-- dump date 20111121_013533 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 472759000001 SEQ_END SEQ_END NC_013958.1 65833 65833 DR NC_013958.1; contig end 65833..65833 Nitrosococcus halophilus Nc4 472759000002 SEQ_END SEQ_END NC_013960.1 4079427 4079427 DR NC_013960.1; contig end 4079427..4079427 Nitrosococcus halophilus Nc4 YP_003522562.1 CDS Nhal_3962 NC_013958.1 154 3549 R PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicase; KEGG: rfr:Rfer_1062 type III restriction enzyme, res subunit; type III restriction protein res subunit complement(154..3549) Nitrosococcus halophilus Nc4 8893779 YP_003522563.1 CDS Nhal_3963 NC_013958.1 3565 4815 R PFAM: restriction modification system DNA specificity domain; KEGG: rpt:Rpal_1502 restriction modification system DNA specificity domain; restriction modification system DNA specificity domain protein complement(3565..4815) Nitrosococcus halophilus Nc4 8893708 YP_003522564.1 CDS Nhal_3964 NC_013958.1 4812 6272 R PFAM: N-6 DNA methylase; KEGG: gur:Gura_2095 N-6 DNA methylase; N-6 DNA methylase complement(4812..6272) Nitrosococcus halophilus Nc4 8893709 YP_003522565.1 CDS Nhal_3965 NC_013958.1 6627 6956 D TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; KEGG: mrd:Mrad2831_6456 addiction module killer protein; addiction module killer protein 6627..6956 Nitrosococcus halophilus Nc4 8893710 YP_003522566.1 CDS Nhal_3966 NC_013958.1 6960 7277 D KEGG: noc:Noc_0674 hypothetical protein; hypothetical protein 6960..7277 Nitrosococcus halophilus Nc4 8893711 YP_003522567.1 CDS Nhal_3967 NC_013958.1 7450 8556 R PFAM: membrane-bound metal-dependent hydrolase; KEGG: noc:Noc_A0032 membrane-bound metal-dependent hydrolase; membrane-bound metal-dependent hydrolase complement(7450..8556) Nitrosococcus halophilus Nc4 8893712 YP_003522568.1 CDS Nhal_3968 NC_013958.1 8612 8836 R KEGG: afr:AFE_2792 hypothetical protein; hypothetical protein complement(8612..8836) Nitrosococcus halophilus Nc4 8893713 YP_003522569.1 CDS Nhal_3969 NC_013958.1 8836 9180 R KEGG: mex:Mext_2358 hypothetical protein; hypothetical protein complement(8836..9180) Nitrosococcus halophilus Nc4 8893714 YP_003522570.1 CDS Nhal_3970 NC_013958.1 9182 9949 R KEGG: noc:Noc_A0035 hypothetical protein; hypothetical protein complement(9182..9949) Nitrosococcus halophilus Nc4 8893715 YP_003522571.1 CDS Nhal_3971 NC_013958.1 9984 10811 R KEGG: noc:Noc_A0036 hypothetical protein; hypothetical protein complement(9984..10811) Nitrosococcus halophilus Nc4 8893716 YP_003522572.1 CDS Nhal_3972 NC_013958.1 10816 11052 R KEGG: noc:Noc_A0037 hypothetical protein; hypothetical protein complement(10816..11052) Nitrosococcus halophilus Nc4 8893717 YP_003522573.1 CDS Nhal_3973 NC_013958.1 11340 11477 D hypothetical protein 11340..11477 Nitrosococcus halophilus Nc4 8893718 YP_003522574.1 CDS Nhal_3974 NC_013958.1 11578 11808 D hypothetical protein 11578..11808 Nitrosococcus halophilus Nc4 8893719 YP_003522575.1 CDS Nhal_3975 NC_013958.1 12107 12874 R KEGG: noc:Noc_A0039 hypothetical protein; hypothetical protein complement(12107..12874) Nitrosococcus halophilus Nc4 8893720 YP_003522576.1 CDS Nhal_3976 NC_013958.1 13265 13555 R KEGG: noc:Noc_A0040 hypothetical protein; hypothetical protein complement(13265..13555) Nitrosococcus halophilus Nc4 8893721 YP_003522577.1 CDS Nhal_3977 NC_013958.1 13715 13939 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: noc:Noc_1652 XRE family transcriptional regulator; helix-turn-helix domain protein complement(13715..13939) Nitrosococcus halophilus Nc4 8893722 YP_003522578.1 CDS Nhal_3979 NC_013958.1 14221 14433 R hypothetical protein complement(14221..14433) Nitrosococcus halophilus Nc4 8893775 YP_003522579.1 CDS Nhal_3980 NC_013958.1 14512 15252 D KEGG: ajs:Ajs_4307 hypothetical protein; hypothetical protein 14512..15252 Nitrosococcus halophilus Nc4 8893724 YP_003522580.1 CDS Nhal_3981 NC_013958.1 15334 15849 R PFAM: GCN5-related N-acetyltransferase; KEGG: rpa:RPA4135 GCN5-related N-acetyltransferase; GCN5-related N-acetyltransferase complement(15334..15849) Nitrosococcus halophilus Nc4 8893725 YP_003522581.1 CDS Nhal_3982 NC_013958.1 15846 16118 R PFAM: Protein of unknown function DUF1778; KEGG: rpe:RPE_1144 hypothetical protein; hypothetical protein complement(15846..16118) Nitrosococcus halophilus Nc4 8893726 YP_003522582.1 CDS Nhal_3983 NC_013958.1 16175 16324 D KEGG: pfs:PFLU5282A putative DNA invertase; hypothetical protein 16175..16324 Nitrosococcus halophilus Nc4 8893727 YP_003522583.1 CDS Nhal_3984 NC_013958.1 16848 17231 D KEGG: prw:PsycPRwf_1938 IS1 transposase; hypothetical protein 16848..17231 Nitrosococcus halophilus Nc4 8893728 YP_003522584.1 CDS Nhal_3985 NC_013958.1 17255 17581 D PFAM: IS1 transposase; KEGG: sdy:SDY_0314 iso-IS1 ORF2; IS1 transposase 17255..17581 Nitrosococcus halophilus Nc4 8893729 YP_003522585.1 CDS Nhal_3986 NC_013958.1 17698 18549 D PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: gbm:Gbem_0310 hypothetical protein; Rubredoxin-type Fe(Cys)4 protein 17698..18549 Nitrosococcus halophilus Nc4 8893730 YP_003522586.1 CDS Nhal_3987 NC_013958.1 18632 19132 R PFAM: Gp157 family protein; KEGG: noc:Noc_A0042 siphovirus GP157; Gp157 family protein complement(18632..19132) Nitrosococcus halophilus Nc4 8893731 YP_003522587.1 CDS Nhal_3988 NC_013958.1 19189 20157 R KEGG: noc:Noc_A0043 hypothetical protein; hypothetical protein complement(19189..20157) Nitrosococcus halophilus Nc4 8893732 YP_003522588.1 CDS Nhal_3989 NC_013958.1 20241 21041 R PFAM: protein of unknown function DUF932; KEGG: noc:Noc_A0001 hypothetical protein; hypothetical protein complement(20241..21041) Nitrosococcus halophilus Nc4 8893733 YP_003522589.1 CDS Nhal_3990 NC_013958.1 21119 21625 R KEGG: noc:Noc_A0002 hypothetical protein; hypothetical protein complement(21119..21625) Nitrosococcus halophilus Nc4 8893734 YP_003522590.1 CDS Nhal_3991 NC_013958.1 21704 21913 R hypothetical protein complement(21704..21913) Nitrosococcus halophilus Nc4 8893735 YP_003522591.1 CDS Nhal_3992 NC_013958.1 22155 22523 R PFAM: HicB family protein; KEGG: noc:Noc_A0003 HicB; HicB family protein complement(22155..22523) Nitrosococcus halophilus Nc4 8893736 YP_003522592.1 CDS Nhal_3994 NC_013958.1 22783 23403 R KEGG: noc:Noc_A0005 hypothetical protein; hypothetical protein complement(22783..23403) Nitrosococcus halophilus Nc4 8893776 YP_003522593.1 CDS Nhal_3995 NC_013958.1 23576 24178 R KEGG: noc:Noc_A0005 hypothetical protein; hypothetical protein complement(23576..24178) Nitrosococcus halophilus Nc4 8893738 YP_003522594.1 CDS Nhal_3996 NC_013958.1 24825 25013 D KEGG: noc:Noc_A0006 hypothetical protein; hypothetical protein 24825..25013 Nitrosococcus halophilus Nc4 8893739 YP_003522595.1 CDS Nhal_3997 NC_013958.1 25010 25531 D KEGG: noc:Noc_A0007 putative type-4 fimbrial pilin related signal peptide protein; putative type-4 fimbrial pilin related signal peptide protein 25010..25531 Nitrosococcus halophilus Nc4 8893740 YP_003522596.1 CDS Nhal_3998 NC_013958.1 25583 26188 R KEGG: cps:CPS_4812 hypothetical protein; aspartyl protease-like protein complement(25583..26188) Nitrosococcus halophilus Nc4 8893741 YP_003522597.1 CDS Nhal_3999 NC_013958.1 26440 27630 R PFAM: Endonuclease/exonuclease/phosphatase; SMART: Deoxyribonuclease I-like; KEGG: noc:Noc_A0008 endonuclease/exonuclease/phosphatase; Endonuclease/exonuclease/phosphatase complement(26440..27630) Nitrosococcus halophilus Nc4 8893742 YP_003522598.1 CDS Nhal_4000 NC_013958.1 27931 28329 D KEGG: noc:Noc_A0009 hypothetical protein; hypothetical protein 27931..28329 Nitrosococcus halophilus Nc4 8893743 YP_003522599.1 CDS Nhal_4001 NC_013958.1 28393 29208 D PFAM: restriction endonuclease; DNA topoisomerase type IA zn finger domain protein; KEGG: noc:Noc_A0010 restriction endonuclease; restriction endonuclease 28393..29208 Nitrosococcus halophilus Nc4 8893744 YP_003522600.1 CDS Nhal_4002 NC_013958.1 29268 29579 R hypothetical protein complement(29268..29579) Nitrosococcus halophilus Nc4 8893745 YP_003522601.1 CDS Nhal_4003 NC_013958.1 29548 30222 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: glo:Glov_3684 cobyrinic acid ac-diamide synthase; Cobyrinic acid ac-diamide synthase complement(29548..30222) Nitrosococcus halophilus Nc4 8893746 YP_003522602.1 CDS Nhal_4004 NC_013958.1 30452 31225 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: noc:Noc_A0013 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase 30452..31225 Nitrosococcus halophilus Nc4 8893747 YP_003522603.1 CDS Nhal_4005 NC_013958.1 31218 32072 D KEGG: noc:Noc_A0014 ParB-like partition protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; parB-like partition protein 31218..32072 Nitrosococcus halophilus Nc4 8893748 YP_003522604.1 CDS Nhal_4006 NC_013958.1 32224 32463 R hypothetical protein complement(32224..32463) Nitrosococcus halophilus Nc4 8893749 YP_003522605.1 CDS Nhal_4007 NC_013958.1 32806 33738 D PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: noc:Noc_0687 phage integrase; integrase family protein 32806..33738 Nitrosococcus halophilus Nc4 8893750 YP_003522606.1 CDS Nhal_4008 NC_013958.1 33820 34125 R KEGG: noc:Noc_A0016 hypothetical protein; hypothetical protein complement(33820..34125) Nitrosococcus halophilus Nc4 8893751 YP_003522607.1 CDS Nhal_4009 NC_013958.1 34162 35157 R PFAM: integrase domain protein SAM domain protein; integrase family protein; KEGG: noc:Noc_1698 phage integrase; integrase domain protein SAM domain protein complement(34162..35157) Nitrosococcus halophilus Nc4 8893752 YP_003522608.1 CDS Nhal_4010 NC_013958.1 35348 36019 R hypothetical protein complement(35348..36019) Nitrosococcus halophilus Nc4 8893753 YP_003522609.1 CDS Nhal_4011 NC_013958.1 36131 36373 R hypothetical protein complement(36131..36373) Nitrosococcus halophilus Nc4 8893754 YP_003522610.1 CDS Nhal_4012 NC_013958.1 36706 36864 R hypothetical protein complement(36706..36864) Nitrosococcus halophilus Nc4 8893755 YP_003522611.1 CDS Nhal_4013 NC_013958.1 37966 38130 D hypothetical protein 37966..38130 Nitrosococcus halophilus Nc4 8893756 YP_003522612.1 CDS Nhal_4014 NC_013958.1 38412 39467 D KEGG: noc:Noc_2766 hypothetical protein; hypothetical protein 38412..39467 Nitrosococcus halophilus Nc4 8893757 YP_003522613.1 CDS Nhal_4015 NC_013958.1 39901 40995 D PFAM: restriction endonuclease; restriction endonuclease 39901..40995 Nitrosococcus halophilus Nc4 8893758 YP_003522614.1 CDS Nhal_4016 NC_013958.1 40985 41107 D hypothetical protein 40985..41107 Nitrosococcus halophilus Nc4 8893759 YP_003522615.1 CDS Nhal_4017 NC_013958.1 41506 42078 D KEGG: rec:RHECIAT_CH0002802 hypothetical protein; hypothetical protein 41506..42078 Nitrosococcus halophilus Nc4 8893760 YP_003522616.1 CDS Nhal_4018 NC_013958.1 42178 42963 D KEGG: sde:Sde_0715 nucleotide-binding protein; nucleotide-binding protein containing TIR -like protein domain-like protein 42178..42963 Nitrosococcus halophilus Nc4 8893761 YP_003522617.1 CDS Nhal_4019 NC_013958.1 43054 43716 D hypothetical protein 43054..43716 Nitrosococcus halophilus Nc4 8893762 YP_003522618.1 CDS Nhal_4020 NC_013958.1 43742 44806 D KEGG: bja:blr0077 hypothetical protein; hypothetical protein 43742..44806 Nitrosococcus halophilus Nc4 8893763 YP_003522619.1 CDS Nhal_4021 NC_013958.1 45148 45738 D KEGG: vei:Veis_1949 hypothetical protein; hypothetical protein 45148..45738 Nitrosococcus halophilus Nc4 8893764 YP_003522620.1 CDS Nhal_4022 NC_013958.1 46123 47124 R PFAM: peptidase M28; peptidase M20; KEGG: gbm:Gbem_0054 peptidase M28; peptidase M28 complement(46123..47124) Nitrosococcus halophilus Nc4 8893765 YP_003522621.1 CDS Nhal_4024 NC_013958.1 47353 50169 R PFAM: helicase domain protein; SNF2-related protein; DEAD/DEAH box helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase domain protein; KEGG: spc:Sputcn32_3376 helicase domain-containing protein; helicase domain protein complement(47353..50169) Nitrosococcus halophilus Nc4 8893777 YP_003522622.1 CDS Nhal_4025 NC_013958.1 50339 51913 R KEGG: pst:PSPTO_0021 hypothetical protein; hypothetical protein complement(50339..51913) Nitrosococcus halophilus Nc4 8893767 YP_003522623.1 CDS Nhal_4026 NC_013958.1 52063 52299 R KEGG: ppd:Ppro_0225 hypothetical protein; hypothetical protein complement(52063..52299) Nitrosococcus halophilus Nc4 8893768 YP_003522624.1 CDS Nhal_4027 NC_013958.1 52431 53282 R hypothetical protein complement(52431..53282) Nitrosococcus halophilus Nc4 8893769 YP_003522625.1 CDS Nhal_4028 NC_013958.1 53869 53997 D hypothetical protein 53869..53997 Nitrosococcus halophilus Nc4 8893770 YP_003522626.1 CDS Nhal_4029 NC_013958.1 54085 54213 R hypothetical protein complement(54085..54213) Nitrosococcus halophilus Nc4 8893771 YP_003522627.1 CDS Nhal_4031 NC_013958.1 54722 58528 D KEGG: vei:Veis_3661 hypothetical protein; hypothetical protein 54722..58528 Nitrosococcus halophilus Nc4 8893778 YP_003522628.1 CDS Nhal_4032 NC_013958.1 58600 59106 D KEGG: mms:mma_2523 hypothetical protein; hypothetical protein 58600..59106 Nitrosococcus halophilus Nc4 8893773 YP_003522629.1 CDS Nhal_4033 NC_013958.1 59355 65549 R KEGG: pap:PSPA7_3067 hypothetical protein; hypothetical protein complement(59355..65549) Nitrosococcus halophilus Nc4 8893774 YP_003525610.1 CDS Nhal_0001 NC_013960.1 244 1596 D KEGG: noc:Noc_0001 chromosomal replication initiator protein, DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: replication initiation factor DnaA; ATPase AAA; chromosomal replication initiator protein DnaA 244..1596 Nitrosococcus halophilus Nc4 8918980 YP_003525611.1 CDS Nhal_0002 NC_013960.1 1893 2996 D KEGG: noc:Noc_0002 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III subunit beta; PFAM: DNA polymerase III beta chain; SMART: DNA polymerase III beta chain; DNA polymerase III subunit beta 1893..2996 Nitrosococcus halophilus Nc4 8914966 YP_003525612.1 CDS Nhal_0003 NC_013960.1 3055 4143 D TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: noc:Noc_0018 RecF protein; DNA replication and repair protein RecF 3055..4143 Nitrosococcus halophilus Nc4 8914967 YP_003525613.1 CDS Nhal_0004 NC_013960.1 4168 6585 D KEGG: noc:Noc_0019 DNA gyrase subunit beta; TIGRFAM: DNA gyrase subunit beta; PFAM: DNA topoisomerase type IIsubunit alpha B region 2 domain protein; DNA gyrase subunit B domain protein; TOPRIM domain protein; ATP-binding region ATPase domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; DNA gyrase subunit beta 4168..6585 Nitrosococcus halophilus Nc4 8914968 YP_003525614.1 CDS Nhal_0005 NC_013960.1 6687 8009 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mca:MCA1918 NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(6687..8009) Nitrosococcus halophilus Nc4 8914969 YP_003525615.1 CDS Nhal_0006 NC_013960.1 8150 9562 D PFAM: dihydropteroate synthase DHPS; KEGG: mca:MCA1245 pterin-binding domain-containing protein; dihydropteroate synthase DHPS 8150..9562 Nitrosococcus halophilus Nc4 8914970 YP_003525616.1 CDS Nhal_0007 NC_013960.1 9549 10133 D PFAM: protein of unknown function DUF447; KEGG: mfa:Mfla_1580 hypothetical protein; hypothetical protein 9549..10133 Nitrosococcus halophilus Nc4 8914971 YP_003525617.1 CDS Nhal_0008 NC_013960.1 10130 10810 D PFAM: protein of unknown function DUF556; KEGG: noc:Noc_0020 hypothetical protein; hypothetical protein 10130..10810 Nitrosococcus halophilus Nc4 8914972 YP_003525618.1 CDS Nhal_0009 NC_013960.1 10929 12113 R KEGG: nmu:Nmul_A1535 hypothetical protein; hypothetical protein complement(10929..12113) Nitrosococcus halophilus Nc4 8914973 YP_003525619.1 CDS Nhal_0010 NC_013960.1 12577 14280 D PFAM: multicopper oxidase type 3; multicopper oxidase type 1; multicopper oxidase type 2; KEGG: noc:Noc_2506 multicopper oxidase type 3; multicopper oxidase type 3 12577..14280 Nitrosococcus halophilus Nc4 8914974 YP_003525620.1 CDS Nhal_0011 NC_013960.1 14406 15413 R PFAM: inositol phosphatase/fructose-16-bisphosphatase; KEGG: noc:Noc_0021 fructose-1,6-bisphosphatase; inositol phosphatase/fructose-16-bisphosphatase complement(14406..15413) Nitrosococcus halophilus Nc4 8914975 YP_003525621.1 CDS Nhal_0012 NC_013960.1 15773 16597 R KEGG: noc:Noc_0022 formylmethanofuran dehydrogenase; TIGRFAM: formylmethanofuran dehydrogenase subunit C; PFAM: glutamate synthase subunit alpha domain protein; formylmethanofuran dehydrogenase subunit C complement(15773..16597) Nitrosococcus halophilus Nc4 8914976 YP_003525622.1 CDS Nhal_0013 NC_013960.1 16689 17585 R KEGG: mca:MCA2858 tetrahydromethanopterin formyltransferase; TIGRFAM: formylmethanofuran/tetrahydromethanopterin N-formyltransferase; PFAM: formylmethanofuran: tetrahydromethanopterin formyltransferase (Ftr); formylmethanofuran--tetrahydromethanopterin formyltransferase complement(16689..17585) Nitrosococcus halophilus Nc4 8914977 YP_003525623.1 CDS Nhal_0014 NC_013960.1 17582 19249 R TIGRFAM: formylmethanofuran dehydrogenase subunit A; PFAM: amidohydrolase; KEGG: noc:Noc_0024 DNA/RNA non-specific endonuclease; formylmethanofuran dehydrogenase subunit A complement(17582..19249) Nitrosococcus halophilus Nc4 8914978 YP_003525624.1 CDS Nhal_0015 NC_013960.1 19284 20561 R TIGRFAM: formylmethanofuran dehydrogenase subunit B; KEGG: noc:Noc_0025 formylmethanofuran dehydrogenase; formylmethanofuran dehydrogenase subunit B complement(19284..20561) Nitrosococcus halophilus Nc4 8914979 YP_003525625.1 CDS Nhal_0016 NC_013960.1 20570 20947 R PFAM: transcriptional coactivator/pterin dehydratase; KEGG: msl:Msil_2406 transcriptional coactivator/pterin dehydratase; transcriptional coactivator/pterin dehydratase complement(20570..20947) Nitrosococcus halophilus Nc4 8914980 YP_003525626.1 CDS Nhal_0017 NC_013960.1 21012 21623 R PFAM: sporulation domain protein; KEGG: noc:Noc_0026 hypothetical protein; sporulation domain-containing protein complement(21012..21623) Nitrosococcus halophilus Nc4 8914981 YP_003525627.1 CDS Nhal_0018 NC_013960.1 21627 23384 R KEGG: noc:Noc_0027 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase; arginyl-tRNA synthetase complement(21627..23384) Nitrosococcus halophilus Nc4 8914982 YP_003525628.1 CDS Nhal_0019 NC_013960.1 23489 25702 R KEGG: noc:Noc_0028 primosome assembly protein PriA; TIGRFAM: primosomal protein N'; PFAM: DEAD/DEAH box helicase domain protein; helicase; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase; primosomal protein N' complement(23489..25702) Nitrosococcus halophilus Nc4 8914983 YP_003525629.1 CDS Nhal_0020 NC_013960.1 25798 26358 R TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain protein; KEGG: noc:Noc_0029 DJ-1; DJ-1 family protein complement(25798..26358) Nitrosococcus halophilus Nc4 8914984 YP_003525630.1 CDS Nhal_0021 NC_013960.1 26481 27794 R KEGG: noc:Noc_0030 peptidase S41A; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; carboxyl-terminal protease complement(26481..27794) Nitrosococcus halophilus Nc4 8914985 YP_003525631.1 CDS Nhal_0023 NC_013960.1 28315 29868 R TIGRFAM: phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; PFAM: BPG-independent PGAM domain protein; metalloenzyme domain protein; KEGG: noc:Noc_0031 phosphoglyceromutase; phosphoglycerate mutase complement(28315..29868) Nitrosococcus halophilus Nc4 8914987 YP_003525632.1 CDS Nhal_0024 NC_013960.1 30657 31388 D PFAM: rhodanese; SMART: Rhodanese domain protein; KEGG: noc:Noc_0032 rhodanese-like protein; rhodanese 30657..31388 Nitrosococcus halophilus Nc4 8914988 YP_003525633.1 CDS Nhal_0025 NC_013960.1 31392 31649 D TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: noc:Noc_0033 glutaredoxin GrxC; glutaredoxin 3 31392..31649 Nitrosococcus halophilus Nc4 8914989 YP_003525634.1 CDS Nhal_0026 NC_013960.1 31710 32213 D TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB; KEGG: noc:Noc_0034 preprotein translocase subunit SecB; protein-export protein SecB 31710..32213 Nitrosococcus halophilus Nc4 8914990 YP_003525635.1 CDS Nhal_0027 NC_013960.1 32236 33258 D PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: noc:Noc_0035 glycerol-3-phosphate dehydrogenase (NAD(P)+); glycerol-3-phosphate dehydrogenase (NAD(P)(+)) 32236..33258 Nitrosococcus halophilus Nc4 8914991 YP_003525636.1 CDS Nhal_0028 NC_013960.1 33276 34238 D KEGG: noc:Noc_0036 hypothetical protein; hypothetical protein 33276..34238 Nitrosococcus halophilus Nc4 8914992 YP_003525637.1 CDS Nhal_0029 NC_013960.1 34233 35420 R PFAM: protein of unknown function DUF185; KEGG: noc:Noc_0037 hypothetical protein; hypothetical protein complement(34233..35420) Nitrosococcus halophilus Nc4 8914993 YP_003525638.1 CDS Nhal_0030 NC_013960.1 35517 36005 R TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: noc:Noc_0038 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(35517..36005) Nitrosococcus halophilus Nc4 8914994 YP_003525639.1 CDS Nhal_0031 NC_013960.1 36011 36382 R TIGRFAM: dihydroneopterin aldolase; PFAM: dihydroneopterin aldolase; KEGG: noc:Noc_0039 dihydroneopterin aldolase family protein; dihydroneopterin aldolase complement(36011..36382) Nitrosococcus halophilus Nc4 8914995 YP_003525640.1 CDS Nhal_0032 NC_013960.1 36465 37070 D PFAM: protein of unknown function DUF205; KEGG: noc:Noc_0040 hypothetical protein; hypothetical protein 36465..37070 Nitrosococcus halophilus Nc4 8914996 YP_003525641.1 CDS Nhal_0033 NC_013960.1 37081 38088 R KEGG: noc:Noc_0041 O-sialoglycoprotein endopeptidase; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease; metalloendopeptidase, glycoprotease family complement(37081..38088) Nitrosococcus halophilus Nc4 8914997 YP_003525642.1 CDS Nhal_0034 NC_013960.1 38360 38575 D TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; KEGG: noc:Noc_0042 ribosomal protein S21; 30S ribosomal protein S21 38360..38575 Nitrosococcus halophilus Nc4 8914998 YP_003525643.1 CDS Nhal_0035 NC_013960.1 38615 39085 D KEGG: noc:Noc_0043 hypothetical protein; hypothetical protein 38615..39085 Nitrosococcus halophilus Nc4 8914999 YP_003525644.1 CDS Nhal_0036 NC_013960.1 39193 40908 D KEGG: noc:Noc_0044 DNA primase; TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase DnaG DnaB-binding; SMART: zinc finger CHC2-family protein; DNA primase DnaG DnaB-binding; Toprim sub domain protein; DNA primase 39193..40908 Nitrosococcus halophilus Nc4 8915000 YP_003525645.1 CDS Nhal_0037 NC_013960.1 41043 42851 D TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 non-essential domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 1.1 domain protein; sigma-70 region 4 domain protein; KEGG: noc:Noc_0045 hypothetical protein; RNA polymerase sigma factor RpoD 41043..42851 Nitrosococcus halophilus Nc4 8915001 YP_003525646.1 CDS Nhal_0038 NC_013960.1 43607 43987 D hypothetical protein 43607..43987 Nitrosococcus halophilus Nc4 8915003 YP_003525647.1 CDS Nhal_0039 NC_013960.1 44156 44359 R KEGG: mpt:Mpe_B0143 nuclease; nuclease complement(44156..44359) Nitrosococcus halophilus Nc4 8915004 YP_003525648.1 CDS Nhal_0040 NC_013960.1 45124 45558 D KEGG: tau:Tola_2854 transcriptional regulator, XRE family; hypothetical protein 45124..45558 Nitrosococcus halophilus Nc4 8915005 YP_003525649.1 CDS Nhal_0041 NC_013960.1 45562 46086 D KEGG: tau:Tola_2853 hypothetical protein; hypothetical protein 45562..46086 Nitrosococcus halophilus Nc4 8915006 YP_003525650.1 CDS Nhal_0042 NC_013960.1 46354 48051 R PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: noc:Noc_3064 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(46354..48051) Nitrosococcus halophilus Nc4 8915007 YP_003525651.1 CDS Nhal_0043 NC_013960.1 48447 49853 R PFAM: amino acid permease-associated region; KEGG: noc:Noc_3063 amino acid permease-associated region; amino acid permease-associated protein complement(48447..49853) Nitrosococcus halophilus Nc4 8915008 YP_003525652.1 CDS Nhal_0044 NC_013960.1 49932 51530 R PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: maq:Maqu_3453 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(49932..51530) Nitrosococcus halophilus Nc4 8915009 YP_003525653.1 CDS Nhal_0045 NC_013960.1 52257 52469 R KEGG: noc:Noc_3062 hypothetical protein; hypothetical protein complement(52257..52469) Nitrosococcus halophilus Nc4 8915010 YP_003525654.1 CDS Nhal_0046 NC_013960.1 52651 52998 D PFAM: pentapeptide repeat protein; KEGG: noc:Noc_3061 pentapeptide repeat-containing protein; pentapeptide repeat-containing protein 52651..52998 Nitrosococcus halophilus Nc4 8915011 YP_003525655.1 CDS Nhal_0047 NC_013960.1 52995 53747 R TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: noc:Noc_3060 sec-independent periplasmic protein translocase, TatC; Sec-independent protein translocase, TatC subunit complement(52995..53747) Nitrosococcus halophilus Nc4 8915012 YP_003525656.1 CDS Nhal_0048 NC_013960.1 53734 54045 R TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: noc:Noc_3059 twin-arginine translocation protein TatB; twin-arginine translocation proteinsubunit TatB complement(53734..54045) Nitrosococcus halophilus Nc4 8915013 YP_003525657.1 CDS Nhal_0049 NC_013960.1 54065 54340 R TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: noc:Noc_3058 twin-arginine translocation protein TatA/E; twin-arginine translocation protein, TatA/E family subunit complement(54065..54340) Nitrosococcus halophilus Nc4 8915014 YP_003525658.1 CDS Nhal_0050 NC_013960.1 54422 54763 R PFAM: histidine triad (HIT) protein; KEGG: noc:Noc_3057 histidine triad (HIT) protein; histidine triad (HIT) protein complement(54422..54763) Nitrosococcus halophilus Nc4 8915015 YP_003525659.1 CDS Nhal_0051 NC_013960.1 54756 55088 R TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: noc:Noc_3056 phosphoribosyl-ATP pyrophosphohydrolase; phosphoribosyl-ATP diphosphatase complement(54756..55088) Nitrosococcus halophilus Nc4 8915016 YP_003525660.1 CDS Nhal_0052 NC_013960.1 55085 55477 R PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: noc:Noc_3055 phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-AMP cyclohydrolase complement(55085..55477) Nitrosococcus halophilus Nc4 8915017 YP_003525661.1 CDS Nhal_0053 NC_013960.1 55480 56253 R TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; KEGG: noc:Noc_3054 imidazole glycerol phosphate synthase subunit HisF; imidazoleglycerol phosphate synthase, cyclase subunit complement(55480..56253) Nitrosococcus halophilus Nc4 8915018 YP_003525662.1 CDS Nhal_0054 NC_013960.1 56263 57003 R KEGG: noc:Noc_3053 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase complement(56263..57003) Nitrosococcus halophilus Nc4 8915019 YP_003525663.1 CDS Nhal_0055 NC_013960.1 57059 57688 R TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; KEGG: noc:Noc_3052 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit complement(57059..57688) Nitrosococcus halophilus Nc4 8915020 YP_003525664.1 CDS Nhal_0056 NC_013960.1 57710 58303 R PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: noc:Noc_3051 imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase complement(57710..58303) Nitrosococcus halophilus Nc4 8915021 YP_003525665.1 CDS Nhal_0057 NC_013960.1 58471 58683 R KEGG: pfo:Pfl01_3109 hypothetical protein; hypothetical protein complement(58471..58683) Nitrosococcus halophilus Nc4 8915022 YP_003525666.1 CDS Nhal_0058 NC_013960.1 58978 59298 D KEGG: noc:Noc_3050 cytochrome C, class I; cytochrome C, class I 58978..59298 Nitrosococcus halophilus Nc4 8915023 YP_003525667.1 CDS Nhal_0059 NC_013960.1 59353 59691 D PFAM: cytochrome C class I; KEGG: noc:Noc_3049 cytochrome c, class I; cytochrome C class I 59353..59691 Nitrosococcus halophilus Nc4 8915024 YP_003525668.1 CDS Nhal_0060 NC_013960.1 59767 60327 D KEGG: noc:Noc_3048 hypothetical protein; hypothetical protein 59767..60327 Nitrosococcus halophilus Nc4 8915025 YP_003525669.1 CDS Nhal_0061 NC_013960.1 61063 61893 D TIGRFAM: cytochrome C oxidase subunit II; PFAM: cytochrome C oxidase subunit II; cytochrome C oxidase subunit II transmembrane region; KEGG: noc:Noc_3047 cytochrome C oxidase subunit II; cytochrome C oxidase subunit II 61063..61893 Nitrosococcus halophilus Nc4 8915026 YP_003525670.1 CDS Nhal_0062 NC_013960.1 62061 63650 D KEGG: noc:Noc_3046 cytochrome C oxidase; TIGRFAM: cytochrome C oxidase subunit I; PFAM: cytochrome C oxidase subunit I; cytochrome C oxidase subunit I 62061..63650 Nitrosococcus halophilus Nc4 8915027 YP_003525671.1 CDS Nhal_0063 NC_013960.1 63748 64377 D PFAM: cytochrome C oxidase assembly protein CtaG/Cox11; KEGG: noc:Noc_3045 cytochrome C oxidase assembly protein; cytochrome C oxidase assembly protein CtaG/Cox11 63748..64377 Nitrosococcus halophilus Nc4 8915028 YP_003525672.1 CDS Nhal_0064 NC_013960.1 64461 65327 D PFAM: cytochrome C oxidase subunit III; KEGG: noc:Noc_3044 cytochrome C oxidase subunit III; cytochrome-c oxidase 64461..65327 Nitrosococcus halophilus Nc4 8915029 YP_003525673.1 CDS Nhal_0065 NC_013960.1 65414 65659 R KEGG: noc:Noc_3043 hypothetical protein; hypothetical protein complement(65414..65659) Nitrosococcus halophilus Nc4 8915030 YP_003525674.1 CDS Nhal_0066 NC_013960.1 65921 66631 D KEGG: noc:Noc_3042 hypothetical protein; hypothetical protein 65921..66631 Nitrosococcus halophilus Nc4 8915031 YP_003525675.1 CDS Nhal_0067 NC_013960.1 66648 67271 D KEGG: noc:Noc_3041 hypothetical protein; hypothetical protein 66648..67271 Nitrosococcus halophilus Nc4 8915032 YP_003525676.1 CDS Nhal_0068 NC_013960.1 67281 68309 D PFAM: cytochrome oxidase assembly; KEGG: noc:Noc_3040 cytochrome oxidase assembly; cytochrome oxidase assembly 67281..68309 Nitrosococcus halophilus Nc4 8915033 YP_003525677.1 CDS Nhal_0069 NC_013960.1 68306 69205 D TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; KEGG: noc:Noc_3039 protoheme IX farnesyltransferase; protoheme IX farnesyltransferase 68306..69205 Nitrosococcus halophilus Nc4 8915034 YP_003525678.1 CDS Nhal_0070 NC_013960.1 69357 70892 R TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; polysaccharide biosynthesis protein; KEGG: noc:Noc_3038 virulence factor MviN-like; integral membrane protein MviN complement(69357..70892) Nitrosococcus halophilus Nc4 8915035 YP_003525679.1 CDS Nhal_0071 NC_013960.1 71029 71292 D TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; KEGG: noc:Noc_3037 ribosomal protein S20p; 30S ribosomal protein S20 71029..71292 Nitrosococcus halophilus Nc4 8915036 YP_003525680.1 CDS Nhal_0072 NC_013960.1 71295 72422 R KEGG: noc:Noc_3036 gamma-glutamyl kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; SMART: PUA domain containing protein; glutamate 5-kinase complement(71295..72422) Nitrosococcus halophilus Nc4 8915037 YP_003525681.1 CDS Nhal_0073 NC_013960.1 72443 73468 R TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; KEGG: noc:Noc_3035 GTPase ObgE; GTP-binding protein Obg/CgtA complement(72443..73468) Nitrosococcus halophilus Nc4 8915038 YP_003525682.1 CDS Nhal_0074 NC_013960.1 73577 73834 R TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: noc:Noc_3034 50S ribosomal protein L27; 50S ribosomal protein L27 complement(73577..73834) Nitrosococcus halophilus Nc4 8915039 YP_003525683.1 CDS Nhal_0075 NC_013960.1 73854 74168 R TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: noc:Noc_3033 ribosomal protein L21; 50S ribosomal protein L21 complement(73854..74168) Nitrosococcus halophilus Nc4 8915040 YP_003525684.1 CDS Nhal_0076 NC_013960.1 74431 75399 D PFAM: polyprenyl synthetase; KEGG: noc:Noc_3032 trans-hexaprenyltranstransferase; trans-hexaprenyltranstransferase 74431..75399 Nitrosococcus halophilus Nc4 8915041 YP_003525685.1 CDS Nhal_0077 NC_013960.1 75643 76068 D PFAM: protein of unknown function DUF55; KEGG: btr:Btr_2586 hypothetical protein; hypothetical protein 75643..76068 Nitrosococcus halophilus Nc4 8915043 YP_003525686.1 CDS Nhal_0078 NC_013960.1 76220 76723 R PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: ngk:NGK_0649 phage associated protein; hypothetical protein complement(76220..76723) Nitrosococcus halophilus Nc4 8915044 YP_003525687.1 CDS Nhal_0080 NC_013960.1 78709 80304 D PFAM: type III restriction protein res subunit; helicase domain protein; DEAD/DEAH box helicase; SMART: DEAD-like helicase ; helicase; KEGG: nha:Nham_3708 helicase-like; type III restriction protein res subunit 78709..80304 Nitrosococcus halophilus Nc4 8915046 YP_003525688.1 CDS Nhal_0081 NC_013960.1 80291 82120 D KEGG: rpe:RPE_2170 hypothetical protein; hypothetical protein 80291..82120 Nitrosococcus halophilus Nc4 8915047 YP_003525689.1 CDS Nhal_0082 NC_013960.1 82124 83074 D KEGG: ara:Arad_12002 hypothetical protein; hypothetical protein 82124..83074 Nitrosococcus halophilus Nc4 8915048 YP_003525690.1 CDS Nhal_0083 NC_013960.1 83187 85517 D PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: sfr:Sfri_2088 protein of unknown function DUF262; hypothetical protein 83187..85517 Nitrosococcus halophilus Nc4 8915049 YP_003525691.1 CDS Nhal_0084 NC_013960.1 85522 86358 R KEGG: pna:Pnap_4585 phosphoadenosine phosphosulfate reductase; phosphoadenosine phosphosulfate reductase complement(85522..86358) Nitrosococcus halophilus Nc4 8915050 YP_003525692.1 CDS Nhal_0085 NC_013960.1 86358 89762 R KEGG: eca:ECA2875 ATP-binding protein; ATP-binding protein complement(86358..89762) Nitrosococcus halophilus Nc4 8915051 YP_003525693.1 CDS Nhal_0086 NC_013960.1 89762 90721 R KEGG: eca:ECA2874 hypothetical protein; hypothetical protein complement(89762..90721) Nitrosococcus halophilus Nc4 8915052 YP_003525694.1 CDS Nhal_0087 NC_013960.1 90879 92060 D PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rcm:A1E_02335 cysteine desulfurase; Cysteine desulfurase 90879..92060 Nitrosococcus halophilus Nc4 8915053 YP_003525695.1 CDS Nhal_0088 NC_013960.1 92187 94745 D PFAM: peptidase M15A; KEGG: mpt:Mpe_B0183 hypothetical protein; peptidase M15A 92187..94745 Nitrosococcus halophilus Nc4 8915054 YP_003525696.1 CDS Nhal_0089 NC_013960.1 94924 95820 R KEGG: noc:Noc_0158 hypothetical protein; hypothetical protein complement(94924..95820) Nitrosococcus halophilus Nc4 8915055 YP_003525697.1 CDS Nhal_0090 NC_013960.1 96266 96910 D PFAM: TetR family transcriptional regulator; KEGG: noc:Noc_0199 TetR family regulatory protein; TetR family transcriptional regulator 96266..96910 Nitrosococcus halophilus Nc4 8915056 YP_003525698.1 CDS Nhal_0091 NC_013960.1 96989 98086 D TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: noc:Noc_0200 secretion protein HlyD; RND family efflux transporter MFP subunit 96989..98086 Nitrosococcus halophilus Nc4 8915057 YP_003525699.1 CDS Nhal_0092 NC_013960.1 98158 101262 D PFAM: acriflavin resistance protein; KEGG: noc:Noc_0201 acriflavin resistance protein; acriflavin resistance protein 98158..101262 Nitrosococcus halophilus Nc4 8915058 YP_003525700.1 CDS Nhal_0093 NC_013960.1 101374 102846 D KEGG: noc:Noc_2911 hypothetical protein; hypothetical protein 101374..102846 Nitrosococcus halophilus Nc4 8915059 YP_003525701.1 CDS Nhal_0094 NC_013960.1 103242 104909 R PFAM: ferredoxin-dependent glutamate synthase; KEGG: noc:Noc_0101 ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase complement(103242..104909) Nitrosococcus halophilus Nc4 8915060 YP_003525702.1 CDS Nhal_0095 NC_013960.1 104926 106389 R KEGG: noc:Noc_0100 glycogen synthase; TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1; glycogen/starch synthase, ADP-glucose type complement(104926..106389) Nitrosococcus halophilus Nc4 8915061 YP_003525703.1 CDS Nhal_0096 NC_013960.1 106374 108011 R PFAM: Domain of unknown function DUF1957; glycoside hydrolase family 57; KEGG: noc:Noc_0099 glycoside hydrolase family protein; hypothetical protein complement(106374..108011) Nitrosococcus halophilus Nc4 8915062 YP_003525704.1 CDS Nhal_0097 NC_013960.1 108018 108680 R KEGG: noc:Noc_0098 hypothetical protein; hypothetical protein complement(108018..108680) Nitrosococcus halophilus Nc4 8915063 YP_003525705.1 CDS Nhal_0098 NC_013960.1 108700 109068 D hypothetical protein 108700..109068 Nitrosococcus halophilus Nc4 8915064 YP_003525706.1 CDS Nhal_0099 NC_013960.1 109198 112029 D KEGG: noc:Noc_0111 alpha-ketoglutarate decarboxylase; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: transketolase; dehydrogenase E1 component; 2-oxoglutarate dehydrogenase, E1 subunit 109198..112029 Nitrosococcus halophilus Nc4 8915065 YP_003525707.1 CDS Nhal_0100 NC_013960.1 112045 113340 D TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: dehydrogenase; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: noc:Noc_0112 dihydrolipoamide succinyltransferase; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase 112045..113340 Nitrosococcus halophilus Nc4 8915066 YP_003525708.1 CDS Nhal_0101 NC_013960.1 113362 114795 D TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: noc:Noc_0113 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase 113362..114795 Nitrosococcus halophilus Nc4 8915067 YP_003525709.1 CDS Nhal_0102 NC_013960.1 114792 115397 R PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: met:M446_5868 pyridoxamine 5'-phosphate oxidase-related FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein complement(114792..115397) Nitrosococcus halophilus Nc4 8915068 YP_003525710.1 CDS Nhal_0103 NC_013960.1 115529 116983 R PFAM: Di-haem cytochrome C peroxidase; KEGG: noc:Noc_0114 di-haem cytochrome C peroxidase; cytochrome-c peroxidase complement(115529..116983) Nitrosococcus halophilus Nc4 8915069 YP_003525711.1 CDS Nhal_0104 NC_013960.1 117047 118345 R PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: noc:Noc_0117 hypothetical protein; hypothetical protein complement(117047..118345) Nitrosococcus halophilus Nc4 8915070 YP_003525712.1 CDS Nhal_0105 NC_013960.1 118349 119770 R PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; KEGG: noc:Noc_0118 hypothetical protein; hypothetical protein complement(118349..119770) Nitrosococcus halophilus Nc4 8915071 YP_003525713.1 CDS Nhal_0106 NC_013960.1 119888 120490 D KEGG: noc:Noc_0119 hypothetical protein; hypothetical protein 119888..120490 Nitrosococcus halophilus Nc4 8915072 YP_003525714.1 CDS Nhal_0107 NC_013960.1 120918 121355 D KEGG: noc:Noc_0120 hypothetical protein; hypothetical protein 120918..121355 Nitrosococcus halophilus Nc4 8915073 YP_003525715.1 CDS Nhal_0108 NC_013960.1 121412 121786 R KEGG: noc:Noc_1917 hypothetical protein; hypothetical protein complement(121412..121786) Nitrosococcus halophilus Nc4 8915074 YP_003525716.1 CDS Nhal_0109 NC_013960.1 122113 123561 D PFAM: beta-lactamase; RNA-metabolising metallo-beta-lactamase; KEGG: son:SO_0541 metallo-beta-lactamase family protein; beta-lactamase 122113..123561 Nitrosococcus halophilus Nc4 8915075 YP_003525717.1 CDS Nhal_0110 NC_013960.1 123629 124672 R PFAM: membrane-bound metal-dependent hydrolase; KEGG: noc:Noc_0104 membrane-bound metal-dependent hydrolase; membrane-bound metal-dependent hydrolase complement(123629..124672) Nitrosococcus halophilus Nc4 8915076 YP_003525718.1 CDS Nhal_0111 NC_013960.1 124691 125545 R KEGG: noc:Noc_0105 hypothetical protein; hypothetical protein complement(124691..125545) Nitrosococcus halophilus Nc4 8915077 YP_003525719.1 CDS Nhal_0112 NC_013960.1 125718 126215 R hypothetical protein complement(125718..126215) Nitrosococcus halophilus Nc4 8915078 YP_003525720.1 CDS Nhal_0113 NC_013960.1 126606 127514 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: noc:Noc_0107 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(126606..127514) Nitrosococcus halophilus Nc4 8915079 YP_003525721.1 CDS Nhal_0114 NC_013960.1 127669 129147 R KEGG: dar:Daro_3107 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; hypothetical protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS sensor protein complement(127669..129147) Nitrosococcus halophilus Nc4 8915080 YP_003525722.1 CDS Nhal_0115 NC_013960.1 129549 129761 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: noc:Noc_2609 cold-shock protein, DNA-binding; Cold-shock protein DNA-binding protein complement(129549..129761) Nitrosococcus halophilus Nc4 8915081 YP_003525723.1 CDS Nhal_0116 NC_013960.1 130366 130575 R PFAM: protein of unknown function UPF0150; KEGG: aeh:Mlg_2272 hypothetical protein; hypothetical protein complement(130366..130575) Nitrosococcus halophilus Nc4 8915082 YP_003525724.1 CDS Nhal_0117 NC_013960.1 130588 130773 R PFAM: YcfA family protein; KEGG: aeh:Mlg_2273 YcfA family protein; YcfA family protein complement(130588..130773) Nitrosococcus halophilus Nc4 8915083 YP_003525725.1 CDS Nhal_0119 NC_013960.1 131623 131886 R TIGRFAM: addiction module toxin, Txe/YoeB family; addiction module toxin, RelE/StbE family; PFAM: Addiction module toxin Txe/YoeB; plasmid stabilization system; KEGG: aeh:Mlg_1786 addiction module antitoxin; Txe/YoeB family addiction module toxin complement(131623..131886) Nitrosococcus halophilus Nc4 8915085 YP_003525726.1 CDS Nhal_0120 NC_013960.1 131883 132125 R TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: aeh:Mlg_1787 prevent-host-death family protein; prevent-host-death family protein complement(131883..132125) Nitrosococcus halophilus Nc4 8915086 YP_003525727.1 CDS Nhal_0121 NC_013960.1 132229 132534 R KEGG: maq:Maqu_2675 hypothetical protein; hypothetical protein complement(132229..132534) Nitrosococcus halophilus Nc4 8915087 YP_003525728.1 CDS Nhal_0122 NC_013960.1 132531 132809 R KEGG: maq:Maqu_2676 hypothetical protein; hypothetical protein complement(132531..132809) Nitrosococcus halophilus Nc4 8915088 YP_003525729.1 CDS Nhal_0123 NC_013960.1 132956 133438 R PFAM: protein of unknown function DUF1568; KEGG: noc:Noc_1856 hypothetical protein; hypothetical protein complement(132956..133438) Nitrosococcus halophilus Nc4 8915089 YP_003525730.1 CDS Nhal_0124 NC_013960.1 133537 133797 R KEGG: tgr:Tgr7_3145 hypothetical protein; hypothetical protein complement(133537..133797) Nitrosococcus halophilus Nc4 8915090 YP_003525731.1 CDS Nhal_0125 NC_013960.1 133757 133996 R KEGG: sbn:Sbal195_4572 hypothetical protein; hypothetical protein complement(133757..133996) Nitrosococcus halophilus Nc4 8915091 YP_003525732.1 CDS Nhal_0126 NC_013960.1 134132 134398 R KEGG: gur:Gura_3956 hypothetical protein; hypothetical protein complement(134132..134398) Nitrosococcus halophilus Nc4 8915092 YP_003525733.1 CDS Nhal_0128 NC_013960.1 135231 136055 R PFAM: protein of unknown function DUF1555; KEGG: reh:H16_B0324 fumarylacetoacetate hydrolase; hypothetical protein complement(135231..136055) Nitrosococcus halophilus Nc4 8915094 YP_003525734.1 CDS Nhal_0130 NC_013960.1 137705 138355 D KEGG: noc:Noc_0079 DNA-3-methyladenine glycosylase II; TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); DNA-3-methyladenine glycosylase 137705..138355 Nitrosococcus halophilus Nc4 8915096 YP_003525735.1 CDS Nhal_0131 NC_013960.1 138488 144052 D KEGG: noc:Noc_0078 excinuclease ABC subunit A; TIGRFAM: excinuclease ABC subunit A; PFAM: ABC transporter; SMART: ATPase AAA; excinuclease ABC subunit A 138488..144052 Nitrosococcus halophilus Nc4 8915097 YP_003525736.1 CDS Nhal_0132 NC_013960.1 144075 144860 D PFAM: protein of unknown function DUF427; KEGG: mlo:mll2277 hypothetical protein; hypothetical protein 144075..144860 Nitrosococcus halophilus Nc4 8915098 YP_003525737.1 CDS Nhal_0133 NC_013960.1 144965 145570 D PFAM: protein of unknown function DUF820; KEGG: scl:sce5025 hypothetical protein; hypothetical protein 144965..145570 Nitrosococcus halophilus Nc4 8915099 YP_003525738.1 CDS Nhal_0134 NC_013960.1 145834 147093 R KEGG: ppd:Ppro_2173 hypothetical protein; hypothetical protein complement(145834..147093) Nitrosococcus halophilus Nc4 8915100 YP_003525739.1 CDS Nhal_0135 NC_013960.1 147134 147820 R PFAM: peptidase C39 bacteriocin processing; KEGG: bte:BTH_I0933 C39 family peptidase; peptidase C39 bacteriocin processing complement(147134..147820) Nitrosococcus halophilus Nc4 8915101 YP_003525740.1 CDS Nhal_0136 NC_013960.1 148175 148537 R KEGG: bcj:BCAS0236 haemagglutinin-related autotransporter protein; hemagglutinin-related autotransporter protein complement(148175..148537) Nitrosococcus halophilus Nc4 8915102 YP_003525741.1 CDS Nhal_0137 NC_013960.1 148591 148878 R hypothetical protein complement(148591..148878) Nitrosococcus halophilus Nc4 8915103 YP_003525742.1 CDS Nhal_0138 NC_013960.1 149058 149525 R KEGG: YALI0A00374p; hypothetical protein complement(149058..149525) Nitrosococcus halophilus Nc4 8915104 YP_003525743.1 CDS Nhal_0139 NC_013960.1 150120 150596 D KEGG: sde:Sde_0650 RhoGEF guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases-like; hypothetical protein 150120..150596 Nitrosococcus halophilus Nc4 8915105 YP_003525744.1 CDS Nhal_0140 NC_013960.1 151548 153239 R hypothetical protein complement(151548..153239) Nitrosococcus halophilus Nc4 8915106 YP_003525745.1 CDS Nhal_0141 NC_013960.1 153449 154735 D PFAM: protein of unknown function DUF1704; KEGG: psa:PST_2753 hypothetical protein; hypothetical protein 153449..154735 Nitrosococcus halophilus Nc4 8915107 YP_003525746.1 CDS Nhal_0142 NC_013960.1 154799 155677 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: noc:Noc_2776 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(154799..155677) Nitrosococcus halophilus Nc4 8915108 YP_003525747.1 CDS Nhal_0144 NC_013960.1 156134 157303 R PFAM: fatty acid desaturase; KEGG: noc:Noc_2775 fatty acid desaturase; fatty acid desaturase complement(156134..157303) Nitrosococcus halophilus Nc4 8915110 YP_003525748.1 CDS Nhal_0145 NC_013960.1 158017 158301 R KEGG: reh:H16_A2697 hypothetical protein; hypothetical protein complement(158017..158301) Nitrosococcus halophilus Nc4 8915111 YP_003525749.1 CDS Nhal_0146 NC_013960.1 158639 160243 D PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; GCN5-related N-acetyltransferase; KEGG: noc:Noc_2774 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 158639..160243 Nitrosococcus halophilus Nc4 8915112 YP_003525750.1 CDS Nhal_0147 NC_013960.1 160256 160525 R KEGG: bpy:Bphyt_7239 hypothetical protein; hypothetical protein complement(160256..160525) Nitrosococcus halophilus Nc4 8915113 YP_003525751.1 CDS Nhal_0148 NC_013960.1 160666 160950 R KEGG: reh:H16_A2695 hypothetical protein; hypothetical protein complement(160666..160950) Nitrosococcus halophilus Nc4 8915114 YP_003525752.1 CDS Nhal_0149 NC_013960.1 161496 163154 R PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; KEGG: noc:Noc_2773 ABC transporter ATPase; ABC transporter complement(161496..163154) Nitrosococcus halophilus Nc4 8915115 YP_003525753.1 CDS Nhal_0150 NC_013960.1 163178 164371 R PFAM: binding-protein-dependent transporters inner membrane component; KEGG: noc:Noc_2772 ABC transporter inner membrane subunit; binding-protein-dependent transporters inner membrane component complement(163178..164371) Nitrosococcus halophilus Nc4 8915116 YP_003525754.1 CDS Nhal_0151 NC_013960.1 164375 165754 R PFAM: binding-protein-dependent transporters inner membrane component; KEGG: noc:Noc_2771 ABC transporter inner membrane subunit; binding-protein-dependent transporters inner membrane component complement(164375..165754) Nitrosococcus halophilus Nc4 8915117 YP_003525755.1 CDS Nhal_0152 NC_013960.1 165773 167632 R PFAM: extracellular solute-binding protein family 5; KEGG: noc:Noc_2770 extracellular solute-binding protein; family 5 extracellular solute-binding protein complement(165773..167632) Nitrosococcus halophilus Nc4 8915118 YP_003525756.1 CDS Nhal_0153 NC_013960.1 167952 168245 R PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: noc:Noc_2769 RNA-binding protein, RNP-1; RNP-1 like RNA-binding protein complement(167952..168245) Nitrosococcus halophilus Nc4 8915119 YP_003525757.1 CDS Nhal_0154 NC_013960.1 168614 169594 D KEGG: bam:Bamb_4254 hypothetical protein; hypothetical protein 168614..169594 Nitrosococcus halophilus Nc4 8915120 YP_003525758.1 CDS Nhal_0155 NC_013960.1 169869 171539 D KEGG: bgl:bglu_1g28490 ATP-dependent endonuclease of the OLD family-like protein; ATP-dependent endonuclease of the OLD family-like protein 169869..171539 Nitrosococcus halophilus Nc4 8915121 YP_003525759.1 CDS Nhal_0156 NC_013960.1 172107 172544 D PFAM: protein of unknown function DUF29; KEGG: noc:Noc_0766 hypothetical protein; hypothetical protein 172107..172544 Nitrosococcus halophilus Nc4 8915122 YP_003525760.1 CDS Nhal_0157 NC_013960.1 172676 173029 D KEGG: afr:AFE_0501 hypothetical protein; hypothetical protein 172676..173029 Nitrosococcus halophilus Nc4 8915123 YP_003525761.1 CDS Nhal_0162 NC_013960.1 174267 174704 D PFAM: protein of unknown function DUF29; KEGG: noc:Noc_0766 hypothetical protein; hypothetical protein 174267..174704 Nitrosococcus halophilus Nc4 8915128 YP_003525762.1 CDS Nhal_0163 NC_013960.1 175031 175489 D PFAM: FxsA cytoplasmic membrane protein; KEGG: noc:Noc_2923 FxsA cytoplasmic membrane protein; FxsA cytoplasmic membrane protein 175031..175489 Nitrosococcus halophilus Nc4 8915130 YP_003525763.1 CDS Nhal_0164 NC_013960.1 175731 176021 D PFAM: chaperonin Cpn10; KEGG: noc:Noc_2922 co-chaperonin GroES; chaperonin Cpn10 175731..176021 Nitrosococcus halophilus Nc4 8915131 YP_003525764.1 CDS Nhal_0165 NC_013960.1 176087 177736 D TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: noc:Noc_2921 chaperonin GroEL; chaperonin GroEL 176087..177736 Nitrosococcus halophilus Nc4 8915132 YP_003525765.1 CDS Nhal_0166 NC_013960.1 177969 178373 R KEGG: noc:Noc_0203 Cu(I)-responsive transcriptional regulator; TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: transcription regulator MerR DNA binding; MerR family transcriptional regulator; SMART: MerR family transcriptional regulator; Cu(I)-responsive transcriptional regulator complement(177969..178373) Nitrosococcus halophilus Nc4 8915133 YP_003525766.1 CDS Nhal_0167 NC_013960.1 178392 178601 R PFAM: Heavy metal transport/detoxification protein; KEGG: noc:Noc_0204 heavy metal transport/detoxification protein; Heavy metal transport/detoxification protein complement(178392..178601) Nitrosococcus halophilus Nc4 8915134 YP_003525767.1 CDS Nhal_0168 NC_013960.1 178648 181107 R TIGRFAM: ATPase P; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: noc:Noc_0205 ATPase P; ATPase P complement(178648..181107) Nitrosococcus halophilus Nc4 8915135 YP_003525768.1 CDS Nhal_0171 NC_013960.1 183905 184153 D PFAM: CopG domain protein DNA-binding domain protein; KEGG: dol:Dole_2342 CopG/DNA-binding domain-containing protein; CopG domain-containing protein DNA-binding domain-containing protein 183905..184153 Nitrosococcus halophilus Nc4 8915138 YP_003525769.1 CDS Nhal_0172 NC_013960.1 184153 184542 D PFAM: PilT protein domain protein; KEGG: cbg:CbuG_0773 PIN domain protein; PilT protein domain-containing protein 184153..184542 Nitrosococcus halophilus Nc4 8915139 YP_003525770.1 CDS Nhal_0173 NC_013960.1 184713 187619 D PFAM: glutamate-ammonia ligase adenylyltransferase; GlnD PII-uridylyltransferase; KEGG: noc:Noc_0135 glutamate-ammonia-ligase adenylyltransferase; (glutamate--ammonia-ligase) adenylyltransferase 184713..187619 Nitrosococcus halophilus Nc4 8915140 YP_003525771.1 CDS Nhal_0174 NC_013960.1 187665 188594 D TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; KEGG: noc:Noc_0136 branched-chain amino acid aminotransferase; branched-chain amino acid aminotransferase 187665..188594 Nitrosococcus halophilus Nc4 8915141 YP_003525772.1 CDS Nhal_0175 NC_013960.1 188626 189372 D PFAM: protein of unknown function DUF28; KEGG: noc:Noc_0137 hypothetical protein; hypothetical protein 188626..189372 Nitrosococcus halophilus Nc4 8915142 YP_003525773.1 CDS Nhal_0176 NC_013960.1 189474 189998 D KEGG: noc:Noc_0138 crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; crossover junction endodeoxyribonuclease RuvC 189474..189998 Nitrosococcus halophilus Nc4 8915143 YP_003525774.1 CDS Nhal_0177 NC_013960.1 189995 190594 D KEGG: noc:Noc_0139 DNA recombination protein, RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein; SMART: Helix-hairpin-helix DNA-binding class 1; Holliday junction DNA helicase RuvA 189995..190594 Nitrosococcus halophilus Nc4 8915144 YP_003525775.1 CDS Nhal_0178 NC_013960.1 190591 191637 D KEGG: noc:Noc_0140 Holliday junction DNA helicase B; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: ATPase AAA central domain protein; Holliday junction DNA helicase RuvB domain; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; Holliday junction DNA helicase RuvB 190591..191637 Nitrosococcus halophilus Nc4 8915145 YP_003525776.1 CDS Nhal_0179 NC_013960.1 191630 192037 D TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: noc:Noc_0141 4-hydroxybenzoyl-CoA thioesterase; tol-pal system-associated acyl-CoA thioesterase 191630..192037 Nitrosococcus halophilus Nc4 8915146 YP_003525777.1 CDS Nhal_0180 NC_013960.1 192027 192704 D TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: noc:Noc_0142 MotA/TolQ/ExbB proton channel; protein TolQ 192027..192704 Nitrosococcus halophilus Nc4 8915147 YP_003525778.1 CDS Nhal_0181 NC_013960.1 192714 193160 D TIGRFAM: protein TolR; PFAM: biopolymertransporter ExbD/TolR; KEGG: noc:Noc_0143 biopolymer transporter ExbD/TolR; protein TolR 192714..193160 Nitrosococcus halophilus Nc4 8915148 YP_003525779.1 CDS Nhal_0182 NC_013960.1 193169 194059 D TIGRFAM: protein TolA; TonB family protein; PFAM: Tol-Pal system TolA; KEGG: noc:Noc_0144 TonB-like; protein TolA 193169..194059 Nitrosococcus halophilus Nc4 8915149 YP_003525780.1 CDS Nhal_0183 NC_013960.1 194060 195352 D TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: TolB domain protein; hypothetical protein; KEGG: noc:Noc_0145 hypothetical protein; Tol-Pal system beta propeller repeat-containing protein TolB 194060..195352 Nitrosococcus halophilus Nc4 8915150 YP_003525781.1 CDS Nhal_0184 NC_013960.1 195387 195962 D TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: noc:Noc_0146 OmpA/MotB; peptidoglycan-associated lipoprotein 195387..195962 Nitrosococcus halophilus Nc4 8915151 YP_003525782.1 CDS Nhal_0185 NC_013960.1 195965 196729 D KEGG: noc:Noc_0147 hypothetical protein; TIGRFAM: tol-pal system protein YbgF; PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; tol-pal system protein YbgF 195965..196729 Nitrosococcus halophilus Nc4 8915152 YP_003525783.1 CDS Nhal_0186 NC_013960.1 196775 197416 D PFAM: radical SAM protein; KEGG: noc:Noc_0148 radical SAM domain-containing protein; radical SAM protein 196775..197416 Nitrosococcus halophilus Nc4 8915153 YP_003525784.1 CDS Nhal_0187 NC_013960.1 197413 198087 D TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: noc:Noc_0149 ExsB; exsB protein 197413..198087 Nitrosococcus halophilus Nc4 8915154 YP_003525785.1 CDS Nhal_0189 NC_013960.1 198643 199659 D PFAM: peptidase M28; peptidase M20; KEGG: gur:Gura_1976 peptidase M28; peptidase M28 198643..199659 Nitrosococcus halophilus Nc4 8915157 YP_003525786.1 CDS Nhal_0192 NC_013960.1 201057 201983 D PFAM: peptidase S15; KEGG: mxa:MXAN_2361 hypothetical protein; peptidase S15 201057..201983 Nitrosococcus halophilus Nc4 8915160 YP_003525787.1 CDS Nhal_0193 NC_013960.1 202114 203973 R PFAM: CHRD domain containing protein; SMART: CHRD domain containing protein; KEGG: si:ch211-136a13.1; CHRD domain-containing protein complement(202114..203973) Nitrosococcus halophilus Nc4 8915161 YP_003525788.1 CDS Nhal_0194 NC_013960.1 204124 204618 R PFAM: outer membrane lipoprotein Slp; KEGG: tgr:Tgr7_0668 outer membrane lipoprotein Slp; outer membrane lipoprotein Slp complement(204124..204618) Nitrosococcus halophilus Nc4 8915162 YP_003525789.1 CDS Nhal_0195 NC_013960.1 204640 205203 R TIGRFAM: outer membrane lipoprotein, Slp family; PFAM: outer membrane lipoprotein Slp; KEGG: tgr:Tgr7_0667 outer membrane lipoprotein, Slp family; Slp family outer membrane lipoprotein complement(204640..205203) Nitrosococcus halophilus Nc4 8915163 YP_003525790.1 CDS Nhal_0196 NC_013960.1 205337 205600 R KEGG: noc:Noc_3005 hypothetical protein; hypothetical protein complement(205337..205600) Nitrosococcus halophilus Nc4 8915164 YP_003525791.1 CDS Nhal_0197 NC_013960.1 205597 206253 R TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF165; KEGG: xau:Xaut_4165 hypothetical protein; hypothetical protein complement(205597..206253) Nitrosococcus halophilus Nc4 8915165 YP_003525792.1 CDS Nhal_0198 NC_013960.1 206447 206794 D PFAM: Calcium-binding EF-hand-containing protein; SMART: Calcium-binding EF-hand-containing protein; KEGG: CLSPN; claspin homolog (Xenopus laevis); calcium-binding EF-hand protein-containing protein 206447..206794 Nitrosococcus halophilus Nc4 8915166 YP_003525793.1 CDS Nhal_0200 NC_013960.1 209011 209124 D hypothetical protein 209011..209124 Nitrosococcus halophilus Nc4 8915168 YP_003525794.1 CDS Nhal_0201 NC_013960.1 209420 211024 R KEGG: net:Neut_0141 hypothetical protein; hypothetical protein complement(209420..211024) Nitrosococcus halophilus Nc4 8915169 YP_003525795.1 CDS Nhal_0203 NC_013960.1 213344 213646 R KEGG: noc:Noc_0571 XRE family transcriptional regulator; TIGRFAM: addiction module antidote protein, HigA family; PFAM: hypothetical protein; SMART: hypothetical protein; HigA family addiction module antidote protein complement(213344..213646) Nitrosococcus halophilus Nc4 8915171 YP_003525796.1 CDS Nhal_0204 NC_013960.1 213656 213934 R PFAM: plasmid maintenance system killer; KEGG: noc:Noc_0570 plasmid maintenance system killer; plasmid maintenance system killer complement(213656..213934) Nitrosococcus halophilus Nc4 8915172 YP_003525797.1 CDS Nhal_0206 NC_013960.1 214382 215257 R PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: sfu:Sfum_3983 tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(214382..215257) Nitrosococcus halophilus Nc4 8915174 YP_003525798.1 CDS Nhal_0207 NC_013960.1 215591 216466 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: noc:Noc_0363 oxidoreductase FAD/NAD(P)-binding; oxidoreductase FAD/NAD(P)-binding domain-containing protein complement(215591..216466) Nitrosococcus halophilus Nc4 8915175 YP_003525799.1 CDS Nhal_0208 NC_013960.1 216463 217752 R TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; KEGG: noc:Noc_0364 dihydroorotase multifunctional complex type; dihydroorotase complement(216463..217752) Nitrosococcus halophilus Nc4 8915176 YP_003525800.1 CDS Nhal_0209 NC_013960.1 217752 218726 R KEGG: noc:Noc_0365 aspartate carbamoyltransferase catalytic subunit; TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate carbamoyltransferase complement(217752..218726) Nitrosococcus halophilus Nc4 8915177 YP_003525801.1 CDS Nhal_0210 NC_013960.1 218723 219256 R PFAM: phosphoribosyltransferase; KEGG: noc:Noc_0366 uracil phosphoribosyltransferase; uracil phosphoribosyltransferase complement(218723..219256) Nitrosococcus halophilus Nc4 8915178 YP_003525802.1 CDS Nhal_0211 NC_013960.1 219300 219743 R PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: noc:Noc_0367 Holliday junction resolvase YqgF; Holliday junction resolvase YqgF complement(219300..219743) Nitrosococcus halophilus Nc4 8915179 YP_003525803.1 CDS Nhal_0212 NC_013960.1 219740 220303 R PFAM: protein of unknown function DUF179; KEGG: noc:Noc_0368 hypothetical protein; hypothetical protein complement(219740..220303) Nitrosococcus halophilus Nc4 8915180 YP_003525804.1 CDS Nhal_0213 NC_013960.1 220337 220600 R KEGG: noc:Noc_3005 hypothetical protein; hypothetical protein complement(220337..220600) Nitrosococcus halophilus Nc4 8915181 YP_003525805.1 CDS Nhal_0214 NC_013960.1 220597 221508 R TIGRFAM: TonB family protein; KEGG: noc:Noc_0369 TonB-like protein; TonB family protein complement(220597..221508) Nitrosococcus halophilus Nc4 8915182 YP_003525806.1 CDS Nhal_0215 NC_013960.1 221517 222479 R KEGG: tgr:Tgr7_2905 glutathione synthetase; TIGRFAM: glutathione synthetase; PFAM: glutathione synthetase ATP-binding; RimK domain protein ATP-grasp; glutathione synthetase domain protein; glutathione synthetase complement(221517..222479) Nitrosococcus halophilus Nc4 8915183 YP_003525807.1 CDS Nhal_0216 NC_013960.1 222744 224477 D PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: noc:Noc_0370 outer membrane protein; surface antigen (D15) 222744..224477 Nitrosococcus halophilus Nc4 8915184 YP_003525808.1 CDS Nhal_0217 NC_013960.1 224474 228238 D PFAM: protein of unknown function DUF490; KEGG: noc:Noc_0371 hypothetical protein; hypothetical protein 224474..228238 Nitrosococcus halophilus Nc4 8915185 YP_003525809.1 CDS Nhal_0218 NC_013960.1 228363 229307 D KEGG: noc:Noc_0372 glycyl-tRNA synthetase subunit alpha; TIGRFAM: glycyl-tRNA synthetase subunit alpha; PFAM: glycyl-tRNA synthetase subunit alpha; glycyl-tRNA synthetase subunit alpha 228363..229307 Nitrosococcus halophilus Nc4 8915186 YP_003525810.1 CDS Nhal_0219 NC_013960.1 229300 231375 D KEGG: noc:Noc_0373 glycine--tRNA ligase; TIGRFAM: glycyl-tRNA synthetase subunit beta; glycyl-tRNA synthetase subunit beta 229300..231375 Nitrosococcus halophilus Nc4 8915187 YP_003525811.1 CDS Nhal_0220 NC_013960.1 231435 231974 D TIGRFAM: histidinol-phosphate phosphatase; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: polynucleotide kinase 3 phosphatase central region; KEGG: noc:Noc_0374 histidinol-phosphate phosphatase; histidinol-phosphate phosphatase 231435..231974 Nitrosococcus halophilus Nc4 8915188 YP_003525812.1 CDS Nhal_0221 NC_013960.1 231967 232881 D PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: noc:Noc_0375 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 231967..232881 Nitrosococcus halophilus Nc4 8915189 YP_003525813.1 CDS Nhal_0222 NC_013960.1 232841 234931 D KEGG: noc:Noc_0376 multisensor diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; response regulator receiver; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; diguanylate cyclase 232841..234931 Nitrosococcus halophilus Nc4 8915190 YP_003525814.1 CDS Nhal_0224 NC_013960.1 235314 235502 D KEGG: noc:Noc_3005 hypothetical protein; hypothetical protein 235314..235502 Nitrosococcus halophilus Nc4 8915192 YP_003525815.1 CDS Nhal_0225 NC_013960.1 235870 236772 D PFAM: peptidase M48 Ste24p; peptidase M56 BlaR1; KEGG: dde:Dde_1051 HtpX-2 peptidase; peptidase M48 Ste24p 235870..236772 Nitrosococcus halophilus Nc4 8915193 YP_003525816.1 CDS Nhal_0226 NC_013960.1 236769 237335 D hypothetical protein 236769..237335 Nitrosococcus halophilus Nc4 8915194 YP_003525817.1 CDS Nhal_0227 NC_013960.1 237354 237632 R hypothetical protein complement(237354..237632) Nitrosococcus halophilus Nc4 8915195 YP_003525818.1 CDS Nhal_0228 NC_013960.1 237663 238364 R PFAM: PspA/IM30 family protein; KEGG: afr:AFE_2017 PspA/IM30 family; PspA/IM30 family protein complement(237663..238364) Nitrosococcus halophilus Nc4 8915196 YP_003525819.1 CDS Nhal_0229 NC_013960.1 238454 240034 R PFAM: aminoglycoside phosphotransferase; KEGG: noc:Noc_0379 hypothetical protein; aminoglycoside phosphotransferase complement(238454..240034) Nitrosococcus halophilus Nc4 8915197 YP_003525820.1 CDS Nhal_0230 NC_013960.1 240093 241304 R PFAM: polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: noc:Noc_0389 polynucleotide adenylyltransferase; polynucleotide adenylyltransferase region complement(240093..241304) Nitrosococcus halophilus Nc4 8915198 YP_003525821.1 CDS Nhal_0231 NC_013960.1 241313 242296 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: noc:Noc_0390 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(241313..242296) Nitrosococcus halophilus Nc4 8915199 YP_003525822.1 CDS Nhal_0232 NC_013960.1 242489 243853 D PFAM: aldehyde dehydrogenase; KEGG: noc:Noc_0391 aldehyde dehydrogenase; aldehyde dehydrogenase 242489..243853 Nitrosococcus halophilus Nc4 8915200 YP_003525823.1 CDS Nhal_0233 NC_013960.1 243884 245188 R hypothetical protein complement(243884..245188) Nitrosococcus halophilus Nc4 8915201 YP_003525824.1 CDS Nhal_0234 NC_013960.1 245320 246360 D PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: noc:Noc_0392 response regulator receiver; response regulator receiver 245320..246360 Nitrosococcus halophilus Nc4 8915202 YP_003525825.1 CDS Nhal_0235 NC_013960.1 246851 247702 D TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: noc:Noc_0393 modification methylase HemK; HemK family modification methylase 246851..247702 Nitrosococcus halophilus Nc4 8915203 YP_003525826.1 CDS Nhal_0236 NC_013960.1 247766 248767 D PFAM: protein of unknown function DUF523; protein of unknown function DUF1722; KEGG: noc:Noc_0394 hypothetical protein; hypothetical protein 247766..248767 Nitrosococcus halophilus Nc4 8915204 YP_003525827.1 CDS Nhal_0237 NC_013960.1 249201 250397 D PFAM: transposase IS4 family protein; KEGG: pca:Pcar_0986 transposase; transposase IS4 family protein 249201..250397 Nitrosococcus halophilus Nc4 8915205 YP_003525828.1 CDS Nhal_0238 NC_013960.1 250541 251083 D hypothetical protein 250541..251083 Nitrosococcus halophilus Nc4 8915206 YP_003525829.1 CDS Nhal_0239 NC_013960.1 251173 252390 D PFAM: RES domain protein; KEGG: ppg:PputGB1_4795 RES domain-containing protein; RES domain-containing protein 251173..252390 Nitrosococcus halophilus Nc4 8915207 YP_003525830.1 CDS Nhal_0240 NC_013960.1 252499 253041 D PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: ccs:CCNA_02125 polar development protein PodJ; Sel1 domain-containing protein repeat-containing protein 252499..253041 Nitrosococcus halophilus Nc4 8915208 YP_003525831.1 CDS Nhal_0241 NC_013960.1 253328 253657 D KEGG: noc:Noc_0284 hypothetical protein; hypothetical protein 253328..253657 Nitrosococcus halophilus Nc4 8915209 YP_003525832.1 CDS Nhal_0242 NC_013960.1 253670 253984 D PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: noc:Noc_0283 XRE family transcriptional regulator; hypothetical protein 253670..253984 Nitrosococcus halophilus Nc4 8915210 YP_003525833.1 CDS Nhal_0243 NC_013960.1 254223 254480 D KEGG: rfe:RF_0889 hypothetical protein; hypothetical protein 254223..254480 Nitrosococcus halophilus Nc4 8915211 YP_003525834.1 CDS Nhal_0244 NC_013960.1 254487 254717 D KEGG: amc:MADE_00619 hypothetical protein; hypothetical protein 254487..254717 Nitrosococcus halophilus Nc4 8915212 YP_003525835.1 CDS Nhal_0245 NC_013960.1 254895 255932 R PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: tgr:Tgr7_2573 AraC family transcriptional regulator with amidase-like domain; AraC family transcriptional regulator complement(254895..255932) Nitrosococcus halophilus Nc4 8915213 YP_003525836.1 CDS Nhal_0246 NC_013960.1 256366 256902 D KEGG: nmu:Nmul_A1359 hypothetical protein; hypothetical protein 256366..256902 Nitrosococcus halophilus Nc4 8915214 YP_003525837.1 CDS Nhal_0248 NC_013960.1 258328 259176 R KEGG: noc:Noc_3067 transfer origin protein, TraL; transfer origin protein, TraL complement(258328..259176) Nitrosococcus halophilus Nc4 8915216 YP_003525838.1 CDS Nhal_0249 NC_013960.1 259188 259553 R KEGG: noc:Noc_3066 hypothetical protein; hypothetical protein complement(259188..259553) Nitrosococcus halophilus Nc4 8915217 YP_003525839.1 CDS Nhal_0251 NC_013960.1 260436 261278 D PFAM: protein of unknown function DUF1568; KEGG: tbd:Tbd_1967 hypothetical protein; hypothetical protein 260436..261278 Nitrosococcus halophilus Nc4 8915219 YP_003525840.1 CDS Nhal_0252 NC_013960.1 261342 262775 R PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: tgr:Tgr7_1394 deoxyribodipyrimidine photo-lyase; deoxyribodipyrimidine photo-lyase complement(261342..262775) Nitrosococcus halophilus Nc4 8915220 YP_003525841.1 CDS Nhal_0253 NC_013960.1 262784 263530 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: tgr:Tgr7_1395 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(262784..263530) Nitrosococcus halophilus Nc4 8915221 YP_003525842.1 CDS Nhal_0254 NC_013960.1 263640 264401 R TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; transposase IS891/IS1136/IS1341 family; KEGG: pin:Ping_3063 transposase, IS605 OrfB family protein; transposase, IS605 OrfB family complement(263640..264401) Nitrosococcus halophilus Nc4 8915222 YP_003525843.1 CDS Nhal_0255 NC_013960.1 264587 265531 R PFAM: MerR family transcriptional regulator; SMART: MerR family transcriptional regulator; KEGG: aeh:Mlg_2255 MerR family transcriptional regulator; MerR family transcriptional regulator complement(264587..265531) Nitrosococcus halophilus Nc4 8915223 YP_003525844.1 CDS Nhal_0256 NC_013960.1 265742 266515 D PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: noc:Noc_0362 adenylyltransferase; UBA/THIF-type NAD/FAD binding protein 265742..266515 Nitrosococcus halophilus Nc4 8915224 YP_003525845.1 CDS Nhal_0257 NC_013960.1 266512 266916 D PFAM: Mov34/MPN/PAD-1 family protein; SMART: Mov34/MPN/PAD-1 family protein; KEGG: noc:Noc_0361 PAD1/JAB1 superfamily metal-dependent protease; Mov34/MPN/PAD-1 family protein 266512..266916 Nitrosococcus halophilus Nc4 8915225 YP_003525846.1 CDS Nhal_0258 NC_013960.1 266985 268322 D PFAM: peptidase U62 modulator of DNA gyrase; KEGG: tgr:Tgr7_2264 microcin-processing peptidase 1; peptidase U62 modulator of DNA gyrase 266985..268322 Nitrosococcus halophilus Nc4 8915226 YP_003525847.1 CDS Nhal_0259 NC_013960.1 268447 269202 D KEGG: noc:Noc_0360 hypothetical protein; hypothetical protein 268447..269202 Nitrosococcus halophilus Nc4 8915227 YP_003525848.1 CDS Nhal_0260 NC_013960.1 269410 270132 D PFAM: protein of unknown function DUF533; KEGG: noc:Noc_0359 hypothetical protein; hypothetical protein 269410..270132 Nitrosococcus halophilus Nc4 8915228 YP_003525849.1 CDS Nhal_0261 NC_013960.1 270203 270709 R KEGG: pat:Patl_0448 2OG-Fe(II) oxygenase; Alkylated DNA repair protein-like protein complement(270203..270709) Nitrosococcus halophilus Nc4 8915229 YP_003525850.1 CDS Nhal_0262 NC_013960.1 270754 271335 R KEGG: maq:Maqu_2987 hypothetical protein; hypothetical protein complement(270754..271335) Nitrosococcus halophilus Nc4 8915230 YP_003525851.1 CDS Nhal_0263 NC_013960.1 271346 271444 R hypothetical protein complement(271346..271444) Nitrosococcus halophilus Nc4 8915231 YP_003525852.1 CDS Nhal_0264 NC_013960.1 271764 272210 D hypothetical protein 271764..272210 Nitrosococcus halophilus Nc4 8915232 YP_003525853.1 CDS Nhal_0265 NC_013960.1 272234 273952 R PFAM: chloride channel core; KEGG: noc:Noc_0358 Cl-channel, voltage gated; chloride channel core complement(272234..273952) Nitrosococcus halophilus Nc4 8915233 YP_003525854.1 CDS Nhal_0266 NC_013960.1 274294 274509 R PFAM: protein of unknown function UPF0150; KEGG: noc:Noc_1108 hypothetical protein; hypothetical protein complement(274294..274509) Nitrosococcus halophilus Nc4 8915234 YP_003525855.1 CDS Nhal_0267 NC_013960.1 275316 275651 R PFAM: PemK family protein; KEGG: cak:Caul_3898 toxin ChpA; PemK family protein complement(275316..275651) Nitrosococcus halophilus Nc4 8915235 YP_003525856.1 CDS Nhal_0268 NC_013960.1 275656 275898 R PFAM: SpoVT/AbrB domain protein; KEGG: pnu:Pnuc_1108 MazE family transcriptional regulator; SpoVT/AbrB domain-containing protein complement(275656..275898) Nitrosococcus halophilus Nc4 8915236 YP_003525857.1 CDS Nhal_0269 NC_013960.1 276138 277076 R TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: noc:Noc_2934 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; HemK family modification methylase complement(276138..277076) Nitrosococcus halophilus Nc4 8915237 YP_003525858.1 CDS Nhal_0270 NC_013960.1 277088 278497 R TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein; KEGG: noc:Noc_2935 isopropylmalate isomerase large subunit; 3-isopropylmalate dehydratase, large subunit complement(277088..278497) Nitrosococcus halophilus Nc4 8915238 YP_003525859.1 CDS Nhal_0271 NC_013960.1 278530 281796 R PFAM: acriflavin resistance protein; KEGG: noc:Noc_2936 acriflavin resistance protein; acriflavin resistance protein complement(278530..281796) Nitrosococcus halophilus Nc4 8915239 YP_003525860.1 CDS Nhal_0272 NC_013960.1 281797 283047 R TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: noc:Noc_2937 secretion protein HlyD; RND family efflux transporter MFP subunit complement(281797..283047) Nitrosococcus halophilus Nc4 8915240 YP_003525861.1 CDS Nhal_0273 NC_013960.1 283365 283568 R hypothetical protein complement(283365..283568) Nitrosococcus halophilus Nc4 8915241 YP_003525862.1 CDS Nhal_0274 NC_013960.1 283622 284731 R KEGG: noc:Noc_2938 chorismate synthase; TIGRFAM: chorismate synthase; PFAM: chorismate synthase; chorismate synthase complement(283622..284731) Nitrosococcus halophilus Nc4 8915242 YP_003525863.1 CDS Nhal_0276 NC_013960.1 285124 285435 D hypothetical protein 285124..285435 Nitrosococcus halophilus Nc4 8915244 YP_003525864.1 CDS Nhal_0277 NC_013960.1 285459 285674 D hypothetical protein 285459..285674 Nitrosococcus halophilus Nc4 8915245 YP_003525865.1 CDS Nhal_0278 NC_013960.1 285662 285874 D hypothetical protein 285662..285874 Nitrosococcus halophilus Nc4 8915246 YP_003525866.1 CDS Nhal_0280 NC_013960.1 286194 287051 R PFAM: CHRD domain containing protein; SMART: CHRD domain containing protein; KEGG: noc:Noc_0158 hypothetical protein; CHRD domain-containing protein complement(286194..287051) Nitrosococcus halophilus Nc4 8915248 YP_003525867.1 CDS Nhal_0281 NC_013960.1 287208 287825 R KEGG: noc:Noc_0158 hypothetical protein; hypothetical protein complement(287208..287825) Nitrosococcus halophilus Nc4 8915249 YP_003525868.1 CDS Nhal_0282 NC_013960.1 288105 288665 R KEGG: tmz:Tmz1t_0280 hypothetical protein; hypothetical protein complement(288105..288665) Nitrosococcus halophilus Nc4 8915250 YP_003525869.1 CDS Nhal_0283 NC_013960.1 288739 289602 R hypothetical protein complement(288739..289602) Nitrosococcus halophilus Nc4 8915251 YP_003525870.1 CDS Nhal_0284 NC_013960.1 289836 291065 D KEGG: abo:ABO_1043 hypothetical protein; hypothetical protein 289836..291065 Nitrosococcus halophilus Nc4 8915252 YP_003525871.1 CDS Nhal_0285 NC_013960.1 291059 292192 D PFAM: glycosyl transferase group 1; KEGG: abo:ABO_1044 hypothetical protein; group 1 glycosyl transferase 291059..292192 Nitrosococcus halophilus Nc4 8915253 YP_003525872.1 CDS Nhal_0286 NC_013960.1 292192 292896 D KEGG: abo:ABO_1045 hypothetical protein; hypothetical protein 292192..292896 Nitrosococcus halophilus Nc4 8915254 YP_003525873.1 CDS Nhal_0287 NC_013960.1 293023 295251 R KEGG: sat:SYN_02894 fibronectin type III domain-containing protein; hypothetical protein complement(293023..295251) Nitrosococcus halophilus Nc4 8915255 YP_003525874.1 CDS Nhal_0288 NC_013960.1 295336 296172 R hypothetical protein complement(295336..296172) Nitrosococcus halophilus Nc4 8915256 YP_003525875.1 CDS Nhal_0289 NC_013960.1 296172 296312 R hypothetical protein complement(296172..296312) Nitrosococcus halophilus Nc4 8915257 YP_003525876.1 CDS Nhal_0290 NC_013960.1 296384 296638 R hypothetical protein complement(296384..296638) Nitrosococcus halophilus Nc4 8915258 YP_003525877.1 CDS Nhal_0291 NC_013960.1 296638 297039 R hypothetical protein complement(296638..297039) Nitrosococcus halophilus Nc4 8915259 YP_003525878.1 CDS Nhal_0292 NC_013960.1 297047 297832 R hypothetical protein complement(297047..297832) Nitrosococcus halophilus Nc4 8915260 YP_003525879.1 CDS Nhal_0293 NC_013960.1 297877 298656 R hypothetical protein complement(297877..298656) Nitrosococcus halophilus Nc4 8915261 YP_003525880.1 CDS Nhal_0294 NC_013960.1 298640 299776 R hypothetical protein complement(298640..299776) Nitrosococcus halophilus Nc4 8915262 YP_003525881.1 CDS Nhal_0295 NC_013960.1 299909 300589 R hypothetical protein complement(299909..300589) Nitrosococcus halophilus Nc4 8915263 YP_003525882.1 CDS Nhal_0296 NC_013960.1 300629 301657 R KEGG: azc:AZC_4326 penicillin-insensitive murein endopeptidase; hypothetical protein complement(300629..301657) Nitrosococcus halophilus Nc4 8915264 YP_003525883.1 CDS Nhal_0297 NC_013960.1 302159 302536 D PFAM: ArsR family transcriptional regulator; SMART: ArsR family transcriptional regulator; KEGG: tgr:Tgr7_1925 ArsR family transcriptional regulator; ArsR family transcriptional regulator 302159..302536 Nitrosococcus halophilus Nc4 8915265 YP_003525884.1 CDS Nhal_0298 NC_013960.1 302628 303134 D PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; KEGG: mes:Meso_4199 protein tyrosine phosphatase; protein-tyrosine phosphatase, low molecular weight 302628..303134 Nitrosococcus halophilus Nc4 8915266 YP_003525885.1 CDS Nhal_0299 NC_013960.1 303378 303947 D KEGG: transcriptional coactivator; hypothetical protein 303378..303947 Nitrosococcus halophilus Nc4 8915267 YP_003525886.1 CDS Nhal_0300 NC_013960.1 303962 304579 R TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: noc:Noc_0157 HylII; hemolysin III family channel protein complement(303962..304579) Nitrosococcus halophilus Nc4 8915268 YP_003525887.1 CDS Nhal_0301 NC_013960.1 304693 305871 R PFAM: HI0933 family protein; FAD dependent oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: noc:Noc_0156 hypothetical protein; hypothetical protein complement(304693..305871) Nitrosococcus halophilus Nc4 8915269 YP_003525888.1 CDS Nhal_0302 NC_013960.1 306052 306549 R KEGG: noc:Noc_0155 hypothetical protein; hypothetical protein complement(306052..306549) Nitrosococcus halophilus Nc4 8915270 YP_003525889.1 CDS Nhal_0303 NC_013960.1 306605 307090 R PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vei:Veis_4651 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(306605..307090) Nitrosococcus halophilus Nc4 8915271 YP_003525890.1 CDS Nhal_0304 NC_013960.1 307574 308716 D PFAM: cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase type 11; methyltransferase type 12; KEGG: aav:Aave_3565 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 307574..308716 Nitrosococcus halophilus Nc4 8915272 YP_003525891.1 CDS Nhal_0305 NC_013960.1 308739 309146 D KEGG: bur:Bcep18194_C6579 hypothetical protein; hypothetical protein 308739..309146 Nitrosococcus halophilus Nc4 8915273 YP_003525892.1 CDS Nhal_0306 NC_013960.1 309149 309307 D hypothetical protein 309149..309307 Nitrosococcus halophilus Nc4 8915274 YP_003525893.1 CDS Nhal_0308 NC_013960.1 310074 311102 D PFAM: fatty acid desaturase; KEGG: sml:Smlt2374 fatty acid desaturase (membrane); stearoyl-CoA 9-desaturase 310074..311102 Nitrosococcus halophilus Nc4 8915276 YP_003525894.1 CDS Nhal_0309 NC_013960.1 311153 312349 D KEGG: gsu:GSU2327 hypothetical protein; hypothetical protein 311153..312349 Nitrosococcus halophilus Nc4 8915277 YP_003525895.1 CDS Nhal_0310 NC_013960.1 312406 312996 D PFAM: protein of unknown function DUF1365; KEGG: ppd:Ppro_0128 hypothetical protein; hypothetical protein 312406..312996 Nitrosococcus halophilus Nc4 8915278 YP_003525896.1 CDS Nhal_0311 NC_013960.1 313017 313735 R hypothetical protein complement(join(313017..313457,313457..313735)) Nitrosococcus halophilus Nc4 8915279 YP_003525897.1 CDS Nhal_0313 NC_013960.1 314007 315311 D PFAM: cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase type 11; methyltransferase type 12; KEGG: ppd:Ppro_0127 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 314007..315311 Nitrosococcus halophilus Nc4 8915281 YP_003525898.1 CDS Nhal_0314 NC_013960.1 315691 316722 R PFAM: protein of unknown function DUF1568; KEGG: noc:Noc_1856 hypothetical protein; hypothetical protein complement(315691..316722) Nitrosococcus halophilus Nc4 8915282 YP_003525899.1 CDS Nhal_0315 NC_013960.1 316790 317038 R KEGG: ppd:Ppro_0139 transposase mutator family protein; transposase mutator family protein complement(316790..317038) Nitrosococcus halophilus Nc4 8915283 YP_003525900.1 CDS Nhal_0316 NC_013960.1 317076 317480 R KEGG: vha:VIBHAR_02566 hypothetical protein; hypothetical protein complement(317076..317480) Nitrosococcus halophilus Nc4 8915284 YP_003525901.1 CDS Nhal_0317 NC_013960.1 317914 318201 R TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: ppd:Ppro_3843 addiction module antitoxin; RelE/StbE family addiction module toxin complement(317914..318201) Nitrosococcus halophilus Nc4 8915285 YP_003525902.1 CDS Nhal_0318 NC_013960.1 318198 318455 R PFAM: CopG domain protein DNA-binding domain protein; KEGG: mlo:msr2423 hypothetical protein; CopG domain-containing protein DNA-binding domain-containing protein complement(318198..318455) Nitrosococcus halophilus Nc4 8915286 YP_003525903.1 CDS Nhal_0320 NC_013960.1 318630 318950 R PFAM: PemK family protein; KEGG: noc:Noc_A0033 PemK-like protein; PemK family protein complement(318630..318950) Nitrosococcus halophilus Nc4 8915288 YP_003525904.1 CDS Nhal_0321 NC_013960.1 318937 319170 R KEGG: noc:Noc_A0034 hypothetical protein; hypothetical protein complement(318937..319170) Nitrosococcus halophilus Nc4 8915289 YP_003525905.1 CDS Nhal_0322 NC_013960.1 319233 320387 R PFAM: major facilitator superfamily MFS_1; nucleoside:H symporter; KEGG: noc:Noc_2803 MFS family nucleoside/H(+) symporter; major facilitator superfamily protein complement(319233..320387) Nitrosococcus halophilus Nc4 8915290 YP_003525906.1 CDS Nhal_0323 NC_013960.1 320450 320752 D hypothetical protein 320450..320752 Nitrosococcus halophilus Nc4 8915291 YP_003525907.1 CDS Nhal_0324 NC_013960.1 320706 321641 D KEGG: noc:Noc_2802 malate dehydrogenase, NAD-dependent; TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: lactate/malate dehydrogenase; malate dehydrogenase, NAD-dependent 320706..321641 Nitrosococcus halophilus Nc4 8915292 YP_003525908.1 CDS Nhal_0325 NC_013960.1 321868 322659 D KEGG: tgr:Tgr7_2736 hemolysin; hemolysin 321868..322659 Nitrosococcus halophilus Nc4 8915293 YP_003525909.1 CDS Nhal_0326 NC_013960.1 322956 324314 R TIGRFAM: magnesium transporter; PFAM: MgtE intracellular region; CBS domain containing protein; MgtE integral membrane region; KEGG: noc:Noc_2801 divalent cation transporter; magnesium transporter complement(322956..324314) Nitrosococcus halophilus Nc4 8915294 YP_003525910.1 CDS Nhal_0327 NC_013960.1 324460 326208 R TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; KEGG: noc:Noc_2800 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase complement(324460..326208) Nitrosococcus halophilus Nc4 8915295 YP_003525911.1 CDS Nhal_0328 NC_013960.1 326273 326542 R TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: noc:Noc_2799 phosphoryl transfer system, HPr; phosphocarrier, HPr family complement(326273..326542) Nitrosococcus halophilus Nc4 8915296 YP_003525912.1 CDS Nhal_0329 NC_013960.1 326529 326945 R PFAM: PTS system fructose subfamily IIA component; KEGG: noc:Noc_2798 PTS system fructose subfamily IIA component; PTS system fructose subfamily IIA component complement(326529..326945) Nitrosococcus halophilus Nc4 8915297 YP_003525913.1 CDS Nhal_0330 NC_013960.1 326942 327790 R PFAM: conserved hypothetical protein; KEGG: noc:Noc_2797 hypothetical protein; hypothetical protein complement(326942..327790) Nitrosococcus halophilus Nc4 8915298 YP_003525914.1 CDS Nhal_0331 NC_013960.1 327838 328386 R PFAM: HPr serine kinase domain protein; KEGG: noc:Noc_2796 HPr kinase/phosphorylase; HPr serine kinase domain-containing protein complement(327838..328386) Nitrosococcus halophilus Nc4 8915299 YP_003525915.1 CDS Nhal_0332 NC_013960.1 328402 328884 R TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: noc:Noc_2795 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; PTS IIA-like nitrogen-regulatory protein PtsN complement(328402..328884) Nitrosococcus halophilus Nc4 8915300 YP_003525916.1 CDS Nhal_0333 NC_013960.1 328898 329224 R TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: noc:Noc_2794 sigma 54 modulation protein/ribosomal protein S30EA; ribosomal subunit interface protein complement(328898..329224) Nitrosococcus halophilus Nc4 8915301 YP_003525917.1 CDS Nhal_0334 NC_013960.1 329251 330699 R TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor; KEGG: noc:Noc_2793 sigma-54, RpoN; RNA polymerase sigma-54 factor, RpoN complement(329251..330699) Nitrosococcus halophilus Nc4 8915302 YP_003525918.1 CDS Nhal_0335 NC_013960.1 330767 331492 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_2792 ABC transporter ATPase; ABC transporter complement(330767..331492) Nitrosococcus halophilus Nc4 8915303 YP_003525919.1 CDS Nhal_0336 NC_013960.1 331506 332333 R TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; SH3 type 3 domain protein; KEGG: noc:Noc_2791 OstA-like protein; lipopolysaccharide transport periplasmic protein LptA complement(331506..332333) Nitrosococcus halophilus Nc4 8915304 YP_003525920.1 CDS Nhal_0337 NC_013960.1 332311 332754 R PFAM: protein of unknown function DUF1239; KEGG: noc:Noc_2790 hypothetical protein; hypothetical protein complement(332311..332754) Nitrosococcus halophilus Nc4 8915305 YP_003525921.1 CDS Nhal_0338 NC_013960.1 332882 333403 R TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: noc:Noc_2789 phosphatase KdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(332882..333403) Nitrosococcus halophilus Nc4 8915306 YP_003525922.1 CDS Nhal_0339 NC_013960.1 333425 334441 R KEGG: noc:Noc_2788 sugar phosphate isomerase involved in capsule formation, KpsF/GutQ; TIGRFAM: KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; SMART: CBS domain containing protein; KpsF/GutQ family protein complement(333425..334441) Nitrosococcus halophilus Nc4 8915307 YP_003525923.1 CDS Nhal_0340 NC_013960.1 334583 335365 R PFAM: VacJ family lipoprotein; KEGG: noc:Noc_2787 VacJ-like lipoprotein; VacJ family lipoprotein complement(334583..335365) Nitrosococcus halophilus Nc4 8915308 YP_003525924.1 CDS Nhal_0341 NC_013960.1 335877 336752 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_2786 ABC transporter ATPase; ABC transporter 335877..336752 Nitrosococcus halophilus Nc4 8915309 YP_003525925.1 CDS Nhal_0342 NC_013960.1 336749 337531 D PFAM: protein of unknown function DUF140; KEGG: noc:Noc_2785 hypothetical protein; hypothetical protein 336749..337531 Nitrosococcus halophilus Nc4 8915310 YP_003525926.1 CDS Nhal_0343 NC_013960.1 337533 338000 D PFAM: hypothetical protein; KEGG: noc:Noc_2784 ABC-type transporter involved in resistance to organic solvents periplasmic component; ABC transporter substrate-binding protein 337533..338000 Nitrosococcus halophilus Nc4 8915311 YP_003525927.1 CDS Nhal_0344 NC_013960.1 338079 338720 D PFAM: toluene tolerance protein; KEGG: noc:Noc_2782 toluene tolerance protein; toluene tolerance protein 338079..338720 Nitrosococcus halophilus Nc4 8915312 YP_003525928.1 CDS Nhal_0345 NC_013960.1 338721 339086 D PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: noc:Noc_2783 sulfate transporter/antisigma-factor antagonist STAS; sulfate transporter/antisigma-factor antagonist STAS 338721..339086 Nitrosococcus halophilus Nc4 8915313 YP_003525929.1 CDS Nhal_0347 NC_013960.1 339649 340293 D PFAM: toluene tolerance protein; KEGG: noc:Noc_2782 toluene tolerance protein; toluene tolerance protein 339649..340293 Nitrosococcus halophilus Nc4 8915315 YP_003525930.1 CDS Nhal_0348 NC_013960.1 340390 340617 D PFAM: BolA family protein; KEGG: noc:Noc_2781 BolA-like protein; BolA family protein 340390..340617 Nitrosococcus halophilus Nc4 8915316 YP_003525931.1 CDS Nhal_0349 NC_013960.1 340678 341973 D TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: noc:Noc_2780 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 340678..341973 Nitrosococcus halophilus Nc4 8915317 YP_003525932.1 CDS Nhal_0350 NC_013960.1 341966 342607 D KEGG: noc:Noc_2779 ATP phosphoribosyltransferase catalytic subunit; TIGRFAM: ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; ATP phosphoribosyltransferase 341966..342607 Nitrosococcus halophilus Nc4 8915318 YP_003525933.1 CDS Nhal_0351 NC_013960.1 342600 343901 D KEGG: noc:Noc_2778 histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; PFAM: histidinol dehydrogenase; histidinol dehydrogenase 342600..343901 Nitrosococcus halophilus Nc4 8915319 YP_003525934.1 CDS Nhal_0352 NC_013960.1 343904 344980 D TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; Allinase-like; KEGG: noc:Noc_2777 histidinol-phosphate aminotransferase; histidinol-phosphate aminotransferase 343904..344980 Nitrosococcus halophilus Nc4 8915320 YP_003525935.1 CDS Nhal_0353 NC_013960.1 345295 346053 D PFAM: protein of unknown function DUF34; KEGG: pap:PSPA7_5016 hypothetical protein; hypothetical protein 345295..346053 Nitrosococcus halophilus Nc4 8915321 YP_003525936.1 CDS Nhal_0354 NC_013960.1 346157 347050 R PFAM: formate/nitrite transporter; KEGG: noc:Noc_0109 formate/nitrite transporter; formate/nitrite transporter complement(346157..347050) Nitrosococcus halophilus Nc4 8915322 YP_003525937.1 CDS Nhal_0355 NC_013960.1 347601 347822 D hypothetical protein 347601..347822 Nitrosococcus halophilus Nc4 8915323 YP_003525938.1 CDS Nhal_0357 NC_013960.1 347958 349070 R PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: dps:DP1198 glutamate dehydrogenase; glutamate dehydrogenase (NAD(P)(+)) complement(347958..349070) Nitrosococcus halophilus Nc4 8915325 YP_003525939.1 CDS Nhal_0358 NC_013960.1 349338 350495 D TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0442 transposase; transposase, IS605 OrfB family 349338..350495 Nitrosococcus halophilus Nc4 8915326 YP_003525940.1 CDS Nhal_0359 NC_013960.1 350722 351744 D TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase; KEGG: noc:Noc_2960 tRNA-dihydrouridine synthase A; TIM-barrel protein, yjbN family 350722..351744 Nitrosococcus halophilus Nc4 8915327 YP_003525941.1 CDS Nhal_0360 NC_013960.1 351830 353086 R KEGG: noc:Noc_2963 hypothetical protein; hypothetical protein complement(351830..353086) Nitrosococcus halophilus Nc4 8915328 YP_003525942.1 CDS Nhal_0361 NC_013960.1 353076 354122 R PFAM: ATPase associated with various cellular activities AAA_3; ATPase AAA; SMART: AAA ATPase; KEGG: noc:Noc_2964 hypothetical protein; ATPase AAA complement(353076..354122) Nitrosococcus halophilus Nc4 8915329 YP_003525943.1 CDS Nhal_0362 NC_013960.1 354142 355599 R PFAM: amidohydrolase 2; KEGG: nmu:Nmul_A0625 amidohydrolase 2; amidohydrolase complement(354142..355599) Nitrosococcus halophilus Nc4 8915330 YP_003525944.1 CDS Nhal_0363 NC_013960.1 355725 357893 R PFAM: lytic transglycosylase catalytic; peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: noc:Noc_2988 lytic transglycosylase; lytic transglycosylase complement(355725..357893) Nitrosococcus halophilus Nc4 8915331 YP_003525945.1 CDS Nhal_0364 NC_013960.1 358248 358715 D KEGG: noc:Noc_2987 hypothetical protein; hypothetical protein 358248..358715 Nitrosococcus halophilus Nc4 8915332 YP_003525946.1 CDS Nhal_0365 NC_013960.1 358814 359263 D KEGG: noc:Noc_2986 PAS domain-containing protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; PAS domain containing protein; PAS sensor protein 358814..359263 Nitrosococcus halophilus Nc4 8915333 YP_003525947.1 CDS Nhal_0366 NC_013960.1 359390 360013 D KEGG: noc:Noc_2985 hypothetical protein; hypothetical protein 359390..360013 Nitrosococcus halophilus Nc4 8915334 YP_003525948.1 CDS Nhal_0367 NC_013960.1 360022 360678 D KEGG: noc:Noc_2984 hypothetical protein; hypothetical protein 360022..360678 Nitrosococcus halophilus Nc4 8915335 YP_003525949.1 CDS Nhal_0368 NC_013960.1 360758 360940 D hypothetical protein 360758..360940 Nitrosococcus halophilus Nc4 8915336 YP_003525950.1 CDS Nhal_0369 NC_013960.1 361028 362473 D PFAM: pyridoxal-dependent decarboxylase; KEGG: noc:Noc_2983 aromatic-L-amino-acid decarboxylase; pyridoxal-dependent decarboxylase 361028..362473 Nitrosococcus halophilus Nc4 8915337 YP_003525951.1 CDS Nhal_0370 NC_013960.1 362475 363113 R PFAM: CDP-alcohol phosphatidyltransferase; KEGG: noc:Noc_2982 CDP-alcohol phosphatidyltransferase; CDP-alcohol phosphatidyltransferase complement(362475..363113) Nitrosococcus halophilus Nc4 8915338 YP_003525952.1 CDS Nhal_0371 NC_013960.1 363317 364474 D TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0442 transposase; transposase, IS605 OrfB family 363317..364474 Nitrosococcus halophilus Nc4 8915339 YP_003525953.1 CDS Nhal_0372 NC_013960.1 364744 365907 R PFAM: myo-inositol-1-phosphate synthase; myo-inositol-1-phosphate synthase GAPDH domain protein; KEGG: noc:Noc_2981 myo-inositol-1-phosphate synthase; myo-inositol-1-phosphate synthase complement(364744..365907) Nitrosococcus halophilus Nc4 8915340 YP_003525954.1 CDS Nhal_0373 NC_013960.1 366197 367405 R KEGG: noc:Noc_2980 oxidoreductase; oxidoreductase complement(366197..367405) Nitrosococcus halophilus Nc4 8915341 YP_003525955.1 CDS Nhal_0374 NC_013960.1 367552 369504 D KEGG: noc:Noc_2979 PAS sensor, serine phosphatase RsbU regulator of sigma subunit; TIGRFAM: PAS sensor protein; PFAM: stage II sporulation E family protein; PAS fold domain protein; PAS fold-4 domain protein; PAS fold-3 domain protein; SMART: protein phosphatase 2C domain protein; PAC repeat-containing protein; PAS domain containing protein; PAS sensor protein 367552..369504 Nitrosococcus halophilus Nc4 8915342 YP_003525956.1 CDS Nhal_0376 NC_013960.1 370021 372249 D PFAM: oligosaccharyl transferase STT3 subunit; KEGG: wsu:WS0043 oligosaccharyltransferase; oligosaccharyl transferase STT3 subunit 370021..372249 Nitrosococcus halophilus Nc4 8915344 YP_003525957.1 CDS Nhal_0377 NC_013960.1 372593 373969 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pna:Pnap_1699 HNH endonuclease; HNH endonuclease 372593..373969 Nitrosococcus halophilus Nc4 8915345 YP_003525958.1 CDS Nhal_0378 NC_013960.1 374033 374989 D PFAM: glycosyl transferase family 2; KEGG: amc:MADE_02590 glycosyl transferase, family 2; family 2 glycosyl transferase 374033..374989 Nitrosococcus halophilus Nc4 8915346 YP_003525959.1 CDS Nhal_0379 NC_013960.1 374976 376241 D PFAM: glycosyl transferase group 1; KEGG: amc:MADE_02589 glycosyltransferase; group 1 glycosyl transferase 374976..376241 Nitrosococcus halophilus Nc4 8915347 YP_003525960.1 CDS Nhal_0380 NC_013960.1 376238 376963 D PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: mno:Mnod_6874 methyltransferase type 11; type 11 methyltransferase 376238..376963 Nitrosococcus halophilus Nc4 8915348 YP_003525961.1 CDS Nhal_0381 NC_013960.1 376964 378001 D PFAM: glycosyl transferase group 1; KEGG: sat:SYN_00818 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; group 1 glycosyl transferase 376964..378001 Nitrosococcus halophilus Nc4 8915349 YP_003525962.1 CDS Nhal_0382 NC_013960.1 378015 379235 D KEGG: abu:Abu_0685 hypothetical protein; glycosyltransferase 378015..379235 Nitrosococcus halophilus Nc4 8915350 YP_003525963.1 CDS Nhal_0383 NC_013960.1 379461 384515 D TIGRFAM: methyltransferase FkbM family; PFAM: glycosyl transferase group 1; KEGG: ppg:PputGB1_1389 methyltransferase type 12; FkbM family methyltransferase 379461..384515 Nitrosococcus halophilus Nc4 8915351 YP_003525964.1 CDS Nhal_0384 NC_013960.1 384616 385425 D KEGG: pub:SAR11_0555 CMAS family protein; hypothetical protein 384616..385425 Nitrosococcus halophilus Nc4 8915352 YP_003525965.1 CDS Nhal_0386 NC_013960.1 385802 386689 R KEGG: maq:Maqu_2626 hypothetical protein; hypothetical protein complement(385802..386689) Nitrosococcus halophilus Nc4 8915354 YP_003525966.1 CDS Nhal_0387 NC_013960.1 386921 387157 R hypothetical protein complement(386921..387157) Nitrosococcus halophilus Nc4 8915355 YP_003525967.1 CDS Nhal_0388 NC_013960.1 387247 387441 R hypothetical protein complement(387247..387441) Nitrosococcus halophilus Nc4 8915356 YP_003525968.1 CDS Nhal_0391 NC_013960.1 388330 388575 R hypothetical protein complement(388330..388575) Nitrosococcus halophilus Nc4 8915359 YP_003525969.1 CDS Nhal_0392 NC_013960.1 388605 391280 D KEGG: bpt:Bpet2300 hypothetical protein; hypothetical protein 388605..391280 Nitrosococcus halophilus Nc4 8915360 YP_003525970.1 CDS Nhal_0393 NC_013960.1 391314 392339 D PFAM: polysaccharide biosynthesis protein CapD; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: gme:Gmet_0458 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein CapD 391314..392339 Nitrosococcus halophilus Nc4 8915361 YP_003525971.1 CDS Nhal_0394 NC_013960.1 392373 393275 D PFAM: protein of unknown function DUF343; KEGG: sdn:Sden_1760 methyltransferase type 11; hypothetical protein 392373..393275 Nitrosococcus halophilus Nc4 8915362 YP_003525972.1 CDS Nhal_0395 NC_013960.1 393313 393600 D hypothetical protein 393313..393600 Nitrosococcus halophilus Nc4 8915363 YP_003525973.1 CDS Nhal_0396 NC_013960.1 393597 394757 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: har:HEAR1121 polysaccharide biosynthesis protein; DegT/DnrJ/EryC1/StrS aminotransferase 393597..394757 Nitrosococcus halophilus Nc4 8915364 YP_003525974.1 CDS Nhal_0397 NC_013960.1 394754 395479 D PFAM: acylneuraminate cytidylyltransferase; KEGG: aeh:Mlg_2324 acylneuraminate cytidylyltransferase; acylneuraminate cytidylyltransferase 394754..395479 Nitrosococcus halophilus Nc4 8915365 YP_003525975.1 CDS Nhal_0398 NC_013960.1 395476 396984 D PFAM: GCN5-related N-acetyltransferase; KEGG: pfo:Pfl01_1522 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 395476..396984 Nitrosococcus halophilus Nc4 8915366 YP_003525976.1 CDS Nhal_0399 NC_013960.1 396988 398043 D PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: pfo:Pfl01_1523 N-acetylneuraminate synthase; N-acylneuraminate-9-phosphate synthase 396988..398043 Nitrosococcus halophilus Nc4 8915367 YP_003525977.1 CDS Nhal_0400 NC_013960.1 398059 399084 D KEGG: rfr:Rfer_0680 heparinase II/III-like; hypothetical protein 398059..399084 Nitrosococcus halophilus Nc4 8915368 YP_003525978.1 CDS Nhal_0401 NC_013960.1 399108 400331 D PFAM: transposase mutator type; KEGG: son:SO_0708 transposase mutator family protein; transposase mutator type 399108..400331 Nitrosococcus halophilus Nc4 8915369 YP_003525979.1 CDS Nhal_0402 NC_013960.1 400328 401266 D PFAM: Heparinase II/III; KEGG: hypothetical protein; Heparinase II/III 400328..401266 Nitrosococcus halophilus Nc4 8915370 YP_003525980.1 CDS Nhal_0403 NC_013960.1 402176 403738 D PFAM: glycosyl transferase group 1; KEGG: aeh:Mlg_0137 glycosyl transferase, group 1; group 1 glycosyl transferase 402176..403738 Nitrosococcus halophilus Nc4 8915371 YP_003525981.1 CDS Nhal_0404 NC_013960.1 404072 405814 D KEGG: ppg:PputGB1_1386 hypothetical protein; hypothetical protein 404072..405814 Nitrosococcus halophilus Nc4 8915372 YP_003525982.1 CDS Nhal_0405 NC_013960.1 405857 410635 R PFAM: NAD-glutamate dehydrogenase; KEGG: noc:Noc_2978 NAD-glutamate dehydrogenase; NAD-glutamate dehydrogenase complement(405857..410635) Nitrosococcus halophilus Nc4 8915373 YP_003525983.1 CDS Nhal_0406 NC_013960.1 410890 411315 R PFAM: ATP-binding region ATPase domain protein; KEGG: noc:Noc_2977 anti-sigma regulatory factor (Ser/Thr protein kinase; ATP-binding region ATPase domain-containing protein complement(410890..411315) Nitrosococcus halophilus Nc4 8915374 YP_003525984.1 CDS Nhal_0407 NC_013960.1 411369 411665 R PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: noc:Noc_2976 anti-sigma factor antagonist; sulfate transporter/antisigma-factor antagonist STAS complement(411369..411665) Nitrosococcus halophilus Nc4 8915375 YP_003525985.1 CDS Nhal_0408 NC_013960.1 411899 413401 D PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: ATPase AAA; single-stranded nucleic acid binding R3H domain protein; KEGG: noc:Noc_2975 single-stranded nucleic acid binding R3H; single-stranded nucleic acid binding R3H domain-containing protein 411899..413401 Nitrosococcus halophilus Nc4 8915376 YP_003525986.1 CDS Nhal_0409 NC_013960.1 413446 413847 R PFAM: DoxX family protein; KEGG: noc:Noc_2974 DoxX; DoxX family protein complement(413446..413847) Nitrosococcus halophilus Nc4 8915377 YP_003525987.1 CDS Nhal_0410 NC_013960.1 414017 417178 D PFAM: glycoside hydrolase family 31; glycoside hydrolase starch-binding; KEGG: pin:Ping_2529 glycoside hydrolase family protein; glycoside hydrolase family protein 414017..417178 Nitrosococcus halophilus Nc4 8915378 YP_003525988.1 CDS Nhal_0411 NC_013960.1 417443 418351 R KEGG: mmw:Mmwyl1_3673 hypothetical protein; hypothetical protein complement(417443..418351) Nitrosococcus halophilus Nc4 8915379 YP_003525989.1 CDS Nhal_0412 NC_013960.1 418695 422549 D PFAM: FAD linked oxidase; KEGG: tgr:Tgr7_2778 FAD linked oxidase domain-containing protein; FAD linked oxidase 418695..422549 Nitrosococcus halophilus Nc4 8915380 YP_003525990.1 CDS Nhal_0413 NC_013960.1 422638 423099 R KEGG: tgr:Tgr7_2593 hypothetical protein; hypothetical protein complement(422638..423099) Nitrosococcus halophilus Nc4 8915381 YP_003525991.1 CDS Nhal_0414 NC_013960.1 423585 425012 D KEGG: noc:Noc_2973 hypothetical protein; hypothetical protein 423585..425012 Nitrosococcus halophilus Nc4 8915382 YP_003525992.1 CDS Nhal_0415 NC_013960.1 425077 425640 D PFAM: FMN-binding domain protein; KEGG: noc:Noc_2972 hypothetical protein; FMN-binding domain-containing protein 425077..425640 Nitrosococcus halophilus Nc4 8915383 YP_003525993.1 CDS Nhal_0416 NC_013960.1 425640 426620 D KEGG: mca:MCA2732 hypothetical protein; hypothetical protein 425640..426620 Nitrosococcus halophilus Nc4 8915384 YP_003525994.1 CDS Nhal_0417 NC_013960.1 426691 427221 D PFAM: cytochrome C oxidase subunit II; KEGG: noc:Noc_2971 cytochrome C oxidase subunit II; cytochrome C oxidase subunit II 426691..427221 Nitrosococcus halophilus Nc4 8915385 YP_003525995.1 CDS Nhal_0418 NC_013960.1 427262 428737 D PFAM: cytochrome C oxidase subunit I; KEGG: noc:Noc_2970 cytochrome C oxidase subunit I; cytochrome C oxidase subunit I 427262..428737 Nitrosococcus halophilus Nc4 8915386 YP_003525996.1 CDS Nhal_0419 NC_013960.1 429007 429633 D PFAM: electron transporter SCO1/SenC; KEGG: noc:Noc_2969 electron transporter SCO1/SenC; electron transporter SCO1/SenC 429007..429633 Nitrosococcus halophilus Nc4 8915387 YP_003525997.1 CDS Nhal_0420 NC_013960.1 429623 430231 D KEGG: noc:Noc_2968 transmembrane protein; transmembrane protein 429623..430231 Nitrosococcus halophilus Nc4 8915388 YP_003525998.1 CDS Nhal_0421 NC_013960.1 430309 430770 R TIGRFAM: Rrf2 family transcriptional regulator; PFAM: protein of unknown function UPF0074; KEGG: noc:Noc_2967 hypothetical protein; Rrf2 family transcriptional regulator complement(430309..430770) Nitrosococcus halophilus Nc4 8915389 YP_003525999.1 CDS Nhal_0422 NC_013960.1 430887 434549 R PFAM: hydantoinase B/oxoprolinase; hydantoinaseoxoprolinase domain protein; hydantoinase/oxoprolinase; KEGG: noc:Noc_0378 5-oxoprolinase (ATP-hydrolyzing); 5-oxoprolinase complement(430887..434549) Nitrosococcus halophilus Nc4 8915390 YP_003526000.1 CDS Nhal_0423 NC_013960.1 434791 435948 D TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0442 transposase; transposase, IS605 OrfB family 434791..435948 Nitrosococcus halophilus Nc4 8915391 YP_003526001.1 CDS Nhal_0424 NC_013960.1 436566 436850 D PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: noc:Noc_2966 histone-like DNA-binding protein; histone family protein DNA-binding protein 436566..436850 Nitrosococcus halophilus Nc4 8915392 YP_003526002.1 CDS Nhal_0425 NC_013960.1 437127 437555 D hypothetical protein 437127..437555 Nitrosococcus halophilus Nc4 8915393 YP_003526003.1 CDS Nhal_0426 NC_013960.1 437710 438624 R KEGG: sfr:Sfri_0093 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase complement(437710..438624) Nitrosococcus halophilus Nc4 8915394 YP_003526004.1 CDS Nhal_0427 NC_013960.1 438864 440087 R PFAM: transposase mutator type; KEGG: son:SO_0708 transposase mutator family protein; transposase mutator type complement(438864..440087) Nitrosococcus halophilus Nc4 8915395 YP_003526005.1 CDS Nhal_0428 NC_013960.1 440194 440682 D KEGG: spe:Spro_4285 zinc transporter ZupT; zinc transporter ZupT 440194..440682 Nitrosococcus halophilus Nc4 8915396 YP_003526006.1 CDS Nhal_0429 NC_013960.1 440708 441328 D PFAM: Resolvase domain; MerR family transcriptional regulator; KEGG: xfm:Xfasm12_1564 hypothetical protein; resolvase 440708..441328 Nitrosococcus halophilus Nc4 8915397 YP_003526007.1 CDS Nhal_0430 NC_013960.1 441306 442460 D TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0401 transposase; transposase, IS605 OrfB family 441306..442460 Nitrosococcus halophilus Nc4 8915398 YP_003526008.1 CDS Nhal_0431 NC_013960.1 442504 443238 D KEGG: dat:HRM2_15520 selenocysteine protein; selenocysteine protein 442504..443238 Nitrosococcus halophilus Nc4 8915399 YP_003526009.1 CDS Nhal_0432 NC_013960.1 443331 443963 R PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: gur:Gura_3459 diguanylate cyclase with PAS/PAC sensor; type 11 methyltransferase complement(443331..443963) Nitrosococcus halophilus Nc4 8915400 YP_003526010.1 CDS Nhal_0435 NC_013960.1 445065 445163 D hypothetical protein 445065..445163 Nitrosococcus halophilus Nc4 8915403 YP_003526011.1 CDS Nhal_0436 NC_013960.1 445495 447666 D KEGG: noc:Noc_2897 ribonuclease R; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; ribonuclease B OB region domain; RNA binding S1 domain protein; ribonuclease R winged-helix domain protein; SMART: Cold shock protein; RNA binding S1 domain protein; ribonuclease R 445495..447666 Nitrosococcus halophilus Nc4 8915405 YP_003526012.1 CDS Nhal_0437 NC_013960.1 447834 449417 R PFAM: multicopper oxidase type 3; multicopper oxidase type 2; KEGG: neu:NE0782 periplasmic cell division protein (SufI); Bilirubin oxidase complement(447834..449417) Nitrosococcus halophilus Nc4 8915406 YP_003526013.1 CDS Nhal_0438 NC_013960.1 449592 450512 R KEGG: noc:Noc_2896 phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related; phosphatidylserine decarboxylase complement(449592..450512) Nitrosococcus halophilus Nc4 8915407 YP_003526014.1 CDS Nhal_0439 NC_013960.1 450748 452490 D KEGG: noc:Noc_2895 type II secretion system protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; general secretory system protein E; SMART: AAA ATPase; general secretory pathway protein E 450748..452490 Nitrosococcus halophilus Nc4 8915408 YP_003526015.1 CDS Nhal_0440 NC_013960.1 452493 453725 D PFAM: type II secretion system protein; KEGG: noc:Noc_2894 general secretion pathway protein F; type II secretion system protein 452493..453725 Nitrosococcus halophilus Nc4 8915409 YP_003526016.1 CDS Nhal_0441 NC_013960.1 453741 454175 D TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: noc:Noc_2893 general secretion pathway protein G; general secretion pathway protein G 453741..454175 Nitrosococcus halophilus Nc4 8915410 YP_003526017.1 CDS Nhal_0442 NC_013960.1 454218 454754 D TIGRFAM: general secretion pathway protein H; KEGG: noc:Noc_2892 general secretion pathway protein H; general secretion pathway protein H 454218..454754 Nitrosococcus halophilus Nc4 8915411 YP_003526018.1 CDS Nhal_0443 NC_013960.1 454747 455190 D KEGG: noc:Noc_2891 general secretion pathway protein H; general secretion pathway protein H 454747..455190 Nitrosococcus halophilus Nc4 8915412 YP_003526019.1 CDS Nhal_0444 NC_013960.1 455303 456520 D KEGG: noc:Noc_2890 hypothetical protein; hypothetical protein 455303..456520 Nitrosococcus halophilus Nc4 8915413 YP_003526020.1 CDS Nhal_0445 NC_013960.1 456576 457745 D PFAM: glycosyl transferase group 1; KEGG: noc:Noc_2889 glycosyl transferase, group 1; group 1 glycosyl transferase 456576..457745 Nitrosococcus halophilus Nc4 8915414 YP_003526021.1 CDS Nhal_0447 NC_013960.1 458680 459150 D KEGG: noc:Noc_2987 hypothetical protein; hypothetical protein 458680..459150 Nitrosococcus halophilus Nc4 8915416 YP_003526022.1 CDS Nhal_0448 NC_013960.1 459759 460217 D KEGG: noc:Noc_1824 hypothetical protein; hypothetical protein 459759..460217 Nitrosococcus halophilus Nc4 8915417 YP_003526023.1 CDS Nhal_0449 NC_013960.1 460264 461046 D KEGG: noc:Noc_1823 hypothetical protein; hypothetical protein 460264..461046 Nitrosococcus halophilus Nc4 8915418 YP_003526024.1 CDS Nhal_0450 NC_013960.1 461392 462267 D PFAM: fatty acid hydroxylase; KEGG: mca:MCA1012 hypothetical protein; fatty acid hydroxylase 461392..462267 Nitrosococcus halophilus Nc4 8915419 YP_003526025.1 CDS Nhal_0452 NC_013960.1 463121 464266 D PFAM: transposase IS4 family protein; KEGG: aby:ABAYE3624 IS4 family transposase; transposase IS4 family protein 463121..464266 Nitrosococcus halophilus Nc4 8915421 YP_003526026.1 CDS Nhal_0453 NC_013960.1 464496 464771 D hypothetical protein 464496..464771 Nitrosococcus halophilus Nc4 8915422 YP_003526027.1 CDS Nhal_0454 NC_013960.1 465128 467182 D KEGG: noc:Noc_0207 protein phosphatase 2C-like, stage II sporulation E; TIGRFAM: PAS sensor protein; PFAM: stage II sporulation E family protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: protein phosphatase 2C domain protein; PAC repeat-containing protein; PAS domain containing protein; PAS sensor protein 465128..467182 Nitrosococcus halophilus Nc4 8915423 YP_003526028.1 CDS Nhal_0455 NC_013960.1 467254 469293 D PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: noc:Noc_0208 oligopeptidase A; oligopeptidase A 467254..469293 Nitrosococcus halophilus Nc4 8915424 YP_003526029.1 CDS Nhal_0456 NC_013960.1 469293 470066 D TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: endonuclease/exonuclease/phosphatase; KEGG: noc:Noc_0209 exodeoxyribonuclease III xth; exodeoxyribonuclease III Xth 469293..470066 Nitrosococcus halophilus Nc4 8915425 YP_003526030.1 CDS Nhal_0457 NC_013960.1 470119 471930 D SMART: hypothetical protein; KEGG: noc:Noc_0210 hypothetical protein; hypothetical protein 470119..471930 Nitrosococcus halophilus Nc4 8915426 YP_003526031.1 CDS Nhal_0458 NC_013960.1 471971 473434 D TIGRFAM: UbiD family decarboxylase; PFAM: carboxylyase-related protein; KEGG: noc:Noc_0211 carboxylyase-like protein; UbiD family decarboxylase 471971..473434 Nitrosococcus halophilus Nc4 8915427 YP_003526032.1 CDS Nhal_0459 NC_013960.1 473423 473587 R hypothetical protein complement(473423..473587) Nitrosococcus halophilus Nc4 8915428 YP_003526033.1 CDS Nhal_0460 NC_013960.1 473706 474326 D PFAM: CDP-alcohol phosphatidyltransferase; KEGG: noc:Noc_0213 CDP-alcohol phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 473706..474326 Nitrosococcus halophilus Nc4 8915429 YP_003526034.1 CDS Nhal_0461 NC_013960.1 474427 474756 D PFAM: type IV pilus assembly PilZ; KEGG: noc:Noc_0214 hypothetical protein; type IV pilus assembly PilZ 474427..474756 Nitrosococcus halophilus Nc4 8915430 YP_003526035.1 CDS Nhal_0462 NC_013960.1 474855 475100 R KEGG: noc:Noc_0215 hypothetical protein; hypothetical protein complement(474855..475100) Nitrosococcus halophilus Nc4 8915431 YP_003526036.1 CDS Nhal_0463 NC_013960.1 475134 476423 R KEGG: geo:Geob_0338 hypothetical protein; hypothetical protein complement(475134..476423) Nitrosococcus halophilus Nc4 8915432 YP_003526037.1 CDS Nhal_0464 NC_013960.1 476588 477052 D KEGG: cps:CPS_3386 hypothetical protein; hypothetical protein 476588..477052 Nitrosococcus halophilus Nc4 8915433 YP_003526038.1 CDS Nhal_0465 NC_013960.1 477081 477842 R TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tgr:Tgr7_0283 HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase complement(477081..477842) Nitrosococcus halophilus Nc4 8915434 YP_003526039.1 CDS Nhal_0466 NC_013960.1 478027 478653 R PFAM: protein of unknown function DUF330; KEGG: ank:AnaeK_0375 ABC-type uncharacterized transporter auxiliary component-like protein; hypothetical protein complement(478027..478653) Nitrosococcus halophilus Nc4 8915435 YP_003526040.1 CDS Nhal_0467 NC_013960.1 478657 479661 R PFAM: hypothetical protein; KEGG: cbg:CbuG_1274 hypothetical protein; hypothetical protein complement(478657..479661) Nitrosococcus halophilus Nc4 8915436 YP_003526041.1 CDS Nhal_0468 NC_013960.1 479646 480431 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pfl:PFL_0099 ABC transporter ATP-binding protein; ABC transporter complement(479646..480431) Nitrosococcus halophilus Nc4 8915437 YP_003526042.1 CDS Nhal_0469 NC_013960.1 480433 481575 R PFAM: protein of unknown function DUF140; KEGG: aeh:Mlg_1205 hypothetical protein; hypothetical protein complement(480433..481575) Nitrosococcus halophilus Nc4 8915438 YP_003526043.1 CDS Nhal_0470 NC_013960.1 481665 481967 R KEGG: noc:Noc_0351 hypothetical protein; hypothetical protein complement(481665..481967) Nitrosococcus halophilus Nc4 8915439 YP_003526044.1 CDS Nhal_0471 NC_013960.1 482241 483671 R PFAM: FAD linked oxidase; KEGG: noc:Noc_0352 D-lactate dehydrogenase (cytochrome); FAD linked oxidase complement(482241..483671) Nitrosococcus halophilus Nc4 8915440 YP_003526045.1 CDS Nhal_0472 NC_013960.1 483640 484239 R PFAM: transport-associated; SMART: transport-associated and nodulation region; KEGG: noc:Noc_0353 periplasmic or secreted lipoprotein; transporter complement(483640..484239) Nitrosococcus halophilus Nc4 8915441 YP_003526046.1 CDS Nhal_0473 NC_013960.1 484243 484833 R TIGRFAM: phosphoheptose isomerase; KEGG: noc:Noc_0354 phosphoheptose isomerase; phosphoheptose isomerase complement(484243..484833) Nitrosococcus halophilus Nc4 8915442 YP_003526047.1 CDS Nhal_0474 NC_013960.1 484962 485333 R PFAM: protein of unknown function UPF0102; KEGG: noc:Noc_0355 hypothetical protein; hypothetical protein complement(484962..485333) Nitrosococcus halophilus Nc4 8915443 YP_003526048.1 CDS Nhal_0475 NC_013960.1 485330 487246 R PFAM: LppC family lipoprotein; KEGG: noc:Noc_0356 LppC lipoprotein; LppC family lipoprotein complement(485330..487246) Nitrosococcus halophilus Nc4 8915444 YP_003526049.1 CDS Nhal_0476 NC_013960.1 487301 488158 D PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: noc:Noc_0357 hypothetical protein; uroporphyrin-III C/tetrapyrrole methyltransferase 487301..488158 Nitrosococcus halophilus Nc4 8915445 YP_003526050.1 CDS Nhal_0477 NC_013960.1 488160 489539 R PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: pfo:Pfl01_3771 periplasmic sensor signal transduction histidine kinase; ATP-binding region ATPase domain-containing protein complement(488160..489539) Nitrosococcus halophilus Nc4 8915446 YP_003526051.1 CDS Nhal_0478 NC_013960.1 489616 490287 R PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: tmz:Tmz1t_1913 transcriptional regulator; response regulator receiver complement(489616..490287) Nitrosococcus halophilus Nc4 8915447 YP_003526052.1 CDS Nhal_0479 NC_013960.1 490473 490793 R KEGG: ppw:PputW619_1786 peptidase; hypothetical protein complement(490473..490793) Nitrosococcus halophilus Nc4 8915448 YP_003526053.1 CDS Nhal_0480 NC_013960.1 491010 491933 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: noc:Noc_2871 cation efflux protein; cation diffusion facilitator family transporter 491010..491933 Nitrosococcus halophilus Nc4 8915449 YP_003526054.1 CDS Nhal_0481 NC_013960.1 492551 493000 D TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: noc:Noc_2870 hypothetical protein; MraZ protein 492551..493000 Nitrosococcus halophilus Nc4 8915451 YP_003526055.1 CDS Nhal_0482 NC_013960.1 493010 493963 D TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: noc:Noc_2869 methyltransferase; S-adenosyl-methyltransferase MraW 493010..493963 Nitrosococcus halophilus Nc4 8915452 YP_003526056.1 CDS Nhal_0483 NC_013960.1 493980 494252 D TIGRFAM: cell division protein FtsL; PFAM: cell division protein FtsL; KEGG: noc:Noc_2868 cell division protein, FtsL -like; cell division protein FtsL 493980..494252 Nitrosococcus halophilus Nc4 8915453 YP_003526057.1 CDS Nhal_0484 NC_013960.1 494257 495960 D PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: noc:Noc_2867 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 494257..495960 Nitrosococcus halophilus Nc4 8915454 YP_003526058.1 CDS Nhal_0485 NC_013960.1 495969 497540 D TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: noc:Noc_2866 UDP-N-acetylmuramyl-tripeptide synthetase; UDP-N-acetylmuramyl-tripeptide synthetase 495969..497540 Nitrosococcus halophilus Nc4 8915455 YP_003526059.1 CDS Nhal_0486 NC_013960.1 497558 498904 D TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: noc:Noc_2865 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D -alanyl ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase 497558..498904 Nitrosococcus halophilus Nc4 8915456 YP_003526060.1 CDS Nhal_0487 NC_013960.1 498909 499985 D KEGG: noc:Noc_2864 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: glycosyl transferase family 4; phospho-N-acetylmuramoyl-pentapeptide- transferase 498909..499985 Nitrosococcus halophilus Nc4 8915457 YP_003526061.1 CDS Nhal_0488 NC_013960.1 500066 501424 D TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: noc:Noc_2863 UDP-N-acetylmuramoylalanine-D-glutamate ligase; UDP-N-acetylmuramoylalanine/D-glutamate ligase 500066..501424 Nitrosococcus halophilus Nc4 8915458 YP_003526062.1 CDS Nhal_0489 NC_013960.1 501421 502584 D TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: noc:Noc_2862 cell cycle protein, FtsW; cell division protein FtsW 501421..502584 Nitrosococcus halophilus Nc4 8915459 YP_003526063.1 CDS Nhal_0490 NC_013960.1 502581 503663 D KEGG: noc:Noc_2861 N-acetylglucosaminyltransferase, MurG; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase family 28; glycosyltransferase 28 domain; UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 502581..503663 Nitrosococcus halophilus Nc4 8915460 YP_003526064.1 CDS Nhal_0491 NC_013960.1 503656 505086 D TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: noc:Noc_2860 UDP-N-acetylmuramate--alanine ligase; UDP-N-acetylmuramate/alanine ligase 503656..505086 Nitrosococcus halophilus Nc4 8915461 YP_003526065.1 CDS Nhal_0492 NC_013960.1 505086 505982 D KEGG: noc:Noc_2859 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase 505086..505982 Nitrosococcus halophilus Nc4 8915462 YP_003526066.1 CDS Nhal_0493 NC_013960.1 505979 506929 D KEGG: noc:Noc_2858 D-alanine--D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; D-alanine--D-alanine ligase 505979..506929 Nitrosococcus halophilus Nc4 8915463 YP_003526067.1 CDS Nhal_0494 NC_013960.1 506919 507719 D PFAM: cell division protein FtsQ; polypeptide-transport-associated domain protein FtsQ-type; KEGG: noc:Noc_2857 cell division protein FtsQ; cell division protein FtsQ 506919..507719 Nitrosococcus halophilus Nc4 8915464 YP_003526068.1 CDS Nhal_0495 NC_013960.1 507712 508947 D TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA; KEGG: noc:Noc_2856 cell division protein FtsA; cell division protein FtsA 507712..508947 Nitrosococcus halophilus Nc4 8915465 YP_003526069.1 CDS Nhal_0496 NC_013960.1 509012 510169 D TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: noc:Noc_2855 cell division protein FtsZ; cell division protein FtsZ 509012..510169 Nitrosococcus halophilus Nc4 8915466 YP_003526070.1 CDS Nhal_0497 NC_013960.1 510304 511215 D TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; KEGG: noc:Noc_2854 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; UDP-3-0-acyl N-acetylglucosamine deacetylase 510304..511215 Nitrosococcus halophilus Nc4 8915467 YP_003526071.1 CDS Nhal_0498 NC_013960.1 511253 511783 R PFAM: protein of unknown function DUF721; KEGG: noc:Noc_2853 hypothetical protein; hypothetical protein complement(511253..511783) Nitrosococcus halophilus Nc4 8915468 YP_003526072.1 CDS Nhal_0499 NC_013960.1 511820 512683 D PFAM: peptidase M23; KEGG: noc:Noc_2852 peptidase M23B; peptidase M23 511820..512683 Nitrosococcus halophilus Nc4 8915469 YP_003526073.1 CDS Nhal_0500 NC_013960.1 512868 515594 D TIGRFAM: preprotein translocase subunit SecA; PFAM: SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; SEC-C motif domain protein; KEGG: noc:Noc_2851 SecA protein; preprotein translocase subunit SecA 512868..515594 Nitrosococcus halophilus Nc4 8915470 YP_003526074.1 CDS Nhal_0501 NC_013960.1 515710 516060 D KEGG: noc:Noc_0454 hypothetical protein; hypothetical protein 515710..516060 Nitrosococcus halophilus Nc4 8915471 YP_003526075.1 CDS Nhal_0502 NC_013960.1 516117 517334 D KEGG: noc:Noc_2850 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ; arginine biosynthesis bifunctional protein ArgJ 516117..517334 Nitrosococcus halophilus Nc4 8915472 YP_003526076.1 CDS Nhal_0503 NC_013960.1 517350 517682 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: noc:Noc_2849 Rieske (2Fe-2S) protein; Rieske (2Fe-2S) domain-containing protein complement(517350..517682) Nitrosococcus halophilus Nc4 8915473 YP_003526077.1 CDS Nhal_0504 NC_013960.1 517697 518578 R PFAM: PfkB domain protein; KEGG: noc:Noc_2848 ketohexokinase; PfkB domain-containing protein complement(517697..518578) Nitrosococcus halophilus Nc4 8915474 YP_003526078.1 CDS Nhal_0505 NC_013960.1 518589 519242 R TIGRFAM: adenylate kinase; PFAM: adenylate kinase; adenylate kinase lid domain protein; KEGG: noc:Noc_2847 adenylate kinase; adenylate kinase complement(518589..519242) Nitrosococcus halophilus Nc4 8915475 YP_003526079.1 CDS Nhal_0506 NC_013960.1 519509 520774 D PFAM: phosphofructokinase; KEGG: noc:Noc_2846 6-phosphofructokinase; phosphofructokinase 519509..520774 Nitrosococcus halophilus Nc4 8915476 YP_003526080.1 CDS Nhal_0507 NC_013960.1 520925 521902 R TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: noc:Noc_2845 peptidase S49, SppA; signal peptide peptidase SppA, 36K type complement(520925..521902) Nitrosococcus halophilus Nc4 8915477 YP_003526081.1 CDS Nhal_0508 NC_013960.1 521987 522964 R KEGG: noc:Noc_2844 pseudouridine synthase, RluD; TIGRFAM: pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; pseudouridine synthase complement(521987..522964) Nitrosococcus halophilus Nc4 8915478 YP_003526082.1 CDS Nhal_0509 NC_013960.1 523038 523865 R PFAM: extracellular solute-binding protein family 1; KEGG: eba:ebA3597 molybdate or tungstate transport; family 1 extracellular solute-binding protein complement(523038..523865) Nitrosococcus halophilus Nc4 8915479 YP_003526083.1 CDS Nhal_0510 NC_013960.1 523856 524581 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aeh:Mlg_2739 ABC transporter; ABC transporter complement(523856..524581) Nitrosococcus halophilus Nc4 8915480 YP_003526084.1 CDS Nhal_0511 NC_013960.1 524585 525289 R PFAM: binding-protein-dependent transporters inner membrane component; KEGG: aeh:Mlg_2740 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transporters inner membrane component complement(524585..525289) Nitrosococcus halophilus Nc4 8915481 YP_003526085.1 CDS Nhal_0514 NC_013960.1 526469 526780 R KEGG: noc:Noc_1602 hypothetical protein; hypothetical protein complement(526469..526780) Nitrosococcus halophilus Nc4 8915485 YP_003526086.1 CDS Nhal_0515 NC_013960.1 528320 528802 R PFAM: FlgN family protein; KEGG: noc:Noc_2685 FlgN; FlgN family protein complement(528320..528802) Nitrosococcus halophilus Nc4 8915487 YP_003526087.1 CDS Nhal_0516 NC_013960.1 528813 529127 R PFAM: anti-sigma-28 factor FlgM family protein; KEGG: noc:Noc_2684 anti-sigma-28 factor, FlgM; anti-sigma-28 factor FlgM family protein complement(528813..529127) Nitrosococcus halophilus Nc4 8915488 YP_003526088.1 CDS Nhal_0517 NC_013960.1 529199 529864 R TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; KEGG: noc:Noc_2683 flageller protein FlgA; flagella basal body P-ring formation protein FlgA complement(529199..529864) Nitrosococcus halophilus Nc4 8915489 YP_003526089.1 CDS Nhal_0518 NC_013960.1 530013 530528 R TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: tgr:Tgr7_2950 molybdenum cofactor biosynthesis protein C; molybdenum cofactor biosynthesis protein C complement(530013..530528) Nitrosococcus halophilus Nc4 8915490 YP_003526090.1 CDS Nhal_0519 NC_013960.1 530663 530905 D TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: mca:MCA3054 molybdopterin converting factor, subunit 1; molybdopterin converting factor subunit 1 530663..530905 Nitrosococcus halophilus Nc4 8915491 YP_003526091.1 CDS Nhal_0520 NC_013960.1 530902 531339 D PFAM: molybdopterin biosynthesis MoaE protein; KEGG: tgr:Tgr7_2952 molybdopterin biosynthesis MoaE protein; molybdopterin biosynthesis MoaE protein 530902..531339 Nitrosococcus halophilus Nc4 8915492 YP_003526092.1 CDS Nhal_0521 NC_013960.1 531392 534118 D KEGG: noc:Noc_2682 PAS sensor diguanylate cyclase/phophodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; PAS fold domain protein; hypothetical protein; SMART: EAL domain protein; GGDEF domain containing protein; GAF domain protein; PAS domain containing protein; diguanylate cyclase 531392..534118 Nitrosococcus halophilus Nc4 8915493 YP_003526093.1 CDS Nhal_0522 NC_013960.1 534139 535032 R KEGG: noc:Noc_2680 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase complement(534139..535032) Nitrosococcus halophilus Nc4 8915494 YP_003526094.1 CDS Nhal_0523 NC_013960.1 535172 536485 R KEGG: noc:Noc_2679 S-adenosyl-L-homocysteine hydrolase; TIGRFAM: adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding; adenosylhomocysteinase complement(535172..536485) Nitrosococcus halophilus Nc4 8915495 YP_003526095.1 CDS Nhal_0524 NC_013960.1 536566 537783 R KEGG: noc:Noc_2678 S-adenosylmethionine synthetase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; S-adenosylmethionine synthetase complement(536566..537783) Nitrosococcus halophilus Nc4 8915496 YP_003526096.1 CDS Nhal_0525 NC_013960.1 538088 538267 R PFAM: protein of unknown function DUF343; KEGG: noc:Noc_2677 hypothetical protein; hypothetical protein complement(538088..538267) Nitrosococcus halophilus Nc4 8915497 YP_003526097.1 CDS Nhal_0526 NC_013960.1 538271 539287 R KEGG: noc:Noc_2676 tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase complement(538271..539287) Nitrosococcus halophilus Nc4 8915498 YP_003526098.1 CDS Nhal_0527 NC_013960.1 539274 541067 R KEGG: noc:Noc_2675 lipid A export ATP-binding/permease protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: ATPase AAA; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA complement(539274..541067) Nitrosococcus halophilus Nc4 8915499 YP_003526099.1 CDS Nhal_0528 NC_013960.1 541084 541506 R PFAM: biopolymertransporter ExbD/TolR; KEGG: noc:Noc_2674 biopolymer transporter ExbD/TolR; biopolymertransporter ExbD/TolR complement(541084..541506) Nitrosococcus halophilus Nc4 8915500 YP_003526100.1 CDS Nhal_0529 NC_013960.1 541554 542189 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: noc:Noc_2673 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(541554..542189) Nitrosococcus halophilus Nc4 8915501 YP_003526101.1 CDS Nhal_0530 NC_013960.1 542306 544678 R TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase; KEGG: noc:Noc_2672 DNA internalization-related competence protein ComEC/Rec2; DNA internalization-related competence protein ComEC/Rec2 complement(542306..544678) Nitrosococcus halophilus Nc4 8915502 YP_003526102.1 CDS Nhal_0531 NC_013960.1 544748 545293 D KEGG: noc:Noc_2671 hypothetical protein; hypothetical protein 544748..545293 Nitrosococcus halophilus Nc4 8915503 YP_003526103.1 CDS Nhal_0532 NC_013960.1 545307 546008 R KEGG: noc:Noc_2670 lipoprotein releasing system, ATP-binding protein; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA; lipoprotein releasing system, ATP-binding protein complement(545307..546008) Nitrosococcus halophilus Nc4 8915504 YP_003526104.1 CDS Nhal_0533 NC_013960.1 546001 547248 R TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: noc:Noc_2669 LolC/E family lipoprotein releasing system, transmembrane protein; lipoprotein releasing system, transmembrane protein, LolC/E family complement(546001..547248) Nitrosococcus halophilus Nc4 8915505 YP_003526105.1 CDS Nhal_0534 NC_013960.1 547396 547671 D PFAM: type IV pilus assembly PilZ; KEGG: noc:Noc_2668 hypothetical protein; type IV pilus assembly PilZ 547396..547671 Nitrosococcus halophilus Nc4 8915506 YP_003526106.1 CDS Nhal_0535 NC_013960.1 547700 548362 R KEGG: noc:Noc_2667 ribose-5-phosphate isomerase A; TIGRFAM: ribose 5-phosphate isomerase; PFAM: ribose 5-phosphate isomerase; ribose 5-phosphate isomerase complement(547700..548362) Nitrosococcus halophilus Nc4 8915507 YP_003526107.1 CDS Nhal_0536 NC_013960.1 548463 549992 D TIGRFAM: threonine dehydratase, biosynthetic; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; threonine dehydratase domain protein; KEGG: noc:Noc_2666 threonine dehydratase; threonine dehydratase, biosynthetic 548463..549992 Nitrosococcus halophilus Nc4 8915508 YP_003526108.1 CDS Nhal_0537 NC_013960.1 550065 552524 D TIGRFAM: leucyl-tRNA synthetase; KEGG: noc:Noc_2665 leucyl-tRNA synthetase; leucyl-tRNA synthetase 550065..552524 Nitrosococcus halophilus Nc4 8915509 YP_003526109.1 CDS Nhal_0538 NC_013960.1 552544 553053 D PFAM: Rare lipoprotein B; KEGG: noc:Noc_2664 rare lipoprotein B; Rare lipoprotein B 552544..553053 Nitrosococcus halophilus Nc4 8915510 YP_003526110.1 CDS Nhal_0539 NC_013960.1 553050 554105 D KEGG: noc:Noc_2663 DNA polymerase III delta subunit; TIGRFAM: DNA polymerase III subunit delta; PFAM: DNA polymerase III delta; DNA polymerase III subunit delta 553050..554105 Nitrosococcus halophilus Nc4 8915511 YP_003526111.1 CDS Nhal_0540 NC_013960.1 554176 555432 D TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: aldehyde dehydrogenase; KEGG: noc:Noc_2662 gamma-glutamyl phosphate reductase; gamma-glutamyl phosphate reductase 554176..555432 Nitrosococcus halophilus Nc4 8915512 YP_003526112.1 CDS Nhal_0541 NC_013960.1 555439 556140 D KEGG: noc:Noc_2661 nicotinic acid mononucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 555439..556140 Nitrosococcus halophilus Nc4 8915513 YP_003526113.1 CDS Nhal_0542 NC_013960.1 556140 556490 D TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: noc:Noc_2660 iojap-related protein; iojap-like protein 556140..556490 Nitrosococcus halophilus Nc4 8915514 YP_003526114.1 CDS Nhal_0543 NC_013960.1 556497 556970 D PFAM: protein of unknown function DUF163; KEGG: noc:Noc_2659 hypothetical protein; hypothetical protein 556497..556970 Nitrosococcus halophilus Nc4 8915515 YP_003526115.1 CDS Nhal_0544 NC_013960.1 557079 557687 D TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: noc:Noc_2658 Maf-like protein; maf protein 557079..557687 Nitrosococcus halophilus Nc4 8915516 YP_003526116.1 CDS Nhal_0545 NC_013960.1 557680 559152 D KEGG: noc:Noc_2657 ribonuclease E and G; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; Rne/Rng family ribonuclease 557680..559152 Nitrosococcus halophilus Nc4 8915517 YP_003526117.1 CDS Nhal_0546 NC_013960.1 559176 563036 D KEGG: noc:Noc_2656 hypothetical protein; hypothetical protein 559176..563036 Nitrosococcus halophilus Nc4 8915518 YP_003526118.1 CDS Nhal_0547 NC_013960.1 563162 563989 D PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: noc:Noc_2655 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 563162..563989 Nitrosococcus halophilus Nc4 8915519 YP_003526119.1 CDS Nhal_0548 NC_013960.1 564219 565658 D PFAM: peptidase U62 modulator of DNA gyrase; KEGG: tgr:Tgr7_2267 TldD protein; peptidase U62 modulator of DNA gyrase 564219..565658 Nitrosococcus halophilus Nc4 8915520 YP_003526120.1 CDS Nhal_0549 NC_013960.1 565679 566722 D PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: noc:Noc_2654 hypothetical protein; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 565679..566722 Nitrosococcus halophilus Nc4 8915521 YP_003526121.1 CDS Nhal_0550 NC_013960.1 566777 567013 D PFAM: SirA family protein; KEGG: noc:Noc_2653 SirA-like protein; SirA family protein 566777..567013 Nitrosococcus halophilus Nc4 8915522 YP_003526122.1 CDS Nhal_0551 NC_013960.1 567086 568495 D TIGRFAM: glutamine synthetase; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: noc:Noc_2652 glutamine synthetase type I; glutamine synthetase 567086..568495 Nitrosococcus halophilus Nc4 8915523 YP_003526123.1 CDS Nhal_0552 NC_013960.1 568688 569308 D KEGG: noc:Noc_2650 hypothetical protein; hypothetical protein 568688..569308 Nitrosococcus halophilus Nc4 8915524 YP_003526124.1 CDS Nhal_0553 NC_013960.1 569352 569546 R KEGG: noc:Noc_2649 hypothetical protein; hypothetical protein complement(569352..569546) Nitrosococcus halophilus Nc4 8915525 YP_003526125.1 CDS Nhal_0554 NC_013960.1 569756 570571 R KEGG: noc:Noc_2648 DNA-formamidopyrimidine glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding; formamidopyrimidine-DNA glycosylase complement(569756..570571) Nitrosococcus halophilus Nc4 8915526 YP_003526126.1 CDS Nhal_0555 NC_013960.1 570601 571485 R KEGG: noc:Noc_2647 hypothetical protein; hypothetical protein complement(570601..571485) Nitrosococcus halophilus Nc4 8915527 YP_003526127.1 CDS Nhal_0556 NC_013960.1 571498 572886 R KEGG: noc:Noc_2646 hypothetical protein; hypothetical protein complement(571498..572886) Nitrosococcus halophilus Nc4 8915528 YP_003526128.1 CDS Nhal_0557 NC_013960.1 572932 573693 R KEGG: noc:Noc_2645 ABC transporter permease; ABC transporter permease complement(572932..573693) Nitrosococcus halophilus Nc4 8915529 YP_003526129.1 CDS Nhal_0558 NC_013960.1 573690 574637 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_2644 ABC transporter ATPase; ABC transporter complement(573690..574637) Nitrosococcus halophilus Nc4 8915530 YP_003526130.1 CDS Nhal_0559 NC_013960.1 574704 575153 R PFAM: NUDIX hydrolase; KEGG: noc:Noc_2643 NUDIX hydrolase; NUDIX hydrolase complement(574704..575153) Nitrosococcus halophilus Nc4 8915531 YP_003526131.1 CDS Nhal_0560 NC_013960.1 575303 576472 D PFAM: fatty acid desaturase; KEGG: noc:Noc_2775 fatty acid desaturase; fatty acid desaturase 575303..576472 Nitrosococcus halophilus Nc4 8915532 YP_003526132.1 CDS Nhal_0561 NC_013960.1 576559 576714 R TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: noc:Noc_2641 ribosomal protein L33; 50S ribosomal protein L33 complement(576559..576714) Nitrosococcus halophilus Nc4 8915533 YP_003526133.1 CDS Nhal_0562 NC_013960.1 576727 576963 R TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: noc:Noc_2640 ribosomal protein L28; 50S ribosomal protein L28 complement(576727..576963) Nitrosococcus halophilus Nc4 8915534 YP_003526134.1 CDS Nhal_0563 NC_013960.1 577077 577937 R PFAM: endonuclease/exonuclease/phosphatase; KEGG: noc:Noc_2639 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase complement(577077..577937) Nitrosococcus halophilus Nc4 8915535 YP_003526135.1 CDS Nhal_0564 NC_013960.1 577973 578983 R PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: noc:Noc_2638 UDP-glucuronate 5'-epimerase; NAD-dependent epimerase/dehydratase complement(577973..578983) Nitrosococcus halophilus Nc4 8915536 YP_003526136.1 CDS Nhal_0565 NC_013960.1 579022 580299 R TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: noc:Noc_2637 UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase complement(579022..580299) Nitrosococcus halophilus Nc4 8915537 YP_003526137.1 CDS Nhal_0566 NC_013960.1 580393 581844 R KEGG: noc:Noc_2636 aspartyl/glutamyl-tRNA amidotransferase subunit A; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: amidase; glutamyl-tRNA(Gln) amidotransferase subunit alpha complement(580393..581844) Nitrosococcus halophilus Nc4 8915538 YP_003526138.1 CDS Nhal_0567 NC_013960.1 581873 582160 R TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: noc:Noc_2635 glutamyl-tRNA(Gln) amidotransferase C subunit; glutamyl-tRNA(Gln) amidotransferase subunit C complement(581873..582160) Nitrosococcus halophilus Nc4 8915539 YP_003526139.1 CDS Nhal_0568 NC_013960.1 582274 583323 D TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: tgr:Tgr7_0514 rod shape-determining protein MreB; MreB/Mrl family cell shape determining protein 582274..583323 Nitrosococcus halophilus Nc4 8915540 YP_003526140.1 CDS Nhal_0569 NC_013960.1 583401 584327 D TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: pfl:PFL_0897 rod shape-determining protein MreC; rod shape-determining protein MreC 583401..584327 Nitrosococcus halophilus Nc4 8915541 YP_003526141.1 CDS Nhal_0570 NC_013960.1 584314 584808 D TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD; KEGG: tgr:Tgr7_0512 rod shape-determining protein MreD; rod shape-determining protein MreD 584314..584808 Nitrosococcus halophilus Nc4 8915542 YP_003526142.1 CDS Nhal_0571 NC_013960.1 584821 586662 D KEGG: mca:MCA0103 penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 584821..586662 Nitrosococcus halophilus Nc4 8915543 YP_003526143.1 CDS Nhal_0572 NC_013960.1 586671 587810 D TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: tgr:Tgr7_2710 rod shape-determining protein RodA; rod shape-determining protein RodA 586671..587810 Nitrosococcus halophilus Nc4 8915544 YP_003526144.1 CDS Nhal_0573 NC_013960.1 587831 588826 D TIGRFAM: lytic murein transglycosylase B; KEGG: noc:Noc_2634 lytic murein transglycosylase B; lytic murein transglycosylase B 587831..588826 Nitrosococcus halophilus Nc4 8915545 YP_003526145.1 CDS Nhal_0574 NC_013960.1 588823 589602 D TIGRFAM: lipoprotein A; PFAM: Rare lipoprotein A; sporulation domain protein; KEGG: noc:Noc_2633 lipoprotein A; lipoprotein A 588823..589602 Nitrosococcus halophilus Nc4 8915546 YP_003526146.1 CDS Nhal_0575 NC_013960.1 589690 590838 D PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: noc:Noc_2632 serine-type D-Ala-D-Ala carboxypeptidase; beta-lactamase 589690..590838 Nitrosococcus halophilus Nc4 8915547 YP_003526147.1 CDS Nhal_0576 NC_013960.1 590846 591709 D PFAM: aminotransferase class IV; KEGG: noc:Noc_2631 D-alanine transaminase; class IV aminotransferase 590846..591709 Nitrosococcus halophilus Nc4 8915548 YP_003526148.1 CDS Nhal_0577 NC_013960.1 591738 592370 D KEGG: noc:Noc_2630 lipoate-protein ligase B; TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; lipoate-protein ligase B 591738..592370 Nitrosococcus halophilus Nc4 8915549 YP_003526149.1 CDS Nhal_0578 NC_013960.1 592450 592674 D hypothetical protein 592450..592674 Nitrosococcus halophilus Nc4 8915550 YP_003526150.1 CDS Nhal_0579 NC_013960.1 592671 593651 D KEGG: noc:Noc_2629 lipoyl synthase; TIGRFAM: lipoic acid synthetase; PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; lipoic acid synthetase 592671..593651 Nitrosococcus halophilus Nc4 8915551 YP_003526151.1 CDS Nhal_0580 NC_013960.1 593836 594996 D KEGG: noc:Noc_2628 methylcitrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: citrate synthase; 2-methylcitrate synthase/citrate synthase II 593836..594996 Nitrosococcus halophilus Nc4 8915552 YP_003526152.1 CDS Nhal_0581 NC_013960.1 595050 596060 R KEGG: noc:Noc_2627 hypothetical protein; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: radical SAM protein; lysine 2,3-aminomutase YodO family protein complement(595050..596060) Nitrosococcus halophilus Nc4 8915553 YP_003526153.1 CDS Nhal_0582 NC_013960.1 596120 596689 D TIGRFAM: translation elongation factor P; PFAM: Elongation factor P ; Elongation factor P/YeiP protein; Elongation factor KOW domain protein; KEGG: noc:Noc_2626 elongation factor P; translation elongation factor P 596120..596689 Nitrosococcus halophilus Nc4 8915554 YP_003526154.1 CDS Nhal_0583 NC_013960.1 596736 597731 D TIGRFAM: lysyl-tRNA synthetase-related protein GenX; PFAM: tRNA synthetase class II (D K and N); KEGG: noc:Noc_2625 lysyl-tRNA synthetase-related protein; lysyl-tRNA synthetase-like protein GenX 596736..597731 Nitrosococcus halophilus Nc4 8915555 YP_003526155.1 CDS Nhal_0584 NC_013960.1 597838 599166 R TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit; KEGG: noc:Noc_0709 TRAP dicarboxylate transporter DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(597838..599166) Nitrosococcus halophilus Nc4 8915556 YP_003526156.1 CDS Nhal_0585 NC_013960.1 599166 599705 R PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: noc:Noc_0710 tripartite ATP-independent periplasmic transporter DctQ; tripartite ATP-independent periplasmic transporter DctQ component complement(599166..599705) Nitrosococcus halophilus Nc4 8915557 YP_003526157.1 CDS Nhal_0586 NC_013960.1 599712 600176 R TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: noc:Noc_0711 D-tyrosyl-tRNA deacylase; D-tyrosyl-tRNA(Tyr) deacylase complement(599712..600176) Nitrosococcus halophilus Nc4 8915558 YP_003526158.1 CDS Nhal_0587 NC_013960.1 600186 601130 R KEGG: noc:Noc_0712 peptidase S33, proline iminopeptidase 1; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; proline iminopeptidase complement(600186..601130) Nitrosococcus halophilus Nc4 8915559 YP_003526159.1 CDS Nhal_0588 NC_013960.1 601192 602361 D KEGG: noc:Noc_0713 succinyl-CoA synthetase, beta subunit; TIGRFAM: succinyl-CoA synthetase subunit beta; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase; succinyl-CoA synthetase subunit beta 601192..602361 Nitrosococcus halophilus Nc4 8915560 YP_003526160.1 CDS Nhal_0589 NC_013960.1 602358 603239 D TIGRFAM: succinyl-CoA synthetase, subunit alpha; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding protein; KEGG: noc:Noc_0714 succinyl-CoA ligase, subunit alpha; succinyl-CoA synthetase subunit alpha 602358..603239 Nitrosococcus halophilus Nc4 8915561 YP_003526161.1 CDS Nhal_0590 NC_013960.1 603369 603707 D PFAM: nitrogen regulatory protein P-II; KEGG: noc:Noc_0715 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 603369..603707 Nitrosococcus halophilus Nc4 8915562 YP_003526162.1 CDS Nhal_0591 NC_013960.1 603809 604591 R TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: noc:Noc_0716 transmembrane protein; outer membrane assembly lipoprotein YfiO complement(603809..604591) Nitrosococcus halophilus Nc4 8915563 YP_003526163.1 CDS Nhal_0592 NC_013960.1 604686 605654 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: noc:Noc_0717 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 604686..605654 Nitrosococcus halophilus Nc4 8915564 YP_003526164.1 CDS Nhal_0593 NC_013960.1 605728 606039 R KEGG: noc:Noc_0718 lipoprotein; lipoprotein complement(605728..606039) Nitrosococcus halophilus Nc4 8915565 YP_003526165.1 CDS Nhal_0594 NC_013960.1 606619 607416 D PFAM: inositol monophosphatase; KEGG: noc:Noc_0719 inositol-1(or 4)-monophosphatase; inositol monophosphatase 606619..607416 Nitrosococcus halophilus Nc4 8915566 YP_003526166.1 CDS Nhal_0595 NC_013960.1 607738 609567 D TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: noc:Noc_0720 GTP-binding protein TypA; GTP-binding protein TypA 607738..609567 Nitrosococcus halophilus Nc4 8915567 YP_003526167.1 CDS Nhal_0596 NC_013960.1 609572 609799 D KEGG: noc:Noc_0721 hypothetical protein; hypothetical protein 609572..609799 Nitrosococcus halophilus Nc4 8915568 YP_003526168.1 CDS Nhal_0597 NC_013960.1 609744 611411 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: noc:Noc_0722 signal transduction histidine kinase; ATP-binding region ATPase domain-containing protein 609744..611411 Nitrosococcus halophilus Nc4 8915569 YP_003526169.1 CDS Nhal_0598 NC_013960.1 611408 612742 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; ATPase AAA; KEGG: noc:Noc_0723 two component, sigma-54 specific, fis family transcriptional regulator; Fis family transcriptional regulator 611408..612742 Nitrosococcus halophilus Nc4 8915570 YP_003526170.1 CDS Nhal_0599 NC_013960.1 612887 613300 D PFAM: transposase IS3/IS911 family protein; KEGG: rms:RMA_0745 transposase; transposase IS3/IS911 family protein 612887..613300 Nitrosococcus halophilus Nc4 8915571 YP_003526171.1 CDS Nhal_0600 NC_013960.1 613365 613523 D KEGG: tgr:Tgr7_0628 addiction module toxin, RelE/StbE family; hypothetical protein 613365..613523 Nitrosococcus halophilus Nc4 8915572 YP_003526172.1 CDS Nhal_0601 NC_013960.1 613570 614133 D PFAM: protein of unknown function DUF820; KEGG: noc:Noc_0762 hypothetical protein; hypothetical protein 613570..614133 Nitrosococcus halophilus Nc4 8915573 YP_003526173.1 CDS Nhal_0602 NC_013960.1 614319 614648 D KEGG: bvi:Bcep1808_4515 hypothetical protein; hypothetical protein 614319..614648 Nitrosococcus halophilus Nc4 8915574 YP_003526174.1 CDS Nhal_0603 NC_013960.1 614721 615164 D KEGG: bvi:Bcep1808_4514 hypothetical protein; hypothetical protein 614721..615164 Nitrosococcus halophilus Nc4 8915575 YP_003526175.1 CDS Nhal_0604 NC_013960.1 615201 615467 D TIGRFAM: AbrB family transcriptional regulator; PFAM: SpoVT/AbrB domain protein; KEGG: noc:Noc_2545 AbrB family transcriptional regulator; AbrB family transcriptional regulator 615201..615467 Nitrosococcus halophilus Nc4 8915576 YP_003526176.1 CDS Nhal_0605 NC_013960.1 615536 615703 D KEGG: noc:Noc_2544 PilT protein-like; PilT protein-like protein 615536..615703 Nitrosococcus halophilus Nc4 8915577 YP_003526177.1 CDS Nhal_0606 NC_013960.1 615715 616098 R PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: noc:Noc_2542 XRE family transcriptional regulator; hypothetical protein complement(615715..616098) Nitrosococcus halophilus Nc4 8915578 YP_003526178.1 CDS Nhal_0607 NC_013960.1 616095 616352 R TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: bgl:bglu_1g12000 hypothetical protein; RelE/StbE family addiction module toxin complement(616095..616352) Nitrosococcus halophilus Nc4 8915579 YP_003526179.1 CDS Nhal_0608 NC_013960.1 616719 617210 D PFAM: fimbrial protein pilin; KEGG: tgr:Tgr7_0797 pilin; fimbrial protein pilin 616719..617210 Nitrosococcus halophilus Nc4 8915580 YP_003526180.1 CDS Nhal_0609 NC_013960.1 617321 619285 D KEGG: tgr:Tgr7_0796 hypothetical protein; hypothetical protein 617321..619285 Nitrosococcus halophilus Nc4 8915581 YP_003526181.1 CDS Nhal_0610 NC_013960.1 619444 620310 D PFAM: glycosyl transferase family 2; KEGG: tgr:Tgr7_0794 glycosyl transferase family 2; family 2 glycosyl transferase 619444..620310 Nitrosococcus halophilus Nc4 8915582 YP_003526182.1 CDS Nhal_0611 NC_013960.1 620322 621587 D PFAM: glycosyl transferase group 1; KEGG: tgr:Tgr7_0793 glycosyltransferase; group 1 glycosyl transferase 620322..621587 Nitrosococcus halophilus Nc4 8915583 YP_003526183.1 CDS Nhal_0612 NC_013960.1 622427 623551 R PFAM: glycosyl transferase group 1; KEGG: smt:Smal_3173 glycosyl transferase group 1; group 1 glycosyl transferase complement(622427..623551) Nitrosococcus halophilus Nc4 8915584 YP_003526184.1 CDS Nhal_0614 NC_013960.1 623736 624836 R KEGG: bpy:Bphyt_0851 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like; UDP-galactopyranose mutase complement(623736..624836) Nitrosococcus halophilus Nc4 8915586 YP_003526185.1 CDS Nhal_0615 NC_013960.1 624861 625901 R PFAM: glycosyl transferase family 2; KEGG: gur:Gura_1682 glycosyl transferase; family 2 glycosyl transferase complement(624861..625901) Nitrosococcus halophilus Nc4 8915587 YP_003526186.1 CDS Nhal_0616 NC_013960.1 625898 626965 R PFAM: glycosyl transferase family 2; KEGG: mca:MCA0622 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase complement(625898..626965) Nitrosococcus halophilus Nc4 8915588 YP_003526187.1 CDS Nhal_0617 NC_013960.1 626965 627891 R KEGG: afr:AFE_1817 sulfotransferase domain protein; hypothetical protein complement(626965..627891) Nitrosococcus halophilus Nc4 8915589 YP_003526188.1 CDS Nhal_0618 NC_013960.1 627982 628911 R KEGG: afr:AFE_1817 sulfotransferase domain protein; hypothetical protein complement(627982..628911) Nitrosococcus halophilus Nc4 8915590 YP_003526189.1 CDS Nhal_0619 NC_013960.1 628902 630206 R PFAM: polysaccharide biosynthesis protein; multi antimicrobial extrusion protein MatE; KEGG: abo:ABO_0915 polysaccharide export protein, translocase; polysaccharide biosynthesis protein complement(628902..630206) Nitrosococcus halophilus Nc4 8915591 YP_003526190.1 CDS Nhal_0621 NC_013960.1 631007 631276 R TIGRFAM: AbrB family transcriptional regulator; PFAM: SpoVT/AbrB domain protein; KEGG: noc:Noc_2538 AbrB family transcriptional regulator; AbrB family transcriptional regulator complement(631007..631276) Nitrosococcus halophilus Nc4 8915593 YP_003526191.1 CDS Nhal_0622 NC_013960.1 631585 631812 D hypothetical protein 631585..631812 Nitrosococcus halophilus Nc4 8915594 YP_003526192.1 CDS Nhal_0623 NC_013960.1 631813 632022 D hypothetical protein 631813..632022 Nitrosococcus halophilus Nc4 8915595 YP_003526193.1 CDS Nhal_0624 NC_013960.1 632473 632871 R PFAM: protein of unknown function UPF0150; CopG domain protein DNA-binding domain protein; KEGG: noc:Noc_2537 hypothetical protein; hypothetical protein complement(632473..632871) Nitrosococcus halophilus Nc4 8915596 YP_003526194.1 CDS Nhal_0625 NC_013960.1 632875 633063 R PFAM: YcfA family protein; KEGG: sme:SMc04441 hypothetical protein; YcfA family protein complement(632875..633063) Nitrosococcus halophilus Nc4 8915597 YP_003526195.1 CDS Nhal_0626 NC_013960.1 633191 633616 R TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: nucleotidyltransferase substrate binding protein HI0074; KEGG: noc:Noc_2536 nucleotidyltransferase substrate-binding protein; nucleotidyltransferase substrate binding protein complement(633191..633616) Nitrosococcus halophilus Nc4 8915598 YP_003526196.1 CDS Nhal_0627 NC_013960.1 633604 633918 R PFAM: DNA polymerase beta domain protein region; KEGG: noc:Noc_2535 DNA polymerase, beta-like region; DNA polymerase beta domain-containing protein complement(633604..633918) Nitrosococcus halophilus Nc4 8915599 YP_003526197.1 CDS Nhal_0628 NC_013960.1 634089 634703 D PFAM: MerR family transcriptional regulator; Resolvase domain; KEGG: xfm:Xfasm12_1564 hypothetical protein; MerR family transcriptional regulator 634089..634703 Nitrosococcus halophilus Nc4 8915600 YP_003526198.1 CDS Nhal_0629 NC_013960.1 634681 635835 D TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0401 transposase; transposase, IS605 OrfB family 634681..635835 Nitrosococcus halophilus Nc4 8915601 YP_003526199.1 CDS Nhal_0630 NC_013960.1 635887 635979 D hypothetical protein 635887..635979 Nitrosococcus halophilus Nc4 8915602 YP_003526200.1 CDS Nhal_0631 NC_013960.1 636013 636324 D PFAM: DNA polymerase beta domain protein region; KEGG: tgr:Tgr7_1984 DNA polymerase subunit beta; DNA polymerase beta domain-containing protein 636013..636324 Nitrosococcus halophilus Nc4 8915603 YP_003526201.1 CDS Nhal_0633 NC_013960.1 636557 637780 R PFAM: transposase mutator type; KEGG: son:SO_0708 transposase mutator family protein; transposase mutator type complement(636557..637780) Nitrosococcus halophilus Nc4 8915605 YP_003526202.1 CDS Nhal_0635 NC_013960.1 638930 639178 D TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: avi:Avi_2643 hypothetical protein; addiction module antidote protein 638930..639178 Nitrosococcus halophilus Nc4 8915607 YP_003526203.1 CDS Nhal_0636 NC_013960.1 639178 639474 D PFAM: plasmid stabilization system; KEGG: nmu:Nmul_B2801 plasmid stabilization system protein; plasmid stabilization system 639178..639474 Nitrosococcus halophilus Nc4 8915608 YP_003526204.1 CDS Nhal_0637 NC_013960.1 639495 639716 R hypothetical protein complement(639495..639716) Nitrosococcus halophilus Nc4 8915609 YP_003526205.1 CDS Nhal_0638 NC_013960.1 639992 640420 D KEGG: noc:Noc_2534 hypothetical protein; hypothetical protein 639992..640420 Nitrosococcus halophilus Nc4 8915610 YP_003526206.1 CDS Nhal_0639 NC_013960.1 640861 641157 D PFAM: propeptide PepSY amd peptidase M4; KEGG: mpt:Mpe_A1138 hypothetical protein; propeptide PepSY amd peptidase M4 640861..641157 Nitrosococcus halophilus Nc4 8915611 YP_003526207.1 CDS Nhal_0640 NC_013960.1 641215 642564 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: noc:Noc_2533 multi anti extrusion protein MatE; MATE efflux family protein complement(641215..642564) Nitrosococcus halophilus Nc4 8915612 YP_003526208.1 CDS Nhal_0641 NC_013960.1 642703 643608 R PFAM: OmpA/MotB domain protein; Thrombospondin type 3 repeat; KEGG: noc:Noc_2532 OmpA/MotB; OmpA/MotB domain-containing protein complement(642703..643608) Nitrosococcus halophilus Nc4 8915613 YP_003526209.1 CDS Nhal_0642 NC_013960.1 643966 644349 R KEGG: noc:Noc_2531 hypothetical protein; hypothetical protein complement(643966..644349) Nitrosococcus halophilus Nc4 8915614 YP_003526210.1 CDS Nhal_0643 NC_013960.1 644532 646403 R KEGG: noc:Noc_2530 hypothetical protein; hypothetical protein complement(644532..646403) Nitrosococcus halophilus Nc4 8915615 YP_003526211.1 CDS Nhal_0644 NC_013960.1 646587 646961 D KEGG: noc:Noc_2529 hypothetical protein; hypothetical protein 646587..646961 Nitrosococcus halophilus Nc4 8915616 YP_003526212.1 CDS Nhal_0645 NC_013960.1 647426 648067 R PFAM: MT-A70 family protein; KEGG: mpo:Mpop_2710 MT-A70 family protein; MT-A70 family protein complement(647426..648067) Nitrosococcus halophilus Nc4 8915617 YP_003526213.1 CDS Nhal_0646 NC_013960.1 648151 649398 R PFAM: ribonucleotide reductase; KEGG: noc:Noc_2528 ribonucleotide-diphosphate reductase subunit beta; ribonucleoside-diphosphate reductase complement(648151..649398) Nitrosococcus halophilus Nc4 8915618 YP_003526214.1 CDS Nhal_0647 NC_013960.1 649482 654569 R KEGG: noc:Noc_2527 ribonucleoside-diphosphate reductase; PFAM: ribonucleotide reductase large subunit; ATP-cone domain protein; ribonucleotide reductase large subunit domain protein; SMART: Hedgehog/intein hint domain protein; ribonucleoside-diphosphate reductase complement(649482..654569) Nitrosococcus halophilus Nc4 8915619 YP_003526215.1 CDS Nhal_0648 NC_013960.1 654687 654863 D hypothetical protein 654687..654863 Nitrosococcus halophilus Nc4 8915620 YP_003526216.1 CDS Nhal_0649 NC_013960.1 654949 655416 R PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: noc:Noc_2526 alkyl hydroperoxide reductase/thiol specific antioxidant; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen complement(654949..655416) Nitrosococcus halophilus Nc4 8915621 YP_003526217.1 CDS Nhal_0650 NC_013960.1 655436 655990 R KEGG: noc:Noc_2525 glycine cleavage system transcriptional repressor; glycine cleavage system transcriptional repressor complement(655436..655990) Nitrosococcus halophilus Nc4 8915622 YP_003526218.1 CDS Nhal_0651 NC_013960.1 656140 657018 D TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: noc:Noc_2524 dihydrodipicolinate synthase subfamily protein; dihydrodipicolinate synthase 656140..657018 Nitrosococcus halophilus Nc4 8915623 YP_003526219.1 CDS Nhal_0652 NC_013960.1 657037 658053 D KEGG: noc:Noc_2523 NlpB/DapX lipoprotein; NlpB/DapX lipoprotein 657037..658053 Nitrosococcus halophilus Nc4 8915624 YP_003526220.1 CDS Nhal_0653 NC_013960.1 658066 658782 D KEGG: noc:Noc_2522 phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazole-succinocarboxamide synthase 658066..658782 Nitrosococcus halophilus Nc4 8915625 YP_003526221.1 CDS Nhal_0654 NC_013960.1 658829 659860 R KEGG: noc:Noc_2521 dihydroorotase; TIGRFAM: dihydroorotase, homodimeric type; PFAM: amidohydrolase; dihydroorotase, homodimeric type complement(658829..659860) Nitrosococcus halophilus Nc4 8915626 YP_003526222.1 CDS Nhal_0655 NC_013960.1 660230 661978 D TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; KEGG: noc:Noc_2520 acetolactate synthase large subunit biosynthetic type; acetolactate synthase, large subunit, biosynthetic type 660230..661978 Nitrosococcus halophilus Nc4 8915627 YP_003526223.1 CDS Nhal_0656 NC_013960.1 661980 662474 D KEGG: noc:Noc_2519 acetolactate synthase small subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; acetolactate synthase, small subunit 661980..662474 Nitrosococcus halophilus Nc4 8915628 YP_003526224.1 CDS Nhal_0657 NC_013960.1 662774 663790 D KEGG: noc:Noc_2518 ketol-acid reductoisomerase; TIGRFAM: ketol-acid reductoisomerase; PFAM: acetohydroxy acid isomeroreductase catalytic domain protein; CoA-binding protein; acetohydroxy acid isomeroreductase; ketol-acid reductoisomerase 662774..663790 Nitrosococcus halophilus Nc4 8915629 YP_003526225.1 CDS Nhal_0658 NC_013960.1 663796 664599 D TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: noc:Noc_2517 CDP-diacylglycerol--serine O-phosphatidyltransferase; CDP-diacylglycerol/serine O-phosphatidyltransferase 663796..664599 Nitrosococcus halophilus Nc4 8915630 YP_003526226.1 CDS Nhal_0659 NC_013960.1 664858 666393 D TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: noc:Noc_2516 2-isopropylmalate synthase; 2-isopropylmalate synthase 664858..666393 Nitrosococcus halophilus Nc4 8915631 YP_003526227.1 CDS Nhal_0660 NC_013960.1 666401 667096 D TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: uracil-DNA glycosylase superfamily; KEGG: noc:Noc_2515 phage SPO1 DNA polymerase-related protein; phage SPO1 DNA polymerase-like protein 666401..667096 Nitrosococcus halophilus Nc4 8915632 YP_003526228.1 CDS Nhal_0661 NC_013960.1 667141 667626 D TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: noc:Noc_2514 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase 667141..667626 Nitrosococcus halophilus Nc4 8915633 YP_003526229.1 CDS Nhal_0662 NC_013960.1 667664 668938 D KEGG: noc:Noc_2513 membrane protein; membrane protein 667664..668938 Nitrosococcus halophilus Nc4 8915634 YP_003526230.1 CDS Nhal_0663 NC_013960.1 668924 669448 R PFAM: NUDIX hydrolase; KEGG: noc:Noc_2512 NUDIX hydrolase; NUDIX hydrolase complement(668924..669448) Nitrosococcus halophilus Nc4 8915635 YP_003526231.1 CDS Nhal_0664 NC_013960.1 669556 670377 D PFAM: protein of unknown function DUF81; KEGG: noc:Noc_2511 hypothetical protein; hypothetical protein 669556..670377 Nitrosococcus halophilus Nc4 8915636 YP_003526232.1 CDS Nhal_0665 NC_013960.1 670324 671412 R PFAM: glycosyl transferase group 1; KEGG: mca:MCA2241 glycosyl transferase; group 1 glycosyl transferase complement(670324..671412) Nitrosococcus halophilus Nc4 8915637 YP_003526233.1 CDS Nhal_0666 NC_013960.1 671766 672041 D hypothetical protein 671766..672041 Nitrosococcus halophilus Nc4 8915638 YP_003526234.1 CDS Nhal_0667 NC_013960.1 672069 674000 D PFAM: PrkA AAA domain protein; PrkA serine kinase; SMART: PrkA AAA domain protein; KEGG: noc:Noc_2509 PrkA serine kinase; PrkA AAA domain-containing protein 672069..674000 Nitrosococcus halophilus Nc4 8915639 YP_003526235.1 CDS Nhal_0668 NC_013960.1 674064 675245 D PFAM: protein of unknown function DUF444; KEGG: noc:Noc_2508 hypothetical protein; hypothetical protein 674064..675245 Nitrosococcus halophilus Nc4 8915640 YP_003526236.1 CDS Nhal_0669 NC_013960.1 675278 676720 D PFAM: SpoVR family protein; KEGG: noc:Noc_2507 stage V sporulation-like protein, SpoVR; SpoVR family protein 675278..676720 Nitrosococcus halophilus Nc4 8915641 YP_003526237.1 CDS Nhal_0670 NC_013960.1 676838 676951 D KEGG: mca:MCA2244 hypothetical protein; hypothetical protein 676838..676951 Nitrosococcus halophilus Nc4 8915642 YP_003526238.1 CDS Nhal_0671 NC_013960.1 677519 679204 D PFAM: multicopper oxidase type 3; multicopper oxidase type 2; KEGG: noc:Noc_2506 multicopper oxidase type 3; multicopper oxidase type 3 677519..679204 Nitrosococcus halophilus Nc4 8915643 YP_003526239.1 CDS Nhal_0672 NC_013960.1 679211 680242 D KEGG: noc:Noc_2505 hypothetical protein; hypothetical protein 679211..680242 Nitrosococcus halophilus Nc4 8915644 YP_003526240.1 CDS Nhal_0673 NC_013960.1 680375 680827 R PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: mca:MCA0583 CBS domain-containing protein; CBS domain-containing protein complement(680375..680827) Nitrosococcus halophilus Nc4 8915645 YP_003526241.1 CDS Nhal_0674 NC_013960.1 680882 681718 R KEGG: noc:Noc_2504 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; phosphoserine phosphatase SerB complement(680882..681718) Nitrosococcus halophilus Nc4 8915646 YP_003526242.1 CDS Nhal_0675 NC_013960.1 682132 682908 D TIGRFAM: methane monooxygenase/ammonia monooxygenase, subunit C; PFAM: Ammonia monooxygenase/methane monooxygenase subunit C; KEGG: noc:Noc_2503 ammonia monooxygenase/methane monooxygenase, subunit C; methane monooxygenase/ammonia monooxygenase subunit C 682132..682908 Nitrosococcus halophilus Nc4 8915647 YP_003526243.1 CDS Nhal_0676 NC_013960.1 683261 684004 D TIGRFAM: methane monooxygenase/ammonia monooxygenase, subunit A; PFAM: Ammonia monooxygenase/methane monooxygenase subunit A; KEGG: noc:Noc_2502 ammonia monooxygenase; methane monooxygenase/ammonia monooxygenase subunit A 683261..684004 Nitrosococcus halophilus Nc4 8915648 YP_003526244.1 CDS Nhal_0677 NC_013960.1 684053 685300 D TIGRFAM: methane monooxygenase/ammonia monooxygenase, subunit B; PFAM: Ammonia monooxygenase/methane monooxygenase subunit B; KEGG: noc:Noc_2501 monooxygenase subunit B protein; methane monooxygenase/ammonia monooxygenase subunit B 684053..685300 Nitrosococcus halophilus Nc4 8915649 YP_003526245.1 CDS Nhal_0678 NC_013960.1 685494 686054 D KEGG: noc:Noc_2500 hypothetical protein; hypothetical protein 685494..686054 Nitrosococcus halophilus Nc4 8915650 YP_003526246.1 CDS Nhal_0679 NC_013960.1 686353 686862 D KEGG: noc:Noc_2499 hypothetical protein; hypothetical protein 686353..686862 Nitrosococcus halophilus Nc4 8915651 YP_003526247.1 CDS Nhal_0680 NC_013960.1 686903 687382 D KEGG: noc:Noc_2498 hypothetical protein; hypothetical protein 686903..687382 Nitrosococcus halophilus Nc4 8915652 YP_003526248.1 CDS Nhal_0681 NC_013960.1 687450 688268 R PFAM: indole-3-glycerol phosphate synthase; KEGG: noc:Noc_2497 indole-3-glycerol-phosphate synthase; indole-3-glycerol-phosphate synthase complement(687450..688268) Nitrosococcus halophilus Nc4 8915653 YP_003526249.1 CDS Nhal_0682 NC_013960.1 688305 689327 R KEGG: noc:Noc_2496 anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; glycosyl transferase, family 3-like; anthranilate phosphoribosyltransferase complement(688305..689327) Nitrosococcus halophilus Nc4 8915654 YP_003526250.1 CDS Nhal_0683 NC_013960.1 689386 689967 R TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: noc:Noc_2495 glutamine amidotransferase; glutamine amidotransferase complement(689386..689967) Nitrosococcus halophilus Nc4 8915655 YP_003526251.1 CDS Nhal_0684 NC_013960.1 689977 691455 R KEGG: noc:Noc_2494 anthranilate synthase component I; TIGRFAM: anthranilate synthase component I; PFAM: chorismate binding-like; anthranilate synthase component I domain protein; anthranilate synthase component I complement(689977..691455) Nitrosococcus halophilus Nc4 8915656 YP_003526252.1 CDS Nhal_0685 NC_013960.1 691570 692247 R TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase; KEGG: noc:Noc_2493 phosphoglycolate phosphatase; phosphoglycolate phosphatase complement(691570..692247) Nitrosococcus halophilus Nc4 8915657 YP_003526253.1 CDS Nhal_0686 NC_013960.1 692327 692998 R KEGG: noc:Noc_2492 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Orotidine 5'-phosphate decarboxylase; ribulose-phosphate 3-epimerase complement(692327..692998) Nitrosococcus halophilus Nc4 8915658 YP_003526254.1 CDS Nhal_0687 NC_013960.1 693197 693688 D TIGRFAM: FeS assembly SUF system regulator; Rrf2 family transcriptional regulator; PFAM: protein of unknown function UPF0074; KEGG: noc:Noc_2491 hypothetical protein; FeS assembly SUF system regulator 693197..693688 Nitrosococcus halophilus Nc4 8915659 YP_003526255.1 CDS Nhal_0688 NC_013960.1 693685 695133 D TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: noc:Noc_2490 cysteine desulfurase activator complex subunit SufB; FeS assembly protein SufB 693685..695133 Nitrosococcus halophilus Nc4 8915660 YP_003526256.1 CDS Nhal_0689 NC_013960.1 695185 695958 D KEGG: noc:Noc_2489 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter; SMART: ATPase AAA; FeS assembly ATPase SufC 695185..695958 Nitrosococcus halophilus Nc4 8915661 YP_003526257.1 CDS Nhal_0690 NC_013960.1 695955 697298 D TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: noc:Noc_2488 FeS assembly protein SufD; FeS assembly protein SufD 695955..697298 Nitrosococcus halophilus Nc4 8915662 YP_003526258.1 CDS Nhal_0691 NC_013960.1 697295 698557 D TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: noc:Noc_2487 cysteine desulphurases, SufS; SufS subfamily cysteine desulfurase 697295..698557 Nitrosococcus halophilus Nc4 8915663 YP_003526259.1 CDS Nhal_0692 NC_013960.1 698554 699006 D TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: noc:Noc_2486 SUF system FeS assembly protein; SUF system FeS assembly protein, NifU family 698554..699006 Nitrosococcus halophilus Nc4 8915664 YP_003526260.1 CDS Nhal_0693 NC_013960.1 699013 699564 D TIGRFAM: FeS assembly SUF system protein SufT; PFAM: protein of unknown function DUF59; KEGG: noc:Noc_2485 hypothetical protein; FeS assembly SUF system protein SufT 699013..699564 Nitrosococcus halophilus Nc4 8915665 YP_003526261.1 CDS Nhal_0694 NC_013960.1 699571 700089 R KEGG: noc:Noc_2484 transcriptional activator RfaH; TIGRFAM: transcriptional activator RfaH; PFAM: NGN domain protein; SMART: NGN domain protein; transcriptional activator RfaH complement(699571..700089) Nitrosococcus halophilus Nc4 8915666 YP_003526262.1 CDS Nhal_0695 NC_013960.1 700150 701520 R KEGG: noc:Noc_2483 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase complement(700150..701520) Nitrosococcus halophilus Nc4 8915667 YP_003526263.1 CDS Nhal_0696 NC_013960.1 701683 702312 D KEGG: noc:Noc_2482 adenylylsulfate kinase; TIGRFAM: adenylylsulfate kinase; PFAM: adenylylsulfate kinase; adenylylsulfate kinase 701683..702312 Nitrosococcus halophilus Nc4 8915668 YP_003526264.1 CDS Nhal_0697 NC_013960.1 702309 703721 D PFAM: RNA-metabolising metallo-beta-lactamase; beta-lactamase; KEGG: pca:Pcar_1488 exonuclease; RNA-metabolising metallo-beta-lactamase 702309..703721 Nitrosococcus halophilus Nc4 8915669 YP_003526265.1 CDS Nhal_0698 NC_013960.1 703828 705261 D PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: noc:Noc_2481 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 703828..705261 Nitrosococcus halophilus Nc4 8915670 YP_003526266.1 CDS Nhal_0699 NC_013960.1 705258 706364 D PFAM: glycosyl transferase group 1; KEGG: noc:Noc_2480 glycosyl transferase, group 1; group 1 glycosyl transferase 705258..706364 Nitrosococcus halophilus Nc4 8915671 YP_003526267.1 CDS Nhal_0700 NC_013960.1 706399 707538 D PFAM: glycosyl transferase group 1; KEGG: noc:Noc_2479 glycosyl transferase, group 1; group 1 glycosyl transferase 706399..707538 Nitrosococcus halophilus Nc4 8915672 YP_003526268.1 CDS Nhal_0701 NC_013960.1 707538 709532 D KEGG: noc:Noc_2478 asparagine synthase, glutamine-hydrolyzing; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II; asparagine synthase 707538..709532 Nitrosococcus halophilus Nc4 8915673 YP_003526269.1 CDS Nhal_0702 NC_013960.1 709561 710697 D PFAM: glycosyl transferase group 1; KEGG: noc:Noc_2477 glycosyl transferase, group 1; group 1 glycosyl transferase 709561..710697 Nitrosococcus halophilus Nc4 8915674 YP_003526270.1 CDS Nhal_0703 NC_013960.1 710730 711725 D PFAM: glycosyl transferase family 4; KEGG: noc:Noc_2476 glycosyl transferase; glycosyl transferase family protein 710730..711725 Nitrosococcus halophilus Nc4 8915675 YP_003526271.1 CDS Nhal_0704 NC_013960.1 711867 712196 D PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: noc:Noc_2475 histone-like DNA-binding protein; histone family protein DNA-binding protein 711867..712196 Nitrosococcus halophilus Nc4 8915676 YP_003526272.1 CDS Nhal_0705 NC_013960.1 712240 713277 R TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: noc:Noc_2474 glycine cleavage T protein (aminomethyl transferase); folate-binding protein YgfZ complement(712240..713277) Nitrosococcus halophilus Nc4 8915677 YP_003526273.1 CDS Nhal_0706 NC_013960.1 713467 713844 D TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: noc:Noc_2473 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, cytochrome b556 subunit 713467..713844 Nitrosococcus halophilus Nc4 8915678 YP_003526274.1 CDS Nhal_0707 NC_013960.1 713841 714170 D TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; KEGG: noc:Noc_2472 succinate dehydrogenase, hydrophobic membrane anchor protein; succinate dehydrogenase, hydrophobic membrane anchor protein 713841..714170 Nitrosococcus halophilus Nc4 8915679 YP_003526275.1 CDS Nhal_0708 NC_013960.1 714167 715930 D TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; succinate dehydrogenase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: noc:Noc_2471 succinate dehydrogenase or fumarate reductase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit 714167..715930 Nitrosococcus halophilus Nc4 8915680 YP_003526276.1 CDS Nhal_0709 NC_013960.1 715954 716649 D TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: noc:Noc_2470 succinate dehydrogenase/fumarate reductase iron-sulfur protein; succinate dehydrogenase and fumarate reductase iron-sulfur protein 715954..716649 Nitrosococcus halophilus Nc4 8915681 YP_003526277.1 CDS Nhal_0710 NC_013960.1 716662 716910 D PFAM: protein of unknown function DUF339; KEGG: noc:Noc_2469 hypothetical protein; hypothetical protein 716662..716910 Nitrosococcus halophilus Nc4 8915682 YP_003526278.1 CDS Nhal_0711 NC_013960.1 716873 717316 D KEGG: noc:Noc_2468 hypothetical protein; hypothetical protein 716873..717316 Nitrosococcus halophilus Nc4 8915683 YP_003526279.1 CDS Nhal_0712 NC_013960.1 717363 718997 R TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: noc:Noc_2467 L-aspartate oxidase; L-aspartate oxidase complement(717363..718997) Nitrosococcus halophilus Nc4 8915684 YP_003526280.1 CDS Nhal_0713 NC_013960.1 719183 719773 D TIGRFAM: RNA polymerase sigma factor RpoE; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: noc:Noc_2466 RNA polymerase sigma factor RpoE; RNA polymerase sigma factor RpoE 719183..719773 Nitrosococcus halophilus Nc4 8915685 YP_003526281.1 CDS Nhal_0714 NC_013960.1 719831 720400 D PFAM: anti sigma-E protein RseA family protein; KEGG: noc:Noc_2465 anti sigma-E protein RseA-like; anti sigma-E protein RseA family protein 719831..720400 Nitrosococcus halophilus Nc4 8915686 YP_003526282.1 CDS Nhal_0715 NC_013960.1 720384 721436 D PFAM: MucB/RseB family protein; KEGG: noc:Noc_2464 MucB/RseB; MucB/RseB family protein 720384..721436 Nitrosococcus halophilus Nc4 8915687 YP_003526283.1 CDS Nhal_0716 NC_013960.1 721643 722086 D PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: noc:Noc_2463 positive regulator of sigma(E), RseC/MucC; Positive regulator of sigma(E) RseC/MucC 721643..722086 Nitrosococcus halophilus Nc4 8915688 YP_003526284.1 CDS Nhal_0717 NC_013960.1 722235 723650 D KEGG: noc:Noc_2462 peptidase S1C, Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; protease Do 722235..723650 Nitrosococcus halophilus Nc4 8915689 YP_003526285.1 CDS Nhal_0718 NC_013960.1 723777 725573 D TIGRFAM: GTP-binding protein LepA; small GTP-binding protein; PFAM: GTP-binding protein LepA domain protein; elongation factor G domain protein; elongation factor Tu domain 2 protein; protein synthesis factor GTP-binding; KEGG: noc:Noc_2461 GTP-binding protein LepA; GTP-binding protein LepA 723777..725573 Nitrosococcus halophilus Nc4 8915690 YP_003526286.1 CDS Nhal_0719 NC_013960.1 725656 726477 D KEGG: noc:Noc_2460 peptidase S26A, signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I 725656..726477 Nitrosococcus halophilus Nc4 8915691 YP_003526287.1 CDS Nhal_0720 NC_013960.1 726496 726870 D KEGG: noc:Noc_2459 hypothetical protein; hypothetical protein 726496..726870 Nitrosococcus halophilus Nc4 8915692 YP_003526288.1 CDS Nhal_0721 NC_013960.1 726867 727562 D KEGG: noc:Noc_2458 ribonuclease III; TIGRFAM: ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; SMART: ribonuclease III; double-stranded RNA binding domain protein; ribonuclease III 726867..727562 Nitrosococcus halophilus Nc4 8915693 YP_003526289.1 CDS Nhal_0722 NC_013960.1 727555 728466 D TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; KEGG: noc:Noc_2457 GTP-binding protein Era; GTP-binding protein Era 727555..728466 Nitrosococcus halophilus Nc4 8915694 YP_003526290.1 CDS Nhal_0723 NC_013960.1 728488 729381 R PFAM: metal-dependent hydrolase HDOD; KEGG: noc:Noc_2456 hypothetical protein; metal-dependent hydrolase HDOD complement(728488..729381) Nitrosococcus halophilus Nc4 8915695 YP_003526291.1 CDS Nhal_0724 NC_013960.1 729603 730784 D PFAM: aminotransferase class I and II; KEGG: noc:Noc_2455 aminotransferase; class I and II aminotransferase 729603..730784 Nitrosococcus halophilus Nc4 8915696 YP_003526292.1 CDS Nhal_0725 NC_013960.1 730819 732129 D PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; KEGG: noc:Noc_2454 homoserine dehydrogenase; homoserine dehydrogenase 730819..732129 Nitrosococcus halophilus Nc4 8915697 YP_003526293.1 CDS Nhal_0726 NC_013960.1 732221 733303 D TIGRFAM: threonine synthase; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; KEGG: noc:Noc_2453 threonine synthase; threonine synthase 732221..733303 Nitrosococcus halophilus Nc4 8915698 YP_003526294.1 CDS Nhal_0727 NC_013960.1 733323 735026 R PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; KEGG: noc:Noc_2452 multisensor signal transduction histidine kinase; ATP-binding region ATPase domain-containing protein complement(733323..735026) Nitrosococcus halophilus Nc4 8915699 YP_003526295.1 CDS Nhal_0728 NC_013960.1 735026 735490 R PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: noc:Noc_2451 response regulator receiver; response regulator receiver complement(735026..735490) Nitrosococcus halophilus Nc4 8915700 YP_003526296.1 CDS Nhal_0729 NC_013960.1 735493 737406 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: noc:Noc_2450 PAS sensor signal transduction histidine kinase; ATP-binding region ATPase domain-containing protein complement(735493..737406) Nitrosococcus halophilus Nc4 8915701 YP_003526297.1 CDS Nhal_0730 NC_013960.1 737463 738338 R PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: noc:Noc_2448 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(737463..738338) Nitrosococcus halophilus Nc4 8915702 YP_003526298.1 CDS Nhal_0731 NC_013960.1 738389 739432 R PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: noc:Noc_2447 peptidyl-arginine deiminase; Agmatine deiminase complement(738389..739432) Nitrosococcus halophilus Nc4 8915703 YP_003526299.1 CDS Nhal_0732 NC_013960.1 739450 740925 R TIGRFAM: anion transporter; PFAM: sodium/sulfate symporter; citrate transporter; KEGG: noc:Noc_2446 sodium/sulfate symporter; anion transporter complement(739450..740925) Nitrosococcus halophilus Nc4 8915704 YP_003526300.1 CDS Nhal_0733 NC_013960.1 741039 741848 D PFAM: metallophosphoesterase; KEGG: mca:MCA2242 calcineurin-like phosphoesterase; metallophosphoesterase 741039..741848 Nitrosococcus halophilus Nc4 8915705 YP_003526301.1 CDS Nhal_0734 NC_013960.1 742737 744023 D KEGG: mpt:Mpe_A0812 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAS sensor protein 742737..744023 Nitrosococcus halophilus Nc4 8915706 YP_003526302.1 CDS Nhal_0735 NC_013960.1 744016 744657 D PFAM: response regulator receiver; LuxR family transcriptional regulator; Sigma-70 region 4 type 2; SMART: response regulator receiver; LuxR family transcriptional regulator; KEGG: noc:Noc_2445 two component LuxR family transcriptional regulator; response regulator receiver 744016..744657 Nitrosococcus halophilus Nc4 8915707 YP_003526303.1 CDS Nhal_0736 NC_013960.1 745068 745859 D TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; transposase IS891/IS1136/IS1341 family; KEGG: pin:Ping_3063 transposase, IS605 OrfB family protein; transposase, IS605 OrfB family 745068..745859 Nitrosococcus halophilus Nc4 8915708 YP_003526304.1 CDS Nhal_0737 NC_013960.1 745930 747087 R KEGG: noc:Noc_2444 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: radical SAM protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase complement(745930..747087) Nitrosococcus halophilus Nc4 8915709 YP_003526305.1 CDS Nhal_0738 NC_013960.1 747126 747728 R KEGG: noc:Noc_2443 Ham1-like protein; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase complement(747126..747728) Nitrosococcus halophilus Nc4 8915710 YP_003526306.1 CDS Nhal_0739 NC_013960.1 747732 748451 R KEGG: noc:Noc_2442 ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; ribonuclease PH complement(747732..748451) Nitrosococcus halophilus Nc4 8915711 YP_003526307.1 CDS Nhal_0740 NC_013960.1 748708 749079 D KEGG: noc:Noc_2441 hypothetical protein; hypothetical protein 748708..749079 Nitrosococcus halophilus Nc4 8915712 YP_003526308.1 CDS Nhal_0741 NC_013960.1 749212 749838 D TIGRFAM: methylthioribulose-1-phosphate dehydratase; PFAM: class II aldolase/adducin family protein; KEGG: tgr:Tgr7_2623 methylthioribulose-1-phosphate dehydratase; methylthioribulose-1-phosphate dehydratase 749212..749838 Nitrosococcus halophilus Nc4 8915713 YP_003526309.1 CDS Nhal_0742 NC_013960.1 749835 750377 D PFAM: acireductone dioxygenase; KEGG: tgr:Tgr7_2624 acireductone dioxygenase ARD; acireductone dioxygenase 749835..750377 Nitrosococcus halophilus Nc4 8915714 YP_003526310.1 CDS Nhal_0743 NC_013960.1 750399 751058 D KEGG: mca:MCA0797 HAD superfamily hydrolase; TIGRFAM: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 750399..751058 Nitrosococcus halophilus Nc4 8915715 YP_003526311.1 CDS Nhal_0744 NC_013960.1 751055 752533 R PFAM: protein of unknown function DUF344; KEGG: mca:MCA3113 hypothetical protein; hypothetical protein complement(751055..752533) Nitrosococcus halophilus Nc4 8915716 YP_003526312.1 CDS Nhal_0745 NC_013960.1 752820 753515 D KEGG: noc:Noc_0955 hypothetical protein; hypothetical protein 752820..753515 Nitrosococcus halophilus Nc4 8915717 YP_003526313.1 CDS Nhal_0746 NC_013960.1 753653 756043 D PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: mca:MCA1587 phosphoketolase; phosphoketolase 753653..756043 Nitrosococcus halophilus Nc4 8915718 YP_003526314.1 CDS Nhal_0747 NC_013960.1 756151 757248 D PFAM: transposase IS605 OrfB; transposase IS891/IS1136/IS1341 family; KEGG: noc:Noc_1587 transposase; transposase IS605 OrfB 756151..757248 Nitrosococcus halophilus Nc4 8915719 YP_003526315.1 CDS Nhal_0748 NC_013960.1 757305 758171 D PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: noc:Noc_0956 hypothetical protein; YicC domain-containing protein 757305..758171 Nitrosococcus halophilus Nc4 8915720 YP_003526316.1 CDS Nhal_0749 NC_013960.1 758501 759625 R PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: mca:MCA0275 DNA-binding protein; hypothetical protein complement(758501..759625) Nitrosococcus halophilus Nc4 8915721 YP_003526317.1 CDS Nhal_0750 NC_013960.1 759618 759947 R KEGG: mca:MCA0276 killer suppression protein HigA; killer suppression protein HigA complement(759618..759947) Nitrosococcus halophilus Nc4 8915722 YP_003526318.1 CDS Nhal_0751 NC_013960.1 760222 762621 D PFAM: N-6 DNA methylase; KEGG: psp:PSPPH_0107 type I restriction-modification system DNA methylase; N-6 DNA methylase 760222..762621 Nitrosococcus halophilus Nc4 8915723 YP_003526319.1 CDS Nhal_0752 NC_013960.1 762635 763960 D PFAM: restriction modification system DNA specificity domain; KEGG: dol:Dole_0277 restriction modification system DNA specificity subunit; restriction modification system DNA specificity domain-containing protein 762635..763960 Nitrosococcus halophilus Nc4 8915724 YP_003526320.1 CDS Nhal_0753 NC_013960.1 764007 765656 D KEGG: dal:Dalk_1276 transcriptional regulator; transcriptional regulator 764007..765656 Nitrosococcus halophilus Nc4 8915725 YP_003526321.1 CDS Nhal_0754 NC_013960.1 765755 768787 D PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase; KEGG: psp:PSPPH_0104 type I restriction-modification system restriction subunit; hypothetical protein 765755..768787 Nitrosococcus halophilus Nc4 8915726 YP_003526322.1 CDS Nhal_0755 NC_013960.1 768880 769527 D KEGG: noc:Noc_1212 guanylate kinase; TIGRFAM: guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; guanylate kinase 768880..769527 Nitrosococcus halophilus Nc4 8915727 YP_003526323.1 CDS Nhal_0756 NC_013960.1 769744 771027 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pna:Pnap_4334 HNH endonuclease; HNH endonuclease 769744..771027 Nitrosococcus halophilus Nc4 8915728 YP_003526324.1 CDS Nhal_0757 NC_013960.1 771253 771513 D TIGRFAM: DNA-directed RNA polymerase subunit omega; PFAM: RNA polymerase Rpb6; KEGG: noc:Noc_1213 RNA polymerase, omega subunit; DNA-directed RNA polymerase subunit omega 771253..771513 Nitrosococcus halophilus Nc4 8915729 YP_003526325.1 CDS Nhal_0758 NC_013960.1 771558 773711 D KEGG: noc:Noc_1214 RelA/SpoT protein; TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; RelA/SpoT family protein 771558..773711 Nitrosococcus halophilus Nc4 8915730 YP_003526326.1 CDS Nhal_0759 NC_013960.1 773740 774126 D TIGRFAM: endoribonuclease L-PSP; PFAM: endoribonuclease L-PSP; KEGG: noc:Noc_1215 YjgF-like protein; endoribonuclease L-PSP 773740..774126 Nitrosococcus halophilus Nc4 8915731 YP_003526327.1 CDS Nhal_0760 NC_013960.1 774101 776239 D KEGG: noc:Noc_1216 ATP-dependent DNA helicase RecG; TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase domain protein; helicase; nucleic acid binding OB-fold tRNA/helicase-type; SMART: DEAD-like helicase ; helicase; ATP-dependent DNA helicase RecG 774101..776239 Nitrosococcus halophilus Nc4 8915732 YP_003526328.1 CDS Nhal_0761 NC_013960.1 776306 777166 D TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: noc:Noc_1217 4-hydroxybenzoate octaprenyltransferase; 4-hydroxybenzoate polyprenyl transferase 776306..777166 Nitrosococcus halophilus Nc4 8915733 YP_003526329.1 CDS Nhal_0762 NC_013960.1 777212 778033 D PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); KEGG: noc:Noc_1218 micrococcal nuclease; nuclease 777212..778033 Nitrosococcus halophilus Nc4 8915734 YP_003526330.1 CDS Nhal_0763 NC_013960.1 778030 778743 R KEGG: noc:Noc_2102 competence protein F; competence protein F complement(778030..778743) Nitrosococcus halophilus Nc4 8915735 YP_003526331.1 CDS Nhal_0764 NC_013960.1 778795 779829 D KEGG: noc:Noc_2101 biotin synthase; TIGRFAM: biotin synthase; PFAM: biotin and thiamin synthesis associated; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 778795..779829 Nitrosococcus halophilus Nc4 8915736 YP_003526332.1 CDS Nhal_0765 NC_013960.1 779836 780999 D KEGG: noc:Noc_2100 8-amino-7-oxononanoate synthase; TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; 8-amino-7-oxononanoate synthase 779836..780999 Nitrosococcus halophilus Nc4 8915737 YP_003526333.1 CDS Nhal_0766 NC_013960.1 780996 781763 D TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold; KEGG: noc:Noc_2099 biotin biosynthesis protein, BioH; bioH protein 780996..781763 Nitrosococcus halophilus Nc4 8915738 YP_003526334.1 CDS Nhal_0767 NC_013960.1 781787 782716 D TIGRFAM: biotin biosynthesis protein BioC; PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: noc:Noc_2098 biotin biosynthesis protein BioC; biotin biosynthesis protein BioC 781787..782716 Nitrosococcus halophilus Nc4 8915739 YP_003526335.1 CDS Nhal_0768 NC_013960.1 782730 783470 D KEGG: noc:Noc_2097 dethiobiotin synthase; TIGRFAM: dethiobiotin synthase; PFAM: cobyrinic acid ac-diamide synthase; dethiobiotin synthase 782730..783470 Nitrosococcus halophilus Nc4 8915740 YP_003526336.1 CDS Nhal_0769 NC_013960.1 783901 784593 D PFAM: toluene tolerance protein; KEGG: noc:Noc_2096 toluene tolerance protein; toluene tolerance protein 783901..784593 Nitrosococcus halophilus Nc4 8915741 YP_003526337.1 CDS Nhal_0770 NC_013960.1 784620 786689 R TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: noc:Noc_2095 NAD synthetase; NAD+ synthetase complement(784620..786689) Nitrosococcus halophilus Nc4 8915742 YP_003526338.1 CDS Nhal_0771 NC_013960.1 786791 786976 D KEGG: cja:CJA_1213 hypothetical protein; hypothetical protein 786791..786976 Nitrosococcus halophilus Nc4 8915743 YP_003526339.1 CDS Nhal_0772 NC_013960.1 787007 787327 D KEGG: mpo:Mpop_0997 hypothetical protein; hypothetical protein 787007..787327 Nitrosococcus halophilus Nc4 8915744 YP_003526340.1 CDS Nhal_0773 NC_013960.1 787327 787518 D hypothetical protein 787327..787518 Nitrosococcus halophilus Nc4 8915745 YP_003526341.1 CDS Nhal_0774 NC_013960.1 787663 788019 D PFAM: protein of unknown function DUF488; KEGG: noc:Noc_2090 hypothetical protein; hypothetical protein 787663..788019 Nitrosococcus halophilus Nc4 8915746 YP_003526342.1 CDS Nhal_0775 NC_013960.1 788188 788847 D KEGG: tgr:Tgr7_1690 phosphoribosyl transferase; phosphoribosyl transferase 788188..788847 Nitrosococcus halophilus Nc4 8915747 YP_003526343.1 CDS Nhal_0776 NC_013960.1 788896 789591 D PFAM: dienelactone hydrolase; KEGG: scl:sce9042 hypothetical protein; dienelactone hydrolase 788896..789591 Nitrosococcus halophilus Nc4 8915748 YP_003526344.1 CDS Nhal_0777 NC_013960.1 789607 789939 D KEGG: noc:Noc_2089 H+-ATPase, subunit H; H+-ATPase subunit H 789607..789939 Nitrosococcus halophilus Nc4 8915749 YP_003526345.1 CDS Nhal_0778 NC_013960.1 789943 791097 D PFAM: H+transporting two-sector ATPase C (AC39) subunit; KEGG: noc:Noc_2088 H+-transporting two-sector ATPase, C (AC39) subunit; H+transporting two-sector ATPase C (AC39) subunit 789943..791097 Nitrosococcus halophilus Nc4 8915750 YP_003526346.1 CDS Nhal_0779 NC_013960.1 791135 793099 D PFAM: V-type ATPase 116 kDa subunit; KEGG: noc:Noc_2087 V-type ATPase, 116 kDa subunit; V-type ATPase 116 kDa subunit 791135..793099 Nitrosococcus halophilus Nc4 8915751 YP_003526347.1 CDS Nhal_0780 NC_013960.1 793125 793577 D PFAM: H+transporting two-sector ATPase C subunit; KEGG: noc:Noc_2086 H+-transporting two-sector ATPase, C subunit; H+transporting two-sector ATPase C subunit 793125..793577 Nitrosococcus halophilus Nc4 8915752 YP_003526348.1 CDS Nhal_0781 NC_013960.1 793577 793969 D KEGG: noc:Noc_2085 hypothetical protein; hypothetical protein 793577..793969 Nitrosococcus halophilus Nc4 8915753 YP_003526349.1 CDS Nhal_0782 NC_013960.1 793966 794619 D PFAM: H+transporting two-sector ATPase E subunit; KEGG: noc:Noc_2084 H+-transporting two-sector ATPase, E subunit; H+transporting two-sector ATPase E subunit 793966..794619 Nitrosococcus halophilus Nc4 8915754 YP_003526350.1 CDS Nhal_0783 NC_013960.1 794612 796393 D PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; KEGG: noc:Noc_2083 V-type ATP synthase subunit A; H(+)-transporting two-sector ATPase 794612..796393 Nitrosococcus halophilus Nc4 8915755 YP_003526351.1 CDS Nhal_0784 NC_013960.1 796390 797817 D PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; KEGG: noc:Noc_2082 V-type ATP synthase subunit B; H(+)-transporting two-sector ATPase 796390..797817 Nitrosococcus halophilus Nc4 8915756 YP_003526352.1 CDS Nhal_0785 NC_013960.1 797817 798434 D TIGRFAM: V-type ATPase, D subunit; PFAM: H+transporting two-sector ATPase D subunit; KEGG: noc:Noc_2081 H+-transporting two-sector ATPase, D subunit; V-type ATPase subunit D 797817..798434 Nitrosococcus halophilus Nc4 8915757 YP_003526353.1 CDS Nhal_0786 NC_013960.1 798608 799336 R hypothetical protein complement(798608..799336) Nitrosococcus halophilus Nc4 8915758 YP_003526354.1 CDS Nhal_0787 NC_013960.1 799603 799872 R KEGG: rpt:Rpal_1136 hypothetical protein; hypothetical protein complement(799603..799872) Nitrosococcus halophilus Nc4 8915759 YP_003526355.1 CDS Nhal_0788 NC_013960.1 799885 800844 R KEGG: rpt:Rpal_1135 hypothetical protein; hypothetical protein complement(799885..800844) Nitrosococcus halophilus Nc4 8915760 YP_003526356.1 CDS Nhal_0789 NC_013960.1 801256 801696 R PFAM: restriction endonuclease; DNA topoisomerase type IA zn finger domain protein; KEGG: noc:Noc_A0010 restriction endonuclease; restriction endonuclease complement(801256..801696) Nitrosococcus halophilus Nc4 8915761 YP_003526357.1 CDS Nhal_0790 NC_013960.1 801760 802104 R KEGG: noc:Noc_A0009 hypothetical protein; hypothetical protein complement(801760..802104) Nitrosococcus halophilus Nc4 8915762 YP_003526358.1 CDS Nhal_0791 NC_013960.1 802144 802248 D hypothetical protein 802144..802248 Nitrosococcus halophilus Nc4 8915763 YP_003526359.1 CDS Nhal_0792 NC_013960.1 802273 803034 D PFAM: transport-associated; KEGG: noc:Noc_1774 periplasmic or secreted lipoprotein; transporter 802273..803034 Nitrosococcus halophilus Nc4 8915764 YP_003526360.1 CDS Nhal_0793 NC_013960.1 803105 803641 R KEGG: noc:Noc_1773 hypothetical protein; hypothetical protein complement(803105..803641) Nitrosococcus halophilus Nc4 8915765 YP_003526361.1 CDS Nhal_0794 NC_013960.1 804002 804274 D PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: noc:Noc_1772 histone-like DNA-binding protein; histone family protein DNA-binding protein 804002..804274 Nitrosococcus halophilus Nc4 8915766 YP_003526362.1 CDS Nhal_0795 NC_013960.1 804567 806480 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: noc:Noc_1771 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 804567..806480 Nitrosococcus halophilus Nc4 8915769 YP_003526363.1 CDS Nhal_0796 NC_013960.1 806482 807693 R PFAM: sodium:dicarboxylate symporter; KEGG: noc:Noc_1770 sodium/dicarboxylate symporter; sodium:dicarboxylate symporter complement(806482..807693) Nitrosococcus halophilus Nc4 8915770 YP_003526364.1 CDS Nhal_0797 NC_013960.1 807779 808558 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: noc:Noc_1769 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(807779..808558) Nitrosococcus halophilus Nc4 8915771 YP_003526365.1 CDS Nhal_0798 NC_013960.1 808685 810874 D PFAM: extracellular solute-binding protein family 5; KEGG: noc:Noc_1768 extracellular solute-binding protein; family 5 extracellular solute-binding protein 808685..810874 Nitrosococcus halophilus Nc4 8915772 YP_003526366.1 CDS Nhal_0800 NC_013960.1 811810 811995 D hypothetical protein 811810..811995 Nitrosococcus halophilus Nc4 8915774 YP_003526367.1 CDS Nhal_0801 NC_013960.1 811995 812153 D hypothetical protein 811995..812153 Nitrosococcus halophilus Nc4 8915775 YP_003526368.1 CDS Nhal_0802 NC_013960.1 812446 812715 R KEGG: bxe:Bxe_B0464 hypothetical protein; hypothetical protein complement(812446..812715) Nitrosococcus halophilus Nc4 8915776 YP_003526369.1 CDS Nhal_0803 NC_013960.1 812780 813070 R KEGG: cti:RALTA_A2185 hypothetical protein; hypothetical protein complement(812780..813070) Nitrosococcus halophilus Nc4 8915777 YP_003526370.1 CDS Nhal_0804 NC_013960.1 813697 813909 D PFAM: protein of unknown function UPF0150; KEGG: noc:Noc_1108 hypothetical protein; hypothetical protein 813697..813909 Nitrosococcus halophilus Nc4 8915778 YP_003526371.1 CDS Nhal_0806 NC_013960.1 815090 815428 D TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain protein; KEGG: aha:AHA_0586 protein CsaA; export-related chaperone CsaA 815090..815428 Nitrosococcus halophilus Nc4 8915780 YP_003526372.1 CDS Nhal_0807 NC_013960.1 815514 815924 R KEGG: eba:ebB111 nucleic acid-binding protein; nucleic acid-binding protein complement(815514..815924) Nitrosococcus halophilus Nc4 8915781 YP_003526373.1 CDS Nhal_0808 NC_013960.1 815921 816163 R KEGG: neu:NE1590 hypothetical protein; hypothetical protein complement(815921..816163) Nitrosococcus halophilus Nc4 8915782 YP_003526374.1 CDS Nhal_0809 NC_013960.1 816602 816868 R KEGG: noc:Noc_1760 hypothetical protein; hypothetical protein complement(816602..816868) Nitrosococcus halophilus Nc4 8915783 YP_003526375.1 CDS Nhal_0810 NC_013960.1 816979 817995 D PFAM: ribonuclease T2; KEGG: mca:MCA1293 ribonuclease T2 family protein; ribonuclease T2 816979..817995 Nitrosococcus halophilus Nc4 8915784 YP_003526376.1 CDS Nhal_0811 NC_013960.1 818007 818474 D KEGG: noc:Noc_1595 hypothetical protein; hypothetical protein 818007..818474 Nitrosococcus halophilus Nc4 8915785 YP_003526377.1 CDS Nhal_0812 NC_013960.1 818488 818808 D hypothetical protein 818488..818808 Nitrosococcus halophilus Nc4 8915786 YP_003526378.1 CDS Nhal_0813 NC_013960.1 818873 820675 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_1262 ABC transporter ATPase; ABC transporter 818873..820675 Nitrosococcus halophilus Nc4 8915787 YP_003526379.1 CDS Nhal_0814 NC_013960.1 820878 821057 D hypothetical protein 820878..821057 Nitrosococcus halophilus Nc4 8915788 YP_003526380.1 CDS Nhal_0815 NC_013960.1 821240 821701 D KEGG: noc:Noc_0532 hypothetical protein; hypothetical protein 821240..821701 Nitrosococcus halophilus Nc4 8915789 YP_003526381.1 CDS Nhal_0816 NC_013960.1 821739 822692 D PFAM: lipase class 3; KEGG: mca:MCA0075 lipase family protein; lipase class 3 821739..822692 Nitrosococcus halophilus Nc4 8915790 YP_003526382.1 CDS Nhal_0817 NC_013960.1 822795 823565 D KEGG: hch:HCH_06804 hypothetical protein; hypothetical protein 822795..823565 Nitrosococcus halophilus Nc4 8915791 YP_003526383.1 CDS Nhal_0818 NC_013960.1 823716 823868 R PFAM: CopG domain protein DNA-binding domain protein; CopG domain-containing protein DNA-binding domain-containing protein complement(823716..823868) Nitrosococcus halophilus Nc4 8915792 YP_003526384.1 CDS Nhal_0820 NC_013960.1 825700 826779 D PFAM: Di-haem cytochrome C peroxidase; KEGG: noc:Noc_1263 cytochrome C peroxidase; cytochrome-c peroxidase 825700..826779 Nitrosococcus halophilus Nc4 8915794 YP_003526385.1 CDS Nhal_0822 NC_013960.1 827875 831210 D PFAM: acriflavin resistance protein; KEGG: sfu:Sfum_3380 acriflavin resistance protein; acriflavin resistance protein 827875..831210 Nitrosococcus halophilus Nc4 8915796 YP_003526386.1 CDS Nhal_0823 NC_013960.1 831220 832734 D PFAM: outer membrane efflux protein; KEGG: mca:MCA2154 outer membrane protein CyaE; outer membrane efflux protein 831220..832734 Nitrosococcus halophilus Nc4 8915797 YP_003526387.1 CDS Nhal_0824 NC_013960.1 832834 833862 D TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: cps:CPS_1234 RND family efflux transporter MFP subunit; RND family efflux transporter MFP subunit 832834..833862 Nitrosococcus halophilus Nc4 8915798 YP_003526388.1 CDS Nhal_0825 NC_013960.1 833962 834162 D KEGG: bph:Bphy_3846 hypothetical protein; hypothetical protein 833962..834162 Nitrosococcus halophilus Nc4 8915799 YP_003526389.1 CDS Nhal_0826 NC_013960.1 834212 835744 R PFAM: Forkhead-associated protein; von Willebrand factor type A; SMART: von Willebrand factor type A; Forkhead-associated protein; KEGG: abm:ABSDF3254 hypothetical protein; von Willebrand factor A complement(834212..835744) Nitrosococcus halophilus Nc4 8915800 YP_003526390.1 CDS Nhal_0827 NC_013960.1 835840 836736 D KEGG: tmz:Tmz1t_1979 hypothetical protein; hypothetical protein 835840..836736 Nitrosococcus halophilus Nc4 8915801 YP_003526391.1 CDS Nhal_0828 NC_013960.1 836782 838056 D PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: pmy:Pmen_2313 protein kinase; serine/threonine protein kinase-like protein 836782..838056 Nitrosococcus halophilus Nc4 8915802 YP_003526392.1 CDS Nhal_0829 NC_013960.1 838448 841072 D PFAM: peptidase C14 caspase catalytic subunit p20; Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: hch:HCH_04244 hypothetical protein; peptidase C14 caspase catalytic subunit p20 838448..841072 Nitrosococcus halophilus Nc4 8915803 YP_003526393.1 CDS Nhal_0830 NC_013960.1 841181 842602 R TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: hch:HCH_04240 outer membrane protein domain-containing protein; outer membrane autotransporter barrel domain-containing protein complement(841181..842602) Nitrosococcus halophilus Nc4 8915804 YP_003526394.1 CDS Nhal_0831 NC_013960.1 843179 843958 D KEGG: bxe:Bxe_B0477 protein serine/threonine phosphatases; PFAM: protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; phosphoprotein phosphatase 843179..843958 Nitrosococcus halophilus Nc4 8915805 YP_003526395.1 CDS Nhal_0832 NC_013960.1 843980 845242 R PFAM: sigma-54 factor interaction domain-containing protein; ATPase AAA; SMART: AAA ATPase; KEGG: eba:ebA1664 sigma-N-dependent transcriptional regulator; sigma-54 factor interaction domain-containing protein complement(843980..845242) Nitrosococcus halophilus Nc4 8915806 YP_003526396.1 CDS Nhal_0833 NC_013960.1 845239 848289 R PFAM: ABC transporter; cyclic nucleotide-binding; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: ATPase AAA; cyclic nucleotide-binding; KEGG: eba:ebA1666 fusion of ABC transporter-type transmembrane and ATP binding protein; ABC transporter complement(845239..848289) Nitrosococcus halophilus Nc4 8915807 YP_003526397.1 CDS Nhal_0834 NC_013960.1 848318 849070 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: eba:ebA1670 rotamase (prolyl cis-trans isomerase); PpiC-type peptidyl-prolyl cis-trans isomerase complement(848318..849070) Nitrosococcus halophilus Nc4 8915808 YP_003526398.1 CDS Nhal_0835 NC_013960.1 849152 850528 R PFAM: secretion protein HlyD; KEGG: bxe:Bxe_B0473 secretion protein HylD; secretion protein HlyD complement(849152..850528) Nitrosococcus halophilus Nc4 8915809 YP_003526399.1 CDS Nhal_0836 NC_013960.1 850603 853101 R PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: bpy:Bphyt_3999 FHA domain containing protein; Forkhead-associated protein complement(850603..853101) Nitrosococcus halophilus Nc4 8915810 YP_003526400.1 CDS Nhal_0837 NC_013960.1 853143 854627 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: cti:RALTA_A2177 outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein complement(853143..854627) Nitrosococcus halophilus Nc4 8915811 YP_003526401.1 CDS Nhal_0838 NC_013960.1 855025 856362 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; Forkhead-associated protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; Forkhead-associated protein; KEGG: mxa:MXAN_0353 sigma-54 dependent trancsriptional regulator; Fis family transcriptional regulator complement(855025..856362) Nitrosococcus halophilus Nc4 8915812 YP_003526402.1 CDS Nhal_0839 NC_013960.1 856440 857210 R KEGG: noc:Noc_0931 hypothetical protein; hypothetical protein complement(856440..857210) Nitrosococcus halophilus Nc4 8915813 YP_003526403.1 CDS Nhal_0840 NC_013960.1 857220 857516 R KEGG: noc:Noc_0932 hypothetical protein; hypothetical protein complement(857220..857516) Nitrosococcus halophilus Nc4 8915814 YP_003526404.1 CDS Nhal_0841 NC_013960.1 857740 858717 D PFAM: binding-protein-dependent transporters inner membrane component; KEGG: noc:Noc_0933 ABC transporter inner membrane subunit; binding-protein-dependent transporters inner membrane component 857740..858717 Nitrosococcus halophilus Nc4 8915815 YP_003526405.1 CDS Nhal_0842 NC_013960.1 858718 860127 D PFAM: binding-protein-dependent transporters inner membrane component; KEGG: noc:Noc_0934 ABC transporter inner membrane subunit; binding-protein-dependent transporters inner membrane component 858718..860127 Nitrosococcus halophilus Nc4 8915816 YP_003526406.1 CDS Nhal_0843 NC_013960.1 860130 860999 D PFAM: ion transporter; KEGG: tgr:Tgr7_1920 ion transporter; ion transporter 860130..860999 Nitrosococcus halophilus Nc4 8915817 YP_003526407.1 CDS Nhal_0844 NC_013960.1 860992 863007 D KEGG: noc:Noc_0936 oligopeptide/dipeptide ABC transporter ATPase; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; peptide ABC transporter ATPase 860992..863007 Nitrosococcus halophilus Nc4 8915818 YP_003526408.1 CDS Nhal_0845 NC_013960.1 863075 863785 D KEGG: sfu:Sfum_2864 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 863075..863785 Nitrosococcus halophilus Nc4 8915819 YP_003526409.1 CDS Nhal_0846 NC_013960.1 864123 865421 D PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: noc:Noc_0937 hypothetical protein; hypothetical protein 864123..865421 Nitrosococcus halophilus Nc4 8915820 YP_003526410.1 CDS Nhal_0847 NC_013960.1 865548 866195 D KEGG: noc:Noc_0938 ubiquinone biosynthesis protein; ubiquinone biosynthesis protein 865548..866195 Nitrosococcus halophilus Nc4 8915821 YP_003526411.1 CDS Nhal_0848 NC_013960.1 866265 867155 D PFAM: peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: noc:Noc_0939 peptidoglycan-binding LysM; peptidoglycan-binding LysM 866265..867155 Nitrosococcus halophilus Nc4 8915822 YP_003526412.1 CDS Nhal_0849 NC_013960.1 867250 868509 R TIGRFAM: cytochrome C biogenesis protein CcmI; PFAM: hypothetical protein; KEGG: noc:Noc_0940 cytochrome C biogenesis factor; cytochrome C biogenesis protein CcmI complement(867250..868509) Nitrosococcus halophilus Nc4 8915823 YP_003526413.1 CDS Nhal_0850 NC_013960.1 868511 868966 R PFAM: cytochrome C biogenesis protein; KEGG: noc:Noc_0941 cytochrome C biogenesis protein; cytochrome C biogenesis protein complement(868511..868966) Nitrosococcus halophilus Nc4 8915824 YP_003526414.1 CDS Nhal_0851 NC_013960.1 868968 869501 R TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: redoxin; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: noc:Noc_0942 periplasmic protein thiol-disulfide oxidoreductase DsbE; periplasmic protein thiol/disulfide oxidoreductase DsbE complement(868968..869501) Nitrosococcus halophilus Nc4 8915825 YP_003526415.1 CDS Nhal_0852 NC_013960.1 869501 871486 R TIGRFAM: cytochrome C biogenesis protein CcmF; PFAM: cytochrome C assembly protein; KEGG: noc:Noc_0943 cytochrome C biogenesis protein CcmF; cytochrome C biogenesis protein CcmF complement(869501..871486) Nitrosococcus halophilus Nc4 8915826 YP_003526416.1 CDS Nhal_0853 NC_013960.1 871483 871926 R PFAM: CcmE/CycJ protein; KEGG: noc:Noc_0944 cytochrome c-type biogenesis protein CcmE; CcmE/CycJ protein complement(871483..871926) Nitrosococcus halophilus Nc4 8915827 YP_003526417.1 CDS Nhal_0854 NC_013960.1 871923 872081 R TIGRFAM: heme exporter protein CcmD; PFAM: Heme exporter protein D (CcmD); KEGG: mca:MCA0420 heme exporter protein CcmD; heme exporter protein CcmD complement(871923..872081) Nitrosococcus halophilus Nc4 8915828 YP_003526418.1 CDS Nhal_0855 NC_013960.1 872306 873058 R TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome C assembly protein; KEGG: noc:Noc_0946 cytochrome C biogenesis protein CcmC; heme exporter protein CcmC complement(872306..873058) Nitrosococcus halophilus Nc4 8915829 YP_003526419.1 CDS Nhal_0856 NC_013960.1 873068 873772 R TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: noc:Noc_0947 cytochrome C biogenesis protein CcmB; heme exporter protein CcmB complement(873068..873772) Nitrosococcus halophilus Nc4 8915830 YP_003526420.1 CDS Nhal_0857 NC_013960.1 873781 874431 R KEGG: noc:Noc_0948 heme exporter protein CcmA; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter; SMART: ATPase AAA; heme exporter protein CcmA complement(873781..874431) Nitrosococcus halophilus Nc4 8915831 YP_003526421.1 CDS Nhal_0858 NC_013960.1 874798 876339 D KEGG: noc:Noc_0949 hypothetical protein; hypothetical protein 874798..876339 Nitrosococcus halophilus Nc4 8915832 YP_003526422.1 CDS Nhal_0859 NC_013960.1 876339 877742 D PFAM: GTP-binding protein HSR1-related; KEGG: noc:Noc_0950 GTP-binding protein, HSR1-related; GTP-binding protein HSR1-like protein 876339..877742 Nitrosococcus halophilus Nc4 8915833 YP_003526423.1 CDS Nhal_0860 NC_013960.1 877812 878624 R TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase related; KEGG: noc:Noc_0951 S-adenosylmethionine decarboxylase; S-adenosylmethionine decarboxylase proenzyme complement(877812..878624) Nitrosococcus halophilus Nc4 8915834 YP_003526424.1 CDS Nhal_0861 NC_013960.1 878706 879104 R PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: noc:Noc_0952 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(878706..879104) Nitrosococcus halophilus Nc4 8915835 YP_003526425.1 CDS Nhal_0862 NC_013960.1 879219 879659 R PFAM: OsmC family protein; KEGG: noc:Noc_0953 OsmC-like protein; OsmC family protein complement(879219..879659) Nitrosococcus halophilus Nc4 8915836 YP_003526426.1 CDS Nhal_0863 NC_013960.1 879727 880407 D PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: noc:Noc_0954 cAMP-regulatory protein; cyclic nucleotide-binding protein 879727..880407 Nitrosococcus halophilus Nc4 8915837 YP_003526427.1 CDS Nhal_0864 NC_013960.1 880465 882234 R PFAM: TrkA-C domain protein; citrate transporter; TRAP C4-dicarboxylate transporter permease DctM subunit; KEGG: noc:Noc_1175 TrkA-C, di- and tricarboxylate transporters; TrkA-C domain-containing protein complement(880465..882234) Nitrosococcus halophilus Nc4 8915838 YP_003526428.1 CDS Nhal_0865 NC_013960.1 882344 882532 R KEGG: noc:Noc_1176 hypothetical protein; hypothetical protein complement(882344..882532) Nitrosococcus halophilus Nc4 8915839 YP_003526429.1 CDS Nhal_0866 NC_013960.1 882673 882861 D KEGG: smt:Smal_1303 DoxX family protein; hypothetical protein 882673..882861 Nitrosococcus halophilus Nc4 8915840 YP_003526430.1 CDS Nhal_0867 NC_013960.1 882903 883586 D PFAM: glycosyl transferase family 2; KEGG: bgl:bglu_2p1020 glycosyl transferase, family 2; family 2 glycosyl transferase 882903..883586 Nitrosococcus halophilus Nc4 8915841 YP_003526431.1 CDS Nhal_0868 NC_013960.1 883651 884292 D KEGG: tgr:Tgr7_1957 hypothetical protein; hypothetical protein 883651..884292 Nitrosococcus halophilus Nc4 8915842 YP_003526432.1 CDS Nhal_0869 NC_013960.1 884509 885048 D KEGG: noc:Noc_1178 hypothetical protein; hypothetical protein 884509..885048 Nitrosococcus halophilus Nc4 8915843 YP_003526433.1 CDS Nhal_0870 NC_013960.1 885060 885395 D TIGRFAM: preprotein translocase subunit YajC; PFAM: YajC family protein; KEGG: noc:Noc_1179 preprotein translocase subunit, YajC; preprotein translocase subunit YajC 885060..885395 Nitrosococcus halophilus Nc4 8915844 YP_003526434.1 CDS Nhal_0871 NC_013960.1 885528 886094 D TIGRFAM: deoxycytidine triphosphate deaminase; PFAM: deoxyUTP pyrophosphatase; KEGG: noc:Noc_1180 deoxycytidine triphosphate deaminase; deoxycytidine triphosphate deaminase 885528..886094 Nitrosococcus halophilus Nc4 8915845 YP_003526435.1 CDS Nhal_0872 NC_013960.1 886091 886714 R TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase; KEGG: noc:Noc_1181 phosphoribosylglycinamide formyltransferase; phosphoribosylglycinamide formyltransferase complement(886091..886714) Nitrosococcus halophilus Nc4 8915846 YP_003526436.1 CDS Nhal_0873 NC_013960.1 886711 887787 R KEGG: noc:Noc_1182 phosphoribosylaminoimidazole synthetase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; phosphoribosylformylglycinamidine cyclo-ligase complement(886711..887787) Nitrosococcus halophilus Nc4 8915847 YP_003526437.1 CDS Nhal_0874 NC_013960.1 887941 888999 D KEGG: noc:Noc_1185 hypothetical protein; hypothetical protein 887941..888999 Nitrosococcus halophilus Nc4 8915848 YP_003526438.1 CDS Nhal_0875 NC_013960.1 889009 889614 D PFAM: CDP-alcohol phosphatidyltransferase; KEGG: noc:Noc_1186 CDP-alcohol phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 889009..889614 Nitrosococcus halophilus Nc4 8915849 YP_003526439.1 CDS Nhal_0876 NC_013960.1 889627 890334 D TIGRFAM: DnaA regulatory inactivator Hda; PFAM: Chromosomal replication initiator DnaA; KEGG: noc:Noc_1187 chromosomal replication initiator protein DnaA; DnaA regulatory inactivator Hda 889627..890334 Nitrosococcus halophilus Nc4 8915850 YP_003526440.1 CDS Nhal_0877 NC_013960.1 890353 891399 D KEGG: noc:Noc_1188 signal peptide protein; signal peptide protein 890353..891399 Nitrosococcus halophilus Nc4 8915851 YP_003526441.1 CDS Nhal_0878 NC_013960.1 891451 893187 D TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: noc:Noc_1189 RecJ exonuclease; single-stranded-DNA-specific exonuclease RecJ 891451..893187 Nitrosococcus halophilus Nc4 8915852 YP_003526442.1 CDS Nhal_0879 NC_013960.1 893187 894068 D PFAM: ATP-NAD/AcoX kinase; KEGG: noc:Noc_1190 NAD(+) kinase; ATP-NAD/AcoX kinase 893187..894068 Nitrosococcus halophilus Nc4 8915853 YP_003526443.1 CDS Nhal_0880 NC_013960.1 894065 895768 D TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: noc:Noc_1191 DNA repair protein RecN; DNA repair protein RecN 894065..895768 Nitrosococcus halophilus Nc4 8915854 YP_003526444.1 CDS Nhal_0881 NC_013960.1 895765 896394 R PFAM: hypothetical protein; KEGG: noc:Noc_1193 abortive infection protein; hypothetical protein complement(895765..896394) Nitrosococcus halophilus Nc4 8915855 YP_003526445.1 CDS Nhal_0882 NC_013960.1 896431 896892 R PFAM: ferric-uptake regulator; KEGG: noc:Noc_1194 ferric-uptake regulator; ferric-uptake regulator complement(896431..896892) Nitrosococcus halophilus Nc4 8915856 YP_003526446.1 CDS Nhal_0883 NC_013960.1 897012 897581 D PFAM: SmpA/OmlA domain protein; KEGG: noc:Noc_1195 SmpA/OmlA; SmpA/OmlA domain-containing protein 897012..897581 Nitrosococcus halophilus Nc4 8915857 YP_003526447.1 CDS Nhal_0884 NC_013960.1 897578 897883 R PFAM: protein of unknown function UPF0125; KEGG: noc:Noc_1196 hypothetical protein; hypothetical protein complement(897578..897883) Nitrosococcus halophilus Nc4 8915858 YP_003526448.1 CDS Nhal_0885 NC_013960.1 897885 898325 R PFAM: cyclase/dehydrase; KEGG: noc:Noc_1197 cyclase/dehydrase; cyclase/dehydrase complement(897885..898325) Nitrosococcus halophilus Nc4 8915859 YP_003526449.1 CDS Nhal_0886 NC_013960.1 898343 899710 R PFAM: sodium:neurotransmitter symporter; KEGG: tgr:Tgr7_0963 sodium:neurotransmitter symporter; sodium:neurotransmitter symporter complement(898343..899710) Nitrosococcus halophilus Nc4 8915860 YP_003526450.1 CDS Nhal_0887 NC_013960.1 899821 900303 D TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: noc:Noc_1198 SsrA-binding protein; SsrA-binding protein 899821..900303 Nitrosococcus halophilus Nc4 8915861 YP_003526451.1 CDS Nhal_0889 NC_013960.1 901320 901427 R KEGG: dde:Dde_1859 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase-like protein complement(901320..901427) Nitrosococcus halophilus Nc4 8915864 YP_003526452.1 CDS Nhal_0890 NC_013960.1 901424 901780 R PFAM: protein of unknown function DUF86; KEGG: hha:Hhal_0685 hypothetical protein; hypothetical protein complement(901424..901780) Nitrosococcus halophilus Nc4 8915865 YP_003526453.1 CDS Nhal_0891 NC_013960.1 901773 902063 R PFAM: DNA polymerase beta domain protein region; KEGG: hha:Hhal_0686 DNA polymerase subunit beta; DNA polymerase beta domain-containing protein complement(901773..902063) Nitrosococcus halophilus Nc4 8915866 YP_003526454.1 CDS Nhal_0892 NC_013960.1 902096 905299 R KEGG: sat:SYN_00497 type I restriction-modification system restriction subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase; type I site-specific deoxyribonuclease, HsdR family complement(902096..905299) Nitrosococcus halophilus Nc4 8915867 YP_003526455.1 CDS Nhal_0893 NC_013960.1 905475 905948 R KEGG: afr:AFE_0087 hypothetical protein; hypothetical protein complement(905475..905948) Nitrosococcus halophilus Nc4 8915868 YP_003526456.1 CDS Nhal_0894 NC_013960.1 905945 906655 R KEGG: son:SO_4263 hypothetical protein; hypothetical protein complement(905945..906655) Nitrosococcus halophilus Nc4 8915869 YP_003526457.1 CDS Nhal_0895 NC_013960.1 906673 907686 R KEGG: bcj:BCAL0419 hypothetical protein; hypothetical protein complement(906673..907686) Nitrosococcus halophilus Nc4 8915870 YP_003526458.1 CDS Nhal_0896 NC_013960.1 907688 909325 R PFAM: restriction modification system DNA specificity domain; excinuclease ABC C subunit domain protein; KEGG: maq:Maqu_3382 restriction modification system DNA specificity subunit; restriction modification system DNA specificity domain-containing protein complement(907688..909325) Nitrosococcus halophilus Nc4 8915871 YP_003526459.1 CDS Nhal_0897 NC_013960.1 909322 910881 R PFAM: N-6 DNA methylase; KEGG: sat:SYN_00494 type I restriction-modification system methylation subunit; adenine-specific DNA-methyltransferase complement(909322..910881) Nitrosococcus halophilus Nc4 8915872 YP_003526460.1 CDS Nhal_0898 NC_013960.1 910910 911086 R KEGG: aeh:Mlg_1537 hypothetical protein; hypothetical protein complement(910910..911086) Nitrosococcus halophilus Nc4 8915873 YP_003526461.1 CDS Nhal_0899 NC_013960.1 911323 912027 R TIGRFAM: sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein; KEGG: noc:Noc_2279 sugar fermentation stimulation protein; sugar fermentation stimulation protein complement(911323..912027) Nitrosococcus halophilus Nc4 8915874 YP_003526462.1 CDS Nhal_0900 NC_013960.1 912105 912233 D hypothetical protein 912105..912233 Nitrosococcus halophilus Nc4 8915875 YP_003526463.1 CDS Nhal_0902 NC_013960.1 913131 913628 R KEGG: noc:Noc_2278 hypothetical protein; hypothetical protein complement(913131..913628) Nitrosococcus halophilus Nc4 8915877 YP_003526464.1 CDS Nhal_0903 NC_013960.1 913798 916620 D TIGRFAM: isoleucyl-tRNA synthetase; KEGG: noc:Noc_2277 isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase 913798..916620 Nitrosococcus halophilus Nc4 8915878 YP_003526465.1 CDS Nhal_0904 NC_013960.1 916795 917259 D PFAM: protein of unknown function DUF820; KEGG: noc:Noc_1566 hypothetical protein; hypothetical protein 916795..917259 Nitrosococcus halophilus Nc4 8915879 YP_003526466.1 CDS Nhal_0905 NC_013960.1 917267 917743 D KEGG: noc:Noc_2276 signal peptidase II; TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; lipoprotein signal peptidase 917267..917743 Nitrosococcus halophilus Nc4 8915880 YP_003526467.1 CDS Nhal_0906 NC_013960.1 917861 918346 R KEGG: noc:Noc_2275 general secretion pathway protein H; general secretion pathway protein H complement(917861..918346) Nitrosococcus halophilus Nc4 8915881 YP_003526468.1 CDS Nhal_0907 NC_013960.1 918373 922788 R KEGG: noc:Noc_2274 fimbrial assembly protein; fimbrial assembly protein complement(918373..922788) Nitrosococcus halophilus Nc4 8915882 YP_003526469.1 CDS Nhal_0908 NC_013960.1 922800 923819 R KEGG: noc:Noc_2272 type IV pilus assembly protein PilW; type IV pilus assembly protein PilW complement(922800..923819) Nitrosococcus halophilus Nc4 8915883 YP_003526470.1 CDS Nhal_0909 NC_013960.1 923839 924543 R KEGG: noc:Noc_2273 type IV pilus assembly protein PilX; Tfp pilus assembly protein PilX-like protein complement(923839..924543) Nitrosococcus halophilus Nc4 8915884 YP_003526471.1 CDS Nhal_0910 NC_013960.1 924540 925565 R KEGG: noc:Noc_2272 type IV pilus assembly protein PilW; type IV pilus assembly protein PilW complement(924540..925565) Nitrosococcus halophilus Nc4 8915885 YP_003526472.1 CDS Nhal_0911 NC_013960.1 925562 926077 R TIGRFAM: type IV pilus modification protein PilV; KEGG: noc:Noc_2271 type IV fimbrial biogenesis protein PilV; type IV pilus modification protein PilV complement(925562..926077) Nitrosococcus halophilus Nc4 8915886 YP_003526473.1 CDS Nhal_0912 NC_013960.1 926074 926643 R KEGG: noc:Noc_2270 type-4 fimbrial pilin related signal peptide protein; type-4 fimbrial pilin related signal peptide protein complement(926074..926643) Nitrosococcus halophilus Nc4 8915887 YP_003526474.1 CDS Nhal_0913 NC_013960.1 927006 927230 D hypothetical protein 927006..927230 Nitrosococcus halophilus Nc4 8915888 YP_003526475.1 CDS Nhal_0914 NC_013960.1 927252 928535 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: afr:AFE_1023 HNH endonuclease domain protein; HNH endonuclease 927252..928535 Nitrosococcus halophilus Nc4 8915889 YP_003526476.1 CDS Nhal_0915 NC_013960.1 928643 929734 D TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; KEGG: noc:Noc_2269 FAD dependent oxidoreductase; glycine oxidase ThiO 928643..929734 Nitrosococcus halophilus Nc4 8915890 YP_003526477.1 CDS Nhal_0916 NC_013960.1 929767 930912 R PFAM: transposase IS4 family protein; KEGG: aby:ABAYE3624 IS4 family transposase; transposase IS4 family protein complement(929767..930912) Nitrosococcus halophilus Nc4 8915891 YP_003526478.1 CDS Nhal_0917 NC_013960.1 931354 931626 R PFAM: Fe(II) trafficking protein YggX; KEGG: noc:Noc_2268 hypothetical protein; Fe(II) trafficking protein YggX complement(931354..931626) Nitrosococcus halophilus Nc4 8915892 YP_003526479.1 CDS Nhal_0918 NC_013960.1 931630 932694 R KEGG: noc:Noc_2267 A/G-specific adenine glycosylase MutY; TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; A/G-specific adenine glycosylase complement(931630..932694) Nitrosococcus halophilus Nc4 8915893 YP_003526480.1 CDS Nhal_0919 NC_013960.1 932691 933200 R KEGG: noc:Noc_2266 hypothetical protein; hypothetical protein complement(932691..933200) Nitrosococcus halophilus Nc4 8915894 YP_003526481.1 CDS Nhal_0920 NC_013960.1 933223 935646 R PFAM: AsmA family protein; KEGG: noc:Noc_2265 hypothetical protein; AsmA family protein complement(933223..935646) Nitrosococcus halophilus Nc4 8915895 YP_003526482.1 CDS Nhal_0921 NC_013960.1 935652 936770 R KEGG: noc:Noc_2264 hypothetical protein; hypothetical protein complement(935652..936770) Nitrosococcus halophilus Nc4 8915896 YP_003526483.1 CDS Nhal_0922 NC_013960.1 936853 938175 R PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: noc:Noc_2263 hypothetical protein; hypothetical protein complement(936853..938175) Nitrosococcus halophilus Nc4 8915897 YP_003526484.1 CDS Nhal_0923 NC_013960.1 938325 939164 R PFAM: cytochrome C assembly protein; KEGG: noc:Noc_2262 cytochrome C assembly protein; cytochrome C assembly protein complement(938325..939164) Nitrosococcus halophilus Nc4 8915898 YP_003526485.1 CDS Nhal_0924 NC_013960.1 939389 940747 D KEGG: noc:Noc_2261 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA; signal recognition particle protein 939389..940747 Nitrosococcus halophilus Nc4 8915899 YP_003526486.1 CDS Nhal_0925 NC_013960.1 940832 941074 D TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: noc:Noc_2260 ribosomal protein S16; 30S ribosomal protein S16 940832..941074 Nitrosococcus halophilus Nc4 8915900 YP_003526487.1 CDS Nhal_0926 NC_013960.1 941091 941618 D TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: noc:Noc_2259 16S rRNA processing protein RimM; 16S rRNA processing protein RimM 941091..941618 Nitrosococcus halophilus Nc4 8915901 YP_003526488.1 CDS Nhal_0927 NC_013960.1 941649 942407 D KEGG: noc:Noc_2258 tRNA (guanine-N(1)-)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-N1)-methyltransferase 941649..942407 Nitrosococcus halophilus Nc4 8915902 YP_003526489.1 CDS Nhal_0928 NC_013960.1 942404 942751 D TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; KEGG: noc:Noc_2257 50S ribosomal protein L19; 50S ribosomal protein L19 942404..942751 Nitrosococcus halophilus Nc4 8915903 YP_003526490.1 CDS Nhal_0929 NC_013960.1 942836 943327 D TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: noc:Noc_2256 methylated-DNA-(protein)-cysteine S-methyltransferase; methylated-DNA/protein-cysteine methyltransferase 942836..943327 Nitrosococcus halophilus Nc4 8915904 YP_003526491.1 CDS Nhal_0930 NC_013960.1 943311 944231 D TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase; KEGG: noc:Noc_2255 tyrosine recombinase XerD; tyrosine recombinase XerD 943311..944231 Nitrosococcus halophilus Nc4 8915905 YP_003526492.1 CDS Nhal_0931 NC_013960.1 944312 944794 D PFAM: protein of unknown function DUF520; KEGG: noc:Noc_2254 nucleotide-binding protein; hypothetical protein 944312..944794 Nitrosococcus halophilus Nc4 8915906 YP_003526493.1 CDS Nhal_0932 NC_013960.1 944809 945546 D KEGG: noc:Noc_2253 thiol-disulfide interchange protein DsbC; thiol-disulfide interchange protein DsbC 944809..945546 Nitrosococcus halophilus Nc4 8915907 YP_003526494.1 CDS Nhal_0933 NC_013960.1 945557 946312 R TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase; KEGG: noc:Noc_2252 UDP-2,3-diacylglucosamine hydrolase; UDP-2,3-diacylglucosamine hydrolase complement(945557..946312) Nitrosococcus halophilus Nc4 8915908 YP_003526495.1 CDS Nhal_0934 NC_013960.1 946328 946921 R PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: noc:Noc_2251 peptidylprolyl isomerase; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(946328..946921) Nitrosococcus halophilus Nc4 8915909 YP_003526496.1 CDS Nhal_0935 NC_013960.1 947070 948497 D TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: noc:Noc_2250 glutamyl-tRNA synthetase; glutamyl-tRNA synthetase 947070..948497 Nitrosococcus halophilus Nc4 8915910 YP_003526497.1 CDS Nhal_0936 NC_013960.1 948605 950059 D KEGG: noc:Noc_2249 cysteine--tRNA ligase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); cysteinyl-tRNA synthetase 948605..950059 Nitrosococcus halophilus Nc4 8915911 YP_003526498.1 CDS Nhal_0937 NC_013960.1 950230 951084 R PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: noc:Noc_2248 methylenetetrahydrofolate dehydrogenase (NADP+); methylenetetrahydrofolate dehydrogenase complement(950230..951084) Nitrosococcus halophilus Nc4 8915912 YP_003526499.1 CDS Nhal_0939 NC_013960.1 952145 953368 D PFAM: transposase mutator type; KEGG: son:SO_0708 transposase mutator family protein; transposase mutator type 952145..953368 Nitrosococcus halophilus Nc4 8915916 YP_003526500.1 CDS Nhal_0940 NC_013960.1 953706 953972 D KEGG: noc:Noc_2241 hypothetical protein; hypothetical protein 953706..953972 Nitrosococcus halophilus Nc4 8915917 YP_003526501.1 CDS Nhal_0941 NC_013960.1 953969 954178 D PFAM: protein of unknown function UPF0150; KEGG: noc:Noc_2242 hypothetical protein; hypothetical protein 953969..954178 Nitrosococcus halophilus Nc4 8915918 YP_003526502.1 CDS Nhal_0942 NC_013960.1 954193 954561 D KEGG: geo:Geob_1730 hypothetical protein; hypothetical protein 954193..954561 Nitrosococcus halophilus Nc4 8915919 YP_003526503.1 CDS Nhal_0943 NC_013960.1 954565 954867 D KEGG: rpc:RPC_4286 hypothetical protein; hypothetical protein 954565..954867 Nitrosococcus halophilus Nc4 8915920 YP_003526504.1 CDS Nhal_0944 NC_013960.1 954864 955112 D KEGG: noc:Noc_0411 CopG family protein; CopG family protein 954864..955112 Nitrosococcus halophilus Nc4 8915921 YP_003526505.1 CDS Nhal_0945 NC_013960.1 955129 955329 D PFAM: HicB family protein; KEGG: glo:Glov_0059 HicB family protein; HicB family protein 955129..955329 Nitrosococcus halophilus Nc4 8915922 YP_003526506.1 CDS Nhal_0946 NC_013960.1 955388 956539 R KEGG: avi:Avi_3043 hypothetical protein; hypothetical protein complement(955388..956539) Nitrosococcus halophilus Nc4 8915923 YP_003526507.1 CDS Nhal_0947 NC_013960.1 956536 957033 R KEGG: avi:Avi_3042 hypothetical protein; hypothetical protein complement(956536..957033) Nitrosococcus halophilus Nc4 8915924 YP_003526508.1 CDS Nhal_0948 NC_013960.1 957297 957524 R hypothetical protein complement(957297..957524) Nitrosococcus halophilus Nc4 8915925 YP_003526509.1 CDS Nhal_0949 NC_013960.1 957526 958287 R PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: hit:NTHI1517 hypothetical protein; hypothetical protein complement(957526..958287) Nitrosococcus halophilus Nc4 8915926 YP_003526510.1 CDS Nhal_0950 NC_013960.1 958373 958618 D KEGG: pmr:PMI2424 phage regulatory protein; hypothetical protein 958373..958618 Nitrosococcus halophilus Nc4 8915927 YP_003526511.1 CDS Nhal_0951 NC_013960.1 958615 958803 D hypothetical protein 958615..958803 Nitrosococcus halophilus Nc4 8915928 YP_003526512.1 CDS Nhal_0952 NC_013960.1 958800 959072 D KEGG: reu:Reut_A2382 hypothetical protein; hypothetical protein 958800..959072 Nitrosococcus halophilus Nc4 8915929 YP_003526513.1 CDS Nhal_0953 NC_013960.1 959269 959493 D KEGG: lhk:LHK_01733 KilA-N domain protein; KilA-N domain-containing protein 959269..959493 Nitrosococcus halophilus Nc4 8915930 YP_003526514.1 CDS Nhal_0954 NC_013960.1 959556 960779 D PFAM: transposase mutator type; KEGG: son:SO_0708 transposase mutator family protein; transposase mutator type 959556..960779 Nitrosococcus halophilus Nc4 8915931 YP_003526515.1 CDS Nhal_0955 NC_013960.1 960740 961045 R KEGG: noc:Noc_1602 hypothetical protein; hypothetical protein complement(960740..961045) Nitrosococcus halophilus Nc4 8915932 YP_003526516.1 CDS Nhal_0956 NC_013960.1 961875 962837 R PFAM: integrase family protein; KEGG: slo:Shew_0995 phage integrase family protein; integrase family protein complement(961875..962837) Nitrosococcus halophilus Nc4 8915935 YP_003526517.1 CDS Nhal_0957 NC_013960.1 962821 963039 R KEGG: sbn:Sbal195_3508 hypothetical protein; hypothetical protein complement(962821..963039) Nitrosococcus halophilus Nc4 8915936 YP_003526518.1 CDS Nhal_0958 NC_013960.1 963096 963917 R KEGG: aav:Aave_1743 hypothetical protein; hypothetical protein complement(963096..963917) Nitrosococcus halophilus Nc4 8915937 YP_003526519.1 CDS Nhal_0959 NC_013960.1 963921 964265 R KEGG: eba:ebB1 hypothetical protein; hypothetical protein complement(963921..964265) Nitrosococcus halophilus Nc4 8915938 YP_003526520.1 CDS Nhal_0960 NC_013960.1 964280 964486 R hypothetical protein complement(964280..964486) Nitrosococcus halophilus Nc4 8915939 YP_003526521.1 CDS Nhal_0961 NC_013960.1 964483 964668 R hypothetical protein complement(964483..964668) Nitrosococcus halophilus Nc4 8915940 YP_003526522.1 CDS Nhal_0962 NC_013960.1 964665 964973 R KEGG: mch:Mchl_5565 hypothetical protein; hypothetical protein complement(964665..964973) Nitrosococcus halophilus Nc4 8915941 YP_003526523.1 CDS Nhal_0963 NC_013960.1 964987 965682 R KEGG: eba:ebA7287 hypothetical protein; hypothetical protein complement(964987..965682) Nitrosococcus halophilus Nc4 8915942 YP_003526524.1 CDS Nhal_0964 NC_013960.1 965679 966296 R KEGG: vei:Veis_3656 hypothetical protein; hypothetical protein complement(965679..966296) Nitrosococcus halophilus Nc4 8915943 YP_003526525.1 CDS Nhal_0965 NC_013960.1 966293 966511 R hypothetical protein complement(966293..966511) Nitrosococcus halophilus Nc4 8915944 YP_003526526.1 CDS Nhal_0966 NC_013960.1 966588 966983 R hypothetical protein complement(966588..966983) Nitrosococcus halophilus Nc4 8915945 YP_003526527.1 CDS Nhal_0967 NC_013960.1 966980 967138 R hypothetical protein complement(966980..967138) Nitrosococcus halophilus Nc4 8915946 YP_003526528.1 CDS Nhal_0968 NC_013960.1 967434 967721 D PFAM: protein of unknown function DUF497; KEGG: bpy:Bphyt_3748 protein of unknown function DUF497; hypothetical protein 967434..967721 Nitrosococcus halophilus Nc4 8915947 YP_003526529.1 CDS Nhal_0969 NC_013960.1 967693 968019 D KEGG: gur:Gura_1489 hypothetical protein; hypothetical protein 967693..968019 Nitrosococcus halophilus Nc4 8915948 YP_003526530.1 CDS Nhal_0970 NC_013960.1 968209 968442 R hypothetical protein complement(968209..968442) Nitrosococcus halophilus Nc4 8915949 YP_003526531.1 CDS Nhal_0971 NC_013960.1 968426 969031 R PFAM: CI repressor; KEGG: yen:YE1835 DNA-binding protein; CI repressor complement(968426..969031) Nitrosococcus halophilus Nc4 8915950 YP_003526532.1 CDS Nhal_0972 NC_013960.1 969117 969335 D KEGG: shw:Sputw3181_1182 hypothetical protein; hypothetical protein 969117..969335 Nitrosococcus halophilus Nc4 8915951 YP_003526533.1 CDS Nhal_0973 NC_013960.1 969332 969529 D hypothetical protein 969332..969529 Nitrosococcus halophilus Nc4 8915952 YP_003526534.1 CDS Nhal_0974 NC_013960.1 969526 969798 D hypothetical protein 969526..969798 Nitrosococcus halophilus Nc4 8915953 YP_003526535.1 CDS Nhal_0975 NC_013960.1 969908 970255 D hypothetical protein 969908..970255 Nitrosococcus halophilus Nc4 8915954 YP_003526536.1 CDS Nhal_0976 NC_013960.1 970259 970426 D KEGG: cvi:CV_3858 hypothetical protein; hypothetical protein 970259..970426 Nitrosococcus halophilus Nc4 8915955 YP_003526537.1 CDS Nhal_0977 NC_013960.1 970429 970554 D hypothetical protein 970429..970554 Nitrosococcus halophilus Nc4 8915956 YP_003526538.1 CDS Nhal_0978 NC_013960.1 970730 973162 D KEGG: eba:ebA7287 hypothetical protein; hypothetical protein 970730..973162 Nitrosococcus halophilus Nc4 8915957 YP_003526539.1 CDS Nhal_0979 NC_013960.1 973163 973402 D hypothetical protein 973163..973402 Nitrosococcus halophilus Nc4 8915958 YP_003526540.1 CDS Nhal_0980 NC_013960.1 973484 973681 D KEGG: dvl:Dvul_1677 TraR/DksA family transcriptional regulator; TraR/DksA family transcriptional regulator 973484..973681 Nitrosococcus halophilus Nc4 8915959 YP_003526541.1 CDS Nhal_0981 NC_013960.1 973725 974363 D KEGG: eba:ebA7281 hypothetical protein; hypothetical protein 973725..974363 Nitrosococcus halophilus Nc4 8915960 YP_003526542.1 CDS Nhal_0982 NC_013960.1 974370 975425 D PFAM: BRO domain protein; KEGG: ngk:NGK_2037 phage associated protein; BRO domain-containing protein 974370..975425 Nitrosococcus halophilus Nc4 8915961 YP_003526543.1 CDS Nhal_0983 NC_013960.1 975534 976484 D PFAM: BRO domain protein; KEGG: bav:BAV1428 antirepressor; BRO domain-containing protein 975534..976484 Nitrosococcus halophilus Nc4 8915962 YP_003526544.1 CDS Nhal_0984 NC_013960.1 976486 978444 D PFAM: terminase GpA; KEGG: eba:ebA7278 terminase (bacteriophage), large subunit; terminase GpA 976486..978444 Nitrosococcus halophilus Nc4 8915963 YP_003526545.1 CDS Nhal_0985 NC_013960.1 978453 978734 D KEGG: dac:Daci_3404 hypothetical protein; hypothetical protein 978453..978734 Nitrosococcus halophilus Nc4 8915964 YP_003526546.1 CDS Nhal_0986 NC_013960.1 978765 979052 D KEGG: pna:Pnap_2256 hypothetical protein; hypothetical protein 978765..979052 Nitrosococcus halophilus Nc4 8915965 YP_003526547.1 CDS Nhal_0987 NC_013960.1 979342 979527 D hypothetical protein 979342..979527 Nitrosococcus halophilus Nc4 8915966 YP_003526548.1 CDS Nhal_0988 NC_013960.1 979556 980101 D PFAM: GCN5-related N-acetyltransferase; KEGG: dac:Daci_1863 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 979556..980101 Nitrosococcus halophilus Nc4 8915967 YP_003526549.1 CDS Nhal_0989 NC_013960.1 980164 980523 D KEGG: xfa:XF2527 hypothetical protein; hypothetical protein 980164..980523 Nitrosococcus halophilus Nc4 8915968 YP_003526550.1 CDS Nhal_0990 NC_013960.1 980715 981590 R PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: abc:ACICU_00863 site-specific DNA methylase; D12 class N6 adenine-specific DNA methyltransferase complement(980715..981590) Nitrosococcus halophilus Nc4 8915969 YP_003526551.1 CDS Nhal_0991 NC_013960.1 981615 983114 R KEGG: ecm:EcSMS35_4320 hypothetical protein; hypothetical protein complement(981615..983114) Nitrosococcus halophilus Nc4 8915970 YP_003526552.1 CDS Nhal_0992 NC_013960.1 983402 984463 D KEGG: ppw:PputW619_3960 hypothetical protein; hypothetical protein 983402..984463 Nitrosococcus halophilus Nc4 8915971 YP_003526553.1 CDS Nhal_0993 NC_013960.1 984553 984993 D PFAM: protein of unknown function DUF29; KEGG: noc:Noc_0766 hypothetical protein; hypothetical protein 984553..984993 Nitrosococcus halophilus Nc4 8915972 YP_003526554.1 CDS Nhal_0994 NC_013960.1 985121 985405 D KEGG: pna:Pnap_2255 hypothetical protein; hypothetical protein 985121..985405 Nitrosococcus halophilus Nc4 8915973 YP_003526555.1 CDS Nhal_0995 NC_013960.1 985405 985821 D PFAM: glycoside hydrolase family 24; KEGG: cbc:CbuK_0811 lysozyme; glycoside hydrolase family protein 985405..985821 Nitrosococcus halophilus Nc4 8915974 YP_003526556.1 CDS Nhal_0996 NC_013960.1 985818 987296 D TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; KEGG: pna:Pnap_2254 lambda family phage portal protein; phage portal protein, lambda family 985818..987296 Nitrosococcus halophilus Nc4 8915975 YP_003526557.1 CDS Nhal_0997 NC_013960.1 987302 989659 D PFAM: peptidase S14 ClpP; KEGG: xfa:XF0511 hypothetical protein; peptidase S14 ClpP 987302..989659 Nitrosococcus halophilus Nc4 8915976 YP_003526558.1 CDS Nhal_0998 NC_013960.1 989666 990079 D KEGG: pnu:Pnuc_1119 hypothetical protein; hypothetical protein 989666..990079 Nitrosococcus halophilus Nc4 8915977 YP_003526559.1 CDS Nhal_0999 NC_013960.1 990085 990447 D KEGG: pna:Pnap_2252 RecA/RadA recombinase; RecA/RadA recombinase 990085..990447 Nitrosococcus halophilus Nc4 8915978 YP_003526560.1 CDS Nhal_1000 NC_013960.1 990447 990752 D hypothetical protein 990447..990752 Nitrosococcus halophilus Nc4 8915979 YP_003526561.1 CDS Nhal_1001 NC_013960.1 990745 991044 D hypothetical protein 990745..991044 Nitrosococcus halophilus Nc4 8915980 YP_003526562.1 CDS Nhal_1002 NC_013960.1 991044 991655 D KEGG: dac:Daci_3441 hypothetical protein; hypothetical protein 991044..991655 Nitrosococcus halophilus Nc4 8915981 YP_003526563.1 CDS Nhal_1003 NC_013960.1 991652 992092 D hypothetical protein 991652..992092 Nitrosococcus halophilus Nc4 8915982 YP_003526564.1 CDS Nhal_1004 NC_013960.1 992149 992310 D hypothetical protein 992149..992310 Nitrosococcus halophilus Nc4 8915983 YP_003526565.1 CDS Nhal_1005 NC_013960.1 992383 993129 D KEGG: dac:Daci_3443 hypothetical protein; hypothetical protein 992383..993129 Nitrosococcus halophilus Nc4 8915984 YP_003526566.1 CDS Nhal_1006 NC_013960.1 993160 996453 D KEGG: son:SO_0680 hypothetical protein; hypothetical protein 993160..996453 Nitrosococcus halophilus Nc4 8915985 YP_003526567.1 CDS Nhal_1007 NC_013960.1 996470 996802 R PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: dvm:DvMF_1635 transcriptional regulator, XRE family; hypothetical protein complement(996470..996802) Nitrosococcus halophilus Nc4 8915986 YP_003526568.1 CDS Nhal_1008 NC_013960.1 996786 997040 R KEGG: bav:BAV1312A phage protein; phage protein complement(996786..997040) Nitrosococcus halophilus Nc4 8915987 YP_003526569.1 CDS Nhal_1009 NC_013960.1 997110 997493 D KEGG: mca:MCA2671 hypothetical protein; hypothetical protein 997110..997493 Nitrosococcus halophilus Nc4 8915988 YP_003526570.1 CDS Nhal_1010 NC_013960.1 997494 1000835 D KEGG: dia:Dtpsy_3195 hypothetical protein; hypothetical protein 997494..1000835 Nitrosococcus halophilus Nc4 8915989 YP_003526571.1 CDS Nhal_1011 NC_013960.1 1000832 1001926 D KEGG: mca:MCA2673 hypothetical protein; hypothetical protein 1000832..1001926 Nitrosococcus halophilus Nc4 8915990 YP_003526572.1 CDS Nhal_1012 NC_013960.1 1001923 1002213 D KEGG: rso:RSc0877 hypothetical protein; hypothetical protein 1001923..1002213 Nitrosococcus halophilus Nc4 8915991 YP_003526573.1 CDS Nhal_1013 NC_013960.1 1002210 1002599 D KEGG: mca:MCA2675 hypothetical protein; hypothetical protein 1002210..1002599 Nitrosococcus halophilus Nc4 8915992 YP_003526574.1 CDS Nhal_1014 NC_013960.1 1002603 1004579 D KEGG: mca:MCA2676 hypothetical protein; hypothetical protein 1002603..1004579 Nitrosococcus halophilus Nc4 8915993 YP_003526575.1 CDS Nhal_1015 NC_013960.1 1004576 1004803 D KEGG: aav:Aave_4092 hypothetical protein; hypothetical protein 1004576..1004803 Nitrosococcus halophilus Nc4 8915994 YP_003526576.1 CDS Nhal_1016 NC_013960.1 1004888 1005184 R hypothetical protein complement(1004888..1005184) Nitrosococcus halophilus Nc4 8915995 YP_003526577.1 CDS Nhal_1017 NC_013960.1 1005207 1005716 R KEGG: shm:Shewmr7_2590 hypothetical protein; hypothetical protein complement(1005207..1005716) Nitrosococcus halophilus Nc4 8915996 YP_003526578.1 CDS Nhal_1018 NC_013960.1 1005821 1006843 R KEGG: pmr:PMI0512 phage antirepressor protein; hypothetical protein complement(1005821..1006843) Nitrosococcus halophilus Nc4 8915997 YP_003526579.1 CDS Nhal_1019 NC_013960.1 1007415 1007585 D KEGG: hch:HCH_06383 transposase; transposase 1007415..1007585 Nitrosococcus halophilus Nc4 8915998 YP_003526580.1 CDS Nhal_1020 NC_013960.1 1007627 1008760 R KEGG: vsp:VS_1370 conserved hypothetical protein; endonuclease; hypothetical protein complement(1007627..1008760) Nitrosococcus halophilus Nc4 8915999 YP_003526581.1 CDS Nhal_1021 NC_013960.1 1008760 1009473 R KEGG: vsp:VS_1368 hypothetical protein; hypothetical protein complement(1008760..1009473) Nitrosococcus halophilus Nc4 8916000 YP_003526582.1 CDS Nhal_1022 NC_013960.1 1009482 1011302 R KEGG: vsp:VS_1367 hypothetical protein; hypothetical protein complement(1009482..1011302) Nitrosococcus halophilus Nc4 8916001 YP_003526583.1 CDS Nhal_1023 NC_013960.1 1011281 1011667 R KEGG: pmr:PMI2479 plasmid-related protein; hypothetical protein complement(1011281..1011667) Nitrosococcus halophilus Nc4 8916002 YP_003526584.1 CDS Nhal_1024 NC_013960.1 1011835 1012608 R KEGG: bja:bll1929 hypothetical protein; hypothetical protein complement(1011835..1012608) Nitrosococcus halophilus Nc4 8916003 YP_003526585.1 CDS Nhal_1025 NC_013960.1 1012590 1012718 R hypothetical protein complement(1012590..1012718) Nitrosococcus halophilus Nc4 8916004 YP_003526586.1 CDS Nhal_1026 NC_013960.1 1012715 1013242 R TIGRFAM: carbon storage regulator; PFAM: carbon storage regulator; KEGG: cbg:CbuG_0954 carbon storage regulator; carbon storage regulator complement(1012715..1013242) Nitrosococcus halophilus Nc4 8916005 YP_003526587.1 CDS Nhal_1027 NC_013960.1 1013666 1013881 R PFAM: protein of unknown function UPF0150; KEGG: noc:Noc_0452 hypothetical protein; hypothetical protein complement(1013666..1013881) Nitrosococcus halophilus Nc4 8916006 YP_003526588.1 CDS Nhal_1028 NC_013960.1 1013892 1014077 R PFAM: YcfA family protein; KEGG: mpo:Mpop_3128 YcfA family protein; YcfA family protein complement(1013892..1014077) Nitrosococcus halophilus Nc4 8916007 YP_003526589.1 CDS Nhal_1029 NC_013960.1 1014284 1015216 R KEGG: rle:RL1102 hypothetical protein; hypothetical protein complement(1014284..1015216) Nitrosococcus halophilus Nc4 8916008 YP_003526590.1 CDS Nhal_1030 NC_013960.1 1015316 1016038 R KEGG: hch:HCH_05640 hypothetical protein; hypothetical protein complement(1015316..1016038) Nitrosococcus halophilus Nc4 8916009 YP_003526591.1 CDS Nhal_1031 NC_013960.1 1017766 1019913 R TIGRFAM: phage/plasmid primase, P4 family; PFAM: Bifunctional DNA primase/polymerase ; primase P4 ; Primase 1; KEGG: bcn:Bcen_0448 phage-plasmid primase P4-like; phage/plasmid primase, P4 family complement(1017766..1019913) Nitrosococcus halophilus Nc4 8916010 YP_003526592.1 CDS Nhal_1032 NC_013960.1 1019931 1020152 R PFAM: prophage CP4-57 regulator; KEGG: avn:Avin_17010 prophage CP4-57 regulatory, AlpA-like protein; prophage CP4-57 regulator complement(1019931..1020152) Nitrosococcus halophilus Nc4 8916011 YP_003526593.1 CDS Nhal_1033 NC_013960.1 1020308 1021048 R hypothetical protein complement(1020308..1021048) Nitrosococcus halophilus Nc4 8916012 YP_003526594.1 CDS Nhal_1034 NC_013960.1 1021220 1021420 R KEGG: eba:p1B34 hypothetical protein; hypothetical protein complement(1021220..1021420) Nitrosococcus halophilus Nc4 8916013 YP_003526595.1 CDS Nhal_1035 NC_013960.1 1021417 1021689 R KEGG: eba:p1B35 hypothetical protein; hypothetical protein complement(1021417..1021689) Nitrosococcus halophilus Nc4 8916014 YP_003526596.1 CDS Nhal_1036 NC_013960.1 1021686 1022888 R PFAM: integrase family protein; KEGG: ppd:Ppro_3121 phage integrase family protein; integrase family protein complement(1021686..1022888) Nitrosococcus halophilus Nc4 8916015 YP_003526597.1 CDS Nhal_1037 NC_013960.1 1023112 1023249 R hypothetical protein complement(1023112..1023249) Nitrosococcus halophilus Nc4 8916017 YP_003526598.1 CDS Nhal_1038 NC_013960.1 1023493 1023930 R PFAM: protein of unknown function DUF29; KEGG: noc:Noc_0766 hypothetical protein; hypothetical protein complement(1023493..1023930) Nitrosococcus halophilus Nc4 8916018 YP_003526599.1 CDS Nhal_1039 NC_013960.1 1024670 1026889 D TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: tau:Tola_1180 type I restriction-modification system, M subunit; type I restriction-modification system, M subunit 1024670..1026889 Nitrosococcus halophilus Nc4 8916019 YP_003526600.1 CDS Nhal_1040 NC_013960.1 1026901 1028121 D PFAM: restriction modification system DNA specificity domain; KEGG: pla:Plav_2346 restriction modification system DNA specificity subunit; restriction modification system DNA specificity domain-containing protein 1026901..1028121 Nitrosococcus halophilus Nc4 8916020 YP_003526601.1 CDS Nhal_1041 NC_013960.1 1028118 1028825 D KEGG: son:SO_4263 hypothetical protein; hypothetical protein 1028118..1028825 Nitrosococcus halophilus Nc4 8916021 YP_003526602.1 CDS Nhal_1042 NC_013960.1 1028822 1029307 D KEGG: hso:HS_0557 phage P1-related protein; phage P1-like protein 1028822..1029307 Nitrosococcus halophilus Nc4 8916022 YP_003526603.1 CDS Nhal_1043 NC_013960.1 1029594 1030049 D KEGG: noc:Noc_0405 hypothetical protein; hypothetical protein 1029594..1030049 Nitrosococcus halophilus Nc4 8916023 YP_003526604.1 CDS Nhal_1045 NC_013960.1 1033242 1033973 D PFAM: protein of unknown function DUF45; KEGG: bid:Bind_2675 hypothetical protein; hypothetical protein 1033242..1033973 Nitrosococcus halophilus Nc4 8916025 YP_003526605.1 CDS Nhal_1046 NC_013960.1 1034056 1034331 D KEGG: glo:Glov_2251 HicA protein; HicA protein 1034056..1034331 Nitrosococcus halophilus Nc4 8916026 YP_003526606.1 CDS Nhal_1047 NC_013960.1 1034335 1034679 D PFAM: HicB family protein; KEGG: glo:Glov_2250 HicB family protein; HicB family protein 1034335..1034679 Nitrosococcus halophilus Nc4 8916027 YP_003526607.1 CDS Nhal_1048 NC_013960.1 1034725 1037175 R PFAM: peptidase S16; KEGG: rfr:Rfer_0831 ATP-dependent protease; peptidase S16 complement(1034725..1037175) Nitrosococcus halophilus Nc4 8916028 YP_003526608.1 CDS Nhal_1049 NC_013960.1 1037773 1038138 R KEGG: cps:CPS_3528 hypothetical protein; hypothetical protein complement(1037773..1038138) Nitrosococcus halophilus Nc4 8916029 YP_003526609.1 CDS Nhal_1050 NC_013960.1 1038570 1038800 D KEGG: Strc; stereocilin; hypothetical protein 1038570..1038800 Nitrosococcus halophilus Nc4 8916030 YP_003526610.1 CDS Nhal_1051 NC_013960.1 1038862 1039065 D hypothetical protein 1038862..1039065 Nitrosococcus halophilus Nc4 8916031 YP_003526611.1 CDS Nhal_1052 NC_013960.1 1039212 1039829 D TIGRFAM: alpha-ribazole phosphatase; PFAM: phosphoglycerate mutase; KEGG: noc:Noc_1928 phosphoglycerate/bisphosphoglycerate mutase; alpha-ribazole phosphatase 1039212..1039829 Nitrosococcus halophilus Nc4 8916032 YP_003526612.1 CDS Nhal_1053 NC_013960.1 1040008 1040775 R KEGG: noc:Noc_1927 hypothetical protein; hypothetical protein complement(1040008..1040775) Nitrosococcus halophilus Nc4 8916033 YP_003526613.1 CDS Nhal_1054 NC_013960.1 1041188 1043119 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: noc:Noc_1925 TonB-dependent receptor; TonB-dependent receptor 1041188..1043119 Nitrosococcus halophilus Nc4 8916034 YP_003526614.1 CDS Nhal_1055 NC_013960.1 1043385 1044014 D KEGG: pla:Plav_1287 hypothetical protein; hypothetical protein 1043385..1044014 Nitrosococcus halophilus Nc4 8916035 YP_003526615.1 CDS Nhal_1056 NC_013960.1 1044098 1045204 D KEGG: noc:Noc_1545 ferrochelatase; TIGRFAM: ferrochelatase; PFAM: ferrochelatase; ferrochelatase 1044098..1045204 Nitrosococcus halophilus Nc4 8916036 YP_003526616.1 CDS Nhal_1057 NC_013960.1 1045232 1045639 R PFAM: protein of unknown function UPF0047; KEGG: sat:SYN_00473 cytoplasmic protein; hypothetical protein complement(1045232..1045639) Nitrosococcus halophilus Nc4 8916037 YP_003526617.1 CDS Nhal_1058 NC_013960.1 1045714 1046523 D PFAM: peptidase T2 asparaginase 2; KEGG: tgr:Tgr7_0555 peptidase T2 asparaginase 2; peptidase T2 asparaginase 2 1045714..1046523 Nitrosococcus halophilus Nc4 8916038 YP_003526618.1 CDS Nhal_1059 NC_013960.1 1046712 1047284 D KEGG: noc:Noc_1546 protein-L-isoaspartate(D-aspartate) O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 1046712..1047284 Nitrosococcus halophilus Nc4 8916039 YP_003526619.1 CDS Nhal_1060 NC_013960.1 1047315 1048199 D KEGG: mno:Mnod_2988 GTPase or GTP-binding protein-like protein; GTPase or GTP-binding protein-like protein 1047315..1048199 Nitrosococcus halophilus Nc4 8916040 YP_003526620.1 CDS Nhal_1061 NC_013960.1 1048261 1049616 D PFAM: major facilitator superfamily MFS_1; KEGG: noc:Noc_1547 major facilitator transporter; major facilitator superfamily protein 1048261..1049616 Nitrosococcus halophilus Nc4 8916041 YP_003526621.1 CDS Nhal_1062 NC_013960.1 1049655 1050701 R PFAM: succinylglutamate desuccinylase/aspartoacylase; KEGG: noc:Noc_1548 succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase complement(1049655..1050701) Nitrosococcus halophilus Nc4 8916042 YP_003526622.1 CDS Nhal_1063 NC_013960.1 1050705 1051610 R TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp; protein of unknown function DUF201; KEGG: noc:Noc_1549 S6 modification enzyme RimK; RimK family alpha-L-glutamate ligase complement(1050705..1051610) Nitrosococcus halophilus Nc4 8916043 YP_003526623.1 CDS Nhal_1064 NC_013960.1 1051624 1052133 R PFAM: protein of unknown function DUF785; KEGG: noc:Noc_1550 hypothetical protein; hypothetical protein complement(1051624..1052133) Nitrosococcus halophilus Nc4 8916044 YP_003526624.1 CDS Nhal_1065 NC_013960.1 1052367 1054715 D KEGG: noc:Noc_1552 phosphoenolpyruvate-protein phosphotransferase; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; GAF domain protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; SMART: GAF domain protein; phosphoenolpyruvate-protein phosphotransferase 1052367..1054715 Nitrosococcus halophilus Nc4 8916045 YP_003526625.1 CDS Nhal_1066 NC_013960.1 1054787 1056706 R PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: noc:Noc_1555 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(1054787..1056706) Nitrosococcus halophilus Nc4 8916046 YP_003526626.1 CDS Nhal_1067 NC_013960.1 1057012 1058019 R KEGG: noc:Noc_1556 ribonuclease Z; ribonuclease Z complement(1057012..1058019) Nitrosococcus halophilus Nc4 8916047 YP_003526627.1 CDS Nhal_1068 NC_013960.1 1058090 1058488 R PFAM: zinc finger DksA/TraR C4-type; KEGG: noc:Noc_1557 hypothetical protein; zinc finger DksA/TraR C4-type complement(1058090..1058488) Nitrosococcus halophilus Nc4 8916048 YP_003526628.1 CDS Nhal_1069 NC_013960.1 1058755 1059348 R KEGG: dar:Daro_2260 cytochrome C family protein; hypothetical protein complement(1058755..1059348) Nitrosococcus halophilus Nc4 8916049 YP_003526629.1 CDS Nhal_1070 NC_013960.1 1059994 1061202 D KEGG: noc:Noc_0883 poly(A) polymerase, PcnB; TIGRFAM: poly(A) polymerase; PFAM: polynucleotide adenylyltransferase region; poly(A) polymerase 1059994..1061202 Nitrosococcus halophilus Nc4 8916051 YP_003526630.1 CDS Nhal_1071 NC_013960.1 1061208 1061684 D KEGG: noc:Noc_0884 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1061208..1061684 Nitrosococcus halophilus Nc4 8916052 YP_003526631.1 CDS Nhal_1072 NC_013960.1 1061681 1062475 D KEGG: noc:Noc_0885 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase 1061681..1062475 Nitrosococcus halophilus Nc4 8916053 YP_003526632.1 CDS Nhal_1073 NC_013960.1 1062475 1063326 D KEGG: noc:Noc_0886 cytidyltransferase-related; TIGRFAM: pantoate/beta-alanine ligase; cytidyltransferase-related domain protein; PFAM: Pantoate-beta-alanine ligase; pantoate/beta-alanine ligase 1062475..1063326 Nitrosococcus halophilus Nc4 8916054 YP_003526633.1 CDS Nhal_1074 NC_013960.1 1063393 1063773 D KEGG: noc:Noc_0887 aspartate alpha-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: aspartate decarboxylase; aspartate 1-decarboxylase 1063393..1063773 Nitrosococcus halophilus Nc4 8916055 YP_003526634.1 CDS Nhal_1075 NC_013960.1 1063870 1064157 D PFAM: acylphosphatase; KEGG: noc:Noc_0888 acylphosphatase; acylphosphatase 1063870..1064157 Nitrosococcus halophilus Nc4 8916056 YP_003526635.1 CDS Nhal_1076 NC_013960.1 1064306 1065448 D TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: pin:Ping_3063 transposase, IS605 OrfB family protein; transposase, IS605 OrfB family 1064306..1065448 Nitrosococcus halophilus Nc4 8916057 YP_003526636.1 CDS Nhal_1077 NC_013960.1 1065519 1065728 R hypothetical protein complement(1065519..1065728) Nitrosococcus halophilus Nc4 8916058 YP_003526637.1 CDS Nhal_1078 NC_013960.1 1065974 1066486 D PFAM: multicopper oxidase type 3; KEGG: noc:Noc_0889 multicopper oxidase type 3; multicopper oxidase type 3 1065974..1066486 Nitrosococcus halophilus Nc4 8916059 YP_003526638.1 CDS Nhal_1079 NC_013960.1 1066844 1067938 D PFAM: multicopper oxidase type 3; multicopper oxidase type 1; multicopper oxidase type 2; KEGG: net:Neut_1406 multicopper oxidase type 3; multicopper oxidase type 3 1066844..1067938 Nitrosococcus halophilus Nc4 8916060 YP_003526639.1 CDS Nhal_1080 NC_013960.1 1067944 1068675 D PFAM: cytochrome C class I; KEGG: neu:NE0926 cytochrome C, class I; cytochrome C class I 1067944..1068675 Nitrosococcus halophilus Nc4 8916061 YP_003526640.1 CDS Nhal_1081 NC_013960.1 1068672 1069049 D KEGG: swd:Swoo_1415 cytochrome C class I; cytochrome C class I 1068672..1069049 Nitrosococcus halophilus Nc4 8916062 YP_003526641.1 CDS Nhal_1082 NC_013960.1 1069096 1070058 D PFAM: multicopper oxidase type 3; KEGG: swd:Swoo_1417 multicopper oxidase type 3; nitrite reductase 1069096..1070058 Nitrosococcus halophilus Nc4 8916063 YP_003526642.1 CDS Nhal_1083 NC_013960.1 1070171 1070767 R KEGG: noc:Noc_0890 hypothetical protein; hypothetical protein complement(1070171..1070767) Nitrosococcus halophilus Nc4 8916064 YP_003526643.1 CDS Nhal_1084 NC_013960.1 1070819 1072384 R PFAM: GntR family transcriptional regulator; aminotransferase class I and II; SMART: GntR family transcriptional regulator; KEGG: noc:Noc_0891 transcriptional regulator; GntR family transcriptional regulator complement(1070819..1072384) Nitrosococcus halophilus Nc4 8916065 YP_003526644.1 CDS Nhal_1085 NC_013960.1 1072933 1074675 D KEGG: noc:Noc_0892 hydroxylamine oxidase; hydroxylamine oxidase 1072933..1074675 Nitrosococcus halophilus Nc4 8916066 YP_003526645.1 CDS Nhal_1086 NC_013960.1 1074682 1075737 D KEGG: noc:Noc_0893 hypothetical protein; hypothetical protein 1074682..1075737 Nitrosococcus halophilus Nc4 8916067 YP_003526646.1 CDS Nhal_1087 NC_013960.1 1075768 1076490 D KEGG: noc:Noc_0894 cytochrome C-554 precursor; cytochrome C-554 1075768..1076490 Nitrosococcus halophilus Nc4 8916068 YP_003526647.1 CDS Nhal_1088 NC_013960.1 1076510 1077169 D PFAM: NapC/NirT cytochrome C domain protein; KEGG: noc:Noc_0895 NapC/NirT cytochrome C-like; NapC/NirT cytochrome C domain-containing protein 1076510..1077169 Nitrosococcus halophilus Nc4 8916069 YP_003526648.1 CDS Nhal_1089 NC_013960.1 1077260 1077823 R PFAM: lytic transglycosylase catalytic; KEGG: noc:Noc_0896 lytic transglycosylase, catalytic; lytic transglycosylase complement(1077260..1077823) Nitrosococcus halophilus Nc4 8916070 YP_003526649.1 CDS Nhal_1090 NC_013960.1 1077820 1079547 R KEGG: noc:Noc_0897 prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; anticodon-binding domain protein; prolyl-tRNA synthetase complement(1077820..1079547) Nitrosococcus halophilus Nc4 8916071 YP_003526650.1 CDS Nhal_1091 NC_013960.1 1079827 1080258 D KEGG: noc:Noc_0899 nucleoside-diphosphate kinase; PFAM: nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase; nucleoside-diphosphate kinase 1079827..1080258 Nitrosococcus halophilus Nc4 8916072 YP_003526651.1 CDS Nhal_1092 NC_013960.1 1080277 1081395 D TIGRFAM:radical SAM protein; PFAM: radical SAM domain protein; KEGG: noc:Noc_0900 hypothetical protein; radical SAM protein 1080277..1081395 Nitrosococcus halophilus Nc4 8916073 YP_003526652.1 CDS Nhal_1093 NC_013960.1 1081392 1082180 D KEGG: noc:Noc_0901 tfp pilus assembly protein PilF; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: hypothetical protein; hypothetical protein; SMART: hypothetical protein; type IV pilus biogenesis/stability protein PilW 1081392..1082180 Nitrosococcus halophilus Nc4 8916074 YP_003526653.1 CDS Nhal_1094 NC_013960.1 1082183 1083154 D KEGG: azo:azo0926 transcriptional regulator; transcriptional regulator 1082183..1083154 Nitrosococcus halophilus Nc4 8916075 YP_003526654.1 CDS Nhal_1095 NC_013960.1 1083215 1084480 D KEGG: noc:Noc_0902 histidyl-tRNA synthetase, class IIA; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); anticodon-binding domain protein; histidyl-tRNA synthetase 1083215..1084480 Nitrosococcus halophilus Nc4 8916076 YP_003526655.1 CDS Nhal_1096 NC_013960.1 1084499 1086169 D PFAM: phosphoglucose isomerase (PGI); KEGG: noc:Noc_0903 glucose-6-phosphate isomerase; glucose-6-phosphate isomerase 1084499..1086169 Nitrosococcus halophilus Nc4 8916077 YP_003526656.1 CDS Nhal_1097 NC_013960.1 1086187 1088436 R KEGG: noc:Noc_0904 glycogen branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase all-beta; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; 1,4-alpha-glucan branching protein complement(1086187..1088436) Nitrosococcus halophilus Nc4 8916078 YP_003526657.1 CDS Nhal_1098 NC_013960.1 1088523 1089794 D TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: nucleotidyl transferase; KEGG: noc:Noc_0905 glucose-1-phosphate adenylyltransferase; glucose-1-phosphate adenylyltransferase 1088523..1089794 Nitrosococcus halophilus Nc4 8916079 YP_003526658.1 CDS Nhal_1099 NC_013960.1 1090100 1091548 D KEGG: noc:Noc_0906 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; 4-alpha-glucanotransferase 1090100..1091548 Nitrosococcus halophilus Nc4 8916080 YP_003526659.1 CDS Nhal_1100 NC_013960.1 1091579 1091971 D TIGRFAM: glycine cleavage system protein H; PFAM: glycine cleavage H-protein; KEGG: noc:Noc_0907 glycine cleavage H-protein; glycine cleavage system protein H 1091579..1091971 Nitrosococcus halophilus Nc4 8916081 YP_003526660.1 CDS Nhal_1101 NC_013960.1 1091990 1093348 D PFAM: glycine cleavage system P-protein; KEGG: noc:Noc_0908 glycine dehydrogenase subunit 1; glycine dehydrogenase 1091990..1093348 Nitrosococcus halophilus Nc4 8916082 YP_003526661.1 CDS Nhal_1102 NC_013960.1 1093312 1094442 R PFAM: protein of unknown function UPF0075; KEGG: noc:Noc_0909 anhydro-N-acetylmuramic acid kinase; hypothetical protein complement(1093312..1094442) Nitrosococcus halophilus Nc4 8916083 YP_003526662.1 CDS Nhal_1103 NC_013960.1 1094457 1095902 R PFAM: peptidase M23; KEGG: noc:Noc_0910 peptidase M23B; peptidase M23 complement(1094457..1095902) Nitrosococcus halophilus Nc4 8916084 YP_003526663.1 CDS Nhal_1104 NC_013960.1 1096295 1097512 D KEGG: noc:Noc_0911 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; tyrosyl-tRNA synthetase 1096295..1097512 Nitrosococcus halophilus Nc4 8916085 YP_003526664.1 CDS Nhal_1105 NC_013960.1 1103374 1103895 D PFAM: phosphoglycerate mutase; KEGG: azc:AZC_1661 phosphohistidine phosphatase; phosphoglycerate mutase 1103374..1103895 Nitrosococcus halophilus Nc4 8916091 YP_003526665.1 CDS Nhal_1106 NC_013960.1 1103974 1104342 R KEGG: noc:Noc_0912 hypothetical protein; hypothetical protein complement(1103974..1104342) Nitrosococcus halophilus Nc4 8916092 YP_003526666.1 CDS Nhal_1107 NC_013960.1 1104828 1104974 D hypothetical protein 1104828..1104974 Nitrosococcus halophilus Nc4 8916093 YP_003526667.1 CDS Nhal_1108 NC_013960.1 1105020 1105787 D PFAM: methyltransferase type 11; cyclopropane-fatty-acyl-phospholipid synthase; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: noc:Noc_0914 phosphatidylethanolamine N-methyltransferase; phosphatidylethanolamine N-methyltransferase 1105020..1105787 Nitrosococcus halophilus Nc4 8916094 YP_003526668.1 CDS Nhal_1109 NC_013960.1 1105984 1106856 R KEGG: noc:Noc_0915 hypothetical protein; hypothetical protein complement(1105984..1106856) Nitrosococcus halophilus Nc4 8916095 YP_003526669.1 CDS Nhal_1110 NC_013960.1 1107086 1107751 R PFAM: rhomboid family protein; KEGG: noc:Noc_0916 rhomboid-like protein; rhomboid family protein complement(1107086..1107751) Nitrosococcus halophilus Nc4 8916096 YP_003526670.1 CDS Nhal_1111 NC_013960.1 1107800 1108477 D PFAM: peptidase M22 glycoprotease; KEGG: noc:Noc_0917 peptidase M22, glycoprotease; peptidase M22 glycoprotease 1107800..1108477 Nitrosococcus halophilus Nc4 8916097 YP_003526671.1 CDS Nhal_1112 NC_013960.1 1108584 1109552 D PFAM: radical SAM protein; KEGG: eba:ebA4360 hypothetical protein; radical SAM protein 1108584..1109552 Nitrosococcus halophilus Nc4 8916098 YP_003526672.1 CDS Nhal_1114 NC_013960.1 1110045 1111169 D PFAM: methyltransferase type 11; KEGG: scl:sce5622 methyltransferase; type 11 methyltransferase 1110045..1111169 Nitrosococcus halophilus Nc4 8916100 YP_003526673.1 CDS Nhal_1115 NC_013960.1 1111207 1113789 R KEGG: noc:Noc_0919 DNA mismatch repair protein; TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS IV domain protein; MutS III domain protein; SMART: DNA mismatch repair protein MutS; MutS III domain protein; DNA mismatch repair protein MutS complement(1111207..1113789) Nitrosococcus halophilus Nc4 8916101 YP_003526674.1 CDS Nhal_1116 NC_013960.1 1114054 1114542 D PFAM: damage inducible protein CinA; KEGG: noc:Noc_0922 CinA-like protein; damage inducible protein CinA 1114054..1114542 Nitrosococcus halophilus Nc4 8916102 YP_003526675.1 CDS Nhal_1117 NC_013960.1 1114520 1115059 D TIGRFAM: 2'-5' RNA ligase; PFAM: phosphoesterase HXTX; KEGG: noc:Noc_0923 2',5' RNA ligase; 2'-5' RNA ligase 1114520..1115059 Nitrosococcus halophilus Nc4 8916103 YP_003526676.1 CDS Nhal_1118 NC_013960.1 1115166 1116194 D KEGG: noc:Noc_0924 DNA recombination protein, RecA; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: ATPase AAA; recA protein 1115166..1116194 Nitrosococcus halophilus Nc4 8916104 YP_003526677.1 CDS Nhal_1119 NC_013960.1 1116203 1116655 D PFAM: RecX family transcriptional regulator; KEGG: noc:Noc_0925 RecX family transcriptional regulator; RecX family transcriptional regulator 1116203..1116655 Nitrosococcus halophilus Nc4 8916105 YP_003526678.1 CDS Nhal_1120 NC_013960.1 1116680 1119301 D KEGG: noc:Noc_0926 alanine--tRNA ligase; TIGRFAM: alanyl-tRNA synthetase; PFAM: alanyl-tRNA synthetase class IIc; phosphoesterase DHHA1; threonyl/alanyl tRNA synthetase SAD; alanyl-tRNA synthetase 1116680..1119301 Nitrosococcus halophilus Nc4 8916106 YP_003526679.1 CDS Nhal_1121 NC_013960.1 1119380 1120621 D TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; KEGG: noc:Noc_0927 aspartate kinase; aspartate kinase 1119380..1120621 Nitrosococcus halophilus Nc4 8916107 YP_003526680.1 CDS Nhal_1122 NC_013960.1 1120882 1121139 D TIGRFAM: carbon storage regulator; PFAM: carbon storage regulator; KEGG: noc:Noc_0928 carbon storage regulator; carbon storage regulator 1120882..1121139 Nitrosococcus halophilus Nc4 8916108 YP_003526681.1 CDS Nhal_1125 NC_013960.1 1122368 1122790 R hypothetical protein complement(1122368..1122790) Nitrosococcus halophilus Nc4 8916113 YP_003526682.1 CDS Nhal_1126 NC_013960.1 1122736 1122978 R hypothetical protein complement(1122736..1122978) Nitrosococcus halophilus Nc4 8916114 YP_003526683.1 CDS Nhal_1127 NC_013960.1 1123370 1123627 D PFAM: plasmid stabilization system; KEGG: bgl:bglu_1g12000 hypothetical protein; plasmid stabilization system 1123370..1123627 Nitrosococcus halophilus Nc4 8916115 YP_003526684.1 CDS Nhal_1128 NC_013960.1 1123624 1124010 D PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: noc:Noc_2542 XRE family transcriptional regulator; hypothetical protein 1123624..1124010 Nitrosococcus halophilus Nc4 8916116 YP_003526685.1 CDS Nhal_1129 NC_013960.1 1124243 1125856 D PFAM: transposase IS4 family protein; KEGG: shn:Shewana3_3655 IS4 family transposase; transposase IS4 family protein 1124243..1125856 Nitrosococcus halophilus Nc4 8916117 YP_003526686.1 CDS Nhal_1131 NC_013960.1 1126742 1127476 D PFAM: IS1 transposase; KEGG: prw:PsycPRwf_1938 IS1 transposase; IS1 transposase 1126742..1127476 Nitrosococcus halophilus Nc4 8916119 YP_003526687.1 CDS Nhal_1132 NC_013960.1 1127483 1127605 R KEGG: saz:Sama_2781 hypothetical protein; hypothetical protein complement(1127483..1127605) Nitrosococcus halophilus Nc4 8916120 YP_003526688.1 CDS Nhal_1133 NC_013960.1 1127962 1128609 R KEGG: hha:Hhal_1440 hypothetical protein; hypothetical protein complement(1127962..1128609) Nitrosococcus halophilus Nc4 8916121 YP_003526689.1 CDS Nhal_1134 NC_013960.1 1128656 1129435 R hypothetical protein complement(1128656..1129435) Nitrosococcus halophilus Nc4 8916122 YP_003526690.1 CDS Nhal_1135 NC_013960.1 1129488 1129760 D hypothetical protein 1129488..1129760 Nitrosococcus halophilus Nc4 8916123 YP_003526691.1 CDS Nhal_1136 NC_013960.1 1129757 1129963 D hypothetical protein 1129757..1129963 Nitrosococcus halophilus Nc4 8916124 YP_003526692.1 CDS Nhal_1137 NC_013960.1 1129964 1130395 D KEGG: bid:Bind_3889 hypothetical protein; hypothetical protein 1129964..1130395 Nitrosococcus halophilus Nc4 8916125 YP_003526693.1 CDS Nhal_1138 NC_013960.1 1130728 1130961 D hypothetical protein 1130728..1130961 Nitrosococcus halophilus Nc4 8916126 YP_003526694.1 CDS Nhal_1139 NC_013960.1 1131178 1131534 D KEGG: xoo:XOO0600 hypothetical protein; hypothetical protein 1131178..1131534 Nitrosococcus halophilus Nc4 8916127 YP_003526695.1 CDS Nhal_1140 NC_013960.1 1131551 1131961 D hypothetical protein 1131551..1131961 Nitrosococcus halophilus Nc4 8916128 YP_003526696.1 CDS Nhal_1141 NC_013960.1 1132002 1132283 D KEGG: sml:Smlt1976 hypothetical protein; hypothetical protein 1132002..1132283 Nitrosococcus halophilus Nc4 8916129 YP_003526697.1 CDS Nhal_1142 NC_013960.1 1132517 1133971 D PFAM: catalase domain protein; KEGG: csa:Csal_0803 catalase; catalase 1132517..1133971 Nitrosococcus halophilus Nc4 8916130 YP_003526698.1 CDS Nhal_1143 NC_013960.1 1134367 1134564 D hypothetical protein 1134367..1134564 Nitrosococcus halophilus Nc4 8916131 YP_003526699.1 CDS Nhal_1145 NC_013960.1 1136258 1136536 D PFAM: plasmid maintenance system killer; KEGG: noc:Noc_2762 plasmid maintenance system killer; plasmid maintenance system killer 1136258..1136536 Nitrosococcus halophilus Nc4 8916133 YP_003526700.1 CDS Nhal_1146 NC_013960.1 1136549 1136851 D KEGG: noc:Noc_2763 virulence-associated protein, TIGRFAM: addiction module antidote protein, HigA family; PFAM: hypothetical protein; SMART: hypothetical protein; HigA family addiction module antidote protein 1136549..1136851 Nitrosococcus halophilus Nc4 8916134 YP_003526701.1 CDS Nhal_1147 NC_013960.1 1136955 1138178 R PFAM: transposase mutator type; KEGG: son:SO_0708 transposase mutator family protein; transposase mutator type complement(1136955..1138178) Nitrosococcus halophilus Nc4 8916135 YP_003526702.1 CDS Nhal_1148 NC_013960.1 1138389 1140899 R KEGG: dar:Daro_0972 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; response regulator receiver; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; response regulator receiver; PAS domain containing protein; diguanylate cyclase complement(1138389..1140899) Nitrosococcus halophilus Nc4 8916136 YP_003526703.1 CDS Nhal_1149 NC_013960.1 1141138 1141584 R TIGRFAM: lipoprotein A; PFAM: Rare lipoprotein A; KEGG: bte:BTH_I3150 lipoprotein A family protein; lipoprotein A complement(1141138..1141584) Nitrosococcus halophilus Nc4 8916137 YP_003526704.1 CDS Nhal_1150 NC_013960.1 1141605 1141979 R KEGG: pca:Pcar_2748 hypothetical protein; hypothetical protein complement(1141605..1141979) Nitrosococcus halophilus Nc4 8916138 YP_003526705.1 CDS Nhal_1151 NC_013960.1 1142048 1142491 D PFAM: heat shock protein Hsp20; KEGG: eba:ebA2730 HSP20 family protein; heat shock protein Hsp20 1142048..1142491 Nitrosococcus halophilus Nc4 8916139 YP_003526706.1 CDS Nhal_1152 NC_013960.1 1142510 1142905 D PFAM: heat shock protein Hsp20; KEGG: mpt:Mpe_A2043 heat shock protein; heat shock protein Hsp20 1142510..1142905 Nitrosococcus halophilus Nc4 8916140 YP_003526707.1 CDS Nhal_1153 NC_013960.1 1143219 1144154 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_2142 ABC transporter ATPase; ABC transporter 1143219..1144154 Nitrosococcus halophilus Nc4 8916141 YP_003526708.1 CDS Nhal_1154 NC_013960.1 1144160 1147084 D KEGG: noc:Noc_2141 ABC transporter inner membrane protein; ABC transporter permease 1144160..1147084 Nitrosococcus halophilus Nc4 8916142 YP_003526709.1 CDS Nhal_1155 NC_013960.1 1147097 1148095 D KEGG: noc:Noc_2140 hypothetical protein; hypothetical protein 1147097..1148095 Nitrosococcus halophilus Nc4 8916143 YP_003526710.1 CDS Nhal_1156 NC_013960.1 1148187 1148732 D TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; KEGG: noc:Noc_1587 transposase; transposase, IS605 OrfB family 1148187..1148732 Nitrosococcus halophilus Nc4 8916144 YP_003526711.1 CDS Nhal_1157 NC_013960.1 1148918 1150549 D TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: tgr:Tgr7_0439 chaperonin GroEL; chaperonin GroEL 1148918..1150549 Nitrosococcus halophilus Nc4 8916145 YP_003526712.1 CDS Nhal_1159 NC_013960.1 1151090 1151200 D hypothetical protein 1151090..1151200 Nitrosococcus halophilus Nc4 8916147 YP_003526713.1 CDS Nhal_1160 NC_013960.1 1151252 1152700 D KEGG: noc:Noc_2139 peptidase S1C, Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; protease Do 1151252..1152700 Nitrosococcus halophilus Nc4 8916148 YP_003526714.1 CDS Nhal_1161 NC_013960.1 1152872 1153159 R hypothetical protein complement(1152872..1153159) Nitrosococcus halophilus Nc4 8916149 YP_003526715.1 CDS Nhal_1162 NC_013960.1 1153294 1153497 D hypothetical protein 1153294..1153497 Nitrosococcus halophilus Nc4 8916150 YP_003526716.1 CDS Nhal_1163 NC_013960.1 1153549 1153854 D PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: abc:ACICU_p0029 transcriptional regulator; hypothetical protein 1153549..1153854 Nitrosococcus halophilus Nc4 8916151 YP_003526717.1 CDS Nhal_1164 NC_013960.1 1153927 1154733 D KEGG: bmu:Bmul_4833 hypothetical protein; hypothetical protein 1153927..1154733 Nitrosococcus halophilus Nc4 8916152 YP_003526718.1 CDS Nhal_1168 NC_013960.1 1157563 1158255 D KEGG: noc:Noc_2985 hypothetical protein; hypothetical protein 1157563..1158255 Nitrosococcus halophilus Nc4 8916156 YP_003526719.1 CDS Nhal_1169 NC_013960.1 1158387 1158482 D hypothetical protein 1158387..1158482 Nitrosococcus halophilus Nc4 8916157 YP_003526720.1 CDS Nhal_1170 NC_013960.1 1159468 1161330 D PFAM: NERD domain protein; KEGG: tgr:Tgr7_1772 DNA helicase II; NERD domain-containing protein 1159468..1161330 Nitrosococcus halophilus Nc4 8916158 YP_003526721.1 CDS Nhal_1171 NC_013960.1 1161484 1161990 D TIGRFAM: intracellular protease PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: gme:Gmet_2409 peptidase C56, PfpI; intracellular protease PfpI family 1161484..1161990 Nitrosococcus halophilus Nc4 8916159 YP_003526722.1 CDS Nhal_1172 NC_013960.1 1161987 1162265 D PFAM: protein of unknown function DUF77; KEGG: noc:Noc_2138 hypothetical protein; hypothetical protein 1161987..1162265 Nitrosococcus halophilus Nc4 8916160 YP_003526723.1 CDS Nhal_1173 NC_013960.1 1162303 1162767 D TIGRFAM: phosphohistidine phosphatase SixA; PFAM: phosphoglycerate mutase; KEGG: lpn:lpg1987 phosphohistidine phosphatase SixA; phosphohistidine phosphatase SixA 1162303..1162767 Nitrosococcus halophilus Nc4 8916161 YP_003526724.1 CDS Nhal_1175 NC_013960.1 1163139 1164254 R KEGG: noc:Noc_2137 hypothetical protein; hypothetical protein complement(1163139..1164254) Nitrosococcus halophilus Nc4 8916163 YP_003526725.1 CDS Nhal_1176 NC_013960.1 1164458 1166368 D PFAM: thiol-disulphide oxidoreductase DCC; SMART: HTTM domain protein; KEGG: noc:Noc_2136 hypothetical protein; thiol-disulfide oxidoreductase DCC 1164458..1166368 Nitrosococcus halophilus Nc4 8916164 YP_003526726.1 CDS Nhal_1177 NC_013960.1 1166403 1167032 D KEGG: noc:Noc_2135 hypothetical protein; hypothetical protein 1166403..1167032 Nitrosococcus halophilus Nc4 8916165 YP_003526727.1 CDS Nhal_1178 NC_013960.1 1167081 1168433 D PFAM: Na+/H+ antiporter NhaC; KEGG: noc:Noc_2134 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 1167081..1168433 Nitrosococcus halophilus Nc4 8916166 YP_003526728.1 CDS Nhal_1179 NC_013960.1 1168514 1169050 R PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: tgr:Tgr7_2733 phosphoesterase PA-phosphatase related; PA-phosphatase-like phosphoesterase complement(1168514..1169050) Nitrosococcus halophilus Nc4 8916167 YP_003526729.1 CDS Nhal_1180 NC_013960.1 1169305 1169718 R PFAM: transposase IS200-family protein; KEGG: noc:Noc_1500 transposase IS200; transposase IS200-family protein complement(1169305..1169718) Nitrosococcus halophilus Nc4 8916168 YP_003526730.1 CDS Nhal_1181 NC_013960.1 1169775 1170950 D TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_1501 transposase; transposase, IS605 OrfB family 1169775..1170950 Nitrosococcus halophilus Nc4 8916169 YP_003526731.1 CDS Nhal_1182 NC_013960.1 1170993 1171313 R KEGG: nmu:Nmul_A1522 hypothetical protein; hypothetical protein complement(1170993..1171313) Nitrosococcus halophilus Nc4 8916170 YP_003526732.1 CDS Nhal_1183 NC_013960.1 1171427 1172173 D PFAM: SNARE associated Golgi protein; KEGG: noc:Noc_2133 transmembrane phospholipase protein; hypothetical protein 1171427..1172173 Nitrosococcus halophilus Nc4 8916171 YP_003526733.1 CDS Nhal_1184 NC_013960.1 1172183 1172863 D PFAM: endonuclease/exonuclease/phosphatase; KEGG: noc:Noc_2132 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 1172183..1172863 Nitrosococcus halophilus Nc4 8916172 YP_003526734.1 CDS Nhal_1185 NC_013960.1 1172870 1173742 R PFAM: bifunctional deaminase-reductase domain protein; KEGG: noc:Noc_2131 pyrimidine reductase, riboflavin biosynthesis, RibD; bifunctional deaminase-reductase domain-containing protein complement(1172870..1173742) Nitrosococcus halophilus Nc4 8916173 YP_003526735.1 CDS Nhal_1186 NC_013960.1 1173882 1174067 D hypothetical protein 1173882..1174067 Nitrosococcus halophilus Nc4 8916174 YP_003526736.1 CDS Nhal_1187 NC_013960.1 1174205 1174471 D PFAM: protein of unknown function DUF211; KEGG: sfr:Sfri_2293 protein of unknown function DUF211; hypothetical protein 1174205..1174471 Nitrosococcus halophilus Nc4 8916175 YP_003526737.1 CDS Nhal_1188 NC_013960.1 1174526 1175110 D PFAM: protein of unknown function DUF125 transmembrane; KEGG: sfr:Sfri_2292 protein of unknown function DUF125, transmembrane; hypothetical protein 1174526..1175110 Nitrosococcus halophilus Nc4 8916176 YP_003526738.1 CDS Nhal_1189 NC_013960.1 1175203 1178391 D KEGG: noc:Noc_2130 cation transporting ATPase, E1-E2 type; TIGRFAM: calcium-translocating P-type ATPase, PMCA-type; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; ATPase P 1175203..1178391 Nitrosococcus halophilus Nc4 8916177 YP_003526739.1 CDS Nhal_1190 NC_013960.1 1178631 1179518 R KEGG: noc:Noc_2746 hypothetical protein; hypothetical protein complement(1178631..1179518) Nitrosococcus halophilus Nc4 8916178 YP_003526740.1 CDS Nhal_1191 NC_013960.1 1179757 1182240 R KEGG: rpe:RPE_0832 outer membrane protein precursor; hypothetical protein complement(1179757..1182240) Nitrosococcus halophilus Nc4 8916179 YP_003526741.1 CDS Nhal_1192 NC_013960.1 1182245 1183222 R TIGRFAM: cytochrome C family protein; KEGG: rpt:Rpal_0817 cytochrome C family protein; cytochrome C family protein complement(1182245..1183222) Nitrosococcus halophilus Nc4 8916180 YP_003526742.1 CDS Nhal_1193 NC_013960.1 1183260 1184111 D PFAM: NUDIX hydrolase; KEGG: noc:Noc_2749 NUDIX hydrolase; NUDIX hydrolase 1183260..1184111 Nitrosococcus halophilus Nc4 8916181 YP_003526743.1 CDS Nhal_1194 NC_013960.1 1184184 1187666 R TIGRFAM: CRISPR-associated helicase Cas3 family; KEGG: noc:Noc_2750 helicases-like; CRISPR-associated helicase Cas3 family complement(1184184..1187666) Nitrosococcus halophilus Nc4 8916182 YP_003526744.1 CDS Nhal_1195 NC_013960.1 1187663 1188550 R TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: noc:Noc_2751 hypothetical protein; CRISPR-associated protein Cas1 complement(1187663..1188550) Nitrosococcus halophilus Nc4 8916183 YP_003526745.1 CDS Nhal_1196 NC_013960.1 1188871 1190229 D KEGG: noc:Noc_2752 hypothetical protein; hypothetical protein 1188871..1190229 Nitrosococcus halophilus Nc4 8916184 YP_003526746.1 CDS Nhal_1197 NC_013960.1 1190226 1191155 D KEGG: noc:Noc_2753 hypothetical protein; hypothetical protein 1190226..1191155 Nitrosococcus halophilus Nc4 8916185 YP_003526747.1 CDS Nhal_1198 NC_013960.1 1191178 1192236 D TIGRFAM: CRISPR-associated protein, Csy3 family; KEGG: noc:Noc_2754 hypothetical protein; CRISPR-associated protein, Csy3 family 1191178..1192236 Nitrosococcus halophilus Nc4 8916186 YP_003526748.1 CDS Nhal_1199 NC_013960.1 1192251 1192850 D TIGRFAM: CRISPR-associated protein, Csy4 family; KEGG: noc:Noc_2755 hypothetical protein; CRISPR-associated protein, Csy4 family 1192251..1192850 Nitrosococcus halophilus Nc4 8916187 YP_003526749.1 CDS Nhal_1200 NC_013960.1 1195089 1196255 R PFAM: protein of unknown function DUF214; KEGG: noc:Noc_2216 hypothetical protein; hypothetical protein complement(1195089..1196255) Nitrosococcus halophilus Nc4 8916188 YP_003526750.1 CDS Nhal_1201 NC_013960.1 1196258 1197418 R PFAM: protein of unknown function DUF214; KEGG: noc:Noc_2215 hypothetical protein; hypothetical protein complement(1196258..1197418) Nitrosococcus halophilus Nc4 8916189 YP_003526751.1 CDS Nhal_1202 NC_013960.1 1197446 1198141 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_2214 ABC transporter ATPase; ABC transporter complement(1197446..1198141) Nitrosococcus halophilus Nc4 8916190 YP_003526752.1 CDS Nhal_1203 NC_013960.1 1198146 1199369 R TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: noc:Noc_2213 secretion protein HlyD; RND family efflux transporter MFP subunit complement(1198146..1199369) Nitrosococcus halophilus Nc4 8916191 YP_003526753.1 CDS Nhal_1204 NC_013960.1 1199568 1200080 D TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: aav:Aave_0123 CDP-diacylglycerol--serine O-phosphatidyltransferase; CDP-diacylglycerol/serine O-phosphatidyltransferase 1199568..1200080 Nitrosococcus halophilus Nc4 8916192 YP_003526754.1 CDS Nhal_1205 NC_013960.1 1200146 1200583 D PFAM: UspA domain protein; KEGG: noc:Noc_2210 universal stress protein UspA; UspA domain-containing protein 1200146..1200583 Nitrosococcus halophilus Nc4 8916193 YP_003526755.1 CDS Nhal_1206 NC_013960.1 1200721 1201611 D TIGRFAM: methylisocitrate lyase; KEGG: noc:Noc_2209 2-methylisocitrate lyase; methylisocitrate lyase 1200721..1201611 Nitrosococcus halophilus Nc4 8916194 YP_003526756.1 CDS Nhal_1207 NC_013960.1 1201608 1202732 D KEGG: noc:Noc_2208 2-methylcitrate synthase/citrate synthase II; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: citrate synthase; 2-methylcitrate synthase/citrate synthase II 1201608..1202732 Nitrosococcus halophilus Nc4 8916195 YP_003526757.1 CDS Nhal_1208 NC_013960.1 1202745 1204196 D KEGG: noc:Noc_2207 2-methylcitrate dehydratase; TIGRFAM: 2-methylcitrate dehydratase; PFAM: MmgE/PrpD family protein; 2-methylcitrate dehydratase 1202745..1204196 Nitrosococcus halophilus Nc4 8916196 YP_003526758.1 CDS Nhal_1209 NC_013960.1 1204443 1204685 D TIGRFAM: AbrB family transcriptional regulator; PFAM: SpoVT/AbrB domain protein; KEGG: noc:Noc_2206 AbrB family transcriptional regulator; AbrB family transcriptional regulator 1204443..1204685 Nitrosococcus halophilus Nc4 8916197 YP_003526759.1 CDS Nhal_1210 NC_013960.1 1204669 1205121 D PFAM: PilT protein domain protein; KEGG: noc:Noc_2205 PilT protein-like; PilT protein domain-containing protein 1204669..1205121 Nitrosococcus halophilus Nc4 8916198 YP_003526760.1 CDS Nhal_1211 NC_013960.1 1205312 1206436 R PFAM: dehydrogenase; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: noc:Noc_1433 branched-chain alpha-keto acid dehydrogenase subunit E2; dihydrolipoyllysine-residue (2-methylpropanoyl)transferase complement(1205312..1206436) Nitrosococcus halophilus Nc4 8916199 YP_003526761.1 CDS Nhal_1212 NC_013960.1 1206433 1207413 R PFAM: transketolase; transketolase domain protein; KEGG: noc:Noc_1434 transketolase; transketolase complement(1206433..1207413) Nitrosococcus halophilus Nc4 8916200 YP_003526762.1 CDS Nhal_1213 NC_013960.1 1207406 1208482 R KEGG: noc:Noc_1435 pyruvate dehydrogenase (lipoamide); TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, subunit alpha; PFAM: dehydrogenase E1 component; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha complement(1207406..1208482) Nitrosococcus halophilus Nc4 8916201 YP_003526763.1 CDS Nhal_1214 NC_013960.1 1208597 1209712 R PFAM: Glu/Leu/Phe/Val dehydrogenase dimerisation region; Glu/Leu/Phe/Val dehydrogenase; KEGG: noc:Noc_1436 Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerization region complement(1208597..1209712) Nitrosococcus halophilus Nc4 8916202 YP_003526764.1 CDS Nhal_1215 NC_013960.1 1209898 1210761 D PFAM: tryptophan 23-dioxygenase; KEGG: spe:Spro_3022 tryptophan 23-dioxygenase; tryptophan 23-dioxygenase 1209898..1210761 Nitrosococcus halophilus Nc4 8916203 YP_003526765.1 CDS Nhal_1216 NC_013960.1 1210727 1211956 D PFAM: aminotransferase class V; KEGG: swp:swp_0261 kynureninase; class V aminotransferase 1210727..1211956 Nitrosococcus halophilus Nc4 8916204 YP_003526766.1 CDS Nhal_1217 NC_013960.1 1212089 1213144 D KEGG: noc:Noc_1437 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 1212089..1213144 Nitrosococcus halophilus Nc4 8916205 YP_003526767.1 CDS Nhal_1218 NC_013960.1 1213146 1214264 D PFAM: homogentisate 12-dioxygenase; KEGG: noc:Noc_1438 homogentisate 1,2-dioxygenase; homogentisate 12-dioxygenase 1213146..1214264 Nitrosococcus halophilus Nc4 8916206 YP_003526768.1 CDS Nhal_1219 NC_013960.1 1214318 1215295 D PFAM: fumarylacetoacetate hydrolase; KEGG: noc:Noc_1439 fumarylacetoacetate hydrolase; fumarylacetoacetate hydrolase 1214318..1215295 Nitrosococcus halophilus Nc4 8916207 YP_003526769.1 CDS Nhal_1220 NC_013960.1 1215289 1215921 D TIGRFAM: maleylacetoacetate isomerase; PFAM: glutathione S-transferase domain; KEGG: noc:Noc_1440 maleylacetoacetate isomerase; maleylacetoacetate isomerase 1215289..1215921 Nitrosococcus halophilus Nc4 8916208 YP_003526770.1 CDS Nhal_1221 NC_013960.1 1216368 1217303 D KEGG: noc:Noc_1441 hypothetical protein; hypothetical protein 1216368..1217303 Nitrosococcus halophilus Nc4 8916209 YP_003526771.1 CDS Nhal_1222 NC_013960.1 1217369 1217878 D KEGG: noc:Noc_1442 hypothetical protein; hypothetical protein 1217369..1217878 Nitrosococcus halophilus Nc4 8916210 YP_003526772.1 CDS Nhal_1223 NC_013960.1 1217896 1219596 R PFAM: stage II sporulation E family protein; Forkhead-associated protein; GAF domain protein; SMART: protein phosphatase 2C domain protein; Forkhead-associated protein; GAF domain protein; KEGG: sfu:Sfum_2453 serine phosphatase; stage II sporulation E family protein complement(1217896..1219596) Nitrosococcus halophilus Nc4 8916211 YP_003526773.1 CDS Nhal_1224 NC_013960.1 1219758 1220516 D PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: noc:Noc_1759 alpha/beta hydrolase fold hydrolase or acyltransferase; alpha/beta hydrolase fold protein 1219758..1220516 Nitrosococcus halophilus Nc4 8916212 YP_003526774.1 CDS Nhal_1225 NC_013960.1 1220521 1222605 R KEGG: noc:Noc_1758 PAS sensor diguanylate cyclase/phophodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; response regulator receiver; PAS fold domain protein; hypothetical protein; SMART: EAL domain protein; GGDEF domain containing protein; response regulator receiver; PAS domain containing protein; diguanylate cyclase complement(1220521..1222605) Nitrosococcus halophilus Nc4 8916213 YP_003526775.1 CDS Nhal_1226 NC_013960.1 1222598 1222711 R hypothetical protein complement(1222598..1222711) Nitrosococcus halophilus Nc4 8916214 YP_003526776.1 CDS Nhal_1228 NC_013960.1 1223281 1224231 D PFAM: oxidoreductase; KEGG: noc:Noc_1755 oxidoreductase; oxidoreductase 1223281..1224231 Nitrosococcus halophilus Nc4 8916216 YP_003526777.1 CDS Nhal_1229 NC_013960.1 1224262 1225365 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: noc:Noc_1754 DegT/DnrJ/EryC1/StrS aminotransferase; glutamine--scyllo-inositol transaminase 1224262..1225365 Nitrosococcus halophilus Nc4 8916217 YP_003526778.1 CDS Nhal_1230 NC_013960.1 1225355 1226533 D KEGG: noc:Noc_1753 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; lipid-A-disaccharide synthase 1225355..1226533 Nitrosococcus halophilus Nc4 8916218 YP_003526779.1 CDS Nhal_1231 NC_013960.1 1226553 1227335 R KEGG: noc:Noc_1752 UDP-N-acetylglucosamine acyltransferase; TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; PFAM: transferase; acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase complement(1226553..1227335) Nitrosococcus halophilus Nc4 8916219 YP_003526780.1 CDS Nhal_1232 NC_013960.1 1227417 1227776 R KEGG: noc:Noc_1751 hypothetical protein; hypothetical protein complement(1227417..1227776) Nitrosococcus halophilus Nc4 8916220 YP_003526781.1 CDS Nhal_1233 NC_013960.1 1228003 1228794 R PFAM: beta-lactamase; KEGG: noc:Noc_1750 hydroxyacylglutathione hydrolase; hydroxyacylglutathione hydrolase complement(1228003..1228794) Nitrosococcus halophilus Nc4 8916221 YP_003526782.1 CDS Nhal_1234 NC_013960.1 1228798 1229943 R PFAM: IspG family protein; KEGG: noc:Noc_1749 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(1228798..1229943) Nitrosococcus halophilus Nc4 8916222 YP_003526783.1 CDS Nhal_1235 NC_013960.1 1230049 1231065 R KEGG: noc:Noc_1748 hypothetical protein; hypothetical protein complement(1230049..1231065) Nitrosococcus halophilus Nc4 8916223 YP_003526784.1 CDS Nhal_1236 NC_013960.1 1231317 1234025 R TIGRFAM: hopanoid biosynthesis associated RND transporter like protein HpnN; KEGG: noc:Noc_1747 hypothetical protein; hopanoid biosynthesis associated RND transporter like protein HpnN complement(1231317..1234025) Nitrosococcus halophilus Nc4 8916224 YP_003526785.1 CDS Nhal_1237 NC_013960.1 1234052 1234666 R TIGRFAM: hopanoid biosynthesis associated membrane protein HpnM; PFAM: toluene tolerance protein; KEGG: noc:Noc_1746 toluene tolerance; hopanoid biosynthesis associated membrane protein HpnM complement(1234052..1234666) Nitrosococcus halophilus Nc4 8916225 YP_003526786.1 CDS Nhal_1238 NC_013960.1 1234779 1235897 R PFAM: glycosyl transferase family 2; KEGG: avn:Avin_20620 glycosyl transferase, family 2; family 2 glycosyl transferase complement(1234779..1235897) Nitrosococcus halophilus Nc4 8916226 YP_003526787.1 CDS Nhal_1239 NC_013960.1 1235984 1237099 R TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: radical SAM protein; KEGG: noc:Noc_1745 oxidoreductase; hopanoid biosynthesis associated radical SAM protein HpnH complement(1235984..1237099) Nitrosococcus halophilus Nc4 8916227 YP_003526788.1 CDS Nhal_1240 NC_013960.1 1237130 1238092 R KEGG: noc:Noc_1744 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase complement(1237130..1238092) Nitrosococcus halophilus Nc4 8916228 YP_003526789.1 CDS Nhal_1241 NC_013960.1 1238399 1240321 D TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: transketolase; transketolase; KEGG: noc:Noc_1743 1-deoxy-D-xylulose-5-phosphate synthase; deoxyxylulose-5-phosphate synthase 1238399..1240321 Nitrosococcus halophilus Nc4 8916229 YP_003526790.1 CDS Nhal_1242 NC_013960.1 1240406 1240798 D PFAM: copper resistance protein CopC; KEGG: noc:Noc_1742 copper resistance protein CopC; copper resistance protein CopC 1240406..1240798 Nitrosococcus halophilus Nc4 8916230 YP_003526791.1 CDS Nhal_1243 NC_013960.1 1240812 1242455 D PFAM: copper resistance D domain protein; KEGG: noc:Noc_1741 copper resistance D; copper resistance D domain-containing protein 1240812..1242455 Nitrosococcus halophilus Nc4 8916231 YP_003526792.1 CDS Nhal_1244 NC_013960.1 1242468 1244576 D KEGG: noc:Noc_1740 glycogen debranching protein GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; glycogen debranching protein GlgX 1242468..1244576 Nitrosococcus halophilus Nc4 8916232 YP_003526793.1 CDS Nhal_1245 NC_013960.1 1244697 1246994 D KEGG: noc:Noc_1739 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TIGRFAM: 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase; PFAM: methionine synthase vitamin-B12 independent; Cobalamin-independent synthase MetE domain protein; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase 1244697..1246994 Nitrosococcus halophilus Nc4 8916233 YP_003526794.1 CDS Nhal_1246 NC_013960.1 1247212 1248741 D PFAM: radical SAM protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: noc:Noc_1738 cobalamin B12-binding/radical SAM domain-containing Fe-S oxidoreductase; radical SAM protein 1247212..1248741 Nitrosococcus halophilus Nc4 8916234 YP_003526795.1 CDS Nhal_1247 NC_013960.1 1248885 1251134 D PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: scl:sce0363 protein kinase; serine/threonine protein kinase-like protein 1248885..1251134 Nitrosococcus halophilus Nc4 8916235 YP_003526796.1 CDS Nhal_1248 NC_013960.1 1251111 1252478 R KEGG: noc:Noc_1840 divalent cation transporter; TIGRFAM: magnesium transporter; PFAM: MgtE intracellular region; CBS domain containing protein; MgtE integral membrane region; SMART: CBS domain containing protein; magnesium transporter complement(1251111..1252478) Nitrosococcus halophilus Nc4 8916236 YP_003526797.1 CDS Nhal_1249 NC_013960.1 1252503 1252616 D hypothetical protein 1252503..1252616 Nitrosococcus halophilus Nc4 8916237 YP_003526798.1 CDS Nhal_1250 NC_013960.1 1252573 1253385 R PFAM: inositol monophosphatase; KEGG: noc:Noc_1838 inositol monophosphatase; inositol monophosphatase complement(1252573..1253385) Nitrosococcus halophilus Nc4 8916238 YP_003526799.1 CDS Nhal_1251 NC_013960.1 1253401 1254351 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: noc:Noc_1837 LysR family transcriptional regulator; LysR family transcriptional regulator complement(1253401..1254351) Nitrosococcus halophilus Nc4 8916239 YP_003526800.1 CDS Nhal_1252 NC_013960.1 1254518 1255459 D PFAM: SEC-C motif domain protein; KEGG: tgr:Tgr7_2445 hypothetical protein; SEC-C motif domain-containing protein 1254518..1255459 Nitrosococcus halophilus Nc4 8916240 YP_003526801.1 CDS Nhal_1253 NC_013960.1 1255480 1255944 R KEGG: nmu:Nmul_A2143 integral membrane protein; integral membrane protein complement(1255480..1255944) Nitrosococcus halophilus Nc4 8916241 YP_003526802.1 CDS Nhal_1254 NC_013960.1 1255946 1257223 R PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: eba:ebA6861 hypothetical protein; NAD-dependent epimerase/dehydratase complement(1255946..1257223) Nitrosococcus halophilus Nc4 8916242 YP_003526803.1 CDS Nhal_1255 NC_013960.1 1257359 1257799 R KEGG: yen:YE4124 isochorismatase family hydrolase; isochorismatase family hydrolase complement(1257359..1257799) Nitrosococcus halophilus Nc4 8916243 YP_003526804.1 CDS Nhal_1256 NC_013960.1 1258039 1258389 R hypothetical protein complement(1258039..1258389) Nitrosococcus halophilus Nc4 8916244 YP_003526805.1 CDS Nhal_1257 NC_013960.1 1258901 1260700 R PFAM: FG-GAP repeat protein; SMART: Integrin alpha beta-propellor repeat protein; KEGG: noc:Noc_1762 integrins alpha chain; FG-GAP repeat-containing protein complement(1258901..1260700) Nitrosococcus halophilus Nc4 8916245 YP_003526806.1 CDS Nhal_1261 NC_013960.1 1261865 1262083 R PFAM: protein of unknown function UPF0150; KEGG: noc:Noc_1108 hypothetical protein; hypothetical protein complement(1261865..1262083) Nitrosococcus halophilus Nc4 8916249 YP_003526807.1 CDS Nhal_1262 NC_013960.1 1262336 1262548 D KEGG: gme:Gmet_A3569 addiction module toxin, RelE/StbE; hypothetical protein 1262336..1262548 Nitrosococcus halophilus Nc4 8916250 YP_003526808.1 CDS Nhal_1263 NC_013960.1 1262623 1262910 R PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: avn:Avin_04240 transcriptional regulator with fis-type helix-turn-helix motif; hypothetical protein complement(1262623..1262910) Nitrosococcus halophilus Nc4 8916251 YP_003526809.1 CDS Nhal_1265 NC_013960.1 1263490 1263741 R KEGG: tgr:Tgr7_0154 hypothetical protein; hypothetical protein complement(1263490..1263741) Nitrosococcus halophilus Nc4 8916253 YP_003526810.1 CDS Nhal_1266 NC_013960.1 1263734 1264015 R PFAM: protein of unknown function DUF497; KEGG: tgr:Tgr7_0155 hypothetical protein; hypothetical protein complement(1263734..1264015) Nitrosococcus halophilus Nc4 8916254 YP_003526811.1 CDS Nhal_1268 NC_013960.1 1264451 1264660 R KEGG: cbg:CbuG_0274 hypothetical protein; hypothetical protein complement(1264451..1264660) Nitrosococcus halophilus Nc4 8916256 YP_003526812.1 CDS Nhal_1269 NC_013960.1 1264653 1264946 R PFAM: protein of unknown function DUF497; KEGG: ppr:PBPRB0296 hypothetical protein; hypothetical protein complement(1264653..1264946) Nitrosococcus halophilus Nc4 8916257 YP_003526813.1 CDS Nhal_1271 NC_013960.1 1265924 1267015 R KEGG: rpt:Rpal_2694 periplasmic protein-like protein; hypothetical protein complement(1265924..1267015) Nitrosococcus halophilus Nc4 8916259 YP_003526814.1 CDS Nhal_1272 NC_013960.1 1267160 1267432 D TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: noc:Noc_1101 prevent-host-death protein; prevent-host-death family protein 1267160..1267432 Nitrosococcus halophilus Nc4 8916260 YP_003526815.1 CDS Nhal_1273 NC_013960.1 1267413 1267682 D TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: noc:Noc_1100 addiction module toxin, Txe/YoeB; Txe/YoeB family addiction module toxin 1267413..1267682 Nitrosococcus halophilus Nc4 8916261 YP_003526816.1 CDS Nhal_1274 NC_013960.1 1267874 1267969 D hypothetical protein 1267874..1267969 Nitrosococcus halophilus Nc4 8916262 YP_003526817.1 CDS Nhal_1275 NC_013960.1 1268094 1268792 R PFAM: protein of unknown function DUF1568; KEGG: sse:Ssed_3670 transposase and inactivated derivatives; hypothetical protein complement(1268094..1268792) Nitrosococcus halophilus Nc4 8916263 YP_003526818.1 CDS Nhal_1277 NC_013960.1 1269425 1270192 D KEGG: sun:SUN_2374 hypothetical protein; hypothetical protein 1269425..1270192 Nitrosococcus halophilus Nc4 8916265 YP_003526819.1 CDS Nhal_1278 NC_013960.1 1270186 1270470 R KEGG: vfm:VFMJ11_1428 hypothetical protein; hypothetical protein complement(1270186..1270470) Nitrosococcus halophilus Nc4 8916266 YP_003526820.1 CDS Nhal_1279 NC_013960.1 1270954 1271583 R hypothetical protein complement(1270954..1271583) Nitrosococcus halophilus Nc4 8916267 YP_003526821.1 CDS Nhal_1280 NC_013960.1 1271580 1271678 R hypothetical protein complement(1271580..1271678) Nitrosococcus halophilus Nc4 8916268 YP_003526822.1 CDS Nhal_1281 NC_013960.1 1271718 1271945 R hypothetical protein complement(1271718..1271945) Nitrosococcus halophilus Nc4 8916269 YP_003526823.1 CDS Nhal_1282 NC_013960.1 1271949 1272215 R KEGG: ypk:y2190 hypothetical protein; hypothetical protein complement(1271949..1272215) Nitrosococcus halophilus Nc4 8916270 YP_003526824.1 CDS Nhal_1283 NC_013960.1 1272427 1273392 D TIGRFAM: integron integrase; PFAM: integrase family protein; KEGG: tbd:Tbd_1215 integron integrase; integron integrase 1272427..1273392 Nitrosococcus halophilus Nc4 8916271 YP_003526825.1 CDS Nhal_1284 NC_013960.1 1273443 1274594 R PFAM: transposase IS4 family protein; KEGG: pca:Pcar_0986 transposase; transposase IS4 family protein complement(1273443..1274594) Nitrosococcus halophilus Nc4 8916272 YP_003526826.1 CDS Nhal_1287 NC_013960.1 1275402 1275617 D KEGG: noc:Noc_0414 hypothetical protein; hypothetical protein 1275402..1275617 Nitrosococcus halophilus Nc4 8916275 YP_003526827.1 CDS Nhal_1288 NC_013960.1 1275614 1276015 D PFAM: PilT protein domain protein; KEGG: pol:Bpro_4104 PilT protein-like; PilT protein domain-containing protein 1275614..1276015 Nitrosococcus halophilus Nc4 8916276 YP_003526828.1 CDS Nhal_1289 NC_013960.1 1276071 1278209 R KEGG: noc:Noc_1300 RelA/SpoT protein; TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; RelA/SpoT family protein complement(1276071..1278209) Nitrosococcus halophilus Nc4 8916277 YP_003526829.1 CDS Nhal_1290 NC_013960.1 1278228 1282157 R KEGG: noc:Noc_1301 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase-associated domain protein; protein of unknown function DUF1605; helicase; SMART: DEAD-like helicase ; helicase; ATPase AAA; ATP-dependent helicase HrpA complement(1278228..1282157) Nitrosococcus halophilus Nc4 8916278 YP_003526830.1 CDS Nhal_1291 NC_013960.1 1282220 1282420 D hypothetical protein 1282220..1282420 Nitrosococcus halophilus Nc4 8916279 YP_003526831.1 CDS Nhal_1292 NC_013960.1 1282848 1283417 D KEGG: noc:Noc_1302 hypothetical protein; hypothetical protein 1282848..1283417 Nitrosococcus halophilus Nc4 8916280 YP_003526832.1 CDS Nhal_1293 NC_013960.1 1283809 1284057 D hypothetical protein 1283809..1284057 Nitrosococcus halophilus Nc4 8916281 YP_003526833.1 CDS Nhal_1294 NC_013960.1 1284085 1286373 D PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; RNA binding S1 domain protein; KEGG: noc:Noc_1303 RNA binding S1; RNA binding S1 domain-containing protein 1284085..1286373 Nitrosococcus halophilus Nc4 8916282 YP_003526834.1 CDS Nhal_1295 NC_013960.1 1286513 1286785 R KEGG: noc:Noc_1304 hypothetical protein; hypothetical protein complement(1286513..1286785) Nitrosococcus halophilus Nc4 8916283 YP_003526835.1 CDS Nhal_1296 NC_013960.1 1287171 1289024 D TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: FAD-binding domain protein; flavodoxin/nitric oxide synthase; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: noc:Noc_1305 sulphite reductase (NADPH) flavoprotein, alpha chain; sulfite reductase (NADPH) flavoprotein subunit alpha 1287171..1289024 Nitrosococcus halophilus Nc4 8916284 YP_003526836.1 CDS Nhal_1297 NC_013960.1 1289038 1290777 D KEGG: noc:Noc_1306 sulfite reductase subunit beta; TIGRFAM: sulfite reductase (NADPH) hemoprotein, beta-component; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; sulfite reductase (NADPH) hemoprotein, beta-component 1289038..1290777 Nitrosococcus halophilus Nc4 8916285 YP_003526837.1 CDS Nhal_1298 NC_013960.1 1290864 1291502 D PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: noc:Noc_1307 peroxidase; Peroxidase 1290864..1291502 Nitrosococcus halophilus Nc4 8916286 YP_003526838.1 CDS Nhal_1299 NC_013960.1 1291829 1292416 D hypothetical protein 1291829..1292416 Nitrosococcus halophilus Nc4 8916287 YP_003526839.1 CDS Nhal_1300 NC_013960.1 1292435 1292977 D PFAM: cytochrome B561; KEGG: bph:Bphy_6508 cytochrome b561; cytochrome B561 1292435..1292977 Nitrosococcus halophilus Nc4 8916288 YP_003526840.1 CDS Nhal_1301 NC_013960.1 1292984 1293808 R PFAM: peptidase M48 Ste24p; KEGG: noc:Noc_1308 peptidase M48, Ste24p; peptidase M48 Ste24p complement(1292984..1293808) Nitrosococcus halophilus Nc4 8916289 YP_003526841.1 CDS Nhal_1302 NC_013960.1 1294026 1296677 R TIGRFAM: aminopeptidase N; PFAM: peptidase M1 membrane alanine aminopeptidase; KEGG: noc:Noc_1314 peptidase M, neutral zinc metallopeptidase, zinc-binding site; aminopeptidase N complement(1294026..1296677) Nitrosococcus halophilus Nc4 8916290 YP_003526842.1 CDS Nhal_1303 NC_013960.1 1296801 1297076 R PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: nis:NIS_0278 RNA-binding protein RNP-1; RNP-1 like RNA-binding protein complement(1296801..1297076) Nitrosococcus halophilus Nc4 8916291 YP_003526843.1 CDS Nhal_1304 NC_013960.1 1297354 1298430 R TIGRFAM: 2-aminoethylphosphonate aminotransferase; PFAM: aminotransferase class V; KEGG: noc:Noc_1315 aminotransferase, class V; 2-aminoethylphosphonate aminotransferase complement(1297354..1298430) Nitrosococcus halophilus Nc4 8916292 YP_003526844.1 CDS Nhal_1305 NC_013960.1 1298427 1299578 R TIGRFAM: phosphonopyruvate decarboxylase; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: noc:Noc_1316 thiamine pyrophosphate enzyme; phosphonopyruvate decarboxylase complement(1298427..1299578) Nitrosococcus halophilus Nc4 8916293 YP_003526845.1 CDS Nhal_1306 NC_013960.1 1299575 1301248 R TIGRFAM: phosphoenolpyruvate phosphomutase; KEGG: noc:Noc_1317 phosphoenolpyruvate phosphomutase; phosphoenolpyruvate phosphomutase complement(1299575..1301248) Nitrosococcus halophilus Nc4 8916294 YP_003526846.1 CDS Nhal_1307 NC_013960.1 1301293 1302054 R KEGG: noc:Noc_1318 hypothetical protein; hypothetical protein complement(1301293..1302054) Nitrosococcus halophilus Nc4 8916295 YP_003526847.1 CDS Nhal_1308 NC_013960.1 1302059 1302787 R TIGRFAM: hopanoid-associated phosphorylase; PFAM: purine or other phosphorylase family 1; KEGG: noc:Noc_1319 purine phosphorylase family protein 1; hopanoid-associated phosphorylase complement(1302059..1302787) Nitrosococcus halophilus Nc4 8916296 YP_003526848.1 CDS Nhal_1309 NC_013960.1 1302823 1304802 R KEGG: noc:Noc_1320 terpene synthase/squalene cyclase; TIGRFAM: squalene-hopene cyclase; squalene/oxidosqualene cyclase; PFAM: prenyltransferase/squalene oxidase; squalene-hopene cyclase complement(1302823..1304802) Nitrosococcus halophilus Nc4 8916297 YP_003526849.1 CDS Nhal_1310 NC_013960.1 1304836 1305936 R PFAM: Squalene/phytoene synthase; KEGG: noc:Noc_1321 squalene/phytoene synthase; Squalene/phytoene synthase complement(1304836..1305936) Nitrosococcus halophilus Nc4 8916298 YP_003526850.1 CDS Nhal_1311 NC_013960.1 1306111 1306971 D KEGG: noc:Noc_1323 hypothetical protein; hypothetical protein 1306111..1306971 Nitrosococcus halophilus Nc4 8916299 YP_003526851.1 CDS Nhal_1312 NC_013960.1 1307671 1308282 D PFAM: response regulator receiver; ANTAR domain protein; SMART: response regulator receiver; KEGG: noc:Noc_1494 response regulator; response regulator receiver 1307671..1308282 Nitrosococcus halophilus Nc4 8916300 YP_003526852.1 CDS Nhal_1313 NC_013960.1 1308269 1309861 D TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; KEGG: noc:Noc_1495 PAS sensor signal transduction histidine kinase; PAS sensor protein 1308269..1309861 Nitrosococcus halophilus Nc4 8916301 YP_003526853.1 CDS Nhal_1314 NC_013960.1 1310422 1311240 D PFAM: PHP domain protein; KEGG: noc:Noc_1496 capsular polysaccharide biosynthesis protein; protein-tyrosine-phosphatase 1310422..1311240 Nitrosococcus halophilus Nc4 8916302 YP_003526854.1 CDS Nhal_1315 NC_013960.1 1311332 1313605 D KEGG: noc:Noc_1497 protein-tyrosine kinase; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; capsular exopolysaccharide family protein 1311332..1313605 Nitrosococcus halophilus Nc4 8916303 YP_003526855.1 CDS Nhal_1316 NC_013960.1 1313631 1314905 D KEGG: noc:Noc_1499 hypothetical protein; hypothetical protein 1313631..1314905 Nitrosococcus halophilus Nc4 8916304 YP_003526856.1 CDS Nhal_1317 NC_013960.1 1315038 1315274 R hypothetical protein complement(1315038..1315274) Nitrosococcus halophilus Nc4 8916305 YP_003526857.1 CDS Nhal_1318 NC_013960.1 1315280 1315396 R hypothetical protein complement(1315280..1315396) Nitrosococcus halophilus Nc4 8916306 YP_003526858.1 CDS Nhal_1319 NC_013960.1 1315433 1316962 D KEGG: noc:Noc_1503 binding-protein-dependent transport system protein; binding-protein-dependent transporter protein 1315433..1316962 Nitrosococcus halophilus Nc4 8916307 YP_003526859.1 CDS Nhal_1320 NC_013960.1 1317165 1317722 D KEGG: ccv:CCV52592_0245 phosphoheptose isomerase; phosphoheptose isomerase 1317165..1317722 Nitrosococcus halophilus Nc4 8916308 YP_003526860.1 CDS Nhal_1321 NC_013960.1 1317725 1319176 D TIGRFAM: rfaE bifunctional protein; cytidyltransferase-related domain protein; PFAM: PfkB domain protein; cytidylyltransferase; KEGG: aeh:Mlg_2810 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; rfaE bifunctional protein 1317725..1319176 Nitrosococcus halophilus Nc4 8916309 YP_003526861.1 CDS Nhal_1322 NC_013960.1 1319173 1319298 D hypothetical protein 1319173..1319298 Nitrosococcus halophilus Nc4 8916310 YP_003526862.1 CDS Nhal_1323 NC_013960.1 1319349 1320731 D PFAM: polysaccharide biosynthesis protein; KEGG: abo:ABO_0915 polysaccharide export protein, translocase; polysaccharide biosynthesis protein 1319349..1320731 Nitrosococcus halophilus Nc4 8916311 YP_003526863.1 CDS Nhal_1324 NC_013960.1 1320906 1321811 D PFAM: sulfotransferase; KEGG: afr:AFE_1817 sulfotransferase domain protein; sulfotransferase 1320906..1321811 Nitrosococcus halophilus Nc4 8916312 YP_003526864.1 CDS Nhal_1325 NC_013960.1 1321823 1322704 D PFAM: sulfotransferase; KEGG: afr:AFE_1817 sulfotransferase domain protein; sulfotransferase 1321823..1322704 Nitrosococcus halophilus Nc4 8916313 YP_003526865.1 CDS Nhal_1326 NC_013960.1 1323091 1324494 D KEGG: tcx:Tcr_1683 hypothetical protein; hypothetical protein 1323091..1324494 Nitrosococcus halophilus Nc4 8916314 YP_003526866.1 CDS Nhal_1327 NC_013960.1 1324582 1325685 D PFAM: glycosyl transferase family 9; KEGG: msl:Msil_0987 glycosyl transferase family 9; glycosyl transferase family protein 1324582..1325685 Nitrosococcus halophilus Nc4 8916315 YP_003526867.1 CDS Nhal_1328 NC_013960.1 1325682 1326926 D PFAM: glycosyl transferase group 1; KEGG: gur:Gura_1688 glycosyl transferase, group 1; group 1 glycosyl transferase 1325682..1326926 Nitrosococcus halophilus Nc4 8916316 YP_003526868.1 CDS Nhal_1329 NC_013960.1 1326964 1329138 D SMART: Parallel beta-helix repeat; KEGG: hypothetical protein; hypothetical protein 1326964..1329138 Nitrosococcus halophilus Nc4 8916317 YP_003526869.1 CDS Nhal_1330 NC_013960.1 1329152 1330021 D PFAM: sulfotransferase; KEGG: pat:Patl_1180 sulfotransferase; sulfotransferase 1329152..1330021 Nitrosococcus halophilus Nc4 8916318 YP_003526870.1 CDS Nhal_1331 NC_013960.1 1330112 1331236 D TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: noc:Noc_1523 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase 1330112..1331236 Nitrosococcus halophilus Nc4 8916319 YP_003526871.1 CDS Nhal_1332 NC_013960.1 1331342 1332568 D KEGG: sat:SYN_01144 glycosyltransferase; hypothetical protein 1331342..1332568 Nitrosococcus halophilus Nc4 8916320 YP_003526872.1 CDS Nhal_1333 NC_013960.1 1332710 1333633 D PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: dvu:DVU0090 GDP-fucose synthetase; NAD-dependent epimerase/dehydratase 1332710..1333633 Nitrosococcus halophilus Nc4 8916321 YP_003526873.1 CDS Nhal_1334 NC_013960.1 1333766 1333870 D hypothetical protein 1333766..1333870 Nitrosococcus halophilus Nc4 8916322 YP_003526874.1 CDS Nhal_1335 NC_013960.1 1334066 1334890 D PFAM: polysaccharide export protein; KEGG: noc:Noc_1525 polysaccharide export protein; polysaccharide export protein 1334066..1334890 Nitrosococcus halophilus Nc4 8916323 YP_003526875.1 CDS Nhal_1336 NC_013960.1 1335052 1336566 D KEGG: tau:Tola_2044 undecaprenyl-phosphate galactose phosphotransferase, WbaP; TIGRFAM: undecaprenyl-phosphate galactose phosphotransferase, WbaP; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; UDP-phosphate galactose phosphotransferase 1335052..1336566 Nitrosococcus halophilus Nc4 8916324 YP_003526876.1 CDS Nhal_1338 NC_013960.1 1337457 1339178 D PFAM: glucose-methanol-choline oxidoreductase; KEGG: mxa:MXAN_3822 hypothetical protein; glucose-methanol-choline oxidoreductase 1337457..1339178 Nitrosococcus halophilus Nc4 8916326 YP_003526877.1 CDS Nhal_1339 NC_013960.1 1339355 1341841 D KEGG: noc:Noc_1802 hypothetical protein; hypothetical protein 1339355..1341841 Nitrosococcus halophilus Nc4 8916327 YP_003526878.1 CDS Nhal_1340 NC_013960.1 1342493 1344658 D KEGG: noc:Noc_1800 hypothetical protein; hypothetical protein 1342493..1344658 Nitrosococcus halophilus Nc4 8916328 YP_003526879.1 CDS Nhal_1341 NC_013960.1 1344672 1345997 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: noc:Noc_1799 NADH-flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase 1344672..1345997 Nitrosococcus halophilus Nc4 8916329 YP_003526880.1 CDS Nhal_1342 NC_013960.1 1346059 1346226 D hypothetical protein 1346059..1346226 Nitrosococcus halophilus Nc4 8916330 YP_003526881.1 CDS Nhal_1343 NC_013960.1 1346251 1347771 D KEGG: noc:Noc_1798 hypothetical protein; hypothetical protein 1346251..1347771 Nitrosococcus halophilus Nc4 8916331 YP_003526882.1 CDS Nhal_1344 NC_013960.1 1347816 1349339 D KEGG: noc:Noc_1797 hypothetical protein; hypothetical protein 1347816..1349339 Nitrosococcus halophilus Nc4 8916332 YP_003526883.1 CDS Nhal_1345 NC_013960.1 1349357 1351387 D KEGG: noc:Noc_1795 hypothetical protein; hypothetical protein 1349357..1351387 Nitrosococcus halophilus Nc4 8916333 YP_003526884.1 CDS Nhal_1346 NC_013960.1 1351428 1353131 D KEGG: bte:BTH_I2354 hypothetical protein; hypothetical protein 1351428..1353131 Nitrosococcus halophilus Nc4 8916334 YP_003526885.1 CDS Nhal_1347 NC_013960.1 1353128 1354705 D PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: lch:Lcho_3191 cholesterol oxidase; glucose-methanol-choline oxidoreductase 1353128..1354705 Nitrosococcus halophilus Nc4 8916335 YP_003526886.1 CDS Nhal_1348 NC_013960.1 1355168 1356577 D KEGG: noc:Noc_1791 hypothetical protein; hypothetical protein 1355168..1356577 Nitrosococcus halophilus Nc4 8916336 YP_003526887.1 CDS Nhal_1349 NC_013960.1 1356624 1357010 D KEGG: noc:Noc_1790 hypothetical protein; hypothetical protein 1356624..1357010 Nitrosococcus halophilus Nc4 8916337 YP_003526888.1 CDS Nhal_1350 NC_013960.1 1357109 1358158 D PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: aeh:Mlg_2089 fructose-bisphosphate aldolase; fructose-bisphosphate aldolase 1357109..1358158 Nitrosococcus halophilus Nc4 8916338 YP_003526889.1 CDS Nhal_1351 NC_013960.1 1358420 1360765 D TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase; zinc finger HypF domain protein; KEGG: reh:PHG072 HypF3; (NiFe) hydrogenase maturation protein HypF 1358420..1360765 Nitrosococcus halophilus Nc4 8916339 YP_003526890.1 CDS Nhal_1352 NC_013960.1 1360978 1363317 R PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; KEGG: noc:Noc_1582 malic enzyme; malate dehydrogenase complement(1360978..1363317) Nitrosococcus halophilus Nc4 8916340 YP_003526891.1 CDS Nhal_1353 NC_013960.1 1363478 1364233 D PFAM: phytanoyl-CoA dioxygenase; KEGG: noc:Noc_1391 phytanoyl-CoA dioxygenase; phytanoyl-CoA dioxygenase 1363478..1364233 Nitrosococcus halophilus Nc4 8916341 YP_003526892.1 CDS Nhal_1354 NC_013960.1 1364514 1365653 D PFAM: patatin; KEGG: noc:Noc_1392 patatin; patatin 1364514..1365653 Nitrosococcus halophilus Nc4 8916342 YP_003526893.1 CDS Nhal_1355 NC_013960.1 1366172 1366513 D TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: avn:Avin_50490 hydrogenase nickel incorporation protein HypA; hydrogenase nickel insertion protein HypA 1366172..1366513 Nitrosococcus halophilus Nc4 8916343 YP_003526894.1 CDS Nhal_1356 NC_013960.1 1366513 1367367 D TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: avn:Avin_50480 hydrogenase nickel incorporation protein HypB; hydrogenase accessory protein HypB 1366513..1367367 Nitrosococcus halophilus Nc4 8916344 YP_003526895.1 CDS Nhal_1357 NC_013960.1 1367429 1367725 D TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: reh:PHG073 HypC2; hydrogenase assembly chaperone hypC/hupF 1367429..1367725 Nitrosococcus halophilus Nc4 8916345 YP_003526896.1 CDS Nhal_1358 NC_013960.1 1367718 1368413 D PFAM: sugar isomerase (SIS); KEGG: reh:PHG074 sedoheptulose 7-phosphate isomerase; sugar isomerase (SIS) 1367718..1368413 Nitrosococcus halophilus Nc4 8916346 YP_003526897.1 CDS Nhal_1359 NC_013960.1 1368410 1369564 D TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: bbt:BBta_0474 hydrogenase expression/formation; hydrogenase expression/formation protein HypD 1368410..1369564 Nitrosococcus halophilus Nc4 8916347 YP_003526898.1 CDS Nhal_1360 NC_013960.1 1369568 1370605 D TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; KEGG: bxe:Bxe_C0538 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE 1369568..1370605 Nitrosococcus halophilus Nc4 8916348 YP_003526899.1 CDS Nhal_1361 NC_013960.1 1370624 1371232 R KEGG: pin:Ping_2907 hypothetical protein; hypothetical protein complement(1370624..1371232) Nitrosococcus halophilus Nc4 8916349 YP_003526900.1 CDS Nhal_1362 NC_013960.1 1371462 1372142 D PFAM: Resolvase domain; MerR family transcriptional regulator; KEGG: afr:AFE_1304 transposon, resolvase; resolvase 1371462..1372142 Nitrosococcus halophilus Nc4 8916350 YP_003526901.1 CDS Nhal_1363 NC_013960.1 1372213 1373115 D TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; KEGG: AGL264Wp; transposase, IS605 OrfB family 1372213..1373115 Nitrosococcus halophilus Nc4 8916351 YP_003526902.1 CDS Nhal_1364 NC_013960.1 1373154 1373888 D KEGG: noc:Noc_1395 phosphoglycerate mutase 1; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: phosphoglycerate mutase; phosphoglycerate mutase 1 family 1373154..1373888 Nitrosococcus halophilus Nc4 8916352 YP_003526903.1 CDS Nhal_1365 NC_013960.1 1373956 1374546 R PFAM: protein of unknown function DUF820; KEGG: noc:Noc_0762 hypothetical protein; hypothetical protein complement(1373956..1374546) Nitrosococcus halophilus Nc4 8916353 YP_003526904.1 CDS Nhal_1366 NC_013960.1 1374802 1378302 D KEGG: noc:Noc_1583 hypothetical protein; hypothetical protein 1374802..1378302 Nitrosococcus halophilus Nc4 8916354 YP_003526905.1 CDS Nhal_1367 NC_013960.1 1378620 1380401 D PFAM: sodium/calcium exchanger membrane region; KEGG: csa:Csal_1499 sodium/calcium exchanger membrane region; sodium/calcium exchanger membrane protein 1378620..1380401 Nitrosococcus halophilus Nc4 8916355 YP_003526906.1 CDS Nhal_1368 NC_013960.1 1380415 1381185 R KEGG: noc:Noc_1584 hypothetical protein; hypothetical protein complement(1380415..1381185) Nitrosococcus halophilus Nc4 8916356 YP_003526907.1 CDS Nhal_1369 NC_013960.1 1381313 1382959 D PFAM: DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS; AAA ATPase; KEGG: noc:Noc_1585 DNA mismatch repair protein MutS-like; DNA mismatch repair protein MutS 1381313..1382959 Nitrosococcus halophilus Nc4 8916357 YP_003526908.1 CDS Nhal_1370 NC_013960.1 1383044 1383709 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: noc:Noc_1586 flavodoxin reductase (ferredoxin-NADPH reductase) family protein 1; oxidoreductase FAD/NAD(P)-binding domain-containing protein complement(1383044..1383709) Nitrosococcus halophilus Nc4 8916358 YP_003526909.1 CDS Nhal_1371 NC_013960.1 1383864 1385039 D KEGG: cti:RALTA_A0032 hippurate hydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 1383864..1385039 Nitrosococcus halophilus Nc4 8916359 YP_003526910.1 CDS Nhal_1372 NC_013960.1 1385023 1386162 D PFAM: glutamate--cysteine ligase; KEGG: bba:Bd2263 hypothetical protein; glutamate--cysteine ligase 1385023..1386162 Nitrosococcus halophilus Nc4 8916360 YP_003526911.1 CDS Nhal_1373 NC_013960.1 1386434 1386676 D hypothetical protein 1386434..1386676 Nitrosococcus halophilus Nc4 8916361 YP_003526912.1 CDS Nhal_1374 NC_013960.1 1386800 1388617 D PFAM: protein of unknown function DUF885; KEGG: noc:Noc_1385 hypothetical protein; hypothetical protein 1386800..1388617 Nitrosococcus halophilus Nc4 8916362 YP_003526913.1 CDS Nhal_1375 NC_013960.1 1388858 1389424 R KEGG: noc:Noc_1386 hypothetical protein; hypothetical protein complement(1388858..1389424) Nitrosococcus halophilus Nc4 8916363 YP_003526914.1 CDS Nhal_1376 NC_013960.1 1389630 1389884 D hypothetical protein 1389630..1389884 Nitrosococcus halophilus Nc4 8916364 YP_003526915.1 CDS Nhal_1377 NC_013960.1 1389862 1390863 R KEGG: eba:ebA3601 hypothetical protein; hypothetical protein complement(1389862..1390863) Nitrosococcus halophilus Nc4 8916365 YP_003526916.1 CDS Nhal_1378 NC_013960.1 1390860 1391627 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_4767 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1390860..1391627) Nitrosococcus halophilus Nc4 8916366 YP_003526917.1 CDS Nhal_1379 NC_013960.1 1391659 1393998 R KEGG: noc:Noc_1387 peptidase S16, ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: ATPase AAA central domain protein; peptidase S16; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16; AAA ATPase; ATP-dependent protease La complement(1391659..1393998) Nitrosococcus halophilus Nc4 8916367 YP_003526918.1 CDS Nhal_1380 NC_013960.1 1394000 1394368 R PFAM: heat shock protein Hsp20; KEGG: noc:Noc_1388 heat shock protein HSP20; heat shock protein Hsp20 complement(1394000..1394368) Nitrosococcus halophilus Nc4 8916368 YP_003526919.1 CDS Nhal_1381 NC_013960.1 1394468 1395250 R PFAM: glutamine amidotransferase class-II; KEGG: noc:Noc_1389 glutamine amidotransferase, class-II; glutamine amidotransferase class-II complement(1394468..1395250) Nitrosococcus halophilus Nc4 8916369 YP_003526920.1 CDS Nhal_1382 NC_013960.1 1395403 1396044 D KEGG: noc:Noc_1390 GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I; GTP cyclohydrolase I 1395403..1396044 Nitrosococcus halophilus Nc4 8916370 YP_003526921.1 CDS Nhal_1383 NC_013960.1 1396082 1396246 R KEGG: mfa:Mfla_0130 phosphate uptake regulator, PhoU; hypothetical protein complement(1396082..1396246) Nitrosococcus halophilus Nc4 8916371 YP_003526922.1 CDS Nhal_1384 NC_013960.1 1396410 1396586 R hypothetical protein complement(1396410..1396586) Nitrosococcus halophilus Nc4 8916372 YP_003526923.1 CDS Nhal_1385 NC_013960.1 1396788 1397081 D KEGG: nmu:Nmul_A0035 hypothetical protein; hypothetical protein 1396788..1397081 Nitrosococcus halophilus Nc4 8916373 YP_003526924.1 CDS Nhal_1386 NC_013960.1 1397228 1397545 D KEGG: nmu:Nmul_A0032 hypothetical protein; hypothetical protein 1397228..1397545 Nitrosococcus halophilus Nc4 8916374 YP_003526925.1 CDS Nhal_1387 NC_013960.1 1397542 1398018 D KEGG: mca:MCA1087 hypothetical protein; hypothetical protein 1397542..1398018 Nitrosococcus halophilus Nc4 8916375 YP_003526926.1 CDS Nhal_1388 NC_013960.1 1398196 1398897 D KEGG: nmu:Nmul_A0034 hypothetical protein; hypothetical protein 1398196..1398897 Nitrosococcus halophilus Nc4 8916376 YP_003526927.1 CDS Nhal_1389 NC_013960.1 1399137 1399535 D KEGG: nmu:Nmul_A0035 hypothetical protein; hypothetical protein 1399137..1399535 Nitrosococcus halophilus Nc4 8916377 YP_003526928.1 CDS Nhal_1390 NC_013960.1 1399673 1400845 R PFAM: monooxygenase FAD-binding; KEGG: mmw:Mmwyl1_3720 FAD dependent oxidoreductase; monooxygenase FAD-binding protein complement(1399673..1400845) Nitrosococcus halophilus Nc4 8916378 YP_003526929.1 CDS Nhal_1391 NC_013960.1 1400845 1402896 R KEGG: mmw:Mmwyl1_3721 hypothetical protein; hypothetical protein complement(1400845..1402896) Nitrosococcus halophilus Nc4 8916379 YP_003526930.1 CDS Nhal_1392 NC_013960.1 1402922 1403086 R hypothetical protein complement(1402922..1403086) Nitrosococcus halophilus Nc4 8916380 YP_003526931.1 CDS Nhal_1393 NC_013960.1 1403061 1404344 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pna:Pnap_4334 HNH endonuclease; HNH endonuclease complement(1403061..1404344) Nitrosococcus halophilus Nc4 8916381 YP_003526932.1 CDS Nhal_1394 NC_013960.1 1405046 1405453 D hypothetical protein 1405046..1405453 Nitrosococcus halophilus Nc4 8916382 YP_003526933.1 CDS Nhal_1395 NC_013960.1 1405459 1405812 D hypothetical protein 1405459..1405812 Nitrosococcus halophilus Nc4 8916383 YP_003526934.1 CDS Nhal_1396 NC_013960.1 1405973 1407160 R KEGG: nmu:Nmul_A0036 S-adenosylmethionine synthetase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; S-adenosylmethionine synthetase complement(1405973..1407160) Nitrosococcus halophilus Nc4 8916384 YP_003526935.1 CDS Nhal_1397 NC_013960.1 1407165 1410413 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: nmu:Nmul_A0037 ATPase, E1-E2 type; ATPase P complement(1407165..1410413) Nitrosococcus halophilus Nc4 8916385 YP_003526936.1 CDS Nhal_1398 NC_013960.1 1410712 1411374 R PFAM: O-methyltransferase family 3; KEGG: noc:Noc_1264 O-methyltransferase family protein; O-methyltransferase family 3 complement(1410712..1411374) Nitrosococcus halophilus Nc4 8916386 YP_003526937.1 CDS Nhal_1399 NC_013960.1 1411486 1412289 R TIGRFAM: phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase type-1; KEGG: noc:Noc_1265 phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase complement(1411486..1412289) Nitrosococcus halophilus Nc4 8916387 YP_003526938.1 CDS Nhal_1400 NC_013960.1 1412470 1413921 D PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; thiamineS protein; rhodanese; SMART: Rhodanese domain protein; KEGG: aeh:Mlg_1160 molybdopterin biosynthesis protein MoeB; UBA/THIF-type NAD/FAD binding protein 1412470..1413921 Nitrosococcus halophilus Nc4 8916388 YP_003526939.1 CDS Nhal_1401 NC_013960.1 1414327 1416147 D PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; KEGG: noc:Noc_1266 acetolactate synthase large subunit; thiamine pyrophosphate TPP binding domain-containing protein 1414327..1416147 Nitrosococcus halophilus Nc4 8916389 YP_003526940.1 CDS Nhal_1402 NC_013960.1 1416144 1416944 D KEGG: noc:Noc_1267 hypothetical protein; hypothetical protein 1416144..1416944 Nitrosococcus halophilus Nc4 8916390 YP_003526941.1 CDS Nhal_1403 NC_013960.1 1417004 1417837 D KEGG: noc:Noc_1268 hypothetical protein; hypothetical protein 1417004..1417837 Nitrosococcus halophilus Nc4 8916391 YP_003526942.1 CDS Nhal_1404 NC_013960.1 1418011 1420137 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: noc:Noc_1269 TonB-dependent receptor; TonB-dependent receptor 1418011..1420137 Nitrosococcus halophilus Nc4 8916392 YP_003526943.1 CDS Nhal_1405 NC_013960.1 1420167 1420886 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cps:CPS_1680 short chain dehydrogenase/reductase family oxidoreductase; short-chain dehydrogenase/reductase SDR 1420167..1420886 Nitrosococcus halophilus Nc4 8916393 YP_003526944.1 CDS Nhal_1406 NC_013960.1 1421085 1421969 D KEGG: noc:Noc_1270 hypothetical protein; hypothetical protein 1421085..1421969 Nitrosococcus halophilus Nc4 8916394 YP_003526945.1 CDS Nhal_1407 NC_013960.1 1421979 1426478 D KEGG: noc:Noc_1271 hybrid signal transduction histidine kinase and diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; Hpt domain protein; GGDEF domain containing protein; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: EAL domain protein; GGDEF domain containing protein; Hpt domain protein; histidine kinase A domain protein; response regulator receiver; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; diguanylate cyclase 1421979..1426478 Nitrosococcus halophilus Nc4 8916395 YP_003526946.1 CDS Nhal_1408 NC_013960.1 1427062 1429614 R PFAM: protein of unknown function DUF214; KEGG: noc:Noc_1272 hypothetical protein; hypothetical protein complement(1427062..1429614) Nitrosococcus halophilus Nc4 8916396 YP_003526947.1 CDS Nhal_1409 NC_013960.1 1429611 1430300 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_1273 ABC transporter ATPase; ABC transporter complement(1429611..1430300) Nitrosococcus halophilus Nc4 8916397 YP_003526948.1 CDS Nhal_1410 NC_013960.1 1430438 1430905 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: cbc:CbuK_1233 cytidine/deoxycytidylate deaminase family protein; guanine deaminase 1430438..1430905 Nitrosococcus halophilus Nc4 8916398 YP_003526949.1 CDS Nhal_1411 NC_013960.1 1430927 1433836 D PFAM: FAD linked oxidase; KEGG: noc:Noc_1924 FAD linked oxidase-like; FAD linked oxidase 1430927..1433836 Nitrosococcus halophilus Nc4 8916399 YP_003526950.1 CDS Nhal_1412 NC_013960.1 1433880 1434560 D PFAM: hypothetical protein; KEGG: noc:Noc_1923 abortive infection protein; hypothetical protein 1433880..1434560 Nitrosococcus halophilus Nc4 8916400 YP_003526951.1 CDS Nhal_1413 NC_013960.1 1434943 1435302 R KEGG: mca:MCA0795 hypothetical protein; hypothetical protein complement(1434943..1435302) Nitrosococcus halophilus Nc4 8916401 YP_003526952.1 CDS Nhal_1414 NC_013960.1 1435315 1436229 R PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: sse:Ssed_2363 hypothetical protein; hypothetical protein complement(1435315..1436229) Nitrosococcus halophilus Nc4 8916402 YP_003526953.1 CDS Nhal_1415 NC_013960.1 1436484 1437338 D PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: gur:Gura_3104 response regulator receiver protein; AraC family transcriptional regulator 1436484..1437338 Nitrosococcus halophilus Nc4 8916403 YP_003526954.1 CDS Nhal_1416 NC_013960.1 1437519 1437707 D KEGG: vvy:VV2665 hypothetical protein; hypothetical protein 1437519..1437707 Nitrosococcus halophilus Nc4 8916404 YP_003526955.1 CDS Nhal_1417 NC_013960.1 1437800 1438327 D PFAM: peptidase A24A prepilin type IV; KEGG: dvl:Dvul_1114 peptidase A24A, prepilin type IV; peptidase A24A prepilin type IV 1437800..1438327 Nitrosococcus halophilus Nc4 8916405 YP_003526956.1 CDS Nhal_1418 NC_013960.1 1438354 1439694 D SMART: ATPase AAA; KEGG: sse:Ssed_2373 hypothetical protein; ATPase AAA 1438354..1439694 Nitrosococcus halophilus Nc4 8916406 YP_003526957.1 CDS Nhal_1419 NC_013960.1 1439745 1440542 D TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: vsp:VS_2444 Flp pilus assembly protein CpaB; Flp pilus assembly protein CpaB 1439745..1440542 Nitrosococcus halophilus Nc4 8916407 YP_003526958.1 CDS Nhal_1420 NC_013960.1 1440668 1442365 D PFAM: type II and III secretion system protein; transport-associated; KEGG: swp:swp_2657 Flp pilus assembly protein; type II and III secretion system protein 1440668..1442365 Nitrosococcus halophilus Nc4 8916408 YP_003526959.1 CDS Nhal_1421 NC_013960.1 1442379 1442675 D KEGG: pol:Bpro_2550 hypothetical protein; hypothetical protein 1442379..1442675 Nitrosococcus halophilus Nc4 8916409 YP_003526960.1 CDS Nhal_1422 NC_013960.1 1442710 1443906 D KEGG: vvy:VV2658 hypothetical protein; hypothetical protein 1442710..1443906 Nitrosococcus halophilus Nc4 8916410 YP_003526961.1 CDS Nhal_1423 NC_013960.1 1443910 1444377 D PFAM: TadE family protein; KEGG: ppr:PBPRB0606 hypothetical protein; TadE family protein 1443910..1444377 Nitrosococcus halophilus Nc4 8916411 YP_003526962.1 CDS Nhal_1424 NC_013960.1 1444496 1444966 D PFAM: TadE family protein; KEGG: sse:Ssed_2368 hypothetical protein; TadE family protein 1444496..1444966 Nitrosococcus halophilus Nc4 8916412 YP_003526963.1 CDS Nhal_1425 NC_013960.1 1445100 1446287 D KEGG: vsp:VS_2438 Flp pilus assembly protein; Flp pilus assembly protein ATPase CpaE-like protein 1445100..1446287 Nitrosococcus halophilus Nc4 8916413 YP_003526964.1 CDS Nhal_1426 NC_013960.1 1446307 1447686 D PFAM: type II secretion system protein E; KEGG: ppr:PBPRB0603 pilus assembly protein; type II secretion system protein E 1446307..1447686 Nitrosococcus halophilus Nc4 8916414 YP_003526965.1 CDS Nhal_1427 NC_013960.1 1447707 1448678 D PFAM: type II secretion system protein; KEGG: sse:Ssed_2365 Flp pilus assembly protein TadB; type II secretion system protein 1447707..1448678 Nitrosococcus halophilus Nc4 8916415 YP_003526966.1 CDS Nhal_1428 NC_013960.1 1448689 1449651 D PFAM: type II secretion system protein; KEGG: swp:swp_2653 tight adherence TadC-like transmembrane protein; type II secretion system protein 1448689..1449651 Nitrosococcus halophilus Nc4 8916416 YP_003526967.1 CDS Nhal_1429 NC_013960.1 1450027 1451190 R hypothetical protein complement(1450027..1451190) Nitrosococcus halophilus Nc4 8916417 YP_003526968.1 CDS Nhal_1430 NC_013960.1 1451955 1453193 D TIGRFAM: ornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: noc:Noc_1711 ornithine aminotransferase; ornithine aminotransferase 1451955..1453193 Nitrosococcus halophilus Nc4 8916418 YP_003526969.1 CDS Nhal_1431 NC_013960.1 1453190 1454731 D PFAM: aldehyde dehydrogenase; KEGG: noc:Noc_1710 aldehyde dehydrogenase; aldehyde dehydrogenase 1453190..1454731 Nitrosococcus halophilus Nc4 8916419 YP_003526970.1 CDS Nhal_1432 NC_013960.1 1454749 1455855 D PFAM: indoleamine 23-dioxygenase; KEGG: noc:Noc_1709 indoleamine-pyrrole 2,3-dioxygenase; indoleamine 2,3-dioxygenase 1454749..1455855 Nitrosococcus halophilus Nc4 8916420 YP_003526971.1 CDS Nhal_1433 NC_013960.1 1455871 1456404 D SMART: Water stress and Hypersensitive response domain protein; KEGG: noc:Noc_1708 hypothetical protein; Water stress and Hypersensitive response domain-containing protein 1455871..1456404 Nitrosococcus halophilus Nc4 8916421 YP_003526972.1 CDS Nhal_1434 NC_013960.1 1456517 1456729 D PFAM: protein of unknown function DUF1458; KEGG: noc:Noc_1707 hypothetical protein; hypothetical protein 1456517..1456729 Nitrosococcus halophilus Nc4 8916422 YP_003526973.1 CDS Nhal_1435 NC_013960.1 1456840 1457301 D PFAM: ferritin; KEGG: noc:Noc_1706 ferritin and Dps; ferritin 1456840..1457301 Nitrosococcus halophilus Nc4 8916423 YP_003526974.1 CDS Nhal_1436 NC_013960.1 1457350 1458357 D KEGG: pna:Pnap_1689 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A 1457350..1458357 Nitrosococcus halophilus Nc4 8916424 YP_003526975.1 CDS Nhal_1437 NC_013960.1 1458664 1461792 D TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; Proline dehydrogenase; KEGG: noc:Noc_1705 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; delta-1-pyrroline-5-carboxylate dehydrogenase 1458664..1461792 Nitrosococcus halophilus Nc4 8916425 YP_003526976.1 CDS Nhal_1438 NC_013960.1 1461813 1462259 R PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: noc:Noc_1704 response regulator receiver; response regulator receiver complement(1461813..1462259) Nitrosococcus halophilus Nc4 8916426 YP_003526977.1 CDS Nhal_1439 NC_013960.1 1462269 1463369 R KEGG: noc:Noc_1703 PAS sensor, signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; hypothetical protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein; PAS sensor protein complement(1462269..1463369) Nitrosococcus halophilus Nc4 8916427 YP_003526978.1 CDS Nhal_1440 NC_013960.1 1463366 1463644 R hypothetical protein complement(1463366..1463644) Nitrosococcus halophilus Nc4 8916428 YP_003526979.1 CDS Nhal_1441 NC_013960.1 1463813 1464748 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 1.2; KEGG: noc:Noc_1702 RpoS; sigma-70 family RNA polymerase sigma factor complement(1463813..1464748) Nitrosococcus halophilus Nc4 8916429 YP_003526980.1 CDS Nhal_1442 NC_013960.1 1464926 1465534 R PFAM: response regulator receiver; LuxR family transcriptional regulator; Sigma-70 region 4 type 2; SMART: response regulator receiver; LuxR family transcriptional regulator; KEGG: noc:Noc_1701 two component LuxR family transcriptional regulator; response regulator receiver complement(1464926..1465534) Nitrosococcus halophilus Nc4 8916430 YP_003526981.1 CDS Nhal_1443 NC_013960.1 1465524 1467167 R KEGG: noc:Noc_1700 PAS sensor, signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; PAS sensor protein complement(1465524..1467167) Nitrosococcus halophilus Nc4 8916431 YP_003526982.1 CDS Nhal_1444 NC_013960.1 1467297 1468121 R PFAM: protein of unknown function DUF540; KEGG: noc:Noc_1699 hypothetical protein; hypothetical protein complement(1467297..1468121) Nitrosococcus halophilus Nc4 8916432 YP_003526983.1 CDS Nhal_1445 NC_013960.1 1468134 1469462 R PFAM: carbohydrate kinase FGGY; KEGG: noc:Noc_1697 carbohydrate kinase, FGGY; carbohydrate kinase FGGY complement(1468134..1469462) Nitrosococcus halophilus Nc4 8916433 YP_003526984.1 CDS Nhal_1446 NC_013960.1 1469464 1469853 R KEGG: noc:Noc_1696 7-cyano-7-deazaguanine reductase; TIGRFAM: 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I; 7-cyano-7-deazaguanine reductase complement(1469464..1469853) Nitrosococcus halophilus Nc4 8916434 YP_003526985.1 CDS Nhal_1447 NC_013960.1 1469919 1473428 D TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: noc:Noc_1695 chromosome segregation protein SMC; chromosome segregation protein SMC 1469919..1473428 Nitrosococcus halophilus Nc4 8916435 YP_003526986.1 CDS Nhal_1448 NC_013960.1 1473441 1474349 D KEGG: noc:Noc_1694 cell division protein ZipA; TIGRFAM: cell division protein ZipA; PFAM: ZipA FtsZ-binding region; SMART: ZipA FtsZ-binding region; cell division protein ZipA 1473441..1474349 Nitrosococcus halophilus Nc4 8916436 YP_003526987.1 CDS Nhal_1449 NC_013960.1 1474393 1476420 D KEGG: noc:Noc_1693 DNA ligase (NAD+); TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; SMART: NAD-dependent DNA ligase ; BRCT domain protein; DNA-binding protein; DNA ligase, NAD-dependent 1474393..1476420 Nitrosococcus halophilus Nc4 8916437 YP_003526988.1 CDS Nhal_1450 NC_013960.1 1476550 1476744 D PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: noc:Noc_1692 BFD-like (2Fe-2S)-binding region; BFD domain-containing protein (2Fe-2S)-binding domain-containing protein 1476550..1476744 Nitrosococcus halophilus Nc4 8916438 YP_003526989.1 CDS Nhal_1451 NC_013960.1 1476825 1477247 D PFAM: protein of unknown function UPF0047; KEGG: noc:Noc_1691 hypothetical protein; hypothetical protein 1476825..1477247 Nitrosococcus halophilus Nc4 8916439 YP_003526990.1 CDS Nhal_1452 NC_013960.1 1477244 1477903 R KEGG: noc:Noc_1690 hypothetical protein; hypothetical protein complement(1477244..1477903) Nitrosococcus halophilus Nc4 8916440 YP_003526991.1 CDS Nhal_1453 NC_013960.1 1478047 1478532 D KEGG: noc:Noc_1689 hypothetical protein; hypothetical protein 1478047..1478532 Nitrosococcus halophilus Nc4 8916441 YP_003526992.1 CDS Nhal_1454 NC_013960.1 1478574 1479089 D PFAM: outer membrane lipoprotein Slp; KEGG: noc:Noc_1619 outer membrane lipoprotein Slp; outer membrane lipoprotein Slp 1478574..1479089 Nitrosococcus halophilus Nc4 8916442 YP_003526993.1 CDS Nhal_1455 NC_013960.1 1479246 1479821 D PFAM: conserved hypothetical protein; KEGG: noc:Noc_1688 hypothetical protein; hypothetical protein 1479246..1479821 Nitrosococcus halophilus Nc4 8916443 YP_003526994.1 CDS Nhal_1456 NC_013960.1 1479929 1481602 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_1687 ABC transporter ATP-binding protein; ABC transporter 1479929..1481602 Nitrosococcus halophilus Nc4 8916444 YP_003526995.1 CDS Nhal_1457 NC_013960.1 1481751 1482569 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: noc:Noc_1686 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 1481751..1482569 Nitrosococcus halophilus Nc4 8916445 YP_003526996.1 CDS Nhal_1458 NC_013960.1 1482588 1484114 R KEGG: noc:Noc_1756 PAS sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; hypothetical protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; PAS sensor protein complement(1482588..1484114) Nitrosococcus halophilus Nc4 8916446 YP_003526997.1 CDS Nhal_1459 NC_013960.1 1484261 1484464 D KEGG: noc:Noc_1685 hypothetical protein; hypothetical protein 1484261..1484464 Nitrosococcus halophilus Nc4 8916447 YP_003526998.1 CDS Nhal_1460 NC_013960.1 1484477 1484731 D KEGG: noc:Noc_1684 hypothetical protein; hypothetical protein 1484477..1484731 Nitrosococcus halophilus Nc4 8916448 YP_003526999.1 CDS Nhal_1461 NC_013960.1 1484824 1486287 D PFAM: conserved hypothetical protein; KEGG: noc:Noc_1683 hypothetical protein; hypothetical protein 1484824..1486287 Nitrosococcus halophilus Nc4 8916449 YP_003527000.1 CDS Nhal_1462 NC_013960.1 1486644 1487528 D hypothetical protein 1486644..1487528 Nitrosococcus halophilus Nc4 8916450 YP_003527001.1 CDS Nhal_1463 NC_013960.1 1487540 1489606 D hypothetical protein 1487540..1489606 Nitrosococcus halophilus Nc4 8916451 YP_003527002.1 CDS Nhal_1464 NC_013960.1 1489599 1491410 D PFAM: ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: nam:NAMH_0683 Holliday junction DNA helicase RuvB; ATPase AAA 1489599..1491410 Nitrosococcus halophilus Nc4 8916452 YP_003527003.1 CDS Nhal_1465 NC_013960.1 1491811 1493448 D KEGG: scl:sce6945 ATP binding protein; hypothetical protein 1491811..1493448 Nitrosococcus halophilus Nc4 8916453 YP_003527004.1 CDS Nhal_1468 NC_013960.1 1494367 1494711 D KEGG: glo:Glov_1222 transcriptional regulator; TIGRFAM: addiction module antidote protein; PFAM: hypothetical protein; SMART: hypothetical protein; addiction module antidote protein 1494367..1494711 Nitrosococcus halophilus Nc4 8916456 YP_003527005.1 CDS Nhal_1469 NC_013960.1 1495143 1495370 D KEGG: noc:Noc_1857 hypothetical protein; hypothetical protein 1495143..1495370 Nitrosococcus halophilus Nc4 8916457 YP_003527006.1 CDS Nhal_1470 NC_013960.1 1495814 1496044 D KEGG: noc:Noc_1855 hypothetical protein; hypothetical protein 1495814..1496044 Nitrosococcus halophilus Nc4 8916458 YP_003527007.1 CDS Nhal_1472 NC_013960.1 1496261 1496509 D KEGG: dol:Dole_1759 prevent-host-death family protein; prevent-host-death family protein 1496261..1496509 Nitrosococcus halophilus Nc4 8916460 YP_003527008.1 CDS Nhal_1474 NC_013960.1 1496981 1497409 D PFAM: class I peptide chain release factor; KEGG: noc:Noc_0430 class I peptide chain release factor; class I peptide chain release factor 1496981..1497409 Nitrosococcus halophilus Nc4 8916462 YP_003527009.1 CDS Nhal_1475 NC_013960.1 1497409 1498167 D PFAM: protein of unknown function DUF833; KEGG: aeh:Mlg_1255 hypothetical protein; hypothetical protein 1497409..1498167 Nitrosococcus halophilus Nc4 8916463 YP_003527010.1 CDS Nhal_1476 NC_013960.1 1498243 1498584 R hypothetical protein complement(1498243..1498584) Nitrosococcus halophilus Nc4 8916464 YP_003527011.1 CDS Nhal_1477 NC_013960.1 1498881 1502204 R KEGG: noc:Noc_2709 ATPase-like; ATPase-like protein complement(1498881..1502204) Nitrosococcus halophilus Nc4 8916465 YP_003527012.1 CDS Nhal_1478 NC_013960.1 1502209 1502838 R KEGG: noc:Noc_2708 hypothetical protein; hypothetical protein complement(1502209..1502838) Nitrosococcus halophilus Nc4 8916466 YP_003527013.1 CDS Nhal_1479 NC_013960.1 1503146 1503493 D KEGG: lch:Lcho_1330 peptidase S8 and S53 subtilisin kexin sedolisin; peptidase S8 and S53 subtilisin kexin sedolisin 1503146..1503493 Nitrosococcus halophilus Nc4 8916467 YP_003527014.1 CDS Nhal_1480 NC_013960.1 1503510 1504418 D KEGG: hch:HCH_05488 carbamate kinase; TIGRFAM: carbamate kinase; PFAM: aspartate/glutamate/uridylate kinase; carbamate kinase 1503510..1504418 Nitrosococcus halophilus Nc4 8916468 YP_003527015.1 CDS Nhal_1481 NC_013960.1 1504415 1505770 R KEGG: sat:SYN_01214 cytoplasmic protein; cytoplasmic protein complement(1504415..1505770) Nitrosococcus halophilus Nc4 8916469 YP_003527016.1 CDS Nhal_1482 NC_013960.1 1505777 1507711 R TIGRFAM: aconitate hydratase; PFAM: aconitate hydratase domain protein; KEGG: noc:Noc_2707 aconitate hydratase; aconitate hydratase complement(1505777..1507711) Nitrosococcus halophilus Nc4 8916470 YP_003527017.1 CDS Nhal_1483 NC_013960.1 1507776 1508606 D PFAM: lipase class 3; KEGG: ppr:PBPRA1385 hypothetical protein; lipase class 3 1507776..1508606 Nitrosococcus halophilus Nc4 8916471 YP_003527018.1 CDS Nhal_1484 NC_013960.1 1508826 1509437 D PFAM: flavin reductase domain protein FMN-binding; KEGG: vsp:VS_1703 hypothetical protein; flavin reductase 1508826..1509437 Nitrosococcus halophilus Nc4 8916472 YP_003527019.1 CDS Nhal_1487 NC_013960.1 1510437 1510712 R KEGG: gur:Gura_0037 prevent-host-death family protein; prevent-host-death family protein complement(1510437..1510712) Nitrosococcus halophilus Nc4 8916475 YP_003527020.1 CDS Nhal_1489 NC_013960.1 1512286 1513509 D PFAM: transposase mutator type; KEGG: son:SO_0708 transposase mutator family protein; transposase mutator type 1512286..1513509 Nitrosococcus halophilus Nc4 8916477 YP_003527021.1 CDS Nhal_1490 NC_013960.1 1513556 1514701 R PFAM: transposase IS4 family protein; KEGG: aby:ABAYE3624 IS4 family transposase; transposase IS4 family protein complement(1513556..1514701) Nitrosococcus halophilus Nc4 8916478 YP_003527022.1 CDS Nhal_1492 NC_013960.1 1515608 1518007 R PFAM: protein of unknown function DUF323; KEGG: pat:Patl_0402 CadC family transcriptional regulator; hypothetical protein complement(1515608..1518007) Nitrosococcus halophilus Nc4 8916480 YP_003527023.1 CDS Nhal_1493 NC_013960.1 1518013 1518753 R SMART: TIR protein; KEGG: hap:HAPS_1951 toll-interleukin receptor; TIR protein complement(1518013..1518753) Nitrosococcus halophilus Nc4 8916481 YP_003527024.1 CDS Nhal_1494 NC_013960.1 1518809 1519498 R PFAM: WbqC-like family protein; KEGG: gbm:Gbem_3729 WbqC-like family protein; WbqC-like family protein complement(1518809..1519498) Nitrosococcus halophilus Nc4 8916482 YP_003527025.1 CDS Nhal_1495 NC_013960.1 1519579 1519737 D hypothetical protein 1519579..1519737 Nitrosococcus halophilus Nc4 8916483 YP_003527026.1 CDS Nhal_1496 NC_013960.1 1519814 1519984 R hypothetical protein complement(1519814..1519984) Nitrosococcus halophilus Nc4 8916484 YP_003527027.1 CDS Nhal_1497 NC_013960.1 1520077 1520910 R KEGG: mca:MCA1085 hypothetical protein; hypothetical protein complement(1520077..1520910) Nitrosococcus halophilus Nc4 8916485 YP_003527028.1 CDS Nhal_1498 NC_013960.1 1521038 1523278 D PFAM: protein of unknown function DUF699 ATPase ; GCN5-related N-acetyltransferase; domain of unknown function DUF1726; KEGG: noc:Noc_2706 hypothetical protein; hypothetical protein 1521038..1523278 Nitrosococcus halophilus Nc4 8916486 YP_003527029.1 CDS Nhal_1499 NC_013960.1 1523362 1524630 D PFAM: nucleotidyl transferase; KEGG: tbd:Tbd_1175 glucose-1-phosphate adenylyltransferase; nucleotidyl transferase 1523362..1524630 Nitrosococcus halophilus Nc4 8916487 YP_003527030.1 CDS Nhal_1500 NC_013960.1 1524741 1524956 D hypothetical protein 1524741..1524956 Nitrosococcus halophilus Nc4 8916488 YP_003527031.1 CDS Nhal_1501 NC_013960.1 1525101 1525364 D KEGG: noc:Noc_3005 hypothetical protein; hypothetical protein 1525101..1525364 Nitrosococcus halophilus Nc4 8916489 YP_003527032.1 CDS Nhal_1502 NC_013960.1 1525390 1526529 D KEGG: nmu:Nmul_A0617 poly-gamma-glutamate synthesis protein (capsule biosynthesis protein); poly-gamma-glutamate synthesis protein 1525390..1526529 Nitrosococcus halophilus Nc4 8916490 YP_003527033.1 CDS Nhal_1503 NC_013960.1 1526612 1527007 R KEGG: saz:Sama_0534 hypothetical protein; hypothetical protein complement(1526612..1527007) Nitrosococcus halophilus Nc4 8916491 YP_003527034.1 CDS Nhal_1504 NC_013960.1 1527297 1527434 D hypothetical protein 1527297..1527434 Nitrosococcus halophilus Nc4 8916492 YP_003527035.1 CDS Nhal_1505 NC_013960.1 1527556 1528281 D PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: noc:Noc_2705 Sel1 repeat-containing protein; Sel1 domain-containing protein repeat-containing protein 1527556..1528281 Nitrosococcus halophilus Nc4 8916493 YP_003527036.1 CDS Nhal_1506 NC_013960.1 1528290 1529237 D PFAM: beta-lactamase; KEGG: noc:Noc_2704 metallo-beta-lactamase superfamily protein; beta-lactamase 1528290..1529237 Nitrosococcus halophilus Nc4 8916494 YP_003527037.1 CDS Nhal_1509 NC_013960.1 1530132 1530503 D KEGG: gur:Gura_2468 hypothetical protein; hypothetical protein 1530132..1530503 Nitrosococcus halophilus Nc4 8916497 YP_003527038.1 CDS Nhal_1510 NC_013960.1 1530646 1530984 D hypothetical protein 1530646..1530984 Nitrosococcus halophilus Nc4 8916498 YP_003527039.1 CDS Nhal_1511 NC_013960.1 1531101 1531220 R hypothetical protein complement(1531101..1531220) Nitrosococcus halophilus Nc4 8916499 YP_003527040.1 CDS Nhal_1512 NC_013960.1 1531240 1532331 R PFAM: homoserine O-succinyltransferase; KEGG: noc:Noc_2703 homoserine O-succinyltransferase; homoserine O-succinyltransferase complement(1531240..1532331) Nitrosococcus halophilus Nc4 8916500 YP_003527041.1 CDS Nhal_1513 NC_013960.1 1532369 1533214 R KEGG: noc:Noc_2702 hypothetical protein; hypothetical protein complement(1532369..1533214) Nitrosococcus halophilus Nc4 8916501 YP_003527042.1 CDS Nhal_1514 NC_013960.1 1533687 1534139 R PFAM: OsmC family protein; KEGG: cti:RALTA_A3079 stress-induced protein, OsmC-like protein; OsmC family protein complement(1533687..1534139) Nitrosococcus halophilus Nc4 8916502 YP_003527043.1 CDS Nhal_1515 NC_013960.1 1534186 1534665 R PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: noc:Noc_2767 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(1534186..1534665) Nitrosococcus halophilus Nc4 8916503 YP_003527044.1 CDS Nhal_1516 NC_013960.1 1534763 1535578 R PFAM: silent information regulator protein Sir2; KEGG: bav:BAV2551 NAD-dependent deacetylase (Sir2-like regulatory protein); silent information regulator protein Sir2 complement(1534763..1535578) Nitrosococcus halophilus Nc4 8916504 YP_003527045.1 CDS Nhal_1517 NC_013960.1 1535845 1536987 R PFAM: glycosyl transferase family 2; KEGG: ank:AnaeK_0796 glycosyl transferase family 2; family 2 glycosyl transferase complement(1535845..1536987) Nitrosococcus halophilus Nc4 8916505 YP_003527046.1 CDS Nhal_1518 NC_013960.1 1537055 1537813 R PFAM: VacJ family lipoprotein; KEGG: noc:Noc_0977 VacJ-like lipoprotein; VacJ family lipoprotein complement(1537055..1537813) Nitrosococcus halophilus Nc4 8916506 YP_003527047.1 CDS Nhal_1519 NC_013960.1 1537830 1539107 R KEGG: noc:Noc_0978 hypothetical protein; hypothetical protein complement(1537830..1539107) Nitrosococcus halophilus Nc4 8916507 YP_003527048.1 CDS Nhal_1520 NC_013960.1 1539668 1541695 R PFAM: multicopper oxidase type 2; KEGG: afw:Anae109_0501 bilirubin oxidase; Bilirubin oxidase complement(1539668..1541695) Nitrosococcus halophilus Nc4 8916508 YP_003527049.1 CDS Nhal_1521 NC_013960.1 1541857 1542459 R PFAM: sigma-54 factor interaction domain-containing protein; KEGG: ppd:Ppro_2172 sigma-54 dependent trancsriptional regulator; sigma-54 factor interaction domain-containing protein complement(1541857..1542459) Nitrosococcus halophilus Nc4 8916509 YP_003527050.1 CDS Nhal_1522 NC_013960.1 1542979 1544079 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: mfa:Mfla_1830 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase 1542979..1544079 Nitrosococcus halophilus Nc4 8916510 YP_003527051.1 CDS Nhal_1523 NC_013960.1 1544110 1545780 R KEGG: dps:DP1217 hypothetical protein; hypothetical protein complement(1544110..1545780) Nitrosococcus halophilus Nc4 8916511 YP_003527052.1 CDS Nhal_1524 NC_013960.1 1545777 1546580 R PFAM: lytic transglycosylase catalytic; KEGG: dps:DP1218 lytic transglycosylase; lytic transglycosylase complement(1545777..1546580) Nitrosococcus halophilus Nc4 8916512 YP_003527053.1 CDS Nhal_1525 NC_013960.1 1546583 1547164 R KEGG: dps:DP1223 hypothetical protein; hypothetical protein complement(1546583..1547164) Nitrosococcus halophilus Nc4 8916513 YP_003527054.1 CDS Nhal_1526 NC_013960.1 1547161 1548795 R KEGG: dps:DP1217 hypothetical protein; hypothetical protein complement(1547161..1548795) Nitrosococcus halophilus Nc4 8916514 YP_003527055.1 CDS Nhal_1527 NC_013960.1 1548792 1549688 R KEGG: dps:DP1219 hypothetical protein; hypothetical protein complement(1548792..1549688) Nitrosococcus halophilus Nc4 8916515 YP_003527056.1 CDS Nhal_1528 NC_013960.1 1549688 1550353 R KEGG: dps:DP1220 hypothetical protein; hypothetical protein complement(1549688..1550353) Nitrosococcus halophilus Nc4 8916516 YP_003527057.1 CDS Nhal_1529 NC_013960.1 1550364 1550927 R KEGG: dps:DP1221 hypothetical protein; hypothetical protein complement(1550364..1550927) Nitrosococcus halophilus Nc4 8916517 YP_003527058.1 CDS Nhal_1530 NC_013960.1 1550991 1551983 R KEGG: dps:DP1222 hypothetical protein; hypothetical protein complement(1550991..1551983) Nitrosococcus halophilus Nc4 8916518 YP_003527059.1 CDS Nhal_1531 NC_013960.1 1552325 1552615 D hypothetical protein 1552325..1552615 Nitrosococcus halophilus Nc4 8916519 YP_003527060.1 CDS Nhal_1532 NC_013960.1 1552665 1553633 D PFAM: histone deacetylase superfamily; KEGG: noc:Noc_0962 histone deacetylase superfamily protein; histone deacetylase 1552665..1553633 Nitrosococcus halophilus Nc4 8916520 YP_003527061.1 CDS Nhal_1533 NC_013960.1 1553684 1555102 D PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: vcj:VCD_003030 hypothetical protein; hypothetical protein 1553684..1555102 Nitrosococcus halophilus Nc4 8916521 YP_003527062.1 CDS Nhal_1534 NC_013960.1 1555099 1556211 D PFAM: conserved hypothetical protein; KEGG: yen:YE2117 hypothetical protein; hypothetical protein 1555099..1556211 Nitrosococcus halophilus Nc4 8916522 YP_003527063.1 CDS Nhal_1535 NC_013960.1 1556291 1558900 D PFAM: protein of unknown function UPF0182; KEGG: noc:Noc_0961 hypothetical protein; hypothetical protein 1556291..1558900 Nitrosococcus halophilus Nc4 8916523 YP_003527064.1 CDS Nhal_1536 NC_013960.1 1558921 1560189 R PFAM: sodium/hydrogen exchanger; KEGG: noc:Noc_0960 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(1558921..1560189) Nitrosococcus halophilus Nc4 8916524 YP_003527065.1 CDS Nhal_1537 NC_013960.1 1560320 1561606 R PFAM: nickel-dependent hydrogenase large subunit; KEGG: afe:Lferr_1055 nickel-dependent hydrogenase large subunit; nickel-dependent hydrogenase large subunit complement(1560320..1561606) Nitrosococcus halophilus Nc4 8916525 YP_003527066.1 CDS Nhal_1538 NC_013960.1 1561603 1562424 R PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: afr:AFE_0938 [NiFe] hydrogenase, subunit delta; NADH ubiquinone oxidoreductase 20 kDa subunit complement(1561603..1562424) Nitrosococcus halophilus Nc4 8916526 YP_003527067.1 CDS Nhal_1539 NC_013960.1 1562429 1563283 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: afr:AFE_0939 [NiFe] hydrogenase, subunit gamma; oxidoreductase FAD/NAD(P)-binding domain-containing protein complement(1562429..1563283) Nitrosococcus halophilus Nc4 8916527 YP_003527068.1 CDS Nhal_1540 NC_013960.1 1563276 1564472 R KEGG: afr:AFE_0940 [NiFe] hydrogenase subunit beta; (NiFe) hydrogenase subunit beta complement(1563276..1564472) Nitrosococcus halophilus Nc4 8916528 YP_003527069.1 CDS Nhal_1541 NC_013960.1 1564541 1565610 R KEGG: mch:Mchl_5622 transposase and inactivated derivatives-like protein; hypothetical protein complement(join(1564541..1565122,1565122..1565610)) Nitrosococcus halophilus Nc4 8916529 YP_003527070.1 CDS Nhal_1542 NC_013960.1 1565738 1566166 R KEGG: mca:MCA2498 cysteine-rich repeat-containing protein; hypothetical protein complement(1565738..1566166) Nitrosococcus halophilus Nc4 8916530 YP_003527071.1 CDS Nhal_1544 NC_013960.1 1566759 1567982 D PFAM: transposase mutator type; KEGG: son:SO_0708 transposase mutator family protein; transposase mutator type 1566759..1567982 Nitrosococcus halophilus Nc4 8916532 YP_003527072.1 CDS Nhal_1546 NC_013960.1 1568343 1570655 R KEGG: noc:Noc_0550 hypothetical protein; hypothetical protein complement(1568343..1570655) Nitrosococcus halophilus Nc4 8916534 YP_003527073.1 CDS Nhal_1547 NC_013960.1 1570945 1571472 R KEGG: noc:Noc_0550 hypothetical protein; hypothetical protein complement(1570945..1571472) Nitrosococcus halophilus Nc4 8916535 YP_003527074.1 CDS Nhal_1548 NC_013960.1 1571762 1572289 R KEGG: noc:Noc_0550 hypothetical protein; hypothetical protein complement(1571762..1572289) Nitrosococcus halophilus Nc4 8916536 YP_003527075.1 CDS Nhal_1549 NC_013960.1 1572388 1572918 D hypothetical protein 1572388..1572918 Nitrosococcus halophilus Nc4 8916537 YP_003527076.1 CDS Nhal_1550 NC_013960.1 1573096 1573503 R PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: bbt:BBta_7459 nodulation protein W, two-component transcriptional regulator; response regulator receiver complement(1573096..1573503) Nitrosococcus halophilus Nc4 8916538 YP_003527077.1 CDS Nhal_1551 NC_013960.1 1573698 1574318 R PFAM: response regulator receiver; LuxR family transcriptional regulator; Sigma-70 region 4 type 2; SMART: response regulator receiver; LuxR family transcriptional regulator; KEGG: sfu:Sfum_0582 two component transcriptional regulator, LuxR family; response regulator receiver complement(1573698..1574318) Nitrosococcus halophilus Nc4 8916539 YP_003527078.1 CDS Nhal_1552 NC_013960.1 1574505 1575674 D KEGG: bte:BTH_II2167 hypothetical protein; hypothetical protein 1574505..1575674 Nitrosococcus halophilus Nc4 8916540 YP_003527079.1 CDS Nhal_1553 NC_013960.1 1575662 1577125 D PFAM: carbohydrate-selective porin OprB; KEGG: tmz:Tmz1t_1477 carbohydrate-selective porin OprB; carbohydrate-selective porin OprB 1575662..1577125 Nitrosococcus halophilus Nc4 8916541 YP_003527080.1 CDS Nhal_1554 NC_013960.1 1577138 1578862 D PFAM: hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: noc:Noc_1851 hypothetical protein; hypothetical protein 1577138..1578862 Nitrosococcus halophilus Nc4 8916542 YP_003527081.1 CDS Nhal_1555 NC_013960.1 1578967 1579419 D KEGG: noc:Noc_1850 nitric-oxide reductase; nitric-oxide reductase 1578967..1579419 Nitrosococcus halophilus Nc4 8916543 YP_003527082.1 CDS Nhal_1556 NC_013960.1 1579439 1580785 D PFAM: cytochrome C oxidase subunit I; KEGG: noc:Noc_1849 cytochrome C oxidase subunit I; nitric-oxide reductase 1579439..1580785 Nitrosococcus halophilus Nc4 8916544 YP_003527083.1 CDS Nhal_1557 NC_013960.1 1580797 1581621 D PFAM: ATPase associated with various cellular activities AAA_5; CbbQ/NirQ/NorQ domain protein; KEGG: noc:Noc_1848 ATPase; ATPase AAA 1580797..1581621 Nitrosococcus halophilus Nc4 8916545 YP_003527084.1 CDS Nhal_1558 NC_013960.1 1581627 1583561 D PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: noc:Noc_1847 nitric oxide reductase activation protein; von Willebrand factor A 1581627..1583561 Nitrosococcus halophilus Nc4 8916546 YP_003527085.1 CDS Nhal_1559 NC_013960.1 1583639 1586962 R KEGG: noc:Noc_1846 hypothetical protein; hypothetical protein complement(1583639..1586962) Nitrosococcus halophilus Nc4 8916547 YP_003527086.1 CDS Nhal_1560 NC_013960.1 1586979 1587215 R KEGG: noc:Noc_1845 hypothetical protein; hypothetical protein complement(1586979..1587215) Nitrosococcus halophilus Nc4 8916548 YP_003527087.1 CDS Nhal_1561 NC_013960.1 1587270 1587575 R KEGG: dat:HRM2_43230 hypothetical protein; hypothetical protein complement(1587270..1587575) Nitrosococcus halophilus Nc4 8916549 YP_003527088.1 CDS Nhal_1562 NC_013960.1 1587761 1588801 R KEGG: noc:Noc_1844 hypothetical protein; hypothetical protein complement(1587761..1588801) Nitrosococcus halophilus Nc4 8916550 YP_003527089.1 CDS Nhal_1563 NC_013960.1 1589203 1591587 R KEGG: noc:Noc_1446 phosphoenolpyruvate synthase; TIGRFAM: phosphoenolpyruvate synthase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; PEP-utilizing protein; phosphoenolpyruvate synthase complement(1589203..1591587) Nitrosococcus halophilus Nc4 8916551 YP_003527090.1 CDS Nhal_1564 NC_013960.1 1591919 1592425 R KEGG: psa:PST_1576 hypothetical protein; hypothetical protein complement(1591919..1592425) Nitrosococcus halophilus Nc4 8916552 YP_003527091.1 CDS Nhal_1567 NC_013960.1 1594524 1595351 R PFAM: peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: noc:Noc_0490 peptidoglycan-binding LysM; peptidoglycan-binding LysM complement(1594524..1595351) Nitrosococcus halophilus Nc4 8916555 YP_003527092.1 CDS Nhal_1568 NC_013960.1 1595554 1596648 R KEGG: noc:Noc_0493 hypothetical protein; hypothetical protein complement(1595554..1596648) Nitrosococcus halophilus Nc4 8916556 YP_003527093.1 CDS Nhal_1569 NC_013960.1 1596824 1598095 D KEGG: mno:Mnod_0205 hypothetical protein; hypothetical protein 1596824..1598095 Nitrosococcus halophilus Nc4 8916557 YP_003527094.1 CDS Nhal_1570 NC_013960.1 1598667 1598981 R PFAM: protein of unknown function DUF883 ElaB; KEGG: noc:Noc_1454 hypothetical protein; hypothetical protein complement(1598667..1598981) Nitrosococcus halophilus Nc4 8916558 YP_003527095.1 CDS Nhal_1571 NC_013960.1 1599262 1600254 D PFAM: diacylglycerol kinase; SMART: diacylglycerol kinase; KEGG: noc:Noc_1455 hypothetical protein; diacylglycerol kinase 1599262..1600254 Nitrosococcus halophilus Nc4 8916559 YP_003527096.1 CDS Nhal_1572 NC_013960.1 1600280 1600438 R PFAM: protein of unknown function UPF0057; KEGG: noc:Noc_1445 hypothetical protein; hypothetical protein complement(1600280..1600438) Nitrosococcus halophilus Nc4 8916560 YP_003527097.1 CDS Nhal_1573 NC_013960.1 1600461 1601537 R PFAM: protein of unknown function UPF0118; KEGG: noc:Noc_0491 hypothetical protein; hypothetical protein complement(1600461..1601537) Nitrosococcus halophilus Nc4 8916561 YP_003527098.1 CDS Nhal_1574 NC_013960.1 1601704 1602027 D KEGG: gsu:GSU0710 hypothetical protein; hypothetical protein 1601704..1602027 Nitrosococcus halophilus Nc4 8916562 YP_003527099.1 CDS Nhal_1575 NC_013960.1 1602077 1602424 R hypothetical protein complement(1602077..1602424) Nitrosococcus halophilus Nc4 8916563 YP_003527100.1 CDS Nhal_1576 NC_013960.1 1602424 1603455 R PFAM: Spore germination protein; amino acid permease-associated region; KEGG: tcx:Tcr_1066 amino acid permease-associated region; Spore germination protein complement(1602424..1603455) Nitrosococcus halophilus Nc4 8916564 YP_003527101.1 CDS Nhal_1577 NC_013960.1 1603581 1604816 R KEGG: sat:SYN_02641 cofactor-independent phosphoglycerate mutase; TIGRFAM: phosphonopyruvate decarboxylase-related protein; PFAM: metalloenzyme domain protein; phosphonopyruvate decarboxylase-like protein complement(1603581..1604816) Nitrosococcus halophilus Nc4 8916565 YP_003527102.1 CDS Nhal_1578 NC_013960.1 1604865 1605803 R TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: mxa:MXAN_2372 6-phosphofructokinase; 1-phosphofructokinase complement(1604865..1605803) Nitrosococcus halophilus Nc4 8916566 YP_003527103.1 CDS Nhal_1581 NC_013960.1 1606290 1606538 R hypothetical protein complement(1606290..1606538) Nitrosococcus halophilus Nc4 8916569 YP_003527104.1 CDS Nhal_1582 NC_013960.1 1606631 1609318 R PFAM: CoA-binding protein; GCN5-related N-acetyltransferase; ATP-grasp domain protein; KEGG: pol:Bpro_1205 CoA-binding; CoA-binding protein complement(1606631..1609318) Nitrosococcus halophilus Nc4 8916570 YP_003527105.1 CDS Nhal_1583 NC_013960.1 1609376 1609816 R KEGG: maq:Maqu_2932 hypothetical protein; hypothetical protein complement(1609376..1609816) Nitrosococcus halophilus Nc4 8916571 YP_003527106.1 CDS Nhal_1584 NC_013960.1 1610120 1611010 R SMART: Calcium-binding EF-hand-containing protein; KEGG: noc:Noc_0267 calcium-binding EF-hand; calcium-binding EF-hand protein-containing protein complement(1610120..1611010) Nitrosococcus halophilus Nc4 8916572 YP_003527107.1 CDS Nhal_1585 NC_013960.1 1611133 1614078 R TIGRFAM: transaldolase; PFAM: transaldolase; transketolase domain protein; transketolase; KEGG: noc:Noc_0268 transketolase; transaldolase complement(1611133..1614078) Nitrosococcus halophilus Nc4 8916573 YP_003527108.1 CDS Nhal_1586 NC_013960.1 1614101 1614748 R PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: noc:Noc_0270 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase complement(1614101..1614748) Nitrosococcus halophilus Nc4 8916574 YP_003527109.1 CDS Nhal_1587 NC_013960.1 1614877 1615536 D PFAM: isochorismatase hydrolase; KEGG: noc:Noc_0271 nicotinamidase; nicotinamidase 1614877..1615536 Nitrosococcus halophilus Nc4 8916575 YP_003527110.1 CDS Nhal_1588 NC_013960.1 1615584 1616798 R PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: met:M446_3040 2-alkenal reductase; peptidase S1 and S6 chymotrypsin/Hap complement(1615584..1616798) Nitrosococcus halophilus Nc4 8916576 YP_003527111.1 CDS Nhal_1589 NC_013960.1 1617003 1618928 D KEGG: noc:Noc_0272 peptidase M41, FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; ATP-dependent metalloprotease FtsH 1617003..1618928 Nitrosococcus halophilus Nc4 8916577 YP_003527112.1 CDS Nhal_1590 NC_013960.1 1618948 1619937 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: noc:Noc_0273 sigma-54 specific transcriptional regulator, fis famliy; Fis family transcriptional regulator complement(1618948..1619937) Nitrosococcus halophilus Nc4 8916578 YP_003527113.1 CDS Nhal_1592 NC_013960.1 1620599 1620802 R PFAM: CsbD family protein; KEGG: noc:Noc_0274 CsbD-like protein; CsbD family protein complement(1620599..1620802) Nitrosococcus halophilus Nc4 8916580 YP_003527114.1 CDS Nhal_1593 NC_013960.1 1620903 1621238 R KEGG: noc:Noc_0979 hypothetical protein; hypothetical protein complement(1620903..1621238) Nitrosococcus halophilus Nc4 8916581 YP_003527115.1 CDS Nhal_1594 NC_013960.1 1621313 1621855 R PFAM: PRC-barrel domain protein; KEGG: noc:Noc_0473 peptidoglycan-binding LysM; PRC-barrel domain-containing protein complement(1621313..1621855) Nitrosococcus halophilus Nc4 8916582 YP_003527116.1 CDS Nhal_1595 NC_013960.1 1622139 1623467 D KEGG: rpt:Rpal_3822 hypothetical protein; hypothetical protein 1622139..1623467 Nitrosococcus halophilus Nc4 8916583 YP_003527117.1 CDS Nhal_1596 NC_013960.1 1623564 1624475 D PFAM: diacylglycerol kinase; SMART: diacylglycerol kinase; KEGG: scl:sce9292 hypothetical protein; diacylglycerol kinase 1623564..1624475 Nitrosococcus halophilus Nc4 8916584 YP_003527118.1 CDS Nhal_1597 NC_013960.1 1624572 1624877 R KEGG: noc:Noc_0980 hypothetical protein; hypothetical protein complement(1624572..1624877) Nitrosococcus halophilus Nc4 8916585 YP_003527119.1 CDS Nhal_1598 NC_013960.1 1624929 1625063 R KEGG: rpt:Rpal_1242 hypothetical protein; hypothetical protein complement(1624929..1625063) Nitrosococcus halophilus Nc4 8916586 YP_003527120.1 CDS Nhal_1599 NC_013960.1 1625110 1625394 R KEGG: net:Neut_0488 hypothetical protein; hypothetical protein complement(1625110..1625394) Nitrosococcus halophilus Nc4 8916587 YP_003527121.1 CDS Nhal_1600 NC_013960.1 1625843 1626388 D PFAM: transposase IS605 OrfB; KEGG: noc:Noc_1587 transposase; transposase IS605 OrfB 1625843..1626388 Nitrosococcus halophilus Nc4 8916588 YP_003527122.1 CDS Nhal_1601 NC_013960.1 1626451 1626891 D KEGG: noc:Noc_0275 hypothetical protein; hypothetical protein 1626451..1626891 Nitrosococcus halophilus Nc4 8916589 YP_003527123.1 CDS Nhal_1602 NC_013960.1 1627433 1628122 D PFAM: LuxR family transcriptional regulator; Sigma-70 region 4 type 2; response regulator receiver; SMART: LuxR family transcriptional regulator; response regulator receiver; KEGG: noc:Noc_0276 two component transcription LuxR family regulatory protein; LuxR family transcriptional regulator 1627433..1628122 Nitrosococcus halophilus Nc4 8916590 YP_003527124.1 CDS Nhal_1603 NC_013960.1 1628278 1628448 R PFAM: protein of unknown function DUF1328; KEGG: noc:Noc_0484 hypothetical protein; hypothetical protein complement(1628278..1628448) Nitrosococcus halophilus Nc4 8916591 YP_003527125.1 CDS Nhal_1604 NC_013960.1 1629088 1629606 D KEGG: eba:ebA4524 hypothetical protein; hypothetical protein 1629088..1629606 Nitrosococcus halophilus Nc4 8916592 YP_003527126.1 CDS Nhal_1605 NC_013960.1 1629840 1630553 R PFAM: PRC-barrel domain protein; KEGG: noc:Noc_0473 peptidoglycan-binding LysM; PRC-barrel domain-containing protein complement(1629840..1630553) Nitrosococcus halophilus Nc4 8916593 YP_003527127.1 CDS Nhal_1606 NC_013960.1 1631344 1631517 R KEGG: noc:Noc_0980 hypothetical protein; hypothetical protein complement(1631344..1631517) Nitrosococcus halophilus Nc4 8916594 YP_003527128.1 CDS Nhal_1607 NC_013960.1 1631787 1632095 D PFAM: transport-associated; SMART: transport-associated and nodulation region; KEGG: noc:Noc_0278 periplasmic or secreted lipoprotein; transporter 1631787..1632095 Nitrosococcus halophilus Nc4 8916595 YP_003527129.1 CDS Nhal_1608 NC_013960.1 1632127 1633287 R PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: noc:Noc_0279 ABC transporter ATPase subunit; ABC transporter complement(1632127..1633287) Nitrosococcus halophilus Nc4 8916596 YP_003527130.1 CDS Nhal_1609 NC_013960.1 1633333 1634178 R PFAM: binding-protein-dependent transporters inner membrane component; KEGG: noc:Noc_0280 ABC transporter inner membrane subunit; binding-protein-dependent transporters inner membrane component complement(1633333..1634178) Nitrosococcus halophilus Nc4 8916597 YP_003527131.1 CDS Nhal_1610 NC_013960.1 1634178 1635056 R PFAM: binding-protein-dependent transporters inner membrane component; KEGG: noc:Noc_0281 ABC transporter inner membrane subunit; binding-protein-dependent transporters inner membrane component complement(1634178..1635056) Nitrosococcus halophilus Nc4 8916598 YP_003527132.1 CDS Nhal_1611 NC_013960.1 1635053 1636303 R PFAM: extracellular solute-binding protein family 1; KEGG: noc:Noc_0282 extracellular solute-binding protein; family 1 extracellular solute-binding protein complement(1635053..1636303) Nitrosococcus halophilus Nc4 8916599 YP_003527133.1 CDS Nhal_1612 NC_013960.1 1636278 1639667 R KEGG: aeh:Mlg_1471 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ATP-cone domain protein; SMART: Hedgehog/intein hint domain protein; ribonucleoside-triphosphate reductase complement(1636278..1639667) Nitrosococcus halophilus Nc4 8916600 YP_003527134.1 CDS Nhal_1613 NC_013960.1 1639932 1640849 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: noc:Noc_1919 LysR family transcriptional regulator; LysR family transcriptional regulator complement(1639932..1640849) Nitrosococcus halophilus Nc4 8916601 YP_003527135.1 CDS Nhal_1614 NC_013960.1 1641902 1642798 R KEGG: noc:Noc_1915 hypothetical protein; hypothetical protein complement(1641902..1642798) Nitrosococcus halophilus Nc4 8916602 YP_003527136.1 CDS Nhal_1615 NC_013960.1 1643214 1644275 R TIGRFAM: formate dehydrogenase, subunit gamma; KEGG: aeh:Mlg_1289 formate dehydrogenase subunit gamma; formate dehydrogenase subunit gamma complement(1643214..1644275) Nitrosococcus halophilus Nc4 8916603 YP_003527137.1 CDS Nhal_1616 NC_013960.1 1644294 1644470 R hypothetical protein complement(1644294..1644470) Nitrosococcus halophilus Nc4 8916604 YP_003527138.1 CDS Nhal_1617 NC_013960.1 1644521 1644724 R hypothetical protein complement(1644521..1644724) Nitrosococcus halophilus Nc4 8916605 YP_003527139.1 CDS Nhal_1618 NC_013960.1 1644756 1645343 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: aeh:Mlg_1287 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein complement(1644756..1645343) Nitrosococcus halophilus Nc4 8916606 YP_003527140.1 CDS Nhal_1619 NC_013960.1 1645359 1648352 R PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: aeh:Mlg_1286 formate dehydrogenase subunit alpha; molybdopterin oxidoreductase complement(1645359..1648352) Nitrosococcus halophilus Nc4 8916607 YP_003527141.1 CDS Nhal_1620 NC_013960.1 1648418 1648627 R KEGG: aeh:Mlg_1285 hypothetical protein; hypothetical protein complement(1648418..1648627) Nitrosococcus halophilus Nc4 8916608 YP_003527142.1 CDS Nhal_1621 NC_013960.1 1648666 1649304 R PFAM: cytoplasmic chaperone TorD family protein; KEGG: aeh:Mlg_1284 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein complement(1648666..1649304) Nitrosococcus halophilus Nc4 8916609 YP_003527143.1 CDS Nhal_1622 NC_013960.1 1649304 1650977 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: aeh:Mlg_1283 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein complement(1649304..1650977) Nitrosococcus halophilus Nc4 8916610 YP_003527144.1 CDS Nhal_1623 NC_013960.1 1651003 1651581 R KEGG: aeh:Mlg_1282 hypothetical protein; hypothetical protein complement(1651003..1651581) Nitrosococcus halophilus Nc4 8916611 YP_003527145.1 CDS Nhal_1624 NC_013960.1 1651541 1652056 R KEGG: azo:azo3487 hypothetical protein; hypothetical protein complement(1651541..1652056) Nitrosococcus halophilus Nc4 8916612 YP_003527146.1 CDS Nhal_1625 NC_013960.1 1652378 1653112 D PFAM: IS1 transposase; KEGG: prw:PsycPRwf_1938 IS1 transposase; IS1 transposase 1652378..1653112 Nitrosococcus halophilus Nc4 8916613 YP_003527147.1 CDS Nhal_1626 NC_013960.1 1653214 1653963 D KEGG: sme:SMc02315 hypothetical protein; hypothetical protein 1653214..1653963 Nitrosococcus halophilus Nc4 8916614 YP_003527148.1 CDS Nhal_1627 NC_013960.1 1654131 1654460 D KEGG: sme:SMc02316 hypothetical protein; hypothetical protein 1654131..1654460 Nitrosococcus halophilus Nc4 8916615 YP_003527149.1 CDS Nhal_1628 NC_013960.1 1654493 1655122 R PFAM: IS1 transposase; KEGG: vvy:VV0559 transposase B; IS1 transposase complement(1654493..1655122) Nitrosococcus halophilus Nc4 8916616 YP_003527150.1 CDS Nhal_1629 NC_013960.1 1655156 1655320 R KEGG: prw:PsycPRwf_1938 IS1 transposase; hypothetical protein complement(1655156..1655320) Nitrosococcus halophilus Nc4 8916617 YP_003527151.1 CDS Nhal_1630 NC_013960.1 1655382 1655732 R KEGG: ara:Arad_7600 hypothetical protein; hypothetical protein complement(1655382..1655732) Nitrosococcus halophilus Nc4 8916618 YP_003527152.1 CDS Nhal_1631 NC_013960.1 1655734 1656978 R KEGG: nha:Nham_3012 HPr kinase; hypothetical protein complement(1655734..1656978) Nitrosococcus halophilus Nc4 8916619 YP_003527153.1 CDS Nhal_1632 NC_013960.1 1657076 1658047 R PFAM: patatin; KEGG: tgr:Tgr7_1058 patatin; patatin complement(1657076..1658047) Nitrosococcus halophilus Nc4 8916620 YP_003527154.1 CDS Nhal_1634 NC_013960.1 1658965 1660230 R KEGG: noc:Noc_1913 hypothetical protein; hypothetical protein complement(1658965..1660230) Nitrosococcus halophilus Nc4 8916622 YP_003527155.1 CDS Nhal_1635 NC_013960.1 1660320 1662488 R KEGG: noc:Noc_1912 phospholipase D/transphosphatidylase; PFAM: SNARE associated Golgi protein; phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase; phospholipase D complement(1660320..1662488) Nitrosococcus halophilus Nc4 8916623 YP_003527156.1 CDS Nhal_1636 NC_013960.1 1662675 1664018 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: noc:Noc_1911 two component sigma-54 specific, fis family transcriptional regulator; Fis family transcriptional regulator complement(1662675..1664018) Nitrosococcus halophilus Nc4 8916624 YP_003527157.1 CDS Nhal_1638 NC_013960.1 1664677 1665987 D KEGG: gsu:GSU1615 hypothetical protein; hypothetical protein 1664677..1665987 Nitrosococcus halophilus Nc4 8916626 YP_003527158.1 CDS Nhal_1639 NC_013960.1 1665984 1668416 D PFAM: peptidase S16; KEGG: tgr:Tgr7_0259 peptidase S16; peptidase S16 1665984..1668416 Nitrosococcus halophilus Nc4 8916627 YP_003527159.1 CDS Nhal_1640 NC_013960.1 1668382 1669182 D KEGG: pla:Plav_0741 hypothetical protein; hypothetical protein 1668382..1669182 Nitrosococcus halophilus Nc4 8916628 YP_003527160.1 CDS Nhal_1641 NC_013960.1 1669179 1669841 R KEGG: noc:Noc_1412 hypothetical protein; hypothetical protein complement(1669179..1669841) Nitrosococcus halophilus Nc4 8916629 YP_003527161.1 CDS Nhal_1642 NC_013960.1 1669929 1671068 D PFAM: ATP dependent DNA ligase; KEGG: noc:Noc_1413 ATP-dependent DNA ligase; ATP dependent DNA ligase 1669929..1671068 Nitrosococcus halophilus Nc4 8916630 YP_003527162.1 CDS Nhal_1643 NC_013960.1 1671090 1671689 R PFAM: protein of unknown function UPF0278; KEGG: noc:Noc_1414 hypothetical protein; hypothetical protein complement(1671090..1671689) Nitrosococcus halophilus Nc4 8916631 YP_003527163.1 CDS Nhal_1646 NC_013960.1 1673439 1673549 D hypothetical protein 1673439..1673549 Nitrosococcus halophilus Nc4 8916634 YP_003527164.1 CDS Nhal_1647 NC_013960.1 1673576 1674142 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: noc:Noc_2438 sigma 54 modulation protein/ribosomal protein S30EA; Cold-shock protein DNA-binding protein 1673576..1674142 Nitrosococcus halophilus Nc4 8916635 YP_003527165.1 CDS Nhal_1648 NC_013960.1 1674150 1675226 D TIGRFAM: magnesium and cobalt transporter CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: noc:Noc_1416 magnesium/cobalt transporter CorA; magnesium and cobalt transporter CorA 1674150..1675226 Nitrosococcus halophilus Nc4 8916636 YP_003527166.1 CDS Nhal_1649 NC_013960.1 1675252 1675887 D PFAM: protein of unknown function DUF599; KEGG: noc:Noc_1417 hypothetical protein; hypothetical protein 1675252..1675887 Nitrosococcus halophilus Nc4 8916637 YP_003527167.1 CDS Nhal_1650 NC_013960.1 1675782 1679051 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: noc:Noc_1418 heavy metal efflux pump; CzcA family heavy metal efflux pump complement(1675782..1679051) Nitrosococcus halophilus Nc4 8916638 YP_003527168.1 CDS Nhal_1651 NC_013960.1 1679081 1680364 R TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: noc:Noc_1419 secretion protein HlyD; RND family efflux transporter MFP subunit complement(1679081..1680364) Nitrosococcus halophilus Nc4 8916639 YP_003527169.1 CDS Nhal_1652 NC_013960.1 1680367 1681764 R PFAM: outer membrane efflux protein; KEGG: noc:Noc_1420 outer membrane efflux protein; outer membrane efflux protein complement(1680367..1681764) Nitrosococcus halophilus Nc4 8916640 YP_003527170.1 CDS Nhal_1653 NC_013960.1 1681888 1682388 R KEGG: noc:Noc_1421 hypothetical protein; hypothetical protein complement(1681888..1682388) Nitrosococcus halophilus Nc4 8916641 YP_003527171.1 CDS Nhal_1654 NC_013960.1 1682411 1684678 R KEGG: spl:Spea_2700 outer membrane protein precursor MtrB; hypothetical protein complement(1682411..1684678) Nitrosococcus halophilus Nc4 8916642 YP_003527172.1 CDS Nhal_1655 NC_013960.1 1684732 1685670 R TIGRFAM: cytochrome C family protein; KEGG: dar:Daro_1402 double CXXCH motif-containing protein; cytochrome C family protein complement(1684732..1685670) Nitrosococcus halophilus Nc4 8916643 YP_003527173.1 CDS Nhal_1656 NC_013960.1 1686420 1687133 R PFAM: peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: noc:Noc_1406 cation transport ATPase; peptidoglycan-binding LysM complement(1686420..1687133) Nitrosococcus halophilus Nc4 8916644 YP_003527174.1 CDS Nhal_1657 NC_013960.1 1687142 1688461 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding 8 domain protein; ferric reductase domain protein transmembrane component domain; KEGG: ank:AnaeK_0310 oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain-containing protein complement(1687142..1688461) Nitrosococcus halophilus Nc4 8916645 YP_003527175.1 CDS Nhal_1658 NC_013960.1 1688700 1689194 R KEGG: noc:Noc_2933 hypothetical protein; hypothetical protein complement(1688700..1689194) Nitrosococcus halophilus Nc4 8916646 YP_003527176.1 CDS Nhal_1659 NC_013960.1 1689272 1689937 R KEGG: neu:NE1539 hypothetical protein; hypothetical protein complement(1689272..1689937) Nitrosococcus halophilus Nc4 8916647 YP_003527177.1 CDS Nhal_1660 NC_013960.1 1690683 1691123 D PFAM: transcription regulator MerR DNA binding; MerR family transcriptional regulator; SMART: MerR family transcriptional regulator; KEGG: pat:Patl_2090 MerR family transcriptional regulator; transcription regulator MerR DNA binding protein 1690683..1691123 Nitrosococcus halophilus Nc4 8916648 YP_003527178.1 CDS Nhal_1661 NC_013960.1 1691369 1691665 D KEGG: pnu:Pnuc_1672 heavy metal transport/detoxification protein; hypothetical protein 1691369..1691665 Nitrosococcus halophilus Nc4 8916649 YP_003527179.1 CDS Nhal_1662 NC_013960.1 1691697 1692602 D KEGG: lpp:lpp1217 hypothetical protein; hypothetical protein 1691697..1692602 Nitrosococcus halophilus Nc4 8916650 YP_003527180.1 CDS Nhal_1663 NC_013960.1 1692622 1693596 D PFAM: NHL repeat containing protein; KEGG: hypothetical protein; NHL repeat containing protein 1692622..1693596 Nitrosococcus halophilus Nc4 8916651 YP_003527181.1 CDS Nhal_1665 NC_013960.1 1696269 1696730 D KEGG: noc:Noc_2435 hypothetical protein; hypothetical protein 1696269..1696730 Nitrosococcus halophilus Nc4 8916653 YP_003527182.1 CDS Nhal_1667 NC_013960.1 1697839 1698342 D KEGG: tgr:Tgr7_1317 protein of unknown function DUF1568; hypothetical protein 1697839..1698342 Nitrosococcus halophilus Nc4 8916655 YP_003527183.1 CDS Nhal_1668 NC_013960.1 1698346 1698456 D hypothetical protein 1698346..1698456 Nitrosococcus halophilus Nc4 8916656 YP_003527184.1 CDS Nhal_1669 NC_013960.1 1698437 1698562 R hypothetical protein complement(1698437..1698562) Nitrosococcus halophilus Nc4 8916657 YP_003527185.1 CDS Nhal_1670 NC_013960.1 1698546 1698719 R hypothetical protein complement(1698546..1698719) Nitrosococcus halophilus Nc4 8916658 YP_003527186.1 CDS Nhal_1671 NC_013960.1 1698712 1699572 R PFAM: fatty acid hydroxylase; KEGG: noc:Noc_1326 sterol desaturase-related protein; fatty acid hydroxylase complement(1698712..1699572) Nitrosococcus halophilus Nc4 8916659 YP_003527187.1 CDS Nhal_1672 NC_013960.1 1699559 1702873 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: noc:Noc_1535 heavy metal efflux pump; CzcA family heavy metal efflux pump complement(1699559..1702873) Nitrosococcus halophilus Nc4 8916660 YP_003527188.1 CDS Nhal_1673 NC_013960.1 1702867 1704393 R TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: noc:Noc_1536 secretion protein HlyD; RND family efflux transporter MFP subunit complement(1702867..1704393) Nitrosococcus halophilus Nc4 8916661 YP_003527189.1 CDS Nhal_1674 NC_013960.1 1704390 1705724 R PFAM: outer membrane efflux protein; KEGG: noc:Noc_1537 outer membrane efflux protein; outer membrane efflux protein complement(1704390..1705724) Nitrosococcus halophilus Nc4 8916662 YP_003527190.1 CDS Nhal_1675 NC_013960.1 1705814 1706254 R KEGG: noc:Noc_1538 hypothetical protein; hypothetical protein complement(1705814..1706254) Nitrosococcus halophilus Nc4 8916663 YP_003527191.1 CDS Nhal_1676 NC_013960.1 1706607 1708100 R TIGRFAM: mercuric reductase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: shn:Shewana3_4345 mercuric reductase; mercuric reductase complement(1706607..1708100) Nitrosococcus halophilus Nc4 8916664 YP_003527192.1 CDS Nhal_1677 NC_013960.1 1708097 1708348 R KEGG: maq:Maqu_0241 hypothetical protein; hypothetical protein complement(1708097..1708348) Nitrosococcus halophilus Nc4 8916665 YP_003527193.1 CDS Nhal_1678 NC_013960.1 1708341 1708640 R TIGRFAM: mercuric transporter periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: amc:MADE_01410 periplasmic mercuric ion binding protein MerP; mercuric transporter periplasmic component complement(1708341..1708640) Nitrosococcus halophilus Nc4 8916666 YP_003527194.1 CDS Nhal_1679 NC_013960.1 1708653 1709057 R PFAM: Mercuric transporter MerT; KEGG: oan:Oant_3157 mercuric transporter MerT; Mercuric transporter MerT complement(1708653..1709057) Nitrosococcus halophilus Nc4 8916667 YP_003527195.1 CDS Nhal_1680 NC_013960.1 1709135 1709623 D PFAM: transcription regulator MerR DNA binding; MerR family transcriptional regulator; SMART: MerR family transcriptional regulator; KEGG: oca:OCAR_7754 mercuric resistance operon regulatory protein; transcription regulator MerR DNA binding protein 1709135..1709623 Nitrosococcus halophilus Nc4 8916668 YP_003527196.1 CDS Nhal_1681 NC_013960.1 1709774 1710097 R PFAM: protein of unknown function UPF0060; KEGG: nha:Nham_2004 hypothetical protein; hypothetical protein complement(1709774..1710097) Nitrosococcus halophilus Nc4 8916669 YP_003527197.1 CDS Nhal_1682 NC_013960.1 1710210 1710659 D KEGG: noc:Noc_1338 hypothetical protein; hypothetical protein 1710210..1710659 Nitrosococcus halophilus Nc4 8916670 YP_003527198.1 CDS Nhal_1683 NC_013960.1 1710722 1712014 D TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: noc:Noc_1339 secretion protein HlyD; RND family efflux transporter MFP subunit 1710722..1712014 Nitrosococcus halophilus Nc4 8916671 YP_003527199.1 CDS Nhal_1684 NC_013960.1 1712031 1715174 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: noc:Noc_1340 heavy metal efflux pump; CzcA family heavy metal efflux pump 1712031..1715174 Nitrosococcus halophilus Nc4 8916672 YP_003527200.1 CDS Nhal_1685 NC_013960.1 1715405 1716154 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: noc:Noc_1534 cation efflux protein; cation diffusion facilitator family transporter 1715405..1716154 Nitrosococcus halophilus Nc4 8916673 YP_003527201.1 CDS Nhal_1686 NC_013960.1 1716613 1716996 D KEGG: noc:Noc_1527 hypothetical protein; hypothetical protein 1716613..1716996 Nitrosococcus halophilus Nc4 8916674 YP_003527202.1 CDS Nhal_1687 NC_013960.1 1717250 1718716 D PFAM: outer membrane efflux protein; KEGG: noc:Noc_1528 outer membrane efflux protein; outer membrane efflux protein 1717250..1718716 Nitrosococcus halophilus Nc4 8916675 YP_003527203.1 CDS Nhal_1688 NC_013960.1 1718713 1720098 D TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: noc:Noc_1529 secretion protein HlyD; RND family efflux transporter MFP subunit 1718713..1720098 Nitrosococcus halophilus Nc4 8916676 YP_003527204.1 CDS Nhal_1689 NC_013960.1 1720107 1723418 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: noc:Noc_1530 heavy metal efflux pump; CzcA family heavy metal efflux pump 1720107..1723418 Nitrosococcus halophilus Nc4 8916677 YP_003527205.1 CDS Nhal_1690 NC_013960.1 1723405 1723917 R KEGG: noc:Noc_0487 hypothetical protein; hypothetical protein complement(1723405..1723917) Nitrosococcus halophilus Nc4 8916678 YP_003527206.1 CDS Nhal_1691 NC_013960.1 1724468 1724758 D KEGG: scl:sce8100 multicopper oxidase; multicopper oxidase 1724468..1724758 Nitrosococcus halophilus Nc4 8916679 YP_003527207.1 CDS Nhal_1692 NC_013960.1 1724971 1725474 D hypothetical protein 1724971..1725474 Nitrosococcus halophilus Nc4 8916680 YP_003527208.1 CDS Nhal_1693 NC_013960.1 1725582 1726970 D KEGG: noc:Noc_2899 hypothetical protein; hypothetical protein 1725582..1726970 Nitrosococcus halophilus Nc4 8916681 YP_003527209.1 CDS Nhal_1694 NC_013960.1 1727018 1727179 R hypothetical protein complement(1727018..1727179) Nitrosococcus halophilus Nc4 8916682 YP_003527210.1 CDS Nhal_1695 NC_013960.1 1727203 1727529 D KEGG: tcx:Tcr_2100 hypothetical protein; hypothetical protein 1727203..1727529 Nitrosococcus halophilus Nc4 8916683 YP_003527211.1 CDS Nhal_1696 NC_013960.1 1727623 1730409 D KEGG: afr:AFE_2439 copper-translocating P-type ATPase; TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; ATPase P 1727623..1730409 Nitrosococcus halophilus Nc4 8916684 YP_003527212.1 CDS Nhal_1697 NC_013960.1 1730445 1731662 D PFAM: glycosyl transferase group 1; KEGG: geo:Geob_2843 glycosyl transferase group 1; group 1 glycosyl transferase 1730445..1731662 Nitrosococcus halophilus Nc4 8916685 YP_003527213.1 CDS Nhal_1698 NC_013960.1 1731736 1732122 D KEGG: noc:Noc_1539 hypothetical protein; hypothetical protein 1731736..1732122 Nitrosococcus halophilus Nc4 8916686 YP_003527214.1 CDS Nhal_1699 NC_013960.1 1732189 1732932 D PFAM: YHS domain protein; SMART: TRASH domain protein; KEGG: dal:Dalk_4361 Rossmann fold nucleotide-binding protein; YHS domain-containing protein 1732189..1732932 Nitrosococcus halophilus Nc4 8916687 YP_003527215.1 CDS Nhal_1700 NC_013960.1 1733005 1733211 D KEGG: tgr:Tgr7_0876 hypothetical protein; hypothetical protein 1733005..1733211 Nitrosococcus halophilus Nc4 8916688 YP_003527216.1 CDS Nhal_1702 NC_013960.1 1733529 1733768 D KEGG: dol:Dole_0430 hypothetical protein; hypothetical protein 1733529..1733768 Nitrosococcus halophilus Nc4 8916690 YP_003527217.1 CDS Nhal_1703 NC_013960.1 1734083 1735066 D PFAM: radical SAM protein; KEGG: scl:sce0132 pyruvate formate lyase activating enzyme; radical SAM protein 1734083..1735066 Nitrosococcus halophilus Nc4 8916691 YP_003527218.1 CDS Nhal_1704 NC_013960.1 1735103 1736263 R KEGG: dar:Daro_2995 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; hypothetical protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS sensor protein complement(1735103..1736263) Nitrosococcus halophilus Nc4 8916692 YP_003527219.1 CDS Nhal_1705 NC_013960.1 1736532 1736672 R hypothetical protein complement(1736532..1736672) Nitrosococcus halophilus Nc4 8916693 YP_003527220.1 CDS Nhal_1706 NC_013960.1 1736647 1737930 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: afr:AFE_1023 HNH endonuclease domain protein; HNH endonuclease complement(1736647..1737930) Nitrosococcus halophilus Nc4 8916694 YP_003527221.1 CDS Nhal_1707 NC_013960.1 1738316 1738822 R KEGG: noc:Noc_1422 hypothetical protein; hypothetical protein complement(1738316..1738822) Nitrosococcus halophilus Nc4 8916695 YP_003527222.1 CDS Nhal_1708 NC_013960.1 1738857 1741367 R TIGRFAM: ATPase P; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; haloacid dehalogenase; KEGG: dat:HRM2_00430 SilP; ATPase P complement(1738857..1741367) Nitrosococcus halophilus Nc4 8916696 YP_003527223.1 CDS Nhal_1709 NC_013960.1 1741452 1742519 R TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: wsu:WS2173 hypothetical protein; CaCA family Na+/Ca+ antiporter complement(1741452..1742519) Nitrosococcus halophilus Nc4 8916697 YP_003527224.1 CDS Nhal_1711 NC_013960.1 1743000 1743590 R KEGG: noc:Noc_1424 hypothetical protein; hypothetical protein complement(1743000..1743590) Nitrosococcus halophilus Nc4 8916699 YP_003527225.1 CDS Nhal_1712 NC_013960.1 1743727 1745421 D KEGG: eba:ebA6232 hypothetical protein; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; alpha-glucan phosphorylase 1743727..1745421 Nitrosococcus halophilus Nc4 8916700 YP_003527226.1 CDS Nhal_1713 NC_013960.1 1745450 1745875 R KEGG: gme:Gmet_0037 hypothetical protein; hypothetical protein complement(1745450..1745875) Nitrosococcus halophilus Nc4 8916701 YP_003527227.1 CDS Nhal_1714 NC_013960.1 1745988 1746560 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: lpp:lpp2547 hypothetical protein; alkylhydroperoxidase like protein 1745988..1746560 Nitrosococcus halophilus Nc4 8916702 YP_003527228.1 CDS Nhal_1717 NC_013960.1 1748168 1748308 R hypothetical protein complement(1748168..1748308) Nitrosococcus halophilus Nc4 8916705 YP_003527229.1 CDS Nhal_1718 NC_013960.1 1748448 1749581 D PFAM: protein of unknown function UPF0118; KEGG: noc:Noc_1428 hypothetical protein; hypothetical protein 1748448..1749581 Nitrosococcus halophilus Nc4 8916706 YP_003527230.1 CDS Nhal_1719 NC_013960.1 1749618 1751585 D PFAM: CHASE2 domain protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: hha:Hhal_0302 CHASE2 sensor protein; CHASE2 domain-containing protein 1749618..1751585 Nitrosococcus halophilus Nc4 8916707 YP_003527231.1 CDS Nhal_1720 NC_013960.1 1751601 1752392 D PFAM: protein of unknown function DUF928; hypothetical protein 1751601..1752392 Nitrosococcus halophilus Nc4 8916708 YP_003527232.1 CDS Nhal_1721 NC_013960.1 1753224 1753538 D KEGG: bxe:Bxe_B2908 haemagglutinin; hemagglutinin 1753224..1753538 Nitrosococcus halophilus Nc4 8916709 YP_003527233.1 CDS Nhal_1722 NC_013960.1 1753608 1753946 D hypothetical protein 1753608..1753946 Nitrosococcus halophilus Nc4 8916710 YP_003527234.1 CDS Nhal_1723 NC_013960.1 1754201 1755805 D KEGG: asu:Asuc_0397 peptidoglycan binding domain-containing protein; hypothetical protein 1754201..1755805 Nitrosococcus halophilus Nc4 8916711 YP_003527235.1 CDS Nhal_1724 NC_013960.1 1755819 1756118 D KEGG: dol:Dole_2507 hypothetical protein; hypothetical protein 1755819..1756118 Nitrosococcus halophilus Nc4 8916712 YP_003527236.1 CDS Nhal_1725 NC_013960.1 1756225 1756833 D PFAM: OmpA/MotB domain protein; KEGG: rpb:RPB_0900 OmpA/MotB; OmpA/MotB domain-containing protein 1756225..1756833 Nitrosococcus halophilus Nc4 8916713 YP_003527237.1 CDS Nhal_1726 NC_013960.1 1756845 1757699 D KEGG: har:HEAR3228 hypothetical protein; hypothetical protein 1756845..1757699 Nitrosococcus halophilus Nc4 8916714 YP_003527238.1 CDS Nhal_1727 NC_013960.1 1757734 1758102 D hypothetical protein 1757734..1758102 Nitrosococcus halophilus Nc4 8916715 YP_003527239.1 CDS Nhal_1728 NC_013960.1 1758355 1760826 R PFAM: peptidase C14 caspase catalytic subunit p20; Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: hch:HCH_04244 hypothetical protein; peptidase C14 caspase catalytic subunit p20 complement(1758355..1760826) Nitrosococcus halophilus Nc4 8916716 YP_003527240.1 CDS Nhal_1729 NC_013960.1 1761083 1761517 R KEGG: gsu:GSU2315 hypothetical protein; hypothetical protein complement(1761083..1761517) Nitrosococcus halophilus Nc4 8916717 YP_003527241.1 CDS Nhal_1730 NC_013960.1 1761715 1761918 D KEGG: noc:Noc_1429 hypothetical protein; hypothetical protein 1761715..1761918 Nitrosococcus halophilus Nc4 8916718 YP_003527242.1 CDS Nhal_1731 NC_013960.1 1762134 1764452 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: noc:Noc_1430 TonB-dependent receptor; TonB-dependent receptor 1762134..1764452 Nitrosococcus halophilus Nc4 8916719 YP_003527243.1 CDS Nhal_1732 NC_013960.1 1764550 1765203 R KEGG: rhi:NGR_b20500 hydrolase protein; hydrolase protein complement(1764550..1765203) Nitrosococcus halophilus Nc4 8916720 YP_003527244.1 CDS Nhal_1733 NC_013960.1 1765326 1765694 D KEGG: nmu:Nmul_A0035 hypothetical protein; hypothetical protein 1765326..1765694 Nitrosococcus halophilus Nc4 8916721 YP_003527245.1 CDS Nhal_1734 NC_013960.1 1766046 1766858 D KEGG: reu:Reut_A2010 hypothetical protein; hypothetical protein 1766046..1766858 Nitrosococcus halophilus Nc4 8916722 YP_003527246.1 CDS Nhal_1735 NC_013960.1 1766971 1767705 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_1836 ABC transporter ATPase; ABC transporter 1766971..1767705 Nitrosococcus halophilus Nc4 8916723 YP_003527247.1 CDS Nhal_1736 NC_013960.1 1767696 1768499 D PFAM: conserved hypothetical protein; KEGG: noc:Noc_1835 hypothetical protein; hypothetical protein 1767696..1768499 Nitrosococcus halophilus Nc4 8916724 YP_003527248.1 CDS Nhal_1737 NC_013960.1 1768670 1768918 D PFAM: protein of unknown function DUF433; KEGG: afr:AFE_1367 hypothetical protein; hypothetical protein 1768670..1768918 Nitrosococcus halophilus Nc4 8916725 YP_003527249.1 CDS Nhal_1738 NC_013960.1 1768908 1769264 D KEGG: rpt:Rpal_0895 hypothetical protein; hypothetical protein 1768908..1769264 Nitrosococcus halophilus Nc4 8916726 YP_003527250.1 CDS Nhal_1739 NC_013960.1 1769460 1770178 D hypothetical protein join(1769460..1769738,1769738..1770178) Nitrosococcus halophilus Nc4 8916727 YP_003527251.1 CDS Nhal_1740 NC_013960.1 1770231 1770452 D KEGG: gur:Gura_4195 hypothetical protein; hypothetical protein 1770231..1770452 Nitrosococcus halophilus Nc4 8916728 YP_003527252.1 CDS Nhal_1741 NC_013960.1 1770407 1770721 D KEGG: afe:Lferr_0674 hypothetical protein; hypothetical protein 1770407..1770721 Nitrosococcus halophilus Nc4 8916729 YP_003527253.1 CDS Nhal_1742 NC_013960.1 1770878 1771282 D PFAM: Penicillinase repressor; KEGG: noc:Noc_0290 penicillinase repressor; Penicillinase repressor 1770878..1771282 Nitrosococcus halophilus Nc4 8916730 YP_003527254.1 CDS Nhal_1743 NC_013960.1 1771282 1772277 D PFAM: peptidase M48 Ste24p; peptidase M56 BlaR1; KEGG: noc:Noc_0291 hypothetical protein; peptidase M48 Ste24p 1771282..1772277 Nitrosococcus halophilus Nc4 8916731 YP_003527255.1 CDS Nhal_1744 NC_013960.1 1772281 1773585 D PFAM: outer membrane efflux protein; KEGG: noc:Noc_0292 outer membrane efflux protein; outer membrane efflux protein 1772281..1773585 Nitrosococcus halophilus Nc4 8916732 YP_003527256.1 CDS Nhal_1745 NC_013960.1 1773582 1775129 D TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: noc:Noc_0293 secretion protein HlyD; RND family efflux transporter MFP subunit 1773582..1775129 Nitrosococcus halophilus Nc4 8916733 YP_003527257.1 CDS Nhal_1746 NC_013960.1 1775137 1778244 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: noc:Noc_0294 heavy metal efflux pump; CzcA family heavy metal efflux pump 1775137..1778244 Nitrosococcus halophilus Nc4 8916734 YP_003527258.1 CDS Nhal_1747 NC_013960.1 1778228 1778410 D KEGG: afr:AFE_0072 hypothetical protein; hypothetical protein 1778228..1778410 Nitrosococcus halophilus Nc4 8916735 YP_003527259.1 CDS Nhal_1748 NC_013960.1 1778411 1778683 D KEGG: rpe:RPE_2423 hypothetical protein; hypothetical protein 1778411..1778683 Nitrosococcus halophilus Nc4 8916736 YP_003527260.1 CDS Nhal_1749 NC_013960.1 1779009 1779410 D hypothetical protein 1779009..1779410 Nitrosococcus halophilus Nc4 8916737 YP_003527261.1 CDS Nhal_1751 NC_013960.1 1779767 1780276 D KEGG: nmu:Nmul_A1179 hypothetical protein; hypothetical protein 1779767..1780276 Nitrosococcus halophilus Nc4 8916739 YP_003527262.1 CDS Nhal_1752 NC_013960.1 1780353 1781387 D PFAM: O-methyltransferase family 2; KEGG: nmu:Nmul_A1178 O-methyltransferase family protein; O-methyltransferase family 2 1780353..1781387 Nitrosococcus halophilus Nc4 8916740 YP_003527263.1 CDS Nhal_1754 NC_013960.1 1782176 1785346 R TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: smd:Smed_4361 hydrophobe/amphiphile efflux-1 (HAE1) family protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter complement(1782176..1785346) Nitrosococcus halophilus Nc4 8916742 YP_003527264.1 CDS Nhal_1755 NC_013960.1 1785343 1786470 R TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: bcs:BCAN_B0337 RND family efflux transporter MFP subunit; RND family efflux transporter MFP subunit complement(1785343..1786470) Nitrosococcus halophilus Nc4 8916743 YP_003527265.1 CDS Nhal_1757 NC_013960.1 1787021 1787755 R PFAM: IS1 transposase; KEGG: prw:PsycPRwf_1938 IS1 transposase; IS1 transposase complement(1787021..1787755) Nitrosococcus halophilus Nc4 8916745 YP_003527266.1 CDS Nhal_1758 NC_013960.1 1788112 1789674 R PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase; KEGG: maq:Maqu_3283 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase complement(1788112..1789674) Nitrosococcus halophilus Nc4 8916746 YP_003527267.1 CDS Nhal_1759 NC_013960.1 1789744 1791300 R PFAM: FAD linked oxidase; KEGG: noc:Noc_2406 FAD linked oxidase-like; FAD linked oxidase complement(1789744..1791300) Nitrosococcus halophilus Nc4 8916747 YP_003527268.1 CDS Nhal_1760 NC_013960.1 1791313 1792026 R KEGG: noc:Noc_2407 hypothetical protein; hypothetical protein complement(1791313..1792026) Nitrosococcus halophilus Nc4 8916748 YP_003527269.1 CDS Nhal_1761 NC_013960.1 1792016 1792480 R KEGG: noc:Noc_2408 cytochrome C, class I; hypothetical protein complement(1792016..1792480) Nitrosococcus halophilus Nc4 8916749 YP_003527270.1 CDS Nhal_1762 NC_013960.1 1792517 1794352 R TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA; DSBA oxidoreductase; KEGG: nmu:Nmul_A1537 Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA complement(1792517..1794352) Nitrosococcus halophilus Nc4 8916750 YP_003527271.1 CDS Nhal_1763 NC_013960.1 1794469 1795401 R PFAM: aldehyde dehydrogenase; KEGG: pag:PLES_52851 aldehyde dehydrogenase; aldehyde dehydrogenase complement(1794469..1795401) Nitrosococcus halophilus Nc4 8916751 YP_003527272.1 CDS Nhal_1764 NC_013960.1 1795552 1796292 R PFAM: intradiol ring-cleavage dioxygenase; KEGG: noc:Noc_2416 intradiol ring-cleavage dioxygenase; intradiol ring-cleavage dioxygenase complement(1795552..1796292) Nitrosococcus halophilus Nc4 8916752 YP_003527273.1 CDS Nhal_1765 NC_013960.1 1796370 1797284 R KEGG: nmu:Nmul_A1224 hypothetical protein; hypothetical protein complement(1796370..1797284) Nitrosococcus halophilus Nc4 8916753 YP_003527274.1 CDS Nhal_1766 NC_013960.1 1797324 1797926 R TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; NADPH-dependent FMN reductase; KEGG: noc:Noc_2414 flavoprotein WrbA; flavoprotein WrbA complement(1797324..1797926) Nitrosococcus halophilus Nc4 8916754 YP_003527275.1 CDS Nhal_1767 NC_013960.1 1797969 1798091 R hypothetical protein complement(1797969..1798091) Nitrosococcus halophilus Nc4 8916755 YP_003527276.1 CDS Nhal_1768 NC_013960.1 1798103 1798927 R PFAM: extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: noc:Noc_2413 extradiol ring-cleavage dioxygenase III subunit B; extradiol ring-cleavage dioxygenase class III protein subunit B complement(1798103..1798927) Nitrosococcus halophilus Nc4 8916756 YP_003527277.1 CDS Nhal_1769 NC_013960.1 1799057 1799521 R PFAM: DoxX family protein; KEGG: noc:Noc_2411 DoxX-like; DoxX family protein complement(1799057..1799521) Nitrosococcus halophilus Nc4 8916757 YP_003527278.1 CDS Nhal_1770 NC_013960.1 1799628 1800575 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: noc:Noc_2410 LysR family transcriptional regulator; LysR family transcriptional regulator 1799628..1800575 Nitrosococcus halophilus Nc4 8916758 YP_003527279.1 CDS Nhal_1771 NC_013960.1 1800602 1801960 R PFAM: monooxygenase FAD-binding; KEGG: scl:sce4847 hypothetical protein; monooxygenase FAD-binding protein complement(1800602..1801960) Nitrosococcus halophilus Nc4 8916759 YP_003527280.1 CDS Nhal_1772 NC_013960.1 1802081 1802707 R KEGG: noc:Noc_2933 hypothetical protein; hypothetical protein complement(1802081..1802707) Nitrosococcus halophilus Nc4 8916760 YP_003527281.1 CDS Nhal_1773 NC_013960.1 1802887 1803933 D PFAM: Haemin-degrading family protein; KEGG: noc:Noc_2932 hemin transporter HmuS; hemin-degrading family protein 1802887..1803933 Nitrosococcus halophilus Nc4 8916761 YP_003527282.1 CDS Nhal_1774 NC_013960.1 1803938 1804585 D PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: noc:Noc_2926 UbiE/COQ5 methyltransferase; type 11 methyltransferase 1803938..1804585 Nitrosococcus halophilus Nc4 8916762 YP_003527283.1 CDS Nhal_1775 NC_013960.1 1804653 1805054 R PFAM: protein of unknown function DUF1523; KEGG: noc:Noc_2925 hypothetical protein; hypothetical protein complement(1804653..1805054) Nitrosococcus halophilus Nc4 8916763 YP_003527284.1 CDS Nhal_1776 NC_013960.1 1805402 1805785 D PFAM: membrane-flanked domain; KEGG: noc:Noc_0162 hypothetical protein; hypothetical protein 1805402..1805785 Nitrosococcus halophilus Nc4 8916764 YP_003527285.1 CDS Nhal_1777 NC_013960.1 1805789 1806088 D KEGG: noc:Noc_0163 hypothetical protein; hypothetical protein 1805789..1806088 Nitrosococcus halophilus Nc4 8916765 YP_003527286.1 CDS Nhal_1778 NC_013960.1 1806029 1807708 R TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; KEGG: afw:Anae109_2027 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase complement(1806029..1807708) Nitrosococcus halophilus Nc4 8916766 YP_003527287.1 CDS Nhal_1779 NC_013960.1 1807821 1808099 R KEGG: gsu:GSU0187 hypothetical protein; hypothetical protein complement(1807821..1808099) Nitrosococcus halophilus Nc4 8916767 YP_003527288.1 CDS Nhal_1780 NC_013960.1 1808523 1809863 D KEGG: abo:ABO_1817 L-lysine 2,3-aminomutase; L-lysine 2,3-aminomutase 1808523..1809863 Nitrosococcus halophilus Nc4 8916768 YP_003527289.1 CDS Nhal_1781 NC_013960.1 1809886 1811625 R TIGRFAM: sulfate transporter; PFAM: sulfate transporter; sulfate transporter/antisigma-factor antagonist STAS; xanthine/uracil/vitamin C permease; KEGG: aeh:Mlg_1307 sulfate transporter; sulfate transporter complement(1809886..1811625) Nitrosococcus halophilus Nc4 8916769 YP_003527290.1 CDS Nhal_1782 NC_013960.1 1811989 1813950 D PFAM: iron permease FTR1; cytochrome C class I; KEGG: noc:Noc_0164 high-affinity Fe2+/Pb2+ permease; iron permease FTR1 1811989..1813950 Nitrosococcus halophilus Nc4 8916770 YP_003527291.1 CDS Nhal_1783 NC_013960.1 1814181 1814408 D KEGG: noc:Noc_1820 TonB-dependent receptor; TonB-dependent receptor 1814181..1814408 Nitrosococcus halophilus Nc4 8916771 YP_003527292.1 CDS Nhal_1784 NC_013960.1 1814405 1816066 D KEGG: abo:ABO_2095 multidrug transporter membrane component/ATP-binding component; TIGRFAM: cyclic peptide transporter; PFAM: ABC transporter related; SMART: ATPase AAA; cyclic peptide transporter 1814405..1816066 Nitrosococcus halophilus Nc4 8916772 YP_003527293.1 CDS Nhal_1785 NC_013960.1 1816166 1816369 D PFAM: MbtH domain protein; KEGG: abo:ABO_2094 MbtH-family protein; MbtH domain-containing protein 1816166..1816369 Nitrosococcus halophilus Nc4 8916773 YP_003527294.1 CDS Nhal_1786 NC_013960.1 1816410 1827236 D TIGRFAM: amino acid adenylation protein; non-ribosomal peptide synthase; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: abo:ABO_2093 peptide synthetase; amino acid adenylation protein 1816410..1827236 Nitrosococcus halophilus Nc4 8916774 YP_003527295.1 CDS Nhal_1787 NC_013960.1 1827233 1832614 D TIGRFAM: amino acid adenylation protein; PFAM: AMP-dependent synthetase and ligase; thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: abo:ABO_2092 peptide synthetase; amino acid adenylation protein 1827233..1832614 Nitrosococcus halophilus Nc4 8916775 YP_003527296.1 CDS Nhal_1788 NC_013960.1 1832741 1833739 D KEGG: abo:ABO_2090 siderophore biosynthesis protein; siderophore biosynthesis protein 1832741..1833739 Nitrosococcus halophilus Nc4 8916776 YP_003527297.1 CDS Nhal_1789 NC_013960.1 1833778 1835079 D KEGG: abo:ABO_2089 L-ornithine N5-oxygenase; L-lysine 6-monooxygenase (NADPH) 1833778..1835079 Nitrosococcus halophilus Nc4 8916777 YP_003527298.1 CDS Nhal_1790 NC_013960.1 1835086 1835856 D PFAM: ferric iron reductase; KEGG: abo:ABO_2088 ferric iron reductase protein; ferric iron reductase 1835086..1835856 Nitrosococcus halophilus Nc4 8916778 YP_003527299.1 CDS Nhal_1791 NC_013960.1 1835862 1836566 R PFAM: 4'-phosphopantetheinyl transferase; KEGG: pfo:Pfl01_4243 4'-phosphopantetheinyl transferase; 4'-phosphopantetheinyl transferase complement(1835862..1836566) Nitrosococcus halophilus Nc4 8916779 YP_003527300.1 CDS Nhal_1792 NC_013960.1 1836719 1839097 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; Secretin/TonB short domain; KEGG: nwi:Nwi_2881 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 1836719..1839097 Nitrosococcus halophilus Nc4 8916780 YP_003527301.1 CDS Nhal_1793 NC_013960.1 1839113 1840363 D PFAM: PepSY-associated TM helix domain protein; KEGG: nmu:Nmul_A1822 PepSY-associated TM helix; PepSY-associated TM helix domain-containing protein 1839113..1840363 Nitrosococcus halophilus Nc4 8916781 YP_003527302.1 CDS Nhal_1794 NC_013960.1 1840397 1840504 D hypothetical protein 1840397..1840504 Nitrosococcus halophilus Nc4 8916782 YP_003527303.1 CDS Nhal_1795 NC_013960.1 1840611 1841546 D TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: bcs:BCAN_A1707 TonB-system energizer ExbB; tonB-system energizer ExbB 1840611..1841546 Nitrosococcus halophilus Nc4 8916783 YP_003527304.1 CDS Nhal_1796 NC_013960.1 1841552 1841992 D TIGRFAM: TonB system transporter ExbD; PFAM: biopolymertransporter ExbD/TolR; KEGG: pla:Plav_0374 TonB system transporter ExbD type-1; TonB system transporter ExbD 1841552..1841992 Nitrosococcus halophilus Nc4 8916784 YP_003527305.1 CDS Nhal_1797 NC_013960.1 1842010 1842792 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: rpc:RPC_0938 TonB-like; TonB family protein 1842010..1842792 Nitrosococcus halophilus Nc4 8916785 YP_003527306.1 CDS Nhal_1798 NC_013960.1 1842869 1844674 D PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: noc:Noc_0115 ABC transporter transmembrane region; ABC transporter 1842869..1844674 Nitrosococcus halophilus Nc4 8916786 YP_003527307.1 CDS Nhal_1799 NC_013960.1 1844735 1846543 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; KEGG: tbd:Tbd_0715 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(1844735..1846543) Nitrosococcus halophilus Nc4 8916787 YP_003527308.1 CDS Nhal_1800 NC_013960.1 1846518 1847801 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: afr:AFE_1023 HNH endonuclease domain protein; HNH endonuclease complement(1846518..1847801) Nitrosococcus halophilus Nc4 8916788 YP_003527309.1 CDS Nhal_1801 NC_013960.1 1847794 1848552 R KEGG: psp:PSPPH_1484 TonB-dependent siderophore receptor; hypothetical protein complement(1847794..1848552) Nitrosococcus halophilus Nc4 8916789 YP_003527310.1 CDS Nhal_1802 NC_013960.1 1848702 1850375 R KEGG: noc:Noc_0857 hypothetical protein; hypothetical protein complement(1848702..1850375) Nitrosococcus halophilus Nc4 8916790 YP_003527311.1 CDS Nhal_1803 NC_013960.1 1850459 1850749 R KEGG: noc:Noc_0858 hypothetical protein; hypothetical protein complement(1850459..1850749) Nitrosococcus halophilus Nc4 8916791 YP_003527312.1 CDS Nhal_1804 NC_013960.1 1850742 1850918 R hypothetical protein complement(1850742..1850918) Nitrosococcus halophilus Nc4 8916792 YP_003527313.1 CDS Nhal_1805 NC_013960.1 1851013 1853010 R TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: noc:Noc_0859 TonB-dependent haemoglobin/transferrin/lactoferrin receptor; TonB-dependent heme/hemoglobin receptor family protein complement(1851013..1853010) Nitrosococcus halophilus Nc4 8916793 YP_003527314.1 CDS Nhal_1806 NC_013960.1 1853248 1853478 D hypothetical protein 1853248..1853478 Nitrosococcus halophilus Nc4 8916794 YP_003527315.1 CDS Nhal_1807 NC_013960.1 1853819 1856101 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mca:MCA2074 TonB domain-containing protein; TonB-dependent receptor complement(1853819..1856101) Nitrosococcus halophilus Nc4 8916795 YP_003527316.1 CDS Nhal_1808 NC_013960.1 1856574 1858637 R TIGRFAM: ATPase P; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: rpe:RPE_3876 ATPase P; ATPase P complement(1856574..1858637) Nitrosococcus halophilus Nc4 8916796 YP_003527317.1 CDS Nhal_1809 NC_013960.1 1858661 1859284 R KEGG: mxa:MXAN_6815 hypothetical protein; hypothetical protein complement(1858661..1859284) Nitrosococcus halophilus Nc4 8916797 YP_003527318.1 CDS Nhal_1810 NC_013960.1 1859305 1860456 R PFAM: metallophosphoesterase; KEGG: afw:Anae109_2854 metallophosphoesterase; metallophosphoesterase complement(1859305..1860456) Nitrosococcus halophilus Nc4 8916798 YP_003527319.1 CDS Nhal_1811 NC_013960.1 1860456 1861775 R PFAM: Di-haem cytochrome C peroxidase; KEGG: mca:MCA0318 SCO1/SenC family protein/methylamine utilization protein MauG; cytochrome-c peroxidase complement(1860456..1861775) Nitrosococcus halophilus Nc4 8916799 YP_003527320.1 CDS Nhal_1812 NC_013960.1 1861866 1862294 R PFAM: protein of unknown function DUF29; KEGG: noc:Noc_0766 hypothetical protein; hypothetical protein complement(1861866..1862294) Nitrosococcus halophilus Nc4 8916800 YP_003527321.1 CDS Nhal_1813 NC_013960.1 1862353 1864044 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1279 NADH/ubiquinone/plastoquinone (complex I); NADH/Ubiquinone/plastoquinone (complex I) complement(1862353..1864044) Nitrosococcus halophilus Nc4 8916801 YP_003527322.1 CDS Nhal_1814 NC_013960.1 1864041 1865546 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1280 NADH dehydrogenase (quinone); NADH/Ubiquinone/plastoquinone (complex I) complement(1864041..1865546) Nitrosococcus halophilus Nc4 8916802 YP_003527323.1 CDS Nhal_1815 NC_013960.1 1865543 1867033 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1281 NADH dehydrogenase (quinone); NADH/Ubiquinone/plastoquinone (complex I) complement(1865543..1867033) Nitrosococcus halophilus Nc4 8916803 YP_003527324.1 CDS Nhal_1816 NC_013960.1 1867199 1867516 R PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: noc:Noc_1282 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase chain 4L complement(1867199..1867516) Nitrosococcus halophilus Nc4 8916804 YP_003527325.1 CDS Nhal_1817 NC_013960.1 1867513 1868214 R KEGG: noc:Noc_1283 hypothetical protein; hypothetical protein complement(1867513..1868214) Nitrosococcus halophilus Nc4 8916805 YP_003527326.1 CDS Nhal_1818 NC_013960.1 1868198 1868488 R KEGG: noc:Noc_1284 hypothetical protein; hypothetical protein complement(1868198..1868488) Nitrosococcus halophilus Nc4 8916806 YP_003527327.1 CDS Nhal_1819 NC_013960.1 1868485 1868799 R TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: noc:Noc_1285 monovalent cation/H+ antiporter subunit G; monovalent cation/proton antiporter, MnhG/PhaG subunit complement(1868485..1868799) Nitrosococcus halophilus Nc4 8916807 YP_003527328.1 CDS Nhal_1820 NC_013960.1 1868792 1869070 R PFAM: multiple resistance and pH regulation protein F; KEGG: noc:Noc_1286 multiple resistance and pH regulation protein F; multiple resistance and pH regulation protein F complement(1868792..1869070) Nitrosococcus halophilus Nc4 8916808 YP_003527329.1 CDS Nhal_1821 NC_013960.1 1869057 1869614 R PFAM: cation antiporter; KEGG: noc:Noc_1287 cation antiporter; cation antiporter complement(1869057..1869614) Nitrosococcus halophilus Nc4 8916809 YP_003527330.1 CDS Nhal_1822 NC_013960.1 1869629 1869892 R hypothetical protein complement(1869629..1869892) Nitrosococcus halophilus Nc4 8916810 YP_003527331.1 CDS Nhal_1823 NC_013960.1 1870107 1871042 D PFAM: UspA domain protein; KEGG: noc:Noc_1288 universal stress protein UspA; UspA domain-containing protein 1870107..1871042 Nitrosococcus halophilus Nc4 8916811 YP_003527332.1 CDS Nhal_1824 NC_013960.1 1871505 1872788 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: afr:AFE_1023 HNH endonuclease domain protein; HNH endonuclease complement(1871505..1872788) Nitrosococcus halophilus Nc4 8916812 YP_003527333.1 CDS Nhal_1825 NC_013960.1 1873048 1874337 R KEGG: noc:Noc_1405 hypothetical protein; hypothetical protein complement(1873048..1874337) Nitrosococcus halophilus Nc4 8916813 YP_003527334.1 CDS Nhal_1826 NC_013960.1 1874488 1877751 D KEGG: noc:Noc_1406 cation transport ATPase; TIGRFAM: ATPase P; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; haloacid dehalogenase; peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; ATPase P 1874488..1877751 Nitrosococcus halophilus Nc4 8916814 YP_003527335.1 CDS Nhal_1827 NC_013960.1 1877865 1878524 D KEGG: noc:Noc_1407 hypothetical protein; hypothetical protein 1877865..1878524 Nitrosococcus halophilus Nc4 8916815 YP_003527336.1 CDS Nhal_1828 NC_013960.1 1878685 1879800 D PFAM: protein of unknown function UPF0118; KEGG: noc:Noc_1408 hypothetical protein; hypothetical protein 1878685..1879800 Nitrosococcus halophilus Nc4 8916816 YP_003527337.1 CDS Nhal_1829 NC_013960.1 1880122 1881807 D PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: hha:Hhal_1863 sodium/hydrogen exchanger; sodium/hydrogen exchanger 1880122..1881807 Nitrosococcus halophilus Nc4 8916817 YP_003527338.1 CDS Nhal_1830 NC_013960.1 1881861 1882727 D PFAM: UspA domain protein; KEGG: hha:Hhal_0267 UspA domain-containing protein; UspA domain-containing protein 1881861..1882727 Nitrosococcus halophilus Nc4 8916818 YP_003527339.1 CDS Nhal_1831 NC_013960.1 1882768 1883214 R PFAM: UspA domain protein; KEGG: noc:Noc_1409 universal stress protein UspA-like nucleotide-binding protein; UspA domain-containing protein complement(1882768..1883214) Nitrosococcus halophilus Nc4 8916819 YP_003527340.1 CDS Nhal_1832 NC_013960.1 1883343 1884545 R PFAM: NnrS family protein; KEGG: noc:Noc_1410 NnrS-like protein; NnrS family protein complement(1883343..1884545) Nitrosococcus halophilus Nc4 8916820 YP_003527341.1 CDS Nhal_1833 NC_013960.1 1884697 1885161 D TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: noc:Noc_1411 bacterioferritin; bacterioferritin 1884697..1885161 Nitrosococcus halophilus Nc4 8916821 YP_003527342.1 CDS Nhal_1834 NC_013960.1 1885233 1886447 R PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll2640 major facilitator superfamily transporter; major facilitator superfamily protein complement(1885233..1886447) Nitrosococcus halophilus Nc4 8916822 YP_003527343.1 CDS Nhal_1835 NC_013960.1 1886640 1887698 D PFAM: protein of unknown function UPF0118; KEGG: noc:Noc_1450 hypothetical protein; hypothetical protein 1886640..1887698 Nitrosococcus halophilus Nc4 8916823 YP_003527344.1 CDS Nhal_1836 NC_013960.1 1887863 1888932 D KEGG: mch:Mchl_5622 transposase and inactivated derivatives-like protein; hypothetical protein join(1887863..1888351,1888351..1888932) Nitrosococcus halophilus Nc4 8916824 YP_003527345.1 CDS Nhal_1837 NC_013960.1 1889194 1889322 D hypothetical protein 1889194..1889322 Nitrosococcus halophilus Nc4 8916825 YP_003527346.1 CDS Nhal_1838 NC_013960.1 1889564 1889818 D PFAM: MbtH domain protein; KEGG: cja:CJA_1874 MbtH-like protein-related protein; MbtH domain-containing protein 1889564..1889818 Nitrosococcus halophilus Nc4 8916826 YP_003527347.1 CDS Nhal_1840 NC_013960.1 1892393 1892587 D hypothetical protein 1892393..1892587 Nitrosococcus halophilus Nc4 8916828 YP_003527348.1 CDS Nhal_1841 NC_013960.1 1892580 1892696 R hypothetical protein complement(1892580..1892696) Nitrosococcus halophilus Nc4 8916829 YP_003527349.1 CDS Nhal_1844 NC_013960.1 1894177 1895466 R KEGG: noc:Noc_1405 hypothetical protein; hypothetical protein complement(1894177..1895466) Nitrosococcus halophilus Nc4 8916832 YP_003527350.1 CDS Nhal_1845 NC_013960.1 1895617 1898880 D KEGG: noc:Noc_1406 cation transport ATPase; TIGRFAM: ATPase P; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; haloacid dehalogenase; peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; ATPase P 1895617..1898880 Nitrosococcus halophilus Nc4 8916833 YP_003527351.1 CDS Nhal_1846 NC_013960.1 1898994 1899653 D KEGG: noc:Noc_1407 hypothetical protein; hypothetical protein 1898994..1899653 Nitrosococcus halophilus Nc4 8916834 YP_003527352.1 CDS Nhal_1847 NC_013960.1 1899814 1900929 D PFAM: protein of unknown function UPF0118; KEGG: noc:Noc_1408 hypothetical protein; hypothetical protein 1899814..1900929 Nitrosococcus halophilus Nc4 8916835 YP_003527353.1 CDS Nhal_1848 NC_013960.1 1901251 1902936 D PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: hha:Hhal_1863 sodium/hydrogen exchanger; sodium/hydrogen exchanger 1901251..1902936 Nitrosococcus halophilus Nc4 8916836 YP_003527354.1 CDS Nhal_1849 NC_013960.1 1902990 1903856 D PFAM: UspA domain protein; KEGG: hha:Hhal_0267 UspA domain-containing protein; UspA domain-containing protein 1902990..1903856 Nitrosococcus halophilus Nc4 8916837 YP_003527355.1 CDS Nhal_1850 NC_013960.1 1903897 1904343 R PFAM: UspA domain protein; KEGG: noc:Noc_1409 universal stress protein UspA-like nucleotide-binding protein; UspA domain-containing protein complement(1903897..1904343) Nitrosococcus halophilus Nc4 8916838 YP_003527356.1 CDS Nhal_1851 NC_013960.1 1904472 1905674 R PFAM: NnrS family protein; KEGG: noc:Noc_1410 NnrS-like protein; NnrS family protein complement(1904472..1905674) Nitrosococcus halophilus Nc4 8916839 YP_003527357.1 CDS Nhal_1852 NC_013960.1 1905826 1906290 D TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: noc:Noc_1411 bacterioferritin; bacterioferritin 1905826..1906290 Nitrosococcus halophilus Nc4 8916840 YP_003527358.1 CDS Nhal_1853 NC_013960.1 1906362 1907576 R PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll2640 major facilitator superfamily transporter; major facilitator superfamily protein complement(1906362..1907576) Nitrosococcus halophilus Nc4 8916841 YP_003527359.1 CDS Nhal_1854 NC_013960.1 1907769 1908827 D PFAM: protein of unknown function UPF0118; KEGG: noc:Noc_1450 hypothetical protein; hypothetical protein 1907769..1908827 Nitrosococcus halophilus Nc4 8916842 YP_003527360.1 CDS Nhal_1855 NC_013960.1 1908992 1910061 D KEGG: mch:Mchl_5622 transposase and inactivated derivatives-like protein; hypothetical protein join(1908992..1909480,1909480..1910061) Nitrosococcus halophilus Nc4 8916843 YP_003527361.1 CDS Nhal_1856 NC_013960.1 1910323 1910451 D hypothetical protein 1910323..1910451 Nitrosococcus halophilus Nc4 8916844 YP_003527362.1 CDS Nhal_1857 NC_013960.1 1910693 1910947 D PFAM: MbtH domain protein; KEGG: cja:CJA_1874 MbtH-like protein-related protein; MbtH domain-containing protein 1910693..1910947 Nitrosococcus halophilus Nc4 8916845 YP_003527363.1 CDS Nhal_1859 NC_013960.1 1913522 1913716 D hypothetical protein 1913522..1913716 Nitrosococcus halophilus Nc4 8916847 YP_003527364.1 CDS Nhal_1860 NC_013960.1 1913709 1913825 R hypothetical protein complement(1913709..1913825) Nitrosococcus halophilus Nc4 8916848 YP_003527365.1 CDS Nhal_1863 NC_013960.1 1915389 1915622 D KEGG: aav:Aave_1029 hypothetical protein; hypothetical protein 1915389..1915622 Nitrosococcus halophilus Nc4 8916851 YP_003527366.1 CDS Nhal_1864 NC_013960.1 1915612 1916031 D KEGG: tgr:Tgr7_3220 PilT domain-containing protein; PilT domain-containing protein 1915612..1916031 Nitrosococcus halophilus Nc4 8916852 YP_003527367.1 CDS Nhal_1865 NC_013960.1 1916238 1916741 D KEGG: noc:Noc_0328 BNR repeat-containing protein; BNR repeat-containing protein 1916238..1916741 Nitrosococcus halophilus Nc4 8916853 YP_003527368.1 CDS Nhal_1866 NC_013960.1 1916903 1917118 D hypothetical protein 1916903..1917118 Nitrosococcus halophilus Nc4 8916854 YP_003527369.1 CDS Nhal_1867 NC_013960.1 1917147 1918514 D TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: noc:Noc_0329 HlyD family secretion protein; RND family efflux transporter MFP subunit 1917147..1918514 Nitrosococcus halophilus Nc4 8916855 YP_003527370.1 CDS Nhal_1868 NC_013960.1 1918443 1918853 R KEGG: tgr:Tgr7_3221 hypothetical protein; hypothetical protein complement(1918443..1918853) Nitrosococcus halophilus Nc4 8916856 YP_003527371.1 CDS Nhal_1869 NC_013960.1 1918854 1919078 R TIGRFAM: AbrB family transcriptional regulator; PFAM: SpoVT/AbrB domain protein; KEGG: pla:Plav_2596 AbrB family transcriptional regulator; AbrB family transcriptional regulator complement(1918854..1919078) Nitrosococcus halophilus Nc4 8916857 YP_003527372.1 CDS Nhal_1870 NC_013960.1 1919313 1920650 D KEGG: ppd:Ppro_1373 hypothetical protein; hypothetical protein 1919313..1920650 Nitrosococcus halophilus Nc4 8916858 YP_003527373.1 CDS Nhal_1871 NC_013960.1 1920653 1923397 D KEGG: glo:Glov_1145 DNA mismatch repair protein MutS; TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS IV domain protein; MutS III domain protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; DNA mismatch repair protein MutS 1920653..1923397 Nitrosococcus halophilus Nc4 8916859 YP_003527374.1 CDS Nhal_1872 NC_013960.1 1923394 1924977 D TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; KEGG: glo:Glov_0993 DNA mismatch repair protein; DNA mismatch repair protein MutL 1923394..1924977 Nitrosococcus halophilus Nc4 8916860 YP_003527375.1 CDS Nhal_1873 NC_013960.1 1925041 1925898 R PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: noc:Noc_2077 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase NAD-binding protein complement(1925041..1925898) Nitrosococcus halophilus Nc4 8916861 YP_003527376.1 CDS Nhal_1874 NC_013960.1 1925922 1926968 R PFAM: metallophosphoesterase; KEGG: sme:SMc00171 hypothetical protein; metallophosphoesterase complement(1925922..1926968) Nitrosococcus halophilus Nc4 8916862 YP_003527377.1 CDS Nhal_1875 NC_013960.1 1927087 1930038 R PFAM: peptidase M16C associated domain protein; peptidase M16 domain protein; KEGG: noc:Noc_2076 peptidase M16-like; peptidase M16C associated domain-containing protein complement(1927087..1930038) Nitrosococcus halophilus Nc4 8916863 YP_003527378.1 CDS Nhal_1876 NC_013960.1 1930078 1930818 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: noc:Noc_2075 HAD family hydrolase; HAD-superfamily hydrolase complement(1930078..1930818) Nitrosococcus halophilus Nc4 8916864 YP_003527379.1 CDS Nhal_1877 NC_013960.1 1930828 1931697 R PFAM: Hsp33 protein; KEGG: noc:Noc_2074 HSP33 protein; Hsp33 protein complement(1930828..1931697) Nitrosococcus halophilus Nc4 8916865 YP_003527380.1 CDS Nhal_1878 NC_013960.1 1931831 1931986 D hypothetical protein 1931831..1931986 Nitrosococcus halophilus Nc4 8916866 YP_003527381.1 CDS Nhal_1879 NC_013960.1 1932268 1932441 R hypothetical protein complement(1932268..1932441) Nitrosococcus halophilus Nc4 8916867 YP_003527382.1 CDS Nhal_1880 NC_013960.1 1932589 1934325 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 1.2; sigma-70 non-essential domain protein; sigma-70 region 4 domain protein; KEGG: noc:Noc_2066 hypothetical protein; sigma-70 family RNA polymerase sigma factor complement(1932589..1934325) Nitrosococcus halophilus Nc4 8916868 YP_003527383.1 CDS Nhal_1883 NC_013960.1 1936416 1936838 D PFAM: protein of unknown function DUF101; KEGG: avn:Avin_46270 hypothetical protein; hypothetical protein 1936416..1936838 Nitrosococcus halophilus Nc4 8916871 YP_003527384.1 CDS Nhal_1884 NC_013960.1 1936845 1938275 D PFAM: protein of unknown function UPF0027; KEGG: tgr:Tgr7_1950 protein of unknown function UPF0027; hypothetical protein 1936845..1938275 Nitrosococcus halophilus Nc4 8916872 YP_003527385.1 CDS Nhal_1885 NC_013960.1 1938333 1938791 D PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: mxa:MXAN_7380 CBS domain-containing protein; CBS domain-containing protein 1938333..1938791 Nitrosococcus halophilus Nc4 8916873 YP_003527386.1 CDS Nhal_1886 NC_013960.1 1939009 1939203 R hypothetical protein complement(1939009..1939203) Nitrosococcus halophilus Nc4 8916874 YP_003527387.1 CDS Nhal_1887 NC_013960.1 1939298 1939756 R KEGG: noc:Noc_2435 hypothetical protein; hypothetical protein complement(1939298..1939756) Nitrosococcus halophilus Nc4 8916875 YP_003527388.1 CDS Nhal_1888 NC_013960.1 1939976 1940704 D PFAM: cyclase family protein; KEGG: rsq:Rsph17025_3859 hypothetical protein; cyclase family protein 1939976..1940704 Nitrosococcus halophilus Nc4 8916876 YP_003527389.1 CDS Nhal_1889 NC_013960.1 1940771 1941454 R PFAM: nitroreductase; KEGG: sfu:Sfum_0229 nitroreductase; nitroreductase complement(1940771..1941454) Nitrosococcus halophilus Nc4 8916877 YP_003527390.1 CDS Nhal_1890 NC_013960.1 1941480 1942016 R KEGG: gur:Gura_2940 hypothetical protein; hypothetical protein complement(1941480..1942016) Nitrosococcus halophilus Nc4 8916878 YP_003527391.1 CDS Nhal_1891 NC_013960.1 1942207 1946295 R KEGG: psa:PST_3560 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: MCP methyltransferase CheR-type; CheB methylesterase; response regulator receiver; hypothetical protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: MCP methyltransferase CheR-type; histidine kinase A domain protein; response regulator receiver; PAS domain containing protein; ATP-binding region ATPase domain protein; PAS sensor protein complement(1942207..1946295) Nitrosococcus halophilus Nc4 8916879 YP_003527392.1 CDS Nhal_1892 NC_013960.1 1946831 1947550 R PFAM: LuxR family transcriptional regulator; Sigma-70 region 4 type 2; response regulator receiver; SMART: LuxR family transcriptional regulator; response regulator receiver; KEGG: noc:Noc_0276 two component transcription LuxR family regulatory protein; LuxR family transcriptional regulator complement(1946831..1947550) Nitrosococcus halophilus Nc4 8916880 YP_003527393.1 CDS Nhal_1893 NC_013960.1 1947601 1947936 R KEGG: noc:Noc_1602 hypothetical protein; hypothetical protein complement(1947601..1947936) Nitrosococcus halophilus Nc4 8916881 YP_003527394.1 CDS Nhal_1894 NC_013960.1 1948185 1948409 D KEGG: GA28241 gene product from transcript GA28241-RA; hypothetical protein 1948185..1948409 Nitrosococcus halophilus Nc4 8916882 YP_003527395.1 CDS Nhal_1895 NC_013960.1 1948441 1949706 D KEGG: sfu:Sfum_0366 adenosylhomocysteinase; TIGRFAM: adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; S-adenosyl-L-homocysteine hydrolase; adenosylhomocysteinase 1948441..1949706 Nitrosococcus halophilus Nc4 8916883 YP_003527396.1 CDS Nhal_1896 NC_013960.1 1950224 1957843 D TIGRFAM: hypothetical protein; PFAM: NHL repeat containing protein; hypothetical protein; KEGG: ank:AnaeK_1325 hypothetical protein; hypothetical protein 1950224..1957843 Nitrosococcus halophilus Nc4 8916884 YP_003527397.1 CDS Nhal_1898 NC_013960.1 1958907 1959338 D PFAM: transposase IS200-family protein; KEGG: cps:CPS_1800 ISCps10, transposase; transposase IS200-family protein 1958907..1959338 Nitrosococcus halophilus Nc4 8916886 YP_003527398.1 CDS Nhal_1899 NC_013960.1 1959401 1959757 D hypothetical protein 1959401..1959757 Nitrosococcus halophilus Nc4 8916887 YP_003527399.1 CDS Nhal_1900 NC_013960.1 1959812 1960303 D KEGG: bvi:Bcep1808_7013 RNA-directed DNA polymerase (reverse transcriptase); Retron-type reverse transcriptase-like protein 1959812..1960303 Nitrosococcus halophilus Nc4 8916888 YP_003527400.1 CDS Nhal_1901 NC_013960.1 1960341 1961564 D PFAM: transposase mutator type; KEGG: son:SO_0708 transposase mutator family protein; transposase mutator type 1960341..1961564 Nitrosococcus halophilus Nc4 8916889 YP_003527401.1 CDS Nhal_1902 NC_013960.1 1961572 1962036 R hypothetical protein complement(1961572..1962036) Nitrosococcus halophilus Nc4 8916890 YP_003527402.1 CDS Nhal_1904 NC_013960.1 1962635 1963519 R TIGRFAM: alternate F1F0 ATPase, F1 subunit gamma; PFAM: H+transporting two-sector ATPase subunit gamma; KEGG: pna:Pnap_2328 H+-transporting two-sector ATPase, subunit gamma; alternate F1F0 ATPase, F1 subunit gamma complement(1962635..1963519) Nitrosococcus halophilus Nc4 8916892 YP_003527403.1 CDS Nhal_1905 NC_013960.1 1963525 1965036 R KEGG: pca:Pcar_2996 F0F1 ATP synthase subunit alpha; TIGRFAM: alternate F1F0 ATPase, F1 subunit alpha; ATP synthase F1 subunit alpha; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; alternate F1F0 ATPase, F1 subunit alpha complement(1963525..1965036) Nitrosococcus halophilus Nc4 8916893 YP_003527404.1 CDS Nhal_1906 NC_013960.1 1965061 1965822 R TIGRFAM: alternate F1F0 ATPase, F0 subunit B; ATP synthase F0 subunit beta; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: rfr:Rfer_1167 H+-transporting two-sector ATPase, B/B' subunit; alternate F1F0 ATPase, F0 subunit B complement(1965061..1965822) Nitrosococcus halophilus Nc4 8916894 YP_003527405.1 CDS Nhal_1907 NC_013960.1 1965826 1966104 R TIGRFAM: alternate F1F0 ATPase, F0 subunit C; ATP synthase F0 C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: mmw:Mmwyl1_1959 F0F1 ATP synthase subunit C; alternate F1F0 ATPase, F0 subunit C complement(1965826..1966104) Nitrosococcus halophilus Nc4 8916895 YP_003527406.1 CDS Nhal_1908 NC_013960.1 1966104 1966835 R TIGRFAM: alternate F1F0 ATPase, F0 subunit A; ATP synthase F0 subunit alpha; PFAM: H+transporting two-sector ATPase subunit alpha; KEGG: sat:SYN_02101 F0F1 ATP synthase subunit A; alternate F1F0 ATPase, F0 subunit A complement(1966104..1966835) Nitrosococcus halophilus Nc4 8916896 YP_003527407.1 CDS Nhal_1909 NC_013960.1 1966832 1967989 R KEGG: gme:Gmet_1014 peptidase S1C, Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; HtrA2 peptidase complement(1966832..1967989) Nitrosococcus halophilus Nc4 8916897 YP_003527408.1 CDS Nhal_1910 NC_013960.1 1973835 1975676 D PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: hch:HCH_00591 ABC-type multidrug transporter, ATPase and permeases; multidrug ABC transporter ATPase/permease 1973835..1975676 Nitrosococcus halophilus Nc4 8916901 YP_003527409.1 CDS Nhal_1911 NC_013960.1 1975772 1977190 D PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase; KEGG: noc:Noc_1682 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 1975772..1977190 Nitrosococcus halophilus Nc4 8916902 YP_003527410.1 CDS Nhal_1912 NC_013960.1 1977251 1978642 D PFAM: aldehyde dehydrogenase; KEGG: dat:HRM2_11640 NAD-dependent aldehyde dehydrogenase; aldehyde dehydrogenase 1977251..1978642 Nitrosococcus halophilus Nc4 8916903 YP_003527411.1 CDS Nhal_1913 NC_013960.1 1978659 1980476 D PFAM: protein of unknown function DUF885; KEGG: mxa:MXAN_2860 hypothetical protein; hypothetical protein 1978659..1980476 Nitrosococcus halophilus Nc4 8916904 YP_003527412.1 CDS Nhal_1914 NC_013960.1 1980553 1980804 D KEGG: hdu:HD0911 HicA protein; HicA protein 1980553..1980804 Nitrosococcus halophilus Nc4 8916905 YP_003527413.1 CDS Nhal_1915 NC_013960.1 1980801 1981265 D PFAM: HicB family protein; KEGG: csa:Csal_1678 HicB; HicB family protein 1980801..1981265 Nitrosococcus halophilus Nc4 8916906 YP_003527414.1 CDS Nhal_1916 NC_013960.1 1981226 1981681 D hypothetical protein 1981226..1981681 Nitrosococcus halophilus Nc4 8916907 YP_003527415.1 CDS Nhal_1917 NC_013960.1 1981705 1981944 R hypothetical protein complement(1981705..1981944) Nitrosococcus halophilus Nc4 8916908 YP_003527416.1 CDS Nhal_1920 NC_013960.1 1983314 1983688 D PFAM: Calcium-binding EF-hand-containing protein; SMART: Calcium-binding EF-hand-containing protein; KEGG: dds:Ddes_2120 signal transduction protein with EFhand domain; calcium-binding EF-hand protein-containing protein 1983314..1983688 Nitrosococcus halophilus Nc4 8916911 YP_003527417.1 CDS Nhal_1921 NC_013960.1 1984105 1985481 D PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: rpb:RPB_0926 phage integrase; integrase family protein 1984105..1985481 Nitrosococcus halophilus Nc4 8916912 YP_003527418.1 CDS Nhal_1923 NC_013960.1 1986573 1986671 D hypothetical protein 1986573..1986671 Nitrosococcus halophilus Nc4 8916914 YP_003527419.1 CDS Nhal_1924 NC_013960.1 1986777 1987826 D KEGG: ftn:FTN_0013 hypothetical protein; hypothetical protein 1986777..1987826 Nitrosococcus halophilus Nc4 8916915 YP_003527420.1 CDS Nhal_1925 NC_013960.1 1988043 1988303 R hypothetical protein complement(1988043..1988303) Nitrosococcus halophilus Nc4 8916916 YP_003527421.1 CDS Nhal_1926 NC_013960.1 1988652 1989704 D TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: noc:Noc_1645 queuosine biosynthesis protein; S-adenosylmethionine/tRNA-ribosyltransferase- isomerase 1988652..1989704 Nitrosococcus halophilus Nc4 8916918 YP_003527422.1 CDS Nhal_1927 NC_013960.1 1989708 1990436 D TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: noc:Noc_1646 RNA methyltransferase TrmH, group 1; TrmH family RNA methyltransferase 1989708..1990436 Nitrosococcus halophilus Nc4 8916919 YP_003527423.1 CDS Nhal_1928 NC_013960.1 1990508 1991317 D KEGG: noc:Noc_1647 serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; serine O-acetyltransferase 1990508..1991317 Nitrosococcus halophilus Nc4 8916920 YP_003527424.1 CDS Nhal_1929 NC_013960.1 1991391 1991891 D TIGRFAM: iron-sulfur cluster assembly transcription factor IscR; Rrf2 family transcriptional regulator; PFAM: protein of unknown function UPF0074; KEGG: noc:Noc_1648 iron-sulphur cluster assembly transcription factor IscR; iron-sulfur cluster assembly transcription factor IscR 1991391..1991891 Nitrosococcus halophilus Nc4 8916921 YP_003527425.1 CDS Nhal_1930 NC_013960.1 1991914 1993059 D PFAM: aminotransferase class V; KEGG: noc:Noc_1649 aminotransferase, class V; Cysteine desulfurase 1991914..1993059 Nitrosococcus halophilus Nc4 8916922 YP_003527426.1 CDS Nhal_1931 NC_013960.1 1993082 1993405 D TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: noc:Noc_1650 HesB/YadR/YfhF; iron-sulfur cluster assembly accessory protein 1993082..1993405 Nitrosococcus halophilus Nc4 8916923 YP_003527427.1 CDS Nhal_1932 NC_013960.1 1993432 1993638 D KEGG: har:HEAR0908 hypothetical protein; hypothetical protein 1993432..1993638 Nitrosococcus halophilus Nc4 8916924 YP_003527428.1 CDS Nhal_1933 NC_013960.1 1993722 1994390 R PFAM: protein of unknown function UPF0005; KEGG: noc:Noc_1654 hypothetical protein; hypothetical protein complement(1993722..1994390) Nitrosococcus halophilus Nc4 8916925 YP_003527429.1 CDS Nhal_1934 NC_013960.1 1994839 1994934 D hypothetical protein 1994839..1994934 Nitrosococcus halophilus Nc4 8916927 YP_003527430.1 CDS Nhal_1935 NC_013960.1 1994974 1996455 D PFAM: protein of unknown function UPF0061; KEGG: noc:Noc_0691 hypothetical protein; hypothetical protein 1994974..1996455 Nitrosococcus halophilus Nc4 8916928 YP_003527431.1 CDS Nhal_1936 NC_013960.1 1997114 1997473 D hypothetical protein 1997114..1997473 Nitrosococcus halophilus Nc4 8916929 YP_003527432.1 CDS Nhal_1937 NC_013960.1 1997503 1998572 D KEGG: mch:Mchl_5622 transposase and inactivated derivatives-like protein; hypothetical protein join(1997503..1997991,1997991..1998572) Nitrosococcus halophilus Nc4 8916930 YP_003527433.1 CDS Nhal_1938 NC_013960.1 1998582 1999850 D PFAM: protein of unknown function DUF839; KEGG: tbd:Tbd_1423 phosphatase; hypothetical protein 1998582..1999850 Nitrosococcus halophilus Nc4 8916931 YP_003527434.1 CDS Nhal_1939 NC_013960.1 1999966 2001651 R KEGG: mno:Mnod_5657 tetratricopeptide TPR_4; hypothetical protein complement(1999966..2001651) Nitrosococcus halophilus Nc4 8916932 YP_003527435.1 CDS Nhal_1940 NC_013960.1 2001776 2002243 D PFAM: cell wall hydrolase SleB; KEGG: ppg:PputGB1_2359 cell wall hydrolase SleB; cell wall hydrolase SleB 2001776..2002243 Nitrosococcus halophilus Nc4 8916933 YP_003527436.1 CDS Nhal_1941 NC_013960.1 2002628 2004820 D KEGG: mca:MCA0657 CRISPR-associated helicase Cas3; TIGRFAM: CRISPR-associated helicase Cas3; PFAM: DEAD/DEAH box helicase domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: DEAD-like helicase; CRISPR-associated helicase Cas3 2002628..2004820 Nitrosococcus halophilus Nc4 8916934 YP_003527437.1 CDS Nhal_1942 NC_013960.1 2004876 2005553 D TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: mca:MCA0656 CRISPR-associated Csd1 family protein; CRISPR-associated protein Cas5 family 2004876..2005553 Nitrosococcus halophilus Nc4 8916935 YP_003527438.1 CDS Nhal_1943 NC_013960.1 2005550 2007298 D TIGRFAM: CRISPR-associated protein, Csd1 family; KEGG: mca:MCA0655 CRISPR-associated Csd1 family protein; CRISPR-associated protein, Csd1 family 2005550..2007298 Nitrosococcus halophilus Nc4 8916936 YP_003527439.1 CDS Nhal_1944 NC_013960.1 2007313 2008197 D TIGRFAM: CRISPR-associated protein, Csd2 family; CRISPR-associated protein, CT1132 family; PFAM: CRISPR-associated protein TM1801; KEGG: mca:MCA0654 CRISPR-associated Csh2 family protein; CRISPR-associated protein, Csd2 family 2007313..2008197 Nitrosococcus halophilus Nc4 8916937 YP_003527440.1 CDS Nhal_1945 NC_013960.1 2008201 2008851 D TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: mca:MCA0652 CRISPR-associated Cas4 family protein; CRISPR-associated protein Cas4 2008201..2008851 Nitrosococcus halophilus Nc4 8916938 YP_003527441.1 CDS Nhal_1946 NC_013960.1 2008836 2009870 D TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: mca:MCA0651 CRISPR-associated Cas1 family protein; CRISPR-associated protein Cas1 2008836..2009870 Nitrosococcus halophilus Nc4 8916939 YP_003527442.1 CDS Nhal_1947 NC_013960.1 2009885 2010175 D TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: mca:MCA0650 CRISPR-associated Cas2 family protein; CRISPR-associated protein Cas2 2009885..2010175 Nitrosococcus halophilus Nc4 8916940 YP_003527443.1 CDS Nhal_1948 NC_013960.1 2010703 2011932 R PFAM: sodium/hydrogen exchanger; KEGG: sun:SUN_0480 NhaA family Na(+)/H(+) antiporter; sodium/hydrogen exchanger complement(2010703..2011932) Nitrosococcus halophilus Nc4 8916941 YP_003527444.1 CDS Nhal_1949 NC_013960.1 2011922 2012242 R TIGRFAM: F0F1-ATPase; KEGG: mmw:Mmwyl1_1956 F0F1-ATPase; F0F1-ATPase complement(2011922..2012242) Nitrosococcus halophilus Nc4 8916942 YP_003527445.1 CDS Nhal_1950 NC_013960.1 2012247 2012645 R TIGRFAM: ATP synthase F1 subunit epsilon; PFAM: H+transporting two-sector ATPase delta/subunit epsilon; KEGG: sat:SYN_02098 F0F1 ATP synthase subunit epsilon; ATP synthase F1 subunit epsilon complement(2012247..2012645) Nitrosococcus halophilus Nc4 8916943 YP_003527446.1 CDS Nhal_1951 NC_013960.1 2012642 2014054 R KEGG: mmw:Mmwyl1_1954 F0F1 ATP synthase subunit beta; TIGRFAM: alternate F1F0 ATPase, F1 subunit beta; ATP synthase F1 beta subunit; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; alternate F1F0 ATPase, F1 subunit beta complement(2012642..2014054) Nitrosococcus halophilus Nc4 8916944 YP_003527447.1 CDS Nhal_1952 NC_013960.1 2014364 2014873 D TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: afr:AFE_0936 hydrogenase maturation protease; hydrogenase maturation protease 2014364..2014873 Nitrosococcus halophilus Nc4 8916945 YP_003527448.1 CDS Nhal_1953 NC_013960.1 2014877 2016307 D TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA; sodium/hydrogen exchanger; KEGG: pca:Pcar_2456 Na+/H+ antiporter; Na+/H+ antiporter NhaA 2014877..2016307 Nitrosococcus halophilus Nc4 8916946 YP_003527449.1 CDS Nhal_1954 NC_013960.1 2016335 2017612 R PFAM: major facilitator superfamily MFS_1; KEGG: noc:Noc_1010 major facilitator transporter; major facilitator superfamily protein complement(2016335..2017612) Nitrosococcus halophilus Nc4 8916947 YP_003527450.1 CDS Nhal_1955 NC_013960.1 2017660 2018874 R PFAM: peptidase M50; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: noc:Noc_1011 peptidase M50; peptidase M50 complement(2017660..2018874) Nitrosococcus halophilus Nc4 8916948 YP_003527451.1 CDS Nhal_1956 NC_013960.1 2019272 2020282 R KEGG: tbd:Tbd_1466 hypothetical protein; hypothetical protein complement(2019272..2020282) Nitrosococcus halophilus Nc4 8916949 YP_003527452.1 CDS Nhal_1957 NC_013960.1 2020337 2020669 R PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; KEGG: dno:DNO_1135 formamidopyrimidine-DNA glycosylase; Formamidopyrimidine-DNA glycosylase catalytic domain-containing protein complement(2020337..2020669) Nitrosococcus halophilus Nc4 8916950 YP_003527453.1 CDS Nhal_1958 NC_013960.1 2020671 2022392 R PFAM: PHP domain protein; SMART: DNA polymerase X; phosphoesterase PHP domain protein; Helix-hairpin-helix DNA-binding class 1; KEGG: cbc:CbuK_1370 DNA polymerase X family; PHP domain-containing protein complement(2020671..2022392) Nitrosococcus halophilus Nc4 8916951 YP_003527454.1 CDS Nhal_1959 NC_013960.1 2022603 2022968 D KEGG: hypothetical protein LOC682438; hypothetical protein 2022603..2022968 Nitrosococcus halophilus Nc4 8916952 YP_003527455.1 CDS Nhal_1960 NC_013960.1 2023069 2023461 D KEGG: bcm:Bcenmc03_2554 hypothetical protein; hypothetical protein 2023069..2023461 Nitrosococcus halophilus Nc4 8916953 YP_003527456.1 CDS Nhal_1961 NC_013960.1 2023839 2024489 D TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: noc:Noc_1013 isopropylmalate isomerase small subunit; 3-isopropylmalate dehydratase, small subunit 2023839..2024489 Nitrosococcus halophilus Nc4 8916954 YP_003527457.1 CDS Nhal_1962 NC_013960.1 2024490 2025578 D KEGG: noc:Noc_1014 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 2024490..2025578 Nitrosococcus halophilus Nc4 8916955 YP_003527458.1 CDS Nhal_1963 NC_013960.1 2025623 2026645 D KEGG: noc:Noc_1016 aspartate-semialdehyde dehydrogenase, USG-1 related; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: semialdehyde dehydrogenase dimerisation region; semialdehyde dehydrogenase NAD - binding; aspartate-semialdehyde dehydrogenase 2025623..2026645 Nitrosococcus halophilus Nc4 8916956 YP_003527459.1 CDS Nhal_1964 NC_013960.1 2026747 2029440 D KEGG: noc:Noc_1017 hypothetical protein; hypothetical protein 2026747..2029440 Nitrosococcus halophilus Nc4 8916957 YP_003527460.1 CDS Nhal_1965 NC_013960.1 2029543 2030298 D PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: xau:Xaut_2555 phosphoesterase PA-phosphatase related; PA-phosphatase-like phosphoesterase 2029543..2030298 Nitrosococcus halophilus Nc4 8916958 YP_003527461.1 CDS Nhal_1966 NC_013960.1 2030413 2030958 D PFAM: transposase IS605 OrfB; KEGG: noc:Noc_1587 transposase; transposase IS605 OrfB 2030413..2030958 Nitrosococcus halophilus Nc4 8916959 YP_003527462.1 CDS Nhal_1967 NC_013960.1 2030994 2031773 D KEGG: noc:Noc_1018 pseudouridylate synthase; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; tRNA pseudouridine synthase A 2030994..2031773 Nitrosococcus halophilus Nc4 8916960 YP_003527463.1 CDS Nhal_1968 NC_013960.1 2031788 2032414 D PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: noc:Noc_1019 N-(5'-phosphoribosyl)anthranilate isomerase; phosphoribosylanthranilate isomerase 2031788..2032414 Nitrosococcus halophilus Nc4 8916961 YP_003527464.1 CDS Nhal_1969 NC_013960.1 2032404 2033636 D TIGRFAM: tryptophan synthase subunit beta; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; KEGG: noc:Noc_1020 tryptophan synthase subunit beta; tryptophan synthase subunit beta 2032404..2033636 Nitrosococcus halophilus Nc4 8916962 YP_003527465.1 CDS Nhal_1970 NC_013960.1 2033633 2034448 D KEGG: noc:Noc_1021 tryptophan synthase; TIGRFAM: tryptophan synthase, subunit alpha; PFAM: tryptophan synthase alpha chain; tryptophan synthase subunit alpha 2033633..2034448 Nitrosococcus halophilus Nc4 8916963 YP_003527466.1 CDS Nhal_1971 NC_013960.1 2034458 2035318 D TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, subunit beta; KEGG: noc:Noc_1022 acetyl-CoA carboxylase carboxyl transferase, subunit beta; acetyl-CoA carboxylase, carboxyl transferase subunit beta 2034458..2035318 Nitrosococcus halophilus Nc4 8916964 YP_003527467.1 CDS Nhal_1972 NC_013960.1 2035527 2036834 D KEGG: noc:Noc_1023 folylpolyglutamate synthetase; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; FolC bifunctional protein 2035527..2036834 Nitrosococcus halophilus Nc4 8916965 YP_003527468.1 CDS Nhal_1973 NC_013960.1 2036885 2037616 R KEGG: noc:Noc_1026 hypothetical protein; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase; tRNA (guanine-N(7)-)-methyltransferase complement(2036885..2037616) Nitrosococcus halophilus Nc4 8916966 YP_003527469.1 CDS Nhal_1974 NC_013960.1 2037664 2038185 R PFAM: MarR family transcriptional regulator; SMART: MarR family transcriptional regulator; KEGG: noc:Noc_1027 MarR family transcriptional regulator; MarR family transcriptional regulator complement(2037664..2038185) Nitrosococcus halophilus Nc4 8916967 YP_003527470.1 CDS Nhal_1975 NC_013960.1 2038403 2038804 D PFAM: Ectoine synthase; Cupin 2 conserved barrel domain protein; KEGG: noc:Noc_1028 L-ectoine synthase; Ectoine synthase 2038403..2038804 Nitrosococcus halophilus Nc4 8916968 YP_003527471.1 CDS Nhal_1976 NC_013960.1 2038872 2040332 D PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; KEGG: noc:Noc_1029 aspartate kinase; aspartate/glutamate/uridylate kinase 2038872..2040332 Nitrosococcus halophilus Nc4 8916969 YP_003527472.1 CDS Nhal_1977 NC_013960.1 2040329 2042695 R KEGG: bpy:Bphyt_5296 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; hypothetical protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; PAS sensor protein complement(2040329..2042695) Nitrosococcus halophilus Nc4 8916970 YP_003527473.1 CDS Nhal_1978 NC_013960.1 2042761 2044029 D TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: spe:Spro_1040 exonuclease subunit SbcD; nuclease SbcCD subunit D 2042761..2044029 Nitrosococcus halophilus Nc4 8916971 YP_003527474.1 CDS Nhal_1979 NC_013960.1 2044026 2047685 D PFAM: SMC domain protein; KEGG: hch:HCH_00898 ATPase involved in DNA repair; SMC domain-containing protein 2044026..2047685 Nitrosococcus halophilus Nc4 8916972 YP_003527475.1 CDS Nhal_1980 NC_013960.1 2047752 2048123 D KEGG: mca:MCA1292 hypothetical protein; hypothetical protein 2047752..2048123 Nitrosococcus halophilus Nc4 8916973 YP_003527476.1 CDS Nhal_1981 NC_013960.1 2048322 2048591 R KEGG: bxe:Bxe_B0464 hypothetical protein; hypothetical protein complement(2048322..2048591) Nitrosococcus halophilus Nc4 8916974 YP_003527477.1 CDS Nhal_1982 NC_013960.1 2048657 2048944 R KEGG: cti:RALTA_A2184 hypothetical protein; hypothetical protein complement(2048657..2048944) Nitrosococcus halophilus Nc4 8916975 YP_003527478.1 CDS Nhal_1983 NC_013960.1 2049120 2049305 D hypothetical protein 2049120..2049305 Nitrosococcus halophilus Nc4 8916976 YP_003527479.1 CDS Nhal_1984 NC_013960.1 2049565 2051727 D PFAM: N-6 DNA methylase; KEGG: dol:Dole_2236 N-6 DNA methylase; adenine-specific DNA-methyltransferase 2049565..2051727 Nitrosococcus halophilus Nc4 8916977 YP_003527480.1 CDS Nhal_1985 NC_013960.1 2051724 2053079 D PFAM: restriction modification system DNA specificity domain; KEGG: pcr:Pcryo_2364 restriction modification system DNA specificity subunit; restriction modification system DNA specificity domain-containing protein 2051724..2053079 Nitrosococcus halophilus Nc4 8916978 YP_003527481.1 CDS Nhal_1986 NC_013960.1 2053223 2054320 D PFAM: filamentation induced by cAMP protein Fic; KEGG: sdn:Sden_0294 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein Fic 2053223..2054320 Nitrosococcus halophilus Nc4 8916979 YP_003527482.1 CDS Nhal_1987 NC_013960.1 2054324 2058133 D KEGG: dol:Dole_2239 HsdR family type I site-specific deoxyribonuclease; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; protein of unknown function DUF559; SMART: DEAD-like helicase; type I site-specific deoxyribonuclease, HsdR family 2054324..2058133 Nitrosococcus halophilus Nc4 8916980 YP_003527483.1 CDS Nhal_1988 NC_013960.1 2058407 2059612 D PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: geo:Geob_2032 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 2058407..2059612 Nitrosococcus halophilus Nc4 8916981 YP_003527484.1 CDS Nhal_1989 NC_013960.1 2059876 2060166 R KEGG: bpy:Bphyt_3997 hypothetical protein; hypothetical protein complement(2059876..2060166) Nitrosococcus halophilus Nc4 8916982 YP_003527485.1 CDS Nhal_1990 NC_013960.1 2060768 2061763 D KEGG: sde:Sde_0444 hypothetical protein; hypothetical protein 2060768..2061763 Nitrosococcus halophilus Nc4 8916983 YP_003527486.1 CDS Nhal_1991 NC_013960.1 2061851 2062303 D hypothetical protein 2061851..2062303 Nitrosococcus halophilus Nc4 8916984 YP_003527487.1 CDS Nhal_1992 NC_013960.1 2062526 2062756 D KEGG: noc:Noc_2072 hypothetical protein; hypothetical protein 2062526..2062756 Nitrosococcus halophilus Nc4 8916985 YP_003527488.1 CDS Nhal_1993 NC_013960.1 2062753 2062896 D KEGG: noc:Noc_2071 plasmid stabilization system protein protein; plasmid stabilization system protein 2062753..2062896 Nitrosococcus halophilus Nc4 8916986 YP_003527489.1 CDS Nhal_1994 NC_013960.1 2062970 2063392 D PFAM: transposase IS200-family protein; KEGG: noc:Noc_0387 transposase IS200; transposase IS200-family protein 2062970..2063392 Nitrosococcus halophilus Nc4 8916987 YP_003527490.1 CDS Nhal_1995 NC_013960.1 2063393 2064514 D TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0388 IS891/IS1136/IS1341 transposase; transposase, IS605 OrfB family 2063393..2064514 Nitrosococcus halophilus Nc4 8916988 YP_003527491.1 CDS Nhal_1996 NC_013960.1 2064672 2065740 R KEGG: mch:Mchl_5622 transposase and inactivated derivatives-like protein; hypothetical protein complement(join(2064672..2065256,2065255..2065740)) Nitrosococcus halophilus Nc4 8916989 YP_003527492.1 CDS Nhal_1997 NC_013960.1 2066263 2066700 D hypothetical protein 2066263..2066700 Nitrosococcus halophilus Nc4 8916990 YP_003527493.1 CDS Nhal_1999 NC_013960.1 2067082 2067378 D TIGRFAM: conserved hypothetical protein; PFAM: Selenoprotein W-related; KEGG: noc:Noc_1092 SelT/SelW/SelH selenoprotein; hypothetical protein 2067082..2067378 Nitrosococcus halophilus Nc4 8916992 YP_003527494.1 CDS Nhal_2000 NC_013960.1 2067597 2068742 D PFAM: transposase IS4 family protein; KEGG: aby:ABAYE3624 IS4 family transposase; transposase IS4 family protein 2067597..2068742 Nitrosococcus halophilus Nc4 8916993 YP_003527495.1 CDS Nhal_2001 NC_013960.1 2068812 2069102 R KEGG: bpy:Bphyt_3997 hypothetical protein; hypothetical protein complement(2068812..2069102) Nitrosococcus halophilus Nc4 8916994 YP_003527496.1 CDS Nhal_2002 NC_013960.1 2069225 2069521 D hypothetical protein 2069225..2069521 Nitrosococcus halophilus Nc4 8916995 YP_003527497.1 CDS Nhal_2003 NC_013960.1 2069541 2070686 R PFAM: protein of unknown function DUF819; KEGG: pla:Plav_0567 hypothetical protein; hypothetical protein complement(2069541..2070686) Nitrosococcus halophilus Nc4 8916996 YP_003527498.1 CDS Nhal_2004 NC_013960.1 2070784 2072214 D PFAM: peptidase U62 modulator of DNA gyrase; KEGG: cvi:CV_2697 TldD protein family; peptidase U62 modulator of DNA gyrase 2070784..2072214 Nitrosococcus halophilus Nc4 8916997 YP_003527499.1 CDS Nhal_2005 NC_013960.1 2072215 2073537 D KEGG: tgr:Tgr7_2559 hypothetical protein; hypothetical protein 2072215..2073537 Nitrosococcus halophilus Nc4 8916998 YP_003527500.1 CDS Nhal_2006 NC_013960.1 2073576 2074931 D KEGG: noc:Noc_1356 hypothetical protein; hypothetical protein 2073576..2074931 Nitrosococcus halophilus Nc4 8916999 YP_003527501.1 CDS Nhal_2007 NC_013960.1 2074960 2076147 D PFAM: protein of unknown function DUF399; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: noc:Noc_1357 hypothetical protein; hypothetical protein 2074960..2076147 Nitrosococcus halophilus Nc4 8917000 YP_003527502.1 CDS Nhal_2008 NC_013960.1 2076686 2077261 R KEGG: afw:Anae109_0557 hypothetical protein; hypothetical protein complement(2076686..2077261) Nitrosococcus halophilus Nc4 8917001 YP_003527503.1 CDS Nhal_2009 NC_013960.1 2077269 2078426 R PFAM: peptidase M48 Ste24p; KEGG: afw:Anae109_0556 peptidase M48 Ste24p; peptidase M48 Ste24p complement(2077269..2078426) Nitrosococcus halophilus Nc4 8917002 YP_003527504.1 CDS Nhal_2010 NC_013960.1 2078463 2079269 R hypothetical protein complement(2078463..2079269) Nitrosococcus halophilus Nc4 8917003 YP_003527505.1 CDS Nhal_2011 NC_013960.1 2079451 2079894 D PFAM: protein of unknown function UPF0153; KEGG: noc:Noc_1358 hypothetical protein; hypothetical protein 2079451..2079894 Nitrosococcus halophilus Nc4 8917004 YP_003527506.1 CDS Nhal_2012 NC_013960.1 2079963 2082635 R PFAM: CoA-binding protein; GCN5-related N-acetyltransferase; KEGG: nmu:Nmul_A1676 GCN5-related N-acetyltransferase; CoA-binding protein complement(2079963..2082635) Nitrosococcus halophilus Nc4 8917005 YP_003527507.1 CDS Nhal_2013 NC_013960.1 2083062 2083505 R PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: abo:ABO_0748 DNA-binding protein; histone family protein DNA-binding protein complement(2083062..2083505) Nitrosococcus halophilus Nc4 8917006 YP_003527508.1 CDS Nhal_2014 NC_013960.1 2084201 2084677 R KEGG: noc:Noc_1360 hypothetical protein; hypothetical protein complement(2084201..2084677) Nitrosococcus halophilus Nc4 8917007 YP_003527509.1 CDS Nhal_2015 NC_013960.1 2084843 2085166 R PFAM: small multidrug resistance protein; KEGG: dvl:Dvul_1177 small multidrug resistance protein; small multidrug resistance protein complement(2084843..2085166) Nitrosococcus halophilus Nc4 8917008 YP_003527510.1 CDS Nhal_2016 NC_013960.1 2085385 2086557 R TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: noc:Noc_1361 pilus retraction protein PilT; twitching motility protein complement(2085385..2086557) Nitrosococcus halophilus Nc4 8917009 YP_003527511.1 CDS Nhal_2017 NC_013960.1 2086683 2087597 D PFAM: Auxin Efflux Carrier; KEGG: noc:Noc_1362 auxin efflux carrier; auxin efflux carrier 2086683..2087597 Nitrosococcus halophilus Nc4 8917010 YP_003527512.1 CDS Nhal_2018 NC_013960.1 2087610 2088356 R PFAM: molybdopterin binding domain; KEGG: noc:Noc_1363 molybdopterin binding domain-containing protein; molybdopterin binding domain-containing protein complement(2087610..2088356) Nitrosococcus halophilus Nc4 8917011 YP_003527513.1 CDS Nhal_2019 NC_013960.1 2088649 2090571 D SMART: helicase c2; KEGG: noc:Noc_1364 helicase C2; helicase c2 2088649..2090571 Nitrosococcus halophilus Nc4 8917012 YP_003527514.1 CDS Nhal_2020 NC_013960.1 2090484 2091497 R PFAM: sodium symporter; KEGG: noc:Noc_1365 solute/sodium symporter; sodium symporter complement(2090484..2091497) Nitrosococcus halophilus Nc4 8917013 YP_003527515.1 CDS Nhal_2021 NC_013960.1 2091667 2091894 D hypothetical protein 2091667..2091894 Nitrosococcus halophilus Nc4 8917014 YP_003527516.1 CDS Nhal_2022 NC_013960.1 2091882 2092271 D PFAM: PilT protein domain protein; KEGG: nha:Nham_4553 PilT protein-like; PilT protein domain-containing protein 2091882..2092271 Nitrosococcus halophilus Nc4 8917015 YP_003527517.1 CDS Nhal_2023 NC_013960.1 2092454 2095582 D PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase ; helicase; KEGG: mxa:MXAN_7274 SNF2/helicase domain-containing protein; SNF2-like protein 2092454..2095582 Nitrosococcus halophilus Nc4 8917016 YP_003527518.1 CDS Nhal_2024 NC_013960.1 2095586 2096455 D PFAM: zinc finger SWIM domain protein; KEGG: mxa:MXAN_7273 SWIM zinc finger domain-containing protein; zinc finger SWIM domain-containing protein 2095586..2096455 Nitrosococcus halophilus Nc4 8917017 YP_003527519.1 CDS Nhal_2025 NC_013960.1 2096450 2097103 R PFAM: LmbE family protein; KEGG: noc:Noc_1370 LmbE-like protein; LmbE family protein complement(2096450..2097103) Nitrosococcus halophilus Nc4 8917018 YP_003527520.1 CDS Nhal_2026 NC_013960.1 2097476 2098051 R KEGG: noc:Noc_1371 hypothetical protein; hypothetical protein complement(2097476..2098051) Nitrosococcus halophilus Nc4 8917019 YP_003527521.1 CDS Nhal_2027 NC_013960.1 2098198 2099838 D KEGG: mca:MCA0222 hypothetical protein; hypothetical protein 2098198..2099838 Nitrosococcus halophilus Nc4 8917020 YP_003527522.1 CDS Nhal_2028 NC_013960.1 2099849 2100373 R KEGG: noc:Noc_1372 hypothetical protein; hypothetical protein complement(2099849..2100373) Nitrosococcus halophilus Nc4 8917021 YP_003527523.1 CDS Nhal_2029 NC_013960.1 2100497 2100592 R hypothetical protein complement(2100497..2100592) Nitrosococcus halophilus Nc4 8917022 YP_003527524.1 CDS Nhal_2030 NC_013960.1 2100651 2102030 R PFAM: SCP-like extracellular; KEGG: noc:Noc_1373 hypothetical protein; SCP-like extracellular protein complement(2100651..2102030) Nitrosococcus halophilus Nc4 8917023 YP_003527525.1 CDS Nhal_2031 NC_013960.1 2102164 2104908 R KEGG: scl:sce2679 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; hypothetical protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; PAS sensor protein complement(2102164..2104908) Nitrosococcus halophilus Nc4 8917024 YP_003527526.1 CDS Nhal_2032 NC_013960.1 2105131 2106609 D PFAM: ATPase AAA; SMART: AAA ATPase; KEGG: noc:Noc_1374 ATPase AAA; ATPase AAA 2105131..2106609 Nitrosococcus halophilus Nc4 8917025 YP_003527527.1 CDS Nhal_2033 NC_013960.1 2106631 2107620 D PFAM: alpha/beta hydrolase fold; KEGG: noc:Noc_1375 lysophospholipase; alpha/beta hydrolase fold protein 2106631..2107620 Nitrosococcus halophilus Nc4 8917026 YP_003527528.1 CDS Nhal_2034 NC_013960.1 2107899 2108453 D PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: noc:Noc_1376 hypothetical protein; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 2107899..2108453 Nitrosococcus halophilus Nc4 8917027 YP_003527529.1 CDS Nhal_2035 NC_013960.1 2108431 2110560 D PFAM: protein of unknown function DUF839; KEGG: noc:Noc_2144 hypothetical protein; hypothetical protein 2108431..2110560 Nitrosococcus halophilus Nc4 8917028 YP_003527530.1 CDS Nhal_2036 NC_013960.1 2110592 2111827 R KEGG: noc:Noc_2145 L-sorbosone dehydrogenase; L-sorbosone dehydrogenase complement(2110592..2111827) Nitrosococcus halophilus Nc4 8917029 YP_003527531.1 CDS Nhal_2037 NC_013960.1 2112018 2112488 R PFAM: cyclase/dehydrase; KEGG: noc:Noc_2146 hypothetical protein; cyclase/dehydrase complement(2112018..2112488) Nitrosococcus halophilus Nc4 8917030 YP_003527532.1 CDS Nhal_2038 NC_013960.1 2112609 2113148 D PFAM: protein of unknown function DUF336; KEGG: noc:Noc_2147 hypothetical protein; hypothetical protein 2112609..2113148 Nitrosococcus halophilus Nc4 8917031 YP_003527533.1 CDS Nhal_2039 NC_013960.1 2113348 2114859 D PFAM: sporulation domain protein; KEGG: zipA; zipper-like domain-containing protein; sporulation domain-containing protein 2113348..2114859 Nitrosococcus halophilus Nc4 8917032 YP_003527534.1 CDS Nhal_2040 NC_013960.1 2114886 2115644 R PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: noc:Noc_2148 heat shock protein DnaJ-like; heat shock protein DnaJ domain-containing protein complement(2114886..2115644) Nitrosococcus halophilus Nc4 8917033 YP_003527535.1 CDS Nhal_2041 NC_013960.1 2115650 2116366 R KEGG: noc:Noc_2149 hypothetical protein; hypothetical protein complement(2115650..2116366) Nitrosococcus halophilus Nc4 8917034 YP_003527536.1 CDS Nhal_2042 NC_013960.1 2116463 2117332 D KEGG: noc:Noc_2150 hypothetical protein; hypothetical protein 2116463..2117332 Nitrosococcus halophilus Nc4 8917035 YP_003527537.1 CDS Nhal_2043 NC_013960.1 2117382 2117573 D hypothetical protein 2117382..2117573 Nitrosococcus halophilus Nc4 8917036 YP_003527538.1 CDS Nhal_2045 NC_013960.1 2117957 2118148 D hypothetical protein 2117957..2118148 Nitrosococcus halophilus Nc4 8917038 YP_003527539.1 CDS Nhal_2047 NC_013960.1 2118679 2118885 D PFAM: protein of unknown function UPF0150; KEGG: ppd:Ppro_1149 hypothetical protein; hypothetical protein 2118679..2118885 Nitrosococcus halophilus Nc4 8917040 YP_003527540.1 CDS Nhal_2048 NC_013960.1 2118885 2119115 D PFAM: YcfA family protein; KEGG: rpb:RPB_4579 YcfA-like; YcfA family protein 2118885..2119115 Nitrosococcus halophilus Nc4 8917041 YP_003527541.1 CDS Nhal_2050 NC_013960.1 2119660 2120490 D PFAM: protein of unknown function DUF1568; KEGG: tbd:Tbd_1967 hypothetical protein; hypothetical protein 2119660..2120490 Nitrosococcus halophilus Nc4 8917043 YP_003527542.1 CDS Nhal_2051 NC_013960.1 2121254 2122303 R PFAM: glycosyl transferase group 1; KEGG: noc:Noc_1076 glycosyl transferase, group 1; group 1 glycosyl transferase complement(2121254..2122303) Nitrosococcus halophilus Nc4 8917044 YP_003527543.1 CDS Nhal_2052 NC_013960.1 2122307 2122687 R PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: noc:Noc_1077 6-pyruvoyl tetrahydropterin synthase; hypothetical protein complement(2122307..2122687) Nitrosococcus halophilus Nc4 8917045 YP_003527544.1 CDS Nhal_2053 NC_013960.1 2122703 2123734 R KEGG: noc:Noc_1078 dehydrogenase; dehydrogenase complement(2122703..2123734) Nitrosococcus halophilus Nc4 8917046 YP_003527545.1 CDS Nhal_2054 NC_013960.1 2123710 2124804 R PFAM: bifunctional deaminase-reductase domain protein; KEGG: noc:Noc_1079 bifunctional deaminase-reductase-like; bifunctional deaminase-reductase domain-containing protein complement(2123710..2124804) Nitrosococcus halophilus Nc4 8917047 YP_003527546.1 CDS Nhal_2055 NC_013960.1 2124853 2125602 D KEGG: noc:Noc_1080 hypothetical protein; hypothetical protein 2124853..2125602 Nitrosococcus halophilus Nc4 8917048 YP_003527547.1 CDS Nhal_2056 NC_013960.1 2125613 2126263 D KEGG: noc:Noc_1081 S-isoprenylcysteine methyltransferase-like protein; S-isoprenylcysteine methyltransferase-like protein 2125613..2126263 Nitrosococcus halophilus Nc4 8917049 YP_003527548.1 CDS Nhal_2057 NC_013960.1 2126388 2126975 D PFAM: protein of unknown function DUF785; KEGG: noc:Noc_1082 hypothetical protein; hypothetical protein 2126388..2126975 Nitrosococcus halophilus Nc4 8917050 YP_003527549.1 CDS Nhal_2058 NC_013960.1 2127017 2128561 D KEGG: noc:Noc_1083 hypothetical protein; hypothetical protein 2127017..2128561 Nitrosococcus halophilus Nc4 8917051 YP_003527550.1 CDS Nhal_2059 NC_013960.1 2128558 2129499 D TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: noc:Noc_1084 alpha-L-glutamate ligase-related protein; alpha-L-glutamate ligase-like protein 2128558..2129499 Nitrosococcus halophilus Nc4 8917052 YP_003527551.1 CDS Nhal_2060 NC_013960.1 2129509 2130813 R PFAM: amino acid permease-associated region; KEGG: pca:Pcar_0190 amino acid/amine transporter; amino acid permease-associated protein complement(2129509..2130813) Nitrosococcus halophilus Nc4 8917053 YP_003527552.1 CDS Nhal_2061 NC_013960.1 2130840 2131424 R TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: uracil-DNA glycosylase superfamily; KEGG: noc:Noc_1085 phage SPO1 DNA polymerase-related protein; phage SPO1 DNA polymerase-like protein complement(2130840..2131424) Nitrosococcus halophilus Nc4 8917054 YP_003527553.1 CDS Nhal_2062 NC_013960.1 2131546 2132031 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: noc:Noc_1086 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase complement(2131546..2132031) Nitrosococcus halophilus Nc4 8917055 YP_003527554.1 CDS Nhal_2063 NC_013960.1 2132339 2132827 D KEGG: nmu:Nmul_A0896 hypothetical protein; hypothetical protein 2132339..2132827 Nitrosococcus halophilus Nc4 8917056 YP_003527555.1 CDS Nhal_2064 NC_013960.1 2132888 2134000 D PFAM: peptidase M42 family protein; KEGG: noc:Noc_1087 peptidase M42; peptidase M42 family protein 2132888..2134000 Nitrosococcus halophilus Nc4 8917057 YP_003527556.1 CDS Nhal_2065 NC_013960.1 2134042 2134626 D PFAM: ferritin; KEGG: sfu:Sfum_1965 ferritin, Dps family protein; ferroxidase 2134042..2134626 Nitrosococcus halophilus Nc4 8917058 YP_003527557.1 CDS Nhal_2066 NC_013960.1 2134682 2135284 R PFAM: MarR family transcriptional regulator; SMART: MarR family transcriptional regulator; KEGG: noc:Noc_1088 MarR family transcriptional regulator; MarR family transcriptional regulator complement(2134682..2135284) Nitrosococcus halophilus Nc4 8917059 YP_003527558.1 CDS Nhal_2067 NC_013960.1 2135312 2135902 D KEGG: mca:MCA2394 cytochrome C'; cytochrome C' 2135312..2135902 Nitrosococcus halophilus Nc4 8917060 YP_003527559.1 CDS Nhal_2068 NC_013960.1 2136010 2136600 D KEGG: noc:Noc_1089 hypothetical protein; hypothetical protein 2136010..2136600 Nitrosococcus halophilus Nc4 8917061 YP_003527560.1 CDS Nhal_2069 NC_013960.1 2136968 2137381 D TIGRFAM: nitrosocyanin; KEGG: nmu:Nmul_A1601 chain A, red copper protein nitrosocyanin; nitrosocyanin 2136968..2137381 Nitrosococcus halophilus Nc4 8917062 YP_003527561.1 CDS Nhal_2070 NC_013960.1 2137488 2140379 R TIGRFAM: valyl-tRNA synthetase; KEGG: noc:Noc_1091 valyl-tRNA synthetase; valyl-tRNA synthetase complement(2137488..2140379) Nitrosococcus halophilus Nc4 8917063 YP_003527562.1 CDS Nhal_2071 NC_013960.1 2140744 2141364 R PFAM: protein of unknown function DUF374; KEGG: lip:LI0870 hypothetical protein; hypothetical protein complement(2140744..2141364) Nitrosococcus halophilus Nc4 8917064 YP_003527563.1 CDS Nhal_2073 NC_013960.1 2141608 2142276 R PFAM: protein of unknown function DUF159; KEGG: noc:Noc_1737 hypothetical protein; hypothetical protein complement(2141608..2142276) Nitrosococcus halophilus Nc4 8917066 YP_003527564.1 CDS Nhal_2074 NC_013960.1 2142276 2144462 R KEGG: noc:Noc_1736 hypothetical protein; hypothetical protein complement(2142276..2144462) Nitrosococcus halophilus Nc4 8917067 YP_003527565.1 CDS Nhal_2075 NC_013960.1 2144690 2146966 D PFAM: protein of unknown function DUF1974; acyl-CoA dehydrogenase domain protein; KEGG: noc:Noc_1735 acyl-CoA dehydrogenase; hypothetical protein 2144690..2146966 Nitrosococcus halophilus Nc4 8917068 YP_003527566.1 CDS Nhal_2076 NC_013960.1 2147069 2148361 D KEGG: noc:Noc_1734 3-ketoacyl-CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase; acetyl-CoA acetyltransferase 2147069..2148361 Nitrosococcus halophilus Nc4 8917069 YP_003527567.1 CDS Nhal_2077 NC_013960.1 2148358 2150598 D PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: noc:Noc_1733 multifunctional fatty acid oxidation complex subunit alpha; 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein 2148358..2150598 Nitrosococcus halophilus Nc4 8917070 YP_003527568.1 CDS Nhal_2078 NC_013960.1 2150612 2151781 R PFAM: cytochrome B561; KEGG: noc:Noc_1732 cytochrome b561; cytochrome B561 complement(2150612..2151781) Nitrosococcus halophilus Nc4 8917071 YP_003527569.1 CDS Nhal_2079 NC_013960.1 2151859 2152104 D hypothetical protein 2151859..2152104 Nitrosococcus halophilus Nc4 8917072 YP_003527570.1 CDS Nhal_2082 NC_013960.1 2153891 2155033 D TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: pin:Ping_3063 transposase, IS605 OrfB family protein; transposase, IS605 OrfB family 2153891..2155033 Nitrosococcus halophilus Nc4 8917075 YP_003527571.1 CDS Nhal_2083 NC_013960.1 2156016 2156588 D KEGG: noc:Noc_1731 hypothetical protein; hypothetical protein 2156016..2156588 Nitrosococcus halophilus Nc4 8917076 YP_003527572.1 CDS Nhal_2084 NC_013960.1 2157164 2159308 D PFAM: organic solvent tolerance protein; OstA family protein; KEGG: noc:Noc_1724 organic solvent tolerance protein; organic solvent tolerance protein 2157164..2159308 Nitrosococcus halophilus Nc4 8917079 YP_003527573.1 CDS Nhal_2085 NC_013960.1 2159385 2160662 D PFAM: SurA domain; PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: noc:Noc_1723 PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain-containing protein 2159385..2160662 Nitrosococcus halophilus Nc4 8917080 YP_003527574.1 CDS Nhal_2086 NC_013960.1 2160681 2161664 D KEGG: noc:Noc_1722 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 2160681..2161664 Nitrosococcus halophilus Nc4 8917081 YP_003527575.1 CDS Nhal_2087 NC_013960.1 2161661 2162458 D KEGG: noc:Noc_1721 16S rRNA dimethylase; TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: ribosomal RNA adenine methylase transferase; dimethyladenosine transferase 2161661..2162458 Nitrosococcus halophilus Nc4 8917082 YP_003527576.1 CDS Nhal_2088 NC_013960.1 2162465 2163055 R TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: noc:Noc_1720 Maf-like protein; maf protein complement(2162465..2163055) Nitrosococcus halophilus Nc4 8917083 YP_003527577.1 CDS Nhal_2089 NC_013960.1 2163052 2164878 R TIGRFAM: oxaloacetate decarboxylase subunit alpha; PFAM: Conserved carboxylase region; pyruvate carboxyltransferase; biotin/lipoyl attachment domain-containing protein; KEGG: pen:PSEEN5495 pyruvate carboxylase subunit B; oxaloacetate decarboxylase subunit alpha complement(2163052..2164878) Nitrosococcus halophilus Nc4 8917084 YP_003527578.1 CDS Nhal_2090 NC_013960.1 2164907 2166325 R PFAM: carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; carbamoyl-phosphate synthetase large chain domain protein; KEGG: tgr:Tgr7_1915 acetyl-CoA carboxylase, biotin carboxylase; carbamoyl-phosphate synthase L chain ATP-binding protein complement(2164907..2166325) Nitrosococcus halophilus Nc4 8917085 YP_003527579.1 CDS Nhal_2091 NC_013960.1 2166367 2168001 R PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: noc:Noc_1719 phosphoglucomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I complement(2166367..2168001) Nitrosococcus halophilus Nc4 8917086 YP_003527580.1 CDS Nhal_2092 NC_013960.1 2168180 2170078 D PFAM: heat shock protein Hsp90; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: noc:Noc_1718 heat shock protein 90; heat shock protein Hsp90 2168180..2170078 Nitrosococcus halophilus Nc4 8917087 YP_003527581.1 CDS Nhal_2093 NC_013960.1 2170161 2170778 D PFAM: response regulator receiver; LuxR family transcriptional regulator; Sigma-70 region 4 type 2; SMART: response regulator receiver; LuxR family transcriptional regulator; KEGG: noc:Noc_1717 two component LuxR family transcriptional regulator; response regulator receiver 2170161..2170778 Nitrosococcus halophilus Nc4 8917088 YP_003527582.1 CDS Nhal_2094 NC_013960.1 2171010 2171315 D KEGG: noc:Noc_1602 hypothetical protein; hypothetical protein 2171010..2171315 Nitrosococcus halophilus Nc4 8917089 YP_003527583.1 CDS Nhal_2095 NC_013960.1 2171379 2171789 R TIGRFAM: Rrf2 family transcriptional regulator; PFAM: protein of unknown function UPF0074; KEGG: noc:Noc_1716 hypothetical protein; Rrf2 family transcriptional regulator complement(2171379..2171789) Nitrosococcus halophilus Nc4 8917090 YP_003527584.1 CDS Nhal_2096 NC_013960.1 2171914 2173044 D PFAM: protein of unknown function DUF482; KEGG: noc:Noc_1715 hypothetical protein; hypothetical protein 2171914..2173044 Nitrosococcus halophilus Nc4 8917091 YP_003527585.1 CDS Nhal_2097 NC_013960.1 2173143 2173781 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: noc:Noc_1714 ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG family protein 2173143..2173781 Nitrosococcus halophilus Nc4 8917092 YP_003527586.1 CDS Nhal_2098 NC_013960.1 2173812 2174450 D PFAM: beta-lactamase; KEGG: noc:Noc_1713 metallo-beta-lactamase family protein; beta-lactamase 2173812..2174450 Nitrosococcus halophilus Nc4 8917093 YP_003527587.1 CDS Nhal_2099 NC_013960.1 2174464 2174868 R hypothetical protein complement(2174464..2174868) Nitrosococcus halophilus Nc4 8917094 YP_003527588.1 CDS Nhal_2100 NC_013960.1 2174982 2175083 R hypothetical protein complement(2174982..2175083) Nitrosococcus halophilus Nc4 8917095 YP_003527589.1 CDS Nhal_2101 NC_013960.1 2175414 2175632 D KEGG: hch:HCH_03920 hypothetical protein; hypothetical protein 2175414..2175632 Nitrosococcus halophilus Nc4 8917096 YP_003527590.1 CDS Nhal_2102 NC_013960.1 2175683 2177224 D KEGG: scl:sce3895 hypothetical protein; phosphodiesterase/alkaline phosphatase D-like protein 2175683..2177224 Nitrosococcus halophilus Nc4 8917097 YP_003527591.1 CDS Nhal_2103 NC_013960.1 2177251 2177628 R PFAM: thiol-disulphide oxidoreductase DCC; KEGG: noc:Noc_1922 hypothetical protein; thiol-disulfide oxidoreductase DCC complement(2177251..2177628) Nitrosococcus halophilus Nc4 8917098 YP_003527592.1 CDS Nhal_2104 NC_013960.1 2177632 2178231 R PFAM: protein of unknown function DUF1232; KEGG: noc:Noc_1921 hypothetical protein; hypothetical protein complement(2177632..2178231) Nitrosococcus halophilus Nc4 8917099 YP_003527593.1 CDS Nhal_2105 NC_013960.1 2178254 2178697 R PFAM: isoprenylcysteine carboxyl methyltransferase; KEGG: noc:Noc_1112 hypothetical protein; isoprenylcysteine carboxyl methyltransferase complement(2178254..2178697) Nitrosococcus halophilus Nc4 8917100 YP_003527594.1 CDS Nhal_2106 NC_013960.1 2178754 2179461 D PFAM: conserved hypothetical protein; KEGG: wsu:WS0656 hypothetical protein; hypothetical protein 2178754..2179461 Nitrosococcus halophilus Nc4 8917101 YP_003527595.1 CDS Nhal_2107 NC_013960.1 2179445 2179822 R PFAM: protein of unknown function DUF454; KEGG: noc:Noc_1113 hypothetical protein; hypothetical protein complement(2179445..2179822) Nitrosococcus halophilus Nc4 8917102 YP_003527596.1 CDS Nhal_2108 NC_013960.1 2180138 2181442 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: noc:Noc_1114 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 2180138..2181442 Nitrosococcus halophilus Nc4 8917103 YP_003527597.1 CDS Nhal_2109 NC_013960.1 2181600 2182328 R PFAM: zinc/iron permease; KEGG: net:Neut_0463 zinc/iron permease; zinc/iron permease complement(2181600..2182328) Nitrosococcus halophilus Nc4 8917104 YP_003527598.1 CDS Nhal_2110 NC_013960.1 2183122 2184132 D KEGG: tgr:Tgr7_0274 hypothetical protein; hypothetical protein 2183122..2184132 Nitrosococcus halophilus Nc4 8917105 YP_003527599.1 CDS Nhal_2111 NC_013960.1 2184101 2185483 D hypothetical protein 2184101..2185483 Nitrosococcus halophilus Nc4 8917106 YP_003527600.1 CDS Nhal_2112 NC_013960.1 2185666 2186028 R hypothetical protein complement(2185666..2186028) Nitrosococcus halophilus Nc4 8917107 YP_003527601.1 CDS Nhal_2113 NC_013960.1 2186331 2186840 D KEGG: noc:Noc_2700 hypothetical protein; hypothetical protein 2186331..2186840 Nitrosococcus halophilus Nc4 8917108 YP_003527602.1 CDS Nhal_2114 NC_013960.1 2187229 2187738 D KEGG: noc:Noc_2700 hypothetical protein; hypothetical protein 2187229..2187738 Nitrosococcus halophilus Nc4 8917109 YP_003527603.1 CDS Nhal_2115 NC_013960.1 2187883 2188398 R PFAM: heat shock protein Hsp20; CS; KEGG: noc:Noc_1573 heat shock protein HSP20; heat shock protein Hsp20 complement(2187883..2188398) Nitrosococcus halophilus Nc4 8917110 YP_003527604.1 CDS Nhal_2116 NC_013960.1 2188548 2190146 R PFAM: FAD dependent oxidoreductase; KEGG: noc:Noc_2699 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(2188548..2190146) Nitrosococcus halophilus Nc4 8917111 YP_003527605.1 CDS Nhal_2117 NC_013960.1 2190155 2191666 R TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: noc:Noc_2698 glycerol kinase; glycerol kinase complement(2190155..2191666) Nitrosococcus halophilus Nc4 8917112 YP_003527606.1 CDS Nhal_2118 NC_013960.1 2191754 2191921 D hypothetical protein 2191754..2191921 Nitrosococcus halophilus Nc4 8917113 YP_003527607.1 CDS Nhal_2121 NC_013960.1 2193662 2194186 R KEGG: noc:Noc_2696 hypothetical protein; hypothetical protein complement(2193662..2194186) Nitrosococcus halophilus Nc4 8917116 YP_003527608.1 CDS Nhal_2122 NC_013960.1 2194493 2195059 R PFAM: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30; KEGG: noc:Noc_2695 hypothetical protein; NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 complement(2194493..2195059) Nitrosococcus halophilus Nc4 8917117 YP_003527609.1 CDS Nhal_2123 NC_013960.1 2195110 2195307 D KEGG: noc:Noc_2694 hypothetical protein; hypothetical protein 2195110..2195307 Nitrosococcus halophilus Nc4 8917118 YP_003527610.1 CDS Nhal_2124 NC_013960.1 2195326 2196144 R PFAM: glycosyl transferase family 2; KEGG: noc:Noc_0588 glycosyl transferase; family 2 glycosyl transferase complement(2195326..2196144) Nitrosococcus halophilus Nc4 8917119 YP_003527611.1 CDS Nhal_2125 NC_013960.1 2196149 2198287 R KEGG: msl:Msil_0816 hypothetical protein; hypothetical protein complement(2196149..2198287) Nitrosococcus halophilus Nc4 8917120 YP_003527612.1 CDS Nhal_2126 NC_013960.1 2198383 2200845 D PFAM: glycoside hydrolase family 31; KEGG: scl:sce3449 alpha-glucosidase family protein; alpha-glucosidase 2198383..2200845 Nitrosococcus halophilus Nc4 8917121 YP_003527613.1 CDS Nhal_2127 NC_013960.1 2200854 2202116 D KEGG: noc:Noc_2693 hypothetical protein; hypothetical protein 2200854..2202116 Nitrosococcus halophilus Nc4 8917122 YP_003527614.1 CDS Nhal_2128 NC_013960.1 2202380 2204917 D KEGG: gme:Gmet_3085 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold domain protein; hypothetical protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein; diguanylate cyclase 2202380..2204917 Nitrosococcus halophilus Nc4 8917123 YP_003527615.1 CDS Nhal_2129 NC_013960.1 2204994 2206430 R TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1115 proton-translocating NADH-quinone oxidoreductase, chain N; proton-translocating NADH-quinone oxidoreductase subunit N complement(2204994..2206430) Nitrosococcus halophilus Nc4 8917124 YP_003527616.1 CDS Nhal_2130 NC_013960.1 2206434 2207930 R TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1116 proton-translocating NADH-quinone oxidoreductase, chain M; proton-translocating NADH-quinone oxidoreductase subunit M complement(2206434..2207930) Nitrosococcus halophilus Nc4 8917125 YP_003527617.1 CDS Nhal_2131 NC_013960.1 2207927 2209900 R TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; KEGG: noc:Noc_1117 NADH-plastoquinone oxidoreductase, chain 5; proton-translocating NADH-quinone oxidoreductase subunit L complement(2207927..2209900) Nitrosococcus halophilus Nc4 8917126 YP_003527618.1 CDS Nhal_2132 NC_013960.1 2209902 2210210 R PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: noc:Noc_1118 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase chain 4L complement(2209902..2210210) Nitrosococcus halophilus Nc4 8917127 YP_003527619.1 CDS Nhal_2133 NC_013960.1 2210210 2210713 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: noc:Noc_1119 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 complement(2210210..2210713) Nitrosococcus halophilus Nc4 8917128 YP_003527620.1 CDS Nhal_2134 NC_013960.1 2210824 2211366 R TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: noc:Noc_1120 NADH dehydrogenase subunit I; NADH-quinone oxidoreductase subunit I complement(2210824..2211366) Nitrosococcus halophilus Nc4 8917129 YP_003527621.1 CDS Nhal_2135 NC_013960.1 2211385 2212344 R PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: noc:Noc_1121 NADH dehydrogenase subunit H; NADH dehydrogenase (quinone) complement(2211385..2212344) Nitrosococcus halophilus Nc4 8917130 YP_003527622.1 CDS Nhal_2136 NC_013960.1 2212341 2215052 R TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: molybdopterin oxidoreductase Fe4S4 region; ferredoxin; KEGG: noc:Noc_1122 NADH dehydrogenase subunit G; NADH-quinone oxidoreductase subunit G complement(2212341..2215052) Nitrosococcus halophilus Nc4 8917131 YP_003527623.1 CDS Nhal_2137 NC_013960.1 2215052 2216344 R KEGG: noc:Noc_1123 NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH-quinone oxidoreductase subunit F complement(2215052..2216344) Nitrosococcus halophilus Nc4 8917132 YP_003527624.1 CDS Nhal_2138 NC_013960.1 2216341 2216808 R TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: noc:Noc_1124 NADH dehydrogenase (ubiquinone), 24 kDa subunit; NADH-quinone oxidoreductase subunit E complement(2216341..2216808) Nitrosococcus halophilus Nc4 8917133 YP_003527625.1 CDS Nhal_2139 NC_013960.1 2216808 2217110 R hypothetical protein complement(2216808..2217110) Nitrosococcus halophilus Nc4 8917134 YP_003527626.1 CDS Nhal_2140 NC_013960.1 2217143 2218885 R TIGRFAM: NADH dehydrogenase I, D subunit; NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: noc:Noc_1125 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; NADH dehydrogenase I subunit D complement(2217143..2218885) Nitrosococcus halophilus Nc4 8917135 YP_003527627.1 CDS Nhal_2141 NC_013960.1 2218891 2219529 R KEGG: noc:Noc_1126 NADH dehydrogenase subunit B; TIGRFAM: NADH-quinone oxidoreductase subunit beta; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; NADH-quinone oxidoreductase subunit beta complement(2218891..2219529) Nitrosococcus halophilus Nc4 8917136 YP_003527628.1 CDS Nhal_2142 NC_013960.1 2219534 2219938 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: noc:Noc_1127 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 complement(2219534..2219938) Nitrosococcus halophilus Nc4 8917137 YP_003527629.1 CDS Nhal_2143 NC_013960.1 2220058 2220285 R KEGG: bvi:Bcep1808_6189 hypothetical protein; hypothetical protein complement(2220058..2220285) Nitrosococcus halophilus Nc4 8917138 YP_003527630.1 CDS Nhal_2144 NC_013960.1 2220304 2220777 R hypothetical protein complement(2220304..2220777) Nitrosococcus halophilus Nc4 8917139 YP_003527631.1 CDS Nhal_2145 NC_013960.1 2221001 2221729 D KEGG: noc:Noc_1131 hypothetical protein; hypothetical protein 2221001..2221729 Nitrosococcus halophilus Nc4 8917140 YP_003527632.1 CDS Nhal_2146 NC_013960.1 2221786 2223150 D PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: hch:HCH_00693 cytochrome bd-type quinol oxidase subunit 1; cytochrome bd ubiquinol oxidase subunit I 2221786..2223150 Nitrosococcus halophilus Nc4 8917141 YP_003527633.1 CDS Nhal_2147 NC_013960.1 2223169 2224167 D TIGRFAM: cytochrome d ubiquinol oxidase subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: rpb:RPB_4671 cytochrome d ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase subunit II 2223169..2224167 Nitrosococcus halophilus Nc4 8917142 YP_003527634.1 CDS Nhal_2148 NC_013960.1 2224187 2225239 D KEGG: pca:Pcar_2495 RNA 3'-terminal-phosphate cyclase; TIGRFAM: RNA 3'-phosphate cyclase; PFAM: RNA 3'-terminal phosphate cyclase; RNA 3'-terminal phosphate cyclase insert region; RNA 3'-phosphate cyclase 2224187..2225239 Nitrosococcus halophilus Nc4 8917143 YP_003527635.1 CDS Nhal_2149 NC_013960.1 2225259 2225519 R PFAM: protein of unknown function DUF504; KEGG: pca:Pcar_0300 hypothetical protein; hypothetical protein complement(2225259..2225519) Nitrosococcus halophilus Nc4 8917144 YP_003527636.1 CDS Nhal_2150 NC_013960.1 2225568 2226236 D KEGG: Os08g0300000; hypothetical protein; hypothetical protein 2225568..2226236 Nitrosococcus halophilus Nc4 8917145 YP_003527637.1 CDS Nhal_2151 NC_013960.1 2226255 2226584 R KEGG: mxa:MXAN_7103 CheR methyltransferase SAM-binding domain-containing protein; hypothetical protein complement(2226255..2226584) Nitrosococcus halophilus Nc4 8917146 YP_003527638.1 CDS Nhal_2152 NC_013960.1 2226957 2228060 D KEGG: sfu:Sfum_2648 pyruvate dehydrogenase (acetyl-transferring); TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, subunit alpha; PFAM: dehydrogenase E1 component; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 2226957..2228060 Nitrosococcus halophilus Nc4 8917147 YP_003527639.1 CDS Nhal_2153 NC_013960.1 2228053 2229033 D PFAM: transketolase; transketolase domain protein; KEGG: sfu:Sfum_2647 transketolase, central region; transketolase 2228053..2229033 Nitrosococcus halophilus Nc4 8917148 YP_003527640.1 CDS Nhal_2154 NC_013960.1 2229046 2230335 D PFAM: dehydrogenase; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: sfu:Sfum_2646 dehydrogenase; dehydrogenase 2229046..2230335 Nitrosococcus halophilus Nc4 8917149 YP_003527641.1 CDS Nhal_2155 NC_013960.1 2230390 2231310 R PFAM: carbonic anhydrase; KEGG: noc:Noc_1132 carbonate dehydratase; carbonic anhydrase complement(2230390..2231310) Nitrosococcus halophilus Nc4 8917150 YP_003527642.1 CDS Nhal_2156 NC_013960.1 2231764 2232147 R KEGG: noc:Noc_1133 hypothetical protein; hypothetical protein complement(2231764..2232147) Nitrosococcus halophilus Nc4 8917151 YP_003527643.1 CDS Nhal_2157 NC_013960.1 2232273 2234291 D TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: afw:Anae109_1015 copper-translocating P-type ATPase; ATPase P 2232273..2234291 Nitrosococcus halophilus Nc4 8917152 YP_003527644.1 CDS Nhal_2158 NC_013960.1 2234331 2234945 D PFAM: inorganic pyrophosphatase; KEGG: noc:Noc_1134 inorganic pyrophosphatase; inorganic diphosphatase 2234331..2234945 Nitrosococcus halophilus Nc4 8917153 YP_003527645.1 CDS Nhal_2159 NC_013960.1 2234977 2235480 D hypothetical protein 2234977..2235480 Nitrosococcus halophilus Nc4 8917154 YP_003527646.1 CDS Nhal_2160 NC_013960.1 2235956 2236156 D hypothetical protein 2235956..2236156 Nitrosococcus halophilus Nc4 8917155 YP_003527647.1 CDS Nhal_2162 NC_013960.1 2236928 2238073 D PFAM: transposase IS4 family protein; KEGG: aby:ABAYE3624 IS4 family transposase; transposase IS4 family protein 2236928..2238073 Nitrosococcus halophilus Nc4 8917157 YP_003527648.1 CDS Nhal_2163 NC_013960.1 2238229 2239176 D TIGRFAM: hydrolase, ortholog 1, exosortase system type 1 associated; KEGG: noc:Noc_1959 esterase/lipase/thioesterase family protein; hydrolase, exosortase system type 1 associated 2238229..2239176 Nitrosococcus halophilus Nc4 8917158 YP_003527649.1 CDS Nhal_2164 NC_013960.1 2239158 2240411 D KEGG: noc:Noc_1958 hypothetical protein; hypothetical protein 2239158..2240411 Nitrosococcus halophilus Nc4 8917159 YP_003527650.1 CDS Nhal_2165 NC_013960.1 2240415 2241647 R TIGRFAM: pyridoxal-dependent decarboxylase, exosortase system type 1 associated; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: noc:Noc_1957 Orn/DAP/Arg decarboxylase 2; pyridoxal-dependent decarboxylase, exosortase system type 1 associated complement(2240415..2241647) Nitrosococcus halophilus Nc4 8917160 YP_003527651.1 CDS Nhal_2166 NC_013960.1 2241644 2243257 R TIGRFAM: acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; PFAM: AMP-dependent synthetase and ligase; KEGG: noc:Noc_1956 AMP-dependent synthetase and ligase; acyl-CoA ligase (AMP-forming), exosortase system type 1 associated complement(2241644..2243257) Nitrosococcus halophilus Nc4 8917161 YP_003527652.1 CDS Nhal_2167 NC_013960.1 2243384 2244790 D TIGRFAM: wzy family polymerase, exosortase system type 1 associated; KEGG: noc:Noc_1955 O-antigen polymerase; wzy family polymerase, exosortase system type 1 associated 2243384..2244790 Nitrosococcus halophilus Nc4 8917162 YP_003527653.1 CDS Nhal_2168 NC_013960.1 2244787 2245617 D KEGG: noc:Noc_1954 hypothetical protein; hypothetical protein 2244787..2245617 Nitrosococcus halophilus Nc4 8917163 YP_003527654.1 CDS Nhal_2169 NC_013960.1 2245676 2247013 D KEGG: noc:Noc_1953 hypothetical protein; hypothetical protein 2245676..2247013 Nitrosococcus halophilus Nc4 8917164 YP_003527655.1 CDS Nhal_2170 NC_013960.1 2247038 2247862 R PFAM: protein of unknown function DUF1555; KEGG: noc:Noc_1952 hypothetical protein; hypothetical protein complement(2247038..2247862) Nitrosococcus halophilus Nc4 8917165 YP_003527656.1 CDS Nhal_2171 NC_013960.1 2248222 2249580 D PFAM: FAD linked oxidase; KEGG: noc:Noc_1951 FAD linked oxidase-like; FAD linked oxidase 2248222..2249580 Nitrosococcus halophilus Nc4 8917166 YP_003527657.1 CDS Nhal_2172 NC_013960.1 2249577 2250317 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: noc:Noc_1950 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2249577..2250317 Nitrosococcus halophilus Nc4 8917167 YP_003527658.1 CDS Nhal_2173 NC_013960.1 2250317 2250946 D TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase-like); KEGG: noc:Noc_1949 HAD family hydrolase; HAD-superfamily hydrolase 2250317..2250946 Nitrosococcus halophilus Nc4 8917168 YP_003527659.1 CDS Nhal_2174 NC_013960.1 2250943 2251815 D PFAM: UbiA prenyltransferase; KEGG: noc:Noc_1948 UbiA prenyltransferase; UbiA prenyltransferase 2250943..2251815 Nitrosococcus halophilus Nc4 8917169 YP_003527660.1 CDS Nhal_2175 NC_013960.1 2251826 2252773 D PFAM: conserved hypothetical protein; KEGG: noc:Noc_1947 hypothetical protein; hypothetical protein 2251826..2252773 Nitrosococcus halophilus Nc4 8917170 YP_003527661.1 CDS Nhal_2176 NC_013960.1 2253090 2254850 D KEGG: noc:Noc_1944 hypothetical protein; hypothetical protein 2253090..2254850 Nitrosococcus halophilus Nc4 8917171 YP_003527662.1 CDS Nhal_2177 NC_013960.1 2254910 2256478 R KEGG: noc:Noc_1945 hypothetical protein; hypothetical protein complement(2254910..2256478) Nitrosococcus halophilus Nc4 8917172 YP_003527663.1 CDS Nhal_2179 NC_013960.1 2258159 2258404 D KEGG: prw:PsycPRwf_1938 IS1 transposase; hypothetical protein 2258159..2258404 Nitrosococcus halophilus Nc4 8917174 YP_003527664.1 CDS Nhal_2180 NC_013960.1 2258397 2258876 D PFAM: IS1 transposase; KEGG: vvy:VV0559 transposase B; IS1 transposase 2258397..2258876 Nitrosococcus halophilus Nc4 8917175 YP_003527665.1 CDS Nhal_2181 NC_013960.1 2258897 2259805 R KEGG: dal:Dalk_1094 hypothetical protein; hypothetical protein complement(2258897..2259805) Nitrosococcus halophilus Nc4 8917176 YP_003527666.1 CDS Nhal_2182 NC_013960.1 2259842 2260039 R hypothetical protein complement(2259842..2260039) Nitrosococcus halophilus Nc4 8917177 YP_003527667.1 CDS Nhal_2185 NC_013960.1 2261487 2262556 D KEGG: mch:Mchl_5622 transposase and inactivated derivatives-like protein; hypothetical protein join(2261487..2261975,2261975..2262556) Nitrosococcus halophilus Nc4 8917180 YP_003527668.1 CDS Nhal_2188 NC_013960.1 2263869 2265371 D KEGG: noc:Noc_1943 hypothetical protein; hypothetical protein 2263869..2265371 Nitrosococcus halophilus Nc4 8917183 YP_003527669.1 CDS Nhal_2189 NC_013960.1 2265691 2266158 D hypothetical protein 2265691..2266158 Nitrosococcus halophilus Nc4 8917184 YP_003527670.1 CDS Nhal_2190 NC_013960.1 2266130 2266792 D hypothetical protein 2266130..2266792 Nitrosococcus halophilus Nc4 8917185 YP_003527671.1 CDS Nhal_2192 NC_013960.1 2267297 2267563 D hypothetical protein 2267297..2267563 Nitrosococcus halophilus Nc4 8917187 YP_003527672.1 CDS Nhal_2193 NC_013960.1 2267611 2269047 D PFAM: polysaccharide biosynthesis protein; KEGG: noc:Noc_1942 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 2267611..2269047 Nitrosococcus halophilus Nc4 8917188 YP_003527673.1 CDS Nhal_2194 NC_013960.1 2269207 2270787 D KEGG: noc:Noc_1941 hypothetical protein; hypothetical protein 2269207..2270787 Nitrosococcus halophilus Nc4 8917189 YP_003527674.1 CDS Nhal_2195 NC_013960.1 2270794 2271921 D KEGG: noc:Noc_1940 hypothetical protein; hypothetical protein 2270794..2271921 Nitrosococcus halophilus Nc4 8917190 YP_003527675.1 CDS Nhal_2196 NC_013960.1 2271974 2274172 D KEGG: noc:Noc_1939 hypothetical protein; hypothetical protein 2271974..2274172 Nitrosococcus halophilus Nc4 8917191 YP_003527676.1 CDS Nhal_2197 NC_013960.1 2274185 2274421 D hypothetical protein 2274185..2274421 Nitrosococcus halophilus Nc4 8917192 YP_003527677.1 CDS Nhal_2198 NC_013960.1 2274646 2275881 D PFAM: VanZ family protein; KEGG: noc:Noc_1937 VanZ like protein; VanZ family protein 2274646..2275881 Nitrosococcus halophilus Nc4 8917193 YP_003527678.1 CDS Nhal_2200 NC_013960.1 2277357 2278139 D PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: noc:Noc_1936 peptidase S1 and S6, chymotrypsin/Hap; peptidase S1 and S6 chymotrypsin/Hap 2277357..2278139 Nitrosococcus halophilus Nc4 8917195 YP_003527679.1 CDS Nhal_2201 NC_013960.1 2278170 2279033 R TIGRFAM: RNA polymerase sigma factor RpoH; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: noc:Noc_1935 RpoH; RNA polymerase sigma factor RpoH complement(2278170..2279033) Nitrosococcus halophilus Nc4 8917196 YP_003527680.1 CDS Nhal_2202 NC_013960.1 2279439 2280509 R KEGG: noc:Noc_1934 cell division transporter substrate-binding protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY complement(2279439..2280509) Nitrosococcus halophilus Nc4 8917197 YP_003527681.1 CDS Nhal_2203 NC_013960.1 2280590 2281969 D PFAM: peptidase M16 domain protein; KEGG: noc:Noc_1933 peptidase M16-like; peptidase M16 domain-containing protein 2280590..2281969 Nitrosococcus halophilus Nc4 8917198 YP_003527682.1 CDS Nhal_2204 NC_013960.1 2281959 2283263 D PFAM: peptidase M16 domain protein; KEGG: noc:Noc_1932 peptidase M16-like; peptidase M16 domain-containing protein 2281959..2283263 Nitrosococcus halophilus Nc4 8917199 YP_003527683.1 CDS Nhal_2205 NC_013960.1 2283247 2283825 D KEGG: noc:Noc_1931 hypothetical protein; TIGRFAM: methyltransferase; PFAM: protein of unknown function methylase; methyltransferase 2283247..2283825 Nitrosococcus halophilus Nc4 8917200 YP_003527684.1 CDS Nhal_2206 NC_013960.1 2283853 2284335 D KEGG: noc:Noc_1930 coenzyme A biosynthesis protein; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase 2283853..2284335 Nitrosococcus halophilus Nc4 8917201 YP_003527685.1 CDS Nhal_2207 NC_013960.1 2284373 2284627 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: noc:Noc_1929 4Fe-4S ferredoxin iron-sulfur binding; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 2284373..2284627 Nitrosococcus halophilus Nc4 8917202 YP_003527686.1 CDS Nhal_2208 NC_013960.1 2284704 2285567 R PFAM: aldo/keto reductase; KEGG: hypothetical protein; aldo/keto reductase complement(2284704..2285567) Nitrosococcus halophilus Nc4 8917203 YP_003527687.1 CDS Nhal_2209 NC_013960.1 2286130 2286246 D hypothetical protein 2286130..2286246 Nitrosococcus halophilus Nc4 8917204 YP_003527688.1 CDS Nhal_2210 NC_013960.1 2286546 2288273 D KEGG: noc:Noc_0769 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 2286546..2288273 Nitrosococcus halophilus Nc4 8917205 YP_003527689.1 CDS Nhal_2211 NC_013960.1 2288648 2289523 R PFAM: initiation factor 2B related; KEGG: sse:Ssed_2704 initiation factor 2B related; initiation factor 2B-like protein complement(2288648..2289523) Nitrosococcus halophilus Nc4 8917206 YP_003527690.1 CDS Nhal_2212 NC_013960.1 2289520 2289945 R PFAM: NUDIX hydrolase; KEGG: hypothetical protein; NUDIX hydrolase complement(2289520..2289945) Nitrosococcus halophilus Nc4 8917207 YP_003527691.1 CDS Nhal_2213 NC_013960.1 2289995 2292883 R PFAM: phosphoenolpyruvate carboxylase; KEGG: noc:Noc_0770 phosphoenolpyruvate carboxylase; phosphoenolpyruvate carboxylase complement(2289995..2292883) Nitrosococcus halophilus Nc4 8917208 YP_003527692.1 CDS Nhal_2214 NC_013960.1 2293350 2294798 R TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1; KEGG: noc:Noc_0771 glycogen/starch synthase, ADP-glucose type; glycogen/starch synthase, ADP-glucose type complement(2293350..2294798) Nitrosococcus halophilus Nc4 8917209 YP_003527693.1 CDS Nhal_2215 NC_013960.1 2295204 2296676 D KEGG: noc:Noc_0772 glucose-6-phosphate 1-dehydrogenase; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; glucose-6-phosphate 1-dehydrogenase 2295204..2296676 Nitrosococcus halophilus Nc4 8917210 YP_003527694.1 CDS Nhal_2216 NC_013960.1 2296689 2297765 D TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; KEGG: noc:Noc_0773 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 2296689..2297765 Nitrosococcus halophilus Nc4 8917211 YP_003527695.1 CDS Nhal_2217 NC_013960.1 2297758 2298636 D TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase; KEGG: noc:Noc_0774 glucose-1-phosphate thymidylyltransferase, long form; glucose-1-phosphate thymidylyltransferase 2297758..2298636 Nitrosococcus halophilus Nc4 8917212 YP_003527696.1 CDS Nhal_2218 NC_013960.1 2298643 2299188 D KEGG: noc:Noc_0775 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 2298643..2299188 Nitrosococcus halophilus Nc4 8917213 YP_003527697.1 CDS Nhal_2219 NC_013960.1 2299185 2300075 D KEGG: noc:Noc_0776 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase 2299185..2300075 Nitrosococcus halophilus Nc4 8917214 YP_003527698.1 CDS Nhal_2220 NC_013960.1 2300086 2302098 R KEGG: noc:Noc_0777 asparagine synthase, glutamine-hydrolyzing; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II; asparagine synthase complement(2300086..2302098) Nitrosococcus halophilus Nc4 8917215 YP_003527699.1 CDS Nhal_2221 NC_013960.1 2302241 2303323 R PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; KEGG: noc:Noc_0778 aspartate/ornithine carbamoyltransferase; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain-containing protein complement(2302241..2303323) Nitrosococcus halophilus Nc4 8917216 YP_003527700.1 CDS Nhal_2222 NC_013960.1 2303317 2303439 R hypothetical protein complement(2303317..2303439) Nitrosococcus halophilus Nc4 8917217 YP_003527701.1 CDS Nhal_2223 NC_013960.1 2303433 2304881 R PFAM: Na+/solute symporter; KEGG: noc:Noc_0779 Na+/solute symporter; Na+/solute symporter complement(2303433..2304881) Nitrosococcus halophilus Nc4 8917218 YP_003527702.1 CDS Nhal_2224 NC_013960.1 2304878 2305609 R PFAM: isochorismatase hydrolase; KEGG: noc:Noc_0780 isochorismatase hydrolase; isochorismatase hydrolase complement(2304878..2305609) Nitrosococcus halophilus Nc4 8917219 YP_003527703.1 CDS Nhal_2225 NC_013960.1 2305628 2306866 R KEGG: noc:Noc_0781 allantoate amidohydrolase; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; peptidase dimerisation domain protein; hydantoinase/carbamoylase family amidase complement(2305628..2306866) Nitrosococcus halophilus Nc4 8917220 YP_003527704.1 CDS Nhal_2226 NC_013960.1 2306866 2307357 R KEGG: noc:Noc_0782 hypothetical protein; hypothetical protein complement(2306866..2307357) Nitrosococcus halophilus Nc4 8917221 YP_003527705.1 CDS Nhal_2227 NC_013960.1 2307493 2309085 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: noc:Noc_0783 signal transduction histidine kinase; ATP-binding region ATPase domain-containing protein 2307493..2309085 Nitrosococcus halophilus Nc4 8917222 YP_003527706.1 CDS Nhal_2228 NC_013960.1 2309082 2309783 D KEGG: noc:Noc_0784 hypothetical protein; hypothetical protein 2309082..2309783 Nitrosococcus halophilus Nc4 8917223 YP_003527707.1 CDS Nhal_2229 NC_013960.1 2309776 2311137 D PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: noc:Noc_0785 fis family two component transcriptional regulator; Fis family transcriptional regulator 2309776..2311137 Nitrosococcus halophilus Nc4 8917224 YP_003527708.1 CDS Nhal_2230 NC_013960.1 2311200 2311517 D TIGRFAM: F1/F0 ATPase, Methanosarcina type, subunit 2; KEGG: mmw:Mmwyl1_1957 hypothetical protein; F1/F0 ATPase, Methanosarcina type subunit 2 2311200..2311517 Nitrosococcus halophilus Nc4 8917225 YP_003527709.1 CDS Nhal_2231 NC_013960.1 2311579 2312106 D KEGG: rpe:RPE_2066 protein of unknown function DUF1568; hypothetical protein 2311579..2312106 Nitrosococcus halophilus Nc4 8917226 YP_003527710.1 CDS Nhal_2232 NC_013960.1 2312110 2312205 D hypothetical protein 2312110..2312205 Nitrosococcus halophilus Nc4 8917227 YP_003527711.1 CDS Nhal_2233 NC_013960.1 2312460 2313203 D PFAM: protein of unknown function DUF1555; KEGG: nmu:Nmul_A1890 hypothetical protein; hypothetical protein 2312460..2313203 Nitrosococcus halophilus Nc4 8917228 YP_003527712.1 CDS Nhal_2234 NC_013960.1 2313284 2315137 R PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: noc:Noc_0787 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8 and S53 subtilisin kexin sedolisin complement(2313284..2315137) Nitrosococcus halophilus Nc4 8917229 YP_003527713.1 CDS Nhal_2235 NC_013960.1 2315499 2316410 R KEGG: lpc:LPC_2226 ATP synthase subunit gamma C-terminus; ATP synthase subunit gamma C-terminus complement(2315499..2316410) Nitrosococcus halophilus Nc4 8917230 YP_003527714.1 CDS Nhal_2236 NC_013960.1 2316407 2317903 R KEGG: mca:MCA2707 F0F1 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1 subunit alpha; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; ATP synthase F1 subunit alpha complement(2316407..2317903) Nitrosococcus halophilus Nc4 8917231 YP_003527715.1 CDS Nhal_2237 NC_013960.1 2317887 2318642 R PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: mca:MCA2701 ATP synthase F1 subunit delta; H+transporting two-sector ATPase B/B' subunit complement(2317887..2318642) Nitrosococcus halophilus Nc4 8917232 YP_003527716.1 CDS Nhal_2238 NC_013960.1 2318707 2318982 R TIGRFAM: ATP synthase F0 C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: lpc:LPC_2223 hypothetical protein; ATP synthase F0 subunit C complement(2318707..2318982) Nitrosococcus halophilus Nc4 8917233 YP_003527717.1 CDS Nhal_2239 NC_013960.1 2318986 2319678 R TIGRFAM: ATP synthase F0 subunit alpha; PFAM: H+transporting two-sector ATPase subunit alpha; KEGG: ppd:Ppro_0848 F0F1 ATP synthase subunit A; ATP synthase F0 subunit alpha complement(2318986..2319678) Nitrosococcus halophilus Nc4 8917234 YP_003527718.1 CDS Nhal_2240 NC_013960.1 2319682 2319957 R KEGG: ppd:Ppro_0849 ATP synthase protein I; ATP synthase protein I complement(2319682..2319957) Nitrosococcus halophilus Nc4 8917235 YP_003527719.1 CDS Nhal_2241 NC_013960.1 2319954 2320355 R PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: lpc:LPC_2220 hypothetical protein; H+transporting two-sector ATPase delta/subunit epsilon complement(2319954..2320355) Nitrosococcus halophilus Nc4 8917236 YP_003527720.1 CDS Nhal_2242 NC_013960.1 2320352 2321752 R KEGG: mca:MCA1556 F0F1 ATP synthase subunit beta; TIGRFAM: ATP synthase F1 subunit beta; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; ATP synthase F1 subunit beta complement(2320352..2321752) Nitrosococcus halophilus Nc4 8917237 YP_003527721.1 CDS Nhal_2243 NC_013960.1 2322178 2322372 D KEGG: maq:Maqu_0849 hypothetical protein; hypothetical protein 2322178..2322372 Nitrosococcus halophilus Nc4 8917238 YP_003527722.1 CDS Nhal_2244 NC_013960.1 2322502 2323050 R TIGRFAM: ribosomal subunit interface protein; PFAM: Cold-shock protein DNA-binding; KEGG: noc:Noc_2438 sigma 54 modulation protein/ribosomal protein S30EA; ribosomal subunit interface protein complement(2322502..2323050) Nitrosococcus halophilus Nc4 8917239 YP_003527723.1 CDS Nhal_2245 NC_013960.1 2323396 2323641 D KEGG: tgr:Tgr7_1863 hypothetical protein; hypothetical protein 2323396..2323641 Nitrosococcus halophilus Nc4 8917240 YP_003527724.1 CDS Nhal_2246 NC_013960.1 2324071 2324382 R KEGG: mca:MCA0564 hypothetical protein; hypothetical protein complement(2324071..2324382) Nitrosococcus halophilus Nc4 8917241 YP_003527725.1 CDS Nhal_2247 NC_013960.1 2324547 2324813 D KEGG: afw:Anae109_1578 hypothetical protein; hypothetical protein 2324547..2324813 Nitrosococcus halophilus Nc4 8917242 YP_003527726.1 CDS Nhal_2248 NC_013960.1 2324864 2325100 D PFAM: protein of unknown function DUF37; KEGG: noc:Noc_2437 hypothetical protein; hypothetical protein 2324864..2325100 Nitrosococcus halophilus Nc4 8917243 YP_003527727.1 CDS Nhal_2249 NC_013960.1 2325197 2325811 D PFAM: MerR family transcriptional regulator; Resolvase domain; KEGG: xfm:Xfasm12_1564 hypothetical protein; MerR family transcriptional regulator 2325197..2325811 Nitrosococcus halophilus Nc4 8917244 YP_003527728.1 CDS Nhal_2250 NC_013960.1 2325789 2325926 D KEGG: noc:Noc_0401 transposase; transposase 2325789..2325926 Nitrosococcus halophilus Nc4 8917245 YP_003527729.1 CDS Nhal_2251 NC_013960.1 2325914 2326771 D PFAM: peptidase M23; KEGG: noc:Noc_2436 peptidase M23B; peptidase M23 2325914..2326771 Nitrosococcus halophilus Nc4 8917246 YP_003527730.1 CDS Nhal_2252 NC_013960.1 2326857 2327321 R KEGG: noc:Noc_2435 hypothetical protein; hypothetical protein complement(2326857..2327321) Nitrosococcus halophilus Nc4 8917247 YP_003527731.1 CDS Nhal_2253 NC_013960.1 2327561 2328013 D KEGG: TCHH; trichohyalin; hypothetical protein 2327561..2328013 Nitrosococcus halophilus Nc4 8917248 YP_003527732.1 CDS Nhal_2257 NC_013960.1 2332017 2332739 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sfr:Sfri_1813 ABC transporter; ABC transporter complement(2332017..2332739) Nitrosococcus halophilus Nc4 8917252 YP_003527733.1 CDS Nhal_2258 NC_013960.1 2332739 2334022 R TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: sat:SYN_00852 periplasmic component of efflux system; RND family efflux transporter MFP subunit complement(2332739..2334022) Nitrosococcus halophilus Nc4 8917253 YP_003527734.1 CDS Nhal_2259 NC_013960.1 2334475 2335194 D KEGG: noc:Noc_2433 hypothetical protein; hypothetical protein 2334475..2335194 Nitrosococcus halophilus Nc4 8917254 YP_003527735.1 CDS Nhal_2260 NC_013960.1 2335361 2336079 D hypothetical protein join(2335361..2335639,2335639..2336079) Nitrosococcus halophilus Nc4 8917255 YP_003527736.1 CDS Nhal_2261 NC_013960.1 2336318 2336497 R hypothetical protein complement(2336318..2336497) Nitrosococcus halophilus Nc4 8917256 YP_003527737.1 CDS Nhal_2262 NC_013960.1 2336934 2337305 D PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: ecd:ECDH10B_1970 solute/DNA competence effector; ProQ activator of osmoprotectant transporter ProP 2336934..2337305 Nitrosococcus halophilus Nc4 8917257 YP_003527738.1 CDS Nhal_2263 NC_013960.1 2337348 2337623 R PFAM: YcfA family protein; KEGG: plu:plu2950 hypothetical protein; YcfA family protein complement(2337348..2337623) Nitrosococcus halophilus Nc4 8917258 YP_003527739.1 CDS Nhal_2264 NC_013960.1 2337623 2337976 R KEGG: plu:plu2951 hypothetical protein; hypothetical protein complement(2337623..2337976) Nitrosococcus halophilus Nc4 8917259 YP_003527740.1 CDS Nhal_2265 NC_013960.1 2338466 2338882 D KEGG: lpc:LPC_0212 hypothetical protein; hypothetical protein 2338466..2338882 Nitrosococcus halophilus Nc4 8917260 YP_003527741.1 CDS Nhal_2266 NC_013960.1 2339491 2340378 D KEGG: noc:Noc_2050 hypothetical protein; hypothetical protein 2339491..2340378 Nitrosococcus halophilus Nc4 8917261 YP_003527742.1 CDS Nhal_2267 NC_013960.1 2340903 2341157 D hypothetical protein 2340903..2341157 Nitrosococcus halophilus Nc4 8917262 YP_003527743.1 CDS Nhal_2268 NC_013960.1 2341478 2342458 D PFAM: aminoglycoside phosphotransferase; KEGG: noc:Noc_2432 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 2341478..2342458 Nitrosococcus halophilus Nc4 8917264 YP_003527744.1 CDS Nhal_2269 NC_013960.1 2342455 2343147 D PFAM: nucleotidyl transferase; KEGG: noc:Noc_2431 nucleotidyl transferase; nucleotidyl transferase 2342455..2343147 Nitrosococcus halophilus Nc4 8917265 YP_003527745.1 CDS Nhal_2270 NC_013960.1 2343150 2344064 R KEGG: noc:Noc_2430 ornithine carbamoyltransferase; TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; ornithine carbamoyltransferase complement(2343150..2344064) Nitrosococcus halophilus Nc4 8917266 YP_003527746.1 CDS Nhal_2271 NC_013960.1 2344092 2345495 R TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: noc:Noc_2429 acetylornithine and succinylornithine aminotransferase; acetylornithine and succinylornithine aminotransferase complement(2344092..2345495) Nitrosococcus halophilus Nc4 8917267 YP_003527747.1 CDS Nhal_2272 NC_013960.1 2345653 2346234 R PFAM: manganese and iron superoxide dismutase; KEGG: noc:Noc_2428 superoxide dismutase; superoxide dismutase complement(2345653..2346234) Nitrosococcus halophilus Nc4 8917268 YP_003527748.1 CDS Nhal_2273 NC_013960.1 2346465 2346794 D TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: noc:Noc_2427 glutaredoxin-like protein; glutaredoxin-like protein 2346465..2346794 Nitrosococcus halophilus Nc4 8917269 YP_003527749.1 CDS Nhal_2274 NC_013960.1 2346968 2347291 D PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: noc:Noc_2426 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS 2346968..2347291 Nitrosococcus halophilus Nc4 8917270 YP_003527750.1 CDS Nhal_2275 NC_013960.1 2347431 2349692 D KEGG: noc:Noc_2425 ATP-dependent Clp protease; TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; ATPase AAA; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: ATPase AAA; ATP-dependent Clp protease ATP-binding subunit clpA 2347431..2349692 Nitrosococcus halophilus Nc4 8917271 YP_003527751.1 CDS Nhal_2276 NC_013960.1 2349820 2350311 D PFAM: ferric-uptake regulator; KEGG: noc:Noc_2424 ferric-uptake regulator; ferric-uptake regulator 2349820..2350311 Nitrosococcus halophilus Nc4 8917272 YP_003527752.1 CDS Nhal_2277 NC_013960.1 2350367 2351257 D PFAM: periplasmic solute binding protein; KEGG: noc:Noc_2423 periplasmic solute binding protein; periplasmic solute binding protein 2350367..2351257 Nitrosococcus halophilus Nc4 8917273 YP_003527753.1 CDS Nhal_2278 NC_013960.1 2351254 2351991 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_2422 ABC transporter ATPase; ABC transporter 2351254..2351991 Nitrosococcus halophilus Nc4 8917274 YP_003527754.1 CDS Nhal_2279 NC_013960.1 2351992 2352837 D PFAM: ABC transporter; transporter permease protein; KEGG: noc:Noc_2421 ABC Mn2+/Zn2+ transporterinner membrane subunit; ABC transporter 2351992..2352837 Nitrosococcus halophilus Nc4 8917275 YP_003527755.1 CDS Nhal_2280 NC_013960.1 2352879 2353325 D PFAM: protein of unknown function DUF29; KEGG: msl:Msil_2916 protein of unknown function DUF29; hypothetical protein 2352879..2353325 Nitrosococcus halophilus Nc4 8917276 YP_003527756.1 CDS Nhal_2281 NC_013960.1 2353348 2354058 R PFAM: ERCC4 domain protein; helix-hairpin-helix motif; SMART: DNA-binding protein; KEGG: tgr:Tgr7_2438 ERCC4 domain-containing protein; ERCC4 domain-containing protein complement(2353348..2354058) Nitrosococcus halophilus Nc4 8917277 YP_003527757.1 CDS Nhal_2282 NC_013960.1 2354308 2354889 D PFAM: NUDIX hydrolase; KEGG: noc:Noc_2420 ADP-ribose diphosphatase NudE; NUDIX hydrolase 2354308..2354889 Nitrosococcus halophilus Nc4 8917278 YP_003527758.1 CDS Nhal_2283 NC_013960.1 2354873 2355712 D TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: noc:Noc_2419 3(2),5 -bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase 2354873..2355712 Nitrosococcus halophilus Nc4 8917279 YP_003527759.1 CDS Nhal_2284 NC_013960.1 2355853 2356062 D hypothetical protein 2355853..2356062 Nitrosococcus halophilus Nc4 8917280 YP_003527760.1 CDS Nhal_2285 NC_013960.1 2356025 2357413 R PFAM: phosphate-selective porin O and P; KEGG: noc:Noc_2418 phosphate-selective porin O and P; phosphate-selective porin O and P complement(2356025..2357413) Nitrosococcus halophilus Nc4 8917281 YP_003527761.1 CDS Nhal_2286 NC_013960.1 2357750 2359222 R PFAM: phosphate-selective porin O and P; KEGG: noc:Noc_2417 phosphate-selective porin O and P; phosphate-selective porin O and P complement(2357750..2359222) Nitrosococcus halophilus Nc4 8917282 YP_003527762.1 CDS Nhal_2287 NC_013960.1 2359642 2360331 D KEGG: noc:Noc_2401 phosphate regulon transcriptional regulatory protein PhoB; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; phosphate regulon transcriptional regulatory protein PhoB 2359642..2360331 Nitrosococcus halophilus Nc4 8917283 YP_003527763.1 CDS Nhal_2288 NC_013960.1 2360348 2361658 D KEGG: noc:Noc_2400 signal transduction histidine kinase, PhoR; TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; phosphate regulon sensor kinase PhoR 2360348..2361658 Nitrosococcus halophilus Nc4 8917284 YP_003527764.1 CDS Nhal_2289 NC_013960.1 2361830 2362810 D TIGRFAM: phosphate binding protein; KEGG: noc:Noc_2399 phosphate binding protein; phosphate binding protein 2361830..2362810 Nitrosococcus halophilus Nc4 8917285 YP_003527765.1 CDS Nhal_2290 NC_013960.1 2362916 2365201 D PFAM: binding-protein-dependent transporters inner membrane component; KEGG: noc:Noc_2398 ABC transporter inner membrane subunit; binding-protein-dependent transporters inner membrane component 2362916..2365201 Nitrosococcus halophilus Nc4 8917286 YP_003527766.1 CDS Nhal_2291 NC_013960.1 2365241 2366893 D TIGRFAM: phosphate ABC transporter inner membrane subunit PstA; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: noc:Noc_2397 ABC phosphate transporter inner membrane subunit; phosphate ABC transporter permease 2365241..2366893 Nitrosococcus halophilus Nc4 8917287 YP_003527767.1 CDS Nhal_2292 NC_013960.1 2366910 2367761 D KEGG: noc:Noc_2396 ABC phosphate transporter ATPase subunit; TIGRFAM: phosphate ABC transporter ATPase; PFAM: ABC transporter related; SMART: ATPase AAA; phosphate ABC transporter ATPase 2366910..2367761 Nitrosococcus halophilus Nc4 8917288 YP_003527768.1 CDS Nhal_2293 NC_013960.1 2367798 2368511 D TIGRFAM: phosphate transporter regulatory protein PhoU; PFAM: PhoU family protein; KEGG: noc:Noc_2395 phosphate transporter PhoU; phosphate transporter regulatory protein PhoU 2367798..2368511 Nitrosococcus halophilus Nc4 8917289 YP_003527769.1 CDS Nhal_2294 NC_013960.1 2368637 2370145 D PFAM: Ppx/GppA phosphatase; KEGG: noc:Noc_2394 exopolyphosphatase; guanosine-5'-triphosphate,3'-diphosphate diphosphatase 2368637..2370145 Nitrosococcus halophilus Nc4 8917290 YP_003527770.1 CDS Nhal_2295 NC_013960.1 2370148 2371113 D PFAM: adenylate cyclase; KEGG: noc:Noc_2393 adenylate cyclase; adenylate cyclase 2370148..2371113 Nitrosococcus halophilus Nc4 8917291 YP_003527771.1 CDS Nhal_2296 NC_013960.1 2371758 2372003 D PFAM: Domain of unknown function DUF1902; KEGG: tgr:Tgr7_1809 domain of unknown function DUF1902; hypothetical protein 2371758..2372003 Nitrosococcus halophilus Nc4 8917292 YP_003527772.1 CDS Nhal_2297 NC_013960.1 2372594 2372695 R hypothetical protein complement(2372594..2372695) Nitrosococcus halophilus Nc4 8917293 YP_003527773.1 CDS Nhal_2298 NC_013960.1 2373692 2375932 D KEGG: rso:RSc0831 hypothetical protein; hypothetical protein 2373692..2375932 Nitrosococcus halophilus Nc4 8917294 YP_003527774.1 CDS Nhal_2299 NC_013960.1 2375989 2376306 D KEGG: sme:SMa1784 hypothetical protein; hypothetical protein 2375989..2376306 Nitrosococcus halophilus Nc4 8917295 YP_003527775.1 CDS Nhal_2300 NC_013960.1 2376396 2377013 D KEGG: hap:HAPS_1905 phosphoglycolate phosphatase; hypothetical protein 2376396..2377013 Nitrosococcus halophilus Nc4 8917296 YP_003527776.1 CDS Nhal_2301 NC_013960.1 2377010 2377633 D KEGG: hap:HAPS_1906 predicted amidophosphoribosyltransferase; amidophosphoribosyltransferase 2377010..2377633 Nitrosococcus halophilus Nc4 8917297 YP_003527777.1 CDS Nhal_2302 NC_013960.1 2377633 2378607 D PFAM: SMF family protein; KEGG: hap:HAPS_1907 Rossmann fold nucleotide-binding protein involved in DNA uptake; SMF family protein 2377633..2378607 Nitrosococcus halophilus Nc4 8917298 YP_003527778.1 CDS Nhal_2303 NC_013960.1 2378722 2378922 D KEGG: afr:AFE_0072 hypothetical protein; hypothetical protein 2378722..2378922 Nitrosococcus halophilus Nc4 8917299 YP_003527779.1 CDS Nhal_2304 NC_013960.1 2378919 2379173 D KEGG: rpb:RPB_2524 hypothetical protein; hypothetical protein 2378919..2379173 Nitrosococcus halophilus Nc4 8917300 YP_003527780.1 CDS Nhal_2305 NC_013960.1 2379327 2379653 D KEGG: geo:Geob_2588 hypothetical protein; hypothetical protein 2379327..2379653 Nitrosococcus halophilus Nc4 8917301 YP_003527781.1 CDS Nhal_2306 NC_013960.1 2379723 2380229 D hypothetical protein 2379723..2380229 Nitrosococcus halophilus Nc4 8917302 YP_003527782.1 CDS Nhal_2307 NC_013960.1 2380369 2381115 D KEGG: gur:Gura_3509 methyltransferase type 11; type 11 methyltransferase 2380369..2381115 Nitrosococcus halophilus Nc4 8917303 YP_003527783.1 CDS Nhal_2308 NC_013960.1 2381337 2381915 D PFAM: sigma-70 region 4 domain protein; KEGG: hdu:HD2030 hypothetical protein; sigma-70 region 4 domain-containing protein 2381337..2381915 Nitrosococcus halophilus Nc4 8917304 YP_003527784.1 CDS Nhal_2309 NC_013960.1 2382004 2382252 D hypothetical protein 2382004..2382252 Nitrosococcus halophilus Nc4 8917305 YP_003527785.1 CDS Nhal_2310 NC_013960.1 2382279 2382926 D KEGG: hdu:HD2030 hypothetical protein; hypothetical protein 2382279..2382926 Nitrosococcus halophilus Nc4 8917306 YP_003527786.1 CDS Nhal_2311 NC_013960.1 2383913 2385985 R PFAM: polyphosphate kinase; KEGG: noc:Noc_2388 polyphosphate kinase; polyphosphate kinase complement(2383913..2385985) Nitrosococcus halophilus Nc4 8917307 YP_003527787.1 CDS Nhal_2312 NC_013960.1 2386015 2386296 R PFAM: BolA family protein; KEGG: noc:Noc_2387 BolA-like protein; BolA family protein complement(2386015..2386296) Nitrosococcus halophilus Nc4 8917308 YP_003527788.1 CDS Nhal_2313 NC_013960.1 2386293 2386592 R PFAM: YCII-related; KEGG: noc:Noc_2386 hypothetical protein; YCII-like protein complement(2386293..2386592) Nitrosococcus halophilus Nc4 8917309 YP_003527789.1 CDS Nhal_2314 NC_013960.1 2386595 2387209 R PFAM: Intracellular septation protein A; KEGG: noc:Noc_2385 intracellular septation protein A; Intracellular septation protein A complement(2386595..2387209) Nitrosococcus halophilus Nc4 8917310 YP_003527790.1 CDS Nhal_2315 NC_013960.1 2387284 2388120 D PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: noc:Noc_2384 PHP family metal-dependent phosphoesterase; PHP domain-containing protein 2387284..2388120 Nitrosococcus halophilus Nc4 8917311 YP_003527791.1 CDS Nhal_2316 NC_013960.1 2388139 2388768 D TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: noc:Noc_2383 translation factor, SUA5/YciO/YrdC/YwlC; Sua5/YciO/YrdC/YwlC family protein 2388139..2388768 Nitrosococcus halophilus Nc4 8917312 YP_003527792.1 CDS Nhal_2317 NC_013960.1 2388834 2389559 D PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: noc:Noc_2382 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 2388834..2389559 Nitrosococcus halophilus Nc4 8917313 YP_003527793.1 CDS Nhal_2318 NC_013960.1 2389624 2392221 D KEGG: noc:Noc_2381 ATP-dependent Clp protease; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA; ATPase AAA central domain protein; Torsin; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: ATPase AAA; ATP-dependent chaperone ClpB 2389624..2392221 Nitrosococcus halophilus Nc4 8917314 YP_003527794.1 CDS Nhal_2319 NC_013960.1 2392327 2392563 R TIGRFAM: FmdB family transcriptional regulator; KEGG: mca:MCA1259 hypothetical protein; FmdB family transcriptional regulator complement(2392327..2392563) Nitrosococcus halophilus Nc4 8917315 YP_003527795.1 CDS Nhal_2320 NC_013960.1 2392588 2393187 R PFAM: carbonic anhydrase; KEGG: plu:plu2248 hypothetical protein; carbonic anhydrase complement(2392588..2393187) Nitrosococcus halophilus Nc4 8917316 YP_003527796.1 CDS Nhal_2321 NC_013960.1 2393240 2395462 R PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: noc:Noc_2380 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(2393240..2395462) Nitrosococcus halophilus Nc4 8917317 YP_003527797.1 CDS Nhal_2322 NC_013960.1 2395679 2396062 D PFAM: invasion gene expression up-regulator SirB; KEGG: noc:Noc_2379 invasion gene expression up-regulator, SirB; invasion gene expression up-regulator SirB 2395679..2396062 Nitrosococcus halophilus Nc4 8917318 YP_003527798.1 CDS Nhal_2323 NC_013960.1 2396107 2396964 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: tgr:Tgr7_1140 short-chain dehydrogenase/reductase; short-chain dehydrogenase/reductase SDR complement(2396107..2396964) Nitrosococcus halophilus Nc4 8917319 YP_003527799.1 CDS Nhal_2324 NC_013960.1 2397276 2397677 D TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: noc:Noc_2378 flagellar basal-body rod protein FlgB; flagellar basal-body rod protein FlgB 2397276..2397677 Nitrosococcus halophilus Nc4 8917320 YP_003527800.1 CDS Nhal_2325 NC_013960.1 2397682 2398095 D TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: noc:Noc_2377 flagellar basal-body rod protein FlgC; flagellar basal-body rod protein FlgC 2397682..2398095 Nitrosococcus halophilus Nc4 8917321 YP_003527801.1 CDS Nhal_2326 NC_013960.1 2398118 2398798 D PFAM: flagellar hook capping protein; KEGG: noc:Noc_2376 flagellar hook capping protein; flagellar hook capping protein 2398118..2398798 Nitrosococcus halophilus Nc4 8917322 YP_003527802.1 CDS Nhal_2327 NC_013960.1 2398823 2400100 D PFAM: flagellar basal body FlaE domain protein; flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: noc:Noc_2375 hypothetical protein; flagellar basal body FlaE domain-containing protein 2398823..2400100 Nitrosococcus halophilus Nc4 8917323 YP_003527803.1 CDS Nhal_2328 NC_013960.1 2400128 2400868 D TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: protein of unknown function DUF1078 domain protein; KEGG: noc:Noc_2374 hypothetical protein; flagellar basal-body rod protein FlgF 2400128..2400868 Nitrosococcus halophilus Nc4 8917324 YP_003527804.1 CDS Nhal_2329 NC_013960.1 2400913 2401698 D TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: noc:Noc_2373 hypothetical protein; flagellar basal-body rod protein FlgG 2400913..2401698 Nitrosococcus halophilus Nc4 8917325 YP_003527805.1 CDS Nhal_2330 NC_013960.1 2401815 2402612 D PFAM: flagellar L-ring protein; KEGG: noc:Noc_2372 flagellar L-ring protein; flagellar L-ring protein 2401815..2402612 Nitrosococcus halophilus Nc4 8917326 YP_003527806.1 CDS Nhal_2331 NC_013960.1 2402673 2403776 D PFAM: flagellar P-ring protein; KEGG: noc:Noc_2371 flagellar basal body P-ring protein; flagellar P-ring protein 2402673..2403776 Nitrosococcus halophilus Nc4 8917327 YP_003527807.1 CDS Nhal_2332 NC_013960.1 2403855 2404772 D KEGG: noc:Noc_2370 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; flagellar rod assembly protein/muramidase FlgJ 2403855..2404772 Nitrosococcus halophilus Nc4 8917328 YP_003527808.1 CDS Nhal_2333 NC_013960.1 2404877 2406820 D TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: noc:Noc_2369 hypothetical protein; flagellar hook-associated protein FlgK 2404877..2406820 Nitrosococcus halophilus Nc4 8917329 YP_003527809.1 CDS Nhal_2334 NC_013960.1 2406824 2408026 D TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: noc:Noc_2368 flagellin-like; flagellar hook-associated protein 3 2406824..2408026 Nitrosococcus halophilus Nc4 8917330 YP_003527810.1 CDS Nhal_2335 NC_013960.1 2408043 2409272 D PFAM: EAL domain protein; metal-dependent hydrolase HDOD; SMART: EAL domain protein; KEGG: tgr:Tgr7_0322 signal transduction protein; EAL domain-containing protein 2408043..2409272 Nitrosococcus halophilus Nc4 8917331 YP_003527811.1 CDS Nhal_2336 NC_013960.1 2409607 2411076 D PFAM: flagellin domain protein; flagellin hook IN repeat protein; KEGG: lpn:lpg1340 flagellin; flagellin domain-containing protein 2409607..2411076 Nitrosococcus halophilus Nc4 8917332 YP_003527812.1 CDS Nhal_2337 NC_013960.1 2411154 2411552 D PFAM: flagellar protein FlaG protein; KEGG: noc:Noc_2366 flagellar protein FlaG protein; flagellar protein FlaG protein 2411154..2411552 Nitrosococcus halophilus Nc4 8917333 YP_003527813.1 CDS Nhal_2338 NC_013960.1 2411586 2413625 D PFAM: flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; flagellar hook-associated protein 2 domain protein; KEGG: noc:Noc_2365 flagellar hook-associated protein 2; flagellar hook-associated 2 domain-containing protein 2411586..2413625 Nitrosococcus halophilus Nc4 8917334 YP_003527814.1 CDS Nhal_2339 NC_013960.1 2413992 2414435 D TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS; KEGG: noc:Noc_2364 flagellar protein FliS; flagellar protein FliS 2413992..2414435 Nitrosococcus halophilus Nc4 8917335 YP_003527815.1 CDS Nhal_2340 NC_013960.1 2414499 2414804 D KEGG: noc:Noc_2363 hypothetical protein; hypothetical protein 2414499..2414804 Nitrosococcus halophilus Nc4 8917336 YP_003527816.1 CDS Nhal_2341 NC_013960.1 2414877 2415509 D KEGG: tgr:Tgr7_1974 hypothetical protein; hypothetical protein 2414877..2415509 Nitrosococcus halophilus Nc4 8917337 YP_003527817.1 CDS Nhal_2342 NC_013960.1 2415612 2417054 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: noc:Noc_2362 sigma-54 dependent trancsriptional regulator; Fis family transcriptional regulator 2415612..2417054 Nitrosococcus halophilus Nc4 8917338 YP_003527818.1 CDS Nhal_2343 NC_013960.1 2417262 2418293 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: ATPase AAA; KEGG: noc:Noc_2361 two component sigma-54 specific, transcriptional regulator, fis famliy; Fis family transcriptional regulator 2417262..2418293 Nitrosococcus halophilus Nc4 8917339 YP_003527819.1 CDS Nhal_2344 NC_013960.1 2418347 2418667 D TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: noc:Noc_2360 flagellar hook-basal body complex protein FliE; flagellar hook-basal body complex subunit FliE 2418347..2418667 Nitrosococcus halophilus Nc4 8917340 YP_003527820.1 CDS Nhal_2345 NC_013960.1 2418802 2420502 D TIGRFAM: flagellar M-ring protein FliF; PFAM: flagellar M-ring domain protein; secretory protein YscJ/FliF family protein; KEGG: noc:Noc_2359 flagellar FliF M-ring protein; flagellar M-ring protein FliF 2418802..2420502 Nitrosococcus halophilus Nc4 8917341 YP_003527821.1 CDS Nhal_2346 NC_013960.1 2420495 2421499 D TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; KEGG: noc:Noc_2358 flagellar motor switch protein FliG; flagellar motor switch protein FliG 2420495..2421499 Nitrosococcus halophilus Nc4 8917342 YP_003527822.1 CDS Nhal_2347 NC_013960.1 2421486 2422220 D PFAM: flagellar assembly protein FliH; KEGG: noc:Noc_2357 flagellar assembly protein FliH; flagellar assembly protein FliH 2421486..2422220 Nitrosococcus halophilus Nc4 8917343 YP_003527823.1 CDS Nhal_2348 NC_013960.1 2422213 2423655 D KEGG: noc:Noc_2356 flagellar biosynthesis/type III secretory pathway ATPase, FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; SMART: AAA ATPase; ATPase, FliI/YscN family 2422213..2423655 Nitrosococcus halophilus Nc4 8917344 YP_003527824.1 CDS Nhal_2349 NC_013960.1 2423652 2424104 D TIGRFAM: flagellar export protein FliJ; PFAM: flagellar FliJ protein; KEGG: noc:Noc_2355 flagellar biosynthesis chaperone FliJ-like protein; flagellar export protein FliJ 2423652..2424104 Nitrosococcus halophilus Nc4 8917345 YP_003527825.1 CDS Nhal_2350 NC_013960.1 2424291 2425940 D PFAM: flagellar hook-length control protein; KEGG: noc:Noc_2354 flagellar hook-length control protein; flagellar hook-length control protein 2424291..2425940 Nitrosococcus halophilus Nc4 8917346 YP_003527826.1 CDS Nhal_2351 NC_013960.1 2425945 2426643 R KEGG: noc:Noc_2353 orotidine-5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase complement(2425945..2426643) Nitrosococcus halophilus Nc4 8917347 YP_003527827.1 CDS Nhal_2352 NC_013960.1 2426709 2427035 R PFAM: hypothetical protein; KEGG: cbd:CBUD_A0056 DNA-binding protein; hypothetical protein complement(2426709..2427035) Nitrosococcus halophilus Nc4 8917348 YP_003527828.1 CDS Nhal_2353 NC_013960.1 2427225 2427776 D KEGG: dat:HRM2_34090 hypothetical protein; hypothetical protein 2427225..2427776 Nitrosococcus halophilus Nc4 8917349 YP_003527829.1 CDS Nhal_2354 NC_013960.1 2427931 2428649 R hypothetical protein complement(join(2427931..2428371,2428371..2428649)) Nitrosococcus halophilus Nc4 8917350 YP_003527830.1 CDS Nhal_2355 NC_013960.1 2428872 2429297 D TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: nucleotidyltransferase substrate binding protein HI0074; KEGG: gbm:Gbem_1476 nucleotidyltransferase substrate binding protein, HI0074 family; nucleotidyltransferase substrate binding protein 2428872..2429297 Nitrosococcus halophilus Nc4 8917351 YP_003527831.1 CDS Nhal_2356 NC_013960.1 2429294 2429605 D PFAM: DNA polymerase beta domain protein region; KEGG: gur:Gura_1133 DNA polymerase subunit beta; DNA polymerase beta domain-containing protein 2429294..2429605 Nitrosococcus halophilus Nc4 8917352 YP_003527832.1 CDS Nhal_2357 NC_013960.1 2429785 2430900 D KEGG: noc:Noc_2352 queuine tRNA-ribosyltransferase; TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; PFAM: queuine/other tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 2429785..2430900 Nitrosococcus halophilus Nc4 8917353 YP_003527833.1 CDS Nhal_2358 NC_013960.1 2430935 2431279 D TIGRFAM: preprotein translocase subunit YajC; PFAM: YajC family protein; KEGG: noc:Noc_2351 preprotein translocase subunit, YajC; preprotein translocase subunit YajC 2430935..2431279 Nitrosococcus halophilus Nc4 8917354 YP_003527834.1 CDS Nhal_2359 NC_013960.1 2431300 2433156 D TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: noc:Noc_2350 preprotein translocase subunit SecD; protein-export membrane protein SecD 2431300..2433156 Nitrosococcus halophilus Nc4 8917355 YP_003527835.1 CDS Nhal_2360 NC_013960.1 2433166 2434110 D TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: noc:Noc_2349 preprotein translocase subunit SecF; protein-export membrane protein SecF 2433166..2434110 Nitrosococcus halophilus Nc4 8917356 YP_003527836.1 CDS Nhal_2361 NC_013960.1 2434776 2435279 D KEGG: noc:Noc_2348 hypothetical protein; hypothetical protein 2434776..2435279 Nitrosococcus halophilus Nc4 8917357 YP_003527837.1 CDS Nhal_2362 NC_013960.1 2435294 2436667 D TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: noc:Noc_2347 UDP-N-acetylmuramate, L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; UDP-N-acetylmuramate 2435294..2436667 Nitrosococcus halophilus Nc4 8917358 YP_003527838.1 CDS Nhal_2363 NC_013960.1 2436664 2437278 D TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: noc:Noc_2346 phenylacrylic acid decarboxylase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 2436664..2437278 Nitrosococcus halophilus Nc4 8917359 YP_003527839.1 CDS Nhal_2364 NC_013960.1 2437320 2438996 R TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: noc:Noc_2345 2-polyprenylphenol 6-hydroxylase; 2-polyprenylphenol 6-hydroxylase complement(2437320..2438996) Nitrosococcus halophilus Nc4 8917360 YP_003527840.1 CDS Nhal_2365 NC_013960.1 2438993 2439601 R PFAM: sterol-binding domain protein; KEGG: noc:Noc_2344 hypothetical protein; sterol-binding domain-containing protein complement(2438993..2439601) Nitrosococcus halophilus Nc4 8917361 YP_003527841.1 CDS Nhal_2366 NC_013960.1 2439699 2440445 R TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: noc:Noc_2343 ubiquinone/menaquinone biosynthesis methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase complement(2439699..2440445) Nitrosococcus halophilus Nc4 8917362 YP_003527842.1 CDS Nhal_2367 NC_013960.1 2440453 2440845 R PFAM: protein of unknown function DUF971; KEGG: noc:Noc_2342 hypothetical protein; hypothetical protein complement(2440453..2440845) Nitrosococcus halophilus Nc4 8917363 YP_003527843.1 CDS Nhal_2368 NC_013960.1 2440878 2442203 R KEGG: noc:Noc_2341 ATP-dependent protease ATP-binding subunit; TIGRFAM: heat shock protein HslVU, ATPase HslU; PFAM: ATPase AAA-2 domain protein; ATPase AAA; SMART: ATPase AAA; heat shock protein HslVU, ATPase HslU complement(2440878..2442203) Nitrosococcus halophilus Nc4 8917364 YP_003527844.1 CDS Nhal_2369 NC_013960.1 2442224 2442763 R PFAM: 20S proteasome A and subunit betas; KEGG: noc:Noc_2340 ATP-dependent protease peptidase subunit; 20S proteasome subunits A and B complement(2442224..2442763) Nitrosococcus halophilus Nc4 8917365 YP_003527845.1 CDS Nhal_2370 NC_013960.1 2442894 2443883 R TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; polysaccharide biosynthesis protein CapD; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: noc:Noc_2339 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase complement(2442894..2443883) Nitrosococcus halophilus Nc4 8917366 YP_003527846.1 CDS Nhal_2371 NC_013960.1 2444499 2445689 D TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: noc:Noc_2338 elongation factor Tu; translation elongation factor Tu 2444499..2445689 Nitrosococcus halophilus Nc4 8917370 YP_003527847.1 CDS Nhal_2372 NC_013960.1 2445950 2446288 D TIGRFAM: preprotein translocase subunit SecE; PFAM: protein secE/sec61-gamma protein; KEGG: noc:Noc_2337 SecE subunit of protein translocation complex; preprotein translocase subunit SecE 2445950..2446288 Nitrosococcus halophilus Nc4 8917372 YP_003527848.1 CDS Nhal_2373 NC_013960.1 2446298 2446831 D KEGG: noc:Noc_2336 transcription antitermination protein NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KOW domain protein; SMART: NGN domain protein; KOW domain protein; transcription termination/antitermination factor NusG 2446298..2446831 Nitrosococcus halophilus Nc4 8917373 YP_003527849.1 CDS Nhal_2374 NC_013960.1 2446916 2447347 D KEGG: noc:Noc_2335 ribosomal protein L11; TIGRFAM: ribosomal protein L11; PFAM: ribosomal protein L11; SMART: ribosomal protein L11; 50S ribosomal protein L11 2446916..2447347 Nitrosococcus halophilus Nc4 8917374 YP_003527850.1 CDS Nhal_2375 NC_013960.1 2447351 2448046 D TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1; KEGG: noc:Noc_2334 ribosomal protein L1; 50S ribosomal protein L1 2447351..2448046 Nitrosococcus halophilus Nc4 8917375 YP_003527851.1 CDS Nhal_2376 NC_013960.1 2448310 2448870 D PFAM: ribosomal protein L10; KEGG: noc:Noc_2333 50S ribosomal protein L10; 50S ribosomal protein L10 2448310..2448870 Nitrosococcus halophilus Nc4 8917376 YP_003527852.1 CDS Nhal_2377 NC_013960.1 2448940 2449323 D TIGRFAM: ribosomal protein L7/L12; PFAM: ribosomal protein L7/L12; KEGG: noc:Noc_2332 50S ribosomal protein L7/L12; 50S ribosomal protein L7/L12 2448940..2449323 Nitrosococcus halophilus Nc4 8917377 YP_003527853.1 CDS Nhal_2378 NC_013960.1 2449522 2453607 D KEGG: noc:Noc_2331 DNA-directed RNA polymerase, beta subunit; TIGRFAM: DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 3; RNA polymerase Rpb2 domain 2; RNA polymerase subunit beta; DNA-directed RNA polymerase subunit beta 2449522..2453607 Nitrosococcus halophilus Nc4 8917378 YP_003527854.1 CDS Nhal_2379 NC_013960.1 2453685 2457896 D KEGG: noc:Noc_2330 DNA-directed RNA polymerase subunit beta'; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 3; RNA polymerase subunit alpha; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein; DNA-directed RNA polymerase subunit beta' 2453685..2457896 Nitrosococcus halophilus Nc4 8917379 YP_003527855.1 CDS Nhal_2380 NC_013960.1 2458074 2458448 D TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; KEGG: noc:Noc_2329 30S ribosomal protein S12; 30S ribosomal protein S12 2458074..2458448 Nitrosococcus halophilus Nc4 8917380 YP_003527856.1 CDS Nhal_2381 NC_013960.1 2458503 2458973 D TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7; KEGG: noc:Noc_2328 30S ribosomal protein S7; 30S ribosomal protein S7 2458503..2458973 Nitrosococcus halophilus Nc4 8917381 YP_003527857.1 CDS Nhal_2382 NC_013960.1 2459020 2461113 D TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: noc:Noc_2327 elongation factor G; translation elongation factor G 2459020..2461113 Nitrosococcus halophilus Nc4 8917382 YP_003527858.1 CDS Nhal_2383 NC_013960.1 2461151 2462341 D TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: noc:Noc_2338 elongation factor Tu; translation elongation factor Tu 2461151..2462341 Nitrosococcus halophilus Nc4 8917383 YP_003527859.1 CDS Nhal_2384 NC_013960.1 2462346 2462660 D TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10; KEGG: noc:Noc_2325 30S ribosomal protein S10; 30S ribosomal protein S10 2462346..2462660 Nitrosococcus halophilus Nc4 8917384 YP_003527860.1 CDS Nhal_2385 NC_013960.1 2462696 2463346 D PFAM: ribosomal protein L3; KEGG: noc:Noc_2324 ribosomal protein L3; 50S ribosomal protein L3 2462696..2463346 Nitrosococcus halophilus Nc4 8917385 YP_003527861.1 CDS Nhal_2386 NC_013960.1 2463364 2463984 D PFAM: ribosomal protein L4/L1e; KEGG: noc:Noc_2323 ribosomal protein L4/L1e; 50S ribosomal protein L4/L1e 2463364..2463984 Nitrosococcus halophilus Nc4 8917386 YP_003527862.1 CDS Nhal_2387 NC_013960.1 2463981 2464277 D PFAM: ribosomal protein L25/L23; KEGG: noc:Noc_2322 ribosomal L23 protein; 50S ribosomal protein L25/L23 2463981..2464277 Nitrosococcus halophilus Nc4 8917387 YP_003527863.1 CDS Nhal_2388 NC_013960.1 2464315 2465136 D TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2; KEGG: noc:Noc_2321 50S ribosomal protein L2; 50S ribosomal protein L2 2464315..2465136 Nitrosococcus halophilus Nc4 8917388 YP_003527864.1 CDS Nhal_2389 NC_013960.1 2465158 2465430 D TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: noc:Noc_2320 ribosomal protein S19; 30S ribosomal protein S19 2465158..2465430 Nitrosococcus halophilus Nc4 8917389 YP_003527865.1 CDS Nhal_2390 NC_013960.1 2465442 2465774 D TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: noc:Noc_2319 ribosomal protein L22; 50S ribosomal protein L22 2465442..2465774 Nitrosococcus halophilus Nc4 8917390 YP_003527866.1 CDS Nhal_2391 NC_013960.1 2465787 2466458 D KEGG: noc:Noc_2318 30S ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; ribosomal protein S3 domain; SMART: KH domain protein; 30S ribosomal protein S3 2465787..2466458 Nitrosococcus halophilus Nc4 8917391 YP_003527867.1 CDS Nhal_2392 NC_013960.1 2466470 2466883 D TIGRFAM: ribosomal protein L16; PFAM: ribosomal protein L16; KEGG: noc:Noc_2317 50S ribosomal protein L16; 50S ribosomal protein L16 2466470..2466883 Nitrosococcus halophilus Nc4 8917392 YP_003527868.1 CDS Nhal_2393 NC_013960.1 2466883 2467077 D TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: noc:Noc_2316 ribosomal protein L29; 50S ribosomal protein L29 2466883..2467077 Nitrosococcus halophilus Nc4 8917393 YP_003527869.1 CDS Nhal_2394 NC_013960.1 2467080 2467340 D PFAM: ribosomal protein S17; KEGG: noc:Noc_2315 ribosomal protein S17; 30S ribosomal protein S17 2467080..2467340 Nitrosococcus halophilus Nc4 8917394 YP_003527870.1 CDS Nhal_2395 NC_013960.1 2467382 2467750 D TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: noc:Noc_2314 ribosomal protein L14; 50S ribosomal protein L14 2467382..2467750 Nitrosococcus halophilus Nc4 8917395 YP_003527871.1 CDS Nhal_2396 NC_013960.1 2467762 2468082 D TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; KEGG: noc:Noc_2313 ribosomal protein L24; 50S ribosomal protein L24 2467762..2468082 Nitrosococcus halophilus Nc4 8917396 YP_003527872.1 CDS Nhal_2397 NC_013960.1 2468140 2468679 D PFAM: ribosomal protein L5; KEGG: noc:Noc_2312 50S ribosomal protein L5; 50S ribosomal protein L5 2468140..2468679 Nitrosococcus halophilus Nc4 8917397 YP_003527873.1 CDS Nhal_2398 NC_013960.1 2468704 2469009 D PFAM: ribosomal protein S14; KEGG: noc:Noc_2311 ribosomal protein S14; 30S ribosomal protein S14 2468704..2469009 Nitrosococcus halophilus Nc4 8917398 YP_003527874.1 CDS Nhal_2399 NC_013960.1 2469052 2469444 D PFAM: ribosomal protein S8; KEGG: noc:Noc_2310 ribosomal protein S8; 30S ribosomal protein S8 2469052..2469444 Nitrosococcus halophilus Nc4 8917399 YP_003527875.1 CDS Nhal_2400 NC_013960.1 2469459 2469992 D PFAM: ribosomal protein L6; KEGG: noc:Noc_2309 ribosomal protein L6; 50S ribosomal protein L6 2469459..2469992 Nitrosococcus halophilus Nc4 8917400 YP_003527876.1 CDS Nhal_2401 NC_013960.1 2470014 2470367 D TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: noc:Noc_2308 ribosomal protein L18; 50S ribosomal protein L18 2470014..2470367 Nitrosococcus halophilus Nc4 8917401 YP_003527877.1 CDS Nhal_2402 NC_013960.1 2470380 2470889 D TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 ; ribosomal protein S5 domain protein; KEGG: noc:Noc_2307 30S ribosomal protein S5; 30S ribosomal protein S5 2470380..2470889 Nitrosococcus halophilus Nc4 8917402 YP_003527878.1 CDS Nhal_2403 NC_013960.1 2470889 2471080 D TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; KEGG: tcx:Tcr_0313 ribosomal protein L30; 50S ribosomal protein L30 2470889..2471080 Nitrosococcus halophilus Nc4 8917403 YP_003527879.1 CDS Nhal_2404 NC_013960.1 2471082 2471516 D TIGRFAM: ribosomal protein L15; PFAM: ribosomal protein L15; KEGG: noc:Noc_2306 ribosomal protein L15; 50S ribosomal protein L15 2471082..2471516 Nitrosococcus halophilus Nc4 8917404 YP_003527880.1 CDS Nhal_2405 NC_013960.1 2471519 2472880 D TIGRFAM: preprotein translocase subunit SecY; PFAM: SecY protein; KEGG: noc:Noc_2305 preprotein translocase subunit SecY; preprotein translocase subunit SecY 2471519..2472880 Nitrosococcus halophilus Nc4 8917405 YP_003527881.1 CDS Nhal_2406 NC_013960.1 2472906 2473019 D TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: noc:Noc_2304 ribosomal protein L36; 50S ribosomal protein L36 2472906..2473019 Nitrosococcus halophilus Nc4 8917406 YP_003527882.1 CDS Nhal_2407 NC_013960.1 2473123 2473479 D PFAM: ribosomal protein S13; KEGG: noc:Noc_2303 30S ribosomal protein S13; 30S ribosomal protein S13 2473123..2473479 Nitrosococcus halophilus Nc4 8917407 YP_003527883.1 CDS Nhal_2408 NC_013960.1 2473502 2473885 D PFAM: ribosomal protein S11; KEGG: noc:Noc_2302 30S ribosomal protein S11; 30S ribosomal protein S11 2473502..2473885 Nitrosococcus halophilus Nc4 8917408 YP_003527884.1 CDS Nhal_2409 NC_013960.1 2473901 2474527 D KEGG: noc:Noc_2301 ribosomal protein S4; TIGRFAM: ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; 30S ribosomal protein S4 2473901..2474527 Nitrosococcus halophilus Nc4 8917409 YP_003527885.1 CDS Nhal_2410 NC_013960.1 2474620 2475618 D KEGG: noc:Noc_2300 DNA-directed RNA polymerase subunit alpha; TIGRFAM: DNA-directed RNA polymerase, subunit alpha; PFAM: RNA polymerase insert; RNA polymerase subunit alpha domain protein; RNA polymerase dimerisation; SMART: RNA polymerase RpoA/D/Rpb3-type; DNA-directed RNA polymerase subunit alpha 2474620..2475618 Nitrosococcus halophilus Nc4 8917410 YP_003527886.1 CDS Nhal_2411 NC_013960.1 2475655 2476035 D TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: noc:Noc_2299 ribosomal protein L17; 50S ribosomal protein L17 2475655..2476035 Nitrosococcus halophilus Nc4 8917411 YP_003527887.1 CDS Nhal_2412 NC_013960.1 2476233 2476976 D PFAM: protein of unknown function DUF62; KEGG: noc:Noc_2298 hypothetical protein; hypothetical protein 2476233..2476976 Nitrosococcus halophilus Nc4 8917412 YP_003527888.1 CDS Nhal_2413 NC_013960.1 2476999 2477709 R KEGG: noc:Noc_2296 3-demethylubiquinone-9 3-methyltransferase; TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: methyltransferase type 11; NodS family protein; methyltransferase small; UbiE/COQ5 methyltransferase; methyltransferase type 12; ubiquinone biosynthesis O-methyltransferase complement(2476999..2477709) Nitrosococcus halophilus Nc4 8917413 YP_003527889.1 CDS Nhal_2414 NC_013960.1 2477706 2479034 R PFAM: amidohydrolase; amidohydrolase; KEGG: noc:Noc_2295 N-ethylammeline chlorohydrolase; amidohydrolase complement(2477706..2479034) Nitrosococcus halophilus Nc4 8917414 YP_003527890.1 CDS Nhal_2415 NC_013960.1 2479095 2479580 D KEGG: noc:Noc_2294 hypothetical protein; hypothetical protein 2479095..2479580 Nitrosococcus halophilus Nc4 8917415 YP_003527891.1 CDS Nhal_2416 NC_013960.1 2479654 2480703 D KEGG: noc:Noc_2293 initiation factor 2B alpha/beta/delta; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related; translation initiation factor, aIF-2BI family 2479654..2480703 Nitrosococcus halophilus Nc4 8917416 YP_003527892.1 CDS Nhal_2417 NC_013960.1 2480700 2481620 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: noc:Noc_2292 transcriptional regulator CysB-like protein; LysR family transcriptional regulator complement(2480700..2481620) Nitrosococcus halophilus Nc4 8917417 YP_003527893.1 CDS Nhal_2418 NC_013960.1 2481754 2482554 D PFAM: protein of unknown function DUF81; KEGG: noc:Noc_2291 hypothetical protein; hypothetical protein 2481754..2482554 Nitrosococcus halophilus Nc4 8917418 YP_003527894.1 CDS Nhal_2419 NC_013960.1 2482570 2483283 D KEGG: noc:Noc_2290 phosphoadenosine phosphosulfate reductase; TIGRFAM: adenylylsulfate reductase, thioredoxin dependent; phosphoadenosine phosphosulfate reductase; PFAM: phosphoadenosine phosphosulfate reductase; adenylylsulfate reductase, thioredoxin dependent 2482570..2483283 Nitrosococcus halophilus Nc4 8917419 YP_003527895.1 CDS Nhal_2420 NC_013960.1 2483350 2484255 D TIGRFAM: sulfate adenylyltransferase, small subunit; PFAM: phosphoadenosine phosphosulfate reductase; KEGG: noc:Noc_2289 sulfate adenylyltransferase subunit 2; sulfate adenylyltransferase, small subunit 2483350..2484255 Nitrosococcus halophilus Nc4 8917420 YP_003527896.1 CDS Nhal_2421 NC_013960.1 2484269 2485543 D KEGG: noc:Noc_2288 sulfate adenylyltransferase, large subunit; TIGRFAM: sulfate adenylyltransferase, large subunit; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; sulfate adenylyltransferase, large subunit 2484269..2485543 Nitrosococcus halophilus Nc4 8917421 YP_003527897.1 CDS Nhal_2422 NC_013960.1 2485587 2486594 R KEGG: noc:Noc_2287 hypothetical protein; hypothetical protein complement(2485587..2486594) Nitrosococcus halophilus Nc4 8917422 YP_003527898.1 CDS Nhal_2423 NC_013960.1 2486630 2488075 R KEGG: noc:Noc_2286 hypothetical protein; hypothetical protein complement(2486630..2488075) Nitrosococcus halophilus Nc4 8917423 YP_003527899.1 CDS Nhal_2424 NC_013960.1 2488278 2488655 D TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: noc:Noc_2285 camphor resistance CrcB protein; CrcB protein 2488278..2488655 Nitrosococcus halophilus Nc4 8917424 YP_003527900.1 CDS Nhal_2425 NC_013960.1 2488668 2489009 D PFAM: protein of unknown function DUF190; KEGG: noc:Noc_2284 hypothetical protein; hypothetical protein 2488668..2489009 Nitrosococcus halophilus Nc4 8917425 YP_003527901.1 CDS Nhal_2426 NC_013960.1 2489202 2491088 D KEGG: noc:Noc_2283 DNA topoisomerase IV subunit B; TIGRFAM: DNA topoisomerase IV subunit beta; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; DNA topoisomerase IV subunit beta 2489202..2491088 Nitrosococcus halophilus Nc4 8917426 YP_003527902.1 CDS Nhal_2427 NC_013960.1 2491097 2493328 D KEGG: noc:Noc_2282 DNA topoisomerase IV subunit A; TIGRFAM: DNA topoisomerase IV, subunit alpha; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A; DNA topoisomerase IV subunit alpha 2491097..2493328 Nitrosococcus halophilus Nc4 8917427 YP_003527903.1 CDS Nhal_2428 NC_013960.1 2493362 2495260 D PFAM: polysaccharide biosynthesis protein CapD; Male sterility domain; KR domain protein; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: noc:Noc_2281 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein CapD 2493362..2495260 Nitrosococcus halophilus Nc4 8917428 YP_003527904.1 CDS Nhal_2429 NC_013960.1 2495257 2496144 D TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: nucleotidyl transferase; KEGG: noc:Noc_2280 UTP--glucose-1-phosphate uridylyltransferase; UTP-glucose-1-phosphate uridylyltransferase 2495257..2496144 Nitrosococcus halophilus Nc4 8917429 YP_003527905.1 CDS Nhal_2430 NC_013960.1 2496239 2497933 D PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: mca:MCA2577 dehydrogenase subunit; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit 2496239..2497933 Nitrosococcus halophilus Nc4 8917430 YP_003527906.1 CDS Nhal_2431 NC_013960.1 2497933 2500743 D TIGRFAM: formate dehydrogenase, subunit alpha; PFAM: molybdopterin oxidoreductase; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: reh:H16_B1700 tungsten-containing formate dehydrogenase subunit alpha; formate dehydrogenase subunit alpha 2497933..2500743 Nitrosococcus halophilus Nc4 8917431 YP_003527907.1 CDS Nhal_2432 NC_013960.1 2501017 2501772 D KEGG: noc:Noc_0789 acid phosphatase; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; stationary-phase survival protein SurE 2501017..2501772 Nitrosococcus halophilus Nc4 8917432 YP_003527908.1 CDS Nhal_2433 NC_013960.1 2501769 2502428 D KEGG: noc:Noc_0790 protein-L-isoaspartate(D-aspartate) O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 2501769..2502428 Nitrosococcus halophilus Nc4 8917433 YP_003527909.1 CDS Nhal_2434 NC_013960.1 2502428 2503006 D PFAM: SNARE associated Golgi protein; KEGG: noc:Noc_0791 hypothetical protein; hypothetical protein 2502428..2503006 Nitrosococcus halophilus Nc4 8917434 YP_003527910.1 CDS Nhal_2435 NC_013960.1 2503166 2503882 D PFAM: peptidase M23; peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: noc:Noc_0792 peptidase M23B; peptidase M23 2503166..2503882 Nitrosococcus halophilus Nc4 8917435 YP_003527911.1 CDS Nhal_2436 NC_013960.1 2504024 2505122 D hypothetical protein join(2504024..2504098,2504100..2505122) Nitrosococcus halophilus Nc4 8917436 YP_003527912.1 CDS Nhal_2437 NC_013960.1 2505198 2506700 D TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: tgr:Tgr7_1462 lysyl-tRNA synthetase; lysyl-tRNA synthetase 2505198..2506700 Nitrosococcus halophilus Nc4 8917437 YP_003527913.1 CDS Nhal_2438 NC_013960.1 2506708 2507457 D TIGRFAM: DNA repair protein RecO; PFAM: recombination protein O RecO; KEGG: noc:Noc_0794 recombination protein O, RecO; DNA repair protein RecO 2506708..2507457 Nitrosococcus halophilus Nc4 8917438 YP_003527914.1 CDS Nhal_2439 NC_013960.1 2507444 2508184 D KEGG: noc:Noc_0795 pyridoxal phosphate biosynthetic protein PdxJ; TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ; PFAM: pyridoxal phosphate biosynthetic protein PdxJ; pyridoxal phosphate biosynthetic protein PdxJ 2507444..2508184 Nitrosococcus halophilus Nc4 8917439 YP_003527915.1 CDS Nhal_2440 NC_013960.1 2508181 2508600 D TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: noc:Noc_0796 holo-acyl carrier protein synthase; holo-ACP synthase 2508181..2508600 Nitrosococcus halophilus Nc4 8917440 YP_003527916.1 CDS Nhal_2441 NC_013960.1 2508717 2509616 D TIGRFAM: cysteine synthase B; cysteine synthase; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; KEGG: noc:Noc_0797 cysteine synthase B; cysteine synthase B 2508717..2509616 Nitrosococcus halophilus Nc4 8917441 YP_003527917.1 CDS Nhal_2442 NC_013960.1 2509741 2511750 D KEGG: noc:Noc_0798 hypothetical protein; hypothetical protein 2509741..2511750 Nitrosococcus halophilus Nc4 8917442 YP_003527918.1 CDS Nhal_2443 NC_013960.1 2511758 2512366 D KEGG: noc:Noc_0799 hypothetical protein; hypothetical protein 2511758..2512366 Nitrosococcus halophilus Nc4 8917443 YP_003527919.1 CDS Nhal_2444 NC_013960.1 2512378 2513145 D KEGG: noc:Noc_0800 hypothetical protein; hypothetical protein 2512378..2513145 Nitrosococcus halophilus Nc4 8917444 YP_003527920.1 CDS Nhal_2445 NC_013960.1 2513225 2514565 D TIGRFAM: RNA methyltransferase, TrmA family; PFAM: (uracil-5)-methyltransferase; KEGG: noc:Noc_0801 23S rRNA methyltransferase/RumA; TrmA family RNA methyltransferase 2513225..2514565 Nitrosococcus halophilus Nc4 8917445 YP_003527921.1 CDS Nhal_2446 NC_013960.1 2514716 2515213 D KEGG: noc:Noc_0802 riboflavin synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase; 6,7-dimethyl-8-ribityllumazine synthase 2514716..2515213 Nitrosococcus halophilus Nc4 8917446 YP_003527922.1 CDS Nhal_2447 NC_013960.1 2515210 2515662 D TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: noc:Noc_0803 NusB antitermination factor; transcription antitermination factor NusB 2515210..2515662 Nitrosococcus halophilus Nc4 8917447 YP_003527923.1 CDS Nhal_2448 NC_013960.1 2515711 2516670 D KEGG: noc:Noc_0804 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; thiamine-monophosphate kinase 2515711..2516670 Nitrosococcus halophilus Nc4 8917448 YP_003527924.1 CDS Nhal_2449 NC_013960.1 2516673 2517164 D PFAM: phosphatidylglycerophosphatase A; KEGG: noc:Noc_0805 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase 2516673..2517164 Nitrosococcus halophilus Nc4 8917449 YP_003527925.1 CDS Nhal_2450 NC_013960.1 2517296 2519983 R KEGG: noc:Noc_0806 protein-P-II uridylyltransferase; TIGRFAM: protein-P-II uridylyltransferase; PFAM: GlnD PII-uridylyltransferase; metal-dependent phosphohydrolase HD sub domain; DNA polymerase beta domain protein region; amino acid-binding ACT domain protein; SMART: metal-dependent phosphohydrolase HD region; protein-P-II uridylyltransferase complement(2517296..2519983) Nitrosococcus halophilus Nc4 8917450 YP_003527926.1 CDS Nhal_2451 NC_013960.1 2520007 2520774 R TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: noc:Noc_0807 peptidase M24A; methionine aminopeptidase, type I complement(2520007..2520774) Nitrosococcus halophilus Nc4 8917451 YP_003527927.1 CDS Nhal_2452 NC_013960.1 2521007 2521816 D TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: noc:Noc_0808 ribosomal protein S2; 30S ribosomal protein S2 2521007..2521816 Nitrosococcus halophilus Nc4 8917452 YP_003527928.1 CDS Nhal_2453 NC_013960.1 2521926 2522810 D TIGRFAM: translation elongation factor Ts; PFAM: translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; KEGG: noc:Noc_0809 elongation factor Ts; translation elongation factor Ts 2521926..2522810 Nitrosococcus halophilus Nc4 8917453 YP_003527929.1 CDS Nhal_2454 NC_013960.1 2522815 2523546 D KEGG: noc:Noc_0810 uridylate kinase; TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; uridylate kinase 2522815..2523546 Nitrosococcus halophilus Nc4 8917454 YP_003527930.1 CDS Nhal_2455 NC_013960.1 2523552 2524109 D TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; KEGG: noc:Noc_0811 ribosome recycling factor; ribosome recycling factor 2523552..2524109 Nitrosococcus halophilus Nc4 8917455 YP_003527931.1 CDS Nhal_2456 NC_013960.1 2524157 2524915 D KEGG: noc:Noc_0812 di-trans-poly-cis-decaprenylcistransferase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; UDP diphosphate synthase 2524157..2524915 Nitrosococcus halophilus Nc4 8917456 YP_003527932.1 CDS Nhal_2457 NC_013960.1 2524908 2525729 D PFAM: phosphatidate cytidylyltransferase; KEGG: noc:Noc_0813 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 2524908..2525729 Nitrosococcus halophilus Nc4 8917457 YP_003527933.1 CDS Nhal_2458 NC_013960.1 2525726 2526922 D KEGG: noc:Noc_0814 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2525726..2526922 Nitrosococcus halophilus Nc4 8917458 YP_003527934.1 CDS Nhal_2459 NC_013960.1 2526907 2528265 D KEGG: noc:Noc_0815 peptidase M50, membrane-associated zinc metallopeptidase; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; membrane-associated zinc protein metalloprotease 2526907..2528265 Nitrosococcus halophilus Nc4 8917459 YP_003527935.1 CDS Nhal_2460 NC_013960.1 2528623 2530929 D TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); polypeptide-transport-associated domain protein FtsQ-type; surface antigen variable number repeat protein; KEGG: noc:Noc_0816 outer membrane protein; outer membrane protein assembly complex, YaeT protein 2528623..2530929 Nitrosococcus halophilus Nc4 8917460 YP_003527936.1 CDS Nhal_2461 NC_013960.1 2531051 2531587 D PFAM: outer membrane chaperone Skp (OmpH); KEGG: noc:Noc_0817 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp 2531051..2531587 Nitrosococcus halophilus Nc4 8917461 YP_003527937.1 CDS Nhal_2462 NC_013960.1 2532017 2532466 D TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: noc:Noc_0818 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; 3-hydroxyacyl-ACP dehydratase 2532017..2532466 Nitrosococcus halophilus Nc4 8917462 YP_003527938.1 CDS Nhal_2463 NC_013960.1 2532463 2533233 D TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: noc:Noc_0819 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase; acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase 2532463..2533233 Nitrosococcus halophilus Nc4 8917463 YP_003527939.1 CDS Nhal_2464 NC_013960.1 2533265 2533903 D PFAM: hypothetical protein; KEGG: noc:Noc_0820 hypothetical protein; hypothetical protein 2533265..2533903 Nitrosococcus halophilus Nc4 8917464 YP_003527940.1 CDS Nhal_2465 NC_013960.1 2533903 2535123 D KEGG: noc:Noc_0821 pyrrolo-quinoline quinone; TIGRFAM: outer membrane assembly lipoprotein YfgL; PFAM: pyrrolo-quinoline quinone; SMART: pyrrolo-quinoline quinone; outer membrane assembly lipoprotein YfgL 2533903..2535123 Nitrosococcus halophilus Nc4 8917465 YP_003527941.1 CDS Nhal_2466 NC_013960.1 2535286 2535831 D PFAM: transposase IS605 OrfB; KEGG: noc:Noc_1587 transposase; transposase IS605 OrfB 2535286..2535831 Nitrosococcus halophilus Nc4 8917466 YP_003527942.1 CDS Nhal_2467 NC_013960.1 2535943 2537337 D TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: noc:Noc_0822 small GTP-binding protein domain-containing protein; small GTP-binding protein 2535943..2537337 Nitrosococcus halophilus Nc4 8917467 YP_003527943.1 CDS Nhal_2468 NC_013960.1 2537358 2538626 R TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: aeh:Mlg_1278 molybdopterin molybdochelatase; molybdenum cofactor synthesis protein complement(2537358..2538626) Nitrosococcus halophilus Nc4 8917468 YP_003527944.1 CDS Nhal_2469 NC_013960.1 2538631 2539263 R TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: sse:Ssed_0121 molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein A complement(2538631..2539263) Nitrosococcus halophilus Nc4 8917469 YP_003527945.1 CDS Nhal_2473 NC_013960.1 2540642 2541181 D PFAM: ferritin; rubrerythrin; KEGG: reh:H16_A2248 bacterioferritin (cytochrome b1); ferritin 2540642..2541181 Nitrosococcus halophilus Nc4 8917473 YP_003527946.1 CDS Nhal_2474 NC_013960.1 2541318 2542418 R TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: noc:Noc_1457 YVTN beta-propeller repeat-containing protein; 40-residue YVTN family beta-propeller repeat-containing protein complement(2541318..2542418) Nitrosococcus halophilus Nc4 8917474 YP_003527947.1 CDS Nhal_2475 NC_013960.1 2542635 2542883 R SMART: CBS domain containing protein; CBS domain-containing protein complement(2542635..2542883) Nitrosococcus halophilus Nc4 8917475 YP_003527948.1 CDS Nhal_2476 NC_013960.1 2543114 2543845 D PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: noc:Noc_0823 OmpA/MotB; OmpA/MotB domain-containing protein 2543114..2543845 Nitrosococcus halophilus Nc4 8917476 YP_003527949.1 CDS Nhal_2477 NC_013960.1 2543870 2544259 R PFAM: thioesterase superfamily protein; KEGG: noc:Noc_0824 thioesterase superfamily protein; thioesterase superfamily protein complement(2543870..2544259) Nitrosococcus halophilus Nc4 8917477 YP_003527950.1 CDS Nhal_2478 NC_013960.1 2544264 2546066 R PFAM: AMP-dependent synthetase and ligase; KEGG: noc:Noc_0825 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(2544264..2546066) Nitrosococcus halophilus Nc4 8917478 YP_003527951.1 CDS Nhal_2479 NC_013960.1 2546070 2548088 R PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: noc:Noc_0826 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein complement(2546070..2548088) Nitrosococcus halophilus Nc4 8917479 YP_003527952.1 CDS Nhal_2480 NC_013960.1 2548093 2549397 R KEGG: noc:Noc_0827 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase; acetyl-CoA acetyltransferase complement(2548093..2549397) Nitrosococcus halophilus Nc4 8917480 YP_003527953.1 CDS Nhal_2481 NC_013960.1 2549525 2550445 R KEGG: hch:HCH_02753 hypothetical protein; hypothetical protein complement(2549525..2550445) Nitrosococcus halophilus Nc4 8917481 YP_003527954.1 CDS Nhal_2482 NC_013960.1 2551320 2552168 D PFAM: glutamine cyclotransferase; KEGG: noc:Noc_0828 glutamine cyclotransferase; glutamine cyclotransferase 2551320..2552168 Nitrosococcus halophilus Nc4 8917482 YP_003527955.1 CDS Nhal_2483 NC_013960.1 2552174 2554972 R PFAM: phosphoenolpyruvate carboxylase; KEGG: tgr:Tgr7_0875 phosphoenolpyruvate carboxylase; phosphoenolpyruvate carboxylase complement(2552174..2554972) Nitrosococcus halophilus Nc4 8917483 YP_003527956.1 CDS Nhal_2484 NC_013960.1 2555137 2555946 D KEGG: pla:Plav_2978 Ku domain-containing protein; TIGRFAM: Ku protein; PFAM: Ku domain protein; SMART: Ku domain protein; Ku protein 2555137..2555946 Nitrosococcus halophilus Nc4 8917484 YP_003527957.1 CDS Nhal_2485 NC_013960.1 2555981 2556553 D KEGG: tgr:Tgr7_1932 exonuclease; exonuclease 2555981..2556553 Nitrosococcus halophilus Nc4 8917485 YP_003527958.1 CDS Nhal_2486 NC_013960.1 2556640 2558805 D KEGG: mxa:MXAN_5012 group II decarboxylase family protein; group II decarboxylase family protein 2556640..2558805 Nitrosococcus halophilus Nc4 8917486 YP_003527959.1 CDS Nhal_2487 NC_013960.1 2558848 2559276 D KEGG: dal:Dalk_5270 hypothetical protein; hypothetical protein 2558848..2559276 Nitrosococcus halophilus Nc4 8917487 YP_003527960.1 CDS Nhal_2488 NC_013960.1 2559538 2560011 D KEGG: sfu:Sfum_4006 hypothetical protein; hypothetical protein 2559538..2560011 Nitrosococcus halophilus Nc4 8917488 YP_003527961.1 CDS Nhal_2489 NC_013960.1 2560592 2562541 D KEGG: sfu:Sfum_3451 glycogen branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase all-beta; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; 1,4-alpha-glucan branching protein 2560592..2562541 Nitrosococcus halophilus Nc4 8917489 YP_003527962.1 CDS Nhal_2490 NC_013960.1 2562640 2564628 D PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: noc:Noc_0829 alpha amylase, catalytic region; alpha amylase catalytic subunit 2562640..2564628 Nitrosococcus halophilus Nc4 8917490 YP_003527963.1 CDS Nhal_2491 NC_013960.1 2564642 2567974 D KEGG: noc:Noc_0830 alpha amylase, catalytic region; TIGRFAM: trehalose synthase; trehalose synthase-fused maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; trehalose synthase 2564642..2567974 Nitrosococcus halophilus Nc4 8917491 YP_003527964.1 CDS Nhal_2492 NC_013960.1 2568157 2568552 R PFAM: cupin; KEGG: noc:Noc_0831 hypothetical protein; cupin complement(2568157..2568552) Nitrosococcus halophilus Nc4 8917492 YP_003527965.1 CDS Nhal_2493 NC_013960.1 2568640 2569221 D TIGRFAM: intracellular protease PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: pag:PLES_47141 amidase/protease; intracellular protease PfpI family 2568640..2569221 Nitrosococcus halophilus Nc4 8917493 YP_003527966.1 CDS Nhal_2494 NC_013960.1 2569283 2569534 R KEGG: noc:Noc_0832 hypothetical protein; hypothetical protein complement(2569283..2569534) Nitrosococcus halophilus Nc4 8917494 YP_003527967.1 CDS Nhal_2495 NC_013960.1 2569699 2569800 R hypothetical protein complement(2569699..2569800) Nitrosococcus halophilus Nc4 8917495 YP_003527968.1 CDS Nhal_2496 NC_013960.1 2569888 2570025 R hypothetical protein complement(2569888..2570025) Nitrosococcus halophilus Nc4 8917496 YP_003527969.1 CDS Nhal_2497 NC_013960.1 2570560 2573973 R PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; ArgK protein; KEGG: noc:Noc_1893 methylmalonyl-CoA mutase-like; methylmalonyl-CoA mutase complement(2570560..2573973) Nitrosococcus halophilus Nc4 8917497 YP_003527970.1 CDS Nhal_2498 NC_013960.1 2574232 2575407 D KEGG: noc:Noc_1891 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase; acetyl-CoA acetyltransferase 2574232..2575407 Nitrosococcus halophilus Nc4 8917498 YP_003527971.1 CDS Nhal_2499 NC_013960.1 2575450 2577057 D PFAM: carboxyl transferase; KEGG: noc:Noc_1890 propionyl-CoA carboxylase; methylcrotonoyl-CoA carboxylase 2575450..2577057 Nitrosococcus halophilus Nc4 8917499 YP_003527972.1 CDS Nhal_2500 NC_013960.1 2577067 2577849 D PFAM: enoyl-CoA hydratase/isomerase; KEGG: noc:Noc_1889 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 2577067..2577849 Nitrosococcus halophilus Nc4 8917500 YP_003527973.1 CDS Nhal_2501 NC_013960.1 2577979 2579031 D PFAM: pyruvate carboxyltransferase; KEGG: noc:Noc_1888 pyruvate carboxyltransferase; pyruvate carboxyltransferase 2577979..2579031 Nitrosococcus halophilus Nc4 8917501 YP_003527974.1 CDS Nhal_2502 NC_013960.1 2579181 2580323 D TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: pin:Ping_3063 transposase, IS605 OrfB family protein; transposase, IS605 OrfB family 2579181..2580323 Nitrosococcus halophilus Nc4 8917502 YP_003527975.1 CDS Nhal_2503 NC_013960.1 2580331 2580507 D hypothetical protein 2580331..2580507 Nitrosococcus halophilus Nc4 8917503 YP_003527976.1 CDS Nhal_2504 NC_013960.1 2580629 2580856 D PFAM: protein of unknown function UPF0150; hypothetical protein 2580629..2580856 Nitrosococcus halophilus Nc4 8917504 YP_003527977.1 CDS Nhal_2505 NC_013960.1 2580856 2581047 D hypothetical protein 2580856..2581047 Nitrosococcus halophilus Nc4 8917505 YP_003527978.1 CDS Nhal_2506 NC_013960.1 2581241 2581711 D KEGG: noc:Noc_2202 hypothetical protein; hypothetical protein 2581241..2581711 Nitrosococcus halophilus Nc4 8917506 YP_003527979.1 CDS Nhal_2507 NC_013960.1 2581919 2583808 D KEGG: noc:Noc_2201 hypothetical protein; hypothetical protein 2581919..2583808 Nitrosococcus halophilus Nc4 8917507 YP_003527980.1 CDS Nhal_2508 NC_013960.1 2583795 2584700 D KEGG: noc:Noc_2200 lipoprotein; lipoprotein 2583795..2584700 Nitrosococcus halophilus Nc4 8917508 YP_003527981.1 CDS Nhal_2509 NC_013960.1 2584918 2586873 D TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; KEGG: noc:Noc_2047 acetoacetyl-CoA synthetase; acetoacetyl-CoA synthase 2584918..2586873 Nitrosococcus halophilus Nc4 8917509 YP_003527982.1 CDS Nhal_2510 NC_013960.1 2586892 2587893 D TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: noc:Noc_2046 zinc-containing alcohol dehydrogenase superfamily protein; quinone oxidoreductase, YhdH/YhfP family 2586892..2587893 Nitrosococcus halophilus Nc4 8917510 YP_003527983.1 CDS Nhal_2511 NC_013960.1 2587883 2588056 D KEGG: noc:Noc_0433 hypothetical protein; hypothetical protein 2587883..2588056 Nitrosococcus halophilus Nc4 8917511 YP_003527984.1 CDS Nhal_2512 NC_013960.1 2588471 2588845 D PFAM: HNH endonuclease; KEGG: noc:Noc_1298 hypothetical protein; HNH endonuclease 2588471..2588845 Nitrosococcus halophilus Nc4 8917512 YP_003527985.1 CDS Nhal_2513 NC_013960.1 2588988 2589518 R PFAM: SEC-C motif domain protein; KEGG: noc:Noc_1299 sec-C domain-containing protein; SEC-C motif domain-containing protein complement(2588988..2589518) Nitrosococcus halophilus Nc4 8917513 YP_003527986.1 CDS Nhal_2514 NC_013960.1 2589749 2592064 D KEGG: hha:Hhal_0142 hypothetical protein; hypothetical protein 2589749..2592064 Nitrosococcus halophilus Nc4 8917514 YP_003527987.1 CDS Nhal_2515 NC_013960.1 2592061 2592369 D PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: hha:Hhal_0143 heat shock protein DnaJ domain-containing protein; heat shock protein DnaJ domain-containing protein 2592061..2592369 Nitrosococcus halophilus Nc4 8917515 YP_003527988.1 CDS Nhal_2516 NC_013960.1 2592389 2593033 D PFAM: GrpE protein; KEGG: hha:Hhal_0144 GrpE protein; GrpE protein 2592389..2593033 Nitrosococcus halophilus Nc4 8917516 YP_003527989.1 CDS Nhal_2517 NC_013960.1 2593030 2594805 D PFAM: heat shock protein 70; KEGG: hha:Hhal_0145 heat shock protein 70; heat shock protein 70 2593030..2594805 Nitrosococcus halophilus Nc4 8917517 YP_003527990.1 CDS Nhal_2518 NC_013960.1 2594805 2595053 D KEGG: hha:Hhal_0146 hypothetical protein; hypothetical protein 2594805..2595053 Nitrosococcus halophilus Nc4 8917518 YP_003527991.1 CDS Nhal_2519 NC_013960.1 2595298 2595519 R KEGG: gbm:Gbem_3668 HicB family protein; HicB family protein complement(2595298..2595519) Nitrosococcus halophilus Nc4 8917519 YP_003527992.1 CDS Nhal_2520 NC_013960.1 2595516 2595719 R PFAM: YcfA family protein; KEGG: noc:Noc_0412 hypothetical protein; YcfA family protein complement(2595516..2595719) Nitrosococcus halophilus Nc4 8917520 YP_003527993.1 CDS Nhal_2521 NC_013960.1 2595884 2596066 R TIGRFAM: addiction module antidote protein, HigA family; KEGG: noc:Noc_0437 plasmid maintenance system antidote protein; HigA family addiction module antidote protein complement(2595884..2596066) Nitrosococcus halophilus Nc4 8917521 YP_003527994.1 CDS Nhal_2523 NC_013960.1 2596168 2596473 R KEGG: bpa:BPP2999 DNA-binding protein; DNA-binding protein complement(2596168..2596473) Nitrosococcus halophilus Nc4 8917523 YP_003527995.1 CDS Nhal_2525 NC_013960.1 2598459 2598707 R hypothetical protein complement(2598459..2598707) Nitrosococcus halophilus Nc4 8917525 YP_003527996.1 CDS Nhal_2526 NC_013960.1 2598715 2598885 R KEGG: afe:Lferr_0673 hypothetical protein; hypothetical protein complement(2598715..2598885) Nitrosococcus halophilus Nc4 8917526 YP_003527997.1 CDS Nhal_2527 NC_013960.1 2598882 2599508 R KEGG: tgr:Tgr7_1724 CopG family protein; hypothetical protein complement(2598882..2599508) Nitrosococcus halophilus Nc4 8917527 YP_003527998.1 CDS Nhal_2530 NC_013960.1 2600725 2600949 D PFAM: CopG domain protein DNA-binding domain protein; KEGG: gme:Gmet_A3570 CopG-like DNA-binding protein; CopG domain-containing protein DNA-binding domain-containing protein 2600725..2600949 Nitrosococcus halophilus Nc4 8917530 YP_003527999.1 CDS Nhal_2531 NC_013960.1 2600933 2601205 D TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: gme:Gmet_A3569 addiction module toxin, RelE/StbE; RelE/StbE family addiction module toxin 2600933..2601205 Nitrosococcus halophilus Nc4 8917531 YP_003528000.1 CDS Nhal_2533 NC_013960.1 2602147 2602287 D hypothetical protein 2602147..2602287 Nitrosococcus halophilus Nc4 8917533 YP_003528001.1 CDS Nhal_2534 NC_013960.1 2602381 2603052 R KEGG: mca:MCA1904 lipoprotein; hypothetical protein complement(2602381..2603052) Nitrosococcus halophilus Nc4 8917534 YP_003528002.1 CDS Nhal_2535 NC_013960.1 2603191 2603976 R hypothetical protein complement(2603191..2603976) Nitrosococcus halophilus Nc4 8917535 YP_003528003.1 CDS Nhal_2536 NC_013960.1 2604035 2604361 R hypothetical protein complement(2604035..2604361) Nitrosococcus halophilus Nc4 8917536 YP_003528004.1 CDS Nhal_2537 NC_013960.1 2605018 2606439 R PFAM: PhoH family protein; SMART: nucleotide binding protein PINc; KEGG: noc:Noc_1210 PhoH-like protein; PhoH family protein complement(2605018..2606439) Nitrosococcus halophilus Nc4 8917537 YP_003528005.1 CDS Nhal_2538 NC_013960.1 2606668 2610363 D TIGRFAM: methionine synthase; PFAM: homocysteine S-methyltransferase; methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; dihydropteroate synthase DHPS; Vitamin B12 dependent methionine synthase activation region; KEGG: noc:Noc_1206 B12-dependent methionine synthase; methionine synthase 2606668..2610363 Nitrosococcus halophilus Nc4 8917538 YP_003528006.1 CDS Nhal_2539 NC_013960.1 2610547 2611815 D TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: noc:Noc_1378 isocitrate dehydrogenase NADP-dependent; isocitrate dehydrogenase, NADP-dependent 2610547..2611815 Nitrosococcus halophilus Nc4 8917539 YP_003528007.1 CDS Nhal_2540 NC_013960.1 2611883 2613070 D PFAM: methyltransferase type 12; methyltransferase type 11; KEGG: noc:Noc_1379 hypothetical protein; type 12 methyltransferase 2611883..2613070 Nitrosococcus halophilus Nc4 8917540 YP_003528008.1 CDS Nhal_2541 NC_013960.1 2613446 2613763 D KEGG: noc:Noc_2735 hypothetical protein; hypothetical protein 2613446..2613763 Nitrosococcus halophilus Nc4 8917541 YP_003528009.1 CDS Nhal_2542 NC_013960.1 2613792 2613944 R hypothetical protein complement(2613792..2613944) Nitrosococcus halophilus Nc4 8917542 YP_003528010.1 CDS Nhal_2543 NC_013960.1 2613995 2615188 R PFAM: glycoside hydrolase family 57; KEGG: noc:Noc_2734 glycoside hydrolase family protein; glycoside hydrolase family protein complement(2613995..2615188) Nitrosococcus halophilus Nc4 8917543 YP_003528011.1 CDS Nhal_2544 NC_013960.1 2615236 2616837 R KEGG: noc:Noc_2733 hypothetical protein; hypothetical protein complement(2615236..2616837) Nitrosococcus halophilus Nc4 8917544 YP_003528012.1 CDS Nhal_2545 NC_013960.1 2616931 2617053 R hypothetical protein complement(2616931..2617053) Nitrosococcus halophilus Nc4 8917545 YP_003528013.1 CDS Nhal_2546 NC_013960.1 2617099 2618166 R PFAM: methionine synthase vitamin-B12 independent; KEGG: glo:Glov_3721 methionine synthase vitamin-B12 independent; methionine synthase vitamin-B12 independent complement(2617099..2618166) Nitrosococcus halophilus Nc4 8917546 YP_003528014.1 CDS Nhal_2547 NC_013960.1 2618423 2620684 D KEGG: hch:HCH_03963 hypothetical protein; hypothetical protein 2618423..2620684 Nitrosococcus halophilus Nc4 8917547 YP_003528015.1 CDS Nhal_2548 NC_013960.1 2620681 2621964 D PFAM: glycosyl transferase group 1; KEGG: pca:Pcar_2860 glycosyltransferase; group 1 glycosyl transferase 2620681..2621964 Nitrosococcus halophilus Nc4 8917548 YP_003528016.1 CDS Nhal_2549 NC_013960.1 2622104 2622604 R PFAM: heat shock protein Hsp20; KEGG: noc:Noc_2731 heat shock protein HSP20; heat shock protein Hsp20 complement(2622104..2622604) Nitrosococcus halophilus Nc4 8917549 YP_003528017.1 CDS Nhal_2550 NC_013960.1 2622674 2623120 R PFAM: heat shock protein Hsp20; KEGG: noc:Noc_2730 heat shock protein HSP20; heat shock protein Hsp20 complement(2622674..2623120) Nitrosococcus halophilus Nc4 8917550 YP_003528018.1 CDS Nhal_2552 NC_013960.1 2624655 2626562 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_2729 ABC transporter ATPase; ABC transporter complement(2624655..2626562) Nitrosococcus halophilus Nc4 8917552 YP_003528019.1 CDS Nhal_2553 NC_013960.1 2626647 2627054 D KEGG: noc:Noc_2728 protein-methionine-S-oxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: methionine sulfoxide reductase B; methionine-R-sulfoxide reductase 2626647..2627054 Nitrosococcus halophilus Nc4 8917553 YP_003528020.1 CDS Nhal_2554 NC_013960.1 2627092 2628108 D PFAM: ApbE family lipoprotein; KEGG: noc:Noc_2727 ApbE-like lipoprotein; ApbE family lipoprotein 2627092..2628108 Nitrosococcus halophilus Nc4 8917554 YP_003528021.1 CDS Nhal_2555 NC_013960.1 2628240 2628959 D KEGG: noc:Noc_2725 hypothetical protein; hypothetical protein 2628240..2628959 Nitrosococcus halophilus Nc4 8917555 YP_003528022.1 CDS Nhal_2556 NC_013960.1 2628999 2629433 R KEGG: noc:Noc_2724 hypothetical protein; hypothetical protein complement(2628999..2629433) Nitrosococcus halophilus Nc4 8917556 YP_003528023.1 CDS Nhal_2557 NC_013960.1 2629645 2630529 D TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: noc:Noc_2719 ribonuclease BN; ribonuclease BN 2629645..2630529 Nitrosococcus halophilus Nc4 8917557 YP_003528024.1 CDS Nhal_2558 NC_013960.1 2630544 2631662 D TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: sucrose-6F-phosphate phosphohydrolase; protein of unknown function DUF709; haloacid dehalogenase type 3; KEGG: noc:Noc_2718 HAD family hydrolase; HAD-superfamily hydrolase 2630544..2631662 Nitrosococcus halophilus Nc4 8917558 YP_003528025.1 CDS Nhal_2559 NC_013960.1 2631916 2632524 D PFAM: hypothetical protein; SMART: WD-40 repeat protein; KEGG: WD40 repeat; hypothetical protein 2631916..2632524 Nitrosococcus halophilus Nc4 8917559 YP_003528026.1 CDS Nhal_2560 NC_013960.1 2632639 2633388 D hypothetical protein 2632639..2633388 Nitrosococcus halophilus Nc4 8917560 YP_003528027.1 CDS Nhal_2561 NC_013960.1 2633391 2634281 D PFAM: MscS Mechanosensitive ion channel; KEGG: vha:VIBHAR_02267 hypothetical protein; mechanosensitive ion channel MscS 2633391..2634281 Nitrosococcus halophilus Nc4 8917561 YP_003528028.1 CDS Nhal_2562 NC_013960.1 2634330 2634431 D hypothetical protein 2634330..2634431 Nitrosococcus halophilus Nc4 8917562 YP_003528029.1 CDS Nhal_2563 NC_013960.1 2634452 2635855 D KEGG: rec:RHECIAT_PB0000011 hypothetical protein; hypothetical protein 2634452..2635855 Nitrosococcus halophilus Nc4 8917563 YP_003528030.1 CDS Nhal_2564 NC_013960.1 2636035 2636523 R PFAM: protein of unknown function DUF411; KEGG: noc:Noc_0535 hypothetical protein; hypothetical protein complement(2636035..2636523) Nitrosococcus halophilus Nc4 8917564 YP_003528031.1 CDS Nhal_2565 NC_013960.1 2636813 2638015 R TIGRFAM: TraB family protein; PFAM: TraB determinant protein; KEGG: noc:Noc_0536 pheromone shutdown protein; TraB family protein complement(2636813..2638015) Nitrosococcus halophilus Nc4 8917565 YP_003528032.1 CDS Nhal_2566 NC_013960.1 2638127 2639095 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: noc:Noc_0537 sigma-54 specific transcriptional regulator, fis-type; Fis family transcriptional regulator complement(2638127..2639095) Nitrosococcus halophilus Nc4 8917566 YP_003528033.1 CDS Nhal_2567 NC_013960.1 2639174 2639887 R KEGG: noc:Noc_0538 hypothetical protein; hypothetical protein complement(2639174..2639887) Nitrosococcus halophilus Nc4 8917567 YP_003528034.1 CDS Nhal_2568 NC_013960.1 2640134 2640889 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_0539 ABC transporter ATPase; ABC transporter 2640134..2640889 Nitrosococcus halophilus Nc4 8917568 YP_003528035.1 CDS Nhal_2569 NC_013960.1 2640867 2642372 D PFAM: substrate-binding region of ABC-type glycine betaine transporter; binding-protein-dependent transporters inner membrane component; KEGG: noc:Noc_0540 ABC transporter inner membrane/substrate-binding proteins; glycine/betaine ABC transporter substrate-binding protein 2640867..2642372 Nitrosococcus halophilus Nc4 8917569 YP_003528036.1 CDS Nhal_2570 NC_013960.1 2642531 2644690 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: noc:Noc_0541 TonB-dependent receptor; TonB-dependent receptor 2642531..2644690 Nitrosococcus halophilus Nc4 8917570 YP_003528037.1 CDS Nhal_2571 NC_013960.1 2644795 2645976 D PFAM: glycosyl transferase group 1; KEGG: tgr:Tgr7_1999 glycosyl transferase group 1; group 1 glycosyl transferase 2644795..2645976 Nitrosococcus halophilus Nc4 8917571 YP_003528038.1 CDS Nhal_2572 NC_013960.1 2646060 2647481 D PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: xca:xccb100_1378 hypothetical protein; peptidase M20 2646060..2647481 Nitrosococcus halophilus Nc4 8917572 YP_003528039.1 CDS Nhal_2573 NC_013960.1 2647574 2649121 D PFAM: peptidase M48 Ste24p; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: noc:Noc_0402 peptidase M48, Ste24p; peptidase M48 Ste24p 2647574..2649121 Nitrosococcus halophilus Nc4 8917573 YP_003528040.1 CDS Nhal_2574 NC_013960.1 2649138 2650172 D PFAM: metallophosphoesterase; KEGG: noc:Noc_0403 metallophosphoesterase; metallophosphoesterase 2649138..2650172 Nitrosococcus halophilus Nc4 8917574 YP_003528041.1 CDS Nhal_2575 NC_013960.1 2650174 2650752 R PFAM: protein of unknown function DUF46; KEGG: noc:Noc_0421 hypothetical protein; hypothetical protein complement(2650174..2650752) Nitrosococcus halophilus Nc4 8917575 YP_003528042.1 CDS Nhal_2576 NC_013960.1 2651135 2651938 R PFAM: protein of unknown function DUF980; KEGG: noc:Noc_0422 hypothetical protein; hypothetical protein complement(2651135..2651938) Nitrosococcus halophilus Nc4 8917576 YP_003528043.1 CDS Nhal_2577 NC_013960.1 2651964 2652341 R PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: gur:Gura_3932 helix-turn-helix domain-containing protein; hypothetical protein complement(2651964..2652341) Nitrosococcus halophilus Nc4 8917577 YP_003528044.1 CDS Nhal_2578 NC_013960.1 2652425 2654914 R PFAM: protein of unknown function DUF214; KEGG: noc:Noc_0427 hypothetical protein; hypothetical protein complement(2652425..2654914) Nitrosococcus halophilus Nc4 8917578 YP_003528045.1 CDS Nhal_2579 NC_013960.1 2655004 2655684 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_0428 ABC transporter ATPase; ABC transporter complement(2655004..2655684) Nitrosococcus halophilus Nc4 8917579 YP_003528046.1 CDS Nhal_2580 NC_013960.1 2655725 2656306 D PFAM: lipolytic protein G-D-S-L family; KEGG: noc:Noc_0429 arylesterase; arylesterase 2655725..2656306 Nitrosococcus halophilus Nc4 8917580 YP_003528047.1 CDS Nhal_2583 NC_013960.1 2657266 2657424 D PFAM: CopG domain protein DNA-binding domain protein; CopG domain-containing protein DNA-binding domain-containing protein 2657266..2657424 Nitrosococcus halophilus Nc4 8917583 YP_003528048.1 CDS Nhal_2584 NC_013960.1 2657619 2658296 R PFAM: peptidylprolyl isomerase FKBP-type; FKBP-type peptidyl-prolyl isomerase domain protein; KEGG: noc:Noc_1219 peptidylprolyl isomerase; peptidylprolyl isomerase complement(2657619..2658296) Nitrosococcus halophilus Nc4 8917584 YP_003528049.1 CDS Nhal_2585 NC_013960.1 2658420 2658986 D PFAM: protein of unknown function DUF99; KEGG: tgr:Tgr7_2677 protein of unknown function DUF99; hypothetical protein 2658420..2658986 Nitrosococcus halophilus Nc4 8917585 YP_003528050.1 CDS Nhal_2586 NC_013960.1 2659435 2660169 D KEGG: noc:Noc_1220 hypothetical protein; hypothetical protein 2659435..2660169 Nitrosococcus halophilus Nc4 8917586 YP_003528051.1 CDS Nhal_2587 NC_013960.1 2660296 2661192 D KEGG: noc:Noc_1221 hypothetical protein; hypothetical protein 2660296..2661192 Nitrosococcus halophilus Nc4 8917587 YP_003528052.1 CDS Nhal_2588 NC_013960.1 2661214 2661681 D KEGG: noc:Noc_1222 hypothetical protein; hypothetical protein 2661214..2661681 Nitrosococcus halophilus Nc4 8917588 YP_003528053.1 CDS Nhal_2589 NC_013960.1 2661817 2662332 D PFAM: redoxin; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: noc:Noc_1223 hypothetical protein; redoxin 2661817..2662332 Nitrosococcus halophilus Nc4 8917589 YP_003528054.1 CDS Nhal_2590 NC_013960.1 2662458 2662706 D KEGG: sde:Sde_1565 arginine decarboxylase; arginine decarboxylase 2662458..2662706 Nitrosococcus halophilus Nc4 8917590 YP_003528055.1 CDS Nhal_2591 NC_013960.1 2662669 2665251 D KEGG: noc:Noc_1224 hypothetical protein; hypothetical protein 2662669..2665251 Nitrosococcus halophilus Nc4 8917591 YP_003528056.1 CDS Nhal_2592 NC_013960.1 2665332 2666300 D PFAM: ApbE family lipoprotein; KEGG: noc:Noc_1225 ApbE-like lipoprotein; ApbE family lipoprotein 2665332..2666300 Nitrosococcus halophilus Nc4 8917592 YP_003528057.1 CDS Nhal_2593 NC_013960.1 2666290 2667138 D PFAM: ABC transporter; KEGG: noc:Noc_1227 ABC-type polysaccharide/polyol phosphate export systems permease; sugar ABC transporter permease 2666290..2667138 Nitrosococcus halophilus Nc4 8917593 YP_003528058.1 CDS Nhal_2594 NC_013960.1 2667150 2668385 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_1228 ABC transporter ATPase; ABC transporter 2667150..2668385 Nitrosococcus halophilus Nc4 8917594 YP_003528059.1 CDS Nhal_2595 NC_013960.1 2668389 2669000 D KEGG: noc:Noc_1229 hypothetical protein; hypothetical protein 2668389..2669000 Nitrosococcus halophilus Nc4 8917595 YP_003528060.1 CDS Nhal_2596 NC_013960.1 2669015 2669641 D KEGG: noc:Noc_1230 hypothetical protein; hypothetical protein 2669015..2669641 Nitrosococcus halophilus Nc4 8917596 YP_003528061.1 CDS Nhal_2597 NC_013960.1 2669638 2670345 D KEGG: noc:Noc_1231 hypothetical protein; hypothetical protein 2669638..2670345 Nitrosococcus halophilus Nc4 8917597 YP_003528062.1 CDS Nhal_2598 NC_013960.1 2670345 2673476 D PFAM: glycosyl transferase family 2; methyltransferase type 12; methyltransferase type 11; sulfotransferase; methionine biosynthesis MetW protein; KEGG: noc:Noc_1232 glycosyl transferase; family 2 glycosyl transferase 2670345..2673476 Nitrosococcus halophilus Nc4 8917598 YP_003528063.1 CDS Nhal_2599 NC_013960.1 2673469 2674311 D PFAM: glycosyl transferase family 2; KEGG: noc:Noc_1233 glycosyl transferase; family 2 glycosyl transferase 2673469..2674311 Nitrosococcus halophilus Nc4 8917599 YP_003528064.1 CDS Nhal_2600 NC_013960.1 2674341 2675081 D PFAM: glycosyl transferase family 2; KEGG: noc:Noc_1235 glycosyl transferase; family 2 glycosyl transferase 2674341..2675081 Nitrosococcus halophilus Nc4 8917600 YP_003528065.1 CDS Nhal_2601 NC_013960.1 2675146 2676279 D PFAM: glycosyl transferase group 1; KEGG: noc:Noc_1236 glycosyl transferase, group 1; group 1 glycosyl transferase 2675146..2676279 Nitrosococcus halophilus Nc4 8917601 YP_003528066.1 CDS Nhal_2602 NC_013960.1 2676699 2677343 D KEGG: noc:Noc_1237 chaperone protein HtpG; chaperone protein HtpG 2676699..2677343 Nitrosococcus halophilus Nc4 8917602 YP_003528067.1 CDS Nhal_2603 NC_013960.1 2677358 2680336 D KEGG: noc:Noc_1238 molybdopterin oxidoreductase, iron-sulfur binding subunit; molybdopterin oxidoreductase, iron-sulfur binding subunit 2677358..2680336 Nitrosococcus halophilus Nc4 8917603 YP_003528068.1 CDS Nhal_2604 NC_013960.1 2680339 2681661 D PFAM: polysulphide reductase NrfD; KEGG: noc:Noc_1239 polysulphide reductase, NrfD; polysulfide reductase NrfD 2680339..2681661 Nitrosococcus halophilus Nc4 8917604 YP_003528069.1 CDS Nhal_2605 NC_013960.1 2681658 2682287 D KEGG: noc:Noc_1240 transmembrane prediction; hypothetical protein 2681658..2682287 Nitrosococcus halophilus Nc4 8917605 YP_003528070.1 CDS Nhal_2606 NC_013960.1 2682340 2682954 D KEGG: noc:Noc_1241 hypothetical protein; hypothetical protein 2682340..2682954 Nitrosococcus halophilus Nc4 8917606 YP_003528071.1 CDS Nhal_2607 NC_013960.1 2682951 2684123 D KEGG: noc:Noc_1242 hypothetical protein; hypothetical protein 2682951..2684123 Nitrosococcus halophilus Nc4 8917607 YP_003528072.1 CDS Nhal_2608 NC_013960.1 2684113 2684514 D KEGG: noc:Noc_1243 hypothetical protein; hypothetical protein 2684113..2684514 Nitrosococcus halophilus Nc4 8917608 YP_003528073.1 CDS Nhal_2609 NC_013960.1 2684575 2685198 D TIGRFAM: cytochrome C oxidase subunit II; PFAM: cytochrome C oxidase subunit II; KEGG: noc:Noc_1244 cytochrome C oxidase subunit II; cytochrome C oxidase subunit II 2684575..2685198 Nitrosococcus halophilus Nc4 8917609 YP_003528074.1 CDS Nhal_2610 NC_013960.1 2685228 2686832 D KEGG: noc:Noc_1245 cytochrome C oxidase; TIGRFAM: cytochrome C oxidase subunit I; PFAM: cytochrome C oxidase subunit I; cytochrome C oxidase subunit I 2685228..2686832 Nitrosococcus halophilus Nc4 8917610 YP_003528075.1 CDS Nhal_2611 NC_013960.1 2686871 2687515 D PFAM: cytochrome C oxidase subunit III; KEGG: noc:Noc_1246 cytochrome/quinol oxidase subunit 3; cytochrome C oxidase subunit III 2686871..2687515 Nitrosococcus halophilus Nc4 8917611 YP_003528076.1 CDS Nhal_2612 NC_013960.1 2687512 2687835 D TIGRFAM: caa(3)-type oxidase subunit IV; KEGG: noc:Noc_1247 Caa(3)-type oxidase subunit IV; caa(3)-type oxidase subunit IV 2687512..2687835 Nitrosococcus halophilus Nc4 8917612 YP_003528077.1 CDS Nhal_2613 NC_013960.1 2687898 2688236 R KEGG: noc:Noc_1443 hypothetical protein; hypothetical protein complement(2687898..2688236) Nitrosococcus halophilus Nc4 8917613 YP_003528078.1 CDS Nhal_2614 NC_013960.1 2688414 2690492 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: noc:Noc_1489 TonB-dependent receptor; TonB-dependent receptor 2688414..2690492 Nitrosococcus halophilus Nc4 8917614 YP_003528079.1 CDS Nhal_2615 NC_013960.1 2690673 2691800 R KEGG: noc:Noc_1491 phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2690673..2691800) Nitrosococcus halophilus Nc4 8917615 YP_003528080.1 CDS Nhal_2616 NC_013960.1 2691882 2693345 R PFAM: citrate transporter; KEGG: noc:Noc_1492 NhaD family Na(+)/H(+) antiporter; citrate transporter complement(2691882..2693345) Nitrosococcus halophilus Nc4 8917616 YP_003528081.1 CDS Nhal_2617 NC_013960.1 2693529 2695337 D PFAM: peptidase M61 domain protein; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: noc:Noc_1493 peptidase M61; peptidase M61 domain-containing protein 2693529..2695337 Nitrosococcus halophilus Nc4 8917617 YP_003528082.1 CDS Nhal_2619 NC_013960.1 2696096 2696242 D hypothetical protein 2696096..2696242 Nitrosococcus halophilus Nc4 8917619 YP_003528083.1 CDS Nhal_2620 NC_013960.1 2696715 2697035 D PFAM: small multidrug resistance protein; KEGG: mes:Meso_0982 small multidrug resistance protein; small multidrug resistance protein 2696715..2697035 Nitrosococcus halophilus Nc4 8917620 YP_003528084.1 CDS Nhal_2621 NC_013960.1 2697192 2697335 D hypothetical protein 2697192..2697335 Nitrosococcus halophilus Nc4 8917621 YP_003528085.1 CDS Nhal_2622 NC_013960.1 2697445 2697951 D PFAM: MarR family transcriptional regulator; SMART: MarR family transcriptional regulator; KEGG: bra:BRADO2387 MarR family transcriptional regulator; MarR family transcriptional regulator 2697445..2697951 Nitrosococcus halophilus Nc4 8917622 YP_003528086.1 CDS Nhal_2623 NC_013960.1 2698133 2698456 R PFAM: PemK family protein; KEGG: avn:Avin_36390 PemK-like protein; PemK family protein complement(2698133..2698456) Nitrosococcus halophilus Nc4 8917623 YP_003528087.1 CDS Nhal_2624 NC_013960.1 2698453 2698662 R KEGG: xcv:XCVc0024 hypothetical protein; hypothetical protein complement(2698453..2698662) Nitrosococcus halophilus Nc4 8917624 YP_003528088.1 CDS Nhal_2625 NC_013960.1 2698797 2699312 R TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: noc:Noc_0169 adenine phosphoribosyltransferase; adenine phosphoribosyltransferase complement(2698797..2699312) Nitrosococcus halophilus Nc4 8917625 YP_003528089.1 CDS Nhal_2626 NC_013960.1 2699361 2699645 D KEGG: nwi:Nwi_3047 hypothetical protein; hypothetical protein 2699361..2699645 Nitrosococcus halophilus Nc4 8917626 YP_003528090.1 CDS Nhal_2627 NC_013960.1 2699651 2700283 D KEGG: noc:Noc_0170 hypothetical protein; hypothetical protein 2699651..2700283 Nitrosococcus halophilus Nc4 8917627 YP_003528091.1 CDS Nhal_2628 NC_013960.1 2700420 2702960 D KEGG: noc:Noc_0171 DNA gyrase subunit A; TIGRFAM: DNA gyrase subunit alpha; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A; DNA gyrase subunit alpha 2700420..2702960 Nitrosococcus halophilus Nc4 8917628 YP_003528092.1 CDS Nhal_2629 NC_013960.1 2703000 2704082 D KEGG: noc:Noc_0172 phosphoserine aminotransferase; TIGRFAM: phosphoserine aminotransferase; PFAM: aminotransferase class V; phosphoserine aminotransferase 2703000..2704082 Nitrosococcus halophilus Nc4 8917629 YP_003528093.1 CDS Nhal_2630 NC_013960.1 2704145 2705308 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: noc:Noc_0173 D-isomer specific 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein 2704145..2705308 Nitrosococcus halophilus Nc4 8917630 YP_003528094.1 CDS Nhal_2631 NC_013960.1 2705387 2706472 D TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; chorismate mutase; KEGG: noc:Noc_0174 chorismate mutase; chorismate mutase 2705387..2706472 Nitrosococcus halophilus Nc4 8917631 YP_003528095.1 CDS Nhal_2632 NC_013960.1 2706494 2707606 D TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: noc:Noc_0175 histidinol-phosphate aminotransferase; histidinol-phosphate aminotransferase 2706494..2707606 Nitrosococcus halophilus Nc4 8917632 YP_003528096.1 CDS Nhal_2633 NC_013960.1 2707603 2708463 D PFAM: prephenate dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; NADP oxidoreductase coenzyme F420-dependent; KEGG: noc:Noc_0176 prephenate dehydrogenase; prephenate dehydrogenase 2707603..2708463 Nitrosococcus halophilus Nc4 8917633 YP_003528097.1 CDS Nhal_2634 NC_013960.1 2708497 2709828 D TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: noc:Noc_0177 3-phosphoshikimate 1-carboxyvinyltransferase; 3-phosphoshikimate 1-carboxyvinyltransferase 2708497..2709828 Nitrosococcus halophilus Nc4 8917634 YP_003528098.1 CDS Nhal_2635 NC_013960.1 2709847 2710518 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase; KEGG: noc:Noc_0178 HAD family hydrolase; HAD-superfamily hydrolase 2709847..2710518 Nitrosococcus halophilus Nc4 8917635 YP_003528099.1 CDS Nhal_2636 NC_013960.1 2710612 2711313 D TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; KEGG: noc:Noc_0179 cytidylate kinase; cytidylate kinase 2710612..2711313 Nitrosococcus halophilus Nc4 8917636 YP_003528100.1 CDS Nhal_2637 NC_013960.1 2711425 2713107 D KEGG: noc:Noc_0180 30S ribosomal protein S1; TIGRFAM: ribosomal protein S1; PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; 30S ribosomal protein S1 2711425..2713107 Nitrosococcus halophilus Nc4 8917637 YP_003528101.1 CDS Nhal_2638 NC_013960.1 2713170 2713460 D KEGG: noc:Noc_0181 integration host factor, beta subunit; TIGRFAM: integration host factor subunit beta; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; integration host factor subunit beta 2713170..2713460 Nitrosococcus halophilus Nc4 8917638 YP_003528102.1 CDS Nhal_2639 NC_013960.1 2713495 2713935 D PFAM: protein of unknown function DUF498; KEGG: noc:Noc_0182 hypothetical protein; hypothetical protein 2713495..2713935 Nitrosococcus halophilus Nc4 8917639 YP_003528103.1 CDS Nhal_2640 NC_013960.1 2713964 2714941 R TIGRFAM: RNA polymerase sigma factor RpoS; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; KEGG: noc:Noc_0183 RpoS; RNA polymerase sigma factor RpoS complement(2713964..2714941) Nitrosococcus halophilus Nc4 8917640 YP_003528104.1 CDS Nhal_2641 NC_013960.1 2715186 2715524 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: noc:Noc_0184 4Fe-4S ferredoxin iron-sulfur binding; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein complement(2715186..2715524) Nitrosococcus halophilus Nc4 8917641 YP_003528105.1 CDS Nhal_2642 NC_013960.1 2715738 2716031 D PFAM: protein of unknown function DUF1049; KEGG: aeh:Mlg_0933 hypothetical protein; hypothetical protein 2715738..2716031 Nitrosococcus halophilus Nc4 8917642 YP_003528106.1 CDS Nhal_2643 NC_013960.1 2716034 2717197 D SMART: hypothetical protein; KEGG: noc:Noc_0185 hypothetical protein; hypothetical protein 2716034..2717197 Nitrosococcus halophilus Nc4 8917643 YP_003528107.1 CDS Nhal_2644 NC_013960.1 2717322 2717672 D TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: noc:Noc_0186 arsenate reductase; arsenate reductase 2717322..2717672 Nitrosococcus halophilus Nc4 8917644 YP_003528108.1 CDS Nhal_2645 NC_013960.1 2717686 2718282 D TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; KEGG: noc:Noc_0187 flavodoxin/nitric oxide synthase; flavoprotein WrbA 2717686..2718282 Nitrosococcus halophilus Nc4 8917645 YP_003528109.1 CDS Nhal_2646 NC_013960.1 2718331 2719179 D TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein; KEGG: noc:Noc_0188 biotin--acetyl-CoA-carboxylase ligase; biotin/acetyl-CoA-carboxylase ligase 2718331..2719179 Nitrosococcus halophilus Nc4 8917646 YP_003528110.1 CDS Nhal_2647 NC_013960.1 2719176 2719976 D TIGRFAM: transcriptional activator, Baf family; PFAM: Bvg accessory factor; KEGG: noc:Noc_0189 pantothenate kinase; Baf family transcriptional activator 2719176..2719976 Nitrosococcus halophilus Nc4 8917647 YP_003528111.1 CDS Nhal_2648 NC_013960.1 2720162 2721274 D PFAM: protein of unknown function UPF0118; KEGG: noc:Noc_0190 hypothetical protein; hypothetical protein 2720162..2721274 Nitrosococcus halophilus Nc4 8917649 YP_003528112.1 CDS Nhal_2649 NC_013960.1 2721407 2722219 D PFAM: rhodanese; SMART: Rhodanese domain protein; KEGG: noc:Noc_0191 thiosulfate sulfurtransferase; rhodanese 2721407..2722219 Nitrosococcus halophilus Nc4 8917650 YP_003528113.1 CDS Nhal_2650 NC_013960.1 2722228 2723040 D PFAM: calcineurin phosphoesterase; metallophosphoesterase; KEGG: noc:Noc_0192 metallophosphoesterase; calcineurin phosphoesterase 2722228..2723040 Nitrosococcus halophilus Nc4 8917651 YP_003528114.1 CDS Nhal_2651 NC_013960.1 2723147 2723560 D PFAM: NUDIX hydrolase; KEGG: noc:Noc_0193 NUDIX hydrolase; NUDIX hydrolase 2723147..2723560 Nitrosococcus halophilus Nc4 8917652 YP_003528115.1 CDS Nhal_2652 NC_013960.1 2723613 2723858 D KEGG: hch:HCH_04373 hypothetical protein; hypothetical protein 2723613..2723858 Nitrosococcus halophilus Nc4 8917653 YP_003528116.1 CDS Nhal_2653 NC_013960.1 2723871 2724062 D hypothetical protein 2723871..2724062 Nitrosococcus halophilus Nc4 8917654 YP_003528117.1 CDS Nhal_2654 NC_013960.1 2724123 2724866 R PFAM: stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: noc:Noc_0964 stage II sporulation E; stage II sporulation E family protein complement(2724123..2724866) Nitrosococcus halophilus Nc4 8917655 YP_003528118.1 CDS Nhal_2655 NC_013960.1 2725119 2725454 D KEGG: amc:MADE_01093 hypothetical protein; hypothetical protein 2725119..2725454 Nitrosococcus halophilus Nc4 8917656 YP_003528119.1 CDS Nhal_2656 NC_013960.1 2725711 2726475 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: noc:Noc_0833 flagellar motor protein PomA; MotA/TolQ/ExbB proton channel 2725711..2726475 Nitrosococcus halophilus Nc4 8917657 YP_003528120.1 CDS Nhal_2657 NC_013960.1 2726492 2727340 D PFAM: OmpA/MotB domain protein; KEGG: noc:Noc_0834 flagellar motor protein MotB; OmpA/MotB domain-containing protein 2726492..2727340 Nitrosococcus halophilus Nc4 8917658 YP_003528121.1 CDS Nhal_2658 NC_013960.1 2727342 2728112 R KEGG: noc:Noc_0835 hypothetical protein; hypothetical protein complement(2727342..2728112) Nitrosococcus halophilus Nc4 8917659 YP_003528122.1 CDS Nhal_2659 NC_013960.1 2728109 2729209 R KEGG: aeh:Mlg_1158 hypothetical protein; hypothetical protein complement(2728109..2729209) Nitrosococcus halophilus Nc4 8917660 YP_003528123.1 CDS Nhal_2660 NC_013960.1 2729320 2729556 D SMART: zinc finger CDGSH-type domain protein; KEGG: lch:Lcho_0430 zinc finger CDGSH-type domain-containing protein; zinc finger CDGSH-type domain-containing protein 2729320..2729556 Nitrosococcus halophilus Nc4 8917661 YP_003528124.1 CDS Nhal_2661 NC_013960.1 2729602 2729793 D hypothetical protein 2729602..2729793 Nitrosococcus halophilus Nc4 8917662 YP_003528125.1 CDS Nhal_2662 NC_013960.1 2729884 2730675 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: noc:Noc_0836 oxidoreductase FAD/NAD(P)-binding; oxidoreductase FAD/NAD(P)-binding domain-containing protein complement(2729884..2730675) Nitrosococcus halophilus Nc4 8917663 YP_003528126.1 CDS Nhal_2663 NC_013960.1 2730825 2731106 R PFAM: protein of unknown function DUF427; KEGG: noc:Noc_0837 hypothetical protein; hypothetical protein complement(2730825..2731106) Nitrosococcus halophilus Nc4 8917664 YP_003528127.1 CDS Nhal_2664 NC_013960.1 2731139 2732134 R PFAM: transporter permease; ABC-3 protein; KEGG: noc:Noc_0838 transporter permease; transporter permease complement(2731139..2732134) Nitrosococcus halophilus Nc4 8917665 YP_003528128.1 CDS Nhal_2665 NC_013960.1 2732138 2732917 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_0839 ABC transporter ATPase; ABC transporter complement(2732138..2732917) Nitrosococcus halophilus Nc4 8917666 YP_003528129.1 CDS Nhal_2666 NC_013960.1 2732914 2733834 R PFAM: periplasmic binding protein; KEGG: noc:Noc_0840 periplasmic binding protein; periplasmic binding protein complement(2732914..2733834) Nitrosococcus halophilus Nc4 8917667 YP_003528130.1 CDS Nhal_2667 NC_013960.1 2733850 2735067 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: noc:Noc_0841 glycolate oxidase iron-sulfur subunit; hypothetical protein complement(2733850..2735067) Nitrosococcus halophilus Nc4 8917668 YP_003528131.1 CDS Nhal_2668 NC_013960.1 2735183 2736379 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: noc:Noc_0842 cystathionine gamma-synthase; methionine gamma-lyase 2735183..2736379 Nitrosococcus halophilus Nc4 8917669 YP_003528132.1 CDS Nhal_2669 NC_013960.1 2736417 2737394 R PFAM: peptidase S49 domain protein; peptidase S49; KEGG: noc:Noc_0843 periplasmic protease; peptidase S49 domain-containing protein complement(2736417..2737394) Nitrosococcus halophilus Nc4 8917670 YP_003528133.1 CDS Nhal_2670 NC_013960.1 2737440 2738510 R PFAM: FAD linked oxidase; KEGG: noc:Noc_0844 glycolate oxidase FAD binding subunit; FAD linked oxidase complement(2737440..2738510) Nitrosococcus halophilus Nc4 8917671 YP_003528134.1 CDS Nhal_2671 NC_013960.1 2738532 2738735 R hypothetical protein complement(2738532..2738735) Nitrosococcus halophilus Nc4 8917672 YP_003528135.1 CDS Nhal_2672 NC_013960.1 2738942 2739463 D KEGG: noc:Noc_0845 hypothetical protein; hypothetical protein 2738942..2739463 Nitrosococcus halophilus Nc4 8917673 YP_003528136.1 CDS Nhal_2673 NC_013960.1 2739846 2743322 D KEGG: noc:Noc_0846 DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III subunit alpha; PFAM: DNA polymerase III subunit alpha; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha 2739846..2743322 Nitrosococcus halophilus Nc4 8917674 YP_003528137.1 CDS Nhal_2674 NC_013960.1 2743427 2744410 D KEGG: noc:Noc_0847 two component diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein; response regulator receiver; diguanylate cyclase 2743427..2744410 Nitrosococcus halophilus Nc4 8917675 YP_003528138.1 CDS Nhal_2675 NC_013960.1 2744495 2745451 D TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, subunit alpha; PFAM: acetyl-CoA carboxylase subunit alpha; KEGG: noc:Noc_0848 acetyl-CoA carboxylase; acetyl-CoA carboxylase, carboxyl transferase subunit alpha 2744495..2745451 Nitrosococcus halophilus Nc4 8917676 YP_003528139.1 CDS Nhal_2676 NC_013960.1 2745461 2746789 D TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; protein of unkown function DUF1946 PP-loop ATpase; KEGG: noc:Noc_0849 tRNA(Ile)-lysidine synthase; tRNA(Ile)-lysidine synthetase 2745461..2746789 Nitrosococcus halophilus Nc4 8917677 YP_003528140.1 CDS Nhal_2677 NC_013960.1 2746881 2748527 D KEGG: noc:Noc_0850 CTP synthetase; TIGRFAM: CTP synthase; PFAM: CTP synthase-like; glutamine amidotransferase class-I; CTP synthase 2746881..2748527 Nitrosococcus halophilus Nc4 8917678 YP_003528141.1 CDS Nhal_2678 NC_013960.1 2748533 2749369 D TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: noc:Noc_0851 2-dehydro-3-deoxyphosphooctonate aldolase; 2-dehydro-3-deoxyphosphooctonate aldolase 2748533..2749369 Nitrosococcus halophilus Nc4 8917679 YP_003528142.1 CDS Nhal_2679 NC_013960.1 2749398 2750678 D KEGG: noc:Noc_0852 phosphopyruvate hydratase; TIGRFAM: enolase; PFAM: enolase; enolase 2749398..2750678 Nitrosococcus halophilus Nc4 8917680 YP_003528143.1 CDS Nhal_2680 NC_013960.1 2750699 2750974 D PFAM: septum formation initiator; KEGG: noc:Noc_0853 septum formation initiator; septum formation initiator 2750699..2750974 Nitrosococcus halophilus Nc4 8917681 YP_003528144.1 CDS Nhal_2681 NC_013960.1 2750971 2751675 D TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: noc:Noc_0854 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2750971..2751675 Nitrosococcus halophilus Nc4 8917682 YP_003528145.1 CDS Nhal_2682 NC_013960.1 2751672 2752145 D KEGG: noc:Noc_0855 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2751672..2752145 Nitrosococcus halophilus Nc4 8917683 YP_003528146.1 CDS Nhal_2683 NC_013960.1 2752155 2753207 D PFAM: tRNA pseudouridine synthase D TruD; KEGG: noc:Noc_0856 tRNA pseudouridine synthase D; tRNA pseudouridine synthase D TruD 2752155..2753207 Nitrosococcus halophilus Nc4 8917684 YP_003528147.1 CDS Nhal_2684 NC_013960.1 2753218 2754939 R KEGG: noc:Noc_0862 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; diguanylate cyclase complement(2753218..2754939) Nitrosococcus halophilus Nc4 8917685 YP_003528148.1 CDS Nhal_2685 NC_013960.1 2755039 2756424 D TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: noc:Noc_0863 uroporphyrin-III C-methyltransferase-like; uroporphyrin-III C-methyltransferase 2755039..2756424 Nitrosococcus halophilus Nc4 8917686 YP_003528149.1 CDS Nhal_2686 NC_013960.1 2756408 2757241 R KEGG: noc:Noc_0865 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase complement(2756408..2757241) Nitrosococcus halophilus Nc4 8917687 YP_003528150.1 CDS Nhal_2687 NC_013960.1 2757338 2757910 D PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: noc:Noc_0866 N-acetyl-anhydromuranmyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase family 2 2757338..2757910 Nitrosococcus halophilus Nc4 8917688 YP_003528151.1 CDS Nhal_2688 NC_013960.1 2757907 2758377 R hypothetical protein complement(2757907..2758377) Nitrosococcus halophilus Nc4 8917689 YP_003528152.1 CDS Nhal_2689 NC_013960.1 2758467 2759018 R TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: noc:Noc_0867 cobalamin adenosyltransferase; ATP/cobalamin adenosyltransferase complement(2758467..2759018) Nitrosococcus halophilus Nc4 8917690 YP_003528153.1 CDS Nhal_2690 NC_013960.1 2759082 2759399 D TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region; KEGG: noc:Noc_0868 hemimethylated DNA-binding region; hemimethylated DNA binding protein 2759082..2759399 Nitrosococcus halophilus Nc4 8917691 YP_003528154.1 CDS Nhal_2691 NC_013960.1 2759392 2759724 R KEGG: sde:Sde_1198 hypothetical protein; hypothetical protein complement(2759392..2759724) Nitrosococcus halophilus Nc4 8917692 YP_003528155.1 CDS Nhal_2693 NC_013960.1 2759864 2760259 R PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: noc:Noc_0870 RNA-binding S4; RNA-binding S4 domain-containing protein complement(2759864..2760259) Nitrosococcus halophilus Nc4 8917694 YP_003528156.1 CDS Nhal_2694 NC_013960.1 2760347 2761345 R PFAM: alpha/beta hydrolase fold; KEGG: noc:Noc_0872 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(2760347..2761345) Nitrosococcus halophilus Nc4 8917695 YP_003528157.1 CDS Nhal_2695 NC_013960.1 2761353 2763320 R TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: noc:Noc_0873 acetyl-CoA synthetase; acetate/CoA ligase complement(2761353..2763320) Nitrosococcus halophilus Nc4 8917696 YP_003528158.1 CDS Nhal_2696 NC_013960.1 2763884 2764483 D PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: noc:Noc_0878 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 2763884..2764483 Nitrosococcus halophilus Nc4 8917697 YP_003528159.1 CDS Nhal_2697 NC_013960.1 2764561 2764845 D KEGG: noc:Noc_3005 hypothetical protein; hypothetical protein 2764561..2764845 Nitrosococcus halophilus Nc4 8917698 YP_003528160.1 CDS Nhal_2698 NC_013960.1 2764911 2765348 R TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: noc:Noc_0879 suppressor protein DksA; RNA polymerase-binding protein DksA complement(2764911..2765348) Nitrosococcus halophilus Nc4 8917699 YP_003528161.1 CDS Nhal_2699 NC_013960.1 2765726 2766496 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: noc:Noc_0880 HAD family hydrolase; HAD-superfamily hydrolase 2765726..2766496 Nitrosococcus halophilus Nc4 8917700 YP_003528162.1 CDS Nhal_2700 NC_013960.1 2766493 2767653 D PFAM: aminotransferase class I and II; KEGG: noc:Noc_0881 hypothetical protein; class I and II aminotransferase 2766493..2767653 Nitrosococcus halophilus Nc4 8917701 YP_003528163.1 CDS Nhal_2701 NC_013960.1 2767714 2768457 R PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: hypothetical protein; type 11 methyltransferase complement(2767714..2768457) Nitrosococcus halophilus Nc4 8917702 YP_003528164.1 CDS Nhal_2702 NC_013960.1 2768472 2769218 R KEGG: bxe:Bxe_C0064 polar amino acid ABC transporter ATPase; TIGRFAM: ectoine/hydroxyectoine ABC transporter ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA; ectoine/hydroxyectoine ABC transporter ATP-binding protein complement(2768472..2769218) Nitrosococcus halophilus Nc4 8917703 YP_003528165.1 CDS Nhal_2703 NC_013960.1 2769256 2769909 R TIGRFAM: ectoine/hydroxyectoine ABC transporter permease protein EhuD; polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: bbr:BB2162 inner membrane component of binding-protein-dependent transporter; ectoine/hydroxyectoine ABC transporter permease EhuD complement(2769256..2769909) Nitrosococcus halophilus Nc4 8917704 YP_003528166.1 CDS Nhal_2704 NC_013960.1 2769913 2770557 R TIGRFAM: ectoine/hydroxyectoine ABC transporter permease protein EhuC; polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: bbr:BB2161 inner membrane component of binding-protein-dependent transporter; ectoine/hydroxyectoine ABC transporter permease EhuC complement(2769913..2770557) Nitrosococcus halophilus Nc4 8917705 YP_003528167.1 CDS Nhal_2705 NC_013960.1 2770596 2771510 R KEGG: bpt:Bpet2825 extracellular solute-binding protein; TIGRFAM: ectoine/hydroxyectoine ABC transporter solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ectoine/hydroxyectoine ABC transporter solute-binding protein complement(2770596..2771510) Nitrosococcus halophilus Nc4 8917706 YP_003528168.1 CDS Nhal_2706 NC_013960.1 2771539 2772447 R TIGRFAM: ectoine hydroxylase; PFAM: phytanoyl-CoA dioxygenase; KEGG: noc:Noc_1560 phytanoyl-CoA dioxygenase; ectoine hydroxylase complement(2771539..2772447) Nitrosococcus halophilus Nc4 8917707 YP_003528169.1 CDS Nhal_2707 NC_013960.1 2772610 2773944 R TIGRFAM: diaminobutyrate/2-oxoglutarate aminotransferase; 2,4-diaminobutyrate 4-transaminase; PFAM: aminotransferase class-III; KEGG: noc:Noc_1561 diaminobutyrate--2-oxoglutarate aminotransferase; diaminobutyrate/2-oxoglutarate aminotransferase complement(2772610..2773944) Nitrosococcus halophilus Nc4 8917708 YP_003528170.1 CDS Nhal_2708 NC_013960.1 2774036 2774524 R KEGG: noc:Noc_1562 proteinase inhibitor I3, Kunitz legume; TIGRFAM: L-2,4-diaminobutyric acid acetyltransferase; PFAM: GCN5-related N-acetyltransferase; L-2,4-diaminobutyric acid acetyltransferase complement(2774036..2774524) Nitrosococcus halophilus Nc4 8917709 YP_003528171.1 CDS Nhal_2709 NC_013960.1 2775395 2776387 D PFAM: sodium/calcium exchanger membrane region; KEGG: psa:PST_1009 Ca2+/Na+ antiporter; sodium/calcium exchanger membrane protein 2775395..2776387 Nitrosococcus halophilus Nc4 8917710 YP_003528172.1 CDS Nhal_2710 NC_013960.1 2776451 2777971 R TIGRFAM: sodium/proline symporter; SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: noc:Noc_1575 sodium/proline symporter; sodium/proline symporter complement(2776451..2777971) Nitrosococcus halophilus Nc4 8917711 YP_003528173.1 CDS Nhal_2711 NC_013960.1 2778010 2779107 R PFAM: ABC transporter; KEGG: noc:Noc_1781 ABC transporter inner membrane subunit; ABC transporter complement(2778010..2779107) Nitrosococcus halophilus Nc4 8917712 YP_003528174.1 CDS Nhal_2712 NC_013960.1 2779115 2780272 R PFAM: ABC transporter; KEGG: noc:Noc_1780 ABC transporter inner membrane subunit; ABC transporter complement(2779115..2780272) Nitrosococcus halophilus Nc4 8917713 YP_003528175.1 CDS Nhal_2713 NC_013960.1 2780277 2780384 R hypothetical protein complement(2780277..2780384) Nitrosococcus halophilus Nc4 8917714 YP_003528176.1 CDS Nhal_2714 NC_013960.1 2780456 2782207 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_1779 ABC transporter ATPase; ABC transporter complement(2780456..2782207) Nitrosococcus halophilus Nc4 8917715 YP_003528177.1 CDS Nhal_2715 NC_013960.1 2782211 2783191 R PFAM: secretion protein HlyD; KEGG: noc:Noc_1778 secretion protein HlyD; secretion protein HlyD complement(2782211..2783191) Nitrosococcus halophilus Nc4 8917716 YP_003528178.1 CDS Nhal_2716 NC_013960.1 2783309 2783689 R PFAM: protein of unknown function DUF1555; KEGG: tbd:Tbd_0194 hypothetical protein; hypothetical protein complement(2783309..2783689) Nitrosococcus halophilus Nc4 8917717 YP_003528179.1 CDS Nhal_2719 NC_013960.1 2785210 2786448 R PFAM: beta-ketoacyl synthase; KEGG: noc:Noc_1777 beta-ketoacyl synthase; beta-ketoacyl synthase complement(2785210..2786448) Nitrosococcus halophilus Nc4 8917720 YP_003528180.1 CDS Nhal_2720 NC_013960.1 2786615 2787391 R KEGG: tgr:Tgr7_2642 hypothetical protein; hypothetical protein complement(2786615..2787391) Nitrosococcus halophilus Nc4 8917721 YP_003528181.1 CDS Nhal_2721 NC_013960.1 2787369 2788220 R PFAM: protein of unknown function DUF692; KEGG: mca:MCA3108 hypothetical protein; hypothetical protein complement(2787369..2788220) Nitrosococcus halophilus Nc4 8917722 YP_003528182.1 CDS Nhal_2722 NC_013960.1 2788368 2788589 D hypothetical protein 2788368..2788589 Nitrosococcus halophilus Nc4 8917723 YP_003528183.1 CDS Nhal_2723 NC_013960.1 2788576 2789037 D hypothetical protein 2788576..2789037 Nitrosococcus halophilus Nc4 8917724 YP_003528184.1 CDS Nhal_2724 NC_013960.1 2789102 2789731 R KEGG: afw:Anae109_4078 membrane protein-like protein; hypothetical protein complement(2789102..2789731) Nitrosococcus halophilus Nc4 8917725 YP_003528185.1 CDS Nhal_2725 NC_013960.1 2789728 2789910 R hypothetical protein complement(2789728..2789910) Nitrosococcus halophilus Nc4 8917726 YP_003528186.1 CDS Nhal_2726 NC_013960.1 2790428 2790655 D KEGG: bac:BamMC406_6741 MazE family transcriptional regulator; MazE family transcriptional regulator 2790428..2790655 Nitrosococcus halophilus Nc4 8917727 YP_003528187.1 CDS Nhal_2727 NC_013960.1 2790652 2790969 D PFAM: PemK family protein; KEGG: cti:RALTA_A1745 PemK-like protein; toxin of a toxin-antitoxin system; PemK family protein 2790652..2790969 Nitrosococcus halophilus Nc4 8917728 YP_003528188.1 CDS Nhal_2729 NC_013960.1 2791876 2793021 D PFAM: transposase IS4 family protein; KEGG: aby:ABAYE3624 IS4 family transposase; transposase IS4 family protein 2791876..2793021 Nitrosococcus halophilus Nc4 8917730 YP_003528189.1 CDS Nhal_2732 NC_013960.1 2794878 2795015 D hypothetical protein 2794878..2795015 Nitrosococcus halophilus Nc4 8917733 YP_003528190.1 CDS Nhal_2733 NC_013960.1 2795155 2796156 D PFAM: peptidase M28; peptidase M20; KEGG: gur:Gura_1976 peptidase M28; peptidase M28 2795155..2796156 Nitrosococcus halophilus Nc4 8917734 YP_003528191.1 CDS Nhal_2735 NC_013960.1 2796617 2797183 D KEGG: hypothetical protein; hypothetical protein 2796617..2797183 Nitrosococcus halophilus Nc4 8917736 YP_003528192.1 CDS Nhal_2736 NC_013960.1 2797383 2798525 D TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: pin:Ping_3063 transposase, IS605 OrfB family protein; transposase, IS605 OrfB family 2797383..2798525 Nitrosococcus halophilus Nc4 8917737 YP_003528193.1 CDS Nhal_2737 NC_013960.1 2799593 2800311 D hypothetical protein join(2799593..2799871,2799871..2800311) Nitrosococcus halophilus Nc4 8917738 YP_003528194.1 CDS Nhal_2738 NC_013960.1 2800519 2801817 D TIGRFAM: glycosyltransferase, MGT family; PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; glycosyltransferase 28 domain; KEGG: xau:Xaut_3579 glycosyl transferase; glycosyltransferase, MGT family 2800519..2801817 Nitrosococcus halophilus Nc4 8917739 YP_003528195.1 CDS Nhal_2740 NC_013960.1 2802568 2802819 D KEGG: noc:Noc_3005 hypothetical protein; hypothetical protein 2802568..2802819 Nitrosococcus halophilus Nc4 8917741 YP_003528196.1 CDS Nhal_2742 NC_013960.1 2803267 2803425 D hypothetical protein 2803267..2803425 Nitrosococcus halophilus Nc4 8917743 YP_003528197.1 CDS Nhal_2743 NC_013960.1 2803431 2803853 R PFAM: Domain of unknown function DUF1841; KEGG: noc:Noc_1168 hypothetical protein; hypothetical protein complement(2803431..2803853) Nitrosococcus halophilus Nc4 8917744 YP_003528198.1 CDS Nhal_2744 NC_013960.1 2803857 2804528 R KEGG: noc:Noc_1169 endonuclease III/Nth; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; iron-sulfur cluster loop; endonuclease III complement(2803857..2804528) Nitrosococcus halophilus Nc4 8917745 YP_003528199.1 CDS Nhal_2745 NC_013960.1 2804544 2805251 R TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: noc:Noc_1170 SoxR-reducing system protein RsxE; RnfABCDGE type electron transport complex subunit E complement(2804544..2805251) Nitrosococcus halophilus Nc4 8917746 YP_003528200.1 CDS Nhal_2746 NC_013960.1 2805235 2805861 R TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: noc:Noc_1171 electron transport complex, RnfABCDGE type, G subunit; RnfABCDGE type electron transport complex subunit G complement(2805235..2805861) Nitrosococcus halophilus Nc4 8917747 YP_003528201.1 CDS Nhal_2747 NC_013960.1 2805876 2806913 R TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: noc:Noc_1172 electron transport complex, RnfABCDGE type, D subunit; RnfABCDGE type electron transport complex subunit D complement(2805876..2806913) Nitrosococcus halophilus Nc4 8917748 YP_003528202.1 CDS Nhal_2748 NC_013960.1 2806948 2808495 R TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: noc:Noc_1173 electron transport complex protein RnfC; RnfABCDGE type electron transport complex subunit C complement(2806948..2808495) Nitrosococcus halophilus Nc4 8917749 YP_003528203.1 CDS Nhal_2749 NC_013960.1 2808492 2809121 R TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Fe-S cluster domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: noc:Noc_1174 electron transport complex, RnfABCDGE type subunit beta; RnfABCDGE type electron transport complex subunit beta complement(2808492..2809121) Nitrosococcus halophilus Nc4 8917750 YP_003528204.1 CDS Nhal_2750 NC_013960.1 2809126 2809707 R TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: noc:Noc_0970 electron transport complex, RnfABCDGE type, subunit alpha; RnfABCDGE type electron transport complex subunit alpha complement(2809126..2809707) Nitrosococcus halophilus Nc4 8917751 YP_003528205.1 CDS Nhal_2751 NC_013960.1 2809723 2811747 R KEGG: noc:Noc_0971 methionyl-tRNA synthetase; TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase subunit beta; PFAM: tRNA synthetase class I (M); t-RNA-binding domain protein; methionyl-tRNA synthetase complement(2809723..2811747) Nitrosococcus halophilus Nc4 8917752 YP_003528206.1 CDS Nhal_2752 NC_013960.1 2811936 2813021 D PFAM: protein of unknown function DUF59; KEGG: noc:Noc_0972 hypothetical protein; hypothetical protein 2811936..2813021 Nitrosococcus halophilus Nc4 8917753 YP_003528207.1 CDS Nhal_2753 NC_013960.1 2813108 2813467 D PFAM: DsrE family protein; KEGG: mca:MCA0352 hypothetical protein; DsrE family protein 2813108..2813467 Nitrosococcus halophilus Nc4 8917754 YP_003528208.1 CDS Nhal_2754 NC_013960.1 2813559 2813981 D PFAM: transposase IS200-family protein; KEGG: noc:Noc_0387 transposase IS200; transposase IS200-family protein 2813559..2813981 Nitrosococcus halophilus Nc4 8917755 YP_003528209.1 CDS Nhal_2755 NC_013960.1 2813982 2815103 D TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0388 IS891/IS1136/IS1341 transposase; transposase, IS605 OrfB family 2813982..2815103 Nitrosococcus halophilus Nc4 8917756 YP_003528210.1 CDS Nhal_2756 NC_013960.1 2815372 2815794 D KEGG: noc:Noc_0974 hypothetical protein; hypothetical protein 2815372..2815794 Nitrosococcus halophilus Nc4 8917757 YP_003528211.1 CDS Nhal_2757 NC_013960.1 2815781 2816527 R KEGG: noc:Noc_0975 hypothetical protein; hypothetical protein complement(2815781..2816527) Nitrosococcus halophilus Nc4 8917758 YP_003528212.1 CDS Nhal_2758 NC_013960.1 2816564 2818468 R PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: scl:sce0051 hypothetical protein; CBS domain-containing protein complement(2816564..2818468) Nitrosococcus halophilus Nc4 8917759 YP_003528213.1 CDS Nhal_2759 NC_013960.1 2818483 2818941 R PFAM: protein of unknown function DUF1499; KEGG: noc:Noc_0976 hypothetical protein; hypothetical protein complement(2818483..2818941) Nitrosococcus halophilus Nc4 8917760 YP_003528214.1 CDS Nhal_2760 NC_013960.1 2819686 2820591 D PFAM: 5-nucleotidase; KEGG: noc:Noc_1810 5-nucleotidase; 5'-nucleotidase 2819686..2820591 Nitrosococcus halophilus Nc4 8917761 YP_003528215.1 CDS Nhal_2761 NC_013960.1 2820671 2822161 R PFAM: FAD linked oxidase; KEGG: noc:Noc_0495 D-lactate dehydrogenase (cytochrome); FAD linked oxidase complement(2820671..2822161) Nitrosococcus halophilus Nc4 8917762 YP_003528216.1 CDS Nhal_2762 NC_013960.1 2822232 2823344 D KEGG: noc:Noc_0494 kinase-like; kinase-like protein 2822232..2823344 Nitrosococcus halophilus Nc4 8917763 YP_003528217.1 CDS Nhal_2763 NC_013960.1 2823573 2823683 D hypothetical protein 2823573..2823683 Nitrosococcus halophilus Nc4 8917764 YP_003528218.1 CDS Nhal_2764 NC_013960.1 2823763 2824938 D PFAM: aminotransferase class V; KEGG: noc:Noc_2128 aminotransferase, class V; class V aminotransferase 2823763..2824938 Nitrosococcus halophilus Nc4 8917765 YP_003528219.1 CDS Nhal_2765 NC_013960.1 2824969 2826015 D KEGG: noc:Noc_2127 hypothetical protein; hypothetical protein 2824969..2826015 Nitrosococcus halophilus Nc4 8917766 YP_003528220.1 CDS Nhal_2766 NC_013960.1 2826025 2827155 R TIGRFAM: succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: noc:Noc_2126 succinyl-diaminopimelate desuccinylase; succinyl-diaminopimelate desuccinylase complement(2826025..2827155) Nitrosococcus halophilus Nc4 8917767 YP_003528221.1 CDS Nhal_2767 NC_013960.1 2827169 2827990 R TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; KEGG: noc:Noc_2125 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase complement(2827169..2827990) Nitrosococcus halophilus Nc4 8917768 YP_003528222.1 CDS Nhal_2768 NC_013960.1 2828013 2829212 R PFAM: aminotransferase class I and II; KEGG: noc:Noc_2124 hypothetical protein; class I and II aminotransferase complement(2828013..2829212) Nitrosococcus halophilus Nc4 8917769 YP_003528223.1 CDS Nhal_2769 NC_013960.1 2829841 2830293 D PFAM: protein of unknown function DUF150; KEGG: noc:Noc_2122 hypothetical protein; hypothetical protein 2829841..2830293 Nitrosococcus halophilus Nc4 8917771 YP_003528224.1 CDS Nhal_2770 NC_013960.1 2830338 2831858 D KEGG: noc:Noc_2121 transcription elongation factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: NusA domain protein; RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein; transcription termination factor NusA 2830338..2831858 Nitrosococcus halophilus Nc4 8917772 YP_003528225.1 CDS Nhal_2771 NC_013960.1 2831855 2834494 D TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain protein; Miro domain protein; GTP-binding protein HSR1-related; elongation factor Tu domain 2 protein; Initiation factor 2 associated domain protein; KEGG: noc:Noc_2120 translation initiation factor IF-2; translation initiation factor IF-2 2831855..2834494 Nitrosococcus halophilus Nc4 8917773 YP_003528226.1 CDS Nhal_2772 NC_013960.1 2834504 2834887 D TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; KEGG: noc:Noc_2119 ribosome-binding factor A; ribosome-binding factor A 2834504..2834887 Nitrosococcus halophilus Nc4 8917774 YP_003528227.1 CDS Nhal_2773 NC_013960.1 2834924 2835850 D TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase B; KEGG: noc:Noc_2118 tRNA pseudouridine synthase B; tRNA pseudouridine synthase B 2834924..2835850 Nitrosococcus halophilus Nc4 8917775 YP_003528228.1 CDS Nhal_2774 NC_013960.1 2835979 2836248 D TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; KEGG: noc:Noc_2117 ribosomal protein S15; 30S ribosomal protein S15 2835979..2836248 Nitrosococcus halophilus Nc4 8917776 YP_003528229.1 CDS Nhal_2775 NC_013960.1 2836327 2838462 D KEGG: noc:Noc_2116 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; Exoribonuclease, phosphorolytic domain 2; KH type 1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein; polyribonucleotide nucleotidyltransferase 2836327..2838462 Nitrosococcus halophilus Nc4 8917777 YP_003528230.1 CDS Nhal_2776 NC_013960.1 2838844 2841366 D KEGG: noc:Noc_2115 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase 2838844..2841366 Nitrosococcus halophilus Nc4 8917778 YP_003528231.1 CDS Nhal_2777 NC_013960.1 2841379 2843688 R PFAM: protein of unknown function DUF1631; KEGG: noc:Noc_2114 hypothetical protein; hypothetical protein complement(2841379..2843688) Nitrosococcus halophilus Nc4 8917779 YP_003528232.1 CDS Nhal_2778 NC_013960.1 2843865 2844383 R KEGG: noc:Noc_2113 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; 3-hydroxyacyl-ACP dehydratase complement(2843865..2844383) Nitrosococcus halophilus Nc4 8917780 YP_003528233.1 CDS Nhal_2779 NC_013960.1 2844553 2845362 D PFAM: protein of unknown function DUF455; KEGG: noc:Noc_2112 hypothetical protein; hypothetical protein 2844553..2845362 Nitrosococcus halophilus Nc4 8917781 YP_003528234.1 CDS Nhal_2780 NC_013960.1 2845592 2846620 D KEGG: noc:Noc_2111 dehydrogenase, E1 component; TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit; PFAM: dehydrogenase E1 component; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 2845592..2846620 Nitrosococcus halophilus Nc4 8917782 YP_003528235.1 CDS Nhal_2781 NC_013960.1 2846613 2847593 D PFAM: transketolase; transketolase domain protein; KEGG: noc:Noc_2110 pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component; transketolase 2846613..2847593 Nitrosococcus halophilus Nc4 8917783 YP_003528236.1 CDS Nhal_2782 NC_013960.1 2847620 2850313 D PFAM: dehydrogenase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; E3 binding domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: noc:Noc_2109 pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3) component and related enzyme; dehydrogenase 2847620..2850313 Nitrosococcus halophilus Nc4 8917784 YP_003528237.1 CDS Nhal_2783 NC_013960.1 2850366 2851583 D KEGG: noc:Noc_2108 argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: argininosuccinate synthase; argininosuccinate synthase 2850366..2851583 Nitrosococcus halophilus Nc4 8917785 YP_003528238.1 CDS Nhal_2784 NC_013960.1 2851598 2852410 R PFAM: NolW domain protein; KEGG: noc:Noc_2107 NolW-like; NolW domain-containing protein complement(2851598..2852410) Nitrosococcus halophilus Nc4 8917786 YP_003528239.1 CDS Nhal_2785 NC_013960.1 2852469 2853836 R TIGRFAM: adenylosuccinate lyase; PFAM: adenylosuccinate lyase domain protein; fumarate lyase; KEGG: noc:Noc_2106 adenylosuccinate lyase; adenylosuccinate lyase complement(2852469..2853836) Nitrosococcus halophilus Nc4 8917787 YP_003528240.1 CDS Nhal_2786 NC_013960.1 2854060 2855010 D KEGG: noc:Noc_2105 hypothetical protein; hypothetical protein 2854060..2855010 Nitrosococcus halophilus Nc4 8917788 YP_003528241.1 CDS Nhal_2787 NC_013960.1 2855394 2857946 D KEGG: noc:Noc_2103 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; TIGRFAM: aconitate hydratase 2; PFAM: Aconitase B, N-terminal; aconitate hydratase domain protein; aconitate hydratase 2 2855394..2857946 Nitrosococcus halophilus Nc4 8917789 YP_003528242.1 CDS Nhal_2788 NC_013960.1 2858239 2859126 D PFAM: HNH endonuclease; KEGG: mca:MCA0503 hypothetical protein; HNH endonuclease 2858239..2859126 Nitrosococcus halophilus Nc4 8917790 YP_003528243.1 CDS Nhal_2789 NC_013960.1 2859330 2860004 D PFAM: ThiJ/PfpI domain protein; KEGG: sme:SM_b20212 hypothetical protein; ThiJ/PfpI domain-containing protein 2859330..2860004 Nitrosococcus halophilus Nc4 8917791 YP_003528244.1 CDS Nhal_2790 NC_013960.1 2860276 2860668 D KEGG: noc:Noc_2043 hypothetical protein; hypothetical protein 2860276..2860668 Nitrosococcus halophilus Nc4 8917792 YP_003528245.1 CDS Nhal_2791 NC_013960.1 2860694 2861554 D PFAM: OmpA/MotB domain protein; KEGG: noc:Noc_2042 OmpA/MotB; OmpA/MotB domain-containing protein 2860694..2861554 Nitrosococcus halophilus Nc4 8917793 YP_003528246.1 CDS Nhal_2792 NC_013960.1 2861728 2862369 R PFAM: protein of unknown function DUF489; KEGG: noc:Noc_2041 hypothetical protein; hypothetical protein complement(2861728..2862369) Nitrosococcus halophilus Nc4 8917794 YP_003528247.1 CDS Nhal_2793 NC_013960.1 2862366 2863469 R TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: noc:Noc_2040 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase complement(2862366..2863469) Nitrosococcus halophilus Nc4 8917795 YP_003528248.1 CDS Nhal_2795 NC_013960.1 2864017 2864232 D hypothetical protein 2864017..2864232 Nitrosococcus halophilus Nc4 8917797 YP_003528249.1 CDS Nhal_2796 NC_013960.1 2864229 2865044 R PFAM: protein of unknown function DUF198; KEGG: noc:Noc_2039 hypothetical protein; hypothetical protein complement(2864229..2865044) Nitrosococcus halophilus Nc4 8917798 YP_003528250.1 CDS Nhal_2797 NC_013960.1 2865041 2865430 R PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: noc:Noc_2038 6-pyruvoyl tetrahydropterin synthase; hypothetical protein complement(2865041..2865430) Nitrosococcus halophilus Nc4 8917799 YP_003528251.1 CDS Nhal_2798 NC_013960.1 2865485 2866375 R PFAM: polyprenyl synthetase; KEGG: noc:Noc_2037 polyprenyl synthetase; polyprenyl synthetase complement(2865485..2866375) Nitrosococcus halophilus Nc4 8917800 YP_003528252.1 CDS Nhal_2799 NC_013960.1 2866377 2866610 R TIGRFAM: exodeoxyribonuclease VII small subunit; PFAM: exonuclease VII small subunit; KEGG: noc:Noc_2036 exonuclease VII, small subunit; exodeoxyribonuclease VII small subunit complement(2866377..2866610) Nitrosococcus halophilus Nc4 8917801 YP_003528253.1 CDS Nhal_2800 NC_013960.1 2866759 2867691 D TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; riboflavin kinase; KEGG: noc:Noc_2035 FMN adenylyltransferase, riboflavin kinase; riboflavin biosynthesis protein RibF 2866759..2867691 Nitrosococcus halophilus Nc4 8917802 YP_003528254.1 CDS Nhal_2801 NC_013960.1 2867898 2868560 R KEGG: dat:HRM2_22640 TPR domain protein; hypothetical protein complement(2867898..2868560) Nitrosococcus halophilus Nc4 8917803 YP_003528255.1 CDS Nhal_2802 NC_013960.1 2868702 2869658 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: noc:Noc_2032 glycerate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein complement(2868702..2869658) Nitrosococcus halophilus Nc4 8917804 YP_003528256.1 CDS Nhal_2803 NC_013960.1 2869954 2870310 D PFAM: Domain of unknown function DUF1820; KEGG: noc:Noc_2030 hypothetical protein; hypothetical protein 2869954..2870310 Nitrosococcus halophilus Nc4 8917805 YP_003528257.1 CDS Nhal_2804 NC_013960.1 2870314 2870598 R PFAM: protein of unknown function DUF861 cupin_3; KEGG: mca:MCA0659 hypothetical protein; hypothetical protein complement(2870314..2870598) Nitrosococcus halophilus Nc4 8917806 YP_003528258.1 CDS Nhal_2805 NC_013960.1 2870591 2870983 R KEGG: sfu:Sfum_2138 hypothetical protein; hypothetical protein complement(2870591..2870983) Nitrosococcus halophilus Nc4 8917807 YP_003528259.1 CDS Nhal_2807 NC_013960.1 2872625 2873938 D PFAM: protein of unknown function DUF323; KEGG: noc:Noc_2029 hypothetical protein; hypothetical protein 2872625..2873938 Nitrosococcus halophilus Nc4 8917809 YP_003528260.1 CDS Nhal_2808 NC_013960.1 2873935 2874912 D TIGRFAM: methyltransferase; KEGG: noc:Noc_2028 hypothetical protein; methyltransferase 2873935..2874912 Nitrosococcus halophilus Nc4 8917810 YP_003528261.1 CDS Nhal_2809 NC_013960.1 2875029 2876282 D PFAM: glycine hydroxymethyltransferase; KEGG: noc:Noc_2027 glycine hydroxymethyltransferase; glycine hydroxymethyltransferase 2875029..2876282 Nitrosococcus halophilus Nc4 8917811 YP_003528262.1 CDS Nhal_2810 NC_013960.1 2876297 2876821 D PFAM: ATP-cone domain protein; KEGG: noc:Noc_2026 transcriptional regulator NrdR; ATP-cone domain-containing protein 2876297..2876821 Nitrosococcus halophilus Nc4 8917812 YP_003528263.1 CDS Nhal_2811 NC_013960.1 2876953 2878074 D KEGG: noc:Noc_2025 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding; riboflavin biosynthesis protein RibD 2876953..2878074 Nitrosococcus halophilus Nc4 8917813 YP_003528264.1 CDS Nhal_2812 NC_013960.1 2878133 2878789 D KEGG: noc:Noc_2024 riboflavin synthase subunit alpha; TIGRFAM: riboflavin synthase, subunit alpha; PFAM: Lumazine-binding protein; riboflavin synthase subunit alpha 2878133..2878789 Nitrosococcus halophilus Nc4 8917814 YP_003528265.1 CDS Nhal_2813 NC_013960.1 2878796 2879902 D TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: noc:Noc_2023 GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase 2878796..2879902 Nitrosococcus halophilus Nc4 8917815 YP_003528266.1 CDS Nhal_2814 NC_013960.1 2879922 2880524 D PFAM: ribonuclease HII/HIII; KEGG: noc:Noc_2022 ribonuclease H; ribonuclease H 2879922..2880524 Nitrosococcus halophilus Nc4 8917816 YP_003528267.1 CDS Nhal_2815 NC_013960.1 2880799 2881176 R hypothetical protein complement(2880799..2881176) Nitrosococcus halophilus Nc4 8917817 YP_003528268.1 CDS Nhal_2816 NC_013960.1 2881233 2881373 R hypothetical protein complement(2881233..2881373) Nitrosococcus halophilus Nc4 8917818 YP_003528269.1 CDS Nhal_2817 NC_013960.1 2881405 2882109 D PFAM: Hly-III family protein; KEGG: dat:HRM2_17730 channel protein (hemolysin III family protein); Hly-III family protein 2881405..2882109 Nitrosococcus halophilus Nc4 8917819 YP_003528270.1 CDS Nhal_2818 NC_013960.1 2882238 2883578 R TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA; KEGG: avn:Avin_51740 Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA complement(2882238..2883578) Nitrosococcus halophilus Nc4 8917820 YP_003528271.1 CDS Nhal_2819 NC_013960.1 2883678 2883818 R PFAM: CopG domain protein DNA-binding domain protein; CopG domain-containing protein DNA-binding domain-containing protein complement(2883678..2883818) Nitrosococcus halophilus Nc4 8917821 YP_003528272.1 CDS Nhal_2820 NC_013960.1 2883853 2884572 D PFAM: transposase IS891/IS1136/IS1341 family; KEGG: noc:Noc_1184 transposase IS605; transposase IS891/IS1136/IS1341 family 2883853..2884572 Nitrosococcus halophilus Nc4 8917822 YP_003528273.1 CDS Nhal_2821 NC_013960.1 2884580 2885803 R PFAM: transposase mutator type; KEGG: son:SO_0708 transposase mutator family protein; transposase mutator type complement(2884580..2885803) Nitrosococcus halophilus Nc4 8917823 YP_003528274.1 CDS Nhal_2822 NC_013960.1 2885827 2886099 R KEGG: hypothetical protein; hypothetical protein complement(2885827..2886099) Nitrosococcus halophilus Nc4 8917824 YP_003528275.1 CDS Nhal_2823 NC_013960.1 2886305 2886757 R KEGG: mrd:Mrad2831_4674 hypothetical protein; hypothetical protein complement(2886305..2886757) Nitrosococcus halophilus Nc4 8917825 YP_003528276.1 CDS Nhal_2824 NC_013960.1 2886991 2887548 R PFAM: protein of unknown function DUF820; KEGG: hha:Hhal_1924 hypothetical protein; hypothetical protein complement(2886991..2887548) Nitrosococcus halophilus Nc4 8917826 YP_003528277.1 CDS Nhal_2825 NC_013960.1 2887779 2889407 D TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: noc:Noc_2019 peptide chain release factor 3; peptide chain release factor 3 2887779..2889407 Nitrosococcus halophilus Nc4 8917827 YP_003528278.1 CDS Nhal_2826 NC_013960.1 2889549 2890868 R PFAM: Dual specificity protein phosphatase; SMART: Dual specificity protein phosphatase; KEGG: dvm:DvMF_2186 dual specificity protein phosphatase; Dual specificity protein phosphatase complement(2889549..2890868) Nitrosococcus halophilus Nc4 8917828 YP_003528279.1 CDS Nhal_2827 NC_013960.1 2891485 2892492 D KEGG: neu:NE0117 hypothetical protein; hypothetical protein 2891485..2892492 Nitrosococcus halophilus Nc4 8917829 YP_003528280.1 CDS Nhal_2828 NC_013960.1 2892733 2893956 R PFAM: transposase mutator type; KEGG: son:SO_0708 transposase mutator family protein; transposase mutator type complement(2892733..2893956) Nitrosococcus halophilus Nc4 8917830 YP_003528281.1 CDS Nhal_2829 NC_013960.1 2894031 2895104 D TIGRFAM: CRISPR-associated protein, NE0113 family; KEGG: tgr:Tgr7_1789 CRISPR-associated protein, NE0113 family; CRISPR-associated protein, NE0113 family 2894031..2895104 Nitrosococcus halophilus Nc4 8917831 YP_003528282.1 CDS Nhal_2830 NC_013960.1 2895101 2897686 D TIGRFAM: CRISPR-associated protein, Csm1 family; KEGG: sfu:Sfum_1349 CRISPR-associated protein, Csm1 family; CRISPR-associated protein, Csm1 family 2895101..2897686 Nitrosococcus halophilus Nc4 8917832 YP_003528283.1 CDS Nhal_2831 NC_013960.1 2897701 2898162 D TIGRFAM: CRISPR-associated protein, Csm2 family; PFAM: protein of unknown function DUF310; KEGG: dol:Dole_0743 CRISPR-associated Csm2 family protein; CRISPR-associated protein, Csm2 family 2897701..2898162 Nitrosococcus halophilus Nc4 8917833 YP_003528284.1 CDS Nhal_2832 NC_013960.1 2898166 2898918 D TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: protein of unknown function DUF324; KEGG: dol:Dole_0742 CRISPR-associated RAMP Csm3 family protein; CRISPR-associated RAMP protein, Csm3 family 2898166..2898918 Nitrosococcus halophilus Nc4 8917834 YP_003528285.1 CDS Nhal_2833 NC_013960.1 2898915 2899877 D KEGG: sfu:Sfum_1346 uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)-like; DNA repair RAMP superfamily-like protein 2898915..2899877 Nitrosococcus halophilus Nc4 8917835 YP_003528286.1 CDS Nhal_2834 NC_013960.1 2899877 2901034 D TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; KEGG: sfu:Sfum_1345 CRISPR-associated RAMP protein, Csm5 family; CRISPR-associated RAMP protein, Csm5 family 2899877..2901034 Nitrosococcus halophilus Nc4 8917836 YP_003528287.1 CDS Nhal_2835 NC_013960.1 2901052 2901645 D PFAM: protein of unknown function DUF820; KEGG: noc:Noc_0762 hypothetical protein; hypothetical protein 2901052..2901645 Nitrosococcus halophilus Nc4 8917837 YP_003528288.1 CDS Nhal_2836 NC_013960.1 2901691 2902980 D TIGRFAM: CRISPR-associated protein, TIGR02710 family; KEGG: dol:Dole_0739 CRISPR-associated TIGR02710 family; CRISPR-associated protein 2901691..2902980 Nitrosococcus halophilus Nc4 8917838 YP_003528289.1 CDS Nhal_2837 NC_013960.1 2903144 2903680 D KEGG: tgr:Tgr7_1317 protein of unknown function DUF1568; hypothetical protein 2903144..2903680 Nitrosococcus halophilus Nc4 8917839 YP_003528290.1 CDS Nhal_2838 NC_013960.1 2903677 2903796 D hypothetical protein 2903677..2903796 Nitrosococcus halophilus Nc4 8917840 YP_003528291.1 CDS Nhal_2839 NC_013960.1 2903793 2904413 D hypothetical protein 2903793..2904413 Nitrosococcus halophilus Nc4 8917841 YP_003528292.1 CDS Nhal_2840 NC_013960.1 2904420 2905577 D PFAM: Domain of unknown function DUF1887; KEGG: tgr:Tgr7_1798 domain of unknown function DUF1887; hypothetical protein 2904420..2905577 Nitrosococcus halophilus Nc4 8917842 YP_003528293.1 CDS Nhal_2841 NC_013960.1 2906625 2908238 D PFAM: transposase IS4 family protein; KEGG: shn:Shewana3_3655 IS4 family transposase; transposase IS4 family protein 2906625..2908238 Nitrosococcus halophilus Nc4 8917843 YP_003528294.1 CDS Nhal_2842 NC_013960.1 2908805 2909089 D TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: hha:Hhal_0622 CRISPR-associated Cas2 family protein; CRISPR-associated protein Cas2 2908805..2909089 Nitrosococcus halophilus Nc4 8917844 YP_003528295.1 CDS Nhal_2843 NC_013960.1 2909388 2910371 D TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: hha:Hhal_0619 CRISPR-associated Cas1 family protein; CRISPR-associated protein Cas1 2909388..2910371 Nitrosococcus halophilus Nc4 8917845 YP_003528296.1 CDS Nhal_2844 NC_013960.1 2910368 2911156 D KEGG: hha:Hhal_0621 hypothetical protein; hypothetical protein 2910368..2911156 Nitrosococcus halophilus Nc4 8917846 YP_003528297.1 CDS Nhal_2845 NC_013960.1 2911156 2911494 D TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: neu:NE0110 hypothetical protein; CRISPR-associated protein Cas2 2911156..2911494 Nitrosococcus halophilus Nc4 8917847 YP_003528298.1 CDS Nhal_2846 NC_013960.1 2911498 2912895 D PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: noc:Noc_0930 alpha amylase, catalytic region; alpha amylase catalytic subunit 2911498..2912895 Nitrosococcus halophilus Nc4 8917848 YP_003528299.1 CDS Nhal_2847 NC_013960.1 2912931 2914739 D PFAM: glycoside hydrolase 15-related; KEGG: scl:sce6733 glycosyl hydrolase; glycoside hydrolase 15-like protein 2912931..2914739 Nitrosococcus halophilus Nc4 8917849 YP_003528300.1 CDS Nhal_2848 NC_013960.1 2914721 2916280 R KEGG: noc:Noc_2062 glucose-6-phosphate 1-dehydrogenase; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; glucose-6-phosphate 1-dehydrogenase complement(2914721..2916280) Nitrosococcus halophilus Nc4 8917850 YP_003528301.1 CDS Nhal_2849 NC_013960.1 2916284 2917726 R TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: noc:Noc_2061 6-phosphogluconate dehydrogenase; 6-phosphogluconate dehydrogenase complement(2916284..2917726) Nitrosococcus halophilus Nc4 8917851 YP_003528302.1 CDS Nhal_2850 NC_013960.1 2917872 2919722 D PFAM: glycoside hydrolase 15-related; KEGG: noc:Noc_2053 glycoside hydrolase 15-like protein; glycoside hydrolase 15-like protein 2917872..2919722 Nitrosococcus halophilus Nc4 8917852 YP_003528303.1 CDS Nhal_2851 NC_013960.1 2919725 2920987 R PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: noc:Noc_2054 Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase complement(2919725..2920987) Nitrosococcus halophilus Nc4 8917853 YP_003528304.1 CDS Nhal_2852 NC_013960.1 2921030 2922172 R PFAM: protein of unknown function UPF0118; KEGG: noc:Noc_2055 hypothetical protein; hypothetical protein complement(2921030..2922172) Nitrosococcus halophilus Nc4 8917854 YP_003528305.1 CDS Nhal_2853 NC_013960.1 2922236 2923366 R TIGRFAM: transaldolase; PFAM: transaldolase; KEGG: noc:Noc_2057 transaldolase; transaldolase complement(2922236..2923366) Nitrosococcus halophilus Nc4 8917855 YP_003528306.1 CDS Nhal_2854 NC_013960.1 2923486 2924799 D KEGG: afw:Anae109_0080 magnesium transporter; TIGRFAM: magnesium transporter; PFAM: MgtE integral membrane region; CBS domain containing protein; MgtE intracellular region; SMART: CBS domain containing protein; magnesium transporter 2923486..2924799 Nitrosococcus halophilus Nc4 8917856 YP_003528307.1 CDS Nhal_2855 NC_013960.1 2924861 2925349 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: noc:Noc_2186 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 2924861..2925349 Nitrosococcus halophilus Nc4 8917857 YP_003528308.1 CDS Nhal_2856 NC_013960.1 2925359 2926288 D PFAM: binding-protein-dependent transporters inner membrane component; KEGG: noc:Noc_2185 ABC transporter inner membrane subunit; binding-protein-dependent transporters inner membrane component 2925359..2926288 Nitrosococcus halophilus Nc4 8917858 YP_003528309.1 CDS Nhal_2857 NC_013960.1 2926285 2927085 D PFAM: binding-protein-dependent transporters inner membrane component; KEGG: noc:Noc_2184 ABC transporter inner membrane subunit; binding-protein-dependent transporters inner membrane component 2926285..2927085 Nitrosococcus halophilus Nc4 8917859 YP_003528310.1 CDS Nhal_2858 NC_013960.1 2927089 2928114 D PFAM: glycoside hydrolase; KEGG: noc:Noc_2183 glycoside hydrolase family protein; glycoside hydrolase 2927089..2928114 Nitrosococcus halophilus Nc4 8917860 YP_003528311.1 CDS Nhal_2859 NC_013960.1 2928199 2928408 R PFAM: YcfA family protein; KEGG: ype:YPO1818 hypothetical protein; YcfA family protein complement(2928199..2928408) Nitrosococcus halophilus Nc4 8917861 YP_003528312.1 CDS Nhal_2860 NC_013960.1 2928474 2928608 R PFAM: protein of unknown function UPF0150; KEGG: mpo:Mpop_1487 protein of unknown function UPF0150; hypothetical protein complement(2928474..2928608) Nitrosococcus halophilus Nc4 8917862 YP_003528313.1 CDS Nhal_2861 NC_013960.1 2928806 2929072 D PFAM: CopG domain protein DNA-binding domain protein; KEGG: dvl:Dvul_2607 CopG family transcriptional regulator; CopG domain-containing protein DNA-binding domain-containing protein 2928806..2929072 Nitrosococcus halophilus Nc4 8917863 YP_003528314.1 CDS Nhal_2862 NC_013960.1 2929069 2929392 D TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: gur:Gura_2718 addiction module antitoxin; RelE/StbE family addiction module toxin 2929069..2929392 Nitrosococcus halophilus Nc4 8917864 YP_003528315.1 CDS Nhal_2863 NC_013960.1 2929606 2930511 R KEGG: noc:Noc_0454 hypothetical protein; hypothetical protein complement(2929606..2930511) Nitrosococcus halophilus Nc4 8917865 YP_003528316.1 CDS Nhal_2864 NC_013960.1 2930706 2931665 D PFAM: patatin; KEGG: noc:Noc_0455 patatin; lysophospholipase 2930706..2931665 Nitrosococcus halophilus Nc4 8917866 YP_003528317.1 CDS Nhal_2865 NC_013960.1 2931703 2932251 D PFAM: phosphoribosyltransferase; KEGG: noc:Noc_0456 hypoxanthine-guanine phosphoribosyltransferase; phosphoribosyltransferase 2931703..2932251 Nitrosococcus halophilus Nc4 8917867 YP_003528318.1 CDS Nhal_2866 NC_013960.1 2932262 2933002 D PFAM: purine or other phosphorylase family 1; KEGG: noc:Noc_0457 5'-methylthioadenosine phosphorylase; S-methyl-5'-thioadenosine phosphorylase 2932262..2933002 Nitrosococcus halophilus Nc4 8917868 YP_003528319.1 CDS Nhal_2867 NC_013960.1 2932986 2933792 R KEGG: tgr:Tgr7_1357 hypothetical protein; hypothetical protein complement(2932986..2933792) Nitrosococcus halophilus Nc4 8917869 YP_003528320.1 CDS Nhal_2868 NC_013960.1 2933903 2934145 D hypothetical protein 2933903..2934145 Nitrosococcus halophilus Nc4 8917870 YP_003528321.1 CDS Nhal_2869 NC_013960.1 2934160 2934789 D KEGG: noc:Noc_0458 hypothetical protein; hypothetical protein 2934160..2934789 Nitrosococcus halophilus Nc4 8917871 YP_003528322.1 CDS Nhal_2870 NC_013960.1 2934824 2935450 D KEGG: noc:Noc_0459 hypothetical protein; hypothetical protein 2934824..2935450 Nitrosococcus halophilus Nc4 8917872 YP_003528323.1 CDS Nhal_2871 NC_013960.1 2935982 2937058 R PFAM: hypothetical protein; KEGG: noc:Noc_1458 WD-40-like beta propeller repeat-containing protein; hypothetical protein complement(2935982..2937058) Nitrosococcus halophilus Nc4 8917873 YP_003528324.1 CDS Nhal_2872 NC_013960.1 2937076 2940465 R PFAM: peptidase M28; SMART: PDZ/DHR/GLGF domain protein; KEGG: noc:Noc_1459 peptidase M28; peptidase M28 complement(2937076..2940465) Nitrosococcus halophilus Nc4 8917874 YP_003528325.1 CDS Nhal_2874 NC_013960.1 2940951 2941067 D hypothetical protein 2940951..2941067 Nitrosococcus halophilus Nc4 8917876 YP_003528326.1 CDS Nhal_2875 NC_013960.1 2941075 2941524 D KEGG: noc:Noc_1477 hypothetical protein; hypothetical protein 2941075..2941524 Nitrosococcus halophilus Nc4 8917877 YP_003528327.1 CDS Nhal_2876 NC_013960.1 2941588 2942334 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pna:Pnap_2835 ABC transporter; ABC transporter complement(2941588..2942334) Nitrosococcus halophilus Nc4 8917878 YP_003528328.1 CDS Nhal_2877 NC_013960.1 2942338 2943468 R PFAM: protein of unknown function DUF214; KEGG: glo:Glov_0230 protein of unknown function DUF214; hypothetical protein complement(2942338..2943468) Nitrosococcus halophilus Nc4 8917879 YP_003528329.1 CDS Nhal_2878 NC_013960.1 2943465 2944625 R TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: gsu:GSU0949 RND family efflux transporter MFP subunit; RND family efflux transporter MFP subunit complement(2943465..2944625) Nitrosococcus halophilus Nc4 8917880 YP_003528330.1 CDS Nhal_2879 NC_013960.1 2944622 2945266 R PFAM: TetR family transcriptional regulator; KEGG: tgr:Tgr7_0301 TetR family transcriptional regulator; TetR family transcriptional regulator complement(2944622..2945266) Nitrosococcus halophilus Nc4 8917881 YP_003528331.1 CDS Nhal_2880 NC_013960.1 2945462 2946652 R KEGG: noc:Noc_1481 hypothetical protein; hypothetical protein complement(2945462..2946652) Nitrosococcus halophilus Nc4 8917882 YP_003528332.1 CDS Nhal_2881 NC_013960.1 2947082 2947504 D PFAM: transposase IS200-family protein; KEGG: noc:Noc_0387 transposase IS200; transposase IS200-family protein 2947082..2947504 Nitrosococcus halophilus Nc4 8917883 YP_003528333.1 CDS Nhal_2882 NC_013960.1 2947505 2948626 D TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0388 IS891/IS1136/IS1341 transposase; transposase, IS605 OrfB family 2947505..2948626 Nitrosococcus halophilus Nc4 8917884 YP_003528334.1 CDS Nhal_2883 NC_013960.1 2948690 2948989 D KEGG: reh:H16_A1278 ATP-dependent transcriptional regulator containing adenylate cyclase related domains; ATP-dependent transcriptional regulator containing adenylate cyclase related domains 2948690..2948989 Nitrosococcus halophilus Nc4 8917885 YP_003528335.1 CDS Nhal_2884 NC_013960.1 2948964 2949404 D KEGG: reh:H16_A1278 ATP-dependent transcriptional regulator containing adenylate cyclase related domains; ATP-dependent transcriptional regulator containing adenylate cyclase related domains 2948964..2949404 Nitrosococcus halophilus Nc4 8917886 YP_003528336.1 CDS Nhal_2885 NC_013960.1 2949456 2949659 R KEGG: mxa:MXAN_3661 acetyltransferase; acetyltransferase complement(2949456..2949659) Nitrosococcus halophilus Nc4 8917887 YP_003528337.1 CDS Nhal_2887 NC_013960.1 2950069 2950374 D PFAM: protein of unknown function DUF59; KEGG: noc:Noc_1484 hypothetical protein; hypothetical protein 2950069..2950374 Nitrosococcus halophilus Nc4 8917889 YP_003528338.1 CDS Nhal_2888 NC_013960.1 2950417 2951565 D PFAM: NnrS family protein; KEGG: noc:Noc_1485 NnrS-like protein; NnrS family protein 2950417..2951565 Nitrosococcus halophilus Nc4 8917890 YP_003528339.1 CDS Nhal_2889 NC_013960.1 2952199 2952945 R KEGG: noc:Noc_1486 ABC-type phosphate/phosphonate transporter periplasmic component; phosphate/phosphonate ABC transporter substrate-binding protein complement(2952199..2952945) Nitrosococcus halophilus Nc4 8917891 YP_003528340.1 CDS Nhal_2890 NC_013960.1 2952969 2953445 R KEGG: noc:Noc_1487 PAS domain-containing protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; SMART: PAS domain containing protein; PAS sensor protein complement(2952969..2953445) Nitrosococcus halophilus Nc4 8917892 YP_003528341.1 CDS Nhal_2891 NC_013960.1 2953537 2953899 R PFAM: Roadblock/LC7 family protein; KEGG: noc:Noc_1488 roadblock/LC7 domain-contain protein; Roadblock/LC7 family protein complement(2953537..2953899) Nitrosococcus halophilus Nc4 8917893 YP_003528342.1 CDS Nhal_2892 NC_013960.1 2954408 2954590 R hypothetical protein complement(2954408..2954590) Nitrosococcus halophilus Nc4 8917894 YP_003528343.1 CDS Nhal_2893 NC_013960.1 2954668 2956245 R TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1248 proton-translocating NADH-quinone oxidoreductase, chain M; proton-translocating NADH-quinone oxidoreductase subunit M complement(2954668..2956245) Nitrosococcus halophilus Nc4 8917895 YP_003528344.1 CDS Nhal_2894 NC_013960.1 2956264 2957805 R TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1249 proton-translocating NADH-quinone oxidoreductase, chain M; proton-translocating NADH-quinone oxidoreductase subunit M complement(2956264..2957805) Nitrosococcus halophilus Nc4 8917896 YP_003528345.1 CDS Nhal_2895 NC_013960.1 2957816 2959351 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; KEGG: noc:Noc_1250 NADH dehydrogenase (quinone); NADH/Ubiquinone/plastoquinone (complex I) complement(2957816..2959351) Nitrosococcus halophilus Nc4 8917897 YP_003528346.1 CDS Nhal_2896 NC_013960.1 2959341 2962688 R KEGG: noc:Noc_1251 hypothetical protein; hypothetical protein complement(2959341..2962688) Nitrosococcus halophilus Nc4 8917898 YP_003528347.1 CDS Nhal_2897 NC_013960.1 2962716 2964170 R TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1252 proton-translocating NADH-quinone oxidoreductase, chain M; proton-translocating NADH-quinone oxidoreductase subunit M complement(2962716..2964170) Nitrosococcus halophilus Nc4 8917899 YP_003528348.1 CDS Nhal_2898 NC_013960.1 2964632 2965255 D PFAM: protein of unknown function DUF938; KEGG: noc:Noc_1253 hypothetical protein; hypothetical protein 2964632..2965255 Nitrosococcus halophilus Nc4 8917900 YP_003528349.1 CDS Nhal_2899 NC_013960.1 2965275 2966609 D KEGG: scl:sce1866 glucosyltransferase; sterol 3-beta-glucosyltransferase 2965275..2966609 Nitrosococcus halophilus Nc4 8917901 YP_003528350.1 CDS Nhal_2900 NC_013960.1 2966780 2969455 D TIGRFAM: 2-oxo-acid dehydrogenase E1 subunit, homodimeric type; KEGG: noc:Noc_1254 pyruvate dehydrogenase subunit E1; 2-oxo-acid dehydrogenase E1 subunit, homodimeric type 2966780..2969455 Nitrosococcus halophilus Nc4 8917902 YP_003528351.1 CDS Nhal_2901 NC_013960.1 2969470 2970795 D PFAM: dehydrogenase; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: noc:Noc_1255 branched-chain alpha-keto acid dehydrogenase subunit E2; dehydrogenase 2969470..2970795 Nitrosococcus halophilus Nc4 8917903 YP_003528352.1 CDS Nhal_2902 NC_013960.1 2970869 2972287 D TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: noc:Noc_1256 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase 2970869..2972287 Nitrosococcus halophilus Nc4 8917904 YP_003528353.1 CDS Nhal_2903 NC_013960.1 2972483 2973052 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: noc:Noc_1257 HNH endonuclease; HNH endonuclease 2972483..2973052 Nitrosococcus halophilus Nc4 8917905 YP_003528354.1 CDS Nhal_2904 NC_013960.1 2973148 2974110 D PFAM: UspA domain protein; KEGG: noc:Noc_1258 universal stress protein UspA; UspA domain-containing protein 2973148..2974110 Nitrosococcus halophilus Nc4 8917906 YP_003528355.1 CDS Nhal_2906 NC_013960.1 2975997 2976461 D hypothetical protein 2975997..2976461 Nitrosococcus halophilus Nc4 8917908 YP_003528356.1 CDS Nhal_2907 NC_013960.1 2976484 2979465 D PFAM: protein of unknown function DUF748; KEGG: noc:Noc_1259 hypothetical protein; hypothetical protein 2976484..2979465 Nitrosococcus halophilus Nc4 8917909 YP_003528357.1 CDS Nhal_2908 NC_013960.1 2979490 2980503 R KEGG: noc:Noc_1748 hypothetical protein; hypothetical protein complement(2979490..2980503) Nitrosococcus halophilus Nc4 8917910 YP_003528358.1 CDS Nhal_2909 NC_013960.1 2980797 2981651 D PFAM: metallophosphoesterase; KEGG: noc:Noc_1260 metallophosphoesterase; metallophosphoesterase 2980797..2981651 Nitrosococcus halophilus Nc4 8917911 YP_003528359.1 CDS Nhal_2910 NC_013960.1 2981754 2983151 R PFAM: beta-lactamase; Rhodanese domain protein; SMART: rhodanese; KEGG: metallo-beta-lactamase superfamily protein; K01069 hydroxyacylglutathione hydrolase; beta-lactamase complement(2981754..2983151) Nitrosococcus halophilus Nc4 8917912 YP_003528360.1 CDS Nhal_2911 NC_013960.1 2983368 2984327 D KEGG: rso:RS04819 lipoprotein transmembrane; lipoprotein transmembrane 2983368..2984327 Nitrosococcus halophilus Nc4 8917913 YP_003528361.1 CDS Nhal_2912 NC_013960.1 2984386 2985294 R PFAM: PP-loop domain protein; KEGG: noc:Noc_1596 ATPase; PP-loop domain-containing protein complement(2984386..2985294) Nitrosococcus halophilus Nc4 8917914 YP_003528362.1 CDS Nhal_2913 NC_013960.1 2985379 2987706 R PFAM: fatty acid cistrans isomerase; KEGG: abo:ABO_1700 esterified fatty acid cis/trans isomerase family protein; fatty acid cistrans isomerase complement(2985379..2987706) Nitrosococcus halophilus Nc4 8917915 YP_003528363.1 CDS Nhal_2914 NC_013960.1 2987738 2988853 R KEGG: mca:MCA0092 RNA 2'-O-ribose methyltransferase; RNA 2'-O-ribose methyltransferase complement(2987738..2988853) Nitrosococcus halophilus Nc4 8917916 YP_003528364.1 CDS Nhal_2915 NC_013960.1 2988871 2989506 R KEGG: noc:Noc_2080 methionine sulfoxide reductase A; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: methionine sulfoxide reductase A; peptide methionine sulfoxide reductase complement(2988871..2989506) Nitrosococcus halophilus Nc4 8917917 YP_003528365.1 CDS Nhal_2916 NC_013960.1 2989679 2990053 R PFAM: protein of unknown function DUF423; KEGG: noc:Noc_2079 hypothetical protein; hypothetical protein complement(2989679..2990053) Nitrosococcus halophilus Nc4 8917918 YP_003528366.1 CDS Nhal_2917 NC_013960.1 2990390 2990674 D KEGG: noc:Noc_1074 hypothetical protein; hypothetical protein 2990390..2990674 Nitrosococcus halophilus Nc4 8917919 YP_003528367.1 CDS Nhal_2918 NC_013960.1 2990755 2991108 R KEGG: noc:Noc_1075 hypothetical protein; hypothetical protein complement(2990755..2991108) Nitrosococcus halophilus Nc4 8917920 YP_003528368.1 CDS Nhal_2919 NC_013960.1 2991535 2992359 D PFAM: beta-lactamase; KEGG: psa:PST_3889 metallo-beta-lactamase; beta-lactamase 2991535..2992359 Nitrosococcus halophilus Nc4 8917921 YP_003528369.1 CDS Nhal_2920 NC_013960.1 2992489 2993661 R KEGG: nmu:Nmul_A1535 hypothetical protein; hypothetical protein complement(2992489..2993661) Nitrosococcus halophilus Nc4 8917922 YP_003528370.1 CDS Nhal_2921 NC_013960.1 2993669 2994454 R KEGG: mmw:Mmwyl1_4196 transcriptional regulator; transcriptional regulator complement(2993669..2994454) Nitrosococcus halophilus Nc4 8917923 YP_003528371.1 CDS Nhal_2922 NC_013960.1 2994529 2995257 D hypothetical protein 2994529..2995257 Nitrosococcus halophilus Nc4 8917924 YP_003528372.1 CDS Nhal_2923 NC_013960.1 2995254 2998109 D hypothetical protein 2995254..2998109 Nitrosococcus halophilus Nc4 8917925 YP_003528373.1 CDS Nhal_2924 NC_013960.1 2998112 2999110 D TIGRFAM: CRISPR-associated protein Csc2; CRISPR-associated protein Csc2 2998112..2999110 Nitrosococcus halophilus Nc4 8917926 YP_003528374.1 CDS Nhal_2925 NC_013960.1 2999107 2999790 D hypothetical protein 2999107..2999790 Nitrosococcus halophilus Nc4 8917927 YP_003528375.1 CDS Nhal_2926 NC_013960.1 2999781 3001769 D PFAM: DEAD/DEAH box helicase; helicase domain protein; SMART: DEAD-like helicase; KEGG: dvl:Dvul_2723 DEAD/DEAH box helicase domain-containing protein; DEAD/DEAH box helicase 2999781..3001769 Nitrosococcus halophilus Nc4 8917928 YP_003528376.1 CDS Nhal_2927 NC_013960.1 3001726 3002274 D PFAM: protein of unknown function DUF83; hypothetical protein 3001726..3002274 Nitrosococcus halophilus Nc4 8917929 YP_003528377.1 CDS Nhal_2928 NC_013960.1 3002284 3003252 D TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: cff:CFF8240_0665 CRISPR-associated protein Cas1; CRISPR-associated protein Cas1 3002284..3003252 Nitrosococcus halophilus Nc4 8917930 YP_003528378.1 CDS Nhal_2929 NC_013960.1 3003259 3003561 D TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; CRISPR-associated protein Cas2 3003259..3003561 Nitrosococcus halophilus Nc4 8917931 YP_003528379.1 CDS Nhal_2930 NC_013960.1 3006027 3006527 R KEGG: cak:Caul_5241 transposase; transposase complement(3006027..3006527) Nitrosococcus halophilus Nc4 8917932 YP_003528380.1 CDS Nhal_2931 NC_013960.1 3006554 3006994 R KEGG: mno:Mnod_8191 transposase and inactivated derivatives-like protein; transposase complement(3006554..3006994) Nitrosococcus halophilus Nc4 8917933 YP_003528381.1 CDS Nhal_2932 NC_013960.1 3007817 3008431 D KEGG: sme:SMa2167 hypothetical protein; transcriptional regulator 3007817..3008431 Nitrosococcus halophilus Nc4 8917934 YP_003528382.1 CDS Nhal_2933 NC_013960.1 3009000 3009260 D hypothetical protein 3009000..3009260 Nitrosococcus halophilus Nc4 8917935 YP_003528383.1 CDS Nhal_2934 NC_013960.1 3009465 3009878 R PFAM: transposase IS200-family protein; KEGG: noc:Noc_1500 transposase IS200; transposase IS200-family protein complement(3009465..3009878) Nitrosococcus halophilus Nc4 8917936 YP_003528384.1 CDS Nhal_2935 NC_013960.1 3009935 3011110 D TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_1501 transposase; transposase, IS605 OrfB family 3009935..3011110 Nitrosococcus halophilus Nc4 8917937 YP_003528385.1 CDS Nhal_2936 NC_013960.1 3011467 3013173 D TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: aeh:Mlg_0309 choline/carnitine/betaine transporter; choline/carnitine/betaine transporter 3011467..3013173 Nitrosococcus halophilus Nc4 8917938 YP_003528386.1 CDS Nhal_2937 NC_013960.1 3013259 3013942 R PFAM: rhomboid family protein; KEGG: noc:Noc_1066 rhomboid-like protein; rhomboid family protein complement(3013259..3013942) Nitrosococcus halophilus Nc4 8917939 YP_003528387.1 CDS Nhal_2938 NC_013960.1 3014137 3014904 D KEGG: pla:Plav_0049 OsmC family protein; OsmC family protein 3014137..3014904 Nitrosococcus halophilus Nc4 8917940 YP_003528388.1 CDS Nhal_2939 NC_013960.1 3014864 3015625 R KEGG: dal:Dalk_2704 hypothetical protein; hypothetical protein complement(3014864..3015625) Nitrosococcus halophilus Nc4 8917941 YP_003528389.1 CDS Nhal_2940 NC_013960.1 3015900 3018059 D PFAM: SNARE associated Golgi protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: maq:Maqu_0145 pyridine nucleotide-disulphide oxidoreductase dimerisation region; hypothetical protein 3015900..3018059 Nitrosococcus halophilus Nc4 8917942 YP_003528390.1 CDS Nhal_2941 NC_013960.1 3018056 3018241 R KEGG: rhi:NGR_c07220 S-2-haloacid dehalogenase; 2-haloalkanoic acid dehalogenase; L-2-haloacid dehalogenase; DEHC; S-2-haloacid dehalogenase complement(3018056..3018241) Nitrosococcus halophilus Nc4 8917943 YP_003528391.1 CDS Nhal_2942 NC_013960.1 3018234 3018515 R KEGG: cbd:CBUD_0810 BRAMP; BRAMP protein complement(3018234..3018515) Nitrosococcus halophilus Nc4 8917944 YP_003528392.1 CDS Nhal_2944 NC_013960.1 3019162 3020385 R PFAM: transposase mutator type; KEGG: son:SO_0708 transposase mutator family protein; transposase mutator type complement(3019162..3020385) Nitrosococcus halophilus Nc4 8917946 YP_003528393.1 CDS Nhal_2945 NC_013960.1 3021593 3021988 D KEGG: pha:PSHAb0233 hypothetical protein; hypothetical protein 3021593..3021988 Nitrosococcus halophilus Nc4 8917947 YP_003528394.1 CDS Nhal_2946 NC_013960.1 3022231 3022410 D hypothetical protein 3022231..3022410 Nitrosococcus halophilus Nc4 8917948 YP_003528395.1 CDS Nhal_2948 NC_013960.1 3022558 3023967 R PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: noc:Noc_0965 pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3) component and related enzyme; pyridine nucleotide-disulfide oxidoreductase dimerization subunit complement(3022558..3023967) Nitrosococcus halophilus Nc4 8917950 YP_003528396.1 CDS Nhal_2949 NC_013960.1 3024175 3025263 D KEGG: aeh:Mlg_2502 hypothetical protein; hypothetical protein 3024175..3025263 Nitrosococcus halophilus Nc4 8917951 YP_003528397.1 CDS Nhal_2950 NC_013960.1 3025265 3025837 D KEGG: aeh:Mlg_2503 hypothetical protein; hypothetical protein 3025265..3025837 Nitrosococcus halophilus Nc4 8917952 YP_003528398.1 CDS Nhal_2951 NC_013960.1 3025847 3026101 R KEGG: afw:Anae109_1555 transmembrane anti-sigma factor; hypothetical protein complement(3025847..3026101) Nitrosococcus halophilus Nc4 8917953 YP_003528399.1 CDS Nhal_2952 NC_013960.1 3026095 3026745 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: pau:PA14_21550 RNA polymerase ECF-subfamily sigma-70 factor; sigma-70 family RNA polymerase sigma factor complement(3026095..3026745) Nitrosococcus halophilus Nc4 8917954 YP_003528400.1 CDS Nhal_2953 NC_013960.1 3026955 3027386 R PFAM: protein of unknown function DUF101; KEGG: sfu:Sfum_2728 protein of unknown function DUF101; hypothetical protein complement(3026955..3027386) Nitrosococcus halophilus Nc4 8917955 YP_003528401.1 CDS Nhal_2954 NC_013960.1 3027406 3028332 R PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: sfu:Sfum_2727 cobalamin synthesis protein, P47K; cobalamin synthesis protein P47K complement(3027406..3028332) Nitrosococcus halophilus Nc4 8917956 YP_003528402.1 CDS Nhal_2955 NC_013960.1 3028335 3029795 R PFAM: protein of unknown function UPF0027; KEGG: sfu:Sfum_2726 protein of unknown function UPF0027; hypothetical protein complement(3028335..3029795) Nitrosococcus halophilus Nc4 8917957 YP_003528403.1 CDS Nhal_2956 NC_013960.1 3029848 3030576 R PFAM: protein of unknown function DUF72; KEGG: nis:NIS_1306 hypothetical protein; hypothetical protein complement(3029848..3030576) Nitrosococcus halophilus Nc4 8917958 YP_003528404.1 CDS Nhal_2957 NC_013960.1 3030594 3033383 R KEGG: reu:Reut_A1753 chaperone heat-shock protein; chaperone heat-shock protein complement(3030594..3033383) Nitrosococcus halophilus Nc4 8917959 YP_003528405.1 CDS Nhal_2958 NC_013960.1 3033395 3035239 R KEGG: cti:RALTA_A1539 heat-shock chaperone HSP70/DnaK; heat-shock chaperone HSP70/DnaK complement(3033395..3035239) Nitrosococcus halophilus Nc4 8917960 YP_003528406.1 CDS Nhal_2959 NC_013960.1 3035236 3035793 R KEGG: bpy:Bphyt_2133 hypothetical protein; hypothetical protein complement(3035236..3035793) Nitrosococcus halophilus Nc4 8917961 YP_003528407.1 CDS Nhal_2960 NC_013960.1 3035910 3037064 D TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; tryptophan halogenase; FAD dependent oxidoreductase; Lycopene beta and epsilon cyclase; KEGG: noc:Noc_0982 geranylgeranyl reductase; geranylgeranyl reductase 3035910..3037064 Nitrosococcus halophilus Nc4 8917962 YP_003528408.1 CDS Nhal_2961 NC_013960.1 3037418 3038527 D TIGRFAM: transaldolase; PFAM: transaldolase; KEGG: nmu:Nmul_A1622 transaldolase; transaldolase 3037418..3038527 Nitrosococcus halophilus Nc4 8917963 YP_003528409.1 CDS Nhal_2962 NC_013960.1 3038593 3039588 D KEGG: noc:Noc_0983 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 3038593..3039588 Nitrosococcus halophilus Nc4 8917964 YP_003528410.1 CDS Nhal_2963 NC_013960.1 3039754 3040407 D KEGG: noc:Noc_0984 hypothetical protein; hypothetical protein 3039754..3040407 Nitrosococcus halophilus Nc4 8917965 YP_003528411.1 CDS Nhal_2964 NC_013960.1 3040457 3040642 R KEGG: asa:ASA_1478 hypothetical protein; hypothetical protein complement(3040457..3040642) Nitrosococcus halophilus Nc4 8917966 YP_003528412.1 CDS Nhal_2965 NC_013960.1 3040639 3041184 R KEGG: noc:Noc_0985 protein-methionine-S-oxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: methionine sulfoxide reductase B; methionine-R-sulfoxide reductase complement(3040639..3041184) Nitrosococcus halophilus Nc4 8917967 YP_003528413.1 CDS Nhal_2966 NC_013960.1 3041466 3042047 D PFAM: hypothetical protein; KEGG: noc:Noc_0986 hypothetical protein; hypothetical protein 3041466..3042047 Nitrosococcus halophilus Nc4 8917968 YP_003528414.1 CDS Nhal_2967 NC_013960.1 3042111 3043145 D PFAM: AIR synthase related protein domain protein; AIR synthase related protein; KEGG: aeh:Mlg_2063 AIR synthase-like protein; AIR synthase-like protein domain-containing protein 3042111..3043145 Nitrosococcus halophilus Nc4 8917969 YP_003528415.1 CDS Nhal_2968 NC_013960.1 3043342 3046080 D KEGG: noc:Noc_0987 hypothetical protein; hypothetical protein 3043342..3046080 Nitrosococcus halophilus Nc4 8917970 YP_003528416.1 CDS Nhal_2969 NC_013960.1 3046067 3049546 D PFAM: UvrD/REP helicase; KEGG: noc:Noc_0988 UvrD/REP helicase; UvrD/REP helicase 3046067..3049546 Nitrosococcus halophilus Nc4 8917971 YP_003528417.1 CDS Nhal_2970 NC_013960.1 3049543 3049761 D KEGG: tgr:Tgr7_0553 hypothetical protein; hypothetical protein 3049543..3049761 Nitrosococcus halophilus Nc4 8917972 YP_003528418.1 CDS Nhal_2971 NC_013960.1 3049903 3050484 D PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: noc:Noc_0989 hypothetical protein; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 3049903..3050484 Nitrosococcus halophilus Nc4 8917973 YP_003528419.1 CDS Nhal_2972 NC_013960.1 3050590 3052068 R KEGG: noc:Noc_0990 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: pyruvate kinase barrel; pyruvate kinase alpha/beta; pyruvate kinase complement(3050590..3052068) Nitrosococcus halophilus Nc4 8917974 YP_003528420.1 CDS Nhal_2973 NC_013960.1 3052124 3053017 R PFAM: alpha/beta hydrolase fold; KEGG: noc:Noc_0991 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(3052124..3053017) Nitrosococcus halophilus Nc4 8917975 YP_003528421.1 CDS Nhal_2974 NC_013960.1 3053021 3054196 R KEGG: noc:Noc_0992 hypothetical protein; hypothetical protein complement(3053021..3054196) Nitrosococcus halophilus Nc4 8917976 YP_003528422.1 CDS Nhal_2975 NC_013960.1 3054219 3054767 R KEGG: noc:Noc_0993 hypothetical protein; hypothetical protein complement(3054219..3054767) Nitrosococcus halophilus Nc4 8917977 YP_003528423.1 CDS Nhal_2976 NC_013960.1 3054962 3055804 D PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: noc:Noc_0994 methylase involved in ubiquinone/menaquinone biosynthesis-like; type 11 methyltransferase 3054962..3055804 Nitrosococcus halophilus Nc4 8917978 YP_003528424.1 CDS Nhal_2977 NC_013960.1 3055869 3058061 R KEGG: noc:Noc_0995 helicase RecD/TraA; TIGRFAM: helicase, RecD/TraA family; SMART: ATPase AAA; DNA-binding protein; helicase, RecD/TraA family complement(3055869..3058061) Nitrosococcus halophilus Nc4 8917979 YP_003528425.1 CDS Nhal_2978 NC_013960.1 3058226 3059131 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_0581 ABC transporter ATPase; ABC transporter complement(3058226..3059131) Nitrosococcus halophilus Nc4 8917980 YP_003528426.1 CDS Nhal_2979 NC_013960.1 3059086 3059964 R TIGRFAM: phosphate ABC transporter inner membrane subunit PstA; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: noc:Noc_0582 phosphate ABC transporter permease; phosphate ABC transporter permease complement(3059086..3059964) Nitrosococcus halophilus Nc4 8917981 YP_003528427.1 CDS Nhal_2980 NC_013960.1 3059961 3060848 R TIGRFAM: phosphate ABC transporter inner membrane subunit PstC; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: noc:Noc_0583 phosphate ABC transporter permease; phosphate ABC transporter permease complement(3059961..3060848) Nitrosococcus halophilus Nc4 8917982 YP_003528428.1 CDS Nhal_2981 NC_013960.1 3060805 3061632 R TIGRFAM: phosphate binding protein; KEGG: noc:Noc_0584 extracellular solute-binding protein; phosphate binding protein complement(3060805..3061632) Nitrosococcus halophilus Nc4 8917983 YP_003528429.1 CDS Nhal_2982 NC_013960.1 3061650 3061979 R PFAM: ArsR family transcriptional regulator; SMART: ArsR family transcriptional regulator; KEGG: ppd:Ppro_1931 ArsR family transcriptional regulator; ArsR family transcriptional regulator complement(3061650..3061979) Nitrosococcus halophilus Nc4 8917984 YP_003528430.1 CDS Nhal_2983 NC_013960.1 3062141 3062887 R PFAM: endonuclease/exonuclease/phosphatase; KEGG: noc:Noc_0998 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase complement(3062141..3062887) Nitrosococcus halophilus Nc4 8917985 YP_003528431.1 CDS Nhal_2984 NC_013960.1 3062926 3063915 R TIGRFAM: hopanoid-associated sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; NmrA family protein; KEGG: noc:Noc_0999 NAD-dependent epimerase/dehydratase; hopanoid-associated sugar epimerase complement(3062926..3063915) Nitrosococcus halophilus Nc4 8917986 YP_003528432.1 CDS Nhal_2985 NC_013960.1 3063961 3064503 R KEGG: noc:Noc_1000 hypothetical protein; hypothetical protein complement(3063961..3064503) Nitrosococcus halophilus Nc4 8917987 YP_003528433.1 CDS Nhal_2986 NC_013960.1 3064810 3065262 D PFAM: Tellurite resistance TerB; KEGG: noc:Noc_1001 tellurite resistance TerB; Tellurite resistance TerB 3064810..3065262 Nitrosococcus halophilus Nc4 8917988 YP_003528434.1 CDS Nhal_2987 NC_013960.1 3065287 3065865 D PFAM: stress protein; KEGG: noc:Noc_1002 stress protein; stress protein 3065287..3065865 Nitrosococcus halophilus Nc4 8917989 YP_003528435.1 CDS Nhal_2988 NC_013960.1 3065928 3067046 D KEGG: noc:Noc_1003 hypothetical protein; hypothetical protein 3065928..3067046 Nitrosococcus halophilus Nc4 8917990 YP_003528436.1 CDS Nhal_2989 NC_013960.1 3067047 3067790 D KEGG: noc:Noc_1004 hypothetical protein; hypothetical protein 3067047..3067790 Nitrosococcus halophilus Nc4 8917991 YP_003528437.1 CDS Nhal_2990 NC_013960.1 3067787 3068911 D KEGG: noc:Noc_1005 hypothetical protein; hypothetical protein 3067787..3068911 Nitrosococcus halophilus Nc4 8917992 YP_003528438.1 CDS Nhal_2991 NC_013960.1 3068940 3069914 D KEGG: noc:Noc_1006 ATP/GTP-binding protein; ATP/GTP-binding protein 3068940..3069914 Nitrosococcus halophilus Nc4 8917993 YP_003528439.1 CDS Nhal_2992 NC_013960.1 3069970 3070992 D PFAM: protein of unknown function DUF475; integral membrane protein TerC; KEGG: noc:Noc_1007 hypothetical protein; hypothetical protein 3069970..3070992 Nitrosococcus halophilus Nc4 8917994 YP_003528440.1 CDS Nhal_2993 NC_013960.1 3071071 3071649 D PFAM: stress protein; KEGG: noc:Noc_1008 stress protein; stress protein 3071071..3071649 Nitrosococcus halophilus Nc4 8917995 YP_003528441.1 CDS Nhal_2994 NC_013960.1 3071830 3071991 R KEGG: net:Neut_2360 hypothetical protein; hypothetical protein complement(3071830..3071991) Nitrosococcus halophilus Nc4 8917996 YP_003528442.1 CDS Nhal_2995 NC_013960.1 3072113 3073480 D TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; Quinolinate phosphoribosyl transferase; KEGG: noc:Noc_1009 nicotinate phosphoribosyltransferase; nicotinate phosphoribosyltransferase 3072113..3073480 Nitrosococcus halophilus Nc4 8917997 YP_003528443.1 CDS Nhal_2996 NC_013960.1 3073487 3073906 R KEGG: hypothetical protein; hypothetical protein complement(3073487..3073906) Nitrosococcus halophilus Nc4 8917998 YP_003528444.1 CDS Nhal_2998 NC_013960.1 3074081 3074401 D KEGG: net:Neut_2000 hypothetical protein; hypothetical protein 3074081..3074401 Nitrosococcus halophilus Nc4 8918000 YP_003528445.1 CDS Nhal_2999 NC_013960.1 3074512 3074688 D hypothetical protein 3074512..3074688 Nitrosococcus halophilus Nc4 8918001 YP_003528446.1 CDS Nhal_3000 NC_013960.1 3074731 3075132 D KEGG: bur:Bcep18194_B2253 hypothetical protein; hypothetical protein 3074731..3075132 Nitrosococcus halophilus Nc4 8918002 YP_003528447.1 CDS Nhal_3001 NC_013960.1 3075129 3075830 D PFAM: RES domain protein; KEGG: tbd:Tbd_1493 hypothetical protein; RES domain-containing protein 3075129..3075830 Nitrosococcus halophilus Nc4 8918003 YP_003528448.1 CDS Nhal_3004 NC_013960.1 3076757 3078430 D PFAM: Resolvase domain; Recombinase; KEGG: bxe:Bxe_A2714 cassette chromosome recombinase resolvase, CcrB like; resolvase 3076757..3078430 Nitrosococcus halophilus Nc4 8918006 YP_003528449.1 CDS Nhal_3005 NC_013960.1 3078408 3079346 R KEGG: azo:azo3816 AraC family transcriptional regulator; AraC family transcriptional regulator complement(3078408..3079346) Nitrosococcus halophilus Nc4 8918007 YP_003528450.1 CDS Nhal_3006 NC_013960.1 3079550 3080509 D PFAM: homocysteine S-methyltransferase; KEGG: azo:azo3817 hypothetical protein; homocysteine S-methyltransferase 3079550..3080509 Nitrosococcus halophilus Nc4 8918008 YP_003528451.1 CDS Nhal_3007 NC_013960.1 3080914 3081414 R KEGG: maq:Maqu_0392 hypothetical protein; hypothetical protein complement(3080914..3081414) Nitrosococcus halophilus Nc4 8918009 YP_003528452.1 CDS Nhal_3008 NC_013960.1 3081539 3082117 D KEGG: noc:Noc_1094 hypothetical protein; hypothetical protein 3081539..3082117 Nitrosococcus halophilus Nc4 8918010 YP_003528453.1 CDS Nhal_3009 NC_013960.1 3082214 3082645 R PFAM: DNA polymerase III chi subunit HolC; KEGG: noc:Noc_0288 DNA polymerase III chi subunit, HolC; DNA polymerase III chi subunit HolC complement(3082214..3082645) Nitrosococcus halophilus Nc4 8918011 YP_003528454.1 CDS Nhal_3010 NC_013960.1 3082707 3084212 R PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: noc:Noc_0289 leucyl aminopeptidase; leucyl aminopeptidase complement(3082707..3084212) Nitrosococcus halophilus Nc4 8918012 YP_003528455.1 CDS Nhal_3011 NC_013960.1 3084366 3086765 D PFAM: protein of unknown function DUF323; peptidoglycan-binding protein; tyrosine protein kinase; serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: hch:HCH_04672 serine/threonine protein kinase; hypothetical protein 3084366..3086765 Nitrosococcus halophilus Nc4 8918013 YP_003528456.1 CDS Nhal_3012 NC_013960.1 3086974 3087198 D PFAM: protein of unknown function DUF433; KEGG: rpt:Rpal_3160 protein of unknown function DUF433; hypothetical protein 3086974..3087198 Nitrosococcus halophilus Nc4 8918014 YP_003528457.1 CDS Nhal_3013 NC_013960.1 3087227 3088399 R SMART: TIR protein; KEGG: dol:Dole_1625 hypothetical protein; TIR protein complement(3087227..3088399) Nitrosococcus halophilus Nc4 8918015 YP_003528458.1 CDS Nhal_3014 NC_013960.1 3088930 3090054 D PFAM: permease YjgP/YjgQ family protein; KEGG: noc:Noc_1910 permease YjgP/YjgQ; permease YjgP/YjgQ family protein 3088930..3090054 Nitrosococcus halophilus Nc4 8918016 YP_003528459.1 CDS Nhal_3015 NC_013960.1 3090051 3091115 D PFAM: permease YjgP/YjgQ family protein; KEGG: noc:Noc_1909 permease YjgP/YjgQ; permease YjgP/YjgQ family protein 3090051..3091115 Nitrosococcus halophilus Nc4 8918017 YP_003528460.1 CDS Nhal_3016 NC_013960.1 3091109 3091561 R PFAM: RDD domain containing protein; KEGG: noc:Noc_1908 hypothetical protein; RDD domain-containing protein complement(3091109..3091561) Nitrosococcus halophilus Nc4 8918018 YP_003528461.1 CDS Nhal_3017 NC_013960.1 3091609 3095511 D KEGG: noc:Noc_1907 phosphoribosylformylglycinamidine synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; phosphoribosylformylglycinamidine synthase 3091609..3095511 Nitrosococcus halophilus Nc4 8918019 YP_003528462.1 CDS Nhal_3018 NC_013960.1 3095520 3096068 R PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2; KEGG: noc:Noc_1906 Smr protein/MutS2-like; Smr protein/MutS2 complement(3095520..3096068) Nitrosococcus halophilus Nc4 8918020 YP_003528463.1 CDS Nhal_3019 NC_013960.1 3096241 3098247 D KEGG: noc:Noc_1901 membrane-bound proton-translocating pyrophosphatase; TIGRFAM: V-type H(+)-translocating pyrophosphatase; PFAM: inorganic H pyrophosphatase; V-type H(+)-translocating pyrophosphatase 3096241..3098247 Nitrosococcus halophilus Nc4 8918021 YP_003528464.1 CDS Nhal_3020 NC_013960.1 3099632 3099970 R KEGG: gur:Gura_1489 hypothetical protein; hypothetical protein complement(3099632..3099970) Nitrosococcus halophilus Nc4 8918023 YP_003528465.1 CDS Nhal_3021 NC_013960.1 3099936 3100232 R PFAM: protein of unknown function DUF497; KEGG: avn:Avin_31950 hypothetical protein; hypothetical protein complement(3099936..3100232) Nitrosococcus halophilus Nc4 8918024 YP_003528466.1 CDS Nhal_3022 NC_013960.1 3100494 3100943 D PFAM: protein of unknown function DUF29; KEGG: noc:Noc_0766 hypothetical protein; hypothetical protein 3100494..3100943 Nitrosococcus halophilus Nc4 8918025 YP_003528467.1 CDS Nhal_3023 NC_013960.1 3100985 3101377 D KEGG: xfn:XfasM23_1208 hypothetical protein; hypothetical protein 3100985..3101377 Nitrosococcus halophilus Nc4 8918026 YP_003528468.1 CDS Nhal_3024 NC_013960.1 3101428 3101640 D PFAM: protein of unknown function UPF0150; KEGG: tbd:Tbd_1973 hypothetical protein; hypothetical protein 3101428..3101640 Nitrosococcus halophilus Nc4 8918027 YP_003528469.1 CDS Nhal_3026 NC_013960.1 3102117 3104306 R KEGG: bpt:Bpet4498 hypothetical protein; hypothetical protein complement(3102117..3104306) Nitrosococcus halophilus Nc4 8918029 YP_003528470.1 CDS Nhal_3027 NC_013960.1 3104479 3105336 R KEGG: sml:Smlt3074 hypothetical protein; hypothetical protein complement(3104479..3105336) Nitrosococcus halophilus Nc4 8918030 YP_003528471.1 CDS Nhal_3029 NC_013960.1 3106964 3107401 D PFAM: protein of unknown function DUF29; KEGG: noc:Noc_0766 hypothetical protein; hypothetical protein 3106964..3107401 Nitrosococcus halophilus Nc4 8918032 YP_003528472.1 CDS Nhal_3030 NC_013960.1 3107528 3107854 R PFAM: HicB family protein; KEGG: glo:Glov_0059 HicB family protein; HicB family protein complement(3107528..3107854) Nitrosococcus halophilus Nc4 8918033 YP_003528473.1 CDS Nhal_3031 NC_013960.1 3107851 3108105 R KEGG: rfr:Rfer_0179 HicA protein; HicA protein complement(3107851..3108105) Nitrosococcus halophilus Nc4 8918034 YP_003528474.1 CDS Nhal_3033 NC_013960.1 3108572 3108955 R PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: noc:Noc_0496 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(3108572..3108955) Nitrosococcus halophilus Nc4 8918036 YP_003528475.1 CDS Nhal_3034 NC_013960.1 3109234 3110196 D hypothetical protein 3109234..3110196 Nitrosococcus halophilus Nc4 8918037 YP_003528476.1 CDS Nhal_3035 NC_013960.1 3110298 3112262 D KEGG: dds:Ddes_1605 molecular chaperone-like protein; Molecular chaperone-like protein 3110298..3112262 Nitrosococcus halophilus Nc4 8918038 YP_003528477.1 CDS Nhal_3036 NC_013960.1 3112319 3112519 R KEGG: noc:Noc_1614 hypothetical protein; hypothetical protein complement(3112319..3112519) Nitrosococcus halophilus Nc4 8918039 YP_003528478.1 CDS Nhal_3037 NC_013960.1 3112659 3113486 R PFAM: (2R)-phospho-3-sulfolactate synthase ComA; KEGG: hypothetical protein; (2R)-phospho-3-sulfolactate synthase ComA complement(3112659..3113486) Nitrosococcus halophilus Nc4 8918040 YP_003528479.1 CDS Nhal_3038 NC_013960.1 3113476 3114870 R PFAM: MmgE/PrpD family protein; KEGG: bph:Bphy_6460 MmgE/PrpD family protein; 2-methylcitrate dehydratase complement(3113476..3114870) Nitrosococcus halophilus Nc4 8918041 YP_003528480.1 CDS Nhal_3039 NC_013960.1 3115183 3115644 D PFAM: TspO/MBR family protein; KEGG: ret:RHE_PE00375 tryptophan rich sensory protein; TspO/MBR family protein 3115183..3115644 Nitrosococcus halophilus Nc4 8918042 YP_003528481.1 CDS Nhal_3040 NC_013960.1 3115696 3115980 R KEGG: cti:RALTA_A2185 hypothetical protein; hypothetical protein complement(3115696..3115980) Nitrosococcus halophilus Nc4 8918043 YP_003528482.1 CDS Nhal_3041 NC_013960.1 3116488 3117630 D TIGRFAM: cytochrome C oxidase subunit II; PFAM: cytochrome C oxidase subunit II; KEGG: noc:Noc_1767 cytochrome C oxidase subunit II; cytochrome C oxidase subunit II 3116488..3117630 Nitrosococcus halophilus Nc4 8918044 YP_003528483.1 CDS Nhal_3042 NC_013960.1 3117627 3120188 D KEGG: noc:Noc_1766 cytochrome C oxidase; TIGRFAM: cytochrome C oxidase subunit I; PFAM: cytochrome C oxidase subunit I; cytochrome C oxidase subunit I 3117627..3120188 Nitrosococcus halophilus Nc4 8918045 YP_003528484.1 CDS Nhal_3043 NC_013960.1 3120199 3120576 D KEGG: noc:Noc_1765 transmembrane prediction; hypothetical protein 3120199..3120576 Nitrosococcus halophilus Nc4 8918046 YP_003528485.1 CDS Nhal_3044 NC_013960.1 3120576 3120668 D hypothetical protein 3120576..3120668 Nitrosococcus halophilus Nc4 8918047 YP_003528486.1 CDS Nhal_3045 NC_013960.1 3120665 3121774 D KEGG: noc:Noc_1764 cytochrome C, class I; cytochrome C, class I 3120665..3121774 Nitrosococcus halophilus Nc4 8918048 YP_003528487.1 CDS Nhal_3046 NC_013960.1 3121825 3123159 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: noc:Noc_1355 signal transduction histidine kinase; ATP-binding region ATPase domain-containing protein complement(3121825..3123159) Nitrosococcus halophilus Nc4 8918049 YP_003528488.1 CDS Nhal_3047 NC_013960.1 3123156 3123815 R PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: noc:Noc_1354 two comoponent transcriptional regulator; response regulator receiver complement(3123156..3123815) Nitrosococcus halophilus Nc4 8918050 YP_003528489.1 CDS Nhal_3048 NC_013960.1 3123815 3124147 R PFAM: propeptide PepSY amd peptidase M4; KEGG: noc:Noc_1353 peptidase; propeptide PepSY amd peptidase M4 complement(3123815..3124147) Nitrosococcus halophilus Nc4 8918051 YP_003528490.1 CDS Nhal_3049 NC_013960.1 3124119 3124430 R PFAM: propeptide PepSY amd peptidase M4; KEGG: noc:Noc_1351 peptidase; propeptide PepSY amd peptidase M4 complement(3124119..3124430) Nitrosococcus halophilus Nc4 8918052 YP_003528491.1 CDS Nhal_3050 NC_013960.1 3124653 3124943 D KEGG: noc:Noc_1349 hypothetical protein; hypothetical protein 3124653..3124943 Nitrosococcus halophilus Nc4 8918053 YP_003528492.1 CDS Nhal_3051 NC_013960.1 3125029 3125766 D TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: noc:Noc_1348 6-phosphogluconolactonase; 6-phosphogluconolactonase 3125029..3125766 Nitrosococcus halophilus Nc4 8918054 YP_003528493.1 CDS Nhal_3052 NC_013960.1 3125763 3126770 D KEGG: noc:Noc_1347 glucokinase; TIGRFAM: glucokinase; PFAM: glucokinase; glucokinase 3125763..3126770 Nitrosococcus halophilus Nc4 8918055 YP_003528494.1 CDS Nhal_3053 NC_013960.1 3126767 3127186 D PFAM: ApaG domain protein; KEGG: noc:Noc_1346 ApaG; ApaG domain-containing protein 3126767..3127186 Nitrosococcus halophilus Nc4 8918056 YP_003528495.1 CDS Nhal_3054 NC_013960.1 3127293 3128129 D TIGRFAM: bis(5'-nucleosyl)-tetraphosphatase (symmetrical); PFAM: metallophosphoesterase; KEGG: noc:Noc_1345 diadenosine tetraphosphatase; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 3127293..3128129 Nitrosococcus halophilus Nc4 8918057 YP_003528496.1 CDS Nhal_3055 NC_013960.1 3128163 3129812 D PFAM: extracellular solute-binding protein family 5; KEGG: noc:Noc_1344 extracellular solute-binding protein; family 5 extracellular solute-binding protein 3128163..3129812 Nitrosococcus halophilus Nc4 8918058 YP_003528497.1 CDS Nhal_3056 NC_013960.1 3129809 3130570 R KEGG: pol:Bpro_1844 hypothetical protein; hypothetical protein complement(3129809..3130570) Nitrosococcus halophilus Nc4 8918059 YP_003528498.1 CDS Nhal_3057 NC_013960.1 3130573 3131310 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: msl:Msil_2480 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3130573..3131310) Nitrosococcus halophilus Nc4 8918060 YP_003528499.1 CDS Nhal_3058 NC_013960.1 3131314 3131895 R PFAM: carbonic anhydrase; KEGG: noc:Noc_1341 carbonic anhydrase; carbonic anhydrase complement(3131314..3131895) Nitrosococcus halophilus Nc4 8918061 YP_003528500.1 CDS Nhal_3059 NC_013960.1 3131918 3132568 R PFAM: protein of unknown function DUF938; methyltransferase type 12; KEGG: bid:Bind_1301 hypothetical protein; hypothetical protein complement(3131918..3132568) Nitrosococcus halophilus Nc4 8918062 YP_003528501.1 CDS Nhal_3060 NC_013960.1 3132819 3134414 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: mca:MCA0913 sigma-54 dependent transcriptional regulator; Fis family transcriptional regulator 3132819..3134414 Nitrosococcus halophilus Nc4 8918063 YP_003528502.1 CDS Nhal_3061 NC_013960.1 3134426 3135322 R PFAM: DNA/RNA non-specific endonuclease; SMART: DNA/RNA non-specific endonuclease; KEGG: noc:Noc_1834 DNA/RNA non-specific endonuclease; DNA/RNA non-specific endonuclease complement(3134426..3135322) Nitrosococcus halophilus Nc4 8918064 YP_003528503.1 CDS Nhal_3063 NC_013960.1 3135756 3136535 R KEGG: tau:Tola_1062 hypothetical protein; hypothetical protein complement(3135756..3136535) Nitrosococcus halophilus Nc4 8918066 YP_003528504.1 CDS Nhal_3064 NC_013960.1 3136555 3136746 R KEGG: tau:Tola_1063 hypothetical protein; hypothetical protein complement(3136555..3136746) Nitrosococcus halophilus Nc4 8918067 YP_003528505.1 CDS Nhal_3066 NC_013960.1 3137345 3137629 D TIGRFAM: addiction module antidote protein; KEGG: rso:RS05545 hypothetical protein; addiction module antidote protein 3137345..3137629 Nitrosococcus halophilus Nc4 8918069 YP_003528506.1 CDS Nhal_3067 NC_013960.1 3137708 3138790 R KEGG: noc:Noc_1833 hypothetical protein; hypothetical protein complement(3137708..3138790) Nitrosococcus halophilus Nc4 8918070 YP_003528507.1 CDS Nhal_3068 NC_013960.1 3138876 3139484 R PFAM: protein of unknown function DUF1326; KEGG: msl:Msil_2659 protein of unknown function DUF1326; hypothetical protein complement(3138876..3139484) Nitrosococcus halophilus Nc4 8918071 YP_003528508.1 CDS Nhal_3069 NC_013960.1 3139743 3140807 D KEGG: bcm:Bcenmc03_3151 hypothetical protein; hypothetical protein 3139743..3140807 Nitrosococcus halophilus Nc4 8918072 YP_003528509.1 CDS Nhal_3070 NC_013960.1 3140834 3141433 D PFAM: LemA family protein; KEGG: noc:Noc_1832 hypothetical protein; LemA family protein 3140834..3141433 Nitrosococcus halophilus Nc4 8918073 YP_003528510.1 CDS Nhal_3071 NC_013960.1 3141460 3143463 D PFAM: peptidase M48 Ste24p; KEGG: noc:Noc_1831 peptidase M48, Ste24p; peptidase M48 Ste24p 3141460..3143463 Nitrosococcus halophilus Nc4 8918074 YP_003528511.1 CDS Nhal_3072 NC_013960.1 3143494 3144465 R PFAM: CHAD domain containing protein; KEGG: mxa:MXAN_0861 CHAD domain-containing protein; CHAD domain-containing protein complement(3143494..3144465) Nitrosococcus halophilus Nc4 8918075 YP_003528512.1 CDS Nhal_3073 NC_013960.1 3144533 3145054 R PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; KEGG: noc:Noc_1830 Appr-1-p processing; Appr-1-p processing domain-containing protein complement(3144533..3145054) Nitrosococcus halophilus Nc4 8918076 YP_003528513.1 CDS Nhal_3074 NC_013960.1 3145448 3145978 D KEGG: noc:Noc_1829 hypothetical protein; hypothetical protein 3145448..3145978 Nitrosococcus halophilus Nc4 8918077 YP_003528514.1 CDS Nhal_3075 NC_013960.1 3146017 3146721 R KEGG: mca:MCA0647 ion transport family protein; hypothetical protein complement(3146017..3146721) Nitrosococcus halophilus Nc4 8918078 YP_003528515.1 CDS Nhal_3076 NC_013960.1 3146859 3148010 D PFAM: integrase family protein; KEGG: cti:pRALTA_0632 phage integrase; integrase family protein 3146859..3148010 Nitrosococcus halophilus Nc4 8918079 YP_003528516.1 CDS Nhal_3077 NC_013960.1 3148229 3150187 R SMART: ATPase AAA; KEGG: noc:Noc_1621 ATPase; ATPase AAA complement(3148229..3150187) Nitrosococcus halophilus Nc4 8918080 YP_003528517.1 CDS Nhal_3078 NC_013960.1 3150370 3150696 D PFAM: cupin; KEGG: sat:SYN_01067 phosphoribosylaminoimidazole carboxylase ATPase; cupin 3150370..3150696 Nitrosococcus halophilus Nc4 8918081 YP_003528518.1 CDS Nhal_3079 NC_013960.1 3150693 3151979 D KEGG: noc:Noc_1926 hypothetical protein; hypothetical protein 3150693..3151979 Nitrosococcus halophilus Nc4 8918082 YP_003528519.1 CDS Nhal_3080 NC_013960.1 3152021 3152746 D KEGG: bcj:BCAL1975 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase 3152021..3152746 Nitrosococcus halophilus Nc4 8918083 YP_003528520.1 CDS Nhal_3081 NC_013960.1 3152870 3155626 D PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: hha:Hhal_0052 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 3152870..3155626 Nitrosococcus halophilus Nc4 8918084 YP_003528521.1 CDS Nhal_3082 NC_013960.1 3155657 3156211 D PFAM: NADPH-dependent FMN reductase; KEGG: rfr:Rfer_3495 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 3155657..3156211 Nitrosococcus halophilus Nc4 8918085 YP_003528522.1 CDS Nhal_3083 NC_013960.1 3156226 3157212 R KEGG: noc:Noc_0277 streptogramin lyase; streptogramin lyase complement(3156226..3157212) Nitrosococcus halophilus Nc4 8918086 YP_003528523.1 CDS Nhal_3084 NC_013960.1 3157800 3158855 D KEGG: cvi:CV_2404 hypothetical protein; hypothetical protein 3157800..3158855 Nitrosococcus halophilus Nc4 8918087 YP_003528524.1 CDS Nhal_3085 NC_013960.1 3158978 3160093 D PFAM: metallophosphoesterase; KEGG: geo:Geob_2083 metallophosphoesterase; metallophosphoesterase 3158978..3160093 Nitrosococcus halophilus Nc4 8918088 YP_003528525.1 CDS Nhal_3086 NC_013960.1 3160109 3161923 D KEGG: noc:Noc_1644 excinuclease ABC subunit C; TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; excinuclease ABC C subunit domain protein; helix-hairpin-helix motif; UvrB/UvrC protein; SMART: excinuclease ABC C subunit domain protein; DNA-binding protein; excinuclease ABC subunit C 3160109..3161923 Nitrosococcus halophilus Nc4 8918089 YP_003528526.1 CDS Nhal_3087 NC_013960.1 3161992 3162579 D KEGG: noc:Noc_1643 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 3161992..3162579 Nitrosococcus halophilus Nc4 8918090 YP_003528527.1 CDS Nhal_3088 NC_013960.1 3163467 3164066 D hypothetical protein 3163467..3164066 Nitrosococcus halophilus Nc4 8918093 YP_003528528.1 CDS Nhal_3089 NC_013960.1 3164253 3164705 R hypothetical protein complement(3164253..3164705) Nitrosococcus halophilus Nc4 8918094 YP_003528529.1 CDS Nhal_3090 NC_013960.1 3164784 3164900 R hypothetical protein complement(3164784..3164900) Nitrosococcus halophilus Nc4 8918095 YP_003528530.1 CDS Nhal_3091 NC_013960.1 3165006 3166943 D TIGRFAM: oligopeptide transporter OPT family; oligopeptide transporters, OPT superfamily; PFAM: oligopeptide transporter OPT superfamily protein; KEGG: xfm:Xfasm12_1456 oligopeptide transporter; oligopeptide transporter OPT family 3165006..3166943 Nitrosococcus halophilus Nc4 8918096 YP_003528531.1 CDS Nhal_3092 NC_013960.1 3166943 3167728 D KEGG: mca:MCA1000 hypothetical protein; hypothetical protein 3166943..3167728 Nitrosococcus halophilus Nc4 8918097 YP_003528532.1 CDS Nhal_3093 NC_013960.1 3167764 3168249 D KEGG: noc:Noc_1653 hypothetical protein; hypothetical protein 3167764..3168249 Nitrosococcus halophilus Nc4 8918098 YP_003528533.1 CDS Nhal_3094 NC_013960.1 3168275 3169501 D TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: gur:Gura_2656 acetate kinase; acetate kinase 3168275..3169501 Nitrosococcus halophilus Nc4 8918099 YP_003528534.1 CDS Nhal_3095 NC_013960.1 3169544 3171679 D KEGG: mca:MCA0296 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; glycogen debranching protein GlgX 3169544..3171679 Nitrosococcus halophilus Nc4 8918100 YP_003528535.1 CDS Nhal_3096 NC_013960.1 3171694 3174222 D KEGG: net:Neut_2054 alpha-glucan phosphorylases; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; alpha-glucan phosphorylase 3171694..3174222 Nitrosococcus halophilus Nc4 8918101 YP_003528536.1 CDS Nhal_3097 NC_013960.1 3174266 3175267 D PFAM: conserved hypothetical protein; KEGG: noc:Noc_1651 hypothetical protein; hypothetical protein 3174266..3175267 Nitrosococcus halophilus Nc4 8918102 YP_003528537.1 CDS Nhal_3098 NC_013960.1 3175262 3176485 R PFAM: amino acid permease-associated region; KEGG: tgr:Tgr7_0624 hypothetical protein; amino acid permease-associated protein complement(3175262..3176485) Nitrosococcus halophilus Nc4 8918103 YP_003528538.1 CDS Nhal_3099 NC_013960.1 3176643 3177278 D KEGG: afr:AFE_2084 hypothetical protein; hypothetical protein 3176643..3177278 Nitrosococcus halophilus Nc4 8918104 YP_003528539.1 CDS Nhal_3100 NC_013960.1 3177282 3178517 D PFAM: glycosyl transferase group 1; KEGG: afr:AFE_2083 glycosyl transferase, group 1; group 1 glycosyl transferase 3177282..3178517 Nitrosococcus halophilus Nc4 8918105 YP_003528540.1 CDS Nhal_3101 NC_013960.1 3178525 3180393 D KEGG: noc:Noc_1681 alpha amylase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; malto-oligosyltrehalose trehalohydrolase 3178525..3180393 Nitrosococcus halophilus Nc4 8918106 YP_003528541.1 CDS Nhal_3102 NC_013960.1 3180422 3183334 D KEGG: noc:Noc_1680 (1,4)-alpha-D-glucan 1-alpha-D-glucosylmutase; TIGRFAM: malto-oligosyltrehalose synthase; SMART: alpha amylase catalytic sub domain; malto-oligosyltrehalose synthase 3180422..3183334 Nitrosococcus halophilus Nc4 8918107 YP_003528542.1 CDS Nhal_3103 NC_013960.1 3183485 3184024 D KEGG: noc:Noc_1679 hypothetical protein; hypothetical protein 3183485..3184024 Nitrosococcus halophilus Nc4 8918108 YP_003528543.1 CDS Nhal_3104 NC_013960.1 3184033 3184437 D KEGG: noc:Noc_1678 hypothetical protein; hypothetical protein 3184033..3184437 Nitrosococcus halophilus Nc4 8918109 YP_003528544.1 CDS Nhal_3105 NC_013960.1 3184764 3186095 D TIGRFAM: trigger factor; PFAM: trigger factor domain; trigger factor domain protein; peptidylprolyl isomerase FKBP-type; KEGG: noc:Noc_1677 trigger factor; trigger factor 3184764..3186095 Nitrosococcus halophilus Nc4 8918111 YP_003528545.1 CDS Nhal_3106 NC_013960.1 3186155 3186766 D KEGG: noc:Noc_1676 endopeptidase Clp; TIGRFAM: ATP-dependent Clp protease proteolytic subunit ClpP; PFAM: peptidase S14 ClpP; ATP-dependent Clp protease proteolytic subunit ClpP 3186155..3186766 Nitrosococcus halophilus Nc4 8918112 YP_003528546.1 CDS Nhal_3107 NC_013960.1 3186857 3188131 D KEGG: noc:Noc_1675 ATP-dependent protease ATP-binding subunit; TIGRFAM: ATP-dependent Clp protease ATP-binding subunit ClpX; PFAM: ATPase AAA; zinc finger C4 domain protein; ATPase AAA central domain protein; SMART: ATPase AAA; ATP-dependent Clp protease ATP-binding subunit ClpX 3186857..3188131 Nitrosococcus halophilus Nc4 8918113 YP_003528547.1 CDS Nhal_3108 NC_013960.1 3188339 3190783 D KEGG: noc:Noc_1674 peptidase S16, ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16; ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16; ATPase AAA; ATP-dependent protease La 3188339..3190783 Nitrosococcus halophilus Nc4 8918114 YP_003528548.1 CDS Nhal_3109 NC_013960.1 3190811 3191416 D PFAM: sporulation domain protein; KEGG: noc:Noc_1673 hypothetical protein; sporulation domain-containing protein 3190811..3191416 Nitrosococcus halophilus Nc4 8918115 YP_003528549.1 CDS Nhal_3110 NC_013960.1 3191417 3191923 D PFAM: colicin V production protein; KEGG: noc:Noc_1672 colicin V production protein; colicin V production protein 3191417..3191923 Nitrosococcus halophilus Nc4 8918116 YP_003528550.1 CDS Nhal_3111 NC_013960.1 3191952 3193463 D TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: noc:Noc_1671 amidophosphoribosyltransferase; amidophosphoribosyltransferase 3191952..3193463 Nitrosococcus halophilus Nc4 8918117 YP_003528551.1 CDS Nhal_3112 NC_013960.1 3193515 3194066 D PFAM: protein of unknown function DUF177; KEGG: noc:Noc_1670 hypothetical protein; hypothetical protein 3193515..3194066 Nitrosococcus halophilus Nc4 8918118 YP_003528552.1 CDS Nhal_3113 NC_013960.1 3194114 3194311 D TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: noc:Noc_1669 ribosomal protein S32; 50S ribosomal protein L32 3194114..3194311 Nitrosococcus halophilus Nc4 8918119 YP_003528553.1 CDS Nhal_3114 NC_013960.1 3194325 3195347 D TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: noc:Noc_1668 fatty acid synthesis PlsX protein; fatty acid/phospholipid synthesis protein PlsX 3194325..3195347 Nitrosococcus halophilus Nc4 8918120 YP_003528554.1 CDS Nhal_3115 NC_013960.1 3195344 3196312 D KEGG: noc:Noc_1667 3-oxoacyl-(acyl carrier protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-ACP synthase III 3195344..3196312 Nitrosococcus halophilus Nc4 8918121 YP_003528555.1 CDS Nhal_3116 NC_013960.1 3196320 3197261 D TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase; KEGG: noc:Noc_1666 malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase 3196320..3197261 Nitrosococcus halophilus Nc4 8918122 YP_003528556.1 CDS Nhal_3117 NC_013960.1 3197265 3198008 D TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: noc:Noc_1665 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-ACP reductase 3197265..3198008 Nitrosococcus halophilus Nc4 8918123 YP_003528557.1 CDS Nhal_3118 NC_013960.1 3198119 3198355 D TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: noc:Noc_1664 acyl carrier protein (ACP); acyl carrier protein 3198119..3198355 Nitrosococcus halophilus Nc4 8918124 YP_003528558.1 CDS Nhal_3119 NC_013960.1 3198498 3199694 D TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: beta-ketoacyl synthase; KEGG: noc:Noc_1663 beta-ketoacyl synthase; 3-oxoacyl-ACP synthase II 3198498..3199694 Nitrosococcus halophilus Nc4 8918125 YP_003528559.1 CDS Nhal_3120 NC_013960.1 3199728 3200549 D TIGRFAM: aminodeoxychorismate lyase; PFAM: aminotransferase class IV; KEGG: noc:Noc_1662 aminotransferase, class IV; aminodeoxychorismate lyase 3199728..3200549 Nitrosococcus halophilus Nc4 8918126 YP_003528560.1 CDS Nhal_3121 NC_013960.1 3200574 3201584 D PFAM: aminodeoxychorismate lyase; KEGG: noc:Noc_1661 aminodeoxychorismate lyase; aminodeoxychorismate lyase 3200574..3201584 Nitrosococcus halophilus Nc4 8918127 YP_003528561.1 CDS Nhal_3122 NC_013960.1 3201591 3202232 D KEGG: noc:Noc_1660 thymidylate kinase; TIGRFAM: thymidylate kinase; PFAM: thymidylate kinase; thymidylate kinase 3201591..3202232 Nitrosococcus halophilus Nc4 8918128 YP_003528562.1 CDS Nhal_3123 NC_013960.1 3202270 3203238 D PFAM: DNA polymerase III subunit delta; KEGG: noc:Noc_1659 DNA polymerase III subunit delta'; DNA-directed DNA polymerase 3202270..3203238 Nitrosococcus halophilus Nc4 8918129 YP_003528563.1 CDS Nhal_3124 NC_013960.1 3203225 3203593 D PFAM: type IV pilus assembly PilZ; KEGG: noc:Noc_1658 type IV pilus assembly PilZ; type IV pilus assembly PilZ 3203225..3203593 Nitrosococcus halophilus Nc4 8918130 YP_003528564.1 CDS Nhal_3125 NC_013960.1 3203686 3204468 D TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: noc:Noc_1657 TatD-related deoxyribonuclease; hydrolase, TatD family 3203686..3204468 Nitrosococcus halophilus Nc4 8918131 YP_003528565.1 CDS Nhal_3126 NC_013960.1 3204491 3204661 D hypothetical protein 3204491..3204661 Nitrosococcus halophilus Nc4 8918132 YP_003528566.1 CDS Nhal_3127 NC_013960.1 3204663 3205811 R PFAM: aminotransferase class V; KEGG: noc:Noc_1656 aminotransferase, class V; class V aminotransferase complement(3204663..3205811) Nitrosococcus halophilus Nc4 8918133 YP_003528567.1 CDS Nhal_3128 NC_013960.1 3205837 3206253 R PFAM: protein of unknown function DUF29; KEGG: msl:Msil_2916 protein of unknown function DUF29; hypothetical protein complement(3205837..3206253) Nitrosococcus halophilus Nc4 8918134 YP_003528568.1 CDS Nhal_3129 NC_013960.1 3206323 3207204 R KEGG: noc:Noc_1655 hypothetical protein; hypothetical protein complement(3206323..3207204) Nitrosococcus halophilus Nc4 8918135 YP_003528569.1 CDS Nhal_3130 NC_013960.1 3207368 3207889 D PFAM: AIG2 family protein; KEGG: hypothetical protein; AIG2 family protein 3207368..3207889 Nitrosococcus halophilus Nc4 8918136 YP_003528570.1 CDS Nhal_3131 NC_013960.1 3207886 3209292 D TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; KEGG: noc:Noc_1627 fumarate hydratase; fumarate hydratase, class II 3207886..3209292 Nitrosococcus halophilus Nc4 8918137 YP_003528571.1 CDS Nhal_3132 NC_013960.1 3209716 3211359 D PFAM: sulfate transporter; xanthine/uracil/vitamin C permease; KEGG: noc:Noc_1626 sulfate transporter; sulfate transporter 3209716..3211359 Nitrosococcus halophilus Nc4 8918138 YP_003528572.1 CDS Nhal_3133 NC_013960.1 3211616 3212377 D KEGG: noc:Noc_1625 lipoprotein; lipoprotein 3211616..3212377 Nitrosococcus halophilus Nc4 8918139 YP_003528573.1 CDS Nhal_3134 NC_013960.1 3212559 3214046 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: noc:Noc_1624 signal transduction histidine kinase; ATP-binding region ATPase domain-containing protein 3212559..3214046 Nitrosococcus halophilus Nc4 8918140 YP_003528574.1 CDS Nhal_3135 NC_013960.1 3213997 3215409 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: noc:Noc_1623 two component, sigma-54 specific, fis family transcriptional regulator; Fis family transcriptional regulator 3213997..3215409 Nitrosococcus halophilus Nc4 8918141 YP_003528575.1 CDS Nhal_3136 NC_013960.1 3215459 3216598 D PFAM: DAHP synthetase I/KDSA; KEGG: noc:Noc_1622 DAHP synthetase I/KdsA; DAHP synthetase I/KDSA 3215459..3216598 Nitrosococcus halophilus Nc4 8918142 YP_003528576.1 CDS Nhal_3137 NC_013960.1 3216607 3218610 D KEGG: noc:Noc_1901 membrane-bound proton-translocating pyrophosphatase; TIGRFAM: V-type H(+)-translocating pyrophosphatase; PFAM: inorganic H pyrophosphatase; V-type H(+)-translocating pyrophosphatase 3216607..3218610 Nitrosococcus halophilus Nc4 8918143 YP_003528577.1 CDS Nhal_3138 NC_013960.1 3218607 3219392 R KEGG: net:Neut_1863 hypothetical protein; hypothetical protein complement(3218607..3219392) Nitrosococcus halophilus Nc4 8918144 YP_003528578.1 CDS Nhal_3139 NC_013960.1 3219815 3221134 D KEGG: noc:Noc_2899 hypothetical protein; hypothetical protein 3219815..3221134 Nitrosococcus halophilus Nc4 8918145 YP_003528579.1 CDS Nhal_3140 NC_013960.1 3221247 3221825 D PFAM: electron transporter SCO1/SenC; KEGG: noc:Noc_2900 electron transporter SCO1/SenC; electron transporter SCO1/SenC 3221247..3221825 Nitrosococcus halophilus Nc4 8918146 YP_003528580.1 CDS Nhal_3141 NC_013960.1 3221818 3222447 D KEGG: noc:Noc_2901 hypothetical protein; hypothetical protein 3221818..3222447 Nitrosococcus halophilus Nc4 8918147 YP_003528581.1 CDS Nhal_3142 NC_013960.1 3222643 3226119 D KEGG: noc:Noc_1642 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: TRCF domain protein; transcription factor CarD; helicase; DEAD/DEAH box helicase; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase; transcription-repair coupling factor 3222643..3226119 Nitrosococcus halophilus Nc4 8918148 YP_003528582.1 CDS Nhal_3143 NC_013960.1 3226157 3226558 D KEGG: noc:Noc_1641 hypothetical protein; hypothetical protein 3226157..3226558 Nitrosococcus halophilus Nc4 8918149 YP_003528583.1 CDS Nhal_3144 NC_013960.1 3226594 3226878 R PFAM: protein of unknown function DUF156; KEGG: psa:PST_2529 hypothetical protein; hypothetical protein complement(3226594..3226878) Nitrosococcus halophilus Nc4 8918150 YP_003528584.1 CDS Nhal_3145 NC_013960.1 3227304 3227729 D PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: mpo:Mpop_4146 protein of unknown function DUF395 YeeE/YedE; hypothetical protein 3227304..3227729 Nitrosococcus halophilus Nc4 8918151 YP_003528585.1 CDS Nhal_3146 NC_013960.1 3227731 3228168 D PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: azc:AZC_2083 YeeE/YedE family protein; hypothetical protein 3227731..3228168 Nitrosococcus halophilus Nc4 8918152 YP_003528586.1 CDS Nhal_3147 NC_013960.1 3228179 3228310 R hypothetical protein complement(3228179..3228310) Nitrosococcus halophilus Nc4 8918153 YP_003528587.1 CDS Nhal_3148 NC_013960.1 3228337 3228657 R KEGG: noc:Noc_1383 MerR family transcriptional regulator; MerR family transcriptional regulator complement(3228337..3228657) Nitrosococcus halophilus Nc4 8918154 YP_003528588.1 CDS Nhal_3149 NC_013960.1 3228661 3229608 R PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: aeh:Mlg_2130 heat shock protein DnaJ domain-containing protein; chaperone DnaJ domain-containing protein complement(3228661..3229608) Nitrosococcus halophilus Nc4 8918155 YP_003528589.1 CDS Nhal_3150 NC_013960.1 3229611 3230291 R PFAM: TrkA-N domain protein; KEGG: noc:Noc_1640 K+ transporters NAD-binding component, TrkA-N; TrkA-N domain-containing protein complement(3229611..3230291) Nitrosococcus halophilus Nc4 8918156 YP_003528590.1 CDS Nhal_3151 NC_013960.1 3230342 3231829 R PFAM: cation transporter; KEGG: noc:Noc_1639 cation transporter; cation transporter complement(3230342..3231829) Nitrosococcus halophilus Nc4 8918157 YP_003528591.1 CDS Nhal_3152 NC_013960.1 3231897 3232430 R KEGG: noc:Noc_1638 hypothetical protein; hypothetical protein complement(3231897..3232430) Nitrosococcus halophilus Nc4 8918158 YP_003528592.1 CDS Nhal_3153 NC_013960.1 3232788 3234590 R KEGG: nmu:Nmul_A1899 multicopper oxidase type 1; multicopper oxidase type 1 complement(3232788..3234590) Nitrosococcus halophilus Nc4 8918159 YP_003528593.1 CDS Nhal_3154 NC_013960.1 3234824 3235114 D PFAM: protein of unknown function UPF0044; KEGG: noc:Noc_1637 hypothetical protein; hypothetical protein 3234824..3235114 Nitrosococcus halophilus Nc4 8918160 YP_003528594.1 CDS Nhal_3155 NC_013960.1 3235140 3236510 R TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; protein of unknown function UPF0074; KEGG: noc:Noc_1636 ribonuclease BN; ribonuclease BN complement(3235140..3236510) Nitrosococcus halophilus Nc4 8918161 YP_003528595.1 CDS Nhal_3156 NC_013960.1 3236528 3237298 R PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: noc:Noc_1635 hypothetical protein; hypothetical protein complement(3236528..3237298) Nitrosococcus halophilus Nc4 8918162 YP_003528596.1 CDS Nhal_3157 NC_013960.1 3237291 3238652 R PFAM: protein of unknown function DUF107; KEGG: noc:Noc_1634 hypothetical protein; hypothetical protein complement(3237291..3238652) Nitrosococcus halophilus Nc4 8918163 YP_003528597.1 CDS Nhal_3158 NC_013960.1 3238738 3238968 D TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: noc:Noc_1633 bifunctional sulfur carrier protein/thiazole synthase protein; thiamine biosynthesis protein ThiS 3238738..3238968 Nitrosococcus halophilus Nc4 8918164 YP_003528598.1 CDS Nhal_3159 NC_013960.1 3239014 3239802 D PFAM: thiazole biosynthesis protein; KEGG: noc:Noc_1633 bifunctional sulfur carrier protein/thiazole synthase protein; thiazole biosynthesis protein 3239014..3239802 Nitrosococcus halophilus Nc4 8918165 YP_003528599.1 CDS Nhal_3160 NC_013960.1 3239816 3240055 R hypothetical protein complement(3239816..3240055) Nitrosococcus halophilus Nc4 8918166 YP_003528600.1 CDS Nhal_3161 NC_013960.1 3240205 3241065 D PFAM: beta-lactamase; KEGG: pap:PSPA7_2239 hypothetical protein; beta-lactamase 3240205..3241065 Nitrosococcus halophilus Nc4 8918167 YP_003528601.1 CDS Nhal_3162 NC_013960.1 3241123 3242667 R PFAM: sigma-54 factor interaction domain-containing protein; KEGG: dat:HRM2_31920 sigma-54 dependent transcriptional regulator; sigma-54 factor interaction domain-containing protein complement(3241123..3242667) Nitrosococcus halophilus Nc4 8918168 YP_003528602.1 CDS Nhal_3163 NC_013960.1 3242711 3244042 R KEGG: rfr:Rfer_1264 O-antigen polymerase; hypothetical protein complement(3242711..3244042) Nitrosococcus halophilus Nc4 8918169 YP_003528603.1 CDS Nhal_3164 NC_013960.1 3244032 3244691 R PFAM: PspA/IM30 family protein; KEGG: hypothetical protein; PspA/IM30 family protein complement(3244032..3244691) Nitrosococcus halophilus Nc4 8918170 YP_003528604.1 CDS Nhal_3165 NC_013960.1 3244932 3245120 D hypothetical protein 3244932..3245120 Nitrosococcus halophilus Nc4 8918171 YP_003528605.1 CDS Nhal_3166 NC_013960.1 3245136 3245522 D KEGG: noc:Noc_1628 hypothetical protein; hypothetical protein 3245136..3245522 Nitrosococcus halophilus Nc4 8918172 YP_003528606.1 CDS Nhal_3167 NC_013960.1 3245574 3245804 R hypothetical protein complement(3245574..3245804) Nitrosococcus halophilus Nc4 8918173 YP_003528607.1 CDS Nhal_3168 NC_013960.1 3245940 3247130 R KEGG: mxa:MXAN_6767 hypothetical protein; hypothetical protein complement(3245940..3247130) Nitrosococcus halophilus Nc4 8918174 YP_003528608.1 CDS Nhal_3169 NC_013960.1 3247720 3250566 D KEGG: noc:Noc_1609 multisensor diguanylate cyclase/phophodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; GAF domain protein; hypothetical protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein; diguanylate cyclase 3247720..3250566 Nitrosococcus halophilus Nc4 8918175 YP_003528609.1 CDS Nhal_3170 NC_013960.1 3250547 3251896 D TIGRFAM: glutathione-disulfide reductase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: noc:Noc_1608 glutathione reductase; glutathione-disulfide reductase 3250547..3251896 Nitrosococcus halophilus Nc4 8918176 YP_003528610.1 CDS Nhal_3171 NC_013960.1 3251975 3252295 D KEGG: aeh:Mlg_0393 hypothetical protein; hypothetical protein 3251975..3252295 Nitrosococcus halophilus Nc4 8918177 YP_003528611.1 CDS Nhal_3172 NC_013960.1 3252361 3252870 R KEGG: noc:Noc_1607 sulfate transporter/antisigma-factor antagonist STAS; sulfate transporter/antisigma-factor antagonist STAS complement(3252361..3252870) Nitrosococcus halophilus Nc4 8918178 YP_003528612.1 CDS Nhal_3173 NC_013960.1 3253053 3254621 D KEGG: noc:Noc_1606 glutamate--cysteine ligase, monofunctional; TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase; glutamate/cysteine ligase 3253053..3254621 Nitrosococcus halophilus Nc4 8918179 YP_003528613.1 CDS Nhal_3174 NC_013960.1 3254618 3254818 R hypothetical protein complement(3254618..3254818) Nitrosococcus halophilus Nc4 8918180 YP_003528614.1 CDS Nhal_3175 NC_013960.1 3254872 3255789 R PFAM: ADP-ribosylation/crystallin J1; KEGG: hypothetical protein; poly(ADP-ribose) glycohydrolase complement(3254872..3255789) Nitrosococcus halophilus Nc4 8918181 YP_003528615.1 CDS Nhal_3176 NC_013960.1 3255829 3256305 R PFAM: PEBP family protein; KEGG: noc:Noc_1605 hypothetical protein; PEBP family protein complement(3255829..3256305) Nitrosococcus halophilus Nc4 8918182 YP_003528616.1 CDS Nhal_3177 NC_013960.1 3256840 3261495 D PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase subunit alpha domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: noc:Noc_1604 glutamate synthase (ferredoxin); glutamate synthase (ferredoxin) 3256840..3261495 Nitrosococcus halophilus Nc4 8918183 YP_003528617.1 CDS Nhal_3178 NC_013960.1 3261495 3262937 D TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: noc:Noc_1603 glutamate synthase subunit beta; glutamate synthase, NADH/NADPH, small subunit 3261495..3262937 Nitrosococcus halophilus Nc4 8918184 YP_003528618.1 CDS Nhal_3179 NC_013960.1 3263142 3263471 D KEGG: noc:Noc_1602 hypothetical protein; hypothetical protein 3263142..3263471 Nitrosococcus halophilus Nc4 8918185 YP_003528619.1 CDS Nhal_3180 NC_013960.1 3263642 3264445 D PFAM: aldo/keto reductase; KEGG: mes:Meso_4023 aldo/keto reductase; aldo/keto reductase 3263642..3264445 Nitrosococcus halophilus Nc4 8918186 YP_003528620.1 CDS Nhal_3182 NC_013960.1 3265461 3269402 D TIGRFAM: beta-phosphoglucomutase family hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; Haloacid dehalogenase domain protein hydrolase; trehalose-phosphatase; KEGG: noc:Noc_1775 beta-phosphoglucomutase hydrolase; beta-phosphoglucomutase family hydrolase 3265461..3269402 Nitrosococcus halophilus Nc4 8918188 YP_003528621.1 CDS Nhal_3183 NC_013960.1 3269399 3270694 D PFAM: aminotransferase class I and II; KEGG: aeh:Mlg_2554 aminotransferase; class I and II aminotransferase 3269399..3270694 Nitrosococcus halophilus Nc4 8918189 YP_003528622.1 CDS Nhal_3184 NC_013960.1 3270791 3271429 D KEGG: noc:Noc_1776 protein-methionine-S-oxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 3270791..3271429 Nitrosococcus halophilus Nc4 8918190 YP_003528623.1 CDS Nhal_3185 NC_013960.1 3271459 3273390 R PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: noc:Noc_1156 peptidase S9, prolyl oligopeptidase active site region; peptidase S9 prolyl oligopeptidase active site domain-containing protein complement(3271459..3273390) Nitrosococcus halophilus Nc4 8918191 YP_003528624.1 CDS Nhal_3186 NC_013960.1 3273432 3273857 R KEGG: mno:Mnod_0076 hypothetical protein; hypothetical protein complement(3273432..3273857) Nitrosococcus halophilus Nc4 8918192 YP_003528625.1 CDS Nhal_3187 NC_013960.1 3274041 3274754 R KEGG: noc:Noc_1155 hypothetical protein; hypothetical protein complement(3274041..3274754) Nitrosococcus halophilus Nc4 8918193 YP_003528626.1 CDS Nhal_3188 NC_013960.1 3274781 3275422 R PFAM: lipolytic protein G-D-S-L family; KEGG: noc:Noc_1154 lipolytic protein; G-D-S-L family lipolytic protein complement(3274781..3275422) Nitrosococcus halophilus Nc4 8918194 YP_003528627.1 CDS Nhal_3189 NC_013960.1 3275838 3276740 D PFAM: alpha/beta hydrolase fold; KEGG: noc:Noc_1153 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 3275838..3276740 Nitrosococcus halophilus Nc4 8918196 YP_003528628.1 CDS Nhal_3190 NC_013960.1 3276864 3278186 D PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: pat:Patl_2874 twin-arginine translocation pathway signal; Sulfite oxidase 3276864..3278186 Nitrosococcus halophilus Nc4 8918197 YP_003528629.1 CDS Nhal_3191 NC_013960.1 3278188 3278553 D KEGG: pat:Patl_2873 hypothetical protein; hypothetical protein 3278188..3278553 Nitrosococcus halophilus Nc4 8918198 YP_003528630.1 CDS Nhal_3192 NC_013960.1 3278572 3278991 R PFAM: protein of unknown function UPF0047; KEGG: noc:Noc_1152 hypothetical protein; hypothetical protein complement(3278572..3278991) Nitrosococcus halophilus Nc4 8918199 YP_003528631.1 CDS Nhal_3193 NC_013960.1 3279028 3280224 D KEGG: maq:Maqu_0812 hypothetical protein; hypothetical protein 3279028..3280224 Nitrosococcus halophilus Nc4 8918200 YP_003528632.1 CDS Nhal_3194 NC_013960.1 3280225 3281424 R KEGG: noc:Noc_1151 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aminotransferase class I and II; aminotransferase class V; O-succinylhomoserine sulfhydrylase complement(3280225..3281424) Nitrosococcus halophilus Nc4 8918201 YP_003528633.1 CDS Nhal_3195 NC_013960.1 3281475 3281723 D hypothetical protein 3281475..3281723 Nitrosococcus halophilus Nc4 8918202 YP_003528634.1 CDS Nhal_3196 NC_013960.1 3282017 3283231 R KEGG: noc:Noc_1150 hypothetical protein; hypothetical protein complement(3282017..3283231) Nitrosococcus halophilus Nc4 8918203 YP_003528635.1 CDS Nhal_3197 NC_013960.1 3283236 3283697 R KEGG: noc:Noc_1149 hypothetical protein; hypothetical protein complement(3283236..3283697) Nitrosococcus halophilus Nc4 8918204 YP_003528636.1 CDS Nhal_3198 NC_013960.1 3283767 3284546 R KEGG: noc:Noc_1148 hypothetical protein; hypothetical protein complement(3283767..3284546) Nitrosococcus halophilus Nc4 8918205 YP_003528637.1 CDS Nhal_3199 NC_013960.1 3284670 3284990 R hypothetical protein complement(3284670..3284990) Nitrosococcus halophilus Nc4 8918206 YP_003528638.1 CDS Nhal_3200 NC_013960.1 3285036 3285158 R hypothetical protein complement(3285036..3285158) Nitrosococcus halophilus Nc4 8918207 YP_003528639.1 CDS Nhal_3201 NC_013960.1 3285699 3286055 R PFAM: MerR family transcriptional regulator; SMART: MerR family transcriptional regulator; KEGG: noc:Noc_1147 MerR family transcriptional regulator; MerR family transcriptional regulator complement(3285699..3286055) Nitrosococcus halophilus Nc4 8918209 YP_003528640.1 CDS Nhal_3202 NC_013960.1 3286033 3286335 R KEGG: noc:Noc_1146 integration host factor subunit alpha; TIGRFAM: integration host factor, subunit alpha; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; integration host factor subunit alpha complement(3286033..3286335) Nitrosococcus halophilus Nc4 8918210 YP_003528641.1 CDS Nhal_3203 NC_013960.1 3286339 3288717 R TIGRFAM: phenylalanyl-tRNA synthetase subunit beta; KEGG: noc:Noc_1145 phenylalanyl-tRNA synthetase subunit beta; phenylalanyl-tRNA synthetase subunit beta complement(3286339..3288717) Nitrosococcus halophilus Nc4 8918211 YP_003528642.1 CDS Nhal_3204 NC_013960.1 3288741 3289760 R KEGG: noc:Noc_1144 phenylalanyl-tRNA synthetase, alpha subunit; TIGRFAM: phenylalanyl-tRNA synthetase, subunit alpha; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; phenylalanyl-tRNA synthetase subunit alpha complement(3288741..3289760) Nitrosococcus halophilus Nc4 8918212 YP_003528643.1 CDS Nhal_3205 NC_013960.1 3289896 3290255 R TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; KEGG: noc:Noc_1143 50S ribosomal protein L20; 50S ribosomal protein L20 complement(3289896..3290255) Nitrosococcus halophilus Nc4 8918213 YP_003528644.1 CDS Nhal_3206 NC_013960.1 3290268 3290465 R TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: noc:Noc_1142 50S ribosomal protein L35; 50S ribosomal protein L35 complement(3290268..3290465) Nitrosococcus halophilus Nc4 8918214 YP_003528645.1 CDS Nhal_3207 NC_013960.1 3290541 3291038 R TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: noc:Noc_1141 initiation factor 3; translation initiation factor IF-3 complement(3290541..3291038) Nitrosococcus halophilus Nc4 8918215 YP_003528646.1 CDS Nhal_3208 NC_013960.1 3291060 3292994 R TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); TGS domain protein; anticodon-binding domain protein; threonyl/alanyl tRNA synthetase SAD; KEGG: noc:Noc_1140 threonyl-tRNA synthetase, class IIA; threonyl-tRNA synthetase complement(3291060..3292994) Nitrosococcus halophilus Nc4 8918216 YP_003528647.1 CDS Nhal_3209 NC_013960.1 3293290 3295335 R KEGG: noc:Noc_1139 excinuclease ABC subunit B; TIGRFAM: excinuclease ABC subunit B; PFAM: helicase; UvrB/UvrC protein; SMART: DEAD-like helicase ; helicase; excinuclease ABC subunit B complement(3293290..3295335) Nitrosococcus halophilus Nc4 8918218 YP_003528648.1 CDS Nhal_3210 NC_013960.1 3295428 3296615 D PFAM: aminotransferase class I and II; KEGG: noc:Noc_1138 aminotransferase, class I and II; class I and II aminotransferase 3295428..3296615 Nitrosococcus halophilus Nc4 8918219 YP_003528649.1 CDS Nhal_3211 NC_013960.1 3297160 3297597 R PFAM: protein of unknown function DUF29; KEGG: noc:Noc_0766 hypothetical protein; hypothetical protein complement(3297160..3297597) Nitrosococcus halophilus Nc4 8918221 YP_003528650.1 CDS Nhal_3212 NC_013960.1 3297663 3297863 R hypothetical protein complement(3297663..3297863) Nitrosococcus halophilus Nc4 8918222 YP_003528651.1 CDS Nhal_3214 NC_013960.1 3298309 3299454 R PFAM: transposase IS4 family protein; KEGG: aby:ABAYE3624 IS4 family transposase; transposase IS4 family protein complement(3298309..3299454) Nitrosococcus halophilus Nc4 8918224 YP_003528652.1 CDS Nhal_3215 NC_013960.1 3299584 3300420 R TIGRFAM: hydrolase, ortholog 2, exosortase system type 1 associated; KEGG: noc:Noc_1962 esterase/lipase/thioesterase family protein; hydrolase, exosortase system type 1 associated complement(3299584..3300420) Nitrosococcus halophilus Nc4 8918225 YP_003528653.1 CDS Nhal_3216 NC_013960.1 3300417 3300689 R KEGG: noc:Noc_1963 hypothetical protein; hypothetical protein complement(3300417..3300689) Nitrosococcus halophilus Nc4 8918226 YP_003528654.1 CDS Nhal_3217 NC_013960.1 3300714 3301406 R KEGG: rfr:Rfer_0693 hypothetical protein; hypothetical protein complement(3300714..3301406) Nitrosococcus halophilus Nc4 8918227 YP_003528655.1 CDS Nhal_3218 NC_013960.1 3301475 3301876 R hypothetical protein complement(3301475..3301876) Nitrosococcus halophilus Nc4 8918228 YP_003528656.1 CDS Nhal_3219 NC_013960.1 3301873 3303447 R PFAM: GMC oxidoreductase; KEGG: pla:Plav_1858 FAD dependent oxidoreductase; GMC oxidoreductase complement(3301873..3303447) Nitrosococcus halophilus Nc4 8918229 YP_003528657.1 CDS Nhal_3220 NC_013960.1 3303479 3304432 R KEGG: nmu:Nmul_A2517 hypothetical protein; hypothetical protein complement(3303479..3304432) Nitrosococcus halophilus Nc4 8918230 YP_003528658.1 CDS Nhal_3221 NC_013960.1 3304429 3305388 R PFAM: polysaccharide deacetylase; KEGG: nmu:Nmul_A2518 hypothetical protein; polysaccharide deacetylase complement(3304429..3305388) Nitrosococcus halophilus Nc4 8918231 YP_003528659.1 CDS Nhal_3222 NC_013960.1 3305428 3307248 R PFAM: asparagine synthase; KEGG: noc:Noc_1965 asparagine synthase, glutamine-hydrolyzing; Asparagine synthase complement(3305428..3307248) Nitrosococcus halophilus Nc4 8918232 YP_003528660.1 CDS Nhal_3223 NC_013960.1 3307460 3308116 R KEGG: noc:Noc_1966 hypothetical protein; hypothetical protein complement(3307460..3308116) Nitrosococcus halophilus Nc4 8918233 YP_003528661.1 CDS Nhal_3224 NC_013960.1 3308308 3310158 R TIGRFAM: FkbH like protein; HAD-superfamily phosphatase, subfamily IIIC; KEGG: nmu:Nmul_A2515 FkbH domain-containing protein; FkbH like protein complement(3308308..3310158) Nitrosococcus halophilus Nc4 8918234 YP_003528662.1 CDS Nhal_3225 NC_013960.1 3310284 3310973 R KEGG: nmu:Nmul_A2516 methyltransferase; methyltransferase complement(3310284..3310973) Nitrosococcus halophilus Nc4 8918235 YP_003528663.1 CDS Nhal_3226 NC_013960.1 3311016 3312038 R PFAM: polysaccharide deacetylase; KEGG: noc:Noc_1967 polysaccharide deacetylase; polysaccharide deacetylase complement(3311016..3312038) Nitrosococcus halophilus Nc4 8918236 YP_003528664.1 CDS Nhal_3227 NC_013960.1 3312098 3314152 R PFAM: methyltransferase type 11; aminoglycoside phosphotransferase; methyltransferase type 12; protein of unknown function DUF343; KEGG: noc:Noc_1968 UbiE/COQ5 methyltransferase; type 11 methyltransferase complement(3312098..3314152) Nitrosococcus halophilus Nc4 8918237 YP_003528665.1 CDS Nhal_3229 NC_013960.1 3314487 3316817 R KEGG: noc:Noc_1969 hypothetical protein; hypothetical protein complement(3314487..3316817) Nitrosococcus halophilus Nc4 8918239 YP_003528666.1 CDS Nhal_3230 NC_013960.1 3316839 3318077 R PFAM: Kelch repeat protein; Kelch repeat-containing protein; KEGG: noc:Noc_1970 kelch repeat-containing protein; Kelch repeat-containing protein complement(3316839..3318077) Nitrosococcus halophilus Nc4 8918240 YP_003528667.1 CDS Nhal_3231 NC_013960.1 3318403 3319761 R KEGG: noc:Noc_1971 capsular polysaccharide biosynthesis protein CapK; capsular polysaccharide biosynthesis protein CapK complement(3318403..3319761) Nitrosococcus halophilus Nc4 8918241 YP_003528668.1 CDS Nhal_3232 NC_013960.1 3319758 3321008 R PFAM: glycosyl transferase group 1; KEGG: noc:Noc_1972 glycosyl transferase, group 1; group 1 glycosyl transferase complement(3319758..3321008) Nitrosococcus halophilus Nc4 8918242 YP_003528669.1 CDS Nhal_3233 NC_013960.1 3320971 3322221 R PFAM: glycosyl transferase group 1; KEGG: noc:Noc_1973 glycosyl transferase, group 1; group 1 glycosyl transferase complement(3320971..3322221) Nitrosococcus halophilus Nc4 8918243 YP_003528670.1 CDS Nhal_3234 NC_013960.1 3322218 3324785 R KEGG: noc:Noc_1974 hypothetical protein; hypothetical protein complement(3322218..3324785) Nitrosococcus halophilus Nc4 8918244 YP_003528671.1 CDS Nhal_3235 NC_013960.1 3324923 3326890 R KEGG: noc:Noc_1975 asparagine synthase, glutamine-hydrolyzing; TIGRFAM: exosortase 1 system-associated amidotransferase 1; asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II; exosortase 1 system-associated amidotransferase 1 complement(3324923..3326890) Nitrosococcus halophilus Nc4 8918245 YP_003528672.1 CDS Nhal_3236 NC_013960.1 3326955 3328115 R KEGG: noc:Noc_1976 UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase complement(3326955..3328115) Nitrosococcus halophilus Nc4 8918246 YP_003528673.1 CDS Nhal_3237 NC_013960.1 3328136 3329365 R TIGRFAM: sugar transferase, PEP-CTERM/EpsH1 system associated; PFAM: glycosyl transferase group 1; KEGG: noc:Noc_1977 glycosyl transferase, group 1; sugar transferase complement(3328136..3329365) Nitrosococcus halophilus Nc4 8918247 YP_003528674.1 CDS Nhal_3238 NC_013960.1 3329343 3330986 R TIGRFAM: exosortase 1; eight transmembrane protein EpsH; EpsI family protein; KEGG: noc:Noc_1978 hypothetical protein; exosortase 1 complement(3329343..3330986) Nitrosococcus halophilus Nc4 8918248 YP_003528675.1 CDS Nhal_3239 NC_013960.1 3330986 3332206 R TIGRFAM: sugar transferase, PEP-CTERM/EpsH1 system associated; KEGG: noc:Noc_1979 glycosyl transferase group 1; sugar transferase complement(3330986..3332206) Nitrosococcus halophilus Nc4 8918249 YP_003528676.1 CDS Nhal_3240 NC_013960.1 3332214 3333272 R TIGRFAM: FemAB-related protein, PEP-CTERM system-associated; KEGG: noc:Noc_1980 hypothetical protein; FemAB-like protein complement(3332214..3333272) Nitrosococcus halophilus Nc4 8918250 YP_003528677.1 CDS Nhal_3241 NC_013960.1 3333262 3334101 R TIGRFAM: polysaccharide deactylase family protein, PEP-CTERM locus subfamily; PFAM: polysaccharide deacetylase; KEGG: noc:Noc_1981 polysaccharide deacetylase; polysaccharide deactylase family protein complement(3333262..3334101) Nitrosococcus halophilus Nc4 8918251 YP_003528678.1 CDS Nhal_3242 NC_013960.1 3334341 3336059 R TIGRFAM: PEP-CTERM system associated protein; KEGG: noc:Noc_1982 hypothetical protein; PEP-CTERM system associated protein complement(3334341..3336059) Nitrosococcus halophilus Nc4 8918252 YP_003528679.1 CDS Nhal_3243 NC_013960.1 3336108 3336992 R KEGG: noc:Noc_1983 protein-tyrosine kinase; protein-tyrosine kinase complement(3336108..3336992) Nitrosococcus halophilus Nc4 8918253 YP_003528680.1 CDS Nhal_3244 NC_013960.1 3337202 3338806 R TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; PFAM: lipopolysaccharide biosynthesis protein; KEGG: noc:Noc_1984 lipopolysaccharide biosynthesis; polysaccharide chain length determinant protein complement(3337202..3338806) Nitrosococcus halophilus Nc4 8918254 YP_003528681.1 CDS Nhal_3245 NC_013960.1 3338818 3339459 R TIGRFAM: polysaccharide export protein, PEP-CTERM sytem-associated; PFAM: polysaccharide export protein; KEGG: noc:Noc_1985 polysaccharide export protein; polysaccharide export protein complement(3338818..3339459) Nitrosococcus halophilus Nc4 8918255 YP_003528682.1 CDS Nhal_3247 NC_013960.1 3341281 3344073 D KEGG: noc:Noc_1987 hypothetical protein; TIGRFAM: PEP-CTERM system TPR-repeat lipoprotein; PFAM: hypothetical protein; hypothetical protein; SMART: Tetratricopeptide domain protein; PEP-CTERM system TPR-repeat lipoprotein 3341281..3344073 Nitrosococcus halophilus Nc4 8918257 YP_003528683.1 CDS Nhal_3248 NC_013960.1 3344712 3345581 D PFAM: protein of unknown function DUF1555; KEGG: nmu:Nmul_A0373 hypothetical protein; hypothetical protein 3344712..3345581 Nitrosococcus halophilus Nc4 8918258 YP_003528684.1 CDS Nhal_3249 NC_013960.1 3345949 3346782 R PFAM: dehydrogenase; KEGG: nmu:Nmul_A0372 dehydrogenase catalytic domain-containing protein; dehydrogenase complement(3345949..3346782) Nitrosococcus halophilus Nc4 8918259 YP_003528685.1 CDS Nhal_3250 NC_013960.1 3346779 3347462 R KEGG: noc:Noc_1989 glycan acetyltransferase; glycan acetyltransferase complement(3346779..3347462) Nitrosococcus halophilus Nc4 8918260 YP_003528686.1 CDS Nhal_3251 NC_013960.1 3347554 3348765 R KEGG: noc:Noc_1988 glycosyl transferase; glycosyl transferase complement(3347554..3348765) Nitrosococcus halophilus Nc4 8918261 YP_003528687.1 CDS Nhal_3252 NC_013960.1 3349484 3349597 D hypothetical protein 3349484..3349597 Nitrosococcus halophilus Nc4 8918262 YP_003528688.1 CDS Nhal_3253 NC_013960.1 3349635 3349808 D hypothetical protein 3349635..3349808 Nitrosococcus halophilus Nc4 8918263 YP_003528689.1 CDS Nhal_3254 NC_013960.1 3350226 3351245 D TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: noc:Noc_1992 secretion protein HlyD; RND family efflux transporter MFP subunit 3350226..3351245 Nitrosococcus halophilus Nc4 8918264 YP_003528690.1 CDS Nhal_3255 NC_013960.1 3351288 3354374 D PFAM: acriflavin resistance protein; KEGG: noc:Noc_1993 acriflavin resistance protein; acriflavin resistance protein 3351288..3354374 Nitrosococcus halophilus Nc4 8918265 YP_003528691.1 CDS Nhal_3256 NC_013960.1 3354442 3356451 R PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: noc:Noc_1994 molybdopterin/thiamine biosynthesis family protein; UBA/THIF-type NAD/FAD binding protein complement(3354442..3356451) Nitrosococcus halophilus Nc4 8918266 YP_003528692.1 CDS Nhal_3257 NC_013960.1 3356617 3356868 R hypothetical protein complement(3356617..3356868) Nitrosococcus halophilus Nc4 8918267 YP_003528693.1 CDS Nhal_3258 NC_013960.1 3357245 3357994 D KEGG: noc:Noc_1995 hypothetical protein; hypothetical protein 3357245..3357994 Nitrosococcus halophilus Nc4 8918268 YP_003528694.1 CDS Nhal_3259 NC_013960.1 3358328 3359212 D KEGG: noc:Noc_1996 hypothetical protein; hypothetical protein 3358328..3359212 Nitrosococcus halophilus Nc4 8918269 YP_003528695.1 CDS Nhal_3260 NC_013960.1 3359773 3359931 R KEGG: neu:NE2230 hypothetical protein; hypothetical protein complement(3359773..3359931) Nitrosococcus halophilus Nc4 8918270 YP_003528696.1 CDS Nhal_3261 NC_013960.1 3359915 3360055 R hypothetical protein complement(3359915..3360055) Nitrosococcus halophilus Nc4 8918271 YP_003528697.1 CDS Nhal_3262 NC_013960.1 3360288 3360497 D KEGG: bvi:Bcep1808_3249 hypothetical protein; hypothetical protein 3360288..3360497 Nitrosococcus halophilus Nc4 8918272 YP_003528698.1 CDS Nhal_3263 NC_013960.1 3360497 3360775 D KEGG: bvi:Bcep1808_3250 hypothetical protein; hypothetical protein 3360497..3360775 Nitrosococcus halophilus Nc4 8918273 YP_003528699.1 CDS Nhal_3265 NC_013960.1 3361103 3361504 R KEGG: neu:NE2230 hypothetical protein; hypothetical protein complement(3361103..3361504) Nitrosococcus halophilus Nc4 8918275 YP_003528700.1 CDS Nhal_3266 NC_013960.1 3361703 3361936 D PFAM: SpoVT/AbrB domain protein; KEGG: rpb:RPB_3730 SpoVT/AbrB-like; SpoVT/AbrB domain-containing protein 3361703..3361936 Nitrosococcus halophilus Nc4 8918276 YP_003528701.1 CDS Nhal_3267 NC_013960.1 3361936 3362352 D PFAM: PilT protein domain protein; KEGG: tgr:Tgr7_1319 PilT protein domain protein; PilT protein domain-containing protein 3361936..3362352 Nitrosococcus halophilus Nc4 8918277 YP_003528702.1 CDS Nhal_3268 NC_013960.1 3362360 3362485 R hypothetical protein complement(3362360..3362485) Nitrosococcus halophilus Nc4 8918278 YP_003528703.1 CDS Nhal_3269 NC_013960.1 3362594 3363949 R KEGG: noc:Noc_1997 sigma-54 specific fis family two component transcriptional regulator; TIGRFAM: PEP-CTERM system response regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; response regulator receiver; PEP-CTERM system response regulator complement(3362594..3363949) Nitrosococcus halophilus Nc4 8918279 YP_003528704.1 CDS Nhal_3270 NC_013960.1 3363946 3366024 R KEGG: noc:Noc_1998 signal transduction histidine kinase; TIGRFAM: PEP-CTERM system histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PEP-CTERM system histidine kinase complement(3363946..3366024) Nitrosococcus halophilus Nc4 8918280 YP_003528705.1 CDS Nhal_3271 NC_013960.1 3366047 3367444 R KEGG: noc:Noc_1999 undecaprenyl-phosphate galactosephosphotransferase; TIGRFAM: sugar transferase, PEP-CTERM system associated; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; sugar transferase complement(3366047..3367444) Nitrosococcus halophilus Nc4 8918281 YP_003528706.1 CDS Nhal_3272 NC_013960.1 3367921 3368505 D PFAM: cytochrome C class I; KEGG: noc:Noc_2000 cytochrome c, class I; cytochrome C class I 3367921..3368505 Nitrosococcus halophilus Nc4 8918283 YP_003528707.1 CDS Nhal_3273 NC_013960.1 3368453 3369190 D PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: neu:NE2386 SH3 domain-containing protein; SH3 type 3 domain-containing protein 3368453..3369190 Nitrosococcus halophilus Nc4 8918284 YP_003528708.1 CDS Nhal_3274 NC_013960.1 3369431 3371302 R KEGG: noc:Noc_2001 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dihydroxy-acid dehydratase complement(3369431..3371302) Nitrosococcus halophilus Nc4 8918285 YP_003528709.1 CDS Nhal_3275 NC_013960.1 3371486 3373492 R TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: noc:Noc_2002 UvrD/REP helicase; ATP-dependent DNA helicase Rep complement(3371486..3373492) Nitrosococcus halophilus Nc4 8918286 YP_003528710.1 CDS Nhal_3276 NC_013960.1 3373479 3374996 R KEGG: noc:Noc_2003 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; Mg chelatase subunit ChlI complement(3373479..3374996) Nitrosococcus halophilus Nc4 8918287 YP_003528711.1 CDS Nhal_3277 NC_013960.1 3375042 3375359 R PFAM: protein of unknown function DUF526; KEGG: noc:Noc_2004 hypothetical protein; hypothetical protein complement(3375042..3375359) Nitrosococcus halophilus Nc4 8918288 YP_003528712.1 CDS Nhal_3278 NC_013960.1 3375468 3376259 R TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; transposase IS891/IS1136/IS1341 family; KEGG: pin:Ping_3063 transposase, IS605 OrfB family protein; transposase, IS605 OrfB family complement(3375468..3376259) Nitrosococcus halophilus Nc4 8918289 YP_003528713.1 CDS Nhal_3279 NC_013960.1 3376560 3377798 D PFAM: protein of unknown function DUF1597; KEGG: noc:Noc_2005 hypothetical protein; hypothetical protein 3376560..3377798 Nitrosococcus halophilus Nc4 8918290 YP_003528714.1 CDS Nhal_3280 NC_013960.1 3377844 3379124 D TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: tgr:Tgr7_3120 ammonium transporter; ammonium transporter 3377844..3379124 Nitrosococcus halophilus Nc4 8918291 YP_003528715.1 CDS Nhal_3281 NC_013960.1 3379515 3380831 D KEGG: noc:Noc_2013 N-acetylglutamate synthase; TIGRFAM: amino-acid N-acetyltransferase; PFAM: aspartate/glutamate/uridylate kinase; GCN5-related N-acetyltransferase; amino-acid N-acetyltransferase 3379515..3380831 Nitrosococcus halophilus Nc4 8918292 YP_003528716.1 CDS Nhal_3282 NC_013960.1 3381035 3382474 R TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; GatB/Yqey domain protein; GatB central domain protein; KEGG: noc:Noc_2014 aspartyl/glutamyl-tRNA amidotransferase subunit B; glutamyl-tRNA(Gln) amidotransferase subunit beta complement(3381035..3382474) Nitrosococcus halophilus Nc4 8918293 YP_003528717.1 CDS Nhal_3283 NC_013960.1 3382505 3383896 R KEGG: noc:Noc_2015 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase complement(3382505..3383896) Nitrosococcus halophilus Nc4 8918294 YP_003528718.1 CDS Nhal_3284 NC_013960.1 3384171 3385166 D TIGRFAM: secretion ATPase, PEP-CTERM locus subfamily; SMART: ATPase AAA; KEGG: noc:Noc_2016 ATPase; secretion ATPase 3384171..3385166 Nitrosococcus halophilus Nc4 8918295 YP_003528719.1 CDS Nhal_3285 NC_013960.1 3385171 3385836 R TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: haloacid dehalogenase; KEGG: noc:Noc_2017 HAD family hydrolase; HAD-superfamily hydrolase complement(3385171..3385836) Nitrosococcus halophilus Nc4 8918296 YP_003528720.1 CDS Nhal_3286 NC_013960.1 3385979 3386527 D PFAM: NUDIX hydrolase; KEGG: noc:Noc_2018 NUDIX hydrolase; NUDIX hydrolase 3385979..3386527 Nitrosococcus halophilus Nc4 8918297 YP_003528721.1 CDS Nhal_3289 NC_013960.1 3387562 3388110 R PFAM: NUDIX hydrolase; KEGG: noc:Noc_2018 NUDIX hydrolase; NUDIX hydrolase complement(3387562..3388110) Nitrosococcus halophilus Nc4 8918300 YP_003528722.1 CDS Nhal_3290 NC_013960.1 3389007 3390455 D TIGRFAM: undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: mfa:Mfla_2028 sugar transferase; UDP-phosphate glucose phosphotransferase 3389007..3390455 Nitrosococcus halophilus Nc4 8918301 YP_003528723.1 CDS Nhal_3292 NC_013960.1 3391885 3393045 D PFAM: Fibronectin type III domain protein; KEGG: dps:DP1469 fimbrial biogenesis protein PilY1; Fibronectin type III domain-containing protein 3391885..3393045 Nitrosococcus halophilus Nc4 8918303 YP_003528724.1 CDS Nhal_3293 NC_013960.1 3393910 3395100 D PFAM: Fibronectin type III domain protein; KEGG: dps:DP1469 fimbrial biogenesis protein PilY1; Fibronectin type III domain-containing protein 3393910..3395100 Nitrosococcus halophilus Nc4 8918304 YP_003528725.1 CDS Nhal_3294 NC_013960.1 3395193 3396065 D KEGG: hch:HCH_03372 hypothetical protein; hypothetical protein 3395193..3396065 Nitrosococcus halophilus Nc4 8918305 YP_003528726.1 CDS Nhal_3295 NC_013960.1 3396156 3397256 R KEGG: hch:HCH_03381 hypothetical protein; hypothetical protein complement(3396156..3397256) Nitrosococcus halophilus Nc4 8918306 YP_003528727.1 CDS Nhal_3296 NC_013960.1 3397358 3397822 R KEGG: mxa:MXAN_0956 hypothetical protein; hypothetical protein complement(3397358..3397822) Nitrosococcus halophilus Nc4 8918307 YP_003528728.1 CDS Nhal_3297 NC_013960.1 3397883 3398601 D KEGG: ngk:NGK_0512 hypothetical protein; hypothetical protein join(3397883..3398161,3398161..3398601) Nitrosococcus halophilus Nc4 8918308 YP_003528729.1 CDS Nhal_3298 NC_013960.1 3398842 3398976 D hypothetical protein 3398842..3398976 Nitrosococcus halophilus Nc4 8918309 YP_003528730.1 CDS Nhal_3299 NC_013960.1 3399229 3400059 R KEGG: hch:HCH_03372 hypothetical protein; hypothetical protein complement(3399229..3400059) Nitrosococcus halophilus Nc4 8918310 YP_003528731.1 CDS Nhal_3301 NC_013960.1 3400602 3401522 R KEGG: dps:DPPB74 glycosyltransferase; glycosyltransferase complement(3400602..3401522) Nitrosococcus halophilus Nc4 8918312 YP_003528732.1 CDS Nhal_3302 NC_013960.1 3401970 3402911 R PFAM: sulfotransferase; KEGG: afr:AFE_1817 sulfotransferase domain protein; sulfotransferase complement(3401970..3402911) Nitrosococcus halophilus Nc4 8918313 YP_003528733.1 CDS Nhal_3303 NC_013960.1 3402954 3404465 R PFAM: glucose-methanol-choline oxidoreductase; KEGG: pol:Bpro_1884 FAD dependent oxidoreductase; glucose-methanol-choline oxidoreductase complement(3402954..3404465) Nitrosococcus halophilus Nc4 8918314 YP_003528734.1 CDS Nhal_3304 NC_013960.1 3404589 3405260 R PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: reu:Reut_A0587 UbiE/COQ5 methyltransferase; type 11 methyltransferase complement(3404589..3405260) Nitrosococcus halophilus Nc4 8918315 YP_003528735.1 CDS Nhal_3305 NC_013960.1 3405457 3406188 R KEGG: nodulation protein-related; hypothetical protein complement(3405457..3406188) Nitrosococcus halophilus Nc4 8918316 YP_003528736.1 CDS Nhal_3306 NC_013960.1 3406538 3408052 R PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: hch:HCH_06176 O-antigen and teichoic acid export protein; polysaccharide biosynthesis protein complement(3406538..3408052) Nitrosococcus halophilus Nc4 8918317 YP_003528737.1 CDS Nhal_3307 NC_013960.1 3408077 3408745 R KEGG: pla:Plav_3095 hexapaptide repeat-containing transferase; acetyltransferase (isoleucine patch superfamily)-like protein complement(3408077..3408745) Nitrosococcus halophilus Nc4 8918318 YP_003528738.1 CDS Nhal_3308 NC_013960.1 3408969 3409511 R PFAM: membrane-bound metal-dependent hydrolase; KEGG: hch:HCH_06173 hypothetical protein; membrane-bound metal-dependent hydrolase complement(3408969..3409511) Nitrosococcus halophilus Nc4 8918319 YP_003528739.1 CDS Nhal_3309 NC_013960.1 3409489 3410670 R PFAM: glycosyl transferase group 1; KEGG: bpe:BP3671 glycosyl transferase; group 1 glycosyl transferase complement(3409489..3410670) Nitrosococcus halophilus Nc4 8918320 YP_003528740.1 CDS Nhal_3310 NC_013960.1 3410719 3411708 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: ade:Adeh_1168 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(3410719..3411708) Nitrosococcus halophilus Nc4 8918321 YP_003528741.1 CDS Nhal_3311 NC_013960.1 3411756 3413474 R PFAM: FAD dependent oxidoreductase; monooxygenase FAD-binding; KEGG: pla:Plav_1671 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(3411756..3413474) Nitrosococcus halophilus Nc4 8918322 YP_003528742.1 CDS Nhal_3312 NC_013960.1 3413546 3414334 R KEGG: sit:TM1040_3846 methyltransferase type 11; hypothetical protein complement(3413546..3414334) Nitrosococcus halophilus Nc4 8918323 YP_003528743.1 CDS Nhal_3313 NC_013960.1 3415363 3416223 R PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_1076 glycosyl transferase family 2; family 2 glycosyl transferase complement(3415363..3416223) Nitrosococcus halophilus Nc4 8918324 YP_003528744.1 CDS Nhal_3314 NC_013960.1 3416581 3417465 R PFAM: glycosyl transferase family 2; KEGG: dol:Dole_1298 glycosyl transferase; family 2 glycosyl transferase complement(3416581..3417465) Nitrosococcus halophilus Nc4 8918325 YP_003528745.1 CDS Nhal_3315 NC_013960.1 3417537 3418289 R KEGG: mca:MCA1437 sugar transferase/glycosyl transferase, WecB/TagA/CpsF family protein; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; WecB/TagA/CpsF family glycosyl transferase complement(3417537..3418289) Nitrosococcus halophilus Nc4 8918326 YP_003528746.1 CDS Nhal_3316 NC_013960.1 3418322 3419230 R PFAM: glycosyl transferase family 2; KEGG: mrd:Mrad2831_5475 glycosyl transferase; family 2 glycosyl transferase complement(3418322..3419230) Nitrosococcus halophilus Nc4 8918327 YP_003528747.1 CDS Nhal_3317 NC_013960.1 3419328 3419972 R KEGG: met:M446_4974 methyltransferase type 11; hypothetical protein complement(3419328..3419972) Nitrosococcus halophilus Nc4 8918328 YP_003528748.1 CDS Nhal_3318 NC_013960.1 3420213 3421208 D PFAM: sulfotransferase; KEGG: afr:AFE_1817 sulfotransferase domain protein; sulfotransferase 3420213..3421208 Nitrosococcus halophilus Nc4 8918329 YP_003528749.1 CDS Nhal_3319 NC_013960.1 3421285 3422100 R PFAM: sulfotransferase; KEGG: hch:HCH_02730 hypothetical protein; sulfotransferase complement(3421285..3422100) Nitrosococcus halophilus Nc4 8918330 YP_003528750.1 CDS Nhal_3320 NC_013960.1 3422101 3423381 R KEGG: gur:Gura_2594 hypothetical protein; hypothetical protein complement(3422101..3423381) Nitrosococcus halophilus Nc4 8918331 YP_003528751.1 CDS Nhal_3322 NC_013960.1 3423825 3424325 R KEGG: cak:Caul_5241 transposase; transposase complement(3423825..3424325) Nitrosococcus halophilus Nc4 8918333 YP_003528752.1 CDS Nhal_3323 NC_013960.1 3424369 3424791 R KEGG: mno:Mnod_8191 transposase and inactivated derivatives-like protein; transposase complement(3424369..3424791) Nitrosococcus halophilus Nc4 8918334 YP_003528753.1 CDS Nhal_3325 NC_013960.1 3425554 3427149 R PFAM: polysaccharide biosynthesis protein; multi antimicrobial extrusion protein MatE; KEGG: dol:Dole_1836 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(3425554..3427149) Nitrosococcus halophilus Nc4 8918336 YP_003528754.1 CDS Nhal_3326 NC_013960.1 3427146 3428051 R PFAM: sulfotransferase; KEGG: dat:HRM2_25330 3-beta-hydroxysteroid sulfotransferase (phenol sulfotransferase); sulfotransferase complement(3427146..3428051) Nitrosococcus halophilus Nc4 8918337 YP_003528755.1 CDS Nhal_3328 NC_013960.1 3428955 3429893 R PFAM: glycosyl transferase family 2; KEGG: ppd:Ppro_2585 glycosyl transferase; family 2 glycosyl transferase complement(3428955..3429893) Nitrosococcus halophilus Nc4 8918339 YP_003528756.1 CDS Nhal_3329 NC_013960.1 3429893 3430852 R PFAM: glycosyl transferase family 2; KEGG: glo:Glov_2754 glycosyl transferase family 2; family 2 glycosyl transferase complement(3429893..3430852) Nitrosococcus halophilus Nc4 8918340 YP_003528757.1 CDS Nhal_3330 NC_013960.1 3430953 3432386 R KEGG: bav:BAV2927 4-amino-4-deoxy-L-arabinose lipid A transferase; hypothetical protein complement(3430953..3432386) Nitrosococcus halophilus Nc4 8918341 YP_003528758.1 CDS Nhal_3332 NC_013960.1 3433666 3434766 R KEGG: sfu:Sfum_0087 hypothetical protein; hypothetical protein complement(3433666..3434766) Nitrosococcus halophilus Nc4 8918343 YP_003528759.1 CDS Nhal_3333 NC_013960.1 3435229 3436035 R KEGG: sat:SYN_00779 tyrosine-protein kinase; tyrosine-protein kinase complement(3435229..3436035) Nitrosococcus halophilus Nc4 8918344 YP_003528760.1 CDS Nhal_3334 NC_013960.1 3436072 3437745 R PFAM: lipopolysaccharide biosynthesis protein; KEGG: gme:Gmet_1446 lipopolysaccharide biosynthesis; lipopolysaccharide biosynthesis protein complement(3436072..3437745) Nitrosococcus halophilus Nc4 8918345 YP_003528761.1 CDS Nhal_3336 NC_013960.1 3437985 3439202 R KEGG: sat:SYN_00781 hypothetical protein; hypothetical protein complement(3437985..3439202) Nitrosococcus halophilus Nc4 8918347 YP_003528762.1 CDS Nhal_3337 NC_013960.1 3439235 3439852 R PFAM: polysaccharide export protein; KEGG: gur:Gura_2582 polysaccharide export protein; polysaccharide export protein complement(3439235..3439852) Nitrosococcus halophilus Nc4 8918348 YP_003528763.1 CDS Nhal_3338 NC_013960.1 3440182 3440899 R KEGG: ngk:NGK_0512 hypothetical protein; hypothetical protein complement(join(3440182..3440622,3440621..3440899)) Nitrosococcus halophilus Nc4 8918349 YP_003528764.1 CDS Nhal_3340 NC_013960.1 3441917 3442546 R KEGG: noc:Noc_0134 hypothetical protein; hypothetical protein complement(3441917..3442546) Nitrosococcus halophilus Nc4 8918351 YP_003528765.1 CDS Nhal_3341 NC_013960.1 3442539 3443084 R PFAM: protein of unknown function ATP binding; KEGG: noc:Noc_0133 ATP binding protein; hypothetical protein complement(3442539..3443084) Nitrosococcus halophilus Nc4 8918352 YP_003528766.1 CDS Nhal_3342 NC_013960.1 3443124 3444323 R KEGG: noc:Noc_0132 hypothetical protein; hypothetical protein complement(3443124..3444323) Nitrosococcus halophilus Nc4 8918353 YP_003528767.1 CDS Nhal_3343 NC_013960.1 3444344 3445081 R KEGG: lch:Lcho_0654 hypothetical protein; hypothetical protein complement(3444344..3445081) Nitrosococcus halophilus Nc4 8918354 YP_003528768.1 CDS Nhal_3344 NC_013960.1 3445586 3445981 D PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: noc:Noc_0131 response regulator receiver; response regulator receiver 3445586..3445981 Nitrosococcus halophilus Nc4 8918355 YP_003528769.1 CDS Nhal_3345 NC_013960.1 3446068 3446433 D PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: noc:Noc_0130 response regulator receiver; response regulator receiver 3446068..3446433 Nitrosococcus halophilus Nc4 8918356 YP_003528770.1 CDS Nhal_3346 NC_013960.1 3446446 3446994 D PFAM: chemotaxis protein CheW; SMART: chemotaxis protein CheW; KEGG: noc:Noc_0129 CheW-like protein; chemotaxis protein CheW 3446446..3446994 Nitrosococcus halophilus Nc4 8918357 YP_003528771.1 CDS Nhal_3347 NC_013960.1 3447078 3448691 D PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: noc:Noc_0128 chemotaxis sensory transducer; chemotaxis sensory transducer 3447078..3448691 Nitrosococcus halophilus Nc4 8918358 YP_003528772.1 CDS Nhal_3348 NC_013960.1 3448711 3449565 D KEGG: noc:Noc_0127 MCP methyltransferase, CheR-type; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type; protein-glutamate O-methyltransferase 3448711..3449565 Nitrosococcus halophilus Nc4 8918359 YP_003528773.1 CDS Nhal_3349 NC_013960.1 3449584 3454872 D PFAM: response regulator receiver; chemotaxis protein CheW; Hpt domain protein; ATP-binding region ATPase domain protein; SMART: response regulator receiver; Hpt domain protein; ATP-binding region ATPase domain protein; chemotaxis protein CheW; KEGG: noc:Noc_0126 CheA signal transduction histidine kinase; response regulator receiver 3449584..3454872 Nitrosococcus halophilus Nc4 8918360 YP_003528774.1 CDS Nhal_3350 NC_013960.1 3454859 3455887 D PFAM: CheB methylesterase; KEGG: noc:Noc_0125 CheB methylesterase; protein-glutamate methylesterase 3454859..3455887 Nitrosococcus halophilus Nc4 8918361 YP_003528775.1 CDS Nhal_3351 NC_013960.1 3455915 3456448 D PFAM: chemotaxis protein CheW; SMART: chemotaxis protein CheW; KEGG: noc:Noc_0124 CheW-like protein; chemotaxis protein CheW 3455915..3456448 Nitrosococcus halophilus Nc4 8918362 YP_003528776.1 CDS Nhal_3352 NC_013960.1 3456470 3457201 R PFAM: protein of unknown function DUF558; KEGG: noc:Noc_0123 hypothetical protein; hypothetical protein complement(3456470..3457201) Nitrosococcus halophilus Nc4 8918363 YP_003528777.1 CDS Nhal_3353 NC_013960.1 3457390 3458739 R TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: noc:Noc_0122 adenosylmethionine--8-amino-7-oxononanoate transaminase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(3457390..3458739) Nitrosococcus halophilus Nc4 8918364 YP_003528778.1 CDS Nhal_3354 NC_013960.1 3458920 3460071 D TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: dar:Daro_3461 secretion protein HlyD; RND family efflux transporter MFP subunit 3458920..3460071 Nitrosococcus halophilus Nc4 8918365 YP_003528779.1 CDS Nhal_3355 NC_013960.1 3460068 3460742 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: net:Neut_1342 ABC transporter-related protein; ABC transporter 3460068..3460742 Nitrosococcus halophilus Nc4 8918366 YP_003528780.1 CDS Nhal_3356 NC_013960.1 3460739 3461944 D PFAM: protein of unknown function DUF214; KEGG: azo:azo0833 ABC transporter permease; hypothetical protein 3460739..3461944 Nitrosococcus halophilus Nc4 8918367 YP_003528781.1 CDS Nhal_3357 NC_013960.1 3461949 3463145 D PFAM: protein of unknown function DUF214; KEGG: pin:Ping_3708 ABC transporter permease; hypothetical protein 3461949..3463145 Nitrosococcus halophilus Nc4 8918368 YP_003528782.1 CDS Nhal_3360 NC_013960.1 3463889 3464278 R KEGG: noc:Noc_1918 transcription elongation factor; transcription elongation factor complement(3463889..3464278) Nitrosococcus halophilus Nc4 8918371 YP_003528783.1 CDS Nhal_3361 NC_013960.1 3464662 3465360 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: noc:Noc_2690 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3464662..3465360 Nitrosococcus halophilus Nc4 8918372 YP_003528784.1 CDS Nhal_3362 NC_013960.1 3465439 3465921 R PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; KEGG: tgr:Tgr7_2828 hypothetical protein; protein-tyrosine phosphatase, low molecular weight complement(3465439..3465921) Nitrosococcus halophilus Nc4 8918373 YP_003528785.1 CDS Nhal_3363 NC_013960.1 3465921 3466373 R PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cti:RALTA_B1893 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(3465921..3466373) Nitrosococcus halophilus Nc4 8918374 YP_003528786.1 CDS Nhal_3364 NC_013960.1 3466370 3466732 R SMART: ArsR family transcriptional regulator; KEGG: net:Neut_2264 ArsR family transcriptional regulator protein; ArsR family transcriptional regulator complement(3466370..3466732) Nitrosococcus halophilus Nc4 8918375 YP_003528787.1 CDS Nhal_3365 NC_013960.1 3467084 3467326 R KEGG: rpc:RPC_2216 plasmid stabilization system protein; hypothetical protein complement(3467084..3467326) Nitrosococcus halophilus Nc4 8918376 YP_003528788.1 CDS Nhal_3366 NC_013960.1 3467579 3467887 D hypothetical protein 3467579..3467887 Nitrosococcus halophilus Nc4 8918377 YP_003528789.1 CDS Nhal_3367 NC_013960.1 3468040 3468261 D KEGG: cak:Caul_2323 hypothetical protein; hypothetical protein 3468040..3468261 Nitrosococcus halophilus Nc4 8918378 YP_003528790.1 CDS Nhal_3368 NC_013960.1 3468382 3468657 D TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: mpo:Mpop_0594 addiction module antidote protein, CopG/Arc/MetJ family; addiction module antidote protein 3468382..3468657 Nitrosococcus halophilus Nc4 8918379 YP_003528791.1 CDS Nhal_3369 NC_013960.1 3468738 3468953 D PFAM: plasmid stabilization system; KEGG: neu:NE0261 plasmid stabilization element ParE; plasmid stabilization system 3468738..3468953 Nitrosococcus halophilus Nc4 8918380 YP_003528792.1 CDS Nhal_3372 NC_013960.1 3470309 3471229 D KEGG: noc:Noc_A0025 hypothetical protein; hypothetical protein 3470309..3471229 Nitrosococcus halophilus Nc4 8918383 YP_003528793.1 CDS Nhal_3373 NC_013960.1 3471230 3472090 D PFAM: Domain of unknown function DUF1814; KEGG: noc:Noc_A0026 hypothetical protein; hypothetical protein 3471230..3472090 Nitrosococcus halophilus Nc4 8918384 YP_003528794.1 CDS Nhal_3374 NC_013960.1 3472220 3472471 D PFAM: WGR domain protein; SMART: WGR domain protein; KEGG: noc:Noc_A0027 WGR; WGR domain-containing protein 3472220..3472471 Nitrosococcus halophilus Nc4 8918385 YP_003528795.1 CDS Nhal_3375 NC_013960.1 3472468 3474510 R PFAM: protein of unknown function DUF87; KEGG: rsh:Rsph17029_3200 ATPase-like protein; hypothetical protein complement(3472468..3474510) Nitrosococcus halophilus Nc4 8918386 YP_003528796.1 CDS Nhal_3376 NC_013960.1 3474500 3475819 R KEGG: rsh:Rsph17029_3199 hypothetical protein; hypothetical protein complement(3474500..3475819) Nitrosococcus halophilus Nc4 8918387 YP_003528797.1 CDS Nhal_3377 NC_013960.1 3475828 3477780 R PFAM: DNA methylase N-4/N-6 domain protein; KEGG: nha:Nham_0582 DNA methylase N-4/N-6; adenine-specific DNA-methyltransferase complement(3475828..3477780) Nitrosococcus halophilus Nc4 8918388 YP_003528798.1 CDS Nhal_3378 NC_013960.1 3477796 3480471 R PFAM: type III restriction protein res subunit; KEGG: hdu:HD1690 type III restriction enzyme; type III site-specific deoxyribonuclease complement(3477796..3480471) Nitrosococcus halophilus Nc4 8918389 YP_003528799.1 CDS Nhal_3380 NC_013960.1 3481621 3481908 R hypothetical protein complement(3481621..3481908) Nitrosococcus halophilus Nc4 8918391 YP_003528800.1 CDS Nhal_3381 NC_013960.1 3482140 3482445 R TIGRFAM: AbrB family transcriptional regulator; PFAM: SpoVT/AbrB domain protein; KEGG: amc:MADE_03478 hypothetical protein; AbrB family transcriptional regulator complement(3482140..3482445) Nitrosococcus halophilus Nc4 8918392 YP_003528801.1 CDS Nhal_3382 NC_013960.1 3482448 3482843 R TIGRFAM: death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic; KEGG: lch:Lcho_1579 death-on-curing family protein; death-on-curing family protein complement(3482448..3482843) Nitrosococcus halophilus Nc4 8918393 YP_003528802.1 CDS Nhal_3383 NC_013960.1 3482854 3483078 R TIGRFAM: addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: xau:Xaut_0218 addiction module antidote; addiction module antidote complement(3482854..3483078) Nitrosococcus halophilus Nc4 8918394 YP_003528803.1 CDS Nhal_3384 NC_013960.1 3483275 3484030 D PFAM: protein of unknown function DUF152; KEGG: noc:Noc_0579 hypothetical protein; hypothetical protein 3483275..3484030 Nitrosococcus halophilus Nc4 8918395 YP_003528804.1 CDS Nhal_3385 NC_013960.1 3484071 3484979 D PFAM: glycosyl transferase family 9; KEGG: noc:Noc_0578 glycosyl transferase; glycosyl transferase family protein 3484071..3484979 Nitrosococcus halophilus Nc4 8918396 YP_003528805.1 CDS Nhal_3386 NC_013960.1 3484976 3486043 D PFAM: glycosyl transferase group 1; KEGG: noc:Noc_0577 glycosyl transferase, group 1; group 1 glycosyl transferase 3484976..3486043 Nitrosococcus halophilus Nc4 8918397 YP_003528806.1 CDS Nhal_3387 NC_013960.1 3486082 3487077 R PFAM: glycosyl transferase family 9; KEGG: noc:Noc_0576 glycosyl transferase; glycosyl transferase family protein complement(3486082..3487077) Nitrosococcus halophilus Nc4 8918398 YP_003528807.1 CDS Nhal_3388 NC_013960.1 3487155 3488363 R PFAM: O-antigen polymerase; KEGG: noc:Noc_0562 O-antigen polymerase; O-antigen polymerase complement(3487155..3488363) Nitrosococcus halophilus Nc4 8918399 YP_003528808.1 CDS Nhal_3389 NC_013960.1 3488347 3489357 R PFAM: glycosyl transferase family 9; KEGG: noc:Noc_0561 glycosyl transferase; glycosyl transferase family protein complement(3488347..3489357) Nitrosococcus halophilus Nc4 8918400 YP_003528809.1 CDS Nhal_3390 NC_013960.1 3489383 3490507 R PFAM: glycosyl transferase group 1; KEGG: noc:Noc_0560 glycosyl transferase, group 1; group 1 glycosyl transferase complement(3489383..3490507) Nitrosococcus halophilus Nc4 8918401 YP_003528810.1 CDS Nhal_3391 NC_013960.1 3490489 3491430 R PFAM: protein of unknown function DUF1022; KEGG: noc:Noc_0559 hypothetical protein; hypothetical protein complement(3490489..3491430) Nitrosococcus halophilus Nc4 8918402 YP_003528811.1 CDS Nhal_3392 NC_013960.1 3491448 3492284 R TIGRFAM: spermidine synthase; PFAM: Spermine synthase; KEGG: noc:Noc_0558 spermidine synthase; spermidine synthase complement(3491448..3492284) Nitrosococcus halophilus Nc4 8918403 YP_003528812.1 CDS Nhal_3393 NC_013960.1 3492310 3492417 R hypothetical protein complement(3492310..3492417) Nitrosococcus halophilus Nc4 8918404 YP_003528813.1 CDS Nhal_3394 NC_013960.1 3492676 3494565 D TIGRFAM: arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: noc:Noc_0557 arginine decarboxylase; arginine decarboxylase 3492676..3494565 Nitrosococcus halophilus Nc4 8918405 YP_003528814.1 CDS Nhal_3395 NC_013960.1 3494747 3495100 R KEGG: noc:Noc_0556 hypothetical protein; hypothetical protein complement(3494747..3495100) Nitrosococcus halophilus Nc4 8918406 YP_003528815.1 CDS Nhal_3396 NC_013960.1 3495123 3495848 R PFAM: conserved hypothetical protein; KEGG: noc:Noc_0555 hypothetical protein; hypothetical protein complement(3495123..3495848) Nitrosococcus halophilus Nc4 8918407 YP_003528816.1 CDS Nhal_3397 NC_013960.1 3495913 3498618 D KEGG: noc:Noc_0554 DNA polymerase A; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: 5'-3' exonuclease; DNA-directed DNA polymerase; 3'-5' exonuclease; Helix-hairpin-helix domain protein class 2; DNA polymerase I 3495913..3498618 Nitrosococcus halophilus Nc4 8918408 YP_003528817.1 CDS Nhal_3398 NC_013960.1 3498678 3498821 R hypothetical protein complement(3498678..3498821) Nitrosococcus halophilus Nc4 8918409 YP_003528818.1 CDS Nhal_3399 NC_013960.1 3498805 3499422 R PFAM: GTP-binding protein HSR1-related; KEGG: noc:Noc_0553 GTP-binding protein; GTP-binding protein HSR1-like protein complement(3498805..3499422) Nitrosococcus halophilus Nc4 8918410 YP_003528819.1 CDS Nhal_3400 NC_013960.1 3499590 3500213 D PFAM: cytochrome C class I; KEGG: noc:Noc_0552 cytochrome c, class I; cytochrome C class I 3499590..3500213 Nitrosococcus halophilus Nc4 8918411 YP_003528820.1 CDS Nhal_3401 NC_013960.1 3500249 3500905 D PFAM: DSBA oxidoreductase; KEGG: noc:Noc_0551 DsbA oxidoreductase; DSBA oxidoreductase 3500249..3500905 Nitrosococcus halophilus Nc4 8918412 YP_003528821.1 CDS Nhal_3403 NC_013960.1 3504317 3505612 D PFAM: restriction modification system DNA specificity domain; KEGG: gur:Gura_4042 restriction modification system DNA specificity subunit; restriction modification system DNA specificity domain-containing protein 3504317..3505612 Nitrosococcus halophilus Nc4 8918415 YP_003528822.1 CDS Nhal_3404 NC_013960.1 3505605 3506381 D KEGG: mpt:Mpe_A3611 hypothetical protein; hypothetical protein 3505605..3506381 Nitrosococcus halophilus Nc4 8918416 YP_003528823.1 CDS Nhal_3405 NC_013960.1 3506459 3507112 D KEGG: pmy:Pmen_0565 hypothetical protein; hypothetical protein 3506459..3507112 Nitrosococcus halophilus Nc4 8918417 YP_003528824.1 CDS Nhal_3406 NC_013960.1 3507112 3508173 D PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; KEGG: vei:Veis_0910 appr-1-p processing domain-containing protein; Appr-1-p processing domain-containing protein 3507112..3508173 Nitrosococcus halophilus Nc4 8918418 YP_003528825.1 CDS Nhal_3409 NC_013960.1 3511534 3512220 D PFAM: protein of unknown function DUF45; KEGG: gur:Gura_4036 hypothetical protein; hypothetical protein 3511534..3512220 Nitrosococcus halophilus Nc4 8918420 YP_003528826.1 CDS Nhal_3410 NC_013960.1 3512559 3513695 D KEGG: dat:HRM2_16320 mechanosensitive small-conductance channel MscC; mechanosensitive small-conductance channel MscC 3512559..3513695 Nitrosococcus halophilus Nc4 8918421 YP_003528827.1 CDS Nhal_3411 NC_013960.1 3513699 3514412 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bur:Bcep18194_B3095 3-oxoacyl-[acyl-carrier-protein] reductase; short-chain dehydrogenase/reductase SDR 3513699..3514412 Nitrosococcus halophilus Nc4 8918422 YP_003528828.1 CDS Nhal_3412 NC_013960.1 3514545 3514652 R hypothetical protein complement(3514545..3514652) Nitrosococcus halophilus Nc4 8918423 YP_003528829.1 CDS Nhal_3413 NC_013960.1 3514748 3515563 D PFAM: conserved hypothetical protein; KEGG: noc:Noc_2839 hypothetical protein; hypothetical protein 3514748..3515563 Nitrosococcus halophilus Nc4 8918424 YP_003528830.1 CDS Nhal_3414 NC_013960.1 3515566 3516339 D TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; KEGG: noc:Noc_2840 3-deoxy-D-manno-octulosonate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase 3515566..3516339 Nitrosococcus halophilus Nc4 8918425 YP_003528831.1 CDS Nhal_3415 NC_013960.1 3516367 3516642 R KEGG: noc:Noc_2841 hypothetical protein; hypothetical protein complement(3516367..3516642) Nitrosococcus halophilus Nc4 8918426 YP_003528832.1 CDS Nhal_3416 NC_013960.1 3516669 3517205 D PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; KEGG: noc:Noc_2842 low molecular weight phosphotyrosine protein phosphatase; protein-tyrosine phosphatase, low molecular weight 3516669..3517205 Nitrosococcus halophilus Nc4 8918427 YP_003528833.1 CDS Nhal_3417 NC_013960.1 3517202 3519559 R KEGG: noc:Noc_2843 ribonuclease E and G; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; Rne/Rng family ribonuclease complement(3517202..3519559) Nitrosococcus halophilus Nc4 8918428 YP_003528834.1 CDS Nhal_3418 NC_013960.1 3520518 3521882 R PFAM: ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: tgr:Tgr7_2002 recombination factor protein RarA; ATPase AAA complement(3520518..3521882) Nitrosococcus halophilus Nc4 8918429 YP_003528835.1 CDS Nhal_3419 NC_013960.1 3521857 3522444 R TIGRFAM: outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: noc:Noc_0348 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA complement(3521857..3522444) Nitrosococcus halophilus Nc4 8918430 YP_003528836.1 CDS Nhal_3420 NC_013960.1 3522523 3525219 R PFAM: cell divisionFtsK/SpoIIIE; SMART: ATPase AAA; KEGG: noc:Noc_0347 cell division FtsK/SpoIIIE; cell division FtsK/SpoIIIE complement(3522523..3525219) Nitrosococcus halophilus Nc4 8918431 YP_003528837.1 CDS Nhal_3421 NC_013960.1 3525385 3526458 R KEGG: noc:Noc_0346 alanine dehydrogenase and pyridine nucleotide transhydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; alanine dehydrogenase complement(3525385..3526458) Nitrosococcus halophilus Nc4 8918432 YP_003528838.1 CDS Nhal_3422 NC_013960.1 3526706 3527671 D TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: noc:Noc_0345 thioredoxin reductase; thioredoxin reductase 3526706..3527671 Nitrosococcus halophilus Nc4 8918433 YP_003528839.1 CDS Nhal_3423 NC_013960.1 3527718 3528551 D KEGG: noc:Noc_0344 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; DNA adenine methylase 3527718..3528551 Nitrosococcus halophilus Nc4 8918434 YP_003528840.1 CDS Nhal_3424 NC_013960.1 3528560 3528829 R KEGG: tbd:Tbd_1840 hypothetical protein; hypothetical protein complement(3528560..3528829) Nitrosococcus halophilus Nc4 8918435 YP_003528841.1 CDS Nhal_3425 NC_013960.1 3528855 3530108 R PFAM: peptidase M48 Ste24p; KEGG: noc:Noc_0342 STE24 endopeptidase; Ste24 endopeptidase complement(3528855..3530108) Nitrosococcus halophilus Nc4 8918436 YP_003528842.1 CDS Nhal_3426 NC_013960.1 3530199 3530750 D PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease; KEGG: noc:Noc_0341 oligoribonuclease; exonuclease RNase T and DNA polymerase III 3530199..3530750 Nitrosococcus halophilus Nc4 8918437 YP_003528843.1 CDS Nhal_3427 NC_013960.1 3530754 3531875 R TIGRFAM: iron-sulfur cluster binding protein; PFAM: domain of unknown function DUF1730; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: noc:Noc_0340 4Fe-4S cluster binding protein; iron-sulfur cluster binding protein complement(3530754..3531875) Nitrosococcus halophilus Nc4 8918438 YP_003528844.1 CDS Nhal_3428 NC_013960.1 3532016 3533506 D TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: noc:Noc_0339 hypothetical protein; carbohydrate kinase 3532016..3533506 Nitrosococcus halophilus Nc4 8918439 YP_003528845.1 CDS Nhal_3429 NC_013960.1 3533506 3533979 D PFAM: protein of unknown function UPF0079; KEGG: noc:Noc_0338 hypothetical protein; hypothetical protein 3533506..3533979 Nitrosococcus halophilus Nc4 8918440 YP_003528846.1 CDS Nhal_3430 NC_013960.1 3534062 3535402 D KEGG: noc:Noc_0337 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; peptidoglycan-binding LysM; SMART: cell wall hydrolase/autolysin; peptidoglycan-binding LysM; N-acetylmuramoyl-L-alanine amidase 3534062..3535402 Nitrosococcus halophilus Nc4 8918441 YP_003528847.1 CDS Nhal_3431 NC_013960.1 3535729 3537543 D TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; KEGG: noc:Noc_0336 DNA mismatch repair protein; DNA mismatch repair protein MutL 3535729..3537543 Nitrosococcus halophilus Nc4 8918442 YP_003528848.1 CDS Nhal_3432 NC_013960.1 3537591 3540311 R KEGG: noc:Noc_0335 PAS sensor diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; diguanylate cyclase complement(3537591..3540311) Nitrosococcus halophilus Nc4 8918443 YP_003528849.1 CDS Nhal_3433 NC_013960.1 3540298 3540498 R KEGG: noc:Noc_0335 PAS sensor diguanylate cyclase/phosphodiesterase; PAS sensor diguanylate cyclase/phosphodiesterase complement(3540298..3540498) Nitrosococcus halophilus Nc4 8918444 YP_003528850.1 CDS Nhal_3434 NC_013960.1 3540820 3541722 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: noc:Noc_0334 LysR family transcriptional regulator; LysR family transcriptional regulator complement(3540820..3541722) Nitrosococcus halophilus Nc4 8918445 YP_003528851.1 CDS Nhal_3435 NC_013960.1 3541963 3543384 D PFAM: ribulose bisphosphate carboxylase large chain; ribulose bisphosphate carboxylase, large subunit-like; KEGG: tbd:Tbd_2624 ribulose bisophosphate carboxylase; ribulose-bisphosphate carboxylase 3541963..3543384 Nitrosococcus halophilus Nc4 8918446 YP_003528852.1 CDS Nhal_3436 NC_013960.1 3543534 3543893 D PFAM: ribulose bisphosphate carboxylase small chain; KEGG: hha:Hhal_1045 ribulose-bisphosphate carboxylase; ribulose-bisphosphate carboxylase 3543534..3543893 Nitrosococcus halophilus Nc4 8918447 YP_003528853.1 CDS Nhal_3437 NC_013960.1 3543985 3544785 D PFAM: CbbQ/NirQ/NorQ domain protein; ATPase associated with various cellular activities AAA_5; KEGG: mca:MCA2746 CbbQ protein; CbbQ/NirQ/NorQ domain-containing protein 3543985..3544785 Nitrosococcus halophilus Nc4 8918448 YP_003528854.1 CDS Nhal_3438 NC_013960.1 3544850 3547198 D PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: mca:MCA2754 CbbO protein; von Willebrand factor A 3544850..3547198 Nitrosococcus halophilus Nc4 8918449 YP_003528855.1 CDS Nhal_3441 NC_013960.1 3548915 3549127 R hypothetical protein complement(3548915..3549127) Nitrosococcus halophilus Nc4 8918452 YP_003528856.1 CDS Nhal_3442 NC_013960.1 3549389 3550867 D PFAM: ribulose bisphosphate carboxylase large chain; ribulose bisphosphate carboxylase, large subunit-like; KEGG: noc:Noc_0333 ribulose bisophosphate carboxylase; ribulose-bisphosphate carboxylase 3549389..3550867 Nitrosococcus halophilus Nc4 8918453 YP_003528857.1 CDS Nhal_3443 NC_013960.1 3550887 3551321 D PFAM: ribulose bisphosphate carboxylase small chain; KEGG: noc:Noc_0332 ribulose-bisphosphate carboxylase; ribulose-bisphosphate carboxylase 3550887..3551321 Nitrosococcus halophilus Nc4 8918454 YP_003528858.1 CDS Nhal_3444 NC_013960.1 3551393 3552346 D KEGG: noc:Noc_0331 ATPase AAA; TIGRFAM: CbbX protein; PFAM: ATPase AAA; SMART: ATPase AAA; CbbX protein 3551393..3552346 Nitrosococcus halophilus Nc4 8918455 YP_003528859.1 CDS Nhal_3445 NC_013960.1 3552370 3552732 D KEGG: noc:Noc_0330 hypothetical protein; hypothetical protein 3552370..3552732 Nitrosococcus halophilus Nc4 8918456 YP_003528860.1 CDS Nhal_3446 NC_013960.1 3552988 3554052 R KEGG: noc:Noc_2804 fructose-1,6-bisphosphate aldolase; TIGRFAM: fructose-bisphosphate aldolase, class II, Calvin cycle subtype; ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; fructose-bisphosphate aldolase, class II, Calvin cycle subtype complement(3552988..3554052) Nitrosococcus halophilus Nc4 8918457 YP_003528861.1 CDS Nhal_3447 NC_013960.1 3554196 3555662 R KEGG: noc:Noc_2805 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: pyruvate kinase barrel; pyruvate kinase alpha/beta; pyruvate kinase complement(3554196..3555662) Nitrosococcus halophilus Nc4 8918458 YP_003528862.1 CDS Nhal_3448 NC_013960.1 3555741 3556919 R PFAM: phosphoglycerate kinase; KEGG: noc:Noc_2806 phosphoglycerate kinase; phosphoglycerate kinase complement(3555741..3556919) Nitrosococcus halophilus Nc4 8918459 YP_003528863.1 CDS Nhal_3449 NC_013960.1 3557058 3558071 R KEGG: noc:Noc_2807 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase complement(3557058..3558071) Nitrosococcus halophilus Nc4 8918460 YP_003528864.1 CDS Nhal_3450 NC_013960.1 3558170 3560167 R TIGRFAM: transketolase; PFAM: transketolase central region; transketolase; KEGG: noc:Noc_2808 transketolase; transketolase complement(3558170..3560167) Nitrosococcus halophilus Nc4 8918461 YP_003528865.1 CDS Nhal_3451 NC_013960.1 3560357 3561172 R KEGG: noc:Noc_2809 dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase; dihydrodipicolinate reductase complement(3560357..3561172) Nitrosococcus halophilus Nc4 8918462 YP_003528866.1 CDS Nhal_3452 NC_013960.1 3561298 3562443 R KEGG: noc:Noc_2810 heat shock protein DnaJ; TIGRFAM: chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; DnaJ central domain protein; SMART: heat shock protein DnaJ domain protein; chaperone protein DnaJ complement(3561298..3562443) Nitrosococcus halophilus Nc4 8918463 YP_003528867.1 CDS Nhal_3453 NC_013960.1 3562609 3564525 R TIGRFAM: chaperone protein DnaK; PFAM: heat shock protein 70; KEGG: noc:Noc_2811 heat shock protein HSP70; chaperone protein DnaK complement(3562609..3564525) Nitrosococcus halophilus Nc4 8918464 YP_003528868.1 CDS Nhal_3454 NC_013960.1 3564634 3565266 R PFAM: GrpE protein; KEGG: noc:Noc_2812 GrpE protein; GrpE protein complement(3564634..3565266) Nitrosococcus halophilus Nc4 8918465 YP_003528869.1 CDS Nhal_3455 NC_013960.1 3565345 3566394 R TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: negative regulator of class I heat shock protein; KEGG: noc:Noc_2813 negative regulator of class I heat shock protein; heat-inducible transcription repressor HrcA complement(3565345..3566394) Nitrosococcus halophilus Nc4 8918466 YP_003528870.1 CDS Nhal_3456 NC_013960.1 3566459 3567187 R KEGG: noc:Noc_2814 DNA polymerase III epsilon subunit; TIGRFAM: DNA polymerase III subunit epsilon; PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease; DNA polymerase III subunit epsilon complement(3566459..3567187) Nitrosococcus halophilus Nc4 8918467 YP_003528871.1 CDS Nhal_3457 NC_013960.1 3567187 3567630 R PFAM: ribonuclease H; KEGG: noc:Noc_2815 ribonuclease H; ribonuclease H complement(3567187..3567630) Nitrosococcus halophilus Nc4 8918468 YP_003528872.1 CDS Nhal_3458 NC_013960.1 3567623 3568429 R KEGG: noc:Noc_2816 generic methyl-transferase; generic methyl-transferase complement(3567623..3568429) Nitrosococcus halophilus Nc4 8918469 YP_003528873.1 CDS Nhal_3459 NC_013960.1 3568584 3569225 D PFAM: TetR family transcriptional regulator; KEGG: noc:Noc_2820 TetR family transcriptional regulator; TetR family transcriptional regulator 3568584..3569225 Nitrosococcus halophilus Nc4 8918470 YP_003528874.1 CDS Nhal_3460 NC_013960.1 3569296 3570345 D PFAM: membrane-bound metal-dependent hydrolase; KEGG: noc:Noc_2821 membrane-bound metal-dependent hydrolase; membrane-bound metal-dependent hydrolase 3569296..3570345 Nitrosococcus halophilus Nc4 8918471 YP_003528875.1 CDS Nhal_3461 NC_013960.1 3570342 3571337 R TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: noc:Noc_2822 dihydroorotate dehydrogenase 1; dihydroorotate dehydrogenase complement(3570342..3571337) Nitrosococcus halophilus Nc4 8918472 YP_003528876.1 CDS Nhal_3462 NC_013960.1 3571354 3571869 D TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: noc:Noc_2823 RNA methyltransferase TrmH, group 2; TrmH family RNA methyltransferase 3571354..3571869 Nitrosococcus halophilus Nc4 8918473 YP_003528877.1 CDS Nhal_3463 NC_013960.1 3571901 3572839 R PFAM: coproporphyrinogen III oxidase; KEGG: noc:Noc_2824 coproporphyrinogen III oxidase; coproporphyrinogen oxidase complement(3571901..3572839) Nitrosococcus halophilus Nc4 8918474 YP_003528878.1 CDS Nhal_3464 NC_013960.1 3573101 3573661 R PFAM: SUA5/yciO/yrdC domain; KEGG: noc:Noc_2825 translation factor, SUA5/YciO/YrdC-like; SUA5/yciO/yrdC domain-containing protein complement(3573101..3573661) Nitrosococcus halophilus Nc4 8918475 YP_003528879.1 CDS Nhal_3465 NC_013960.1 3573668 3574540 R PFAM: phosphoribulokinase/uridine kinase; KEGG: noc:Noc_2826 phosphoribulokinase; phosphoribulokinase complement(3573668..3574540) Nitrosococcus halophilus Nc4 8918476 YP_003528880.1 CDS Nhal_3466 NC_013960.1 3574627 3575955 R KEGG: noc:Noc_2827 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; phosphoribosylamine/glycine ligase complement(3574627..3575955) Nitrosococcus halophilus Nc4 8918477 YP_003528881.1 CDS Nhal_3467 NC_013960.1 3576280 3578157 D TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC; KEGG: noc:Noc_2828 thiamine biosynthesis protein ThiC; thiamine biosynthesis protein ThiC 3576280..3578157 Nitrosococcus halophilus Nc4 8918478 YP_003528882.1 CDS Nhal_3468 NC_013960.1 3578297 3578692 R KEGG: noc:Noc_2830 hypothetical protein; hypothetical protein complement(3578297..3578692) Nitrosococcus halophilus Nc4 8918479 YP_003528883.1 CDS Nhal_3469 NC_013960.1 3578701 3579396 R TIGRFAM: DNA mismatch repair endonuclease mutH; PFAM: DNA mismatch repair protein MutH; KEGG: noc:Noc_2831 DNA mismatch repair protein; DNA mismatch repair endonuclease mutH complement(3578701..3579396) Nitrosococcus halophilus Nc4 8918480 YP_003528884.1 CDS Nhal_3470 NC_013960.1 3579494 3580420 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_2832 ABC transporter ATPase; ABC transporter 3579494..3580420 Nitrosococcus halophilus Nc4 8918481 YP_003528885.1 CDS Nhal_3471 NC_013960.1 3580417 3581193 D PFAM: ABC transporter; KEGG: noc:Noc_2833 ABC transporter inner membrane subunit; ABC transporter 3580417..3581193 Nitrosococcus halophilus Nc4 8918482 YP_003528886.1 CDS Nhal_3472 NC_013960.1 3581221 3582054 D KEGG: noc:Noc_2834 hypothetical protein; hypothetical protein 3581221..3582054 Nitrosococcus halophilus Nc4 8918483 YP_003528887.1 CDS Nhal_3473 NC_013960.1 3582086 3582883 D KEGG: noc:Noc_2835 undecaprenyl pyrophosphate phosphatase; TIGRFAM: undecaprenol kinase; PFAM: bacitracin resistance protein BacA; undecaprenol kinase 3582086..3582883 Nitrosococcus halophilus Nc4 8918484 YP_003528888.1 CDS Nhal_3474 NC_013960.1 3582987 3583415 D TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13; KEGG: noc:Noc_2836 50S ribosomal protein L13; 50S ribosomal protein L13 3582987..3583415 Nitrosococcus halophilus Nc4 8918485 YP_003528889.1 CDS Nhal_3475 NC_013960.1 3583434 3583823 D PFAM: ribosomal protein S9; KEGG: noc:Noc_2837 ribosomal protein S9; 30S ribosomal protein S9 3583434..3583823 Nitrosococcus halophilus Nc4 8918486 YP_003528890.1 CDS Nhal_3476 NC_013960.1 3583940 3584254 R PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: noc:Noc_2738 XRE family transcriptional regulator; hypothetical protein complement(3583940..3584254) Nitrosococcus halophilus Nc4 8918488 YP_003528891.1 CDS Nhal_3478 NC_013960.1 3584647 3584961 R KEGG: gur:Gura_3008 XRE family plasmid maintenance system antidote protein; TIGRFAM: addiction module antidote protein, HigA family; PFAM: hypothetical protein; SMART: hypothetical protein; HigA family addiction module antidote protein complement(3584647..3584961) Nitrosococcus halophilus Nc4 8918490 YP_003528892.1 CDS Nhal_3480 NC_013960.1 3585129 3585344 D KEGG: sun:SUN_0701 hypothetical protein; hypothetical protein 3585129..3585344 Nitrosococcus halophilus Nc4 8918492 YP_003528893.1 CDS Nhal_3481 NC_013960.1 3585530 3586009 R KEGG: bja:blr7005 hypothetical protein; hypothetical protein complement(3585530..3586009) Nitrosococcus halophilus Nc4 8918493 YP_003528894.1 CDS Nhal_3482 NC_013960.1 3586225 3586365 R hypothetical protein complement(3586225..3586365) Nitrosococcus halophilus Nc4 8918494 YP_003528895.1 CDS Nhal_3483 NC_013960.1 3587026 3587397 R KEGG: noc:Noc_0522 hypothetical protein; hypothetical protein complement(3587026..3587397) Nitrosococcus halophilus Nc4 8918495 YP_003528896.1 CDS Nhal_3484 NC_013960.1 3587638 3587868 D TIGRFAM: prevent-host-death family protein; KEGG: rbo:A1I_03755 antitoxin of toxin-antitoxin (TA) system Phd; prevent-host-death family protein 3587638..3587868 Nitrosococcus halophilus Nc4 8918496 YP_003528897.1 CDS Nhal_3486 NC_013960.1 3588299 3590149 D PFAM: sodium/hydrogen exchanger; KEGG: noc:Noc_0521 sodium/hydrogen exchanger; sodium/hydrogen exchanger 3588299..3590149 Nitrosococcus halophilus Nc4 8918498 YP_003528898.1 CDS Nhal_3487 NC_013960.1 3590276 3591178 D PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: noc:Noc_2604 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent protein subunit beta 3590276..3591178 Nitrosococcus halophilus Nc4 8918499 YP_003528899.1 CDS Nhal_3488 NC_013960.1 3591165 3591677 R PFAM: Sarcosine oxidase subunit gamma; KEGG: bvi:Bcep1808_7299 sarcosine oxidase subunit gamma; sarcosine oxidase subunit gamma complement(3591165..3591677) Nitrosococcus halophilus Nc4 8918500 YP_003528900.1 CDS Nhal_3489 NC_013960.1 3591677 3594616 R TIGRFAM: sarcosine oxidase subunit alpha family; PFAM: glycine cleavage T protein (aminomethyl transferase); FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pub:SAR11_1282 sarcosine oxidase alpha chain; sarcosine oxidase subunit alpha complement(3591677..3594616) Nitrosococcus halophilus Nc4 8918501 YP_003528901.1 CDS Nhal_3490 NC_013960.1 3594613 3594885 R PFAM: Sarcosine oxidase subunit delta heterotetrameric; KEGG: bxe:Bxe_B1599 SoxD; sarcosine oxidase subunit delta complement(3594613..3594885) Nitrosococcus halophilus Nc4 8918502 YP_003528902.1 CDS Nhal_3491 NC_013960.1 3594901 3596160 R TIGRFAM: sarcosine oxidase subunit beta family; PFAM: FAD dependent oxidoreductase; KEGG: pub:SAR11_1284 sarcosine oxidase subunit beta; sarcosine oxidase subunit beta complement(3594901..3596160) Nitrosococcus halophilus Nc4 8918503 YP_003528903.1 CDS Nhal_3492 NC_013960.1 3596298 3597782 D PFAM: aldehyde dehydrogenase; KEGG: noc:Noc_2605 aldehyde dehydrogenase; Retinal dehydrogenase 3596298..3597782 Nitrosococcus halophilus Nc4 8918504 YP_003528904.1 CDS Nhal_3493 NC_013960.1 3597791 3598831 D PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: noc:Noc_2606 threonine aldolase; threonine aldolase 3597791..3598831 Nitrosococcus halophilus Nc4 8918505 YP_003528905.1 CDS Nhal_3494 NC_013960.1 3598831 3599970 D TIGRFAM: acetylornithine deacetylase (ArgE); acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: noc:Noc_2607 acetylornithine deacetylase ArgE; acetylornithine deacetylase (ArgE) 3598831..3599970 Nitrosococcus halophilus Nc4 8918506 YP_003528906.1 CDS Nhal_3495 NC_013960.1 3600014 3601366 D PFAM: peptidase M24; creatinase; KEGG: noc:Noc_2608 peptidase M24; peptidase M24 3600014..3601366 Nitrosococcus halophilus Nc4 8918507 YP_003528907.1 CDS Nhal_3496 NC_013960.1 3601560 3601847 R KEGG: bpy:Bphyt_4005 hypothetical protein; hypothetical protein complement(3601560..3601847) Nitrosococcus halophilus Nc4 8918508 YP_003528908.1 CDS Nhal_3497 NC_013960.1 3601976 3602071 R hypothetical protein complement(3601976..3602071) Nitrosococcus halophilus Nc4 8918509 YP_003528909.1 CDS Nhal_3498 NC_013960.1 3602425 3602634 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: noc:Noc_2609 cold-shock protein, DNA-binding; Cold-shock protein DNA-binding protein 3602425..3602634 Nitrosococcus halophilus Nc4 8918510 YP_003528910.1 CDS Nhal_3499 NC_013960.1 3602713 3602988 D PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: noc:Noc_2610 RNA-binding protein, RNP-1; RNP-1 like RNA-binding protein 3602713..3602988 Nitrosococcus halophilus Nc4 8918511 YP_003528911.1 CDS Nhal_3500 NC_013960.1 3603099 3604613 D PFAM: DEAD/DEAH box helicase; helicase domain protein; SMART: DEAD-like helicase ; helicase; KEGG: noc:Noc_2611 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase 3603099..3604613 Nitrosococcus halophilus Nc4 8918512 YP_003528912.1 CDS Nhal_3501 NC_013960.1 3604682 3605788 R PFAM: multicopper oxidase type 2; KEGG: noc:Noc_2612 ferroxidase; ferroxidase complement(3604682..3605788) Nitrosococcus halophilus Nc4 8918513 YP_003528913.1 CDS Nhal_3502 NC_013960.1 3606056 3607477 D TIGRFAM: rfaE bifunctional protein; cytidyltransferase-related domain protein; PFAM: PfkB domain protein; cytidylyltransferase; KEGG: noc:Noc_2613 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; rfaE bifunctional protein 3606056..3607477 Nitrosococcus halophilus Nc4 8918514 YP_003528914.1 CDS Nhal_3503 NC_013960.1 3607490 3608443 D TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: noc:Noc_2614 ADP-L-glycero-D-manno-heptose-6-epimerase; ADP-L-glycero-D-manno-heptose-6-epimerase 3607490..3608443 Nitrosococcus halophilus Nc4 8918515 YP_003528915.1 CDS Nhal_3504 NC_013960.1 3608474 3609775 D PFAM: 3-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: noc:Noc_2615 3-deoxy-D-manno-octulosonic-acid transferase-like; 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein 3608474..3609775 Nitrosococcus halophilus Nc4 8918516 YP_003528916.1 CDS Nhal_3505 NC_013960.1 3609852 3611207 R TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: noc:Noc_2616 type I secretion outer membrane protein, TolC; TolC family type I secretion outer membrane protein complement(3609852..3611207) Nitrosococcus halophilus Nc4 8918517 YP_003528917.1 CDS Nhal_3506 NC_013960.1 3611242 3611880 R PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; methyltransferase type 11; KEGG: noc:Noc_2617 protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase complement(3611242..3611880) Nitrosococcus halophilus Nc4 8918518 YP_003528918.1 CDS Nhal_3507 NC_013960.1 3611969 3612211 R PFAM: SirA family protein; KEGG: noc:Noc_2618 SirA-like protein; SirA family protein complement(3611969..3612211) Nitrosococcus halophilus Nc4 8918519 YP_003528919.1 CDS Nhal_3508 NC_013960.1 3612370 3613824 D PFAM: peptidase M48 Ste24p; Tetratricopeptide TPR_4; SMART: hypothetical protein; KEGG: noc:Noc_2619 peptidase M48, Ste24p; peptidase M48 Ste24p 3612370..3613824 Nitrosococcus halophilus Nc4 8918520 YP_003528920.1 CDS Nhal_3509 NC_013960.1 3614047 3614118 D TIGRFAM: coenzyme PQQ biosynthesis protein A; PFAM: coenzyme PQQ biosynthesis protein A; KEGG: pmy:Pmen_1965 coenzyme PQQ synthesis protein PqqA; coenzyme PQQ biosynthesis protein A 3614047..3614118 Nitrosococcus halophilus Nc4 8918521 YP_003528921.1 CDS Nhal_3510 NC_013960.1 3614192 3615112 D TIGRFAM: coenzyme PQQ biosynthesis protein B; KEGG: noc:Noc_2620 pyrroloquinoline quinone biosynthesis protein PqqB; coenzyme PQQ biosynthesis protein B 3614192..3615112 Nitrosococcus halophilus Nc4 8918522 YP_003528922.1 CDS Nhal_3511 NC_013960.1 3615129 3615851 D KEGG: noc:Noc_2621 pyrroloquinoline quinone biosynthesis protein PqqC; TIGRFAM: coenzyme PQQ biosynthesis protein C; PFAM: TENA/THI-4 domain protein; coenzyme PQQ biosynthesis protein C 3615129..3615851 Nitrosococcus halophilus Nc4 8918523 YP_003528923.1 CDS Nhal_3512 NC_013960.1 3615860 3616129 D PFAM: coenzyme PQQ synthesis D; KEGG: noc:Noc_2622 pyrroloquinoline quinone biosynthesis protein PqqD; coenzyme PQQ synthesis D 3615860..3616129 Nitrosococcus halophilus Nc4 8918524 YP_003528924.1 CDS Nhal_3513 NC_013960.1 3616098 3617249 D KEGG: noc:Noc_2623 pyrroloquinoline quinone biosynthesis protein PqqE; TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; coenzyme PQQ biosynthesis protein E 3616098..3617249 Nitrosococcus halophilus Nc4 8918525 YP_003528925.1 CDS Nhal_3514 NC_013960.1 3617249 3618190 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gsu:GSU0011 ABC transporter ATP-binding protein; ABC transporter 3617249..3618190 Nitrosococcus halophilus Nc4 8918526 YP_003528926.1 CDS Nhal_3515 NC_013960.1 3618193 3618996 D PFAM: ABC transporter; KEGG: reh:H16_B1044 ABC-type multidrug transporter; multidrug ABC transporter 3618193..3618996 Nitrosococcus halophilus Nc4 8918527 YP_003528927.1 CDS Nhal_3516 NC_013960.1 3619092 3619277 R KEGG: noc:Noc_2624 hypothetical protein; hypothetical protein complement(3619092..3619277) Nitrosococcus halophilus Nc4 8918528 YP_003528928.1 CDS Nhal_3517 NC_013960.1 3619342 3619491 R KEGG: dal:Dalk_3332 plasmid pRiA4b ORF-3 family protein; hypothetical protein complement(3619342..3619491) Nitrosococcus halophilus Nc4 8918529 YP_003528929.1 CDS Nhal_3518 NC_013960.1 3619605 3620528 D PFAM: Kelch repeat-containing protein; Kelch repeat protein; SMART: Kelch repeat-containing protein; KEGG: noc:Noc_0230 hypothetical protein; Kelch repeat-containing protein 3619605..3620528 Nitrosococcus halophilus Nc4 8918530 YP_003528930.1 CDS Nhal_3519 NC_013960.1 3620566 3621609 R TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD; transferase hexapeptide repeat containing protein; KEGG: noc:Noc_0229 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase, LpxD; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase complement(3620566..3621609) Nitrosococcus halophilus Nc4 8918531 YP_003528931.1 CDS Nhal_3520 NC_013960.1 3621667 3622086 R PFAM: conserved hypothetical protein; KEGG: noc:Noc_0228 hypothetical protein; hypothetical protein complement(3621667..3622086) Nitrosococcus halophilus Nc4 8918532 YP_003528932.1 CDS Nhal_3521 NC_013960.1 3622468 3622764 D KEGG: bac:BamMC406_0916 hypothetical protein; hypothetical protein 3622468..3622764 Nitrosococcus halophilus Nc4 8918533 YP_003528933.1 CDS Nhal_3522 NC_013960.1 3622761 3623249 D KEGG: pca:Pcar_0789 hypothetical protein; hypothetical protein 3622761..3623249 Nitrosococcus halophilus Nc4 8918534 YP_003528934.1 CDS Nhal_3523 NC_013960.1 3623253 3623738 D KEGG: pfs:PFLU4126C hypothetical protein; hypothetical protein 3623253..3623738 Nitrosococcus halophilus Nc4 8918535 YP_003528935.1 CDS Nhal_3524 NC_013960.1 3623746 3625116 R TIGRFAM: DNA repair protein RadA; SMART: ATPase AAA; KEGG: noc:Noc_0225 DNA repair protein RadA; DNA repair protein RadA complement(3623746..3625116) Nitrosococcus halophilus Nc4 8918536 YP_003528936.1 CDS Nhal_3525 NC_013960.1 3625121 3626191 R KEGG: noc:Noc_0224 alanine racemase region; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase complement(3625121..3626191) Nitrosococcus halophilus Nc4 8918537 YP_003528937.1 CDS Nhal_3526 NC_013960.1 3626244 3627644 R KEGG: noc:Noc_0223 DnaB helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase; SMART: ATPase AAA; replicative DNA helicase complement(3626244..3627644) Nitrosococcus halophilus Nc4 8918538 YP_003528938.1 CDS Nhal_3527 NC_013960.1 3627726 3628178 R TIGRFAM: ribosomal protein L9; PFAM: ribosomal protein L9; KEGG: noc:Noc_0222 ribosomal protein L9; 50S ribosomal protein L9 complement(3627726..3628178) Nitrosococcus halophilus Nc4 8918539 YP_003528939.1 CDS Nhal_3528 NC_013960.1 3628286 3628510 R TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; KEGG: noc:Noc_0221 ribosomal protein S18; 30S ribosomal protein S18 complement(3628286..3628510) Nitrosococcus halophilus Nc4 8918540 YP_003528940.1 CDS Nhal_3529 NC_013960.1 3628679 3629125 R TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6; KEGG: noc:Noc_0220 ribosomal protein S6; 30S ribosomal protein S6 complement(3628679..3629125) Nitrosococcus halophilus Nc4 8918541 YP_003528941.1 CDS Nhal_3530 NC_013960.1 3629262 3630011 R TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: noc:Noc_0219 RNA methyltransferase TrmH, group 3; TrmH family RNA methyltransferase complement(3629262..3630011) Nitrosococcus halophilus Nc4 8918542 YP_003528942.1 CDS Nhal_3531 NC_013960.1 3630346 3631140 R hypothetical protein complement(3630346..3631140) Nitrosococcus halophilus Nc4 8918543 YP_003528943.1 CDS Nhal_3532 NC_013960.1 3631425 3633515 D KEGG: noc:Noc_2452 multisensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; hypothetical protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein; PAS sensor protein 3631425..3633515 Nitrosococcus halophilus Nc4 8918544 YP_003528944.1 CDS Nhal_3533 NC_013960.1 3633517 3633891 D PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: slo:Shew_3240 two component LuxR family transcriptional regulator; response regulator receiver 3633517..3633891 Nitrosococcus halophilus Nc4 8918545 YP_003528945.1 CDS Nhal_3534 NC_013960.1 3633904 3635856 R PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: noc:Noc_0218 alpha amylase, catalytic region; alpha amylase catalytic subunit complement(3633904..3635856) Nitrosococcus halophilus Nc4 8918546 YP_003528946.1 CDS Nhal_3535 NC_013960.1 3635892 3636386 D PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: pca:Pcar_3010 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 3635892..3636386 Nitrosococcus halophilus Nc4 8918547 YP_003528947.1 CDS Nhal_3536 NC_013960.1 3636386 3638557 D PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: dat:HRM2_42990 PpsA8; pyruvate phosphate dikinase PEP/pyruvate-binding protein 3636386..3638557 Nitrosococcus halophilus Nc4 8918548 YP_003528948.1 CDS Nhal_3537 NC_013960.1 3638793 3640016 D PFAM: FAD dependent oxidoreductase; KEGG: bpy:Bphyt_0284 FAD dependent oxidoreductase; FAD dependent oxidoreductase 3638793..3640016 Nitrosococcus halophilus Nc4 8918549 YP_003528949.1 CDS Nhal_3538 NC_013960.1 3640116 3640781 R PFAM: endonuclease V; KEGG: noc:Noc_0217 deoxyribonuclease V; deoxyribonuclease V complement(3640116..3640781) Nitrosococcus halophilus Nc4 8918550 YP_003528950.1 CDS Nhal_3539 NC_013960.1 3640830 3641345 D TIGRFAM: molybdenum cofactor biosynthesis protein B; molybdenum cofactor synthesis protein; PFAM: molybdopterin binding domain; KEGG: mca:MCA2156 molybdenum cofactor biosynthesis protein B; molybdenum cofactor biosynthesis protein B 3640830..3641345 Nitrosococcus halophilus Nc4 8918551 YP_003528951.1 CDS Nhal_3540 NC_013960.1 3641335 3641583 D PFAM: glutaredoxin 2; KEGG: noc:Noc_0216 glutaredoxin 2; glutaredoxin 2 3641335..3641583 Nitrosococcus halophilus Nc4 8918552 YP_003528952.1 CDS Nhal_3541 NC_013960.1 3641626 3642474 R PFAM: protein of unknown function DUF1568; KEGG: tbd:Tbd_1967 hypothetical protein; hypothetical protein complement(3641626..3642474) Nitrosococcus halophilus Nc4 8918553 YP_003528953.1 CDS Nhal_3542 NC_013960.1 3642567 3642905 R KEGG: noc:Noc_0979 hypothetical protein; hypothetical protein complement(3642567..3642905) Nitrosococcus halophilus Nc4 8918554 YP_003528954.1 CDS Nhal_3543 NC_013960.1 3643039 3643452 R KEGG: csa:Csal_1035 hypothetical protein; hypothetical protein complement(3643039..3643452) Nitrosococcus halophilus Nc4 8918555 YP_003528955.1 CDS Nhal_3544 NC_013960.1 3643744 3645252 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: tgr:Tgr7_0021 histidine kinase; ATP-binding region ATPase domain-containing protein 3643744..3645252 Nitrosococcus halophilus Nc4 8918556 YP_003528956.1 CDS Nhal_3545 NC_013960.1 3645227 3646624 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: psa:PST_0364 mutant NtrC-like activator; Fis family transcriptional regulator 3645227..3646624 Nitrosococcus halophilus Nc4 8918557 YP_003528957.1 CDS Nhal_3546 NC_013960.1 3646671 3647081 R KEGG: noc:Noc_1063 hypothetical protein; hypothetical protein complement(3646671..3647081) Nitrosococcus halophilus Nc4 8918558 YP_003528958.1 CDS Nhal_3548 NC_013960.1 3650027 3652318 R PFAM: CHASE2 domain protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: noc:Noc_1062 adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain-containing protein complement(3650027..3652318) Nitrosococcus halophilus Nc4 8918560 YP_003528959.1 CDS Nhal_3549 NC_013960.1 3652437 3653081 D PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: noc:Noc_1061 Crp family transcriptional regulator; cyclic nucleotide-binding protein 3652437..3653081 Nitrosococcus halophilus Nc4 8918561 YP_003528960.1 CDS Nhal_3550 NC_013960.1 3653261 3653719 D PFAM: pentapeptide repeat protein; KEGG: noc:Noc_1060 pentapeptide repeat-containing protein; pentapeptide repeat-containing protein 3653261..3653719 Nitrosococcus halophilus Nc4 8918562 YP_003528961.1 CDS Nhal_3551 NC_013960.1 3653832 3654317 D KEGG: noc:Noc_1059 hypothetical protein; hypothetical protein 3653832..3654317 Nitrosococcus halophilus Nc4 8918563 YP_003528962.1 CDS Nhal_3552 NC_013960.1 3654404 3655726 R KEGG: cps:CPS_3313 lipoprotein; lipoprotein complement(3654404..3655726) Nitrosococcus halophilus Nc4 8918564 YP_003528963.1 CDS Nhal_3553 NC_013960.1 3656014 3658008 D PFAM: glucose sorbosone dehydrogenase; NHL repeat containing protein; SMP-30/gluconolaconase/LRE domain protein; KEGG: mfa:Mfla_0535 NHL repeat-containing protein; glucose sorbosone dehydrogenase 3656014..3658008 Nitrosococcus halophilus Nc4 8918565 YP_003528964.1 CDS Nhal_3554 NC_013960.1 3658063 3658878 D PFAM: protein of unknown function DUF548; KEGG: noc:Noc_1058 hypothetical protein; hypothetical protein 3658063..3658878 Nitrosococcus halophilus Nc4 8918566 YP_003528965.1 CDS Nhal_3555 NC_013960.1 3658993 3659451 D KEGG: noc:Noc_1057 hypothetical protein; hypothetical protein 3658993..3659451 Nitrosococcus halophilus Nc4 8918567 YP_003528966.1 CDS Nhal_3556 NC_013960.1 3659492 3659833 D PFAM: CutA1 divalent ion tolerance protein; KEGG: noc:Noc_1056 CutA1 divalent ion tolerance protein; CutA1 divalent ion tolerance protein 3659492..3659833 Nitrosococcus halophilus Nc4 8918568 YP_003528967.1 CDS Nhal_3557 NC_013960.1 3659830 3661713 D PFAM: cytochrome C biogenesis protein transmembrane region; KEGG: noc:Noc_1055 cytochrome C biogenesis protein, transmembrane region; cytochrome C biogenesis protein transmembrane region 3659830..3661713 Nitrosococcus halophilus Nc4 8918569 YP_003528968.1 CDS Nhal_3558 NC_013960.1 3661710 3662231 D PFAM: redoxin; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: noc:Noc_1054 thioredoxin; redoxin 3661710..3662231 Nitrosococcus halophilus Nc4 8918570 YP_003528969.1 CDS Nhal_3559 NC_013960.1 3662453 3662896 D KEGG: noc:Noc_1053 3-dehydroquinate dehydratase; TIGRFAM: 3-dehydroquinate dehydratase, type II; PFAM: dehydroquinase class II; 3-dehydroquinate dehydratase, type II 3662453..3662896 Nitrosococcus halophilus Nc4 8918571 YP_003528970.1 CDS Nhal_3560 NC_013960.1 3662951 3663397 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: noc:Noc_1052 acetyl-CoA biotin carboxyl carrier; acetyl-CoA carboxylase, biotin carboxyl carrier protein 3662951..3663397 Nitrosococcus halophilus Nc4 8918572 YP_003528971.1 CDS Nhal_3561 NC_013960.1 3663402 3664742 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; carbamoyl-phosphate synthetase large chain domain protein; KEGG: noc:Noc_1051 acetyl-CoA carboxylase, biotin carboxylase; acetyl-CoA carboxylase, biotin carboxylase 3663402..3664742 Nitrosococcus halophilus Nc4 8918573 YP_003528972.1 CDS Nhal_3562 NC_013960.1 3664760 3665638 D TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase; KEGG: noc:Noc_1050 ribosomal protein L11 methyltransferase; 50S ribosomal protein L11 methyltransferase 3664760..3665638 Nitrosococcus halophilus Nc4 8918574 YP_003528973.1 CDS Nhal_3563 NC_013960.1 3665768 3666091 D PFAM: helix-turn-helix Fis-type; KEGG: noc:Noc_1049 helix-turn-helix, fis-type; helix-turn-helix Fis-type 3665768..3666091 Nitrosococcus halophilus Nc4 8918575 YP_003528974.1 CDS Nhal_3564 NC_013960.1 3666182 3667750 D KEGG: noc:Noc_1048 IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; SMART: AICARFT/IMPCHase bienzyme formylation region; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 3666182..3667750 Nitrosococcus halophilus Nc4 8918576 YP_003528975.1 CDS Nhal_3565 NC_013960.1 3667904 3670738 D PFAM: adenylate cyclase class-I; KEGG: pmy:Pmen_0273 adenylate cyclase; adenylate cyclase 3667904..3670738 Nitrosococcus halophilus Nc4 8918577 YP_003528976.1 CDS Nhal_3566 NC_013960.1 3670807 3671838 D KEGG: noc:Noc_1047 N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: semialdehyde dehydrogenase NAD - binding; semialdehyde dehydrogenase dimerisation region; N-acetyl-gamma-glutamyl-phosphate reductase 3670807..3671838 Nitrosococcus halophilus Nc4 8918578 YP_003528977.1 CDS Nhal_3567 NC_013960.1 3671877 3672599 D KEGG: noc:Noc_1046 hypothetical protein; hypothetical protein 3671877..3672599 Nitrosococcus halophilus Nc4 8918579 YP_003528978.1 CDS Nhal_3568 NC_013960.1 3672655 3673104 D PFAM: protein of unknown function DUF583; KEGG: noc:Noc_1045 hypothetical protein; hypothetical protein 3672655..3673104 Nitrosococcus halophilus Nc4 8918580 YP_003528979.1 CDS Nhal_3569 NC_013960.1 3673167 3673526 D TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: noc:Noc_1044 HesB/YadR/YfhF; iron-sulfur cluster assembly accessory protein 3673167..3673526 Nitrosococcus halophilus Nc4 8918581 YP_003528980.1 CDS Nhal_3570 NC_013960.1 3673618 3673932 D KEGG: noc:Noc_1043 Fe2-S2-type ferredoxin; Fe2-S2-type ferredoxin 3673618..3673932 Nitrosococcus halophilus Nc4 8918582 YP_003528981.1 CDS Nhal_3571 NC_013960.1 3673960 3674826 D KEGG: noc:Noc_1042 squalene/phytoene synthase; TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; squalene synthase HpnD 3673960..3674826 Nitrosococcus halophilus Nc4 8918583 YP_003528982.1 CDS Nhal_3572 NC_013960.1 3674851 3675651 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; KEGG: noc:Noc_1041 pseudouridine synthase, Rsu; RNA-binding S4 domain-containing protein complement(3674851..3675651) Nitrosococcus halophilus Nc4 8918584 YP_003528983.1 CDS Nhal_3573 NC_013960.1 3675679 3676347 R TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: noc:Noc_1040 chromosome segregation and condensation protein ScpB; segregation and condensation protein B complement(3675679..3676347) Nitrosococcus halophilus Nc4 8918585 YP_003528984.1 CDS Nhal_3574 NC_013960.1 3676344 3677153 R PFAM: chromosome segregation and condensation protein ScpA; KEGG: noc:Noc_1039 chromosome segregation and condensation protein ScpA; chromosome segregation and condensation protein ScpA complement(3676344..3677153) Nitrosococcus halophilus Nc4 8918586 YP_003528985.1 CDS Nhal_3575 NC_013960.1 3677206 3678423 R KEGG: noc:Noc_1038 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; tryptophanyl-tRNA synthetase complement(3677206..3678423) Nitrosococcus halophilus Nc4 8918587 YP_003528986.1 CDS Nhal_3576 NC_013960.1 3678446 3679147 R PFAM: peptidase M50; KEGG: noc:Noc_1037 peptidase M50; peptidase M50 complement(3678446..3679147) Nitrosococcus halophilus Nc4 8918588 YP_003528987.1 CDS Nhal_3577 NC_013960.1 3679215 3680504 R KEGG: noc:Noc_1036 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like; seryl-tRNA synthetase complement(3679215..3680504) Nitrosococcus halophilus Nc4 8918589 YP_003528988.1 CDS Nhal_3578 NC_013960.1 3680497 3680631 R KEGG: noc:Noc_1035 hypothetical protein; hypothetical protein complement(3680497..3680631) Nitrosococcus halophilus Nc4 8918590 YP_003528989.1 CDS Nhal_3579 NC_013960.1 3680740 3681159 D KEGG: sat:SYN_03187 hypothetical protein; hypothetical protein 3680740..3681159 Nitrosococcus halophilus Nc4 8918591 YP_003528990.1 CDS Nhal_3580 NC_013960.1 3681168 3681734 D PFAM: NLP/P60 protein; KEGG: nmu:Nmul_A1592 NLP/P60; NLP/P60 protein 3681168..3681734 Nitrosococcus halophilus Nc4 8918592 YP_003528991.1 CDS Nhal_3581 NC_013960.1 3681721 3682038 D PFAM: small multidrug resistance protein; KEGG: noc:Noc_2235 small multidrug resistance protein; small multidrug resistance protein 3681721..3682038 Nitrosococcus halophilus Nc4 8918593 YP_003528992.1 CDS Nhal_3582 NC_013960.1 3682043 3682783 D PFAM: TrkA-C domain protein; KEGG: dvm:DvMF_0453 TrkA-N domain protein; TrkA-C domain-containing protein 3682043..3682783 Nitrosococcus halophilus Nc4 8918594 YP_003528993.1 CDS Nhal_3583 NC_013960.1 3682780 3683469 D PFAM: glutamine amidotransferase class-I; KEGG: noc:Noc_2237 glutamine amidotransferase class-I; glutamine amidotransferase class-I 3682780..3683469 Nitrosococcus halophilus Nc4 8918595 YP_003528994.1 CDS Nhal_3584 NC_013960.1 3683466 3684689 R TIGRFAM: threonine dehydratase; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; amino acid-binding ACT domain protein; KEGG: dac:Daci_0116 threonine dehydratase; threonine dehydratase complement(3683466..3684689) Nitrosococcus halophilus Nc4 8918596 YP_003528995.1 CDS Nhal_3585 NC_013960.1 3684818 3685756 D KEGG: noc:Noc_2220 hypothetical protein; hypothetical protein 3684818..3685756 Nitrosococcus halophilus Nc4 8918597 YP_003528996.1 CDS Nhal_3586 NC_013960.1 3685759 3687792 D PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: noc:Noc_2221 peptidase S15; peptidase S15 3685759..3687792 Nitrosococcus halophilus Nc4 8918598 YP_003528997.1 CDS Nhal_3587 NC_013960.1 3687834 3688886 R PFAM: D-alanine--D-alanine ligase domain protein; protein of unknown function DUF201; KEGG: noc:Noc_2222 hypothetical protein; D-alanine--D-alanine ligase complement(3687834..3688886) Nitrosococcus halophilus Nc4 8918599 YP_003528998.1 CDS Nhal_3588 NC_013960.1 3689004 3689648 D PFAM: protein of unknown function DUF107; KEGG: noc:Noc_2223 hypothetical protein; hypothetical protein 3689004..3689648 Nitrosococcus halophilus Nc4 8918600 YP_003528999.1 CDS Nhal_3589 NC_013960.1 3689656 3691689 R PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; TrkA-C domain protein; KEGG: tbd:Tbd_0539 antiporter-2, CPA2 family monovalent cation/proton antiporter; sodium/hydrogen exchanger complement(3689656..3691689) Nitrosococcus halophilus Nc4 8918601 YP_003529000.1 CDS Nhal_3590 NC_013960.1 3691778 3693811 D TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain IV; protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: noc:Noc_2225 elongation factor G; small GTP-binding protein 3691778..3693811 Nitrosococcus halophilus Nc4 8918602 YP_003529001.1 CDS Nhal_3591 NC_013960.1 3693901 3694242 D PFAM: transcriptional coactivator/pterin dehydratase; KEGG: noc:Noc_2226 transcriptional coactivator/pterin dehydratase; transcriptional coactivator/pterin dehydratase 3693901..3694242 Nitrosococcus halophilus Nc4 8918603 YP_003529002.1 CDS Nhal_3592 NC_013960.1 3694214 3694945 R KEGG: noc:Noc_2227 membrane-bound metal-dependent hydrolase; membrane-bound metal-dependent hydrolase complement(3694214..3694945) Nitrosococcus halophilus Nc4 8918604 YP_003529003.1 CDS Nhal_3593 NC_013960.1 3694954 3695757 D PFAM: protein of unknown function DUF1499; KEGG: noc:Noc_2228 hypothetical protein; hypothetical protein 3694954..3695757 Nitrosococcus halophilus Nc4 8918605 YP_003529004.1 CDS Nhal_3594 NC_013960.1 3695820 3699434 R KEGG: noc:Noc_2229 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; protein of unknown function DUF1631; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; diguanylate cyclase complement(3695820..3699434) Nitrosococcus halophilus Nc4 8918606 YP_003529005.1 CDS Nhal_3595 NC_013960.1 3699721 3700449 D KEGG: noc:Noc_2230 hypothetical protein; hypothetical protein 3699721..3700449 Nitrosococcus halophilus Nc4 8918607 YP_003529006.1 CDS Nhal_3596 NC_013960.1 3700468 3701457 D PFAM: polyprenyl synthetase; KEGG: noc:Noc_2231 polyprenyl synthetase; polyprenyl synthetase 3700468..3701457 Nitrosococcus halophilus Nc4 8918608 YP_003529007.1 CDS Nhal_3597 NC_013960.1 3701467 3702162 R PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: noc:Noc_2232 UbiE/COQ5 methyltransferase; type 11 methyltransferase complement(3701467..3702162) Nitrosococcus halophilus Nc4 8918609 YP_003529008.1 CDS Nhal_3598 NC_013960.1 3702338 3702610 D KEGG: noc:Noc_2233 hypothetical protein; hypothetical protein 3702338..3702610 Nitrosococcus halophilus Nc4 8918610 YP_003529009.1 CDS Nhal_3599 NC_013960.1 3702954 3703691 D PFAM: integral membrane protein TerC; KEGG: noc:Noc_2234 integral membrane protein TerC; integral membrane protein TerC 3702954..3703691 Nitrosococcus halophilus Nc4 8918611 YP_003529010.1 CDS Nhal_3600 NC_013960.1 3703713 3707261 R PFAM: MscS Mechanosensitive ion channel; KEGG: noc:Noc_2151 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS complement(3703713..3707261) Nitrosococcus halophilus Nc4 8918612 YP_003529011.1 CDS Nhal_3601 NC_013960.1 3707296 3708513 R PFAM: integral membrane protein TerC; KEGG: noc:Noc_2152 integral membrane protein TerC; integral membrane protein TerC complement(3707296..3708513) Nitrosococcus halophilus Nc4 8918613 YP_003529012.1 CDS Nhal_3602 NC_013960.1 3709080 3710210 R PFAM: radical SAM protein; KEGG: mca:MCA0073 pyruvate formate lyase-activating enzyme; radical SAM protein complement(3709080..3710210) Nitrosococcus halophilus Nc4 8918614 YP_003529013.1 CDS Nhal_3603 NC_013960.1 3710330 3711115 D PFAM: protein of unknown function DUF52; KEGG: mca:MCA0072 hypothetical protein; hypothetical protein 3710330..3711115 Nitrosococcus halophilus Nc4 8918615 YP_003529014.1 CDS Nhal_3604 NC_013960.1 3711102 3711674 D PFAM: AMMECR1 domain protein; KEGG: mca:MCA0071 hypothetical protein; AMMECR1 domain-containing protein 3711102..3711674 Nitrosococcus halophilus Nc4 8918616 YP_003529015.1 CDS Nhal_3605 NC_013960.1 3711686 3712420 R PFAM: pentapeptide repeat protein; KEGG: noc:Noc_2153 pentapeptide repeat-containing protein; pentapeptide repeat-containing protein complement(3711686..3712420) Nitrosococcus halophilus Nc4 8918617 YP_003529016.1 CDS Nhal_3606 NC_013960.1 3712468 3712944 R KEGG: noc:Noc_2154 hypothetical protein; hypothetical protein complement(3712468..3712944) Nitrosococcus halophilus Nc4 8918618 YP_003529017.1 CDS Nhal_3607 NC_013960.1 3712988 3713827 R PFAM: OmpA/MotB domain protein; KEGG: tgr:Tgr7_1344 OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(3712988..3713827) Nitrosococcus halophilus Nc4 8918619 YP_003529018.1 CDS Nhal_3608 NC_013960.1 3713835 3714575 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: pau:PA14_45560 flagellar motor protein; MotA/TolQ/ExbB proton channel complement(3713835..3714575) Nitrosococcus halophilus Nc4 8918620 YP_003529019.1 CDS Nhal_3609 NC_013960.1 3714763 3715488 R TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; Sigma-70 region 4 type 2; KEGG: noc:Noc_2155 sigma28 (flagella); FliA/WhiG family RNA polymerase sigma factor complement(3714763..3715488) Nitrosococcus halophilus Nc4 8918621 YP_003529020.1 CDS Nhal_3610 NC_013960.1 3715485 3716402 R PFAM: cobyrinic acid ac-diamide synthase; KEGG: noc:Noc_2156 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase complement(3715485..3716402) Nitrosococcus halophilus Nc4 8918622 YP_003529021.1 CDS Nhal_3611 NC_013960.1 3716395 3717576 R PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: ATPase AAA; KEGG: noc:Noc_2157 flagellar biosynthesis regulator FlhF; GTP-binding signal recognition particle SRP54 G- domain-containing protein complement(3716395..3717576) Nitrosococcus halophilus Nc4 8918623 YP_003529022.1 CDS Nhal_3612 NC_013960.1 3717600 3719666 R TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: noc:Noc_2158 flagellar biosynthesis protein FlhA; flagellar biosynthesis protein FlhA complement(3717600..3719666) Nitrosococcus halophilus Nc4 8918624 YP_003529023.1 CDS Nhal_3613 NC_013960.1 3719789 3720922 R TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: noc:Noc_2159 flagellar biosynthetic protein FlhB; flagellar biosynthetic protein FlhB complement(3719789..3720922) Nitrosococcus halophilus Nc4 8918625 YP_003529024.1 CDS Nhal_3614 NC_013960.1 3720922 3721698 R TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: noc:Noc_2160 flagellar biosynthesis protein FliR; flagellar biosynthetic protein FliR complement(3720922..3721698) Nitrosococcus halophilus Nc4 8918626 YP_003529025.1 CDS Nhal_3615 NC_013960.1 3721703 3721972 R TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: noc:Noc_2161 flagellar biosynthesis protein FliQ; flagellar biosynthetic protein FliQ complement(3721703..3721972) Nitrosococcus halophilus Nc4 8918627 YP_003529026.1 CDS Nhal_3616 NC_013960.1 3721969 3722778 R TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; KEGG: noc:Noc_2162 flagellar biosynthesis protein FliP; flagellar biosynthetic protein FliP complement(3721969..3722778) Nitrosococcus halophilus Nc4 8918628 YP_003529027.1 CDS Nhal_3617 NC_013960.1 3722775 3723266 R PFAM: flagellar biosynthesis protein FliO; KEGG: noc:Noc_2163 flagellar biosynthesis protein, FliO; flagellar biosynthesis protein FliO complement(3722775..3723266) Nitrosococcus halophilus Nc4 8918629 YP_003529028.1 CDS Nhal_3618 NC_013960.1 3723263 3723721 R TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: noc:Noc_2164 surface presentation of antigens (SpoA) protein; flagellar motor switch protein FliN complement(3723263..3723721) Nitrosococcus halophilus Nc4 8918630 YP_003529029.1 CDS Nhal_3619 NC_013960.1 3723705 3724754 R TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; KEGG: noc:Noc_2165 flagellar motor switch protein FliM; flagellar motor switch protein FliM complement(3723705..3724754) Nitrosococcus halophilus Nc4 8918631 YP_003529030.1 CDS Nhal_3620 NC_013960.1 3724758 3725276 R PFAM: flagellar basal body-associated protein FliL; KEGG: noc:Noc_2166 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL complement(3724758..3725276) Nitrosococcus halophilus Nc4 8918632 YP_003529031.1 CDS Nhal_3621 NC_013960.1 3725622 3726671 R PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: noc:Noc_2167 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(3725622..3726671) Nitrosococcus halophilus Nc4 8918633 YP_003529032.1 CDS Nhal_3622 NC_013960.1 3726714 3727799 R PFAM: glycosyl transferase family 2; KEGG: noc:Noc_2168 glycosyl transferase; family 2 glycosyl transferase complement(3726714..3727799) Nitrosococcus halophilus Nc4 8918634 YP_003529033.1 CDS Nhal_3623 NC_013960.1 3727936 3730404 R PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: noc:Noc_2169 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8 and S53 subtilisin kexin sedolisin complement(3727936..3730404) Nitrosococcus halophilus Nc4 8918635 YP_003529034.1 CDS Nhal_3624 NC_013960.1 3730546 3732411 R KEGG: noc:Noc_2170 hypothetical protein; hypothetical protein complement(3730546..3732411) Nitrosococcus halophilus Nc4 8918636 YP_003529035.1 CDS Nhal_3625 NC_013960.1 3732657 3734981 D PFAM: glycosyl transferase group 1; KEGG: noc:Noc_2171 hypothetical protein; group 1 glycosyl transferase 3732657..3734981 Nitrosococcus halophilus Nc4 8918637 YP_003529036.1 CDS Nhal_3626 NC_013960.1 3734978 3737098 R PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: noc:Noc_2172 hypothetical protein; haloacid dehalogenase complement(3734978..3737098) Nitrosococcus halophilus Nc4 8918638 YP_003529037.1 CDS Nhal_3627 NC_013960.1 3737124 3738335 R KEGG: noc:Noc_2174 hypothetical protein; hypothetical protein complement(3737124..3738335) Nitrosococcus halophilus Nc4 8918639 YP_003529038.1 CDS Nhal_3628 NC_013960.1 3738343 3739110 R KEGG: noc:Noc_2175 hypothetical protein; hypothetical protein complement(3738343..3739110) Nitrosococcus halophilus Nc4 8918640 YP_003529039.1 CDS Nhal_3629 NC_013960.1 3739136 3740452 R PFAM: glycosyl transferase family 2; KEGG: noc:Noc_2176 glycosyl transferase; family 2 glycosyl transferase complement(3739136..3740452) Nitrosococcus halophilus Nc4 8918641 YP_003529040.1 CDS Nhal_3630 NC_013960.1 3740488 3741408 R TIGRFAM: rhamnosyltransferase; PFAM: glycosyl transferase family 2; KEGG: noc:Noc_2177 rhamnosyltransferase; rhamnosyltransferase complement(3740488..3741408) Nitrosococcus halophilus Nc4 8918642 YP_003529041.1 CDS Nhal_3631 NC_013960.1 3741533 3745246 R PFAM: glycosyl transferase family 2; methyltransferase type 12; methyltransferase type 11; glycosyl transferase group 1; methionine biosynthesis MetW protein; KEGG: noc:Noc_2178 glycosyl transferase family protein; family 2 glycosyl transferase complement(3741533..3745246) Nitrosococcus halophilus Nc4 8918643 YP_003529042.1 CDS Nhal_3632 NC_013960.1 3745480 3746076 D PFAM: methyltransferase type 11; KEGG: vei:Veis_0634 methyltransferase type 11; type 11 methyltransferase 3745480..3746076 Nitrosococcus halophilus Nc4 8918644 YP_003529043.1 CDS Nhal_3633 NC_013960.1 3746200 3747099 R KEGG: noc:Noc_2180 hypothetical protein; hypothetical protein complement(3746200..3747099) Nitrosococcus halophilus Nc4 8918645 YP_003529044.1 CDS Nhal_3634 NC_013960.1 3747112 3748341 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_2181 ABC transporter ATPase; ABC transporter complement(3747112..3748341) Nitrosococcus halophilus Nc4 8918646 YP_003529045.1 CDS Nhal_3635 NC_013960.1 3748426 3749259 R PFAM: ABC transporter; KEGG: noc:Noc_2182 ABC polysaccharide/polyol phosphate export systems, inner membrane subunit; ABC transporter complement(3748426..3749259) Nitrosococcus halophilus Nc4 8918647 YP_003529046.1 CDS Nhal_3636 NC_013960.1 3749243 3749380 R hypothetical protein complement(3749243..3749380) Nitrosococcus halophilus Nc4 8918648 YP_003529047.1 CDS Nhal_3637 NC_013960.1 3749377 3749583 R PFAM: protein of unknown function UPF0150; KEGG: hpa:HPAG1_0204 hypothetical protein; hypothetical protein complement(3749377..3749583) Nitrosococcus halophilus Nc4 8918649 YP_003529048.1 CDS Nhal_3638 NC_013960.1 3749817 3750011 D KEGG: maq:Maqu_2253 hypothetical protein; hypothetical protein 3749817..3750011 Nitrosococcus halophilus Nc4 8918650 YP_003529049.1 CDS Nhal_3639 NC_013960.1 3750077 3750391 D hypothetical protein 3750077..3750391 Nitrosococcus halophilus Nc4 8918651 YP_003529050.1 CDS Nhal_3640 NC_013960.1 3750504 3750632 D hypothetical protein 3750504..3750632 Nitrosococcus halophilus Nc4 8918652 YP_003529051.1 CDS Nhal_3641 NC_013960.1 3750662 3751816 D TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0401 transposase; transposase, IS605 OrfB family 3750662..3751816 Nitrosococcus halophilus Nc4 8918653 YP_003529052.1 CDS Nhal_3642 NC_013960.1 3752079 3752357 D TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: CopG domain protein DNA-binding domain protein; protein of unknown function UPF0156; KEGG: bbt:BBta_4866 hypothetical protein; addiction module antidote protein 3752079..3752357 Nitrosococcus halophilus Nc4 8918654 YP_003529053.1 CDS Nhal_3643 NC_013960.1 3752379 3752666 D PFAM: plasmid stabilization system; KEGG: rpc:RPC_2216 plasmid stabilization system protein; plasmid stabilization system 3752379..3752666 Nitrosococcus halophilus Nc4 8918655 YP_003529054.1 CDS Nhal_3644 NC_013960.1 3753133 3754095 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: noc:Noc_0767 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(3753133..3754095) Nitrosococcus halophilus Nc4 8918656 YP_003529055.1 CDS Nhal_3645 NC_013960.1 3754733 3755347 R KEGG: noc:Noc_0765 hypothetical protein; hypothetical protein complement(3754733..3755347) Nitrosococcus halophilus Nc4 8918657 YP_003529056.1 CDS Nhal_3646 NC_013960.1 3755644 3757062 R KEGG: noc:Noc_0764 hypothetical protein; hypothetical protein complement(3755644..3757062) Nitrosococcus halophilus Nc4 8918658 YP_003529057.1 CDS Nhal_3647 NC_013960.1 3757205 3757642 R KEGG: noc:Noc_0763 hypothetical protein; hypothetical protein complement(3757205..3757642) Nitrosococcus halophilus Nc4 8918659 YP_003529058.1 CDS Nhal_3648 NC_013960.1 3757912 3760215 R TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: noc:Noc_0761 general secretion pathway protein D; general secretion pathway protein D complement(3757912..3760215) Nitrosococcus halophilus Nc4 8918660 YP_003529059.1 CDS Nhal_3649 NC_013960.1 3760413 3761012 R KEGG: noc:Noc_0760 hypothetical protein; hypothetical protein complement(3760413..3761012) Nitrosococcus halophilus Nc4 8918661 YP_003529060.1 CDS Nhal_3650 NC_013960.1 3760993 3761598 R KEGG: noc:Noc_0759 general secretion pathway protein; general secretion pathway protein complement(3760993..3761598) Nitrosococcus halophilus Nc4 8918662 YP_003529061.1 CDS Nhal_3651 NC_013960.1 3761595 3762671 R PFAM: fimbrial assembly family protein; KEGG: noc:Noc_0758 general secretion pathway protein L; fimbrial assembly family protein complement(3761595..3762671) Nitrosococcus halophilus Nc4 8918663 YP_003529062.1 CDS Nhal_3652 NC_013960.1 3763077 3763961 R PFAM: general secretion pathway protein K; KEGG: noc:Noc_0757 general secretion pathway protein K; general secretion pathway protein K complement(3763077..3763961) Nitrosococcus halophilus Nc4 8918664 YP_003529063.1 CDS Nhal_3653 NC_013960.1 3763974 3764693 R KEGG: noc:Noc_0756 general secretion pathway protein J; general secretion pathway protein J complement(3763974..3764693) Nitrosococcus halophilus Nc4 8918665 YP_003529064.1 CDS Nhal_3654 NC_013960.1 3764842 3767034 D SMART: hypothetical protein; KEGG: noc:Noc_0755 hypothetical protein; hypothetical protein 3764842..3767034 Nitrosococcus halophilus Nc4 8918666 YP_003529065.1 CDS Nhal_3655 NC_013960.1 3767073 3768512 D KEGG: noc:Noc_0754 hypothetical protein; hypothetical protein 3767073..3768512 Nitrosococcus halophilus Nc4 8918667 YP_003529066.1 CDS Nhal_3656 NC_013960.1 3768632 3769030 R KEGG: noc:Noc_0753 hypothetical protein; hypothetical protein complement(3768632..3769030) Nitrosococcus halophilus Nc4 8918668 YP_003529067.1 CDS Nhal_3657 NC_013960.1 3769023 3769724 R PFAM: glycosyl transferase family 2; KEGG: noc:Noc_0752 glycosyl transferase; family 2 glycosyl transferase complement(3769023..3769724) Nitrosococcus halophilus Nc4 8918669 YP_003529068.1 CDS Nhal_3658 NC_013960.1 3769964 3770293 R PFAM: cytochrome C class I; KEGG: noc:Noc_0751 cytochrome c, class I; cytochrome C class I complement(3769964..3770293) Nitrosococcus halophilus Nc4 8918670 YP_003529069.1 CDS Nhal_3659 NC_013960.1 3770636 3771727 R PFAM: glycosyl transferase group 1; KEGG: noc:Noc_0750 glycosyl transferase, group 1; group 1 glycosyl transferase complement(3770636..3771727) Nitrosococcus halophilus Nc4 8918671 YP_003529070.1 CDS Nhal_3660 NC_013960.1 3771795 3775718 R PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: pfl:PFL_5493 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase complement(3771795..3775718) Nitrosococcus halophilus Nc4 8918672 YP_003529071.1 CDS Nhal_3661 NC_013960.1 3775937 3777022 R KEGG: pat:Patl_3219 hypothetical protein; hypothetical protein complement(3775937..3777022) Nitrosococcus halophilus Nc4 8918673 YP_003529072.1 CDS Nhal_3663 NC_013960.1 3777527 3777865 R hypothetical protein complement(3777527..3777865) Nitrosococcus halophilus Nc4 8918675 YP_003529073.1 CDS Nhal_3664 NC_013960.1 3778231 3778332 D hypothetical protein 3778231..3778332 Nitrosococcus halophilus Nc4 8918676 YP_003529074.1 CDS Nhal_3666 NC_013960.1 3778692 3779864 D KEGG: conserved hypothetical protein; hypothetical protein 3778692..3779864 Nitrosococcus halophilus Nc4 8918678 YP_003529075.1 CDS Nhal_3668 NC_013960.1 3780279 3780404 R hypothetical protein complement(3780279..3780404) Nitrosococcus halophilus Nc4 8918680 YP_003529076.1 CDS Nhal_3669 NC_013960.1 3780413 3781138 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dol:Dole_1285 ABC transporter-related protein; ABC transporter complement(3780413..3781138) Nitrosococcus halophilus Nc4 8918681 YP_003529077.1 CDS Nhal_3670 NC_013960.1 3781135 3781917 R PFAM: ABC transporter; KEGG: dol:Dole_1284 ABC-2 type transporter; ABC transporter complement(3781135..3781917) Nitrosococcus halophilus Nc4 8918682 YP_003529078.1 CDS Nhal_3671 NC_013960.1 3782330 3783550 R PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_2583 glycosyl transferase family 2; family 2 glycosyl transferase complement(3782330..3783550) Nitrosococcus halophilus Nc4 8918683 YP_003529079.1 CDS Nhal_3672 NC_013960.1 3783564 3784505 R PFAM: glycosyl transferase family 2; KEGG: maq:Maqu_2635 glycosyl transferase; family 2 glycosyl transferase complement(3783564..3784505) Nitrosococcus halophilus Nc4 8918684 YP_003529080.1 CDS Nhal_3673 NC_013960.1 3784540 3786288 R PFAM: methyltransferase type 12; KEGG: maq:Maqu_2635 glycosyl transferase; type 12 methyltransferase complement(3784540..3786288) Nitrosococcus halophilus Nc4 8918685 YP_003529081.1 CDS Nhal_3674 NC_013960.1 3786285 3786977 R KEGG: maq:Maqu_2636 hypothetical protein; hypothetical protein complement(3786285..3786977) Nitrosococcus halophilus Nc4 8918686 YP_003529082.1 CDS Nhal_3675 NC_013960.1 3786982 3787707 R PFAM: methyltransferase type 12; KEGG: cps:CPS_2928 hypothetical protein; type 12 methyltransferase complement(3786982..3787707) Nitrosococcus halophilus Nc4 8918687 YP_003529083.1 CDS Nhal_3676 NC_013960.1 3787676 3788122 R KEGG: dac:Daci_1310 hypothetical protein; hypothetical protein complement(3787676..3788122) Nitrosococcus halophilus Nc4 8918688 YP_003529084.1 CDS Nhal_3677 NC_013960.1 3788183 3788635 R KEGG: vei:Veis_0677 hypothetical protein; hypothetical protein complement(3788183..3788635) Nitrosococcus halophilus Nc4 8918689 YP_003529085.1 CDS Nhal_3678 NC_013960.1 3788640 3789566 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: aav:Aave_4147 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(3788640..3789566) Nitrosococcus halophilus Nc4 8918690 YP_003529086.1 CDS Nhal_3679 NC_013960.1 3789688 3791589 R KEGG: aav:Aave_4148 hypothetical protein; hypothetical protein complement(3789688..3791589) Nitrosococcus halophilus Nc4 8918691 YP_003529087.1 CDS Nhal_3680 NC_013960.1 3791947 3792147 R hypothetical protein complement(3791947..3792147) Nitrosococcus halophilus Nc4 8918692 YP_003529088.1 CDS Nhal_3681 NC_013960.1 3792349 3793803 D PFAM: glycine cleavage system P-protein; KEGG: noc:Noc_2547 glycine dehydrogenase subunit 2; glycine dehydrogenase 3792349..3793803 Nitrosococcus halophilus Nc4 8918693 YP_003529089.1 CDS Nhal_3682 NC_013960.1 3793800 3794165 D PFAM: diacylglycerol kinase; KEGG: tgr:Tgr7_2754 diacylglycerol kinase; diacylglycerol kinase 3793800..3794165 Nitrosococcus halophilus Nc4 8918694 YP_003529090.1 CDS Nhal_3683 NC_013960.1 3794601 3795533 D PFAM: PfkB domain protein; KEGG: noc:Noc_2548 carbohydrate kinase, PfkB; PfkB domain-containing protein 3794601..3795533 Nitrosococcus halophilus Nc4 8918695 YP_003529091.1 CDS Nhal_3684 NC_013960.1 3795521 3797605 R PFAM: protein of unknown function DUF255; KEGG: noc:Noc_2549 hypothetical protein; hypothetical protein complement(3795521..3797605) Nitrosococcus halophilus Nc4 8918696 YP_003529092.1 CDS Nhal_3685 NC_013960.1 3797763 3798728 D TIGRFAM: pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: noc:Noc_2550 pseudouridine synthase, RluD; pseudouridine synthase 3797763..3798728 Nitrosococcus halophilus Nc4 8918697 YP_003529093.1 CDS Nhal_3686 NC_013960.1 3798889 3799887 R PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: noc:Noc_2551 zinc-containing alcohol dehydrogenase superfamily protein; alcohol dehydrogenase zinc-binding domain-containing protein complement(3798889..3799887) Nitrosococcus halophilus Nc4 8918698 YP_003529094.1 CDS Nhal_3687 NC_013960.1 3799892 3801331 R TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_2552 NADH dehydrogenase subunit N; proton-translocating NADH-quinone oxidoreductase subunit N complement(3799892..3801331) Nitrosococcus halophilus Nc4 8918699 YP_003529095.1 CDS Nhal_3688 NC_013960.1 3801382 3802896 R KEGG: noc:Noc_2553 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M complement(3801382..3802896) Nitrosococcus halophilus Nc4 8918700 YP_003529096.1 CDS Nhal_3689 NC_013960.1 3802900 3804852 R KEGG: noc:Noc_2554 NADH-plastoquinone oxidoreductase, chain 5; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; proton-translocating NADH-quinone oxidoreductase subunit L complement(3802900..3804852) Nitrosococcus halophilus Nc4 8918701 YP_003529097.1 CDS Nhal_3690 NC_013960.1 3804858 3805163 R PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: noc:Noc_2555 NADH dehydrogenase subunit K; NADH-ubiquinone oxidoreductase chain 4L complement(3804858..3805163) Nitrosococcus halophilus Nc4 8918702 YP_003529098.1 CDS Nhal_3691 NC_013960.1 3805171 3805776 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: noc:Noc_2556 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 complement(3805171..3805776) Nitrosococcus halophilus Nc4 8918703 YP_003529099.1 CDS Nhal_3692 NC_013960.1 3805800 3806288 R KEGG: noc:Noc_2557 NADH dehydrogenase subunit I; TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; NADH-quinone oxidoreductase subunit I complement(3805800..3806288) Nitrosococcus halophilus Nc4 8918704 YP_003529100.1 CDS Nhal_3693 NC_013960.1 3806301 3807314 R PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: noc:Noc_2558 respiratory-chain NADH dehydrogenase, subunit 1; NADH dehydrogenase (quinone) complement(3806301..3807314) Nitrosococcus halophilus Nc4 8918705 YP_003529101.1 CDS Nhal_3694 NC_013960.1 3807319 3809706 R TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: molybdopterin oxidoreductase; ferredoxin; KEGG: noc:Noc_2559 NADH dehydrogenase subunit G; NADH-quinone oxidoreductase subunit G complement(3807319..3809706) Nitrosococcus halophilus Nc4 8918706 YP_003529102.1 CDS Nhal_3695 NC_013960.1 3809722 3811005 R KEGG: noc:Noc_2560 NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH-quinone oxidoreductase subunit F complement(3809722..3811005) Nitrosococcus halophilus Nc4 8918707 YP_003529103.1 CDS Nhal_3696 NC_013960.1 3811002 3811532 R TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: noc:Noc_2561 NADH dehydrogenase (ubiquinone), 24 kDa subunit; NADH-quinone oxidoreductase subunit E complement(3811002..3811532) Nitrosococcus halophilus Nc4 8918708 YP_003529104.1 CDS Nhal_3697 NC_013960.1 3811529 3812782 R KEGG: noc:Noc_2562 NADH dehydrogenase subunit D; TIGRFAM: NADH dehydrogenase I, D subunit; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; NADH dehydrogenase I subunit D complement(3811529..3812782) Nitrosococcus halophilus Nc4 8918709 YP_003529105.1 CDS Nhal_3698 NC_013960.1 3812775 3813470 R KEGG: noc:Noc_2563 NADH (or F420H2) dehydrogenase, subunit C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; NADH (or F420H2) dehydrogenase subunit C complement(3812775..3813470) Nitrosococcus halophilus Nc4 8918710 YP_003529106.1 CDS Nhal_3699 NC_013960.1 3813490 3813966 R KEGG: noc:Noc_2564 NADH dehydrogenase subunit B; TIGRFAM: NADH-quinone oxidoreductase subunit beta; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; NADH-quinone oxidoreductase subunit beta complement(3813490..3813966) Nitrosococcus halophilus Nc4 8918711 YP_003529107.1 CDS Nhal_3700 NC_013960.1 3813957 3814313 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: noc:Noc_2565 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 complement(3813957..3814313) Nitrosococcus halophilus Nc4 8918712 YP_003529108.1 CDS Nhal_3701 NC_013960.1 3814518 3814973 R TIGRFAM: preprotein translocase subunit SecG; PFAM: Preprotein translocase SecG subunit; KEGG: abo:ABO_0326 protein-export membrane protein; preprotein translocase subunit SecG complement(3814518..3814973) Nitrosococcus halophilus Nc4 8918714 YP_003529109.1 CDS Nhal_3702 NC_013960.1 3814983 3815735 R TIGRFAM: triosephosphate isomerase; PFAM: triosephosphate isomerase; KEGG: noc:Noc_2566 triosephosphate isomerase; triosephosphate isomerase complement(3814983..3815735) Nitrosococcus halophilus Nc4 8918715 YP_003529110.1 CDS Nhal_3703 NC_013960.1 3815841 3817187 R KEGG: noc:Noc_2567 phosphoglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucosamine mutase complement(3815841..3817187) Nitrosococcus halophilus Nc4 8918716 YP_003529111.1 CDS Nhal_3704 NC_013960.1 3817189 3818061 R KEGG: noc:Noc_2568 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase complement(3817189..3818061) Nitrosococcus halophilus Nc4 8918717 YP_003529112.1 CDS Nhal_3705 NC_013960.1 3818405 3818626 D KEGG: noc:Noc_3005 hypothetical protein; hypothetical protein 3818405..3818626 Nitrosococcus halophilus Nc4 8918718 YP_003529113.1 CDS Nhal_3706 NC_013960.1 3818657 3820576 R KEGG: noc:Noc_2569 peptidase M41, FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; ATP-dependent metalloprotease FtsH complement(3818657..3820576) Nitrosococcus halophilus Nc4 8918719 YP_003529114.1 CDS Nhal_3707 NC_013960.1 3820654 3821292 R PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: noc:Noc_2570 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ complement(3820654..3821292) Nitrosococcus halophilus Nc4 8918720 YP_003529115.1 CDS Nhal_3708 NC_013960.1 3821530 3822006 R TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: noc:Noc_2571 transcription elongation factor GreA; transcription elongation factor GreA complement(3821530..3822006) Nitrosococcus halophilus Nc4 8918721 YP_003529116.1 CDS Nhal_3709 NC_013960.1 3822003 3825224 R TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: carbamoyl-phosphate synthase L chain ATP-binding; protein of unknown function DUF201; phosphoribosylglycinamide synthetase; MGS domain protein; carbamoyl-phosphate synthetase large chain oligomerisation; carbamoyl-phosphate synthetase large chain domain protein; KEGG: noc:Noc_2572 carbamoyl-phosphate synthase, large subunit, glutamine-dependent; carbamoyl-phosphate synthase, large subunit complement(3822003..3825224) Nitrosococcus halophilus Nc4 8918722 YP_003529117.1 CDS Nhal_3710 NC_013960.1 3825305 3826492 R TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; KEGG: noc:Noc_2573 carbamoyl-phosphate synthase, small subunit; carbamoyl-phosphate synthase, small subunit complement(3825305..3826492) Nitrosococcus halophilus Nc4 8918723 YP_003529118.1 CDS Nhal_3711 NC_013960.1 3826580 3827674 D PFAM: delta-aminolevulinic acid dehydratase; KEGG: noc:Noc_2574 delta-aminolevulinic acid dehydratase; porphobilinogen synthase 3826580..3827674 Nitrosococcus halophilus Nc4 8918724 YP_003529119.1 CDS Nhal_3712 NC_013960.1 3827762 3828589 D TIGRFAM: shikimate 5-dehydrogenase; PFAM: shikimate dehydrogenase substrate binding domain protein; shikimate/quinate 5-dehydrogenase; KEGG: noc:Noc_2575 quinate/shikimate 5-dehydrogenase; shikimate 5-dehydrogenase 3827762..3828589 Nitrosococcus halophilus Nc4 8918725 YP_003529120.1 CDS Nhal_3713 NC_013960.1 3828820 3829131 R PFAM: protein of unknown function DUF710; KEGG: noc:Noc_2576 hypothetical protein; hypothetical protein complement(3828820..3829131) Nitrosococcus halophilus Nc4 8918727 YP_003529121.1 CDS Nhal_3714 NC_013960.1 3829128 3829337 R KEGG: noc:Noc_2577 hypothetical protein; hypothetical protein complement(3829128..3829337) Nitrosococcus halophilus Nc4 8918728 YP_003529122.1 CDS Nhal_3715 NC_013960.1 3829472 3830008 D KEGG: noc:Noc_2578 hypothetical protein; hypothetical protein 3829472..3830008 Nitrosococcus halophilus Nc4 8918729 YP_003529123.1 CDS Nhal_3716 NC_013960.1 3830034 3831365 D PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: noc:Noc_2579 peptidase M24; peptidase M24 3830034..3831365 Nitrosococcus halophilus Nc4 8918730 YP_003529124.1 CDS Nhal_3717 NC_013960.1 3831362 3832588 D TIGRFAM: 2-polyprenyl-6-methoxyphenol 4-hydroxylase; Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: noc:Noc_2580 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; 2-polyprenyl-6-methoxyphenol 4-hydroxylase 3831362..3832588 Nitrosococcus halophilus Nc4 8918731 YP_003529125.1 CDS Nhal_3718 NC_013960.1 3832585 3833832 D TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; KEGG: noc:Noc_2581 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 3832585..3833832 Nitrosococcus halophilus Nc4 8918732 YP_003529126.1 CDS Nhal_3719 NC_013960.1 3833858 3835129 R PFAM: DEAD/DEAH box helicase; helicase domain protein; SMART: DEAD-like helicase ; helicase; KEGG: noc:Noc_2582 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase complement(3833858..3835129) Nitrosococcus halophilus Nc4 8918733 YP_003529127.1 CDS Nhal_3720 NC_013960.1 3835363 3835689 D TIGRFAM: thioredoxin; PFAM: thioredoxin domain; KEGG: noc:Noc_2583 thioredoxin; thioredoxin 3835363..3835689 Nitrosococcus halophilus Nc4 8918734 YP_003529128.1 CDS Nhal_3721 NC_013960.1 3835748 3836218 D PFAM: 17 kDa surface antigen; KEGG: noc:Noc_2584 surface antigen protein; 17 kDa surface antigen 3835748..3836218 Nitrosococcus halophilus Nc4 8918735 YP_003529129.1 CDS Nhal_3722 NC_013960.1 3836314 3836676 D KEGG: mno:Mnod_2293 hypothetical protein; hypothetical protein 3836314..3836676 Nitrosococcus halophilus Nc4 8918736 YP_003529130.1 CDS Nhal_3723 NC_013960.1 3836699 3837994 R KEGG: noc:Noc_2585 adenylosuccinate synthase; TIGRFAM: adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; SMART: adenylosuccinate synthetase; adenylosuccinate synthetase complement(3836699..3837994) Nitrosococcus halophilus Nc4 8918737 YP_003529131.1 CDS Nhal_3724 NC_013960.1 3837987 3839180 R TIGRFAM: histidyl-tRNA synthetase 2; PFAM: tRNA synthetase class II (G H P and S); KEGG: noc:Noc_2586 ATP phosphoribosyltransferase regulatory subunit; histidyl-tRNA synthetase 2 complement(3837987..3839180) Nitrosococcus halophilus Nc4 8918738 YP_003529132.1 CDS Nhal_3725 NC_013960.1 3839249 3840163 R KEGG: noc:Noc_2587 HflC-like protein; TIGRFAM: HflC protein; PFAM: hypothetical protein; SMART: hypothetical protein; HflC protein complement(3839249..3840163) Nitrosococcus halophilus Nc4 8918739 YP_003529133.1 CDS Nhal_3726 NC_013960.1 3840163 3841410 R KEGG: noc:Noc_2588 HflK-like protein; TIGRFAM: HflK protein; PFAM: hypothetical protein; SMART: hypothetical protein; HflK protein complement(3840163..3841410) Nitrosococcus halophilus Nc4 8918740 YP_003529134.1 CDS Nhal_3727 NC_013960.1 3841541 3842692 R TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: noc:Noc_2589 GTP-binding protein, HSR1-related; GTP-binding proten HflX complement(3841541..3842692) Nitrosococcus halophilus Nc4 8918741 YP_003529135.1 CDS Nhal_3728 NC_013960.1 3842740 3843006 R TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: noc:Noc_2590 host factor Hfq; RNA chaperone Hfq complement(3842740..3843006) Nitrosococcus halophilus Nc4 8918742 YP_003529136.1 CDS Nhal_3729 NC_013960.1 3843359 3844294 R KEGG: noc:Noc_2591 tRNA isopentenyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase complement(3843359..3844294) Nitrosococcus halophilus Nc4 8918743 YP_003529137.1 CDS Nhal_3730 NC_013960.1 3844362 3845618 R KEGG: noc:Noc_2592 transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; ribonuclease B OB region domain; Rho termination factor domain protein; Rho termination factor RNA-binding; SMART: Cold shock protein; ATPase AAA; transcription termination factor Rho complement(3844362..3845618) Nitrosococcus halophilus Nc4 8918744 YP_003529138.1 CDS Nhal_3731 NC_013960.1 3847234 3848829 D KEGG: noc:Noc_2593 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III subunits gamma and tau; PFAM: ATPase AAA central domain protein; SMART: ATPase AAA; DNA polymerase III subunits gamma and tau 3847234..3848829 Nitrosococcus halophilus Nc4 8918747 YP_003529139.1 CDS Nhal_3732 NC_013960.1 3848878 3849198 D PFAM: conserved hypothetical protein; KEGG: noc:Noc_2594 hypothetical protein; hypothetical protein 3848878..3849198 Nitrosococcus halophilus Nc4 8918748 YP_003529140.1 CDS Nhal_3733 NC_013960.1 3849239 3849838 D KEGG: noc:Noc_2595 RecR protein; TIGRFAM: recombination protein RecR; PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; SMART: Toprim sub domain protein; recombination protein RecR 3849239..3849838 Nitrosococcus halophilus Nc4 8918749 YP_003529141.1 CDS Nhal_3734 NC_013960.1 3849956 3851179 D PFAM: metal-dependent hydrolase HDOD; EAL domain protein; KEGG: tgr:Tgr7_0322 signal transduction protein; metal-dependent hydrolase HDOD 3849956..3851179 Nitrosococcus halophilus Nc4 8918750 YP_003529142.1 CDS Nhal_3735 NC_013960.1 3851240 3851965 D KEGG: noc:Noc_2596 leucyl/phenylalanyl-tRNA--protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase; leucyl/phenylalanyl-tRNA/protein transferase 3851240..3851965 Nitrosococcus halophilus Nc4 8918751 YP_003529143.1 CDS Nhal_3736 NC_013960.1 3852192 3852911 D PFAM: Arginine-tRNA-protein transferase domain protein; KEGG: noc:Noc_2597 arginyl-tRNA-protein transferase; arginyltransferase 3852192..3852911 Nitrosococcus halophilus Nc4 8918752 YP_003529144.1 CDS Nhal_3737 NC_013960.1 3852964 3853182 D KEGG: noc:Noc_2598 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; SMART: RNA binding S1 domain protein; translation initiation factor IF-1 3852964..3853182 Nitrosococcus halophilus Nc4 8918753 YP_003529145.1 CDS Nhal_3738 NC_013960.1 3853235 3853351 R hypothetical protein complement(3853235..3853351) Nitrosococcus halophilus Nc4 8918754 YP_003529146.1 CDS Nhal_3739 NC_013960.1 3853327 3853815 R PFAM: disulfide bond formation protein DsbB; KEGG: noc:Noc_2599 disulphide bond formation protein DsbB; disulfide bond formation protein DsbB complement(3853327..3853815) Nitrosococcus halophilus Nc4 8918755 YP_003529147.1 CDS Nhal_3740 NC_013960.1 3854061 3854585 D PFAM: protein of unknown function DUF1451; KEGG: noc:Noc_2600 hypothetical protein; hypothetical protein 3854061..3854585 Nitrosococcus halophilus Nc4 8918756 YP_003529148.1 CDS Nhal_3741 NC_013960.1 3854777 3856123 R KEGG: noc:Noc_2601 hypothetical protein; hypothetical protein complement(3854777..3856123) Nitrosococcus halophilus Nc4 8918757 YP_003529149.1 CDS Nhal_3743 NC_013960.1 3857204 3857632 R PFAM: CMP/dCMP deaminase zinc-binding; KEGG: noc:Noc_2603 cytidine/deoxycytidylate deaminase, zinc-binding region; CMP/dCMP deaminase zinc-binding protein complement(3857204..3857632) Nitrosococcus halophilus Nc4 8918759 YP_003529150.1 CDS Nhal_3745 NC_013960.1 3858651 3858779 R hypothetical protein complement(3858651..3858779) Nitrosococcus halophilus Nc4 8918761 YP_003529151.1 CDS Nhal_3747 NC_013960.1 3859624 3859770 D hypothetical protein 3859624..3859770 Nitrosococcus halophilus Nc4 8918763 YP_003529152.1 CDS Nhal_3749 NC_013960.1 3861172 3862107 R PFAM: Domain of unknown function DUF1814; KEGG: dol:Dole_3139 hypothetical protein; hypothetical protein complement(3861172..3862107) Nitrosococcus halophilus Nc4 8918765 YP_003529153.1 CDS Nhal_3750 NC_013960.1 3862104 3862727 R KEGG: dol:Dole_3138 hypothetical protein; hypothetical protein complement(3862104..3862727) Nitrosococcus halophilus Nc4 8918766 YP_003529154.1 CDS Nhal_3751 NC_013960.1 3863480 3863764 D KEGG: geo:Geob_1722 transcriptional regulator, XRE family; hypothetical protein 3863480..3863764 Nitrosococcus halophilus Nc4 8918767 YP_003529155.1 CDS Nhal_3752 NC_013960.1 3864009 3865583 R TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: GMP synthase domain protein; ExsB family protein; glutamine amidotransferase class-I; KEGG: noc:Noc_0614 bifunctional GMP synthase/glutamine amidotransferase protein; GMP synthase, large subunit complement(3864009..3865583) Nitrosococcus halophilus Nc4 8918768 YP_003529156.1 CDS Nhal_3753 NC_013960.1 3865585 3867045 R KEGG: noc:Noc_0613 IMP dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; SMART: CBS domain containing protein; inosine-5'-monophosphate dehydrogenase complement(3865585..3867045) Nitrosococcus halophilus Nc4 8918769 YP_003529157.1 CDS Nhal_3754 NC_013960.1 3867138 3868496 D KEGG: noc:Noc_0612 exodeoxyribonuclease VII; TIGRFAM: exodeoxyribonuclease VII large subunit; PFAM: exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type; exodeoxyribonuclease VII large subunit 3867138..3868496 Nitrosococcus halophilus Nc4 8918770 YP_003529158.1 CDS Nhal_3755 NC_013960.1 3868906 3869037 R hypothetical protein complement(3868906..3869037) Nitrosococcus halophilus Nc4 8918771 YP_003529159.1 CDS Nhal_3756 NC_013960.1 3869518 3870831 R PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: noc:Noc_0611 TPR repeat-containing protein; hypothetical protein complement(3869518..3870831) Nitrosococcus halophilus Nc4 8918772 YP_003529160.1 CDS Nhal_3757 NC_013960.1 3870828 3871490 R TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: noc:Noc_0610 TonB-like protein; TonB family protein complement(3870828..3871490) Nitrosococcus halophilus Nc4 8918773 YP_003529161.1 CDS Nhal_3758 NC_013960.1 3871487 3871897 R PFAM: biopolymertransporter ExbD/TolR; KEGG: noc:Noc_0609 biopolymer transporter ExbD/TolR; biopolymertransporter ExbD/TolR complement(3871487..3871897) Nitrosococcus halophilus Nc4 8918774 YP_003529162.1 CDS Nhal_3759 NC_013960.1 3871903 3872427 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: noc:Noc_0608 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(3871903..3872427) Nitrosococcus halophilus Nc4 8918775 YP_003529163.1 CDS Nhal_3760 NC_013960.1 3872393 3873826 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: noc:Noc_0607 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(3872393..3873826) Nitrosococcus halophilus Nc4 8918776 YP_003529164.1 CDS Nhal_3761 NC_013960.1 3873823 3874599 R KEGG: noc:Noc_0606 hypothetical protein; hypothetical protein complement(3873823..3874599) Nitrosococcus halophilus Nc4 8918777 YP_003529165.1 CDS Nhal_3762 NC_013960.1 3875214 3875714 R TIGRFAM: FmdB family transcriptional regulator; KEGG: ppd:Ppro_0721 FmdB family regulatory protein; FmdB family transcriptional regulator complement(3875214..3875714) Nitrosococcus halophilus Nc4 8918778 YP_003529166.1 CDS Nhal_3763 NC_013960.1 3875807 3875971 R PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: noc:Noc_0605 rubredoxin-type Fe(Cys)4 protein; Rubredoxin-type Fe(Cys)4 protein complement(3875807..3875971) Nitrosococcus halophilus Nc4 8918779 YP_003529167.1 CDS Nhal_3764 NC_013960.1 3876123 3876776 D KEGG: noc:Noc_0604 thiamine-phosphate diphosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 3876123..3876776 Nitrosococcus halophilus Nc4 8918780 YP_003529168.1 CDS Nhal_3765 NC_013960.1 3876818 3877681 D KEGG: noc:Noc_0603 thioredoxin domain-containing protein; TIGRFAM: thioredoxin; PFAM: thioredoxin domain; SMART: hypothetical protein; thioredoxin 3876818..3877681 Nitrosococcus halophilus Nc4 8918781 YP_003529169.1 CDS Nhal_3766 NC_013960.1 3877747 3879438 D PFAM: MscS Mechanosensitive ion channel; KEGG: noc:Noc_0602 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS 3877747..3879438 Nitrosococcus halophilus Nc4 8918782 YP_003529170.1 CDS Nhal_3767 NC_013960.1 3879693 3880979 D TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: noc:Noc_0600 glutamate-1-semialdehyde-2,1-aminomutase; glutamate-1-semialdehyde-2,1-aminomutase 3879693..3880979 Nitrosococcus halophilus Nc4 8918783 YP_003529171.1 CDS Nhal_3768 NC_013960.1 3881070 3881987 D PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: mca:MCA1822 carbon-nitrogen family hydrolase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3881070..3881987 Nitrosococcus halophilus Nc4 8918784 YP_003529172.1 CDS Nhal_3769 NC_013960.1 3882036 3884183 D PFAM: UvrD/REP helicase; KEGG: noc:Noc_0599 DNA-dependent helicase II; UvrD/REP helicase 3882036..3884183 Nitrosococcus halophilus Nc4 8918785 YP_003529173.1 CDS Nhal_3770 NC_013960.1 3884262 3885374 D PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: noc:Noc_0598 TRAP dicarboxylate transporter-DctP subunit; TRAP dicarboxylate transporter subunit DctP 3884262..3885374 Nitrosococcus halophilus Nc4 8918786 YP_003529174.1 CDS Nhal_3771 NC_013960.1 3885615 3886202 R PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: noc:Noc_0597 Sel1 repeat-containing protein; Sel1 domain-containing protein repeat-containing protein complement(3885615..3886202) Nitrosococcus halophilus Nc4 8918787 YP_003529175.1 CDS Nhal_3772 NC_013960.1 3886545 3886709 D hypothetical protein 3886545..3886709 Nitrosococcus halophilus Nc4 8918788 YP_003529176.1 CDS Nhal_3773 NC_013960.1 3886717 3887523 D KEGG: noc:Noc_0596 hypothetical protein; hypothetical protein 3886717..3887523 Nitrosococcus halophilus Nc4 8918789 YP_003529177.1 CDS Nhal_3774 NC_013960.1 3887909 3888805 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: noc:Noc_0595 cation efflux protein; cation diffusion facilitator family transporter 3887909..3888805 Nitrosococcus halophilus Nc4 8918790 YP_003529178.1 CDS Nhal_3775 NC_013960.1 3888968 3889285 D KEGG: gur:Gura_2512 hypothetical protein; hypothetical protein 3888968..3889285 Nitrosococcus halophilus Nc4 8918791 YP_003529179.1 CDS Nhal_3776 NC_013960.1 3889435 3890121 D PFAM: metallophosphoesterase; KEGG: noc:Noc_0594 metallophosphoesterase; metallophosphoesterase 3889435..3890121 Nitrosococcus halophilus Nc4 8918792 YP_003529180.1 CDS Nhal_3777 NC_013960.1 3890189 3891046 R PFAM: rhodanese; SMART: Rhodanese domain protein; KEGG: noc:Noc_0593 3-mercaptopyruvate sulfurtransferase; rhodanese complement(3890189..3891046) Nitrosococcus halophilus Nc4 8918793 YP_003529181.1 CDS Nhal_3778 NC_013960.1 3891138 3891767 R KEGG: cja:CJA_0864 PEP-Cterm exosortase interaction domain protein; hypothetical protein complement(3891138..3891767) Nitrosococcus halophilus Nc4 8918794 YP_003529182.1 CDS Nhal_3779 NC_013960.1 3892030 3892614 D PFAM: protein of unknown function DUF785; KEGG: noc:Noc_0580 hypothetical protein; hypothetical protein 3892030..3892614 Nitrosococcus halophilus Nc4 8918795 YP_003529183.1 CDS Nhal_3780 NC_013960.1 3892661 3893221 R hypothetical protein complement(3892661..3893221) Nitrosococcus halophilus Nc4 8918796 YP_003529184.1 CDS Nhal_3781 NC_013960.1 3893757 3895034 D PFAM: succinylglutamate desuccinylase/aspartoacylase; KEGG: noc:Noc_0161 succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase 3893757..3895034 Nitrosococcus halophilus Nc4 8918797 YP_003529185.1 CDS Nhal_3782 NC_013960.1 3895167 3895292 D hypothetical protein 3895167..3895292 Nitrosococcus halophilus Nc4 8918798 YP_003529186.1 CDS Nhal_3784 NC_013960.1 3896930 3899233 D KEGG: dac:Daci_4352 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; PAS sensor protein 3896930..3899233 Nitrosococcus halophilus Nc4 8918800 YP_003529187.1 CDS Nhal_3785 NC_013960.1 3899266 3900300 D PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: rpe:RPE_1630 aromatic amino acid beta-eliminating lyase/threonine aldolase; threonine aldolase 3899266..3900300 Nitrosococcus halophilus Nc4 8918801 YP_003529188.1 CDS Nhal_3786 NC_013960.1 3900444 3901685 R PFAM: sodium/hydrogen exchanger; KEGG: noc:Noc_0159 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(3900444..3901685) Nitrosococcus halophilus Nc4 8918802 YP_003529189.1 CDS Nhal_3787 NC_013960.1 3901929 3902807 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: mms:mma_0700 transporter of the DMT superfamily; hypothetical protein 3901929..3902807 Nitrosococcus halophilus Nc4 8918803 YP_003529190.1 CDS Nhal_3788 NC_013960.1 3903037 3903420 R KEGG: noc:Noc_3007 hypothetical protein; hypothetical protein complement(3903037..3903420) Nitrosococcus halophilus Nc4 8918804 YP_003529191.1 CDS Nhal_3789 NC_013960.1 3903562 3904254 R KEGG: noc:Noc_3006 hypothetical protein; hypothetical protein complement(3903562..3904254) Nitrosococcus halophilus Nc4 8918805 YP_003529192.1 CDS Nhal_3790 NC_013960.1 3904694 3905506 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hypothetical protein; short-chain dehydrogenase/reductase SDR 3904694..3905506 Nitrosococcus halophilus Nc4 8918806 YP_003529193.1 CDS Nhal_3791 NC_013960.1 3905541 3906683 R TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pae:PA0396 twitching motility protein PilU; twitching motility protein complement(3905541..3906683) Nitrosococcus halophilus Nc4 8918807 YP_003529194.1 CDS Nhal_3792 NC_013960.1 3906692 3907729 R KEGG: noc:Noc_3004 pilus retraction protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: ATPase AAA; twitching motility protein complement(3906692..3907729) Nitrosococcus halophilus Nc4 8918808 YP_003529195.1 CDS Nhal_3793 NC_013960.1 3907850 3908545 D PFAM: alanine racemase domain protein; KEGG: noc:Noc_3003 hypothetical protein; alanine racemase domain-containing protein 3907850..3908545 Nitrosococcus halophilus Nc4 8918809 YP_003529196.1 CDS Nhal_3794 NC_013960.1 3908640 3909473 D KEGG: noc:Noc_3002 delta 1-pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase 3908640..3909473 Nitrosococcus halophilus Nc4 8918810 YP_003529197.1 CDS Nhal_3795 NC_013960.1 3909466 3910029 D PFAM: protein of unknown function YGGT; KEGG: noc:Noc_3001 hypothetical protein; hypothetical protein 3909466..3910029 Nitrosococcus halophilus Nc4 8918811 YP_003529198.1 CDS Nhal_3796 NC_013960.1 3910036 3910344 D PFAM: protein of unknown function DUF167; KEGG: noc:Noc_3000 hypothetical protein; hypothetical protein 3910036..3910344 Nitrosococcus halophilus Nc4 8918812 YP_003529199.1 CDS Nhal_3797 NC_013960.1 3910387 3911610 R PFAM: major facilitator superfamily MFS_1; KEGG: noc:Noc_2999 major facilitator transporter; major facilitator superfamily protein complement(3910387..3911610) Nitrosococcus halophilus Nc4 8918813 YP_003529200.1 CDS Nhal_3798 NC_013960.1 3911734 3912396 D KEGG: noc:Noc_2998 orotate phosphoribosyltransferase; TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; orotate phosphoribosyltransferase 3911734..3912396 Nitrosococcus halophilus Nc4 8918814 YP_003529201.1 CDS Nhal_3799 NC_013960.1 3912386 3913141 R PFAM: protein of unknown function DUF81; KEGG: noc:Noc_2997 hypothetical protein; hypothetical protein complement(3912386..3913141) Nitrosococcus halophilus Nc4 8918815 YP_003529202.1 CDS Nhal_3800 NC_013960.1 3913184 3913822 D KEGG: noc:Noc_2996 hypothetical protein; hypothetical protein 3913184..3913822 Nitrosococcus halophilus Nc4 8918816 YP_003529203.1 CDS Nhal_3801 NC_013960.1 3913862 3914788 R KEGG: noc:Noc_2995 acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; acetylglutamate kinase complement(3913862..3914788) Nitrosococcus halophilus Nc4 8918817 YP_003529204.1 CDS Nhal_3802 NC_013960.1 3914828 3917326 R PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; KEGG: noc:Noc_2994 phosphomannomutase; phosphomannomutase complement(3914828..3917326) Nitrosococcus halophilus Nc4 8918818 YP_003529205.1 CDS Nhal_3803 NC_013960.1 3917554 3918009 R TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; KEGG: noc:Noc_2993 deoxyuridine 5'-triphosphate nucleotidohydrolase; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut complement(3917554..3918009) Nitrosococcus halophilus Nc4 8918819 YP_003529206.1 CDS Nhal_3804 NC_013960.1 3917990 3919201 R KEGG: noc:Noc_2992 DNA/pantothenate metabolism flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase complement(3917990..3919201) Nitrosococcus halophilus Nc4 8918820 YP_003529207.1 CDS Nhal_3805 NC_013960.1 3919448 3920239 D PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: noc:Noc_2989 DNA-J like membrane chaperone protein; heat shock protein DnaJ domain-containing protein 3919448..3920239 Nitrosococcus halophilus Nc4 8918821 YP_003529208.1 CDS Nhal_3806 NC_013960.1 3920265 3921107 D KEGG: noc:Noc_2990 hypothetical protein; hypothetical protein 3920265..3921107 Nitrosococcus halophilus Nc4 8918822 YP_003529209.1 CDS Nhal_3807 NC_013960.1 3921104 3921760 R KEGG: noc:Noc_2991 hypothetical protein; hypothetical protein complement(3921104..3921760) Nitrosococcus halophilus Nc4 8918823 YP_003529210.1 CDS Nhal_3808 NC_013960.1 3922325 3923578 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: noc:Noc_2006 oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3922325..3923578 Nitrosococcus halophilus Nc4 8918824 YP_003529211.1 CDS Nhal_3809 NC_013960.1 3923640 3924383 D PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: mca:MCA1384 UbiE/COQ5 family methlytransferase; type 11 methyltransferase 3923640..3924383 Nitrosococcus halophilus Nc4 8918825 YP_003529212.1 CDS Nhal_3810 NC_013960.1 3924489 3925562 R KEGG: noc:Noc_3008 uroporphyrinogen decarboxylase HemE; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: uroporphyrinogen decarboxylase (URO-D); uroporphyrinogen decarboxylase complement(3924489..3925562) Nitrosococcus halophilus Nc4 8918826 YP_003529213.1 CDS Nhal_3811 NC_013960.1 3925757 3926257 R KEGG: noc:Noc_3009 phosphoribosylaminoimidazole carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase, catalytic subunit complement(3925757..3926257) Nitrosococcus halophilus Nc4 8918827 YP_003529214.1 CDS Nhal_3812 NC_013960.1 3926322 3928676 R KEGG: noc:Noc_3010 DNA topoisomerase III; TIGRFAM: DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein; DNA topoisomerase I complement(3926322..3928676) Nitrosococcus halophilus Nc4 8918828 YP_003529215.1 CDS Nhal_3813 NC_013960.1 3928789 3929268 R PFAM: protein of unknown function DUF494; KEGG: noc:Noc_3011 hypothetical protein; hypothetical protein complement(3928789..3929268) Nitrosococcus halophilus Nc4 8918829 YP_003529216.1 CDS Nhal_3814 NC_013960.1 3929265 3930371 R TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: noc:Noc_3012 smf protein; DNA protecting protein DprA complement(3929265..3930371) Nitrosococcus halophilus Nc4 8918830 YP_003529217.1 CDS Nhal_3815 NC_013960.1 3930396 3931433 R PFAM: peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: noc:Noc_3013 peptidoglycan-binding LysM; peptidoglycan-binding LysM complement(3930396..3931433) Nitrosococcus halophilus Nc4 8918831 YP_003529218.1 CDS Nhal_3816 NC_013960.1 3931707 3932210 D KEGG: noc:Noc_3014 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 3931707..3932210 Nitrosococcus halophilus Nc4 8918832 YP_003529219.1 CDS Nhal_3817 NC_013960.1 3932466 3933434 D TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: noc:Noc_3015 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 3932466..3933434 Nitrosococcus halophilus Nc4 8918833 YP_003529220.1 CDS Nhal_3818 NC_013960.1 3933444 3934766 D TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: noc:Noc_3016 Fmu, rRNA SAM-dependent methyltransferase; sun protein 3933444..3934766 Nitrosococcus halophilus Nc4 8918834 YP_003529221.1 CDS Nhal_3819 NC_013960.1 3934744 3935337 D KEGG: noc:Noc_3017 hypothetical protein; hypothetical protein 3934744..3935337 Nitrosococcus halophilus Nc4 8918835 YP_003529222.1 CDS Nhal_3820 NC_013960.1 3935301 3937502 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: noc:Noc_3018 signal transduction histidine kinase, NtrY; ATP-binding region ATPase domain-containing protein 3935301..3937502 Nitrosococcus halophilus Nc4 8918836 YP_003529223.1 CDS Nhal_3821 NC_013960.1 3937499 3938860 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; ATPase AAA; KEGG: noc:Noc_3019 two component, sigma-54 specific, fis family transcriptional regulator; sigma-54 factor interaction domain-containing protein 3937499..3938860 Nitrosococcus halophilus Nc4 8918837 YP_003529224.1 CDS Nhal_3822 NC_013960.1 3938909 3940282 D PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: noc:Noc_3020 potassium transporter peripheral membrane component; TrkA-N domain-containing protein 3938909..3940282 Nitrosococcus halophilus Nc4 8918838 YP_003529225.1 CDS Nhal_3823 NC_013960.1 3940289 3943156 R TIGRFAM: excinuclease ABC subunit A; PFAM: ABC transporter related; KEGG: noc:Noc_3021 excinuclease ABC subunit A; excinuclease ABC subunit A complement(3940289..3943156) Nitrosococcus halophilus Nc4 8918839 YP_003529226.1 CDS Nhal_3824 NC_013960.1 3943219 3944637 D PFAM: major facilitator superfamily MFS_1; KEGG: noc:Noc_3022 major facilitator transporter; major facilitator superfamily protein 3943219..3944637 Nitrosococcus halophilus Nc4 8918840 YP_003529227.1 CDS Nhal_3825 NC_013960.1 3944676 3945146 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: noc:Noc_3023 single-strand binding protein; single-strand binding protein 3944676..3945146 Nitrosococcus halophilus Nc4 8918841 YP_003529228.1 CDS Nhal_3827 NC_013960.1 3945640 3946206 D PFAM: FRG domain protein; KEGG: eca:ECA2892 hypothetical protein; FRG domain-containing protein 3945640..3946206 Nitrosococcus halophilus Nc4 8918843 YP_003529229.1 CDS Nhal_3828 NC_013960.1 3946365 3947165 R PFAM: transposase IS4 family protein; KEGG: met:M446_6909 transposase IS4 family protein; transposase IS4 family protein complement(3946365..3947165) Nitrosococcus halophilus Nc4 8918844 YP_003529230.1 CDS Nhal_3830 NC_013960.1 3947342 3947689 D KEGG: maq:Maqu_2675 hypothetical protein; hypothetical protein 3947342..3947689 Nitrosococcus halophilus Nc4 8918846 YP_003529231.1 CDS Nhal_3832 NC_013960.1 3948366 3950063 R KEGG: amc:MADE_03437 lipoprotein; hypothetical protein complement(3948366..3950063) Nitrosococcus halophilus Nc4 8918848 YP_003529232.1 CDS Nhal_3833 NC_013960.1 3950209 3953316 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_3993 TonB-dependent receptor; TonB-dependent receptor complement(3950209..3953316) Nitrosococcus halophilus Nc4 8918849 YP_003529233.1 CDS Nhal_3834 NC_013960.1 3953452 3954633 R SMART: hypothetical protein; KEGG: mxa:MXAN_5179 hypothetical protein; hypothetical protein complement(3953452..3954633) Nitrosococcus halophilus Nc4 8918850 YP_003529234.1 CDS Nhal_3835 NC_013960.1 3954676 3955311 R TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: dde:Dde_2156 TonB-like; TonB family protein complement(3954676..3955311) Nitrosococcus halophilus Nc4 8918851 YP_003529235.1 CDS Nhal_3836 NC_013960.1 3955326 3955730 R PFAM: biopolymertransporter ExbD/TolR; KEGG: asa:ASA_4320 biopolymer transporter; biopolymertransporter ExbD/TolR complement(3955326..3955730) Nitrosococcus halophilus Nc4 8918852 YP_003529236.1 CDS Nhal_3837 NC_013960.1 3955737 3956363 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: dol:Dole_1737 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(3955737..3956363) Nitrosococcus halophilus Nc4 8918853 YP_003529237.1 CDS Nhal_3838 NC_013960.1 3956384 3957868 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: dal:Dalk_3681 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(3956384..3957868) Nitrosococcus halophilus Nc4 8918854 YP_003529238.1 CDS Nhal_3839 NC_013960.1 3957865 3958638 R KEGG: noc:Noc_0606 hypothetical protein; hypothetical protein complement(3957865..3958638) Nitrosococcus halophilus Nc4 8918855 YP_003529239.1 CDS Nhal_3840 NC_013960.1 3959003 3960925 R KEGG: noc:Noc_0319 two component diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: metal-dependent hydrolase HDOD; GGDEF domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein; response regulator receiver; diguanylate cyclase complement(3959003..3960925) Nitrosococcus halophilus Nc4 8918856 YP_003529240.1 CDS Nhal_3841 NC_013960.1 3961077 3961979 R TIGRFAM: tyrosine recombinase XerC; PFAM: integrase family protein; integrase; KEGG: noc:Noc_0318 site-specific tyrosine recombinase XerC; tyrosine recombinase XerC complement(3961077..3961979) Nitrosococcus halophilus Nc4 8918857 YP_003529241.1 CDS Nhal_3842 NC_013960.1 3961986 3962717 R PFAM: protein of unknown function DUF484; KEGG: noc:Noc_0317 hypothetical protein; hypothetical protein complement(3961986..3962717) Nitrosococcus halophilus Nc4 8918858 YP_003529242.1 CDS Nhal_3843 NC_013960.1 3962714 3963544 R KEGG: noc:Noc_0316 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase; Phenazine biosynthesis PhzC/PhzF protein; diaminopimelate epimerase complement(3962714..3963544) Nitrosococcus halophilus Nc4 8918859 YP_003529243.1 CDS Nhal_3844 NC_013960.1 3963576 3964262 R PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: noc:Noc_0315 hypothetical protein; type 11 methyltransferase complement(3963576..3964262) Nitrosococcus halophilus Nc4 8918860 YP_003529244.1 CDS Nhal_3845 NC_013960.1 3964323 3965573 R TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: noc:Noc_0314 diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(3964323..3965573) Nitrosococcus halophilus Nc4 8918861 YP_003529245.1 CDS Nhal_3846 NC_013960.1 3965577 3965711 R hypothetical protein complement(3965577..3965711) Nitrosococcus halophilus Nc4 8918862 YP_003529246.1 CDS Nhal_3847 NC_013960.1 3965956 3967644 D TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; general secretory system II protein E domain protein; KEGG: noc:Noc_0312 type II secretion system protein E; type IV-A pilus assembly ATPase PilB 3965956..3967644 Nitrosococcus halophilus Nc4 8918863 YP_003529247.1 CDS Nhal_3848 NC_013960.1 3967649 3968869 D PFAM: type II secretion system protein; KEGG: noc:Noc_0311 type II secretion system protein F; type II secretion system protein 3967649..3968869 Nitrosococcus halophilus Nc4 8918864 YP_003529248.1 CDS Nhal_3849 NC_013960.1 3968889 3969758 D PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: noc:Noc_0310 prepilin peptidase; prepilin peptidase 3968889..3969758 Nitrosococcus halophilus Nc4 8918865 YP_003529249.1 CDS Nhal_3850 NC_013960.1 3969808 3970407 D KEGG: noc:Noc_0309 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase 3969808..3970407 Nitrosococcus halophilus Nc4 8918866 YP_003529250.1 CDS Nhal_3851 NC_013960.1 3970503 3971270 D PFAM: protein of unknown function DUF1342; KEGG: tgr:Tgr7_0783 hypothetical protein; hypothetical protein 3970503..3971270 Nitrosococcus halophilus Nc4 8918867 YP_003529251.1 CDS Nhal_3852 NC_013960.1 3971267 3971455 D PFAM: protein of unknown function DUF329; KEGG: noc:Noc_0308 hypothetical protein; hypothetical protein 3971267..3971455 Nitrosococcus halophilus Nc4 8918868 YP_003529252.1 CDS Nhal_3853 NC_013960.1 3971574 3972530 R TIGRFAM: mutator MutT protein; PFAM: thiamine monophosphate synthase; NUDIX hydrolase; KEGG: noc:Noc_0306 hypothetical protein; mutator MutT protein complement(3971574..3972530) Nitrosococcus halophilus Nc4 8918869 YP_003529253.1 CDS Nhal_3854 NC_013960.1 3972577 3972783 D KEGG: noc:Noc_0305 hypothetical protein; hypothetical protein 3972577..3972783 Nitrosococcus halophilus Nc4 8918870 YP_003529254.1 CDS Nhal_3855 NC_013960.1 3972857 3973084 R KEGG: noc:Noc_0304 hypothetical protein; hypothetical protein complement(3972857..3973084) Nitrosococcus halophilus Nc4 8918871 YP_003529255.1 CDS Nhal_3856 NC_013960.1 3973149 3974246 R TIGRFAM: quinolinate synthetase complex, subunit alpha; PFAM: Quinolinate synthetase A; KEGG: noc:Noc_0303 quinolinate synthetase; quinolinate synthetase complex subunit alpha complement(3973149..3974246) Nitrosococcus halophilus Nc4 8918872 YP_003529256.1 CDS Nhal_3857 NC_013960.1 3974495 3976282 R TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); GAD domain protein; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: noc:Noc_0302 aspartyl-tRNA synthetase; aspartyl-tRNA synthetase complement(3974495..3976282) Nitrosococcus halophilus Nc4 8918873 YP_003529257.1 CDS Nhal_3858 NC_013960.1 3976558 3976887 R TIGRFAM: FmdB family transcriptional regulator; KEGG: noc:Noc_0301 hypothetical protein; FmdB family transcriptional regulator complement(3976558..3976887) Nitrosococcus halophilus Nc4 8918874 YP_003529258.1 CDS Nhal_3859 NC_013960.1 3977161 3977823 D PFAM: protein of unknown function DUF1614; KEGG: mca:MCA0983 hypothetical protein; hypothetical protein 3977161..3977823 Nitrosococcus halophilus Nc4 8918875 YP_003529259.1 CDS Nhal_3860 NC_013960.1 3977974 3978579 D KEGG: noc:Noc_0299 ubiquinol-cytochrome C reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome C reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome C reductase, iron-sulfur subunit 3977974..3978579 Nitrosococcus halophilus Nc4 8918876 YP_003529260.1 CDS Nhal_3861 NC_013960.1 3978579 3979805 D PFAM: cytochrome b/b6 domain; KEGG: noc:Noc_0298 cytochrome b/b6-like; cytochrome b/b6 domain-containing protein 3978579..3979805 Nitrosococcus halophilus Nc4 8918877 YP_003529261.1 CDS Nhal_3862 NC_013960.1 3979802 3980524 D PFAM: cytochrome C1; KEGG: noc:Noc_0297 cytochrome C1; cytochrome C1 3979802..3980524 Nitrosococcus halophilus Nc4 8918878 YP_003529262.1 CDS Nhal_3863 NC_013960.1 3980741 3981379 D PFAM: glutathione S-transferase domain; KEGG: noc:Noc_0296 glutathione S-transferase-like protein; glutathione S-transferase domain-containing protein 3980741..3981379 Nitrosococcus halophilus Nc4 8918879 YP_003529263.1 CDS Nhal_3864 NC_013960.1 3981397 3981813 D PFAM: stringent starvation protein B; KEGG: noc:Noc_0295 ClpXP protease specificity-enhancing factor; stringent starvation protein B 3981397..3981813 Nitrosococcus halophilus Nc4 8918880 YP_003529264.1 CDS Nhal_3865 NC_013960.1 3981684 3982901 R SMART: extracellular solute-binding protein family 3; KEGG: bxe:Bxe_B2425 ABC transporter periplasmic ligand binding protein; family 3 extracellular solute-binding protein complement(3981684..3982901) Nitrosococcus halophilus Nc4 8918881 YP_003529265.1 CDS Nhal_3866 NC_013960.1 3983063 3984865 R KEGG: sme:SM_b20173 methanol dehydrogenase protein, large subunit; TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: pyrrolo-quinoline quinone; SMART: pyrrolo-quinoline quinone; PQQ-dependent dehydrogenase, methanol/ethanol family complement(3983063..3984865) Nitrosococcus halophilus Nc4 8918882 YP_003529266.1 CDS Nhal_3867 NC_013960.1 3985094 3986533 R TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: noc:Noc_0264 glutamyl-tRNA synthetase; glutamyl-tRNA synthetase complement(3985094..3986533) Nitrosococcus halophilus Nc4 8918883 YP_003529267.1 CDS Nhal_3868 NC_013960.1 3986869 3987306 D PFAM: blue (type 1) copper domain protein; KEGG: noc:Noc_0263 blue (type1) copper domain-containing protein; blue (type 1) copper domain-containing protein 3986869..3987306 Nitrosococcus halophilus Nc4 8918884 YP_003529268.1 CDS Nhal_3869 NC_013960.1 3987366 3987707 R KEGG: vei:Veis_4971 hypothetical protein; hypothetical protein complement(3987366..3987707) Nitrosococcus halophilus Nc4 8918885 YP_003529269.1 CDS Nhal_3870 NC_013960.1 3987949 3989517 D KEGG: noc:Noc_0262 NAD(P) transhydrogenase subunit alpha; TIGRFAM: NAD(P) transhydrogenase, subunit alpha; PFAM: alanine dehydrogenase/PNT domain protein; NAD(P) transhydrogenase subunit alpha 3987949..3989517 Nitrosococcus halophilus Nc4 8918886 YP_003529270.1 CDS Nhal_3871 NC_013960.1 3989531 3990979 D PFAM: NAD(P) transhydrogenase subunit beta; KEGG: noc:Noc_0261 NAD(P) transhydrogenase subunit beta; NAD(P)(+) transhydrogenase 3989531..3990979 Nitrosococcus halophilus Nc4 8918887 YP_003529271.1 CDS Nhal_3872 NC_013960.1 3991079 3991942 D PFAM: methylene-tetrahydromethanopterin dehydrogenase ; shikimate/quinate 5-dehydrogenase; KEGG: mpo:Mpop_1749 methylenetetrahydrofolate dehydrogenase (NADP(+)); methylenetetrahydrofolate dehydrogenase 3991079..3991942 Nitrosococcus halophilus Nc4 8918888 YP_003529272.1 CDS Nhal_3873 NC_013960.1 3991967 3992974 D TIGRFAM: beta-ribofuranosylaminobenzene 5'-phosphate synthase family; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: mch:Mchl_2163 beta-ribofuranosylaminobenzene 5'-phosphate synthase family; beta-ribofuranosylaminobenzene 5'-phosphate synthase family protein 3991967..3992974 Nitrosococcus halophilus Nc4 8918889 YP_003529273.1 CDS Nhal_3874 NC_013960.1 3993114 3994016 D PFAM: methylene-tetrahydromethanopterin dehydrogenase; KEGG: mca:MCA3018 methylene tetrahydromethanopterin dehydrogenase/methylenetetrahydrofolate dehydrogenase; methylenetetrahydrofolate dehydrogenase 3993114..3994016 Nitrosococcus halophilus Nc4 8918890 YP_003529274.1 CDS Nhal_3875 NC_013960.1 3993982 3995193 D PFAM: protein of unknown function DUF201; KEGG: noc:Noc_0260 hypothetical protein; hypothetical protein 3993982..3995193 Nitrosococcus halophilus Nc4 8918891 YP_003529275.1 CDS Nhal_3876 NC_013960.1 3995277 3996266 D KEGG: mfa:Mfla_1658 N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase; TIGRFAM: methenyltetrahydromethanopterin cyclohydrolase; PFAM: Methenyltetrahydromethanopterin cyclohydrolase; methenyltetrahydromethanopterin cyclohydrolase 3995277..3996266 Nitrosococcus halophilus Nc4 8918892 YP_003529276.1 CDS Nhal_3877 NC_013960.1 3996263 3997174 D TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp; KEGG: noc:Noc_0259 S6 modification enzyme RimK; RimK family alpha-L-glutamate ligase 3996263..3997174 Nitrosococcus halophilus Nc4 8918893 YP_003529277.1 CDS Nhal_3878 NC_013960.1 3997171 3998055 D PFAM: triphosphoribosyl-dephospho-CoA protein; KEGG: mfa:Mfla_1656 triphosphoribosyl-dephospho-CoA protein; triphosphoribosyl-dephospho-CoA protein 3997171..3998055 Nitrosococcus halophilus Nc4 8918894 YP_003529278.1 CDS Nhal_3879 NC_013960.1 3998186 3998707 D TIGRFAM: formaldehyde-activating enzyme; PFAM: Formaldehyde-activating enzyme (Fae); KEGG: mfa:Mfla_1652 formaldehyde-activating enzyme; formaldehyde-activating enzyme 3998186..3998707 Nitrosococcus halophilus Nc4 8918895 YP_003529279.1 CDS Nhal_3880 NC_013960.1 3998754 3999467 R PFAM: histidine biosynthesis protein; KEGG: noc:Noc_0258 histidine biosynthesis; histidine biosynthesis protein complement(3998754..3999467) Nitrosococcus halophilus Nc4 8918896 YP_003529280.1 CDS Nhal_3881 NC_013960.1 3999521 4000561 D PFAM: protein of unknown function DUF201; KEGG: noc:Noc_0257 hypothetical protein; hypothetical protein 3999521..4000561 Nitrosococcus halophilus Nc4 8918897 YP_003529281.1 CDS Nhal_3882 NC_013960.1 4000536 4001597 D TIGRFAM: H4MPT-linked C1 transfer pathway protein; PFAM: hydantoinase/oxoprolinase; KEGG: noc:Noc_0256 S-layer protein; H4MPT-linked C1 transfer pathway protein 4000536..4001597 Nitrosococcus halophilus Nc4 8918898 YP_003529282.1 CDS Nhal_3883 NC_013960.1 4001605 4003020 D KEGG: noc:Noc_0255 para-aminobenzoate synthase, component I; TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: chorismate binding-like; anthranilate synthase component I domain protein; para-aminobenzoate synthase subunit I 4001605..4003020 Nitrosococcus halophilus Nc4 8918899 YP_003529283.1 CDS Nhal_3884 NC_013960.1 4003255 4003863 D PFAM: aspartate/glutamate/uridylate kinase; KEGG: noc:Noc_0254 amino acid kinase family protein; aspartate/glutamate/uridylate kinase 4003255..4003863 Nitrosococcus halophilus Nc4 8918900 YP_003529284.1 CDS Nhal_3885 NC_013960.1 4004420 4005496 R TIGRFAM: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; KEGG: noc:Noc_0253 3-dehydroquinate synthase; 3-dehydroquinate synthase complement(4004420..4005496) Nitrosococcus halophilus Nc4 8918901 YP_003529285.1 CDS Nhal_3886 NC_013960.1 4005569 4006117 R PFAM: shikimate kinase; KEGG: noc:Noc_0252 shikimate kinase; shikimate kinase complement(4005569..4006117) Nitrosococcus halophilus Nc4 8918902 YP_003529286.1 CDS Nhal_3887 NC_013960.1 4006287 4008386 R TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: noc:Noc_0251 fimbrial assembly protein PilQ precursor; type IV pilus secretin PilQ complement(4006287..4008386) Nitrosococcus halophilus Nc4 8918903 YP_003529287.1 CDS Nhal_3888 NC_013960.1 4008403 4008981 R PFAM: pilus assembly protein PilP; KEGG: noc:Noc_0250 pilus assembly protein, PilQ; pilus assembly protein PilP complement(4008403..4008981) Nitrosococcus halophilus Nc4 8918904 YP_003529288.1 CDS Nhal_3889 NC_013960.1 4008978 4009595 R PFAM: pilus assembly protein PilO; KEGG: noc:Noc_0249 pilus assembly protein, PilO; pilus assembly protein PilO complement(4008978..4009595) Nitrosococcus halophilus Nc4 8918905 YP_003529289.1 CDS Nhal_3890 NC_013960.1 4009595 4010170 R PFAM: fimbrial assembly family protein; KEGG: noc:Noc_0248 type 4 fimbrial biogenesis protein PilN; fimbrial assembly family protein complement(4009595..4010170) Nitrosococcus halophilus Nc4 8918906 YP_003529290.1 CDS Nhal_3891 NC_013960.1 4010170 4011285 R TIGRFAM: type IV pilus assembly protein PilM; KEGG: noc:Noc_0247 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM complement(4010170..4011285) Nitrosococcus halophilus Nc4 8918907 YP_003529291.1 CDS Nhal_3892 NC_013960.1 4011511 4013949 D TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: noc:Noc_0246 penicillin-binding protein 1A; penicillin-binding protein, 1A family 4011511..4013949 Nitrosococcus halophilus Nc4 8918908 YP_003529292.1 CDS Nhal_3893 NC_013960.1 4013972 4014580 D KEGG: noc:Noc_0245 hypothetical protein; hypothetical protein 4013972..4014580 Nitrosococcus halophilus Nc4 8918909 YP_003529293.1 CDS Nhal_3894 NC_013960.1 4014575 4015888 R PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: noc:Noc_0244 malate dehydrogenase; malate dehydrogenase complement(4014575..4015888) Nitrosococcus halophilus Nc4 8918910 YP_003529294.1 CDS Nhal_3895 NC_013960.1 4016044 4016250 R TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: noc:Noc_0243 ribosomal protein L31; 50S ribosomal protein L31 complement(4016044..4016250) Nitrosococcus halophilus Nc4 8918911 YP_003529295.1 CDS Nhal_3896 NC_013960.1 4016416 4017867 R TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: noc:Noc_0242 K+ transporter trk; potassium uptake protein, TrkH family complement(4016416..4017867) Nitrosococcus halophilus Nc4 8918912 YP_003529296.1 CDS Nhal_3897 NC_013960.1 4017875 4019437 R TIGRFAM: apolipoprotein N-acyltransferase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: noc:Noc_0241 apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase complement(4017875..4019437) Nitrosococcus halophilus Nc4 8918913 YP_003529297.1 CDS Nhal_3898 NC_013960.1 4019503 4020387 R PFAM: CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; KEGG: noc:Noc_0240 Mg2+/Co2+ transporter; CBS domain-containing protein complement(4019503..4020387) Nitrosococcus halophilus Nc4 8918914 YP_003529298.1 CDS Nhal_3899 NC_013960.1 4020397 4020858 R PFAM: protein of unknown function UPF0054; KEGG: noc:Noc_0239 hypothetical protein; hypothetical protein complement(4020397..4020858) Nitrosococcus halophilus Nc4 8918915 YP_003529299.1 CDS Nhal_3900 NC_013960.1 4020855 4021847 R PFAM: PhoH family protein; KEGG: noc:Noc_0238 PhoH-like protein; PhoH family protein complement(4020855..4021847) Nitrosococcus halophilus Nc4 8918916 YP_003529300.1 CDS Nhal_3901 NC_013960.1 4022168 4023511 R KEGG: noc:Noc_0237 tRNA-i(6)A37 modification enzyme MiaB; TIGRFAM: tRNA-i(6)A37 thiotransferase enzyme MiaB; RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004 ; radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; tRNA-i(6)A37 thiotransferase protein MiaB complement(4022168..4023511) Nitrosococcus halophilus Nc4 8918917 YP_003529301.1 CDS Nhal_3902 NC_013960.1 4023713 4024387 D TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: noc:Noc_0236 DNA repair protein RadC; DNA repair protein RadC 4023713..4024387 Nitrosococcus halophilus Nc4 8918918 YP_003529302.1 CDS Nhal_3903 NC_013960.1 4024408 4024929 R PFAM: dihydrofolate reductase region; KEGG: noc:Noc_0235 dihydrofolate reductase; dihydrofolate reductase complement(4024408..4024929) Nitrosococcus halophilus Nc4 8918919 YP_003529303.1 CDS Nhal_3904 NC_013960.1 4024940 4025734 R KEGG: noc:Noc_0234 thymidylate synthase; TIGRFAM: thymidylate synthase; PFAM: thymidylate synthase; thymidylate synthase complement(4024940..4025734) Nitrosococcus halophilus Nc4 8918920 YP_003529304.1 CDS Nhal_3905 NC_013960.1 4025737 4026540 R TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; KEGG: noc:Noc_0233 prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase complement(4025737..4026540) Nitrosococcus halophilus Nc4 8918921 YP_003529305.1 CDS Nhal_3906 NC_013960.1 4026728 4028017 D KEGG: noc:Noc_0232 hypothetical protein; hypothetical protein 4026728..4028017 Nitrosococcus halophilus Nc4 8918922 YP_003529306.1 CDS Nhal_3907 NC_013960.1 4028072 4028197 D hypothetical protein 4028072..4028197 Nitrosococcus halophilus Nc4 8918923 YP_003529307.1 CDS Nhal_3908 NC_013960.1 4028185 4028448 D KEGG: tcx:Tcr_0368 hypothetical protein; hypothetical protein 4028185..4028448 Nitrosococcus halophilus Nc4 8918924 YP_003529308.1 CDS Nhal_3909 NC_013960.1 4028735 4029505 D KEGG: noc:Noc_0231 hypothetical protein; hypothetical protein 4028735..4029505 Nitrosococcus halophilus Nc4 8918925 YP_003529309.1 CDS Nhal_3911 NC_013960.1 4029959 4030249 D PFAM: DNA polymerase beta domain protein region; KEGG: noc:Noc_1203 DNA polymerase, beta-like region; DNA polymerase beta domain-containing protein 4029959..4030249 Nitrosococcus halophilus Nc4 8918927 YP_003529310.1 CDS Nhal_3912 NC_013960.1 4030422 4030730 R TIGRFAM: CRISPR-associated protein Cas2; KEGG: gsu:GSU1393 hypothetical protein; CRISPR-associated protein Cas2 complement(4030422..4030730) Nitrosococcus halophilus Nc4 8918928 YP_003529311.1 CDS Nhal_3914 NC_013960.1 4031476 4031724 R PFAM: YcfA family protein; KEGG: gur:Gura_0355 hypothetical protein; YcfA family protein complement(4031476..4031724) Nitrosococcus halophilus Nc4 8918930 YP_003529312.1 CDS Nhal_3915 NC_013960.1 4031721 4031927 R KEGG: mca:MCA0653 hypothetical protein; hypothetical protein complement(4031721..4031927) Nitrosococcus halophilus Nc4 8918931 YP_003529313.1 CDS Nhal_3916 NC_013960.1 4031951 4032391 D hypothetical protein 4031951..4032391 Nitrosococcus halophilus Nc4 8918932 YP_003529314.1 CDS Nhal_3917 NC_013960.1 4032458 4032610 D PFAM: CopG domain protein DNA-binding domain protein; CopG domain-containing protein DNA-binding domain-containing protein 4032458..4032610 Nitrosococcus halophilus Nc4 8918933 YP_003529315.1 CDS Nhal_3918 NC_013960.1 4032684 4033753 D KEGG: mch:Mchl_5622 transposase and inactivated derivatives-like protein; hypothetical protein join(4032684..4033172,4033172..4033753) Nitrosococcus halophilus Nc4 8918934 YP_003529316.1 CDS Nhal_3919 NC_013960.1 4034040 4034210 R hypothetical protein complement(4034040..4034210) Nitrosococcus halophilus Nc4 8918935 YP_003529317.1 CDS Nhal_3920 NC_013960.1 4034608 4035696 R TIGRFAM: GTP-binding protein YchF; PFAM: protein of unknown function DUF933; GTP-binding protein HSR1-related; KEGG: noc:Noc_0517 translation-associated GTPase; GTP-binding protein YchF complement(4034608..4035696) Nitrosococcus halophilus Nc4 8918937 YP_003529318.1 CDS Nhal_3921 NC_013960.1 4035710 4036300 R KEGG: noc:Noc_0516 peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase complement(4035710..4036300) Nitrosococcus halophilus Nc4 8918938 YP_003529319.1 CDS Nhal_3922 NC_013960.1 4036311 4036946 R TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: noc:Noc_0515 ribosomal protein L25; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 complement(4036311..4036946) Nitrosococcus halophilus Nc4 8918939 YP_003529320.1 CDS Nhal_3923 NC_013960.1 4037044 4037979 R KEGG: noc:Noc_0514 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase complement(4037044..4037979) Nitrosococcus halophilus Nc4 8918940 YP_003529321.1 CDS Nhal_3924 NC_013960.1 4038187 4039038 R KEGG: noc:Noc_0513 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein; 4-diphosphocytidyl-2C-methyl-D-erythritol kinase complement(4038187..4039038) Nitrosococcus halophilus Nc4 8918942 YP_003529322.1 CDS Nhal_3925 NC_013960.1 4039046 4039654 R TIGRFAM: outer membrane lipoprotein LolB; PFAM: outer membrane lipoprotein LolB; KEGG: noc:Noc_0512 outer membrane lipoprotein LolB; outer membrane lipoprotein LolB complement(4039046..4039654) Nitrosococcus halophilus Nc4 8918943 YP_003529323.1 CDS Nhal_3926 NC_013960.1 4039651 4041387 R PFAM: hypothetical protein; TPR repeat-containing protein; KEGG: noc:Noc_0511 hypothetical protein; hypothetical protein complement(4039651..4041387) Nitrosococcus halophilus Nc4 8918944 YP_003529324.1 CDS Nhal_3927 NC_013960.1 4041654 4042916 D KEGG: noc:Noc_0510 glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; glutamyl-tRNA reductase 4041654..4042916 Nitrosococcus halophilus Nc4 8918945 YP_003529325.1 CDS Nhal_3928 NC_013960.1 4042929 4044020 D TIGRFAM: peptide chain release factor 1; PFAM: class I peptide chain release factor; PCRF domain protein; KEGG: noc:Noc_0509 peptide chain release factor 1; peptide chain release factor 1 4042929..4044020 Nitrosococcus halophilus Nc4 8918946 YP_003529326.1 CDS Nhal_3929 NC_013960.1 4044191 4044919 D TIGRFAM: septum site-determining protein MinC; PFAM: septum formation inhibitor MinC; septum formation inhibitor MinC domain protein; KEGG: noc:Noc_0508 septum formation inhibitor MinC; septum site-determining protein MinC 4044191..4044919 Nitrosococcus halophilus Nc4 8918947 YP_003529327.1 CDS Nhal_3930 NC_013960.1 4044957 4045766 D TIGRFAM: septum site-determining protein MinD; PFAM: cobyrinic acid ac-diamide synthase; KEGG: noc:Noc_0507 septum site-determining protein MinD; septum site-determining protein MinD 4044957..4045766 Nitrosococcus halophilus Nc4 8918948 YP_003529328.1 CDS Nhal_3931 NC_013960.1 4045773 4046078 D TIGRFAM: cell division topological specificity factor MinE; PFAM: septum formation topological specificity factor MinE; KEGG: noc:Noc_0506 septum formation topological specificity factor MinE; cell division topological specificity factor MinE 4045773..4046078 Nitrosococcus halophilus Nc4 8918949 YP_003529329.1 CDS Nhal_3932 NC_013960.1 4046296 4046439 R hypothetical protein complement(4046296..4046439) Nitrosococcus halophilus Nc4 8918950 YP_003529330.1 CDS Nhal_3933 NC_013960.1 4046557 4047843 R PFAM: HemY domain protein; SMART: Tetratricopeptide domain protein; KEGG: noc:Noc_0505 HemY-like; HemY domain-containing protein complement(4046557..4047843) Nitrosococcus halophilus Nc4 8918951 YP_003529331.1 CDS Nhal_3934 NC_013960.1 4047840 4049459 R PFAM: protein of unknown function DUF513 hemX; KEGG: noc:Noc_0504 hypothetical protein; hypothetical protein complement(4047840..4049459) Nitrosococcus halophilus Nc4 8918952 YP_003529332.1 CDS Nhal_3935 NC_013960.1 4049456 4050253 R PFAM: uroporphyrinogen III synthase HEM4; KEGG: noc:Noc_0503 uroporphyrinogen III synthase HEM4; uroporphyrinogen III synthase HEM4 complement(4049456..4050253) Nitrosococcus halophilus Nc4 8918953 YP_003529333.1 CDS Nhal_3936 NC_013960.1 4050246 4051178 R KEGG: noc:Noc_0502 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: porphobilinogen deaminase; porphobilinogen deaminase complement(4050246..4051178) Nitrosococcus halophilus Nc4 8918954 YP_003529334.1 CDS Nhal_3937 NC_013960.1 4051379 4052779 D TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: noc:Noc_0501 argininosuccinate lyase; argininosuccinate lyase 4051379..4052779 Nitrosococcus halophilus Nc4 8918955 YP_003529335.1 CDS Nhal_3938 NC_013960.1 4052776 4053891 R TIGRFAM: glycine cleavage system protein T; PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; KEGG: noc:Noc_0500 glycine cleavage system protein T; glycine cleavage system protein T complement(4052776..4053891) Nitrosococcus halophilus Nc4 8918956 YP_003529336.1 CDS Nhal_3939 NC_013960.1 4054076 4055194 D KEGG: mca:MCA2343 protease DO; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; protease Do 4054076..4055194 Nitrosococcus halophilus Nc4 8918957 YP_003529337.1 CDS Nhal_3940 NC_013960.1 4055228 4057612 R KEGG: noc:Noc_3068 sucrose synthase; TIGRFAM: sucrose synthase; PFAM: sucrose synthase; glycosyl transferase group 1; sucrose synthase complement(4055228..4057612) Nitrosococcus halophilus Nc4 8918958 YP_003529338.1 CDS Nhal_3941 NC_013960.1 4057612 4059771 R TIGRFAM: sucrose-phosphate synthase; HAD-superfamily hydrolase, subfamily IIB; PFAM: sucrose-6F-phosphate phosphohydrolase; glycosyl transferase group 1; haloacid dehalogenase type 3; KEGG: noc:Noc_3069 HAD family hydrolase; sucrose-phosphate synthase complement(4057612..4059771) Nitrosococcus halophilus Nc4 8918959 YP_003529339.1 CDS Nhal_3942 NC_013960.1 4059771 4060685 R PFAM: PfkB domain protein; KEGG: noc:Noc_3070 PfkB family of carbohydrate kinase; PfkB domain-containing protein complement(4059771..4060685) Nitrosococcus halophilus Nc4 8918960 YP_003529340.1 CDS Nhal_3943 NC_013960.1 4060730 4062565 R TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II; KEGG: noc:Noc_3071 glucosamine-fructose-6-phosphate aminotransferase, isomerising; glucosamine/fructose-6-phosphate aminotransferase complement(4060730..4062565) Nitrosococcus halophilus Nc4 8918961 YP_003529341.1 CDS Nhal_3944 NC_013960.1 4062599 4063972 R TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: nucleotidyl transferase; transferase hexapeptide repeat containing protein; KEGG: noc:Noc_3072 UDP-N-acetylglucosamine pyrophosphorylase; UDP-N-acetylglucosamine pyrophosphorylase complement(4062599..4063972) Nitrosococcus halophilus Nc4 8918962 YP_003529342.1 CDS Nhal_3945 NC_013960.1 4064156 4064587 R TIGRFAM: ATP synthase F1 subunit epsilon; PFAM: H+transporting two-sector ATPase delta/subunit epsilon; KEGG: noc:Noc_3073 H+-transporting two-sector ATPase, delta/subunit epsilon; ATP synthase F1 subunit epsilon complement(4064156..4064587) Nitrosococcus halophilus Nc4 8918963 YP_003529343.1 CDS Nhal_3946 NC_013960.1 4064612 4065988 R KEGG: noc:Noc_3074 F0F1 ATP synthase subunit beta; TIGRFAM: ATP synthase F1 subunit beta; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; SMART: ATPase AAA; ATP synthase F1 subunit beta complement(4064612..4065988) Nitrosococcus halophilus Nc4 8918964 YP_003529344.1 CDS Nhal_3947 NC_013960.1 4066063 4066926 R TIGRFAM: ATP synthase F1 subunit gamma; PFAM: H+transporting two-sector ATPase subunit gamma; KEGG: noc:Noc_3075 sodium-transporting two-sector ATPase; ATP synthase F1 subunit gamma complement(4066063..4066926) Nitrosococcus halophilus Nc4 8918965 YP_003529345.1 CDS Nhal_3948 NC_013960.1 4066942 4068489 R KEGG: noc:Noc_3076 F0F1 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1 subunit alpha; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; ATP synthase F1 subunit alpha complement(4066942..4068489) Nitrosococcus halophilus Nc4 8918966 YP_003529346.1 CDS Nhal_3949 NC_013960.1 4068516 4069052 R TIGRFAM: ATP synthase F1 subunit delta; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: noc:Noc_3077 F0F1 ATP synthase subunit delta; ATP synthase F1 subunit delta complement(4068516..4069052) Nitrosococcus halophilus Nc4 8918967 YP_003529347.1 CDS Nhal_3950 NC_013960.1 4069068 4069538 R TIGRFAM: ATP synthase F0 subunit beta; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: noc:Noc_3078 F0F1 ATP synthase subunit B; ATP synthase F0 subunit beta complement(4069068..4069538) Nitrosococcus halophilus Nc4 8918968 YP_003529348.1 CDS Nhal_3951 NC_013960.1 4069588 4069872 R TIGRFAM: ATP synthase F0 C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: noc:Noc_3079 ATP synthase F0 C subunit; ATP synthase F0 subunit C complement(4069588..4069872) Nitrosococcus halophilus Nc4 8918969 YP_003529349.1 CDS Nhal_3952 NC_013960.1 4069934 4070737 R TIGRFAM: ATP synthase F0 subunit alpha; PFAM: H+transporting two-sector ATPase subunit alpha; KEGG: noc:Noc_3080 F0F1 ATP synthase subunit A; ATP synthase F0 subunit alpha complement(4069934..4070737) Nitrosococcus halophilus Nc4 8918970 YP_003529350.1 CDS Nhal_3953 NC_013960.1 4070801 4071172 R PFAM: ATP synthase I chain; KEGG: noc:Noc_3081 hypothetical protein; ATP synthase I chain complement(4070801..4071172) Nitrosococcus halophilus Nc4 8918971 YP_003529351.1 CDS Nhal_3954 NC_013960.1 4071405 4072274 R KEGG: noc:Noc_3082 ParB-like partition protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; parB-like partition protein complement(4071405..4072274) Nitrosococcus halophilus Nc4 8918972 YP_003529352.1 CDS Nhal_3955 NC_013960.1 4072282 4073076 R PFAM: cobyrinic acid ac-diamide synthase; KEGG: noc:Noc_3083 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase complement(4072282..4073076) Nitrosococcus halophilus Nc4 8918973 YP_003529353.1 CDS Nhal_3956 NC_013960.1 4073078 4073713 R TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: noc:Noc_3084 glucose inhibited division protein; methyltransferase GidB complement(4073078..4073713) Nitrosococcus halophilus Nc4 8918974 YP_003529354.1 CDS Nhal_3957 NC_013960.1 4073779 4075668 R TIGRFAM: glucose inhibited division protein A; PFAM: glucose-inhibited division protein A; FAD dependent oxidoreductase; KEGG: noc:Noc_3085 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; glucose inhibited division protein A complement(4073779..4075668) Nitrosococcus halophilus Nc4 8918975 YP_003529355.1 CDS Nhal_3958 NC_013960.1 4075672 4077048 R TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: noc:Noc_3086 tRNA modification GTPase TrmE; tRNA modification GTPase TrmE complement(4075672..4077048) Nitrosococcus halophilus Nc4 8918976 YP_003529356.1 CDS Nhal_3959 NC_013960.1 4077012 4078676 R PFAM: hypothetical protein; KEGG: noc:Noc_3087 hypothetical protein; hypothetical protein complement(4077012..4078676) Nitrosococcus halophilus Nc4 8918977 YP_003529357.1 CDS Nhal_3960 NC_013960.1 4078854 4079213 R TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: noc:Noc_3088 ribonuclease P protein; ribonuclease P protein component complement(4078854..4079213) Nitrosococcus halophilus Nc4 8918978 YP_003529358.1 CDS Nhal_3961 NC_013960.1 4079243 4079377 R TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: noc:Noc_3089 ribosomal protein L34; 50S ribosomal protein L34 complement(4079243..4079377) Nitrosococcus halophilus Nc4 8918979 Nhal_R0001 tRNA Nhal_R0001 NC_013960.1 42870 42945 D tRNA-Met 42870..42945 Nitrosococcus halophilus Nc4 8915002 Nhal_R0002 tRNA Nhal_R0002 NC_013960.1 75405 75481 D tRNA-Pro 75405..75481 Nitrosococcus halophilus Nc4 8915042 Nhal_R0003 tRNA Nhal_R0003 NC_013960.1 174830 174905 R tRNA-Phe complement(174830..174905) Nitrosococcus halophilus Nc4 8915129 Nhal_R0004 tRNA Nhal_R0004 NC_013960.1 198153 198228 D tRNA-Lys 198153..198228 Nitrosococcus halophilus Nc4 8915155 Nhal_R0005 tRNA Nhal_R0005 NC_013960.1 445328 445414 R tRNA-Leu complement(445328..445414) Nitrosococcus halophilus Nc4 8915404 Nhal_R0007 tRNA Nhal_R0007 NC_013960.1 526226 526302 R tRNA-Arg complement(526226..526302) Nitrosococcus halophilus Nc4 8915484 Nhal_R0008 tRNA Nhal_R0008 NC_013960.1 527777 527852 R tRNA-Ala complement(527777..527852) Nitrosococcus halophilus Nc4 8915486 Nhal_R0009 tRNA Nhal_R0009 NC_013960.1 804286 804361 D tRNA-Val 804286..804361 Nitrosococcus halophilus Nc4 8915767 Nhal_R0010 tRNA Nhal_R0010 NC_013960.1 804384 804460 D tRNA-Asp 804384..804460 Nitrosococcus halophilus Nc4 8915768 Nhal_R0012 tRNA Nhal_R0012 NC_013960.1 951257 951333 D tRNA-Pro 951257..951333 Nitrosococcus halophilus Nc4 8915913 Nhal_R0013 tRNA Nhal_R0013 NC_013960.1 951393 951469 D tRNA-Arg 951393..951469 Nitrosococcus halophilus Nc4 8915914 Nhal_R0014 tRNA Nhal_R0014 NC_013960.1 961640 961715 D tRNA-His 961640..961715 Nitrosococcus halophilus Nc4 8915933 Nhal_R0015 tRNA Nhal_R0015 NC_013960.1 961729 961804 D tRNA-Lys 961729..961804 Nitrosococcus halophilus Nc4 8915934 Nhal_R0016 tRNA Nhal_R0016 NC_013960.1 1023038 1023105 D tRNA-Ser 1023038..1023105 Nitrosococcus halophilus Nc4 8916016 Nhal_R0017 tRNA Nhal_R0017 NC_013960.1 1059596 1059670 R tRNA-Glu complement(1059596..1059670) Nitrosococcus halophilus Nc4 8916050 Nhal_R0019 tRNA Nhal_R0019 NC_013960.1 1099761 1099837 D tRNA-Ile 1099761..1099837 Nitrosococcus halophilus Nc4 8916087 Nhal_R0020 tRNA Nhal_R0020 NC_013960.1 1099903 1099978 D tRNA-Ala 1099903..1099978 Nitrosococcus halophilus Nc4 8916088 Nhal_R0023 tRNA Nhal_R0023 NC_013960.1 1121181 1121273 D tRNA-Ser 1121181..1121273 Nitrosococcus halophilus Nc4 8916109 Nhal_R0024 tRNA Nhal_R0024 NC_013960.1 1121446 1121522 D tRNA-Arg 1121446..1121522 Nitrosococcus halophilus Nc4 8916110 Nhal_R0028 tRNA Nhal_R0028 NC_013960.1 1988500 1988586 R tRNA-Leu complement(1988500..1988586) Nitrosococcus halophilus Nc4 8916917 Nhal_R0029 tRNA Nhal_R0029 NC_013960.1 1994587 1994676 D tRNA-Ser 1994587..1994676 Nitrosococcus halophilus Nc4 8916926 Nhal_R0030 tRNA Nhal_R0030 NC_013960.1 2156764 2156840 R tRNA-Glu complement(2156764..2156840) Nitrosococcus halophilus Nc4 8917077 Nhal_R0031 tRNA Nhal_R0031 NC_013960.1 2156899 2156974 R tRNA-Ala complement(2156899..2156974) Nitrosococcus halophilus Nc4 8917078 Nhal_R0032 tRNA Nhal_R0032 NC_013960.1 2341336 2341410 R tRNA-Val complement(2341336..2341410) Nitrosococcus halophilus Nc4 8917263 Nhal_R0033 tRNA Nhal_R0033 NC_013960.1 2444061 2444145 D tRNA-Tyr 2444061..2444145 Nitrosococcus halophilus Nc4 8917367 Nhal_R0034 tRNA Nhal_R0034 NC_013960.1 2444206 2444279 D tRNA-Gly 2444206..2444279 Nitrosococcus halophilus Nc4 8917368 Nhal_R0035 tRNA Nhal_R0035 NC_013960.1 2444337 2444412 D tRNA-Thr 2444337..2444412 Nitrosococcus halophilus Nc4 8917369 Nhal_R0036 tRNA Nhal_R0036 NC_013960.1 2445798 2445873 D tRNA-Trp 2445798..2445873 Nitrosococcus halophilus Nc4 8917371 Nhal_R0037 tRNA Nhal_R0037 NC_013960.1 2720043 2720117 D tRNA-Thr 2720043..2720117 Nitrosococcus halophilus Nc4 8917648 Nhal_R0038 tRNA Nhal_R0038 NC_013960.1 2829652 2829728 D tRNA-Met 2829652..2829728 Nitrosococcus halophilus Nc4 8917770 Nhal_R0039 tRNA Nhal_R0039 NC_013960.1 3098424 3098499 D tRNA-Thr 3098424..3098499 Nitrosococcus halophilus Nc4 8918022 Nhal_R0040 tRNA Nhal_R0040 NC_013960.1 3162623 3162698 D tRNA-Gly 3162623..3162698 Nitrosococcus halophilus Nc4 8918091 Nhal_R0041 tRNA Nhal_R0041 NC_013960.1 3162764 3162837 D tRNA-Cys 3162764..3162837 Nitrosococcus halophilus Nc4 8918092 Nhal_R0042 tRNA Nhal_R0042 NC_013960.1 3184604 3184689 D tRNA-Leu 3184604..3184689 Nitrosococcus halophilus Nc4 8918110 Nhal_R0043 tRNA Nhal_R0043 NC_013960.1 3275643 3275716 R tRNA-Gly complement(3275643..3275716) Nitrosococcus halophilus Nc4 8918195 Nhal_R0044 tRNA Nhal_R0044 NC_013960.1 3285577 3285653 R tRNA-Pro complement(3285577..3285653) Nitrosococcus halophilus Nc4 8918208 Nhal_R0045 tRNA Nhal_R0045 NC_013960.1 3293075 3293151 R tRNA-Val complement(3293075..3293151) Nitrosococcus halophilus Nc4 8918217 Nhal_R0046 tRNA Nhal_R0046 NC_013960.1 3296682 3296757 D tRNA-Asn 3296682..3296757 Nitrosococcus halophilus Nc4 8918220 Nhal_R0047 tRNA Nhal_R0047 NC_013960.1 3367711 3367787 R tRNA-Arg complement(3367711..3367787) Nitrosococcus halophilus Nc4 8918282 Nhal_R0048 tRNA Nhal_R0048 NC_013960.1 3501154 3501245 D tRNA-Ser 3501154..3501245 Nitrosococcus halophilus Nc4 8918413 Nhal_R0049 tRNA Nhal_R0049 NC_013960.1 3583834 3583907 D tRNA-Gln 3583834..3583907 Nitrosococcus halophilus Nc4 8918487 Nhal_R0050 tRNA Nhal_R0050 NC_013960.1 3814420 3814504 R tRNA-Leu complement(3814420..3814504) Nitrosococcus halophilus Nc4 8918713 Nhal_R0052 tRNA Nhal_R0052 NC_013960.1 3845888 3845978 D tRNA-Ser 3845888..3845978 Nitrosococcus halophilus Nc4 8918745 Nhal_R0054 tRNA Nhal_R0054 NC_013960.1 4034427 4034503 R tRNA-Met complement(4034427..4034503) Nitrosococcus halophilus Nc4 8918936 Nhal_R0055 tRNA Nhal_R0055 NC_013960.1 4038095 4038169 R tRNA-Gln complement(4038095..4038169) Nitrosococcus halophilus Nc4 8918941 Nhal_R0018 rRNA Nhal_R0018 NC_013960.1 1097922 1099454 D 16S ribosomal RNA 1097922..1099454 Nitrosococcus halophilus Nc4 8916086 Nhal_R0021 rRNA Nhal_R0021 NC_013960.1 1100203 1103105 D 23S ribosomal RNA 1100203..1103105 Nitrosococcus halophilus Nc4 8916089 Nhal_R0022 rRNA Nhal_R0022 NC_013960.1 1103190 1103303 D 5S ribosomal RNA 1103190..1103303 Nitrosococcus halophilus Nc4 8916090 Nhal_R0025 rRNA Nhal_R0025 NC_013960.1 1968684 1970216 D 16S ribosomal RNA 1968684..1970216 Nitrosococcus halophilus Nc4 8916898 Nhal_R0026 rRNA Nhal_R0026 NC_013960.1 1970410 1973312 D 23S ribosomal RNA 1970410..1973312 Nitrosococcus halophilus Nc4 8916899 Nhal_R0027 rRNA Nhal_R0027 NC_013960.1 1973397 1973510 D 5S ribosomal RNA 1973397..1973510 Nitrosococcus halophilus Nc4 8916900