-containing protein YP_003528132.1 2736417 R 472759 CDS YP_003528133.1 292492694 8917671 complement(2737440..2738510) 1 NC_013960.1 PFAM: FAD linked oxidase; KEGG: noc:Noc_0844 glycolate oxidase FAD binding subunit; FAD linked oxidase 2738510 8917671 Nhal_2670 Nitrosococcus halophilus Nc4 FAD linked oxidase YP_003528133.1 2737440 R 472759 CDS YP_003528134.1 292492695 8917672 complement(2738532..2738735) 1 NC_013960.1 hypothetical protein 2738735 8917672 Nhal_2671 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528134.1 2738532 R 472759 CDS YP_003528135.1 292492696 8917673 2738942..2739463 1 NC_013960.1 KEGG: noc:Noc_0845 hypothetical protein; hypothetical protein 2739463 8917673 Nhal_2672 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528135.1 2738942 D 472759 CDS YP_003528136.1 292492697 8917674 2739846..2743322 1 NC_013960.1 KEGG: noc:Noc_0846 DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III subunit alpha; PFAM: DNA polymerase III subunit alpha; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha 2743322 8917674 Nhal_2673 Nitrosococcus halophilus Nc4 DNA polymerase III subunit alpha YP_003528136.1 2739846 D 472759 CDS YP_003528137.1 292492698 8917675 2743427..2744410 1 NC_013960.1 KEGG: noc:Noc_0847 two component diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein; response regulator receiver; diguanylate cyclase 2744410 8917675 Nhal_2674 Nitrosococcus halophilus Nc4 diguanylate cyclase YP_003528137.1 2743427 D 472759 CDS YP_003528138.1 292492699 8917676 2744495..2745451 1 NC_013960.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, subunit alpha; PFAM: acetyl-CoA carboxylase subunit alpha; KEGG: noc:Noc_0848 acetyl-CoA carboxylase; acetyl-CoA carboxylase, carboxyl transferase subunit alpha 2745451 8917676 Nhal_2675 Nitrosococcus halophilus Nc4 acetyl-CoA carboxylase, carboxyl transferase subunit alpha YP_003528138.1 2744495 D 472759 CDS YP_003528139.1 292492700 8917677 2745461..2746789 1 NC_013960.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; protein of unkown function DUF1946 PP-loop ATpase; KEGG: noc:Noc_0849 tRNA(Ile)-lysidine synthase; tRNA(Ile)-lysidine synthetase 2746789 8917677 Nhal_2676 Nitrosococcus halophilus Nc4 tRNA(Ile)-lysidine synthetase YP_003528139.1 2745461 D 472759 CDS YP_003528140.1 292492701 8917678 2746881..2748527 1 NC_013960.1 KEGG: noc:Noc_0850 CTP synthetase; TIGRFAM: CTP synthase; PFAM: CTP synthase-like; glutamine amidotransferase class-I; CTP synthase 2748527 8917678 Nhal_2677 Nitrosococcus halophilus Nc4 CTP synthase YP_003528140.1 2746881 D 472759 CDS YP_003528141.1 292492702 8917679 2748533..2749369 1 NC_013960.1 TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: noc:Noc_0851 2-dehydro-3-deoxyphosphooctonate aldolase; 2-dehydro-3-deoxyphosphooctonate aldolase 2749369 8917679 Nhal_2678 Nitrosococcus halophilus Nc4 2-dehydro-3-deoxyphosphooctonate aldolase YP_003528141.1 2748533 D 472759 CDS YP_003528142.1 292492703 8917680 2749398..2750678 1 NC_013960.1 KEGG: noc:Noc_0852 phosphopyruvate hydratase; TIGRFAM: enolase; PFAM: enolase; enolase 2750678 8917680 Nhal_2679 Nitrosococcus halophilus Nc4 enolase YP_003528142.1 2749398 D 472759 CDS YP_003528143.1 292492704 8917681 2750699..2750974 1 NC_013960.1 PFAM: septum formation initiator; KEGG: noc:Noc_0853 septum formation initiator; septum formation initiator 2750974 8917681 Nhal_2680 Nitrosococcus halophilus Nc4 septum formation initiator YP_003528143.1 2750699 D 472759 CDS YP_003528144.1 292492705 8917682 2750971..2751675 1 NC_013960.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: noc:Noc_0854 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2751675 8917682 Nhal_2681 Nitrosococcus halophilus Nc4 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_003528144.1 2750971 D 472759 CDS YP_003528145.1 292492706 8917683 2751672..2752145 1 NC_013960.1 KEGG: noc:Noc_0855 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2752145 8917683 Nhal_2682 Nitrosococcus halophilus Nc4 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_003528145.1 2751672 D 472759 CDS YP_003528146.1 292492707 8917684 2752155..2753207 1 NC_013960.1 PFAM: tRNA pseudouridine synthase D TruD; KEGG: noc:Noc_0856 tRNA pseudouridine synthase D; tRNA pseudouridine synthase D TruD 2753207 8917684 Nhal_2683 Nitrosococcus halophilus Nc4 tRNA pseudouridine synthase D TruD YP_003528146.1 2752155 D 472759 CDS YP_003528147.1 292492708 8917685 complement(2753218..2754939) 1 NC_013960.1 KEGG: noc:Noc_0862 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; diguanylate cyclase 2754939 8917685 Nhal_2684 Nitrosococcus halophilus Nc4 diguanylate cyclase YP_003528147.1 2753218 R 472759 CDS YP_003528148.1 292492709 8917686 2755039..2756424 1 NC_013960.1 TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: noc:Noc_0863 uroporphyrin-III C-methyltransferase-like; uroporphyrin-III C-methyltransferase 2756424 8917686 Nhal_2685 Nitrosococcus halophilus Nc4 uroporphyrin-III C-methyltransferase YP_003528148.1 2755039 D 472759 CDS YP_003528149.1 292492710 8917687 complement(2756408..2757241) 1 NC_013960.1 KEGG: noc:Noc_0865 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 2757241 8917687 Nhal_2686 Nitrosococcus halophilus Nc4 nicotinate-nucleotide pyrophosphorylase YP_003528149.1 2756408 R 472759 CDS YP_003528150.1 292492711 8917688 2757338..2757910 1 NC_013960.1 PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: noc:Noc_0866 N-acetyl-anhydromuranmyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase family 2 2757910 8917688 Nhal_2687 Nitrosococcus halophilus Nc4 N-acetylmuramoyl-L-alanine amidase family 2 YP_003528150.1 2757338 D 472759 CDS YP_003528151.1 292492712 8917689 complement(2757907..2758377) 1 NC_013960.1 hypothetical protein 2758377 8917689 Nhal_2688 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528151.1 2757907 R 472759 CDS YP_003528152.1 292492713 8917690 complement(2758467..2759018) 1 NC_013960.1 TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: noc:Noc_0867 cobalamin adenosyltransferase; ATP/cobalamin adenosyltransferase 2759018 8917690 Nhal_2689 Nitrosococcus halophilus Nc4 ATP/cobalamin adenosyltransferase YP_003528152.1 2758467 R 472759 CDS YP_003528153.1 292492714 8917691 2759082..2759399 1 NC_013960.1 TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region; KEGG: noc:Noc_0868 hemimethylated DNA-binding region; hemimethylated DNA binding protein 2759399 8917691 Nhal_2690 Nitrosococcus halophilus Nc4 hemimethylated DNA binding protein YP_003528153.1 2759082 D 472759 CDS YP_003528154.1 292492715 8917692 complement(2759392..2759724) 1 NC_013960.1 KEGG: sde:Sde_1198 hypothetical protein; hypothetical protein 2759724 8917692 Nhal_2691 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528154.1 2759392 R 472759 CDS YP_003528155.1 292492716 8917694 complement(2759864..2760259) 1 NC_013960.1 PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: noc:Noc_0870 RNA-binding S4; RNA-binding S4 domain-containing protein 2760259 8917694 Nhal_2693 Nitrosococcus halophilus Nc4 RNA-binding S4 domain-containing protein YP_003528155.1 2759864 R 472759 CDS YP_003528156.1 292492717 8917695 complement(2760347..2761345) 1 NC_013960.1 PFAM: alpha/beta hydrolase fold; KEGG: noc:Noc_0872 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2761345 8917695 Nhal_2694 Nitrosococcus halophilus Nc4 alpha/beta hydrolase fold protein YP_003528156.1 2760347 R 472759 CDS YP_003528157.1 292492718 8917696 complement(2761353..2763320) 1 NC_013960.1 TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: noc:Noc_0873 acetyl-CoA synthetase; acetate/CoA ligase 2763320 8917696 Nhal_2695 Nitrosococcus halophilus Nc4 acetate/CoA ligase YP_003528157.1 2761353 R 472759 CDS YP_003528158.1 292492719 8917697 2763884..2764483 1 NC_013960.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: noc:Noc_0878 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 2764483 8917697 Nhal_2696 Nitrosococcus halophilus Nc4 alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen YP_003528158.1 2763884 D 472759 CDS YP_003528159.1 292492720 8917698 2764561..2764845 1 NC_013960.1 KEGG: noc:Noc_3005 hypothetical protein; hypothetical protein 2764845 8917698 Nhal_2697 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528159.1 2764561 D 472759 CDS YP_003528160.1 292492721 8917699 complement(2764911..2765348) 1 NC_013960.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: noc:Noc_0879 suppressor protein DksA; RNA polymerase-binding protein DksA 2765348 8917699 Nhal_2698 Nitrosococcus halophilus Nc4 RNA polymerase-binding protein DksA YP_003528160.1 2764911 R 472759 CDS YP_003528161.1 292492722 8917700 2765726..2766496 1 NC_013960.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: noc:Noc_0880 HAD family hydrolase; HAD-superfamily hydrolase 2766496 8917700 Nhal_2699 Nitrosococcus halophilus Nc4 HAD-superfamily hydrolase YP_003528161.1 2765726 D 472759 CDS YP_003528162.1 292492723 8917701 2766493..2767653 1 NC_013960.1 PFAM: aminotransferase class I and II; KEGG: noc:Noc_0881 hypothetical protein; class I and II aminotransferase 2767653 8917701 Nhal_2700 Nitrosococcus halophilus Nc4 class I and II aminotransferase YP_003528162.1 2766493 D 472759 CDS YP_003528163.1 292492724 8917702 complement(2767714..2768457) 1 NC_013960.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: hypothetical protein; type 11 methyltransferase 2768457 8917702 Nhal_2701 Nitrosococcus halophilus Nc4 type 11 methyltransferase YP_003528163.1 2767714 R 472759 CDS YP_003528164.1 292492725 8917703 complement(2768472..2769218) 1 NC_013960.1 KEGG: bxe:Bxe_C0064 polar amino acid ABC transporter ATPase; TIGRFAM: ectoine/hydroxyectoine ABC transporter ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA; ectoine/hydroxyectoine ABC transporter ATP-binding protein 2769218 8917703 Nhal_2702 Nitrosococcus halophilus Nc4 ectoine/hydroxyectoine ABC transporter ATP-binding protein YP_003528164.1 2768472 R 472759 CDS YP_003528165.1 292492726 8917704 complement(2769256..2769909) 1 NC_013960.1 TIGRFAM: ectoine/hydroxyectoine ABC transporter permease protein EhuD; polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: bbr:BB2162 inner membrane component of binding-protein-dependent transporter; ectoine/hydroxyectoine ABC transporter permease EhuD 2769909 8917704 Nhal_2703 Nitrosococcus halophilus Nc4 ectoine/hydroxyectoine ABC transporter permease EhuD YP_003528165.1 2769256 R 472759 CDS YP_003528166.1 292492727 8917705 complement(2769913..2770557) 1 NC_013960.1 TIGRFAM: ectoine/hydroxyectoine ABC transporter permease protein EhuC; polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: bbr:BB2161 inner membrane component of binding-protein-dependent transporter; ectoine/hydroxyectoine ABC transporter permease EhuC 2770557 8917705 Nhal_2704 Nitrosococcus halophilus Nc4 ectoine/hydroxyectoine ABC transporter permease EhuC YP_003528166.1 2769913 R 472759 CDS YP_003528167.1 292492728 8917706 complement(2770596..2771510) 1 NC_013960.1 KEGG: bpt:Bpet2825 extracellular solute-binding protein; TIGRFAM: ectoine/hydroxyectoine ABC transporter solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ectoine/hydroxyectoine ABC transporter solute-binding protein 2771510 8917706 Nhal_2705 Nitrosococcus halophilus Nc4 ectoine/hydroxyectoine ABC transporter solute-binding protein YP_003528167.1 2770596 R 472759 CDS YP_003528168.1 292492729 8917707 complement(2771539..2772447) 1 NC_013960.1 TIGRFAM: ectoine hydroxylase; PFAM: phytanoyl-CoA dioxygenase; KEGG: noc:Noc_1560 phytanoyl-CoA dioxygenase; ectoine hydroxylase 2772447 8917707 Nhal_2706 Nitrosococcus halophilus Nc4 ectoine hydroxylase YP_003528168.1 2771539 R 472759 CDS YP_003528169.1 292492730 8917708 complement(2772610..2773944) 1 NC_013960.1 TIGRFAM: diaminobutyrate/2-oxoglutarate aminotransferase; 2,4-diaminobutyrate 4-transaminase; PFAM: aminotransferase class-III; KEGG: noc:Noc_1561 diaminobutyrate--2-oxoglutarate aminotransferase; diaminobutyrate/2-oxoglutarate aminotransferase 2773944 8917708 Nhal_2707 Nitrosococcus halophilus Nc4 diaminobutyrate/2-oxoglutarate aminotransferase YP_003528169.1 2772610 R 472759 CDS YP_003528170.1 292492731 8917709 complement(2774036..2774524) 1 NC_013960.1 KEGG: noc:Noc_1562 proteinase inhibitor I3, Kunitz legume; TIGRFAM: L-2,4-diaminobutyric acid acetyltransferase; PFAM: GCN5-related N-acetyltransferase; L-2,4-diaminobutyric acid acetyltransferase 2774524 8917709 Nhal_2708 Nitrosococcus halophilus Nc4 L-2,4-diaminobutyric acid acetyltransferase YP_003528170.1 2774036 R 472759 CDS YP_003528171.1 292492732 8917710 2775395..2776387 1 NC_013960.1 PFAM: sodium/calcium exchanger membrane region; KEGG: psa:PST_1009 Ca2+/Na+ antiporter; sodium/calcium exchanger membrane protein 2776387 8917710 Nhal_2709 Nitrosococcus halophilus Nc4 sodium/calcium exchanger membrane protein YP_003528171.1 2775395 D 472759 CDS YP_003528172.1 292492733 8917711 complement(2776451..2777971) 1 NC_013960.1 TIGRFAM: sodium/proline symporter; SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: noc:Noc_1575 sodium/proline symporter; sodium/proline symporter 2777971 8917711 Nhal_2710 Nitrosococcus halophilus Nc4 sodium/proline symporter YP_003528172.1 2776451 R 472759 CDS YP_003528173.1 292492734 8917712 complement(2778010..2779107) 1 NC_013960.1 PFAM: ABC transporter; KEGG: noc:Noc_1781 ABC transporter inner membrane subunit; ABC transporter 2779107 8917712 Nhal_2711 Nitrosococcus halophilus Nc4 ABC transporter YP_003528173.1 2778010 R 472759 CDS YP_003528174.1 292492735 8917713 complement(2779115..2780272) 1 NC_013960.1 PFAM: ABC transporter; KEGG: noc:Noc_1780 ABC transporter inner membrane subunit; ABC transporter 2780272 8917713 Nhal_2712 Nitrosococcus halophilus Nc4 ABC transporter YP_003528174.1 2779115 R 472759 CDS YP_003528175.1 292492736 8917714 complement(2780277..2780384) 1 NC_013960.1 hypothetical protein 2780384 8917714 Nhal_2713 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528175.1 2780277 R 472759 CDS YP_003528176.1 292492737 8917715 complement(2780456..2782207) 1 NC_013960.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_1779 ABC transporter ATPase; ABC transporter 2782207 8917715 Nhal_2714 Nitrosococcus halophilus Nc4 ABC transporter YP_003528176.1 2780456 R 472759 CDS YP_003528177.1 292492738 8917716 complement(2782211..2783191) 1 NC_013960.1 PFAM: secretion protein HlyD; KEGG: noc:Noc_1778 secretion protein HlyD; secretion protein HlyD 2783191 8917716 Nhal_2715 Nitrosococcus halophilus Nc4 secretion protein HlyD YP_003528177.1 2782211 R 472759 CDS YP_003528178.1 292492739 8917717 complement(2783309..2783689) 1 NC_013960.1 PFAM: protein of unknown function DUF1555; KEGG: tbd:Tbd_0194 hypothetical protein; hypothetical protein 2783689 8917717 Nhal_2716 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528178.1 2783309 R 472759 CDS YP_003528179.1 292492740 8917720 complement(2785210..2786448) 1 NC_013960.1 PFAM: beta-ketoacyl synthase; KEGG: noc:Noc_1777 beta-ketoacyl synthase; beta-ketoacyl synthase 2786448 8917720 Nhal_2719 Nitrosococcus halophilus Nc4 beta-ketoacyl synthase YP_003528179.1 2785210 R 472759 CDS YP_003528180.1 292492741 8917721 complement(2786615..2787391) 1 NC_013960.1 KEGG: tgr:Tgr7_2642 hypothetical protein; hypothetical protein 2787391 8917721 Nhal_2720 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528180.1 2786615 R 472759 CDS YP_003528181.1 292492742 8917722 complement(2787369..2788220) 1 NC_013960.1 PFAM: protein of unknown function DUF692; KEGG: mca:MCA3108 hypothetical protein; hypothetical protein 2788220 8917722 Nhal_2721 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528181.1 2787369 R 472759 CDS YP_003528182.1 292492743 8917723 2788368..2788589 1 NC_013960.1 hypothetical protein 2788589 8917723 Nhal_2722 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528182.1 2788368 D 472759 CDS YP_003528183.1 292492744 8917724 2788576..2789037 1 NC_013960.1 hypothetical protein 2789037 8917724 Nhal_2723 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528183.1 2788576 D 472759 CDS YP_003528184.1 292492745 8917725 complement(2789102..2789731) 1 NC_013960.1 KEGG: afw:Anae109_4078 membrane protein-like protein; hypothetical protein 2789731 8917725 Nhal_2724 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528184.1 2789102 R 472759 CDS YP_003528185.1 292492746 8917726 complement(2789728..2789910) 1 NC_013960.1 hypothetical protein 2789910 8917726 Nhal_2725 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528185.1 2789728 R 472759 CDS YP_003528186.1 292492747 8917727 2790428..2790655 1 NC_013960.1 KEGG: bac:BamMC406_6741 MazE family transcriptional regulator; MazE family transcriptional regulator 2790655 8917727 Nhal_2726 Nitrosococcus halophilus Nc4 MazE family transcriptional regulator YP_003528186.1 2790428 D 472759 CDS YP_003528187.1 292492748 8917728 2790652..2790969 1 NC_013960.1 PFAM: PemK family protein; KEGG: cti:RALTA_A1745 PemK-like protein; toxin of a toxin-antitoxin system; PemK family protein 2790969 8917728 Nhal_2727 Nitrosococcus halophilus Nc4 PemK family protein YP_003528187.1 2790652 D 472759 CDS YP_003528188.1 292492749 8917730 2791876..2793021 1 NC_013960.1 PFAM: transposase IS4 family protein; KEGG: aby:ABAYE3624 IS4 family transposase; transposase IS4 family protein 2793021 8917730 Nhal_2729 Nitrosococcus halophilus Nc4 transposase IS4 family protein YP_003528188.1 2791876 D 472759 CDS YP_003528189.1 292492750 8917733 2794878..2795015 1 NC_013960.1 hypothetical protein 2795015 8917733 Nhal_2732 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528189.1 2794878 D 472759 CDS YP_003528190.1 292492751 8917734 2795155..2796156 1 NC_013960.1 PFAM: peptidase M28; peptidase M20; KEGG: gur:Gura_1976 peptidase M28; peptidase M28 2796156 8917734 Nhal_2733 Nitrosococcus halophilus Nc4 peptidase M28 YP_003528190.1 2795155 D 472759 CDS YP_003528191.1 292492752 8917736 2796617..2797183 1 NC_013960.1 KEGG: hypothetical protein; hypothetical protein 2797183 8917736 Nhal_2735 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528191.1 2796617 D 472759 CDS YP_003528192.1 292492753 8917737 2797383..2798525 1 NC_013960.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: pin:Ping_3063 transposase, IS605 OrfB family protein; transposase, IS605 OrfB family 2798525 8917737 Nhal_2736 Nitrosococcus halophilus Nc4 transposase, IS605 OrfB family YP_003528192.1 2797383 D 472759 CDS YP_003528193.1 292492754 8917738 join(2799593..2799871,2799871..2800311) 1 NC_013960.1 hypothetical protein 2800311 8917738 Nhal_2737 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528193.1 2799593 D 472759 CDS YP_003528194.1 292492755 8917739 2800519..2801817 1 NC_013960.1 TIGRFAM: glycosyltransferase, MGT family; PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; glycosyltransferase 28 domain; KEGG: xau:Xaut_3579 glycosyl transferase; glycosyltransferase, MGT family 2801817 8917739 Nhal_2738 Nitrosococcus halophilus Nc4 glycosyltransferase, MGT family YP_003528194.1 2800519 D 472759 CDS YP_003528195.1 292492756 8917741 2802568..2802819 1 NC_013960.1 KEGG: noc:Noc_3005 hypothetical protein; hypothetical protein 2802819 8917741 Nhal_2740 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528195.1 2802568 D 472759 CDS YP_003528196.1 292492757 8917743 2803267..2803425 1 NC_013960.1 hypothetical protein 2803425 8917743 Nhal_2742 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528196.1 2803267 D 472759 CDS YP_003528197.1 292492758 8917744 complement(2803431..2803853) 1 NC_013960.1 PFAM: Domain of unknown function DUF1841; KEGG: noc:Noc_1168 hypothetical protein; hypothetical protein 2803853 8917744 Nhal_2743 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528197.1 2803431 R 472759 CDS YP_003528198.1 292492759 8917745 complement(2803857..2804528) 1 NC_013960.1 KEGG: noc:Noc_1169 endonuclease III/Nth; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; iron-sulfur cluster loop; endonuclease III 2804528 8917745 Nhal_2744 Nitrosococcus halophilus Nc4 endonuclease III YP_003528198.1 2803857 R 472759 CDS YP_003528199.1 292492760 8917746 complement(2804544..2805251) 1 NC_013960.1 TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: noc:Noc_1170 SoxR-reducing system protein RsxE; RnfABCDGE type electron transport complex subunit E 2805251 8917746 Nhal_2745 Nitrosococcus halophilus Nc4 RnfABCDGE type electron transport complex subunit E YP_003528199.1 2804544 R 472759 CDS YP_003528200.1 292492761 8917747 complement(2805235..2805861) 1 NC_013960.1 TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: noc:Noc_1171 electron transport complex, RnfABCDGE type, G subunit; RnfABCDGE type electron transport complex subunit G 2805861 8917747 Nhal_2746 Nitrosococcus halophilus Nc4 RnfABCDGE type electron transport complex subunit G YP_003528200.1 2805235 R 472759 CDS YP_003528201.1 292492762 8917748 complement(2805876..2806913) 1 NC_013960.1 TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: noc:Noc_1172 electron transport complex, RnfABCDGE type, D subunit; RnfABCDGE type electron transport complex subunit D 2806913 8917748 Nhal_2747 Nitrosococcus halophilus Nc4 RnfABCDGE type electron transport complex subunit D YP_003528201.1 2805876 R 472759 CDS YP_003528202.1 292492763 8917749 complement(2806948..2808495) 1 NC_013960.1 TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: noc:Noc_1173 electron transport complex protein RnfC; RnfABCDGE type electron transport complex subunit C 2808495 8917749 Nhal_2748 Nitrosococcus halophilus Nc4 RnfABCDGE type electron transport complex subunit C YP_003528202.1 2806948 R 472759 CDS YP_003528203.1 292492764 8917750 complement(2808492..2809121) 1 NC_013960.1 TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Fe-S cluster domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: noc:Noc_1174 electron transport complex, RnfABCDGE type subunit beta; RnfABCDGE type electron transport complex subunit beta 2809121 8917750 Nhal_2749 Nitrosococcus halophilus Nc4 RnfABCDGE type electron transport complex subunit beta YP_003528203.1 2808492 R 472759 CDS YP_003528204.1 292492765 8917751 complement(2809126..2809707) 1 NC_013960.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: noc:Noc_0970 electron transport complex, RnfABCDGE type, subunit alpha; RnfABCDGE type electron transport complex subunit alpha 2809707 8917751 Nhal_2750 Nitrosococcus halophilus Nc4 RnfABCDGE type electron transport complex subunit alpha YP_003528204.1 2809126 R 472759 CDS YP_003528205.1 292492766 8917752 complement(2809723..2811747) 1 NC_013960.1 KEGG: noc:Noc_0971 methionyl-tRNA synthetase; TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase subunit beta; PFAM: tRNA synthetase class I (M); t-RNA-binding domain protein; methionyl-tRNA synthetase 2811747 8917752 Nhal_2751 Nitrosococcus halophilus Nc4 methionyl-tRNA synthetase YP_003528205.1 2809723 R 472759 CDS YP_003528206.1 292492767 8917753 2811936..2813021 1 NC_013960.1 PFAM: protein of unknown function DUF59; KEGG: noc:Noc_0972 hypothetical protein; hypothetical protein 2813021 8917753 Nhal_2752 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528206.1 2811936 D 472759 CDS YP_003528207.1 292492768 8917754 2813108..2813467 1 NC_013960.1 PFAM: DsrE family protein; KEGG: mca:MCA0352 hypothetical protein; DsrE family protein 2813467 8917754 Nhal_2753 Nitrosococcus halophilus Nc4 DsrE family protein YP_003528207.1 2813108 D 472759 CDS YP_003528208.1 292492769 8917755 2813559..2813981 1 NC_013960.1 PFAM: transposase IS200-family protein; KEGG: noc:Noc_0387 transposase IS200; transposase IS200-family protein 2813981 8917755 Nhal_2754 Nitrosococcus halophilus Nc4 transposase IS200-family protein YP_003528208.1 2813559 D 472759 CDS YP_003528209.1 292492770 8917756 2813982..2815103 1 NC_013960.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0388 IS891/IS1136/IS1341 transposase; transposase, IS605 OrfB family 2815103 8917756 Nhal_2755 Nitrosococcus halophilus Nc4 transposase, IS605 OrfB family YP_003528209.1 2813982 D 472759 CDS YP_003528210.1 292492771 8917757 2815372..2815794 1 NC_013960.1 KEGG: noc:Noc_0974 hypothetical protein; hypothetical protein 2815794 8917757 Nhal_2756 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528210.1 2815372 D 472759 CDS YP_003528211.1 292492772 8917758 complement(2815781..2816527) 1 NC_013960.1 KEGG: noc:Noc_0975 hypothetical protein; hypothetical protein 2816527 8917758 Nhal_2757 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528211.1 2815781 R 472759 CDS YP_003528212.1 292492773 8917759 complement(2816564..2818468) 1 NC_013960.1 PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: scl:sce0051 hypothetical protein; CBS domain-containing protein 2818468 8917759 Nhal_2758 Nitrosococcus halophilus Nc4 CBS domain-containing protein YP_003528212.1 2816564 R 472759 CDS YP_003528213.1 292492774 8917760 complement(2818483..2818941) 1 NC_013960.1 PFAM: protein of unknown function DUF1499; KEGG: noc:Noc_0976 hypothetical protein; hypothetical protein 2818941 8917760 Nhal_2759 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528213.1 2818483 R 472759 CDS YP_003528214.1 292492775 8917761 2819686..2820591 1 NC_013960.1 PFAM: 5-nucleotidase; KEGG: noc:Noc_1810 5-nucleotidase; 5'-nucleotidase 2820591 8917761 Nhal_2760 Nitrosococcus halophilus Nc4 5'-nucleotidase YP_003528214.1 2819686 D 472759 CDS YP_003528215.1 292492776 8917762 complement(2820671..2822161) 1 NC_013960.1 PFAM: FAD linked oxidase; KEGG: noc:Noc_0495 D-lactate dehydrogenase (cytochrome); FAD linked oxidase 2822161 8917762 Nhal_2761 Nitrosococcus halophilus Nc4 FAD linked oxidase YP_003528215.1 2820671 R 472759 CDS YP_003528216.1 292492777 8917763 2822232..2823344 1 NC_013960.1 KEGG: noc:Noc_0494 kinase-like; kinase-like protein 2823344 8917763 Nhal_2762 Nitrosococcus halophilus Nc4 kinase-like protein YP_003528216.1 2822232 D 472759 CDS YP_003528217.1 292492778 8917764 2823573..2823683 1 NC_013960.1 hypothetical protein 2823683 8917764 Nhal_2763 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528217.1 2823573 D 472759 CDS YP_003528218.1 292492779 8917765 2823763..2824938 1 NC_013960.1 PFAM: aminotransferase class V; KEGG: noc:Noc_2128 aminotransferase, class V; class V aminotransferase 2824938 8917765 Nhal_2764 Nitrosococcus halophilus Nc4 class V aminotransferase YP_003528218.1 2823763 D 472759 CDS YP_003528219.1 292492780 8917766 2824969..2826015 1 NC_013960.1 KEGG: noc:Noc_2127 hypothetical protein; hypothetical protein 2826015 8917766 Nhal_2765 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528219.1 2824969 D 472759 CDS YP_003528220.1 292492781 8917767 complement(2826025..2827155) 1 NC_013960.1 TIGRFAM: succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: noc:Noc_2126 succinyl-diaminopimelate desuccinylase; succinyl-diaminopimelate desuccinylase 2827155 8917767 Nhal_2766 Nitrosococcus halophilus Nc4 succinyl-diaminopimelate desuccinylase YP_003528220.1 2826025 R 472759 CDS YP_003528221.1 292492782 8917768 complement(2827169..2827990) 1 NC_013960.1 TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; KEGG: noc:Noc_2125 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 2827990 8917768 Nhal_2767 Nitrosococcus halophilus Nc4 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase YP_003528221.1 2827169 R 472759 CDS YP_003528222.1 292492783 8917769 complement(2828013..2829212) 1 NC_013960.1 PFAM: aminotransferase class I and II; KEGG: noc:Noc_2124 hypothetical protein; class I and II aminotransferase 2829212 8917769 Nhal_2768 Nitrosococcus halophilus Nc4 class I and II aminotransferase YP_003528222.1 2828013 R 472759 CDS YP_003528223.1 292492784 8917771 2829841..2830293 1 NC_013960.1 PFAM: protein of unknown function DUF150; KEGG: noc:Noc_2122 hypothetical protein; hypothetical protein 2830293 8917771 Nhal_2769 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528223.1 2829841 D 472759 CDS YP_003528224.1 292492785 8917772 2830338..2831858 1 NC_013960.1 KEGG: noc:Noc_2121 transcription elongation factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: NusA domain protein; RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein; transcription termination factor NusA 2831858 8917772 Nhal_2770 Nitrosococcus halophilus Nc4 transcription termination factor NusA YP_003528224.1 2830338 D 472759 CDS YP_003528225.1 292492786 8917773 2831855..2834494 1 NC_013960.1 TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain protein; Miro domain protein; GTP-binding protein HSR1-related; elongation factor Tu domain 2 protein; Initiation factor 2 associated domain protein; KEGG: noc:Noc_2120 translation initiation factor IF-2; translation initiation factor IF-2 2834494 8917773 Nhal_2771 Nitrosococcus halophilus Nc4 translation initiation factor IF-2 YP_003528225.1 2831855 D 472759 CDS YP_003528226.1 292492787 8917774 2834504..2834887 1 NC_013960.1 TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; KEGG: noc:Noc_2119 ribosome-binding factor A; ribosome-binding factor A 2834887 8917774 Nhal_2772 Nitrosococcus halophilus Nc4 ribosome-binding factor A YP_003528226.1 2834504 D 472759 CDS YP_003528227.1 292492788 8917775 2834924..2835850 1 NC_013960.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase B; KEGG: noc:Noc_2118 tRNA pseudouridine synthase B; tRNA pseudouridine synthase B 2835850 8917775 Nhal_2773 Nitrosococcus halophilus Nc4 tRNA pseudouridine synthase B YP_003528227.1 2834924 D 472759 CDS YP_003528228.1 292492789 8917776 2835979..2836248 1 NC_013960.1 TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; KEGG: noc:Noc_2117 ribosomal protein S15; 30S ribosomal protein S15 2836248 8917776 Nhal_2774 Nitrosococcus halophilus Nc4 30S ribosomal protein S15 YP_003528228.1 2835979 D 472759 CDS YP_003528229.1 292492790 8917777 2836327..2838462 1 NC_013960.1 KEGG: noc:Noc_2116 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; Exoribonuclease, phosphorolytic domain 2; KH type 1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein; polyribonucleotide nucleotidyltransferase 2838462 8917777 Nhal_2775 Nitrosococcus halophilus Nc4 polyribonucleotide nucleotidyltransferase YP_003528229.1 2836327 D 472759 CDS YP_003528230.1 292492791 8917778 2838844..2841366 1 NC_013960.1 KEGG: noc:Noc_2115 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase 2841366 8917778 Nhal_2776 Nitrosococcus halophilus Nc4 glycogen/starch/alpha-glucan phosphorylase YP_003528230.1 2838844 D 472759 CDS YP_003528231.1 292492792 8917779 complement(2841379..2843688) 1 NC_013960.1 PFAM: protein of unknown function DUF1631; KEGG: noc:Noc_2114 hypothetical protein; hypothetical protein 2843688 8917779 Nhal_2777 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528231.1 2841379 R 472759 CDS YP_003528232.1 292492793 8917780 complement(2843865..2844383) 1 NC_013960.1 KEGG: noc:Noc_2113 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; 3-hydroxyacyl-ACP dehydratase 2844383 8917780 Nhal_2778 Nitrosococcus halophilus Nc4 3-hydroxyacyl-ACP dehydratase YP_003528232.1 2843865 R 472759 CDS YP_003528233.1 292492794 8917781 2844553..2845362 1 NC_013960.1 PFAM: protein of unknown function DUF455; KEGG: noc:Noc_2112 hypothetical protein; hypothetical protein 2845362 8917781 Nhal_2779 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528233.1 2844553 D 472759 CDS YP_003528234.1 292492795 8917782 2845592..2846620 1 NC_013960.1 KEGG: noc:Noc_2111 dehydrogenase, E1 component; TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit; PFAM: dehydrogenase E1 component; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 2846620 8917782 Nhal_2780 Nitrosococcus halophilus Nc4 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha YP_003528234.1 2845592 D 472759 CDS YP_003528235.1 292492796 8917783 2846613..2847593 1 NC_013960.1 PFAM: transketolase; transketolase domain protein; KEGG: noc:Noc_2110 pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component; transketolase 2847593 8917783 Nhal_2781 Nitrosococcus halophilus Nc4 transketolase YP_003528235.1 2846613 D 472759 CDS YP_003528236.1 292492797 8917784 2847620..2850313 1 NC_013960.1 PFAM: dehydrogenase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; E3 binding domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: noc:Noc_2109 pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3) component and related enzyme; dehydrogenase 2850313 8917784 Nhal_2782 Nitrosococcus halophilus Nc4 dehydrogenase YP_003528236.1 2847620 D 472759 CDS YP_003528237.1 292492798 8917785 2850366..2851583 1 NC_013960.1 KEGG: noc:Noc_2108 argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: argininosuccinate synthase; argininosuccinate synthase 2851583 8917785 Nhal_2783 Nitrosococcus halophilus Nc4 argininosuccinate synthase YP_003528237.1 2850366 D 472759 CDS YP_003528238.1 292492799 8917786 complement(2851598..2852410) 1 NC_013960.1 PFAM: NolW domain protein; KEGG: noc:Noc_2107 NolW-like; NolW domain-containing protein 2852410 8917786 Nhal_2784 Nitrosococcus halophilus Nc4 NolW domain-containing protein YP_003528238.1 2851598 R 472759 CDS YP_003528239.1 292492800 8917787 complement(2852469..2853836) 1 NC_013960.1 TIGRFAM: adenylosuccinate lyase; PFAM: adenylosuccinate lyase domain protein; fumarate lyase; KEGG: noc:Noc_2106 adenylosuccinate lyase; adenylosuccinate lyase 2853836 8917787 Nhal_2785 Nitrosococcus halophilus Nc4 adenylosuccinate lyase YP_003528239.1 2852469 R 472759 CDS YP_003528240.1 292492801 8917788 2854060..2855010 1 NC_013960.1 KEGG: noc:Noc_2105 hypothetical protein; hypothetical protein 2855010 8917788 Nhal_2786 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528240.1 2854060 D 472759 CDS YP_003528241.1 292492802 8917789 2855394..2857946 1 NC_013960.1 KEGG: noc:Noc_2103 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; TIGRFAM: aconitate hydratase 2; PFAM: Aconitase B, N-terminal; aconitate hydratase domain protein; aconitate hydratase 2 2857946 8917789 Nhal_2787 Nitrosococcus halophilus Nc4 aconitate hydratase 2 YP_003528241.1 2855394 D 472759 CDS YP_003528242.1 292492803 8917790 2858239..2859126 1 NC_013960.1 PFAM: HNH endonuclease; KEGG: mca:MCA0503 hypothetical protein; HNH endonuclease 2859126 8917790 Nhal_2788 Nitrosococcus halophilus Nc4 HNH endonuclease YP_003528242.1 2858239 D 472759 CDS YP_003528243.1 292492804 8917791 2859330..2860004 1 NC_013960.1 PFAM: ThiJ/PfpI domain protein; KEGG: sme:SM_b20212 hypothetical protein; ThiJ/PfpI domain-containing protein 2860004 8917791 Nhal_2789 Nitrosococcus halophilus Nc4 ThiJ/PfpI domain-containing protein YP_003528243.1 2859330 D 472759 CDS YP_003528244.1 292492805 8917792 2860276..2860668 1 NC_013960.1 KEGG: noc:Noc_2043 hypothetical protein; hypothetical protein 2860668 8917792 Nhal_2790 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528244.1 2860276 D 472759 CDS YP_003528245.1 292492806 8917793 2860694..2861554 1 NC_013960.1 PFAM: OmpA/MotB domain protein; KEGG: noc:Noc_2042 OmpA/MotB; OmpA/MotB domain-containing protein 2861554 8917793 Nhal_2791 Nitrosococcus halophilus Nc4 OmpA/MotB domain-containing protein YP_003528245.1 2860694 D 472759 CDS YP_003528246.1 292492807 8917794 complement(2861728..2862369) 1 NC_013960.1 PFAM: protein of unknown function DUF489; KEGG: noc:Noc_2041 hypothetical protein; hypothetical protein 2862369 8917794 Nhal_2792 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528246.1 2861728 R 472759 CDS YP_003528247.1 292492808 8917795 complement(2862366..2863469) 1 NC_013960.1 TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: noc:Noc_2040 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 2863469 8917795 Nhal_2793 Nitrosococcus halophilus Nc4 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_003528247.1 2862366 R 472759 CDS YP_003528248.1 292492809 8917797 2864017..2864232 1 NC_013960.1 hypothetical protein 2864232 8917797 Nhal_2795 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528248.1 2864017 D 472759 CDS YP_003528249.1 292492810 8917798 complement(2864229..2865044) 1 NC_013960.1 PFAM: protein of unknown function DUF198; KEGG: noc:Noc_2039 hypothetical protein; hypothetical protein 2865044 8917798 Nhal_2796 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528249.1 2864229 R 472759 CDS YP_003528250.1 292492811 8917799 complement(2865041..2865430) 1 NC_013960.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: noc:Noc_2038 6-pyruvoyl tetrahydropterin synthase; hypothetical protein 2865430 8917799 Nhal_2797 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528250.1 2865041 R 472759 CDS YP_003528251.1 292492812 8917800 complement(2865485..2866375) 1 NC_013960.1 PFAM: polyprenyl synthetase; KEGG: noc:Noc_2037 polyprenyl synthetase; polyprenyl synthetase 2866375 8917800 Nhal_2798 Nitrosococcus halophilus Nc4 polyprenyl synthetase YP_003528251.1 2865485 R 472759 CDS YP_003528252.1 292492813 8917801 complement(2866377..2866610) 1 NC_013960.1 TIGRFAM: exodeoxyribonuclease VII small subunit; PFAM: exonuclease VII small subunit; KEGG: noc:Noc_2036 exonuclease VII, small subunit; exodeoxyribonuclease VII small subunit 2866610 8917801 Nhal_2799 Nitrosococcus halophilus Nc4 exodeoxyribonuclease VII small subunit YP_003528252.1 2866377 R 472759 CDS YP_003528253.1 292492814 8917802 2866759..2867691 1 NC_013960.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; riboflavin kinase; KEGG: noc:Noc_2035 FMN adenylyltransferase, riboflavin kinase; riboflavin biosynthesis protein RibF 2867691 8917802 Nhal_2800 Nitrosococcus halophilus Nc4 riboflavin biosynthesis protein RibF YP_003528253.1 2866759 D 472759 CDS YP_003528254.1 292492815 8917803 complement(2867898..2868560) 1 NC_013960.1 KEGG: dat:HRM2_22640 TPR domain protein; hypothetical protein 2868560 8917803 Nhal_2801 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528254.1 2867898 R 472759 CDS YP_003528255.1 292492816 8917804 complement(2868702..2869658) 1 NC_013960.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: noc:Noc_2032 glycerate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein 2869658 8917804 Nhal_2802 Nitrosococcus halophilus Nc4 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein YP_003528255.1 2868702 R 472759 CDS YP_003528256.1 292492817 8917805 2869954..2870310 1 NC_013960.1 PFAM: Domain of unknown function DUF1820; KEGG: noc:Noc_2030 hypothetical protein; hypothetical protein 2870310 8917805 Nhal_2803 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528256.1 2869954 D 472759 CDS YP_003528257.1 292492818 8917806 complement(2870314..2870598) 1 NC_013960.1 PFAM: protein of unknown function DUF861 cupin_3; KEGG: mca:MCA0659 hypothetical protein; hypothetical protein 2870598 8917806 Nhal_2804 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528257.1 2870314 R 472759 CDS YP_003528258.1 292492819 8917807 complement(2870591..2870983) 1 NC_013960.1 KEGG: sfu:Sfum_2138 hypothetical protein; hypothetical protein 2870983 8917807 Nhal_2805 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528258.1 2870591 R 472759 CDS YP_003528259.1 292492820 8917809 2872625..2873938 1 NC_013960.1 PFAM: protein of unknown function DUF323; KEGG: noc:Noc_2029 hypothetical protein; hypothetical protein 2873938 8917809 Nhal_2807 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528259.1 2872625 D 472759 CDS YP_003528260.1 292492821 8917810 2873935..2874912 1 NC_013960.1 TIGRFAM: methyltransferase; KEGG: noc:Noc_2028 hypothetical protein; methyltransferase 2874912 8917810 Nhal_2808 Nitrosococcus halophilus Nc4 methyltransferase YP_003528260.1 2873935 D 472759 CDS YP_003528261.1 292492822 8917811 2875029..2876282 1 NC_013960.1 PFAM: glycine hydroxymethyltransferase; KEGG: noc:Noc_2027 glycine hydroxymethyltransferase; glycine hydroxymethyltransferase 2876282 8917811 Nhal_2809 Nitrosococcus halophilus Nc4 glycine hydroxymethyltransferase YP_003528261.1 2875029 D 472759 CDS YP_003528262.1 292492823 8917812 2876297..2876821 1 NC_013960.1 PFAM: ATP-cone domain protein; KEGG: noc:Noc_2026 transcriptional regulator NrdR; ATP-cone domain-containing protein 2876821 8917812 Nhal_2810 Nitrosococcus halophilus Nc4 ATP-cone domain-containing protein YP_003528262.1 2876297 D 472759 CDS YP_003528263.1 292492824 8917813 2876953..2878074 1 NC_013960.1 KEGG: noc:Noc_2025 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding; riboflavin biosynthesis protein RibD 2878074 8917813 Nhal_2811 Nitrosococcus halophilus Nc4 riboflavin biosynthesis protein RibD YP_003528263.1 2876953 D 472759 CDS YP_003528264.1 292492825 8917814 2878133..2878789 1 NC_013960.1 KEGG: noc:Noc_2024 riboflavin synthase subunit alpha; TIGRFAM: riboflavin synthase, subunit alpha; PFAM: Lumazine-binding protein; riboflavin synthase subunit alpha 2878789 8917814 Nhal_2812 Nitrosococcus halophilus Nc4 riboflavin synthase subunit alpha YP_003528264.1 2878133 D 472759 CDS YP_003528265.1 292492826 8917815 2878796..2879902 1 NC_013960.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: noc:Noc_2023 GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase 2879902 8917815 Nhal_2813 Nitrosococcus halophilus Nc4 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_003528265.1 2878796 D 472759 CDS YP_003528266.1 292492827 8917816 2879922..2880524 1 NC_013960.1 PFAM: ribonuclease HII/HIII; KEGG: noc:Noc_2022 ribonuclease H; ribonuclease H 2880524 8917816 Nhal_2814 Nitrosococcus halophilus Nc4 ribonuclease H YP_003528266.1 2879922 D 472759 CDS YP_003528267.1 292492828 8917817 complement(2880799..2881176) 1 NC_013960.1 hypothetical protein 2881176 8917817 Nhal_2815 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528267.1 2880799 R 472759 CDS YP_003528268.1 292492829 8917818 complement(2881233..2881373) 1 NC_013960.1 hypothetical protein 2881373 8917818 Nhal_2816 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528268.1 2881233 R 472759 CDS YP_003528269.1 292492830 8917819 2881405..2882109 1 NC_013960.1 PFAM: Hly-III family protein; KEGG: dat:HRM2_17730 channel protein (hemolysin III family protein); Hly-III family protein 2882109 8917819 Nhal_2817 Nitrosococcus halophilus Nc4 Hly-III family protein YP_003528269.1 2881405 D 472759 CDS YP_003528270.1 292492831 8917820 complement(2882238..2883578) 1 NC_013960.1 TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA; KEGG: avn:Avin_51740 Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA 2883578 8917820 Nhal_2818 Nitrosococcus halophilus Nc4 Na+/H+ antiporter NhaA YP_003528270.1 2882238 R 472759 CDS YP_003528271.1 292492832 8917821 complement(2883678..2883818) 1 NC_013960.1 PFAM: CopG domain protein DNA-binding domain protein; CopG domain-containing protein DNA-binding domain-containing protein 2883818 8917821 Nhal_2819 Nitrosococcus halophilus Nc4 CopG domain-containing protein DNA-binding domain-containing protein YP_003528271.1 2883678 R 472759 CDS YP_003528272.1 292492833 8917822 2883853..2884572 1 NC_013960.1 PFAM: transposase IS891/IS1136/IS1341 family; KEGG: noc:Noc_1184 transposase IS605; transposase IS891/IS1136/IS1341 family 2884572 8917822 Nhal_2820 Nitrosococcus halophilus Nc4 transposase IS891/IS1136/IS1341 family YP_003528272.1 2883853 D 472759 CDS YP_003528273.1 292492834 8917823 complement(2884580..2885803) 1 NC_013960.1 PFAM: transposase mutator type; KEGG: son:SO_0708 transposase mutator family protein; transposase mutator type 2885803 8917823 Nhal_2821 Nitrosococcus halophilus Nc4 transposase mutator type YP_003528273.1 2884580 R 472759 CDS YP_003528274.1 292492835 8917824 complement(2885827..2886099) 1 NC_013960.1 KEGG: hypothetical protein; hypothetical protein 2886099 8917824 Nhal_2822 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528274.1 2885827 R 472759 CDS YP_003528275.1 292492836 8917825 complement(2886305..2886757) 1 NC_013960.1 KEGG: mrd:Mrad2831_4674 hypothetical protein; hypothetical protein 2886757 8917825 Nhal_2823 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528275.1 2886305 R 472759 CDS YP_003528276.1 292492837 8917826 complement(2886991..2887548) 1 NC_013960.1 PFAM: protein of unknown function DUF820; KEGG: hha:Hhal_1924 hypothetical protein; hypothetical protein 2887548 8917826 Nhal_2824 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528276.1 2886991 R 472759 CDS YP_003528277.1 292492838 8917827 2887779..2889407 1 NC_013960.1 TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: noc:Noc_2019 peptide chain release factor 3; peptide chain release factor 3 2889407 8917827 Nhal_2825 Nitrosococcus halophilus Nc4 peptide chain release factor 3 YP_003528277.1 2887779 D 472759 CDS YP_003528278.1 292492839 8917828 complement(2889549..2890868) 1 NC_013960.1 PFAM: Dual specificity protein phosphatase; SMART: Dual specificity protein phosphatase; KEGG: dvm:DvMF_2186 dual specificity protein phosphatase; Dual specificity protein phosphatase 2890868 8917828 Nhal_2826 Nitrosococcus halophilus Nc4 Dual specificity protein phosphatase YP_003528278.1 2889549 R 472759 CDS YP_003528279.1 292492840 8917829 2891485..2892492 1 NC_013960.1 KEGG: neu:NE0117 hypothetical protein; hypothetical protein 2892492 8917829 Nhal_2827 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528279.1 2891485 D 472759 CDS YP_003528280.1 292492841 8917830 complement(2892733..2893956) 1 NC_013960.1 PFAM: transposase mutator type; KEGG: son:SO_0708 transposase mutator family protein; transposase mutator type 2893956 8917830 Nhal_2828 Nitrosococcus halophilus Nc4 transposase mutator type YP_003528280.1 2892733 R 472759 CDS YP_003528281.1 292492842 8917831 2894031..2895104 1 NC_013960.1 TIGRFAM: CRISPR-associated protein, NE0113 family; KEGG: tgr:Tgr7_1789 CRISPR-associated protein, NE0113 family; CRISPR-associated protein, NE0113 family 2895104 8917831 Nhal_2829 Nitrosococcus halophilus Nc4 CRISPR-associated protein, NE0113 family YP_003528281.1 2894031 D 472759 CDS YP_003528282.1 292492843 8917832 2895101..2897686 1 NC_013960.1 TIGRFAM: CRISPR-associated protein, Csm1 family; KEGG: sfu:Sfum_1349 CRISPR-associated protein, Csm1 family; CRISPR-associated protein, Csm1 family 2897686 8917832 Nhal_2830 Nitrosococcus halophilus Nc4 CRISPR-associated protein, Csm1 family YP_003528282.1 2895101 D 472759 CDS YP_003528283.1 292492844 8917833 2897701..2898162 1 NC_013960.1 TIGRFAM: CRISPR-associated protein, Csm2 family; PFAM: protein of unknown function DUF310; KEGG: dol:Dole_0743 CRISPR-associated Csm2 family protein; CRISPR-associated protein, Csm2 family 2898162 8917833 Nhal_2831 Nitrosococcus halophilus Nc4 CRISPR-associated protein, Csm2 family YP_003528283.1 2897701 D 472759 CDS YP_003528284.1 292492845 8917834 2898166..2898918 1 NC_013960.1 TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: protein of unknown function DUF324; KEGG: dol:Dole_0742 CRISPR-associated RAMP Csm3 family protein; CRISPR-associated RAMP protein, Csm3 family 2898918 8917834 Nhal_2832 Nitrosococcus halophilus Nc4 CRISPR-associated RAMP protein, Csm3 family YP_003528284.1 2898166 D 472759 CDS YP_003528285.1 292492846 8917835 2898915..2899877 1 NC_013960.1 KEGG: sfu:Sfum_1346 uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)-like; DNA repair RAMP superfamily-like protein 2899877 8917835 Nhal_2833 Nitrosococcus halophilus Nc4 DNA repair RAMP superfamily-like protein YP_003528285.1 2898915 D 472759 CDS YP_003528286.1 292492847 8917836 2899877..2901034 1 NC_013960.1 TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; KEGG: sfu:Sfum_1345 CRISPR-associated RAMP protein, Csm5 family; CRISPR-associated RAMP protein, Csm5 family 2901034 8917836 Nhal_2834 Nitrosococcus halophilus Nc4 CRISPR-associated RAMP protein, Csm5 family YP_003528286.1 2899877 D 472759 CDS YP_003528287.1 292492848 8917837 2901052..2901645 1 NC_013960.1 PFAM: protein of unknown function DUF820; KEGG: noc:Noc_0762 hypothetical protein; hypothetical protein 2901645 8917837 Nhal_2835 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528287.1 2901052 D 472759 CDS YP_003528288.1 292492849 8917838 2901691..2902980 1 NC_013960.1 TIGRFAM: CRISPR-associated protein, TIGR02710 family; KEGG: dol:Dole_0739 CRISPR-associated TIGR02710 family; CRISPR-associated protein 2902980 8917838 Nhal_2836 Nitrosococcus halophilus Nc4 CRISPR-associated protein YP_003528288.1 2901691 D 472759 CDS YP_003528289.1 292492850 8917839 2903144..2903680 1 NC_013960.1 KEGG: tgr:Tgr7_1317 protein of unknown function DUF1568; hypothetical protein 2903680 8917839 Nhal_2837 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528289.1 2903144 D 472759 CDS YP_003528290.1 292492851 8917840 2903677..2903796 1 NC_013960.1 hypothetical protein 2903796 8917840 Nhal_2838 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528290.1 2903677 D 472759 CDS YP_003528291.1 292492852 8917841 2903793..2904413 1 NC_013960.1 hypothetical protein 2904413 8917841 Nhal_2839 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528291.1 2903793 D 472759 CDS YP_003528292.1 292492853 8917842 2904420..2905577 1 NC_013960.1 PFAM: Domain of unknown function DUF1887; KEGG: tgr:Tgr7_1798 domain of unknown function DUF1887; hypothetical protein 2905577 8917842 Nhal_2840 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528292.1 2904420 D 472759 CDS YP_003528293.1 292492854 8917843 2906625..2908238 1 NC_013960.1 PFAM: transposase IS4 family protein; KEGG: shn:Shewana3_3655 IS4 family transposase; transposase IS4 family protein 2908238 8917843 Nhal_2841 Nitrosococcus halophilus Nc4 transposase IS4 family protein YP_003528293.1 2906625 D 472759 CDS YP_003528294.1 292492855 8917844 2908805..2909089 1 NC_013960.1 TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: hha:Hhal_0622 CRISPR-associated Cas2 family protein; CRISPR-associated protein Cas2 2909089 8917844 Nhal_2842 Nitrosococcus halophilus Nc4 CRISPR-associated protein Cas2 YP_003528294.1 2908805 D 472759 CDS YP_003528295.1 292492856 8917845 2909388..2910371 1 NC_013960.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: hha:Hhal_0619 CRISPR-associated Cas1 family protein; CRISPR-associated protein Cas1 2910371 8917845 Nhal_2843 Nitrosococcus halophilus Nc4 CRISPR-associated protein Cas1 YP_003528295.1 2909388 D 472759 CDS YP_003528296.1 292492857 8917846 2910368..2911156 1 NC_013960.1 KEGG: hha:Hhal_0621 hypothetical protein; hypothetical protein 2911156 8917846 Nhal_2844 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528296.1 2910368 D 472759 CDS YP_003528297.1 292492858 8917847 2911156..2911494 1 NC_013960.1 TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: neu:NE0110 hypothetical protein; CRISPR-associated protein Cas2 2911494 8917847 Nhal_2845 Nitrosococcus halophilus Nc4 CRISPR-associated protein Cas2 YP_003528297.1 2911156 D 472759 CDS YP_003528298.1 292492859 8917848 2911498..2912895 1 NC_013960.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: noc:Noc_0930 alpha amylase, catalytic region; alpha amylase catalytic subunit 2912895 8917848 Nhal_2846 Nitrosococcus halophilus Nc4 alpha amylase catalytic subunit YP_003528298.1 2911498 D 472759 CDS YP_003528299.1 292492860 8917849 2912931..2914739 1 NC_013960.1 PFAM: glycoside hydrolase 15-related; KEGG: scl:sce6733 glycosyl hydrolase; glycoside hydrolase 15-like protein 2914739 8917849 Nhal_2847 Nitrosococcus halophilus Nc4 glycoside hydrolase 15-like protein YP_003528299.1 2912931 D 472759 CDS YP_003528300.1 292492861 8917850 complement(2914721..2916280) 1 NC_013960.1 KEGG: noc:Noc_2062 glucose-6-phosphate 1-dehydrogenase; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; glucose-6-phosphate 1-dehydrogenase 2916280 8917850 Nhal_2848 Nitrosococcus halophilus Nc4 glucose-6-phosphate 1-dehydrogenase YP_003528300.1 2914721 R 472759 CDS YP_003528301.1 292492862 8917851 complement(2916284..2917726) 1 NC_013960.1 TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: noc:Noc_2061 6-phosphogluconate dehydrogenase; 6-phosphogluconate dehydrogenase 2917726 8917851 Nhal_2849 Nitrosococcus halophilus Nc4 6-phosphogluconate dehydrogenase YP_003528301.1 2916284 R 472759 CDS YP_003528302.1 292492863 8917852 2917872..2919722 1 NC_013960.1 PFAM: glycoside hydrolase 15-related; KEGG: noc:Noc_2053 glycoside hydrolase 15-like protein; glycoside hydrolase 15-like protein 2919722 8917852 Nhal_2850 Nitrosococcus halophilus Nc4 glycoside hydrolase 15-like protein YP_003528302.1 2917872 D 472759 CDS YP_003528303.1 292492864 8917853 complement(2919725..2920987) 1 NC_013960.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: noc:Noc_2054 Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase 2920987 8917853 Nhal_2851 Nitrosococcus halophilus Nc4 Glu/Leu/Phe/Val dehydrogenase YP_003528303.1 2919725 R 472759 CDS YP_003528304.1 292492865 8917854 complement(2921030..2922172) 1 NC_013960.1 PFAM: protein of unknown function UPF0118; KEGG: noc:Noc_2055 hypothetical protein; hypothetical protein 2922172 8917854 Nhal_2852 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528304.1 2921030 R 472759 CDS YP_003528305.1 292492866 8917855 complement(2922236..2923366) 1 NC_013960.1 TIGRFAM: transaldolase; PFAM: transaldolase; KEGG: noc:Noc_2057 transaldolase; transaldolase 2923366 8917855 Nhal_2853 Nitrosococcus halophilus Nc4 transaldolase YP_003528305.1 2922236 R 472759 CDS YP_003528306.1 292492867 8917856 2923486..2924799 1 NC_013960.1 KEGG: afw:Anae109_0080 magnesium transporter; TIGRFAM: magnesium transporter; PFAM: MgtE integral membrane region; CBS domain containing protein; MgtE intracellular region; SMART: CBS domain containing protein; magnesium transporter 2924799 8917856 Nhal_2854 Nitrosococcus halophilus Nc4 magnesium transporter YP_003528306.1 2923486 D 472759 CDS YP_003528307.1 292492868 8917857 2924861..2925349 1 NC_013960.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: noc:Noc_2186 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 2925349 8917857 Nhal_2855 Nitrosococcus halophilus Nc4 ErfK/YbiS/YcfS/YnhG family protein YP_003528307.1 2924861 D 472759 CDS YP_003528308.1 292492869 8917858 2925359..2926288 1 NC_013960.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: noc:Noc_2185 ABC transporter inner membrane subunit; binding-protein-dependent transporters inner membrane component 2926288 8917858 Nhal_2856 Nitrosococcus halophilus Nc4 binding-protein-dependent transporters inner membrane component YP_003528308.1 2925359 D 472759 CDS YP_003528309.1 292492870 8917859 2926285..2927085 1 NC_013960.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: noc:Noc_2184 ABC transporter inner membrane subunit; binding-protein-dependent transporters inner membrane component 2927085 8917859 Nhal_2857 Nitrosococcus halophilus Nc4 binding-protein-dependent transporters inner membrane component YP_003528309.1 2926285 D 472759 CDS YP_003528310.1 292492871 8917860 2927089..2928114 1 NC_013960.1 PFAM: glycoside hydrolase; KEGG: noc:Noc_2183 glycoside hydrolase family protein; glycoside hydrolase 2928114 8917860 Nhal_2858 Nitrosococcus halophilus Nc4 glycoside hydrolase YP_003528310.1 2927089 D 472759 CDS YP_003528311.1 292492872 8917861 complement(2928199..2928408) 1 NC_013960.1 PFAM: YcfA family protein; KEGG: ype:YPO1818 hypothetical protein; YcfA family protein 2928408 8917861 Nhal_2859 Nitrosococcus halophilus Nc4 YcfA family protein YP_003528311.1 2928199 R 472759 CDS YP_003528312.1 292492873 8917862 complement(2928474..2928608) 1 NC_013960.1 PFAM: protein of unknown function UPF0150; KEGG: mpo:Mpop_1487 protein of unknown function UPF0150; hypothetical protein 2928608 8917862 Nhal_2860 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528312.1 2928474 R 472759 CDS YP_003528313.1 292492874 8917863 2928806..2929072 1 NC_013960.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: dvl:Dvul_2607 CopG family transcriptional regulator; CopG domain-containing protein DNA-binding domain-containing protein 2929072 8917863 Nhal_2861 Nitrosococcus halophilus Nc4 CopG domain-containing protein DNA-binding domain-containing protein YP_003528313.1 2928806 D 472759 CDS YP_003528314.1 292492875 8917864 2929069..2929392 1 NC_013960.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: gur:Gura_2718 addiction module antitoxin; RelE/StbE family addiction module toxin 2929392 8917864 Nhal_2862 Nitrosococcus halophilus Nc4 RelE/StbE family addiction module toxin YP_003528314.1 2929069 D 472759 CDS YP_003528315.1 292492876 8917865 complement(2929606..2930511) 1 NC_013960.1 KEGG: noc:Noc_0454 hypothetical protein; hypothetical protein 2930511 8917865 Nhal_2863 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528315.1 2929606 R 472759 CDS YP_003528316.1 292492877 8917866 2930706..2931665 1 NC_013960.1 PFAM: patatin; KEGG: noc:Noc_0455 patatin; lysophospholipase 2931665 8917866 Nhal_2864 Nitrosococcus halophilus Nc4 lysophospholipase YP_003528316.1 2930706 D 472759 CDS YP_003528317.1 292492878 8917867 2931703..2932251 1 NC_013960.1 PFAM: phosphoribosyltransferase; KEGG: noc:Noc_0456 hypoxanthine-guanine phosphoribosyltransferase; phosphoribosyltransferase 2932251 8917867 Nhal_2865 Nitrosococcus halophilus Nc4 phosphoribosyltransferase YP_003528317.1 2931703 D 472759 CDS YP_003528318.1 292492879 8917868 2932262..2933002 1 NC_013960.1 PFAM: purine or other phosphorylase family 1; KEGG: noc:Noc_0457 5'-methylthioadenosine phosphorylase; S-methyl-5'-thioadenosine phosphorylase 2933002 8917868 Nhal_2866 Nitrosococcus halophilus Nc4 S-methyl-5'-thioadenosine phosphorylase YP_003528318.1 2932262 D 472759 CDS YP_003528319.1 292492880 8917869 complement(2932986..2933792) 1 NC_013960.1 KEGG: tgr:Tgr7_1357 hypothetical protein; hypothetical protein 2933792 8917869 Nhal_2867 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528319.1 2932986 R 472759 CDS YP_003528320.1 292492881 8917870 2933903..2934145 1 NC_013960.1 hypothetical protein 2934145 8917870 Nhal_2868 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528320.1 2933903 D 472759 CDS YP_003528321.1 292492882 8917871 2934160..2934789 1 NC_013960.1 KEGG: noc:Noc_0458 hypothetical protein; hypothetical protein 2934789 8917871 Nhal_2869 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528321.1 2934160 D 472759 CDS YP_003528322.1 292492883 8917872 2934824..2935450 1 NC_013960.1 KEGG: noc:Noc_0459 hypothetical protein; hypothetical protein 2935450 8917872 Nhal_2870 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528322.1 2934824 D 472759 CDS YP_003528323.1 292492884 8917873 complement(2935982..2937058) 1 NC_013960.1 PFAM: hypothetical protein; KEGG: noc:Noc_1458 WD-40-like beta propeller repeat-containing protein; hypothetical protein 2937058 8917873 Nhal_2871 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528323.1 2935982 R 472759 CDS YP_003528324.1 292492885 8917874 complement(2937076..2940465) 1 NC_013960.1 PFAM: peptidase M28; SMART: PDZ/DHR/GLGF domain protein; KEGG: noc:Noc_1459 peptidase M28; peptidase M28 2940465 8917874 Nhal_2872 Nitrosococcus halophilus Nc4 peptidase M28 YP_003528324.1 2937076 R 472759 CDS YP_003528325.1 292492886 8917876 2940951..2941067 1 NC_013960.1 hypothetical protein 2941067 8917876 Nhal_2874 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528325.1 2940951 D 472759 CDS YP_003528326.1 292492887 8917877 2941075..2941524 1 NC_013960.1 KEGG: noc:Noc_1477 hypothetical protein; hypothetical protein 2941524 8917877 Nhal_2875 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528326.1 2941075 D 472759 CDS YP_003528327.1 292492888 8917878 complement(2941588..2942334) 1 NC_013960.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pna:Pnap_2835 ABC transporter; ABC transporter 2942334 8917878 Nhal_2876 Nitrosococcus halophilus Nc4 ABC transporter YP_003528327.1 2941588 R 472759 CDS YP_003528328.1 292492889 8917879 complement(2942338..2943468) 1 NC_013960.1 PFAM: protein of unknown function DUF214; KEGG: glo:Glov_0230 protein of unknown function DUF214; hypothetical protein 2943468 8917879 Nhal_2877 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528328.1 2942338 R 472759 CDS YP_003528329.1 292492890 8917880 complement(2943465..2944625) 1 NC_013960.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: gsu:GSU0949 RND family efflux transporter MFP subunit; RND family efflux transporter MFP subunit 2944625 8917880 Nhal_2878 Nitrosococcus halophilus Nc4 RND family efflux transporter MFP subunit YP_003528329.1 2943465 R 472759 CDS YP_003528330.1 292492891 8917881 complement(2944622..2945266) 1 NC_013960.1 PFAM: TetR family transcriptional regulator; KEGG: tgr:Tgr7_0301 TetR family transcriptional regulator; TetR family transcriptional regulator 2945266 8917881 Nhal_2879 Nitrosococcus halophilus Nc4 TetR family transcriptional regulator YP_003528330.1 2944622 R 472759 CDS YP_003528331.1 292492892 8917882 complement(2945462..2946652) 1 NC_013960.1 KEGG: noc:Noc_1481 hypothetical protein; hypothetical protein 2946652 8917882 Nhal_2880 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528331.1 2945462 R 472759 CDS YP_003528332.1 292492893 8917883 2947082..2947504 1 NC_013960.1 PFAM: transposase IS200-family protein; KEGG: noc:Noc_0387 transposase IS200; transposase IS200-family protein 2947504 8917883 Nhal_2881 Nitrosococcus halophilus Nc4 transposase IS200-family protein YP_003528332.1 2947082 D 472759 CDS YP_003528333.1 292492894 8917884 2947505..2948626 1 NC_013960.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0388 IS891/IS1136/IS1341 transposase; transposase, IS605 OrfB family 2948626 8917884 Nhal_2882 Nitrosococcus halophilus Nc4 transposase, IS605 OrfB family YP_003528333.1 2947505 D 472759 CDS YP_003528334.1 292492895 8917885 2948690..2948989 1 NC_013960.1 KEGG: reh:H16_A1278 ATP-dependent transcriptional regulator containing adenylate cyclase related domains; ATP-dependent transcriptional regulator containing adenylate cyclase related domains 2948989 8917885 Nhal_2883 Nitrosococcus halophilus Nc4 ATP-dependent transcriptional regulator containing adenylate cyclase related domains YP_003528334.1 2948690 D 472759 CDS YP_003528335.1 292492896 8917886 2948964..2949404 1 NC_013960.1 KEGG: reh:H16_A1278 ATP-dependent transcriptional regulator containing adenylate cyclase related domains; ATP-dependent transcriptional regulator containing adenylate cyclase related domains 2949404 8917886 Nhal_2884 Nitrosococcus halophilus Nc4 ATP-dependent transcriptional regulator containing adenylate cyclase related domains YP_003528335.1 2948964 D 472759 CDS YP_003528336.1 292492897 8917887 complement(2949456..2949659) 1 NC_013960.1 KEGG: mxa:MXAN_3661 acetyltransferase; acetyltransferase 2949659 8917887 Nhal_2885 Nitrosococcus halophilus Nc4 acetyltransferase YP_003528336.1 2949456 R 472759 CDS YP_003528337.1 292492898 8917889 2950069..2950374 1 NC_013960.1 PFAM: protein of unknown function DUF59; KEGG: noc:Noc_1484 hypothetical protein; hypothetical protein 2950374 8917889 Nhal_2887 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528337.1 2950069 D 472759 CDS YP_003528338.1 292492899 8917890 2950417..2951565 1 NC_013960.1 PFAM: NnrS family protein; KEGG: noc:Noc_1485 NnrS-like protein; NnrS family protein 2951565 8917890 Nhal_2888 Nitrosococcus halophilus Nc4 NnrS family protein YP_003528338.1 2950417 D 472759 CDS YP_003528339.1 292492900 8917891 complement(2952199..2952945) 1 NC_013960.1 KEGG: noc:Noc_1486 ABC-type phosphate/phosphonate transporter periplasmic component; phosphate/phosphonate ABC transporter substrate-binding protein 2952945 8917891 Nhal_2889 Nitrosococcus halophilus Nc4 phosphate/phosphonate ABC transporter substrate-binding protein YP_003528339.1 2952199 R 472759 CDS YP_003528340.1 292492901 8917892 complement(2952969..2953445) 1 NC_013960.1 KEGG: noc:Noc_1487 PAS domain-containing protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; SMART: PAS domain containing protein; PAS sensor protein 2953445 8917892 Nhal_2890 Nitrosococcus halophilus Nc4 PAS sensor protein YP_003528340.1 2952969 R 472759 CDS YP_003528341.1 292492902 8917893 complement(2953537..2953899) 1 NC_013960.1 PFAM: Roadblock/LC7 family protein; KEGG: noc:Noc_1488 roadblock/LC7 domain-contain protein; Roadblock/LC7 family protein 2953899 8917893 Nhal_2891 Nitrosococcus halophilus Nc4 Roadblock/LC7 family protein YP_003528341.1 2953537 R 472759 CDS YP_003528342.1 292492903 8917894 complement(2954408..2954590) 1 NC_013960.1 hypothetical protein 2954590 8917894 Nhal_2892 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528342.1 2954408 R 472759 CDS YP_003528343.1 292492904 8917895 complement(2954668..2956245) 1 NC_013960.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1248 proton-translocating NADH-quinone oxidoreductase, chain M; proton-translocating NADH-quinone oxidoreductase subunit M 2956245 8917895 Nhal_2893 Nitrosococcus halophilus Nc4 proton-translocating NADH-quinone oxidoreductase subunit M YP_003528343.1 2954668 R 472759 CDS YP_003528344.1 292492905 8917896 complement(2956264..2957805) 1 NC_013960.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1249 proton-translocating NADH-quinone oxidoreductase, chain M; proton-translocating NADH-quinone oxidoreductase subunit M 2957805 8917896 Nhal_2894 Nitrosococcus halophilus Nc4 proton-translocating NADH-quinone oxidoreductase subunit M YP_003528344.1 2956264 R 472759 CDS YP_003528345.1 292492906 8917897 complement(2957816..2959351) 1 NC_013960.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; KEGG: noc:Noc_1250 NADH dehydrogenase (quinone); NADH/Ubiquinone/plastoquinone (complex I) 2959351 8917897 Nhal_2895 Nitrosococcus halophilus Nc4 NADH/Ubiquinone/plastoquinone (complex I) YP_003528345.1 2957816 R 472759 CDS YP_003528346.1 292492907 8917898 complement(2959341..2962688) 1 NC_013960.1 KEGG: noc:Noc_1251 hypothetical protein; hypothetical protein 2962688 8917898 Nhal_2896 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528346.1 2959341 R 472759 CDS YP_003528347.1 292492908 8917899 complement(2962716..2964170) 1 NC_013960.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1252 proton-translocating NADH-quinone oxidoreductase, chain M; proton-translocating NADH-quinone oxidoreductase subunit M 2964170 8917899 Nhal_2897 Nitrosococcus halophilus Nc4 proton-translocating NADH-quinone oxidoreductase subunit M YP_003528347.1 2962716 R 472759 CDS YP_003528348.1 292492909 8917900 2964632..2965255 1 NC_013960.1 PFAM: protein of unknown function DUF938; KEGG: noc:Noc_1253 hypothetical protein; hypothetical protein 2965255 8917900 Nhal_2898 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528348.1 2964632 D 472759 CDS YP_003528349.1 292492910 8917901 2965275..2966609 1 NC_013960.1 KEGG: scl:sce1866 glucosyltransferase; sterol 3-beta-glucosyltransferase 2966609 8917901 Nhal_2899 Nitrosococcus halophilus Nc4 sterol 3-beta-glucosyltransferase YP_003528349.1 2965275 D 472759 CDS YP_003528350.1 292492911 8917902 2966780..2969455 1 NC_013960.1 TIGRFAM: 2-oxo-acid dehydrogenase E1 subunit, homodimeric type; KEGG: noc:Noc_1254 pyruvate dehydrogenase subunit E1; 2-oxo-acid dehydrogenase E1 subunit, homodimeric type 2969455 8917902 Nhal_2900 Nitrosococcus halophilus Nc4 2-oxo-acid dehydrogenase E1 subunit, homodimeric type YP_003528350.1 2966780 D 472759 CDS YP_003528351.1 292492912 8917903 2969470..2970795 1 NC_013960.1 PFAM: dehydrogenase; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: noc:Noc_1255 branched-chain alpha-keto acid dehydrogenase subunit E2; dehydrogenase 2970795 8917903 Nhal_2901 Nitrosococcus halophilus Nc4 dehydrogenase YP_003528351.1 2969470 D 472759 CDS YP_003528352.1 292492913 8917904 2970869..2972287 1 NC_013960.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: noc:Noc_1256 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase 2972287 8917904 Nhal_2902 Nitrosococcus halophilus Nc4 dihydrolipoamide dehydrogenase YP_003528352.1 2970869 D 472759 CDS YP_003528353.1 292492914 8917905 2972483..2973052 1 NC_013960.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: noc:Noc_1257 HNH endonuclease; HNH endonuclease 2973052 8917905 Nhal_2903 Nitrosococcus halophilus Nc4 HNH endonuclease YP_003528353.1 2972483 D 472759 CDS YP_003528354.1 292492915 8917906 2973148..2974110 1 NC_013960.1 PFAM: UspA domain protein; KEGG: noc:Noc_1258 universal stress protein UspA; UspA domain-containing protein 2974110 8917906 Nhal_2904 Nitrosococcus halophilus Nc4 UspA domain-containing protein YP_003528354.1 2973148 D 472759 CDS YP_003528355.1 292492916 8917908 2975997..2976461 1 NC_013960.1 hypothetical protein 2976461 8917908 Nhal_2906 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528355.1 2975997 D 472759 CDS YP_003528356.1 292492917 8917909 2976484..2979465 1 NC_013960.1 PFAM: protein of unknown function DUF748; KEGG: noc:Noc_1259 hypothetical protein; hypothetical protein 2979465 8917909 Nhal_2907 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528356.1 2976484 D 472759 CDS YP_003528357.1 292492918 8917910 complement(2979490..2980503) 1 NC_013960.1 KEGG: noc:Noc_1748 hypothetical protein; hypothetical protein 2980503 8917910 Nhal_2908 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528357.1 2979490 R 472759 CDS YP_003528358.1 292492919 8917911 2980797..2981651 1 NC_013960.1 PFAM: metallophosphoesterase; KEGG: noc:Noc_1260 metallophosphoesterase; metallophosphoesterase 2981651 8917911 Nhal_2909 Nitrosococcus halophilus Nc4 metallophosphoesterase YP_003528358.1 2980797 D 472759 CDS YP_003528359.1 292492920 8917912 complement(2981754..2983151) 1 NC_013960.1 PFAM: beta-lactamase; Rhodanese domain protein; SMART: rhodanese; KEGG: metallo-beta-lactamase superfamily protein; K01069 hydroxyacylglutathione hydrolase; beta-lactamase 2983151 8917912 Nhal_2910 Nitrosococcus halophilus Nc4 beta-lactamase YP_003528359.1 2981754 R 472759 CDS YP_003528360.1 292492921 8917913 2983368..2984327 1 NC_013960.1 KEGG: rso:RS04819 lipoprotein transmembrane; lipoprotein transmembrane 2984327 8917913 Nhal_2911 Nitrosococcus halophilus Nc4 lipoprotein transmembrane YP_003528360.1 2983368 D 472759 CDS YP_003528361.1 292492922 8917914 complement(2984386..2985294) 1 NC_013960.1 PFAM: PP-loop domain protein; KEGG: noc:Noc_1596 ATPase; PP-loop domain-containing protein 2985294 8917914 Nhal_2912 Nitrosococcus halophilus Nc4 PP-loop domain-containing protein YP_003528361.1 2984386 R 472759 CDS YP_003528362.1 292492923 8917915 complement(2985379..2987706) 1 NC_013960.1 PFAM: fatty acid cistrans isomerase; KEGG: abo:ABO_1700 esterified fatty acid cis/trans isomerase family protein; fatty acid cistrans isomerase 2987706 8917915 Nhal_2913 Nitrosococcus halophilus Nc4 fatty acid cistrans isomerase YP_003528362.1 2985379 R 472759 CDS YP_003528363.1 292492924 8917916 complement(2987738..2988853) 1 NC_013960.1 KEGG: mca:MCA0092 RNA 2'-O-ribose methyltransferase; RNA 2'-O-ribose methyltransferase 2988853 8917916 Nhal_2914 Nitrosococcus halophilus Nc4 RNA 2'-O-ribose methyltransferase YP_003528363.1 2987738 R 472759 CDS YP_003528364.1 292492925 8917917 complement(2988871..2989506) 1 NC_013960.1 KEGG: noc:Noc_2080 methionine sulfoxide reductase A; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 2989506 8917917 Nhal_2915 Nitrosococcus halophilus Nc4 peptide methionine sulfoxide reductase YP_003528364.1 2988871 R 472759 CDS YP_003528365.1 292492926 8917918 complement(2989679..2990053) 1 NC_013960.1 PFAM: protein of unknown function DUF423; KEGG: noc:Noc_2079 hypothetical protein; hypothetical protein 2990053 8917918 Nhal_2916 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528365.1 2989679 R 472759 CDS YP_003528366.1 292492927 8917919 2990390..2990674 1 NC_013960.1 KEGG: noc:Noc_1074 hypothetical protein; hypothetical protein 2990674 8917919 Nhal_2917 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528366.1 2990390 D 472759 CDS YP_003528367.1 292492928 8917920 complement(2990755..2991108) 1 NC_013960.1 KEGG: noc:Noc_1075 hypothetical protein; hypothetical protein 2991108 8917920 Nhal_2918 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528367.1 2990755 R 472759 CDS YP_003528368.1 292492929 8917921 2991535..2992359 1 NC_013960.1 PFAM: beta-lactamase; KEGG: psa:PST_3889 metallo-beta-lactamase; beta-lactamase 2992359 8917921 Nhal_2919 Nitrosococcus halophilus Nc4 beta-lactamase YP_003528368.1 2991535 D 472759 CDS YP_003528369.1 292492930 8917922 complement(2992489..2993661) 1 NC_013960.1 KEGG: nmu:Nmul_A1535 hypothetical protein; hypothetical protein 2993661 8917922 Nhal_2920 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528369.1 2992489 R 472759 CDS YP_003528370.1 292492931 8917923 complement(2993669..2994454) 1 NC_013960.1 KEGG: mmw:Mmwyl1_4196 transcriptional regulator; transcriptional regulator 2994454 8917923 Nhal_2921 Nitrosococcus halophilus Nc4 transcriptional regulator YP_003528370.1 2993669 R 472759 CDS YP_003528371.1 292492932 8917924 2994529..2995257 1 NC_013960.1 hypothetical protein 2995257 8917924 Nhal_2922 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528371.1 2994529 D 472759 CDS YP_003528372.1 292492933 8917925 2995254..2998109 1 NC_013960.1 hypothetical protein 2998109 8917925 Nhal_2923 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528372.1 2995254 D 472759 CDS YP_003528373.1 292492934 8917926 2998112..2999110 1 NC_013960.1 TIGRFAM: CRISPR-associated protein Csc2; CRISPR-associated protein Csc2 2999110 8917926 Nhal_2924 Nitrosococcus halophilus Nc4 CRISPR-associated protein Csc2 YP_003528373.1 2998112 D 472759 CDS YP_003528374.1 292492935 8917927 2999107..2999790 1 NC_013960.1 hypothetical protein 2999790 8917927 Nhal_2925 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528374.1 2999107 D 472759 CDS YP_003528375.1 292492936 8917928 2999781..3001769 1 NC_013960.1 PFAM: DEAD/DEAH box helicase; helicase domain protein; SMART: DEAD-like helicase; KEGG: dvl:Dvul_2723 DEAD/DEAH box helicase domain-containing protein; DEAD/DEAH box helicase 3001769 8917928 Nhal_2926 Nitrosococcus halophilus Nc4 DEAD/DEAH box helicase YP_003528375.1 2999781 D 472759 CDS YP_003528376.1 292492937 8917929 3001726..3002274 1 NC_013960.1 PFAM: protein of unknown function DUF83; hypothetical protein 3002274 8917929 Nhal_2927 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528376.1 3001726 D 472759 CDS YP_003528377.1 292492938 8917930 3002284..3003252 1 NC_013960.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: cff:CFF8240_0665 CRISPR-associated protein Cas1; CRISPR-associated protein Cas1 3003252 8917930 Nhal_2928 Nitrosococcus halophilus Nc4 CRISPR-associated protein Cas1 YP_003528377.1 3002284 D 472759 CDS YP_003528378.1 292492939 8917931 3003259..3003561 1 NC_013960.1 TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; CRISPR-associated protein Cas2 3003561 8917931 Nhal_2929 Nitrosococcus halophilus Nc4 CRISPR-associated protein Cas2 YP_003528378.1 3003259 D 472759 CDS YP_003528379.1 292492940 8917932 complement(3006027..3006527) 1 NC_013960.1 KEGG: cak:Caul_5241 transposase; transposase 3006527 8917932 Nhal_2930 Nitrosococcus halophilus Nc4 transposase YP_003528379.1 3006027 R 472759 CDS YP_003528380.1 292492941 8917933 complement(3006554..3006994) 1 NC_013960.1 KEGG: mno:Mnod_8191 transposase and inactivated derivatives-like protein; transposase 3006994 8917933 Nhal_2931 Nitrosococcus halophilus Nc4 transposase YP_003528380.1 3006554 R 472759 CDS YP_003528381.1 292492942 8917934 3007817..3008431 1 NC_013960.1 KEGG: sme:SMa2167 hypothetical protein; transcriptional regulator 3008431 8917934 Nhal_2932 Nitrosococcus halophilus Nc4 transcriptional regulator YP_003528381.1 3007817 D 472759 CDS YP_003528382.1 292492943 8917935 3009000..3009260 1 NC_013960.1 hypothetical protein 3009260 8917935 Nhal_2933 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528382.1 3009000 D 472759 CDS YP_003528383.1 292492944 8917936 complement(3009465..3009878) 1 NC_013960.1 PFAM: transposase IS200-family protein; KEGG: noc:Noc_1500 transposase IS200; transposase IS200-family protein 3009878 8917936 Nhal_2934 Nitrosococcus halophilus Nc4 transposase IS200-family protein YP_003528383.1 3009465 R 472759 CDS YP_003528384.1 292492945 8917937 3009935..3011110 1 NC_013960.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_1501 transposase; transposase, IS605 OrfB family 3011110 8917937 Nhal_2935 Nitrosococcus halophilus Nc4 transposase, IS605 OrfB family YP_003528384.1 3009935 D 472759 CDS YP_003528385.1 292492946 8917938 3011467..3013173 1 NC_013960.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: aeh:Mlg_0309 choline/carnitine/betaine transporter; choline/carnitine/betaine transporter 3013173 8917938 Nhal_2936 Nitrosococcus halophilus Nc4 choline/carnitine/betaine transporter YP_003528385.1 3011467 D 472759 CDS YP_003528386.1 292492947 8917939 complement(3013259..3013942) 1 NC_013960.1 PFAM: rhomboid family protein; KEGG: noc:Noc_1066 rhomboid-like protein; rhomboid family protein 3013942 8917939 Nhal_2937 Nitrosococcus halophilus Nc4 rhomboid family protein YP_003528386.1 3013259 R 472759 CDS YP_003528387.1 292492948 8917940 3014137..3014904 1 NC_013960.1 KEGG: pla:Plav_0049 OsmC family protein; OsmC family protein 3014904 8917940 Nhal_2938 Nitrosococcus halophilus Nc4 OsmC family protein YP_003528387.1 3014137 D 472759 CDS YP_003528388.1 292492949 8917941 complement(3014864..3015625) 1 NC_013960.1 KEGG: dal:Dalk_2704 hypothetical protein; hypothetical protein 3015625 8917941 Nhal_2939 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528388.1 3014864 R 472759 CDS YP_003528389.1 292492950 8917942 3015900..3018059 1 NC_013960.1 PFAM: SNARE associated Golgi protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: maq:Maqu_0145 pyridine nucleotide-disulphide oxidoreductase dimerisation region; hypothetical protein 3018059 8917942 Nhal_2940 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528389.1 3015900 D 472759 CDS YP_003528390.1 292492951 8917943 complement(3018056..3018241) 1 NC_013960.1 KEGG: rhi:NGR_c07220 S-2-haloacid dehalogenase; 2-haloalkanoic acid dehalogenase; L-2-haloacid dehalogenase; DEHC; S-2-haloacid dehalogenase 3018241 8917943 Nhal_2941 Nitrosococcus halophilus Nc4 S-2-haloacid dehalogenase YP_003528390.1 3018056 R 472759 CDS YP_003528391.1 292492952 8917944 complement(3018234..3018515) 1 NC_013960.1 KEGG: cbd:CBUD_0810 BRAMP; BRAMP protein 3018515 8917944 Nhal_2942 Nitrosococcus halophilus Nc4 BRAMP protein YP_003528391.1 3018234 R 472759 CDS YP_003528392.1 292492953 8917946 complement(3019162..3020385) 1 NC_013960.1 PFAM: transposase mutator type; KEGG: son:SO_0708 transposase mutator family protein; transposase mutator type 3020385 8917946 Nhal_2944 Nitrosococcus halophilus Nc4 transposase mutator type YP_003528392.1 3019162 R 472759 CDS YP_003528393.1 292492954 8917947 3021593..3021988 1 NC_013960.1 KEGG: pha:PSHAb0233 hypothetical protein; hypothetical protein 3021988 8917947 Nhal_2945 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528393.1 3021593 D 472759 CDS YP_003528394.1 292492955 8917948 3022231..3022410 1 NC_013960.1 hypothetical protein 3022410 8917948 Nhal_2946 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528394.1 3022231 D 472759 CDS YP_003528395.1 292492956 8917950 complement(3022558..3023967) 1 NC_013960.1 PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: noc:Noc_0965 pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3) component and related enzyme; pyridine nucleotide-disulfide oxidoreductase dimerization subunit 3023967 8917950 Nhal_2948 Nitrosococcus halophilus Nc4 pyridine nucleotide-disulfide oxidoreductase dimerization subunit YP_003528395.1 3022558 R 472759 CDS YP_003528396.1 292492957 8917951 3024175..3025263 1 NC_013960.1 KEGG: aeh:Mlg_2502 hypothetical protein; hypothetical protein 3025263 8917951 Nhal_2949 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528396.1 3024175 D 472759 CDS YP_003528397.1 292492958 8917952 3025265..3025837 1 NC_013960.1 KEGG: aeh:Mlg_2503 hypothetical protein; hypothetical protein 3025837 8917952 Nhal_2950 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528397.1 3025265 D 472759 CDS YP_003528398.1 292492959 8917953 complement(3025847..3026101) 1 NC_013960.1 KEGG: afw:Anae109_1555 transmembrane anti-sigma factor; hypothetical protein 3026101 8917953 Nhal_2951 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528398.1 3025847 R 472759 CDS YP_003528399.1 292492960 8917954 complement(3026095..3026745) 1 NC_013960.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: pau:PA14_21550 RNA polymerase ECF-subfamily sigma-70 factor; sigma-70 family RNA polymerase sigma factor 3026745 8917954 Nhal_2952 Nitrosococcus halophilus Nc4 sigma-70 family RNA polymerase sigma factor YP_003528399.1 3026095 R 472759 CDS YP_003528400.1 292492961 8917955 complement(3026955..3027386) 1 NC_013960.1 PFAM: protein of unknown function DUF101; KEGG: sfu:Sfum_2728 protein of unknown function DUF101; hypothetical protein 3027386 8917955 Nhal_2953 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528400.1 3026955 R 472759 CDS YP_003528401.1 292492962 8917956 complement(3027406..3028332) 1 NC_013960.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: sfu:Sfum_2727 cobalamin synthesis protein, P47K; cobalamin synthesis protein P47K 3028332 8917956 Nhal_2954 Nitrosococcus halophilus Nc4 cobalamin synthesis protein P47K YP_003528401.1 3027406 R 472759 CDS YP_003528402.1 292492963 8917957 complement(3028335..3029795) 1 NC_013960.1 PFAM: protein of unknown function UPF0027; KEGG: sfu:Sfum_2726 protein of unknown function UPF0027; hypothetical protein 3029795 8917957 Nhal_2955 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528402.1 3028335 R 472759 CDS YP_003528403.1 292492964 8917958 complement(3029848..3030576) 1 NC_013960.1 PFAM: protein of unknown function DUF72; KEGG: nis:NIS_1306 hypothetical protein; hypothetical protein 3030576 8917958 Nhal_2956 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528403.1 3029848 R 472759 CDS YP_003528404.1 292492965 8917959 complement(3030594..3033383) 1 NC_013960.1 KEGG: reu:Reut_A1753 chaperone heat-shock protein; chaperone heat-shock protein 3033383 8917959 Nhal_2957 Nitrosococcus halophilus Nc4 chaperone heat-shock protein YP_003528404.1 3030594 R 472759 CDS YP_003528405.1 292492966 8917960 complement(3033395..3035239) 1 NC_013960.1 KEGG: cti:RALTA_A1539 heat-shock chaperone HSP70/DnaK; heat-shock chaperone HSP70/DnaK 3035239 8917960 Nhal_2958 Nitrosococcus halophilus Nc4 heat-shock chaperone HSP70/DnaK YP_003528405.1 3033395 R 472759 CDS YP_003528406.1 292492967 8917961 complement(3035236..3035793) 1 NC_013960.1 KEGG: bpy:Bphyt_2133 hypothetical protein; hypothetical protein 3035793 8917961 Nhal_2959 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528406.1 3035236 R 472759 CDS YP_003528407.1 292492968 8917962 3035910..3037064 1 NC_013960.1 TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; tryptophan halogenase; FAD dependent oxidoreductase; Lycopene beta and epsilon cyclase; KEGG: noc:Noc_0982 geranylgeranyl reductase; geranylgeranyl reductase 3037064 8917962 Nhal_2960 Nitrosococcus halophilus Nc4 geranylgeranyl reductase YP_003528407.1 3035910 D 472759 CDS YP_003528408.1 292492969 8917963 3037418..3038527 1 NC_013960.1 TIGRFAM: transaldolase; PFAM: transaldolase; KEGG: nmu:Nmul_A1622 transaldolase; transaldolase 3038527 8917963 Nhal_2961 Nitrosococcus halophilus Nc4 transaldolase YP_003528408.1 3037418 D 472759 CDS YP_003528409.1 292492970 8917964 3038593..3039588 1 NC_013960.1 KEGG: noc:Noc_0983 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 3039588 8917964 Nhal_2962 Nitrosococcus halophilus Nc4 ribose-phosphate pyrophosphokinase YP_003528409.1 3038593 D 472759 CDS YP_003528410.1 292492971 8917965 3039754..3040407 1 NC_013960.1 KEGG: noc:Noc_0984 hypothetical protein; hypothetical protein 3040407 8917965 Nhal_2963 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528410.1 3039754 D 472759 CDS YP_003528411.1 292492972 8917966 complement(3040457..3040642) 1 NC_013960.1 KEGG: asa:ASA_1478 hypothetical protein; hypothetical protein 3040642 8917966 Nhal_2964 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528411.1 3040457 R 472759 CDS YP_003528412.1 292492973 8917967 complement(3040639..3041184) 1 NC_013960.1 KEGG: noc:Noc_0985 protein-methionine-S-oxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: methionine sulfoxide reductase B; methionine-R-sulfoxide reductase 3041184 8917967 Nhal_2965 Nitrosococcus halophilus Nc4 methionine-R-sulfoxide reductase YP_003528412.1 3040639 R 472759 CDS YP_003528413.1 292492974 8917968 3041466..3042047 1 NC_013960.1 PFAM: hypothetical protein; KEGG: noc:Noc_0986 hypothetical protein; hypothetical protein 3042047 8917968 Nhal_2966 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528413.1 3041466 D 472759 CDS YP_003528414.1 292492975 8917969 3042111..3043145 1 NC_013960.1 PFAM: AIR synthase related protein domain protein; AIR synthase related protein; KEGG: aeh:Mlg_2063 AIR synthase-like protein; AIR synthase-like protein domain-containing protein 3043145 8917969 Nhal_2967 Nitrosococcus halophilus Nc4 AIR synthase-like protein domain-containing protein YP_003528414.1 3042111 D 472759 CDS YP_003528415.1 292492976 8917970 3043342..3046080 1 NC_013960.1 KEGG: noc:Noc_0987 hypothetical protein; hypothetical protein 3046080 8917970 Nhal_2968 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528415.1 3043342 D 472759 CDS YP_003528416.1 292492977 8917971 3046067..3049546 1 NC_013960.1 PFAM: UvrD/REP helicase; KEGG: noc:Noc_0988 UvrD/REP helicase; UvrD/REP helicase 3049546 8917971 Nhal_2969 Nitrosococcus halophilus Nc4 UvrD/REP helicase YP_003528416.1 3046067 D 472759 CDS YP_003528417.1 292492978 8917972 3049543..3049761 1 NC_013960.1 KEGG: tgr:Tgr7_0553 hypothetical protein; hypothetical protein 3049761 8917972 Nhal_2970 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528417.1 3049543 D 472759 CDS YP_003528418.1 292492979 8917973 3049903..3050484 1 NC_013960.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: noc:Noc_0989 hypothetical protein; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 3050484 8917973 Nhal_2971 Nitrosococcus halophilus Nc4 alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen YP_003528418.1 3049903 D 472759 CDS YP_003528419.1 292492980 8917974 complement(3050590..3052068) 1 NC_013960.1 KEGG: noc:Noc_0990 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: pyruvate kinase barrel; pyruvate kinase alpha/beta; pyruvate kinase 3052068 8917974 Nhal_2972 Nitrosococcus halophilus Nc4 pyruvate kinase YP_003528419.1 3050590 R 472759 CDS YP_003528420.1 292492981 8917975 complement(3052124..3053017) 1 NC_013960.1 PFAM: alpha/beta hydrolase fold; KEGG: noc:Noc_0991 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 3053017 8917975 Nhal_2973 Nitrosococcus halophilus Nc4 alpha/beta hydrolase fold protein YP_003528420.1 3052124 R 472759 CDS YP_003528421.1 292492982 8917976 complement(3053021..3054196) 1 NC_013960.1 KEGG: noc:Noc_0992 hypothetical protein; hypothetical protein 3054196 8917976 Nhal_2974 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528421.1 3053021 R 472759 CDS YP_003528422.1 292492983 8917977 complement(3054219..3054767) 1 NC_013960.1 KEGG: noc:Noc_0993 hypothetical protein; hypothetical protein 3054767 8917977 Nhal_2975 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528422.1 3054219 R 472759 CDS YP_003528423.1 292492984 8917978 3054962..3055804 1 NC_013960.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: noc:Noc_0994 methylase involved in ubiquinone/menaquinone biosynthesis-like; type 11 methyltransferase 3055804 8917978 Nhal_2976 Nitrosococcus halophilus Nc4 type 11 methyltransferase YP_003528423.1 3054962 D 472759 CDS YP_003528424.1 292492985 8917979 complement(3055869..3058061) 1 NC_013960.1 KEGG: noc:Noc_0995 helicase RecD/TraA; TIGRFAM: helicase, RecD/TraA family; SMART: ATPase AAA; DNA-binding protein; helicase, RecD/TraA family 3058061 8917979 Nhal_2977 Nitrosococcus halophilus Nc4 helicase, RecD/TraA family YP_003528424.1 3055869 R 472759 CDS YP_003528425.1 292492986 8917980 complement(3058226..3059131) 1 NC_013960.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_0581 ABC transporter ATPase; ABC transporter 3059131 8917980 Nhal_2978 Nitrosococcus halophilus Nc4 ABC transporter YP_003528425.1 3058226 R 472759 CDS YP_003528426.1 292492987 8917981 complement(3059086..3059964) 1 NC_013960.1 TIGRFAM: phosphate ABC transporter inner membrane subunit PstA; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: noc:Noc_0582 phosphate ABC transporter permease; phosphate ABC transporter permease 3059964 8917981 Nhal_2979 Nitrosococcus halophilus Nc4 phosphate ABC transporter permease YP_003528426.1 3059086 R 472759 CDS YP_003528427.1 292492988 8917982 complement(3059961..3060848) 1 NC_013960.1 TIGRFAM: phosphate ABC transporter inner membrane subunit PstC; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: noc:Noc_0583 phosphate ABC transporter permease; phosphate ABC transporter permease 3060848 8917982 Nhal_2980 Nitrosococcus halophilus Nc4 phosphate ABC transporter permease YP_003528427.1 3059961 R 472759 CDS YP_003528428.1 292492989 8917983 complement(3060805..3061632) 1 NC_013960.1 TIGRFAM: phosphate binding protein; KEGG: noc:Noc_0584 extracellular solute-binding protein; phosphate binding protein 3061632 8917983 Nhal_2981 Nitrosococcus halophilus Nc4 phosphate binding protein YP_003528428.1 3060805 R 472759 CDS YP_003528429.1 292492990 8917984 complement(3061650..3061979) 1 NC_013960.1 PFAM: ArsR family transcriptional regulator; SMART: ArsR family transcriptional regulator; KEGG: ppd:Ppro_1931 ArsR family transcriptional regulator; ArsR family transcriptional regulator 3061979 8917984 Nhal_2982 Nitrosococcus halophilus Nc4 ArsR family transcriptional regulator YP_003528429.1 3061650 R 472759 CDS YP_003528430.1 292492991 8917985 complement(3062141..3062887) 1 NC_013960.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: noc:Noc_0998 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 3062887 8917985 Nhal_2983 Nitrosococcus halophilus Nc4 endonuclease/exonuclease/phosphatase YP_003528430.1 3062141 R 472759 CDS YP_003528431.1 292492992 8917986 complement(3062926..3063915) 1 NC_013960.1 TIGRFAM: hopanoid-associated sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; NmrA family protein; KEGG: noc:Noc_0999 NAD-dependent epimerase/dehydratase; hopanoid-associated sugar epimerase 3063915 8917986 Nhal_2984 Nitrosococcus halophilus Nc4 hopanoid-associated sugar epimerase YP_003528431.1 3062926 R 472759 CDS YP_003528432.1 292492993 8917987 complement(3063961..3064503) 1 NC_013960.1 KEGG: noc:Noc_1000 hypothetical protein; hypothetical protein 3064503 8917987 Nhal_2985 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528432.1 3063961 R 472759 CDS YP_003528433.1 292492994 8917988 3064810..3065262 1 NC_013960.1 PFAM: Tellurite resistance TerB; KEGG: noc:Noc_1001 tellurite resistance TerB; Tellurite resistance TerB 3065262 8917988 Nhal_2986 Nitrosococcus halophilus Nc4 Tellurite resistance TerB YP_003528433.1 3064810 D 472759 CDS YP_003528434.1 292492995 8917989 3065287..3065865 1 NC_013960.1 PFAM: stress protein; KEGG: noc:Noc_1002 stress protein; stress protein 3065865 8917989 Nhal_2987 Nitrosococcus halophilus Nc4 stress protein YP_003528434.1 3065287 D 472759 CDS YP_003528435.1 292492996 8917990 3065928..3067046 1 NC_013960.1 KEGG: noc:Noc_1003 hypothetical protein; hypothetical protein 3067046 8917990 Nhal_2988 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528435.1 3065928 D 472759 CDS YP_003528436.1 292492997 8917991 3067047..3067790 1 NC_013960.1 KEGG: noc:Noc_1004 hypothetical protein; hypothetical protein 3067790 8917991 Nhal_2989 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528436.1 3067047 D 472759 CDS YP_003528437.1 292492998 8917992 3067787..3068911 1 NC_013960.1 KEGG: noc:Noc_1005 hypothetical protein; hypothetical protein 3068911 8917992 Nhal_2990 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528437.1 3067787 D 472759 CDS YP_003528438.1 292492999 8917993 3068940..3069914 1 NC_013960.1 KEGG: noc:Noc_1006 ATP/GTP-binding protein; ATP/GTP-binding protein 3069914 8917993 Nhal_2991 Nitrosococcus halophilus Nc4 ATP/GTP-binding protein YP_003528438.1 3068940 D 472759 CDS YP_003528439.1 292493000 8917994 3069970..3070992 1 NC_013960.1 PFAM: protein of unknown function DUF475; integral membrane protein TerC; KEGG: noc:Noc_1007 hypothetical protein; hypothetical protein 3070992 8917994 Nhal_2992 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528439.1 3069970 D 472759 CDS YP_003528440.1 292493001 8917995 3071071..3071649 1 NC_013960.1 PFAM: stress protein; KEGG: noc:Noc_1008 stress protein; stress protein 3071649 8917995 Nhal_2993 Nitrosococcus halophilus Nc4 stress protein YP_003528440.1 3071071 D 472759 CDS YP_003528441.1 292493002 8917996 complement(3071830..3071991) 1 NC_013960.1 KEGG: net:Neut_2360 hypothetical protein; hypothetical protein 3071991 8917996 Nhal_2994 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528441.1 3071830 R 472759 CDS YP_003528442.1 292493003 8917997 3072113..3073480 1 NC_013960.1 TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; Quinolinate phosphoribosyl transferase; KEGG: noc:Noc_1009 nicotinate phosphoribosyltransferase; nicotinate phosphoribosyltransferase 3073480 8917997 Nhal_2995 Nitrosococcus halophilus Nc4 nicotinate phosphoribosyltransferase YP_003528442.1 3072113 D 472759 CDS YP_003528443.1 292493004 8917998 complement(3073487..3073906) 1 NC_013960.1 KEGG: hypothetical protein; hypothetical protein 3073906 8917998 Nhal_2996 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528443.1 3073487 R 472759 CDS YP_003528444.1 292493005 8918000 3074081..3074401 1 NC_013960.1 KEGG: net:Neut_2000 hypothetical protein; hypothetical protein 3074401 8918000 Nhal_2998 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528444.1 3074081 D 472759 CDS YP_003528445.1 292493006 8918001 3074512..3074688 1 NC_013960.1 hypothetical protein 3074688 8918001 Nhal_2999 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528445.1 3074512 D 472759 CDS YP_003528446.1 292493007 8918002 3074731..3075132 1 NC_013960.1 KEGG: bur:Bcep18194_B2253 hypothetical protein; hypothetical protein 3075132 8918002 Nhal_3000 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528446.1 3074731 D 472759 CDS YP_003528447.1 292493008 8918003 3075129..3075830 1 NC_013960.1 PFAM: RES domain protein; KEGG: tbd:Tbd_1493 hypothetical protein; RES domain-containing protein 3075830 8918003 Nhal_3001 Nitrosococcus halophilus Nc4 RES domain-containing protein YP_003528447.1 3075129 D 472759 CDS YP_003528448.1 292493009 8918006 3076757..3078430 1 NC_013960.1 PFAM: Resolvase domain; Recombinase; KEGG: bxe:Bxe_A2714 cassette chromosome recombinase resolvase, CcrB like; resolvase 3078430 8918006 Nhal_3004 Nitrosococcus halophilus Nc4 resolvase YP_003528448.1 3076757 D 472759 CDS YP_003528449.1 292493010 8918007 complement(3078408..3079346) 1 NC_013960.1 KEGG: azo:azo3816 AraC family transcriptional regulator; AraC family transcriptional regulator 3079346 8918007 Nhal_3005 Nitrosococcus halophilus Nc4 AraC family transcriptional regulator YP_003528449.1 3078408 R 472759 CDS YP_003528450.1 292493011 8918008 3079550..3080509 1 NC_013960.1 PFAM: homocysteine S-methyltransferase; KEGG: azo:azo3817 hypothetical protein; homocysteine S-methyltransferase 3080509 8918008 Nhal_3006 Nitrosococcus halophilus Nc4 homocysteine S-methyltransferase YP_003528450.1 3079550 D 472759 CDS YP_003528451.1 292493012 8918009 complement(3080914..3081414) 1 NC_013960.1 KEGG: maq:Maqu_0392 hypothetical protein; hypothetical protein 3081414 8918009 Nhal_3007 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528451.1 3080914 R 472759 CDS YP_003528452.1 292493013 8918010 3081539..3082117 1 NC_013960.1 KEGG: noc:Noc_1094 hypothetical protein; hypothetical protein 3082117 8918010 Nhal_3008 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528452.1 3081539 D 472759 CDS YP_003528453.1 292493014 8918011 complement(3082214..3082645) 1 NC_013960.1 PFAM: DNA polymerase III chi subunit HolC; KEGG: noc:Noc_0288 DNA polymerase III chi subunit, HolC; DNA polymerase III chi subunit HolC 3082645 8918011 Nhal_3009 Nitrosococcus halophilus Nc4 DNA polymerase III chi subunit HolC YP_003528453.1 3082214 R 472759 CDS YP_003528454.1 292493015 8918012 complement(3082707..3084212) 1 NC_013960.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: noc:Noc_0289 leucyl aminopeptidase; leucyl aminopeptidase 3084212 8918012 Nhal_3010 Nitrosococcus halophilus Nc4 leucyl aminopeptidase YP_003528454.1 3082707 R 472759 CDS YP_003528455.1 292493016 8918013 3084366..3086765 1 NC_013960.1 PFAM: protein of unknown function DUF323; peptidoglycan-binding protein; tyrosine protein kinase; serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: hch:HCH_04672 serine/threonine protein kinase; hypothetical protein 3086765 8918013 Nhal_3011 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528455.1 3084366 D 472759 CDS YP_003528456.1 292493017 8918014 3086974..3087198 1 NC_013960.1 PFAM: protein of unknown function DUF433; KEGG: rpt:Rpal_3160 protein of unknown function DUF433; hypothetical protein 3087198 8918014 Nhal_3012 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528456.1 3086974 D 472759 CDS YP_003528457.1 292493018 8918015 complement(3087227..3088399) 1 NC_013960.1 SMART: TIR protein; KEGG: dol:Dole_1625 hypothetical protein; TIR protein 3088399 8918015 Nhal_3013 Nitrosococcus halophilus Nc4 TIR protein YP_003528457.1 3087227 R 472759 CDS YP_003528458.1 292493019 8918016 3088930..3090054 1 NC_013960.1 PFAM: permease YjgP/YjgQ family protein; KEGG: noc:Noc_1910 permease YjgP/YjgQ; permease YjgP/YjgQ family protein 3090054 8918016 Nhal_3014 Nitrosococcus halophilus Nc4 permease YjgP/YjgQ family protein YP_003528458.1 3088930 D 472759 CDS YP_003528459.1 292493020 8918017 3090051..3091115 1 NC_013960.1 PFAM: permease YjgP/YjgQ family protein; KEGG: noc:Noc_1909 permease YjgP/YjgQ; permease YjgP/YjgQ family protein 3091115 8918017 Nhal_3015 Nitrosococcus halophilus Nc4 permease YjgP/YjgQ family protein YP_003528459.1 3090051 D 472759 CDS YP_003528460.1 292493021 8918018 complement(3091109..3091561) 1 NC_013960.1 PFAM: RDD domain containing protein; KEGG: noc:Noc_1908 hypothetical protein; RDD domain-containing protein 3091561 8918018 Nhal_3016 Nitrosococcus halophilus Nc4 RDD domain-containing protein YP_003528460.1 3091109 R 472759 CDS YP_003528461.1 292493022 8918019 3091609..3095511 1 NC_013960.1 KEGG: noc:Noc_1907 phosphoribosylformylglycinamidine synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; phosphoribosylformylglycinamidine synthase 3095511 8918019 Nhal_3017 Nitrosococcus halophilus Nc4 phosphoribosylformylglycinamidine synthase YP_003528461.1 3091609 D 472759 CDS YP_003528462.1 292493023 8918020 complement(3095520..3096068) 1 NC_013960.1 PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2; KEGG: noc:Noc_1906 Smr protein/MutS2-like; Smr protein/MutS2 3096068 8918020 Nhal_3018 Nitrosococcus halophilus Nc4 Smr protein/MutS2 YP_003528462.1 3095520 R 472759 CDS YP_003528463.1 292493024 8918021 3096241..3098247 1 NC_013960.1 KEGG: noc:Noc_1901 membrane-bound proton-translocating pyrophosphatase; TIGRFAM: V-type H(+)-translocating pyrophosphatase; PFAM: inorganic H pyrophosphatase; V-type H(+)-translocating pyrophosphatase 3098247 8918021 Nhal_3019 Nitrosococcus halophilus Nc4 V-type H(+)-translocating pyrophosphatase YP_003528463.1 3096241 D 472759 CDS YP_003528464.1 292493025 8918023 complement(3099632..3099970) 1 NC_013960.1 KEGG: gur:Gura_1489 hypothetical protein; hypothetical protein 3099970 8918023 Nhal_3020 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528464.1 3099632 R 472759 CDS YP_003528465.1 292493026 8918024 complement(3099936..3100232) 1 NC_013960.1 PFAM: protein of unknown function DUF497; KEGG: avn:Avin_31950 hypothetical protein; hypothetical protein 3100232 8918024 Nhal_3021 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528465.1 3099936 R 472759 CDS YP_003528466.1 292493027 8918025 3100494..3100943 1 NC_013960.1 PFAM: protein of unknown function DUF29; KEGG: noc:Noc_0766 hypothetical protein; hypothetical protein 3100943 8918025 Nhal_3022 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528466.1 3100494 D 472759 CDS YP_003528467.1 292493028 8918026 3100985..3101377 1 NC_013960.1 KEGG: xfn:XfasM23_1208 hypothetical protein; hypothetical protein 3101377 8918026 Nhal_3023 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528467.1 3100985 D 472759 CDS YP_003528468.1 292493029 8918027 3101428..3101640 1 NC_013960.1 PFAM: protein of unknown function UPF0150; KEGG: tbd:Tbd_1973 hypothetical protein; hypothetical protein 3101640 8918027 Nhal_3024 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528468.1 3101428 D 472759 CDS YP_003528469.1 292493030 8918029 complement(3102117..3104306) 1 NC_013960.1 KEGG: bpt:Bpet4498 hypothetical protein; hypothetical protein 3104306 8918029 Nhal_3026 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528469.1 3102117 R 472759 CDS YP_003528470.1 292493031 8918030 complement(3104479..3105336) 1 NC_013960.1 KEGG: sml:Smlt3074 hypothetical protein; hypothetical protein 3105336 8918030 Nhal_3027 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528470.1 3104479 R 472759 CDS YP_003528471.1 292493032 8918032 3106964..3107401 1 NC_013960.1 PFAM: protein of unknown function DUF29; KEGG: noc:Noc_0766 hypothetical protein; hypothetical protein 3107401 8918032 Nhal_3029 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528471.1 3106964 D 472759 CDS YP_003528472.1 292493033 8918033 complement(3107528..3107854) 1 NC_013960.1 PFAM: HicB family protein; KEGG: glo:Glov_0059 HicB family protein; HicB family protein 3107854 8918033 Nhal_3030 Nitrosococcus halophilus Nc4 HicB family protein YP_003528472.1 3107528 R 472759 CDS YP_003528473.1 292493034 8918034 complement(3107851..3108105) 1 NC_013960.1 KEGG: rfr:Rfer_0179 HicA protein; HicA protein 3108105 8918034 Nhal_3031 Nitrosococcus halophilus Nc4 HicA protein YP_003528473.1 3107851 R 472759 CDS YP_003528474.1 292493035 8918036 complement(3108572..3108955) 1 NC_013960.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: noc:Noc_0496 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3108955 8918036 Nhal_3033 Nitrosococcus halophilus Nc4 glyoxalase/bleomycin resistance protein/dioxygenase YP_003528474.1 3108572 R 472759 CDS YP_003528475.1 292493036 8918037 3109234..3110196 1 NC_013960.1 hypothetical protein 3110196 8918037 Nhal_3034 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528475.1 3109234 D 472759 CDS YP_003528476.1 292493037 8918038 3110298..3112262 1 NC_013960.1 KEGG: dds:Ddes_1605 molecular chaperone-like protein; Molecular chaperone-like protein 3112262 8918038 Nhal_3035 Nitrosococcus halophilus Nc4 Molecular chaperone-like protein YP_003528476.1 3110298 D 472759 CDS YP_003528477.1 292493038 8918039 complement(3112319..3112519) 1 NC_013960.1 KEGG: noc:Noc_1614 hypothetical protein; hypothetical protein 3112519 8918039 Nhal_3036 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528477.1 3112319 R 472759 CDS YP_003528478.1 292493039 8918040 complement(3112659..3113486) 1 NC_013960.1 PFAM: (2R)-phospho-3-sulfolactate synthase ComA; KEGG: hypothetical protein; (2R)-phospho-3-sulfolactate synthase ComA 3113486 8918040 Nhal_3037 Nitrosococcus halophilus Nc4 (2R)-phospho-3-sulfolactate synthase ComA YP_003528478.1 3112659 R 472759 CDS YP_003528479.1 292493040 8918041 complement(3113476..3114870) 1 NC_013960.1 PFAM: MmgE/PrpD family protein; KEGG: bph:Bphy_6460 MmgE/PrpD family protein; 2-methylcitrate dehydratase 3114870 8918041 Nhal_3038 Nitrosococcus halophilus Nc4 2-methylcitrate dehydratase YP_003528479.1 3113476 R 472759 CDS YP_003528480.1 292493041 8918042 3115183..3115644 1 NC_013960.1 PFAM: TspO/MBR family protein; KEGG: ret:RHE_PE00375 tryptophan rich sensory protein; TspO/MBR family protein 3115644 8918042 Nhal_3039 Nitrosococcus halophilus Nc4 TspO/MBR family protein YP_003528480.1 3115183 D 472759 CDS YP_003528481.1 292493042 8918043 complement(3115696..3115980) 1 NC_013960.1 KEGG: cti:RALTA_A2185 hypothetical protein; hypothetical protein 3115980 8918043 Nhal_3040 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528481.1 3115696 R 472759 CDS YP_003528482.1 292493043 8918044 3116488..3117630 1 NC_013960.1 TIGRFAM: cytochrome C oxidase subunit II; PFAM: cytochrome C oxidase subunit II; KEGG: noc:Noc_1767 cytochrome C oxidase subunit II; cytochrome C oxidase subunit II 3117630 8918044 Nhal_3041 Nitrosococcus halophilus Nc4 cytochrome C oxidase subunit II YP_003528482.1 3116488 D 472759 CDS YP_003528483.1 292493044 8918045 3117627..3120188 1 NC_013960.1 KEGG: noc:Noc_1766 cytochrome C oxidase; TIGRFAM: cytochrome C oxidase subunit I; PFAM: cytochrome C oxidase subunit I; cytochrome C oxidase subunit I 3120188 8918045 Nhal_3042 Nitrosococcus halophilus Nc4 cytochrome C oxidase subunit I YP_003528483.1 3117627 D 472759 CDS YP_003528484.1 292493045 8918046 3120199..3120576 1 NC_013960.1 KEGG: noc:Noc_1765 transmembrane prediction; hypothetical protein 3120576 8918046 Nhal_3043 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528484.1 3120199 D 472759 CDS YP_003528485.1 292493046 8918047 3120576..3120668 1 NC_013960.1 hypothetical protein 3120668 8918047 Nhal_3044 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528485.1 3120576 D 472759 CDS YP_003528486.1 292493047 8918048 3120665..3121774 1 NC_013960.1 KEGG: noc:Noc_1764 cytochrome C, class I; cytochrome C, class I 3121774 8918048 Nhal_3045 Nitrosococcus halophilus Nc4 cytochrome C, class I YP_003528486.1 3120665 D 472759 CDS YP_003528487.1 292493048 8918049 complement(3121825..3123159) 1 NC_013960.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: noc:Noc_1355 signal transduction histidine kinase; ATP-binding region ATPase domain-containing protein 3123159 8918049 Nhal_3046 Nitrosococcus halophilus Nc4 ATP-binding region ATPase domain-containing protein YP_003528487.1 3121825 R 472759 CDS YP_003528488.1 292493049 8918050 complement(3123156..3123815) 1 NC_013960.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: noc:Noc_1354 two comoponent transcriptional regulator; response regulator receiver 3123815 8918050 Nhal_3047 Nitrosococcus halophilus Nc4 response regulator receiver YP_003528488.1 3123156 R 472759 CDS YP_003528489.1 292493050 8918051 complement(3123815..3124147) 1 NC_013960.1 PFAM: propeptide PepSY amd peptidase M4; KEGG: noc:Noc_1353 peptidase; propeptide PepSY amd peptidase M4 3124147 8918051 Nhal_3048 Nitrosococcus halophilus Nc4 propeptide PepSY amd peptidase M4 YP_003528489.1 3123815 R 472759 CDS YP_003528490.1 292493051 8918052 complement(3124119..3124430) 1 NC_013960.1 PFAM: propeptide PepSY amd peptidase M4; KEGG: noc:Noc_1351 peptidase; propeptide PepSY amd peptidase M4 3124430 8918052 Nhal_3049 Nitrosococcus halophilus Nc4 propeptide PepSY amd peptidase M4 YP_003528490.1 3124119 R 472759 CDS YP_003528491.1 292493052 8918053 3124653..3124943 1 NC_013960.1 KEGG: noc:Noc_1349 hypothetical protein; hypothetical protein 3124943 8918053 Nhal_3050 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528491.1 3124653 D 472759 CDS YP_003528492.1 292493053 8918054 3125029..3125766 1 NC_013960.1 TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: noc:Noc_1348 6-phosphogluconolactonase; 6-phosphogluconolactonase 3125766 8918054 Nhal_3051 Nitrosococcus halophilus Nc4 6-phosphogluconolactonase YP_003528492.1 3125029 D 472759 CDS YP_003528493.1 292493054 8918055 3125763..3126770 1 NC_013960.1 KEGG: noc:Noc_1347 glucokinase; TIGRFAM: glucokinase; PFAM: glucokinase; glucokinase 3126770 8918055 Nhal_3052 Nitrosococcus halophilus Nc4 glucokinase YP_003528493.1 3125763 D 472759 CDS YP_003528494.1 292493055 8918056 3126767..3127186 1 NC_013960.1 PFAM: ApaG domain protein; KEGG: noc:Noc_1346 ApaG; ApaG domain-containing protein 3127186 8918056 Nhal_3053 Nitrosococcus halophilus Nc4 ApaG domain-containing protein YP_003528494.1 3126767 D 472759 CDS YP_003528495.1 292493056 8918057 3127293..3128129 1 NC_013960.1 TIGRFAM: bis(5'-nucleosyl)-tetraphosphatase (symmetrical); PFAM: metallophosphoesterase; KEGG: noc:Noc_1345 diadenosine tetraphosphatase; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 3128129 8918057 Nhal_3054 Nitrosococcus halophilus Nc4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YP_003528495.1 3127293 D 472759 CDS YP_003528496.1 292493057 8918058 3128163..3129812 1 NC_013960.1 PFAM: extracellular solute-binding protein family 5; KEGG: noc:Noc_1344 extracellular solute-binding protein; family 5 extracellular solute-binding protein 3129812 8918058 Nhal_3055 Nitrosococcus halophilus Nc4 family 5 extracellular solute-binding protein YP_003528496.1 3128163 D 472759 CDS YP_003528497.1 292493058 8918059 complement(3129809..3130570) 1 NC_013960.1 KEGG: pol:Bpro_1844 hypothetical protein; hypothetical protein 3130570 8918059 Nhal_3056 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528497.1 3129809 R 472759 CDS YP_003528498.1 292493059 8918060 complement(3130573..3131310) 1 NC_013960.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: msl:Msil_2480 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3131310 8918060 Nhal_3057 Nitrosococcus halophilus Nc4 short-chain dehydrogenase/reductase SDR YP_003528498.1 3130573 R 472759 CDS YP_003528499.1 292493060 8918061 complement(3131314..3131895) 1 NC_013960.1 PFAM: carbonic anhydrase; KEGG: noc:Noc_1341 carbonic anhydrase; carbonic anhydrase 3131895 8918061 Nhal_3058 Nitrosococcus halophilus Nc4 carbonic anhydrase YP_003528499.1 3131314 R 472759 CDS YP_003528500.1 292493061 8918062 complement(3131918..3132568) 1 NC_013960.1 PFAM: protein of unknown function DUF938; methyltransferase type 12; KEGG: bid:Bind_1301 hypothetical protein; hypothetical protein 3132568 8918062 Nhal_3059 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528500.1 3131918 R 472759 CDS YP_003528501.1 292493062 8918063 3132819..3134414 1 NC_013960.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: mca:MCA0913 sigma-54 dependent transcriptional regulator; Fis family transcriptional regulator 3134414 8918063 Nhal_3060 Nitrosococcus halophilus Nc4 Fis family transcriptional regulator YP_003528501.1 3132819 D 472759 CDS YP_003528502.1 292493063 8918064 complement(3134426..3135322) 1 NC_013960.1 PFAM: DNA/RNA non-specific endonuclease; SMART: DNA/RNA non-specific endonuclease; KEGG: noc:Noc_1834 DNA/RNA non-specific endonuclease; DNA/RNA non-specific endonuclease 3135322 8918064 Nhal_3061 Nitrosococcus halophilus Nc4 DNA/RNA non-specific endonuclease YP_003528502.1 3134426 R 472759 CDS YP_003528503.1 292493064 8918066 complement(3135756..3136535) 1 NC_013960.1 KEGG: tau:Tola_1062 hypothetical protein; hypothetical protein 3136535 8918066 Nhal_3063 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528503.1 3135756 R 472759 CDS YP_003528504.1 292493065 8918067 complement(3136555..3136746) 1 NC_013960.1 KEGG: tau:Tola_1063 hypothetical protein; hypothetical protein 3136746 8918067 Nhal_3064 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528504.1 3136555 R 472759 CDS YP_003528505.1 292493066 8918069 3137345..3137629 1 NC_013960.1 TIGRFAM: addiction module antidote protein; KEGG: rso:RS05545 hypothetical protein; addiction module antidote protein 3137629 8918069 Nhal_3066 Nitrosococcus halophilus Nc4 addiction module antidote protein YP_003528505.1 3137345 D 472759 CDS YP_003528506.1 292493067 8918070 complement(3137708..3138790) 1 NC_013960.1 KEGG: noc:Noc_1833 hypothetical protein; hypothetical protein 3138790 8918070 Nhal_3067 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528506.1 3137708 R 472759 CDS YP_003528507.1 292493068 8918071 complement(3138876..3139484) 1 NC_013960.1 PFAM: protein of unknown function DUF1326; KEGG: msl:Msil_2659 protein of unknown function DUF1326; hypothetical protein 3139484 8918071 Nhal_3068 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528507.1 3138876 R 472759 CDS YP_003528508.1 292493069 8918072 3139743..3140807 1 NC_013960.1 KEGG: bcm:Bcenmc03_3151 hypothetical protein; hypothetical protein 3140807 8918072 Nhal_3069 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528508.1 3139743 D 472759 CDS YP_003528509.1 292493070 8918073 3140834..3141433 1 NC_013960.1 PFAM: LemA family protein; KEGG: noc:Noc_1832 hypothetical protein; LemA family protein 3141433 8918073 Nhal_3070 Nitrosococcus halophilus Nc4 LemA family protein YP_003528509.1 3140834 D 472759 CDS YP_003528510.1 292493071 8918074 3141460..3143463 1 NC_013960.1 PFAM: peptidase M48 Ste24p; KEGG: noc:Noc_1831 peptidase M48, Ste24p; peptidase M48 Ste24p 3143463 8918074 Nhal_3071 Nitrosococcus halophilus Nc4 peptidase M48 Ste24p YP_003528510.1 3141460 D 472759 CDS YP_003528511.1 292493072 8918075 complement(3143494..3144465) 1 NC_013960.1 PFAM: CHAD domain containing protein; KEGG: mxa:MXAN_0861 CHAD domain-containing protein; CHAD domain-containing protein 3144465 8918075 Nhal_3072 Nitrosococcus halophilus Nc4 CHAD domain-containing protein YP_003528511.1 3143494 R 472759 CDS YP_003528512.1 292493073 8918076 complement(3144533..3145054) 1 NC_013960.1 PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; KEGG: noc:Noc_1830 Appr-1-p processing; Appr-1-p processing domain-containing protein 3145054 8918076 Nhal_3073 Nitrosococcus halophilus Nc4 Appr-1-p processing domain-containing protein YP_003528512.1 3144533 R 472759 CDS YP_003528513.1 292493074 8918077 3145448..3145978 1 NC_013960.1 KEGG: noc:Noc_1829 hypothetical protein; hypothetical protein 3145978 8918077 Nhal_3074 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528513.1 3145448 D 472759 CDS YP_003528514.1 292493075 8918078 complement(3146017..3146721) 1 NC_013960.1 KEGG: mca:MCA0647 ion transport family protein; hypothetical protein 3146721 8918078 Nhal_3075 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528514.1 3146017 R 472759 CDS YP_003528515.1 292493076 8918079 3146859..3148010 1 NC_013960.1 PFAM: integrase family protein; KEGG: cti:pRALTA_0632 phage integrase; integrase family protein 3148010 8918079 Nhal_3076 Nitrosococcus halophilus Nc4 integrase family protein YP_003528515.1 3146859 D 472759 CDS YP_003528516.1 292493077 8918080 complement(3148229..3150187) 1 NC_013960.1 SMART: ATPase AAA; KEGG: noc:Noc_1621 ATPase; ATPase AAA 3150187 8918080 Nhal_3077 Nitrosococcus halophilus Nc4 ATPase AAA YP_003528516.1 3148229 R 472759 CDS YP_003528517.1 292493078 8918081 3150370..3150696 1 NC_013960.1 PFAM: cupin; KEGG: sat:SYN_01067 phosphoribosylaminoimidazole carboxylase ATPase; cupin 3150696 8918081 Nhal_3078 Nitrosococcus halophilus Nc4 cupin YP_003528517.1 3150370 D 472759 CDS YP_003528518.1 292493079 8918082 3150693..3151979 1 NC_013960.1 KEGG: noc:Noc_1926 hypothetical protein; hypothetical protein 3151979 8918082 Nhal_3079 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528518.1 3150693 D 472759 CDS YP_003528519.1 292493080 8918083 3152021..3152746 1 NC_013960.1 KEGG: bcj:BCAL1975 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase 3152746 8918083 Nhal_3080 Nitrosococcus halophilus Nc4 diguanylate cyclase YP_003528519.1 3152021 D 472759 CDS YP_003528520.1 292493081 8918084 3152870..3155626 1 NC_013960.1 PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: hha:Hhal_0052 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 3155626 8918084 Nhal_3081 Nitrosococcus halophilus Nc4 AMP-dependent synthetase and ligase YP_003528520.1 3152870 D 472759 CDS YP_003528521.1 292493082 8918085 3155657..3156211 1 NC_013960.1 PFAM: NADPH-dependent FMN reductase; KEGG: rfr:Rfer_3495 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 3156211 8918085 Nhal_3082 Nitrosococcus halophilus Nc4 NADPH-dependent FMN reductase YP_003528521.1 3155657 D 472759 CDS YP_003528522.1 292493083 8918086 complement(3156226..3157212) 1 NC_013960.1 KEGG: noc:Noc_0277 streptogramin lyase; streptogramin lyase 3157212 8918086 Nhal_3083 Nitrosococcus halophilus Nc4 streptogramin lyase YP_003528522.1 3156226 R 472759 CDS YP_003528523.1 292493084 8918087 3157800..3158855 1 NC_013960.1 KEGG: cvi:CV_2404 hypothetical protein; hypothetical protein 3158855 8918087 Nhal_3084 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528523.1 3157800 D 472759 CDS YP_003528524.1 292493085 8918088 3158978..3160093 1 NC_013960.1 PFAM: metallophosphoesterase; KEGG: geo:Geob_2083 metallophosphoesterase; metallophosphoesterase 3160093 8918088 Nhal_3085 Nitrosococcus halophilus Nc4 metallophosphoesterase YP_003528524.1 3158978 D 472759 CDS YP_003528525.1 292493086 8918089 3160109..3161923 1 NC_013960.1 KEGG: noc:Noc_1644 excinuclease ABC subunit C; TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; excinuclease ABC C subunit domain protein; helix-hairpin-helix motif; UvrB/UvrC protein; SMART: excinuclease ABC C subunit domain protein; DNA-binding protein; excinuclease ABC subunit C 3161923 8918089 Nhal_3086 Nitrosococcus halophilus Nc4 excinuclease ABC subunit C YP_003528525.1 3160109 D 472759 CDS YP_003528526.1 292493087 8918090 3161992..3162579 1 NC_013960.1 KEGG: noc:Noc_1643 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 3162579 8918090 Nhal_3087 Nitrosococcus halophilus Nc4 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase YP_003528526.1 3161992 D 472759 CDS YP_003528527.1 292493088 8918093 3163467..3164066 1 NC_013960.1 hypothetical protein 3164066 8918093 Nhal_3088 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528527.1 3163467 D 472759 CDS YP_003528528.1 292493089 8918094 complement(3164253..3164705) 1 NC_013960.1 hypothetical protein 3164705 8918094 Nhal_3089 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528528.1 3164253 R 472759 CDS YP_003528529.1 292493090 8918095 complement(3164784..3164900) 1 NC_013960.1 hypothetical protein 3164900 8918095 Nhal_3090 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528529.1 3164784 R 472759 CDS YP_003528530.1 292493091 8918096 3165006..3166943 1 NC_013960.1 TIGRFAM: oligopeptide transporter OPT family; oligopeptide transporters, OPT superfamily; PFAM: oligopeptide transporter OPT superfamily protein; KEGG: xfm:Xfasm12_1456 oligopeptide transporter; oligopeptide transporter OPT family 3166943 8918096 Nhal_3091 Nitrosococcus halophilus Nc4 oligopeptide transporter OPT family YP_003528530.1 3165006 D 472759 CDS YP_003528531.1 292493092 8918097 3166943..3167728 1 NC_013960.1 KEGG: mca:MCA1000 hypothetical protein; hypothetical protein 3167728 8918097 Nhal_3092 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528531.1 3166943 D 472759 CDS YP_003528532.1 292493093 8918098 3167764..3168249 1 NC_013960.1 KEGG: noc:Noc_1653 hypothetical protein; hypothetical protein 3168249 8918098 Nhal_3093 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528532.1 3167764 D 472759 CDS YP_003528533.1 292493094 8918099 3168275..3169501 1 NC_013960.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: gur:Gura_2656 acetate kinase; acetate kinase 3169501 8918099 Nhal_3094 Nitrosococcus halophilus Nc4 acetate kinase YP_003528533.1 3168275 D 472759 CDS YP_003528534.1 292493095 8918100 3169544..3171679 1 NC_013960.1 KEGG: mca:MCA0296 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; glycogen debranching protein GlgX 3171679 8918100 Nhal_3095 Nitrosococcus halophilus Nc4 glycogen debranching protein GlgX YP_003528534.1 3169544 D 472759 CDS YP_003528535.1 292493096 8918101 3171694..3174222 1 NC_013960.1 KEGG: net:Neut_2054 alpha-glucan phosphorylases; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; alpha-glucan phosphorylase 3174222 8918101 Nhal_3096 Nitrosococcus halophilus Nc4 alpha-glucan phosphorylase YP_003528535.1 3171694 D 472759 CDS YP_003528536.1 292493097 8918102 3174266..3175267 1 NC_013960.1 PFAM: conserved hypothetical protein; KEGG: noc:Noc_1651 hypothetical protein; hypothetical protein 3175267 8918102 Nhal_3097 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528536.1 3174266 D 472759 CDS YP_003528537.1 292493098 8918103 complement(3175262..3176485) 1 NC_013960.1 PFAM: amino acid permease-associated region; KEGG: tgr:Tgr7_0624 hypothetical protein; amino acid permease-associated protein 3176485 8918103 Nhal_3098 Nitrosococcus halophilus Nc4 amino acid permease-associated protein YP_003528537.1 3175262 R 472759 CDS YP_003528538.1 292493099 8918104 3176643..3177278 1 NC_013960.1 KEGG: afr:AFE_2084 hypothetical protein; hypothetical protein 3177278 8918104 Nhal_3099 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528538.1 3176643 D 472759 CDS YP_003528539.1 292493100 8918105 3177282..3178517 1 NC_013960.1 PFAM: glycosyl transferase group 1; KEGG: afr:AFE_2083 glycosyl transferase, group 1; group 1 glycosyl transferase 3178517 8918105 Nhal_3100 Nitrosococcus halophilus Nc4 group 1 glycosyl transferase YP_003528539.1 3177282 D 472759 CDS YP_003528540.1 292493101 8918106 3178525..3180393 1 NC_013960.1 KEGG: noc:Noc_1681 alpha amylase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; malto-oligosyltrehalose trehalohydrolase 3180393 8918106 Nhal_3101 Nitrosococcus halophilus Nc4 malto-oligosyltrehalose trehalohydrolase YP_003528540.1 3178525 D 472759 CDS YP_003528541.1 292493102 8918107 3180422..3183334 1 NC_013960.1 KEGG: noc:Noc_1680 (1,4)-alpha-D-glucan 1-alpha-D-glucosylmutase; TIGRFAM: malto-oligosyltrehalose synthase; SMART: alpha amylase catalytic sub domain; malto-oligosyltrehalose synthase 3183334 8918107 Nhal_3102 Nitrosococcus halophilus Nc4 malto-oligosyltrehalose synthase YP_003528541.1 3180422 D 472759 CDS YP_003528542.1 292493103 8918108 3183485..3184024 1 NC_013960.1 KEGG: noc:Noc_1679 hypothetical protein; hypothetical protein 3184024 8918108 Nhal_3103 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528542.1 3183485 D 472759 CDS YP_003528543.1 292493104 8918109 3184033..3184437 1 NC_013960.1 KEGG: noc:Noc_1678 hypothetical protein; hypothetical protein 3184437 8918109 Nhal_3104 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528543.1 3184033 D 472759 CDS YP_003528544.1 292493105 8918111 3184764..3186095 1 NC_013960.1 TIGRFAM: trigger factor; PFAM: trigger factor domain; trigger factor domain protein; peptidylprolyl isomerase FKBP-type; KEGG: noc:Noc_1677 trigger factor; trigger factor 3186095 8918111 Nhal_3105 Nitrosococcus halophilus Nc4 trigger factor YP_003528544.1 3184764 D 472759 CDS YP_003528545.1 292493106 8918112 3186155..3186766 1 NC_013960.1 KEGG: noc:Noc_1676 endopeptidase Clp; TIGRFAM: ATP-dependent Clp protease proteolytic subunit ClpP; PFAM: peptidase S14 ClpP; ATP-dependent Clp protease proteolytic subunit ClpP 3186766 8918112 Nhal_3106 Nitrosococcus halophilus Nc4 ATP-dependent Clp protease proteolytic subunit ClpP YP_003528545.1 3186155 D 472759 CDS YP_003528546.1 292493107 8918113 3186857..3188131 1 NC_013960.1 KEGG: noc:Noc_1675 ATP-dependent protease ATP-binding subunit; TIGRFAM: ATP-dependent Clp protease ATP-binding subunit ClpX; PFAM: ATPase AAA; zinc finger C4 domain protein; ATPase AAA central domain protein; SMART: ATPase AAA; ATP-dependent Clp protease ATP-binding subunit ClpX 3188131 8918113 Nhal_3107 Nitrosococcus halophilus Nc4 ATP-dependent Clp protease ATP-binding subunit ClpX YP_003528546.1 3186857 D 472759 CDS YP_003528547.1 292493108 8918114 3188339..3190783 1 NC_013960.1 KEGG: noc:Noc_1674 peptidase S16, ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16; ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16; ATPase AAA; ATP-dependent protease La 3190783 8918114 Nhal_3108 Nitrosococcus halophilus Nc4 ATP-dependent protease La YP_003528547.1 3188339 D 472759 CDS YP_003528548.1 292493109 8918115 3190811..3191416 1 NC_013960.1 PFAM: sporulation domain protein; KEGG: noc:Noc_1673 hypothetical protein; sporulation domain-containing protein 3191416 8918115 Nhal_3109 Nitrosococcus halophilus Nc4 sporulation domain-containing protein YP_003528548.1 3190811 D 472759 CDS YP_003528549.1 292493110 8918116 3191417..3191923 1 NC_013960.1 PFAM: colicin V production protein; KEGG: noc:Noc_1672 colicin V production protein; colicin V production protein 3191923 8918116 Nhal_3110 Nitrosococcus halophilus Nc4 colicin V production protein YP_003528549.1 3191417 D 472759 CDS YP_003528550.1 292493111 8918117 3191952..3193463 1 NC_013960.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: noc:Noc_1671 amidophosphoribosyltransferase; amidophosphoribosyltransferase 3193463 8918117 Nhal_3111 Nitrosococcus halophilus Nc4 amidophosphoribosyltransferase YP_003528550.1 3191952 D 472759 CDS YP_003528551.1 292493112 8918118 3193515..3194066 1 NC_013960.1 PFAM: protein of unknown function DUF177; KEGG: noc:Noc_1670 hypothetical protein; hypothetical protein 3194066 8918118 Nhal_3112 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528551.1 3193515 D 472759 CDS YP_003528552.1 292493113 8918119 3194114..3194311 1 NC_013960.1 TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: noc:Noc_1669 ribosomal protein S32; 50S ribosomal protein L32 3194311 8918119 Nhal_3113 Nitrosococcus halophilus Nc4 50S ribosomal protein L32 YP_003528552.1 3194114 D 472759 CDS YP_003528553.1 292493114 8918120 3194325..3195347 1 NC_013960.1 TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: noc:Noc_1668 fatty acid synthesis PlsX protein; fatty acid/phospholipid synthesis protein PlsX 3195347 8918120 Nhal_3114 Nitrosococcus halophilus Nc4 fatty acid/phospholipid synthesis protein PlsX YP_003528553.1 3194325 D 472759 CDS YP_003528554.1 292493115 8918121 3195344..3196312 1 NC_013960.1 KEGG: noc:Noc_1667 3-oxoacyl-(acyl carrier protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-ACP synthase III 3196312 8918121 Nhal_3115 Nitrosococcus halophilus Nc4 3-oxoacyl-ACP synthase III YP_003528554.1 3195344 D 472759 CDS YP_003528555.1 292493116 8918122 3196320..3197261 1 NC_013960.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase; KEGG: noc:Noc_1666 malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase 3197261 8918122 Nhal_3116 Nitrosococcus halophilus Nc4 malonyl CoA-acyl carrier protein transacylase YP_003528555.1 3196320 D 472759 CDS YP_003528556.1 292493117 8918123 3197265..3198008 1 NC_013960.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: noc:Noc_1665 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-ACP reductase 3198008 8918123 Nhal_3117 Nitrosococcus halophilus Nc4 3-oxoacyl-ACP reductase YP_003528556.1 3197265 D 472759 CDS YP_003528557.1 292493118 8918124 3198119..3198355 1 NC_013960.1 TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: noc:Noc_1664 acyl carrier protein (ACP); acyl carrier protein 3198355 8918124 Nhal_3118 Nitrosococcus halophilus Nc4 acyl carrier protein YP_003528557.1 3198119 D 472759 CDS YP_003528558.1 292493119 8918125 3198498..3199694 1 NC_013960.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: beta-ketoacyl synthase; KEGG: noc:Noc_1663 beta-ketoacyl synthase; 3-oxoacyl-ACP synthase II 3199694 8918125 Nhal_3119 Nitrosococcus halophilus Nc4 3-oxoacyl-ACP synthase II YP_003528558.1 3198498 D 472759 CDS YP_003528559.1 292493120 8918126 3199728..3200549 1 NC_013960.1 TIGRFAM: aminodeoxychorismate lyase; PFAM: aminotransferase class IV; KEGG: noc:Noc_1662 aminotransferase, class IV; aminodeoxychorismate lyase 3200549 8918126 Nhal_3120 Nitrosococcus halophilus Nc4 aminodeoxychorismate lyase YP_003528559.1 3199728 D 472759 CDS YP_003528560.1 292493121 8918127 3200574..3201584 1 NC_013960.1 PFAM: aminodeoxychorismate lyase; KEGG: noc:Noc_1661 aminodeoxychorismate lyase; aminodeoxychorismate lyase 3201584 8918127 Nhal_3121 Nitrosococcus halophilus Nc4 aminodeoxychorismate lyase YP_003528560.1 3200574 D 472759 CDS YP_003528561.1 292493122 8918128 3201591..3202232 1 NC_013960.1 KEGG: noc:Noc_1660 thymidylate kinase; TIGRFAM: thymidylate kinase; PFAM: thymidylate kinase; thymidylate kinase 3202232 8918128 Nhal_3122 Nitrosococcus halophilus Nc4 thymidylate kinase YP_003528561.1 3201591 D 472759 CDS YP_003528562.1 292493123 8918129 3202270..3203238 1 NC_013960.1 PFAM: DNA polymerase III subunit delta; KEGG: noc:Noc_1659 DNA polymerase III subunit delta'; DNA-directed DNA polymerase 3203238 8918129 Nhal_3123 Nitrosococcus halophilus Nc4 DNA-directed DNA polymerase YP_003528562.1 3202270 D 472759 CDS YP_003528563.1 292493124 8918130 3203225..3203593 1 NC_013960.1 PFAM: type IV pilus assembly PilZ; KEGG: noc:Noc_1658 type IV pilus assembly PilZ; type IV pilus assembly PilZ 3203593 8918130 Nhal_3124 Nitrosococcus halophilus Nc4 type IV pilus assembly PilZ YP_003528563.1 3203225 D 472759 CDS YP_003528564.1 292493125 8918131 3203686..3204468 1 NC_013960.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: noc:Noc_1657 TatD-related deoxyribonuclease; hydrolase, TatD family 3204468 8918131 Nhal_3125 Nitrosococcus halophilus Nc4 hydrolase, TatD family YP_003528564.1 3203686 D 472759 CDS YP_003528565.1 292493126 8918132 3204491..3204661 1 NC_013960.1 hypothetical protein 3204661 8918132 Nhal_3126 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528565.1 3204491 D 472759 CDS YP_003528566.1 292493127 8918133 complement(3204663..3205811) 1 NC_013960.1 PFAM: aminotransferase class V; KEGG: noc:Noc_1656 aminotransferase, class V; class V aminotransferase 3205811 8918133 Nhal_3127 Nitrosococcus halophilus Nc4 class V aminotransferase YP_003528566.1 3204663 R 472759 CDS YP_003528567.1 292493128 8918134 complement(3205837..3206253) 1 NC_013960.1 PFAM: protein of unknown function DUF29; KEGG: msl:Msil_2916 protein of unknown function DUF29; hypothetical protein 3206253 8918134 Nhal_3128 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528567.1 3205837 R 472759 CDS YP_003528568.1 292493129 8918135 complement(3206323..3207204) 1 NC_013960.1 KEGG: noc:Noc_1655 hypothetical protein; hypothetical protein 3207204 8918135 Nhal_3129 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528568.1 3206323 R 472759 CDS YP_003528569.1 292493130 8918136 3207368..3207889 1 NC_013960.1 PFAM: AIG2 family protein; KEGG: hypothetical protein; AIG2 family protein 3207889 8918136 Nhal_3130 Nitrosococcus halophilus Nc4 AIG2 family protein YP_003528569.1 3207368 D 472759 CDS YP_003528570.1 292493131 8918137 3207886..3209292 1 NC_013960.1 TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; KEGG: noc:Noc_1627 fumarate hydratase; fumarate hydratase, class II 3209292 8918137 Nhal_3131 Nitrosococcus halophilus Nc4 fumarate hydratase, class II YP_003528570.1 3207886 D 472759 CDS YP_003528571.1 292493132 8918138 3209716..3211359 1 NC_013960.1 PFAM: sulfate transporter; xanthine/uracil/vitamin C permease; KEGG: noc:Noc_1626 sulfate transporter; sulfate transporter 3211359 8918138 Nhal_3132 Nitrosococcus halophilus Nc4 sulfate transporter YP_003528571.1 3209716 D 472759 CDS YP_003528572.1 292493133 8918139 3211616..3212377 1 NC_013960.1 KEGG: noc:Noc_1625 lipoprotein; lipoprotein 3212377 8918139 Nhal_3133 Nitrosococcus halophilus Nc4 lipoprotein YP_003528572.1 3211616 D 472759 CDS YP_003528573.1 292493134 8918140 3212559..3214046 1 NC_013960.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: noc:Noc_1624 signal transduction histidine kinase; ATP-binding region ATPase domain-containing protein 3214046 8918140 Nhal_3134 Nitrosococcus halophilus Nc4 ATP-binding region ATPase domain-containing protein YP_003528573.1 3212559 D 472759 CDS YP_003528574.1 292493135 8918141 3213997..3215409 1 NC_013960.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: noc:Noc_1623 two component, sigma-54 specific, fis family transcriptional regulator; Fis family transcriptional regulator 3215409 8918141 Nhal_3135 Nitrosococcus halophilus Nc4 Fis family transcriptional regulator YP_003528574.1 3213997 D 472759 CDS YP_003528575.1 292493136 8918142 3215459..3216598 1 NC_013960.1 PFAM: DAHP synthetase I/KDSA; KEGG: noc:Noc_1622 DAHP synthetase I/KdsA; DAHP synthetase I/KDSA 3216598 8918142 Nhal_3136 Nitrosococcus halophilus Nc4 DAHP synthetase I/KDSA YP_003528575.1 3215459 D 472759 CDS YP_003528576.1 292493137 8918143 3216607..3218610 1 NC_013960.1 KEGG: noc:Noc_1901 membrane-bound proton-translocating pyrophosphatase; TIGRFAM: V-type H(+)-translocating pyrophosphatase; PFAM: inorganic H pyrophosphatase; V-type H(+)-translocating pyrophosphatase 3218610 8918143 Nhal_3137 Nitrosococcus halophilus Nc4 V-type H(+)-translocating pyrophosphatase YP_003528576.1 3216607 D 472759 CDS YP_003528577.1 292493138 8918144 complement(3218607..3219392) 1 NC_013960.1 KEGG: net:Neut_1863 hypothetical protein; hypothetical protein 3219392 8918144 Nhal_3138 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528577.1 3218607 R 472759 CDS YP_003528578.1 292493139 8918145 3219815..3221134 1 NC_013960.1 KEGG: noc:Noc_2899 hypothetical protein; hypothetical protein 3221134 8918145 Nhal_3139 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528578.1 3219815 D 472759 CDS YP_003528579.1 292493140 8918146 3221247..3221825 1 NC_013960.1 PFAM: electron transporter SCO1/SenC; KEGG: noc:Noc_2900 electron transporter SCO1/SenC; electron transporter SCO1/SenC 3221825 8918146 Nhal_3140 Nitrosococcus halophilus Nc4 electron transporter SCO1/SenC YP_003528579.1 3221247 D 472759 CDS YP_003528580.1 292493141 8918147 3221818..3222447 1 NC_013960.1 KEGG: noc:Noc_2901 hypothetical protein; hypothetical protein 3222447 8918147 Nhal_3141 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528580.1 3221818 D 472759 CDS YP_003528581.1 292493142 8918148 3222643..3226119 1 NC_013960.1 KEGG: noc:Noc_1642 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: TRCF domain protein; transcription factor CarD; helicase; DEAD/DEAH box helicase; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase; transcription-repair coupling factor 3226119 8918148 Nhal_3142 Nitrosococcus halophilus Nc4 transcription-repair coupling factor YP_003528581.1 3222643 D 472759 CDS YP_003528582.1 292493143 8918149 3226157..3226558 1 NC_013960.1 KEGG: noc:Noc_1641 hypothetical protein; hypothetical protein 3226558 8918149 Nhal_3143 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528582.1 3226157 D 472759 CDS YP_003528583.1 292493144 8918150 complement(3226594..3226878) 1 NC_013960.1 PFAM: protein of unknown function DUF156; KEGG: psa:PST_2529 hypothetical protein; hypothetical protein 3226878 8918150 Nhal_3144 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528583.1 3226594 R 472759 CDS YP_003528584.1 292493145 8918151 3227304..3227729 1 NC_013960.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: mpo:Mpop_4146 protein of unknown function DUF395 YeeE/YedE; hypothetical protein 3227729 8918151 Nhal_3145 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528584.1 3227304 D 472759 CDS YP_003528585.1 292493146 8918152 3227731..3228168 1 NC_013960.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: azc:AZC_2083 YeeE/YedE family protein; hypothetical protein 3228168 8918152 Nhal_3146 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528585.1 3227731 D 472759 CDS YP_003528586.1 292493147 8918153 complement(3228179..3228310) 1 NC_013960.1 hypothetical protein 3228310 8918153 Nhal_3147 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528586.1 3228179 R 472759 CDS YP_003528587.1 292493148 8918154 complement(3228337..3228657) 1 NC_013960.1 KEGG: noc:Noc_1383 MerR family transcriptional regulator; MerR family transcriptional regulator 3228657 8918154 Nhal_3148 Nitrosococcus halophilus Nc4 MerR family transcriptional regulator YP_003528587.1 3228337 R 472759 CDS YP_003528588.1 292493149 8918155 complement(3228661..3229608) 1 NC_013960.1 PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: aeh:Mlg_2130 heat shock protein DnaJ domain-containing protein; chaperone DnaJ domain-containing protein 3229608 8918155 Nhal_3149 Nitrosococcus halophilus Nc4 chaperone DnaJ domain-containing protein YP_003528588.1 3228661 R 472759 CDS YP_003528589.1 292493150 8918156 complement(3229611..3230291) 1 NC_013960.1 PFAM: TrkA-N domain protein; KEGG: noc:Noc_1640 K+ transporters NAD-binding component, TrkA-N; TrkA-N domain-containing protein 3230291 8918156 Nhal_3150 Nitrosococcus halophilus Nc4 TrkA-N domain-containing protein YP_003528589.1 3229611 R 472759 CDS YP_003528590.1 292493151 8918157 complement(3230342..3231829) 1 NC_013960.1 PFAM: cation transporter; KEGG: noc:Noc_1639 cation transporter; cation transporter 3231829 8918157 Nhal_3151 Nitrosococcus halophilus Nc4 cation transporter YP_003528590.1 3230342 R 472759 CDS YP_003528591.1 292493152 8918158 complement(3231897..3232430) 1 NC_013960.1 KEGG: noc:Noc_1638 hypothetical protein; hypothetical protein 3232430 8918158 Nhal_3152 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528591.1 3231897 R 472759 CDS YP_003528592.1 292493153 8918159 complement(3232788..3234590) 1 NC_013960.1 KEGG: nmu:Nmul_A1899 multicopper oxidase type 1; multicopper oxidase type 1 3234590 8918159 Nhal_3153 Nitrosococcus halophilus Nc4 multicopper oxidase type 1 YP_003528592.1 3232788 R 472759 CDS YP_003528593.1 292493154 8918160 3234824..3235114 1 NC_013960.1 PFAM: protein of unknown function UPF0044; KEGG: noc:Noc_1637 hypothetical protein; hypothetical protein 3235114 8918160 Nhal_3154 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528593.1 3234824 D 472759 CDS YP_003528594.1 292493155 8918161 complement(3235140..3236510) 1 NC_013960.1 TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; protein of unknown function UPF0074; KEGG: noc:Noc_1636 ribonuclease BN; ribonuclease BN 3236510 8918161 Nhal_3155 Nitrosococcus halophilus Nc4 ribonuclease BN YP_003528594.1 3235140 R 472759 CDS YP_003528595.1 292493156 8918162 complement(3236528..3237298) 1 NC_013960.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: noc:Noc_1635 hypothetical protein; hypothetical protein 3237298 8918162 Nhal_3156 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528595.1 3236528 R 472759 CDS YP_003528596.1 292493157 8918163 complement(3237291..3238652) 1 NC_013960.1 PFAM: protein of unknown function DUF107; KEGG: noc:Noc_1634 hypothetical protein; hypothetical protein 3238652 8918163 Nhal_3157 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528596.1 3237291 R 472759 CDS YP_003528597.1 292493158 8918164 3238738..3238968 1 NC_013960.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: noc:Noc_1633 bifunctional sulfur carrier protein/thiazole synthase protein; thiamine biosynthesis protein ThiS 3238968 8918164 Nhal_3158 Nitrosococcus halophilus Nc4 thiamine biosynthesis protein ThiS YP_003528597.1 3238738 D 472759 CDS YP_003528598.1 292493159 8918165 3239014..3239802 1 NC_013960.1 PFAM: thiazole biosynthesis protein; KEGG: noc:Noc_1633 bifunctional sulfur carrier protein/thiazole synthase protein; thiazole biosynthesis protein 3239802 8918165 Nhal_3159 Nitrosococcus halophilus Nc4 thiazole biosynthesis protein YP_003528598.1 3239014 D 472759 CDS YP_003528599.1 292493160 8918166 complement(3239816..3240055) 1 NC_013960.1 hypothetical protein 3240055 8918166 Nhal_3160 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528599.1 3239816 R 472759 CDS YP_003528600.1 292493161 8918167 3240205..3241065 1 NC_013960.1 PFAM: beta-lactamase; KEGG: pap:PSPA7_2239 hypothetical protein; beta-lactamase 3241065 8918167 Nhal_3161 Nitrosococcus halophilus Nc4 beta-lactamase YP_003528600.1 3240205 D 472759 CDS YP_003528601.1 292493162 8918168 complement(3241123..3242667) 1 NC_013960.1 PFAM: sigma-54 factor interaction domain-containing protein; KEGG: dat:HRM2_31920 sigma-54 dependent transcriptional regulator; sigma-54 factor interaction domain-containing protein 3242667 8918168 Nhal_3162 Nitrosococcus halophilus Nc4 sigma-54 factor interaction domain-containing protein YP_003528601.1 3241123 R 472759 CDS YP_003528602.1 292493163 8918169 complement(3242711..3244042) 1 NC_013960.1 KEGG: rfr:Rfer_1264 O-antigen polymerase; hypothetical protein 3244042 8918169 Nhal_3163 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528602.1 3242711 R 472759 CDS YP_003528603.1 292493164 8918170 complement(3244032..3244691) 1 NC_013960.1 PFAM: PspA/IM30 family protein; KEGG: hypothetical protein; PspA/IM30 family protein 3244691 8918170 Nhal_3164 Nitrosococcus halophilus Nc4 PspA/IM30 family protein YP_003528603.1 3244032 R 472759 CDS YP_003528604.1 292493165 8918171 3244932..3245120 1 NC_013960.1 hypothetical protein 3245120 8918171 Nhal_3165 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528604.1 3244932 D 472759 CDS YP_003528605.1 292493166 8918172 3245136..3245522 1 NC_013960.1 KEGG: noc:Noc_1628 hypothetical protein; hypothetical protein 3245522 8918172 Nhal_3166 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528605.1 3245136 D 472759 CDS YP_003528606.1 292493167 8918173 complement(3245574..3245804) 1 NC_013960.1 hypothetical protein 3245804 8918173 Nhal_3167 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528606.1 3245574 R 472759 CDS YP_003528607.1 292493168 8918174 complement(3245940..3247130) 1 NC_013960.1 KEGG: mxa:MXAN_6767 hypothetical protein; hypothetical protein 3247130 8918174 Nhal_3168 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528607.1 3245940 R 472759 CDS YP_003528608.1 292493169 8918175 3247720..3250566 1 NC_013960.1 KEGG: noc:Noc_1609 multisensor diguanylate cyclase/phophodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; GAF domain protein; hypothetical protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein; diguanylate cyclase 3250566 8918175 Nhal_3169 Nitrosococcus halophilus Nc4 diguanylate cyclase YP_003528608.1 3247720 D 472759 CDS YP_003528609.1 292493170 8918176 3250547..3251896 1 NC_013960.1 TIGRFAM: glutathione-disulfide reductase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: noc:Noc_1608 glutathione reductase; glutathione-disulfide reductase 3251896 8918176 Nhal_3170 Nitrosococcus halophilus Nc4 glutathione-disulfide reductase YP_003528609.1 3250547 D 472759 CDS YP_003528610.1 292493171 8918177 3251975..3252295 1 NC_013960.1 KEGG: aeh:Mlg_0393 hypothetical protein; hypothetical protein 3252295 8918177 Nhal_3171 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528610.1 3251975 D 472759 CDS YP_003528611.1 292493172 8918178 complement(3252361..3252870) 1 NC_013960.1 KEGG: noc:Noc_1607 sulfate transporter/antisigma-factor antagonist STAS; sulfate transporter/antisigma-factor antagonist STAS 3252870 8918178 Nhal_3172 Nitrosococcus halophilus Nc4 sulfate transporter/antisigma-factor antagonist STAS YP_003528611.1 3252361 R 472759 CDS YP_003528612.1 292493173 8918179 3253053..3254621 1 NC_013960.1 KEGG: noc:Noc_1606 glutamate--cysteine ligase, monofunctional; TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase; glutamate/cysteine ligase 3254621 8918179 Nhal_3173 Nitrosococcus halophilus Nc4 glutamate/cysteine ligase YP_003528612.1 3253053 D 472759 CDS YP_003528613.1 292493174 8918180 complement(3254618..3254818) 1 NC_013960.1 hypothetical protein 3254818 8918180 Nhal_3174 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528613.1 3254618 R 472759 CDS YP_003528614.1 292493175 8918181 complement(3254872..3255789) 1 NC_013960.1 PFAM: ADP-ribosylation/crystallin J1; KEGG: hypothetical protein; poly(ADP-ribose) glycohydrolase 3255789 8918181 Nhal_3175 Nitrosococcus halophilus Nc4 poly(ADP-ribose) glycohydrolase YP_003528614.1 3254872 R 472759 CDS YP_003528615.1 292493176 8918182 complement(3255829..3256305) 1 NC_013960.1 PFAM: PEBP family protein; KEGG: noc:Noc_1605 hypothetical protein; PEBP family protein 3256305 8918182 Nhal_3176 Nitrosococcus halophilus Nc4 PEBP family protein YP_003528615.1 3255829 R 472759 CDS YP_003528616.1 292493177 8918183 3256840..3261495 1 NC_013960.1 PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase subunit alpha domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: noc:Noc_1604 glutamate synthase (ferredoxin); glutamate synthase (ferredoxin) 3261495 8918183 Nhal_3177 Nitrosococcus halophilus Nc4 glutamate synthase (ferredoxin) YP_003528616.1 3256840 D 472759 CDS YP_003528617.1 292493178 8918184 3261495..3262937 1 NC_013960.1 TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: noc:Noc_1603 glutamate synthase subunit beta; glutamate synthase, NADH/NADPH, small subunit 3262937 8918184 Nhal_3178 Nitrosococcus halophilus Nc4 glutamate synthase, NADH/NADPH, small subunit YP_003528617.1 3261495 D 472759 CDS YP_003528618.1 292493179 8918185 3263142..3263471 1 NC_013960.1 KEGG: noc:Noc_1602 hypothetical protein; hypothetical protein 3263471 8918185 Nhal_3179 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528618.1 3263142 D 472759 CDS YP_003528619.1 292493180 8918186 3263642..3264445 1 NC_013960.1 PFAM: aldo/keto reductase; KEGG: mes:Meso_4023 aldo/keto reductase; aldo/keto reductase 3264445 8918186 Nhal_3180 Nitrosococcus halophilus Nc4 aldo/keto reductase YP_003528619.1 3263642 D 472759 CDS YP_003528620.1 292493181 8918188 3265461..3269402 1 NC_013960.1 TIGRFAM: beta-phosphoglucomutase family hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; Haloacid dehalogenase domain protein hydrolase; trehalose-phosphatase; KEGG: noc:Noc_1775 beta-phosphoglucomutase hydrolase; beta-phosphoglucomutase family hydrolase 3269402 8918188 Nhal_3182 Nitrosococcus halophilus Nc4 beta-phosphoglucomutase family hydrolase YP_003528620.1 3265461 D 472759 CDS YP_003528621.1 292493182 8918189 3269399..3270694 1 NC_013960.1 PFAM: aminotransferase class I and II; KEGG: aeh:Mlg_2554 aminotransferase; class I and II aminotransferase 3270694 8918189 Nhal_3183 Nitrosococcus halophilus Nc4 class I and II aminotransferase YP_003528621.1 3269399 D 472759 CDS YP_003528622.1 292493183 8918190 3270791..3271429 1 NC_013960.1 KEGG: noc:Noc_1776 protein-methionine-S-oxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 3271429 8918190 Nhal_3184 Nitrosococcus halophilus Nc4 peptide methionine sulfoxide reductase YP_003528622.1 3270791 D 472759 CDS YP_003528623.1 292493184 8918191 complement(3271459..3273390) 1 NC_013960.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: noc:Noc_1156 peptidase S9, prolyl oligopeptidase active site region; peptidase S9 prolyl oligopeptidase active site domain-containing protein 3273390 8918191 Nhal_3185 Nitrosococcus halophilus Nc4 peptidase S9 prolyl oligopeptidase active site domain-containing protein YP_003528623.1 3271459 R 472759 CDS YP_003528624.1 292493185 8918192 complement(3273432..3273857) 1 NC_013960.1 KEGG: mno:Mnod_0076 hypothetical protein; hypothetical protein 3273857 8918192 Nhal_3186 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528624.1 3273432 R 472759 CDS YP_003528625.1 292493186 8918193 complement(3274041..3274754) 1 NC_013960.1 KEGG: noc:Noc_1155 hypothetical protein; hypothetical protein 3274754 8918193 Nhal_3187 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528625.1 3274041 R 472759 CDS YP_003528626.1 292493187 8918194 complement(3274781..3275422) 1 NC_013960.1 PFAM: lipolytic protein G-D-S-L family; KEGG: noc:Noc_1154 lipolytic protein; G-D-S-L family lipolytic protein 3275422 8918194 Nhal_3188 Nitrosococcus halophilus Nc4 G-D-S-L family lipolytic protein YP_003528626.1 3274781 R 472759 CDS YP_003528627.1 292493188 8918196 3275838..3276740 1 NC_013960.1 PFAM: alpha/beta hydrolase fold; KEGG: noc:Noc_1153 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 3276740 8918196 Nhal_3189 Nitrosococcus halophilus Nc4 alpha/beta hydrolase fold protein YP_003528627.1 3275838 D 472759 CDS YP_003528628.1 292493189 8918197 3276864..3278186 1 NC_013960.1 PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: pat:Patl_2874 twin-arginine translocation pathway signal; Sulfite oxidase 3278186 8918197 Nhal_3190 Nitrosococcus halophilus Nc4 Sulfite oxidase YP_003528628.1 3276864 D 472759 CDS YP_003528629.1 292493190 8918198 3278188..3278553 1 NC_013960.1 KEGG: pat:Patl_2873 hypothetical protein; hypothetical protein 3278553 8918198 Nhal_3191 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528629.1 3278188 D 472759 CDS YP_003528630.1 292493191 8918199 complement(3278572..3278991) 1 NC_013960.1 PFAM: protein of unknown function UPF0047; KEGG: noc:Noc_1152 hypothetical protein; hypothetical protein 3278991 8918199 Nhal_3192 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528630.1 3278572 R 472759 CDS YP_003528631.1 292493192 8918200 3279028..3280224 1 NC_013960.1 KEGG: maq:Maqu_0812 hypothetical protein; hypothetical protein 3280224 8918200 Nhal_3193 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528631.1 3279028 D 472759 CDS YP_003528632.1 292493193 8918201 complement(3280225..3281424) 1 NC_013960.1 KEGG: noc:Noc_1151 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aminotransferase class I and II; aminotransferase class V; O-succinylhomoserine sulfhydrylase 3281424 8918201 Nhal_3194 Nitrosococcus halophilus Nc4 O-succinylhomoserine sulfhydrylase YP_003528632.1 3280225 R 472759 CDS YP_003528633.1 292493194 8918202 3281475..3281723 1 NC_013960.1 hypothetical protein 3281723 8918202 Nhal_3195 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528633.1 3281475 D 472759 CDS YP_003528634.1 292493195 8918203 complement(3282017..3283231) 1 NC_013960.1 KEGG: noc:Noc_1150 hypothetical protein; hypothetical protein 3283231 8918203 Nhal_3196 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528634.1 3282017 R 472759 CDS YP_003528635.1 292493196 8918204 complement(3283236..3283697) 1 NC_013960.1 KEGG: noc:Noc_1149 hypothetical protein; hypothetical protein 3283697 8918204 Nhal_3197 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528635.1 3283236 R 472759 CDS YP_003528636.1 292493197 8918205 complement(3283767..3284546) 1 NC_013960.1 KEGG: noc:Noc_1148 hypothetical protein; hypothetical protein 3284546 8918205 Nhal_3198 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528636.1 3283767 R 472759 CDS YP_003528637.1 292493198 8918206 complement(3284670..3284990) 1 NC_013960.1 hypothetical protein 3284990 8918206 Nhal_3199 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528637.1 3284670 R 472759 CDS YP_003528638.1 292493199 8918207 complement(3285036..3285158) 1 NC_013960.1 hypothetical protein 3285158 8918207 Nhal_3200 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528638.1 3285036 R 472759 CDS YP_003528639.1 292493200 8918209 complement(3285699..3286055) 1 NC_013960.1 PFAM: MerR family transcriptional regulator; SMART: MerR family transcriptional regulator; KEGG: noc:Noc_1147 MerR family transcriptional regulator; MerR family transcriptional regulator 3286055 8918209 Nhal_3201 Nitrosococcus halophilus Nc4 MerR family transcriptional regulator YP_003528639.1 3285699 R 472759 CDS YP_003528640.1 292493201 8918210 complement(3286033..3286335) 1 NC_013960.1 KEGG: noc:Noc_1146 integration host factor subunit alpha; TIGRFAM: integration host factor, subunit alpha; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; integration host factor subunit alpha 3286335 8918210 Nhal_3202 Nitrosococcus halophilus Nc4 integration host factor subunit alpha YP_003528640.1 3286033 R 472759 CDS YP_003528641.1 292493202 8918211 complement(3286339..3288717) 1 NC_013960.1 TIGRFAM: phenylalanyl-tRNA synthetase subunit beta; KEGG: noc:Noc_1145 phenylalanyl-tRNA synthetase subunit beta; phenylalanyl-tRNA synthetase subunit beta 3288717 8918211 Nhal_3203 Nitrosococcus halophilus Nc4 phenylalanyl-tRNA synthetase subunit beta YP_003528641.1 3286339 R 472759 CDS YP_003528642.1 292493203 8918212 complement(3288741..3289760) 1 NC_013960.1 KEGG: noc:Noc_1144 phenylalanyl-tRNA synthetase, alpha subunit; TIGRFAM: phenylalanyl-tRNA synthetase, subunit alpha; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; phenylalanyl-tRNA synthetase subunit alpha 3289760 8918212 Nhal_3204 Nitrosococcus halophilus Nc4 phenylalanyl-tRNA synthetase subunit alpha YP_003528642.1 3288741 R 472759 CDS YP_003528643.1 292493204 8918213 complement(3289896..3290255) 1 NC_013960.1 TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; KEGG: noc:Noc_1143 50S ribosomal protein L20; 50S ribosomal protein L20 3290255 8918213 Nhal_3205 Nitrosococcus halophilus Nc4 50S ribosomal protein L20 YP_003528643.1 3289896 R 472759 CDS YP_003528644.1 292493205 8918214 complement(3290268..3290465) 1 NC_013960.1 TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: noc:Noc_1142 50S ribosomal protein L35; 50S ribosomal protein L35 3290465 8918214 Nhal_3206 Nitrosococcus halophilus Nc4 50S ribosomal protein L35 YP_003528644.1 3290268 R 472759 CDS YP_003528645.1 292493206 8918215 complement(3290541..3291038) 1 NC_013960.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: noc:Noc_1141 initiation factor 3; translation initiation factor IF-3 3291038 8918215 Nhal_3207 Nitrosococcus halophilus Nc4 translation initiation factor IF-3 YP_003528645.1 3290541 R 472759 CDS YP_003528646.1 292493207 8918216 complement(3291060..3292994) 1 NC_013960.1 TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); TGS domain protein; anticodon-binding domain protein; threonyl/alanyl tRNA synthetase SAD; KEGG: noc:Noc_1140 threonyl-tRNA synthetase, class IIA; threonyl-tRNA synthetase 3292994 8918216 Nhal_3208 Nitrosococcus halophilus Nc4 threonyl-tRNA synthetase YP_003528646.1 3291060 R 472759 CDS YP_003528647.1 292493208 8918218 complement(3293290..3295335) 1 NC_013960.1 KEGG: noc:Noc_1139 excinuclease ABC subunit B; TIGRFAM: excinuclease ABC subunit B; PFAM: helicase; UvrB/UvrC protein; SMART: DEAD-like helicase ; helicase; excinuclease ABC subunit B 3295335 8918218 Nhal_3209 Nitrosococcus halophilus Nc4 excinuclease ABC subunit B YP_003528647.1 3293290 R 472759 CDS YP_003528648.1 292493209 8918219 3295428..3296615 1 NC_013960.1 PFAM: aminotransferase class I and II; KEGG: noc:Noc_1138 aminotransferase, class I and II; class I and II aminotransferase 3296615 8918219 Nhal_3210 Nitrosococcus halophilus Nc4 class I and II aminotransferase YP_003528648.1 3295428 D 472759 CDS YP_003528649.1 292493210 8918221 complement(3297160..3297597) 1 NC_013960.1 PFAM: protein of unknown function DUF29; KEGG: noc:Noc_0766 hypothetical protein; hypothetical protein 3297597 8918221 Nhal_3211 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528649.1 3297160 R 472759 CDS YP_003528650.1 292493211 8918222 complement(3297663..3297863) 1 NC_013960.1 hypothetical protein 3297863 8918222 Nhal_3212 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528650.1 3297663 R 472759 CDS YP_003528651.1 292493212 8918224 complement(3298309..3299454) 1 NC_013960.1 PFAM: transposase IS4 family protein; KEGG: aby:ABAYE3624 IS4 family transposase; transposase IS4 family protein 3299454 8918224 Nhal_3214 Nitrosococcus halophilus Nc4 transposase IS4 family protein YP_003528651.1 3298309 R 472759 CDS YP_003528652.1 292493213 8918225 complement(3299584..3300420) 1 NC_013960.1 TIGRFAM: hydrolase, ortholog 2, exosortase system type 1 associated; KEGG: noc:Noc_1962 esterase/lipase/thioesterase family protein; hydrolase, exosortase system type 1 associated 3300420 8918225 Nhal_3215 Nitrosococcus halophilus Nc4 hydrolase, exosortase system type 1 associated YP_003528652.1 3299584 R 472759 CDS YP_003528653.1 292493214 8918226 complement(3300417..3300689) 1 NC_013960.1 KEGG: noc:Noc_1963 hypothetical protein; hypothetical protein 3300689 8918226 Nhal_3216 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528653.1 3300417 R 472759 CDS YP_003528654.1 292493215 8918227 complement(3300714..3301406) 1 NC_013960.1 KEGG: rfr:Rfer_0693 hypothetical protein; hypothetical protein 3301406 8918227 Nhal_3217 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528654.1 3300714 R 472759 CDS YP_003528655.1 292493216 8918228 complement(3301475..3301876) 1 NC_013960.1 hypothetical protein 3301876 8918228 Nhal_3218 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528655.1 3301475 R 472759 CDS YP_003528656.1 292493217 8918229 complement(3301873..3303447) 1 NC_013960.1 PFAM: GMC oxidoreductase; KEGG: pla:Plav_1858 FAD dependent oxidoreductase; GMC oxidoreductase 3303447 8918229 Nhal_3219 Nitrosococcus halophilus Nc4 GMC oxidoreductase YP_003528656.1 3301873 R 472759 CDS YP_003528657.1 292493218 8918230 complement(3303479..3304432) 1 NC_013960.1 KEGG: nmu:Nmul_A2517 hypothetical protein; hypothetical protein 3304432 8918230 Nhal_3220 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528657.1 3303479 R 472759 CDS YP_003528658.1 292493219 8918231 complement(3304429..3305388) 1 NC_013960.1 PFAM: polysaccharide deacetylase; KEGG: nmu:Nmul_A2518 hypothetical protein; polysaccharide deacetylase 3305388 8918231 Nhal_3221 Nitrosococcus halophilus Nc4 polysaccharide deacetylase YP_003528658.1 3304429 R 472759 CDS YP_003528659.1 292493220 8918232 complement(3305428..3307248) 1 NC_013960.1 PFAM: asparagine synthase; KEGG: noc:Noc_1965 asparagine synthase, glutamine-hydrolyzing; Asparagine synthase 3307248 8918232 Nhal_3222 Nitrosococcus halophilus Nc4 Asparagine synthase YP_003528659.1 3305428 R 472759 CDS YP_003528660.1 292493221 8918233 complement(3307460..3308116) 1 NC_013960.1 KEGG: noc:Noc_1966 hypothetical protein; hypothetical protein 3308116 8918233 Nhal_3223 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528660.1 3307460 R 472759 CDS YP_003528661.1 292493222 8918234 complement(3308308..3310158) 1 NC_013960.1 TIGRFAM: FkbH like protein; HAD-superfamily phosphatase, subfamily IIIC; KEGG: nmu:Nmul_A2515 FkbH domain-containing protein; FkbH like protein 3310158 8918234 Nhal_3224 Nitrosococcus halophilus Nc4 FkbH like protein YP_003528661.1 3308308 R 472759 CDS YP_003528662.1 292493223 8918235 complement(3310284..3310973) 1 NC_013960.1 KEGG: nmu:Nmul_A2516 methyltransferase; methyltransferase 3310973 8918235 Nhal_3225 Nitrosococcus halophilus Nc4 methyltransferase YP_003528662.1 3310284 R 472759 CDS YP_003528663.1 292493224 8918236 complement(3311016..3312038) 1 NC_013960.1 PFAM: polysaccharide deacetylase; KEGG: noc:Noc_1967 polysaccharide deacetylase; polysaccharide deacetylase 3312038 8918236 Nhal_3226 Nitrosococcus halophilus Nc4 polysaccharide deacetylase YP_003528663.1 3311016 R 472759 CDS YP_003528664.1 292493225 8918237 complement(3312098..3314152) 1 NC_013960.1 PFAM: methyltransferase type 11; aminoglycoside phosphotransferase; methyltransferase type 12; protein of unknown function DUF343; KEGG: noc:Noc_1968 UbiE/COQ5 methyltransferase; type 11 methyltransferase 3314152 8918237 Nhal_3227 Nitrosococcus halophilus Nc4 type 11 methyltransferase YP_003528664.1 3312098 R 472759 CDS YP_003528665.1 292493226 8918239 complement(3314487..3316817) 1 NC_013960.1 KEGG: noc:Noc_1969 hypothetical protein; hypothetical protein 3316817 8918239 Nhal_3229 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528665.1 3314487 R 472759 CDS YP_003528666.1 292493227 8918240 complement(3316839..3318077) 1 NC_013960.1 PFAM: Kelch repeat protein; Kelch repeat-containing protein; KEGG: noc:Noc_1970 kelch repeat-containing protein; Kelch repeat-containing protein 3318077 8918240 Nhal_3230 Nitrosococcus halophilus Nc4 Kelch repeat-containing protein YP_003528666.1 3316839 R 472759 CDS YP_003528667.1 292493228 8918241 complement(3318403..3319761) 1 NC_013960.1 KEGG: noc:Noc_1971 capsular polysaccharide biosynthesis protein CapK; capsular polysaccharide biosynthesis protein CapK 3319761 8918241 Nhal_3231 Nitrosococcus halophilus Nc4 capsular polysaccharide biosynthesis protein CapK YP_003528667.1 3318403 R 472759 CDS YP_003528668.1 292493229 8918242 complement(3319758..3321008) 1 NC_013960.1 PFAM: glycosyl transferase group 1; KEGG: noc:Noc_1972 glycosyl transferase, group 1; group 1 glycosyl transferase 3321008 8918242 Nhal_3232 Nitrosococcus halophilus Nc4 group 1 glycosyl transferase YP_003528668.1 3319758 R 472759 CDS YP_003528669.1 292493230 8918243 complement(3320971..3322221) 1 NC_013960.1 PFAM: glycosyl transferase group 1; KEGG: noc:Noc_1973 glycosyl transferase, group 1; group 1 glycosyl transferase 3322221 8918243 Nhal_3233 Nitrosococcus halophilus Nc4 group 1 glycosyl transferase YP_003528669.1 3320971 R 472759 CDS YP_003528670.1 292493231 8918244 complement(3322218..3324785) 1 NC_013960.1 KEGG: noc:Noc_1974 hypothetical protein; hypothetical protein 3324785 8918244 Nhal_3234 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528670.1 3322218 R 472759 CDS YP_003528671.1 292493232 8918245 complement(3324923..3326890) 1 NC_013960.1 KEGG: noc:Noc_1975 asparagine synthase, glutamine-hydrolyzing; TIGRFAM: exosortase 1 system-associated amidotransferase 1; asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II; exosortase 1 system-associated amidotransferase 1 3326890 8918245 Nhal_3235 Nitrosococcus halophilus Nc4 exosortase 1 system-associated amidotransferase 1 YP_003528671.1 3324923 R 472759 CDS YP_003528672.1 292493233 8918246 complement(3326955..3328115) 1 NC_013960.1 KEGG: noc:Noc_1976 UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 3328115 8918246 Nhal_3236 Nitrosococcus halophilus Nc4 UDP-N-acetylglucosamine 2-epimerase YP_003528672.1 3326955 R 472759 CDS YP_003528673.1 292493234 8918247 complement(3328136..3329365) 1 NC_013960.1 TIGRFAM: sugar transferase, PEP-CTERM/EpsH1 system associated; PFAM: glycosyl transferase group 1; KEGG: noc:Noc_1977 glycosyl transferase, group 1; sugar transferase 3329365 8918247 Nhal_3237 Nitrosococcus halophilus Nc4 sugar transferase YP_003528673.1 3328136 R 472759 CDS YP_003528674.1 292493235 8918248 complement(3329343..3330986) 1 NC_013960.1 TIGRFAM: exosortase 1; eight transmembrane protein EpsH; EpsI family protein; KEGG: noc:Noc_1978 hypothetical protein; exosortase 1 3330986 8918248 Nhal_3238 Nitrosococcus halophilus Nc4 exosortase 1 YP_003528674.1 3329343 R 472759 CDS YP_003528675.1 292493236 8918249 complement(3330986..3332206) 1 NC_013960.1 TIGRFAM: sugar transferase, PEP-CTERM/EpsH1 system associated; KEGG: noc:Noc_1979 glycosyl transferase group 1; sugar transferase 3332206 8918249 Nhal_3239 Nitrosococcus halophilus Nc4 sugar transferase YP_003528675.1 3330986 R 472759 CDS YP_003528676.1 292493237 8918250 complement(3332214..3333272) 1 NC_013960.1 TIGRFAM: FemAB-related protein, PEP-CTERM system-associated; KEGG: noc:Noc_1980 hypothetical protein; FemAB-like protein 3333272 8918250 Nhal_3240 Nitrosococcus halophilus Nc4 FemAB-like protein YP_003528676.1 3332214 R 472759 CDS YP_003528677.1 292493238 8918251 complement(3333262..3334101) 1 NC_013960.1 TIGRFAM: polysaccharide deactylase family protein, PEP-CTERM locus subfamily; PFAM: polysaccharide deacetylase; KEGG: noc:Noc_1981 polysaccharide deacetylase; polysaccharide deactylase family protein 3334101 8918251 Nhal_3241 Nitrosococcus halophilus Nc4 polysaccharide deactylase family protein YP_003528677.1 3333262 R 472759 CDS YP_003528678.1 292493239 8918252 complement(3334341..3336059) 1 NC_013960.1 TIGRFAM: PEP-CTERM system associated protein; KEGG: noc:Noc_1982 hypothetical protein; PEP-CTERM system associated protein 3336059 8918252 Nhal_3242 Nitrosococcus halophilus Nc4 PEP-CTERM system associated protein YP_003528678.1 3334341 R 472759 CDS YP_003528679.1 292493240 8918253 complement(3336108..3336992) 1 NC_013960.1 KEGG: noc:Noc_1983 protein-tyrosine kinase; protein-tyrosine kinase 3336992 8918253 Nhal_3243 Nitrosococcus halophilus Nc4 protein-tyrosine kinase YP_003528679.1 3336108 R 472759 CDS YP_003528680.1 292493241 8918254 complement(3337202..3338806) 1 NC_013960.1 TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; PFAM: lipopolysaccharide biosynthesis protein; KEGG: noc:Noc_1984 lipopolysaccharide biosynthesis; polysaccharide chain length determinant protein 3338806 8918254 Nhal_3244 Nitrosococcus halophilus Nc4 polysaccharide chain length determinant protein YP_003528680.1 3337202 R 472759 CDS YP_003528681.1 292493242 8918255 complement(3338818..3339459) 1 NC_013960.1 TIGRFAM: polysaccharide export protein, PEP-CTERM sytem-associated; PFAM: polysaccharide export protein; KEGG: noc:Noc_1985 polysaccharide export protein; polysaccharide export protein 3339459 8918255 Nhal_3245 Nitrosococcus halophilus Nc4 polysaccharide export protein YP_003528681.1 3338818 R 472759 CDS YP_003528682.1 292493243 8918257 3341281..3344073 1 NC_013960.1 KEGG: noc:Noc_1987 hypothetical protein; TIGRFAM: PEP-CTERM system TPR-repeat lipoprotein; PFAM: hypothetical protein; hypothetical protein; SMART: Tetratricopeptide domain protein; PEP-CTERM system TPR-repeat lipoprotein 3344073 8918257 Nhal_3247 Nitrosococcus halophilus Nc4 PEP-CTERM system TPR-repeat lipoprotein YP_003528682.1 3341281 D 472759 CDS YP_003528683.1 292493244 8918258 3344712..3345581 1 NC_013960.1 PFAM: protein of unknown function DUF1555; KEGG: nmu:Nmul_A0373 hypothetical protein; hypothetical protein 3345581 8918258 Nhal_3248 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528683.1 3344712 D 472759 CDS YP_003528684.1 292493245 8918259 complement(3345949..3346782) 1 NC_013960.1 PFAM: dehydrogenase; KEGG: nmu:Nmul_A0372 dehydrogenase catalytic domain-containing protein; dehydrogenase 3346782 8918259 Nhal_3249 Nitrosococcus halophilus Nc4 dehydrogenase YP_003528684.1 3345949 R 472759 CDS YP_003528685.1 292493246 8918260 complement(3346779..3347462) 1 NC_013960.1 KEGG: noc:Noc_1989 glycan acetyltransferase; glycan acetyltransferase 3347462 8918260 Nhal_3250 Nitrosococcus halophilus Nc4 glycan acetyltransferase YP_003528685.1 3346779 R 472759 CDS YP_003528686.1 292493247 8918261 complement(3347554..3348765) 1 NC_013960.1 KEGG: noc:Noc_1988 glycosyl transferase; glycosyl transferase 3348765 8918261 Nhal_3251 Nitrosococcus halophilus Nc4 glycosyl transferase YP_003528686.1 3347554 R 472759 CDS YP_003528687.1 292493248 8918262 3349484..3349597 1 NC_013960.1 hypothetical protein 3349597 8918262 Nhal_3252 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528687.1 3349484 D 472759 CDS YP_003528688.1 292493249 8918263 3349635..3349808 1 NC_013960.1 hypothetical protein 3349808 8918263 Nhal_3253 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528688.1 3349635 D 472759 CDS YP_003528689.1 292493250 8918264 3350226..3351245 1 NC_013960.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: noc:Noc_1992 secretion protein HlyD; RND family efflux transporter MFP subunit 3351245 8918264 Nhal_3254 Nitrosococcus halophilus Nc4 RND family efflux transporter MFP subunit YP_003528689.1 3350226 D 472759 CDS YP_003528690.1 292493251 8918265 3351288..3354374 1 NC_013960.1 PFAM: acriflavin resistance protein; KEGG: noc:Noc_1993 acriflavin resistance protein; acriflavin resistance protein 3354374 8918265 Nhal_3255 Nitrosococcus halophilus Nc4 acriflavin resistance protein YP_003528690.1 3351288 D 472759 CDS YP_003528691.1 292493252 8918266 complement(3354442..3356451) 1 NC_013960.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: noc:Noc_1994 molybdopterin/thiamine biosynthesis family protein; UBA/THIF-type NAD/FAD binding protein 3356451 8918266 Nhal_3256 Nitrosococcus halophilus Nc4 UBA/THIF-type NAD/FAD binding protein YP_003528691.1 3354442 R 472759 CDS YP_003528692.1 292493253 8918267 complement(3356617..3356868) 1 NC_013960.1 hypothetical protein 3356868 8918267 Nhal_3257 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528692.1 3356617 R 472759 CDS YP_003528693.1 292493254 8918268 3357245..3357994 1 NC_013960.1 KEGG: noc:Noc_1995 hypothetical protein; hypothetical protein 3357994 8918268 Nhal_3258 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528693.1 3357245 D 472759 CDS YP_003528694.1 292493255 8918269 3358328..3359212 1 NC_013960.1 KEGG: noc:Noc_1996 hypothetical protein; hypothetical protein 3359212 8918269 Nhal_3259 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528694.1 3358328 D 472759 CDS YP_003528695.1 292493256 8918270 complement(3359773..3359931) 1 NC_013960.1 KEGG: neu:NE2230 hypothetical protein; hypothetical protein 3359931 8918270 Nhal_3260 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528695.1 3359773 R 472759 CDS YP_003528696.1 292493257 8918271 complement(3359915..3360055) 1 NC_013960.1 hypothetical protein 3360055 8918271 Nhal_3261 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528696.1 3359915 R 472759 CDS YP_003528697.1 292493258 8918272 3360288..3360497 1 NC_013960.1 KEGG: bvi:Bcep1808_3249 hypothetical protein; hypothetical protein 3360497 8918272 Nhal_3262 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528697.1 3360288 D 472759 CDS YP_003528698.1 292493259 8918273 3360497..3360775 1 NC_013960.1 KEGG: bvi:Bcep1808_3250 hypothetical protein; hypothetical protein 3360775 8918273 Nhal_3263 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528698.1 3360497 D 472759 CDS YP_003528699.1 292493260 8918275 complement(3361103..3361504) 1 NC_013960.1 KEGG: neu:NE2230 hypothetical protein; hypothetical protein 3361504 8918275 Nhal_3265 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528699.1 3361103 R 472759 CDS YP_003528700.1 292493261 8918276 3361703..3361936 1 NC_013960.1 PFAM: SpoVT/AbrB domain protein; KEGG: rpb:RPB_3730 SpoVT/AbrB-like; SpoVT/AbrB domain-containing protein 3361936 8918276 Nhal_3266 Nitrosococcus halophilus Nc4 SpoVT/AbrB domain-containing protein YP_003528700.1 3361703 D 472759 CDS YP_003528701.1 292493262 8918277 3361936..3362352 1 NC_013960.1 PFAM: PilT protein domain protein; KEGG: tgr:Tgr7_1319 PilT protein domain protein; PilT protein domain-containing protein 3362352 8918277 Nhal_3267 Nitrosococcus halophilus Nc4 PilT protein domain-containing protein YP_003528701.1 3361936 D 472759 CDS YP_003528702.1 292493263 8918278 complement(3362360..3362485) 1 NC_013960.1 hypothetical protein 3362485 8918278 Nhal_3268 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528702.1 3362360 R 472759 CDS YP_003528703.1 292493264 8918279 complement(3362594..3363949) 1 NC_013960.1 KEGG: noc:Noc_1997 sigma-54 specific fis family two component transcriptional regulator; TIGRFAM: PEP-CTERM system response regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; response regulator receiver; PEP-CTERM system response regulator 3363949 8918279 Nhal_3269 Nitrosococcus halophilus Nc4 PEP-CTERM system response regulator YP_003528703.1 3362594 R 472759 CDS YP_003528704.1 292493265 8918280 complement(3363946..3366024) 1 NC_013960.1 KEGG: noc:Noc_1998 signal transduction histidine kinase; TIGRFAM: PEP-CTERM system histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PEP-CTERM system histidine kinase 3366024 8918280 Nhal_3270 Nitrosococcus halophilus Nc4 PEP-CTERM system histidine kinase YP_003528704.1 3363946 R 472759 CDS YP_003528705.1 292493266 8918281 complement(3366047..3367444) 1 NC_013960.1 KEGG: noc:Noc_1999 undecaprenyl-phosphate galactosephosphotransferase; TIGRFAM: sugar transferase, PEP-CTERM system associated; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; sugar transferase 3367444 8918281 Nhal_3271 Nitrosococcus halophilus Nc4 sugar transferase YP_003528705.1 3366047 R 472759 CDS YP_003528706.1 292493267 8918283 3367921..3368505 1 NC_013960.1 PFAM: cytochrome C class I; KEGG: noc:Noc_2000 cytochrome c, class I; cytochrome C class I 3368505 8918283 Nhal_3272 Nitrosococcus halophilus Nc4 cytochrome C class I YP_003528706.1 3367921 D 472759 CDS YP_003528707.1 292493268 8918284 3368453..3369190 1 NC_013960.1 PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: neu:NE2386 SH3 domain-containing protein; SH3 type 3 domain-containing protein 3369190 8918284 Nhal_3273 Nitrosococcus halophilus Nc4 SH3 type 3 domain-containing protein YP_003528707.1 3368453 D 472759 CDS YP_003528708.1 292493269 8918285 complement(3369431..3371302) 1 NC_013960.1 KEGG: noc:Noc_2001 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dihydroxy-acid dehydratase 3371302 8918285 Nhal_3274 Nitrosococcus halophilus Nc4 dihydroxy-acid dehydratase YP_003528708.1 3369431 R 472759 CDS YP_003528709.1 292493270 8918286 complement(3371486..3373492) 1 NC_013960.1 TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: noc:Noc_2002 UvrD/REP helicase; ATP-dependent DNA helicase Rep 3373492 8918286 Nhal_3275 Nitrosococcus halophilus Nc4 ATP-dependent DNA helicase Rep YP_003528709.1 3371486 R 472759 CDS YP_003528710.1 292493271 8918287 complement(3373479..3374996) 1 NC_013960.1 KEGG: noc:Noc_2003 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; Mg chelatase subunit ChlI 3374996 8918287 Nhal_3276 Nitrosococcus halophilus Nc4 Mg chelatase subunit ChlI YP_003528710.1 3373479 R 472759 CDS YP_003528711.1 292493272 8918288 complement(3375042..3375359) 1 NC_013960.1 PFAM: protein of unknown function DUF526; KEGG: noc:Noc_2004 hypothetical protein; hypothetical protein 3375359 8918288 Nhal_3277 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528711.1 3375042 R 472759 CDS YP_003528712.1 292493273 8918289 complement(3375468..3376259) 1 NC_013960.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; transposase IS891/IS1136/IS1341 family; KEGG: pin:Ping_3063 transposase, IS605 OrfB family protein; transposase, IS605 OrfB family 3376259 8918289 Nhal_3278 Nitrosococcus halophilus Nc4 transposase, IS605 OrfB family YP_003528712.1 3375468 R 472759 CDS YP_003528713.1 292493274 8918290 3376560..3377798 1 NC_013960.1 PFAM: protein of unknown function DUF1597; KEGG: noc:Noc_2005 hypothetical protein; hypothetical protein 3377798 8918290 Nhal_3279 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528713.1 3376560 D 472759 CDS YP_003528714.1 292493275 8918291 3377844..3379124 1 NC_013960.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: tgr:Tgr7_3120 ammonium transporter; ammonium transporter 3379124 8918291 Nhal_3280 Nitrosococcus halophilus Nc4 ammonium transporter YP_003528714.1 3377844 D 472759 CDS YP_003528715.1 292493276 8918292 3379515..3380831 1 NC_013960.1 KEGG: noc:Noc_2013 N-acetylglutamate synthase; TIGRFAM: amino-acid N-acetyltransferase; PFAM: aspartate/glutamate/uridylate kinase; GCN5-related N-acetyltransferase; amino-acid N-acetyltransferase 3380831 8918292 Nhal_3281 Nitrosococcus halophilus Nc4 amino-acid N-acetyltransferase YP_003528715.1 3379515 D 472759 CDS YP_003528716.1 292493277 8918293 complement(3381035..3382474) 1 NC_013960.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; GatB/Yqey domain protein; GatB central domain protein; KEGG: noc:Noc_2014 aspartyl/glutamyl-tRNA amidotransferase subunit B; glutamyl-tRNA(Gln) amidotransferase subunit beta 3382474 8918293 Nhal_3282 Nitrosococcus halophilus Nc4 glutamyl-tRNA(Gln) amidotransferase subunit beta YP_003528716.1 3381035 R 472759 CDS YP_003528717.1 292493278 8918294 complement(3382505..3383896) 1 NC_013960.1 KEGG: noc:Noc_2015 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 3383896 8918294 Nhal_3283 Nitrosococcus halophilus Nc4 nucleotide sugar dehydrogenase YP_003528717.1 3382505 R 472759 CDS YP_003528718.1 292493279 8918295 3384171..3385166 1 NC_013960.1 TIGRFAM: secretion ATPase, PEP-CTERM locus subfamily; SMART: ATPase AAA; KEGG: noc:Noc_2016 ATPase; secretion ATPase 3385166 8918295 Nhal_3284 Nitrosococcus halophilus Nc4 secretion ATPase YP_003528718.1 3384171 D 472759 CDS YP_003528719.1 292493280 8918296 complement(3385171..3385836) 1 NC_013960.1 TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: haloacid dehalogenase; KEGG: noc:Noc_2017 HAD family hydrolase; HAD-superfamily hydrolase 3385836 8918296 Nhal_3285 Nitrosococcus halophilus Nc4 HAD-superfamily hydrolase YP_003528719.1 3385171 R 472759 CDS YP_003528720.1 292493281 8918297 3385979..3386527 1 NC_013960.1 PFAM: NUDIX hydrolase; KEGG: noc:Noc_2018 NUDIX hydrolase; NUDIX hydrolase 3386527 8918297 Nhal_3286 Nitrosococcus halophilus Nc4 NUDIX hydrolase YP_003528720.1 3385979 D 472759 CDS YP_003528721.1 292493282 8918300 complement(3387562..3388110) 1 NC_013960.1 PFAM: NUDIX hydrolase; KEGG: noc:Noc_2018 NUDIX hydrolase; NUDIX hydrolase 3388110 8918300 Nhal_3289 Nitrosococcus halophilus Nc4 NUDIX hydrolase YP_003528721.1 3387562 R 472759 CDS YP_003528722.1 292493283 8918301 3389007..3390455 1 NC_013960.1 TIGRFAM: undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: mfa:Mfla_2028 sugar transferase; UDP-phosphate glucose phosphotransferase 3390455 8918301 Nhal_3290 Nitrosococcus halophilus Nc4 UDP-phosphate glucose phosphotransferase YP_003528722.1 3389007 D 472759 CDS YP_003528723.1 292493284 8918303 3391885..3393045 1 NC_013960.1 PFAM: Fibronectin type III domain protein; KEGG: dps:DP1469 fimbrial biogenesis protein PilY1; Fibronectin type III domain-containing protein 3393045 8918303 Nhal_3292 Nitrosococcus halophilus Nc4 Fibronectin type III domain-containing protein YP_003528723.1 3391885 D 472759 CDS YP_003528724.1 292493285 8918304 3393910..3395100 1 NC_013960.1 PFAM: Fibronectin type III domain protein; KEGG: dps:DP1469 fimbrial biogenesis protein PilY1; Fibronectin type III domain-containing protein 3395100 8918304 Nhal_3293 Nitrosococcus halophilus Nc4 Fibronectin type III domain-containing protein YP_003528724.1 3393910 D 472759 CDS YP_003528725.1 292493286 8918305 3395193..3396065 1 NC_013960.1 KEGG: hch:HCH_03372 hypothetical protein; hypothetical protein 3396065 8918305 Nhal_3294 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528725.1 3395193 D 472759 CDS YP_003528726.1 292493287 8918306 complement(3396156..3397256) 1 NC_013960.1 KEGG: hch:HCH_03381 hypothetical protein; hypothetical protein 3397256 8918306 Nhal_3295 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528726.1 3396156 R 472759 CDS YP_003528727.1 292493288 8918307 complement(3397358..3397822) 1 NC_013960.1 KEGG: mxa:MXAN_0956 hypothetical protein; hypothetical protein 3397822 8918307 Nhal_3296 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528727.1 3397358 R 472759 CDS YP_003528728.1 292493289 8918308 join(3397883..3398161,3398161..3398601) 1 NC_013960.1 KEGG: ngk:NGK_0512 hypothetical protein; hypothetical protein 3398601 8918308 Nhal_3297 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528728.1 3397883 D 472759 CDS YP_003528729.1 292493290 8918309 3398842..3398976 1 NC_013960.1 hypothetical protein 3398976 8918309 Nhal_3298 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528729.1 3398842 D 472759 CDS YP_003528730.1 292493291 8918310 complement(3399229..3400059) 1 NC_013960.1 KEGG: hch:HCH_03372 hypothetical protein; hypothetical protein 3400059 8918310 Nhal_3299 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528730.1 3399229 R 472759 CDS YP_003528731.1 292493292 8918312 complement(3400602..3401522) 1 NC_013960.1 KEGG: dps:DPPB74 glycosyltransferase; glycosyltransferase 3401522 8918312 Nhal_3301 Nitrosococcus halophilus Nc4 glycosyltransferase YP_003528731.1 3400602 R 472759 CDS YP_003528732.1 292493293 8918313 complement(3401970..3402911) 1 NC_013960.1 PFAM: sulfotransferase; KEGG: afr:AFE_1817 sulfotransferase domain protein; sulfotransferase 3402911 8918313 Nhal_3302 Nitrosococcus halophilus Nc4 sulfotransferase YP_003528732.1 3401970 R 472759 CDS YP_003528733.1 292493294 8918314 complement(3402954..3404465) 1 NC_013960.1 PFAM: glucose-methanol-choline oxidoreductase; KEGG: pol:Bpro_1884 FAD dependent oxidoreductase; glucose-methanol-choline oxidoreductase 3404465 8918314 Nhal_3303 Nitrosococcus halophilus Nc4 glucose-methanol-choline oxidoreductase YP_003528733.1 3402954 R 472759 CDS YP_003528734.1 292493295 8918315 complement(3404589..3405260) 1 NC_013960.1 PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: reu:Reut_A0587 UbiE/COQ5 methyltransferase; type 11 methyltransferase 3405260 8918315 Nhal_3304 Nitrosococcus halophilus Nc4 type 11 methyltransferase YP_003528734.1 3404589 R 472759 CDS YP_003528735.1 292493296 8918316 complement(3405457..3406188) 1 NC_013960.1 KEGG: nodulation protein-related; hypothetical protein 3406188 8918316 Nhal_3305 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528735.1 3405457 R 472759 CDS YP_003528736.1 292493297 8918317 complement(3406538..3408052) 1 NC_013960.1 PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: hch:HCH_06176 O-antigen and teichoic acid export protein; polysaccharide biosynthesis protein 3408052 8918317 Nhal_3306 Nitrosococcus halophilus Nc4 polysaccharide biosynthesis protein YP_003528736.1 3406538 R 472759 CDS YP_003528737.1 292493298 8918318 complement(3408077..3408745) 1 NC_013960.1 KEGG: pla:Plav_3095 hexapaptide repeat-containing transferase; acetyltransferase (isoleucine patch superfamily)-like protein 3408745 8918318 Nhal_3307 Nitrosococcus halophilus Nc4 acetyltransferase (isoleucine patch superfamily)-like protein YP_003528737.1 3408077 R 472759 CDS YP_003528738.1 292493299 8918319 complement(3408969..3409511) 1 NC_013960.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: hch:HCH_06173 hypothetical protein; membrane-bound metal-dependent hydrolase 3409511 8918319 Nhal_3308 Nitrosococcus halophilus Nc4 membrane-bound metal-dependent hydrolase YP_003528738.1 3408969 R 472759 CDS YP_003528739.1 292493300 8918320 complement(3409489..3410670) 1 NC_013960.1 PFAM: glycosyl transferase group 1; KEGG: bpe:BP3671 glycosyl transferase; group 1 glycosyl transferase 3410670 8918320 Nhal_3309 Nitrosococcus halophilus Nc4 group 1 glycosyl transferase YP_003528739.1 3409489 R 472759 CDS YP_003528740.1 292493301 8918321 complement(3410719..3411708) 1 NC_013960.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: ade:Adeh_1168 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 3411708 8918321 Nhal_3310 Nitrosococcus halophilus Nc4 NAD-dependent epimerase/dehydratase YP_003528740.1 3410719 R 472759 CDS YP_003528741.1 292493302 8918322 complement(3411756..3413474) 1 NC_013960.1 PFAM: FAD dependent oxidoreductase; monooxygenase FAD-binding; KEGG: pla:Plav_1671 FAD dependent oxidoreductase; FAD dependent oxidoreductase 3413474 8918322 Nhal_3311 Nitrosococcus halophilus Nc4 FAD dependent oxidoreductase YP_003528741.1 3411756 R 472759 CDS YP_003528742.1 292493303 8918323 complement(3413546..3414334) 1 NC_013960.1 KEGG: sit:TM1040_3846 methyltransferase type 11; hypothetical protein 3414334 8918323 Nhal_3312 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528742.1 3413546 R 472759 CDS YP_003528743.1 292493304 8918324 complement(3415363..3416223) 1 NC_013960.1 PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_1076 glycosyl transferase family 2; family 2 glycosyl transferase 3416223 8918324 Nhal_3313 Nitrosococcus halophilus Nc4 family 2 glycosyl transferase YP_003528743.1 3415363 R 472759 CDS YP_003528744.1 292493305 8918325 complement(3416581..3417465) 1 NC_013960.1 PFAM: glycosyl transferase family 2; KEGG: dol:Dole_1298 glycosyl transferase; family 2 glycosyl transferase 3417465 8918325 Nhal_3314 Nitrosococcus halophilus Nc4 family 2 glycosyl transferase YP_003528744.1 3416581 R 472759 CDS YP_003528745.1 292493306 8918326 complement(3417537..3418289) 1 NC_013960.1 KEGG: mca:MCA1437 sugar transferase/glycosyl transferase, WecB/TagA/CpsF family protein; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; WecB/TagA/CpsF family glycosyl transferase 3418289 8918326 Nhal_3315 Nitrosococcus halophilus Nc4 WecB/TagA/CpsF family glycosyl transferase YP_003528745.1 3417537 R 472759 CDS YP_003528746.1 292493307 8918327 complement(3418322..3419230) 1 NC_013960.1 PFAM: glycosyl transferase family 2; KEGG: mrd:Mrad2831_5475 glycosyl transferase; family 2 glycosyl transferase 3419230 8918327 Nhal_3316 Nitrosococcus halophilus Nc4 family 2 glycosyl transferase YP_003528746.1 3418322 R 472759 CDS YP_003528747.1 292493308 8918328 complement(3419328..3419972) 1 NC_013960.1 KEGG: met:M446_4974 methyltransferase type 11; hypothetical protein 3419972 8918328 Nhal_3317 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528747.1 3419328 R 472759 CDS YP_003528748.1 292493309 8918329 3420213..3421208 1 NC_013960.1 PFAM: sulfotransferase; KEGG: afr:AFE_1817 sulfotransferase domain protein; sulfotransferase 3421208 8918329 Nhal_3318 Nitrosococcus halophilus Nc4 sulfotransferase YP_003528748.1 3420213 D 472759 CDS YP_003528749.1 292493310 8918330 complement(3421285..3422100) 1 NC_013960.1 PFAM: sulfotransferase; KEGG: hch:HCH_02730 hypothetical protein; sulfotransferase 3422100 8918330 Nhal_3319 Nitrosococcus halophilus Nc4 sulfotransferase YP_003528749.1 3421285 R 472759 CDS YP_003528750.1 292493311 8918331 complement(3422101..3423381) 1 NC_013960.1 KEGG: gur:Gura_2594 hypothetical protein; hypothetical protein 3423381 8918331 Nhal_3320 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528750.1 3422101 R 472759 CDS YP_003528751.1 292493312 8918333 complement(3423825..3424325) 1 NC_013960.1 KEGG: cak:Caul_5241 transposase; transposase 3424325 8918333 Nhal_3322 Nitrosococcus halophilus Nc4 transposase YP_003528751.1 3423825 R 472759 CDS YP_003528752.1 292493313 8918334 complement(3424369..3424791) 1 NC_013960.1 KEGG: mno:Mnod_8191 transposase and inactivated derivatives-like protein; transposase 3424791 8918334 Nhal_3323 Nitrosococcus halophilus Nc4 transposase YP_003528752.1 3424369 R 472759 CDS YP_003528753.1 292493314 8918336 complement(3425554..3427149) 1 NC_013960.1 PFAM: polysaccharide biosynthesis protein; multi antimicrobial extrusion protein MatE; KEGG: dol:Dole_1836 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 3427149 8918336 Nhal_3325 Nitrosococcus halophilus Nc4 polysaccharide biosynthesis protein YP_003528753.1 3425554 R 472759 CDS YP_003528754.1 292493315 8918337 complement(3427146..3428051) 1 NC_013960.1 PFAM: sulfotransferase; KEGG: dat:HRM2_25330 3-beta-hydroxysteroid sulfotransferase (phenol sulfotransferase); sulfotransferase 3428051 8918337 Nhal_3326 Nitrosococcus halophilus Nc4 sulfotransferase YP_003528754.1 3427146 R 472759 CDS YP_003528755.1 292493316 8918339 complement(3428955..3429893) 1 NC_013960.1 PFAM: glycosyl transferase family 2; KEGG: ppd:Ppro_2585 glycosyl transferase; family 2 glycosyl transferase 3429893 8918339 Nhal_3328 Nitrosococcus halophilus Nc4 family 2 glycosyl transferase YP_003528755.1 3428955 R 472759 CDS YP_003528756.1 292493317 8918340 complement(3429893..3430852) 1 NC_013960.1 PFAM: glycosyl transferase family 2; KEGG: glo:Glov_2754 glycosyl transferase family 2; family 2 glycosyl transferase 3430852 8918340 Nhal_3329 Nitrosococcus halophilus Nc4 family 2 glycosyl transferase YP_003528756.1 3429893 R 472759 CDS YP_003528757.1 292493318 8918341 complement(3430953..3432386) 1 NC_013960.1 KEGG: bav:BAV2927 4-amino-4-deoxy-L-arabinose lipid A transferase; hypothetical protein 3432386 8918341 Nhal_3330 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528757.1 3430953 R 472759 CDS YP_003528758.1 292493319 8918343 complement(3433666..3434766) 1 NC_013960.1 KEGG: sfu:Sfum_0087 hypothetical protein; hypothetical protein 3434766 8918343 Nhal_3332 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528758.1 3433666 R 472759 CDS YP_003528759.1 292493320 8918344 complement(3435229..3436035) 1 NC_013960.1 KEGG: sat:SYN_00779 tyrosine-protein kinase; tyrosine-protein kinase 3436035 8918344 Nhal_3333 Nitrosococcus halophilus Nc4 tyrosine-protein kinase YP_003528759.1 3435229 R 472759 CDS YP_003528760.1 292493321 8918345 complement(3436072..3437745) 1 NC_013960.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: gme:Gmet_1446 lipopolysaccharide biosynthesis; lipopolysaccharide biosynthesis protein 3437745 8918345 Nhal_3334 Nitrosococcus halophilus Nc4 lipopolysaccharide biosynthesis protein YP_003528760.1 3436072 R 472759 CDS YP_003528761.1 292493322 8918347 complement(3437985..3439202) 1 NC_013960.1 KEGG: sat:SYN_00781 hypothetical protein; hypothetical protein 3439202 8918347 Nhal_3336 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528761.1 3437985 R 472759 CDS YP_003528762.1 292493323 8918348 complement(3439235..3439852) 1 NC_013960.1 PFAM: polysaccharide export protein; KEGG: gur:Gura_2582 polysaccharide export protein; polysaccharide export protein 3439852 8918348 Nhal_3337 Nitrosococcus halophilus Nc4 polysaccharide export protein YP_003528762.1 3439235 R 472759 CDS YP_003528763.1 292493324 8918349 complement(join(3440182..3440622,3440621..3440899)) 1 NC_013960.1 KEGG: ngk:NGK_0512 hypothetical protein; hypothetical protein 3440899 8918349 Nhal_3338 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528763.1 3440182 R 472759 CDS YP_003528764.1 292493325 8918351 complement(3441917..3442546) 1 NC_013960.1 KEGG: noc:Noc_0134 hypothetical protein; hypothetical protein 3442546 8918351 Nhal_3340 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528764.1 3441917 R 472759 CDS YP_003528765.1 292493326 8918352 complement(3442539..3443084) 1 NC_013960.1 PFAM: protein of unknown function ATP binding; KEGG: noc:Noc_0133 ATP binding protein; hypothetical protein 3443084 8918352 Nhal_3341 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528765.1 3442539 R 472759 CDS YP_003528766.1 292493327 8918353 complement(3443124..3444323) 1 NC_013960.1 KEGG: noc:Noc_0132 hypothetical protein; hypothetical protein 3444323 8918353 Nhal_3342 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528766.1 3443124 R 472759 CDS YP_003528767.1 292493328 8918354 complement(3444344..3445081) 1 NC_013960.1 KEGG: lch:Lcho_0654 hypothetical protein; hypothetical protein 3445081 8918354 Nhal_3343 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528767.1 3444344 R 472759 CDS YP_003528768.1 292493329 8918355 3445586..3445981 1 NC_013960.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: noc:Noc_0131 response regulator receiver; response regulator receiver 3445981 8918355 Nhal_3344 Nitrosococcus halophilus Nc4 response regulator receiver YP_003528768.1 3445586 D 472759 CDS YP_003528769.1 292493330 8918356 3446068..3446433 1 NC_013960.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: noc:Noc_0130 response regulator receiver; response regulator receiver 3446433 8918356 Nhal_3345 Nitrosococcus halophilus Nc4 response regulator receiver YP_003528769.1 3446068 D 472759 CDS YP_003528770.1 292493331 8918357 3446446..3446994 1 NC_013960.1 PFAM: chemotaxis protein CheW; SMART: chemotaxis protein CheW; KEGG: noc:Noc_0129 CheW-like protein; chemotaxis protein CheW 3446994 8918357 Nhal_3346 Nitrosococcus halophilus Nc4 chemotaxis protein CheW YP_003528770.1 3446446 D 472759 CDS YP_003528771.1 292493332 8918358 3447078..3448691 1 NC_013960.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: noc:Noc_0128 chemotaxis sensory transducer; chemotaxis sensory transducer 3448691 8918358 Nhal_3347 Nitrosococcus halophilus Nc4 chemotaxis sensory transducer YP_003528771.1 3447078 D 472759 CDS YP_003528772.1 292493333 8918359 3448711..3449565 1 NC_013960.1 KEGG: noc:Noc_0127 MCP methyltransferase, CheR-type; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type; protein-glutamate O-methyltransferase 3449565 8918359 Nhal_3348 Nitrosococcus halophilus Nc4 protein-glutamate O-methyltransferase YP_003528772.1 3448711 D 472759 CDS YP_003528773.1 292493334 8918360 3449584..3454872 1 NC_013960.1 PFAM: response regulator receiver; chemotaxis protein CheW; Hpt domain protein; ATP-binding region ATPase domain protein; SMART: response regulator receiver; Hpt domain protein; ATP-binding region ATPase domain protein; chemotaxis protein CheW; KEGG: noc:Noc_0126 CheA signal transduction histidine kinase; response regulator receiver 3454872 8918360 Nhal_3349 Nitrosococcus halophilus Nc4 response regulator receiver YP_003528773.1 3449584 D 472759 CDS YP_003528774.1 292493335 8918361 3454859..3455887 1 NC_013960.1 PFAM: CheB methylesterase; KEGG: noc:Noc_0125 CheB methylesterase; protein-glutamate methylesterase 3455887 8918361 Nhal_3350 Nitrosococcus halophilus Nc4 protein-glutamate methylesterase YP_003528774.1 3454859 D 472759 CDS YP_003528775.1 292493336 8918362 3455915..3456448 1 NC_013960.1 PFAM: chemotaxis protein CheW; SMART: chemotaxis protein CheW; KEGG: noc:Noc_0124 CheW-like protein; chemotaxis protein CheW 3456448 8918362 Nhal_3351 Nitrosococcus halophilus Nc4 chemotaxis protein CheW YP_003528775.1 3455915 D 472759 CDS YP_003528776.1 292493337 8918363 complement(3456470..3457201) 1 NC_013960.1 PFAM: protein of unknown function DUF558; KEGG: noc:Noc_0123 hypothetical protein; hypothetical protein 3457201 8918363 Nhal_3352 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528776.1 3456470 R 472759 CDS YP_003528777.1 292493338 8918364 complement(3457390..3458739) 1 NC_013960.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: noc:Noc_0122 adenosylmethionine--8-amino-7-oxononanoate transaminase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 3458739 8918364 Nhal_3353 Nitrosococcus halophilus Nc4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_003528777.1 3457390 R 472759 CDS YP_003528778.1 292493339 8918365 3458920..3460071 1 NC_013960.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: dar:Daro_3461 secretion protein HlyD; RND family efflux transporter MFP subunit 3460071 8918365 Nhal_3354 Nitrosococcus halophilus Nc4 RND family efflux transporter MFP subunit YP_003528778.1 3458920 D 472759 CDS YP_003528779.1 292493340 8918366 3460068..3460742 1 NC_013960.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: net:Neut_1342 ABC transporter-related protein; ABC transporter 3460742 8918366 Nhal_3355 Nitrosococcus halophilus Nc4 ABC transporter YP_003528779.1 3460068 D 472759 CDS YP_003528780.1 292493341 8918367 3460739..3461944 1 NC_013960.1 PFAM: protein of unknown function DUF214; KEGG: azo:azo0833 ABC transporter permease; hypothetical protein 3461944 8918367 Nhal_3356 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528780.1 3460739 D 472759 CDS YP_003528781.1 292493342 8918368 3461949..3463145 1 NC_013960.1 PFAM: protein of unknown function DUF214; KEGG: pin:Ping_3708 ABC transporter permease; hypothetical protein 3463145 8918368 Nhal_3357 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528781.1 3461949 D 472759 CDS YP_003528782.1 292493343 8918371 complement(3463889..3464278) 1 NC_013960.1 KEGG: noc:Noc_1918 transcription elongation factor; transcription elongation factor 3464278 8918371 Nhal_3360 Nitrosococcus halophilus Nc4 transcription elongation factor YP_003528782.1 3463889 R 472759 CDS YP_003528783.1 292493344 8918372 3464662..3465360 1 NC_013960.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: noc:Noc_2690 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3465360 8918372 Nhal_3361 Nitrosococcus halophilus Nc4 short-chain dehydrogenase/reductase SDR YP_003528783.1 3464662 D 472759 CDS YP_003528784.1 292493345 8918373 complement(3465439..3465921) 1 NC_013960.1 PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; KEGG: tgr:Tgr7_2828 hypothetical protein; protein-tyrosine phosphatase, low molecular weight 3465921 8918373 Nhal_3362 Nitrosococcus halophilus Nc4 protein-tyrosine phosphatase, low molecular weight YP_003528784.1 3465439 R 472759 CDS YP_003528785.1 292493346 8918374 complement(3465921..3466373) 1 NC_013960.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cti:RALTA_B1893 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3466373 8918374 Nhal_3363 Nitrosococcus halophilus Nc4 glyoxalase/bleomycin resistance protein/dioxygenase YP_003528785.1 3465921 R 472759 CDS YP_003528786.1 292493347 8918375 complement(3466370..3466732) 1 NC_013960.1 SMART: ArsR family transcriptional regulator; KEGG: net:Neut_2264 ArsR family transcriptional regulator protein; ArsR family transcriptional regulator 3466732 8918375 Nhal_3364 Nitrosococcus halophilus Nc4 ArsR family transcriptional regulator YP_003528786.1 3466370 R 472759 CDS YP_003528787.1 292493348 8918376 complement(3467084..3467326) 1 NC_013960.1 KEGG: rpc:RPC_2216 plasmid stabilization system protein; hypothetical protein 3467326 8918376 Nhal_3365 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528787.1 3467084 R 472759 CDS YP_003528788.1 292493349 8918377 3467579..3467887 1 NC_013960.1 hypothetical protein 3467887 8918377 Nhal_3366 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528788.1 3467579 D 472759 CDS YP_003528789.1 292493350 8918378 3468040..3468261 1 NC_013960.1 KEGG: cak:Caul_2323 hypothetical protein; hypothetical protein 3468261 8918378 Nhal_3367 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528789.1 3468040 D 472759 CDS YP_003528790.1 292493351 8918379 3468382..3468657 1 NC_013960.1 TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: mpo:Mpop_0594 addiction module antidote protein, CopG/Arc/MetJ family; addiction module antidote protein 3468657 8918379 Nhal_3368 Nitrosococcus halophilus Nc4 addiction module antidote protein YP_003528790.1 3468382 D 472759 CDS YP_003528791.1 292493352 8918380 3468738..3468953 1 NC_013960.1 PFAM: plasmid stabilization system; KEGG: neu:NE0261 plasmid stabilization element ParE; plasmid stabilization system 3468953 8918380 Nhal_3369 Nitrosococcus halophilus Nc4 plasmid stabilization system YP_003528791.1 3468738 D 472759 CDS YP_003528792.1 292493353 8918383 3470309..3471229 1 NC_013960.1 KEGG: noc:Noc_A0025 hypothetical protein; hypothetical protein 3471229 8918383 Nhal_3372 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528792.1 3470309 D 472759 CDS YP_003528793.1 292493354 8918384 3471230..3472090 1 NC_013960.1 PFAM: Domain of unknown function DUF1814; KEGG: noc:Noc_A0026 hypothetical protein; hypothetical protein 3472090 8918384 Nhal_3373 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528793.1 3471230 D 472759 CDS YP_003528794.1 292493355 8918385 3472220..3472471 1 NC_013960.1 PFAM: WGR domain protein; SMART: WGR domain protein; KEGG: noc:Noc_A0027 WGR; WGR domain-containing protein 3472471 8918385 Nhal_3374 Nitrosococcus halophilus Nc4 WGR domain-containing protein YP_003528794.1 3472220 D 472759 CDS YP_003528795.1 292493356 8918386 complement(3472468..3474510) 1 NC_013960.1 PFAM: protein of unknown function DUF87; KEGG: rsh:Rsph17029_3200 ATPase-like protein; hypothetical protein 3474510 8918386 Nhal_3375 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528795.1 3472468 R 472759 CDS YP_003528796.1 292493357 8918387 complement(3474500..3475819) 1 NC_013960.1 KEGG: rsh:Rsph17029_3199 hypothetical protein; hypothetical protein 3475819 8918387 Nhal_3376 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528796.1 3474500 R 472759 CDS YP_003528797.1 292493358 8918388 complement(3475828..3477780) 1 NC_013960.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: nha:Nham_0582 DNA methylase N-4/N-6; adenine-specific DNA-methyltransferase 3477780 8918388 Nhal_3377 Nitrosococcus halophilus Nc4 adenine-specific DNA-methyltransferase YP_003528797.1 3475828 R 472759 CDS YP_003528798.1 292493359 8918389 complement(3477796..3480471) 1 NC_013960.1 PFAM: type III restriction protein res subunit; KEGG: hdu:HD1690 type III restriction enzyme; type III site-specific deoxyribonuclease 3480471 8918389 Nhal_3378 Nitrosococcus halophilus Nc4 type III site-specific deoxyribonuclease YP_003528798.1 3477796 R 472759 CDS YP_003528799.1 292493360 8918391 complement(3481621..3481908) 1 NC_013960.1 hypothetical protein 3481908 8918391 Nhal_3380 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528799.1 3481621 R 472759 CDS YP_003528800.1 292493361 8918392 complement(3482140..3482445) 1 NC_013960.1 TIGRFAM: AbrB family transcriptional regulator; PFAM: SpoVT/AbrB domain protein; KEGG: amc:MADE_03478 hypothetical protein; AbrB family transcriptional regulator 3482445 8918392 Nhal_3381 Nitrosococcus halophilus Nc4 AbrB family transcriptional regulator YP_003528800.1 3482140 R 472759 CDS YP_003528801.1 292493362 8918393 complement(3482448..3482843) 1 NC_013960.1 TIGRFAM: death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic; KEGG: lch:Lcho_1579 death-on-curing family protein; death-on-curing family protein 3482843 8918393 Nhal_3382 Nitrosococcus halophilus Nc4 death-on-curing family protein YP_003528801.1 3482448 R 472759 CDS YP_003528802.1 292493363 8918394 complement(3482854..3483078) 1 NC_013960.1 TIGRFAM: addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: xau:Xaut_0218 addiction module antidote; addiction module antidote 3483078 8918394 Nhal_3383 Nitrosococcus halophilus Nc4 addiction module antidote YP_003528802.1 3482854 R 472759 CDS YP_003528803.1 292493364 8918395 3483275..3484030 1 NC_013960.1 PFAM: protein of unknown function DUF152; KEGG: noc:Noc_0579 hypothetical protein; hypothetical protein 3484030 8918395 Nhal_3384 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528803.1 3483275 D 472759 CDS YP_003528804.1 292493365 8918396 3484071..3484979 1 NC_013960.1 PFAM: glycosyl transferase family 9; KEGG: noc:Noc_0578 glycosyl transferase; glycosyl transferase family protein 3484979 8918396 Nhal_3385 Nitrosococcus halophilus Nc4 glycosyl transferase family protein YP_003528804.1 3484071 D 472759 CDS YP_003528805.1 292493366 8918397 3484976..3486043 1 NC_013960.1 PFAM: glycosyl transferase group 1; KEGG: noc:Noc_0577 glycosyl transferase, group 1; group 1 glycosyl transferase 3486043 8918397 Nhal_3386 Nitrosococcus halophilus Nc4 group 1 glycosyl transferase YP_003528805.1 3484976 D 472759 CDS YP_003528806.1 292493367 8918398 complement(3486082..3487077) 1 NC_013960.1 PFAM: glycosyl transferase family 9; KEGG: noc:Noc_0576 glycosyl transferase; glycosyl transferase family protein 3487077 8918398 Nhal_3387 Nitrosococcus halophilus Nc4 glycosyl transferase family protein YP_003528806.1 3486082 R 472759 CDS YP_003528807.1 292493368 8918399 complement(3487155..3488363) 1 NC_013960.1 PFAM: O-antigen polymerase; KEGG: noc:Noc_0562 O-antigen polymerase; O-antigen polymerase 3488363 8918399 Nhal_3388 Nitrosococcus halophilus Nc4 O-antigen polymerase YP_003528807.1 3487155 R 472759 CDS YP_003528808.1 292493369 8918400 complement(3488347..3489357) 1 NC_013960.1 PFAM: glycosyl transferase family 9; KEGG: noc:Noc_0561 glycosyl transferase; glycosyl transferase family protein 3489357 8918400 Nhal_3389 Nitrosococcus halophilus Nc4 glycosyl transferase family protein YP_003528808.1 3488347 R 472759 CDS YP_003528809.1 292493370 8918401 complement(3489383..3490507) 1 NC_013960.1 PFAM: glycosyl transferase group 1; KEGG: noc:Noc_0560 glycosyl transferase, group 1; group 1 glycosyl transferase 3490507 8918401 Nhal_3390 Nitrosococcus halophilus Nc4 group 1 glycosyl transferase YP_003528809.1 3489383 R 472759 CDS YP_003528810.1 292493371 8918402 complement(3490489..3491430) 1 NC_013960.1 PFAM: protein of unknown function DUF1022; KEGG: noc:Noc_0559 hypothetical protein; hypothetical protein 3491430 8918402 Nhal_3391 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528810.1 3490489 R 472759 CDS YP_003528811.1 292493372 8918403 complement(3491448..3492284) 1 NC_013960.1 TIGRFAM: spermidine synthase; PFAM: Spermine synthase; KEGG: noc:Noc_0558 spermidine synthase; spermidine synthase 3492284 8918403 Nhal_3392 Nitrosococcus halophilus Nc4 spermidine synthase YP_003528811.1 3491448 R 472759 CDS YP_003528812.1 292493373 8918404 complement(3492310..3492417) 1 NC_013960.1 hypothetical protein 3492417 8918404 Nhal_3393 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528812.1 3492310 R 472759 CDS YP_003528813.1 292493374 8918405 3492676..3494565 1 NC_013960.1 TIGRFAM: arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: noc:Noc_0557 arginine decarboxylase; arginine decarboxylase 3494565 8918405 Nhal_3394 Nitrosococcus halophilus Nc4 arginine decarboxylase YP_003528813.1 3492676 D 472759 CDS YP_003528814.1 292493375 8918406 complement(3494747..3495100) 1 NC_013960.1 KEGG: noc:Noc_0556 hypothetical protein; hypothetical protein 3495100 8918406 Nhal_3395 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528814.1 3494747 R 472759 CDS YP_003528815.1 292493376 8918407 complement(3495123..3495848) 1 NC_013960.1 PFAM: conserved hypothetical protein; KEGG: noc:Noc_0555 hypothetical protein; hypothetical protein 3495848 8918407 Nhal_3396 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528815.1 3495123 R 472759 CDS YP_003528816.1 292493377 8918408 3495913..3498618 1 NC_013960.1 KEGG: noc:Noc_0554 DNA polymerase A; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: 5'-3' exonuclease; DNA-directed DNA polymerase; 3'-5' exonuclease; Helix-hairpin-helix domain protein class 2; DNA polymerase I 3498618 8918408 Nhal_3397 Nitrosococcus halophilus Nc4 DNA polymerase I YP_003528816.1 3495913 D 472759 CDS YP_003528817.1 292493378 8918409 complement(3498678..3498821) 1 NC_013960.1 hypothetical protein 3498821 8918409 Nhal_3398 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528817.1 3498678 R 472759 CDS YP_003528818.1 292493379 8918410 complement(3498805..3499422) 1 NC_013960.1 PFAM: GTP-binding protein HSR1-related; KEGG: noc:Noc_0553 GTP-binding protein; GTP-binding protein HSR1-like protein 3499422 8918410 Nhal_3399 Nitrosococcus halophilus Nc4 GTP-binding protein HSR1-like protein YP_003528818.1 3498805 R 472759 CDS YP_003528819.1 292493380 8918411 3499590..3500213 1 NC_013960.1 PFAM: cytochrome C class I; KEGG: noc:Noc_0552 cytochrome c, class I; cytochrome C class I 3500213 8918411 Nhal_3400 Nitrosococcus halophilus Nc4 cytochrome C class I YP_003528819.1 3499590 D 472759 CDS YP_003528820.1 292493381 8918412 3500249..3500905 1 NC_013960.1 PFAM: DSBA oxidoreductase; KEGG: noc:Noc_0551 DsbA oxidoreductase; DSBA oxidoreductase 3500905 8918412 Nhal_3401 Nitrosococcus halophilus Nc4 DSBA oxidoreductase YP_003528820.1 3500249 D 472759 CDS YP_003528821.1 292493382 8918415 3504317..3505612 1 NC_013960.1 PFAM: restriction modification system DNA specificity domain; KEGG: gur:Gura_4042 restriction modification system DNA specificity subunit; restriction modification system DNA specificity domain-containing protein 3505612 8918415 Nhal_3403 Nitrosococcus halophilus Nc4 restriction modification system DNA specificity domain-containing protein YP_003528821.1 3504317 D 472759 CDS YP_003528822.1 292493383 8918416 3505605..3506381 1 NC_013960.1 KEGG: mpt:Mpe_A3611 hypothetical protein; hypothetical protein 3506381 8918416 Nhal_3404 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528822.1 3505605 D 472759 CDS YP_003528823.1 292493384 8918417 3506459..3507112 1 NC_013960.1 KEGG: pmy:Pmen_0565 hypothetical protein; hypothetical protein 3507112 8918417 Nhal_3405 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528823.1 3506459 D 472759 CDS YP_003528824.1 292493385 8918418 3507112..3508173 1 NC_013960.1 PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; KEGG: vei:Veis_0910 appr-1-p processing domain-containing protein; Appr-1-p processing domain-containing protein 3508173 8918418 Nhal_3406 Nitrosococcus halophilus Nc4 Appr-1-p processing domain-containing protein YP_003528824.1 3507112 D 472759 CDS YP_003528825.1 292493386 8918420 3511534..3512220 1 NC_013960.1 PFAM: protein of unknown function DUF45; KEGG: gur:Gura_4036 hypothetical protein; hypothetical protein 3512220 8918420 Nhal_3409 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528825.1 3511534 D 472759 CDS YP_003528826.1 292493387 8918421 3512559..3513695 1 NC_013960.1 KEGG: dat:HRM2_16320 mechanosensitive small-conductance channel MscC; mechanosensitive small-conductance channel MscC 3513695 8918421 Nhal_3410 Nitrosococcus halophilus Nc4 mechanosensitive small-conductance channel MscC YP_003528826.1 3512559 D 472759 CDS YP_003528827.1 292493388 8918422 3513699..3514412 1 NC_013960.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bur:Bcep18194_B3095 3-oxoacyl-[acyl-carrier-protein] reductase; short-chain dehydrogenase/reductase SDR 3514412 8918422 Nhal_3411 Nitrosococcus halophilus Nc4 short-chain dehydrogenase/reductase SDR YP_003528827.1 3513699 D 472759 CDS YP_003528828.1 292493389 8918423 complement(3514545..3514652) 1 NC_013960.1 hypothetical protein 3514652 8918423 Nhal_3412 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528828.1 3514545 R 472759 CDS YP_003528829.1 292493390 8918424 3514748..3515563 1 NC_013960.1 PFAM: conserved hypothetical protein; KEGG: noc:Noc_2839 hypothetical protein; hypothetical protein 3515563 8918424 Nhal_3413 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528829.1 3514748 D 472759 CDS YP_003528830.1 292493391 8918425 3515566..3516339 1 NC_013960.1 TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; KEGG: noc:Noc_2840 3-deoxy-D-manno-octulosonate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase 3516339 8918425 Nhal_3414 Nitrosococcus halophilus Nc4 3-deoxy-D-manno-octulosonate cytidylyltransferase YP_003528830.1 3515566 D 472759 CDS YP_003528831.1 292493392 8918426 complement(3516367..3516642) 1 NC_013960.1 KEGG: noc:Noc_2841 hypothetical protein; hypothetical protein 3516642 8918426 Nhal_3415 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528831.1 3516367 R 472759 CDS YP_003528832.1 292493393 8918427 3516669..3517205 1 NC_013960.1 PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; KEGG: noc:Noc_2842 low molecular weight phosphotyrosine protein phosphatase; protein-tyrosine phosphatase, low molecular weight 3517205 8918427 Nhal_3416 Nitrosococcus halophilus Nc4 protein-tyrosine phosphatase, low molecular weight YP_003528832.1 3516669 D 472759 CDS YP_003528833.1 292493394 8918428 complement(3517202..3519559) 1 NC_013960.1 KEGG: noc:Noc_2843 ribonuclease E and G; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; Rne/Rng family ribonuclease 3519559 8918428 Nhal_3417 Nitrosococcus halophilus Nc4 Rne/Rng family ribonuclease YP_003528833.1 3517202 R 472759 CDS YP_003528834.1 292493395 8918429 complement(3520518..3521882) 1 NC_013960.1 PFAM: ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: tgr:Tgr7_2002 recombination factor protein RarA; ATPase AAA 3521882 8918429 Nhal_3418 Nitrosococcus halophilus Nc4 ATPase AAA YP_003528834.1 3520518 R 472759 CDS YP_003528835.1 292493396 8918430 complement(3521857..3522444) 1 NC_013960.1 TIGRFAM: outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: noc:Noc_0348 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 3522444 8918430 Nhal_3419 Nitrosococcus halophilus Nc4 outer membrane lipoprotein carrier protein LolA YP_003528835.1 3521857 R 472759 CDS YP_003528836.1 292493397 8918431 complement(3522523..3525219) 1 NC_013960.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: ATPase AAA; KEGG: noc:Noc_0347 cell division FtsK/SpoIIIE; cell division FtsK/SpoIIIE 3525219 8918431 Nhal_3420 Nitrosococcus halophilus Nc4 cell division FtsK/SpoIIIE YP_003528836.1 3522523 R 472759 CDS YP_003528837.1 292493398 8918432 complement(3525385..3526458) 1 NC_013960.1 KEGG: noc:Noc_0346 alanine dehydrogenase and pyridine nucleotide transhydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; alanine dehydrogenase 3526458 8918432 Nhal_3421 Nitrosococcus halophilus Nc4 alanine dehydrogenase YP_003528837.1 3525385 R 472759 CDS YP_003528838.1 292493399 8918433 3526706..3527671 1 NC_013960.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: noc:Noc_0345 thioredoxin reductase; thioredoxin reductase 3527671 8918433 Nhal_3422 Nitrosococcus halophilus Nc4 thioredoxin reductase YP_003528838.1 3526706 D 472759 CDS YP_003528839.1 292493400 8918434 3527718..3528551 1 NC_013960.1 KEGG: noc:Noc_0344 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; DNA adenine methylase 3528551 8918434 Nhal_3423 Nitrosococcus halophilus Nc4 DNA adenine methylase YP_003528839.1 3527718 D 472759 CDS YP_003528840.1 292493401 8918435 complement(3528560..3528829) 1 NC_013960.1 KEGG: tbd:Tbd_1840 hypothetical protein; hypothetical protein 3528829 8918435 Nhal_3424 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528840.1 3528560 R 472759 CDS YP_003528841.1 292493402 8918436 complement(3528855..3530108) 1 NC_013960.1 PFAM: peptidase M48 Ste24p; KEGG: noc:Noc_0342 STE24 endopeptidase; Ste24 endopeptidase 3530108 8918436 Nhal_3425 Nitrosococcus halophilus Nc4 Ste24 endopeptidase YP_003528841.1 3528855 R 472759 CDS YP_003528842.1 292493403 8918437 3530199..3530750 1 NC_013960.1 PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease; KEGG: noc:Noc_0341 oligoribonuclease; exonuclease RNase T and DNA polymerase III 3530750 8918437 Nhal_3426 Nitrosococcus halophilus Nc4 exonuclease RNase T and DNA polymerase III YP_003528842.1 3530199 D 472759 CDS YP_003528843.1 292493404 8918438 complement(3530754..3531875) 1 NC_013960.1 TIGRFAM: iron-sulfur cluster binding protein; PFAM: domain of unknown function DUF1730; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: noc:Noc_0340 4Fe-4S cluster binding protein; iron-sulfur cluster binding protein 3531875 8918438 Nhal_3427 Nitrosococcus halophilus Nc4 iron-sulfur cluster binding protein YP_003528843.1 3530754 R 472759 CDS YP_003528844.1 292493405 8918439 3532016..3533506 1 NC_013960.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: noc:Noc_0339 hypothetical protein; carbohydrate kinase 3533506 8918439 Nhal_3428 Nitrosococcus halophilus Nc4 carbohydrate kinase YP_003528844.1 3532016 D 472759 CDS YP_003528845.1 292493406 8918440 3533506..3533979 1 NC_013960.1 PFAM: protein of unknown function UPF0079; KEGG: noc:Noc_0338 hypothetical protein; hypothetical protein 3533979 8918440 Nhal_3429 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528845.1 3533506 D 472759 CDS YP_003528846.1 292493407 8918441 3534062..3535402 1 NC_013960.1 KEGG: noc:Noc_0337 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; peptidoglycan-binding LysM; SMART: cell wall hydrolase/autolysin; peptidoglycan-binding LysM; N-acetylmuramoyl-L-alanine amidase 3535402 8918441 Nhal_3430 Nitrosococcus halophilus Nc4 N-acetylmuramoyl-L-alanine amidase YP_003528846.1 3534062 D 472759 CDS YP_003528847.1 292493408 8918442 3535729..3537543 1 NC_013960.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; KEGG: noc:Noc_0336 DNA mismatch repair protein; DNA mismatch repair protein MutL 3537543 8918442 Nhal_3431 Nitrosococcus halophilus Nc4 DNA mismatch repair protein MutL YP_003528847.1 3535729 D 472759 CDS YP_003528848.1 292493409 8918443 complement(3537591..3540311) 1 NC_013960.1 KEGG: noc:Noc_0335 PAS sensor diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; diguanylate cyclase 3540311 8918443 Nhal_3432 Nitrosococcus halophilus Nc4 diguanylate cyclase YP_003528848.1 3537591 R 472759 CDS YP_003528849.1 292493410 8918444 complement(3540298..3540498) 1 NC_013960.1 KEGG: noc:Noc_0335 PAS sensor diguanylate cyclase/phosphodiesterase; PAS sensor diguanylate cyclase/phosphodiesterase 3540498 8918444 Nhal_3433 Nitrosococcus halophilus Nc4 PAS sensor diguanylate cyclase/phosphodiesterase YP_003528849.1 3540298 R 472759 CDS YP_003528850.1 292493411 8918445 complement(3540820..3541722) 1 NC_013960.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: noc:Noc_0334 LysR family transcriptional regulator; LysR family transcriptional regulator 3541722 8918445 Nhal_3434 Nitrosococcus halophilus Nc4 LysR family transcriptional regulator YP_003528850.1 3540820 R 472759 CDS YP_003528851.1 292493412 8918446 3541963..3543384 1 NC_013960.1 PFAM: ribulose bisphosphate carboxylase large chain; ribulose bisphosphate carboxylase, large subunit-like; KEGG: tbd:Tbd_2624 ribulose bisophosphate carboxylase; ribulose-bisphosphate carboxylase 3543384 8918446 Nhal_3435 Nitrosococcus halophilus Nc4 ribulose-bisphosphate carboxylase YP_003528851.1 3541963 D 472759 CDS YP_003528852.1 292493413 8918447 3543534..3543893 1 NC_013960.1 PFAM: ribulose bisphosphate carboxylase small chain; KEGG: hha:Hhal_1045 ribulose-bisphosphate carboxylase; ribulose-bisphosphate carboxylase 3543893 8918447 Nhal_3436 Nitrosococcus halophilus Nc4 ribulose-bisphosphate carboxylase YP_003528852.1 3543534 D 472759 CDS YP_003528853.1 292493414 8918448 3543985..3544785 1 NC_013960.1 PFAM: CbbQ/NirQ/NorQ domain protein; ATPase associated with various cellular activities AAA_5; KEGG: mca:MCA2746 CbbQ protein; CbbQ/NirQ/NorQ domain-containing protein 3544785 8918448 Nhal_3437 Nitrosococcus halophilus Nc4 CbbQ/NirQ/NorQ domain-containing protein YP_003528853.1 3543985 D 472759 CDS YP_003528854.1 292493415 8918449 3544850..3547198 1 NC_013960.1 PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: mca:MCA2754 CbbO protein; von Willebrand factor A 3547198 8918449 Nhal_3438 Nitrosococcus halophilus Nc4 von Willebrand factor A YP_003528854.1 3544850 D 472759 CDS YP_003528855.1 292493416 8918452 complement(3548915..3549127) 1 NC_013960.1 hypothetical protein 3549127 8918452 Nhal_3441 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528855.1 3548915 R 472759 CDS YP_003528856.1 292493417 8918453 3549389..3550867 1 NC_013960.1 PFAM: ribulose bisphosphate carboxylase large chain; ribulose bisphosphate carboxylase, large subunit-like; KEGG: noc:Noc_0333 ribulose bisophosphate carboxylase; ribulose-bisphosphate carboxylase 3550867 8918453 Nhal_3442 Nitrosococcus halophilus Nc4 ribulose-bisphosphate carboxylase YP_003528856.1 3549389 D 472759 CDS YP_003528857.1 292493418 8918454 3550887..3551321 1 NC_013960.1 PFAM: ribulose bisphosphate carboxylase small chain; KEGG: noc:Noc_0332 ribulose-bisphosphate carboxylase; ribulose-bisphosphate carboxylase 3551321 8918454 Nhal_3443 Nitrosococcus halophilus Nc4 ribulose-bisphosphate carboxylase YP_003528857.1 3550887 D 472759 CDS YP_003528858.1 292493419 8918455 3551393..3552346 1 NC_013960.1 KEGG: noc:Noc_0331 ATPase AAA; TIGRFAM: CbbX protein; PFAM: ATPase AAA; SMART: ATPase AAA; CbbX protein 3552346 8918455 Nhal_3444 Nitrosococcus halophilus Nc4 CbbX protein YP_003528858.1 3551393 D 472759 CDS YP_003528859.1 292493420 8918456 3552370..3552732 1 NC_013960.1 KEGG: noc:Noc_0330 hypothetical protein; hypothetical protein 3552732 8918456 Nhal_3445 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528859.1 3552370 D 472759 CDS YP_003528860.1 292493421 8918457 complement(3552988..3554052) 1 NC_013960.1 KEGG: noc:Noc_2804 fructose-1,6-bisphosphate aldolase; TIGRFAM: fructose-bisphosphate aldolase, class II, Calvin cycle subtype; ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; fructose-bisphosphate aldolase, class II, Calvin cycle subtype 3554052 8918457 Nhal_3446 Nitrosococcus halophilus Nc4 fructose-bisphosphate aldolase, class II, Calvin cycle subtype YP_003528860.1 3552988 R 472759 CDS YP_003528861.1 292493422 8918458 complement(3554196..3555662) 1 NC_013960.1 KEGG: noc:Noc_2805 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: pyruvate kinase barrel; pyruvate kinase alpha/beta; pyruvate kinase 3555662 8918458 Nhal_3447 Nitrosococcus halophilus Nc4 pyruvate kinase YP_003528861.1 3554196 R 472759 CDS YP_003528862.1 292493423 8918459 complement(3555741..3556919) 1 NC_013960.1 PFAM: phosphoglycerate kinase; KEGG: noc:Noc_2806 phosphoglycerate kinase; phosphoglycerate kinase 3556919 8918459 Nhal_3448 Nitrosococcus halophilus Nc4 phosphoglycerate kinase YP_003528862.1 3555741 R 472759 CDS YP_003528863.1 292493424 8918460 complement(3557058..3558071) 1 NC_013960.1 KEGG: noc:Noc_2807 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 3558071 8918460 Nhal_3449 Nitrosococcus halophilus Nc4 glyceraldehyde-3-phosphate dehydrogenase YP_003528863.1 3557058 R 472759 CDS YP_003528864.1 292493425 8918461 complement(3558170..3560167) 1 NC_013960.1 TIGRFAM: transketolase; PFAM: transketolase central region; transketolase; KEGG: noc:Noc_2808 transketolase; transketolase 3560167 8918461 Nhal_3450 Nitrosococcus halophilus Nc4 transketolase YP_003528864.1 3558170 R 472759 CDS YP_003528865.1 292493426 8918462 complement(3560357..3561172) 1 NC_013960.1 KEGG: noc:Noc_2809 dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase; dihydrodipicolinate reductase 3561172 8918462 Nhal_3451 Nitrosococcus halophilus Nc4 dihydrodipicolinate reductase YP_003528865.1 3560357 R 472759 CDS YP_003528866.1 292493427 8918463 complement(3561298..3562443) 1 NC_013960.1 KEGG: noc:Noc_2810 heat shock protein DnaJ; TIGRFAM: chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; DnaJ central domain protein; SMART: heat shock protein DnaJ domain protein; chaperone protein DnaJ 3562443 8918463 Nhal_3452 Nitrosococcus halophilus Nc4 chaperone protein DnaJ YP_003528866.1 3561298 R 472759 CDS YP_003528867.1 292493428 8918464 complement(3562609..3564525) 1 NC_013960.1 TIGRFAM: chaperone protein DnaK; PFAM: heat shock protein 70; KEGG: noc:Noc_2811 heat shock protein HSP70; chaperone protein DnaK 3564525 8918464 Nhal_3453 Nitrosococcus halophilus Nc4 chaperone protein DnaK YP_003528867.1 3562609 R 472759 CDS YP_003528868.1 292493429 8918465 complement(3564634..3565266) 1 NC_013960.1 PFAM: GrpE protein; KEGG: noc:Noc_2812 GrpE protein; GrpE protein 3565266 8918465 Nhal_3454 Nitrosococcus halophilus Nc4 GrpE protein YP_003528868.1 3564634 R 472759 CDS YP_003528869.1 292493430 8918466 complement(3565345..3566394) 1 NC_013960.1 TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: negative regulator of class I heat shock protein; KEGG: noc:Noc_2813 negative regulator of class I heat shock protein; heat-inducible transcription repressor HrcA 3566394 8918466 Nhal_3455 Nitrosococcus halophilus Nc4 heat-inducible transcription repressor HrcA YP_003528869.1 3565345 R 472759 CDS YP_003528870.1 292493431 8918467 complement(3566459..3567187) 1 NC_013960.1 KEGG: noc:Noc_2814 DNA polymerase III epsilon subunit; TIGRFAM: DNA polymerase III subunit epsilon; PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease; DNA polymerase III subunit epsilon 3567187 8918467 Nhal_3456 Nitrosococcus halophilus Nc4 DNA polymerase III subunit epsilon YP_003528870.1 3566459 R 472759 CDS YP_003528871.1 292493432 8918468 complement(3567187..3567630) 1 NC_013960.1 PFAM: ribonuclease H; KEGG: noc:Noc_2815 ribonuclease H; ribonuclease H 3567630 8918468 Nhal_3457 Nitrosococcus halophilus Nc4 ribonuclease H YP_003528871.1 3567187 R 472759 CDS YP_003528872.1 292493433 8918469 complement(3567623..3568429) 1 NC_013960.1 KEGG: noc:Noc_2816 generic methyl-transferase; generic methyl-transferase 3568429 8918469 Nhal_3458 Nitrosococcus halophilus Nc4 generic methyl-transferase YP_003528872.1 3567623 R 472759 CDS YP_003528873.1 292493434 8918470 3568584..3569225 1 NC_013960.1 PFAM: TetR family transcriptional regulator; KEGG: noc:Noc_2820 TetR family transcriptional regulator; TetR family transcriptional regulator 3569225 8918470 Nhal_3459 Nitrosococcus halophilus Nc4 TetR family transcriptional regulator YP_003528873.1 3568584 D 472759 CDS YP_003528874.1 292493435 8918471 3569296..3570345 1 NC_013960.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: noc:Noc_2821 membrane-bound metal-dependent hydrolase; membrane-bound metal-dependent hydrolase 3570345 8918471 Nhal_3460 Nitrosococcus halophilus Nc4 membrane-bound metal-dependent hydrolase YP_003528874.1 3569296 D 472759 CDS YP_003528875.1 292493436 8918472 complement(3570342..3571337) 1 NC_013960.1 TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: noc:Noc_2822 dihydroorotate dehydrogenase 1; dihydroorotate dehydrogenase 3571337 8918472 Nhal_3461 Nitrosococcus halophilus Nc4 dihydroorotate dehydrogenase YP_003528875.1 3570342 R 472759 CDS YP_003528876.1 292493437 8918473 3571354..3571869 1 NC_013960.1 TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: noc:Noc_2823 RNA methyltransferase TrmH, group 2; TrmH family RNA methyltransferase 3571869 8918473 Nhal_3462 Nitrosococcus halophilus Nc4 TrmH family RNA methyltransferase YP_003528876.1 3571354 D 472759 CDS YP_003528877.1 292493438 8918474 complement(3571901..3572839) 1 NC_013960.1 PFAM: coproporphyrinogen III oxidase; KEGG: noc:Noc_2824 coproporphyrinogen III oxidase; coproporphyrinogen oxidase 3572839 8918474 Nhal_3463 Nitrosococcus halophilus Nc4 coproporphyrinogen oxidase YP_003528877.1 3571901 R 472759 CDS YP_003528878.1 292493439 8918475 complement(3573101..3573661) 1 NC_013960.1 PFAM: SUA5/yciO/yrdC domain; KEGG: noc:Noc_2825 translation factor, SUA5/YciO/YrdC-like; SUA5/yciO/yrdC domain-containing protein 3573661 8918475 Nhal_3464 Nitrosococcus halophilus Nc4 SUA5/yciO/yrdC domain-containing protein YP_003528878.1 3573101 R 472759 CDS YP_003528879.1 292493440 8918476 complement(3573668..3574540) 1 NC_013960.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: noc:Noc_2826 phosphoribulokinase; phosphoribulokinase 3574540 8918476 Nhal_3465 Nitrosococcus halophilus Nc4 phosphoribulokinase YP_003528879.1 3573668 R 472759 CDS YP_003528880.1 292493441 8918477 complement(3574627..3575955) 1 NC_013960.1 KEGG: noc:Noc_2827 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; phosphoribosylamine/glycine ligase 3575955 8918477 Nhal_3466 Nitrosococcus halophilus Nc4 phosphoribosylamine/glycine ligase YP_003528880.1 3574627 R 472759 CDS YP_003528881.1 292493442 8918478 3576280..3578157 1 NC_013960.1 TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC; KEGG: noc:Noc_2828 thiamine biosynthesis protein ThiC; thiamine biosynthesis protein ThiC 3578157 8918478 Nhal_3467 Nitrosococcus halophilus Nc4 thiamine biosynthesis protein ThiC YP_003528881.1 3576280 D 472759 CDS YP_003528882.1 292493443 8918479 complement(3578297..3578692) 1 NC_013960.1 KEGG: noc:Noc_2830 hypothetical protein; hypothetical protein 3578692 8918479 Nhal_3468 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528882.1 3578297 R 472759 CDS YP_003528883.1 292493444 8918480 complement(3578701..3579396) 1 NC_013960.1 TIGRFAM: DNA mismatch repair endonuclease mutH; PFAM: DNA mismatch repair protein MutH; KEGG: noc:Noc_2831 DNA mismatch repair protein; DNA mismatch repair endonuclease mutH 3579396 8918480 Nhal_3469 Nitrosococcus halophilus Nc4 DNA mismatch repair endonuclease mutH YP_003528883.1 3578701 R 472759 CDS YP_003528884.1 292493445 8918481 3579494..3580420 1 NC_013960.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_2832 ABC transporter ATPase; ABC transporter 3580420 8918481 Nhal_3470 Nitrosococcus halophilus Nc4 ABC transporter YP_003528884.1 3579494 D 472759 CDS YP_003528885.1 292493446 8918482 3580417..3581193 1 NC_013960.1 PFAM: ABC transporter; KEGG: noc:Noc_2833 ABC transporter inner membrane subunit; ABC transporter 3581193 8918482 Nhal_3471 Nitrosococcus halophilus Nc4 ABC transporter YP_003528885.1 3580417 D 472759 CDS YP_003528886.1 292493447 8918483 3581221..3582054 1 NC_013960.1 KEGG: noc:Noc_2834 hypothetical protein; hypothetical protein 3582054 8918483 Nhal_3472 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528886.1 3581221 D 472759 CDS YP_003528887.1 292493448 8918484 3582086..3582883 1 NC_013960.1 KEGG: noc:Noc_2835 undecaprenyl pyrophosphate phosphatase; TIGRFAM: undecaprenol kinase; PFAM: bacitracin resistance protein BacA; undecaprenol kinase 3582883 8918484 Nhal_3473 Nitrosococcus halophilus Nc4 undecaprenol kinase YP_003528887.1 3582086 D 472759 CDS YP_003528888.1 292493449 8918485 3582987..3583415 1 NC_013960.1 TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13; KEGG: noc:Noc_2836 50S ribosomal protein L13; 50S ribosomal protein L13 3583415 8918485 Nhal_3474 Nitrosococcus halophilus Nc4 50S ribosomal protein L13 YP_003528888.1 3582987 D 472759 CDS YP_003528889.1 292493450 8918486 3583434..3583823 1 NC_013960.1 PFAM: ribosomal protein S9; KEGG: noc:Noc_2837 ribosomal protein S9; 30S ribosomal protein S9 3583823 8918486 Nhal_3475 Nitrosococcus halophilus Nc4 30S ribosomal protein S9 YP_003528889.1 3583434 D 472759 CDS YP_003528890.1 292493451 8918488 complement(3583940..3584254) 1 NC_013960.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: noc:Noc_2738 XRE family transcriptional regulator; hypothetical protein 3584254 8918488 Nhal_3476 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528890.1 3583940 R 472759 CDS YP_003528891.1 292493452 8918490 complement(3584647..3584961) 1 NC_013960.1 KEGG: gur:Gura_3008 XRE family plasmid maintenance system antidote protein; TIGRFAM: addiction module antidote protein, HigA family; PFAM: hypothetical protein; SMART: hypothetical protein; HigA family addiction module antidote protein 3584961 8918490 Nhal_3478 Nitrosococcus halophilus Nc4 HigA family addiction module antidote protein YP_003528891.1 3584647 R 472759 CDS YP_003528892.1 292493453 8918492 3585129..3585344 1 NC_013960.1 KEGG: sun:SUN_0701 hypothetical protein; hypothetical protein 3585344 8918492 Nhal_3480 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528892.1 3585129 D 472759 CDS YP_003528893.1 292493454 8918493 complement(3585530..3586009) 1 NC_013960.1 KEGG: bja:blr7005 hypothetical protein; hypothetical protein 3586009 8918493 Nhal_3481 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528893.1 3585530 R 472759 CDS YP_003528894.1 292493455 8918494 complement(3586225..3586365) 1 NC_013960.1 hypothetical protein 3586365 8918494 Nhal_3482 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528894.1 3586225 R 472759 CDS YP_003528895.1 292493456 8918495 complement(3587026..3587397) 1 NC_013960.1 KEGG: noc:Noc_0522 hypothetical protein; hypothetical protein 3587397 8918495 Nhal_3483 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528895.1 3587026 R 472759 CDS YP_003528896.1 292493457 8918496 3587638..3587868 1 NC_013960.1 TIGRFAM: prevent-host-death family protein; KEGG: rbo:A1I_03755 antitoxin of toxin-antitoxin (TA) system Phd; prevent-host-death family protein 3587868 8918496 Nhal_3484 Nitrosococcus halophilus Nc4 prevent-host-death family protein YP_003528896.1 3587638 D 472759 CDS YP_003528897.1 292493458 8918498 3588299..3590149 1 NC_013960.1 PFAM: sodium/hydrogen exchanger; KEGG: noc:Noc_0521 sodium/hydrogen exchanger; sodium/hydrogen exchanger 3590149 8918498 Nhal_3486 Nitrosococcus halophilus Nc4 sodium/hydrogen exchanger YP_003528897.1 3588299 D 472759 CDS YP_003528898.1 292493459 8918499 3590276..3591178 1 NC_013960.1 PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: noc:Noc_2604 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent protein subunit beta 3591178 8918499 Nhal_3487 Nitrosococcus halophilus Nc4 pyridoxal-5'-phosphate-dependent protein subunit beta YP_003528898.1 3590276 D 472759 CDS YP_003528899.1 292493460 8918500 complement(3591165..3591677) 1 NC_013960.1 PFAM: Sarcosine oxidase subunit gamma; KEGG: bvi:Bcep1808_7299 sarcosine oxidase subunit gamma; sarcosine oxidase subunit gamma 3591677 8918500 Nhal_3488 Nitrosococcus halophilus Nc4 sarcosine oxidase subunit gamma YP_003528899.1 3591165 R 472759 CDS YP_003528900.1 292493461 8918501 complement(3591677..3594616) 1 NC_013960.1 TIGRFAM: sarcosine oxidase subunit alpha family; PFAM: glycine cleavage T protein (aminomethyl transferase); FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pub:SAR11_1282 sarcosine oxidase alpha chain; sarcosine oxidase subunit alpha 3594616 8918501 Nhal_3489 Nitrosococcus halophilus Nc4 sarcosine oxidase subunit alpha YP_003528900.1 3591677 R 472759 CDS YP_003528901.1 292493462 8918502 complement(3594613..3594885) 1 NC_013960.1 PFAM: Sarcosine oxidase subunit delta heterotetrameric; KEGG: bxe:Bxe_B1599 SoxD; sarcosine oxidase subunit delta 3594885 8918502 Nhal_3490 Nitrosococcus halophilus Nc4 sarcosine oxidase subunit delta YP_003528901.1 3594613 R 472759 CDS YP_003528902.1 292493463 8918503 complement(3594901..3596160) 1 NC_013960.1 TIGRFAM: sarcosine oxidase subunit beta family; PFAM: FAD dependent oxidoreductase; KEGG: pub:SAR11_1284 sarcosine oxidase subunit beta; sarcosine oxidase subunit beta 3596160 8918503 Nhal_3491 Nitrosococcus halophilus Nc4 sarcosine oxidase subunit beta YP_003528902.1 3594901 R 472759 CDS YP_003528903.1 292493464 8918504 3596298..3597782 1 NC_013960.1 PFAM: aldehyde dehydrogenase; KEGG: noc:Noc_2605 aldehyde dehydrogenase; Retinal dehydrogenase 3597782 8918504 Nhal_3492 Nitrosococcus halophilus Nc4 Retinal dehydrogenase YP_003528903.1 3596298 D 472759 CDS YP_003528904.1 292493465 8918505 3597791..3598831 1 NC_013960.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: noc:Noc_2606 threonine aldolase; threonine aldolase 3598831 8918505 Nhal_3493 Nitrosococcus halophilus Nc4 threonine aldolase YP_003528904.1 3597791 D 472759 CDS YP_003528905.1 292493466 8918506 3598831..3599970 1 NC_013960.1 TIGRFAM: acetylornithine deacetylase (ArgE); acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: noc:Noc_2607 acetylornithine deacetylase ArgE; acetylornithine deacetylase (ArgE) 3599970 8918506 Nhal_3494 Nitrosococcus halophilus Nc4 acetylornithine deacetylase (ArgE) YP_003528905.1 3598831 D 472759 CDS YP_003528906.1 292493467 8918507 3600014..3601366 1 NC_013960.1 PFAM: peptidase M24; creatinase; KEGG: noc:Noc_2608 peptidase M24; peptidase M24 3601366 8918507 Nhal_3495 Nitrosococcus halophilus Nc4 peptidase M24 YP_003528906.1 3600014 D 472759 CDS YP_003528907.1 292493468 8918508 complement(3601560..3601847) 1 NC_013960.1 KEGG: bpy:Bphyt_4005 hypothetical protein; hypothetical protein 3601847 8918508 Nhal_3496 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528907.1 3601560 R 472759 CDS YP_003528908.1 292493469 8918509 complement(3601976..3602071) 1 NC_013960.1 hypothetical protein 3602071 8918509 Nhal_3497 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528908.1 3601976 R 472759 CDS YP_003528909.1 292493470 8918510 3602425..3602634 1 NC_013960.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: noc:Noc_2609 cold-shock protein, DNA-binding; Cold-shock protein DNA-binding protein 3602634 8918510 Nhal_3498 Nitrosococcus halophilus Nc4 Cold-shock protein DNA-binding protein YP_003528909.1 3602425 D 472759 CDS YP_003528910.1 292493471 8918511 3602713..3602988 1 NC_013960.1 PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: noc:Noc_2610 RNA-binding protein, RNP-1; RNP-1 like RNA-binding protein 3602988 8918511 Nhal_3499 Nitrosococcus halophilus Nc4 RNP-1 like RNA-binding protein YP_003528910.1 3602713 D 472759 CDS YP_003528911.1 292493472 8918512 3603099..3604613 1 NC_013960.1 PFAM: DEAD/DEAH box helicase; helicase domain protein; SMART: DEAD-like helicase ; helicase; KEGG: noc:Noc_2611 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase 3604613 8918512 Nhal_3500 Nitrosococcus halophilus Nc4 DEAD/DEAH box helicase YP_003528911.1 3603099 D 472759 CDS YP_003528912.1 292493473 8918513 complement(3604682..3605788) 1 NC_013960.1 PFAM: multicopper oxidase type 2; KEGG: noc:Noc_2612 ferroxidase; ferroxidase 3605788 8918513 Nhal_3501 Nitrosococcus halophilus Nc4 ferroxidase YP_003528912.1 3604682 R 472759 CDS YP_003528913.1 292493474 8918514 3606056..3607477 1 NC_013960.1 TIGRFAM: rfaE bifunctional protein; cytidyltransferase-related domain protein; PFAM: PfkB domain protein; cytidylyltransferase; KEGG: noc:Noc_2613 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; rfaE bifunctional protein 3607477 8918514 Nhal_3502 Nitrosococcus halophilus Nc4 rfaE bifunctional protein YP_003528913.1 3606056 D 472759 CDS YP_003528914.1 292493475 8918515 3607490..3608443 1 NC_013960.1 TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: noc:Noc_2614 ADP-L-glycero-D-manno-heptose-6-epimerase; ADP-L-glycero-D-manno-heptose-6-epimerase 3608443 8918515 Nhal_3503 Nitrosococcus halophilus Nc4 ADP-L-glycero-D-manno-heptose-6-epimerase YP_003528914.1 3607490 D 472759 CDS YP_003528915.1 292493476 8918516 3608474..3609775 1 NC_013960.1 PFAM: 3-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: noc:Noc_2615 3-deoxy-D-manno-octulosonic-acid transferase-like; 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein 3609775 8918516 Nhal_3504 Nitrosococcus halophilus Nc4 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein YP_003528915.1 3608474 D 472759 CDS YP_003528916.1 292493477 8918517 complement(3609852..3611207) 1 NC_013960.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: noc:Noc_2616 type I secretion outer membrane protein, TolC; TolC family type I secretion outer membrane protein 3611207 8918517 Nhal_3505 Nitrosococcus halophilus Nc4 TolC family type I secretion outer membrane protein YP_003528916.1 3609852 R 472759 CDS YP_003528917.1 292493478 8918518 complement(3611242..3611880) 1 NC_013960.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; methyltransferase type 11; KEGG: noc:Noc_2617 protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase 3611880 8918518 Nhal_3506 Nitrosococcus halophilus Nc4 protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_003528917.1 3611242 R 472759 CDS YP_003528918.1 292493479 8918519 complement(3611969..3612211) 1 NC_013960.1 PFAM: SirA family protein; KEGG: noc:Noc_2618 SirA-like protein; SirA family protein 3612211 8918519 Nhal_3507 Nitrosococcus halophilus Nc4 SirA family protein YP_003528918.1 3611969 R 472759 CDS YP_003528919.1 292493480 8918520 3612370..3613824 1 NC_013960.1 PFAM: peptidase M48 Ste24p; Tetratricopeptide TPR_4; SMART: hypothetical protein; KEGG: noc:Noc_2619 peptidase M48, Ste24p; peptidase M48 Ste24p 3613824 8918520 Nhal_3508 Nitrosococcus halophilus Nc4 peptidase M48 Ste24p YP_003528919.1 3612370 D 472759 CDS YP_003528920.1 292493481 8918521 3614047..3614118 1 NC_013960.1 TIGRFAM: coenzyme PQQ biosynthesis protein A; PFAM: coenzyme PQQ biosynthesis protein A; KEGG: pmy:Pmen_1965 coenzyme PQQ synthesis protein PqqA; coenzyme PQQ biosynthesis protein A 3614118 8918521 Nhal_3509 Nitrosococcus halophilus Nc4 coenzyme PQQ biosynthesis protein A YP_003528920.1 3614047 D 472759 CDS YP_003528921.1 292493482 8918522 3614192..3615112 1 NC_013960.1 TIGRFAM: coenzyme PQQ biosynthesis protein B; KEGG: noc:Noc_2620 pyrroloquinoline quinone biosynthesis protein PqqB; coenzyme PQQ biosynthesis protein B 3615112 8918522 Nhal_3510 Nitrosococcus halophilus Nc4 coenzyme PQQ biosynthesis protein B YP_003528921.1 3614192 D 472759 CDS YP_003528922.1 292493483 8918523 3615129..3615851 1 NC_013960.1 KEGG: noc:Noc_2621 pyrroloquinoline quinone biosynthesis protein PqqC; TIGRFAM: coenzyme PQQ biosynthesis protein C; PFAM: TENA/THI-4 domain protein; coenzyme PQQ biosynthesis protein C 3615851 8918523 Nhal_3511 Nitrosococcus halophilus Nc4 coenzyme PQQ biosynthesis protein C YP_003528922.1 3615129 D 472759 CDS YP_003528923.1 292493484 8918524 3615860..3616129 1 NC_013960.1 PFAM: coenzyme PQQ synthesis D; KEGG: noc:Noc_2622 pyrroloquinoline quinone biosynthesis protein PqqD; coenzyme PQQ synthesis D 3616129 8918524 Nhal_3512 Nitrosococcus halophilus Nc4 coenzyme PQQ synthesis D YP_003528923.1 3615860 D 472759 CDS YP_003528924.1 292493485 8918525 3616098..3617249 1 NC_013960.1 KEGG: noc:Noc_2623 pyrroloquinoline quinone biosynthesis protein PqqE; TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; coenzyme PQQ biosynthesis protein E 3617249 8918525 Nhal_3513 Nitrosococcus halophilus Nc4 coenzyme PQQ biosynthesis protein E YP_003528924.1 3616098 D 472759 CDS YP_003528925.1 292493486 8918526 3617249..3618190 1 NC_013960.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gsu:GSU0011 ABC transporter ATP-binding protein; ABC transporter 3618190 8918526 Nhal_3514 Nitrosococcus halophilus Nc4 ABC transporter YP_003528925.1 3617249 D 472759 CDS YP_003528926.1 292493487 8918527 3618193..3618996 1 NC_013960.1 PFAM: ABC transporter; KEGG: reh:H16_B1044 ABC-type multidrug transporter; multidrug ABC transporter 3618996 8918527 Nhal_3515 Nitrosococcus halophilus Nc4 multidrug ABC transporter YP_003528926.1 3618193 D 472759 CDS YP_003528927.1 292493488 8918528 complement(3619092..3619277) 1 NC_013960.1 KEGG: noc:Noc_2624 hypothetical protein; hypothetical protein 3619277 8918528 Nhal_3516 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528927.1 3619092 R 472759 CDS YP_003528928.1 292493489 8918529 complement(3619342..3619491) 1 NC_013960.1 KEGG: dal:Dalk_3332 plasmid pRiA4b ORF-3 family protein; hypothetical protein 3619491 8918529 Nhal_3517 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528928.1 3619342 R 472759 CDS YP_003528929.1 292493490 8918530 3619605..3620528 1 NC_013960.1 PFAM: Kelch repeat-containing protein; Kelch repeat protein; SMART: Kelch repeat-containing protein; KEGG: noc:Noc_0230 hypothetical protein; Kelch repeat-containing protein 3620528 8918530 Nhal_3518 Nitrosococcus halophilus Nc4 Kelch repeat-containing protein YP_003528929.1 3619605 D 472759 CDS YP_003528930.1 292493491 8918531 complement(3620566..3621609) 1 NC_013960.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD; transferase hexapeptide repeat containing protein; KEGG: noc:Noc_0229 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase, LpxD; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 3621609 8918531 Nhal_3519 Nitrosococcus halophilus Nc4 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase YP_003528930.1 3620566 R 472759 CDS YP_003528931.1 292493492 8918532 complement(3621667..3622086) 1 NC_013960.1 PFAM: conserved hypothetical protein; KEGG: noc:Noc_0228 hypothetical protein; hypothetical protein 3622086 8918532 Nhal_3520 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528931.1 3621667 R 472759 CDS YP_003528932.1 292493493 8918533 3622468..3622764 1 NC_013960.1 KEGG: bac:BamMC406_0916 hypothetical protein; hypothetical protein 3622764 8918533 Nhal_3521 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528932.1 3622468 D 472759 CDS YP_003528933.1 292493494 8918534 3622761..3623249 1 NC_013960.1 KEGG: pca:Pcar_0789 hypothetical protein; hypothetical protein 3623249 8918534 Nhal_3522 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528933.1 3622761 D 472759 CDS YP_003528934.1 292493495 8918535 3623253..3623738 1 NC_013960.1 KEGG: pfs:PFLU4126C hypothetical protein; hypothetical protein 3623738 8918535 Nhal_3523 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528934.1 3623253 D 472759 CDS YP_003528935.1 292493496 8918536 complement(3623746..3625116) 1 NC_013960.1 TIGRFAM: DNA repair protein RadA; SMART: ATPase AAA; KEGG: noc:Noc_0225 DNA repair protein RadA; DNA repair protein RadA 3625116 8918536 Nhal_3524 Nitrosococcus halophilus Nc4 DNA repair protein RadA YP_003528935.1 3623746 R 472759 CDS YP_003528936.1 292493497 8918537 complement(3625121..3626191) 1 NC_013960.1 KEGG: noc:Noc_0224 alanine racemase region; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 3626191 8918537 Nhal_3525 Nitrosococcus halophilus Nc4 alanine racemase YP_003528936.1 3625121 R 472759 CDS YP_003528937.1 292493498 8918538 complement(3626244..3627644) 1 NC_013960.1 KEGG: noc:Noc_0223 DnaB helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase; SMART: ATPase AAA; replicative DNA helicase 3627644 8918538 Nhal_3526 Nitrosococcus halophilus Nc4 replicative DNA helicase YP_003528937.1 3626244 R 472759 CDS YP_003528938.1 292493499 8918539 complement(3627726..3628178) 1 NC_013960.1 TIGRFAM: ribosomal protein L9; PFAM: ribosomal protein L9; KEGG: noc:Noc_0222 ribosomal protein L9; 50S ribosomal protein L9 3628178 8918539 Nhal_3527 Nitrosococcus halophilus Nc4 50S ribosomal protein L9 YP_003528938.1 3627726 R 472759 CDS YP_003528939.1 292493500 8918540 complement(3628286..3628510) 1 NC_013960.1 TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; KEGG: noc:Noc_0221 ribosomal protein S18; 30S ribosomal protein S18 3628510 8918540 Nhal_3528 Nitrosococcus halophilus Nc4 30S ribosomal protein S18 YP_003528939.1 3628286 R 472759 CDS YP_003528940.1 292493501 8918541 complement(3628679..3629125) 1 NC_013960.1 TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6; KEGG: noc:Noc_0220 ribosomal protein S6; 30S ribosomal protein S6 3629125 8918541 Nhal_3529 Nitrosococcus halophilus Nc4 30S ribosomal protein S6 YP_003528940.1 3628679 R 472759 CDS YP_003528941.1 292493502 8918542 complement(3629262..3630011) 1 NC_013960.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: noc:Noc_0219 RNA methyltransferase TrmH, group 3; TrmH family RNA methyltransferase 3630011 8918542 Nhal_3530 Nitrosococcus halophilus Nc4 TrmH family RNA methyltransferase YP_003528941.1 3629262 R 472759 CDS YP_003528942.1 292493503 8918543 complement(3630346..3631140) 1 NC_013960.1 hypothetical protein 3631140 8918543 Nhal_3531 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528942.1 3630346 R 472759 CDS YP_003528943.1 292493504 8918544 3631425..3633515 1 NC_013960.1 KEGG: noc:Noc_2452 multisensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; hypothetical protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein; PAS sensor protein 3633515 8918544 Nhal_3532 Nitrosococcus halophilus Nc4 PAS sensor protein YP_003528943.1 3631425 D 472759 CDS YP_003528944.1 292493505 8918545 3633517..3633891 1 NC_013960.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: slo:Shew_3240 two component LuxR family transcriptional regulator; response regulator receiver 3633891 8918545 Nhal_3533 Nitrosococcus halophilus Nc4 response regulator receiver YP_003528944.1 3633517 D 472759 CDS YP_003528945.1 292493506 8918546 complement(3633904..3635856) 1 NC_013960.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: noc:Noc_0218 alpha amylase, catalytic region; alpha amylase catalytic subunit 3635856 8918546 Nhal_3534 Nitrosococcus halophilus Nc4 alpha amylase catalytic subunit YP_003528945.1 3633904 R 472759 CDS YP_003528946.1 292493507 8918547 3635892..3636386 1 NC_013960.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: pca:Pcar_3010 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 3636386 8918547 Nhal_3535 Nitrosococcus halophilus Nc4 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_003528946.1 3635892 D 472759 CDS YP_003528947.1 292493508 8918548 3636386..3638557 1 NC_013960.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: dat:HRM2_42990 PpsA8; pyruvate phosphate dikinase PEP/pyruvate-binding protein 3638557 8918548 Nhal_3536 Nitrosococcus halophilus Nc4 pyruvate phosphate dikinase PEP/pyruvate-binding protein YP_003528947.1 3636386 D 472759 CDS YP_003528948.1 292493509 8918549 3638793..3640016 1 NC_013960.1 PFAM: FAD dependent oxidoreductase; KEGG: bpy:Bphyt_0284 FAD dependent oxidoreductase; FAD dependent oxidoreductase 3640016 8918549 Nhal_3537 Nitrosococcus halophilus Nc4 FAD dependent oxidoreductase YP_003528948.1 3638793 D 472759 CDS YP_003528949.1 292493510 8918550 complement(3640116..3640781) 1 NC_013960.1 PFAM: endonuclease V; KEGG: noc:Noc_0217 deoxyribonuclease V; deoxyribonuclease V 3640781 8918550 Nhal_3538 Nitrosococcus halophilus Nc4 deoxyribonuclease V YP_003528949.1 3640116 R 472759 CDS YP_003528950.1 292493511 8918551 3640830..3641345 1 NC_013960.1 TIGRFAM: molybdenum cofactor biosynthesis protein B; molybdenum cofactor synthesis protein; PFAM: molybdopterin binding domain; KEGG: mca:MCA2156 molybdenum cofactor biosynthesis protein B; molybdenum cofactor biosynthesis protein B 3641345 8918551 Nhal_3539 Nitrosococcus halophilus Nc4 molybdenum cofactor biosynthesis protein B YP_003528950.1 3640830 D 472759 CDS YP_003528951.1 292493512 8918552 3641335..3641583 1 NC_013960.1 PFAM: glutaredoxin 2; KEGG: noc:Noc_0216 glutaredoxin 2; glutaredoxin 2 3641583 8918552 Nhal_3540 Nitrosococcus halophilus Nc4 glutaredoxin 2 YP_003528951.1 3641335 D 472759 CDS YP_003528952.1 292493513 8918553 complement(3641626..3642474) 1 NC_013960.1 PFAM: protein of unknown function DUF1568; KEGG: tbd:Tbd_1967 hypothetical protein; hypothetical protein 3642474 8918553 Nhal_3541 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528952.1 3641626 R 472759 CDS YP_003528953.1 292493514 8918554 complement(3642567..3642905) 1 NC_013960.1 KEGG: noc:Noc_0979 hypothetical protein; hypothetical protein 3642905 8918554 Nhal_3542 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528953.1 3642567 R 472759 CDS YP_003528954.1 292493515 8918555 complement(3643039..3643452) 1 NC_013960.1 KEGG: csa:Csal_1035 hypothetical protein; hypothetical protein 3643452 8918555 Nhal_3543 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528954.1 3643039 R 472759 CDS YP_003528955.1 292493516 8918556 3643744..3645252 1 NC_013960.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: tgr:Tgr7_0021 histidine kinase; ATP-binding region ATPase domain-containing protein 3645252 8918556 Nhal_3544 Nitrosococcus halophilus Nc4 ATP-binding region ATPase domain-containing protein YP_003528955.1 3643744 D 472759 CDS YP_003528956.1 292493517 8918557 3645227..3646624 1 NC_013960.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: psa:PST_0364 mutant NtrC-like activator; Fis family transcriptional regulator 3646624 8918557 Nhal_3545 Nitrosococcus halophilus Nc4 Fis family transcriptional regulator YP_003528956.1 3645227 D 472759 CDS YP_003528957.1 292493518 8918558 complement(3646671..3647081) 1 NC_013960.1 KEGG: noc:Noc_1063 hypothetical protein; hypothetical protein 3647081 8918558 Nhal_3546 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528957.1 3646671 R 472759 CDS YP_003528958.1 292493519 8918560 complement(3650027..3652318) 1 NC_013960.1 PFAM: CHASE2 domain protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: noc:Noc_1062 adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain-containing protein 3652318 8918560 Nhal_3548 Nitrosococcus halophilus Nc4 CHASE2 domain-containing protein YP_003528958.1 3650027 R 472759 CDS YP_003528959.1 292493520 8918561 3652437..3653081 1 NC_013960.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: noc:Noc_1061 Crp family transcriptional regulator; cyclic nucleotide-binding protein 3653081 8918561 Nhal_3549 Nitrosococcus halophilus Nc4 cyclic nucleotide-binding protein YP_003528959.1 3652437 D 472759 CDS YP_003528960.1 292493521 8918562 3653261..3653719 1 NC_013960.1 PFAM: pentapeptide repeat protein; KEGG: noc:Noc_1060 pentapeptide repeat-containing protein; pentapeptide repeat-containing protein 3653719 8918562 Nhal_3550 Nitrosococcus halophilus Nc4 pentapeptide repeat-containing protein YP_003528960.1 3653261 D 472759 CDS YP_003528961.1 292493522 8918563 3653832..3654317 1 NC_013960.1 KEGG: noc:Noc_1059 hypothetical protein; hypothetical protein 3654317 8918563 Nhal_3551 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528961.1 3653832 D 472759 CDS YP_003528962.1 292493523 8918564 complement(3654404..3655726) 1 NC_013960.1 KEGG: cps:CPS_3313 lipoprotein; lipoprotein 3655726 8918564 Nhal_3552 Nitrosococcus halophilus Nc4 lipoprotein YP_003528962.1 3654404 R 472759 CDS YP_003528963.1 292493524 8918565 3656014..3658008 1 NC_013960.1 PFAM: glucose sorbosone dehydrogenase; NHL repeat containing protein; SMP-30/gluconolaconase/LRE domain protein; KEGG: mfa:Mfla_0535 NHL repeat-containing protein; glucose sorbosone dehydrogenase 3658008 8918565 Nhal_3553 Nitrosococcus halophilus Nc4 glucose sorbosone dehydrogenase YP_003528963.1 3656014 D 472759 CDS YP_003528964.1 292493525 8918566 3658063..3658878 1 NC_013960.1 PFAM: protein of unknown function DUF548; KEGG: noc:Noc_1058 hypothetical protein; hypothetical protein 3658878 8918566 Nhal_3554 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528964.1 3658063 D 472759 CDS YP_003528965.1 292493526 8918567 3658993..3659451 1 NC_013960.1 KEGG: noc:Noc_1057 hypothetical protein; hypothetical protein 3659451 8918567 Nhal_3555 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528965.1 3658993 D 472759 CDS YP_003528966.1 292493527 8918568 3659492..3659833 1 NC_013960.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: noc:Noc_1056 CutA1 divalent ion tolerance protein; CutA1 divalent ion tolerance protein 3659833 8918568 Nhal_3556 Nitrosococcus halophilus Nc4 CutA1 divalent ion tolerance protein YP_003528966.1 3659492 D 472759 CDS YP_003528967.1 292493528 8918569 3659830..3661713 1 NC_013960.1 PFAM: cytochrome C biogenesis protein transmembrane region; KEGG: noc:Noc_1055 cytochrome C biogenesis protein, transmembrane region; cytochrome C biogenesis protein transmembrane region 3661713 8918569 Nhal_3557 Nitrosococcus halophilus Nc4 cytochrome C biogenesis protein transmembrane region YP_003528967.1 3659830 D 472759 CDS YP_003528968.1 292493529 8918570 3661710..3662231 1 NC_013960.1 PFAM: redoxin; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: noc:Noc_1054 thioredoxin; redoxin 3662231 8918570 Nhal_3558 Nitrosococcus halophilus Nc4 redoxin YP_003528968.1 3661710 D 472759 CDS YP_003528969.1 292493530 8918571 3662453..3662896 1 NC_013960.1 KEGG: noc:Noc_1053 3-dehydroquinate dehydratase; TIGRFAM: 3-dehydroquinate dehydratase, type II; PFAM: dehydroquinase class II; 3-dehydroquinate dehydratase, type II 3662896 8918571 Nhal_3559 Nitrosococcus halophilus Nc4 3-dehydroquinate dehydratase, type II YP_003528969.1 3662453 D 472759 CDS YP_003528970.1 292493531 8918572 3662951..3663397 1 NC_013960.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: noc:Noc_1052 acetyl-CoA biotin carboxyl carrier; acetyl-CoA carboxylase, biotin carboxyl carrier protein 3663397 8918572 Nhal_3560 Nitrosococcus halophilus Nc4 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_003528970.1 3662951 D 472759 CDS YP_003528971.1 292493532 8918573 3663402..3664742 1 NC_013960.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; carbamoyl-phosphate synthetase large chain domain protein; KEGG: noc:Noc_1051 acetyl-CoA carboxylase, biotin carboxylase; acetyl-CoA carboxylase, biotin carboxylase 3664742 8918573 Nhal_3561 Nitrosococcus halophilus Nc4 acetyl-CoA carboxylase, biotin carboxylase YP_003528971.1 3663402 D 472759 CDS YP_003528972.1 292493533 8918574 3664760..3665638 1 NC_013960.1 TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase; KEGG: noc:Noc_1050 ribosomal protein L11 methyltransferase; 50S ribosomal protein L11 methyltransferase 3665638 8918574 Nhal_3562 Nitrosococcus halophilus Nc4 50S ribosomal protein L11 methyltransferase YP_003528972.1 3664760 D 472759 CDS YP_003528973.1 292493534 8918575 3665768..3666091 1 NC_013960.1 PFAM: helix-turn-helix Fis-type; KEGG: noc:Noc_1049 helix-turn-helix, fis-type; helix-turn-helix Fis-type 3666091 8918575 Nhal_3563 Nitrosococcus halophilus Nc4 helix-turn-helix Fis-type YP_003528973.1 3665768 D 472759 CDS YP_003528974.1 292493535 8918576 3666182..3667750 1 NC_013960.1 KEGG: noc:Noc_1048 IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; SMART: AICARFT/IMPCHase bienzyme formylation region; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 3667750 8918576 Nhal_3564 Nitrosococcus halophilus Nc4 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_003528974.1 3666182 D 472759 CDS YP_003528975.1 292493536 8918577 3667904..3670738 1 NC_013960.1 PFAM: adenylate cyclase class-I; KEGG: pmy:Pmen_0273 adenylate cyclase; adenylate cyclase 3670738 8918577 Nhal_3565 Nitrosococcus halophilus Nc4 adenylate cyclase YP_003528975.1 3667904 D 472759 CDS YP_003528976.1 292493537 8918578 3670807..3671838 1 NC_013960.1 KEGG: noc:Noc_1047 N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: semialdehyde dehydrogenase NAD - binding; semialdehyde dehydrogenase dimerisation region; N-acetyl-gamma-glutamyl-phosphate reductase 3671838 8918578 Nhal_3566 Nitrosococcus halophilus Nc4 N-acetyl-gamma-glutamyl-phosphate reductase YP_003528976.1 3670807 D 472759 CDS YP_003528977.1 292493538 8918579 3671877..3672599 1 NC_013960.1 KEGG: noc:Noc_1046 hypothetical protein; hypothetical protein 3672599 8918579 Nhal_3567 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528977.1 3671877 D 472759 CDS YP_003528978.1 292493539 8918580 3672655..3673104 1 NC_013960.1 PFAM: protein of unknown function DUF583; KEGG: noc:Noc_1045 hypothetical protein; hypothetical protein 3673104 8918580 Nhal_3568 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528978.1 3672655 D 472759 CDS YP_003528979.1 292493540 8918581 3673167..3673526 1 NC_013960.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: noc:Noc_1044 HesB/YadR/YfhF; iron-sulfur cluster assembly accessory protein 3673526 8918581 Nhal_3569 Nitrosococcus halophilus Nc4 iron-sulfur cluster assembly accessory protein YP_003528979.1 3673167 D 472759 CDS YP_003528980.1 292493541 8918582 3673618..3673932 1 NC_013960.1 KEGG: noc:Noc_1043 Fe2-S2-type ferredoxin; Fe2-S2-type ferredoxin 3673932 8918582 Nhal_3570 Nitrosococcus halophilus Nc4 Fe2-S2-type ferredoxin YP_003528980.1 3673618 D 472759 CDS YP_003528981.1 292493542 8918583 3673960..3674826 1 NC_013960.1 KEGG: noc:Noc_1042 squalene/phytoene synthase; TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; squalene synthase HpnD 3674826 8918583 Nhal_3571 Nitrosococcus halophilus Nc4 squalene synthase HpnD YP_003528981.1 3673960 D 472759 CDS YP_003528982.1 292493543 8918584 complement(3674851..3675651) 1 NC_013960.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; KEGG: noc:Noc_1041 pseudouridine synthase, Rsu; RNA-binding S4 domain-containing protein 3675651 8918584 Nhal_3572 Nitrosococcus halophilus Nc4 RNA-binding S4 domain-containing protein YP_003528982.1 3674851 R 472759 CDS YP_003528983.1 292493544 8918585 complement(3675679..3676347) 1 NC_013960.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: noc:Noc_1040 chromosome segregation and condensation protein ScpB; segregation and condensation protein B 3676347 8918585 Nhal_3573 Nitrosococcus halophilus Nc4 segregation and condensation protein B YP_003528983.1 3675679 R 472759 CDS YP_003528984.1 292493545 8918586 complement(3676344..3677153) 1 NC_013960.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: noc:Noc_1039 chromosome segregation and condensation protein ScpA; chromosome segregation and condensation protein ScpA 3677153 8918586 Nhal_3574 Nitrosococcus halophilus Nc4 chromosome segregation and condensation protein ScpA YP_003528984.1 3676344 R 472759 CDS YP_003528985.1 292493546 8918587 complement(3677206..3678423) 1 NC_013960.1 KEGG: noc:Noc_1038 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; tryptophanyl-tRNA synthetase 3678423 8918587 Nhal_3575 Nitrosococcus halophilus Nc4 tryptophanyl-tRNA synthetase YP_003528985.1 3677206 R 472759 CDS YP_003528986.1 292493547 8918588 complement(3678446..3679147) 1 NC_013960.1 PFAM: peptidase M50; KEGG: noc:Noc_1037 peptidase M50; peptidase M50 3679147 8918588 Nhal_3576 Nitrosococcus halophilus Nc4 peptidase M50 YP_003528986.1 3678446 R 472759 CDS YP_003528987.1 292493548 8918589 complement(3679215..3680504) 1 NC_013960.1 KEGG: noc:Noc_1036 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like; seryl-tRNA synthetase 3680504 8918589 Nhal_3577 Nitrosococcus halophilus Nc4 seryl-tRNA synthetase YP_003528987.1 3679215 R 472759 CDS YP_003528988.1 292493549 8918590 complement(3680497..3680631) 1 NC_013960.1 KEGG: noc:Noc_1035 hypothetical protein; hypothetical protein 3680631 8918590 Nhal_3578 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528988.1 3680497 R 472759 CDS YP_003528989.1 292493550 8918591 3680740..3681159 1 NC_013960.1 KEGG: sat:SYN_03187 hypothetical protein; hypothetical protein 3681159 8918591 Nhal_3579 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528989.1 3680740 D 472759 CDS YP_003528990.1 292493551 8918592 3681168..3681734 1 NC_013960.1 PFAM: NLP/P60 protein; KEGG: nmu:Nmul_A1592 NLP/P60; NLP/P60 protein 3681734 8918592 Nhal_3580 Nitrosococcus halophilus Nc4 NLP/P60 protein YP_003528990.1 3681168 D 472759 CDS YP_003528991.1 292493552 8918593 3681721..3682038 1 NC_013960.1 PFAM: small multidrug resistance protein; KEGG: noc:Noc_2235 small multidrug resistance protein; small multidrug resistance protein 3682038 8918593 Nhal_3581 Nitrosococcus halophilus Nc4 small multidrug resistance protein YP_003528991.1 3681721 D 472759 CDS YP_003528992.1 292493553 8918594 3682043..3682783 1 NC_013960.1 PFAM: TrkA-C domain protein; KEGG: dvm:DvMF_0453 TrkA-N domain protein; TrkA-C domain-containing protein 3682783 8918594 Nhal_3582 Nitrosococcus halophilus Nc4 TrkA-C domain-containing protein YP_003528992.1 3682043 D 472759 CDS YP_003528993.1 292493554 8918595 3682780..3683469 1 NC_013960.1 PFAM: glutamine amidotransferase class-I; KEGG: noc:Noc_2237 glutamine amidotransferase class-I; glutamine amidotransferase class-I 3683469 8918595 Nhal_3583 Nitrosococcus halophilus Nc4 glutamine amidotransferase class-I YP_003528993.1 3682780 D 472759 CDS YP_003528994.1 292493555 8918596 complement(3683466..3684689) 1 NC_013960.1 TIGRFAM: threonine dehydratase; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; amino acid-binding ACT domain protein; KEGG: dac:Daci_0116 threonine dehydratase; threonine dehydratase 3684689 8918596 Nhal_3584 Nitrosococcus halophilus Nc4 threonine dehydratase YP_003528994.1 3683466 R 472759 CDS YP_003528995.1 292493556 8918597 3684818..3685756 1 NC_013960.1 KEGG: noc:Noc_2220 hypothetical protein; hypothetical protein 3685756 8918597 Nhal_3585 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528995.1 3684818 D 472759 CDS YP_003528996.1 292493557 8918598 3685759..3687792 1 NC_013960.1 PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: noc:Noc_2221 peptidase S15; peptidase S15 3687792 8918598 Nhal_3586 Nitrosococcus halophilus Nc4 peptidase S15 YP_003528996.1 3685759 D 472759 CDS YP_003528997.1 292493558 8918599 complement(3687834..3688886) 1 NC_013960.1 PFAM: D-alanine--D-alanine ligase domain protein; protein of unknown function DUF201; KEGG: noc:Noc_2222 hypothetical protein; D-alanine--D-alanine ligase 3688886 8918599 Nhal_3587 Nitrosococcus halophilus Nc4 D-alanine--D-alanine ligase YP_003528997.1 3687834 R 472759 CDS YP_003528998.1 292493559 8918600 3689004..3689648 1 NC_013960.1 PFAM: protein of unknown function DUF107; KEGG: noc:Noc_2223 hypothetical protein; hypothetical protein 3689648 8918600 Nhal_3588 Nitrosococcus halophilus Nc4 hypothetical protein YP_003528998.1 3689004 D 472759 CDS YP_003528999.1 292493560 8918601 complement(3689656..3691689) 1 NC_013960.1 PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; TrkA-C domain protein; KEGG: tbd:Tbd_0539 antiporter-2, CPA2 family monovalent cation/proton antiporter; sodium/hydrogen exchanger 3691689 8918601 Nhal_3589 Nitrosococcus halophilus Nc4 sodium/hydrogen exchanger YP_003528999.1 3689656 R 472759 CDS YP_003529000.1 292493561 8918602 3691778..3693811 1 NC_013960.1 TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain IV; protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: noc:Noc_2225 elongation factor G; small GTP-binding protein 3693811 8918602 Nhal_3590 Nitrosococcus halophilus Nc4 small GTP-binding protein YP_003529000.1 3691778 D 472759 CDS YP_003529001.1 292493562 8918603 3693901..3694242 1 NC_013960.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: noc:Noc_2226 transcriptional coactivator/pterin dehydratase; transcriptional coactivator/pterin dehydratase 3694242 8918603 Nhal_3591 Nitrosococcus halophilus Nc4 transcriptional coactivator/pterin dehydratase YP_003529001.1 3693901 D 472759 CDS YP_003529002.1 292493563 8918604 complement(3694214..3694945) 1 NC_013960.1 KEGG: noc:Noc_2227 membrane-bound metal-dependent hydrolase; membrane-bound metal-dependent hydrolase 3694945 8918604 Nhal_3592 Nitrosococcus halophilus Nc4 membrane-bound metal-dependent hydrolase YP_003529002.1 3694214 R 472759 CDS YP_003529003.1 292493564 8918605 3694954..3695757 1 NC_013960.1 PFAM: protein of unknown function DUF1499; KEGG: noc:Noc_2228 hypothetical protein; hypothetical protein 3695757 8918605 Nhal_3593 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529003.1 3694954 D 472759 CDS YP_003529004.1 292493565 8918606 complement(3695820..3699434) 1 NC_013960.1 KEGG: noc:Noc_2229 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; protein of unknown function DUF1631; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; diguanylate cyclase 3699434 8918606 Nhal_3594 Nitrosococcus halophilus Nc4 diguanylate cyclase YP_003529004.1 3695820 R 472759 CDS YP_003529005.1 292493566 8918607 3699721..3700449 1 NC_013960.1 KEGG: noc:Noc_2230 hypothetical protein; hypothetical protein 3700449 8918607 Nhal_3595 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529005.1 3699721 D 472759 CDS YP_003529006.1 292493567 8918608 3700468..3701457 1 NC_013960.1 PFAM: polyprenyl synthetase; KEGG: noc:Noc_2231 polyprenyl synthetase; polyprenyl synthetase 3701457 8918608 Nhal_3596 Nitrosococcus halophilus Nc4 polyprenyl synthetase YP_003529006.1 3700468 D 472759 CDS YP_003529007.1 292493568 8918609 complement(3701467..3702162) 1 NC_013960.1 PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: noc:Noc_2232 UbiE/COQ5 methyltransferase; type 11 methyltransferase 3702162 8918609 Nhal_3597 Nitrosococcus halophilus Nc4 type 11 methyltransferase YP_003529007.1 3701467 R 472759 CDS YP_003529008.1 292493569 8918610 3702338..3702610 1 NC_013960.1 KEGG: noc:Noc_2233 hypothetical protein; hypothetical protein 3702610 8918610 Nhal_3598 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529008.1 3702338 D 472759 CDS YP_003529009.1 292493570 8918611 3702954..3703691 1 NC_013960.1 PFAM: integral membrane protein TerC; KEGG: noc:Noc_2234 integral membrane protein TerC; integral membrane protein TerC 3703691 8918611 Nhal_3599 Nitrosococcus halophilus Nc4 integral membrane protein TerC YP_003529009.1 3702954 D 472759 CDS YP_003529010.1 292493571 8918612 complement(3703713..3707261) 1 NC_013960.1 PFAM: MscS Mechanosensitive ion channel; KEGG: noc:Noc_2151 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS 3707261 8918612 Nhal_3600 Nitrosococcus halophilus Nc4 mechanosensitive ion channel MscS YP_003529010.1 3703713 R 472759 CDS YP_003529011.1 292493572 8918613 complement(3707296..3708513) 1 NC_013960.1 PFAM: integral membrane protein TerC; KEGG: noc:Noc_2152 integral membrane protein TerC; integral membrane protein TerC 3708513 8918613 Nhal_3601 Nitrosococcus halophilus Nc4 integral membrane protein TerC YP_003529011.1 3707296 R 472759 CDS YP_003529012.1 292493573 8918614 complement(3709080..3710210) 1 NC_013960.1 PFAM: radical SAM protein; KEGG: mca:MCA0073 pyruvate formate lyase-activating enzyme; radical SAM protein 3710210 8918614 Nhal_3602 Nitrosococcus halophilus Nc4 radical SAM protein YP_003529012.1 3709080 R 472759 CDS YP_003529013.1 292493574 8918615 3710330..3711115 1 NC_013960.1 PFAM: protein of unknown function DUF52; KEGG: mca:MCA0072 hypothetical protein; hypothetical protein 3711115 8918615 Nhal_3603 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529013.1 3710330 D 472759 CDS YP_003529014.1 292493575 8918616 3711102..3711674 1 NC_013960.1 PFAM: AMMECR1 domain protein; KEGG: mca:MCA0071 hypothetical protein; AMMECR1 domain-containing protein 3711674 8918616 Nhal_3604 Nitrosococcus halophilus Nc4 AMMECR1 domain-containing protein YP_003529014.1 3711102 D 472759 CDS YP_003529015.1 292493576 8918617 complement(3711686..3712420) 1 NC_013960.1 PFAM: pentapeptide repeat protein; KEGG: noc:Noc_2153 pentapeptide repeat-containing protein; pentapeptide repeat-containing protein 3712420 8918617 Nhal_3605 Nitrosococcus halophilus Nc4 pentapeptide repeat-containing protein YP_003529015.1 3711686 R 472759 CDS YP_003529016.1 292493577 8918618 complement(3712468..3712944) 1 NC_013960.1 KEGG: noc:Noc_2154 hypothetical protein; hypothetical protein 3712944 8918618 Nhal_3606 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529016.1 3712468 R 472759 CDS YP_003529017.1 292493578 8918619 complement(3712988..3713827) 1 NC_013960.1 PFAM: OmpA/MotB domain protein; KEGG: tgr:Tgr7_1344 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 3713827 8918619 Nhal_3607 Nitrosococcus halophilus Nc4 OmpA/MotB domain-containing protein YP_003529017.1 3712988 R 472759 CDS YP_003529018.1 292493579 8918620 complement(3713835..3714575) 1 NC_013960.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pau:PA14_45560 flagellar motor protein; MotA/TolQ/ExbB proton channel 3714575 8918620 Nhal_3608 Nitrosococcus halophilus Nc4 MotA/TolQ/ExbB proton channel YP_003529018.1 3713835 R 472759 CDS YP_003529019.1 292493580 8918621 complement(3714763..3715488) 1 NC_013960.1 TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; Sigma-70 region 4 type 2; KEGG: noc:Noc_2155 sigma28 (flagella); FliA/WhiG family RNA polymerase sigma factor 3715488 8918621 Nhal_3609 Nitrosococcus halophilus Nc4 FliA/WhiG family RNA polymerase sigma factor YP_003529019.1 3714763 R 472759 CDS YP_003529020.1 292493581 8918622 complement(3715485..3716402) 1 NC_013960.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: noc:Noc_2156 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase 3716402 8918622 Nhal_3610 Nitrosococcus halophilus Nc4 cobyrinic acid ac-diamide synthase YP_003529020.1 3715485 R 472759 CDS YP_003529021.1 292493582 8918623 complement(3716395..3717576) 1 NC_013960.1 PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: ATPase AAA; KEGG: noc:Noc_2157 flagellar biosynthesis regulator FlhF; GTP-binding signal recognition particle SRP54 G- domain-containing protein 3717576 8918623 Nhal_3611 Nitrosococcus halophilus Nc4 GTP-binding signal recognition particle SRP54 G- domain-containing protein YP_003529021.1 3716395 R 472759 CDS YP_003529022.1 292493583 8918624 complement(3717600..3719666) 1 NC_013960.1 TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: noc:Noc_2158 flagellar biosynthesis protein FlhA; flagellar biosynthesis protein FlhA 3719666 8918624 Nhal_3612 Nitrosococcus halophilus Nc4 flagellar biosynthesis protein FlhA YP_003529022.1 3717600 R 472759 CDS YP_003529023.1 292493584 8918625 complement(3719789..3720922) 1 NC_013960.1 TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: noc:Noc_2159 flagellar biosynthetic protein FlhB; flagellar biosynthetic protein FlhB 3720922 8918625 Nhal_3613 Nitrosococcus halophilus Nc4 flagellar biosynthetic protein FlhB YP_003529023.1 3719789 R 472759 CDS YP_003529024.1 292493585 8918626 complement(3720922..3721698) 1 NC_013960.1 TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: noc:Noc_2160 flagellar biosynthesis protein FliR; flagellar biosynthetic protein FliR 3721698 8918626 Nhal_3614 Nitrosococcus halophilus Nc4 flagellar biosynthetic protein FliR YP_003529024.1 3720922 R 472759 CDS YP_003529025.1 292493586 8918627 complement(3721703..3721972) 1 NC_013960.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: noc:Noc_2161 flagellar biosynthesis protein FliQ; flagellar biosynthetic protein FliQ 3721972 8918627 Nhal_3615 Nitrosococcus halophilus Nc4 flagellar biosynthetic protein FliQ YP_003529025.1 3721703 R 472759 CDS YP_003529026.1 292493587 8918628 complement(3721969..3722778) 1 NC_013960.1 TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; KEGG: noc:Noc_2162 flagellar biosynthesis protein FliP; flagellar biosynthetic protein FliP 3722778 8918628 Nhal_3616 Nitrosococcus halophilus Nc4 flagellar biosynthetic protein FliP YP_003529026.1 3721969 R 472759 CDS YP_003529027.1 292493588 8918629 complement(3722775..3723266) 1 NC_013960.1 PFAM: flagellar biosynthesis protein FliO; KEGG: noc:Noc_2163 flagellar biosynthesis protein, FliO; flagellar biosynthesis protein FliO 3723266 8918629 Nhal_3617 Nitrosococcus halophilus Nc4 flagellar biosynthesis protein FliO YP_003529027.1 3722775 R 472759 CDS YP_003529028.1 292493589 8918630 complement(3723263..3723721) 1 NC_013960.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: noc:Noc_2164 surface presentation of antigens (SpoA) protein; flagellar motor switch protein FliN 3723721 8918630 Nhal_3618 Nitrosococcus halophilus Nc4 flagellar motor switch protein FliN YP_003529028.1 3723263 R 472759 CDS YP_003529029.1 292493590 8918631 complement(3723705..3724754) 1 NC_013960.1 TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; KEGG: noc:Noc_2165 flagellar motor switch protein FliM; flagellar motor switch protein FliM 3724754 8918631 Nhal_3619 Nitrosococcus halophilus Nc4 flagellar motor switch protein FliM YP_003529029.1 3723705 R 472759 CDS YP_003529030.1 292493591 8918632 complement(3724758..3725276) 1 NC_013960.1 PFAM: flagellar basal body-associated protein FliL; KEGG: noc:Noc_2166 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL 3725276 8918632 Nhal_3620 Nitrosococcus halophilus Nc4 flagellar basal body-associated protein FliL YP_003529030.1 3724758 R 472759 CDS YP_003529031.1 292493592 8918633 complement(3725622..3726671) 1 NC_013960.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: noc:Noc_2167 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 3726671 8918633 Nhal_3621 Nitrosococcus halophilus Nc4 NAD-dependent epimerase/dehydratase YP_003529031.1 3725622 R 472759 CDS YP_003529032.1 292493593 8918634 complement(3726714..3727799) 1 NC_013960.1 PFAM: glycosyl transferase family 2; KEGG: noc:Noc_2168 glycosyl transferase; family 2 glycosyl transferase 3727799 8918634 Nhal_3622 Nitrosococcus halophilus Nc4 family 2 glycosyl transferase YP_003529032.1 3726714 R 472759 CDS YP_003529033.1 292493594 8918635 complement(3727936..3730404) 1 NC_013960.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: noc:Noc_2169 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8 and S53 subtilisin kexin sedolisin 3730404 8918635 Nhal_3623 Nitrosococcus halophilus Nc4 peptidase S8 and S53 subtilisin kexin sedolisin YP_003529033.1 3727936 R 472759 CDS YP_003529034.1 292493595 8918636 complement(3730546..3732411) 1 NC_013960.1 KEGG: noc:Noc_2170 hypothetical protein; hypothetical protein 3732411 8918636 Nhal_3624 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529034.1 3730546 R 472759 CDS YP_003529035.1 292493596 8918637 3732657..3734981 1 NC_013960.1 PFAM: glycosyl transferase group 1; KEGG: noc:Noc_2171 hypothetical protein; group 1 glycosyl transferase 3734981 8918637 Nhal_3625 Nitrosococcus halophilus Nc4 group 1 glycosyl transferase YP_003529035.1 3732657 D 472759 CDS YP_003529036.1 292493597 8918638 complement(3734978..3737098) 1 NC_013960.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: noc:Noc_2172 hypothetical protein; haloacid dehalogenase 3737098 8918638 Nhal_3626 Nitrosococcus halophilus Nc4 haloacid dehalogenase YP_003529036.1 3734978 R 472759 CDS YP_003529037.1 292493598 8918639 complement(3737124..3738335) 1 NC_013960.1 KEGG: noc:Noc_2174 hypothetical protein; hypothetical protein 3738335 8918639 Nhal_3627 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529037.1 3737124 R 472759 CDS YP_003529038.1 292493599 8918640 complement(3738343..3739110) 1 NC_013960.1 KEGG: noc:Noc_2175 hypothetical protein; hypothetical protein 3739110 8918640 Nhal_3628 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529038.1 3738343 R 472759 CDS YP_003529039.1 292493600 8918641 complement(3739136..3740452) 1 NC_013960.1 PFAM: glycosyl transferase family 2; KEGG: noc:Noc_2176 glycosyl transferase; family 2 glycosyl transferase 3740452 8918641 Nhal_3629 Nitrosococcus halophilus Nc4 family 2 glycosyl transferase YP_003529039.1 3739136 R 472759 CDS YP_003529040.1 292493601 8918642 complement(3740488..3741408) 1 NC_013960.1 TIGRFAM: rhamnosyltransferase; PFAM: glycosyl transferase family 2; KEGG: noc:Noc_2177 rhamnosyltransferase; rhamnosyltransferase 3741408 8918642 Nhal_3630 Nitrosococcus halophilus Nc4 rhamnosyltransferase YP_003529040.1 3740488 R 472759 CDS YP_003529041.1 292493602 8918643 complement(3741533..3745246) 1 NC_013960.1 PFAM: glycosyl transferase family 2; methyltransferase type 12; methyltransferase type 11; glycosyl transferase group 1; methionine biosynthesis MetW protein; KEGG: noc:Noc_2178 glycosyl transferase family protein; family 2 glycosyl transferase 3745246 8918643 Nhal_3631 Nitrosococcus halophilus Nc4 family 2 glycosyl transferase YP_003529041.1 3741533 R 472759 CDS YP_003529042.1 292493603 8918644 3745480..3746076 1 NC_013960.1 PFAM: methyltransferase type 11; KEGG: vei:Veis_0634 methyltransferase type 11; type 11 methyltransferase 3746076 8918644 Nhal_3632 Nitrosococcus halophilus Nc4 type 11 methyltransferase YP_003529042.1 3745480 D 472759 CDS YP_003529043.1 292493604 8918645 complement(3746200..3747099) 1 NC_013960.1 KEGG: noc:Noc_2180 hypothetical protein; hypothetical protein 3747099 8918645 Nhal_3633 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529043.1 3746200 R 472759 CDS YP_003529044.1 292493605 8918646 complement(3747112..3748341) 1 NC_013960.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_2181 ABC transporter ATPase; ABC transporter 3748341 8918646 Nhal_3634 Nitrosococcus halophilus Nc4 ABC transporter YP_003529044.1 3747112 R 472759 CDS YP_003529045.1 292493606 8918647 complement(3748426..3749259) 1 NC_013960.1 PFAM: ABC transporter; KEGG: noc:Noc_2182 ABC polysaccharide/polyol phosphate export systems, inner membrane subunit; ABC transporter 3749259 8918647 Nhal_3635 Nitrosococcus halophilus Nc4 ABC transporter YP_003529045.1 3748426 R 472759 CDS YP_003529046.1 292493607 8918648 complement(3749243..3749380) 1 NC_013960.1 hypothetical protein 3749380 8918648 Nhal_3636 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529046.1 3749243 R 472759 CDS YP_003529047.1 292493608 8918649 complement(3749377..3749583) 1 NC_013960.1 PFAM: protein of unknown function UPF0150; KEGG: hpa:HPAG1_0204 hypothetical protein; hypothetical protein 3749583 8918649 Nhal_3637 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529047.1 3749377 R 472759 CDS YP_003529048.1 292493609 8918650 3749817..3750011 1 NC_013960.1 KEGG: maq:Maqu_2253 hypothetical protein; hypothetical protein 3750011 8918650 Nhal_3638 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529048.1 3749817 D 472759 CDS YP_003529049.1 292493610 8918651 3750077..3750391 1 NC_013960.1 hypothetical protein 3750391 8918651 Nhal_3639 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529049.1 3750077 D 472759 CDS YP_003529050.1 292493611 8918652 3750504..3750632 1 NC_013960.1 hypothetical protein 3750632 8918652 Nhal_3640 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529050.1 3750504 D 472759 CDS YP_003529051.1 292493612 8918653 3750662..3751816 1 NC_013960.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0401 transposase; transposase, IS605 OrfB family 3751816 8918653 Nhal_3641 Nitrosococcus halophilus Nc4 transposase, IS605 OrfB family YP_003529051.1 3750662 D 472759 CDS YP_003529052.1 292493613 8918654 3752079..3752357 1 NC_013960.1 TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: CopG domain protein DNA-binding domain protein; protein of unknown function UPF0156; KEGG: bbt:BBta_4866 hypothetical protein; addiction module antidote protein 3752357 8918654 Nhal_3642 Nitrosococcus halophilus Nc4 addiction module antidote protein YP_003529052.1 3752079 D 472759 CDS YP_003529053.1 292493614 8918655 3752379..3752666 1 NC_013960.1 PFAM: plasmid stabilization system; KEGG: rpc:RPC_2216 plasmid stabilization system protein; plasmid stabilization system 3752666 8918655 Nhal_3643 Nitrosococcus halophilus Nc4 plasmid stabilization system YP_003529053.1 3752379 D 472759 CDS YP_003529054.1 292493615 8918656 complement(3753133..3754095) 1 NC_013960.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: noc:Noc_0767 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 3754095 8918656 Nhal_3644 Nitrosococcus halophilus Nc4 PpiC-type peptidyl-prolyl cis-trans isomerase YP_003529054.1 3753133 R 472759 CDS YP_003529055.1 292493616 8918657 complement(3754733..3755347) 1 NC_013960.1 KEGG: noc:Noc_0765 hypothetical protein; hypothetical protein 3755347 8918657 Nhal_3645 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529055.1 3754733 R 472759 CDS YP_003529056.1 292493617 8918658 complement(3755644..3757062) 1 NC_013960.1 KEGG: noc:Noc_0764 hypothetical protein; hypothetical protein 3757062 8918658 Nhal_3646 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529056.1 3755644 R 472759 CDS YP_003529057.1 292493618 8918659 complement(3757205..3757642) 1 NC_013960.1 KEGG: noc:Noc_0763 hypothetical protein; hypothetical protein 3757642 8918659 Nhal_3647 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529057.1 3757205 R 472759 CDS YP_003529058.1 292493619 8918660 complement(3757912..3760215) 1 NC_013960.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: noc:Noc_0761 general secretion pathway protein D; general secretion pathway protein D 3760215 8918660 Nhal_3648 Nitrosococcus halophilus Nc4 general secretion pathway protein D YP_003529058.1 3757912 R 472759 CDS YP_003529059.1 292493620 8918661 complement(3760413..3761012) 1 NC_013960.1 KEGG: noc:Noc_0760 hypothetical protein; hypothetical protein 3761012 8918661 Nhal_3649 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529059.1 3760413 R 472759 CDS YP_003529060.1 292493621 8918662 complement(3760993..3761598) 1 NC_013960.1 KEGG: noc:Noc_0759 general secretion pathway protein; general secretion pathway protein 3761598 8918662 Nhal_3650 Nitrosococcus halophilus Nc4 general secretion pathway protein YP_003529060.1 3760993 R 472759 CDS YP_003529061.1 292493622 8918663 complement(3761595..3762671) 1 NC_013960.1 PFAM: fimbrial assembly family protein; KEGG: noc:Noc_0758 general secretion pathway protein L; fimbrial assembly family protein 3762671 8918663 Nhal_3651 Nitrosococcus halophilus Nc4 fimbrial assembly family protein YP_003529061.1 3761595 R 472759 CDS YP_003529062.1 292493623 8918664 complement(3763077..3763961) 1 NC_013960.1 PFAM: general secretion pathway protein K; KEGG: noc:Noc_0757 general secretion pathway protein K; general secretion pathway protein K 3763961 8918664 Nhal_3652 Nitrosococcus halophilus Nc4 general secretion pathway protein K YP_003529062.1 3763077 R 472759 CDS YP_003529063.1 292493624 8918665 complement(3763974..3764693) 1 NC_013960.1 KEGG: noc:Noc_0756 general secretion pathway protein J; general secretion pathway protein J 3764693 8918665 Nhal_3653 Nitrosococcus halophilus Nc4 general secretion pathway protein J YP_003529063.1 3763974 R 472759 CDS YP_003529064.1 292493625 8918666 3764842..3767034 1 NC_013960.1 SMART: hypothetical protein; KEGG: noc:Noc_0755 hypothetical protein; hypothetical protein 3767034 8918666 Nhal_3654 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529064.1 3764842 D 472759 CDS YP_003529065.1 292493626 8918667 3767073..3768512 1 NC_013960.1 KEGG: noc:Noc_0754 hypothetical protein; hypothetical protein 3768512 8918667 Nhal_3655 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529065.1 3767073 D 472759 CDS YP_003529066.1 292493627 8918668 complement(3768632..3769030) 1 NC_013960.1 KEGG: noc:Noc_0753 hypothetical protein; hypothetical protein 3769030 8918668 Nhal_3656 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529066.1 3768632 R 472759 CDS YP_003529067.1 292493628 8918669 complement(3769023..3769724) 1 NC_013960.1 PFAM: glycosyl transferase family 2; KEGG: noc:Noc_0752 glycosyl transferase; family 2 glycosyl transferase 3769724 8918669 Nhal_3657 Nitrosococcus halophilus Nc4 family 2 glycosyl transferase YP_003529067.1 3769023 R 472759 CDS YP_003529068.1 292493629 8918670 complement(3769964..3770293) 1 NC_013960.1 PFAM: cytochrome C class I; KEGG: noc:Noc_0751 cytochrome c, class I; cytochrome C class I 3770293 8918670 Nhal_3658 Nitrosococcus halophilus Nc4 cytochrome C class I YP_003529068.1 3769964 R 472759 CDS YP_003529069.1 292493630 8918671 complement(3770636..3771727) 1 NC_013960.1 PFAM: glycosyl transferase group 1; KEGG: noc:Noc_0750 glycosyl transferase, group 1; group 1 glycosyl transferase 3771727 8918671 Nhal_3659 Nitrosococcus halophilus Nc4 group 1 glycosyl transferase YP_003529069.1 3770636 R 472759 CDS YP_003529070.1 292493631 8918672 complement(3771795..3775718) 1 NC_013960.1 PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: pfl:PFL_5493 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 3775718 8918672 Nhal_3660 Nitrosococcus halophilus Nc4 family 2 glycosyl transferase YP_003529070.1 3771795 R 472759 CDS YP_003529071.1 292493632 8918673 complement(3775937..3777022) 1 NC_013960.1 KEGG: pat:Patl_3219 hypothetical protein; hypothetical protein 3777022 8918673 Nhal_3661 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529071.1 3775937 R 472759 CDS YP_003529072.1 292493633 8918675 complement(3777527..3777865) 1 NC_013960.1 hypothetical protein 3777865 8918675 Nhal_3663 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529072.1 3777527 R 472759 CDS YP_003529073.1 292493634 8918676 3778231..3778332 1 NC_013960.1 hypothetical protein 3778332 8918676 Nhal_3664 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529073.1 3778231 D 472759 CDS YP_003529074.1 292493635 8918678 3778692..3779864 1 NC_013960.1 KEGG: conserved hypothetical protein; hypothetical protein 3779864 8918678 Nhal_3666 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529074.1 3778692 D 472759 CDS YP_003529075.1 292493636 8918680 complement(3780279..3780404) 1 NC_013960.1 hypothetical protein 3780404 8918680 Nhal_3668 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529075.1 3780279 R 472759 CDS YP_003529076.1 292493637 8918681 complement(3780413..3781138) 1 NC_013960.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dol:Dole_1285 ABC transporter-related protein; ABC transporter 3781138 8918681 Nhal_3669 Nitrosococcus halophilus Nc4 ABC transporter YP_003529076.1 3780413 R 472759 CDS YP_003529077.1 292493638 8918682 complement(3781135..3781917) 1 NC_013960.1 PFAM: ABC transporter; KEGG: dol:Dole_1284 ABC-2 type transporter; ABC transporter 3781917 8918682 Nhal_3670 Nitrosococcus halophilus Nc4 ABC transporter YP_003529077.1 3781135 R 472759 CDS YP_003529078.1 292493639 8918683 complement(3782330..3783550) 1 NC_013960.1 PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_2583 glycosyl transferase family 2; family 2 glycosyl transferase 3783550 8918683 Nhal_3671 Nitrosococcus halophilus Nc4 family 2 glycosyl transferase YP_003529078.1 3782330 R 472759 CDS YP_003529079.1 292493640 8918684 complement(3783564..3784505) 1 NC_013960.1 PFAM: glycosyl transferase family 2; KEGG: maq:Maqu_2635 glycosyl transferase; family 2 glycosyl transferase 3784505 8918684 Nhal_3672 Nitrosococcus halophilus Nc4 family 2 glycosyl transferase YP_003529079.1 3783564 R 472759 CDS YP_003529080.1 292493641 8918685 complement(3784540..3786288) 1 NC_013960.1 PFAM: methyltransferase type 12; KEGG: maq:Maqu_2635 glycosyl transferase; type 12 methyltransferase 3786288 8918685 Nhal_3673 Nitrosococcus halophilus Nc4 type 12 methyltransferase YP_003529080.1 3784540 R 472759 CDS YP_003529081.1 292493642 8918686 complement(3786285..3786977) 1 NC_013960.1 KEGG: maq:Maqu_2636 hypothetical protein; hypothetical protein 3786977 8918686 Nhal_3674 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529081.1 3786285 R 472759 CDS YP_003529082.1 292493643 8918687 complement(3786982..3787707) 1 NC_013960.1 PFAM: methyltransferase type 12; KEGG: cps:CPS_2928 hypothetical protein; type 12 methyltransferase 3787707 8918687 Nhal_3675 Nitrosococcus halophilus Nc4 type 12 methyltransferase YP_003529082.1 3786982 R 472759 CDS YP_003529083.1 292493644 8918688 complement(3787676..3788122) 1 NC_013960.1 KEGG: dac:Daci_1310 hypothetical protein; hypothetical protein 3788122 8918688 Nhal_3676 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529083.1 3787676 R 472759 CDS YP_003529084.1 292493645 8918689 complement(3788183..3788635) 1 NC_013960.1 KEGG: vei:Veis_0677 hypothetical protein; hypothetical protein 3788635 8918689 Nhal_3677 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529084.1 3788183 R 472759 CDS YP_003529085.1 292493646 8918690 complement(3788640..3789566) 1 NC_013960.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: aav:Aave_4147 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 3789566 8918690 Nhal_3678 Nitrosococcus halophilus Nc4 PpiC-type peptidyl-prolyl cis-trans isomerase YP_003529085.1 3788640 R 472759 CDS YP_003529086.1 292493647 8918691 complement(3789688..3791589) 1 NC_013960.1 KEGG: aav:Aave_4148 hypothetical protein; hypothetical protein 3791589 8918691 Nhal_3679 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529086.1 3789688 R 472759 CDS YP_003529087.1 292493648 8918692 complement(3791947..3792147) 1 NC_013960.1 hypothetical protein 3792147 8918692 Nhal_3680 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529087.1 3791947 R 472759 CDS YP_003529088.1 292493649 8918693 3792349..3793803 1 NC_013960.1 PFAM: glycine cleavage system P-protein; KEGG: noc:Noc_2547 glycine dehydrogenase subunit 2; glycine dehydrogenase 3793803 8918693 Nhal_3681 Nitrosococcus halophilus Nc4 glycine dehydrogenase YP_003529088.1 3792349 D 472759 CDS YP_003529089.1 292493650 8918694 3793800..3794165 1 NC_013960.1 PFAM: diacylglycerol kinase; KEGG: tgr:Tgr7_2754 diacylglycerol kinase; diacylglycerol kinase 3794165 8918694 Nhal_3682 Nitrosococcus halophilus Nc4 diacylglycerol kinase YP_003529089.1 3793800 D 472759 CDS YP_003529090.1 292493651 8918695 3794601..3795533 1 NC_013960.1 PFAM: PfkB domain protein; KEGG: noc:Noc_2548 carbohydrate kinase, PfkB; PfkB domain-containing protein 3795533 8918695 Nhal_3683 Nitrosococcus halophilus Nc4 PfkB domain-containing protein YP_003529090.1 3794601 D 472759 CDS YP_003529091.1 292493652 8918696 complement(3795521..3797605) 1 NC_013960.1 PFAM: protein of unknown function DUF255; KEGG: noc:Noc_2549 hypothetical protein; hypothetical protein 3797605 8918696 Nhal_3684 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529091.1 3795521 R 472759 CDS YP_003529092.1 292493653 8918697 3797763..3798728 1 NC_013960.1 TIGRFAM: pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: noc:Noc_2550 pseudouridine synthase, RluD; pseudouridine synthase 3798728 8918697 Nhal_3685 Nitrosococcus halophilus Nc4 pseudouridine synthase YP_003529092.1 3797763 D 472759 CDS YP_003529093.1 292493654 8918698 complement(3798889..3799887) 1 NC_013960.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: noc:Noc_2551 zinc-containing alcohol dehydrogenase superfamily protein; alcohol dehydrogenase zinc-binding domain-containing protein 3799887 8918698 Nhal_3686 Nitrosococcus halophilus Nc4 alcohol dehydrogenase zinc-binding domain-containing protein YP_003529093.1 3798889 R 472759 CDS YP_003529094.1 292493655 8918699 complement(3799892..3801331) 1 NC_013960.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_2552 NADH dehydrogenase subunit N; proton-translocating NADH-quinone oxidoreductase subunit N 3801331 8918699 Nhal_3687 Nitrosococcus halophilus Nc4 proton-translocating NADH-quinone oxidoreductase subunit N YP_003529094.1 3799892 R 472759 CDS YP_003529095.1 292493656 8918700 complement(3801382..3802896) 1 NC_013960.1 KEGG: noc:Noc_2553 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 3802896 8918700 Nhal_3688 Nitrosococcus halophilus Nc4 proton-translocating NADH-quinone oxidoreductase subunit M YP_003529095.1 3801382 R 472759 CDS YP_003529096.1 292493657 8918701 complement(3802900..3804852) 1 NC_013960.1 KEGG: noc:Noc_2554 NADH-plastoquinone oxidoreductase, chain 5; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; proton-translocating NADH-quinone oxidoreductase subunit L 3804852 8918701 Nhal_3689 Nitrosococcus halophilus Nc4 proton-translocating NADH-quinone oxidoreductase subunit L YP_003529096.1 3802900 R 472759 CDS YP_003529097.1 292493658 8918702 complement(3804858..3805163) 1 NC_013960.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: noc:Noc_2555 NADH dehydrogenase subunit K; NADH-ubiquinone oxidoreductase chain 4L 3805163 8918702 Nhal_3690 Nitrosococcus halophilus Nc4 NADH-ubiquinone oxidoreductase chain 4L YP_003529097.1 3804858 R 472759 CDS YP_003529098.1 292493659 8918703 complement(3805171..3805776) 1 NC_013960.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: noc:Noc_2556 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 3805776 8918703 Nhal_3691 Nitrosococcus halophilus Nc4 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_003529098.1 3805171 R 472759 CDS YP_003529099.1 292493660 8918704 complement(3805800..3806288) 1 NC_013960.1 KEGG: noc:Noc_2557 NADH dehydrogenase subunit I; TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; NADH-quinone oxidoreductase subunit I 3806288 8918704 Nhal_3692 Nitrosococcus halophilus Nc4 NADH-quinone oxidoreductase subunit I YP_003529099.1 3805800 R 472759 CDS YP_003529100.1 292493661 8918705 complement(3806301..3807314) 1 NC_013960.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: noc:Noc_2558 respiratory-chain NADH dehydrogenase, subunit 1; NADH dehydrogenase (quinone) 3807314 8918705 Nhal_3693 Nitrosococcus halophilus Nc4 NADH dehydrogenase (quinone) YP_003529100.1 3806301 R 472759 CDS YP_003529101.1 292493662 8918706 complement(3807319..3809706) 1 NC_013960.1 TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: molybdopterin oxidoreductase; ferredoxin; KEGG: noc:Noc_2559 NADH dehydrogenase subunit G; NADH-quinone oxidoreductase subunit G 3809706 8918706 Nhal_3694 Nitrosococcus halophilus Nc4 NADH-quinone oxidoreductase subunit G YP_003529101.1 3807319 R 472759 CDS YP_003529102.1 292493663 8918707 complement(3809722..3811005) 1 NC_013960.1 KEGG: noc:Noc_2560 NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH-quinone oxidoreductase subunit F 3811005 8918707 Nhal_3695 Nitrosococcus halophilus Nc4 NADH-quinone oxidoreductase subunit F YP_003529102.1 3809722 R 472759 CDS YP_003529103.1 292493664 8918708 complement(3811002..3811532) 1 NC_013960.1 TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: noc:Noc_2561 NADH dehydrogenase (ubiquinone), 24 kDa subunit; NADH-quinone oxidoreductase subunit E 3811532 8918708 Nhal_3696 Nitrosococcus halophilus Nc4 NADH-quinone oxidoreductase subunit E YP_003529103.1 3811002 R 472759 CDS YP_003529104.1 292493665 8918709 complement(3811529..3812782) 1 NC_013960.1 KEGG: noc:Noc_2562 NADH dehydrogenase subunit D; TIGRFAM: NADH dehydrogenase I, D subunit; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; NADH dehydrogenase I subunit D 3812782 8918709 Nhal_3697 Nitrosococcus halophilus Nc4 NADH dehydrogenase I subunit D YP_003529104.1 3811529 R 472759 CDS YP_003529105.1 292493666 8918710 complement(3812775..3813470) 1 NC_013960.1 KEGG: noc:Noc_2563 NADH (or F420H2) dehydrogenase, subunit C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; NADH (or F420H2) dehydrogenase subunit C 3813470 8918710 Nhal_3698 Nitrosococcus halophilus Nc4 NADH (or F420H2) dehydrogenase subunit C YP_003529105.1 3812775 R 472759 CDS YP_003529106.1 292493667 8918711 complement(3813490..3813966) 1 NC_013960.1 KEGG: noc:Noc_2564 NADH dehydrogenase subunit B; TIGRFAM: NADH-quinone oxidoreductase subunit beta; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; NADH-quinone oxidoreductase subunit beta 3813966 8918711 Nhal_3699 Nitrosococcus halophilus Nc4 NADH-quinone oxidoreductase subunit beta YP_003529106.1 3813490 R 472759 CDS YP_003529107.1 292493668 8918712 complement(3813957..3814313) 1 NC_013960.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: noc:Noc_2565 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 3814313 8918712 Nhal_3700 Nitrosococcus halophilus Nc4 NADH-ubiquinone/plastoquinone oxidoreductase chain 3 YP_003529107.1 3813957 R 472759 CDS YP_003529108.1 292493669 8918714 complement(3814518..3814973) 1 NC_013960.1 TIGRFAM: preprotein translocase subunit SecG; PFAM: Preprotein translocase SecG subunit; KEGG: abo:ABO_0326 protein-export membrane protein; preprotein translocase subunit SecG 3814973 8918714 Nhal_3701 Nitrosococcus halophilus Nc4 preprotein translocase subunit SecG YP_003529108.1 3814518 R 472759 CDS YP_003529109.1 292493670 8918715 complement(3814983..3815735) 1 NC_013960.1 TIGRFAM: triosephosphate isomerase; PFAM: triosephosphate isomerase; KEGG: noc:Noc_2566 triosephosphate isomerase; triosephosphate isomerase 3815735 8918715 Nhal_3702 Nitrosococcus halophilus Nc4 triosephosphate isomerase YP_003529109.1 3814983 R 472759 CDS YP_003529110.1 292493671 8918716 complement(3815841..3817187) 1 NC_013960.1 KEGG: noc:Noc_2567 phosphoglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucosamine mutase 3817187 8918716 Nhal_3703 Nitrosococcus halophilus Nc4 phosphoglucosamine mutase YP_003529110.1 3815841 R 472759 CDS YP_003529111.1 292493672 8918717 complement(3817189..3818061) 1 NC_013960.1 KEGG: noc:Noc_2568 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase 3818061 8918717 Nhal_3704 Nitrosococcus halophilus Nc4 dihydropteroate synthase YP_003529111.1 3817189 R 472759 CDS YP_003529112.1 292493673 8918718 3818405..3818626 1 NC_013960.1 KEGG: noc:Noc_3005 hypothetical protein; hypothetical protein 3818626 8918718 Nhal_3705 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529112.1 3818405 D 472759 CDS YP_003529113.1 292493674 8918719 complement(3818657..3820576) 1 NC_013960.1 KEGG: noc:Noc_2569 peptidase M41, FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; ATP-dependent metalloprotease FtsH 3820576 8918719 Nhal_3706 Nitrosococcus halophilus Nc4 ATP-dependent metalloprotease FtsH YP_003529113.1 3818657 R 472759 CDS YP_003529114.1 292493675 8918720 complement(3820654..3821292) 1 NC_013960.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: noc:Noc_2570 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ 3821292 8918720 Nhal_3707 Nitrosococcus halophilus Nc4 ribosomal RNA methyltransferase RrmJ/FtsJ YP_003529114.1 3820654 R 472759 CDS YP_003529115.1 292493676 8918721 complement(3821530..3822006) 1 NC_013960.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: noc:Noc_2571 transcription elongation factor GreA; transcription elongation factor GreA 3822006 8918721 Nhal_3708 Nitrosococcus halophilus Nc4 transcription elongation factor GreA YP_003529115.1 3821530 R 472759 CDS YP_003529116.1 292493677 8918722 complement(3822003..3825224) 1 NC_013960.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: carbamoyl-phosphate synthase L chain ATP-binding; protein of unknown function DUF201; phosphoribosylglycinamide synthetase; MGS domain protein; carbamoyl-phosphate synthetase large chain oligomerisation; carbamoyl-phosphate synthetase large chain domain protein; KEGG: noc:Noc_2572 carbamoyl-phosphate synthase, large subunit, glutamine-dependent; carbamoyl-phosphate synthase, large subunit 3825224 8918722 Nhal_3709 Nitrosococcus halophilus Nc4 carbamoyl-phosphate synthase, large subunit YP_003529116.1 3822003 R 472759 CDS YP_003529117.1 292493678 8918723 complement(3825305..3826492) 1 NC_013960.1 TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; KEGG: noc:Noc_2573 carbamoyl-phosphate synthase, small subunit; carbamoyl-phosphate synthase, small subunit 3826492 8918723 Nhal_3710 Nitrosococcus halophilus Nc4 carbamoyl-phosphate synthase, small subunit YP_003529117.1 3825305 R 472759 CDS YP_003529118.1 292493679 8918724 3826580..3827674 1 NC_013960.1 PFAM: delta-aminolevulinic acid dehydratase; KEGG: noc:Noc_2574 delta-aminolevulinic acid dehydratase; porphobilinogen synthase 3827674 8918724 Nhal_3711 Nitrosococcus halophilus Nc4 porphobilinogen synthase YP_003529118.1 3826580 D 472759 CDS YP_003529119.1 292493680 8918725 3827762..3828589 1 NC_013960.1 TIGRFAM: shikimate 5-dehydrogenase; PFAM: shikimate dehydrogenase substrate binding domain protein; shikimate/quinate 5-dehydrogenase; KEGG: noc:Noc_2575 quinate/shikimate 5-dehydrogenase; shikimate 5-dehydrogenase 3828589 8918725 Nhal_3712 Nitrosococcus halophilus Nc4 shikimate 5-dehydrogenase YP_003529119.1 3827762 D 472759 CDS YP_003529120.1 292493681 8918727 complement(3828820..3829131) 1 NC_013960.1 PFAM: protein of unknown function DUF710; KEGG: noc:Noc_2576 hypothetical protein; hypothetical protein 3829131 8918727 Nhal_3713 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529120.1 3828820 R 472759 CDS YP_003529121.1 292493682 8918728 complement(3829128..3829337) 1 NC_013960.1 KEGG: noc:Noc_2577 hypothetical protein; hypothetical protein 3829337 8918728 Nhal_3714 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529121.1 3829128 R 472759 CDS YP_003529122.1 292493683 8918729 3829472..3830008 1 NC_013960.1 KEGG: noc:Noc_2578 hypothetical protein; hypothetical protein 3830008 8918729 Nhal_3715 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529122.1 3829472 D 472759 CDS YP_003529123.1 292493684 8918730 3830034..3831365 1 NC_013960.1 PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: noc:Noc_2579 peptidase M24; peptidase M24 3831365 8918730 Nhal_3716 Nitrosococcus halophilus Nc4 peptidase M24 YP_003529123.1 3830034 D 472759 CDS YP_003529124.1 292493685 8918731 3831362..3832588 1 NC_013960.1 TIGRFAM: 2-polyprenyl-6-methoxyphenol 4-hydroxylase; Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: noc:Noc_2580 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; 2-polyprenyl-6-methoxyphenol 4-hydroxylase 3832588 8918731 Nhal_3717 Nitrosococcus halophilus Nc4 2-polyprenyl-6-methoxyphenol 4-hydroxylase YP_003529124.1 3831362 D 472759 CDS YP_003529125.1 292493686 8918732 3832585..3833832 1 NC_013960.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; KEGG: noc:Noc_2581 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 3833832 8918732 Nhal_3718 Nitrosococcus halophilus Nc4 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase YP_003529125.1 3832585 D 472759 CDS YP_003529126.1 292493687 8918733 complement(3833858..3835129) 1 NC_013960.1 PFAM: DEAD/DEAH box helicase; helicase domain protein; SMART: DEAD-like helicase ; helicase; KEGG: noc:Noc_2582 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase 3835129 8918733 Nhal_3719 Nitrosococcus halophilus Nc4 DEAD/DEAH box helicase YP_003529126.1 3833858 R 472759 CDS YP_003529127.1 292493688 8918734 3835363..3835689 1 NC_013960.1 TIGRFAM: thioredoxin; PFAM: thioredoxin domain; KEGG: noc:Noc_2583 thioredoxin; thioredoxin 3835689 8918734 Nhal_3720 Nitrosococcus halophilus Nc4 thioredoxin YP_003529127.1 3835363 D 472759 CDS YP_003529128.1 292493689 8918735 3835748..3836218 1 NC_013960.1 PFAM: 17 kDa surface antigen; KEGG: noc:Noc_2584 surface antigen protein; 17 kDa surface antigen 3836218 8918735 Nhal_3721 Nitrosococcus halophilus Nc4 17 kDa surface antigen YP_003529128.1 3835748 D 472759 CDS YP_003529129.1 292493690 8918736 3836314..3836676 1 NC_013960.1 KEGG: mno:Mnod_2293 hypothetical protein; hypothetical protein 3836676 8918736 Nhal_3722 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529129.1 3836314 D 472759 CDS YP_003529130.1 292493691 8918737 complement(3836699..3837994) 1 NC_013960.1 KEGG: noc:Noc_2585 adenylosuccinate synthase; TIGRFAM: adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; SMART: adenylosuccinate synthetase; adenylosuccinate synthetase 3837994 8918737 Nhal_3723 Nitrosococcus halophilus Nc4 adenylosuccinate synthetase YP_003529130.1 3836699 R 472759 CDS YP_003529131.1 292493692 8918738 complement(3837987..3839180) 1 NC_013960.1 TIGRFAM: histidyl-tRNA synthetase 2; PFAM: tRNA synthetase class II (G H P and S); KEGG: noc:Noc_2586 ATP phosphoribosyltransferase regulatory subunit; histidyl-tRNA synthetase 2 3839180 8918738 Nhal_3724 Nitrosococcus halophilus Nc4 histidyl-tRNA synthetase 2 YP_003529131.1 3837987 R 472759 CDS YP_003529132.1 292493693 8918739 complement(3839249..3840163) 1 NC_013960.1 KEGG: noc:Noc_2587 HflC-like protein; TIGRFAM: HflC protein; PFAM: hypothetical protein; SMART: hypothetical protein; HflC protein 3840163 8918739 Nhal_3725 Nitrosococcus halophilus Nc4 HflC protein YP_003529132.1 3839249 R 472759 CDS YP_003529133.1 292493694 8918740 complement(3840163..3841410) 1 NC_013960.1 KEGG: noc:Noc_2588 HflK-like protein; TIGRFAM: HflK protein; PFAM: hypothetical protein; SMART: hypothetical protein; HflK protein 3841410 8918740 Nhal_3726 Nitrosococcus halophilus Nc4 HflK protein YP_003529133.1 3840163 R 472759 CDS YP_003529134.1 292493695 8918741 complement(3841541..3842692) 1 NC_013960.1 TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: noc:Noc_2589 GTP-binding protein, HSR1-related; GTP-binding proten HflX 3842692 8918741 Nhal_3727 Nitrosococcus halophilus Nc4 GTP-binding proten HflX YP_003529134.1 3841541 R 472759 CDS YP_003529135.1 292493696 8918742 complement(3842740..3843006) 1 NC_013960.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: noc:Noc_2590 host factor Hfq; RNA chaperone Hfq 3843006 8918742 Nhal_3728 Nitrosococcus halophilus Nc4 RNA chaperone Hfq YP_003529135.1 3842740 R 472759 CDS YP_003529136.1 292493697 8918743 complement(3843359..3844294) 1 NC_013960.1 KEGG: noc:Noc_2591 tRNA isopentenyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase 3844294 8918743 Nhal_3729 Nitrosococcus halophilus Nc4 tRNA delta(2)-isopentenylpyrophosphate transferase YP_003529136.1 3843359 R 472759 CDS YP_003529137.1 292493698 8918744 complement(3844362..3845618) 1 NC_013960.1 KEGG: noc:Noc_2592 transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; ribonuclease B OB region domain; Rho termination factor domain protein; Rho termination factor RNA-binding; SMART: Cold shock protein; ATPase AAA; transcription termination factor Rho 3845618 8918744 Nhal_3730 Nitrosococcus halophilus Nc4 transcription termination factor Rho YP_003529137.1 3844362 R 472759 CDS YP_003529138.1 292493699 8918747 3847234..3848829 1 NC_013960.1 KEGG: noc:Noc_2593 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III subunits gamma and tau; PFAM: ATPase AAA central domain protein; SMART: ATPase AAA; DNA polymerase III subunits gamma and tau 3848829 8918747 Nhal_3731 Nitrosococcus halophilus Nc4 DNA polymerase III subunits gamma and tau YP_003529138.1 3847234 D 472759 CDS YP_003529139.1 292493700 8918748 3848878..3849198 1 NC_013960.1 PFAM: conserved hypothetical protein; KEGG: noc:Noc_2594 hypothetical protein; hypothetical protein 3849198 8918748 Nhal_3732 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529139.1 3848878 D 472759 CDS YP_003529140.1 292493701 8918749 3849239..3849838 1 NC_013960.1 KEGG: noc:Noc_2595 RecR protein; TIGRFAM: recombination protein RecR; PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; SMART: Toprim sub domain protein; recombination protein RecR 3849838 8918749 Nhal_3733 Nitrosococcus halophilus Nc4 recombination protein RecR YP_003529140.1 3849239 D 472759 CDS YP_003529141.1 292493702 8918750 3849956..3851179 1 NC_013960.1 PFAM: metal-dependent hydrolase HDOD; EAL domain protein; KEGG: tgr:Tgr7_0322 signal transduction protein; metal-dependent hydrolase HDOD 3851179 8918750 Nhal_3734 Nitrosococcus halophilus Nc4 metal-dependent hydrolase HDOD YP_003529141.1 3849956 D 472759 CDS YP_003529142.1 292493703 8918751 3851240..3851965 1 NC_013960.1 KEGG: noc:Noc_2596 leucyl/phenylalanyl-tRNA--protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase; leucyl/phenylalanyl-tRNA/protein transferase 3851965 8918751 Nhal_3735 Nitrosococcus halophilus Nc4 leucyl/phenylalanyl-tRNA/protein transferase YP_003529142.1 3851240 D 472759 CDS YP_003529143.1 292493704 8918752 3852192..3852911 1 NC_013960.1 PFAM: Arginine-tRNA-protein transferase domain protein; KEGG: noc:Noc_2597 arginyl-tRNA-protein transferase; arginyltransferase 3852911 8918752 Nhal_3736 Nitrosococcus halophilus Nc4 arginyltransferase YP_003529143.1 3852192 D 472759 CDS YP_003529144.1 292493705 8918753 3852964..3853182 1 NC_013960.1 KEGG: noc:Noc_2598 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; SMART: RNA binding S1 domain protein; translation initiation factor IF-1 3853182 8918753 Nhal_3737 Nitrosococcus halophilus Nc4 translation initiation factor IF-1 YP_003529144.1 3852964 D 472759 CDS YP_003529145.1 292493706 8918754 complement(3853235..3853351) 1 NC_013960.1 hypothetical protein 3853351 8918754 Nhal_3738 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529145.1 3853235 R 472759 CDS YP_003529146.1 292493707 8918755 complement(3853327..3853815) 1 NC_013960.1 PFAM: disulfide bond formation protein DsbB; KEGG: noc:Noc_2599 disulphide bond formation protein DsbB; disulfide bond formation protein DsbB 3853815 8918755 Nhal_3739 Nitrosococcus halophilus Nc4 disulfide bond formation protein DsbB YP_003529146.1 3853327 R 472759 CDS YP_003529147.1 292493708 8918756 3854061..3854585 1 NC_013960.1 PFAM: protein of unknown function DUF1451; KEGG: noc:Noc_2600 hypothetical protein; hypothetical protein 3854585 8918756 Nhal_3740 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529147.1 3854061 D 472759 CDS YP_003529148.1 292493709 8918757 complement(3854777..3856123) 1 NC_013960.1 KEGG: noc:Noc_2601 hypothetical protein; hypothetical protein 3856123 8918757 Nhal_3741 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529148.1 3854777 R 472759 CDS YP_003529149.1 292493710 8918759 complement(3857204..3857632) 1 NC_013960.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: noc:Noc_2603 cytidine/deoxycytidylate deaminase, zinc-binding region; CMP/dCMP deaminase zinc-binding protein 3857632 8918759 Nhal_3743 Nitrosococcus halophilus Nc4 CMP/dCMP deaminase zinc-binding protein YP_003529149.1 3857204 R 472759 CDS YP_003529150.1 292493711 8918761 complement(3858651..3858779) 1 NC_013960.1 hypothetical protein 3858779 8918761 Nhal_3745 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529150.1 3858651 R 472759 CDS YP_003529151.1 292493712 8918763 3859624..3859770 1 NC_013960.1 hypothetical protein 3859770 8918763 Nhal_3747 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529151.1 3859624 D 472759 CDS YP_003529152.1 292493713 8918765 complement(3861172..3862107) 1 NC_013960.1 PFAM: Domain of unknown function DUF1814; KEGG: dol:Dole_3139 hypothetical protein; hypothetical protein 3862107 8918765 Nhal_3749 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529152.1 3861172 R 472759 CDS YP_003529153.1 292493714 8918766 complement(3862104..3862727) 1 NC_013960.1 KEGG: dol:Dole_3138 hypothetical protein; hypothetical protein 3862727 8918766 Nhal_3750 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529153.1 3862104 R 472759 CDS YP_003529154.1 292493715 8918767 3863480..3863764 1 NC_013960.1 KEGG: geo:Geob_1722 transcriptional regulator, XRE family; hypothetical protein 3863764 8918767 Nhal_3751 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529154.1 3863480 D 472759 CDS YP_003529155.1 292493716 8918768 complement(3864009..3865583) 1 NC_013960.1 TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: GMP synthase domain protein; ExsB family protein; glutamine amidotransferase class-I; KEGG: noc:Noc_0614 bifunctional GMP synthase/glutamine amidotransferase protein; GMP synthase, large subunit 3865583 8918768 Nhal_3752 Nitrosococcus halophilus Nc4 GMP synthase, large subunit YP_003529155.1 3864009 R 472759 CDS YP_003529156.1 292493717 8918769 complement(3865585..3867045) 1 NC_013960.1 KEGG: noc:Noc_0613 IMP dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; SMART: CBS domain containing protein; inosine-5'-monophosphate dehydrogenase 3867045 8918769 Nhal_3753 Nitrosococcus halophilus Nc4 inosine-5'-monophosphate dehydrogenase YP_003529156.1 3865585 R 472759 CDS YP_003529157.1 292493718 8918770 3867138..3868496 1 NC_013960.1 KEGG: noc:Noc_0612 exodeoxyribonuclease VII; TIGRFAM: exodeoxyribonuclease VII large subunit; PFAM: exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type; exodeoxyribonuclease VII large subunit 3868496 8918770 Nhal_3754 Nitrosococcus halophilus Nc4 exodeoxyribonuclease VII large subunit YP_003529157.1 3867138 D 472759 CDS YP_003529158.1 292493719 8918771 complement(3868906..3869037) 1 NC_013960.1 hypothetical protein 3869037 8918771 Nhal_3755 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529158.1 3868906 R 472759 CDS YP_003529159.1 292493720 8918772 complement(3869518..3870831) 1 NC_013960.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: noc:Noc_0611 TPR repeat-containing protein; hypothetical protein 3870831 8918772 Nhal_3756 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529159.1 3869518 R 472759 CDS YP_003529160.1 292493721 8918773 complement(3870828..3871490) 1 NC_013960.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: noc:Noc_0610 TonB-like protein; TonB family protein 3871490 8918773 Nhal_3757 Nitrosococcus halophilus Nc4 TonB family protein YP_003529160.1 3870828 R 472759 CDS YP_003529161.1 292493722 8918774 complement(3871487..3871897) 1 NC_013960.1 PFAM: biopolymertransporter ExbD/TolR; KEGG: noc:Noc_0609 biopolymer transporter ExbD/TolR; biopolymertransporter ExbD/TolR 3871897 8918774 Nhal_3758 Nitrosococcus halophilus Nc4 biopolymertransporter ExbD/TolR YP_003529161.1 3871487 R 472759 CDS YP_003529162.1 292493723 8918775 complement(3871903..3872427) 1 NC_013960.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: noc:Noc_0608 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 3872427 8918775 Nhal_3759 Nitrosococcus halophilus Nc4 MotA/TolQ/ExbB proton channel YP_003529162.1 3871903 R 472759 CDS YP_003529163.1 292493724 8918776 complement(3872393..3873826) 1 NC_013960.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: noc:Noc_0607 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 3873826 8918776 Nhal_3760 Nitrosococcus halophilus Nc4 MotA/TolQ/ExbB proton channel YP_003529163.1 3872393 R 472759 CDS YP_003529164.1 292493725 8918777 complement(3873823..3874599) 1 NC_013960.1 KEGG: noc:Noc_0606 hypothetical protein; hypothetical protein 3874599 8918777 Nhal_3761 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529164.1 3873823 R 472759 CDS YP_003529165.1 292493726 8918778 complement(3875214..3875714) 1 NC_013960.1 TIGRFAM: FmdB family transcriptional regulator; KEGG: ppd:Ppro_0721 FmdB family regulatory protein; FmdB family transcriptional regulator 3875714 8918778 Nhal_3762 Nitrosococcus halophilus Nc4 FmdB family transcriptional regulator YP_003529165.1 3875214 R 472759 CDS YP_003529166.1 292493727 8918779 complement(3875807..3875971) 1 NC_013960.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: noc:Noc_0605 rubredoxin-type Fe(Cys)4 protein; Rubredoxin-type Fe(Cys)4 protein 3875971 8918779 Nhal_3763 Nitrosococcus halophilus Nc4 Rubredoxin-type Fe(Cys)4 protein YP_003529166.1 3875807 R 472759 CDS YP_003529167.1 292493728 8918780 3876123..3876776 1 NC_013960.1 KEGG: noc:Noc_0604 thiamine-phosphate diphosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 3876776 8918780 Nhal_3764 Nitrosococcus halophilus Nc4 thiamine-phosphate pyrophosphorylase YP_003529167.1 3876123 D 472759 CDS YP_003529168.1 292493729 8918781 3876818..3877681 1 NC_013960.1 KEGG: noc:Noc_0603 thioredoxin domain-containing protein; TIGRFAM: thioredoxin; PFAM: thioredoxin domain; SMART: hypothetical protein; thioredoxin 3877681 8918781 Nhal_3765 Nitrosococcus halophilus Nc4 thioredoxin YP_003529168.1 3876818 D 472759 CDS YP_003529169.1 292493730 8918782 3877747..3879438 1 NC_013960.1 PFAM: MscS Mechanosensitive ion channel; KEGG: noc:Noc_0602 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS 3879438 8918782 Nhal_3766 Nitrosococcus halophilus Nc4 mechanosensitive ion channel MscS YP_003529169.1 3877747 D 472759 CDS YP_003529170.1 292493731 8918783 3879693..3880979 1 NC_013960.1 TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: noc:Noc_0600 glutamate-1-semialdehyde-2,1-aminomutase; glutamate-1-semialdehyde-2,1-aminomutase 3880979 8918783 Nhal_3767 Nitrosococcus halophilus Nc4 glutamate-1-semialdehyde-2,1-aminomutase YP_003529170.1 3879693 D 472759 CDS YP_003529171.1 292493732 8918784 3881070..3881987 1 NC_013960.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: mca:MCA1822 carbon-nitrogen family hydrolase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3881987 8918784 Nhal_3768 Nitrosococcus halophilus Nc4 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_003529171.1 3881070 D 472759 CDS YP_003529172.1 292493733 8918785 3882036..3884183 1 NC_013960.1 PFAM: UvrD/REP helicase; KEGG: noc:Noc_0599 DNA-dependent helicase II; UvrD/REP helicase 3884183 8918785 Nhal_3769 Nitrosococcus halophilus Nc4 UvrD/REP helicase YP_003529172.1 3882036 D 472759 CDS YP_003529173.1 292493734 8918786 3884262..3885374 1 NC_013960.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: noc:Noc_0598 TRAP dicarboxylate transporter-DctP subunit; TRAP dicarboxylate transporter subunit DctP 3885374 8918786 Nhal_3770 Nitrosococcus halophilus Nc4 TRAP dicarboxylate transporter subunit DctP YP_003529173.1 3884262 D 472759 CDS YP_003529174.1 292493735 8918787 complement(3885615..3886202) 1 NC_013960.1 PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: noc:Noc_0597 Sel1 repeat-containing protein; Sel1 domain-containing protein repeat-containing protein 3886202 8918787 Nhal_3771 Nitrosococcus halophilus Nc4 Sel1 domain-containing protein repeat-containing protein YP_003529174.1 3885615 R 472759 CDS YP_003529175.1 292493736 8918788 3886545..3886709 1 NC_013960.1 hypothetical protein 3886709 8918788 Nhal_3772 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529175.1 3886545 D 472759 CDS YP_003529176.1 292493737 8918789 3886717..3887523 1 NC_013960.1 KEGG: noc:Noc_0596 hypothetical protein; hypothetical protein 3887523 8918789 Nhal_3773 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529176.1 3886717 D 472759 CDS YP_003529177.1 292493738 8918790 3887909..3888805 1 NC_013960.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: noc:Noc_0595 cation efflux protein; cation diffusion facilitator family transporter 3888805 8918790 Nhal_3774 Nitrosococcus halophilus Nc4 cation diffusion facilitator family transporter YP_003529177.1 3887909 D 472759 CDS YP_003529178.1 292493739 8918791 3888968..3889285 1 NC_013960.1 KEGG: gur:Gura_2512 hypothetical protein; hypothetical protein 3889285 8918791 Nhal_3775 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529178.1 3888968 D 472759 CDS YP_003529179.1 292493740 8918792 3889435..3890121 1 NC_013960.1 PFAM: metallophosphoesterase; KEGG: noc:Noc_0594 metallophosphoesterase; metallophosphoesterase 3890121 8918792 Nhal_3776 Nitrosococcus halophilus Nc4 metallophosphoesterase YP_003529179.1 3889435 D 472759 CDS YP_003529180.1 292493741 8918793 complement(3890189..3891046) 1 NC_013960.1 PFAM: rhodanese; SMART: Rhodanese domain protein; KEGG: noc:Noc_0593 3-mercaptopyruvate sulfurtransferase; rhodanese 3891046 8918793 Nhal_3777 Nitrosococcus halophilus Nc4 rhodanese YP_003529180.1 3890189 R 472759 CDS YP_003529181.1 292493742 8918794 complement(3891138..3891767) 1 NC_013960.1 KEGG: cja:CJA_0864 PEP-Cterm exosortase interaction domain protein; hypothetical protein 3891767 8918794 Nhal_3778 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529181.1 3891138 R 472759 CDS YP_003529182.1 292493743 8918795 3892030..3892614 1 NC_013960.1 PFAM: protein of unknown function DUF785; KEGG: noc:Noc_0580 hypothetical protein; hypothetical protein 3892614 8918795 Nhal_3779 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529182.1 3892030 D 472759 CDS YP_003529183.1 292493744 8918796 complement(3892661..3893221) 1 NC_013960.1 hypothetical protein 3893221 8918796 Nhal_3780 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529183.1 3892661 R 472759 CDS YP_003529184.1 292493745 8918797 3893757..3895034 1 NC_013960.1 PFAM: succinylglutamate desuccinylase/aspartoacylase; KEGG: noc:Noc_0161 succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase 3895034 8918797 Nhal_3781 Nitrosococcus halophilus Nc4 succinylglutamate desuccinylase/aspartoacylase YP_003529184.1 3893757 D 472759 CDS YP_003529185.1 292493746 8918798 3895167..3895292 1 NC_013960.1 hypothetical protein 3895292 8918798 Nhal_3782 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529185.1 3895167 D 472759 CDS YP_003529186.1 292493747 8918800 3896930..3899233 1 NC_013960.1 KEGG: dac:Daci_4352 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; PAS sensor protein 3899233 8918800 Nhal_3784 Nitrosococcus halophilus Nc4 PAS sensor protein YP_003529186.1 3896930 D 472759 CDS YP_003529187.1 292493748 8918801 3899266..3900300 1 NC_013960.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: rpe:RPE_1630 aromatic amino acid beta-eliminating lyase/threonine aldolase; threonine aldolase 3900300 8918801 Nhal_3785 Nitrosococcus halophilus Nc4 threonine aldolase YP_003529187.1 3899266 D 472759 CDS YP_003529188.1 292493749 8918802 complement(3900444..3901685) 1 NC_013960.1 PFAM: sodium/hydrogen exchanger; KEGG: noc:Noc_0159 sodium/hydrogen exchanger; sodium/hydrogen exchanger 3901685 8918802 Nhal_3786 Nitrosococcus halophilus Nc4 sodium/hydrogen exchanger YP_003529188.1 3900444 R 472759 CDS YP_003529189.1 292493750 8918803 3901929..3902807 1 NC_013960.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: mms:mma_0700 transporter of the DMT superfamily; hypothetical protein 3902807 8918803 Nhal_3787 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529189.1 3901929 D 472759 CDS YP_003529190.1 292493751 8918804 complement(3903037..3903420) 1 NC_013960.1 KEGG: noc:Noc_3007 hypothetical protein; hypothetical protein 3903420 8918804 Nhal_3788 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529190.1 3903037 R 472759 CDS YP_003529191.1 292493752 8918805 complement(3903562..3904254) 1 NC_013960.1 KEGG: noc:Noc_3006 hypothetical protein; hypothetical protein 3904254 8918805 Nhal_3789 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529191.1 3903562 R 472759 CDS YP_003529192.1 292493753 8918806 3904694..3905506 1 NC_013960.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hypothetical protein; short-chain dehydrogenase/reductase SDR 3905506 8918806 Nhal_3790 Nitrosococcus halophilus Nc4 short-chain dehydrogenase/reductase SDR YP_003529192.1 3904694 D 472759 CDS YP_003529193.1 292493754 8918807 complement(3905541..3906683) 1 NC_013960.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pae:PA0396 twitching motility protein PilU; twitching motility protein 3906683 8918807 Nhal_3791 Nitrosococcus halophilus Nc4 twitching motility protein YP_003529193.1 3905541 R 472759 CDS YP_003529194.1 292493755 8918808 complement(3906692..3907729) 1 NC_013960.1 KEGG: noc:Noc_3004 pilus retraction protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: ATPase AAA; twitching motility protein 3907729 8918808 Nhal_3792 Nitrosococcus halophilus Nc4 twitching motility protein YP_003529194.1 3906692 R 472759 CDS YP_003529195.1 292493756 8918809 3907850..3908545 1 NC_013960.1 PFAM: alanine racemase domain protein; KEGG: noc:Noc_3003 hypothetical protein; alanine racemase domain-containing protein 3908545 8918809 Nhal_3793 Nitrosococcus halophilus Nc4 alanine racemase domain-containing protein YP_003529195.1 3907850 D 472759 CDS YP_003529196.1 292493757 8918810 3908640..3909473 1 NC_013960.1 KEGG: noc:Noc_3002 delta 1-pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase 3909473 8918810 Nhal_3794 Nitrosococcus halophilus Nc4 pyrroline-5-carboxylate reductase YP_003529196.1 3908640 D 472759 CDS YP_003529197.1 292493758 8918811 3909466..3910029 1 NC_013960.1 PFAM: protein of unknown function YGGT; KEGG: noc:Noc_3001 hypothetical protein; hypothetical protein 3910029 8918811 Nhal_3795 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529197.1 3909466 D 472759 CDS YP_003529198.1 292493759 8918812 3910036..3910344 1 NC_013960.1 PFAM: protein of unknown function DUF167; KEGG: noc:Noc_3000 hypothetical protein; hypothetical protein 3910344 8918812 Nhal_3796 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529198.1 3910036 D 472759 CDS YP_003529199.1 292493760 8918813 complement(3910387..3911610) 1 NC_013960.1 PFAM: major facilitator superfamily MFS_1; KEGG: noc:Noc_2999 major facilitator transporter; major facilitator superfamily protein 3911610 8918813 Nhal_3797 Nitrosococcus halophilus Nc4 major facilitator superfamily protein YP_003529199.1 3910387 R 472759 CDS YP_003529200.1 292493761 8918814 3911734..3912396 1 NC_013960.1 KEGG: noc:Noc_2998 orotate phosphoribosyltransferase; TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; orotate phosphoribosyltransferase 3912396 8918814 Nhal_3798 Nitrosococcus halophilus Nc4 orotate phosphoribosyltransferase YP_003529200.1 3911734 D 472759 CDS YP_003529201.1 292493762 8918815 complement(3912386..3913141) 1 NC_013960.1 PFAM: protein of unknown function DUF81; KEGG: noc:Noc_2997 hypothetical protein; hypothetical protein 3913141 8918815 Nhal_3799 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529201.1 3912386 R 472759 CDS YP_003529202.1 292493763 8918816 3913184..3913822 1 NC_013960.1 KEGG: noc:Noc_2996 hypothetical protein; hypothetical protein 3913822 8918816 Nhal_3800 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529202.1 3913184 D 472759 CDS YP_003529203.1 292493764 8918817 complement(3913862..3914788) 1 NC_013960.1 KEGG: noc:Noc_2995 acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; acetylglutamate kinase 3914788 8918817 Nhal_3801 Nitrosococcus halophilus Nc4 acetylglutamate kinase YP_003529203.1 3913862 R 472759 CDS YP_003529204.1 292493765 8918818 complement(3914828..3917326) 1 NC_013960.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; KEGG: noc:Noc_2994 phosphomannomutase; phosphomannomutase 3917326 8918818 Nhal_3802 Nitrosococcus halophilus Nc4 phosphomannomutase YP_003529204.1 3914828 R 472759 CDS YP_003529205.1 292493766 8918819 complement(3917554..3918009) 1 NC_013960.1 TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; KEGG: noc:Noc_2993 deoxyuridine 5'-triphosphate nucleotidohydrolase; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut 3918009 8918819 Nhal_3803 Nitrosococcus halophilus Nc4 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut YP_003529205.1 3917554 R 472759 CDS YP_003529206.1 292493767 8918820 complement(3917990..3919201) 1 NC_013960.1 KEGG: noc:Noc_2992 DNA/pantothenate metabolism flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase 3919201 8918820 Nhal_3804 Nitrosococcus halophilus Nc4 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase YP_003529206.1 3917990 R 472759 CDS YP_003529207.1 292493768 8918821 3919448..3920239 1 NC_013960.1 PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: noc:Noc_2989 DNA-J like membrane chaperone protein; heat shock protein DnaJ domain-containing protein 3920239 8918821 Nhal_3805 Nitrosococcus halophilus Nc4 heat shock protein DnaJ domain-containing protein YP_003529207.1 3919448 D 472759 CDS YP_003529208.1 292493769 8918822 3920265..3921107 1 NC_013960.1 KEGG: noc:Noc_2990 hypothetical protein; hypothetical protein 3921107 8918822 Nhal_3806 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529208.1 3920265 D 472759 CDS YP_003529209.1 292493770 8918823 complement(3921104..3921760) 1 NC_013960.1 KEGG: noc:Noc_2991 hypothetical protein; hypothetical protein 3921760 8918823 Nhal_3807 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529209.1 3921104 R 472759 CDS YP_003529210.1 292493771 8918824 3922325..3923578 1 NC_013960.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: noc:Noc_2006 oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3923578 8918824 Nhal_3808 Nitrosococcus halophilus Nc4 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_003529210.1 3922325 D 472759 CDS YP_003529211.1 292493772 8918825 3923640..3924383 1 NC_013960.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: mca:MCA1384 UbiE/COQ5 family methlytransferase; type 11 methyltransferase 3924383 8918825 Nhal_3809 Nitrosococcus halophilus Nc4 type 11 methyltransferase YP_003529211.1 3923640 D 472759 CDS YP_003529212.1 292493773 8918826 complement(3924489..3925562) 1 NC_013960.1 KEGG: noc:Noc_3008 uroporphyrinogen decarboxylase HemE; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: uroporphyrinogen decarboxylase (URO-D); uroporphyrinogen decarboxylase 3925562 8918826 Nhal_3810 Nitrosococcus halophilus Nc4 uroporphyrinogen decarboxylase YP_003529212.1 3924489 R 472759 CDS YP_003529213.1 292493774 8918827 complement(3925757..3926257) 1 NC_013960.1 KEGG: noc:Noc_3009 phosphoribosylaminoimidazole carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase, catalytic subunit 3926257 8918827 Nhal_3811 Nitrosococcus halophilus Nc4 phosphoribosylaminoimidazole carboxylase, catalytic subunit YP_003529213.1 3925757 R 472759 CDS YP_003529214.1 292493775 8918828 complement(3926322..3928676) 1 NC_013960.1 KEGG: noc:Noc_3010 DNA topoisomerase III; TIGRFAM: DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein; DNA topoisomerase I 3928676 8918828 Nhal_3812 Nitrosococcus halophilus Nc4 DNA topoisomerase I YP_003529214.1 3926322 R 472759 CDS YP_003529215.1 292493776 8918829 complement(3928789..3929268) 1 NC_013960.1 PFAM: protein of unknown function DUF494; KEGG: noc:Noc_3011 hypothetical protein; hypothetical protein 3929268 8918829 Nhal_3813 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529215.1 3928789 R 472759 CDS YP_003529216.1 292493777 8918830 complement(3929265..3930371) 1 NC_013960.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: noc:Noc_3012 smf protein; DNA protecting protein DprA 3930371 8918830 Nhal_3814 Nitrosococcus halophilus Nc4 DNA protecting protein DprA YP_003529216.1 3929265 R 472759 CDS YP_003529217.1 292493778 8918831 complement(3930396..3931433) 1 NC_013960.1 PFAM: peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: noc:Noc_3013 peptidoglycan-binding LysM; peptidoglycan-binding LysM 3931433 8918831 Nhal_3815 Nitrosococcus halophilus Nc4 peptidoglycan-binding LysM YP_003529217.1 3930396 R 472759 CDS YP_003529218.1 292493779 8918832 3931707..3932210 1 NC_013960.1 KEGG: noc:Noc_3014 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 3932210 8918832 Nhal_3816 Nitrosococcus halophilus Nc4 peptide deformylase YP_003529218.1 3931707 D 472759 CDS YP_003529219.1 292493780 8918833 3932466..3933434 1 NC_013960.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: noc:Noc_3015 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 3933434 8918833 Nhal_3817 Nitrosococcus halophilus Nc4 methionyl-tRNA formyltransferase YP_003529219.1 3932466 D 472759 CDS YP_003529220.1 292493781 8918834 3933444..3934766 1 NC_013960.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: noc:Noc_3016 Fmu, rRNA SAM-dependent methyltransferase; sun protein 3934766 8918834 Nhal_3818 Nitrosococcus halophilus Nc4 sun protein YP_003529220.1 3933444 D 472759 CDS YP_003529221.1 292493782 8918835 3934744..3935337 1 NC_013960.1 KEGG: noc:Noc_3017 hypothetical protein; hypothetical protein 3935337 8918835 Nhal_3819 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529221.1 3934744 D 472759 CDS YP_003529222.1 292493783 8918836 3935301..3937502 1 NC_013960.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: noc:Noc_3018 signal transduction histidine kinase, NtrY; ATP-binding region ATPase domain-containing protein 3937502 8918836 Nhal_3820 Nitrosococcus halophilus Nc4 ATP-binding region ATPase domain-containing protein YP_003529222.1 3935301 D 472759 CDS YP_003529223.1 292493784 8918837 3937499..3938860 1 NC_013960.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; ATPase AAA; KEGG: noc:Noc_3019 two component, sigma-54 specific, fis family transcriptional regulator; sigma-54 factor interaction domain-containing protein 3938860 8918837 Nhal_3821 Nitrosococcus halophilus Nc4 sigma-54 factor interaction domain-containing protein YP_003529223.1 3937499 D 472759 CDS YP_003529224.1 292493785 8918838 3938909..3940282 1 NC_013960.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: noc:Noc_3020 potassium transporter peripheral membrane component; TrkA-N domain-containing protein 3940282 8918838 Nhal_3822 Nitrosococcus halophilus Nc4 TrkA-N domain-containing protein YP_003529224.1 3938909 D 472759 CDS YP_003529225.1 292493786 8918839 complement(3940289..3943156) 1 NC_013960.1 TIGRFAM: excinuclease ABC subunit A; PFAM: ABC transporter related; KEGG: noc:Noc_3021 excinuclease ABC subunit A; excinuclease ABC subunit A 3943156 8918839 Nhal_3823 Nitrosococcus halophilus Nc4 excinuclease ABC subunit A YP_003529225.1 3940289 R 472759 CDS YP_003529226.1 292493787 8918840 3943219..3944637 1 NC_013960.1 PFAM: major facilitator superfamily MFS_1; KEGG: noc:Noc_3022 major facilitator transporter; major facilitator superfamily protein 3944637 8918840 Nhal_3824 Nitrosococcus halophilus Nc4 major facilitator superfamily protein YP_003529226.1 3943219 D 472759 CDS YP_003529227.1 292493788 8918841 3944676..3945146 1 NC_013960.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: noc:Noc_3023 single-strand binding protein; single-strand binding protein 3945146 8918841 Nhal_3825 Nitrosococcus halophilus Nc4 single-strand binding protein YP_003529227.1 3944676 D 472759 CDS YP_003529228.1 292493789 8918843 3945640..3946206 1 NC_013960.1 PFAM: FRG domain protein; KEGG: eca:ECA2892 hypothetical protein; FRG domain-containing protein 3946206 8918843 Nhal_3827 Nitrosococcus halophilus Nc4 FRG domain-containing protein YP_003529228.1 3945640 D 472759 CDS YP_003529229.1 292493790 8918844 complement(3946365..3947165) 1 NC_013960.1 PFAM: transposase IS4 family protein; KEGG: met:M446_6909 transposase IS4 family protein; transposase IS4 family protein 3947165 8918844 Nhal_3828 Nitrosococcus halophilus Nc4 transposase IS4 family protein YP_003529229.1 3946365 R 472759 CDS YP_003529230.1 292493791 8918846 3947342..3947689 1 NC_013960.1 KEGG: maq:Maqu_2675 hypothetical protein; hypothetical protein 3947689 8918846 Nhal_3830 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529230.1 3947342 D 472759 CDS YP_003529231.1 292493792 8918848 complement(3948366..3950063) 1 NC_013960.1 KEGG: amc:MADE_03437 lipoprotein; hypothetical protein 3950063 8918848 Nhal_3832 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529231.1 3948366 R 472759 CDS YP_003529232.1 292493793 8918849 complement(3950209..3953316) 1 NC_013960.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_3993 TonB-dependent receptor; TonB-dependent receptor 3953316 8918849 Nhal_3833 Nitrosococcus halophilus Nc4 TonB-dependent receptor YP_003529232.1 3950209 R 472759 CDS YP_003529233.1 292493794 8918850 complement(3953452..3954633) 1 NC_013960.1 SMART: hypothetical protein; KEGG: mxa:MXAN_5179 hypothetical protein; hypothetical protein 3954633 8918850 Nhal_3834 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529233.1 3953452 R 472759 CDS YP_003529234.1 292493795 8918851 complement(3954676..3955311) 1 NC_013960.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: dde:Dde_2156 TonB-like; TonB family protein 3955311 8918851 Nhal_3835 Nitrosococcus halophilus Nc4 TonB family protein YP_003529234.1 3954676 R 472759 CDS YP_003529235.1 292493796 8918852 complement(3955326..3955730) 1 NC_013960.1 PFAM: biopolymertransporter ExbD/TolR; KEGG: asa:ASA_4320 biopolymer transporter; biopolymertransporter ExbD/TolR 3955730 8918852 Nhal_3836 Nitrosococcus halophilus Nc4 biopolymertransporter ExbD/TolR YP_003529235.1 3955326 R 472759 CDS YP_003529236.1 292493797 8918853 complement(3955737..3956363) 1 NC_013960.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dol:Dole_1737 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 3956363 8918853 Nhal_3837 Nitrosococcus halophilus Nc4 MotA/TolQ/ExbB proton channel YP_003529236.1 3955737 R 472759 CDS YP_003529237.1 292493798 8918854 complement(3956384..3957868) 1 NC_013960.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dal:Dalk_3681 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 3957868 8918854 Nhal_3838 Nitrosococcus halophilus Nc4 MotA/TolQ/ExbB proton channel YP_003529237.1 3956384 R 472759 CDS YP_003529238.1 292493799 8918855 complement(3957865..3958638) 1 NC_013960.1 KEGG: noc:Noc_0606 hypothetical protein; hypothetical protein 3958638 8918855 Nhal_3839 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529238.1 3957865 R 472759 CDS YP_003529239.1 292493800 8918856 complement(3959003..3960925) 1 NC_013960.1 KEGG: noc:Noc_0319 two component diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: metal-dependent hydrolase HDOD; GGDEF domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein; response regulator receiver; diguanylate cyclase 3960925 8918856 Nhal_3840 Nitrosococcus halophilus Nc4 diguanylate cyclase YP_003529239.1 3959003 R 472759 CDS YP_003529240.1 292493801 8918857 complement(3961077..3961979) 1 NC_013960.1 TIGRFAM: tyrosine recombinase XerC; PFAM: integrase family protein; integrase; KEGG: noc:Noc_0318 site-specific tyrosine recombinase XerC; tyrosine recombinase XerC 3961979 8918857 Nhal_3841 Nitrosococcus halophilus Nc4 tyrosine recombinase XerC YP_003529240.1 3961077 R 472759 CDS YP_003529241.1 292493802 8918858 complement(3961986..3962717) 1 NC_013960.1 PFAM: protein of unknown function DUF484; KEGG: noc:Noc_0317 hypothetical protein; hypothetical protein 3962717 8918858 Nhal_3842 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529241.1 3961986 R 472759 CDS YP_003529242.1 292493803 8918859 complement(3962714..3963544) 1 NC_013960.1 KEGG: noc:Noc_0316 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase; Phenazine biosynthesis PhzC/PhzF protein; diaminopimelate epimerase 3963544 8918859 Nhal_3843 Nitrosococcus halophilus Nc4 diaminopimelate epimerase YP_003529242.1 3962714 R 472759 CDS YP_003529243.1 292493804 8918860 complement(3963576..3964262) 1 NC_013960.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: noc:Noc_0315 hypothetical protein; type 11 methyltransferase 3964262 8918860 Nhal_3844 Nitrosococcus halophilus Nc4 type 11 methyltransferase YP_003529243.1 3963576 R 472759 CDS YP_003529244.1 292493805 8918861 complement(3964323..3965573) 1 NC_013960.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: noc:Noc_0314 diaminopimelate decarboxylase; diaminopimelate decarboxylase 3965573 8918861 Nhal_3845 Nitrosococcus halophilus Nc4 diaminopimelate decarboxylase YP_003529244.1 3964323 R 472759 CDS YP_003529245.1 292493806 8918862 complement(3965577..3965711) 1 NC_013960.1 hypothetical protein 3965711 8918862 Nhal_3846 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529245.1 3965577 R 472759 CDS YP_003529246.1 292493807 8918863 3965956..3967644 1 NC_013960.1 TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; general secretory system II protein E domain protein; KEGG: noc:Noc_0312 type II secretion system protein E; type IV-A pilus assembly ATPase PilB 3967644 8918863 Nhal_3847 Nitrosococcus halophilus Nc4 type IV-A pilus assembly ATPase PilB YP_003529246.1 3965956 D 472759 CDS YP_003529247.1 292493808 8918864 3967649..3968869 1 NC_013960.1 PFAM: type II secretion system protein; KEGG: noc:Noc_0311 type II secretion system protein F; type II secretion system protein 3968869 8918864 Nhal_3848 Nitrosococcus halophilus Nc4 type II secretion system protein YP_003529247.1 3967649 D 472759 CDS YP_003529248.1 292493809 8918865 3968889..3969758 1 NC_013960.1 PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: noc:Noc_0310 prepilin peptidase; prepilin peptidase 3969758 8918865 Nhal_3849 Nitrosococcus halophilus Nc4 prepilin peptidase YP_003529248.1 3968889 D 472759 CDS YP_003529249.1 292493810 8918866 3969808..3970407 1 NC_013960.1 KEGG: noc:Noc_0309 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase 3970407 8918866 Nhal_3850 Nitrosococcus halophilus Nc4 dephospho-CoA kinase YP_003529249.1 3969808 D 472759 CDS YP_003529250.1 292493811 8918867 3970503..3971270 1 NC_013960.1 PFAM: protein of unknown function DUF1342; KEGG: tgr:Tgr7_0783 hypothetical protein; hypothetical protein 3971270 8918867 Nhal_3851 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529250.1 3970503 D 472759 CDS YP_003529251.1 292493812 8918868 3971267..3971455 1 NC_013960.1 PFAM: protein of unknown function DUF329; KEGG: noc:Noc_0308 hypothetical protein; hypothetical protein 3971455 8918868 Nhal_3852 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529251.1 3971267 D 472759 CDS YP_003529252.1 292493813 8918869 complement(3971574..3972530) 1 NC_013960.1 TIGRFAM: mutator MutT protein; PFAM: thiamine monophosphate synthase; NUDIX hydrolase; KEGG: noc:Noc_0306 hypothetical protein; mutator MutT protein 3972530 8918869 Nhal_3853 Nitrosococcus halophilus Nc4 mutator MutT protein YP_003529252.1 3971574 R 472759 CDS YP_003529253.1 292493814 8918870 3972577..3972783 1 NC_013960.1 KEGG: noc:Noc_0305 hypothetical protein; hypothetical protein 3972783 8918870 Nhal_3854 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529253.1 3972577 D 472759 CDS YP_003529254.1 292493815 8918871 complement(3972857..3973084) 1 NC_013960.1 KEGG: noc:Noc_0304 hypothetical protein; hypothetical protein 3973084 8918871 Nhal_3855 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529254.1 3972857 R 472759 CDS YP_003529255.1 292493816 8918872 complement(3973149..3974246) 1 NC_013960.1 TIGRFAM: quinolinate synthetase complex, subunit alpha; PFAM: Quinolinate synthetase A; KEGG: noc:Noc_0303 quinolinate synthetase; quinolinate synthetase complex subunit alpha 3974246 8918872 Nhal_3856 Nitrosococcus halophilus Nc4 quinolinate synthetase complex subunit alpha YP_003529255.1 3973149 R 472759 CDS YP_003529256.1 292493817 8918873 complement(3974495..3976282) 1 NC_013960.1 TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); GAD domain protein; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: noc:Noc_0302 aspartyl-tRNA synthetase; aspartyl-tRNA synthetase 3976282 8918873 Nhal_3857 Nitrosococcus halophilus Nc4 aspartyl-tRNA synthetase YP_003529256.1 3974495 R 472759 CDS YP_003529257.1 292493818 8918874 complement(3976558..3976887) 1 NC_013960.1 TIGRFAM: FmdB family transcriptional regulator; KEGG: noc:Noc_0301 hypothetical protein; FmdB family transcriptional regulator 3976887 8918874 Nhal_3858 Nitrosococcus halophilus Nc4 FmdB family transcriptional regulator YP_003529257.1 3976558 R 472759 CDS YP_003529258.1 292493819 8918875 3977161..3977823 1 NC_013960.1 PFAM: protein of unknown function DUF1614; KEGG: mca:MCA0983 hypothetical protein; hypothetical protein 3977823 8918875 Nhal_3859 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529258.1 3977161 D 472759 CDS YP_003529259.1 292493820 8918876 3977974..3978579 1 NC_013960.1 KEGG: noc:Noc_0299 ubiquinol-cytochrome C reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome C reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome C reductase, iron-sulfur subunit 3978579 8918876 Nhal_3860 Nitrosococcus halophilus Nc4 ubiquinol-cytochrome C reductase, iron-sulfur subunit YP_003529259.1 3977974 D 472759 CDS YP_003529260.1 292493821 8918877 3978579..3979805 1 NC_013960.1 PFAM: cytochrome b/b6 domain; KEGG: noc:Noc_0298 cytochrome b/b6-like; cytochrome b/b6 domain-containing protein 3979805 8918877 Nhal_3861 Nitrosococcus halophilus Nc4 cytochrome b/b6 domain-containing protein YP_003529260.1 3978579 D 472759 CDS YP_003529261.1 292493822 8918878 3979802..3980524 1 NC_013960.1 PFAM: cytochrome C1; KEGG: noc:Noc_0297 cytochrome C1; cytochrome C1 3980524 8918878 Nhal_3862 Nitrosococcus halophilus Nc4 cytochrome C1 YP_003529261.1 3979802 D 472759 CDS YP_003529262.1 292493823 8918879 3980741..3981379 1 NC_013960.1 PFAM: glutathione S-transferase domain; KEGG: noc:Noc_0296 glutathione S-transferase-like protein; glutathione S-transferase domain-containing protein 3981379 8918879 Nhal_3863 Nitrosococcus halophilus Nc4 glutathione S-transferase domain-containing protein YP_003529262.1 3980741 D 472759 CDS YP_003529263.1 292493824 8918880 3981397..3981813 1 NC_013960.1 PFAM: stringent starvation protein B; KEGG: noc:Noc_0295 ClpXP protease specificity-enhancing factor; stringent starvation protein B 3981813 8918880 Nhal_3864 Nitrosococcus halophilus Nc4 stringent starvation protein B YP_003529263.1 3981397 D 472759 CDS YP_003529264.1 292493825 8918881 complement(3981684..3982901) 1 NC_013960.1 SMART: extracellular solute-binding protein family 3; KEGG: bxe:Bxe_B2425 ABC transporter periplasmic ligand binding protein; family 3 extracellular solute-binding protein 3982901 8918881 Nhal_3865 Nitrosococcus halophilus Nc4 family 3 extracellular solute-binding protein YP_003529264.1 3981684 R 472759 CDS YP_003529265.1 292493826 8918882 complement(3983063..3984865) 1 NC_013960.1 KEGG: sme:SM_b20173 methanol dehydrogenase protein, large subunit; TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: pyrrolo-quinoline quinone; SMART: pyrrolo-quinoline quinone; PQQ-dependent dehydrogenase, methanol/ethanol family 3984865 8918882 Nhal_3866 Nitrosococcus halophilus Nc4 PQQ-dependent dehydrogenase, methanol/ethanol family YP_003529265.1 3983063 R 472759 CDS YP_003529266.1 292493827 8918883 complement(3985094..3986533) 1 NC_013960.1 TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: noc:Noc_0264 glutamyl-tRNA synthetase; glutamyl-tRNA synthetase 3986533 8918883 Nhal_3867 Nitrosococcus halophilus Nc4 glutamyl-tRNA synthetase YP_003529266.1 3985094 R 472759 CDS YP_003529267.1 292493828 8918884 3986869..3987306 1 NC_013960.1 PFAM: blue (type 1) copper domain protein; KEGG: noc:Noc_0263 blue (type1) copper domain-containing protein; blue (type 1) copper domain-containing protein 3987306 8918884 Nhal_3868 Nitrosococcus halophilus Nc4 blue (type 1) copper domain-containing protein YP_003529267.1 3986869 D 472759 CDS YP_003529268.1 292493829 8918885 complement(3987366..3987707) 1 NC_013960.1 KEGG: vei:Veis_4971 hypothetical protein; hypothetical protein 3987707 8918885 Nhal_3869 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529268.1 3987366 R 472759 CDS YP_003529269.1 292493830 8918886 3987949..3989517 1 NC_013960.1 KEGG: noc:Noc_0262 NAD(P) transhydrogenase subunit alpha; TIGRFAM: NAD(P) transhydrogenase, subunit alpha; PFAM: alanine dehydrogenase/PNT domain protein; NAD(P) transhydrogenase subunit alpha 3989517 8918886 Nhal_3870 Nitrosococcus halophilus Nc4 NAD(P) transhydrogenase subunit alpha YP_003529269.1 3987949 D 472759 CDS YP_003529270.1 292493831 8918887 3989531..3990979 1 NC_013960.1 PFAM: NAD(P) transhydrogenase subunit beta; KEGG: noc:Noc_0261 NAD(P) transhydrogenase subunit beta; NAD(P)(+) transhydrogenase 3990979 8918887 Nhal_3871 Nitrosococcus halophilus Nc4 NAD(P)(+) transhydrogenase YP_003529270.1 3989531 D 472759 CDS YP_003529271.1 292493832 8918888 3991079..3991942 1 NC_013960.1 PFAM: methylene-tetrahydromethanopterin dehydrogenase ; shikimate/quinate 5-dehydrogenase; KEGG: mpo:Mpop_1749 methylenetetrahydrofolate dehydrogenase (NADP(+)); methylenetetrahydrofolate dehydrogenase 3991942 8918888 Nhal_3872 Nitrosococcus halophilus Nc4 methylenetetrahydrofolate dehydrogenase YP_003529271.1 3991079 D 472759 CDS YP_003529272.1 292493833 8918889 3991967..3992974 1 NC_013960.1 TIGRFAM: beta-ribofuranosylaminobenzene 5'-phosphate synthase family; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: mch:Mchl_2163 beta-ribofuranosylaminobenzene 5'-phosphate synthase family; beta-ribofuranosylaminobenzene 5'-phosphate synthase family protein 3992974 8918889 Nhal_3873 Nitrosococcus halophilus Nc4 beta-ribofuranosylaminobenzene 5'-phosphate synthase family protein YP_003529272.1 3991967 D 472759 CDS YP_003529273.1 292493834 8918890 3993114..3994016 1 NC_013960.1 PFAM: methylene-tetrahydromethanopterin dehydrogenase; KEGG: mca:MCA3018 methylene tetrahydromethanopterin dehydrogenase/methylenetetrahydrofolate dehydrogenase; methylenetetrahydrofolate dehydrogenase 3994016 8918890 Nhal_3874 Nitrosococcus halophilus Nc4 methylenetetrahydrofolate dehydrogenase YP_003529273.1 3993114 D 472759 CDS YP_003529274.1 292493835 8918891 3993982..3995193 1 NC_013960.1 PFAM: protein of unknown function DUF201; KEGG: noc:Noc_0260 hypothetical protein; hypothetical protein 3995193 8918891 Nhal_3875 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529274.1 3993982 D 472759 CDS YP_003529275.1 292493836 8918892 3995277..3996266 1 NC_013960.1 KEGG: mfa:Mfla_1658 N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase; TIGRFAM: methenyltetrahydromethanopterin cyclohydrolase; PFAM: Methenyltetrahydromethanopterin cyclohydrolase; methenyltetrahydromethanopterin cyclohydrolase 3996266 8918892 Nhal_3876 Nitrosococcus halophilus Nc4 methenyltetrahydromethanopterin cyclohydrolase YP_003529275.1 3995277 D 472759 CDS YP_003529276.1 292493837 8918893 3996263..3997174 1 NC_013960.1 TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp; KEGG: noc:Noc_0259 S6 modification enzyme RimK; RimK family alpha-L-glutamate ligase 3997174 8918893 Nhal_3877 Nitrosococcus halophilus Nc4 RimK family alpha-L-glutamate ligase YP_003529276.1 3996263 D 472759 CDS YP_003529277.1 292493838 8918894 3997171..3998055 1 NC_013960.1 PFAM: triphosphoribosyl-dephospho-CoA protein; KEGG: mfa:Mfla_1656 triphosphoribosyl-dephospho-CoA protein; triphosphoribosyl-dephospho-CoA protein 3998055 8918894 Nhal_3878 Nitrosococcus halophilus Nc4 triphosphoribosyl-dephospho-CoA protein YP_003529277.1 3997171 D 472759 CDS YP_003529278.1 292493839 8918895 3998186..3998707 1 NC_013960.1 TIGRFAM: formaldehyde-activating enzyme; PFAM: Formaldehyde-activating enzyme (Fae); KEGG: mfa:Mfla_1652 formaldehyde-activating enzyme; formaldehyde-activating enzyme 3998707 8918895 Nhal_3879 Nitrosococcus halophilus Nc4 formaldehyde-activating enzyme YP_003529278.1 3998186 D 472759 CDS YP_003529279.1 292493840 8918896 complement(3998754..3999467) 1 NC_013960.1 PFAM: histidine biosynthesis protein; KEGG: noc:Noc_0258 histidine biosynthesis; histidine biosynthesis protein 3999467 8918896 Nhal_3880 Nitrosococcus halophilus Nc4 histidine biosynthesis protein YP_003529279.1 3998754 R 472759 CDS YP_003529280.1 292493841 8918897 3999521..4000561 1 NC_013960.1 PFAM: protein of unknown function DUF201; KEGG: noc:Noc_0257 hypothetical protein; hypothetical protein 4000561 8918897 Nhal_3881 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529280.1 3999521 D 472759 CDS YP_003529281.1 292493842 8918898 4000536..4001597 1 NC_013960.1 TIGRFAM: H4MPT-linked C1 transfer pathway protein; PFAM: hydantoinase/oxoprolinase; KEGG: noc:Noc_0256 S-layer protein; H4MPT-linked C1 transfer pathway protein 4001597 8918898 Nhal_3882 Nitrosococcus halophilus Nc4 H4MPT-linked C1 transfer pathway protein YP_003529281.1 4000536 D 472759 CDS YP_003529282.1 292493843 8918899 4001605..4003020 1 NC_013960.1 KEGG: noc:Noc_0255 para-aminobenzoate synthase, component I; TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: chorismate binding-like; anthranilate synthase component I domain protein; para-aminobenzoate synthase subunit I 4003020 8918899 Nhal_3883 Nitrosococcus halophilus Nc4 para-aminobenzoate synthase subunit I YP_003529282.1 4001605 D 472759 CDS YP_003529283.1 292493844 8918900 4003255..4003863 1 NC_013960.1 PFAM: aspartate/glutamate/uridylate kinase; KEGG: noc:Noc_0254 amino acid kinase family protein; aspartate/glutamate/uridylate kinase 4003863 8918900 Nhal_3884 Nitrosococcus halophilus Nc4 aspartate/glutamate/uridylate kinase YP_003529283.1 4003255 D 472759 CDS YP_003529284.1 292493845 8918901 complement(4004420..4005496) 1 NC_013960.1 TIGRFAM: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; KEGG: noc:Noc_0253 3-dehydroquinate synthase; 3-dehydroquinate synthase 4005496 8918901 Nhal_3885 Nitrosococcus halophilus Nc4 3-dehydroquinate synthase YP_003529284.1 4004420 R 472759 CDS YP_003529285.1 292493846 8918902 complement(4005569..4006117) 1 NC_013960.1 PFAM: shikimate kinase; KEGG: noc:Noc_0252 shikimate kinase; shikimate kinase 4006117 8918902 Nhal_3886 Nitrosococcus halophilus Nc4 shikimate kinase YP_003529285.1 4005569 R 472759 CDS YP_003529286.1 292493847 8918903 complement(4006287..4008386) 1 NC_013960.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: noc:Noc_0251 fimbrial assembly protein PilQ precursor; type IV pilus secretin PilQ 4008386 8918903 Nhal_3887 Nitrosococcus halophilus Nc4 type IV pilus secretin PilQ YP_003529286.1 4006287 R 472759 CDS YP_003529287.1 292493848 8918904 complement(4008403..4008981) 1 NC_013960.1 PFAM: pilus assembly protein PilP; KEGG: noc:Noc_0250 pilus assembly protein, PilQ; pilus assembly protein PilP 4008981 8918904 Nhal_3888 Nitrosococcus halophilus Nc4 pilus assembly protein PilP YP_003529287.1 4008403 R 472759 CDS YP_003529288.1 292493849 8918905 complement(4008978..4009595) 1 NC_013960.1 PFAM: pilus assembly protein PilO; KEGG: noc:Noc_0249 pilus assembly protein, PilO; pilus assembly protein PilO 4009595 8918905 Nhal_3889 Nitrosococcus halophilus Nc4 pilus assembly protein PilO YP_003529288.1 4008978 R 472759 CDS YP_003529289.1 292493850 8918906 complement(4009595..4010170) 1 NC_013960.1 PFAM: fimbrial assembly family protein; KEGG: noc:Noc_0248 type 4 fimbrial biogenesis protein PilN; fimbrial assembly family protein 4010170 8918906 Nhal_3890 Nitrosococcus halophilus Nc4 fimbrial assembly family protein YP_003529289.1 4009595 R 472759 CDS YP_003529290.1 292493851 8918907 complement(4010170..4011285) 1 NC_013960.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: noc:Noc_0247 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM 4011285 8918907 Nhal_3891 Nitrosococcus halophilus Nc4 type IV pilus assembly protein PilM YP_003529290.1 4010170 R 472759 CDS YP_003529291.1 292493852 8918908 4011511..4013949 1 NC_013960.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: noc:Noc_0246 penicillin-binding protein 1A; penicillin-binding protein, 1A family 4013949 8918908 Nhal_3892 Nitrosococcus halophilus Nc4 penicillin-binding protein, 1A family YP_003529291.1 4011511 D 472759 CDS YP_003529292.1 292493853 8918909 4013972..4014580 1 NC_013960.1 KEGG: noc:Noc_0245 hypothetical protein; hypothetical protein 4014580 8918909 Nhal_3893 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529292.1 4013972 D 472759 CDS YP_003529293.1 292493854 8918910 complement(4014575..4015888) 1 NC_013960.1 PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: noc:Noc_0244 malate dehydrogenase; malate dehydrogenase 4015888 8918910 Nhal_3894 Nitrosococcus halophilus Nc4 malate dehydrogenase YP_003529293.1 4014575 R 472759 CDS YP_003529294.1 292493855 8918911 complement(4016044..4016250) 1 NC_013960.1 TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: noc:Noc_0243 ribosomal protein L31; 50S ribosomal protein L31 4016250 8918911 Nhal_3895 Nitrosococcus halophilus Nc4 50S ribosomal protein L31 YP_003529294.1 4016044 R 472759 CDS YP_003529295.1 292493856 8918912 complement(4016416..4017867) 1 NC_013960.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: noc:Noc_0242 K+ transporter trk; potassium uptake protein, TrkH family 4017867 8918912 Nhal_3896 Nitrosococcus halophilus Nc4 potassium uptake protein, TrkH family YP_003529295.1 4016416 R 472759 CDS YP_003529296.1 292493857 8918913 complement(4017875..4019437) 1 NC_013960.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: noc:Noc_0241 apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 4019437 8918913 Nhal_3897 Nitrosococcus halophilus Nc4 apolipoprotein N-acyltransferase YP_003529296.1 4017875 R 472759 CDS YP_003529297.1 292493858 8918914 complement(4019503..4020387) 1 NC_013960.1 PFAM: CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; KEGG: noc:Noc_0240 Mg2+/Co2+ transporter; CBS domain-containing protein 4020387 8918914 Nhal_3898 Nitrosococcus halophilus Nc4 CBS domain-containing protein YP_003529297.1 4019503 R 472759 CDS YP_003529298.1 292493859 8918915 complement(4020397..4020858) 1 NC_013960.1 PFAM: protein of unknown function UPF0054; KEGG: noc:Noc_0239 hypothetical protein; hypothetical protein 4020858 8918915 Nhal_3899 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529298.1 4020397 R 472759 CDS YP_003529299.1 292493860 8918916 complement(4020855..4021847) 1 NC_013960.1 PFAM: PhoH family protein; KEGG: noc:Noc_0238 PhoH-like protein; PhoH family protein 4021847 8918916 Nhal_3900 Nitrosococcus halophilus Nc4 PhoH family protein YP_003529299.1 4020855 R 472759 CDS YP_003529300.1 292493861 8918917 complement(4022168..4023511) 1 NC_013960.1 KEGG: noc:Noc_0237 tRNA-i(6)A37 modification enzyme MiaB; TIGRFAM: tRNA-i(6)A37 thiotransferase enzyme MiaB; RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004 ; radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; tRNA-i(6)A37 thiotransferase protein MiaB 4023511 8918917 Nhal_3901 Nitrosococcus halophilus Nc4 tRNA-i(6)A37 thiotransferase protein MiaB YP_003529300.1 4022168 R 472759 CDS YP_003529301.1 292493862 8918918 4023713..4024387 1 NC_013960.1 TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: noc:Noc_0236 DNA repair protein RadC; DNA repair protein RadC 4024387 8918918 Nhal_3902 Nitrosococcus halophilus Nc4 DNA repair protein RadC YP_003529301.1 4023713 D 472759 CDS YP_003529302.1 292493863 8918919 complement(4024408..4024929) 1 NC_013960.1 PFAM: dihydrofolate reductase region; KEGG: noc:Noc_0235 dihydrofolate reductase; dihydrofolate reductase 4024929 8918919 Nhal_3903 Nitrosococcus halophilus Nc4 dihydrofolate reductase YP_003529302.1 4024408 R 472759 CDS YP_003529303.1 292493864 8918920 complement(4024940..4025734) 1 NC_013960.1 KEGG: noc:Noc_0234 thymidylate synthase; TIGRFAM: thymidylate synthase; PFAM: thymidylate synthase; thymidylate synthase 4025734 8918920 Nhal_3904 Nitrosococcus halophilus Nc4 thymidylate synthase YP_003529303.1 4024940 R 472759 CDS YP_003529304.1 292493865 8918921 complement(4025737..4026540) 1 NC_013960.1 TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; KEGG: noc:Noc_0233 prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase 4026540 8918921 Nhal_3905 Nitrosococcus halophilus Nc4 prolipoprotein diacylglyceryl transferase YP_003529304.1 4025737 R 472759 CDS YP_003529305.1 292493866 8918922 4026728..4028017 1 NC_013960.1 KEGG: noc:Noc_0232 hypothetical protein; hypothetical protein 4028017 8918922 Nhal_3906 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529305.1 4026728 D 472759 CDS YP_003529306.1 292493867 8918923 4028072..4028197 1 NC_013960.1 hypothetical protein 4028197 8918923 Nhal_3907 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529306.1 4028072 D 472759 CDS YP_003529307.1 292493868 8918924 4028185..4028448 1 NC_013960.1 KEGG: tcx:Tcr_0368 hypothetical protein; hypothetical protein 4028448 8918924 Nhal_3908 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529307.1 4028185 D 472759 CDS YP_003529308.1 292493869 8918925 4028735..4029505 1 NC_013960.1 KEGG: noc:Noc_0231 hypothetical protein; hypothetical protein 4029505 8918925 Nhal_3909 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529308.1 4028735 D 472759 CDS YP_003529309.1 292493870 8918927 4029959..4030249 1 NC_013960.1 PFAM: DNA polymerase beta domain protein region; KEGG: noc:Noc_1203 DNA polymerase, beta-like region; DNA polymerase beta domain-containing protein 4030249 8918927 Nhal_3911 Nitrosococcus halophilus Nc4 DNA polymerase beta domain-containing protein YP_003529309.1 4029959 D 472759 CDS YP_003529310.1 292493871 8918928 complement(4030422..4030730) 1 NC_013960.1 TIGRFAM: CRISPR-associated protein Cas2; KEGG: gsu:GSU1393 hypothetical protein; CRISPR-associated protein Cas2 4030730 8918928 Nhal_3912 Nitrosococcus halophilus Nc4 CRISPR-associated protein Cas2 YP_003529310.1 4030422 R 472759 CDS YP_003529311.1 292493872 8918930 complement(4031476..4031724) 1 NC_013960.1 PFAM: YcfA family protein; KEGG: gur:Gura_0355 hypothetical protein; YcfA family protein 4031724 8918930 Nhal_3914 Nitrosococcus halophilus Nc4 YcfA family protein YP_003529311.1 4031476 R 472759 CDS YP_003529312.1 292493873 8918931 complement(4031721..4031927) 1 NC_013960.1 KEGG: mca:MCA0653 hypothetical protein; hypothetical protein 4031927 8918931 Nhal_3915 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529312.1 4031721 R 472759 CDS YP_003529313.1 292493874 8918932 4031951..4032391 1 NC_013960.1 hypothetical protein 4032391 8918932 Nhal_3916 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529313.1 4031951 D 472759 CDS YP_003529314.1 292493875 8918933 4032458..4032610 1 NC_013960.1 PFAM: CopG domain protein DNA-binding domain protein; CopG domain-containing protein DNA-binding domain-containing protein 4032610 8918933 Nhal_3917 Nitrosococcus halophilus Nc4 CopG domain-containing protein DNA-binding domain-containing protein YP_003529314.1 4032458 D 472759 CDS YP_003529315.1 292493876 8918934 join(4032684..4033172,4033172..4033753) 1 NC_013960.1 KEGG: mch:Mchl_5622 transposase and inactivated derivatives-like protein; hypothetical protein 4033753 8918934 Nhal_3918 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529315.1 4032684 D 472759 CDS YP_003529316.1 292493877 8918935 complement(4034040..4034210) 1 NC_013960.1 hypothetical protein 4034210 8918935 Nhal_3919 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529316.1 4034040 R 472759 CDS YP_003529317.1 292493878 8918937 complement(4034608..4035696) 1 NC_013960.1 TIGRFAM: GTP-binding protein YchF; PFAM: protein of unknown function DUF933; GTP-binding protein HSR1-related; KEGG: noc:Noc_0517 translation-associated GTPase; GTP-binding protein YchF 4035696 8918937 Nhal_3920 Nitrosococcus halophilus Nc4 GTP-binding protein YchF YP_003529317.1 4034608 R 472759 CDS YP_003529318.1 292493879 8918938 complement(4035710..4036300) 1 NC_013960.1 KEGG: noc:Noc_0516 peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase 4036300 8918938 Nhal_3921 Nitrosococcus halophilus Nc4 peptidyl-tRNA hydrolase YP_003529318.1 4035710 R 472759 CDS YP_003529319.1 292493880 8918939 complement(4036311..4036946) 1 NC_013960.1 TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: noc:Noc_0515 ribosomal protein L25; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 4036946 8918939 Nhal_3922 Nitrosococcus halophilus Nc4 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 YP_003529319.1 4036311 R 472759 CDS YP_003529320.1 292493881 8918940 complement(4037044..4037979) 1 NC_013960.1 KEGG: noc:Noc_0514 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 4037979 8918940 Nhal_3923 Nitrosococcus halophilus Nc4 ribose-phosphate pyrophosphokinase YP_003529320.1 4037044 R 472759 CDS YP_003529321.1 292493882 8918942 complement(4038187..4039038) 1 NC_013960.1 KEGG: noc:Noc_0513 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein; 4-diphosphocytidyl-2C-methyl-D-erythritol kinase 4039038 8918942 Nhal_3924 Nitrosococcus halophilus Nc4 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YP_003529321.1 4038187 R 472759 CDS YP_003529322.1 292493883 8918943 complement(4039046..4039654) 1 NC_013960.1 TIGRFAM: outer membrane lipoprotein LolB; PFAM: outer membrane lipoprotein LolB; KEGG: noc:Noc_0512 outer membrane lipoprotein LolB; outer membrane lipoprotein LolB 4039654 8918943 Nhal_3925 Nitrosococcus halophilus Nc4 outer membrane lipoprotein LolB YP_003529322.1 4039046 R 472759 CDS YP_003529323.1 292493884 8918944 complement(4039651..4041387) 1 NC_013960.1 PFAM: hypothetical protein; TPR repeat-containing protein; KEGG: noc:Noc_0511 hypothetical protein; hypothetical protein 4041387 8918944 Nhal_3926 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529323.1 4039651 R 472759 CDS YP_003529324.1 292493885 8918945 4041654..4042916 1 NC_013960.1 KEGG: noc:Noc_0510 glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; glutamyl-tRNA reductase 4042916 8918945 Nhal_3927 Nitrosococcus halophilus Nc4 glutamyl-tRNA reductase YP_003529324.1 4041654 D 472759 CDS YP_003529325.1 292493886 8918946 4042929..4044020 1 NC_013960.1 TIGRFAM: peptide chain release factor 1; PFAM: class I peptide chain release factor; PCRF domain protein; KEGG: noc:Noc_0509 peptide chain release factor 1; peptide chain release factor 1 4044020 8918946 Nhal_3928 Nitrosococcus halophilus Nc4 peptide chain release factor 1 YP_003529325.1 4042929 D 472759 CDS YP_003529326.1 292493887 8918947 4044191..4044919 1 NC_013960.1 TIGRFAM: septum site-determining protein MinC; PFAM: septum formation inhibitor MinC; septum formation inhibitor MinC domain protein; KEGG: noc:Noc_0508 septum formation inhibitor MinC; septum site-determining protein MinC 4044919 8918947 Nhal_3929 Nitrosococcus halophilus Nc4 septum site-determining protein MinC YP_003529326.1 4044191 D 472759 CDS YP_003529327.1 292493888 8918948 4044957..4045766 1 NC_013960.1 TIGRFAM: septum site-determining protein MinD; PFAM: cobyrinic acid ac-diamide synthase; KEGG: noc:Noc_0507 septum site-determining protein MinD; septum site-determining protein MinD 4045766 8918948 Nhal_3930 Nitrosococcus halophilus Nc4 septum site-determining protein MinD YP_003529327.1 4044957 D 472759 CDS YP_003529328.1 292493889 8918949 4045773..4046078 1 NC_013960.1 TIGRFAM: cell division topological specificity factor MinE; PFAM: septum formation topological specificity factor MinE; KEGG: noc:Noc_0506 septum formation topological specificity factor MinE; cell division topological specificity factor MinE 4046078 8918949 Nhal_3931 Nitrosococcus halophilus Nc4 cell division topological specificity factor MinE YP_003529328.1 4045773 D 472759 CDS YP_003529329.1 292493890 8918950 complement(4046296..4046439) 1 NC_013960.1 hypothetical protein 4046439 8918950 Nhal_3932 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529329.1 4046296 R 472759 CDS YP_003529330.1 292493891 8918951 complement(4046557..4047843) 1 NC_013960.1 PFAM: HemY domain protein; SMART: Tetratricopeptide domain protein; KEGG: noc:Noc_0505 HemY-like; HemY domain-containing protein 4047843 8918951 Nhal_3933 Nitrosococcus halophilus Nc4 HemY domain-containing protein YP_003529330.1 4046557 R 472759 CDS YP_003529331.1 292493892 8918952 complement(4047840..4049459) 1 NC_013960.1 PFAM: protein of unknown function DUF513 hemX; KEGG: noc:Noc_0504 hypothetical protein; hypothetical protein 4049459 8918952 Nhal_3934 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529331.1 4047840 R 472759 CDS YP_003529332.1 292493893 8918953 complement(4049456..4050253) 1 NC_013960.1 PFAM: uroporphyrinogen III synthase HEM4; KEGG: noc:Noc_0503 uroporphyrinogen III synthase HEM4; uroporphyrinogen III synthase HEM4 4050253 8918953 Nhal_3935 Nitrosococcus halophilus Nc4 uroporphyrinogen III synthase HEM4 YP_003529332.1 4049456 R 472759 CDS YP_003529333.1 292493894 8918954 complement(4050246..4051178) 1 NC_013960.1 KEGG: noc:Noc_0502 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: porphobilinogen deaminase; porphobilinogen deaminase 4051178 8918954 Nhal_3936 Nitrosococcus halophilus Nc4 porphobilinogen deaminase YP_003529333.1 4050246 R 472759 CDS YP_003529334.1 292493895 8918955 4051379..4052779 1 NC_013960.1 TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: noc:Noc_0501 argininosuccinate lyase; argininosuccinate lyase 4052779 8918955 Nhal_3937 Nitrosococcus halophilus Nc4 argininosuccinate lyase YP_003529334.1 4051379 D 472759 CDS YP_003529335.1 292493896 8918956 complement(4052776..4053891) 1 NC_013960.1 TIGRFAM: glycine cleavage system protein T; PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; KEGG: noc:Noc_0500 glycine cleavage system protein T; glycine cleavage system protein T 4053891 8918956 Nhal_3938 Nitrosococcus halophilus Nc4 glycine cleavage system protein T YP_003529335.1 4052776 R 472759 CDS YP_003529336.1 292493897 8918957 4054076..4055194 1 NC_013960.1 KEGG: mca:MCA2343 protease DO; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; protease Do 4055194 8918957 Nhal_3939 Nitrosococcus halophilus Nc4 protease Do YP_003529336.1 4054076 D 472759 CDS YP_003529337.1 292493898 8918958 complement(4055228..4057612) 1 NC_013960.1 KEGG: noc:Noc_3068 sucrose synthase; TIGRFAM: sucrose synthase; PFAM: sucrose synthase; glycosyl transferase group 1; sucrose synthase 4057612 8918958 Nhal_3940 Nitrosococcus halophilus Nc4 sucrose synthase YP_003529337.1 4055228 R 472759 CDS YP_003529338.1 292493899 8918959 complement(4057612..4059771) 1 NC_013960.1 TIGRFAM: sucrose-phosphate synthase; HAD-superfamily hydrolase, subfamily IIB; PFAM: sucrose-6F-phosphate phosphohydrolase; glycosyl transferase group 1; haloacid dehalogenase type 3; KEGG: noc:Noc_3069 HAD family hydrolase; sucrose-phosphate synthase 4059771 8918959 Nhal_3941 Nitrosococcus halophilus Nc4 sucrose-phosphate synthase YP_003529338.1 4057612 R 472759 CDS YP_003529339.1 292493900 8918960 complement(4059771..4060685) 1 NC_013960.1 PFAM: PfkB domain protein; KEGG: noc:Noc_3070 PfkB family of carbohydrate kinase; PfkB domain-containing protein 4060685 8918960 Nhal_3942 Nitrosococcus halophilus Nc4 PfkB domain-containing protein YP_003529339.1 4059771 R 472759 CDS YP_003529340.1 292493901 8918961 complement(4060730..4062565) 1 NC_013960.1 TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II; KEGG: noc:Noc_3071 glucosamine-fructose-6-phosphate aminotransferase, isomerising; glucosamine/fructose-6-phosphate aminotransferase 4062565 8918961 Nhal_3943 Nitrosococcus halophilus Nc4 glucosamine/fructose-6-phosphate aminotransferase YP_003529340.1 4060730 R 472759 CDS YP_003529341.1 292493902 8918962 complement(4062599..4063972) 1 NC_013960.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: nucleotidyl transferase; transferase hexapeptide repeat containing protein; KEGG: noc:Noc_3072 UDP-N-acetylglucosamine pyrophosphorylase; UDP-N-acetylglucosamine pyrophosphorylase 4063972 8918962 Nhal_3944 Nitrosococcus halophilus Nc4 UDP-N-acetylglucosamine pyrophosphorylase YP_003529341.1 4062599 R 472759 CDS YP_003529342.1 292493903 8918963 complement(4064156..4064587) 1 NC_013960.1 TIGRFAM: ATP synthase F1 subunit epsilon; PFAM: H+transporting two-sector ATPase delta/subunit epsilon; KEGG: noc:Noc_3073 H+-transporting two-sector ATPase, delta/subunit epsilon; ATP synthase F1 subunit epsilon 4064587 8918963 Nhal_3945 Nitrosococcus halophilus Nc4 ATP synthase F1 subunit epsilon YP_003529342.1 4064156 R 472759 CDS YP_003529343.1 292493904 8918964 complement(4064612..4065988) 1 NC_013960.1 KEGG: noc:Noc_3074 F0F1 ATP synthase subunit beta; TIGRFAM: ATP synthase F1 subunit beta; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; SMART: ATPase AAA; ATP synthase F1 subunit beta 4065988 8918964 Nhal_3946 Nitrosococcus halophilus Nc4 ATP synthase F1 subunit beta YP_003529343.1 4064612 R 472759 CDS YP_003529344.1 292493905 8918965 complement(4066063..4066926) 1 NC_013960.1 TIGRFAM: ATP synthase F1 subunit gamma; PFAM: H+transporting two-sector ATPase subunit gamma; KEGG: noc:Noc_3075 sodium-transporting two-sector ATPase; ATP synthase F1 subunit gamma 4066926 8918965 Nhal_3947 Nitrosococcus halophilus Nc4 ATP synthase F1 subunit gamma YP_003529344.1 4066063 R 472759 CDS YP_003529345.1 292493906 8918966 complement(4066942..4068489) 1 NC_013960.1 KEGG: noc:Noc_3076 F0F1 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1 subunit alpha; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; ATP synthase F1 subunit alpha 4068489 8918966 Nhal_3948 Nitrosococcus halophilus Nc4 ATP synthase F1 subunit alpha YP_003529345.1 4066942 R 472759 CDS YP_003529346.1 292493907 8918967 complement(4068516..4069052) 1 NC_013960.1 TIGRFAM: ATP synthase F1 subunit delta; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: noc:Noc_3077 F0F1 ATP synthase subunit delta; ATP synthase F1 subunit delta 4069052 8918967 Nhal_3949 Nitrosococcus halophilus Nc4 ATP synthase F1 subunit delta YP_003529346.1 4068516 R 472759 CDS YP_003529347.1 292493908 8918968 complement(4069068..4069538) 1 NC_013960.1 TIGRFAM: ATP synthase F0 subunit beta; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: noc:Noc_3078 F0F1 ATP synthase subunit B; ATP synthase F0 subunit beta 4069538 8918968 Nhal_3950 Nitrosococcus halophilus Nc4 ATP synthase F0 subunit beta YP_003529347.1 4069068 R 472759 CDS YP_003529348.1 292493909 8918969 complement(4069588..4069872) 1 NC_013960.1 TIGRFAM: ATP synthase F0 C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: noc:Noc_3079 ATP synthase F0 C subunit; ATP synthase F0 subunit C 4069872 8918969 Nhal_3951 Nitrosococcus halophilus Nc4 ATP synthase F0 subunit C YP_003529348.1 4069588 R 472759 CDS YP_003529349.1 292493910 8918970 complement(4069934..4070737) 1 NC_013960.1 TIGRFAM: ATP synthase F0 subunit alpha; PFAM: H+transporting two-sector ATPase subunit alpha; KEGG: noc:Noc_3080 F0F1 ATP synthase subunit A; ATP synthase F0 subunit alpha 4070737 8918970 Nhal_3952 Nitrosococcus halophilus Nc4 ATP synthase F0 subunit alpha YP_003529349.1 4069934 R 472759 CDS YP_003529350.1 292493911 8918971 complement(4070801..4071172) 1 NC_013960.1 PFAM: ATP synthase I chain; KEGG: noc:Noc_3081 hypothetical protein; ATP synthase I chain 4071172 8918971 Nhal_3953 Nitrosococcus halophilus Nc4 ATP synthase I chain YP_003529350.1 4070801 R 472759 CDS YP_003529351.1 292493912 8918972 complement(4071405..4072274) 1 NC_013960.1 KEGG: noc:Noc_3082 ParB-like partition protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; parB-like partition protein 4072274 8918972 Nhal_3954 Nitrosococcus halophilus Nc4 parB-like partition protein YP_003529351.1 4071405 R 472759 CDS YP_003529352.1 292493913 8918973 complement(4072282..4073076) 1 NC_013960.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: noc:Noc_3083 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase 4073076 8918973 Nhal_3955 Nitrosococcus halophilus Nc4 cobyrinic acid ac-diamide synthase YP_003529352.1 4072282 R 472759 CDS YP_003529353.1 292493914 8918974 complement(4073078..4073713) 1 NC_013960.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: noc:Noc_3084 glucose inhibited division protein; methyltransferase GidB 4073713 8918974 Nhal_3956 Nitrosococcus halophilus Nc4 methyltransferase GidB YP_003529353.1 4073078 R 472759 CDS YP_003529354.1 292493915 8918975 complement(4073779..4075668) 1 NC_013960.1 TIGRFAM: glucose inhibited division protein A; PFAM: glucose-inhibited division protein A; FAD dependent oxidoreductase; KEGG: noc:Noc_3085 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; glucose inhibited division protein A 4075668 8918975 Nhal_3957 Nitrosococcus halophilus Nc4 glucose inhibited division protein A YP_003529354.1 4073779 R 472759 CDS YP_003529355.1 292493916 8918976 complement(4075672..4077048) 1 NC_013960.1 TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: noc:Noc_3086 tRNA modification GTPase TrmE; tRNA modification GTPase TrmE 4077048 8918976 Nhal_3958 Nitrosococcus halophilus Nc4 tRNA modification GTPase TrmE YP_003529355.1 4075672 R 472759 CDS YP_003529356.1 292493917 8918977 complement(4077012..4078676) 1 NC_013960.1 PFAM: hypothetical protein; KEGG: noc:Noc_3087 hypothetical protein; hypothetical protein 4078676 8918977 Nhal_3959 Nitrosococcus halophilus Nc4 hypothetical protein YP_003529356.1 4077012 R 472759 CDS YP_003529357.1 292493918 8918978 complement(4078854..4079213) 1 NC_013960.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: noc:Noc_3088 ribonuclease P protein; ribonuclease P protein component 4079213 8918978 Nhal_3960 Nitrosococcus halophilus Nc4 ribonuclease P protein component YP_003529357.1 4078854 R 472759 CDS YP_003529358.1 292493919 8918979 complement(4079243..4079377) 1 NC_013960.1 TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: noc:Noc_3089 ribosomal protein L34; 50S ribosomal protein L34 4079377 8918979 Nhal_3961 Nitrosococcus halophilus Nc4 50S ribosomal protein L34 YP_003529358.1 4079243 R 472759 CDS