-- dump date 20120504_154634 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_803554.1 116491819 4416998 50..1390 1 NC_008525.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1390 dnaA 4416998 dnaA Pediococcus pentosaceus ATCC 25745 chromosomal replication initiation protein YP_803554.1 50 D 278197 CDS YP_803555.1 116491820 4416999 1568..2707 1 NC_008525.1 DNA polymerase III, beta subunit 2707 4416999 PEPE_0002 Pediococcus pentosaceus ATCC 25745 DNA polymerase III, beta subunit YP_803555.1 1568 D 278197 CDS YP_803556.1 116491821 4417000 2928..3155 1 NC_008525.1 S4-like RNA binding protein 3155 4417000 PEPE_0003 Pediococcus pentosaceus ATCC 25745 S4-like RNA binding protein YP_803556.1 2928 D 278197 CDS YP_803557.1 116491822 4417001 3155..4279 1 NC_008525.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 4279 recF 4417001 recF Pediococcus pentosaceus ATCC 25745 recombination protein F YP_803557.1 3155 D 278197 CDS YP_803558.1 116491823 4418726 4284..6230 1 NC_008525.1 DNA gyrase subunit B 6230 4418726 PEPE_0005 Pediococcus pentosaceus ATCC 25745 DNA gyrase subunit B YP_803558.1 4284 D 278197 CDS YP_803559.1 116491824 4418727 6279..8810 1 NC_008525.1 DNA gyrase subunit A 8810 4418727 PEPE_0006 Pediococcus pentosaceus ATCC 25745 DNA gyrase subunit A YP_803559.1 6279 D 278197 CDS YP_803560.1 116491825 4418728 9057..9341 1 NC_008525.1 SSU ribosomal protein S6P 9341 4418728 PEPE_0007 Pediococcus pentosaceus ATCC 25745 SSU ribosomal protein S6P YP_803560.1 9057 D 278197 CDS YP_803561.1 116491826 4418729 9377..9904 1 NC_008525.1 single-stranded DNA-binding protein 9904 4418729 PEPE_0008 Pediococcus pentosaceus ATCC 25745 single-stranded DNA-binding protein YP_803561.1 9377 D 278197 CDS YP_803562.1 116491827 4418730 9928..10164 1 NC_008525.1 SSU ribosomal protein S18P 10164 4418730 PEPE_0009 Pediococcus pentosaceus ATCC 25745 SSU ribosomal protein S18P YP_803562.1 9928 D 278197 CDS YP_803563.1 116491828 4418731 10367..12367 1 NC_008525.1 signal protein 12367 4418731 PEPE_0010 Pediococcus pentosaceus ATCC 25745 signal protein YP_803563.1 10367 D 278197 CDS YP_803564.1 116491829 4418732 12373..12825 1 NC_008525.1 50S ribosomal protein L9 12825 4418732 PEPE_0011 Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L9 YP_803564.1 12373 D 278197 CDS YP_803565.1 116491830 4418733 12874..14271 1 NC_008525.1 primary replicative DNA helicase 14271 4418733 PEPE_0012 Pediococcus pentosaceus ATCC 25745 primary replicative DNA helicase YP_803565.1 12874 D 278197 CDS YP_803566.1 116491831 4418734 14364..15563 1 NC_008525.1 major facilitator superfamily permease 15563 4418734 PEPE_0013 Pediococcus pentosaceus ATCC 25745 major facilitator superfamily permease YP_803566.1 14364 D 278197 CDS YP_803567.1 116491832 4418735 complement(15587..15955) 1 NC_008525.1 hypothetical protein 15955 4418735 PEPE_0014 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803567.1 15587 R 278197 CDS YP_803568.1 116491833 4418736 16199..16930 1 NC_008525.1 permease 16930 4418736 PEPE_0015 Pediococcus pentosaceus ATCC 25745 permease YP_803568.1 16199 D 278197 CDS YP_803569.1 116491834 4418737 17257..18741 1 NC_008525.1 ABC transporter ATPase 18741 4418737 PEPE_0016 Pediococcus pentosaceus ATCC 25745 ABC transporter ATPase YP_803569.1 17257 D 278197 CDS YP_803570.1 116491835 4418738 18825..19328 1 NC_008525.1 transcriptional regulator 19328 4418738 PEPE_0017 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_803570.1 18825 D 278197 CDS YP_803571.1 116491836 4418739 19331..20395 1 NC_008525.1 peptide ABC transporter permease 20395 4418739 PEPE_0018 Pediococcus pentosaceus ATCC 25745 peptide ABC transporter permease YP_803571.1 19331 D 278197 CDS YP_803572.1 116491837 4418740 20399..21076 1 NC_008525.1 peptide ABC transporter ATPase 21076 4418740 PEPE_0019 Pediococcus pentosaceus ATCC 25745 peptide ABC transporter ATPase YP_803572.1 20399 D 278197 CDS YP_803573.1 116491838 4418741 21247..21819 1 NC_008525.1 XRE family transcriptional regulator 21819 4418741 PEPE_0020 Pediococcus pentosaceus ATCC 25745 XRE family transcriptional regulator YP_803573.1 21247 D 278197 CDS YP_803574.1 116491839 4418742 complement(21867..23051) 1 NC_008525.1 acetyltransferase 23051 4418742 PEPE_0021 Pediococcus pentosaceus ATCC 25745 acetyltransferase YP_803574.1 21867 R 278197 CDS YP_803575.1 116491840 4418691 complement(23066..23251) 1 NC_008525.1 hypothetical protein 23251 4418691 PEPE_0022 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803575.1 23066 R 278197 CDS YP_803576.1 116491841 4418692 complement(23258..24493) 1 NC_008525.1 cellobiose-specific PTS system IIC component 24493 4418692 PEPE_0023 Pediococcus pentosaceus ATCC 25745 cellobiose-specific PTS system IIC component YP_803576.1 23258 R 278197 CDS YP_803577.1 116491842 4418693 complement(24750..25106) 1 NC_008525.1 transcriptional regulator 25106 4418693 PEPE_0024 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_803577.1 24750 R 278197 CDS YP_803578.1 116491843 4418694 25243..26082 1 NC_008525.1 aldo/keto reductase 26082 4418694 PEPE_0025 Pediococcus pentosaceus ATCC 25745 aldo/keto reductase YP_803578.1 25243 D 278197 CDS YP_803579.1 116491844 4418695 26103..26897 1 NC_008525.1 Short-chain alcohol dehydrogenase 26897 4418695 PEPE_0026 Pediococcus pentosaceus ATCC 25745 Short-chain alcohol dehydrogenase YP_803579.1 26103 D 278197 CDS YP_803580.1 116491845 4418696 26992..27540 1 NC_008525.1 flavoprotein 27540 4418696 PEPE_0027 Pediococcus pentosaceus ATCC 25745 flavoprotein YP_803580.1 26992 D 278197 CDS YP_803581.1 116491846 4418697 complement(27600..27935) 1 NC_008525.1 ArsR family transcriptional regulator 27935 4418697 PEPE_0028 Pediococcus pentosaceus ATCC 25745 ArsR family transcriptional regulator YP_803581.1 27600 R 278197 CDS YP_803582.1 116491847 4418698 28001..28606 1 NC_008525.1 permease, cadmium resistance protein 28606 4418698 PEPE_0029 Pediococcus pentosaceus ATCC 25745 permease, cadmium resistance protein YP_803582.1 28001 D 278197 CDS YP_803583.1 116491848 4418699 28732..30021 1 NC_008525.1 hypothetical protein 30021 4418699 PEPE_0030 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803583.1 28732 D 278197 CDS YP_803584.1 116491849 4418700 30045..30512 1 NC_008525.1 hypothetical protein 30512 4418700 PEPE_0031 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803584.1 30045 D 278197 CDS YP_803585.1 116491850 4418701 30774..31094 1 NC_008525.1 membrane transporter 31094 4418701 PEPE_0032 Pediococcus pentosaceus ATCC 25745 membrane transporter YP_803585.1 30774 D 278197 CDS YP_803586.1 116491851 4418702 31114..31752 1 NC_008525.1 hypothetical protein 31752 4418702 PEPE_0033 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803586.1 31114 D 278197 CDS YP_803587.1 116491852 4418703 complement(31840..33201) 1 NC_008525.1 NAD(FAD)-dependent dehydrogenase 33201 4418703 PEPE_0034 Pediococcus pentosaceus ATCC 25745 NAD(FAD)-dependent dehydrogenase YP_803587.1 31840 R 278197 CDS YP_803588.1 116491853 4418704 33332..34012 1 NC_008525.1 C-di-GMP-specific phosphodiesterase 34012 4418704 PEPE_0035 Pediococcus pentosaceus ATCC 25745 C-di-GMP-specific phosphodiesterase YP_803588.1 33332 D 278197 CDS YP_803589.1 116491854 4418705 complement(34048..34506) 1 NC_008525.1 BS_ykrK family protein 34506 4418705 PEPE_0036 Pediococcus pentosaceus ATCC 25745 BS_ykrK family protein YP_803589.1 34048 R 278197 CDS YP_803590.1 116491855 4418706 34634..35272 1 NC_008525.1 hemolysin III-like protein 35272 4418706 PEPE_0037 Pediococcus pentosaceus ATCC 25745 hemolysin III-like protein YP_803590.1 34634 D 278197 CDS YP_803591.1 116491856 4418707 complement(35344..35877) 1 NC_008525.1 acetyltransferase 35877 4418707 PEPE_0038 Pediococcus pentosaceus ATCC 25745 acetyltransferase YP_803591.1 35344 R 278197 CDS YP_803592.1 116491857 4418708 36064..37335 1 NC_008525.1 Na+/H+-dicarboxylate symporter 37335 4418708 PEPE_0039 Pediococcus pentosaceus ATCC 25745 Na+/H+-dicarboxylate symporter YP_803592.1 36064 D 278197 CDS YP_803593.1 116491858 4418709 complement(37405..39198) 1 NC_008525.1 glycerophosphoryl diester phosphodiesterase 39198 4418709 PEPE_0040 Pediococcus pentosaceus ATCC 25745 glycerophosphoryl diester phosphodiesterase YP_803593.1 37405 R 278197 CDS YP_803594.1 116491859 4418710 complement(39323..39556) 1 NC_008525.1 hypothetical protein 39556 4418710 PEPE_0041 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803594.1 39323 R 278197 CDS YP_803595.1 116491860 4418711 complement(39569..40096) 1 NC_008525.1 membrane ancor connecting MutS2 with cell-division Z-ring 40096 4418711 PEPE_0042 Pediococcus pentosaceus ATCC 25745 membrane ancor connecting MutS2 with cell-division Z-ring YP_803595.1 39569 R 278197 CDS YP_803596.1 116491861 4418712 40370..41059 1 NC_008525.1 hypothetical protein 41059 4418712 PEPE_0043 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803596.1 40370 D 278197 CDS YP_803597.1 116491862 4418713 41074..41754 1 NC_008525.1 hypothetical protein 41754 4418713 PEPE_0044 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803597.1 41074 D 278197 CDS YP_803598.1 116491863 4418714 41901..43502 1 NC_008525.1 manganese transporter NRAMP 43502 4418714 PEPE_0045 Pediococcus pentosaceus ATCC 25745 manganese transporter NRAMP YP_803598.1 41901 D 278197 CDS YP_803599.1 116491864 4418715 43502..43933 1 NC_008525.1 universal stress protein UspA-like nucleotide-binding protein 43933 4418715 PEPE_0046 Pediococcus pentosaceus ATCC 25745 universal stress protein UspA-like nucleotide-binding protein YP_803599.1 43502 D 278197 CDS YP_803600.1 116491865 4418716 complement(43989..44879) 1 NC_008525.1 diacylglycerol kinase family lipid kinase 44879 4418716 PEPE_0047 Pediococcus pentosaceus ATCC 25745 diacylglycerol kinase family lipid kinase YP_803600.1 43989 R 278197 CDS YP_803601.1 116491866 4418717 complement(44872..45768) 1 NC_008525.1 fhu operon transcription regulator 45768 4418717 PEPE_0048 Pediococcus pentosaceus ATCC 25745 fhu operon transcription regulator YP_803601.1 44872 R 278197 CDS YP_803602.1 116491867 4418718 45891..46445 1 NC_008525.1 galactoside O-acetyltransferase 46445 4418718 PEPE_0049 Pediococcus pentosaceus ATCC 25745 galactoside O-acetyltransferase YP_803602.1 45891 D 278197 CDS YP_803603.1 116491868 4418719 46445..47194 1 NC_008525.1 Short-chain alcohol dehydrogenase of unknown specificity 47194 4418719 PEPE_0050 Pediococcus pentosaceus ATCC 25745 Short-chain alcohol dehydrogenase of unknown specificity YP_803603.1 46445 D 278197 CDS YP_803604.1 116491869 4418720 47214..48080 1 NC_008525.1 aldo/keto reductase 48080 4418720 PEPE_0051 Pediococcus pentosaceus ATCC 25745 aldo/keto reductase YP_803604.1 47214 D 278197 CDS YP_803605.1 116491870 4418721 complement(48155..48898) 1 NC_008525.1 ABC transporter permease 48898 4418721 PEPE_0052 Pediococcus pentosaceus ATCC 25745 ABC transporter permease YP_803605.1 48155 R 278197 CDS YP_803606.1 116491871 4418722 complement(48900..49604) 1 NC_008525.1 ABC transporter ATPase 49604 4418722 PEPE_0053 Pediococcus pentosaceus ATCC 25745 ABC transporter ATPase YP_803606.1 48900 R 278197 CDS YP_803607.1 116491872 4418723 complement(49597..49974) 1 NC_008525.1 GntR family transcriptional regulator 49974 4418723 PEPE_0054 Pediococcus pentosaceus ATCC 25745 GntR family transcriptional regulator YP_803607.1 49597 R 278197 CDS YP_803608.1 116491873 4418724 50136..51311 1 NC_008525.1 Beta-lactamase class A 51311 4418724 PEPE_0055 Pediococcus pentosaceus ATCC 25745 Beta-lactamase class A YP_803608.1 50136 D 278197 CDS YP_803609.1 116491874 4418725 51333..52217 1 NC_008525.1 hypothetical protein 52217 4418725 PEPE_0056 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803609.1 51333 D 278197 CDS YP_803610.1 116491875 4418758 52344..53369 1 NC_008525.1 penicillin V acylase precursor. cysteine peptidase. MEROPS family C59 53369 4418758 PEPE_0057 Pediococcus pentosaceus ATCC 25745 penicillin V acylase precursor. cysteine peptidase. MEROPS family C59 YP_803610.1 52344 D 278197 CDS YP_803611.1 116491876 4418759 complement(53451..54203) 1 NC_008525.1 nicotinamide mononucleotide transporter 54203 4418759 PEPE_0058 Pediococcus pentosaceus ATCC 25745 nicotinamide mononucleotide transporter YP_803611.1 53451 R 278197 CDS YP_803612.1 116491877 4418760 54772..61776 1 NC_008525.1 subtilisin-like serine protease 61776 4418760 PEPE_0059 Pediococcus pentosaceus ATCC 25745 subtilisin-like serine protease YP_803612.1 54772 D 278197 CDS YP_803613.1 116491878 4418761 complement(61866..62231) 1 NC_008525.1 MerR family transcriptional regulator 62231 4418761 PEPE_0060 Pediococcus pentosaceus ATCC 25745 MerR family transcriptional regulator YP_803613.1 61866 R 278197 CDS YP_803614.1 116491879 4418762 62378..63400 1 NC_008525.1 Aryl-alcohol dehydrogenase related enzyme 63400 4418762 PEPE_0061 Pediococcus pentosaceus ATCC 25745 Aryl-alcohol dehydrogenase related enzyme YP_803614.1 62378 D 278197 CDS YP_803615.1 116491880 4418763 63976..66345 1 NC_008525.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, especially gram positive pathogens, have paralogs that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 66345 4418763 PEPE_0062 Pediococcus pentosaceus ATCC 25745 preprotein translocase subunit SecA YP_803615.1 63976 D 278197 CDS YP_803616.1 116491881 4418764 66342..67574 1 NC_008525.1 protein translocase subunit secY/sec61 alpha 67574 4418764 PEPE_0063 Pediococcus pentosaceus ATCC 25745 protein translocase subunit secY/sec61 alpha YP_803616.1 66342 D 278197 CDS YP_803617.1 116491882 4418765 67597..69249 1 NC_008525.1 hypothetical protein 69249 4418765 PEPE_0064 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803617.1 67597 D 278197 CDS YP_803618.1 116491883 4418766 69239..70822 1 NC_008525.1 hypothetical protein 70822 4418766 PEPE_0065 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803618.1 69239 D 278197 CDS YP_803619.1 116491884 4418767 70815..71633 1 NC_008525.1 hypothetical protein 71633 4418767 PEPE_0066 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803619.1 70815 D 278197 CDS YP_803620.1 116491885 4418768 71661..73109 1 NC_008525.1 glycosyltransferase 73109 4418768 PEPE_0067 Pediococcus pentosaceus ATCC 25745 glycosyltransferase YP_803620.1 71661 D 278197 CDS YP_803621.1 116491886 4418769 73099..73947 1 NC_008525.1 hypothetical protein 73947 4418769 PEPE_0068 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803621.1 73099 D 278197 CDS YP_803622.1 116491887 4418770 74013..74744 1 NC_008525.1 hypothetical protein 74744 4418770 PEPE_0069 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803622.1 74013 D 278197 CDS YP_803623.1 116491888 4418771 74757..75554 1 NC_008525.1 hypothetical protein 75554 4418771 PEPE_0070 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803623.1 74757 D 278197 CDS YP_803624.1 116491889 4418772 75938..78595 1 NC_008525.1 outer membrane protein 78595 4418772 PEPE_0071 Pediococcus pentosaceus ATCC 25745 outer membrane protein YP_803624.1 75938 D 278197 CDS YP_803625.1 116491890 4418773 78691..81252 1 NC_008525.1 hypothetical protein 81252 4418773 PEPE_0072 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803625.1 78691 D 278197 CDS YP_803626.1 116491891 4418774 81450..82235 1 NC_008525.1 Converts glucose to D-glucono-1,5 lactone; glucose-1-dehydrogenase 82235 4418774 PEPE_0073 Pediococcus pentosaceus ATCC 25745 glucose-1-dehydrogenase YP_803626.1 81450 D 278197 CDS YP_803627.1 116491892 4418775 complement(82325..83206) 1 NC_008525.1 transcriptional regulator 83206 4418775 PEPE_0074 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_803627.1 82325 R 278197 CDS YP_803628.1 116491893 4418793 83353..84213 1 NC_008525.1 aldo/keto reductase 84213 4418793 PEPE_0075 Pediococcus pentosaceus ATCC 25745 aldo/keto reductase YP_803628.1 83353 D 278197 CDS YP_803629.1 116491894 4418794 84234..85277 1 NC_008525.1 threonine dehydrogenase related Zn-dependent dehydrogenase 85277 4418794 PEPE_0076 Pediococcus pentosaceus ATCC 25745 threonine dehydrogenase related Zn-dependent dehydrogenase YP_803629.1 84234 D 278197 CDS YP_803630.1 116491895 4418795 85747..86238 1 NC_008525.1 phosphotransferase system IIA component 86238 4418795 PEPE_0077 Pediococcus pentosaceus ATCC 25745 phosphotransferase system IIA component YP_803630.1 85747 D 278197 CDS YP_803631.1 116491896 4418796 86273..87103 1 NC_008525.1 beta-glucoside operon antiterminator 87103 4418796 PEPE_0078 Pediococcus pentosaceus ATCC 25745 beta-glucoside operon antiterminator YP_803631.1 86273 D 278197 CDS YP_803632.1 116491897 4418797 87130..88581 1 NC_008525.1 beta-glucosides PTS, EIIBC 88581 4418797 PEPE_0079 Pediococcus pentosaceus ATCC 25745 beta-glucosides PTS, EIIBC YP_803632.1 87130 D 278197 CDS YP_803633.1 116491898 4418798 88584..89342 1 NC_008525.1 hypothetical protein 89342 4418798 PEPE_0080 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803633.1 88584 D 278197 CDS YP_803634.1 116491899 4418799 complement(89722..90000) 1 NC_008525.1 prebacteriocin 90000 4418799 PEPE_0081 Pediococcus pentosaceus ATCC 25745 prebacteriocin YP_803634.1 89722 R 278197 CDS YP_803635.1 116491900 4418800 complement(90015..90197) 1 NC_008525.1 prebacteriocin 90197 4418800 PEPE_0082 Pediococcus pentosaceus ATCC 25745 prebacteriocin YP_803635.1 90015 R 278197 CDS YP_803636.1 116491901 4418801 90635..91933 1 NC_008525.1 signal transduction protein 91933 4418801 PEPE_0083 Pediococcus pentosaceus ATCC 25745 signal transduction protein YP_803636.1 90635 D 278197 CDS YP_803637.1 116491902 4418802 91952..92698 1 NC_008525.1 response regulator 92698 4418802 PEPE_0084 Pediococcus pentosaceus ATCC 25745 response regulator YP_803637.1 91952 D 278197 CDS YP_803638.1 116491903 4418803 92932..95106 1 NC_008525.1 bacteriocin-processing peptidase 95106 4418803 PEPE_0085 Pediococcus pentosaceus ATCC 25745 bacteriocin-processing peptidase YP_803638.1 92932 D 278197 CDS YP_803639.1 116491904 4418804 complement(95389..96303) 1 NC_008525.1 ABC-type metal ion transport system, periplasmic component/surface adhesin 96303 4418804 PEPE_0086 Pediococcus pentosaceus ATCC 25745 ABC-type metal ion transport system, periplasmic component/surface adhesin YP_803639.1 95389 R 278197 CDS YP_803640.1 116491905 4418805 complement(96374..96493) 1 NC_008525.1 hypothetical protein 96493 4418805 PEPE_0087 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803640.1 96374 R 278197 CDS YP_803641.1 116491906 4418806 97081..97473 1 NC_008525.1 hypothetical protein 97473 4418806 PEPE_0088 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803641.1 97081 D 278197 CDS YP_803642.1 116491907 4418807 complement(97565..98083) 1 NC_008525.1 acetyltransferase 98083 4418807 PEPE_0089 Pediococcus pentosaceus ATCC 25745 acetyltransferase YP_803642.1 97565 R 278197 CDS YP_803643.1 116491908 4418808 98313..100124 1 NC_008525.1 cation transport ATPase 100124 4418808 PEPE_0090 Pediococcus pentosaceus ATCC 25745 cation transport ATPase YP_803643.1 98313 D 278197 CDS YP_803644.1 116491909 4418809 100382..101677 1 NC_008525.1 cellobiose-specific PTS system IIC component 101677 4418809 PEPE_0091 Pediococcus pentosaceus ATCC 25745 cellobiose-specific PTS system IIC component YP_803644.1 100382 D 278197 CDS YP_803645.1 116491910 4418776 101661..102524 1 NC_008525.1 alpha/beta hydrolase superfamily protein 102524 4418776 PEPE_0092 Pediococcus pentosaceus ATCC 25745 alpha/beta hydrolase superfamily protein YP_803645.1 101661 D 278197 CDS YP_803646.1 116491911 4418777 complement(102635..103285) 1 NC_008525.1 hypothetical protein 103285 4418777 PEPE_0093 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803646.1 102635 R 278197 CDS YP_803647.1 116491912 4418778 complement(103637..104524) 1 NC_008525.1 transcriptional regulator 104524 4418778 PEPE_0094 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_803647.1 103637 R 278197 CDS YP_803648.1 116491913 4418779 104739..105767 1 NC_008525.1 dehydrogenase related protein 105767 4418779 PEPE_0095 Pediococcus pentosaceus ATCC 25745 dehydrogenase related protein YP_803648.1 104739 D 278197 CDS YP_803649.1 116491914 4418780 105791..106765 1 NC_008525.1 dehydrogenase related protein 106765 4418780 PEPE_0096 Pediococcus pentosaceus ATCC 25745 dehydrogenase related protein YP_803649.1 105791 D 278197 CDS YP_803650.1 116491915 4418781 106781..107347 1 NC_008525.1 acetyltransferase 107347 4418781 PEPE_0097 Pediococcus pentosaceus ATCC 25745 acetyltransferase YP_803650.1 106781 D 278197 CDS YP_803651.1 116491916 4418783 107735..108685 1 NC_008525.1 alpha/beta fold family hydrolase 108685 4418783 PEPE_0099 Pediococcus pentosaceus ATCC 25745 alpha/beta fold family hydrolase YP_803651.1 107735 D 278197 CDS YP_803652.1 116491917 4418784 108687..109649 1 NC_008525.1 diacylglycerol kinase family protein 109649 4418784 PEPE_0100 Pediococcus pentosaceus ATCC 25745 diacylglycerol kinase family protein YP_803652.1 108687 D 278197 CDS YP_803653.1 116491918 4418785 109733..110560 1 NC_008525.1 alpha/beta hydrolase superfamily protein 110560 4418785 PEPE_0101 Pediococcus pentosaceus ATCC 25745 alpha/beta hydrolase superfamily protein YP_803653.1 109733 D 278197 CDS YP_803654.1 116491919 4418786 110656..110976 1 NC_008525.1 Thiol-disulfide isomerase and thioredoxin 110976 4418786 PEPE_0102 Pediococcus pentosaceus ATCC 25745 Thiol-disulfide isomerase and thioredoxin YP_803654.1 110656 D 278197 CDS YP_803655.1 116491920 4418787 111311..112117 1 NC_008525.1 C-di-GMP-specific phosphodiesterase 112117 4418787 PEPE_0103 Pediococcus pentosaceus ATCC 25745 C-di-GMP-specific phosphodiesterase YP_803655.1 111311 D 278197 CDS YP_803656.1 116491921 4418788 112119..112622 1 NC_008525.1 hypothetical protein 112622 4418788 PEPE_0104 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803656.1 112119 D 278197 CDS YP_803657.1 116491922 4418789 112632..113957 1 NC_008525.1 glycosyltransferase 113957 4418789 PEPE_0105 Pediococcus pentosaceus ATCC 25745 glycosyltransferase YP_803657.1 112632 D 278197 CDS YP_803658.1 116491923 4418790 114093..115529 1 NC_008525.1 Beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase 115529 4418790 PEPE_0106 Pediococcus pentosaceus ATCC 25745 Beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase YP_803658.1 114093 D 278197 CDS YP_803659.1 116491924 4418791 115638..116438 1 NC_008525.1 hypothetical protein 116438 4418791 PEPE_0107 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803659.1 115638 D 278197 CDS YP_803660.1 116491925 4418745 complement(121990..123141) 1 NC_008525.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 123141 4418745 PEPE_0111 Pediococcus pentosaceus ATCC 25745 succinyl-diaminopimelate desuccinylase YP_803660.1 121990 R 278197 CDS YP_803661.1 116491926 4418746 123321..124337 1 NC_008525.1 oxidoreductase, aryl-alcohol dehydrogenase related 124337 4418746 PEPE_0112 Pediococcus pentosaceus ATCC 25745 oxidoreductase, aryl-alcohol dehydrogenase related YP_803661.1 123321 D 278197 CDS YP_803662.1 116491927 4418747 124389..125561 1 NC_008525.1 galactokinase 125561 4418747 PEPE_0113 Pediococcus pentosaceus ATCC 25745 galactokinase YP_803662.1 124389 D 278197 CDS YP_803663.1 116491928 4418748 125793..126374 1 NC_008525.1 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24-like 126374 4418748 PEPE_0114 Pediococcus pentosaceus ATCC 25745 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24-like YP_803663.1 125793 D 278197 CDS YP_803664.1 116491929 4418749 126609..126827 1 NC_008525.1 hypothetical protein 126827 4418749 PEPE_0115 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803664.1 126609 D 278197 CDS YP_803665.1 116491930 4418750 127386..127526 1 NC_008525.1 hypothetical protein 127526 4418750 PEPE_0116 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803665.1 127386 D 278197 CDS YP_803666.1 116491931 4418751 128009..133039 1 NC_008525.1 hypothetical protein 133039 4418751 PEPE_0117 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803666.1 128009 D 278197 CDS YP_803667.1 116491932 4418752 133426..142479 1 NC_008525.1 adhesion exoprotein 142479 4418752 PEPE_0118 Pediococcus pentosaceus ATCC 25745 adhesion exoprotein YP_803667.1 133426 D 278197 CDS YP_803668.1 116491933 4418753 complement(142598..143326) 1 NC_008525.1 AraC-type DNA-binding transcriptional regulator 143326 4418753 PEPE_0119 Pediococcus pentosaceus ATCC 25745 AraC-type DNA-binding transcriptional regulator YP_803668.1 142598 R 278197 CDS YP_803669.1 116491934 4418754 complement(144335..144580) 1 NC_008525.1 hypothetical protein 144580 4418754 PEPE_0120 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803669.1 144335 R 278197 CDS YP_803670.1 116491935 4418755 complement(144681..145412) 1 NC_008525.1 hypothetical protein 145412 4418755 PEPE_0121 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803670.1 144681 R 278197 CDS YP_803671.1 116491936 4418756 complement(145419..145868) 1 NC_008525.1 response regulator 145868 4418756 PEPE_0122 Pediococcus pentosaceus ATCC 25745 response regulator YP_803671.1 145419 R 278197 CDS YP_803672.1 116491937 4418757 complement(146028..147701) 1 NC_008525.1 hypothetical protein 147701 4418757 PEPE_0123 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803672.1 146028 R 278197 CDS YP_803673.1 116491938 4417122 147790..149235 1 NC_008525.1 hypothetical protein 149235 4417122 PEPE_0124 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803673.1 147790 D 278197 CDS YP_803674.1 116491939 4417123 149572..150645 1 NC_008525.1 Beta-lactamase class C related penicillin binding protein 150645 4417123 PEPE_0125 Pediococcus pentosaceus ATCC 25745 Beta-lactamase class C related penicillin binding protein YP_803674.1 149572 D 278197 CDS YP_803675.1 116491940 4417124 150668..151687 1 NC_008525.1 glycosyltransferase 151687 4417124 PEPE_0126 Pediococcus pentosaceus ATCC 25745 glycosyltransferase YP_803675.1 150668 D 278197 CDS YP_803676.1 116491941 4417125 151719..151883 1 NC_008525.1 hypothetical protein 151883 4417125 PEPE_0127 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803676.1 151719 D 278197 CDS YP_803677.1 116491942 4417126 151946..153076 1 NC_008525.1 outer membrane protein 153076 4417126 PEPE_0128 Pediococcus pentosaceus ATCC 25745 outer membrane protein YP_803677.1 151946 D 278197 CDS YP_803678.1 116491943 4417127 complement(153181..154617) 1 NC_008525.1 major facilitator superfamily permease 154617 4417127 PEPE_0129 Pediococcus pentosaceus ATCC 25745 major facilitator superfamily permease YP_803678.1 153181 R 278197 CDS YP_803679.1 116491944 4417128 complement(154851..155897) 1 NC_008525.1 aspartate semialdehyde dehydrogenase 155897 4417128 PEPE_0130 Pediococcus pentosaceus ATCC 25745 aspartate semialdehyde dehydrogenase YP_803679.1 154851 R 278197 CDS YP_803680.1 116491945 4417129 complement(155899..157080) 1 NC_008525.1 aromatic amino acid aminotransferase 157080 4417129 PEPE_0131 Pediococcus pentosaceus ATCC 25745 aromatic amino acid aminotransferase YP_803680.1 155899 R 278197 CDS YP_803681.1 116491946 4417130 complement(157093..157857) 1 NC_008525.1 dihydrodipicolinate reductase 157857 4417130 PEPE_0132 Pediococcus pentosaceus ATCC 25745 dihydrodipicolinate reductase YP_803681.1 157093 R 278197 CDS YP_803682.1 116491947 4417131 complement(157873..158772) 1 NC_008525.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 158772 4417131 PEPE_0133 Pediococcus pentosaceus ATCC 25745 dihydrodipicolinate synthase YP_803682.1 157873 R 278197 CDS YP_803683.1 116491948 4417132 complement(158775..159929) 1 NC_008525.1 metal-dependent amidase/aminoacylase/carboxypeptidase 159929 4417132 PEPE_0134 Pediococcus pentosaceus ATCC 25745 metal-dependent amidase/aminoacylase/carboxypeptidase YP_803683.1 158775 R 278197 CDS YP_803684.1 116491949 4417133 complement(159943..160653) 1 NC_008525.1 tetrahydrodipicolinate N-succinyltransferase 160653 4417133 PEPE_0135 Pediococcus pentosaceus ATCC 25745 tetrahydrodipicolinate N-succinyltransferase YP_803684.1 159943 R 278197 CDS YP_803685.1 116491950 4417134 complement(160674..161966) 1 NC_008525.1 diaminopimelate decarboxylase 161966 4417134 PEPE_0136 Pediococcus pentosaceus ATCC 25745 diaminopimelate decarboxylase YP_803685.1 160674 R 278197 CDS YP_803686.1 116491951 4417135 162431..163810 1 NC_008525.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive; aspartate kinase 163810 4417135 PEPE_0137 Pediococcus pentosaceus ATCC 25745 aspartate kinase YP_803686.1 162431 D 278197 CDS YP_803687.1 116491952 4417136 163810..164799 1 NC_008525.1 diaminopimelate epimerase 164799 4417136 PEPE_0138 Pediococcus pentosaceus ATCC 25745 diaminopimelate epimerase YP_803687.1 163810 D 278197 CDS YP_803688.1 116491953 4417137 164945..166147 1 NC_008525.1 cyanate permease 166147 4417137 PEPE_0139 Pediococcus pentosaceus ATCC 25745 cyanate permease YP_803688.1 164945 D 278197 CDS YP_803689.1 116491954 4417138 complement(166186..166932) 1 NC_008525.1 transcriptional regulator 166932 4417138 PEPE_0140 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_803689.1 166186 R 278197 CDS YP_803690.1 116491955 4418655 167049..167984 1 NC_008525.1 fructose-1-phosphate kinase-like protein 167984 4418655 PEPE_0141 Pediococcus pentosaceus ATCC 25745 fructose-1-phosphate kinase-like protein YP_803690.1 167049 D 278197 CDS YP_803691.1 116491956 4418656 167981..169870 1 NC_008525.1 phosphotransferase system fructose-specific component IIB 169870 4418656 PEPE_0142 Pediococcus pentosaceus ATCC 25745 phosphotransferase system fructose-specific component IIB YP_803691.1 167981 D 278197 CDS YP_803692.1 116491957 4418657 169986..170978 1 NC_008525.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources; tagatose 1,6-diphosphate aldolase 170978 4418657 PEPE_0143 Pediococcus pentosaceus ATCC 25745 tagatose 1,6-diphosphate aldolase YP_803692.1 169986 D 278197 CDS YP_803693.1 116491958 4418658 171149..173065 1 NC_008525.1 fructose-1,6-bisphosphatase 173065 4418658 PEPE_0144 Pediococcus pentosaceus ATCC 25745 fructose-1,6-bisphosphatase YP_803693.1 171149 D 278197 CDS YP_803694.1 116491959 4418659 complement(173055..173960) 1 NC_008525.1 Mg2+ and Co2+ transporter 173960 4418659 PEPE_0145 Pediococcus pentosaceus ATCC 25745 Mg2+ and Co2+ transporter YP_803694.1 173055 R 278197 CDS YP_803695.1 116491960 4418660 174070..174963 1 NC_008525.1 Short-chain alcohol dehydrogenase 174963 4418660 PEPE_0146 Pediococcus pentosaceus ATCC 25745 Short-chain alcohol dehydrogenase YP_803695.1 174070 D 278197 CDS YP_803696.1 116491961 4418661 174976..175149 1 NC_008525.1 hypothetical protein 175149 4418661 PEPE_0147 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803696.1 174976 D 278197 CDS YP_803697.1 116491962 4418662 complement(175229..176359) 1 NC_008525.1 hypothetical protein 176359 4418662 PEPE_0148 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803697.1 175229 R 278197 CDS YP_803698.1 116491963 4418663 complement(176461..177264) 1 NC_008525.1 hypothetical protein 177264 4418663 PEPE_0149 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803698.1 176461 R 278197 CDS YP_803699.1 116491964 4418664 177639..178316 1 NC_008525.1 Mg2+ transporter 178316 4418664 PEPE_0150 Pediococcus pentosaceus ATCC 25745 Mg2+ transporter YP_803699.1 177639 D 278197 CDS YP_803700.1 116491965 4418665 complement(178383..179195) 1 NC_008525.1 RpiR family transcriptional regulator 179195 4418665 PEPE_0151 Pediococcus pentosaceus ATCC 25745 RpiR family transcriptional regulator YP_803700.1 178383 R 278197 CDS YP_803701.1 116491966 4418666 complement(179297..179986) 1 NC_008525.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 179986 4418666 PEPE_0152 Pediococcus pentosaceus ATCC 25745 N-acetylmannosamine-6-phosphate 2-epimerase YP_803701.1 179297 R 278197 CDS YP_803702.1 116491967 4418667 complement(180274..181608) 1 NC_008525.1 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, related enzyme 181608 4418667 PEPE_0153 Pediococcus pentosaceus ATCC 25745 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, related enzyme YP_803702.1 180274 R 278197 CDS YP_803703.1 116491968 4418668 complement(181775..182623) 1 NC_008525.1 AraC family transcriptional regulator 182623 4418668 PEPE_0154 Pediococcus pentosaceus ATCC 25745 AraC family transcriptional regulator YP_803703.1 181775 R 278197 CDS YP_803704.1 116491969 4418669 182776..184758 1 NC_008525.1 hypothetical protein 184758 4418669 PEPE_0155 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803704.1 182776 D 278197 CDS YP_803705.1 116491970 4418670 184771..186117 1 NC_008525.1 Na+/xyloside symporter related transporter 186117 4418670 PEPE_0156 Pediococcus pentosaceus ATCC 25745 Na+/xyloside symporter related transporter YP_803705.1 184771 D 278197 CDS YP_803706.1 116491971 4418671 186391..187467 1 NC_008525.1 GntR family transcriptional regulator 187467 4418671 PEPE_0157 Pediococcus pentosaceus ATCC 25745 GntR family transcriptional regulator YP_803706.1 186391 D 278197 CDS YP_803707.1 116491972 4418672 complement(187926..188645) 1 NC_008525.1 GntR family transcriptional regulator 188645 4418672 PEPE_0158 Pediococcus pentosaceus ATCC 25745 GntR family transcriptional regulator YP_803707.1 187926 R 278197 CDS YP_803708.1 116491973 4418638 complement(188929..189249) 1 NC_008525.1 acetyltransferase 189249 4418638 PEPE_0159 Pediococcus pentosaceus ATCC 25745 acetyltransferase YP_803708.1 188929 R 278197 CDS YP_803709.1 116491974 4418639 complement(189260..190663) 1 NC_008525.1 C4-dicarboxylate transporter 190663 4418639 PEPE_0160 Pediococcus pentosaceus ATCC 25745 C4-dicarboxylate transporter YP_803709.1 189260 R 278197 CDS YP_803710.1 116491975 4418640 complement(190675..191610) 1 NC_008525.1 inosine-uridine nucleoside N-ribohydrolase 191610 4418640 PEPE_0161 Pediococcus pentosaceus ATCC 25745 inosine-uridine nucleoside N-ribohydrolase YP_803710.1 190675 R 278197 CDS YP_803711.1 116491976 4418641 192107..193477 1 NC_008525.1 D-xylose proton-symporter 193477 4418641 PEPE_0162 Pediococcus pentosaceus ATCC 25745 D-xylose proton-symporter YP_803711.1 192107 D 278197 CDS YP_803712.1 116491977 4418642 193498..195093 1 NC_008525.1 L-ribulokinase (putative) 195093 4418642 PEPE_0163 Pediococcus pentosaceus ATCC 25745 L-ribulokinase (putative) YP_803712.1 193498 D 278197 CDS YP_803713.1 116491978 4418643 195108..195836 1 NC_008525.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 195836 araD 4418643 araD Pediococcus pentosaceus ATCC 25745 L-ribulose-5-phosphate 4-epimerase YP_803713.1 195108 D 278197 CDS YP_803714.1 116491979 4418644 195866..197290 1 NC_008525.1 catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase 197290 4418644 PEPE_0165 Pediococcus pentosaceus ATCC 25745 L-arabinose isomerase YP_803714.1 195866 D 278197 CDS YP_803715.1 116491980 4418645 197497..198603 1 NC_008525.1 L-alanine dehydrogenase 198603 4418645 PEPE_0166 Pediococcus pentosaceus ATCC 25745 L-alanine dehydrogenase YP_803715.1 197497 D 278197 CDS YP_803716.1 116491981 4418646 198620..199675 1 NC_008525.1 catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic; threonine dehydratase 199675 4418646 PEPE_0167 Pediococcus pentosaceus ATCC 25745 threonine dehydratase YP_803716.1 198620 D 278197 CDS YP_803717.1 116491982 4418647 199708..201627 1 NC_008525.1 hypothetical protein 201627 4418647 PEPE_0168 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803717.1 199708 D 278197 CDS YP_803718.1 116491983 4418648 201611..201973 1 NC_008525.1 hypothetical protein 201973 4418648 PEPE_0169 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803718.1 201611 D 278197 CDS YP_803719.1 116491984 4418649 201993..203420 1 NC_008525.1 dipeptidase A 203420 4418649 PEPE_0170 Pediococcus pentosaceus ATCC 25745 dipeptidase A YP_803719.1 201993 D 278197 CDS YP_803720.1 116491985 4418650 203639..204853 1 NC_008525.1 GntR family transcriptional regulator 204853 4418650 PEPE_0171 Pediococcus pentosaceus ATCC 25745 GntR family transcriptional regulator YP_803720.1 203639 D 278197 CDS YP_803721.1 116491986 4418651 205015..205695 1 NC_008525.1 N-acetylgalactosamine PTS, EIIC 205695 4418651 PEPE_0172 Pediococcus pentosaceus ATCC 25745 N-acetylgalactosamine PTS, EIIC YP_803721.1 205015 D 278197 CDS YP_803722.1 116491987 4418652 205685..206485 1 NC_008525.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N-acetylgalactosamine transport; PTS system N-acetylgalactosamine-specific transporter subunit IID 206485 4418652 PEPE_0173 Pediococcus pentosaceus ATCC 25745 PTS system N-acetylgalactosamine-specific transporter subunit IID YP_803722.1 205685 D 278197 CDS YP_803723.1 116491988 4418653 206497..206919 1 NC_008525.1 phosphotransferase system, mannose/fructose-specific component IIA 206919 4418653 PEPE_0174 Pediococcus pentosaceus ATCC 25745 phosphotransferase system, mannose/fructose-specific component IIA YP_803723.1 206497 D 278197 CDS YP_803724.1 116491989 4418654 207256..207993 1 NC_008525.1 GntR family transcriptional regulator 207993 4418654 PEPE_0175 Pediococcus pentosaceus ATCC 25745 GntR family transcriptional regulator YP_803724.1 207256 D 278197 CDS YP_803725.1 116491990 4418620 207980..208672 1 NC_008525.1 GntR family transcriptional regulator 208672 4418620 PEPE_0176 Pediococcus pentosaceus ATCC 25745 GntR family transcriptional regulator YP_803725.1 207980 D 278197 CDS YP_803726.1 116491991 4418622 209176..210015 1 NC_008525.1 mannose-specific PTS system component IIC 210015 4418622 PEPE_0178 Pediococcus pentosaceus ATCC 25745 mannose-specific PTS system component IIC YP_803726.1 209176 D 278197 CDS YP_803727.1 116491992 4418623 209996..210817 1 NC_008525.1 mannose-specific PTS system component IID 210817 4418623 PEPE_0179 Pediococcus pentosaceus ATCC 25745 mannose-specific PTS system component IID YP_803727.1 209996 D 278197 CDS YP_803728.1 116491993 4418626 complement(213441..214562) 1 NC_008525.1 Zn-dependent alcohol dehydrogenase 214562 4418626 PEPE_0182 Pediococcus pentosaceus ATCC 25745 Zn-dependent alcohol dehydrogenase YP_803728.1 213441 R 278197 CDS YP_803729.1 116491994 4418627 214745..215602 1 NC_008525.1 transcriptional regulator/sugar kinase 215602 4418627 PEPE_0183 Pediococcus pentosaceus ATCC 25745 transcriptional regulator/sugar kinase YP_803729.1 214745 D 278197 CDS YP_803730.1 116491995 4418628 complement(215704..217986) 1 NC_008525.1 catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides; alpha-xylosidase YicI 217986 4418628 PEPE_0184 Pediococcus pentosaceus ATCC 25745 alpha-xylosidase YicI YP_803730.1 215704 R 278197 CDS YP_803731.1 116491996 4418629 218212..219597 1 NC_008525.1 Na+/xyloside symporter related transporter 219597 4418629 PEPE_0185 Pediococcus pentosaceus ATCC 25745 Na+/xyloside symporter related transporter YP_803731.1 218212 D 278197 CDS YP_803732.1 116491997 4418630 219621..220772 1 NC_008525.1 transcriptional regulator/sugar kinase, xylose operon regulator 220772 4418630 PEPE_0186 Pediococcus pentosaceus ATCC 25745 transcriptional regulator/sugar kinase, xylose operon regulator YP_803732.1 219621 D 278197 CDS YP_803733.1 116491998 4418631 220787..222130 1 NC_008525.1 catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase 222130 4418631 PEPE_0187 Pediococcus pentosaceus ATCC 25745 xylose isomerase YP_803733.1 220787 D 278197 CDS YP_803734.1 116491999 4418632 222180..223685 1 NC_008525.1 xylulokinase 223685 4418632 PEPE_0188 Pediococcus pentosaceus ATCC 25745 xylulokinase YP_803734.1 222180 D 278197 CDS YP_803735.1 116492000 4418633 223883..224917 1 NC_008525.1 catalyzes the formation of putrescine from carbamoyl-putrescine during agmatine degradation; putrescine carbamoyltransferase 224917 4418633 PEPE_0189 Pediococcus pentosaceus ATCC 25745 putrescine carbamoyltransferase YP_803735.1 223883 D 278197 CDS YP_803736.1 116492001 4418634 224962..226347 1 NC_008525.1 amino acid transporter 226347 4418634 PEPE_0190 Pediococcus pentosaceus ATCC 25745 amino acid transporter YP_803736.1 224962 D 278197 CDS YP_803737.1 116492002 4418635 226344..227438 1 NC_008525.1 catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis; agmatine deiminase 227438 4418635 PEPE_0191 Pediococcus pentosaceus ATCC 25745 agmatine deiminase YP_803737.1 226344 D 278197 CDS YP_803738.1 116492003 4418636 227517..228461 1 NC_008525.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 228461 4418636 PEPE_0192 Pediococcus pentosaceus ATCC 25745 carbamate kinase YP_803738.1 227517 D 278197 CDS YP_803739.1 116492004 4418637 228491..229582 1 NC_008525.1 peptidylarginine deiminase-like protein 229582 4418637 PEPE_0193 Pediococcus pentosaceus ATCC 25745 peptidylarginine deiminase-like protein YP_803739.1 228491 D 278197 CDS YP_803740.1 116492005 4418603 229595..230176 1 NC_008525.1 transcriptional regulator 230176 4418603 PEPE_0194 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_803740.1 229595 D 278197 CDS YP_803741.1 116492006 4418604 230570..233311 1 NC_008525.1 transcriptional regulator 233311 4418604 PEPE_0195 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_803741.1 230570 D 278197 CDS YP_803742.1 116492007 4418606 234307..235092 1 NC_008525.1 mannose-specific PTS system component IIC 235092 4418606 PEPE_0197 Pediococcus pentosaceus ATCC 25745 mannose-specific PTS system component IIC YP_803742.1 234307 D 278197 CDS YP_803743.1 116492008 4418607 235107..235940 1 NC_008525.1 mannose-specific PTS system component IID 235940 4418607 PEPE_0198 Pediococcus pentosaceus ATCC 25745 mannose-specific PTS system component IID YP_803743.1 235107 D 278197 CDS YP_803744.1 116492009 4418610 237847..238842 1 NC_008525.1 LacI family transcription regulator 238842 4418610 PEPE_0201 Pediococcus pentosaceus ATCC 25745 LacI family transcription regulator YP_803744.1 237847 D 278197 CDS YP_803745.1 116492010 4418611 238990..240018 1 NC_008525.1 aldose 1-epimerase 240018 4418611 PEPE_0202 Pediococcus pentosaceus ATCC 25745 aldose 1-epimerase YP_803745.1 238990 D 278197 CDS YP_803746.1 116492011 4418612 240309..242255 1 NC_008525.1 Na+/xyloside symporter related transporter 242255 4418612 PEPE_0203 Pediococcus pentosaceus ATCC 25745 Na+/xyloside symporter related transporter YP_803746.1 240309 D 278197 CDS YP_803747.1 116492012 4418613 complement(242363..243322) 1 NC_008525.1 Beta-galactosidase 243322 4418613 PEPE_0204 Pediococcus pentosaceus ATCC 25745 Beta-galactosidase YP_803747.1 242363 R 278197 CDS YP_803748.1 116492013 4418614 complement(243306..245186) 1 NC_008525.1 Beta-galactosidase 245186 4418614 PEPE_0205 Pediococcus pentosaceus ATCC 25745 Beta-galactosidase YP_803748.1 243306 R 278197 CDS YP_803749.1 116492014 4418615 245467..246630 1 NC_008525.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase 246630 4418615 PEPE_0206 Pediococcus pentosaceus ATCC 25745 galactokinase YP_803749.1 245467 D 278197 CDS YP_803750.1 116492015 4418616 246687..247691 1 NC_008525.1 UDP-galactose 4-epimerase 247691 4418616 PEPE_0207 Pediococcus pentosaceus ATCC 25745 UDP-galactose 4-epimerase YP_803750.1 246687 D 278197 CDS YP_803751.1 116492016 4418617 247691..249151 1 NC_008525.1 catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism; galactose-1-phosphate uridylyltransferase 249151 4418617 PEPE_0208 Pediococcus pentosaceus ATCC 25745 galactose-1-phosphate uridylyltransferase YP_803751.1 247691 D 278197 CDS YP_803752.1 116492017 4418618 249343..250725 1 NC_008525.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 250725 fumC 4418618 fumC Pediococcus pentosaceus ATCC 25745 fumarate hydratase YP_803752.1 249343 D 278197 CDS YP_803753.1 116492018 4418619 250738..252156 1 NC_008525.1 di- and tricarboxylate transporter 252156 4418619 PEPE_0210 Pediococcus pentosaceus ATCC 25745 di- and tricarboxylate transporter YP_803753.1 250738 D 278197 CDS YP_803754.1 116492019 4418585 252255..252839 1 NC_008525.1 peptidyl-prolyl cis-trans isomerase 252839 4418585 PEPE_0211 Pediococcus pentosaceus ATCC 25745 peptidyl-prolyl cis-trans isomerase YP_803754.1 252255 D 278197 CDS YP_803755.1 116492020 4418586 complement(252880..253734) 1 NC_008525.1 alpha-beta hydrolase family esterase 253734 4418586 PEPE_0212 Pediococcus pentosaceus ATCC 25745 alpha-beta hydrolase family esterase YP_803755.1 252880 R 278197 CDS YP_803756.1 116492021 4418587 complement(253883..255067) 1 NC_008525.1 major facilitator superfamily permease 255067 4418587 PEPE_0213 Pediococcus pentosaceus ATCC 25745 major facilitator superfamily permease YP_803756.1 253883 R 278197 CDS YP_803757.1 116492022 4418588 255222..255731 1 NC_008525.1 small molecule binding protein 255731 4418588 PEPE_0214 Pediococcus pentosaceus ATCC 25745 small molecule binding protein YP_803757.1 255222 D 278197 CDS YP_803758.1 116492023 4418589 255795..255953 1 NC_008525.1 hypothetical protein 255953 4418589 PEPE_0215 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803758.1 255795 D 278197 CDS YP_803759.1 116492024 4418590 complement(256037..257686) 1 NC_008525.1 lipopolysaccharide biosynthesis glycosyltransferase 257686 4418590 PEPE_0216 Pediococcus pentosaceus ATCC 25745 lipopolysaccharide biosynthesis glycosyltransferase YP_803759.1 256037 R 278197 CDS YP_803760.1 116492025 4418591 257866..258150 1 NC_008525.1 hypothetical protein 258150 4418591 PEPE_0217 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803760.1 257866 D 278197 CDS YP_803761.1 116492026 4418592 complement(258293..259213) 1 NC_008525.1 lactate dehydrogenase 259213 4418592 PEPE_0218 Pediococcus pentosaceus ATCC 25745 lactate dehydrogenase YP_803761.1 258293 R 278197 CDS YP_803762.1 116492027 4418593 complement(259285..259656) 1 NC_008525.1 hypothetical protein 259656 4418593 PEPE_0219 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803762.1 259285 R 278197 CDS YP_803763.1 116492028 4418594 complement(259668..260687) 1 NC_008525.1 hypothetical protein 260687 4418594 PEPE_0220 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803763.1 259668 R 278197 CDS YP_803764.1 116492029 4418595 complement(260817..261821) 1 NC_008525.1 aldose 1-epimerase 261821 4418595 PEPE_0221 Pediococcus pentosaceus ATCC 25745 aldose 1-epimerase YP_803764.1 260817 R 278197 CDS YP_803765.1 116492030 4418596 261970..262239 1 NC_008525.1 SSU ribosomal protein S14P 262239 4418596 PEPE_0222 Pediococcus pentosaceus ATCC 25745 SSU ribosomal protein S14P YP_803765.1 261970 D 278197 CDS YP_803766.1 116492031 4418597 262331..263314 1 NC_008525.1 DMT family permease 263314 4418597 PEPE_0223 Pediococcus pentosaceus ATCC 25745 DMT family permease YP_803766.1 262331 D 278197 CDS YP_803767.1 116492032 4418598 263469..265070 1 NC_008525.1 glycosyltransferase 265070 4418598 PEPE_0224 Pediococcus pentosaceus ATCC 25745 glycosyltransferase YP_803767.1 263469 D 278197 CDS YP_803768.1 116492033 4418599 265070..266569 1 NC_008525.1 glycosyltransferase 266569 4418599 PEPE_0225 Pediococcus pentosaceus ATCC 25745 glycosyltransferase YP_803768.1 265070 D 278197 CDS YP_803769.1 116492034 4418600 complement(266627..267232) 1 NC_008525.1 oxidoreductase 267232 4418600 PEPE_0226 Pediococcus pentosaceus ATCC 25745 oxidoreductase YP_803769.1 266627 R 278197 CDS YP_803770.1 116492035 4418601 267390..268157 1 NC_008525.1 hypothetical protein 268157 4418601 PEPE_0227 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803770.1 267390 D 278197 CDS YP_803771.1 116492036 4418602 complement(268227..269036) 1 NC_008525.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 269036 4418602 PEPE_0228 Pediococcus pentosaceus ATCC 25745 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase YP_803771.1 268227 R 278197 CDS YP_803772.1 116492037 4418572 complement(269091..270134) 1 NC_008525.1 hypothetical protein 270134 4418572 PEPE_0229 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803772.1 269091 R 278197 CDS YP_803773.1 116492038 4418573 270310..271401 1 NC_008525.1 hypothetical protein 271401 4418573 PEPE_0230 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803773.1 270310 D 278197 CDS YP_803774.1 116492039 4418574 271667..272977 1 NC_008525.1 cellobiose-specific PTS system IIC component 272977 4418574 PEPE_0231 Pediococcus pentosaceus ATCC 25745 cellobiose-specific PTS system IIC component YP_803774.1 271667 D 278197 CDS YP_803775.1 116492040 4418575 273101..273559 1 NC_008525.1 hypothetical protein 273559 4418575 PEPE_0232 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803775.1 273101 D 278197 CDS YP_803776.1 116492041 4418576 273665..274303 1 NC_008525.1 saccharopine dehydrogenase related protein 274303 4418576 PEPE_0233 Pediococcus pentosaceus ATCC 25745 saccharopine dehydrogenase related protein YP_803776.1 273665 D 278197 CDS YP_803777.1 116492042 4418577 274447..275844 1 NC_008525.1 divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV 275844 4418577 PEPE_0234 Pediococcus pentosaceus ATCC 25745 dipeptidase PepV YP_803777.1 274447 D 278197 CDS YP_803778.1 116492043 4418578 276150..277403 1 NC_008525.1 tyrosyl-tRNA synthetase 277403 4418578 PEPE_0235 Pediococcus pentosaceus ATCC 25745 tyrosyl-tRNA synthetase YP_803778.1 276150 D 278197 CDS YP_803779.1 116492044 4418583 283174..284538 1 NC_008525.1 purine-cytosine permease related protein 284538 4418583 PEPE_0240 Pediococcus pentosaceus ATCC 25745 purine-cytosine permease related protein YP_803779.1 283174 D 278197 CDS YP_803780.1 116492045 4418584 284528..285760 1 NC_008525.1 dihydroorotase 285760 4418584 PEPE_0241 Pediococcus pentosaceus ATCC 25745 dihydroorotase YP_803780.1 284528 D 278197 CDS YP_803781.1 116492046 4418554 285855..287384 1 NC_008525.1 ABC-type proline/glycine betaine transport system, permease and substrate binding protein 287384 4418554 PEPE_0242 Pediococcus pentosaceus ATCC 25745 ABC-type proline/glycine betaine transport system, permease and substrate binding protein YP_803781.1 285855 D 278197 CDS YP_803782.1 116492047 4418555 287384..288349 1 NC_008525.1 ABC-type proline/glycine betaine transport system, ATPase component 288349 4418555 PEPE_0243 Pediococcus pentosaceus ATCC 25745 ABC-type proline/glycine betaine transport system, ATPase component YP_803782.1 287384 D 278197 CDS YP_803783.1 116492048 4418556 288364..289698 1 NC_008525.1 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, related enzyme 289698 4418556 PEPE_0244 Pediococcus pentosaceus ATCC 25745 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, related enzyme YP_803783.1 288364 D 278197 CDS YP_803784.1 116492049 4418557 289755..290915 1 NC_008525.1 Kef-type K+ transport system, membrane component 290915 4418557 PEPE_0245 Pediococcus pentosaceus ATCC 25745 Kef-type K+ transport system, membrane component YP_803784.1 289755 D 278197 CDS YP_803785.1 116492050 4418558 291055..294480 1 NC_008525.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 294480 4418558 PEPE_0246 Pediococcus pentosaceus ATCC 25745 pyruvate carboxylase YP_803785.1 291055 D 278197 CDS YP_803786.1 116492051 4418559 294485..295660 1 NC_008525.1 aminotransferase 295660 4418559 PEPE_0247 Pediococcus pentosaceus ATCC 25745 aminotransferase YP_803786.1 294485 D 278197 CDS YP_803787.1 116492052 4418560 complement(295714..296439) 1 NC_008525.1 hypothetical protein 296439 4418560 PEPE_0248 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803787.1 295714 R 278197 CDS YP_803788.1 116492053 4418561 296579..297463 1 NC_008525.1 LysR family transcriptional regulator 297463 4418561 PEPE_0249 Pediococcus pentosaceus ATCC 25745 LysR family transcriptional regulator YP_803788.1 296579 D 278197 CDS YP_803789.1 116492054 4418562 297576..299051 1 NC_008525.1 3-polyprenyl-4-hydroxybenzoate decarboxylase related decarboxylase 299051 4418562 PEPE_0250 Pediococcus pentosaceus ATCC 25745 3-polyprenyl-4-hydroxybenzoate decarboxylase related decarboxylase YP_803789.1 297576 D 278197 CDS YP_803790.1 116492055 4418563 299073..299669 1 NC_008525.1 3-polyprenyl-4-hydroxybenzoate decarboxylase 299669 4418563 PEPE_0251 Pediococcus pentosaceus ATCC 25745 3-polyprenyl-4-hydroxybenzoate decarboxylase YP_803790.1 299073 D 278197 CDS YP_803791.1 116492056 4418564 299641..300084 1 NC_008525.1 hypothetical protein 300084 4418564 PEPE_0252 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803791.1 299641 D 278197 CDS YP_803792.1 116492057 4418565 300239..301174 1 NC_008525.1 NADPH:quinone reductase related Zn-dependent oxidoreductase 301174 4418565 PEPE_0253 Pediococcus pentosaceus ATCC 25745 NADPH:quinone reductase related Zn-dependent oxidoreductase YP_803792.1 300239 D 278197 CDS YP_803793.1 116492058 4418566 301301..302239 1 NC_008525.1 hypothetical protein 302239 4418566 PEPE_0254 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803793.1 301301 D 278197 CDS YP_803794.1 116492059 4418567 complement(302256..304559) 1 NC_008525.1 superfamily I DNA/RNA helicase 304559 4418567 PEPE_0255 Pediococcus pentosaceus ATCC 25745 superfamily I DNA/RNA helicase YP_803794.1 302256 R 278197 CDS YP_803795.1 116492060 4418568 304896..305924 1 NC_008525.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase II 305924 4418568 PEPE_0256 Pediococcus pentosaceus ATCC 25745 tryptophanyl-tRNA synthetase II YP_803795.1 304896 D 278197 CDS YP_803796.1 116492061 4418569 306083..307012 1 NC_008525.1 exopolyphosphatase 307012 4418569 PEPE_0257 Pediococcus pentosaceus ATCC 25745 exopolyphosphatase YP_803796.1 306083 D 278197 CDS YP_803797.1 116492062 4418570 307018..308250 1 NC_008525.1 3-hydroxy-3-methylglutaryl-coenzyme A reductase 308250 4418570 PEPE_0258 Pediococcus pentosaceus ATCC 25745 3-hydroxy-3-methylglutaryl-coenzyme A reductase YP_803797.1 307018 D 278197 CDS YP_803798.1 116492063 4418571 308237..309193 1 NC_008525.1 hypothetical protein 309193 4418571 PEPE_0259 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803798.1 308237 D 278197 CDS YP_803799.1 116492064 4418537 complement(309243..309650) 1 NC_008525.1 hypothetical protein 309650 4418537 PEPE_0260 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803799.1 309243 R 278197 CDS YP_803800.1 116492065 4418538 complement(309719..310543) 1 NC_008525.1 XRE family transcriptional regulator 310543 4418538 PEPE_0261 Pediococcus pentosaceus ATCC 25745 XRE family transcriptional regulator YP_803800.1 309719 R 278197 CDS YP_803801.1 116492066 4418539 complement(310608..310796) 1 NC_008525.1 putative stress-responsive transcriptional regulator 310796 4418539 PEPE_0262 Pediococcus pentosaceus ATCC 25745 putative stress-responsive transcriptional regulator YP_803801.1 310608 R 278197 CDS YP_803802.1 116492067 4418540 310889..310948 1 NC_008525.1 hypothetical protein 310948 4418540 PEPE_0263 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803802.1 310889 D 278197 CDS YP_803803.1 116492068 4418541 310941..311606 1 NC_008525.1 hypothetical protein 311606 4418541 PEPE_0264 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803803.1 310941 D 278197 CDS YP_803804.1 116492069 4418542 311675..312523 1 NC_008525.1 hypothetical protein 312523 4418542 PEPE_0265 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803804.1 311675 D 278197 CDS YP_803805.1 116492070 4418543 312622..314643 1 NC_008525.1 methionyl-tRNA synthetase 314643 4418543 PEPE_0266 Pediococcus pentosaceus ATCC 25745 methionyl-tRNA synthetase YP_803805.1 312622 D 278197 CDS YP_803806.1 116492071 4418544 314719..315501 1 NC_008525.1 Mg-dependent DNase 315501 4418544 PEPE_0267 Pediococcus pentosaceus ATCC 25745 Mg-dependent DNase YP_803806.1 314719 D 278197 CDS YP_803807.1 116492072 4418545 315488..316048 1 NC_008525.1 ribonuclease M5 316048 4418545 PEPE_0268 Pediococcus pentosaceus ATCC 25745 ribonuclease M5 YP_803807.1 315488 D 278197 CDS YP_803808.1 116492073 4418546 316041..316934 1 NC_008525.1 dimethyladenosine transferase 316934 4418546 PEPE_0269 Pediococcus pentosaceus ATCC 25745 dimethyladenosine transferase YP_803808.1 316041 D 278197 CDS YP_803809.1 116492074 4418547 317061..317363 1 NC_008525.1 hypothetical protein 317363 4418547 PEPE_0270 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803809.1 317061 D 278197 CDS YP_803810.1 116492075 4418548 317481..318332 1 NC_008525.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 318332 ipk 4418548 ipk Pediococcus pentosaceus ATCC 25745 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_803810.1 317481 D 278197 CDS YP_803811.1 116492076 4418549 318342..318854 1 NC_008525.1 transcriptional regulator 318854 4418549 PEPE_0272 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_803811.1 318342 D 278197 CDS YP_803812.1 116492077 4418550 318963..319436 1 NC_008525.1 universal stress protein UspA-like nucleotide-binding protein 319436 4418550 PEPE_0273 Pediococcus pentosaceus ATCC 25745 universal stress protein UspA-like nucleotide-binding protein YP_803812.1 318963 D 278197 CDS YP_803813.1 116492078 4418551 319465..319914 1 NC_008525.1 universal stress protein UspA-like nucleotide-binding protein 319914 4418551 PEPE_0274 Pediococcus pentosaceus ATCC 25745 universal stress protein UspA-like nucleotide-binding protein YP_803813.1 319465 D 278197 CDS YP_803814.1 116492079 4418552 320054..321493 1 NC_008525.1 major facilitator superfamily permease 321493 4418552 PEPE_0275 Pediococcus pentosaceus ATCC 25745 major facilitator superfamily permease YP_803814.1 320054 D 278197 CDS YP_803815.1 116492080 4418553 complement(321556..322725) 1 NC_008525.1 1,3-propanediol dehydrogenase 322725 4418553 PEPE_0276 Pediococcus pentosaceus ATCC 25745 1,3-propanediol dehydrogenase YP_803815.1 321556 R 278197 CDS YP_803816.1 116492081 4418673 complement(322916..323674) 1 NC_008525.1 ABC-type uncharacterized transport system, ATPase component 323674 4418673 PEPE_0277 Pediococcus pentosaceus ATCC 25745 ABC-type uncharacterized transport system, ATPase component YP_803816.1 322916 R 278197 CDS YP_803817.1 116492082 4418674 complement(323676..324587) 1 NC_008525.1 ribose/xylose/arabinose/galactoside ABC-type transporter permease 324587 4418674 PEPE_0278 Pediococcus pentosaceus ATCC 25745 ribose/xylose/arabinose/galactoside ABC-type transporter permease YP_803817.1 323676 R 278197 CDS YP_803818.1 116492083 4418675 complement(324584..325579) 1 NC_008525.1 ABC-type uncharacterized transport system, periplasmic component 325579 4418675 PEPE_0279 Pediococcus pentosaceus ATCC 25745 ABC-type uncharacterized transport system, periplasmic component YP_803818.1 324584 R 278197 CDS YP_803819.1 116492084 4418676 complement(325915..326610) 1 NC_008525.1 GntR family transcriptional regulator 326610 4418676 PEPE_0280 Pediococcus pentosaceus ATCC 25745 GntR family transcriptional regulator YP_803819.1 325915 R 278197 CDS YP_803820.1 116492085 4418677 326777..327088 1 NC_008525.1 cellobiose-specific PTS system IIB component 327088 4418677 PEPE_0281 Pediococcus pentosaceus ATCC 25745 cellobiose-specific PTS system IIB component YP_803820.1 326777 D 278197 CDS YP_803821.1 116492086 4418678 327168..327491 1 NC_008525.1 cellobiose-specific PTS system IIA component 327491 4418678 PEPE_0282 Pediococcus pentosaceus ATCC 25745 cellobiose-specific PTS system IIA component YP_803821.1 327168 D 278197 CDS YP_803822.1 116492087 4418679 327507..328952 1 NC_008525.1 Beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase 328952 4418679 PEPE_0283 Pediococcus pentosaceus ATCC 25745 Beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase YP_803822.1 327507 D 278197 CDS YP_803823.1 116492088 4418680 328995..329750 1 NC_008525.1 transcriptional regulator 329750 4418680 PEPE_0284 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_803823.1 328995 D 278197 CDS YP_803824.1 116492089 4418681 329881..331221 1 NC_008525.1 NAD(FAD)-dependent dehydrogenase 331221 4418681 PEPE_0285 Pediococcus pentosaceus ATCC 25745 NAD(FAD)-dependent dehydrogenase YP_803824.1 329881 D 278197 CDS YP_803825.1 116492090 4418682 331253..332032 1 NC_008525.1 acetoin reductase 332032 4418682 PEPE_0286 Pediococcus pentosaceus ATCC 25745 acetoin reductase YP_803825.1 331253 D 278197 CDS YP_803826.1 116492091 4418683 complement(332076..332660) 1 NC_008525.1 uracil-DNA glycosylase 332660 4418683 PEPE_0287 Pediococcus pentosaceus ATCC 25745 uracil-DNA glycosylase YP_803826.1 332076 R 278197 CDS YP_803827.1 116492092 4418684 complement(332784..333956) 1 NC_008525.1 acetyltransferase 333956 4418684 PEPE_0288 Pediococcus pentosaceus ATCC 25745 acetyltransferase YP_803827.1 332784 R 278197 CDS YP_803828.1 116492093 4418685 334099..334986 1 NC_008525.1 ABC-type metal ion transport system, periplasmic component/surface adhesin 334986 4418685 PEPE_0289 Pediococcus pentosaceus ATCC 25745 ABC-type metal ion transport system, periplasmic component/surface adhesin YP_803828.1 334099 D 278197 CDS YP_803829.1 116492094 4418686 334986..335666 1 NC_008525.1 ABC-type Mn/Zn transport system, ATPase component 335666 4418686 PEPE_0290 Pediococcus pentosaceus ATCC 25745 ABC-type Mn/Zn transport system, ATPase component YP_803829.1 334986 D 278197 CDS YP_803830.1 116492095 4418687 335659..336447 1 NC_008525.1 ABC-type Mn2+/Zn2+ transport system, permease component 336447 4418687 PEPE_0291 Pediococcus pentosaceus ATCC 25745 ABC-type Mn2+/Zn2+ transport system, permease component YP_803830.1 335659 D 278197 CDS YP_803831.1 116492096 4418688 336603..337439 1 NC_008525.1 pur operon repressor 337439 4418688 PEPE_0292 Pediococcus pentosaceus ATCC 25745 pur operon repressor YP_803831.1 336603 D 278197 CDS YP_803832.1 116492097 4418689 337445..338848 1 NC_008525.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 338848 glmU 4418689 glmU Pediococcus pentosaceus ATCC 25745 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_803832.1 337445 D 278197 CDS YP_803833.1 116492098 4418690 complement(338953..339525) 1 NC_008525.1 Rossmann fold nucleotide-binding protein 339525 4418690 PEPE_0294 Pediococcus pentosaceus ATCC 25745 Rossmann fold nucleotide-binding protein YP_803833.1 338953 R 278197 CDS YP_803834.1 116492099 4418506 339882..340862 1 NC_008525.1 phosphoribosylpyrophosphate synthetase 340862 4418506 PEPE_0295 Pediococcus pentosaceus ATCC 25745 phosphoribosylpyrophosphate synthetase YP_803834.1 339882 D 278197 CDS YP_803835.1 116492100 4418507 341087..342148 1 NC_008525.1 hypothetical protein 342148 4418507 PEPE_0296 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803835.1 341087 D 278197 CDS YP_803836.1 116492101 4418508 complement(342914..343252) 1 NC_008525.1 hypothetical protein 343252 4418508 PEPE_0297 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803836.1 342914 R 278197 CDS YP_803837.1 116492102 4418509 complement(343324..343743) 1 NC_008525.1 hypothetical protein 343743 4418509 PEPE_0298 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803837.1 343324 R 278197 CDS YP_803838.1 116492103 4418510 343903..344553 1 NC_008525.1 glycerol uptake facilitator related permease (major Intrinsic protein family) 344553 4418510 PEPE_0299 Pediococcus pentosaceus ATCC 25745 glycerol uptake facilitator related permease (major Intrinsic protein family) YP_803838.1 343903 D 278197 CDS YP_803839.1 116492104 4418511 complement(344617..345369) 1 NC_008525.1 Kef-type K+ transporter NAD-binding component 345369 4418511 PEPE_0300 Pediococcus pentosaceus ATCC 25745 Kef-type K+ transporter NAD-binding component YP_803839.1 344617 R 278197 CDS YP_803840.1 116492105 4418512 345478..346449 1 NC_008525.1 asparaginase 346449 4418512 PEPE_0301 Pediococcus pentosaceus ATCC 25745 asparaginase YP_803840.1 345478 D 278197 CDS YP_803841.1 116492106 4418513 346504..348417 1 NC_008525.1 neutral endopeptidase 348417 4418513 PEPE_0302 Pediococcus pentosaceus ATCC 25745 neutral endopeptidase YP_803841.1 346504 D 278197 CDS YP_803842.1 116492107 4418514 348602..349909 1 NC_008525.1 xanthine/uracil/vitamin C permease 349909 4418514 PEPE_0303 Pediococcus pentosaceus ATCC 25745 xanthine/uracil/vitamin C permease YP_803842.1 348602 D 278197 CDS YP_803843.1 116492108 4418515 350024..350842 1 NC_008525.1 RNase HI 350842 4418515 PEPE_0304 Pediococcus pentosaceus ATCC 25745 RNase HI YP_803843.1 350024 D 278197 CDS YP_803844.1 116492109 4418516 complement(350829..351347) 1 NC_008525.1 hypothetical protein 351347 4418516 PEPE_0305 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803844.1 350829 R 278197 CDS YP_803845.1 116492110 4418517 complement(351460..351651) 1 NC_008525.1 hypothetical protein 351651 4418517 PEPE_0306 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803845.1 351460 R 278197 CDS YP_803846.1 116492111 4418518 complement(351754..352608) 1 NC_008525.1 transcriptional regulator 352608 4418518 PEPE_0307 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_803846.1 351754 R 278197 CDS YP_803847.1 116492112 4418519 352723..353748 1 NC_008525.1 hypothetical protein 353748 4418519 PEPE_0308 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803847.1 352723 D 278197 CDS YP_803848.1 116492113 4418520 complement(353808..354743) 1 NC_008525.1 AEC family permease 354743 4418520 PEPE_0309 Pediococcus pentosaceus ATCC 25745 AEC family permease YP_803848.1 353808 R 278197 CDS YP_803849.1 116492114 4418521 354837..355166 1 NC_008525.1 hypothetical protein 355166 4418521 PEPE_0310 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803849.1 354837 D 278197 CDS YP_803850.1 116492115 4418522 355183..356004 1 NC_008525.1 HAD superfamily hydrolase 356004 4418522 PEPE_0311 Pediococcus pentosaceus ATCC 25745 HAD superfamily hydrolase YP_803850.1 355183 D 278197 CDS YP_803851.1 116492116 4418489 357057..357983 1 NC_008525.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 357983 pyrB 4418489 pyrB Pediococcus pentosaceus ATCC 25745 aspartate carbamoyltransferase catalytic subunit YP_803851.1 357057 D 278197 CDS YP_803852.1 116492117 4418490 357983..359260 1 NC_008525.1 dihydroorotase 359260 4418490 PEPE_0314 Pediococcus pentosaceus ATCC 25745 dihydroorotase YP_803852.1 357983 D 278197 CDS YP_803853.1 116492118 4418491 359267..360352 1 NC_008525.1 carbamoyl-phosphate synthase small subunit 360352 4418491 PEPE_0315 Pediococcus pentosaceus ATCC 25745 carbamoyl-phosphate synthase small subunit YP_803853.1 359267 D 278197 CDS YP_803854.1 116492119 4418492 360355..363528 1 NC_008525.1 carbamoyl-phosphate synthase large subunit 363528 4418492 PEPE_0316 Pediococcus pentosaceus ATCC 25745 carbamoyl-phosphate synthase large subunit YP_803854.1 360355 D 278197 CDS YP_803855.1 116492120 4418493 363540..364454 1 NC_008525.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B 364454 4418493 PEPE_0317 Pediococcus pentosaceus ATCC 25745 dihydroorotate dehydrogenase 1B YP_803855.1 363540 D 278197 CDS YP_803856.1 116492121 4418494 364469..365857 1 NC_008525.1 succinate dehydrogenase/fumarate reductase, flavoprotein subunit 365857 4418494 PEPE_0318 Pediococcus pentosaceus ATCC 25745 succinate dehydrogenase/fumarate reductase, flavoprotein subunit YP_803856.1 364469 D 278197 CDS YP_803857.1 116492122 4418495 366029..367156 1 NC_008525.1 hypothetical protein 367156 4418495 PEPE_0319 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803857.1 366029 D 278197 CDS YP_803858.1 116492123 4418496 367170..368657 1 NC_008525.1 hypothetical protein 368657 4418496 PEPE_0320 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803858.1 367170 D 278197 CDS YP_803859.1 116492124 4418497 368650..370200 1 NC_008525.1 hypothetical protein 370200 4418497 PEPE_0321 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803859.1 368650 D 278197 CDS YP_803860.1 116492125 4418498 370222..371466 1 NC_008525.1 glycosyltransferase 371466 4418498 PEPE_0322 Pediococcus pentosaceus ATCC 25745 glycosyltransferase YP_803860.1 370222 D 278197 CDS YP_803861.1 116492126 4418499 371498..373531 1 NC_008525.1 glycosyl transferase 373531 4418499 PEPE_0323 Pediococcus pentosaceus ATCC 25745 glycosyl transferase YP_803861.1 371498 D 278197 CDS YP_803862.1 116492127 4418500 373515..374369 1 NC_008525.1 GGDEF domain-containing protein 374369 4418500 PEPE_0324 Pediococcus pentosaceus ATCC 25745 GGDEF domain-containing protein YP_803862.1 373515 D 278197 CDS YP_803863.1 116492128 4418501 complement(374427..374834) 1 NC_008525.1 hypothetical protein 374834 4418501 PEPE_0325 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803863.1 374427 R 278197 CDS YP_803864.1 116492129 4418502 375009..375389 1 NC_008525.1 lactoylglutathione lyase related lyase 375389 4418502 PEPE_0326 Pediococcus pentosaceus ATCC 25745 lactoylglutathione lyase related lyase YP_803864.1 375009 D 278197 CDS YP_803865.1 116492130 4418503 375538..376104 1 NC_008525.1 TetR family transcriptional regulator 376104 4418503 PEPE_0327 Pediococcus pentosaceus ATCC 25745 TetR family transcriptional regulator YP_803865.1 375538 D 278197 CDS YP_803866.1 116492131 4418504 376153..378810 1 NC_008525.1 hypothetical protein 378810 4418504 PEPE_0328 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803866.1 376153 D 278197 CDS YP_803867.1 116492132 4418505 378913..379536 1 NC_008525.1 putative NADH-flavin reductase 379536 4418505 PEPE_0329 Pediococcus pentosaceus ATCC 25745 putative NADH-flavin reductase YP_803867.1 378913 D 278197 CDS YP_803868.1 116492133 4418471 complement(379605..379835) 1 NC_008525.1 hypothetical protein 379835 4418471 PEPE_0330 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803868.1 379605 R 278197 CDS YP_803869.1 116492134 4418472 complement(379911..380651) 1 NC_008525.1 peptide ABC transporter ATPase 380651 4418472 PEPE_0331 Pediococcus pentosaceus ATCC 25745 peptide ABC transporter ATPase YP_803869.1 379911 R 278197 CDS YP_803870.1 116492135 4418473 complement(380672..381682) 1 NC_008525.1 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component 381682 4418473 PEPE_0332 Pediococcus pentosaceus ATCC 25745 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component YP_803870.1 380672 R 278197 CDS YP_803871.1 116492136 4418474 complement(381669..382451) 1 NC_008525.1 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 382451 4418474 PEPE_0333 Pediococcus pentosaceus ATCC 25745 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component YP_803871.1 381669 R 278197 CDS YP_803872.1 116492137 4418475 complement(382414..382710) 1 NC_008525.1 hypothetical protein 382710 4418475 PEPE_0334 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803872.1 382414 R 278197 CDS YP_803873.1 116492138 4418476 383043..383753 1 NC_008525.1 glucosamine-6-phosphate isomerase 383753 4418476 PEPE_0335 Pediococcus pentosaceus ATCC 25745 glucosamine-6-phosphate isomerase YP_803873.1 383043 D 278197 CDS YP_803874.1 116492139 4418477 384056..385255 1 NC_008525.1 acetate kinase 385255 4418477 PEPE_0336 Pediococcus pentosaceus ATCC 25745 acetate kinase YP_803874.1 384056 D 278197 CDS YP_803875.1 116492140 4418478 385259..386230 1 NC_008525.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 386230 eutD 4418478 eutD Pediococcus pentosaceus ATCC 25745 phosphotransacetylase YP_803875.1 385259 D 278197 CDS YP_803876.1 116492141 4418479 complement(386265..386705) 1 NC_008525.1 Fe2+/Zn2+ uptake regulation protein 386705 4418479 PEPE_0338 Pediococcus pentosaceus ATCC 25745 Fe2+/Zn2+ uptake regulation protein YP_803876.1 386265 R 278197 CDS YP_803877.1 116492142 4418480 386865..388286 1 NC_008525.1 major facilitator superfamily permease 388286 4418480 PEPE_0339 Pediococcus pentosaceus ATCC 25745 major facilitator superfamily permease YP_803877.1 386865 D 278197 CDS YP_803878.1 116492143 4418481 388300..389202 1 NC_008525.1 ribonuclease BN-like family protein 389202 4418481 PEPE_0340 Pediococcus pentosaceus ATCC 25745 ribonuclease BN-like family protein YP_803878.1 388300 D 278197 CDS YP_803879.1 116492144 4418482 complement(389244..389708) 1 NC_008525.1 hypothetical protein 389708 4418482 PEPE_0341 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803879.1 389244 R 278197 CDS YP_803880.1 116492145 4418483 complement(389784..390563) 1 NC_008525.1 protein tyrosine phosphatase 390563 4418483 PEPE_0342 Pediococcus pentosaceus ATCC 25745 protein tyrosine phosphatase YP_803880.1 389784 R 278197 CDS YP_803881.1 116492146 4418484 complement(390861..391652) 1 NC_008525.1 protein tyrosine phosphatase 391652 4418484 PEPE_0343 Pediococcus pentosaceus ATCC 25745 protein tyrosine phosphatase YP_803881.1 390861 R 278197 CDS YP_803882.1 116492147 4418485 complement(391667..392173) 1 NC_008525.1 has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; flavoprotein NrdI 392173 4418485 PEPE_0344 Pediococcus pentosaceus ATCC 25745 flavoprotein NrdI YP_803882.1 391667 R 278197 CDS YP_803883.1 116492148 4418486 392323..393123 1 NC_008525.1 HAD superfamily hydrolase 393123 4418486 PEPE_0345 Pediococcus pentosaceus ATCC 25745 HAD superfamily hydrolase YP_803883.1 392323 D 278197 CDS YP_803884.1 116492149 4418487 complement(393167..394552) 1 NC_008525.1 hemolysin-like protein 394552 4418487 PEPE_0346 Pediococcus pentosaceus ATCC 25745 hemolysin-like protein YP_803884.1 393167 R 278197 CDS YP_803885.1 116492150 4418453 394712..395650 1 NC_008525.1 oxidoreductase 395650 4418453 PEPE_0347 Pediococcus pentosaceus ATCC 25745 oxidoreductase YP_803885.1 394712 D 278197 CDS YP_803886.1 116492151 4418454 complement(395702..396331) 1 NC_008525.1 hypothetical protein 396331 4418454 PEPE_0348 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803886.1 395702 R 278197 CDS YP_803887.1 116492152 4418455 complement(396352..396684) 1 NC_008525.1 hypothetical protein 396684 4418455 PEPE_0349 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803887.1 396352 R 278197 CDS YP_803888.1 116492153 4418456 396830..397360 1 NC_008525.1 BS_ykrK family protein 397360 4418456 PEPE_0350 Pediococcus pentosaceus ATCC 25745 BS_ykrK family protein YP_803888.1 396830 D 278197 CDS YP_803889.1 116492154 4418457 complement(397405..397905) 1 NC_008525.1 hypothetical protein 397905 4418457 PEPE_0351 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803889.1 397405 R 278197 CDS YP_803890.1 116492155 4418458 398018..398740 1 NC_008525.1 GntR family transcriptional regulator 398740 4418458 PEPE_0352 Pediococcus pentosaceus ATCC 25745 GntR family transcriptional regulator YP_803890.1 398018 D 278197 CDS YP_803891.1 116492156 4418459 398927..401290 1 NC_008525.1 putative phosphoketolase 401290 4418459 PEPE_0353 Pediococcus pentosaceus ATCC 25745 putative phosphoketolase YP_803891.1 398927 D 278197 CDS YP_803892.1 116492157 4418460 complement(401348..402238) 1 NC_008525.1 pseudouridylate synthase, 23S RNA-specific 402238 4418460 PEPE_0354 Pediococcus pentosaceus ATCC 25745 pseudouridylate synthase, 23S RNA-specific YP_803892.1 401348 R 278197 CDS YP_803893.1 116492158 4418461 complement(402320..402772) 1 NC_008525.1 universal stress protein UspA-like nucleotide-binding protein 402772 4418461 PEPE_0355 Pediococcus pentosaceus ATCC 25745 universal stress protein UspA-like nucleotide-binding protein YP_803893.1 402320 R 278197 CDS YP_803894.1 116492159 4418462 complement(403003..403866) 1 NC_008525.1 3-hydroxyisobutyrate dehydrogenase 403866 4418462 PEPE_0356 Pediococcus pentosaceus ATCC 25745 3-hydroxyisobutyrate dehydrogenase YP_803894.1 403003 R 278197 CDS YP_803895.1 116492160 4418463 403998..404468 1 NC_008525.1 hypothetical protein 404468 4418463 PEPE_0357 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803895.1 403998 D 278197 CDS YP_803896.1 116492161 4418464 404483..405148 1 NC_008525.1 hypothetical protein 405148 4418464 PEPE_0358 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803896.1 404483 D 278197 CDS YP_803897.1 116492162 4418465 405135..405365 1 NC_008525.1 hypothetical protein 405365 4418465 PEPE_0359 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803897.1 405135 D 278197 CDS YP_803898.1 116492163 4418466 complement(405479..406120) 1 NC_008525.1 hypothetical protein 406120 4418466 PEPE_0360 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803898.1 405479 R 278197 CDS YP_803899.1 116492164 4418467 complement(406439..407290) 1 NC_008525.1 SAM-dependent methyltransferase 407290 4418467 PEPE_0361 Pediococcus pentosaceus ATCC 25745 SAM-dependent methyltransferase YP_803899.1 406439 R 278197 CDS YP_803900.1 116492165 4418468 complement(407290..407712) 1 NC_008525.1 XRE family transcriptional regulator 407712 4418468 PEPE_0362 Pediococcus pentosaceus ATCC 25745 XRE family transcriptional regulator YP_803900.1 407290 R 278197 CDS YP_803901.1 116492166 4418469 408015..408947 1 NC_008525.1 alpha/beta fold family hydrolase 408947 4418469 PEPE_0363 Pediococcus pentosaceus ATCC 25745 alpha/beta fold family hydrolase YP_803901.1 408015 D 278197 CDS YP_803902.1 116492167 4418470 complement(409013..410989) 1 NC_008525.1 NhaP-type Na+/H+ and K+/H+ antiporter 410989 4418470 PEPE_0364 Pediococcus pentosaceus ATCC 25745 NhaP-type Na+/H+ and K+/H+ antiporter YP_803902.1 409013 R 278197 CDS YP_803903.1 116492168 4418436 complement(411079..412038) 1 NC_008525.1 inosine-uridine nucleoside N-ribohydrolase 412038 4418436 PEPE_0365 Pediococcus pentosaceus ATCC 25745 inosine-uridine nucleoside N-ribohydrolase YP_803903.1 411079 R 278197 CDS YP_803904.1 116492169 4418437 412199..413185 1 NC_008525.1 thioredoxin reductase 413185 4418437 PEPE_0366 Pediococcus pentosaceus ATCC 25745 thioredoxin reductase YP_803904.1 412199 D 278197 CDS YP_803905.1 116492170 4418438 complement(413239..415395) 1 NC_008525.1 phosphoglycerol transferase/alkaline phosphatase superfamily protein 415395 4418438 PEPE_0367 Pediococcus pentosaceus ATCC 25745 phosphoglycerol transferase/alkaline phosphatase superfamily protein YP_803905.1 413239 R 278197 CDS YP_803906.1 116492171 4418439 415601..416032 1 NC_008525.1 acetyltransferase 416032 4418439 PEPE_0368 Pediococcus pentosaceus ATCC 25745 acetyltransferase YP_803906.1 415601 D 278197 CDS YP_803907.1 116492172 4418440 416032..417138 1 NC_008525.1 multitransmembrane protein 417138 4418440 PEPE_0369 Pediococcus pentosaceus ATCC 25745 multitransmembrane protein YP_803907.1 416032 D 278197 CDS YP_803908.1 116492173 4418441 417131..417892 1 NC_008525.1 multitransmembrane protein 417892 4418441 PEPE_0370 Pediococcus pentosaceus ATCC 25745 multitransmembrane protein YP_803908.1 417131 D 278197 CDS YP_803909.1 116492174 4418442 complement(417950..418888) 1 NC_008525.1 Mg2+ and Co2+ transporter 418888 4418442 PEPE_0371 Pediococcus pentosaceus ATCC 25745 Mg2+ and Co2+ transporter YP_803909.1 417950 R 278197 CDS YP_803910.1 116492175 4418443 419000..419737 1 NC_008525.1 hypothetical protein 419737 4418443 PEPE_0372 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803910.1 419000 D 278197 CDS YP_803911.1 116492176 4418444 419777..420106 1 NC_008525.1 Thiol-disulfide isomerase and thioredoxin 420106 4418444 PEPE_0373 Pediococcus pentosaceus ATCC 25745 Thiol-disulfide isomerase and thioredoxin YP_803911.1 419777 D 278197 CDS YP_803912.1 116492177 4418445 420093..420953 1 NC_008525.1 hypothetical protein 420953 4418445 PEPE_0374 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803912.1 420093 D 278197 CDS YP_803913.1 116492178 4418446 420992..421774 1 NC_008525.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 421774 4418446 PEPE_0375 Pediococcus pentosaceus ATCC 25745 methionine aminopeptidase YP_803913.1 420992 D 278197 CDS YP_803914.1 116492179 4418447 complement(421858..422232) 1 NC_008525.1 lactoylglutathione lyase related lyase 422232 4418447 PEPE_0376 Pediococcus pentosaceus ATCC 25745 lactoylglutathione lyase related lyase YP_803914.1 421858 R 278197 CDS YP_803915.1 116492180 4418448 422351..423901 1 NC_008525.1 ABC transporter ATPase 423901 4418448 PEPE_0377 Pediococcus pentosaceus ATCC 25745 ABC transporter ATPase YP_803915.1 422351 D 278197 CDS YP_803916.1 116492181 4418449 complement(423951..424802) 1 NC_008525.1 aldo/keto reductase 424802 4418449 PEPE_0378 Pediococcus pentosaceus ATCC 25745 aldo/keto reductase YP_803916.1 423951 R 278197 CDS YP_803917.1 116492182 4418450 complement(424922..425836) 1 NC_008525.1 prolyl aminopeptidase 425836 4418450 PEPE_0379 Pediococcus pentosaceus ATCC 25745 prolyl aminopeptidase YP_803917.1 424922 R 278197 CDS YP_803918.1 116492183 4418451 complement(425950..428388) 1 NC_008525.1 catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue; x-prolyl-dipeptidyl aminopeptidase 428388 4418451 PEPE_0380 Pediococcus pentosaceus ATCC 25745 x-prolyl-dipeptidyl aminopeptidase YP_803918.1 425950 R 278197 CDS YP_803919.1 116492184 4418452 428628..429974 1 NC_008525.1 xanthine/uracil/vitamin C permease 429974 4418452 PEPE_0381 Pediococcus pentosaceus ATCC 25745 xanthine/uracil/vitamin C permease YP_803919.1 428628 D 278197 CDS YP_803920.1 116492185 4418418 complement(430034..431422) 1 NC_008525.1 amino acid transporter 431422 4418418 PEPE_0382 Pediococcus pentosaceus ATCC 25745 amino acid transporter YP_803920.1 430034 R 278197 CDS YP_803921.1 116492186 4418419 431572..431994 1 NC_008525.1 NUDIX family hydrolase 431994 4418419 PEPE_0383 Pediococcus pentosaceus ATCC 25745 NUDIX family hydrolase YP_803921.1 431572 D 278197 CDS YP_803922.1 116492187 4418420 complement(432097..432273) 1 NC_008525.1 hypothetical protein 432273 4418420 PEPE_0384 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803922.1 432097 R 278197 CDS YP_803923.1 116492188 4418421 432400..432981 1 NC_008525.1 guanylate kinase 432981 4418421 PEPE_0385 Pediococcus pentosaceus ATCC 25745 guanylate kinase YP_803923.1 432400 D 278197 CDS YP_803924.1 116492189 4418422 433029..433478 1 NC_008525.1 Fe2+/Zn2+ uptake regulation protein 433478 4418422 PEPE_0386 Pediococcus pentosaceus ATCC 25745 Fe2+/Zn2+ uptake regulation protein YP_803924.1 433029 D 278197 CDS YP_803925.1 116492190 4418423 433573..434079 1 NC_008525.1 hypothetical protein 434079 4418423 PEPE_0387 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803925.1 433573 D 278197 CDS YP_803926.1 116492191 4418424 434091..434945 1 NC_008525.1 hypothetical protein 434945 4418424 PEPE_0388 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803926.1 434091 D 278197 CDS YP_803927.1 116492192 4418425 435098..435838 1 NC_008525.1 ABC-type polar amino acid transport system, ATPase component 435838 4418425 PEPE_0389 Pediococcus pentosaceus ATCC 25745 ABC-type polar amino acid transport system, ATPase component YP_803927.1 435098 D 278197 CDS YP_803928.1 116492193 4418426 435850..436686 1 NC_008525.1 amino acid ABC transporter periplasmic protein 436686 4418426 PEPE_0390 Pediococcus pentosaceus ATCC 25745 amino acid ABC transporter periplasmic protein YP_803928.1 435850 D 278197 CDS YP_803929.1 116492194 4418427 436683..437333 1 NC_008525.1 ABC-type amino acid transport system, permease component 437333 4418427 PEPE_0391 Pediococcus pentosaceus ATCC 25745 ABC-type amino acid transport system, permease component YP_803929.1 436683 D 278197 CDS YP_803930.1 116492195 4418428 437333..437989 1 NC_008525.1 ABC-type amino acid transport system, permease component 437989 4418428 PEPE_0392 Pediococcus pentosaceus ATCC 25745 ABC-type amino acid transport system, permease component YP_803930.1 437333 D 278197 CDS YP_803931.1 116492196 4418429 complement(438053..438610) 1 NC_008525.1 acetyltransferase 438610 4418429 PEPE_0393 Pediococcus pentosaceus ATCC 25745 acetyltransferase YP_803931.1 438053 R 278197 CDS YP_803932.1 116492197 4418430 complement(438636..439349) 1 NC_008525.1 transcriptional regulator 439349 4418430 PEPE_0394 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_803932.1 438636 R 278197 CDS YP_803933.1 116492198 4418431 complement(439450..440712) 1 NC_008525.1 GTPase 440712 4418431 PEPE_0395 Pediococcus pentosaceus ATCC 25745 GTPase YP_803933.1 439450 R 278197 CDS YP_803934.1 116492199 4418432 440927..442549 1 NC_008525.1 ABC-type oligopeptide transport system, periplasmic component 442549 4418432 PEPE_0396 Pediococcus pentosaceus ATCC 25745 ABC-type oligopeptide transport system, periplasmic component YP_803934.1 440927 D 278197 CDS YP_803935.1 116492200 4418433 442639..443568 1 NC_008525.1 ABC-type dipeptide/oligopeptide/nickel transport system, permease component 443568 4418433 PEPE_0397 Pediococcus pentosaceus ATCC 25745 ABC-type dipeptide/oligopeptide/nickel transport system, permease component YP_803935.1 442639 D 278197 CDS YP_803936.1 116492201 4418434 443573..444598 1 NC_008525.1 ABC-type dipeptide/oligopeptide/nickel transport system, permease component 444598 4418434 PEPE_0398 Pediococcus pentosaceus ATCC 25745 ABC-type dipeptide/oligopeptide/nickel transport system, permease component YP_803936.1 443573 D 278197 CDS YP_803937.1 116492202 4418435 444613..445686 1 NC_008525.1 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 445686 4418435 PEPE_0399 Pediococcus pentosaceus ATCC 25745 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component YP_803937.1 444613 D 278197 CDS YP_803938.1 116492203 4418401 445699..446646 1 NC_008525.1 ABC-type oligopeptide transport system, ATPase component 446646 4418401 PEPE_0400 Pediococcus pentosaceus ATCC 25745 ABC-type oligopeptide transport system, ATPase component YP_803938.1 445699 D 278197 CDS YP_803939.1 116492204 4418402 complement(446688..447356) 1 NC_008525.1 fructose-2,6-bisphosphatase 447356 4418402 PEPE_0401 Pediococcus pentosaceus ATCC 25745 fructose-2,6-bisphosphatase YP_803939.1 446688 R 278197 CDS YP_803940.1 116492205 4418403 complement(447364..448995) 1 NC_008525.1 amino acid transporter 448995 4418403 PEPE_0402 Pediococcus pentosaceus ATCC 25745 amino acid transporter YP_803940.1 447364 R 278197 CDS YP_803941.1 116492206 4418404 complement(449020..449688) 1 NC_008525.1 fructose-2,6-bisphosphatase 449688 4418404 PEPE_0403 Pediococcus pentosaceus ATCC 25745 fructose-2,6-bisphosphatase YP_803941.1 449020 R 278197 CDS YP_803942.1 116492207 4418405 449829..452126 1 NC_008525.1 superfamily I DNA/RNA helicase 452126 4418405 PEPE_0404 Pediococcus pentosaceus ATCC 25745 superfamily I DNA/RNA helicase YP_803942.1 449829 D 278197 CDS YP_803943.1 116492208 4418406 452245..453921 1 NC_008525.1 catalyzes the formation of 2-acetolactate from pyruvate in stationary phase; acetolactate synthase 453921 4418406 PEPE_0405 Pediococcus pentosaceus ATCC 25745 acetolactate synthase YP_803943.1 452245 D 278197 CDS YP_803944.1 116492209 4418407 453933..454637 1 NC_008525.1 Alpha-acetolactate decarboxylase 454637 4418407 PEPE_0406 Pediococcus pentosaceus ATCC 25745 Alpha-acetolactate decarboxylase YP_803944.1 453933 D 278197 CDS YP_803945.1 116492210 4418408 454691..455608 1 NC_008525.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 455608 4418408 PEPE_0407 Pediococcus pentosaceus ATCC 25745 pantothenate kinase YP_803945.1 454691 D 278197 CDS YP_803946.1 116492211 4418409 complement(455664..456347) 1 NC_008525.1 Crp-like transcriptional regulator 456347 4418409 PEPE_0408 Pediococcus pentosaceus ATCC 25745 Crp-like transcriptional regulator YP_803946.1 455664 R 278197 CDS YP_803947.1 116492212 4418410 456477..456707 1 NC_008525.1 copper chaperone 456707 4418410 PEPE_0409 Pediococcus pentosaceus ATCC 25745 copper chaperone YP_803947.1 456477 D 278197 CDS YP_803948.1 116492213 4418411 456707..457261 1 NC_008525.1 DNA-binding ferritin-like protein (oxidative damage protectant) 457261 4418411 PEPE_0410 Pediococcus pentosaceus ATCC 25745 DNA-binding ferritin-like protein (oxidative damage protectant) YP_803948.1 456707 D 278197 CDS YP_803949.1 116492214 4418412 457264..459120 1 NC_008525.1 cation transport ATPase 459120 4418412 PEPE_0411 Pediococcus pentosaceus ATCC 25745 cation transport ATPase YP_803949.1 457264 D 278197 CDS YP_803950.1 116492215 4418413 459253..460806 1 NC_008525.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 460806 guaA 4418413 guaA Pediococcus pentosaceus ATCC 25745 GMP synthase YP_803950.1 459253 D 278197 CDS YP_803951.1 116492216 4418414 complement(461396..461788) 1 NC_008525.1 hypothetical protein 461788 4418414 PEPE_0413 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803951.1 461396 R 278197 CDS YP_803952.1 116492217 4418415 461951..462265 1 NC_008525.1 XRE family transcriptional regulator 462265 4418415 PEPE_0414 Pediococcus pentosaceus ATCC 25745 XRE family transcriptional regulator YP_803952.1 461951 D 278197 CDS YP_803953.1 116492218 4418416 462874..463530 1 NC_008525.1 hypothetical protein 463530 4418416 PEPE_0415 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803953.1 462874 D 278197 CDS YP_803954.1 116492219 4418417 463663..465063 1 NC_008525.1 major facilitator superfamily permease 465063 4418417 PEPE_0416 Pediococcus pentosaceus ATCC 25745 major facilitator superfamily permease YP_803954.1 463663 D 278197 CDS YP_803955.1 116492220 4418383 465112..467646 1 NC_008525.1 lysyl aminopeptidase 467646 4418383 PEPE_0417 Pediococcus pentosaceus ATCC 25745 lysyl aminopeptidase YP_803955.1 465112 D 278197 CDS YP_803956.1 116492221 4418384 complement(467695..468321) 1 NC_008525.1 hypothetical protein 468321 4418384 PEPE_0418 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803956.1 467695 R 278197 CDS YP_803957.1 116492222 4418385 complement(468641..469291) 1 NC_008525.1 metal-dependent membrane protease 469291 4418385 PEPE_0419 Pediococcus pentosaceus ATCC 25745 metal-dependent membrane protease YP_803957.1 468641 R 278197 CDS YP_803958.1 116492223 4418386 469476..469760 1 NC_008525.1 Co-chaperonin GroES (HSP10) 469760 4418386 PEPE_0420 Pediococcus pentosaceus ATCC 25745 Co-chaperonin GroES (HSP10) YP_803958.1 469476 D 278197 CDS YP_803959.1 116492224 4418387 469788..471407 1 NC_008525.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 471407 groEL 4418387 groEL Pediococcus pentosaceus ATCC 25745 chaperonin GroEL YP_803959.1 469788 D 278197 CDS YP_803960.1 116492225 4418388 471751..473583 1 NC_008525.1 amino acid transporter 473583 4418388 PEPE_0422 Pediococcus pentosaceus ATCC 25745 amino acid transporter YP_803960.1 471751 D 278197 CDS YP_803961.1 116492226 4418389 473734..474894 1 NC_008525.1 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 474894 4418389 PEPE_0423 Pediococcus pentosaceus ATCC 25745 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase YP_803961.1 473734 D 278197 CDS YP_803962.1 116492227 4418390 complement(474909..475562) 1 NC_008525.1 hypothetical protein 475562 4418390 PEPE_0424 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803962.1 474909 R 278197 CDS YP_803963.1 116492228 4418391 475595..476914 1 NC_008525.1 superfamily II DNA/RNA helicase 476914 4418391 PEPE_0425 Pediococcus pentosaceus ATCC 25745 superfamily II DNA/RNA helicase YP_803963.1 475595 D 278197 CDS YP_803964.1 116492229 4418392 477154..477585 1 NC_008525.1 amidophosphoribosyltransferase 477585 4418392 PEPE_0426 Pediococcus pentosaceus ATCC 25745 amidophosphoribosyltransferase YP_803964.1 477154 D 278197 CDS YP_803965.1 116492230 4418393 477716..478270 1 NC_008525.1 SSU ribosomal protein S30P / sigma 54 modulation protein 478270 4418393 PEPE_0427 Pediococcus pentosaceus ATCC 25745 SSU ribosomal protein S30P / sigma 54 modulation protein YP_803965.1 477716 D 278197 CDS YP_803966.1 116492231 4418394 478431..480791 1 NC_008525.1 protein translocase subunit secA 480791 4418394 PEPE_0428 Pediococcus pentosaceus ATCC 25745 protein translocase subunit secA YP_803966.1 478431 D 278197 CDS YP_803967.1 116492232 4418395 480873..480947 1 NC_008525.1 hypothetical protein 480947 4418395 PEPE_0429 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803967.1 480873 D 278197 CDS YP_803968.1 116492233 4418396 480958..481989 1 NC_008525.1 peptide chain release factor 2 481989 4418396 PEPE_0430 Pediococcus pentosaceus ATCC 25745 peptide chain release factor 2 YP_803968.1 480958 D 278197 CDS YP_803969.1 116492234 4418397 482000..482704 1 NC_008525.1 DNA-binding response regulator 482704 4418397 PEPE_0431 Pediococcus pentosaceus ATCC 25745 DNA-binding response regulator YP_803969.1 482000 D 278197 CDS YP_803970.1 116492235 4418398 482676..484061 1 NC_008525.1 Signal transduction histidine kinase 484061 4418398 PEPE_0432 Pediococcus pentosaceus ATCC 25745 Signal transduction histidine kinase YP_803970.1 482676 D 278197 CDS YP_803971.1 116492236 4418399 484224..485105 1 NC_008525.1 ABC-type phosphate transport system, periplasmic component 485105 4418399 PEPE_0433 Pediococcus pentosaceus ATCC 25745 ABC-type phosphate transport system, periplasmic component YP_803971.1 484224 D 278197 CDS YP_803972.1 116492237 4418400 485105..486013 1 NC_008525.1 ABC-type phosphate transport system, permease component 486013 4418400 PEPE_0434 Pediococcus pentosaceus ATCC 25745 ABC-type phosphate transport system, permease component YP_803972.1 485105 D 278197 CDS YP_803973.1 116492238 4418366 486014..486901 1 NC_008525.1 ABC-type phosphate transport system, permease component 486901 4418366 PEPE_0435 Pediococcus pentosaceus ATCC 25745 ABC-type phosphate transport system, permease component YP_803973.1 486014 D 278197 CDS YP_803974.1 116492239 4418367 486919..487719 1 NC_008525.1 ABC-type phosphate transport system, ATPase component 487719 4418367 PEPE_0436 Pediococcus pentosaceus ATCC 25745 ABC-type phosphate transport system, ATPase component YP_803974.1 486919 D 278197 CDS YP_803975.1 116492240 4418368 487733..488491 1 NC_008525.1 ABC-type phosphate transport system, ATPase component 488491 4418368 PEPE_0437 Pediococcus pentosaceus ATCC 25745 ABC-type phosphate transport system, ATPase component YP_803975.1 487733 D 278197 CDS YP_803976.1 116492241 4418369 488503..489186 1 NC_008525.1 phosphate uptake regulator, PhoU 489186 4418369 PEPE_0438 Pediococcus pentosaceus ATCC 25745 phosphate uptake regulator, PhoU YP_803976.1 488503 D 278197 CDS YP_803977.1 116492242 4418370 489324..489638 1 NC_008525.1 putative stress-responsive transcriptional regulator 489638 4418370 PEPE_0439 Pediococcus pentosaceus ATCC 25745 putative stress-responsive transcriptional regulator YP_803977.1 489324 D 278197 CDS YP_803978.1 116492243 4418371 489655..490011 1 NC_008525.1 hypothetical protein 490011 4418371 PEPE_0440 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803978.1 489655 D 278197 CDS YP_803979.1 116492244 4418372 490029..490967 1 NC_008525.1 Serine kinase of the HPr protein, regulates carbohydrate metabolism 490967 4418372 PEPE_0441 Pediococcus pentosaceus ATCC 25745 Serine kinase of the HPr protein, regulates carbohydrate metabolism YP_803979.1 490029 D 278197 CDS YP_803980.1 116492245 4418373 490979..491815 1 NC_008525.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 491815 4418373 PEPE_0442 Pediococcus pentosaceus ATCC 25745 prolipoprotein diacylglyceryl transferase YP_803980.1 490979 D 278197 CDS YP_803981.1 116492246 4418374 491897..492913 1 NC_008525.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 492913 gpsA 4418374 gpsA Pediococcus pentosaceus ATCC 25745 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_803981.1 491897 D 278197 CDS YP_803982.1 116492247 4418375 492937..493818 1 NC_008525.1 UDP-glucose pyrophosphorylase 493818 4418375 PEPE_0444 Pediococcus pentosaceus ATCC 25745 UDP-glucose pyrophosphorylase YP_803982.1 492937 D 278197 CDS YP_803983.1 116492248 4418376 493949..494875 1 NC_008525.1 thioredoxin reductase 494875 4418376 PEPE_0445 Pediococcus pentosaceus ATCC 25745 thioredoxin reductase YP_803983.1 493949 D 278197 CDS YP_803984.1 116492249 4418377 495032..496756 1 NC_008525.1 alpha-phosphoglucomutase 496756 4418377 PEPE_0446 Pediococcus pentosaceus ATCC 25745 alpha-phosphoglucomutase YP_803984.1 495032 D 278197 CDS YP_803985.1 116492250 4418378 496912..497541 1 NC_008525.1 HD superfamily hydrolase 497541 4418378 PEPE_0447 Pediococcus pentosaceus ATCC 25745 HD superfamily hydrolase YP_803985.1 496912 D 278197 CDS YP_803986.1 116492251 4418379 497678..499681 1 NC_008525.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 499681 4418379 PEPE_0448 Pediococcus pentosaceus ATCC 25745 excinuclease ABC subunit B YP_803986.1 497678 D 278197 CDS YP_803987.1 116492252 4418380 499694..502537 1 NC_008525.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 502537 uvrA 4418380 uvrA Pediococcus pentosaceus ATCC 25745 excinuclease ABC subunit A YP_803987.1 499694 D 278197 CDS YP_803988.1 116492253 4418381 502636..503523 1 NC_008525.1 hypothetical protein 503523 4418381 PEPE_0450 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803988.1 502636 D 278197 CDS YP_803989.1 116492254 4418382 503520..504521 1 NC_008525.1 hypothetical protein 504521 4418382 PEPE_0451 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803989.1 503520 D 278197 CDS YP_803990.1 116492255 4418349 504534..505463 1 NC_008525.1 hypothetical protein 505463 4418349 PEPE_0452 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803990.1 504534 D 278197 CDS YP_803991.1 116492256 4418350 505640..508219 1 NC_008525.1 N-acetylmuramidase 508219 4418350 PEPE_0453 Pediococcus pentosaceus ATCC 25745 N-acetylmuramidase YP_803991.1 505640 D 278197 CDS YP_803992.1 116492257 4418351 508304..508576 1 NC_008525.1 hypothetical protein 508576 4418351 PEPE_0454 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_803992.1 508304 D 278197 CDS YP_803993.1 116492258 4418352 complement(508621..509214) 1 NC_008525.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 509214 clpP 4418352 clpP Pediococcus pentosaceus ATCC 25745 ATP-dependent Clp protease proteolytic subunit YP_803993.1 508621 R 278197 CDS YP_803994.1 116492259 4418354 509598..510914 1 NC_008525.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 510914 4418354 PEPE_0457 Pediococcus pentosaceus ATCC 25745 RNA polymerase factor sigma-54 YP_803994.1 509598 D 278197 CDS YP_803995.1 116492260 4418355 511098..512129 1 NC_008525.1 central glycolytic genes regulator 512129 4418355 PEPE_0458 Pediococcus pentosaceus ATCC 25745 central glycolytic genes regulator YP_803995.1 511098 D 278197 CDS YP_803996.1 116492261 4418356 512197..513219 1 NC_008525.1 glyceraldehyde-3-phosphate dehydrogenase 513219 4418356 PEPE_0459 Pediococcus pentosaceus ATCC 25745 glyceraldehyde-3-phosphate dehydrogenase YP_803996.1 512197 D 278197 CDS YP_803997.1 116492262 4418357 513342..514544 1 NC_008525.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 514544 pgk 4418357 pgk Pediococcus pentosaceus ATCC 25745 phosphoglycerate kinase YP_803997.1 513342 D 278197 CDS YP_803998.1 116492263 4418358 514624..515379 1 NC_008525.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 515379 tpiA 4418358 tpiA Pediococcus pentosaceus ATCC 25745 triosephosphate isomerase YP_803998.1 514624 D 278197 CDS YP_803999.1 116492264 4418359 515455..516777 1 NC_008525.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 516777 eno 4418359 eno Pediococcus pentosaceus ATCC 25745 phosphopyruvate hydratase YP_803999.1 515455 D 278197 CDS YP_804000.1 116492265 4418360 516904..517140 1 NC_008525.1 preprotein translocase subunit SecG 517140 4418360 PEPE_0463 Pediococcus pentosaceus ATCC 25745 preprotein translocase subunit SecG YP_804000.1 516904 D 278197 CDS YP_804001.1 116492266 4418361 517279..519624 1 NC_008525.1 exoribonuclease R 519624 4418361 PEPE_0464 Pediococcus pentosaceus ATCC 25745 exoribonuclease R YP_804001.1 517279 D 278197 CDS YP_804002.1 116492267 4418362 519639..520106 1 NC_008525.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 520106 smpB 4418362 smpB Pediococcus pentosaceus ATCC 25745 SsrA-binding protein YP_804002.1 519639 D 278197 CDS YP_804003.1 116492268 4418363 complement(520141..520704) 1 NC_008525.1 acetyltransferase 520704 4418363 PEPE_0466 Pediococcus pentosaceus ATCC 25745 acetyltransferase YP_804003.1 520141 R 278197 CDS YP_804004.1 116492269 4418364 complement(520658..521260) 1 NC_008525.1 hypothetical protein 521260 4418364 PEPE_0467 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804004.1 520658 R 278197 CDS YP_804005.1 116492270 4418365 complement(521275..522147) 1 NC_008525.1 HAD superfamily hydrolase 522147 4418365 PEPE_0468 Pediococcus pentosaceus ATCC 25745 HAD superfamily hydrolase YP_804005.1 521275 R 278197 CDS YP_804006.1 116492271 4418332 522258..522950 1 NC_008525.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 522950 4418332 PEPE_0469 Pediococcus pentosaceus ATCC 25745 uracil-DNA glycosylase YP_804006.1 522258 D 278197 CDS YP_804007.1 116492272 4418333 522953..523426 1 NC_008525.1 ATPase or kinase 523426 4418333 PEPE_0470 Pediococcus pentosaceus ATCC 25745 ATPase or kinase YP_804007.1 522953 D 278197 CDS YP_804008.1 116492273 4418334 523416..523913 1 NC_008525.1 acetyltransferase 523913 4418334 PEPE_0471 Pediococcus pentosaceus ATCC 25745 acetyltransferase YP_804008.1 523416 D 278197 CDS YP_804009.1 116492274 4418335 complement(523906..524442) 1 NC_008525.1 DNA polymerase III, epsilon subunit related 3'-5' exonuclease 524442 4418335 PEPE_0472 Pediococcus pentosaceus ATCC 25745 DNA polymerase III, epsilon subunit related 3'-5' exonuclease YP_804009.1 523906 R 278197 CDS YP_804010.1 116492275 4418336 524517..525434 1 NC_008525.1 dehydrogenase related protein 525434 4418336 PEPE_0473 Pediococcus pentosaceus ATCC 25745 dehydrogenase related protein YP_804010.1 524517 D 278197 CDS YP_804011.1 116492276 4418337 525479..526381 1 NC_008525.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 526381 murB 4418337 murB Pediococcus pentosaceus ATCC 25745 UDP-N-acetylenolpyruvoylglucosamine reductase YP_804011.1 525479 D 278197 CDS YP_804012.1 116492277 4418338 526512..527363 1 NC_008525.1 hypothetical protein 527363 4418338 PEPE_0475 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804012.1 526512 D 278197 CDS YP_804013.1 116492278 4418339 527364..528293 1 NC_008525.1 hypothetical protein 528293 4418339 PEPE_0476 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804013.1 527364 D 278197 CDS YP_804014.1 116492279 4418340 528312..529670 1 NC_008525.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 529670 glmM 4418340 glmM Pediococcus pentosaceus ATCC 25745 phosphoglucosamine mutase YP_804014.1 528312 D 278197 CDS YP_804015.1 116492280 4418341 529906..531723 1 NC_008525.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 531723 4418341 PEPE_0478 Pediococcus pentosaceus ATCC 25745 glucosamine--fructose-6-phosphate aminotransferase YP_804015.1 529906 D 278197 CDS YP_804016.1 116492281 4418342 531992..532303 1 NC_008525.1 hypothetical protein 532303 4418342 PEPE_0479 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804016.1 531992 D 278197 CDS YP_804017.1 116492282 4418344 complement(534223..534759) 1 NC_008525.1 hypothetical protein 534759 4418344 PEPE_0481 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804017.1 534223 R 278197 CDS YP_804018.1 116492283 4418345 534905..535588 1 NC_008525.1 HAD superfamily hydrolase 535588 4418345 PEPE_0482 Pediococcus pentosaceus ATCC 25745 HAD superfamily hydrolase YP_804018.1 534905 D 278197 CDS YP_804019.1 116492284 4418346 535917..537203 1 NC_008525.1 manganese transporter NRAMP 537203 4418346 PEPE_0483 Pediococcus pentosaceus ATCC 25745 manganese transporter NRAMP YP_804019.1 535917 D 278197 CDS YP_804020.1 116492285 4418347 537223..539394 1 NC_008525.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 539394 4418347 PEPE_0484 Pediococcus pentosaceus ATCC 25745 anaerobic ribonucleoside triphosphate reductase YP_804020.1 537223 D 278197 CDS YP_804021.1 116492286 4418348 539387..539974 1 NC_008525.1 ribonucleoside-triphosphate reductase class III activase subunit 539974 4418348 PEPE_0485 Pediococcus pentosaceus ATCC 25745 ribonucleoside-triphosphate reductase class III activase subunit YP_804021.1 539387 D 278197 CDS YP_804022.1 116492287 4418314 539991..540752 1 NC_008525.1 Fe-S cluster assembly ABC-type transport system, ATPase component 540752 4418314 PEPE_0486 Pediococcus pentosaceus ATCC 25745 Fe-S cluster assembly ABC-type transport system, ATPase component YP_804022.1 539991 D 278197 CDS YP_804023.1 116492288 4418315 540790..541818 1 NC_008525.1 Fe-S cluster assembly ABC-type transport system, permease component 541818 4418315 PEPE_0487 Pediococcus pentosaceus ATCC 25745 Fe-S cluster assembly ABC-type transport system, permease component YP_804023.1 540790 D 278197 CDS YP_804024.1 116492289 4418316 541831..543006 1 NC_008525.1 cysteine sulfinate desulfinase/cysteine desulfurase 543006 4418316 PEPE_0488 Pediococcus pentosaceus ATCC 25745 cysteine sulfinate desulfinase/cysteine desulfurase YP_804024.1 541831 D 278197 CDS YP_804025.1 116492290 4418317 543003..543443 1 NC_008525.1 Fe-S cluster formation protein, NifU-like 543443 4418317 PEPE_0489 Pediococcus pentosaceus ATCC 25745 Fe-S cluster formation protein, NifU-like YP_804025.1 543003 D 278197 CDS YP_804026.1 116492291 4418318 543433..544842 1 NC_008525.1 Fe-S cluster assembly ABC-type transport system, permease component 544842 4418318 PEPE_0490 Pediococcus pentosaceus ATCC 25745 Fe-S cluster assembly ABC-type transport system, permease component YP_804026.1 543433 D 278197 CDS YP_804027.1 116492292 4418319 544998..545534 1 NC_008525.1 phenolic acid decarboxylase 545534 4418319 PEPE_0491 Pediococcus pentosaceus ATCC 25745 phenolic acid decarboxylase YP_804027.1 544998 D 278197 CDS YP_804028.1 116492293 4418320 545561..546091 1 NC_008525.1 PadR family transcriptional regulator 546091 4418320 PEPE_0492 Pediococcus pentosaceus ATCC 25745 PadR family transcriptional regulator YP_804028.1 545561 D 278197 CDS YP_804029.1 116492294 4418321 546319..546636 1 NC_008525.1 hypothetical protein 546636 4418321 PEPE_0493 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804029.1 546319 D 278197 CDS YP_804030.1 116492295 4418323 complement(547219..549540) 1 NC_008525.1 amino acid transporter 549540 4418323 PEPE_0495 Pediococcus pentosaceus ATCC 25745 amino acid transporter YP_804030.1 547219 R 278197 CDS YP_804031.1 116492296 4418324 complement(549706..550824) 1 NC_008525.1 methionine synthase II (cobalamin-independent) 550824 4418324 PEPE_0496 Pediococcus pentosaceus ATCC 25745 methionine synthase II (cobalamin-independent) YP_804031.1 549706 R 278197 CDS YP_804032.1 116492297 4418325 551558..552118 1 NC_008525.1 site-specific recombinase, DNA invertase Pin related proteins 552118 4418325 PEPE_0497 Pediococcus pentosaceus ATCC 25745 site-specific recombinase, DNA invertase Pin related proteins YP_804032.1 551558 D 278197 CDS YP_804033.1 116492298 4418326 complement(552310..553239) 1 NC_008525.1 IS30 family transposase 553239 4418326 PEPE_0498 Pediococcus pentosaceus ATCC 25745 IS30 family transposase YP_804033.1 552310 R 278197 CDS YP_804034.1 116492299 4418327 complement(553347..553748) 1 NC_008525.1 pyridoxine 5'-phosphate oxidase V related favin-nucleotide-binding protein 553748 4418327 PEPE_0499 Pediococcus pentosaceus ATCC 25745 pyridoxine 5'-phosphate oxidase V related favin-nucleotide-binding protein YP_804034.1 553347 R 278197 CDS YP_804035.1 116492300 4418328 554364..554537 1 NC_008525.1 hypothetical protein 554537 4418328 PEPE_0500 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804035.1 554364 D 278197 CDS YP_804036.1 116492301 4418329 complement(554786..554977) 1 NC_008525.1 hypothetical protein 554977 4418329 PEPE_0501 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804036.1 554786 R 278197 CDS YP_804037.1 116492302 4418330 555105..556634 1 NC_008525.1 putative multicopper oxidase 556634 4418330 PEPE_0502 Pediococcus pentosaceus ATCC 25745 putative multicopper oxidase YP_804037.1 555105 D 278197 CDS YP_804038.1 116492303 4418331 556673..558046 1 NC_008525.1 major facilitator superfamily permease 558046 4418331 PEPE_0503 Pediococcus pentosaceus ATCC 25745 major facilitator superfamily permease YP_804038.1 556673 D 278197 CDS YP_804039.1 116492304 4418297 558257..558595 1 NC_008525.1 hypothetical protein 558595 4418297 PEPE_0504 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804039.1 558257 D 278197 CDS YP_804040.1 116492305 4418298 558703..558816 1 NC_008525.1 hypothetical protein 558816 4418298 PEPE_0505 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804040.1 558703 D 278197 CDS YP_804041.1 116492306 4418299 558813..559418 1 NC_008525.1 Phage Mu protein F like protein 559418 4418299 PEPE_0506 Pediococcus pentosaceus ATCC 25745 Phage Mu protein F like protein YP_804041.1 558813 D 278197 CDS YP_804042.1 116492307 4418300 complement(559537..559785) 1 NC_008525.1 hypothetical protein 559785 4418300 PEPE_0507 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804042.1 559537 R 278197 CDS YP_804043.1 116492308 4418301 complement(559792..559923) 1 NC_008525.1 hypothetical protein 559923 4418301 PEPE_0508 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804043.1 559792 R 278197 CDS YP_804044.1 116492309 4418302 560133..560279 1 NC_008525.1 hypothetical protein 560279 4418302 PEPE_0509 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804044.1 560133 D 278197 CDS YP_804045.1 116492310 4418304 complement(561046..561876) 1 NC_008525.1 AraC family transcriptional regulator 561876 4418304 PEPE_0511 Pediococcus pentosaceus ATCC 25745 AraC family transcriptional regulator YP_804045.1 561046 R 278197 CDS YP_804046.1 116492311 4418305 562111..564039 1 NC_008525.1 Na+/xyloside symporter related transporter 564039 4418305 PEPE_0512 Pediococcus pentosaceus ATCC 25745 Na+/xyloside symporter related transporter YP_804046.1 562111 D 278197 CDS YP_804047.1 116492312 4418306 564097..566298 1 NC_008525.1 Alpha-galactosidase 566298 4418306 PEPE_0513 Pediococcus pentosaceus ATCC 25745 Alpha-galactosidase YP_804047.1 564097 D 278197 CDS YP_804048.1 116492313 4418308 568566..568772 1 NC_008525.1 small membrane protein 568772 4418308 PEPE_0515 Pediococcus pentosaceus ATCC 25745 small membrane protein YP_804048.1 568566 D 278197 CDS YP_804049.1 116492314 4418309 complement(568850..569716) 1 NC_008525.1 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase / fructokinase 569716 4418309 PEPE_0516 Pediococcus pentosaceus ATCC 25745 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase / fructokinase YP_804049.1 568850 R 278197 CDS YP_804050.1 116492315 4418310 complement(569796..571955) 1 NC_008525.1 Alpha-galactosidase 571955 4418310 PEPE_0517 Pediococcus pentosaceus ATCC 25745 Alpha-galactosidase YP_804050.1 569796 R 278197 CDS YP_804051.1 116492316 4418311 complement(571975..573930) 1 NC_008525.1 sucrose PTS, EIIBCA 573930 4418311 PEPE_0518 Pediococcus pentosaceus ATCC 25745 sucrose PTS, EIIBCA YP_804051.1 571975 R 278197 CDS YP_804052.1 116492317 4418312 574186..575691 1 NC_008525.1 beta-fructofuranosidase 575691 4418312 PEPE_0519 Pediococcus pentosaceus ATCC 25745 beta-fructofuranosidase YP_804052.1 574186 D 278197 CDS YP_804053.1 116492318 4418313 575672..576652 1 NC_008525.1 LacI family transcription regulator 576652 4418313 PEPE_0520 Pediococcus pentosaceus ATCC 25745 LacI family transcription regulator YP_804053.1 575672 D 278197 CDS YP_804054.1 116492319 4418279 576673..578349 1 NC_008525.1 oligo-1,6-glucosidase 578349 4418279 PEPE_0521 Pediococcus pentosaceus ATCC 25745 oligo-1,6-glucosidase YP_804054.1 576673 D 278197 CDS YP_804055.1 116492320 4418280 complement(578507..578764) 1 NC_008525.1 NADPH:quinone reductase related Zn-dependent oxidoreductase 578764 4418280 PEPE_0522 Pediococcus pentosaceus ATCC 25745 NADPH:quinone reductase related Zn-dependent oxidoreductase YP_804055.1 578507 R 278197 CDS YP_804056.1 116492321 4418281 578915..579166 1 NC_008525.1 transposase 579166 4418281 PEPE_0523 Pediococcus pentosaceus ATCC 25745 transposase YP_804056.1 578915 D 278197 CDS YP_804057.1 116492322 4418282 579439..580029 1 NC_008525.1 transposase 580029 4418282 PEPE_0524 Pediococcus pentosaceus ATCC 25745 transposase YP_804057.1 579439 D 278197 CDS YP_804058.1 116492323 4418283 580444..580689 1 NC_008525.1 hypothetical protein 580689 4418283 PEPE_0525 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804058.1 580444 D 278197 CDS YP_804059.1 116492324 4418285 581183..581467 1 NC_008525.1 transcriptional regulator 581467 4418285 PEPE_0527 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_804059.1 581183 D 278197 CDS YP_804060.1 116492325 4418286 581988..583346 1 NC_008525.1 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, related enzyme 583346 4418286 PEPE_0528 Pediococcus pentosaceus ATCC 25745 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, related enzyme YP_804060.1 581988 D 278197 CDS YP_804061.1 116492326 4418287 584203..584382 1 NC_008525.1 hypothetical protein 584382 4418287 PEPE_0529 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804061.1 584203 D 278197 CDS YP_804062.1 116492327 4418289 complement(585611..587089) 1 NC_008525.1 MutH family type II restriction endonuclease 587089 4418289 PEPE_0531 Pediococcus pentosaceus ATCC 25745 MutH family type II restriction endonuclease YP_804062.1 585611 R 278197 CDS YP_804063.1 116492328 4418290 587203..588489 1 NC_008525.1 site-specific DNA methylase 588489 4418290 PEPE_0532 Pediococcus pentosaceus ATCC 25745 site-specific DNA methylase YP_804063.1 587203 D 278197 CDS YP_804064.1 116492329 4418291 588654..591155 1 NC_008525.1 hypothetical protein 591155 4418291 PEPE_0533 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804064.1 588654 D 278197 CDS YP_804065.1 116492330 4418292 591152..592354 1 NC_008525.1 hypothetical protein 592354 4418292 PEPE_0534 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804065.1 591152 D 278197 CDS YP_804066.1 116492331 4418293 592347..594929 1 NC_008525.1 SNF2 family DNA/RNA helicase 594929 4418293 PEPE_0535 Pediococcus pentosaceus ATCC 25745 SNF2 family DNA/RNA helicase YP_804066.1 592347 D 278197 CDS YP_804067.1 116492332 4418294 595035..595256 1 NC_008525.1 hypothetical protein 595256 4418294 PEPE_0536 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804067.1 595035 D 278197 CDS YP_804068.1 116492333 4418295 complement(595591..597213) 1 NC_008525.1 recombinase D 597213 4418295 PEPE_0537 Pediococcus pentosaceus ATCC 25745 recombinase D YP_804068.1 595591 R 278197 CDS YP_804069.1 116492334 4418296 complement(597526..597951) 1 NC_008525.1 hypothetical protein 597951 4418296 PEPE_0538 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804069.1 597526 R 278197 CDS YP_804070.1 116492335 4418263 complement(598107..598337) 1 NC_008525.1 hypothetical protein 598337 4418263 PEPE_0539 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804070.1 598107 R 278197 CDS YP_804071.1 116492336 4418264 598886..600040 1 NC_008525.1 integrase 600040 4418264 PEPE_0540 Pediococcus pentosaceus ATCC 25745 integrase YP_804071.1 598886 D 278197 CDS YP_804072.1 116492337 4418266 complement(600666..600815) 1 NC_008525.1 hypothetical protein 600815 4418266 PEPE_0542 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804072.1 600666 R 278197 CDS YP_804073.1 116492338 4418267 600943..601755 1 NC_008525.1 LPS biosynthesis protein 601755 4418267 PEPE_0543 Pediococcus pentosaceus ATCC 25745 LPS biosynthesis protein YP_804073.1 600943 D 278197 CDS YP_804074.1 116492339 4418268 601771..602556 1 NC_008525.1 integral membrane protein 602556 4418268 PEPE_0544 Pediococcus pentosaceus ATCC 25745 integral membrane protein YP_804074.1 601771 D 278197 CDS YP_804075.1 116492340 4418269 complement(602575..603306) 1 NC_008525.1 Short-chain alcohol dehydrogenase of unknown specificity 603306 4418269 PEPE_0545 Pediococcus pentosaceus ATCC 25745 Short-chain alcohol dehydrogenase of unknown specificity YP_804075.1 602575 R 278197 CDS YP_804076.1 116492341 4418270 603387..603854 1 NC_008525.1 transcriptional regulator 603854 4418270 PEPE_0546 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_804076.1 603387 D 278197 CDS YP_804077.1 116492342 4418271 604220..605614 1 NC_008525.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 605614 asnC 4418271 asnC Pediococcus pentosaceus ATCC 25745 asparaginyl-tRNA synthetase YP_804077.1 604220 D 278197 CDS YP_804078.1 116492343 4418272 complement(605662..606102) 1 NC_008525.1 acetyltransferase 606102 4418272 PEPE_0548 Pediococcus pentosaceus ATCC 25745 acetyltransferase YP_804078.1 605662 R 278197 CDS YP_804079.1 116492344 4418273 complement(606127..606879) 1 NC_008525.1 AraC family transcriptional regulator 606879 4418273 PEPE_0549 Pediococcus pentosaceus ATCC 25745 AraC family transcriptional regulator YP_804079.1 606127 R 278197 CDS YP_804080.1 116492345 4418274 606986..609229 1 NC_008525.1 pyridine nucleotide-disulphide oxidoreductase 609229 4418274 PEPE_0550 Pediococcus pentosaceus ATCC 25745 pyridine nucleotide-disulphide oxidoreductase YP_804080.1 606986 D 278197 CDS YP_804081.1 116492346 4418275 609241..609441 1 NC_008525.1 sugar phosphate permease 609441 4418275 PEPE_0551 Pediococcus pentosaceus ATCC 25745 sugar phosphate permease YP_804081.1 609241 D 278197 CDS YP_804082.1 116492347 4418276 609484..610545 1 NC_008525.1 glycerol-3-phosphatase transporter 610545 4418276 PEPE_0552 Pediococcus pentosaceus ATCC 25745 glycerol-3-phosphatase transporter YP_804082.1 609484 D 278197 CDS YP_804083.1 116492348 4418277 complement(610583..610666) 1 NC_008525.1 hypothetical protein 610666 4418277 PEPE_0553 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804083.1 610583 R 278197 CDS YP_804084.1 116492349 4418278 complement(610660..611283) 1 NC_008525.1 multidrug ABC transporter 611283 4418278 PEPE_0554 Pediococcus pentosaceus ATCC 25745 multidrug ABC transporter YP_804084.1 610660 R 278197 CDS YP_804085.1 116492350 4418245 611746..612234 1 NC_008525.1 hypothetical protein 612234 4418245 PEPE_0555 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804085.1 611746 D 278197 CDS YP_804086.1 116492351 4418246 612292..613263 1 NC_008525.1 cell surface protein 613263 4418246 PEPE_0556 Pediococcus pentosaceus ATCC 25745 cell surface protein YP_804086.1 612292 D 278197 CDS YP_804087.1 116492352 4418247 complement(613308..613523) 1 NC_008525.1 hypothetical protein 613523 4418247 PEPE_0557 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804087.1 613308 R 278197 CDS YP_804088.1 116492353 4418248 613850..614647 1 NC_008525.1 hydroxyethylthiazole kinase 614647 4418248 PEPE_0558 Pediococcus pentosaceus ATCC 25745 hydroxyethylthiazole kinase YP_804088.1 613850 D 278197 CDS YP_804089.1 116492354 4418249 614651..615466 1 NC_008525.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 615466 4418249 PEPE_0559 Pediococcus pentosaceus ATCC 25745 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase YP_804089.1 614651 D 278197 CDS YP_804090.1 116492355 4418250 615463..616113 1 NC_008525.1 thiamine monophosphate synthase 616113 4418250 PEPE_0560 Pediococcus pentosaceus ATCC 25745 thiamine monophosphate synthase YP_804090.1 615463 D 278197 CDS YP_804091.1 116492356 4418251 616125..616799 1 NC_008525.1 putative transcription activator 616799 4418251 PEPE_0561 Pediococcus pentosaceus ATCC 25745 putative transcription activator YP_804091.1 616125 D 278197 CDS YP_804092.1 116492357 4418252 616919..618673 1 NC_008525.1 ATP-dependent DNA helicase RecQ 618673 4418252 PEPE_0562 Pediococcus pentosaceus ATCC 25745 ATP-dependent DNA helicase RecQ YP_804092.1 616919 D 278197 CDS YP_804093.1 116492358 4418253 618763..619464 1 NC_008525.1 Zn-dependent protease 619464 4418253 PEPE_0563 Pediococcus pentosaceus ATCC 25745 Zn-dependent protease YP_804093.1 618763 D 278197 CDS YP_804094.1 116492359 4418254 619637..620764 1 NC_008525.1 Beta-lactamase class C related penicillin binding protein 620764 4418254 PEPE_0564 Pediococcus pentosaceus ATCC 25745 Beta-lactamase class C related penicillin binding protein YP_804094.1 619637 D 278197 CDS YP_804095.1 116492360 4418255 620780..621565 1 NC_008525.1 capsular polysaccharide biosynthesis protein 621565 4418255 PEPE_0565 Pediococcus pentosaceus ATCC 25745 capsular polysaccharide biosynthesis protein YP_804095.1 620780 D 278197 CDS YP_804096.1 116492361 4418256 621575..622306 1 NC_008525.1 tyrosine-protein kinase 622306 4418256 PEPE_0566 Pediococcus pentosaceus ATCC 25745 tyrosine-protein kinase YP_804096.1 621575 D 278197 CDS YP_804097.1 116492362 4418257 622306..623097 1 NC_008525.1 capsular polysaccharide biosynthesis protein 623097 4418257 PEPE_0567 Pediococcus pentosaceus ATCC 25745 capsular polysaccharide biosynthesis protein YP_804097.1 622306 D 278197 CDS YP_804098.1 116492363 4418258 623109..623762 1 NC_008525.1 lipopolysaccharide synthesis sugar transferase 623762 4418258 PEPE_0568 Pediococcus pentosaceus ATCC 25745 lipopolysaccharide synthesis sugar transferase YP_804098.1 623109 D 278197 CDS YP_804099.1 116492364 4418259 623791..624573 1 NC_008525.1 lipopolysaccharide biosynthesis glycosyltransferase 624573 4418259 PEPE_0569 Pediococcus pentosaceus ATCC 25745 lipopolysaccharide biosynthesis glycosyltransferase YP_804099.1 623791 D 278197 CDS YP_804100.1 116492365 4418260 624623..625735 1 NC_008525.1 glycosyltransferase 625735 4418260 PEPE_0570 Pediococcus pentosaceus ATCC 25745 glycosyltransferase YP_804100.1 624623 D 278197 CDS YP_804101.1 116492366 4418261 625738..626736 1 NC_008525.1 glycosyltransferase 626736 4418261 PEPE_0571 Pediococcus pentosaceus ATCC 25745 glycosyltransferase YP_804101.1 625738 D 278197 CDS YP_804102.1 116492367 4418262 626775..627791 1 NC_008525.1 hypothetical protein 627791 4418262 PEPE_0572 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804102.1 626775 D 278197 CDS YP_804103.1 116492368 4418228 627933..629096 1 NC_008525.1 polysaccharide polymerase 629096 4418228 PEPE_0573 Pediococcus pentosaceus ATCC 25745 polysaccharide polymerase YP_804103.1 627933 D 278197 CDS YP_804104.1 116492369 4418229 629155..630273 1 NC_008525.1 UDP-galactopyranose mutase 630273 4418229 PEPE_0574 Pediococcus pentosaceus ATCC 25745 UDP-galactopyranose mutase YP_804104.1 629155 D 278197 CDS YP_804105.1 116492370 4418230 630302..631726 1 NC_008525.1 PST family polysaccharide transporter 631726 4418230 PEPE_0575 Pediococcus pentosaceus ATCC 25745 PST family polysaccharide transporter YP_804105.1 630302 D 278197 CDS YP_804106.1 116492371 4418231 631749..632717 1 NC_008525.1 glycosyltransferase-like protein 632717 4418231 PEPE_0576 Pediococcus pentosaceus ATCC 25745 glycosyltransferase-like protein YP_804106.1 631749 D 278197 CDS YP_804107.1 116492372 4418232 632823..633827 1 NC_008525.1 fucose 4-O-acetylase related acetyltransferase 633827 4418232 PEPE_0577 Pediococcus pentosaceus ATCC 25745 fucose 4-O-acetylase related acetyltransferase YP_804107.1 632823 D 278197 CDS YP_804108.1 116492373 4418233 634316..634621 1 NC_008525.1 cellobiose-specific PTS system IIB component 634621 4418233 PEPE_0578 Pediococcus pentosaceus ATCC 25745 cellobiose-specific PTS system IIB component YP_804108.1 634316 D 278197 CDS YP_804109.1 116492374 4418234 634637..635863 1 NC_008525.1 phosphotransferase system cellobiose-specific component IIC 635863 4418234 PEPE_0579 Pediococcus pentosaceus ATCC 25745 phosphotransferase system cellobiose-specific component IIC YP_804109.1 634637 D 278197 CDS YP_804110.1 116492375 4418235 635895..636245 1 NC_008525.1 cellobiose-specific PTS system IIA component 636245 4418235 PEPE_0580 Pediococcus pentosaceus ATCC 25745 cellobiose-specific PTS system IIA component YP_804110.1 635895 D 278197 CDS YP_804111.1 116492376 4418236 636245..637699 1 NC_008525.1 Beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase 637699 4418236 PEPE_0581 Pediococcus pentosaceus ATCC 25745 Beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase YP_804111.1 636245 D 278197 CDS YP_804112.1 116492377 4418237 637756..639633 1 NC_008525.1 transcriptional antiterminator 639633 4418237 PEPE_0582 Pediococcus pentosaceus ATCC 25745 transcriptional antiterminator YP_804112.1 637756 D 278197 CDS YP_804113.1 116492378 4418238 complement(639684..640205) 1 NC_008525.1 glycopeptide antibiotics resistance protein 640205 4418238 PEPE_0583 Pediococcus pentosaceus ATCC 25745 glycopeptide antibiotics resistance protein YP_804113.1 639684 R 278197 CDS YP_804114.1 116492379 4418239 complement(640240..641562) 1 NC_008525.1 amino acid transporter 641562 4418239 PEPE_0584 Pediococcus pentosaceus ATCC 25745 amino acid transporter YP_804114.1 640240 R 278197 CDS YP_804115.1 116492380 4418240 complement(641672..642604) 1 NC_008525.1 transcriptional regulator 642604 4418240 PEPE_0585 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_804115.1 641672 R 278197 CDS YP_804116.1 116492381 4418241 642693..643334 1 NC_008525.1 Acyl carrier protein phosphodiesterase 643334 4418241 PEPE_0586 Pediococcus pentosaceus ATCC 25745 Acyl carrier protein phosphodiesterase YP_804116.1 642693 D 278197 CDS YP_804117.1 116492382 4418242 643413..644186 1 NC_008525.1 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 644186 4418242 PEPE_0587 Pediococcus pentosaceus ATCC 25745 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) YP_804117.1 643413 D 278197 CDS YP_804118.1 116492383 4418243 complement(644217..644579) 1 NC_008525.1 hypothetical protein 644579 4418243 PEPE_0588 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804118.1 644217 R 278197 CDS YP_804119.1 116492384 4418244 644755..645762 1 NC_008525.1 dehydrogenase related protein 645762 4418244 PEPE_0589 Pediococcus pentosaceus ATCC 25745 dehydrogenase related protein YP_804119.1 644755 D 278197 CDS YP_804120.1 116492385 4418211 645769..647085 1 NC_008525.1 superfamily II DNA/RNA helicase 647085 4418211 PEPE_0590 Pediococcus pentosaceus ATCC 25745 superfamily II DNA/RNA helicase YP_804120.1 645769 D 278197 CDS YP_804121.1 116492386 4418212 647178..648206 1 NC_008525.1 transcriptional regulator 648206 4418212 PEPE_0591 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_804121.1 647178 D 278197 CDS YP_804122.1 116492387 4418213 648229..648468 1 NC_008525.1 hypothetical protein 648468 4418213 PEPE_0592 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804122.1 648229 D 278197 CDS YP_804123.1 116492388 4418214 648774..649022 1 NC_008525.1 hypothetical protein 649022 4418214 PEPE_0593 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804123.1 648774 D 278197 CDS YP_804124.1 116492389 4418216 649596..650573 1 NC_008525.1 guanosine 5'-monophosphate oxidoreductase 650573 4418216 PEPE_0595 Pediococcus pentosaceus ATCC 25745 guanosine 5'-monophosphate oxidoreductase YP_804124.1 649596 D 278197 CDS YP_804125.1 116492390 4418217 complement(650750..651988) 1 NC_008525.1 PepS aminopeptidase 651988 4418217 PEPE_0596 Pediococcus pentosaceus ATCC 25745 PepS aminopeptidase YP_804125.1 650750 R 278197 CDS YP_804126.1 116492391 4418218 652082..653194 1 NC_008525.1 UDP-N-acetylglucosamine 2-epimerase 653194 4418218 PEPE_0597 Pediococcus pentosaceus ATCC 25745 UDP-N-acetylglucosamine 2-epimerase YP_804126.1 652082 D 278197 CDS YP_804127.1 116492392 4418219 complement(653296..653751) 1 NC_008525.1 flavodoxin 653751 4418219 PEPE_0598 Pediococcus pentosaceus ATCC 25745 flavodoxin YP_804127.1 653296 R 278197 CDS YP_804128.1 116492393 4418220 653845..654621 1 NC_008525.1 hypothetical protein 654621 4418220 PEPE_0599 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804128.1 653845 D 278197 CDS YP_804129.1 116492394 4418221 654724..655278 1 NC_008525.1 hypothetical protein 655278 4418221 PEPE_0600 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804129.1 654724 D 278197 CDS YP_804130.1 116492395 4418222 655360..656490 1 NC_008525.1 permease 656490 4418222 PEPE_0601 Pediococcus pentosaceus ATCC 25745 permease YP_804130.1 655360 D 278197 CDS YP_804131.1 116492396 4418223 656566..656970 1 NC_008525.1 glycerol-3-phosphate cytidylyltransferase 656970 4418223 PEPE_0602 Pediococcus pentosaceus ATCC 25745 glycerol-3-phosphate cytidylyltransferase YP_804131.1 656566 D 278197 CDS YP_804132.1 116492397 4418224 657038..658606 1 NC_008525.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 658606 prfC 4418224 prfC Pediococcus pentosaceus ATCC 25745 peptide chain release factor 3 YP_804132.1 657038 D 278197 CDS YP_804133.1 116492398 4418225 658712..660886 1 NC_008525.1 phosphoglycerol transferase/alkaline phosphatase superfamily protein 660886 4418225 PEPE_0604 Pediococcus pentosaceus ATCC 25745 phosphoglycerol transferase/alkaline phosphatase superfamily protein YP_804133.1 658712 D 278197 CDS YP_804134.1 116492399 4418226 660954..661799 1 NC_008525.1 permease 661799 4418226 PEPE_0605 Pediococcus pentosaceus ATCC 25745 permease YP_804134.1 660954 D 278197 CDS YP_804135.1 116492400 4418227 661799..662161 1 NC_008525.1 hypothetical protein 662161 4418227 PEPE_0606 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804135.1 661799 D 278197 CDS YP_804136.1 116492401 4418198 complement(662216..664282) 1 NC_008525.1 ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones 664282 4418198 PEPE_0607 Pediococcus pentosaceus ATCC 25745 ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones YP_804136.1 662216 R 278197 CDS YP_804137.1 116492402 4418199 664640..664828 1 NC_008525.1 hypothetical protein 664828 4418199 PEPE_0608 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804137.1 664640 D 278197 CDS YP_804138.1 116492403 4418200 664974..665240 1 NC_008525.1 phosphocarrier protein HPr 665240 4418200 PEPE_0609 Pediococcus pentosaceus ATCC 25745 phosphocarrier protein HPr YP_804138.1 664974 D 278197 CDS YP_804139.1 116492404 4418201 665240..666964 1 NC_008525.1 phosphoenolpyruvate--protein phosphotransferase 666964 4418201 PEPE_0610 Pediococcus pentosaceus ATCC 25745 phosphoenolpyruvate--protein phosphotransferase YP_804139.1 665240 D 278197 CDS YP_804140.1 116492405 4418202 667037..667810 1 NC_008525.1 alpha/beta fold family hydrolase 667810 4418202 PEPE_0611 Pediococcus pentosaceus ATCC 25745 alpha/beta fold family hydrolase YP_804140.1 667037 D 278197 CDS YP_804141.1 116492406 4418203 667900..669075 1 NC_008525.1 1,2-diacylglycerol 3-glucosyltransferase 669075 4418203 PEPE_0612 Pediococcus pentosaceus ATCC 25745 1,2-diacylglycerol 3-glucosyltransferase YP_804141.1 667900 D 278197 CDS YP_804142.1 116492407 4418204 669125..670141 1 NC_008525.1 glycosyltransferase 670141 4418204 PEPE_0613 Pediococcus pentosaceus ATCC 25745 glycosyltransferase YP_804142.1 669125 D 278197 CDS YP_804143.1 116492408 4418205 670155..671189 1 NC_008525.1 integral membrane protein 671189 4418205 PEPE_0614 Pediococcus pentosaceus ATCC 25745 integral membrane protein YP_804143.1 670155 D 278197 CDS YP_804144.1 116492409 4418525 678838..680571 1 NC_008525.1 pyruvate oxidase 680571 4418525 PEPE_0639 Pediococcus pentosaceus ATCC 25745 pyruvate oxidase YP_804144.1 678838 D 278197 CDS YP_804145.1 116492410 4418526 complement(680641..681372) 1 NC_008525.1 hypothetical protein 681372 4418526 PEPE_0640 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804145.1 680641 R 278197 CDS YP_804146.1 116492411 4418527 681545..682735 1 NC_008525.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 682735 4418527 PEPE_0641 Pediococcus pentosaceus ATCC 25745 S-adenosylmethionine synthetase YP_804146.1 681545 D 278197 CDS YP_804147.1 116492412 4418528 682810..684276 1 NC_008525.1 major facilitator superfamily permease 684276 4418528 PEPE_0642 Pediococcus pentosaceus ATCC 25745 major facilitator superfamily permease YP_804147.1 682810 D 278197 CDS YP_804148.1 116492413 4418529 complement(684323..684886) 1 NC_008525.1 SAM-dependent methyltransferase 684886 4418529 PEPE_0643 Pediococcus pentosaceus ATCC 25745 SAM-dependent methyltransferase YP_804148.1 684323 R 278197 CDS YP_804149.1 116492414 4418530 complement(684879..685511) 1 NC_008525.1 membrane-associated phospholipid phosphatase 685511 4418530 PEPE_0644 Pediococcus pentosaceus ATCC 25745 membrane-associated phospholipid phosphatase YP_804149.1 684879 R 278197 CDS YP_804150.1 116492415 4418531 685858..688275 1 NC_008525.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 688275 leuS 4418531 leuS Pediococcus pentosaceus ATCC 25745 leucyl-tRNA synthetase YP_804150.1 685858 D 278197 CDS YP_804151.1 116492416 4418532 688479..690164 1 NC_008525.1 polysaccharide transporter 690164 4418532 PEPE_0646 Pediococcus pentosaceus ATCC 25745 polysaccharide transporter YP_804151.1 688479 D 278197 CDS YP_804152.1 116492417 4418533 690173..690892 1 NC_008525.1 ribosomal small subunit pseudouridine synthase A 690892 4418533 PEPE_0647 Pediococcus pentosaceus ATCC 25745 ribosomal small subunit pseudouridine synthase A YP_804152.1 690173 D 278197 CDS YP_804153.1 116492418 4418534 complement(690915..691754) 1 NC_008525.1 sugar kinase 691754 4418534 PEPE_0648 Pediococcus pentosaceus ATCC 25745 sugar kinase YP_804153.1 690915 R 278197 CDS YP_804154.1 116492419 4418535 691889..692341 1 NC_008525.1 universal stress protein UspA-like nucleotide-binding protein 692341 4418535 PEPE_0649 Pediococcus pentosaceus ATCC 25745 universal stress protein UspA-like nucleotide-binding protein YP_804154.1 691889 D 278197 CDS YP_804155.1 116492420 4418536 complement(692419..693078) 1 NC_008525.1 deoxynucleoside kinase 693078 4418536 PEPE_0650 Pediococcus pentosaceus ATCC 25745 deoxynucleoside kinase YP_804155.1 692419 R 278197 CDS YP_804156.1 116492421 4418149 693323..694144 1 NC_008525.1 HAD superfamily hydrolase 694144 4418149 PEPE_0651 Pediococcus pentosaceus ATCC 25745 HAD superfamily hydrolase YP_804156.1 693323 D 278197 CDS YP_804157.1 116492422 4418150 694149..694349 1 NC_008525.1 hypothetical protein 694349 4418150 PEPE_0652 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804157.1 694149 D 278197 CDS YP_804158.1 116492423 4418151 694346..694561 1 NC_008525.1 hypothetical protein 694561 4418151 PEPE_0653 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804158.1 694346 D 278197 CDS YP_804159.1 116492424 4418152 694562..694840 1 NC_008525.1 hypothetical protein 694840 4418152 PEPE_0654 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804159.1 694562 D 278197 CDS YP_804160.1 116492425 4418153 complement(694940..695164) 1 NC_008525.1 hypothetical protein 695164 4418153 PEPE_0655 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804160.1 694940 R 278197 CDS YP_804161.1 116492426 4418155 695602..696240 1 NC_008525.1 carbonic anhydrase 696240 4418155 PEPE_0657 Pediococcus pentosaceus ATCC 25745 carbonic anhydrase YP_804161.1 695602 D 278197 CDS YP_804162.1 116492427 4418156 complement(696320..696829) 1 NC_008525.1 hypothetical protein 696829 4418156 PEPE_0658 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804162.1 696320 R 278197 CDS YP_804163.1 116492428 4418157 697166..699046 1 NC_008525.1 asparagine synthase (glutamine-hydrolyzing) 699046 4418157 PEPE_0659 Pediococcus pentosaceus ATCC 25745 asparagine synthase (glutamine-hydrolyzing) YP_804163.1 697166 D 278197 CDS YP_804164.1 116492429 4418158 699062..700585 1 NC_008525.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 700585 murE 4418158 murE Pediococcus pentosaceus ATCC 25745 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_804164.1 699062 D 278197 CDS YP_804165.1 116492430 4418159 700585..701841 1 NC_008525.1 ATP-grasp protein 701841 4418159 PEPE_0661 Pediococcus pentosaceus ATCC 25745 ATP-grasp protein YP_804165.1 700585 D 278197 CDS YP_804166.1 116492431 4418160 701847..702554 1 NC_008525.1 aspartate racemase 702554 4418160 PEPE_0662 Pediococcus pentosaceus ATCC 25745 aspartate racemase YP_804166.1 701847 D 278197 CDS YP_804167.1 116492432 4418161 702624..703436 1 NC_008525.1 DNA-entry nuclease 703436 4418161 PEPE_0663 Pediococcus pentosaceus ATCC 25745 DNA-entry nuclease YP_804167.1 702624 D 278197 CDS YP_804168.1 116492433 4418162 703568..705013 1 NC_008525.1 amino acid transporter 705013 4418162 PEPE_0664 Pediococcus pentosaceus ATCC 25745 amino acid transporter YP_804168.1 703568 D 278197 CDS YP_804169.1 116492434 4418131 complement(705289..705573) 1 NC_008525.1 hypothetical protein 705573 4418131 PEPE_0666 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804169.1 705289 R 278197 CDS YP_804170.1 116492435 4418132 complement(705651..706463) 1 NC_008525.1 HAD superfamily hydrolase 706463 4418132 PEPE_0667 Pediococcus pentosaceus ATCC 25745 HAD superfamily hydrolase YP_804170.1 705651 R 278197 CDS YP_804171.1 116492436 4418133 706672..707517 1 NC_008525.1 Aryl-alcohol dehydrogenase related enzyme 707517 4418133 PEPE_0668 Pediococcus pentosaceus ATCC 25745 Aryl-alcohol dehydrogenase related enzyme YP_804171.1 706672 D 278197 CDS YP_804172.1 116492437 4418134 707778..709466 1 NC_008525.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 709466 argS 4418134 argS Pediococcus pentosaceus ATCC 25745 arginyl-tRNA synthetase YP_804172.1 707778 D 278197 CDS YP_804173.1 116492438 4418135 709732..710403 1 NC_008525.1 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase 710403 4418135 PEPE_0670 Pediococcus pentosaceus ATCC 25745 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase YP_804173.1 709732 D 278197 CDS YP_804174.1 116492439 4418136 710426..710884 1 NC_008525.1 ArgR family transcriptional regulator 710884 4418136 PEPE_0671 Pediococcus pentosaceus ATCC 25745 ArgR family transcriptional regulator YP_804174.1 710426 D 278197 CDS YP_804175.1 116492440 4418137 710987..713140 1 NC_008525.1 membrane carboxypeptidase (penicillin-binding protein) 713140 4418137 PEPE_0672 Pediococcus pentosaceus ATCC 25745 membrane carboxypeptidase (penicillin-binding protein) YP_804175.1 710987 D 278197 CDS YP_804176.1 116492441 4418138 713205..713549 1 NC_008525.1 hypothetical protein 713549 4418138 PEPE_0673 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804176.1 713205 D 278197 CDS YP_804177.1 116492442 4418139 713664..714887 1 NC_008525.1 DNA repair exonuclease 714887 4418139 PEPE_0674 Pediococcus pentosaceus ATCC 25745 DNA repair exonuclease YP_804177.1 713664 D 278197 CDS YP_804178.1 116492443 4418140 714877..717453 1 NC_008525.1 DNA repair ATPase 717453 4418140 PEPE_0675 Pediococcus pentosaceus ATCC 25745 DNA repair ATPase YP_804178.1 714877 D 278197 CDS YP_804179.1 116492444 4418141 717468..718415 1 NC_008525.1 HD-superfamily hydrolase 718415 4418141 PEPE_0676 Pediococcus pentosaceus ATCC 25745 HD-superfamily hydrolase YP_804179.1 717468 D 278197 CDS YP_804180.1 116492445 4418142 complement(718456..719343) 1 NC_008525.1 cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein; peptidylprolyl isomerase 719343 prsA 4418142 prsA Pediococcus pentosaceus ATCC 25745 peptidylprolyl isomerase YP_804180.1 718456 R 278197 CDS YP_804181.1 116492446 4418143 complement(719450..719815) 1 NC_008525.1 hypothetical protein 719815 4418143 PEPE_0678 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804181.1 719450 R 278197 CDS YP_804182.1 116492447 4418144 complement(719818..720249) 1 NC_008525.1 diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 720249 4418144 PEPE_0679 Pediococcus pentosaceus ATCC 25745 diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases YP_804182.1 719818 R 278197 CDS YP_804183.1 116492448 4418145 720387..721124 1 NC_008525.1 ABC-type multidrug transport system, ATPase component 721124 4418145 PEPE_0680 Pediococcus pentosaceus ATCC 25745 ABC-type multidrug transport system, ATPase component YP_804183.1 720387 D 278197 CDS YP_804184.1 116492449 4418146 721117..722316 1 NC_008525.1 ABC transporter permease 722316 4418146 PEPE_0681 Pediococcus pentosaceus ATCC 25745 ABC transporter permease YP_804184.1 721117 D 278197 CDS YP_804185.1 116492450 4418147 722332..722970 1 NC_008525.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 722970 trmB 4418147 trmB Pediococcus pentosaceus ATCC 25745 tRNA (guanine-N(7)-)-methyltransferase YP_804185.1 722332 D 278197 CDS YP_804186.1 116492451 4418148 complement(723027..723353) 1 NC_008525.1 hypothetical protein 723353 4418148 PEPE_0683 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804186.1 723027 R 278197 CDS YP_804187.1 116492452 4418114 723436..724068 1 NC_008525.1 EMAP domain-containing protein 724068 4418114 PEPE_0684 Pediococcus pentosaceus ATCC 25745 EMAP domain-containing protein YP_804187.1 723436 D 278197 CDS YP_804188.1 116492453 4418115 724082..725998 1 NC_008525.1 DNA segregation ATPase FtsK/SpoIIIE related protein 725998 4418115 PEPE_0685 Pediococcus pentosaceus ATCC 25745 DNA segregation ATPase FtsK/SpoIIIE related protein YP_804188.1 724082 D 278197 CDS YP_804189.1 116492454 4418116 726040..727350 1 NC_008525.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 727350 murC 4418116 murC Pediococcus pentosaceus ATCC 25745 UDP-N-acetylmuramate--L-alanine ligase YP_804189.1 726040 D 278197 CDS YP_804190.1 116492455 4418117 727452..728150 1 NC_008525.1 integral membrane protein, interacts with FtsH 728150 4418117 PEPE_0687 Pediococcus pentosaceus ATCC 25745 integral membrane protein, interacts with FtsH YP_804190.1 727452 D 278197 CDS YP_804191.1 116492456 4418118 728250..730913 1 NC_008525.1 DNA polymerase I 730913 4418118 PEPE_0688 Pediococcus pentosaceus ATCC 25745 DNA polymerase I YP_804191.1 728250 D 278197 CDS YP_804192.1 116492457 4418119 730926..731753 1 NC_008525.1 formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase 731753 4418119 PEPE_0689 Pediococcus pentosaceus ATCC 25745 formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase YP_804192.1 730926 D 278197 CDS YP_804193.1 116492458 4418120 731758..732348 1 NC_008525.1 dephospho-CoA kinase 732348 4418120 PEPE_0690 Pediococcus pentosaceus ATCC 25745 dephospho-CoA kinase YP_804193.1 731758 D 278197 CDS YP_804194.1 116492459 4418121 732380..732853 1 NC_008525.1 transcriptional regulator NrdR 732853 nrdR 4418121 nrdR Pediococcus pentosaceus ATCC 25745 transcriptional regulator NrdR YP_804194.1 732380 D 278197 CDS YP_804195.1 116492460 4418122 732854..734224 1 NC_008525.1 replicative DNA helicase loader DnaB 734224 4418122 PEPE_0692 Pediococcus pentosaceus ATCC 25745 replicative DNA helicase loader DnaB YP_804195.1 732854 D 278197 CDS YP_804196.1 116492461 4418123 734227..735156 1 NC_008525.1 Primosomal protein that may act to load helicase DnaC during DNA replication; primosomal protein DnaI 735156 4418123 PEPE_0693 Pediococcus pentosaceus ATCC 25745 primosomal protein DnaI YP_804196.1 734227 D 278197 CDS YP_804197.1 116492462 4418124 735449..737395 1 NC_008525.1 Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase 737395 4418124 PEPE_0694 Pediococcus pentosaceus ATCC 25745 Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase YP_804197.1 735449 D 278197 CDS YP_804198.1 116492463 4418125 737548..739287 1 NC_008525.1 membrane signal transduction histidine kinase 739287 4418125 PEPE_0695 Pediococcus pentosaceus ATCC 25745 membrane signal transduction histidine kinase YP_804198.1 737548 D 278197 CDS YP_804199.1 116492464 4418126 739293..740024 1 NC_008525.1 response regulator 740024 4418126 PEPE_0696 Pediococcus pentosaceus ATCC 25745 response regulator YP_804199.1 739293 D 278197 CDS YP_804200.1 116492465 4418127 740253..740657 1 NC_008525.1 putative effector of murein hydrolase LrgA 740657 4418127 PEPE_0697 Pediococcus pentosaceus ATCC 25745 putative effector of murein hydrolase LrgA YP_804200.1 740253 D 278197 CDS YP_804201.1 116492466 4418128 740659..741387 1 NC_008525.1 putative effector of murein hydrolase 741387 4418128 PEPE_0698 Pediococcus pentosaceus ATCC 25745 putative effector of murein hydrolase YP_804201.1 740659 D 278197 CDS YP_804202.1 116492467 4418129 741626..742126 1 NC_008525.1 IF-3; translation initiation factor 3 742126 4418129 PEPE_0699 Pediococcus pentosaceus ATCC 25745 translation initiation factor 3 YP_804202.1 741626 D 278197 CDS YP_804203.1 116492468 4418130 742151..742348 1 NC_008525.1 50S ribosomal protein L35 742348 rpmI 4418130 rpmI Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L35 YP_804203.1 742151 D 278197 CDS YP_804204.1 116492469 4418096 742405..742758 1 NC_008525.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 742758 rplT 4418096 rplT Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L20 YP_804204.1 742405 D 278197 CDS YP_804205.1 116492470 4418097 complement(742852..743778) 1 NC_008525.1 NADPH:quinone reductase related Zn-dependent oxidoreductase 743778 4418097 PEPE_0702 Pediococcus pentosaceus ATCC 25745 NADPH:quinone reductase related Zn-dependent oxidoreductase YP_804205.1 742852 R 278197 CDS YP_804206.1 116492471 4418098 743920..744444 1 NC_008525.1 HAD superfamily hydrolase 744444 4418098 PEPE_0703 Pediococcus pentosaceus ATCC 25745 HAD superfamily hydrolase YP_804206.1 743920 D 278197 CDS YP_804207.1 116492472 4418099 744445..745557 1 NC_008525.1 in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis; GTP-binding protein YqeH 745557 4418099 PEPE_0704 Pediococcus pentosaceus ATCC 25745 GTP-binding protein YqeH YP_804207.1 744445 D 278197 CDS YP_804208.1 116492473 4418100 745580..745891 1 NC_008525.1 RNA-binding protein 745891 4418100 PEPE_0705 Pediococcus pentosaceus ATCC 25745 RNA-binding protein YP_804208.1 745580 D 278197 CDS YP_804209.1 116492474 4418101 745908..746552 1 NC_008525.1 nicotinate-nucleotide adenylyltransferase 746552 4418101 PEPE_0706 Pediococcus pentosaceus ATCC 25745 nicotinate-nucleotide adenylyltransferase YP_804209.1 745908 D 278197 CDS YP_804210.1 116492475 4418102 746542..747150 1 NC_008525.1 HD superfamily NAD metabolism hydrolase 747150 4418102 PEPE_0707 Pediococcus pentosaceus ATCC 25745 HD superfamily NAD metabolism hydrolase YP_804210.1 746542 D 278197 CDS YP_804211.1 116492476 4418103 747167..747523 1 NC_008525.1 Iojap family protein 747523 4418103 PEPE_0708 Pediococcus pentosaceus ATCC 25745 Iojap family protein YP_804211.1 747167 D 278197 CDS YP_804212.1 116492477 4418104 747523..748260 1 NC_008525.1 SAM-dependent methyltransferase 748260 4418104 PEPE_0709 Pediococcus pentosaceus ATCC 25745 SAM-dependent methyltransferase YP_804212.1 747523 D 278197 CDS YP_804213.1 116492478 4418105 748266..749366 1 NC_008525.1 nucleotidyltransferase 749366 4418105 PEPE_0710 Pediococcus pentosaceus ATCC 25745 nucleotidyltransferase YP_804213.1 748266 D 278197 CDS YP_804214.1 116492479 4418106 749424..749963 1 NC_008525.1 metal-binding protein 749963 4418106 PEPE_0711 Pediococcus pentosaceus ATCC 25745 metal-binding protein YP_804214.1 749424 D 278197 CDS YP_804215.1 116492480 4418107 750013..750195 1 NC_008525.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 750195 rpmF 4418107 rpmF Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L32 YP_804215.1 750013 D 278197 CDS YP_804216.1 116492481 4418108 750429..751847 1 NC_008525.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 751847 4418108 PEPE_0713 Pediococcus pentosaceus ATCC 25745 6-phosphogluconate dehydrogenase YP_804216.1 750429 D 278197 CDS YP_804217.1 116492482 4418109 752282..752968 1 NC_008525.1 DNA-binding response regulator 752968 4418109 PEPE_0714 Pediococcus pentosaceus ATCC 25745 DNA-binding response regulator YP_804217.1 752282 D 278197 CDS YP_804218.1 116492483 4418110 752970..754451 1 NC_008525.1 Signal transduction histidine kinase 754451 4418110 PEPE_0715 Pediococcus pentosaceus ATCC 25745 Signal transduction histidine kinase YP_804218.1 752970 D 278197 CDS YP_804219.1 116492484 4418111 complement(754512..755462) 1 NC_008525.1 preprotein translocase subunit YidC 755462 4418111 PEPE_0716 Pediococcus pentosaceus ATCC 25745 preprotein translocase subunit YidC YP_804219.1 754512 R 278197 CDS YP_804220.1 116492485 4418112 complement(755542..755814) 1 NC_008525.1 acylphosphatase 755814 4418112 PEPE_0717 Pediococcus pentosaceus ATCC 25745 acylphosphatase YP_804220.1 755542 R 278197 CDS YP_804221.1 116492486 4418113 756000..756767 1 NC_008525.1 rRNA methylase 756767 4418113 PEPE_0718 Pediococcus pentosaceus ATCC 25745 rRNA methylase YP_804221.1 756000 D 278197 CDS YP_804222.1 116492487 4418079 756865..757374 1 NC_008525.1 HD superfamily hydrolase 757374 4418079 PEPE_0719 Pediococcus pentosaceus ATCC 25745 HD superfamily hydrolase YP_804222.1 756865 D 278197 CDS YP_804223.1 116492488 4418080 757392..757724 1 NC_008525.1 transcriptional regulator 757724 4418080 PEPE_0720 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_804223.1 757392 D 278197 CDS YP_804224.1 116492489 4418081 757981..759048 1 NC_008525.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 759048 pheS 4418081 pheS Pediococcus pentosaceus ATCC 25745 phenylalanyl-tRNA synthetase subunit alpha YP_804224.1 757981 D 278197 CDS YP_804225.1 116492490 4418082 759055..761484 1 NC_008525.1 phenylalanyl-tRNA synthetase beta subunit 761484 4418082 PEPE_0722 Pediococcus pentosaceus ATCC 25745 phenylalanyl-tRNA synthetase beta subunit YP_804225.1 759055 D 278197 CDS YP_804226.1 116492491 4418083 761571..762737 1 NC_008525.1 periplasmic solute-binding protein 762737 4418083 PEPE_0723 Pediococcus pentosaceus ATCC 25745 periplasmic solute-binding protein YP_804226.1 761571 D 278197 CDS YP_804227.1 116492492 4418084 762753..763409 1 NC_008525.1 uridine kinase 763409 4418084 PEPE_0724 Pediococcus pentosaceus ATCC 25745 uridine kinase YP_804227.1 762753 D 278197 CDS YP_804228.1 116492493 4418085 763425..763907 1 NC_008525.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 763907 greA 4418085 greA Pediococcus pentosaceus ATCC 25745 transcription elongation factor GreA YP_804228.1 763425 D 278197 CDS YP_804229.1 116492494 4418086 complement(763934..766549) 1 NC_008525.1 hypothetical protein 766549 4418086 PEPE_0726 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804229.1 763934 R 278197 CDS YP_804230.1 116492495 4418087 766682..768772 1 NC_008525.1 cell division protein FtsI 768772 4418087 PEPE_0727 Pediococcus pentosaceus ATCC 25745 cell division protein FtsI YP_804230.1 766682 D 278197 CDS YP_804231.1 116492496 4418088 768871..769020 1 NC_008525.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 769020 rpmG 4418088 rpmG Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L33 YP_804231.1 768871 D 278197 CDS YP_804232.1 116492497 4418089 769102..769665 1 NC_008525.1 5-formyltetrahydrofolate cyclo-ligase 769665 4418089 PEPE_0729 Pediococcus pentosaceus ATCC 25745 5-formyltetrahydrofolate cyclo-ligase YP_804232.1 769102 D 278197 CDS YP_804233.1 116492498 4418090 769695..770384 1 NC_008525.1 membrane-associated serine protease 770384 4418090 PEPE_0730 Pediococcus pentosaceus ATCC 25745 membrane-associated serine protease YP_804233.1 769695 D 278197 CDS YP_804234.1 116492499 4418091 770417..770629 1 NC_008525.1 hypothetical protein 770629 4418091 PEPE_0731 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804234.1 770417 D 278197 CDS YP_804235.1 116492500 4418092 770647..771609 1 NC_008525.1 glucokinase 771609 4418092 PEPE_0732 Pediococcus pentosaceus ATCC 25745 glucokinase YP_804235.1 770647 D 278197 CDS YP_804236.1 116492501 4418093 771641..772060 1 NC_008525.1 rhodanese-related sulfurtransferase 772060 4418093 PEPE_0733 Pediococcus pentosaceus ATCC 25745 rhodanese-related sulfurtransferase YP_804236.1 771641 D 278197 CDS YP_804237.1 116492502 4418094 complement(772114..772290) 1 NC_008525.1 hypothetical protein 772290 4418094 PEPE_0734 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804237.1 772114 R 278197 CDS YP_804238.1 116492503 4418095 772373..773107 1 NC_008525.1 glycerophosphoryl diester phosphodiesterase 773107 4418095 PEPE_0735 Pediococcus pentosaceus ATCC 25745 glycerophosphoryl diester phosphodiesterase YP_804238.1 772373 D 278197 CDS YP_804239.1 116492504 4418061 773109..774041 1 NC_008525.1 tRNA delta(2)-isopentenylpyrophosphate transferase 774041 4418061 PEPE_0736 Pediococcus pentosaceus ATCC 25745 tRNA delta(2)-isopentenylpyrophosphate transferase YP_804239.1 773109 D 278197 CDS YP_804240.1 116492505 4418062 774025..775281 1 NC_008525.1 cystathionine beta-lyase family protein 775281 4418062 PEPE_0737 Pediococcus pentosaceus ATCC 25745 cystathionine beta-lyase family protein YP_804240.1 774025 D 278197 CDS YP_804241.1 116492506 4418063 775362..775727 1 NC_008525.1 glutamine synthetase 775727 4418063 PEPE_0738 Pediococcus pentosaceus ATCC 25745 glutamine synthetase YP_804241.1 775362 D 278197 CDS YP_804242.1 116492507 4418064 775762..777102 1 NC_008525.1 L-glutamine synthetase 777102 4418064 PEPE_0739 Pediococcus pentosaceus ATCC 25745 L-glutamine synthetase YP_804242.1 775762 D 278197 CDS YP_804243.1 116492508 4418065 777251..778126 1 NC_008525.1 hypothetical protein 778126 4418065 PEPE_0740 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804243.1 777251 D 278197 CDS YP_804244.1 116492509 4418066 778119..779036 1 NC_008525.1 hypothetical protein 779036 4418066 PEPE_0741 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804244.1 778119 D 278197 CDS YP_804245.1 116492510 4418067 779046..779585 1 NC_008525.1 dUTPase 779585 4418067 PEPE_0742 Pediococcus pentosaceus ATCC 25745 dUTPase YP_804245.1 779046 D 278197 CDS YP_804246.1 116492511 4418068 779890..780117 1 NC_008525.1 hypothetical protein 780117 4418068 PEPE_0743 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804246.1 779890 D 278197 CDS YP_804247.1 116492512 4418069 complement(780257..780460) 1 NC_008525.1 hypothetical protein 780460 4418069 PEPE_0744 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804247.1 780257 R 278197 CDS YP_804248.1 116492513 4418070 complement(780798..781937) 1 NC_008525.1 integrase 781937 4418070 PEPE_0745 Pediococcus pentosaceus ATCC 25745 integrase YP_804248.1 780798 R 278197 CDS YP_804249.1 116492514 4418071 complement(782084..782488) 1 NC_008525.1 hypothetical protein 782488 4418071 PEPE_0746 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804249.1 782084 R 278197 CDS YP_804250.1 116492515 4418072 complement(782546..782983) 1 NC_008525.1 hypothetical protein 782983 4418072 PEPE_0747 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804250.1 782546 R 278197 CDS YP_804251.1 116492516 4418073 complement(782987..783337) 1 NC_008525.1 XRE family transcriptional regulator 783337 4418073 PEPE_0748 Pediococcus pentosaceus ATCC 25745 XRE family transcriptional regulator YP_804251.1 782987 R 278197 CDS YP_804252.1 116492517 4418074 783594..783803 1 NC_008525.1 hypothetical protein 783803 4418074 PEPE_0749 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804252.1 783594 D 278197 CDS YP_804253.1 116492518 4418075 783817..783996 1 NC_008525.1 hypothetical protein 783996 4418075 PEPE_0750 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804253.1 783817 D 278197 CDS YP_804254.1 116492519 4418076 complement(783986..784126) 1 NC_008525.1 hypothetical protein 784126 4418076 PEPE_0751 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804254.1 783986 R 278197 CDS YP_804255.1 116492520 4418077 784187..784912 1 NC_008525.1 Phage anti-repressor protein 784912 4418077 PEPE_0752 Pediococcus pentosaceus ATCC 25745 Phage anti-repressor protein YP_804255.1 784187 D 278197 CDS YP_804256.1 116492521 4418078 784915..785259 1 NC_008525.1 hypothetical protein 785259 4418078 PEPE_0753 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804256.1 784915 D 278197 CDS YP_804257.1 116492522 4418044 785259..785357 1 NC_008525.1 hypothetical protein 785357 4418044 PEPE_0754 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804257.1 785259 D 278197 CDS YP_804258.1 116492523 4418045 785441..785548 1 NC_008525.1 hypothetical protein 785548 4418045 PEPE_0755 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804258.1 785441 D 278197 CDS YP_804259.1 116492524 4418046 785535..785996 1 NC_008525.1 hypothetical protein 785996 4418046 PEPE_0756 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804259.1 785535 D 278197 CDS YP_804260.1 116492525 4418047 785993..786649 1 NC_008525.1 hypothetical protein 786649 4418047 PEPE_0757 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804260.1 785993 D 278197 CDS YP_804261.1 116492526 4418048 786652..787050 1 NC_008525.1 single-stranded DNA-binding protein 787050 4418048 PEPE_0758 Pediococcus pentosaceus ATCC 25745 single-stranded DNA-binding protein YP_804261.1 786652 D 278197 CDS YP_804262.1 116492527 4418049 787088..787972 1 NC_008525.1 hypothetical protein 787972 4418049 PEPE_0759 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804262.1 787088 D 278197 CDS YP_804263.1 116492528 4418050 787956..789203 1 NC_008525.1 replicative DNA helicase 789203 4418050 PEPE_0760 Pediococcus pentosaceus ATCC 25745 replicative DNA helicase YP_804263.1 787956 D 278197 CDS YP_804264.1 116492529 4418051 789206..789622 1 NC_008525.1 hypothetical protein 789622 4418051 PEPE_0761 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804264.1 789206 D 278197 CDS YP_804265.1 116492530 4418052 789619..790038 1 NC_008525.1 Holliday junction resolvase 790038 4418052 PEPE_0762 Pediococcus pentosaceus ATCC 25745 Holliday junction resolvase YP_804265.1 789619 D 278197 CDS YP_804266.1 116492531 4418053 790025..790234 1 NC_008525.1 hypothetical protein 790234 4418053 PEPE_0763 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804266.1 790025 D 278197 CDS YP_804267.1 116492532 4418054 790247..790477 1 NC_008525.1 hypothetical protein 790477 4418054 PEPE_0764 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804267.1 790247 D 278197 CDS YP_804268.1 116492533 4418055 790491..790631 1 NC_008525.1 hypothetical protein 790631 4418055 PEPE_0765 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804268.1 790491 D 278197 CDS YP_804269.1 116492534 4418056 790646..791017 1 NC_008525.1 N-acetylmuramoyl-L-alanine amidase 791017 4418056 PEPE_0766 Pediococcus pentosaceus ATCC 25745 N-acetylmuramoyl-L-alanine amidase YP_804269.1 790646 D 278197 CDS YP_804270.1 116492535 4418057 791061..791525 1 NC_008525.1 hypothetical protein 791525 4418057 PEPE_0767 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804270.1 791061 D 278197 CDS YP_804271.1 116492536 4418058 791537..791830 1 NC_008525.1 hypothetical protein 791830 4418058 PEPE_0768 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804271.1 791537 D 278197 CDS YP_804272.1 116492537 4418059 791832..791996 1 NC_008525.1 hypothetical protein 791996 4418059 PEPE_0769 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804272.1 791832 D 278197 CDS YP_804273.1 116492538 4418060 791997..792563 1 NC_008525.1 hypothetical protein 792563 4418060 PEPE_0770 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804273.1 791997 D 278197 CDS YP_804274.1 116492539 4418026 792563..792751 1 NC_008525.1 hypothetical protein 792751 4418026 PEPE_0771 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804274.1 792563 D 278197 CDS YP_804275.1 116492540 4418027 792744..792911 1 NC_008525.1 hypothetical protein 792911 4418027 PEPE_0772 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804275.1 792744 D 278197 CDS YP_804276.1 116492541 4418028 793070..793366 1 NC_008525.1 hypothetical protein 793366 4418028 PEPE_0773 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804276.1 793070 D 278197 CDS YP_804277.1 116492542 4418029 793366..793707 1 NC_008525.1 hypothetical protein 793707 4418029 PEPE_0774 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804277.1 793366 D 278197 CDS YP_804278.1 116492543 4418030 793710..794129 1 NC_008525.1 hypothetical protein 794129 4418030 PEPE_0775 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804278.1 793710 D 278197 CDS YP_804279.1 116492544 4418031 794201..794374 1 NC_008525.1 hypothetical protein 794374 4418031 PEPE_0776 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804279.1 794201 D 278197 CDS YP_804280.1 116492545 4418032 794441..794899 1 NC_008525.1 hypothetical protein 794899 4418032 PEPE_0777 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804280.1 794441 D 278197 CDS YP_804281.1 116492546 4418033 795080..795322 1 NC_008525.1 hypothetical protein 795322 4418033 PEPE_0778 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804281.1 795080 D 278197 CDS YP_804282.1 116492547 4418034 795368..795508 1 NC_008525.1 hypothetical protein 795508 4418034 PEPE_0779 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804282.1 795368 D 278197 CDS YP_804283.1 116492548 4418035 795647..796228 1 NC_008525.1 hypothetical protein 796228 4418035 PEPE_0780 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804283.1 795647 D 278197 CDS YP_804284.1 116492549 4418036 796309..796806 1 NC_008525.1 hypothetical protein 796806 4418036 PEPE_0781 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804284.1 796309 D 278197 CDS YP_804285.1 116492550 4418037 796796..798067 1 NC_008525.1 Phage terminase large subunit 798067 4418037 PEPE_0782 Pediococcus pentosaceus ATCC 25745 Phage terminase large subunit YP_804285.1 796796 D 278197 CDS YP_804286.1 116492551 4418038 798075..799478 1 NC_008525.1 Phage portal protein, SPP1 Gp6-like 799478 4418038 PEPE_0783 Pediococcus pentosaceus ATCC 25745 Phage portal protein, SPP1 Gp6-like YP_804286.1 798075 D 278197 CDS YP_804287.1 116492552 4418039 799459..800424 1 NC_008525.1 Phage Mu protein F like protein 800424 4418039 PEPE_0784 Pediococcus pentosaceus ATCC 25745 Phage Mu protein F like protein YP_804287.1 799459 D 278197 CDS YP_804288.1 116492553 4418040 800427..800642 1 NC_008525.1 hypothetical protein 800642 4418040 PEPE_0785 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804288.1 800427 D 278197 CDS YP_804289.1 116492554 4418041 800752..801363 1 NC_008525.1 hypothetical protein 801363 4418041 PEPE_0786 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804289.1 800752 D 278197 CDS YP_804290.1 116492555 4418042 801378..802292 1 NC_008525.1 hypothetical protein 802292 4418042 PEPE_0787 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804290.1 801378 D 278197 CDS YP_804291.1 116492556 4418043 802343..802576 1 NC_008525.1 hypothetical protein 802576 4418043 PEPE_0788 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804291.1 802343 D 278197 CDS YP_804292.1 116492557 4418009 802588..802959 1 NC_008525.1 hypothetical protein 802959 4418009 PEPE_0789 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804292.1 802588 D 278197 CDS YP_804293.1 116492558 4418010 802964..803272 1 NC_008525.1 hypothetical protein 803272 4418010 PEPE_0790 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804293.1 802964 D 278197 CDS YP_804294.1 116492559 4418011 803265..803606 1 NC_008525.1 hypothetical protein 803606 4418011 PEPE_0791 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804294.1 803265 D 278197 CDS YP_804295.1 116492560 4418012 803631..804014 1 NC_008525.1 hypothetical protein 804014 4418012 PEPE_0792 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804295.1 803631 D 278197 CDS YP_804296.1 116492561 4418013 804026..804610 1 NC_008525.1 hypothetical protein 804610 4418013 PEPE_0793 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804296.1 804026 D 278197 CDS YP_804297.1 116492562 4418014 804687..804965 1 NC_008525.1 hypothetical protein 804965 4418014 PEPE_0794 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804297.1 804687 D 278197 CDS YP_804298.1 116492563 4418015 805105..805446 1 NC_008525.1 hypothetical protein 805446 4418015 PEPE_0795 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804298.1 805105 D 278197 CDS YP_804299.1 116492564 4418016 805593..805871 1 NC_008525.1 hypothetical protein 805871 4418016 PEPE_0796 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804299.1 805593 D 278197 CDS YP_804300.1 116492565 4418017 805855..808875 1 NC_008525.1 minor tail protein gp26-like 808875 4418017 PEPE_0797 Pediococcus pentosaceus ATCC 25745 minor tail protein gp26-like YP_804300.1 805855 D 278197 CDS YP_804301.1 116492566 4418018 808875..809639 1 NC_008525.1 hypothetical protein 809639 4418018 PEPE_0798 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804301.1 808875 D 278197 CDS YP_804302.1 116492567 4418019 809639..812599 1 NC_008525.1 enterolysin A. metallo peptidase. MEROPS family M23B 812599 4418019 PEPE_0799 Pediococcus pentosaceus ATCC 25745 enterolysin A. metallo peptidase. MEROPS family M23B YP_804302.1 809639 D 278197 CDS YP_804303.1 116492568 4418020 812583..812996 1 NC_008525.1 hypothetical protein 812996 4418020 PEPE_0800 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804303.1 812583 D 278197 CDS YP_804304.1 116492569 4418021 813000..814829 1 NC_008525.1 phosphodiesterase 814829 4418021 PEPE_0801 Pediococcus pentosaceus ATCC 25745 phosphodiesterase YP_804304.1 813000 D 278197 CDS YP_804305.1 116492570 4418022 814841..815581 1 NC_008525.1 hypothetical protein 815581 4418022 PEPE_0802 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804305.1 814841 D 278197 CDS YP_804306.1 116492571 4418023 815581..815922 1 NC_008525.1 hypothetical protein 815922 4418023 PEPE_0803 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804306.1 815581 D 278197 CDS YP_804307.1 116492572 4418024 815919..816074 1 NC_008525.1 hypothetical protein 816074 4418024 PEPE_0804 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804307.1 815919 D 278197 CDS YP_804308.1 116492573 4418025 816137..816739 1 NC_008525.1 hypothetical protein 816739 4418025 PEPE_0805 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804308.1 816137 D 278197 CDS YP_804309.1 116492574 4417992 816782..817183 1 NC_008525.1 Phage-related holin (lysis protein) 817183 4417992 PEPE_0806 Pediococcus pentosaceus ATCC 25745 Phage-related holin (lysis protein) YP_804309.1 816782 D 278197 CDS YP_804310.1 116492575 4417993 817167..818483 1 NC_008525.1 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 818483 4417993 PEPE_0807 Pediococcus pentosaceus ATCC 25745 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) YP_804310.1 817167 D 278197 CDS YP_804311.1 116492576 4417995 819017..819529 1 NC_008525.1 hypothetical protein 819529 4417995 PEPE_0809 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804311.1 819017 D 278197 CDS YP_804312.1 116492577 4417996 819863..820492 1 NC_008525.1 TetR family transcriptional regulator 820492 4417996 PEPE_0810 Pediococcus pentosaceus ATCC 25745 TetR family transcriptional regulator YP_804312.1 819863 D 278197 CDS YP_804313.1 116492578 4417997 820622..820930 1 NC_008525.1 50S ribosomal protein L21 820930 4417997 PEPE_0811 Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L21 YP_804313.1 820622 D 278197 CDS YP_804314.1 116492579 4417998 820952..821278 1 NC_008525.1 ribosomal protein 821278 4417998 PEPE_0812 Pediococcus pentosaceus ATCC 25745 ribosomal protein YP_804314.1 820952 D 278197 CDS YP_804315.1 116492580 4417999 821302..821589 1 NC_008525.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 821589 rpmA 4417999 rpmA Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L27 YP_804315.1 821302 D 278197 CDS YP_804316.1 116492581 4418000 821714..822277 1 NC_008525.1 translation elongation factor P (EF-P) 822277 4418000 PEPE_0814 Pediococcus pentosaceus ATCC 25745 translation elongation factor P (EF-P) YP_804316.1 821714 D 278197 CDS YP_804317.1 116492582 4418001 822295..822723 1 NC_008525.1 hypothetical protein 822723 4418001 PEPE_0815 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804317.1 822295 D 278197 CDS YP_804318.1 116492583 4418002 822723..823124 1 NC_008525.1 NusB antitermination factor 823124 4418002 PEPE_0816 Pediococcus pentosaceus ATCC 25745 NusB antitermination factor YP_804318.1 822723 D 278197 CDS YP_804319.1 116492584 4418003 823250..824101 1 NC_008525.1 methenyltetrahydrofolate cyclohydrolase 824101 4418003 PEPE_0817 Pediococcus pentosaceus ATCC 25745 methenyltetrahydrofolate cyclohydrolase YP_804319.1 823250 D 278197 CDS YP_804320.1 116492585 4418004 824102..825445 1 NC_008525.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 825445 xseA 4418004 xseA Pediococcus pentosaceus ATCC 25745 exodeoxyribonuclease VII large subunit YP_804320.1 824102 D 278197 CDS YP_804321.1 116492586 4418005 825445..825681 1 NC_008525.1 exodeoxyribonuclease VII small subunit 825681 4418005 PEPE_0819 Pediococcus pentosaceus ATCC 25745 exodeoxyribonuclease VII small subunit YP_804321.1 825445 D 278197 CDS YP_804322.1 116492587 4418006 825674..826564 1 NC_008525.1 farnesyl-diphosphate synthase 826564 4418006 PEPE_0820 Pediococcus pentosaceus ATCC 25745 farnesyl-diphosphate synthase YP_804322.1 825674 D 278197 CDS YP_804323.1 116492588 4418007 826578..827396 1 NC_008525.1 rRNA methylase 827396 4418007 PEPE_0821 Pediococcus pentosaceus ATCC 25745 rRNA methylase YP_804323.1 826578 D 278197 CDS YP_804324.1 116492589 4418008 827405..827863 1 NC_008525.1 ArgR family transcriptional regulator 827863 4418008 PEPE_0822 Pediococcus pentosaceus ATCC 25745 ArgR family transcriptional regulator YP_804324.1 827405 D 278197 CDS YP_804325.1 116492590 4417975 827875..829551 1 NC_008525.1 DNA repair ATPase 829551 4417975 PEPE_0823 Pediococcus pentosaceus ATCC 25745 DNA repair ATPase YP_804325.1 827875 D 278197 CDS YP_804326.1 116492591 4417976 complement(829623..829958) 1 NC_008525.1 hypothetical protein 829958 4417976 PEPE_0824 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804326.1 829623 R 278197 CDS YP_804327.1 116492592 4417977 830254..830868 1 NC_008525.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 830868 gmk 4417977 gmk Pediococcus pentosaceus ATCC 25745 guanylate kinase YP_804327.1 830254 D 278197 CDS YP_804328.1 116492593 4417978 830870..831079 1 NC_008525.1 DNA-directed RNA polymerase, subunit K/omega 831079 4417978 PEPE_0826 Pediococcus pentosaceus ATCC 25745 DNA-directed RNA polymerase, subunit K/omega YP_804328.1 830870 D 278197 CDS YP_804329.1 116492594 4417979 831191..832384 1 NC_008525.1 phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase 832384 4417979 PEPE_0827 Pediococcus pentosaceus ATCC 25745 phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase YP_804329.1 831191 D 278197 CDS YP_804330.1 116492595 4417980 832399..834819 1 NC_008525.1 replication restart DNA helicase PriA 834819 4417980 PEPE_0828 Pediococcus pentosaceus ATCC 25745 replication restart DNA helicase PriA YP_804330.1 832399 D 278197 CDS YP_804331.1 116492596 4417981 834842..835804 1 NC_008525.1 methionyl-tRNA formyltransferase 835804 4417981 PEPE_0829 Pediococcus pentosaceus ATCC 25745 methionyl-tRNA formyltransferase YP_804331.1 834842 D 278197 CDS YP_804332.1 116492597 4417982 835788..837122 1 NC_008525.1 tRNA and rRNA cytosine-C5-methylase 837122 4417982 PEPE_0830 Pediococcus pentosaceus ATCC 25745 tRNA and rRNA cytosine-C5-methylase YP_804332.1 835788 D 278197 CDS YP_804333.1 116492598 4417983 837131..837877 1 NC_008525.1 Serine/threonine protein phosphatase 837877 4417983 PEPE_0831 Pediococcus pentosaceus ATCC 25745 Serine/threonine protein phosphatase YP_804333.1 837131 D 278197 CDS YP_804334.1 116492599 4417984 837874..839397 1 NC_008525.1 serine/threonine kinase protein 839397 4417984 PEPE_0832 Pediococcus pentosaceus ATCC 25745 serine/threonine kinase protein YP_804334.1 837874 D 278197 CDS YP_804335.1 116492600 4417985 839408..840337 1 NC_008525.1 GTPase 840337 4417985 PEPE_0833 Pediococcus pentosaceus ATCC 25745 GTPase YP_804335.1 839408 D 278197 CDS YP_804336.1 116492601 4417986 840334..840981 1 NC_008525.1 ribulose-5-phosphate 3-epimerase 840981 4417986 PEPE_0834 Pediococcus pentosaceus ATCC 25745 ribulose-5-phosphate 3-epimerase YP_804336.1 840334 D 278197 CDS YP_804337.1 116492602 4417987 840981..841622 1 NC_008525.1 thiamine pyrophosphokinase 841622 4417987 PEPE_0835 Pediococcus pentosaceus ATCC 25745 thiamine pyrophosphokinase YP_804337.1 840981 D 278197 CDS YP_804338.1 116492603 4417988 complement(841666..841851) 1 NC_008525.1 required for 70S ribosome assembly; 50S ribosomal protein L28 841851 rpmB 4417988 rpmB Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L28 YP_804338.1 841666 R 278197 CDS YP_804339.1 116492604 4417989 842151..842513 1 NC_008525.1 hypothetical protein 842513 4417989 PEPE_0837 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804339.1 842151 D 278197 CDS YP_804340.1 116492605 4417990 842541..844229 1 NC_008525.1 dihydroxyacetone kinase-like protein 844229 4417990 PEPE_0838 Pediococcus pentosaceus ATCC 25745 dihydroxyacetone kinase-like protein YP_804340.1 842541 D 278197 CDS YP_804341.1 116492606 4417991 844280..846307 1 NC_008525.1 ATP-dependent DNA helicase RecG 846307 4417991 PEPE_0839 Pediococcus pentosaceus ATCC 25745 ATP-dependent DNA helicase RecG YP_804341.1 844280 D 278197 CDS YP_804342.1 116492607 4417957 846324..847367 1 NC_008525.1 phosphate:acyl-[acyl carrier protein] acyltransferase 847367 4417957 PEPE_0840 Pediococcus pentosaceus ATCC 25745 phosphate:acyl-[acyl carrier protein] acyltransferase YP_804342.1 846324 D 278197 CDS YP_804343.1 116492608 4417958 847406..847648 1 NC_008525.1 Acyl carrier protein 847648 4417958 PEPE_0841 Pediococcus pentosaceus ATCC 25745 Acyl carrier protein YP_804343.1 847406 D 278197 CDS YP_804344.1 116492609 4417959 847745..848443 1 NC_008525.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 848443 rnc 4417959 rnc Pediococcus pentosaceus ATCC 25745 ribonuclease III YP_804344.1 847745 D 278197 CDS YP_804345.1 116492610 4417960 848453..851983 1 NC_008525.1 condensin subunit Smc 851983 4417960 PEPE_0843 Pediococcus pentosaceus ATCC 25745 condensin subunit Smc YP_804345.1 848453 D 278197 CDS YP_804346.1 116492611 4417961 852001..853221 1 NC_008525.1 signal recognition particle-docking protein FtsY 853221 4417961 PEPE_0844 Pediococcus pentosaceus ATCC 25745 signal recognition particle-docking protein FtsY YP_804346.1 852001 D 278197 CDS YP_804347.1 116492612 4417962 853227..853568 1 NC_008525.1 hypothetical protein 853568 4417962 PEPE_0845 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804347.1 853227 D 278197 CDS YP_804348.1 116492613 4417963 853586..855016 1 NC_008525.1 signal recognition particle subunit FFH/SRP54 (srp54) 855016 4417963 PEPE_0846 Pediococcus pentosaceus ATCC 25745 signal recognition particle subunit FFH/SRP54 (srp54) YP_804348.1 853586 D 278197 CDS YP_804349.1 116492614 4417964 855375..855647 1 NC_008525.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 855647 rpsP 4417964 rpsP Pediococcus pentosaceus ATCC 25745 30S ribosomal protein S16 YP_804349.1 855375 D 278197 CDS YP_804350.1 116492615 4417965 855722..856237 1 NC_008525.1 16S rRNA processing protein RimM 856237 4417965 PEPE_0848 Pediococcus pentosaceus ATCC 25745 16S rRNA processing protein RimM YP_804350.1 855722 D 278197 CDS YP_804351.1 116492616 4417966 856237..856974 1 NC_008525.1 tRNA (Guanine37-N1) methyltransferase 856974 4417966 PEPE_0849 Pediococcus pentosaceus ATCC 25745 tRNA (Guanine37-N1) methyltransferase YP_804351.1 856237 D 278197 CDS YP_804352.1 116492617 4417967 857117..857476 1 NC_008525.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 857476 rplS 4417967 rplS Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L19 YP_804352.1 857117 D 278197 CDS YP_804353.1 116492618 4417968 857707..857778 1 NC_008525.1 hypothetical protein 857778 4417968 PEPE_0851 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804353.1 857707 D 278197 CDS YP_804354.1 116492619 4417970 complement(858262..858594) 1 NC_008525.1 hypothetical protein 858594 4417970 PEPE_0853 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804354.1 858262 R 278197 CDS YP_804355.1 116492620 4417971 859008..859457 1 NC_008525.1 (3R)-hydroxymyristoyl-ACP dehydratase 859457 4417971 PEPE_0854 Pediococcus pentosaceus ATCC 25745 (3R)-hydroxymyristoyl-ACP dehydratase YP_804355.1 859008 D 278197 CDS YP_804356.1 116492621 4417972 859471..860430 1 NC_008525.1 3-oxoacyl-ACP synthase 860430 4417972 PEPE_0855 Pediococcus pentosaceus ATCC 25745 3-oxoacyl-ACP synthase YP_804356.1 859471 D 278197 CDS YP_804357.1 116492622 4417973 860469..860708 1 NC_008525.1 Acyl carrier protein 860708 4417973 PEPE_0856 Pediococcus pentosaceus ATCC 25745 Acyl carrier protein YP_804357.1 860469 D 278197 CDS YP_804358.1 116492623 4417974 860726..861658 1 NC_008525.1 ACP S-malonyltransferase 861658 4417974 PEPE_0857 Pediococcus pentosaceus ATCC 25745 ACP S-malonyltransferase YP_804358.1 860726 D 278197 CDS YP_804359.1 116492624 4418164 861659..862387 1 NC_008525.1 3-oxoacyl-ACP reductase 862387 4418164 PEPE_0858 Pediococcus pentosaceus ATCC 25745 3-oxoacyl-ACP reductase YP_804359.1 861659 D 278197 CDS YP_804360.1 116492625 4418165 862406..863632 1 NC_008525.1 3-oxoacyl-ACP synthase 863632 4418165 PEPE_0859 Pediococcus pentosaceus ATCC 25745 3-oxoacyl-ACP synthase YP_804360.1 862406 D 278197 CDS YP_804361.1 116492626 4418166 863635..864075 1 NC_008525.1 biotin carboxyl carrier protein 864075 4418166 PEPE_0860 Pediococcus pentosaceus ATCC 25745 biotin carboxyl carrier protein YP_804361.1 863635 D 278197 CDS YP_804362.1 116492627 4418167 864075..864488 1 NC_008525.1 (3R)-hydroxymyristoyl-ACP dehydratase 864488 4418167 PEPE_0861 Pediococcus pentosaceus ATCC 25745 (3R)-hydroxymyristoyl-ACP dehydratase YP_804362.1 864075 D 278197 CDS YP_804363.1 116492628 4418168 864506..865873 1 NC_008525.1 biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 865873 4418168 PEPE_0862 Pediococcus pentosaceus ATCC 25745 biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha YP_804363.1 864506 D 278197 CDS YP_804364.1 116492629 4418169 865863..866693 1 NC_008525.1 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 866693 4418169 PEPE_0863 Pediococcus pentosaceus ATCC 25745 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha YP_804364.1 865863 D 278197 CDS YP_804365.1 116492630 4418170 866706..867473 1 NC_008525.1 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 867473 4418170 PEPE_0864 Pediococcus pentosaceus ATCC 25745 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha YP_804365.1 866706 D 278197 CDS YP_804366.1 116492631 4418171 867490..868248 1 NC_008525.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 868248 4418171 PEPE_0865 Pediococcus pentosaceus ATCC 25745 enoyl-(acyl carrier protein) reductase YP_804366.1 867490 D 278197 CDS YP_804367.1 116492632 4418172 868404..868478 1 NC_008525.1 hypothetical protein 868478 4418172 PEPE_0866 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804367.1 868404 D 278197 CDS YP_804368.1 116492633 4418173 868600..869976 1 NC_008525.1 amino acid transporter 869976 4418173 PEPE_0867 Pediococcus pentosaceus ATCC 25745 amino acid transporter YP_804368.1 868600 D 278197 CDS YP_804369.1 116492634 4418174 870137..871303 1 NC_008525.1 hydroxymethylglutaryl-CoA synthase 871303 4418174 PEPE_0868 Pediococcus pentosaceus ATCC 25745 hydroxymethylglutaryl-CoA synthase YP_804369.1 870137 D 278197 CDS YP_804370.1 116492635 4418175 complement(871343..871942) 1 NC_008525.1 hypothetical protein 871942 4418175 PEPE_0869 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804370.1 871343 R 278197 CDS YP_804371.1 116492636 4418176 complement(872021..872650) 1 NC_008525.1 XRE family transcriptional regulator 872650 4418176 PEPE_0870 Pediococcus pentosaceus ATCC 25745 XRE family transcriptional regulator YP_804371.1 872021 R 278197 CDS YP_804372.1 116492637 4418177 872784..873032 1 NC_008525.1 hypothetical protein 873032 4418177 PEPE_0871 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804372.1 872784 D 278197 CDS YP_804373.1 116492638 4418178 873103..873324 1 NC_008525.1 hypothetical protein 873324 4418178 PEPE_0872 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804373.1 873103 D 278197 CDS YP_804374.1 116492639 4418179 complement(873336..873878) 1 NC_008525.1 1-acyl-sn-glycerol-3-phosphate acyltransferase 873878 4418179 PEPE_0873 Pediococcus pentosaceus ATCC 25745 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_804374.1 873336 R 278197 CDS YP_804375.1 116492640 4418180 874055..874810 1 NC_008525.1 O-methyltransferase 874810 4418180 PEPE_0874 Pediococcus pentosaceus ATCC 25745 O-methyltransferase YP_804375.1 874055 D 278197 CDS YP_804376.1 116492641 4417835 874791..875078 1 NC_008525.1 URI-like endonuclease 875078 4417835 PEPE_0875 Pediococcus pentosaceus ATCC 25745 URI-like endonuclease YP_804376.1 874791 D 278197 CDS YP_804377.1 116492642 4417836 875199..876194 1 NC_008525.1 D-lactate dehydrogenase, LdhA 876194 4417836 PEPE_0876 Pediococcus pentosaceus ATCC 25745 D-lactate dehydrogenase, LdhA YP_804377.1 875199 D 278197 CDS YP_804378.1 116492643 4417837 876346..877128 1 NC_008525.1 30S ribosomal protein S2 877128 4417837 PEPE_0877 Pediococcus pentosaceus ATCC 25745 30S ribosomal protein S2 YP_804378.1 876346 D 278197 CDS YP_804379.1 116492644 4417838 877244..878122 1 NC_008525.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 878122 tsf 4417838 tsf Pediococcus pentosaceus ATCC 25745 elongation factor Ts YP_804379.1 877244 D 278197 CDS YP_804380.1 116492645 4417839 878276..879001 1 NC_008525.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 879001 pyrH 4417839 pyrH Pediococcus pentosaceus ATCC 25745 uridylate kinase YP_804380.1 878276 D 278197 CDS YP_804381.1 116492646 4417840 879001..879561 1 NC_008525.1 ribosome recycling factor 879561 4417840 PEPE_0880 Pediococcus pentosaceus ATCC 25745 ribosome recycling factor YP_804381.1 879001 D 278197 CDS YP_804382.1 116492647 4417841 879819..880568 1 NC_008525.1 undecaprenyl pyrophosphate synthetase 880568 4417841 PEPE_0881 Pediococcus pentosaceus ATCC 25745 undecaprenyl pyrophosphate synthetase YP_804382.1 879819 D 278197 CDS YP_804383.1 116492648 4417842 880537..881364 1 NC_008525.1 CDP-diglyceride synthetase 881364 4417842 PEPE_0882 Pediococcus pentosaceus ATCC 25745 CDP-diglyceride synthetase YP_804383.1 880537 D 278197 CDS YP_804384.1 116492649 4417843 881388..882650 1 NC_008525.1 peptidase RseP 882650 4417843 PEPE_0883 Pediococcus pentosaceus ATCC 25745 peptidase RseP YP_804384.1 881388 D 278197 CDS YP_804385.1 116492650 4417844 882678..884393 1 NC_008525.1 prolyl-tRNA synthetase 884393 4417844 PEPE_0884 Pediococcus pentosaceus ATCC 25745 prolyl-tRNA synthetase YP_804385.1 882678 D 278197 CDS YP_804386.1 116492651 4417845 884487..888800 1 NC_008525.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 888800 polC 4417845 polC Pediococcus pentosaceus ATCC 25745 DNA polymerase III PolC YP_804386.1 884487 D 278197 CDS YP_804387.1 116492652 4417846 888920..889396 1 NC_008525.1 hypothetical protein 889396 4417846 PEPE_0886 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804387.1 888920 D 278197 CDS YP_804388.1 116492653 4417847 889410..890498 1 NC_008525.1 transcription elongation factor 890498 4417847 PEPE_0887 Pediococcus pentosaceus ATCC 25745 transcription elongation factor YP_804388.1 889410 D 278197 CDS YP_804389.1 116492654 4417848 890520..890813 1 NC_008525.1 nucleic-acid-binding protein implicated in transcription termination 890813 4417848 PEPE_0888 Pediococcus pentosaceus ATCC 25745 nucleic-acid-binding protein implicated in transcription termination YP_804389.1 890520 D 278197 CDS YP_804390.1 116492655 4417849 890814..891116 1 NC_008525.1 50S ribosomal protein L7AE 891116 4417849 PEPE_0889 Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L7AE YP_804390.1 890814 D 278197 CDS YP_804391.1 116492656 4417850 891129..893885 1 NC_008525.1 IF-2; GTPase; Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 893885 infB 4417850 infB Pediococcus pentosaceus ATCC 25745 translation initiation factor IF-2 YP_804391.1 891129 D 278197 CDS YP_804392.1 116492657 4417851 893902..894252 1 NC_008525.1 ribosome-binding factor A 894252 4417851 PEPE_0891 Pediococcus pentosaceus ATCC 25745 ribosome-binding factor A YP_804392.1 893902 D 278197 CDS YP_804393.1 116492658 4417852 894391..895290 1 NC_008525.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 895290 truB 4417852 truB Pediococcus pentosaceus ATCC 25745 tRNA pseudouridine synthase B YP_804393.1 894391 D 278197 CDS YP_804394.1 116492659 4417871 895294..896238 1 NC_008525.1 FAD synthase 896238 4417871 PEPE_0893 Pediococcus pentosaceus ATCC 25745 FAD synthase YP_804394.1 895294 D 278197 CDS YP_804395.1 116492660 4417872 896346..897386 1 NC_008525.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 897386 hrcA 4417872 hrcA Pediococcus pentosaceus ATCC 25745 heat-inducible transcription repressor YP_804395.1 896346 D 278197 CDS YP_804396.1 116492661 4417873 897397..897969 1 NC_008525.1 molecular chaperone GrpE (heat shock protein) 897969 4417873 PEPE_0895 Pediococcus pentosaceus ATCC 25745 molecular chaperone GrpE (heat shock protein) YP_804396.1 897397 D 278197 CDS YP_804397.1 116492662 4417874 897995..899854 1 NC_008525.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 899854 dnaK 4417874 dnaK Pediococcus pentosaceus ATCC 25745 molecular chaperone DnaK YP_804397.1 897995 D 278197 CDS YP_804398.1 116492663 4417875 899951..901075 1 NC_008525.1 DnaJ-like molecular chaperone 901075 4417875 PEPE_0897 Pediococcus pentosaceus ATCC 25745 DnaJ-like molecular chaperone YP_804398.1 899951 D 278197 CDS YP_804399.1 116492664 4417876 complement(901181..901408) 1 NC_008525.1 hypothetical protein 901408 4417876 PEPE_0898 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804399.1 901181 R 278197 CDS YP_804400.1 116492665 4417877 complement(901537..902007) 1 NC_008525.1 tryptophan-rich sensory protein 902007 4417877 PEPE_0899 Pediococcus pentosaceus ATCC 25745 tryptophan-rich sensory protein YP_804400.1 901537 R 278197 CDS YP_804401.1 116492666 4417878 902087..902257 1 NC_008525.1 hypothetical protein 902257 4417878 PEPE_0900 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804401.1 902087 D 278197 CDS YP_804402.1 116492667 4417879 902244..902726 1 NC_008525.1 hypothetical protein 902726 4417879 PEPE_0901 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804402.1 902244 D 278197 CDS YP_804403.1 116492668 4417880 902743..902964 1 NC_008525.1 hypothetical protein 902964 4417880 PEPE_0902 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804403.1 902743 D 278197 CDS YP_804404.1 116492669 4417881 902965..903705 1 NC_008525.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 903705 fabG 4417881 fabG Pediococcus pentosaceus ATCC 25745 3-ketoacyl-ACP reductase YP_804404.1 902965 D 278197 CDS YP_804405.1 116492670 4417883 904542..904790 1 NC_008525.1 hypothetical protein 904790 4417883 PEPE_0905 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804405.1 904542 D 278197 CDS YP_804406.1 116492671 4417884 complement(904961..905761) 1 NC_008525.1 Mn-containing catalase 905761 4417884 PEPE_0906 Pediococcus pentosaceus ATCC 25745 Mn-containing catalase YP_804406.1 904961 R 278197 CDS YP_804407.1 116492672 4417885 complement(906262..906495) 1 NC_008525.1 hypothetical protein 906495 4417885 PEPE_0907 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804407.1 906262 R 278197 CDS YP_804408.1 116492673 4417886 complement(906574..906804) 1 NC_008525.1 hypothetical protein 906804 4417886 PEPE_0908 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804408.1 906574 R 278197 CDS YP_804409.1 116492674 4417887 906892..907017 1 NC_008525.1 hypothetical protein 907017 4417887 PEPE_0909 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804409.1 906892 D 278197 CDS YP_804410.1 116492675 4417939 complement(908120..909961) 1 NC_008525.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 909961 4417939 PEPE_0910 Pediococcus pentosaceus ATCC 25745 GTP-binding protein LepA YP_804410.1 908120 R 278197 CDS YP_804411.1 116492676 4417940 910188..910796 1 NC_008525.1 hypothetical protein 910796 4417940 PEPE_0911 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804411.1 910188 D 278197 CDS YP_804412.1 116492677 4417941 complement(910836..911897) 1 NC_008525.1 di- and tricarboxylate transporter 911897 4417941 PEPE_0912 Pediococcus pentosaceus ATCC 25745 di- and tricarboxylate transporter YP_804412.1 910836 R 278197 CDS YP_804413.1 116492678 4417942 complement(912025..913266) 1 NC_008525.1 dipeptidase 913266 4417942 PEPE_0913 Pediococcus pentosaceus ATCC 25745 dipeptidase YP_804413.1 912025 R 278197 CDS YP_804414.1 116492679 4417943 913572..913760 1 NC_008525.1 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown; 4-oxalocrotonate tautomerase 913760 4417943 PEPE_0914 Pediococcus pentosaceus ATCC 25745 4-oxalocrotonate tautomerase YP_804414.1 913572 D 278197 CDS YP_804415.1 116492680 4417944 complement(913808..914620) 1 NC_008525.1 HAD superfamily hydrolase 914620 4417944 PEPE_0915 Pediococcus pentosaceus ATCC 25745 HAD superfamily hydrolase YP_804415.1 913808 R 278197 CDS YP_804416.1 116492681 4417945 914798..916174 1 NC_008525.1 tRNA and rRNA cytosine-C5-methylase 916174 4417945 PEPE_0916 Pediococcus pentosaceus ATCC 25745 tRNA and rRNA cytosine-C5-methylase YP_804416.1 914798 D 278197 CDS YP_804417.1 116492682 4417946 916673..917626 1 NC_008525.1 Beta-lactamase class A 917626 4417946 PEPE_0917 Pediococcus pentosaceus ATCC 25745 Beta-lactamase class A YP_804417.1 916673 D 278197 CDS YP_804418.1 116492683 4417947 complement(917706..919139) 1 NC_008525.1 hypothetical protein 919139 4417947 PEPE_0918 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804418.1 917706 R 278197 CDS YP_804419.1 116492684 4417948 919439..920494 1 NC_008525.1 coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase-like protein 920494 4417948 PEPE_0919 Pediococcus pentosaceus ATCC 25745 coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase-like protein YP_804419.1 919439 D 278197 CDS YP_804420.1 116492685 4417949 920494..921171 1 NC_008525.1 dinucleotide-binding protein 921171 4417949 PEPE_0920 Pediococcus pentosaceus ATCC 25745 dinucleotide-binding protein YP_804420.1 920494 D 278197 CDS YP_804421.1 116492686 4417950 complement(921259..922038) 1 NC_008525.1 esterase/lipase 922038 4417950 PEPE_0921 Pediococcus pentosaceus ATCC 25745 esterase/lipase YP_804421.1 921259 R 278197 CDS YP_804422.1 116492687 4417951 922326..923435 1 NC_008525.1 L-lactate dehydrogenase (FMN-dependent) related alpha-hydroxy acid dehydrogenase 923435 4417951 PEPE_0922 Pediococcus pentosaceus ATCC 25745 L-lactate dehydrogenase (FMN-dependent) related alpha-hydroxy acid dehydrogenase YP_804422.1 922326 D 278197 CDS YP_804423.1 116492688 4417952 923588..924139 1 NC_008525.1 integral membrane protein 924139 4417952 PEPE_0923 Pediococcus pentosaceus ATCC 25745 integral membrane protein YP_804423.1 923588 D 278197 CDS YP_804424.1 116492689 4417953 complement(924317..925300) 1 NC_008525.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase 925300 4417953 PEPE_0924 Pediococcus pentosaceus ATCC 25745 isopentenyl pyrophosphate isomerase YP_804424.1 924317 R 278197 CDS YP_804425.1 116492690 4417954 complement(925309..926391) 1 NC_008525.1 phosphomevalonate kinase 926391 4417954 PEPE_0925 Pediococcus pentosaceus ATCC 25745 phosphomevalonate kinase YP_804425.1 925309 R 278197 CDS YP_804426.1 116492691 4417955 complement(926405..927388) 1 NC_008525.1 diphosphomevalonate decarboxylase 927388 4417955 PEPE_0926 Pediococcus pentosaceus ATCC 25745 diphosphomevalonate decarboxylase YP_804426.1 926405 R 278197 CDS YP_804427.1 116492692 4417956 complement(927407..928327) 1 NC_008525.1 mevalonate kinase 928327 4417956 PEPE_0927 Pediococcus pentosaceus ATCC 25745 mevalonate kinase YP_804427.1 927407 R 278197 CDS YP_804428.1 116492693 4417740 928444..931233 1 NC_008525.1 Rad3-related DNA helicase 931233 4417740 PEPE_0928 Pediococcus pentosaceus ATCC 25745 Rad3-related DNA helicase YP_804428.1 928444 D 278197 CDS YP_804429.1 116492694 4417741 931294..931785 1 NC_008525.1 hypothetical protein 931785 4417741 PEPE_0929 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804429.1 931294 D 278197 CDS YP_804430.1 116492695 4417742 931798..932502 1 NC_008525.1 DNA replication protein DnaD 932502 4417742 PEPE_0930 Pediococcus pentosaceus ATCC 25745 DNA replication protein DnaD YP_804430.1 931798 D 278197 CDS YP_804431.1 116492696 4417743 complement(932540..934849) 1 NC_008525.1 membrane carboxypeptidase (penicillin-binding protein) 934849 4417743 PEPE_0931 Pediococcus pentosaceus ATCC 25745 membrane carboxypeptidase (penicillin-binding protein) YP_804431.1 932540 R 278197 CDS YP_804432.1 116492697 4417744 complement(934883..935488) 1 NC_008525.1 functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC; Holliday junction-specific endonuclease 935488 recU 4417744 recU Pediococcus pentosaceus ATCC 25745 Holliday junction-specific endonuclease YP_804432.1 934883 R 278197 CDS YP_804433.1 116492698 4417745 935625..936176 1 NC_008525.1 hypothetical protein 936176 4417745 PEPE_0933 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804433.1 935625 D 278197 CDS YP_804434.1 116492699 4417746 936252..936593 1 NC_008525.1 GpsB; guiding PBP1 shuttling; similar to DivIVA; cell division protein GpsB 936593 4417746 PEPE_0934 Pediococcus pentosaceus ATCC 25745 cell division protein GpsB YP_804434.1 936252 D 278197 CDS YP_804435.1 116492700 4417748 937075..938205 1 NC_008525.1 N6-adenine-specific DNA methylase 938205 4417748 PEPE_0936 Pediococcus pentosaceus ATCC 25745 N6-adenine-specific DNA methylase YP_804435.1 937075 D 278197 CDS YP_804436.1 116492701 4417749 938215..939309 1 NC_008525.1 glycine/D-amino acid oxidase (deaminating) 939309 4417749 PEPE_0937 Pediococcus pentosaceus ATCC 25745 glycine/D-amino acid oxidase (deaminating) YP_804436.1 938215 D 278197 CDS YP_804437.1 116492702 4417750 939323..939709 1 NC_008525.1 pore-forming protein 939709 4417750 PEPE_0938 Pediococcus pentosaceus ATCC 25745 pore-forming protein YP_804437.1 939323 D 278197 CDS YP_804438.1 116492703 4417751 939717..941378 1 NC_008525.1 formate-tetrahydrofolate ligase 941378 4417751 PEPE_0939 Pediococcus pentosaceus ATCC 25745 formate-tetrahydrofolate ligase YP_804438.1 939717 D 278197 CDS YP_804439.1 116492704 4417752 941392..941844 1 NC_008525.1 signal peptidase II 941844 4417752 PEPE_0940 Pediococcus pentosaceus ATCC 25745 signal peptidase II YP_804439.1 941392 D 278197 CDS YP_804440.1 116492705 4417753 941854..942756 1 NC_008525.1 ribosomal large subunit pseudouridine synthase D 942756 4417753 PEPE_0941 Pediococcus pentosaceus ATCC 25745 ribosomal large subunit pseudouridine synthase D YP_804440.1 941854 D 278197 CDS YP_804441.1 116492706 4417754 942917..943450 1 NC_008525.1 pyrimidine operon attenuation protein/uracil phosphoribosyltransferase 943450 4417754 PEPE_0942 Pediococcus pentosaceus ATCC 25745 pyrimidine operon attenuation protein/uracil phosphoribosyltransferase YP_804441.1 942917 D 278197 CDS YP_804442.1 116492707 4417755 943478..944557 1 NC_008525.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 944557 4417755 PEPE_0943 Pediococcus pentosaceus ATCC 25745 carbamoyl phosphate synthase small subunit YP_804442.1 943478 D 278197 CDS YP_804443.1 116492708 4417756 944559..947015 1 NC_008525.1 carbamoyl-phosphate synthase large subunit 947015 4417756 PEPE_0944 Pediococcus pentosaceus ATCC 25745 carbamoyl-phosphate synthase large subunit YP_804443.1 944559 D 278197 CDS YP_804444.1 116492709 4417757 complement(947073..948779) 1 NC_008525.1 fibronectin-binding protein 948779 4417757 PEPE_0945 Pediococcus pentosaceus ATCC 25745 fibronectin-binding protein YP_804444.1 947073 R 278197 CDS YP_804445.1 116492710 4417758 948925..949335 1 NC_008525.1 transcriptional regulator 949335 4417758 PEPE_0946 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_804445.1 948925 D 278197 CDS YP_804446.1 116492711 4417759 949422..950285 1 NC_008525.1 hypothetical protein 950285 4417759 PEPE_0947 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804446.1 949422 D 278197 CDS YP_804447.1 116492712 4417760 complement(950270..950632) 1 NC_008525.1 camphor resistance protein CrcB 950632 4417760 PEPE_0948 Pediococcus pentosaceus ATCC 25745 camphor resistance protein CrcB YP_804447.1 950270 R 278197 CDS YP_804448.1 116492713 4417762 951211..951567 1 NC_008525.1 hypothetical protein 951567 4417762 PEPE_0950 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804448.1 951211 D 278197 CDS YP_804449.1 116492714 4417763 complement(951916..952242) 1 NC_008525.1 membrane transporter 952242 4417763 PEPE_0951 Pediococcus pentosaceus ATCC 25745 membrane transporter YP_804449.1 951916 R 278197 CDS YP_804450.1 116492715 4417764 952766..954268 1 NC_008525.1 amino acid transporter 954268 4417764 PEPE_0952 Pediococcus pentosaceus ATCC 25745 amino acid transporter YP_804450.1 952766 D 278197 CDS YP_804451.1 116492716 4417765 complement(954317..954832) 1 NC_008525.1 peptide methionine sulfoxide reductase 954832 4417765 PEPE_0953 Pediococcus pentosaceus ATCC 25745 peptide methionine sulfoxide reductase YP_804451.1 954317 R 278197 CDS YP_804452.1 116492717 4417766 complement(954848..955291) 1 NC_008525.1 peptide methionine sulfoxide reductase domain-containing protein 955291 4417766 PEPE_0954 Pediococcus pentosaceus ATCC 25745 peptide methionine sulfoxide reductase domain-containing protein YP_804452.1 954848 R 278197 CDS YP_804453.1 116492718 4417767 complement(955377..956516) 1 NC_008525.1 glycerate kinase 956516 4417767 PEPE_0955 Pediococcus pentosaceus ATCC 25745 glycerate kinase YP_804453.1 955377 R 278197 CDS YP_804454.1 116492719 4417768 complement(956618..957550) 1 NC_008525.1 catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase 957550 4417768 PEPE_0956 Pediococcus pentosaceus ATCC 25745 putative manganese-dependent inorganic pyrophosphatase YP_804454.1 956618 R 278197 CDS YP_804455.1 116492720 4417769 complement(957566..958537) 1 NC_008525.1 transcriptional regulator 958537 4417769 PEPE_0957 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_804455.1 957566 R 278197 CDS YP_804456.1 116492721 4417770 complement(958636..961089) 1 NC_008525.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 961089 4417770 PEPE_0958 Pediococcus pentosaceus ATCC 25745 DNA topoisomerase IV subunit A YP_804456.1 958636 R 278197 CDS YP_804457.1 116492722 4417771 complement(961103..963142) 1 NC_008525.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 963142 4417771 PEPE_0959 Pediococcus pentosaceus ATCC 25745 DNA topoisomerase IV subunit B YP_804457.1 961103 R 278197 CDS YP_804458.1 116492723 4417772 963304..963912 1 NC_008525.1 acyl-phosphate glycerol-3-phosphate acyltransferase 963912 4417772 PEPE_0960 Pediococcus pentosaceus ATCC 25745 acyl-phosphate glycerol-3-phosphate acyltransferase YP_804458.1 963304 D 278197 CDS YP_804459.1 116492724 4417773 complement(963999..964880) 1 NC_008525.1 galactose mutarotase-like protein 964880 4417773 PEPE_0961 Pediococcus pentosaceus ATCC 25745 galactose mutarotase-like protein YP_804459.1 963999 R 278197 CDS YP_804460.1 116492725 4417774 complement(964898..966310) 1 NC_008525.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 966310 hslU 4417774 hslU Pediococcus pentosaceus ATCC 25745 ATP-dependent protease ATP-binding subunit HslU YP_804460.1 964898 R 278197 CDS YP_804461.1 116492726 4417775 complement(966314..966868) 1 NC_008525.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 966868 4417775 PEPE_0963 Pediococcus pentosaceus ATCC 25745 ATP-dependent protease peptidase subunit YP_804461.1 966314 R 278197 CDS YP_804462.1 116492727 4417776 complement(966887..967792) 1 NC_008525.1 tyrosine recombinase XerC subunit 967792 4417776 PEPE_0964 Pediococcus pentosaceus ATCC 25745 tyrosine recombinase XerC subunit YP_804462.1 966887 R 278197 CDS YP_804463.1 116492728 4417777 complement(967864..969936) 1 NC_008525.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 969936 4417777 PEPE_0965 Pediococcus pentosaceus ATCC 25745 DNA topoisomerase I YP_804463.1 967864 R 278197 CDS YP_804464.1 116492729 4417778 complement(970246..970905) 1 NC_008525.1 HAD family sugar phosphatase 970905 4417778 PEPE_0966 Pediococcus pentosaceus ATCC 25745 HAD family sugar phosphatase YP_804464.1 970246 R 278197 CDS YP_804465.1 116492730 4417779 complement(970921..973173) 1 NC_008525.1 maltose phosphorylase 973173 4417779 PEPE_0967 Pediococcus pentosaceus ATCC 25745 maltose phosphorylase YP_804465.1 970921 R 278197 CDS YP_804466.1 116492731 4417780 complement(973199..974542) 1 NC_008525.1 major facilitator superfamily permease 974542 4417780 PEPE_0968 Pediococcus pentosaceus ATCC 25745 major facilitator superfamily permease YP_804466.1 973199 R 278197 CDS YP_804467.1 116492732 4417781 complement(974686..975639) 1 NC_008525.1 LacI family transcription regulator 975639 4417781 PEPE_0969 Pediococcus pentosaceus ATCC 25745 LacI family transcription regulator YP_804467.1 974686 R 278197 CDS YP_804468.1 116492733 4417782 complement(975739..976599) 1 NC_008525.1 Rossmann fold nucleotide-binding protein for DNA uptake 976599 4417782 PEPE_0970 Pediococcus pentosaceus ATCC 25745 Rossmann fold nucleotide-binding protein for DNA uptake YP_804468.1 975739 R 278197 CDS YP_804469.1 116492734 4417783 complement(976640..977407) 1 NC_008525.1 ribonuclease HII 977407 4417783 PEPE_0971 Pediococcus pentosaceus ATCC 25745 ribonuclease HII YP_804469.1 976640 R 278197 CDS YP_804470.1 116492735 4417784 complement(977394..978257) 1 NC_008525.1 GTP-binding protein YlqF 978257 4417784 PEPE_0972 Pediococcus pentosaceus ATCC 25745 GTP-binding protein YlqF YP_804470.1 977394 R 278197 CDS YP_804471.1 116492736 4417785 complement(979053..980387) 1 NC_008525.1 hypothetical protein 980387 4417785 PEPE_0973 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804471.1 979053 R 278197 CDS YP_804472.1 116492737 4417786 complement(980589..982619) 1 NC_008525.1 hypothetical protein 982619 4417786 PEPE_0974 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804472.1 980589 R 278197 CDS YP_804473.1 116492738 4417787 complement(983038..983364) 1 NC_008525.1 hypothetical protein 983364 4417787 PEPE_0975 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804473.1 983038 R 278197 CDS YP_804474.1 116492739 4417788 complement(983632..985746) 1 NC_008525.1 ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones 985746 4417788 PEPE_0976 Pediococcus pentosaceus ATCC 25745 ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones YP_804474.1 983632 R 278197 CDS YP_804475.1 116492740 4417789 complement(986030..988075) 1 NC_008525.1 hypothetical protein 988075 4417789 PEPE_0977 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804475.1 986030 R 278197 CDS YP_804476.1 116492741 4417790 complement(988062..988400) 1 NC_008525.1 hypothetical protein 988400 4417790 PEPE_0978 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804476.1 988062 R 278197 CDS YP_804477.1 116492742 4417651 complement(988402..989460) 1 NC_008525.1 cell surface protein 989460 4417651 PEPE_0979 Pediococcus pentosaceus ATCC 25745 cell surface protein YP_804477.1 988402 R 278197 CDS YP_804478.1 116492743 4417652 complement(989447..990100) 1 NC_008525.1 cell surface protein 990100 4417652 PEPE_0980 Pediococcus pentosaceus ATCC 25745 cell surface protein YP_804478.1 989447 R 278197 CDS YP_804479.1 116492744 4417653 complement(990256..991047) 1 NC_008525.1 hypothetical protein 991047 4417653 PEPE_0981 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804479.1 990256 R 278197 CDS YP_804480.1 116492745 4417654 complement(992277..992519) 1 NC_008525.1 hypothetical protein 992519 4417654 PEPE_0982 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804480.1 992277 R 278197 CDS YP_804481.1 116492746 4417655 complement(992637..993014) 1 NC_008525.1 hypothetical protein 993014 4417655 PEPE_0983 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804481.1 992637 R 278197 CDS YP_804482.1 116492747 4417656 complement(993024..993287) 1 NC_008525.1 hypothetical protein 993287 4417656 PEPE_0984 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804482.1 993024 R 278197 CDS YP_804483.1 116492748 4417657 complement(993287..994450) 1 NC_008525.1 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 994450 4417657 PEPE_0985 Pediococcus pentosaceus ATCC 25745 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) YP_804483.1 993287 R 278197 CDS YP_804484.1 116492749 4417658 complement(994462..994821) 1 NC_008525.1 hypothetical protein 994821 4417658 PEPE_0986 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804484.1 994462 R 278197 CDS YP_804485.1 116492750 4417659 complement(994855..995103) 1 NC_008525.1 hypothetical protein 995103 4417659 PEPE_0987 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804485.1 994855 R 278197 CDS YP_804486.1 116492751 4417660 complement(995116..995319) 1 NC_008525.1 hypothetical protein 995319 4417660 PEPE_0988 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804486.1 995116 R 278197 CDS YP_804487.1 116492752 4417661 complement(995312..995539) 1 NC_008525.1 hypothetical protein 995539 4417661 PEPE_0989 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804487.1 995312 R 278197 CDS YP_804488.1 116492753 4417662 complement(995532..998720) 1 NC_008525.1 hypothetical protein 998720 4417662 PEPE_0990 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804488.1 995532 R 278197 CDS YP_804489.1 116492754 4417663 complement(998737..1001127) 1 NC_008525.1 hypothetical protein 1001127 4417663 PEPE_0991 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804489.1 998737 R 278197 CDS YP_804490.1 116492755 4417664 complement(1001148..1002914) 1 NC_008525.1 hypothetical protein 1002914 4417664 PEPE_0992 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804490.1 1001148 R 278197 CDS YP_804491.1 116492756 4417665 complement(1002992..1007752) 1 NC_008525.1 SLT domain-containing protein 1007752 4417665 PEPE_0993 Pediococcus pentosaceus ATCC 25745 SLT domain-containing protein YP_804491.1 1002992 R 278197 CDS YP_804492.1 116492757 4417666 complement(1007784..1007969) 1 NC_008525.1 hypothetical protein 1007969 4417666 PEPE_0994 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804492.1 1007784 R 278197 CDS YP_804493.1 116492758 4417667 complement(1008014..1008388) 1 NC_008525.1 hypothetical protein 1008388 4417667 PEPE_0995 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804493.1 1008014 R 278197 CDS YP_804494.1 116492759 4417668 complement(1008462..1009115) 1 NC_008525.1 hypothetical protein 1009115 4417668 PEPE_0996 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804494.1 1008462 R 278197 CDS YP_804495.1 116492760 4417634 complement(1009131..1009511) 1 NC_008525.1 hypothetical protein 1009511 4417634 PEPE_0997 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804495.1 1009131 R 278197 CDS YP_804496.1 116492761 4417635 complement(1009511..1009918) 1 NC_008525.1 hypothetical protein 1009918 4417635 PEPE_0998 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804496.1 1009511 R 278197 CDS YP_804497.1 116492762 4417636 complement(1009921..1010268) 1 NC_008525.1 hypothetical protein 1010268 4417636 PEPE_0999 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804497.1 1009921 R 278197 CDS YP_804498.1 116492763 4417637 complement(1010258..1010590) 1 NC_008525.1 hypothetical protein 1010590 4417637 PEPE_1000 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804498.1 1010258 R 278197 CDS YP_804499.1 116492764 4417638 complement(1010664..1011896) 1 NC_008525.1 phage phi-C31 gp36 major capsid-like protein 1011896 4417638 PEPE_1001 Pediococcus pentosaceus ATCC 25745 phage phi-C31 gp36 major capsid-like protein YP_804499.1 1010664 R 278197 CDS YP_804500.1 116492765 4417639 complement(1011896..1012651) 1 NC_008525.1 protease subunit of ATP-dependent Clp protease 1012651 4417639 PEPE_1002 Pediococcus pentosaceus ATCC 25745 protease subunit of ATP-dependent Clp protease YP_804500.1 1011896 R 278197 CDS YP_804501.1 116492766 4417640 complement(1012629..1013792) 1 NC_008525.1 hypothetical protein 1013792 4417640 PEPE_1003 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804501.1 1012629 R 278197 CDS YP_804502.1 116492767 4417641 complement(1013795..1013989) 1 NC_008525.1 hypothetical protein 1013989 4417641 PEPE_1004 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804502.1 1013795 R 278197 CDS YP_804503.1 116492768 4417642 complement(1013979..1015877) 1 NC_008525.1 Phage terminase-like protein, large subunit 1015877 4417642 PEPE_1005 Pediococcus pentosaceus ATCC 25745 Phage terminase-like protein, large subunit YP_804503.1 1013979 R 278197 CDS YP_804504.1 116492769 4417643 complement(1015880..1016338) 1 NC_008525.1 Phage terminase, small subunit 1016338 4417643 PEPE_1006 Pediococcus pentosaceus ATCC 25745 Phage terminase, small subunit YP_804504.1 1015880 R 278197 CDS YP_804505.1 116492770 4417644 complement(1016535..1017044) 1 NC_008525.1 restriction endonuclease 1017044 4417644 PEPE_1007 Pediococcus pentosaceus ATCC 25745 restriction endonuclease YP_804505.1 1016535 R 278197 CDS YP_804506.1 116492771 4417645 complement(1017582..1018013) 1 NC_008525.1 hypothetical protein 1018013 4417645 PEPE_1008 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804506.1 1017582 R 278197 CDS YP_804507.1 116492772 4417646 complement(1018004..1018396) 1 NC_008525.1 hypothetical protein 1018396 4417646 PEPE_1009 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804507.1 1018004 R 278197 CDS YP_804508.1 116492773 4417647 complement(1018476..1018940) 1 NC_008525.1 hypothetical protein 1018940 4417647 PEPE_1010 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804508.1 1018476 R 278197 CDS YP_804509.1 116492774 4417648 complement(1018933..1018980) 1 NC_008525.1 hypothetical protein 1018980 4417648 PEPE_1011 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804509.1 1018933 R 278197 CDS YP_804510.1 116492775 4417649 complement(1018992..1019324) 1 NC_008525.1 hypothetical protein 1019324 4417649 PEPE_1012 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804510.1 1018992 R 278197 CDS YP_804511.1 116492776 4417650 complement(1019325..1019696) 1 NC_008525.1 hypothetical protein 1019696 4417650 PEPE_1013 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804511.1 1019325 R 278197 CDS YP_804512.1 116492777 4417686 complement(1019711..1019851) 1 NC_008525.1 hypothetical protein 1019851 4417686 PEPE_1014 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804512.1 1019711 R 278197 CDS YP_804513.1 116492778 4417687 complement(1019861..1020079) 1 NC_008525.1 hypothetical protein 1020079 4417687 PEPE_1015 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804513.1 1019861 R 278197 CDS YP_804514.1 116492779 4417688 complement(1020076..1020486) 1 NC_008525.1 Holliday junction resolvase 1020486 4417688 PEPE_1016 Pediococcus pentosaceus ATCC 25745 Holliday junction resolvase YP_804514.1 1020076 R 278197 CDS YP_804515.1 116492780 4417689 complement(1020487..1020603) 1 NC_008525.1 hypothetical protein 1020603 4417689 PEPE_1017 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804515.1 1020487 R 278197 CDS YP_804516.1 116492781 4417690 complement(1020603..1021421) 1 NC_008525.1 DNA replication protein 1021421 4417690 PEPE_1018 Pediococcus pentosaceus ATCC 25745 DNA replication protein YP_804516.1 1020603 R 278197 CDS YP_804517.1 116492782 4417691 complement(1021402..1022145) 1 NC_008525.1 hypothetical protein 1022145 4417691 PEPE_1019 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804517.1 1021402 R 278197 CDS YP_804518.1 116492783 4417692 complement(1022146..1022823) 1 NC_008525.1 hypothetical protein 1022823 4417692 PEPE_1020 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804518.1 1022146 R 278197 CDS YP_804519.1 116492784 4417693 complement(1022834..1023232) 1 NC_008525.1 single-stranded DNA-binding protein 1023232 4417693 PEPE_1021 Pediococcus pentosaceus ATCC 25745 single-stranded DNA-binding protein YP_804519.1 1022834 R 278197 CDS YP_804520.1 116492785 4417694 complement(1023235..1023891) 1 NC_008525.1 hypothetical protein 1023891 4417694 PEPE_1022 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804520.1 1023235 R 278197 CDS YP_804521.1 116492786 4417695 complement(1023888..1024349) 1 NC_008525.1 hypothetical protein 1024349 4417695 PEPE_1023 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804521.1 1023888 R 278197 CDS YP_804522.1 116492787 4417696 complement(1024342..1024443) 1 NC_008525.1 hypothetical protein 1024443 4417696 PEPE_1024 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804522.1 1024342 R 278197 CDS YP_804523.1 116492788 4417697 1024575..1024841 1 NC_008525.1 hypothetical protein 1024841 4417697 PEPE_1025 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804523.1 1024575 D 278197 CDS YP_804524.1 116492789 4417698 complement(1024798..1025055) 1 NC_008525.1 hypothetical protein 1025055 4417698 PEPE_1026 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804524.1 1024798 R 278197 CDS YP_804525.1 116492790 4417699 complement(1025055..1025153) 1 NC_008525.1 hypothetical protein 1025153 4417699 PEPE_1027 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804525.1 1025055 R 278197 CDS YP_804526.1 116492791 4417700 complement(1025153..1025362) 1 NC_008525.1 hypothetical protein 1025362 4417700 PEPE_1028 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804526.1 1025153 R 278197 CDS YP_804527.1 116492792 4417701 complement(1025365..1025451) 1 NC_008525.1 hypothetical protein 1025451 4417701 PEPE_1029 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804527.1 1025365 R 278197 CDS YP_804528.1 116492793 4417702 1025707..1025910 1 NC_008525.1 hypothetical protein 1025910 4417702 PEPE_1030 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804528.1 1025707 D 278197 CDS YP_804529.1 116492794 4417703 complement(1025935..1026135) 1 NC_008525.1 hypothetical protein 1026135 4417703 PEPE_1031 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804529.1 1025935 R 278197 CDS YP_804530.1 116492795 4417669 complement(1026181..1026984) 1 NC_008525.1 phage-encoded protein 1026984 4417669 PEPE_1032 Pediococcus pentosaceus ATCC 25745 phage-encoded protein YP_804530.1 1026181 R 278197 CDS YP_804531.1 116492796 4417670 complement(1027000..1027188) 1 NC_008525.1 hypothetical protein 1027188 4417670 PEPE_1033 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804531.1 1027000 R 278197 CDS YP_804532.1 116492797 4417671 1027454..1027801 1 NC_008525.1 XRE family transcriptional regulator 1027801 4417671 PEPE_1034 Pediococcus pentosaceus ATCC 25745 XRE family transcriptional regulator YP_804532.1 1027454 D 278197 CDS YP_804533.1 116492798 4417672 1027907..1028215 1 NC_008525.1 hypothetical protein 1028215 4417672 PEPE_1035 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804533.1 1027907 D 278197 CDS YP_804534.1 116492799 4417673 1028279..1029406 1 NC_008525.1 hypothetical protein 1029406 4417673 PEPE_1036 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804534.1 1028279 D 278197 CDS YP_804535.1 116492800 4417674 1029553..1029750 1 NC_008525.1 hypothetical protein 1029750 4417674 PEPE_1037 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804535.1 1029553 D 278197 CDS YP_804536.1 116492801 4417675 1029975..1031048 1 NC_008525.1 integrase 1031048 4417675 PEPE_1038 Pediococcus pentosaceus ATCC 25745 integrase YP_804536.1 1029975 D 278197 CDS YP_804537.1 116492802 4417676 complement(1031069..1031611) 1 NC_008525.1 transcription regulator 1031611 4417676 PEPE_1039 Pediococcus pentosaceus ATCC 25745 transcription regulator YP_804537.1 1031069 R 278197 CDS YP_804538.1 116492803 4417677 1031855..1032217 1 NC_008525.1 hypothetical protein 1032217 4417677 PEPE_1040 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804538.1 1031855 D 278197 CDS YP_804539.1 116492804 4417678 complement(1032326..1033168) 1 NC_008525.1 transcriptional regulator 1033168 4417678 PEPE_1041 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_804539.1 1032326 R 278197 CDS YP_804540.1 116492805 4417679 complement(1033293..1035272) 1 NC_008525.1 sucrose-specific PTS system IIBC component 1035272 4417679 PEPE_1042 Pediococcus pentosaceus ATCC 25745 sucrose-specific PTS system IIBC component YP_804540.1 1033293 R 278197 CDS YP_804541.1 116492806 4417680 complement(1035290..1036180) 1 NC_008525.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid-6-phosphate etherase 1036180 murQ 4417680 murQ Pediococcus pentosaceus ATCC 25745 N-acetylmuramic acid-6-phosphate etherase YP_804541.1 1035290 R 278197 CDS YP_804542.1 116492807 4417681 1036457..1038217 1 NC_008525.1 acyl esterase 1038217 4417681 PEPE_1044 Pediococcus pentosaceus ATCC 25745 acyl esterase YP_804542.1 1036457 D 278197 CDS YP_804543.1 116492808 4417682 1038292..1039197 1 NC_008525.1 LysR family transcriptional regulator 1039197 4417682 PEPE_1045 Pediococcus pentosaceus ATCC 25745 LysR family transcriptional regulator YP_804543.1 1038292 D 278197 CDS YP_804544.1 116492809 4417683 complement(1039633..1040085) 1 NC_008525.1 transcriptional regulator 1040085 4417683 PEPE_1046 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_804544.1 1039633 R 278197 CDS YP_804545.1 116492810 4417684 1040179..1040778 1 NC_008525.1 putative NADPH-quinone reductase (modulator of drug activity B) 1040778 4417684 PEPE_1047 Pediococcus pentosaceus ATCC 25745 putative NADPH-quinone reductase (modulator of drug activity B) YP_804545.1 1040179 D 278197 CDS YP_804546.1 116492811 4417685 complement(1041191..1043344) 1 NC_008525.1 hypothetical protein 1043344 4417685 PEPE_1048 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804546.1 1041191 R 278197 CDS YP_804547.1 116492812 4417704 complement(1043443..1044681) 1 NC_008525.1 hypothetical protein 1044681 4417704 PEPE_1049 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804547.1 1043443 R 278197 CDS YP_804548.1 116492813 4417705 complement(1045033..1045878) 1 NC_008525.1 transcriptional regulator 1045878 4417705 PEPE_1050 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_804548.1 1045033 R 278197 CDS YP_804549.1 116492814 4417706 complement(1046069..1046494) 1 NC_008525.1 nucleoside diphosphate kinase 1046494 4417706 PEPE_1051 Pediococcus pentosaceus ATCC 25745 nucleoside diphosphate kinase YP_804549.1 1046069 R 278197 CDS YP_804550.1 116492815 4417707 1046612..1047106 1 NC_008525.1 acetyltransferase 1047106 4417707 PEPE_1052 Pediococcus pentosaceus ATCC 25745 acetyltransferase YP_804550.1 1046612 D 278197 CDS YP_804551.1 116492816 4417708 1047295..1048800 1 NC_008525.1 amino acid transporter 1048800 4417708 PEPE_1053 Pediococcus pentosaceus ATCC 25745 amino acid transporter YP_804551.1 1047295 D 278197 CDS YP_804552.1 116492817 4417709 1048787..1048864 1 NC_008525.1 hypothetical protein 1048864 4417709 PEPE_1054 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804552.1 1048787 D 278197 CDS YP_804553.1 116492818 4417710 complement(1049204..1050586) 1 NC_008525.1 D-xylose proton-symporter 1050586 4417710 PEPE_1055 Pediococcus pentosaceus ATCC 25745 D-xylose proton-symporter YP_804553.1 1049204 R 278197 CDS YP_804554.1 116492819 4417711 complement(1050666..1051118) 1 NC_008525.1 ADP-ribose pyrophosphatase 1051118 4417711 PEPE_1056 Pediococcus pentosaceus ATCC 25745 ADP-ribose pyrophosphatase YP_804554.1 1050666 R 278197 CDS YP_804555.1 116492820 4417712 complement(1051556..1052452) 1 NC_008525.1 AraC family transcriptional regulator 1052452 4417712 PEPE_1057 Pediococcus pentosaceus ATCC 25745 AraC family transcriptional regulator YP_804555.1 1051556 R 278197 CDS YP_804556.1 116492821 4417713 1052624..1055926 1 NC_008525.1 TPR repeat-containing protein 1055926 4417713 PEPE_1058 Pediococcus pentosaceus ATCC 25745 TPR repeat-containing protein YP_804556.1 1052624 D 278197 CDS YP_804557.1 116492822 4417714 1055975..1057000 1 NC_008525.1 aldose 1-epimerase 1057000 4417714 PEPE_1059 Pediococcus pentosaceus ATCC 25745 aldose 1-epimerase YP_804557.1 1055975 D 278197 CDS YP_804558.1 116492823 4417715 complement(1057104..1057457) 1 NC_008525.1 arsenate reductase 1057457 4417715 PEPE_1060 Pediococcus pentosaceus ATCC 25745 arsenate reductase YP_804558.1 1057104 R 278197 CDS YP_804559.1 116492824 4417716 complement(1057605..1058942) 1 NC_008525.1 Na+/H+ antiporter 1058942 4417716 PEPE_1061 Pediococcus pentosaceus ATCC 25745 Na+/H+ antiporter YP_804559.1 1057605 R 278197 CDS YP_804560.1 116492825 4417717 complement(1059135..1060553) 1 NC_008525.1 periplasmic protease 1060553 4417717 PEPE_1062 Pediococcus pentosaceus ATCC 25745 periplasmic protease YP_804560.1 1059135 R 278197 CDS YP_804561.1 116492826 4417718 complement(1060553..1060777) 1 NC_008525.1 hypothetical protein 1060777 4417718 PEPE_1063 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804561.1 1060553 R 278197 CDS YP_804562.1 116492827 4417719 complement(1060789..1061379) 1 NC_008525.1 hypothetical protein 1061379 4417719 PEPE_1064 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804562.1 1060789 R 278197 CDS YP_804563.1 116492828 4417720 complement(1061388..1062305) 1 NC_008525.1 lysophospholipase L1 related esterase 1062305 4417720 PEPE_1065 Pediococcus pentosaceus ATCC 25745 lysophospholipase L1 related esterase YP_804563.1 1061388 R 278197 CDS YP_804564.1 116492829 4417721 complement(1062370..1063215) 1 NC_008525.1 hypothetical protein 1063215 4417721 PEPE_1066 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804564.1 1062370 R 278197 CDS YP_804565.1 116492830 4417071 complement(1063452..1064189) 1 NC_008525.1 ABC-type polar amino acid transport system, ATPase component 1064189 4417071 PEPE_1067 Pediococcus pentosaceus ATCC 25745 ABC-type polar amino acid transport system, ATPase component YP_804565.1 1063452 R 278197 CDS YP_804566.1 116492831 4417072 complement(1064186..1065637) 1 NC_008525.1 ABC-type amino acid transport system, permease and periplasmic component 1065637 4417072 PEPE_1068 Pediococcus pentosaceus ATCC 25745 ABC-type amino acid transport system, permease and periplasmic component YP_804566.1 1064186 R 278197 CDS YP_804567.1 116492832 4417073 complement(1065759..1066244) 1 NC_008525.1 dihydrofolate reductase 1066244 4417073 PEPE_1069 Pediococcus pentosaceus ATCC 25745 dihydrofolate reductase YP_804567.1 1065759 R 278197 CDS YP_804568.1 116492833 4417074 complement(1066273..1067223) 1 NC_008525.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 1067223 thyA 4417074 thyA Pediococcus pentosaceus ATCC 25745 thymidylate synthase YP_804568.1 1066273 R 278197 CDS YP_804569.1 116492834 4417075 complement(1067236..1069113) 1 NC_008525.1 ABC transporter ATPase 1069113 4417075 PEPE_1071 Pediococcus pentosaceus ATCC 25745 ABC transporter ATPase YP_804569.1 1067236 R 278197 CDS YP_804570.1 116492835 4417076 complement(1069116..1070306) 1 NC_008525.1 tRNA nucleotidyltransferase/poly(A) polymerase 1070306 4417076 PEPE_1072 Pediococcus pentosaceus ATCC 25745 tRNA nucleotidyltransferase/poly(A) polymerase YP_804570.1 1069116 R 278197 CDS YP_804571.1 116492836 4417077 1070578..1071462 1 NC_008525.1 hypothetical protein 1071462 4417077 PEPE_1073 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804571.1 1070578 D 278197 CDS YP_804572.1 116492837 4417078 complement(1071517..1071987) 1 NC_008525.1 purine deoxyribosyltransferase 1071987 4417078 PEPE_1074 Pediococcus pentosaceus ATCC 25745 purine deoxyribosyltransferase YP_804572.1 1071517 R 278197 CDS YP_804573.1 116492838 4417079 complement(1072173..1072475) 1 NC_008525.1 hypothetical protein 1072475 4417079 PEPE_1075 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804573.1 1072173 R 278197 CDS YP_804574.1 116492839 4417080 complement(1072498..1073766) 1 NC_008525.1 TPR repeat-containing protein 1073766 4417080 PEPE_1076 Pediococcus pentosaceus ATCC 25745 TPR repeat-containing protein YP_804574.1 1072498 R 278197 CDS YP_804575.1 116492840 4417081 complement(1073833..1074108) 1 NC_008525.1 nucleoid protein Hbs 1074108 4417081 PEPE_1077 Pediococcus pentosaceus ATCC 25745 nucleoid protein Hbs YP_804575.1 1073833 R 278197 CDS YP_804576.1 116492841 4417083 complement(1075727..1076935) 1 NC_008525.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1076935 rpsA 4417083 rpsA Pediococcus pentosaceus ATCC 25745 30S ribosomal protein S1 YP_804576.1 1075727 R 278197 CDS YP_804577.1 116492842 4417084 complement(1077011..1077691) 1 NC_008525.1 cytidylate kinase 1077691 4417084 PEPE_1080 Pediococcus pentosaceus ATCC 25745 cytidylate kinase YP_804577.1 1077011 R 278197 CDS YP_804578.1 116492843 4417085 complement(1077707..1078384) 1 NC_008525.1 LysM domain-containing protein 1078384 4417085 PEPE_1081 Pediococcus pentosaceus ATCC 25745 LysM domain-containing protein YP_804578.1 1077707 R 278197 CDS YP_804579.1 116492844 4417086 complement(1078457..1079881) 1 NC_008525.1 ATP-dependent DNA helicase RecQ 1079881 4417086 PEPE_1082 Pediococcus pentosaceus ATCC 25745 ATP-dependent DNA helicase RecQ YP_804579.1 1078457 R 278197 CDS YP_804580.1 116492845 4417087 complement(1079868..1080896) 1 NC_008525.1 hypothetical protein 1080896 4417087 PEPE_1083 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804580.1 1079868 R 278197 CDS YP_804581.1 116492846 4417019 complement(1080893..1081618) 1 NC_008525.1 ribosomal large subunit pseudouridine synthase B 1081618 4417019 PEPE_1084 Pediococcus pentosaceus ATCC 25745 ribosomal large subunit pseudouridine synthase B YP_804581.1 1080893 R 278197 CDS YP_804582.1 116492847 4417020 complement(1081619..1082209) 1 NC_008525.1 condensin subunit ScpB 1082209 4417020 PEPE_1085 Pediococcus pentosaceus ATCC 25745 condensin subunit ScpB YP_804582.1 1081619 R 278197 CDS YP_804583.1 116492848 4417021 complement(1082209..1082937) 1 NC_008525.1 condensin subunit ScpA 1082937 4417021 PEPE_1086 Pediococcus pentosaceus ATCC 25745 condensin subunit ScpA YP_804583.1 1082209 R 278197 CDS YP_804584.1 116492849 4417022 complement(1082927..1083286) 1 NC_008525.1 riboflavin biosynthesis acetyltransferase RibT 1083286 4417022 PEPE_1087 Pediococcus pentosaceus ATCC 25745 riboflavin biosynthesis acetyltransferase RibT YP_804584.1 1082927 R 278197 CDS YP_804585.1 116492850 4417023 complement(1083302..1084189) 1 NC_008525.1 tyrosine recombinase XerD subunit 1084189 4417023 PEPE_1088 Pediococcus pentosaceus ATCC 25745 tyrosine recombinase XerD subunit YP_804585.1 1083302 R 278197 CDS YP_804586.1 116492851 4417024 complement(1084192..1085058) 1 NC_008525.1 RNA-binding protein 1085058 4417024 PEPE_1089 Pediococcus pentosaceus ATCC 25745 RNA-binding protein YP_804586.1 1084192 R 278197 CDS YP_804587.1 116492852 4417025 complement(1085076..1085534) 1 NC_008525.1 hypothetical protein 1085534 4417025 PEPE_1090 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804587.1 1085076 R 278197 CDS YP_804588.1 116492853 4417026 1085993..1086358 1 NC_008525.1 hypothetical protein 1086358 4417026 PEPE_1091 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804588.1 1085993 D 278197 CDS YP_804589.1 116492854 4417027 complement(1086542..1088305) 1 NC_008525.1 pyruvate kinase 1088305 4417027 PEPE_1092 Pediococcus pentosaceus ATCC 25745 pyruvate kinase YP_804589.1 1086542 R 278197 CDS YP_804590.1 116492855 4417028 complement(1088378..1089346) 1 NC_008525.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 1089346 4417028 PEPE_1093 Pediococcus pentosaceus ATCC 25745 6-phosphofructokinase YP_804590.1 1088378 R 278197 CDS YP_804591.1 116492856 4417029 complement(1089469..1092792) 1 NC_008525.1 DNA polymerase III catalytic subunit, DnaE type 1092792 4417029 PEPE_1094 Pediococcus pentosaceus ATCC 25745 DNA polymerase III catalytic subunit, DnaE type YP_804591.1 1089469 R 278197 CDS YP_804592.1 116492857 4417030 1092919..1093092 1 NC_008525.1 hypothetical protein 1093092 4417030 PEPE_1095 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804592.1 1092919 D 278197 CDS YP_804593.1 116492858 4417031 complement(1093137..1095728) 1 NC_008525.1 ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones 1095728 4417031 PEPE_1096 Pediococcus pentosaceus ATCC 25745 ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones YP_804593.1 1093137 R 278197 CDS YP_804594.1 116492859 4417032 complement(1095748..1096539) 1 NC_008525.1 hypothetical protein 1096539 4417032 PEPE_1097 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804594.1 1095748 R 278197 CDS YP_804595.1 116492860 4417033 complement(1096529..1097227) 1 NC_008525.1 SAM-dependent methyltransferase 1097227 4417033 PEPE_1098 Pediococcus pentosaceus ATCC 25745 SAM-dependent methyltransferase YP_804595.1 1096529 R 278197 CDS YP_804596.1 116492861 4417034 complement(1097323..1098462) 1 NC_008525.1 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 1098462 4417034 PEPE_1099 Pediococcus pentosaceus ATCC 25745 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) YP_804596.1 1097323 R 278197 CDS YP_804597.1 116492862 4417035 complement(1098480..1100342) 1 NC_008525.1 DNA primase 1100342 4417035 PEPE_1100 Pediococcus pentosaceus ATCC 25745 DNA primase YP_804597.1 1098480 R 278197 CDS YP_804598.1 116492863 4417036 complement(1100594..1102666) 1 NC_008525.1 glycyl-tRNA synthetase subunit beta 1102666 4417036 PEPE_1101 Pediococcus pentosaceus ATCC 25745 glycyl-tRNA synthetase subunit beta YP_804598.1 1100594 R 278197 CDS YP_804599.1 116492864 4417037 complement(1102666..1103565) 1 NC_008525.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 1103565 glyQ 4417037 glyQ Pediococcus pentosaceus ATCC 25745 glycyl-tRNA synthetase subunit alpha YP_804599.1 1102666 R 278197 CDS YP_804600.1 116492865 4417038 complement(1103839..1104600) 1 NC_008525.1 DNA replication and repair protein RecO 1104600 4417038 PEPE_1103 Pediococcus pentosaceus ATCC 25745 DNA replication and repair protein RecO YP_804600.1 1103839 R 278197 CDS YP_804601.1 116492866 4417039 complement(1104603..1105517) 1 NC_008525.1 GTPase 1105517 4417039 PEPE_1104 Pediococcus pentosaceus ATCC 25745 GTPase YP_804601.1 1104603 R 278197 CDS YP_804602.1 116492867 4417040 complement(1105540..1105929) 1 NC_008525.1 diacylglycerol kinase 1105929 4417040 PEPE_1105 Pediococcus pentosaceus ATCC 25745 diacylglycerol kinase YP_804602.1 1105540 R 278197 CDS YP_804603.1 116492868 4417041 complement(1105907..1106377) 1 NC_008525.1 metal-dependent hydrolase 1106377 4417041 PEPE_1106 Pediococcus pentosaceus ATCC 25745 metal-dependent hydrolase YP_804603.1 1105907 R 278197 CDS YP_804604.1 116492869 4417042 complement(1106383..1107351) 1 NC_008525.1 phosphate starvation-inducible protein PhoH, ATPase 1107351 4417042 PEPE_1107 Pediococcus pentosaceus ATCC 25745 phosphate starvation-inducible protein PhoH, ATPase YP_804604.1 1106383 R 278197 CDS YP_804605.1 116492870 4417043 complement(1107363..1107806) 1 NC_008525.1 GatB/YqeY domain-containing protein 1107806 4417043 PEPE_1108 Pediococcus pentosaceus ATCC 25745 GatB/YqeY domain-containing protein YP_804605.1 1107363 R 278197 CDS YP_804606.1 116492871 4417044 complement(1107868..1108053) 1 NC_008525.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 1108053 rpsU 4417044 rpsU Pediococcus pentosaceus ATCC 25745 30S ribosomal protein S21 YP_804606.1 1107868 R 278197 CDS YP_804607.1 116492872 4417045 1108252..1109061 1 NC_008525.1 hypothetical protein 1109061 4417045 PEPE_1110 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804607.1 1108252 D 278197 CDS YP_804608.1 116492873 4417046 complement(1109126..1110016) 1 NC_008525.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 1110016 4417046 PEPE_1111 Pediococcus pentosaceus ATCC 25745 endonuclease IV YP_804608.1 1109126 R 278197 CDS YP_804609.1 116492874 4417047 complement(1110013..1111224) 1 NC_008525.1 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 1111224 4417047 PEPE_1112 Pediococcus pentosaceus ATCC 25745 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase YP_804609.1 1110013 R 278197 CDS YP_804610.1 116492875 4417048 complement(1111217..1112374) 1 NC_008525.1 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 1112374 4417048 PEPE_1113 Pediococcus pentosaceus ATCC 25745 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase YP_804610.1 1111217 R 278197 CDS YP_804611.1 116492876 4417049 complement(1112385..1113263) 1 NC_008525.1 hypothetical protein 1113263 4417049 PEPE_1114 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804611.1 1112385 R 278197 CDS YP_804612.1 116492877 4417050 complement(1113418..1115199) 1 NC_008525.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1115199 aspS 4417050 aspS Pediococcus pentosaceus ATCC 25745 aspartyl-tRNA synthetase YP_804612.1 1113418 R 278197 CDS YP_804613.1 116492878 4417051 complement(1115213..1116487) 1 NC_008525.1 histidyl-tRNA synthetase 1116487 4417051 PEPE_1116 Pediococcus pentosaceus ATCC 25745 histidyl-tRNA synthetase YP_804613.1 1115213 R 278197 CDS YP_804614.1 116492879 4417052 1116830..1117699 1 NC_008525.1 N-acetylmuramoyl-L-alanine amidase 1117699 4417052 PEPE_1117 Pediococcus pentosaceus ATCC 25745 N-acetylmuramoyl-L-alanine amidase YP_804614.1 1116830 D 278197 CDS YP_804615.1 116492880 4417053 complement(1117669..1118307) 1 NC_008525.1 P-Ser-HPr phosphatase 1118307 4417053 PEPE_1118 Pediococcus pentosaceus ATCC 25745 P-Ser-HPr phosphatase YP_804615.1 1117669 R 278197 CDS YP_804616.1 116492881 4417088 complement(1118402..1118851) 1 NC_008525.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 1118851 4417088 PEPE_1119 Pediococcus pentosaceus ATCC 25745 D-tyrosyl-tRNA(Tyr) deacylase YP_804616.1 1118402 R 278197 CDS YP_804617.1 116492882 4417089 complement(1118861..1121092) 1 NC_008525.1 guanosine polyphosphate pyrophosphohydrolase/synthetase 1121092 4417089 PEPE_1120 Pediococcus pentosaceus ATCC 25745 guanosine polyphosphate pyrophosphohydrolase/synthetase YP_804617.1 1118861 R 278197 CDS YP_804618.1 116492883 4417090 complement(1121200..1121529) 1 NC_008525.1 hypothetical protein 1121529 4417090 PEPE_1121 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804618.1 1121200 R 278197 CDS YP_804619.1 116492884 4417091 complement(1121544..1122281) 1 NC_008525.1 hypothetical protein 1122281 4417091 PEPE_1122 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804619.1 1121544 R 278197 CDS YP_804620.1 116492885 4417092 complement(1122291..1123241) 1 NC_008525.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase 1123241 prmA 4417092 prmA Pediococcus pentosaceus ATCC 25745 ribosomal protein L11 methyltransferase YP_804620.1 1122291 R 278197 CDS YP_804621.1 116492886 4417093 complement(1123315..1124607) 1 NC_008525.1 xanthine/uracil permease 1124607 4417093 PEPE_1124 Pediococcus pentosaceus ATCC 25745 xanthine/uracil permease YP_804621.1 1123315 R 278197 CDS YP_804622.1 116492887 4417094 complement(1124805..1125068) 1 NC_008525.1 hypothetical protein 1125068 4417094 PEPE_1125 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804622.1 1124805 R 278197 CDS YP_804623.1 116492888 4417095 1125491..1126390 1 NC_008525.1 DMT family permease 1126390 4417095 PEPE_1126 Pediococcus pentosaceus ATCC 25745 DMT family permease YP_804623.1 1125491 D 278197 CDS YP_804624.1 116492889 4417096 complement(1126431..1127168) 1 NC_008525.1 nitroreductase 1127168 4417096 PEPE_1127 Pediococcus pentosaceus ATCC 25745 nitroreductase YP_804624.1 1126431 R 278197 CDS YP_804625.1 116492890 4417098 complement(1127923..1128441) 1 NC_008525.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1128441 4417098 PEPE_1129 Pediococcus pentosaceus ATCC 25745 adenine phosphoribosyltransferase YP_804625.1 1127923 R 278197 CDS YP_804626.1 116492891 4417099 complement(1128443..1130764) 1 NC_008525.1 exonuclease RecJ 1130764 4417099 PEPE_1130 Pediococcus pentosaceus ATCC 25745 exonuclease RecJ YP_804626.1 1128443 R 278197 CDS YP_804627.1 116492892 4417100 complement(1130778..1131563) 1 NC_008525.1 Short-chain dehydrogenase of various substrate specificities 1131563 4417100 PEPE_1131 Pediococcus pentosaceus ATCC 25745 Short-chain dehydrogenase of various substrate specificities YP_804627.1 1130778 R 278197 CDS YP_804628.1 116492893 4417101 complement(1131581..1132507) 1 NC_008525.1 beta-lactamase superfamily hydrolase 1132507 4417101 PEPE_1132 Pediococcus pentosaceus ATCC 25745 beta-lactamase superfamily hydrolase YP_804628.1 1131581 R 278197 CDS YP_804629.1 116492894 4417102 1132632..1132922 1 NC_008525.1 hypothetical protein 1132922 4417102 PEPE_1133 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804629.1 1132632 D 278197 CDS YP_804630.1 116492895 4417103 complement(1132997..1134289) 1 NC_008525.1 GTPase 1134289 4417103 PEPE_1134 Pediococcus pentosaceus ATCC 25745 GTPase YP_804630.1 1132997 R 278197 CDS YP_804631.1 116492896 4417104 complement(1134348..1136132) 1 NC_008525.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1136132 uvrC 4417104 uvrC Pediococcus pentosaceus ATCC 25745 excinuclease ABC subunit C YP_804631.1 1134348 R 278197 CDS YP_804632.1 116492897 4417818 complement(1136244..1136987) 1 NC_008525.1 ABC-type polar amino acid transport system, ATPase component 1136987 4417818 PEPE_1136 Pediococcus pentosaceus ATCC 25745 ABC-type polar amino acid transport system, ATPase component YP_804632.1 1136244 R 278197 CDS YP_804633.1 116492898 4417819 complement(1136980..1138446) 1 NC_008525.1 ABC-type amino acid transport system, permease and periplasmic component 1138446 4417819 PEPE_1137 Pediococcus pentosaceus ATCC 25745 ABC-type amino acid transport system, permease and periplasmic component YP_804633.1 1136980 R 278197 CDS YP_804634.1 116492899 4417820 1138635..1138778 1 NC_008525.1 hypothetical protein 1138778 4417820 PEPE_1138 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804634.1 1138635 D 278197 CDS YP_804635.1 116492900 4417821 complement(1138822..1139112) 1 NC_008525.1 pyrophosphatase 1139112 4417821 PEPE_1139 Pediococcus pentosaceus ATCC 25745 pyrophosphatase YP_804635.1 1138822 R 278197 CDS YP_804636.1 116492901 4417822 complement(1139114..1139701) 1 NC_008525.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 1139701 engB 4417822 engB Pediococcus pentosaceus ATCC 25745 ribosome biogenesis GTP-binding protein YsxC YP_804636.1 1139114 R 278197 CDS YP_804637.1 116492902 4417823 complement(1139801..1141057) 1 NC_008525.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1141057 clpX 4417823 clpX Pediococcus pentosaceus ATCC 25745 ATP-dependent protease ATP-binding subunit ClpX YP_804637.1 1139801 R 278197 CDS YP_804638.1 116492903 4417824 complement(1141197..1142504) 1 NC_008525.1 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) 1142504 4417824 PEPE_1142 Pediococcus pentosaceus ATCC 25745 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) YP_804638.1 1141197 R 278197 CDS YP_804639.1 116492904 4417825 complement(1142645..1143832) 1 NC_008525.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 1143832 4417825 PEPE_1143 Pediococcus pentosaceus ATCC 25745 elongation factor Tu YP_804639.1 1142645 R 278197 CDS YP_804640.1 116492905 4417826 complement(1144016..1144882) 1 NC_008525.1 BS_ysoA-like protein 1144882 4417826 PEPE_1144 Pediococcus pentosaceus ATCC 25745 BS_ysoA-like protein YP_804640.1 1144016 R 278197 CDS YP_804641.1 116492906 4417827 complement(1144884..1146641) 1 NC_008525.1 metallo-beta-lactamase superfamily hydrolase 1146641 4417827 PEPE_1145 Pediococcus pentosaceus ATCC 25745 metallo-beta-lactamase superfamily hydrolase YP_804641.1 1144884 R 278197 CDS YP_804642.1 116492907 4417828 complement(1146721..1146990) 1 NC_008525.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1146990 rpsO 4417828 rpsO Pediococcus pentosaceus ATCC 25745 30S ribosomal protein S15 YP_804642.1 1146721 R 278197 CDS YP_804643.1 116492908 4417829 1147196..1147450 1 NC_008525.1 SSU ribosomal protein S20P 1147450 4417829 PEPE_1147 Pediococcus pentosaceus ATCC 25745 SSU ribosomal protein S20P YP_804643.1 1147196 D 278197 CDS YP_804644.1 116492909 4417830 complement(1147476..1148495) 1 NC_008525.1 DNA polymerase III, delta subunit 1148495 4417830 PEPE_1148 Pediococcus pentosaceus ATCC 25745 DNA polymerase III, delta subunit YP_804644.1 1147476 R 278197 CDS YP_804645.1 116492910 4417831 complement(1148492..1150597) 1 NC_008525.1 metallo-beta-lactamase superfamily hydrolase 1150597 4417831 PEPE_1149 Pediococcus pentosaceus ATCC 25745 metallo-beta-lactamase superfamily hydrolase YP_804645.1 1148492 R 278197 CDS YP_804646.1 116492911 4417832 complement(1150743..1151225) 1 NC_008525.1 deoxycytidylate deaminase 1151225 4417832 PEPE_1150 Pediococcus pentosaceus ATCC 25745 deoxycytidylate deaminase YP_804646.1 1150743 R 278197 CDS YP_804647.1 116492912 4417833 complement(1151244..1151951) 1 NC_008525.1 DNA uptake protein related DNA-binding protein 1151951 4417833 PEPE_1151 Pediococcus pentosaceus ATCC 25745 DNA uptake protein related DNA-binding protein YP_804647.1 1151244 R 278197 CDS YP_804648.1 116492913 4417834 complement(1152021..1152497) 1 NC_008525.1 phosphopantetheine adenylyltransferase 1152497 4417834 PEPE_1152 Pediococcus pentosaceus ATCC 25745 phosphopantetheine adenylyltransferase YP_804648.1 1152021 R 278197 CDS YP_804649.1 116492914 4417616 complement(1152502..1153053) 1 NC_008525.1 N6-adenine-specific methylase 1153053 4417616 PEPE_1153 Pediococcus pentosaceus ATCC 25745 N6-adenine-specific methylase YP_804649.1 1152502 R 278197 CDS YP_804650.1 116492915 4417617 complement(1153050..1153310) 1 NC_008525.1 hypothetical protein 1153310 4417617 PEPE_1154 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804650.1 1153050 R 278197 CDS YP_804651.1 116492916 4417618 complement(1153312..1154520) 1 NC_008525.1 cell division membrane protein 1154520 4417618 PEPE_1155 Pediococcus pentosaceus ATCC 25745 cell division membrane protein YP_804651.1 1153312 R 278197 CDS YP_804652.1 116492917 4417619 complement(1154622..1156466) 1 NC_008525.1 stress response membrane GTPase 1156466 4417619 PEPE_1156 Pediococcus pentosaceus ATCC 25745 stress response membrane GTPase YP_804652.1 1154622 R 278197 CDS YP_804653.1 116492918 4417620 complement(1156541..1157326) 1 NC_008525.1 fructose-1 6-bisphosphatase 1157326 4417620 PEPE_1157 Pediococcus pentosaceus ATCC 25745 fructose-1 6-bisphosphatase YP_804653.1 1156541 R 278197 CDS YP_804654.1 116492919 4417621 complement(1157310..1157609) 1 NC_008525.1 hypothetical protein 1157609 4417621 PEPE_1158 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804654.1 1157310 R 278197 CDS YP_804655.1 116492920 4417622 1157694..1158248 1 NC_008525.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1158248 def 4417622 def Pediococcus pentosaceus ATCC 25745 peptide deformylase YP_804655.1 1157694 D 278197 CDS YP_804656.1 116492921 4417623 complement(1158345..1158812) 1 NC_008525.1 hypothetical protein 1158812 4417623 PEPE_1160 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804656.1 1158345 R 278197 CDS YP_804657.1 116492922 4417624 1158975..1159190 1 NC_008525.1 RNA-binding protein 1159190 4417624 PEPE_1161 Pediococcus pentosaceus ATCC 25745 RNA-binding protein YP_804657.1 1158975 D 278197 CDS YP_804658.1 116492923 4417625 1159195..1160871 1 NC_008525.1 mRNA degradation ribonuclease J1/J2enzyme 1160871 4417625 PEPE_1162 Pediococcus pentosaceus ATCC 25745 mRNA degradation ribonuclease J1/J2enzyme YP_804658.1 1159195 D 278197 CDS YP_804659.1 116492924 4417626 complement(1161050..1162540) 1 NC_008525.1 cell wall hydrolase 1162540 4417626 PEPE_1163 Pediococcus pentosaceus ATCC 25745 cell wall hydrolase YP_804659.1 1161050 R 278197 CDS YP_804660.1 116492925 4417627 complement(1162903..1164816) 1 NC_008525.1 fusion of IIA, IIB and IIC component of mannitol/fructose-specific phosphotransferase system mannitol/fructose-specific 1164816 4417627 PEPE_1164 Pediococcus pentosaceus ATCC 25745 fusion of IIA, IIB and IIC component of mannitol/fructose-specific phosphotransferase system mannitol/fructose-specific YP_804660.1 1162903 R 278197 CDS YP_804661.1 116492926 4417628 complement(1164828..1165739) 1 NC_008525.1 tagatose-6-phosphate kinase 1165739 4417628 PEPE_1165 Pediococcus pentosaceus ATCC 25745 tagatose-6-phosphate kinase YP_804661.1 1164828 R 278197 CDS YP_804662.1 116492927 4417629 complement(1165736..1166485) 1 NC_008525.1 lactose transport regulator 1166485 4417629 PEPE_1166 Pediococcus pentosaceus ATCC 25745 lactose transport regulator YP_804662.1 1165736 R 278197 CDS YP_804663.1 116492928 4417630 complement(1166616..1167668) 1 NC_008525.1 permease 1167668 4417630 PEPE_1167 Pediococcus pentosaceus ATCC 25745 permease YP_804663.1 1166616 R 278197 CDS YP_804664.1 116492929 4417631 complement(1167759..1168736) 1 NC_008525.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1168736 4417631 PEPE_1168 Pediococcus pentosaceus ATCC 25745 ribose-phosphate pyrophosphokinase YP_804664.1 1167759 R 278197 CDS YP_804665.1 116492930 4417632 complement(1168805..1171249) 1 NC_008525.1 ATP-dependent RecD/TraA family DNA helicase 1171249 4417632 PEPE_1169 Pediococcus pentosaceus ATCC 25745 ATP-dependent RecD/TraA family DNA helicase YP_804665.1 1168805 R 278197 CDS YP_804666.1 116492931 4417633 complement(1171249..1171899) 1 NC_008525.1 TPR repeat-containing protein 1171899 4417633 PEPE_1170 Pediococcus pentosaceus ATCC 25745 TPR repeat-containing protein YP_804666.1 1171249 R 278197 CDS YP_804667.1 116492932 4417570 complement(1171913..1172587) 1 NC_008525.1 fructose-2,6-bisphosphatase 1172587 4417570 PEPE_1171 Pediococcus pentosaceus ATCC 25745 fructose-2,6-bisphosphatase YP_804667.1 1171913 R 278197 CDS YP_804668.1 116492933 4417571 complement(1172694..1173827) 1 NC_008525.1 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, PP-loop ATPase 1173827 4417571 PEPE_1172 Pediococcus pentosaceus ATCC 25745 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, PP-loop ATPase YP_804668.1 1172694 R 278197 CDS YP_804669.1 116492934 4417572 complement(1173949..1174290) 1 NC_008525.1 hypothetical protein 1174290 4417572 PEPE_1173 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804669.1 1173949 R 278197 CDS YP_804670.1 116492935 4417573 complement(1174306..1175466) 1 NC_008525.1 cysteine sulfinate desulfinase/cysteine desulfurase 1175466 4417573 PEPE_1174 Pediococcus pentosaceus ATCC 25745 cysteine sulfinate desulfinase/cysteine desulfurase YP_804670.1 1174306 R 278197 CDS YP_804671.1 116492936 4417574 complement(1175466..1176167) 1 NC_008525.1 methylthioadenosine nucleosidase 1176167 4417574 PEPE_1175 Pediococcus pentosaceus ATCC 25745 methylthioadenosine nucleosidase YP_804671.1 1175466 R 278197 CDS YP_804672.1 116492937 4417575 complement(1176179..1176439) 1 NC_008525.1 small membrane protein 1176439 4417575 PEPE_1176 Pediococcus pentosaceus ATCC 25745 small membrane protein YP_804672.1 1176179 R 278197 CDS YP_804673.1 116492938 4417576 complement(1176448..1176987) 1 NC_008525.1 NUDIX family hydrolase 1176987 4417576 PEPE_1177 Pediococcus pentosaceus ATCC 25745 NUDIX family hydrolase YP_804673.1 1176448 R 278197 CDS YP_804674.1 116492939 4417577 complement(1176990..1177199) 1 NC_008525.1 cold-shock DNA-binding protein family protein 1177199 4417577 PEPE_1178 Pediococcus pentosaceus ATCC 25745 cold-shock DNA-binding protein family protein YP_804674.1 1176990 R 278197 CDS YP_804675.1 116492940 4417578 complement(1177305..1180106) 1 NC_008525.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1180106 ileS 4417578 ileS Pediococcus pentosaceus ATCC 25745 isoleucyl-tRNA synthetase YP_804675.1 1177305 R 278197 CDS YP_804676.1 116492941 4417579 complement(1180363..1181094) 1 NC_008525.1 cell division initiation protein 1181094 4417579 PEPE_1180 Pediococcus pentosaceus ATCC 25745 cell division initiation protein YP_804676.1 1180363 R 278197 CDS YP_804677.1 116492942 4417580 complement(1181118..1181903) 1 NC_008525.1 cell division protein 1181903 4417580 PEPE_1181 Pediococcus pentosaceus ATCC 25745 cell division protein YP_804677.1 1181118 R 278197 CDS YP_804678.1 116492943 4417581 complement(1181906..1182178) 1 NC_008525.1 cell division membrane protein 1182178 4417581 PEPE_1182 Pediococcus pentosaceus ATCC 25745 cell division membrane protein YP_804678.1 1181906 R 278197 CDS YP_804679.1 116492944 4417582 complement(1182260..1183579) 1 NC_008525.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 1183579 4417582 PEPE_1183 Pediococcus pentosaceus ATCC 25745 cell division protein FtsZ YP_804679.1 1182260 R 278197 CDS YP_804680.1 116492945 4417583 complement(1183601..1184962) 1 NC_008525.1 cell division protein FtsA 1184962 4417583 PEPE_1184 Pediococcus pentosaceus ATCC 25745 cell division protein FtsA YP_804680.1 1183601 R 278197 CDS YP_804681.1 116492946 4417584 complement(1185260..1186372) 1 NC_008525.1 cell division protein FtsQ 1186372 4417584 PEPE_1185 Pediococcus pentosaceus ATCC 25745 cell division protein FtsQ YP_804681.1 1185260 R 278197 CDS YP_804682.1 116492947 4417585 complement(1186387..1187475) 1 NC_008525.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 1187475 4417585 PEPE_1186 Pediococcus pentosaceus ATCC 25745 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase YP_804682.1 1186387 R 278197 CDS YP_804683.1 116492948 4417586 complement(1187480..1188847) 1 NC_008525.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase 1188847 4417586 PEPE_1187 Pediococcus pentosaceus ATCC 25745 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_804683.1 1187480 R 278197 CDS YP_804684.1 116492949 4417921 complement(1188861..1189817) 1 NC_008525.1 phospho-N-acetylmuramoyl-pentapeptide- transferase 1189817 4417921 PEPE_1188 Pediococcus pentosaceus ATCC 25745 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_804684.1 1188861 R 278197 CDS YP_804685.1 116492950 4417922 complement(1189834..1191999) 1 NC_008525.1 cell division protein FtsI 1191999 4417922 PEPE_1189 Pediococcus pentosaceus ATCC 25745 cell division protein FtsI YP_804685.1 1189834 R 278197 CDS YP_804686.1 116492951 4417923 complement(1191996..1192382) 1 NC_008525.1 cell division protein FtsL 1192382 4417923 PEPE_1190 Pediococcus pentosaceus ATCC 25745 cell division protein FtsL YP_804686.1 1191996 R 278197 CDS YP_804687.1 116492952 4417924 complement(1192398..1193342) 1 NC_008525.1 S-adenosyl-methyltransferase MraW 1193342 mraW 4417924 mraW Pediococcus pentosaceus ATCC 25745 S-adenosyl-methyltransferase MraW YP_804687.1 1192398 R 278197 CDS YP_804688.1 116492953 4417925 complement(1193348..1193779) 1 NC_008525.1 hypothetical protein 1193779 4417925 PEPE_1192 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804688.1 1193348 R 278197 CDS YP_804689.1 116492954 4417926 1194022..1194150 1 NC_008525.1 hypothetical protein 1194150 4417926 PEPE_1193 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804689.1 1194022 D 278197 CDS YP_804690.1 116492955 4417927 complement(1194198..1196549) 1 NC_008525.1 DNA segregation ATPase FtsK/SpoIIIE related protein 1196549 4417927 PEPE_1194 Pediococcus pentosaceus ATCC 25745 DNA segregation ATPase FtsK/SpoIIIE related protein YP_804690.1 1194198 R 278197 CDS YP_804691.1 116492956 4417928 complement(1196558..1197076) 1 NC_008525.1 rRNA methylase (SpoU class) 1197076 4417928 PEPE_1195 Pediococcus pentosaceus ATCC 25745 rRNA methylase (SpoU class) YP_804691.1 1196558 R 278197 CDS YP_804692.1 116492957 4417929 complement(1197254..1198396) 1 NC_008525.1 permease 1198396 4417929 PEPE_1196 Pediococcus pentosaceus ATCC 25745 permease YP_804692.1 1197254 R 278197 CDS YP_804693.1 116492958 4417930 complement(1198410..1198766) 1 NC_008525.1 glucitol/sorbitol PTS, EIIA 1198766 4417930 PEPE_1197 Pediococcus pentosaceus ATCC 25745 glucitol/sorbitol PTS, EIIA YP_804693.1 1198410 R 278197 CDS YP_804694.1 116492959 4417931 1198904..1199914 1 NC_008525.1 3-carboxymuconate cyclase 1199914 4417931 PEPE_1198 Pediococcus pentosaceus ATCC 25745 3-carboxymuconate cyclase YP_804694.1 1198904 D 278197 CDS YP_804695.1 116492960 4417932 1199932..1200561 1 NC_008525.1 copper resistance protein 1200561 4417932 PEPE_1199 Pediococcus pentosaceus ATCC 25745 copper resistance protein YP_804695.1 1199932 D 278197 CDS YP_804696.1 116492961 4417933 complement(1200609..1201958) 1 NC_008525.1 transcriptional regulator 1201958 4417933 PEPE_1200 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_804696.1 1200609 R 278197 CDS YP_804697.1 116492962 4417934 complement(1201951..1202712) 1 NC_008525.1 pseudouridylate synthase, 23S RNA-specific 1202712 4417934 PEPE_1201 Pediococcus pentosaceus ATCC 25745 pseudouridylate synthase, 23S RNA-specific YP_804697.1 1201951 R 278197 CDS YP_804698.1 116492963 4417935 complement(1202852..1203661) 1 NC_008525.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 1203661 ppnK 4417935 ppnK Pediococcus pentosaceus ATCC 25745 inorganic polyphosphate/ATP-NAD kinase YP_804698.1 1202852 R 278197 CDS YP_804699.1 116492964 4417936 complement(1203664..1204278) 1 NC_008525.1 RelA_SpoT domain-containing protein 1204278 4417936 PEPE_1203 Pediococcus pentosaceus ATCC 25745 RelA_SpoT domain-containing protein YP_804699.1 1203664 R 278197 CDS YP_804700.1 116492965 4417937 1204446..1205042 1 NC_008525.1 dithiol-disulfide isomerase 1205042 4417937 PEPE_1204 Pediococcus pentosaceus ATCC 25745 dithiol-disulfide isomerase YP_804700.1 1204446 D 278197 CDS YP_804701.1 116492966 4417938 complement(1205064..1206089) 1 NC_008525.1 competence protein 1206089 4417938 PEPE_1205 Pediococcus pentosaceus ATCC 25745 competence protein YP_804701.1 1205064 R 278197 CDS YP_804702.1 116492967 4417587 complement(1206186..1206911) 1 NC_008525.1 enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence; adaptor protein 1206911 4417587 PEPE_1206 Pediococcus pentosaceus ATCC 25745 adaptor protein YP_804702.1 1206186 R 278197 CDS YP_804703.1 116492968 4417588 complement(1207089..1207487) 1 NC_008525.1 arsenate reductase 1207487 4417588 PEPE_1207 Pediococcus pentosaceus ATCC 25745 arsenate reductase YP_804703.1 1207089 R 278197 CDS YP_804704.1 116492969 4417589 complement(1207744..1208481) 1 NC_008525.1 beta-lactamase superfamily hydrolase 1208481 4417589 PEPE_1208 Pediococcus pentosaceus ATCC 25745 beta-lactamase superfamily hydrolase YP_804704.1 1207744 R 278197 CDS YP_804705.1 116492970 4417590 1208591..1209076 1 NC_008525.1 monooxygenase 1209076 4417590 PEPE_1209 Pediococcus pentosaceus ATCC 25745 monooxygenase YP_804705.1 1208591 D 278197 CDS YP_804706.1 116492971 4417591 1209132..1209350 1 NC_008525.1 hypothetical protein 1209350 4417591 PEPE_1210 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804706.1 1209132 D 278197 CDS YP_804707.1 116492972 4417798 complement(1215828..1216202) 1 NC_008525.1 RNA-binding protein 1216202 4417798 PEPE_1224 Pediococcus pentosaceus ATCC 25745 RNA-binding protein YP_804707.1 1215828 R 278197 CDS YP_804708.1 116492973 4417799 1216315..1216959 1 NC_008525.1 hypothetical protein 1216959 4417799 PEPE_1225 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804708.1 1216315 D 278197 CDS YP_804709.1 116492974 4417800 complement(1216956..1217582) 1 NC_008525.1 hypothetical protein 1217582 4417800 PEPE_1226 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804709.1 1216956 R 278197 CDS YP_804710.1 116492975 4417853 complement(1217573..1218349) 1 NC_008525.1 HAD family sugar phosphatase 1218349 4417853 PEPE_1227 Pediococcus pentosaceus ATCC 25745 HAD family sugar phosphatase YP_804710.1 1217573 R 278197 CDS YP_804711.1 116492976 4417854 complement(1218350..1218886) 1 NC_008525.1 hypothetical protein 1218886 4417854 PEPE_1228 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804711.1 1218350 R 278197 CDS YP_804712.1 116492977 4417855 complement(1218949..1219557) 1 NC_008525.1 phosphoesterase or phosphohydrolase 1219557 4417855 PEPE_1229 Pediococcus pentosaceus ATCC 25745 phosphoesterase or phosphohydrolase YP_804712.1 1218949 R 278197 CDS YP_804713.1 116492978 4417856 complement(1219554..1220918) 1 NC_008525.1 gamma-aminobutyrate permease related permease 1220918 4417856 PEPE_1230 Pediococcus pentosaceus ATCC 25745 gamma-aminobutyrate permease related permease YP_804713.1 1219554 R 278197 CDS YP_804714.1 116492979 4417857 complement(1221010..1222014) 1 NC_008525.1 adenine-specific DNA methylase 1222014 4417857 PEPE_1231 Pediococcus pentosaceus ATCC 25745 adenine-specific DNA methylase YP_804714.1 1221010 R 278197 CDS YP_804715.1 116492980 4417858 complement(1222032..1222346) 1 NC_008525.1 hypothetical protein 1222346 4417858 PEPE_1232 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804715.1 1222032 R 278197 CDS YP_804716.1 116492981 4417859 complement(1222315..1222749) 1 NC_008525.1 hypothetical protein 1222749 4417859 PEPE_1233 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804716.1 1222315 R 278197 CDS YP_804717.1 116492982 4417860 complement(1222727..1222912) 1 NC_008525.1 hypothetical protein 1222912 4417860 PEPE_1234 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804717.1 1222727 R 278197 CDS YP_804718.1 116492983 4417861 complement(1222893..1223252) 1 NC_008525.1 hypothetical protein 1223252 4417861 PEPE_1235 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804718.1 1222893 R 278197 CDS YP_804719.1 116492984 4417862 complement(1223332..1223637) 1 NC_008525.1 competence protein ComGC 1223637 4417862 PEPE_1236 Pediococcus pentosaceus ATCC 25745 competence protein ComGC YP_804719.1 1223332 R 278197 CDS YP_804720.1 116492985 4417863 complement(1223634..1224644) 1 NC_008525.1 Type II secretory pathway/competence component 1224644 4417863 PEPE_1237 Pediococcus pentosaceus ATCC 25745 Type II secretory pathway/competence component YP_804720.1 1223634 R 278197 CDS YP_804721.1 116492986 4417864 complement(1224622..1225584) 1 NC_008525.1 Type II secretory pathway/competence component, ATPase 1225584 4417864 PEPE_1238 Pediococcus pentosaceus ATCC 25745 Type II secretory pathway/competence component, ATPase YP_804721.1 1224622 R 278197 CDS YP_804722.1 116492987 4417865 complement(1225703..1226614) 1 NC_008525.1 ribokinase family sugar kinase 1226614 4417865 PEPE_1239 Pediococcus pentosaceus ATCC 25745 ribokinase family sugar kinase YP_804722.1 1225703 R 278197 CDS YP_804723.1 116492988 4417866 complement(1226725..1227462) 1 NC_008525.1 hypothetical protein 1227462 4417866 PEPE_1240 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804723.1 1226725 R 278197 CDS YP_804724.1 116492989 4417867 complement(1227565..1227963) 1 NC_008525.1 hypothetical protein 1227963 4417867 PEPE_1241 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804724.1 1227565 R 278197 CDS YP_804725.1 116492990 4417868 complement(1227956..1228285) 1 NC_008525.1 hypothetical protein 1228285 4417868 PEPE_1242 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804725.1 1227956 R 278197 CDS YP_804726.1 116492991 4417869 complement(1228278..1229567) 1 NC_008525.1 nucleotidyltransferase/DNA polymerase for DNA repair 1229567 4417869 PEPE_1243 Pediococcus pentosaceus ATCC 25745 nucleotidyltransferase/DNA polymerase for DNA repair YP_804726.1 1228278 R 278197 CDS YP_804727.1 116492992 4417870 complement(1230042..1230599) 1 NC_008525.1 translation initiation factor 5A (eIF-5A) 1230599 4417870 PEPE_1244 Pediococcus pentosaceus ATCC 25745 translation initiation factor 5A (eIF-5A) YP_804727.1 1230042 R 278197 CDS YP_804728.1 116492993 4417105 complement(1230837..1231394) 1 NC_008525.1 amidase 1231394 4417105 PEPE_1245 Pediococcus pentosaceus ATCC 25745 amidase YP_804728.1 1230837 R 278197 CDS YP_804729.1 116492994 4417106 complement(1231423..1232721) 1 NC_008525.1 adenylosuccinate lyase 1232721 4417106 PEPE_1246 Pediococcus pentosaceus ATCC 25745 adenylosuccinate lyase YP_804729.1 1231423 R 278197 CDS YP_804730.1 116492995 4417107 1232902..1234197 1 NC_008525.1 adenylosuccinate synthetase 1234197 4417107 PEPE_1247 Pediococcus pentosaceus ATCC 25745 adenylosuccinate synthetase YP_804730.1 1232902 D 278197 CDS YP_804731.1 116492996 4417108 complement(1234221..1234964) 1 NC_008525.1 hypothetical protein 1234964 4417108 PEPE_1248 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804731.1 1234221 R 278197 CDS YP_804732.1 116492997 4417109 1235293..1236024 1 NC_008525.1 glycerol uptake facilitator related permease 1236024 4417109 PEPE_1249 Pediococcus pentosaceus ATCC 25745 glycerol uptake facilitator related permease YP_804732.1 1235293 D 278197 CDS YP_804733.1 116492998 4417110 complement(1236080..1237084) 1 NC_008525.1 LacI family transcription regulator 1237084 4417110 PEPE_1250 Pediococcus pentosaceus ATCC 25745 LacI family transcription regulator YP_804733.1 1236080 R 278197 CDS YP_804734.1 116492999 4417111 1237247..1238341 1 NC_008525.1 Mername-AA019 peptidase 1238341 4417111 PEPE_1251 Pediococcus pentosaceus ATCC 25745 Mername-AA019 peptidase YP_804734.1 1237247 D 278197 CDS YP_804735.1 116493000 4417112 complement(1238398..1240146) 1 NC_008525.1 pyruvate oxidase 1240146 4417112 PEPE_1252 Pediococcus pentosaceus ATCC 25745 pyruvate oxidase YP_804735.1 1238398 R 278197 CDS YP_804736.1 116493001 4417113 complement(1240314..1240664) 1 NC_008525.1 hypothetical protein 1240664 4417113 PEPE_1253 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804736.1 1240314 R 278197 CDS YP_804737.1 116493002 4417114 complement(1240677..1241090) 1 NC_008525.1 methyl-accepting chemotaxis-like protein 1241090 4417114 PEPE_1254 Pediococcus pentosaceus ATCC 25745 methyl-accepting chemotaxis-like protein YP_804737.1 1240677 R 278197 CDS YP_804738.1 116493003 4417115 1241220..1242065 1 NC_008525.1 small-conductance mechanosensitive channel 1242065 4417115 PEPE_1255 Pediococcus pentosaceus ATCC 25745 small-conductance mechanosensitive channel YP_804738.1 1241220 D 278197 CDS YP_804739.1 116493004 4417116 complement(1242152..1242748) 1 NC_008525.1 xanthosine triphosphate pyrophosphatase 1242748 4417116 PEPE_1256 Pediococcus pentosaceus ATCC 25745 xanthosine triphosphate pyrophosphatase YP_804739.1 1242152 R 278197 CDS YP_804740.1 116493005 4417117 complement(1242760..1243557) 1 NC_008525.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 1243557 4417117 PEPE_1257 Pediococcus pentosaceus ATCC 25745 glutamate racemase YP_804740.1 1242760 R 278197 CDS YP_804741.1 116493006 4417118 complement(1243699..1244010) 1 NC_008525.1 Thiol-disulfide isomerase and thioredoxin 1244010 4417118 PEPE_1258 Pediococcus pentosaceus ATCC 25745 Thiol-disulfide isomerase and thioredoxin YP_804741.1 1243699 R 278197 CDS YP_804742.1 116493007 4417119 complement(1244098..1246455) 1 NC_008525.1 MutS family ATPase 1246455 4417119 PEPE_1259 Pediococcus pentosaceus ATCC 25745 MutS family ATPase YP_804742.1 1244098 R 278197 CDS YP_804743.1 116493008 4417120 complement(1246542..1246829) 1 NC_008525.1 hypothetical protein 1246829 4417120 PEPE_1260 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804743.1 1246542 R 278197 CDS YP_804744.1 116493009 4417121 complement(1246840..1247280) 1 NC_008525.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 1247280 4417121 PEPE_1261 Pediococcus pentosaceus ATCC 25745 Holliday junction resolvase-like protein YP_804744.1 1246840 R 278197 CDS YP_804745.1 116493010 4417598 complement(1247280..1247561) 1 NC_008525.1 hypothetical protein 1247561 4417598 PEPE_1262 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804745.1 1247280 R 278197 CDS YP_804746.1 116493011 4417599 complement(1247654..1250299) 1 NC_008525.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1250299 alaS 4417599 alaS Pediococcus pentosaceus ATCC 25745 alanyl-tRNA synthetase YP_804746.1 1247654 R 278197 CDS YP_804747.1 116493012 4417600 complement(1250574..1251935) 1 NC_008525.1 superfamily II DNA/RNA helicase 1251935 4417600 PEPE_1264 Pediococcus pentosaceus ATCC 25745 superfamily II DNA/RNA helicase YP_804747.1 1250574 R 278197 CDS YP_804748.1 116493013 4417601 complement(1251950..1252885) 1 NC_008525.1 phosphoesterase, DHH family protein 1252885 4417601 PEPE_1265 Pediococcus pentosaceus ATCC 25745 phosphoesterase, DHH family protein YP_804748.1 1251950 R 278197 CDS YP_804749.1 116493014 4417602 complement(1252971..1254095) 1 NC_008525.1 nucleotidyltransferase/DNA polymerase for DNA repair 1254095 4417602 PEPE_1266 Pediococcus pentosaceus ATCC 25745 nucleotidyltransferase/DNA polymerase for DNA repair YP_804749.1 1252971 R 278197 CDS YP_804750.1 116493015 4417603 complement(1254098..1255585) 1 NC_008525.1 glucose-6-phosphate 1-dehydrogenase 1255585 4417603 PEPE_1267 Pediococcus pentosaceus ATCC 25745 glucose-6-phosphate 1-dehydrogenase YP_804750.1 1254098 R 278197 CDS YP_804751.1 116493016 4417604 complement(1255697..1256071) 1 NC_008525.1 protein translocase subunit yajC 1256071 4417604 PEPE_1268 Pediococcus pentosaceus ATCC 25745 protein translocase subunit yajC YP_804751.1 1255697 R 278197 CDS YP_804752.1 116493017 4417605 complement(1256137..1257279) 1 NC_008525.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1257279 tgt 4417605 tgt Pediococcus pentosaceus ATCC 25745 queuine tRNA-ribosyltransferase YP_804752.1 1256137 R 278197 CDS YP_804753.1 116493018 4417606 complement(1257303..1258337) 1 NC_008525.1 S-adenosylmethionine:tRNA-ribosyltransferase- isomerase (queuine synthetase) 1258337 4417606 PEPE_1270 Pediococcus pentosaceus ATCC 25745 S-adenosylmethionine:tRNA-ribosyltransferase- isomerase (queuine synthetase) YP_804753.1 1257303 R 278197 CDS YP_804754.1 116493019 4417607 complement(1258348..1259361) 1 NC_008525.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1259361 ruvB 4417607 ruvB Pediococcus pentosaceus ATCC 25745 Holliday junction DNA helicase RuvB YP_804754.1 1258348 R 278197 CDS YP_804755.1 116493020 4417608 complement(1259371..1259958) 1 NC_008525.1 Holliday junction DNA helicase subunit RuvA 1259958 4417608 PEPE_1272 Pediococcus pentosaceus ATCC 25745 Holliday junction DNA helicase subunit RuvA YP_804755.1 1259371 R 278197 CDS YP_804756.1 116493021 4417609 complement(1260006..1261943) 1 NC_008525.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 1261943 mutL 4417609 mutL Pediococcus pentosaceus ATCC 25745 DNA mismatch repair protein YP_804756.1 1260006 R 278197 CDS YP_804757.1 116493022 4417610 complement(1261955..1264576) 1 NC_008525.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1264576 4417610 PEPE_1274 Pediococcus pentosaceus ATCC 25745 DNA mismatch repair protein MutS YP_804757.1 1261955 R 278197 CDS YP_804758.1 116493023 4417611 complement(1264690..1266249) 1 NC_008525.1 HD superfamily hydrolase 1266249 4417611 PEPE_1275 Pediococcus pentosaceus ATCC 25745 HD superfamily hydrolase YP_804758.1 1264690 R 278197 CDS YP_804759.1 116493024 4417612 complement(1266418..1267476) 1 NC_008525.1 recombinase A 1267476 4417612 PEPE_1276 Pediococcus pentosaceus ATCC 25745 recombinase A YP_804759.1 1266418 R 278197 CDS YP_804760.1 116493025 4417613 complement(1267566..1268807) 1 NC_008525.1 competence/damage-inducible protein cinA 1268807 4417613 PEPE_1277 Pediococcus pentosaceus ATCC 25745 competence/damage-inducible protein cinA YP_804760.1 1267566 R 278197 CDS YP_804761.1 116493026 4417614 complement(1268917..1269498) 1 NC_008525.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1269498 4417614 PEPE_1278 Pediococcus pentosaceus ATCC 25745 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_804761.1 1268917 R 278197 CDS YP_804762.1 116493027 4417615 complement(1269511..1270380) 1 NC_008525.1 Xre-like DNA-binding protein 1270380 4417615 PEPE_1279 Pediococcus pentosaceus ATCC 25745 Xre-like DNA-binding protein YP_804762.1 1269511 R 278197 CDS YP_804763.1 116493028 4417054 complement(1270426..1271151) 1 NC_008525.1 3-oxoacyl-ACP reductase 1271151 4417054 PEPE_1280 Pediococcus pentosaceus ATCC 25745 3-oxoacyl-ACP reductase YP_804763.1 1270426 R 278197 CDS YP_804764.1 116493029 4417055 complement(1271148..1272440) 1 NC_008525.1 Zn-dependent peptidase 1272440 4417055 PEPE_1281 Pediococcus pentosaceus ATCC 25745 Zn-dependent peptidase YP_804764.1 1271148 R 278197 CDS YP_804765.1 116493030 4417056 complement(1272446..1273699) 1 NC_008525.1 Zn-dependent peptidase 1273699 4417056 PEPE_1282 Pediococcus pentosaceus ATCC 25745 Zn-dependent peptidase YP_804765.1 1272446 R 278197 CDS YP_804766.1 116493031 4417057 complement(1273767..1275194) 1 NC_008525.1 cardiolipin synthetase 2 1275194 4417057 PEPE_1283 Pediococcus pentosaceus ATCC 25745 cardiolipin synthetase 2 YP_804766.1 1273767 R 278197 CDS YP_804767.1 116493032 4417058 complement(1275275..1276096) 1 NC_008525.1 amino acid ABC transporter periplasmic protein 1276096 4417058 PEPE_1284 Pediococcus pentosaceus ATCC 25745 amino acid ABC transporter periplasmic protein YP_804767.1 1275275 R 278197 CDS YP_804768.1 116493033 4417059 complement(1276097..1276732) 1 NC_008525.1 ABC-type polar amino acid transport system, ATPase component 1276732 4417059 PEPE_1285 Pediococcus pentosaceus ATCC 25745 ABC-type polar amino acid transport system, ATPase component YP_804768.1 1276097 R 278197 CDS YP_804769.1 116493034 4417060 complement(1276747..1277397) 1 NC_008525.1 ABC-type amino acid transport system, permease component 1277397 4417060 PEPE_1286 Pediococcus pentosaceus ATCC 25745 ABC-type amino acid transport system, permease component YP_804769.1 1276747 R 278197 CDS YP_804770.1 116493035 4417061 complement(1277854..1278399) 1 NC_008525.1 rod shape-determining protein MreD 1278399 4417061 PEPE_1287 Pediococcus pentosaceus ATCC 25745 rod shape-determining protein MreD YP_804770.1 1277854 R 278197 CDS YP_804771.1 116493036 4417062 complement(1278409..1279254) 1 NC_008525.1 rod shape-determining protein MreC 1279254 4417062 PEPE_1288 Pediococcus pentosaceus ATCC 25745 rod shape-determining protein MreC YP_804771.1 1278409 R 278197 CDS YP_804772.1 116493037 4417063 complement(1279353..1280012) 1 NC_008525.1 DNA repair protein 1280012 4417063 PEPE_1289 Pediococcus pentosaceus ATCC 25745 DNA repair protein YP_804772.1 1279353 R 278197 CDS YP_804773.1 116493038 4417064 complement(1280055..1281329) 1 NC_008525.1 folylpolyglutamate synthase 1281329 4417064 PEPE_1290 Pediococcus pentosaceus ATCC 25745 folylpolyglutamate synthase YP_804773.1 1280055 R 278197 CDS YP_804774.1 116493039 4417065 complement(1281413..1284079) 1 NC_008525.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1284079 valS 4417065 valS Pediococcus pentosaceus ATCC 25745 valyl-tRNA synthetase YP_804774.1 1281413 R 278197 CDS YP_804775.1 116493040 4417066 complement(1284379..1284870) 1 NC_008525.1 thiol peroxidase (atypical 2-Cys peroxiredoxin) 1284870 4417066 PEPE_1292 Pediococcus pentosaceus ATCC 25745 thiol peroxidase (atypical 2-Cys peroxiredoxin) YP_804775.1 1284379 R 278197 CDS YP_804776.1 116493041 4417067 complement(1284947..1286164) 1 NC_008525.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 1286164 4417067 PEPE_1293 Pediococcus pentosaceus ATCC 25745 thiamine biosynthesis protein ThiI YP_804776.1 1284947 R 278197 CDS YP_804777.1 116493042 4417068 complement(1286173..1287327) 1 NC_008525.1 cysteine sulfinate desulfinase/cysteine desulfurase 1287327 4417068 PEPE_1294 Pediococcus pentosaceus ATCC 25745 cysteine sulfinate desulfinase/cysteine desulfurase YP_804777.1 1286173 R 278197 CDS YP_804778.1 116493043 4417069 complement(1287467..1289176) 1 NC_008525.1 acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation; septation ring formation regulator EzrA 1289176 4417069 PEPE_1295 Pediococcus pentosaceus ATCC 25745 septation ring formation regulator EzrA YP_804778.1 1287467 R 278197 CDS YP_804779.1 116493044 4417070 1289340..1289825 1 NC_008525.1 GAF domain-containing protein 1289825 4417070 PEPE_1296 Pediococcus pentosaceus ATCC 25745 GAF domain-containing protein YP_804779.1 1289340 D 278197 CDS YP_804780.1 116493045 4417552 1290008..1290616 1 NC_008525.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1290616 rpsD 4417552 rpsD Pediococcus pentosaceus ATCC 25745 30S ribosomal protein S4 YP_804780.1 1290008 D 278197 CDS YP_804781.1 116493046 4417553 1290680..1291957 1 NC_008525.1 recombination factor protein RarA 1291957 4417553 PEPE_1298 Pediococcus pentosaceus ATCC 25745 recombination factor protein RarA YP_804781.1 1290680 D 278197 CDS YP_804782.1 116493047 4417554 1292225..1292503 1 NC_008525.1 hypothetical protein 1292503 4417554 PEPE_1299 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804782.1 1292225 D 278197 CDS YP_804783.1 116493048 4417555 1292570..1293025 1 NC_008525.1 universal stress protein UspA-like nucleotide-binding protein 1293025 4417555 PEPE_1300 Pediococcus pentosaceus ATCC 25745 universal stress protein UspA-like nucleotide-binding protein YP_804783.1 1292570 D 278197 CDS YP_804784.1 116493049 4417556 complement(1293091..1293642) 1 NC_008525.1 DNA-3-methyladenine glycosylase I 1293642 4417556 PEPE_1301 Pediococcus pentosaceus ATCC 25745 DNA-3-methyladenine glycosylase I YP_804784.1 1293091 R 278197 CDS YP_804785.1 116493050 4417557 complement(1293691..1294746) 1 NC_008525.1 D-alanine--D-alanine ligase 1294746 4417557 PEPE_1302 Pediococcus pentosaceus ATCC 25745 D-alanine--D-alanine ligase YP_804785.1 1293691 R 278197 CDS YP_804786.1 116493051 4417558 complement(1294867..1295841) 1 NC_008525.1 hypothetical protein 1295841 4417558 PEPE_1303 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804786.1 1294867 R 278197 CDS YP_804787.1 116493052 4417559 1296010..1297431 1 NC_008525.1 amino acid transporter 1297431 4417559 PEPE_1304 Pediococcus pentosaceus ATCC 25745 amino acid transporter YP_804787.1 1296010 D 278197 CDS YP_804788.1 116493053 4417560 complement(1297479..1298234) 1 NC_008525.1 integral membrane protein 1298234 4417560 PEPE_1305 Pediococcus pentosaceus ATCC 25745 integral membrane protein YP_804788.1 1297479 R 278197 CDS YP_804789.1 116493054 4417561 complement(1298242..1299030) 1 NC_008525.1 ABC transporter, permease protein 1299030 4417561 PEPE_1306 Pediococcus pentosaceus ATCC 25745 ABC transporter, permease protein YP_804789.1 1298242 R 278197 CDS YP_804790.1 116493055 4417562 complement(1299023..1299889) 1 NC_008525.1 ABC-type multidrug transport system, ATPase component 1299889 4417562 PEPE_1307 Pediococcus pentosaceus ATCC 25745 ABC-type multidrug transport system, ATPase component YP_804790.1 1299023 R 278197 CDS YP_804791.1 116493056 4417563 complement(1299886..1300257) 1 NC_008525.1 GntR family transcriptional regulator 1300257 4417563 PEPE_1308 Pediococcus pentosaceus ATCC 25745 GntR family transcriptional regulator YP_804791.1 1299886 R 278197 CDS YP_804792.1 116493057 4417564 complement(1300424..1301239) 1 NC_008525.1 ABC-type metal ion transport system, periplasmic component/surface antigen 1301239 4417564 PEPE_1309 Pediococcus pentosaceus ATCC 25745 ABC-type metal ion transport system, periplasmic component/surface antigen YP_804792.1 1300424 R 278197 CDS YP_804793.1 116493058 4417565 complement(1301257..1301940) 1 NC_008525.1 ABC-type metal ion transport system, permease component 1301940 4417565 PEPE_1310 Pediococcus pentosaceus ATCC 25745 ABC-type metal ion transport system, permease component YP_804793.1 1301257 R 278197 CDS YP_804794.1 116493059 4417566 complement(1301930..1302967) 1 NC_008525.1 ABC-type metal ion transport system, ATPase component 1302967 4417566 PEPE_1311 Pediococcus pentosaceus ATCC 25745 ABC-type metal ion transport system, ATPase component YP_804794.1 1301930 R 278197 CDS YP_804795.1 116493060 4417567 complement(1303353..1304567) 1 NC_008525.1 cell division membrane protein 1304567 4417567 PEPE_1312 Pediococcus pentosaceus ATCC 25745 cell division membrane protein YP_804795.1 1303353 R 278197 CDS YP_804796.1 116493061 4417568 complement(1304583..1304804) 1 NC_008525.1 hypothetical protein 1304804 4417568 PEPE_1313 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804796.1 1304583 R 278197 CDS YP_804797.1 116493062 4417569 complement(1304813..1305070) 1 NC_008525.1 hypothetical protein 1305070 4417569 PEPE_1314 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804797.1 1304813 R 278197 CDS YP_804798.1 116493063 4417002 complement(1305085..1305309) 1 NC_008525.1 hypothetical protein 1305309 4417002 PEPE_1315 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804798.1 1305085 R 278197 CDS YP_804799.1 116493064 4417003 complement(1305427..1305846) 1 NC_008525.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 1305846 atpC 4417003 atpC Pediococcus pentosaceus ATCC 25745 F0F1 ATP synthase subunit epsilon YP_804799.1 1305427 R 278197 CDS YP_804800.1 116493065 4417004 complement(1305858..1307267) 1 NC_008525.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 1307267 4417004 PEPE_1317 Pediococcus pentosaceus ATCC 25745 F0F1 ATP synthase subunit beta YP_804800.1 1305858 R 278197 CDS YP_804801.1 116493066 4417005 complement(1307292..1308212) 1 NC_008525.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 1308212 4417005 PEPE_1318 Pediococcus pentosaceus ATCC 25745 F0F1 ATP synthase subunit gamma YP_804801.1 1307292 R 278197 CDS YP_804802.1 116493067 4417006 complement(1308250..1309767) 1 NC_008525.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 1309767 4417006 PEPE_1319 Pediococcus pentosaceus ATCC 25745 F0F1 ATP synthase subunit alpha YP_804802.1 1308250 R 278197 CDS YP_804803.1 116493068 4417007 complement(1309797..1310339) 1 NC_008525.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 1310339 4417007 PEPE_1320 Pediococcus pentosaceus ATCC 25745 F0F1 ATP synthase subunit delta YP_804803.1 1309797 R 278197 CDS YP_804804.1 116493069 4417008 complement(1310336..1310857) 1 NC_008525.1 F0F1-type ATP synthase, subunit b 1310857 4417008 PEPE_1321 Pediococcus pentosaceus ATCC 25745 F0F1-type ATP synthase, subunit b YP_804804.1 1310336 R 278197 CDS YP_804805.1 116493070 4417009 complement(1310902..1311114) 1 NC_008525.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 1311114 4417009 PEPE_1322 Pediococcus pentosaceus ATCC 25745 F0F1 ATP synthase subunit C YP_804805.1 1310902 R 278197 CDS YP_804806.1 116493071 4417010 complement(1311147..1311863) 1 NC_008525.1 F0F1-type ATP synthase, subunit a 1311863 4417010 PEPE_1323 Pediococcus pentosaceus ATCC 25745 F0F1-type ATP synthase, subunit a YP_804806.1 1311147 R 278197 CDS YP_804807.1 116493072 4417011 complement(1312137..1314749) 1 NC_008525.1 peptide ABC transporter permease 1314749 4417011 PEPE_1324 Pediococcus pentosaceus ATCC 25745 peptide ABC transporter permease YP_804807.1 1312137 R 278197 CDS YP_804808.1 116493073 4417012 complement(1314759..1315460) 1 NC_008525.1 peptide ABC transporter ATPase 1315460 4417012 PEPE_1325 Pediococcus pentosaceus ATCC 25745 peptide ABC transporter ATPase YP_804808.1 1314759 R 278197 CDS YP_804809.1 116493074 4417013 complement(1315566..1316195) 1 NC_008525.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 1316195 upp 4417013 upp Pediococcus pentosaceus ATCC 25745 uracil phosphoribosyltransferase YP_804809.1 1315566 R 278197 CDS YP_804810.1 116493075 4417014 complement(1316265..1317497) 1 NC_008525.1 serine hydroxymethyltransferase 1317497 4417014 PEPE_1327 Pediococcus pentosaceus ATCC 25745 serine hydroxymethyltransferase YP_804810.1 1316265 R 278197 CDS YP_804811.1 116493076 4417015 complement(1317511..1318533) 1 NC_008525.1 translation factor SUA5 1318533 4417015 PEPE_1328 Pediococcus pentosaceus ATCC 25745 translation factor SUA5 YP_804811.1 1317511 R 278197 CDS YP_804812.1 116493077 4417016 complement(1318543..1319394) 1 NC_008525.1 methylase of polypeptide chain release factor 1319394 4417016 PEPE_1329 Pediococcus pentosaceus ATCC 25745 methylase of polypeptide chain release factor YP_804812.1 1318543 R 278197 CDS YP_804813.1 116493078 4417017 complement(1319387..1320466) 1 NC_008525.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1320466 prfA 4417017 prfA Pediococcus pentosaceus ATCC 25745 peptide chain release factor 1 YP_804813.1 1319387 R 278197 CDS YP_804814.1 116493079 4417018 complement(1320471..1321064) 1 NC_008525.1 thymidine kinase 1321064 4417018 PEPE_1331 Pediococcus pentosaceus ATCC 25745 thymidine kinase YP_804814.1 1320471 R 278197 CDS YP_804815.1 116493080 4417905 1321218..1322564 1 NC_008525.1 UDP-N-acetylmuramyl tripeptide synthase 1322564 4417905 PEPE_1332 Pediococcus pentosaceus ATCC 25745 UDP-N-acetylmuramyl tripeptide synthase YP_804815.1 1321218 D 278197 CDS YP_804816.1 116493081 4417906 1322566..1323270 1 NC_008525.1 glutamine amidotransferase 1323270 4417906 PEPE_1333 Pediococcus pentosaceus ATCC 25745 glutamine amidotransferase YP_804816.1 1322566 D 278197 CDS YP_804817.1 116493082 4417907 complement(1323318..1324286) 1 NC_008525.1 phosphomannose isomerase 1324286 4417907 PEPE_1334 Pediococcus pentosaceus ATCC 25745 phosphomannose isomerase YP_804817.1 1323318 R 278197 CDS YP_804818.1 116493083 4417908 complement(1324360..1325358) 1 NC_008525.1 Beta-lactamase class C related penicillin binding protein 1325358 4417908 PEPE_1335 Pediococcus pentosaceus ATCC 25745 Beta-lactamase class C related penicillin binding protein YP_804818.1 1324360 R 278197 CDS YP_804819.1 116493084 4417909 complement(1325459..1327339) 1 NC_008525.1 ABC-type multidrug transport system, ATPase and permease component 1327339 4417909 PEPE_1336 Pediococcus pentosaceus ATCC 25745 ABC-type multidrug transport system, ATPase and permease component YP_804819.1 1325459 R 278197 CDS YP_804820.1 116493085 4417910 complement(1327332..1329071) 1 NC_008525.1 ABC-type multidrug transport system, ATPase and permease component 1329071 4417910 PEPE_1337 Pediococcus pentosaceus ATCC 25745 ABC-type multidrug transport system, ATPase and permease component YP_804820.1 1327332 R 278197 CDS YP_804821.1 116493086 4417911 complement(1329074..1329724) 1 NC_008525.1 transcriptional regulator 1329724 4417911 PEPE_1338 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_804821.1 1329074 R 278197 CDS YP_804822.1 116493087 4417912 1329847..1330188 1 NC_008525.1 hypothetical protein 1330188 4417912 PEPE_1339 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804822.1 1329847 D 278197 CDS YP_804823.1 116493088 4417913 1330203..1330667 1 NC_008525.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 1330667 greA 4417913 greA Pediococcus pentosaceus ATCC 25745 transcription elongation factor GreA YP_804823.1 1330203 D 278197 CDS YP_804824.1 116493089 4417916 complement(1330897..1330977) 1 NC_008525.1 hypothetical protein 1330977 4417916 PEPE_1343 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804824.1 1330897 R 278197 CDS YP_804825.1 116493090 4417917 complement(1330956..1331252) 1 NC_008525.1 rhodanese-related sulfurtransferase 1331252 4417917 PEPE_1344 Pediococcus pentosaceus ATCC 25745 rhodanese-related sulfurtransferase YP_804825.1 1330956 R 278197 CDS YP_804826.1 116493091 4417918 complement(1331400..1332221) 1 NC_008525.1 membrane protease family stomatin/prohibitin-like protein 1332221 4417918 PEPE_1345 Pediococcus pentosaceus ATCC 25745 membrane protease family stomatin/prohibitin-like protein YP_804826.1 1331400 R 278197 CDS YP_804827.1 116493092 4417919 complement(1332234..1332563) 1 NC_008525.1 hypothetical protein 1332563 4417919 PEPE_1346 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804827.1 1332234 R 278197 CDS YP_804828.1 116493093 4417920 complement(1332690..1333994) 1 NC_008525.1 flavoprotein 1333994 4417920 PEPE_1347 Pediococcus pentosaceus ATCC 25745 flavoprotein YP_804828.1 1332690 R 278197 CDS YP_804829.1 116493094 4416963 complement(1333991..1334623) 1 NC_008525.1 flavoprotein 1334623 4416963 PEPE_1348 Pediococcus pentosaceus ATCC 25745 flavoprotein YP_804829.1 1333991 R 278197 CDS YP_804830.1 116493095 4416964 complement(1334657..1335598) 1 NC_008525.1 thiamine biosynthesis membrane-associated lipoprotein 1335598 4416964 PEPE_1349 Pediococcus pentosaceus ATCC 25745 thiamine biosynthesis membrane-associated lipoprotein YP_804830.1 1334657 R 278197 CDS YP_804831.1 116493096 4416965 complement(1335739..1337088) 1 NC_008525.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 1337088 pgi 4416965 pgi Pediococcus pentosaceus ATCC 25745 glucose-6-phosphate isomerase YP_804831.1 1335739 R 278197 CDS YP_804832.1 116493097 4416966 complement(1337389..1338258) 1 NC_008525.1 putative glucose uptake permease 1338258 4416966 PEPE_1351 Pediococcus pentosaceus ATCC 25745 putative glucose uptake permease YP_804832.1 1337389 R 278197 CDS YP_804833.1 116493098 4416967 1338606..1339469 1 NC_008525.1 fructose-bisphosphate aldolase 1339469 4416967 PEPE_1352 Pediococcus pentosaceus ATCC 25745 fructose-bisphosphate aldolase YP_804833.1 1338606 D 278197 CDS YP_804834.1 116493099 4416968 complement(1339494..1340942) 1 NC_008525.1 Signal transduction histidine kinase 1340942 4416968 PEPE_1353 Pediococcus pentosaceus ATCC 25745 Signal transduction histidine kinase YP_804834.1 1339494 R 278197 CDS YP_804835.1 116493100 4416969 complement(1340948..1341670) 1 NC_008525.1 DNA-binding response regulator 1341670 4416969 PEPE_1354 Pediococcus pentosaceus ATCC 25745 DNA-binding response regulator YP_804835.1 1340948 R 278197 CDS YP_804836.1 116493101 4416970 complement(1341812..1342489) 1 NC_008525.1 aggregation promoting factor-like surface protein 1342489 4416970 PEPE_1355 Pediococcus pentosaceus ATCC 25745 aggregation promoting factor-like surface protein YP_804836.1 1341812 R 278197 CDS YP_804837.1 116493102 4416971 complement(1342809..1343495) 1 NC_008525.1 hypothetical protein 1343495 4416971 PEPE_1356 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804837.1 1342809 R 278197 CDS YP_804838.1 116493103 4416972 complement(1343804..1344301) 1 NC_008525.1 sortase related acyltransferase 1344301 4416972 PEPE_1357 Pediococcus pentosaceus ATCC 25745 sortase related acyltransferase YP_804838.1 1343804 R 278197 CDS YP_804839.1 116493104 4416973 1344470..1345618 1 NC_008525.1 hypothetical protein 1345618 4416973 PEPE_1358 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804839.1 1344470 D 278197 CDS YP_804840.1 116493105 4416974 complement(1345666..1346043) 1 NC_008525.1 hypothetical protein 1346043 4416974 PEPE_1359 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804840.1 1345666 R 278197 CDS YP_804841.1 116493106 4416975 complement(1346109..1347461) 1 NC_008525.1 H+/gluconate symporter related permease 1347461 4416975 PEPE_1360 Pediococcus pentosaceus ATCC 25745 H+/gluconate symporter related permease YP_804841.1 1346109 R 278197 CDS YP_804842.1 116493107 4416976 complement(1347533..1349095) 1 NC_008525.1 gluconate kinase 1349095 4416976 PEPE_1361 Pediococcus pentosaceus ATCC 25745 gluconate kinase YP_804842.1 1347533 R 278197 CDS YP_804843.1 116493108 4416977 complement(1349110..1350009) 1 NC_008525.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase-like protein 1350009 4416977 PEPE_1362 Pediococcus pentosaceus ATCC 25745 6-phosphogluconate dehydrogenase-like protein YP_804843.1 1349110 R 278197 CDS YP_804844.1 116493109 4416978 1350158..1350991 1 NC_008525.1 transcriptional regulator 1350991 4416978 PEPE_1363 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_804844.1 1350158 D 278197 CDS YP_804845.1 116493110 4416980 complement(1352042..1352929) 1 NC_008525.1 restriction endonuclease 1352929 4416980 PEPE_1365 Pediococcus pentosaceus ATCC 25745 restriction endonuclease YP_804845.1 1352042 R 278197 CDS YP_804846.1 116493111 4416981 complement(1353073..1354440) 1 NC_008525.1 tRNA (uracil-5-)-methyltransferase related enzyme 1354440 4416981 PEPE_1366 Pediococcus pentosaceus ATCC 25745 tRNA (uracil-5-)-methyltransferase related enzyme YP_804846.1 1353073 R 278197 CDS YP_804847.1 116493112 4416982 complement(1354559..1355560) 1 NC_008525.1 similar to YegS from E. coli; putative lipid kinase 1355560 4416982 PEPE_1367 Pediococcus pentosaceus ATCC 25745 putative lipid kinase YP_804847.1 1354559 R 278197 CDS YP_804848.1 116493113 4416983 complement(1355588..1357015) 1 NC_008525.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 1357015 gatB 4416983 gatB Pediococcus pentosaceus ATCC 25745 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_804848.1 1355588 R 278197 CDS YP_804849.1 116493114 4416984 complement(1357015..1358475) 1 NC_008525.1 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A 1358475 4416984 PEPE_1369 Pediococcus pentosaceus ATCC 25745 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A YP_804849.1 1357015 R 278197 CDS YP_804850.1 116493115 4416985 complement(1358475..1358789) 1 NC_008525.1 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C 1358789 4416985 PEPE_1370 Pediococcus pentosaceus ATCC 25745 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C YP_804850.1 1358475 R 278197 CDS YP_804851.1 116493116 4416986 complement(1358809..1359966) 1 NC_008525.1 hypothetical protein 1359966 4416986 PEPE_1371 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804851.1 1358809 R 278197 CDS YP_804852.1 116493117 4416987 complement(1360035..1362308) 1 NC_008525.1 ATP-dependent DNA helicase PcrA 1362308 4416987 PEPE_1372 Pediococcus pentosaceus ATCC 25745 ATP-dependent DNA helicase PcrA YP_804852.1 1360035 R 278197 CDS YP_804853.1 116493118 4416988 complement(1362401..1363540) 1 NC_008525.1 phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) 1363540 4416988 PEPE_1373 Pediococcus pentosaceus ATCC 25745 phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) YP_804853.1 1362401 R 278197 CDS YP_804854.1 116493119 4416989 complement(1363579..1364151) 1 NC_008525.1 adenine/guanine phosphoribosyltransferase-like protein 1364151 4416989 PEPE_1374 Pediococcus pentosaceus ATCC 25745 adenine/guanine phosphoribosyltransferase-like protein YP_804854.1 1363579 R 278197 CDS YP_804855.1 116493120 4416990 complement(1364161..1364691) 1 NC_008525.1 N-acetylmuramidase 1364691 4416990 PEPE_1375 Pediococcus pentosaceus ATCC 25745 N-acetylmuramidase YP_804855.1 1364161 R 278197 CDS YP_804856.1 116493121 4416991 complement(1364899..1365522) 1 NC_008525.1 hypothetical protein 1365522 4416991 PEPE_1376 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804856.1 1364899 R 278197 CDS YP_804857.1 116493122 4416992 1365596..1366543 1 NC_008525.1 D-3-phosphoglycerate dehydrogenase 1366543 4416992 PEPE_1377 Pediococcus pentosaceus ATCC 25745 D-3-phosphoglycerate dehydrogenase YP_804857.1 1365596 D 278197 CDS YP_804858.1 116493123 4416993 complement(1366612..1368468) 1 NC_008525.1 hypothetical protein 1368468 4416993 PEPE_1378 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804858.1 1366612 R 278197 CDS YP_804859.1 116493124 4416994 1368746..1371598 1 NC_008525.1 superfamily II DNA/RNA helicase 1371598 4416994 PEPE_1379 Pediococcus pentosaceus ATCC 25745 superfamily II DNA/RNA helicase YP_804859.1 1368746 D 278197 CDS YP_804860.1 116493125 4416995 1371653..1372225 1 NC_008525.1 hypothetical protein 1372225 4416995 PEPE_1380 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804860.1 1371653 D 278197 CDS YP_804861.1 116493126 4416996 1372363..1372800 1 NC_008525.1 hypothetical protein 1372800 4416996 PEPE_1381 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804861.1 1372363 D 278197 CDS YP_804862.1 116493127 4416997 complement(1372872..1373354) 1 NC_008525.1 DNA-binding ferritin-like protein (oxidative damage protectant) 1373354 4416997 PEPE_1382 Pediococcus pentosaceus ATCC 25745 DNA-binding ferritin-like protein (oxidative damage protectant) YP_804862.1 1372872 R 278197 CDS YP_804863.1 116493128 4417801 complement(1373624..1373890) 1 NC_008525.1 hypothetical protein 1373890 4417801 PEPE_1383 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804863.1 1373624 R 278197 CDS YP_804864.1 116493129 4417802 1374048..1374254 1 NC_008525.1 XRE family transcriptional regulator 1374254 4417802 PEPE_1384 Pediococcus pentosaceus ATCC 25745 XRE family transcriptional regulator YP_804864.1 1374048 D 278197 CDS YP_804865.1 116493130 4417803 complement(1374850..1375242) 1 NC_008525.1 30S ribosomal protein S9 1375242 4417803 PEPE_1385 Pediococcus pentosaceus ATCC 25745 30S ribosomal protein S9 YP_804865.1 1374850 R 278197 CDS YP_804866.1 116493131 4417804 complement(1375257..1375700) 1 NC_008525.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 1375700 rplM 4417804 rplM Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L13 YP_804866.1 1375257 R 278197 CDS YP_804867.1 116493132 4417805 complement(1375826..1376572) 1 NC_008525.1 pseudouridylate synthase 1376572 4417805 PEPE_1387 Pediococcus pentosaceus ATCC 25745 pseudouridylate synthase YP_804867.1 1375826 R 278197 CDS YP_804868.1 116493133 4417806 complement(1376575..1377375) 1 NC_008525.1 ABC-type cobalt transport system, permease component CbiQ related transporter 1377375 4417806 PEPE_1388 Pediococcus pentosaceus ATCC 25745 ABC-type cobalt transport system, permease component CbiQ related transporter YP_804868.1 1376575 R 278197 CDS YP_804869.1 116493134 4417807 complement(1377368..1378051) 1 NC_008525.1 ABC-type cobalt transport system, ATPase component 1378051 4417807 PEPE_1389 Pediococcus pentosaceus ATCC 25745 ABC-type cobalt transport system, ATPase component YP_804869.1 1377368 R 278197 CDS YP_804870.1 116493135 4417808 complement(1378213..1379055) 1 NC_008525.1 ABC-type cobalt transport system, ATPase component 1379055 4417808 PEPE_1390 Pediococcus pentosaceus ATCC 25745 ABC-type cobalt transport system, ATPase component YP_804870.1 1378213 R 278197 CDS YP_804871.1 116493136 4417809 complement(1379240..1379623) 1 NC_008525.1 50S ribosomal protein L17 1379623 4417809 PEPE_1391 Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L17 YP_804871.1 1379240 R 278197 CDS YP_804872.1 116493137 4417810 complement(1379645..1380589) 1 NC_008525.1 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 1380589 4417810 PEPE_1392 Pediococcus pentosaceus ATCC 25745 DNA-directed RNA polymerase, alpha subunit/40 kD subunit YP_804872.1 1379645 R 278197 CDS YP_804873.1 116493138 4417811 complement(1380673..1381062) 1 NC_008525.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 1381062 4417811 PEPE_1393 Pediococcus pentosaceus ATCC 25745 30S ribosomal protein S11 YP_804873.1 1380673 R 278197 CDS YP_804874.1 116493139 4417812 complement(1381083..1381448) 1 NC_008525.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 1381448 rpsM 4417812 rpsM Pediococcus pentosaceus ATCC 25745 30S ribosomal protein S13 YP_804874.1 1381083 R 278197 CDS YP_804875.1 116493140 4417813 complement(1381473..1381592) 1 NC_008525.1 50S ribosomal protein L36 1381592 4417813 PEPE_1395 Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L36 YP_804875.1 1381473 R 278197 CDS YP_804876.1 116493141 4417814 complement(1381620..1381838) 1 NC_008525.1 IF-1; stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1381838 infA 4417814 infA Pediococcus pentosaceus ATCC 25745 translation initiation factor IF-1 YP_804876.1 1381620 R 278197 CDS YP_804877.1 116493142 4417815 complement(1381990..1382649) 1 NC_008525.1 adenylate kinase 1382649 4417815 PEPE_1397 Pediococcus pentosaceus ATCC 25745 adenylate kinase YP_804877.1 1381990 R 278197 CDS YP_804878.1 116493143 4417816 complement(1382682..1383980) 1 NC_008525.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 1383980 secY 4417816 secY Pediococcus pentosaceus ATCC 25745 preprotein translocase subunit SecY YP_804878.1 1382682 R 278197 CDS YP_804879.1 116493144 4417817 complement(1383980..1384414) 1 NC_008525.1 50S ribosomal protein L15 1384414 4417817 PEPE_1399 Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L15 YP_804879.1 1383980 R 278197 CDS YP_804880.1 116493145 4417722 complement(1384442..1384624) 1 NC_008525.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 1384624 rpmD 4417722 rpmD Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L30 YP_804880.1 1384442 R 278197 CDS YP_804881.1 116493146 4417723 complement(1384638..1385141) 1 NC_008525.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 1385141 rpsE 4417723 rpsE Pediococcus pentosaceus ATCC 25745 30S ribosomal protein S5 YP_804881.1 1384638 R 278197 CDS YP_804882.1 116493147 4417724 complement(1385163..1385519) 1 NC_008525.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 1385519 rplR 4417724 rplR Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L18 YP_804882.1 1385163 R 278197 CDS YP_804883.1 116493148 4417725 complement(1385572..1386108) 1 NC_008525.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 1386108 rplF 4417725 rplF Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L6 YP_804883.1 1385572 R 278197 CDS YP_804884.1 116493149 4417726 complement(1386134..1386532) 1 NC_008525.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 1386532 rpsH 4417726 rpsH Pediococcus pentosaceus ATCC 25745 30S ribosomal protein S8 YP_804884.1 1386134 R 278197 CDS YP_804885.1 116493150 4417727 complement(1386568..1386753) 1 NC_008525.1 SSU ribosomal protein S14P 1386753 4417727 PEPE_1405 Pediococcus pentosaceus ATCC 25745 SSU ribosomal protein S14P YP_804885.1 1386568 R 278197 CDS YP_804886.1 116493151 4417728 complement(1386772..1387314) 1 NC_008525.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 1387314 rplE 4417728 rplE Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L5 YP_804886.1 1386772 R 278197 CDS YP_804887.1 116493152 4417729 complement(1387342..1387653) 1 NC_008525.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 1387653 rplX 4417729 rplX Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L24 YP_804887.1 1387342 R 278197 CDS YP_804888.1 116493153 4417730 complement(1387686..1388054) 1 NC_008525.1 50S ribosomal protein L14 1388054 4417730 PEPE_1408 Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L14 YP_804888.1 1387686 R 278197 CDS YP_804889.1 116493154 4417731 complement(1388101..1388367) 1 NC_008525.1 30S ribosomal protein S17 1388367 4417731 PEPE_1409 Pediococcus pentosaceus ATCC 25745 30S ribosomal protein S17 YP_804889.1 1388101 R 278197 CDS YP_804890.1 116493155 4417732 complement(1388394..1388588) 1 NC_008525.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 1388588 4417732 PEPE_1410 Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L29 YP_804890.1 1388394 R 278197 CDS YP_804891.1 116493156 4417733 complement(1388578..1389012) 1 NC_008525.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 1389012 rplP 4417733 rplP Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L16 YP_804891.1 1388578 R 278197 CDS YP_804892.1 116493157 4417734 complement(1389015..1389686) 1 NC_008525.1 30S ribosomal protein S3 1389686 4417734 PEPE_1412 Pediococcus pentosaceus ATCC 25745 30S ribosomal protein S3 YP_804892.1 1389015 R 278197 CDS YP_804893.1 116493158 4417735 complement(1389690..1390046) 1 NC_008525.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 1390046 rplV 4417735 rplV Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L22 YP_804893.1 1389690 R 278197 CDS YP_804894.1 116493159 4417736 complement(1390059..1390340) 1 NC_008525.1 SSU ribosomal protein S19P 1390340 4417736 PEPE_1414 Pediococcus pentosaceus ATCC 25745 SSU ribosomal protein S19P YP_804894.1 1390059 R 278197 CDS YP_804895.1 116493160 4417737 complement(1390367..1391215) 1 NC_008525.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 1391215 rplB 4417737 rplB Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L2 YP_804895.1 1390367 R 278197 CDS YP_804896.1 116493161 4417738 complement(1391238..1391525) 1 NC_008525.1 50S ribosomal protein L23 1391525 4417738 PEPE_1416 Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L23 YP_804896.1 1391238 R 278197 CDS YP_804897.1 116493162 4417739 complement(1391525..1392148) 1 NC_008525.1 50S ribosomal protein L4P 1392148 4417739 PEPE_1417 Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L4P YP_804897.1 1391525 R 278197 CDS YP_804898.1 116493163 4417287 complement(1392167..1392799) 1 NC_008525.1 50S ribosomal protein L3P 1392799 4417287 PEPE_1418 Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L3P YP_804898.1 1392167 R 278197 CDS YP_804899.1 116493164 4417288 complement(1392826..1393134) 1 NC_008525.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 1393134 rpsJ 4417288 rpsJ Pediococcus pentosaceus ATCC 25745 30S ribosomal protein S10 YP_804899.1 1392826 R 278197 CDS YP_804900.1 116493165 4417289 complement(1393420..1395513) 1 NC_008525.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 1395513 4417289 PEPE_1420 Pediococcus pentosaceus ATCC 25745 elongation factor G YP_804900.1 1393420 R 278197 CDS YP_804901.1 116493166 4417290 complement(1395636..1396106) 1 NC_008525.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 1396106 4417290 PEPE_1421 Pediococcus pentosaceus ATCC 25745 30S ribosomal protein S7 YP_804901.1 1395636 R 278197 CDS YP_804902.1 116493167 4417291 complement(1396122..1396535) 1 NC_008525.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 1396535 rpsL 4417291 rpsL Pediococcus pentosaceus ATCC 25745 30S ribosomal protein S12 YP_804902.1 1396122 R 278197 CDS YP_804903.1 116493168 4417293 1397584..1398534 1 NC_008525.1 inosine-uridine nucleoside N-ribohydrolase 1398534 4417293 PEPE_1424 Pediococcus pentosaceus ATCC 25745 inosine-uridine nucleoside N-ribohydrolase YP_804903.1 1397584 D 278197 CDS YP_804904.1 116493169 4417294 complement(1398622..1402260) 1 NC_008525.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 1402260 4417294 PEPE_1425 Pediococcus pentosaceus ATCC 25745 DNA-directed RNA polymerase subunit beta' YP_804904.1 1398622 R 278197 CDS YP_804905.1 116493170 4417295 complement(1402290..1405898) 1 NC_008525.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 1405898 rpoB 4417295 rpoB Pediococcus pentosaceus ATCC 25745 DNA-directed RNA polymerase subunit beta YP_804905.1 1402290 R 278197 CDS YP_804906.1 116493171 4417296 complement(1406138..1408603) 1 NC_008525.1 ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones 1408603 4417296 PEPE_1427 Pediococcus pentosaceus ATCC 25745 ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones YP_804906.1 1406138 R 278197 CDS YP_804907.1 116493172 4417297 complement(1408631..1409095) 1 NC_008525.1 transcriptional repressor of class III stress genes 1409095 4417297 PEPE_1428 Pediococcus pentosaceus ATCC 25745 transcriptional repressor of class III stress genes YP_804907.1 1408631 R 278197 CDS YP_804908.1 116493173 4417304 1409933..1410022 1 NC_008525.1 hypothetical protein 1410022 4417304 PEPE_1435 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804908.1 1409933 D 278197 CDS YP_804909.1 116493174 4417305 complement(1410111..1411391) 1 NC_008525.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1411391 4417305 PEPE_1436 Pediococcus pentosaceus ATCC 25745 seryl-tRNA synthetase YP_804909.1 1410111 R 278197 CDS YP_804910.1 116493175 4417306 complement(1411670..1412302) 1 NC_008525.1 deoxynucleoside kinase 1412302 4417306 PEPE_1437 Pediococcus pentosaceus ATCC 25745 deoxynucleoside kinase YP_804910.1 1411670 R 278197 CDS YP_804911.1 116493176 4417307 complement(1412383..1413834) 1 NC_008525.1 amino acid transporter 1413834 4417307 PEPE_1438 Pediococcus pentosaceus ATCC 25745 amino acid transporter YP_804911.1 1412383 R 278197 CDS YP_804912.1 116493177 4417308 complement(1414155..1414655) 1 NC_008525.1 acetyltransferase 1414655 4417308 PEPE_1439 Pediococcus pentosaceus ATCC 25745 acetyltransferase YP_804912.1 1414155 R 278197 CDS YP_804913.1 116493178 4417309 1414745..1415542 1 NC_008525.1 esterase/lipase 1415542 4417309 PEPE_1440 Pediococcus pentosaceus ATCC 25745 esterase/lipase YP_804913.1 1414745 D 278197 CDS YP_804914.1 116493179 4417310 1415679..1416998 1 NC_008525.1 transcriptional regulator 1416998 4417310 PEPE_1441 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_804914.1 1415679 D 278197 CDS YP_804915.1 116493180 4417311 complement(1417059..1417931) 1 NC_008525.1 fructokinase / branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase 1417931 4417311 PEPE_1442 Pediococcus pentosaceus ATCC 25745 fructokinase / branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase YP_804915.1 1417059 R 278197 CDS YP_804916.1 116493181 4417312 complement(1418106..1418597) 1 NC_008525.1 hypothetical protein 1418597 4417312 PEPE_1443 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804916.1 1418106 R 278197 CDS YP_804917.1 116493182 4417313 complement(1418613..1419359) 1 NC_008525.1 hypothetical protein 1419359 4417313 PEPE_1444 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804917.1 1418613 R 278197 CDS YP_804918.1 116493183 4417314 complement(1419492..1419692) 1 NC_008525.1 cold-shock DNA-binding protein family protein 1419692 4417314 PEPE_1445 Pediococcus pentosaceus ATCC 25745 cold-shock DNA-binding protein family protein YP_804918.1 1419492 R 278197 CDS YP_804919.1 116493184 4417269 complement(1420042..1420725) 1 NC_008525.1 membrane-associated phospholipid phosphatase 1420725 4417269 PEPE_1446 Pediococcus pentosaceus ATCC 25745 membrane-associated phospholipid phosphatase YP_804919.1 1420042 R 278197 CDS YP_804920.1 116493185 4417270 complement(1420750..1421397) 1 NC_008525.1 HD superfamily hydrolase 1421397 4417270 PEPE_1447 Pediococcus pentosaceus ATCC 25745 HD superfamily hydrolase YP_804920.1 1420750 R 278197 CDS YP_804921.1 116493186 4417271 complement(1421394..1422956) 1 NC_008525.1 HD superfamily hydrolase 1422956 4417271 PEPE_1448 Pediococcus pentosaceus ATCC 25745 HD superfamily hydrolase YP_804921.1 1421394 R 278197 CDS YP_804922.1 116493187 4417272 complement(1423095..1423508) 1 NC_008525.1 hypothetical protein 1423508 4417272 PEPE_1449 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804922.1 1423095 R 278197 CDS YP_804923.1 116493188 4417273 complement(1423539..1424423) 1 NC_008525.1 pseudouridylate synthase, 23S RNA-specific 1424423 4417273 PEPE_1450 Pediococcus pentosaceus ATCC 25745 pseudouridylate synthase, 23S RNA-specific YP_804923.1 1423539 R 278197 CDS YP_804924.1 116493189 4417274 1424716..1425270 1 NC_008525.1 hypothetical protein 1425270 4417274 PEPE_1451 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804924.1 1424716 D 278197 CDS YP_804925.1 116493190 4417275 1425343..1425489 1 NC_008525.1 hypothetical protein 1425489 4417275 PEPE_1452 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804925.1 1425343 D 278197 CDS YP_804926.1 116493191 4417276 complement(1425538..1426326) 1 NC_008525.1 hypothetical protein 1426326 4417276 PEPE_1453 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804926.1 1425538 R 278197 CDS YP_804927.1 116493192 4417277 complement(1426431..1427741) 1 NC_008525.1 xanthine/uracil permease 1427741 4417277 PEPE_1454 Pediococcus pentosaceus ATCC 25745 xanthine/uracil permease YP_804927.1 1426431 R 278197 CDS YP_804928.1 116493193 4417278 1427922..1429328 1 NC_008525.1 dipeptidase A 1429328 4417278 PEPE_1455 Pediococcus pentosaceus ATCC 25745 dipeptidase A YP_804928.1 1427922 D 278197 CDS YP_804929.1 116493194 4417279 complement(1429428..1429781) 1 NC_008525.1 hypothetical protein 1429781 4417279 PEPE_1456 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804929.1 1429428 R 278197 CDS YP_804930.1 116493195 4417280 complement(1430335..1431594) 1 NC_008525.1 phosphoribosylamine--glycine ligase 1431594 4417280 PEPE_1457 Pediococcus pentosaceus ATCC 25745 phosphoribosylamine--glycine ligase YP_804930.1 1430335 R 278197 CDS YP_804931.1 116493196 4417281 complement(1431608..1433143) 1 NC_008525.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 1433143 purH 4417281 purH Pediococcus pentosaceus ATCC 25745 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_804931.1 1431608 R 278197 CDS YP_804932.1 116493197 4417282 complement(1433158..1433739) 1 NC_008525.1 phosphoribosylglycinamide formyltransferase 1433739 4417282 PEPE_1459 Pediococcus pentosaceus ATCC 25745 phosphoribosylglycinamide formyltransferase YP_804932.1 1433158 R 278197 CDS YP_804933.1 116493198 4417283 complement(1433736..1434785) 1 NC_008525.1 phosphoribosylformylglycinamidine cyclo-ligase 1434785 4417283 PEPE_1460 Pediococcus pentosaceus ATCC 25745 phosphoribosylformylglycinamidine cyclo-ligase YP_804933.1 1433736 R 278197 CDS YP_804934.1 116493199 4417284 complement(1434785..1436254) 1 NC_008525.1 amidophosphoribosyltransferase 1436254 4417284 PEPE_1461 Pediococcus pentosaceus ATCC 25745 amidophosphoribosyltransferase YP_804934.1 1434785 R 278197 CDS YP_804935.1 116493200 4417285 complement(1436239..1438443) 1 NC_008525.1 phosphoribosylformylglycinamidine synthase domain-containing protein 1438443 4417285 PEPE_1462 Pediococcus pentosaceus ATCC 25745 phosphoribosylformylglycinamidine synthase domain-containing protein YP_804935.1 1436239 R 278197 CDS YP_804936.1 116493201 4417286 complement(1438464..1439138) 1 NC_008525.1 phosphoribosylformylglycinamidine synthase domain-containing protein 1439138 4417286 PEPE_1463 Pediococcus pentosaceus ATCC 25745 phosphoribosylformylglycinamidine synthase domain-containing protein YP_804936.1 1438464 R 278197 CDS YP_804937.1 116493202 4417315 complement(1439141..1439395) 1 NC_008525.1 phosphoribosylformylglycinamidine (FGAM) synthase, PurS component 1439395 4417315 PEPE_1464 Pediococcus pentosaceus ATCC 25745 phosphoribosylformylglycinamidine (FGAM) synthase, PurS component YP_804937.1 1439141 R 278197 CDS YP_804938.1 116493203 4417316 complement(1439388..1440116) 1 NC_008525.1 phosphoribosylaminoimidazole-succinocarboxamide synthase 1440116 4417316 PEPE_1465 Pediococcus pentosaceus ATCC 25745 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_804938.1 1439388 R 278197 CDS YP_804939.1 116493204 4417317 complement(1440116..1441255) 1 NC_008525.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 1441255 4417317 PEPE_1466 Pediococcus pentosaceus ATCC 25745 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_804939.1 1440116 R 278197 CDS YP_804940.1 116493205 4417318 complement(1441239..1441721) 1 NC_008525.1 phosphoribosylcarboxyaminoimidazole (NCAIR) mutase 1441721 4417318 PEPE_1467 Pediococcus pentosaceus ATCC 25745 phosphoribosylcarboxyaminoimidazole (NCAIR) mutase YP_804940.1 1441239 R 278197 CDS YP_804941.1 116493206 4417319 complement(1441940..1442437) 1 NC_008525.1 amidase 1442437 4417319 PEPE_1468 Pediococcus pentosaceus ATCC 25745 amidase YP_804941.1 1441940 R 278197 CDS YP_804942.1 116493207 4417320 1442859..1443866 1 NC_008525.1 catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 1443866 4417320 PEPE_1469 Pediococcus pentosaceus ATCC 25745 asparagine synthetase AsnA YP_804942.1 1442859 D 278197 CDS YP_804943.1 116493208 4417321 complement(1443943..1444569) 1 NC_008525.1 modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 1444569 4417321 PEPE_1470 Pediococcus pentosaceus ATCC 25745 redox-sensing transcriptional repressor Rex YP_804943.1 1443943 R 278197 CDS YP_804944.1 116493209 4417322 complement(1444587..1445564) 1 NC_008525.1 Beta-lactamase class C related penicillin binding protein 1445564 4417322 PEPE_1471 Pediococcus pentosaceus ATCC 25745 Beta-lactamase class C related penicillin binding protein YP_804944.1 1444587 R 278197 CDS YP_804945.1 116493210 4417323 complement(1445582..1446619) 1 NC_008525.1 O-sialoglycoprotein endopeptidase 1446619 4417323 PEPE_1472 Pediococcus pentosaceus ATCC 25745 O-sialoglycoprotein endopeptidase YP_804945.1 1445582 R 278197 CDS YP_804946.1 116493211 4417324 complement(1446606..1447220) 1 NC_008525.1 acetyltransferase 1447220 4417324 PEPE_1473 Pediococcus pentosaceus ATCC 25745 acetyltransferase YP_804946.1 1446606 R 278197 CDS YP_804947.1 116493212 4417325 complement(1447183..1447911) 1 NC_008525.1 metal-dependent protease-like protein, putative molecular chaperone 1447911 4417325 PEPE_1474 Pediococcus pentosaceus ATCC 25745 metal-dependent protease-like protein, putative molecular chaperone YP_804947.1 1447183 R 278197 CDS YP_804948.1 116493213 4417326 complement(1448074..1449066) 1 NC_008525.1 UDP-galactose 4-epimerase 1449066 4417326 PEPE_1475 Pediococcus pentosaceus ATCC 25745 UDP-galactose 4-epimerase YP_804948.1 1448074 R 278197 CDS YP_804949.1 116493214 4417327 complement(1449112..1449849) 1 NC_008525.1 Acyl-ACP thioesterase 1449849 4417327 PEPE_1476 Pediococcus pentosaceus ATCC 25745 Acyl-ACP thioesterase YP_804949.1 1449112 R 278197 CDS YP_804950.1 116493215 4417328 complement(1449859..1450737) 1 NC_008525.1 methyltransferase 1450737 4417328 PEPE_1477 Pediococcus pentosaceus ATCC 25745 methyltransferase YP_804950.1 1449859 R 278197 CDS YP_804951.1 116493216 4417329 complement(1450739..1451080) 1 NC_008525.1 regulator of replication initiation timing 1451080 4417329 PEPE_1478 Pediococcus pentosaceus ATCC 25745 regulator of replication initiation timing YP_804951.1 1450739 R 278197 CDS YP_804952.1 116493217 4417330 complement(1451082..1452098) 1 NC_008525.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1452098 4417330 PEPE_1479 Pediococcus pentosaceus ATCC 25745 DNA polymerase III subunit delta' YP_804952.1 1451082 R 278197 CDS YP_804953.1 116493218 4417331 complement(1452098..1452433) 1 NC_008525.1 hypothetical protein 1452433 4417331 PEPE_1480 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804953.1 1452098 R 278197 CDS YP_804954.1 116493219 4417251 complement(1452449..1453078) 1 NC_008525.1 thymidylate kinase 1453078 4417251 PEPE_1481 Pediococcus pentosaceus ATCC 25745 thymidylate kinase YP_804954.1 1452449 R 278197 CDS YP_804955.1 116493220 4417252 complement(1453243..1453842) 1 NC_008525.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1453842 recR 4417252 recR Pediococcus pentosaceus ATCC 25745 recombination protein RecR YP_804955.1 1453243 R 278197 CDS YP_804956.1 116493221 4417253 complement(1453869..1454183) 1 NC_008525.1 hypothetical protein 1454183 4417253 PEPE_1483 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804956.1 1453869 R 278197 CDS YP_804957.1 116493222 4417254 complement(1454199..1455944) 1 NC_008525.1 DNA polymerase III, gamma/tau subunit 1455944 4417254 PEPE_1484 Pediococcus pentosaceus ATCC 25745 DNA polymerase III, gamma/tau subunit YP_804957.1 1454199 R 278197 CDS YP_804958.1 116493223 4417255 complement(1456157..1456642) 1 NC_008525.1 tRNA-adenosine deaminase 1456642 4417255 PEPE_1485 Pediococcus pentosaceus ATCC 25745 tRNA-adenosine deaminase YP_804958.1 1456157 R 278197 CDS YP_804959.1 116493224 4417256 complement(1456635..1457240) 1 NC_008525.1 16S RNA G1207 methylase RsmC 1457240 4417256 PEPE_1486 Pediococcus pentosaceus ATCC 25745 16S RNA G1207 methylase RsmC YP_804959.1 1456635 R 278197 CDS YP_804960.1 116493225 4417257 1457452..1457682 1 NC_008525.1 ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit 1457682 4417257 PEPE_1487 Pediococcus pentosaceus ATCC 25745 ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit YP_804960.1 1457452 D 278197 CDS YP_804961.1 116493226 4417258 1457784..1459949 1 NC_008525.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1459949 4417258 PEPE_1488 Pediococcus pentosaceus ATCC 25745 ribonucleotide-diphosphate reductase subunit alpha YP_804961.1 1457784 D 278197 CDS YP_804962.1 116493227 4417259 1459969..1460922 1 NC_008525.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 1460922 nrdF 4417259 nrdF Pediococcus pentosaceus ATCC 25745 ribonucleotide-diphosphate reductase subunit beta YP_804962.1 1459969 D 278197 CDS YP_804963.1 116493228 4417260 complement(1461085..1461450) 1 NC_008525.1 50S ribosomal protein L12 1461450 4417260 PEPE_1490 Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L12 YP_804963.1 1461085 R 278197 CDS YP_804964.1 116493229 4417261 complement(1461492..1461998) 1 NC_008525.1 50S ribosomal protein L10 1461998 4417261 PEPE_1491 Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L10 YP_804964.1 1461492 R 278197 CDS YP_804965.1 116493230 4417262 complement(1462198..1462887) 1 NC_008525.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 1462887 rplA 4417262 rplA Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L1 YP_804965.1 1462198 R 278197 CDS YP_804966.1 116493231 4417263 complement(1462980..1463405) 1 NC_008525.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 1463405 rplK 4417263 rplK Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L11 YP_804966.1 1462980 R 278197 CDS YP_804967.1 116493232 4417264 complement(1463534..1464079) 1 NC_008525.1 transcription antitermination protein nusG 1464079 4417264 PEPE_1494 Pediococcus pentosaceus ATCC 25745 transcription antitermination protein nusG YP_804967.1 1463534 R 278197 CDS YP_804968.1 116493233 4417265 complement(1464187..1464345) 1 NC_008525.1 protein translocase subunit secE/sec61 gamma 1464345 4417265 PEPE_1495 Pediococcus pentosaceus ATCC 25745 protein translocase subunit secE/sec61 gamma YP_804968.1 1464187 R 278197 CDS YP_804969.1 116493234 4417266 complement(1464358..1464507) 1 NC_008525.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 1464507 rpmG 4417266 rpmG Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L33 YP_804969.1 1464358 R 278197 CDS YP_804970.1 116493235 4417267 complement(1464563..1465156) 1 NC_008525.1 ComX 1465156 4417267 PEPE_1497 Pediococcus pentosaceus ATCC 25745 ComX YP_804970.1 1464563 R 278197 CDS YP_804971.1 116493236 4417268 complement(1465274..1466032) 1 NC_008525.1 rRNA methylase 1466032 4417268 PEPE_1498 Pediococcus pentosaceus ATCC 25745 rRNA methylase YP_804971.1 1465274 R 278197 CDS YP_804972.1 116493237 4417224 complement(1466025..1466438) 1 NC_008525.1 ribonuclease III family protein 1466438 4417224 PEPE_1499 Pediococcus pentosaceus ATCC 25745 ribonuclease III family protein YP_804972.1 1466025 R 278197 CDS YP_804973.1 116493238 4417225 complement(1466431..1467843) 1 NC_008525.1 cysteinyl-tRNA synthetase 1467843 4417225 PEPE_1500 Pediococcus pentosaceus ATCC 25745 cysteinyl-tRNA synthetase YP_804973.1 1466431 R 278197 CDS YP_804974.1 116493239 4417226 complement(1468024..1469511) 1 NC_008525.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1469511 gltX 4417226 gltX Pediococcus pentosaceus ATCC 25745 glutamyl-tRNA synthetase YP_804974.1 1468024 R 278197 CDS YP_804975.1 116493240 4417227 complement(1469581..1470711) 1 NC_008525.1 integral membrane protein 1470711 4417227 PEPE_1502 Pediococcus pentosaceus ATCC 25745 integral membrane protein YP_804975.1 1469581 R 278197 CDS YP_804976.1 116493241 4417228 complement(1470729..1472099) 1 NC_008525.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1472099 4417228 PEPE_1503 Pediococcus pentosaceus ATCC 25745 DNA repair protein RadA YP_804976.1 1470729 R 278197 CDS YP_804977.1 116493242 4417229 complement(1472199..1472732) 1 NC_008525.1 deoxyuridine 5'-triphosphate nucleotidohydrolase 1472732 4417229 PEPE_1504 Pediococcus pentosaceus ATCC 25745 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_804977.1 1472199 R 278197 CDS YP_804978.1 116493243 4417230 1472869..1473198 1 NC_008525.1 acetyltransferase 1473198 4417230 PEPE_1505 Pediococcus pentosaceus ATCC 25745 acetyltransferase YP_804978.1 1472869 D 278197 CDS YP_804979.1 116493244 4417231 1473202..1473888 1 NC_008525.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 1473888 4417231 PEPE_1506 Pediococcus pentosaceus ATCC 25745 ribose-5-phosphate isomerase A YP_804979.1 1473202 D 278197 CDS YP_804980.1 116493245 4417232 1473958..1475304 1 NC_008525.1 aminopeptidase C 1475304 4417232 PEPE_1507 Pediococcus pentosaceus ATCC 25745 aminopeptidase C YP_804980.1 1473958 D 278197 CDS YP_804981.1 116493246 4417233 complement(1475380..1475760) 1 NC_008525.1 transcriptional regulator 1475760 4417233 PEPE_1508 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_804981.1 1475380 R 278197 CDS YP_804982.1 116493247 4417234 complement(1475824..1477011) 1 NC_008525.1 arabinose efflux permease 1477011 4417234 PEPE_1509 Pediococcus pentosaceus ATCC 25745 arabinose efflux permease YP_804982.1 1475824 R 278197 CDS YP_804983.1 116493248 4417235 complement(1477164..1477844) 1 NC_008525.1 phosphoglycerate mutase 1477844 4417235 PEPE_1510 Pediococcus pentosaceus ATCC 25745 phosphoglycerate mutase YP_804983.1 1477164 R 278197 CDS YP_804984.1 116493249 4417236 complement(1478016..1478987) 1 NC_008525.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1478987 4417236 PEPE_1511 Pediococcus pentosaceus ATCC 25745 3-oxoacyl-ACP synthase YP_804984.1 1478016 R 278197 CDS YP_804985.1 116493250 4417237 1479229..1479690 1 NC_008525.1 hypothetical protein 1479690 4417237 PEPE_1512 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804985.1 1479229 D 278197 CDS YP_804986.1 116493251 4417238 complement(1479748..1480248) 1 NC_008525.1 phosphotransferase system, mannose/fructose-specific component IIB 1480248 4417238 PEPE_1513 Pediococcus pentosaceus ATCC 25745 phosphotransferase system, mannose/fructose-specific component IIB YP_804986.1 1479748 R 278197 CDS YP_804987.1 116493252 4417239 complement(1480280..1483210) 1 NC_008525.1 transcriptional regulator 1483210 4417239 PEPE_1514 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_804987.1 1480280 R 278197 CDS YP_804988.1 116493253 4417240 complement(1483406..1483786) 1 NC_008525.1 hypothetical protein 1483786 4417240 PEPE_1515 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804988.1 1483406 R 278197 CDS YP_804989.1 116493254 4417208 complement(1483896..1484807) 1 NC_008525.1 mannose-specific PTS system component IID 1484807 4417208 PEPE_1516 Pediococcus pentosaceus ATCC 25745 mannose-specific PTS system component IID YP_804989.1 1483896 R 278197 CDS YP_804990.1 116493255 4417209 complement(1484825..1485631) 1 NC_008525.1 mannose-specific PTS system component IIC 1485631 4417209 PEPE_1517 Pediococcus pentosaceus ATCC 25745 mannose-specific PTS system component IIC YP_804990.1 1484825 R 278197 CDS YP_804991.1 116493256 4417210 complement(1485659..1486630) 1 NC_008525.1 phosphotransferase system, mannose/fructose-specific component IIA 1486630 4417210 PEPE_1518 Pediococcus pentosaceus ATCC 25745 phosphotransferase system, mannose/fructose-specific component IIA YP_804991.1 1485659 R 278197 CDS YP_804992.1 116493257 4417212 complement(1487284..1487730) 1 NC_008525.1 hypothetical protein 1487730 4417212 PEPE_1520 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804992.1 1487284 R 278197 CDS YP_804993.1 116493258 4417213 complement(1487732..1489900) 1 NC_008525.1 transcriptional accessory protein 1489900 4417213 PEPE_1521 Pediococcus pentosaceus ATCC 25745 transcriptional accessory protein YP_804993.1 1487732 R 278197 CDS YP_804994.1 116493259 4417214 complement(1489991..1490425) 1 NC_008525.1 hypothetical protein 1490425 4417214 PEPE_1522 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_804994.1 1489991 R 278197 CDS YP_804995.1 116493260 4417215 complement(1490438..1493089) 1 NC_008525.1 cation transport ATPase 1493089 4417215 PEPE_1523 Pediococcus pentosaceus ATCC 25745 cation transport ATPase YP_804995.1 1490438 R 278197 CDS YP_804996.1 116493261 4417216 complement(1493317..1494135) 1 NC_008525.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1494135 nadE 4417216 nadE Pediococcus pentosaceus ATCC 25745 NAD synthetase YP_804996.1 1493317 R 278197 CDS YP_804997.1 116493262 4417217 complement(1494153..1495616) 1 NC_008525.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1495616 4417217 PEPE_1525 Pediococcus pentosaceus ATCC 25745 nicotinate phosphoribosyltransferase YP_804997.1 1494153 R 278197 CDS YP_804998.1 116493263 4417218 1495724..1496455 1 NC_008525.1 N-acetylmannosaminyltransferase 1496455 4417218 PEPE_1526 Pediococcus pentosaceus ATCC 25745 N-acetylmannosaminyltransferase YP_804998.1 1495724 D 278197 CDS YP_804999.1 116493264 4417219 complement(1496483..1497184) 1 NC_008525.1 GntR family transcriptional regulator 1497184 4417219 PEPE_1527 Pediococcus pentosaceus ATCC 25745 GntR family transcriptional regulator YP_804999.1 1496483 R 278197 CDS YP_805000.1 116493265 4417220 complement(1497211..1498353) 1 NC_008525.1 N-acetylglucosamine 6-phosphate deacetylase 1498353 4417220 PEPE_1528 Pediococcus pentosaceus ATCC 25745 N-acetylglucosamine 6-phosphate deacetylase YP_805000.1 1497211 R 278197 CDS YP_805001.1 116493266 4417221 complement(1498419..1499210) 1 NC_008525.1 pyrroline-5-carboxylate reductase 1499210 4417221 PEPE_1529 Pediococcus pentosaceus ATCC 25745 pyrroline-5-carboxylate reductase YP_805001.1 1498419 R 278197 CDS YP_805002.1 116493267 4417241 complement(1499675..1500490) 1 NC_008525.1 phosphohydrolase 1500490 4417241 PEPE_1532 Pediococcus pentosaceus ATCC 25745 phosphohydrolase YP_805002.1 1499675 R 278197 CDS YP_805003.1 116493268 4417242 complement(1500495..1501028) 1 NC_008525.1 dihydrofolate reductase 1501028 4417242 PEPE_1533 Pediococcus pentosaceus ATCC 25745 dihydrofolate reductase YP_805003.1 1500495 R 278197 CDS YP_805004.1 116493269 4417243 complement(1501096..1502562) 1 NC_008525.1 dipeptide/tripeptide permease 1502562 4417243 PEPE_1534 Pediococcus pentosaceus ATCC 25745 dipeptide/tripeptide permease YP_805004.1 1501096 R 278197 CDS YP_805005.1 116493270 4417174 complement(1508447..1509943) 1 NC_008525.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1509943 lysS 4417174 lysS Pediococcus pentosaceus ATCC 25745 lysyl-tRNA synthetase YP_805005.1 1508447 R 278197 CDS YP_805006.1 116493271 4417175 complement(1510010..1511008) 1 NC_008525.1 tRNA-dihydrouridine synthase 1511008 4417175 PEPE_1543 Pediococcus pentosaceus ATCC 25745 tRNA-dihydrouridine synthase YP_805006.1 1510010 R 278197 CDS YP_805007.1 116493272 4417176 complement(1511092..1512006) 1 NC_008525.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 1512006 hslO 4417176 hslO Pediococcus pentosaceus ATCC 25745 Hsp33-like chaperonin YP_805007.1 1511092 R 278197 CDS YP_805008.1 116493273 4417177 complement(1512029..1514110) 1 NC_008525.1 FtsH-2 peptidase 1514110 4417177 PEPE_1545 Pediococcus pentosaceus ATCC 25745 FtsH-2 peptidase YP_805008.1 1512029 R 278197 CDS YP_805009.1 116493274 4417178 complement(1514204..1514740) 1 NC_008525.1 hypoxanthine phosphoribosyltransferase 1514740 4417178 PEPE_1546 Pediococcus pentosaceus ATCC 25745 hypoxanthine phosphoribosyltransferase YP_805009.1 1514204 R 278197 CDS YP_805010.1 116493275 4417179 complement(1514730..1516100) 1 NC_008525.1 tRNA(Ile)-lysidine synthetase, MesJ 1516100 4417179 PEPE_1547 Pediococcus pentosaceus ATCC 25745 tRNA(Ile)-lysidine synthetase, MesJ YP_805010.1 1514730 R 278197 CDS YP_805011.1 116493276 4417180 complement(1516103..1516609) 1 NC_008525.1 RNA-binding protein 1516609 4417180 PEPE_1548 Pediococcus pentosaceus ATCC 25745 RNA-binding protein YP_805011.1 1516103 R 278197 CDS YP_805012.1 116493277 4417181 complement(1516759..1517115) 1 NC_008525.1 septum formation initiator 1517115 4417181 PEPE_1549 Pediococcus pentosaceus ATCC 25745 septum formation initiator YP_805012.1 1516759 R 278197 CDS YP_805013.1 116493278 4417182 complement(1517188..1517457) 1 NC_008525.1 ribosome-associated heat shock protein implicated in the recycling of the 50S subunit S4-like protein 1517457 4417182 PEPE_1550 Pediococcus pentosaceus ATCC 25745 ribosome-associated heat shock protein implicated in the recycling of the 50S subunit S4-like protein YP_805013.1 1517188 R 278197 CDS YP_805014.1 116493279 4417183 complement(1517454..1519037) 1 NC_008525.1 polysaccharide transporter 1519037 4417183 PEPE_1551 Pediococcus pentosaceus ATCC 25745 polysaccharide transporter YP_805014.1 1517454 R 278197 CDS YP_805015.1 116493280 4417184 complement(1519047..1522544) 1 NC_008525.1 transcription-repair coupling factor 1522544 4417184 PEPE_1552 Pediococcus pentosaceus ATCC 25745 transcription-repair coupling factor YP_805015.1 1519047 R 278197 CDS YP_805016.1 116493281 4417185 complement(1522563..1523120) 1 NC_008525.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1523120 4417185 PEPE_1553 Pediococcus pentosaceus ATCC 25745 peptidyl-tRNA hydrolase YP_805016.1 1522563 R 278197 CDS YP_805017.1 116493282 4417186 1523371..1524333 1 NC_008525.1 malate dehydrogenase (NAD) 1524333 4417186 PEPE_1554 Pediococcus pentosaceus ATCC 25745 malate dehydrogenase (NAD) YP_805017.1 1523371 D 278197 CDS YP_805018.1 116493283 4417187 1524728..1526131 1 NC_008525.1 hypothetical protein 1526131 4417187 PEPE_1555 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805018.1 1524728 D 278197 CDS YP_805019.1 116493284 4417188 1526197..1526841 1 NC_008525.1 hypothetical protein 1526841 4417188 PEPE_1556 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805019.1 1526197 D 278197 CDS YP_805020.1 116493285 4417189 complement(1526943..1527305) 1 NC_008525.1 toxin-antitoxin addiction module toxin component MazF (an endoRNAse) 1527305 4417189 PEPE_1557 Pediococcus pentosaceus ATCC 25745 toxin-antitoxin addiction module toxin component MazF (an endoRNAse) YP_805020.1 1526943 R 278197 CDS YP_805021.1 116493286 4417190 complement(1527344..1527583) 1 NC_008525.1 hypothetical protein 1527583 4417190 PEPE_1558 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805021.1 1527344 R 278197 CDS YP_805022.1 116493287 4417191 complement(1527638..1528762) 1 NC_008525.1 alanine racemase 1528762 4417191 PEPE_1559 Pediococcus pentosaceus ATCC 25745 alanine racemase YP_805022.1 1527638 R 278197 CDS YP_805023.1 116493288 4417192 complement(1528764..1529120) 1 NC_008525.1 phosphopantetheinyl transferase (holo-ACP synthase) 1529120 4417192 PEPE_1560 Pediococcus pentosaceus ATCC 25745 phosphopantetheinyl transferase (holo-ACP synthase) YP_805023.1 1528764 R 278197 CDS YP_805024.1 116493289 4417193 complement(1529210..1530790) 1 NC_008525.1 superfamily II DNA/RNA helicase 1530790 4417193 PEPE_1561 Pediococcus pentosaceus ATCC 25745 superfamily II DNA/RNA helicase YP_805024.1 1529210 R 278197 CDS YP_805025.1 116493290 4417194 complement(1531083..1532465) 1 NC_008525.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 1532465 4417194 PEPE_1562 Pediococcus pentosaceus ATCC 25745 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_805025.1 1531083 R 278197 CDS YP_805026.1 116493291 4417195 complement(1532630..1533412) 1 NC_008525.1 hypothetical protein 1533412 4417195 PEPE_1563 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805026.1 1532630 R 278197 CDS YP_805027.1 116493292 4417196 complement(1533446..1534342) 1 NC_008525.1 putative metalloprotease; heat shock protein HtpX 1534342 4417196 PEPE_1564 Pediococcus pentosaceus ATCC 25745 heat shock protein HtpX YP_805027.1 1533446 R 278197 CDS YP_805028.1 116493293 4417197 complement(1534358..1534939) 1 NC_008525.1 hypothetical protein 1534939 4417197 PEPE_1565 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805028.1 1534358 R 278197 CDS YP_805029.1 116493294 4417198 complement(1535030..1535719) 1 NC_008525.1 sortase (surface protein transpeptidase) 1535719 4417198 PEPE_1566 Pediococcus pentosaceus ATCC 25745 sortase (surface protein transpeptidase) YP_805029.1 1535030 R 278197 CDS YP_805030.1 116493295 4417199 1535796..1537025 1 NC_008525.1 major facilitator superfamily permease 1537025 4417199 PEPE_1567 Pediococcus pentosaceus ATCC 25745 major facilitator superfamily permease YP_805030.1 1535796 D 278197 CDS YP_805031.1 116493296 4417200 complement(1537153..1537398) 1 NC_008525.1 50S ribosomal protein L31 1537398 4417200 PEPE_1568 Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L31 YP_805031.1 1537153 R 278197 CDS YP_805032.1 116493297 4417201 complement(1537502..1538788) 1 NC_008525.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 1538788 rho 4417201 rho Pediococcus pentosaceus ATCC 25745 transcription termination factor Rho YP_805032.1 1537502 R 278197 CDS YP_805033.1 116493298 4417202 complement(1538814..1540085) 1 NC_008525.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1540085 4417202 PEPE_1570 Pediococcus pentosaceus ATCC 25745 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_805033.1 1538814 R 278197 CDS YP_805034.1 116493299 4417203 complement(1540235..1541833) 1 NC_008525.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1541833 pyrG 4417203 pyrG Pediococcus pentosaceus ATCC 25745 CTP synthetase YP_805034.1 1540235 R 278197 CDS YP_805035.1 116493300 4417204 complement(1542046..1542582) 1 NC_008525.1 DNA-directed RNA polymerase, delta subunit 1542582 4417204 PEPE_1572 Pediococcus pentosaceus ATCC 25745 DNA-directed RNA polymerase, delta subunit YP_805035.1 1542046 R 278197 CDS YP_805036.1 116493301 4417205 complement(1542627..1543067) 1 NC_008525.1 hypothetical protein 1543067 4417205 PEPE_1573 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805036.1 1542627 R 278197 CDS YP_805037.1 116493302 4417206 1543221..1544570 1 NC_008525.1 HD superfamily phosphohydrolase 1544570 4417206 PEPE_1574 Pediococcus pentosaceus ATCC 25745 HD superfamily phosphohydrolase YP_805037.1 1543221 D 278197 CDS YP_805038.1 116493303 4417207 1544582..1545394 1 NC_008525.1 HAD superfamily hydrolase 1545394 4417207 PEPE_1575 Pediococcus pentosaceus ATCC 25745 HAD superfamily hydrolase YP_805038.1 1544582 D 278197 CDS YP_805039.1 116493304 4417157 complement(1545383..1545763) 1 NC_008525.1 hypothetical protein 1545763 4417157 PEPE_1576 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805039.1 1545383 R 278197 CDS YP_805040.1 116493305 4417158 1545896..1546837 1 NC_008525.1 transcriptional regulator 1546837 4417158 PEPE_1577 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_805040.1 1545896 D 278197 CDS YP_805041.1 116493306 4417159 complement(1546887..1547414) 1 NC_008525.1 hypothetical protein 1547414 4417159 PEPE_1578 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805041.1 1546887 R 278197 CDS YP_805042.1 116493307 4417160 complement(1547518..1548048) 1 NC_008525.1 hypothetical protein 1548048 4417160 PEPE_1579 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805042.1 1547518 R 278197 CDS YP_805043.1 116493308 4417161 complement(1548117..1549457) 1 NC_008525.1 Na+-driven multidrug efflux pump 1549457 4417161 PEPE_1580 Pediococcus pentosaceus ATCC 25745 Na+-driven multidrug efflux pump YP_805043.1 1548117 R 278197 CDS YP_805044.1 116493309 4417162 complement(1549477..1550136) 1 NC_008525.1 metal-dependent membrane protease 1550136 4417162 PEPE_1581 Pediococcus pentosaceus ATCC 25745 metal-dependent membrane protease YP_805044.1 1549477 R 278197 CDS YP_805045.1 116493310 4417163 1550314..1550565 1 NC_008525.1 hypothetical protein 1550565 4417163 PEPE_1582 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805045.1 1550314 D 278197 CDS YP_805046.1 116493311 4417164 complement(1550637..1551269) 1 NC_008525.1 phosphatase 1551269 4417164 PEPE_1583 Pediococcus pentosaceus ATCC 25745 phosphatase YP_805046.1 1550637 R 278197 CDS YP_805047.1 116493312 4417165 complement(1551386..1553026) 1 NC_008525.1 ABC-type oligopeptide transport system, periplasmic component 1553026 4417165 PEPE_1584 Pediococcus pentosaceus ATCC 25745 ABC-type oligopeptide transport system, periplasmic component YP_805047.1 1551386 R 278197 CDS YP_805048.1 116493313 4417166 1553457..1555322 1 NC_008525.1 FAD(NAD)-dependent oxidoreductase 1555322 4417166 PEPE_1585 Pediococcus pentosaceus ATCC 25745 FAD(NAD)-dependent oxidoreductase YP_805048.1 1553457 D 278197 CDS YP_805049.1 116493314 4417167 complement(1555420..1556250) 1 NC_008525.1 hypothetical protein 1556250 4417167 PEPE_1586 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805049.1 1555420 R 278197 CDS YP_805050.1 116493315 4417168 complement(1556335..1557621) 1 NC_008525.1 D-alanyl transfer protein 1557621 4417168 PEPE_1587 Pediococcus pentosaceus ATCC 25745 D-alanyl transfer protein YP_805050.1 1556335 R 278197 CDS YP_805051.1 116493316 4417169 complement(1557624..1557857) 1 NC_008525.1 D-alanyl carrier protein 1557857 4417169 PEPE_1588 Pediococcus pentosaceus ATCC 25745 D-alanyl carrier protein YP_805051.1 1557624 R 278197 CDS YP_805052.1 116493317 4417170 complement(1557880..1559073) 1 NC_008525.1 D-alanyl transfer protein 1559073 4417170 PEPE_1589 Pediococcus pentosaceus ATCC 25745 D-alanyl transfer protein YP_805052.1 1557880 R 278197 CDS YP_805053.1 116493318 4417171 complement(1559073..1560599) 1 NC_008525.1 D-alanine-activating enzyme 1560599 4417171 PEPE_1590 Pediococcus pentosaceus ATCC 25745 D-alanine-activating enzyme YP_805053.1 1559073 R 278197 CDS YP_805054.1 116493319 4417172 complement(1560619..1560768) 1 NC_008525.1 D-Ala-teichoic acid biosynthesis protein 1560768 4417172 PEPE_1591 Pediococcus pentosaceus ATCC 25745 D-Ala-teichoic acid biosynthesis protein YP_805054.1 1560619 R 278197 CDS YP_805055.1 116493320 4417173 complement(1561048..1561566) 1 NC_008525.1 hypothetical protein 1561566 4417173 PEPE_1592 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805055.1 1561048 R 278197 CDS YP_805056.1 116493321 4417139 complement(1561610..1562191) 1 NC_008525.1 hypothetical protein 1562191 4417139 PEPE_1593 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805056.1 1561610 R 278197 CDS YP_805057.1 116493322 4417140 complement(1562491..1562949) 1 NC_008525.1 transcriptional regulator 1562949 4417140 PEPE_1594 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_805057.1 1562491 R 278197 CDS YP_805058.1 116493323 4417141 1563098..1564576 1 NC_008525.1 major facilitator superfamily permease 1564576 4417141 PEPE_1595 Pediococcus pentosaceus ATCC 25745 major facilitator superfamily permease YP_805058.1 1563098 D 278197 CDS YP_805059.1 116493324 4417142 1564576..1565340 1 NC_008525.1 hypothetical protein 1565340 4417142 PEPE_1596 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805059.1 1564576 D 278197 CDS YP_805060.1 116493325 4417143 complement(1565391..1567073) 1 NC_008525.1 hypothetical protein 1567073 4417143 PEPE_1597 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805060.1 1565391 R 278197 CDS YP_805061.1 116493326 4417144 complement(1567108..1568406) 1 NC_008525.1 phosphotransferase system cellobiose-specific component IIC 1568406 4417144 PEPE_1598 Pediococcus pentosaceus ATCC 25745 phosphotransferase system cellobiose-specific component IIC YP_805061.1 1567108 R 278197 CDS YP_805062.1 116493327 4417145 1568625..1569779 1 NC_008525.1 AraC family transcriptional regulator 1569779 4417145 PEPE_1599 Pediococcus pentosaceus ATCC 25745 AraC family transcriptional regulator YP_805062.1 1568625 D 278197 CDS YP_805063.1 116493328 4417146 complement(1569870..1571147) 1 NC_008525.1 alpha/beta fold family hydrolase 1571147 4417146 PEPE_1600 Pediococcus pentosaceus ATCC 25745 alpha/beta fold family hydrolase YP_805063.1 1569870 R 278197 CDS YP_805064.1 116493329 4417147 complement(1571231..1572139) 1 NC_008525.1 transcriptional regulator/sugar kinase 1572139 4417147 PEPE_1601 Pediococcus pentosaceus ATCC 25745 transcriptional regulator/sugar kinase YP_805064.1 1571231 R 278197 CDS YP_805065.1 116493330 4417148 complement(1572139..1573569) 1 NC_008525.1 Beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase 1573569 4417148 PEPE_1602 Pediococcus pentosaceus ATCC 25745 Beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase YP_805065.1 1572139 R 278197 CDS YP_805066.1 116493331 4417149 complement(1573771..1574952) 1 NC_008525.1 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 1574952 4417149 PEPE_1603 Pediococcus pentosaceus ATCC 25745 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase YP_805066.1 1573771 R 278197 CDS YP_805067.1 116493332 4417150 complement(1575040..1576164) 1 NC_008525.1 Beta-lactamase class C related penicillin binding protein 1576164 4417150 PEPE_1604 Pediococcus pentosaceus ATCC 25745 Beta-lactamase class C related penicillin binding protein YP_805067.1 1575040 R 278197 CDS YP_805068.1 116493333 4417151 complement(1576151..1577887) 1 NC_008525.1 hypothetical protein 1577887 4417151 PEPE_1605 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805068.1 1576151 R 278197 CDS YP_805069.1 116493334 4417152 complement(1577963..1579024) 1 NC_008525.1 ABC-type polysaccharide/polyol phosphate transport system, ATPase component 1579024 4417152 PEPE_1606 Pediococcus pentosaceus ATCC 25745 ABC-type polysaccharide/polyol phosphate transport system, ATPase component YP_805069.1 1577963 R 278197 CDS YP_805070.1 116493335 4417153 complement(1579040..1579855) 1 NC_008525.1 ABC-type polysaccharide/polyol phosphate export system, permease component 1579855 4417153 PEPE_1607 Pediococcus pentosaceus ATCC 25745 ABC-type polysaccharide/polyol phosphate export system, permease component YP_805070.1 1579040 R 278197 CDS YP_805071.1 116493336 4417154 1580042..1585033 1 NC_008525.1 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 1585033 4417154 PEPE_1608 Pediococcus pentosaceus ATCC 25745 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase YP_805071.1 1580042 D 278197 CDS YP_805072.1 116493337 4417155 complement(1585116..1586744) 1 NC_008525.1 hypothetical protein 1586744 4417155 PEPE_1609 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805072.1 1585116 R 278197 CDS YP_805073.1 116493338 4417156 complement(1586744..1587670) 1 NC_008525.1 glycosyltransferase-like protein 1587670 4417156 PEPE_1610 Pediococcus pentosaceus ATCC 25745 glycosyltransferase-like protein YP_805073.1 1586744 R 278197 CDS YP_805074.1 116493339 4417888 1587769..1588188 1 NC_008525.1 GtcA family membrane protein 1588188 4417888 PEPE_1611 Pediococcus pentosaceus ATCC 25745 GtcA family membrane protein YP_805074.1 1587769 D 278197 CDS YP_805075.1 116493340 4417889 complement(1588200..1590227) 1 NC_008525.1 NAD-dependent DNA ligase 1590227 4417889 PEPE_1612 Pediococcus pentosaceus ATCC 25745 NAD-dependent DNA ligase YP_805075.1 1588200 R 278197 CDS YP_805076.1 116493341 4417890 complement(1590245..1591000) 1 NC_008525.1 exonuclease III 1591000 4417890 PEPE_1613 Pediococcus pentosaceus ATCC 25745 exonuclease III YP_805076.1 1590245 R 278197 CDS YP_805077.1 116493342 4417891 1591162..1591662 1 NC_008525.1 phospholipid-binding protein 1591662 4417891 PEPE_1614 Pediococcus pentosaceus ATCC 25745 phospholipid-binding protein YP_805077.1 1591162 D 278197 CDS YP_805078.1 116493343 4417892 complement(1591775..1593520) 1 NC_008525.1 hypothetical protein 1593520 4417892 PEPE_1615 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805078.1 1591775 R 278197 CDS YP_805079.1 116493344 4417893 complement(1593737..1594708) 1 NC_008525.1 malate permease 1594708 4417893 PEPE_1616 Pediococcus pentosaceus ATCC 25745 malate permease YP_805079.1 1593737 R 278197 CDS YP_805080.1 116493345 4417894 complement(1594826..1596454) 1 NC_008525.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1596454 4417894 PEPE_1617 Pediococcus pentosaceus ATCC 25745 malate dehydrogenase YP_805080.1 1594826 R 278197 CDS YP_805081.1 116493346 4417895 1596590..1597477 1 NC_008525.1 malolactic fermentation system transcription activator 1597477 4417895 PEPE_1618 Pediococcus pentosaceus ATCC 25745 malolactic fermentation system transcription activator YP_805081.1 1596590 D 278197 CDS YP_805082.1 116493347 4417896 complement(1597531..1598901) 1 NC_008525.1 NAD(FAD)-dependent dehydrogenase 1598901 4417896 PEPE_1619 Pediococcus pentosaceus ATCC 25745 NAD(FAD)-dependent dehydrogenase YP_805082.1 1597531 R 278197 CDS YP_805083.1 116493348 4417897 complement(1599095..1600009) 1 NC_008525.1 Aryl-alcohol dehydrogenase related enzyme 1600009 4417897 PEPE_1620 Pediococcus pentosaceus ATCC 25745 Aryl-alcohol dehydrogenase related enzyme YP_805083.1 1599095 R 278197 CDS YP_805084.1 116493349 4417898 complement(1600085..1600714) 1 NC_008525.1 HAD superfamily hydrolase 1600714 4417898 PEPE_1621 Pediococcus pentosaceus ATCC 25745 HAD superfamily hydrolase YP_805084.1 1600085 R 278197 CDS YP_805085.1 116493350 4417899 1600844..1602364 1 NC_008525.1 chloride channel protein EriC 1602364 4417899 PEPE_1622 Pediococcus pentosaceus ATCC 25745 chloride channel protein EriC YP_805085.1 1600844 D 278197 CDS YP_805086.1 116493351 4417900 1602712..1604226 1 NC_008525.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 1604226 glpK 4417900 glpK Pediococcus pentosaceus ATCC 25745 glycerol kinase YP_805086.1 1602712 D 278197 CDS YP_805087.1 116493352 4417901 1604244..1606061 1 NC_008525.1 glycerol-3-phosphate dehydrogenase 1606061 4417901 PEPE_1624 Pediococcus pentosaceus ATCC 25745 glycerol-3-phosphate dehydrogenase YP_805087.1 1604244 D 278197 CDS YP_805088.1 116493353 4417902 1606075..1606794 1 NC_008525.1 glycerol uptake facilitator related permease (major Intrinsic protein family) 1606794 4417902 PEPE_1625 Pediococcus pentosaceus ATCC 25745 glycerol uptake facilitator related permease (major Intrinsic protein family) YP_805088.1 1606075 D 278197 CDS YP_805089.1 116493354 4417903 complement(1606891..1608432) 1 NC_008525.1 C4-dicarboxylate anaerobic carrier dcuC 1608432 4417903 PEPE_1626 Pediococcus pentosaceus ATCC 25745 C4-dicarboxylate anaerobic carrier dcuC YP_805089.1 1606891 R 278197 CDS YP_805090.1 116493355 4417904 complement(1608804..1610225) 1 NC_008525.1 amino acid transporter 1610225 4417904 PEPE_1627 Pediococcus pentosaceus ATCC 25745 amino acid transporter YP_805090.1 1608804 R 278197 CDS YP_805091.1 116493356 4417482 complement(1610391..1611809) 1 NC_008525.1 amino acid transporter 1611809 4417482 PEPE_1628 Pediococcus pentosaceus ATCC 25745 amino acid transporter YP_805091.1 1610391 R 278197 CDS YP_805092.1 116493357 4417483 complement(1611905..1613128) 1 NC_008525.1 catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 1613128 4417483 PEPE_1629 Pediococcus pentosaceus ATCC 25745 arginine deiminase YP_805092.1 1611905 R 278197 CDS YP_805093.1 116493358 4417484 complement(1613181..1614110) 1 NC_008525.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 1614110 4417484 PEPE_1630 Pediococcus pentosaceus ATCC 25745 carbamate kinase YP_805093.1 1613181 R 278197 CDS YP_805094.1 116493359 4417485 complement(1614124..1615125) 1 NC_008525.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 1615125 4417485 PEPE_1631 Pediococcus pentosaceus ATCC 25745 ornithine carbamoyltransferase YP_805094.1 1614124 R 278197 CDS YP_805095.1 116493360 4417486 1615396..1616241 1 NC_008525.1 signal transduction protein 1616241 4417486 PEPE_1632 Pediococcus pentosaceus ATCC 25745 signal transduction protein YP_805095.1 1615396 D 278197 CDS YP_805096.1 116493361 4417487 complement(1616503..1618302) 1 NC_008525.1 oligopeptidase F 1618302 4417487 PEPE_1633 Pediococcus pentosaceus ATCC 25745 oligopeptidase F YP_805096.1 1616503 R 278197 CDS YP_805097.1 116493362 4417488 complement(1618370..1618837) 1 NC_008525.1 hypothetical protein 1618837 4417488 PEPE_1634 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805097.1 1618370 R 278197 CDS YP_805098.1 116493363 4417489 complement(1618984..1620159) 1 NC_008525.1 major facilitator superfamily permease 1620159 4417489 PEPE_1635 Pediococcus pentosaceus ATCC 25745 major facilitator superfamily permease YP_805098.1 1618984 R 278197 CDS YP_805099.1 116493364 4417490 complement(1620259..1621242) 1 NC_008525.1 biotin operon repressor 1621242 4417490 PEPE_1636 Pediococcus pentosaceus ATCC 25745 biotin operon repressor YP_805099.1 1620259 R 278197 CDS YP_805100.1 116493365 4417491 complement(1621269..1621829) 1 NC_008525.1 hypothetical protein 1621829 4417491 PEPE_1637 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805100.1 1621269 R 278197 CDS YP_805101.1 116493366 4417492 complement(1622129..1622602) 1 NC_008525.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 1622602 4417492 PEPE_1638 Pediococcus pentosaceus ATCC 25745 S-ribosylhomocysteinase YP_805101.1 1622129 R 278197 CDS YP_805102.1 116493367 4417493 complement(1622680..1624248) 1 NC_008525.1 choline-glycine betaine transporter 1624248 4417493 PEPE_1639 Pediococcus pentosaceus ATCC 25745 choline-glycine betaine transporter YP_805102.1 1622680 R 278197 CDS YP_805103.1 116493368 4417494 complement(1624454..1625005) 1 NC_008525.1 galactoside O-acetyltransferase 1625005 4417494 PEPE_1640 Pediococcus pentosaceus ATCC 25745 galactoside O-acetyltransferase YP_805103.1 1624454 R 278197 CDS YP_805104.1 116493369 4417495 complement(1625024..1626370) 1 NC_008525.1 NAD(FAD)-dependent dehydrogenase 1626370 4417495 PEPE_1641 Pediococcus pentosaceus ATCC 25745 NAD(FAD)-dependent dehydrogenase YP_805104.1 1625024 R 278197 CDS YP_805105.1 116493370 4417496 1626531..1627211 1 NC_008525.1 C-di-GMP-specific phosphodiesterase 1627211 4417496 PEPE_1642 Pediococcus pentosaceus ATCC 25745 C-di-GMP-specific phosphodiesterase YP_805105.1 1626531 D 278197 CDS YP_805106.1 116493371 4417497 complement(1627272..1627694) 1 NC_008525.1 heat shock protein Hsp20 1627694 4417497 PEPE_1643 Pediococcus pentosaceus ATCC 25745 heat shock protein Hsp20 YP_805106.1 1627272 R 278197 CDS YP_805107.1 116493372 4417498 complement(1627877..1628314) 1 NC_008525.1 nucleoside diphosphate kinase 1628314 4417498 PEPE_1644 Pediococcus pentosaceus ATCC 25745 nucleoside diphosphate kinase YP_805107.1 1627877 R 278197 CDS YP_805108.1 116493373 4417499 complement(1628411..1630501) 1 NC_008525.1 cation transport ATPase 1630501 4417499 PEPE_1645 Pediococcus pentosaceus ATCC 25745 cation transport ATPase YP_805108.1 1628411 R 278197 CDS YP_805109.1 116493374 4417535 complement(1630503..1630955) 1 NC_008525.1 transcriptional regulator 1630955 4417535 PEPE_1646 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_805109.1 1630503 R 278197 CDS YP_805110.1 116493375 4417536 complement(1631082..1631996) 1 NC_008525.1 DMT family permease 1631996 4417536 PEPE_1647 Pediococcus pentosaceus ATCC 25745 DMT family permease YP_805110.1 1631082 R 278197 CDS YP_805111.1 116493376 4417537 complement(1632151..1632594) 1 NC_008525.1 transcriptional regulator 1632594 4417537 PEPE_1648 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_805111.1 1632151 R 278197 CDS YP_805112.1 116493377 4417538 complement(1632868..1634490) 1 NC_008525.1 ABC transporter ATPase 1634490 4417538 PEPE_1649 Pediococcus pentosaceus ATCC 25745 ABC transporter ATPase YP_805112.1 1632868 R 278197 CDS YP_805113.1 116493378 4417539 complement(1634738..1636675) 1 NC_008525.1 peptide ABC transporter ATPase 1636675 4417539 PEPE_1650 Pediococcus pentosaceus ATCC 25745 peptide ABC transporter ATPase YP_805113.1 1634738 R 278197 CDS YP_805114.1 116493379 4417540 complement(1636704..1639409) 1 NC_008525.1 cation transport ATPase 1639409 4417540 PEPE_1651 Pediococcus pentosaceus ATCC 25745 cation transport ATPase YP_805114.1 1636704 R 278197 CDS YP_805115.1 116493380 4417541 complement(1639605..1640258) 1 NC_008525.1 glycine betaine/carnitine/choline ABC transporter, ATP-binding protein 1640258 4417541 PEPE_1652 Pediococcus pentosaceus ATCC 25745 glycine betaine/carnitine/choline ABC transporter, ATP-binding protein YP_805115.1 1639605 R 278197 CDS YP_805116.1 116493381 4417542 complement(1640258..1641184) 1 NC_008525.1 periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 1641184 4417542 PEPE_1653 Pediococcus pentosaceus ATCC 25745 periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) YP_805116.1 1640258 R 278197 CDS YP_805117.1 116493382 4417543 complement(1641185..1641817) 1 NC_008525.1 glycine betaine/carnitine/choline ABC transporter, permease protein 1641817 4417543 PEPE_1654 Pediococcus pentosaceus ATCC 25745 glycine betaine/carnitine/choline ABC transporter, permease protein YP_805117.1 1641185 R 278197 CDS YP_805118.1 116493383 4417544 complement(1641817..1643010) 1 NC_008525.1 ABC-type proline/glycine betaine transport system, ATPase component 1643010 4417544 PEPE_1655 Pediococcus pentosaceus ATCC 25745 ABC-type proline/glycine betaine transport system, ATPase component YP_805118.1 1641817 R 278197 CDS YP_805119.1 116493384 4417545 1643237..1644478 1 NC_008525.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 1644478 4417545 PEPE_1656 Pediococcus pentosaceus ATCC 25745 peptidase T YP_805119.1 1643237 D 278197 CDS YP_805120.1 116493385 4417546 1644540..1645580 1 NC_008525.1 dehydrogenase related protein 1645580 4417546 PEPE_1657 Pediococcus pentosaceus ATCC 25745 dehydrogenase related protein YP_805120.1 1644540 D 278197 CDS YP_805121.1 116493386 4417547 complement(1645664..1647442) 1 NC_008525.1 ABC-type multidrug transport system, ATPase and permease component 1647442 4417547 PEPE_1658 Pediococcus pentosaceus ATCC 25745 ABC-type multidrug transport system, ATPase and permease component YP_805121.1 1645664 R 278197 CDS YP_805122.1 116493387 4417548 complement(1647445..1648044) 1 NC_008525.1 transcriptional regulator 1648044 4417548 PEPE_1659 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_805122.1 1647445 R 278197 CDS YP_805123.1 116493388 4417549 complement(1648272..1648640) 1 NC_008525.1 hypothetical protein 1648640 4417549 PEPE_1660 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805123.1 1648272 R 278197 CDS YP_805124.1 116493389 4417550 complement(1648643..1649206) 1 NC_008525.1 dihydroxyacetone kinase 1649206 4417550 PEPE_1661 Pediococcus pentosaceus ATCC 25745 dihydroxyacetone kinase YP_805124.1 1648643 R 278197 CDS YP_805125.1 116493390 4417551 complement(1649233..1650225) 1 NC_008525.1 with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK 1650225 4417551 PEPE_1662 Pediococcus pentosaceus ATCC 25745 dihydroxyacetone kinase subunit DhaK YP_805125.1 1649233 R 278197 CDS YP_805126.1 116493391 4417464 1650373..1651083 1 NC_008525.1 RelA_SpoT domain-containing protein 1651083 4417464 PEPE_1663 Pediococcus pentosaceus ATCC 25745 RelA_SpoT domain-containing protein YP_805126.1 1650373 D 278197 CDS YP_805127.1 116493392 4417465 1651073..1651384 1 NC_008525.1 hypothetical protein 1651384 4417465 PEPE_1664 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805127.1 1651073 D 278197 CDS YP_805128.1 116493393 4417466 1651388..1652071 1 NC_008525.1 putative NADPH-quinone reductase 1652071 4417466 PEPE_1665 Pediococcus pentosaceus ATCC 25745 putative NADPH-quinone reductase YP_805128.1 1651388 D 278197 CDS YP_805129.1 116493394 4417467 1652071..1652235 1 NC_008525.1 hypothetical protein 1652235 4417467 PEPE_1666 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805129.1 1652071 D 278197 CDS YP_805130.1 116493395 4417468 complement(1652326..1652736) 1 NC_008525.1 hypothetical protein 1652736 4417468 PEPE_1667 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805130.1 1652326 R 278197 CDS YP_805131.1 116493396 4417469 complement(1652769..1653185) 1 NC_008525.1 hypothetical protein 1653185 4417469 PEPE_1668 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805131.1 1652769 R 278197 CDS YP_805132.1 116493397 4417470 complement(1653172..1653300) 1 NC_008525.1 hypothetical protein 1653300 4417470 PEPE_1669 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805132.1 1653172 R 278197 CDS YP_805133.1 116493398 4417471 complement(1653313..1653510) 1 NC_008525.1 hypothetical protein 1653510 4417471 PEPE_1670 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805133.1 1653313 R 278197 CDS YP_805134.1 116493399 4417472 complement(1653527..1654072) 1 NC_008525.1 hypothetical protein 1654072 4417472 PEPE_1671 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805134.1 1653527 R 278197 CDS YP_805135.1 116493400 4417473 complement(1654083..1654337) 1 NC_008525.1 hypothetical protein 1654337 4417473 PEPE_1672 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805135.1 1654083 R 278197 CDS YP_805136.1 116493401 4417474 complement(1654604..1654723) 1 NC_008525.1 hypothetical protein 1654723 4417474 PEPE_1673 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805136.1 1654604 R 278197 CDS YP_805137.1 116493402 4417475 1654842..1655651 1 NC_008525.1 HAD superfamily hydrolase 1655651 4417475 PEPE_1674 Pediococcus pentosaceus ATCC 25745 HAD superfamily hydrolase YP_805137.1 1654842 D 278197 CDS YP_805138.1 116493403 4417476 complement(1655713..1656453) 1 NC_008525.1 orotidine-5'-phosphate decarboxylase 1656453 4417476 PEPE_1675 Pediococcus pentosaceus ATCC 25745 orotidine-5'-phosphate decarboxylase YP_805138.1 1655713 R 278197 CDS YP_805139.1 116493404 4417477 1656643..1657053 1 NC_008525.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1657053 4417477 PEPE_1676 Pediococcus pentosaceus ATCC 25745 peptide deformylase YP_805139.1 1656643 D 278197 CDS YP_805140.1 116493405 4417478 complement(1657146..1657661) 1 NC_008525.1 spermine/spermidine N-acetyltransferase 1657661 4417478 PEPE_1677 Pediococcus pentosaceus ATCC 25745 spermine/spermidine N-acetyltransferase YP_805140.1 1657146 R 278197 CDS YP_805141.1 116493406 4417479 complement(1657672..1658124) 1 NC_008525.1 MarR family transcriptional regulator 1658124 4417479 PEPE_1678 Pediococcus pentosaceus ATCC 25745 MarR family transcriptional regulator YP_805141.1 1657672 R 278197 CDS YP_805142.1 116493407 4417480 complement(1658179..1658814) 1 NC_008525.1 TetR family transcriptional regulator 1658814 4417480 PEPE_1679 Pediococcus pentosaceus ATCC 25745 TetR family transcriptional regulator YP_805142.1 1658179 R 278197 CDS YP_805143.1 116493408 4417481 complement(1658818..1659960) 1 NC_008525.1 ABC-type multidrug transport system, permease component 1659960 4417481 PEPE_1680 Pediococcus pentosaceus ATCC 25745 ABC-type multidrug transport system, permease component YP_805143.1 1658818 R 278197 CDS YP_805144.1 116493409 4417518 complement(1659960..1660682) 1 NC_008525.1 ABC-type multidrug transport system, ATPase component 1660682 4417518 PEPE_1681 Pediococcus pentosaceus ATCC 25745 ABC-type multidrug transport system, ATPase component YP_805144.1 1659960 R 278197 CDS YP_805145.1 116493410 4417519 complement(1661100..1661417) 1 NC_008525.1 gamma-carboxymuconolactone decarboxylase subunit-like protein 1661417 4417519 PEPE_1682 Pediococcus pentosaceus ATCC 25745 gamma-carboxymuconolactone decarboxylase subunit-like protein YP_805145.1 1661100 R 278197 CDS YP_805146.1 116493411 4417520 complement(1661417..1661833) 1 NC_008525.1 double-stranded beta-helix-like protein 1661833 4417520 PEPE_1683 Pediococcus pentosaceus ATCC 25745 double-stranded beta-helix-like protein YP_805146.1 1661417 R 278197 CDS YP_805147.1 116493412 4417521 complement(1661850..1662320) 1 NC_008525.1 flavodoxin 1662320 4417521 PEPE_1684 Pediococcus pentosaceus ATCC 25745 flavodoxin YP_805147.1 1661850 R 278197 CDS YP_805148.1 116493413 4417522 complement(1662416..1663300) 1 NC_008525.1 LysR family transcriptional regulator 1663300 4417522 PEPE_1685 Pediococcus pentosaceus ATCC 25745 LysR family transcriptional regulator YP_805148.1 1662416 R 278197 CDS YP_805149.1 116493414 4417523 1663367..1663894 1 NC_008525.1 acetyltransferase 1663894 4417523 PEPE_1686 Pediococcus pentosaceus ATCC 25745 acetyltransferase YP_805149.1 1663367 D 278197 CDS YP_805150.1 116493415 4417524 1663945..1664007 1 NC_008525.1 hypothetical protein 1664007 4417524 PEPE_1687 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805150.1 1663945 D 278197 CDS YP_805151.1 116493416 4417525 1664029..1665204 1 NC_008525.1 major facilitator superfamily permease 1665204 4417525 PEPE_1688 Pediococcus pentosaceus ATCC 25745 major facilitator superfamily permease YP_805151.1 1664029 D 278197 CDS YP_805152.1 116493417 4417526 complement(1665263..1665529) 1 NC_008525.1 hypothetical protein 1665529 4417526 PEPE_1689 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805152.1 1665263 R 278197 CDS YP_805153.1 116493418 4417527 complement(1665550..1666380) 1 NC_008525.1 PP family ATPase 1666380 4417527 PEPE_1690 Pediococcus pentosaceus ATCC 25745 PP family ATPase YP_805153.1 1665550 R 278197 CDS YP_805154.1 116493419 4417528 complement(1666412..1667125) 1 NC_008525.1 glycerol uptake facilitator related permease (major Intrinsic protein family) 1667125 4417528 PEPE_1691 Pediococcus pentosaceus ATCC 25745 glycerol uptake facilitator related permease (major Intrinsic protein family) YP_805154.1 1666412 R 278197 CDS YP_805155.1 116493420 4417529 complement(1667151..1668398) 1 NC_008525.1 hypothetical protein 1668398 4417529 PEPE_1692 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805155.1 1667151 R 278197 CDS YP_805156.1 116493421 4417530 complement(1668404..1669144) 1 NC_008525.1 NCAIR mutase (PurE)-related protein 1669144 4417530 PEPE_1693 Pediococcus pentosaceus ATCC 25745 NCAIR mutase (PurE)-related protein YP_805156.1 1668404 R 278197 CDS YP_805157.1 116493422 4417531 complement(1669167..1670441) 1 NC_008525.1 hypothetical protein 1670441 4417531 PEPE_1694 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805157.1 1669167 R 278197 CDS YP_805158.1 116493423 4417532 1670612..1671265 1 NC_008525.1 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase 1671265 4417532 PEPE_1695 Pediococcus pentosaceus ATCC 25745 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase YP_805158.1 1670612 D 278197 CDS YP_805159.1 116493424 4417533 1671286..1672293 1 NC_008525.1 high-affinity nickel permease 1672293 4417533 PEPE_1696 Pediococcus pentosaceus ATCC 25745 high-affinity nickel permease YP_805159.1 1671286 D 278197 CDS YP_805160.1 116493425 4417534 complement(1672414..1673298) 1 NC_008525.1 ribose transport protein 1673298 4417534 PEPE_1697 Pediococcus pentosaceus ATCC 25745 ribose transport protein YP_805160.1 1672414 R 278197 CDS YP_805161.1 116493426 4417500 complement(1673336..1673731) 1 NC_008525.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 1673731 4417500 PEPE_1698 Pediococcus pentosaceus ATCC 25745 D-ribose pyranase YP_805161.1 1673336 R 278197 CDS YP_805162.1 116493427 4417501 complement(1673744..1674652) 1 NC_008525.1 ribokinase family sugar kinase 1674652 4417501 PEPE_1699 Pediococcus pentosaceus ATCC 25745 ribokinase family sugar kinase YP_805162.1 1673744 R 278197 CDS YP_805163.1 116493428 4417502 complement(1674749..1675747) 1 NC_008525.1 LacI family transcription regulator 1675747 4417502 PEPE_1700 Pediococcus pentosaceus ATCC 25745 LacI family transcription regulator YP_805163.1 1674749 R 278197 CDS YP_805164.1 116493429 4417503 complement(1675896..1677239) 1 NC_008525.1 manganese transport protein MntH 1677239 4417503 PEPE_1701 Pediococcus pentosaceus ATCC 25745 manganese transport protein MntH YP_805164.1 1675896 R 278197 CDS YP_805165.1 116493430 4417504 complement(1677920..1679773) 1 NC_008525.1 hypothetical protein 1679773 4417504 PEPE_1702 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805165.1 1677920 R 278197 CDS YP_805166.1 116493431 4417505 complement(1679802..1681763) 1 NC_008525.1 glycosyltransferase 1681763 4417505 PEPE_1703 Pediococcus pentosaceus ATCC 25745 glycosyltransferase YP_805166.1 1679802 R 278197 CDS YP_805167.1 116493432 4417506 complement(1681741..1682838) 1 NC_008525.1 glycosyltransferase-like protein 1682838 4417506 PEPE_1704 Pediococcus pentosaceus ATCC 25745 glycosyltransferase-like protein YP_805167.1 1681741 R 278197 CDS YP_805168.1 116493433 4417507 1683216..1683824 1 NC_008525.1 fructose-2,6-bisphosphatase 1683824 4417507 PEPE_1705 Pediococcus pentosaceus ATCC 25745 fructose-2,6-bisphosphatase YP_805168.1 1683216 D 278197 CDS YP_805169.1 116493434 4417508 complement(1683875..1684528) 1 NC_008525.1 hypothetical protein 1684528 4417508 PEPE_1706 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805169.1 1683875 R 278197 CDS YP_805170.1 116493435 4417509 complement(1684664..1685224) 1 NC_008525.1 site-specific recombinase, DNA invertase Pin related proteins 1685224 4417509 PEPE_1707 Pediococcus pentosaceus ATCC 25745 site-specific recombinase, DNA invertase Pin related proteins YP_805170.1 1684664 R 278197 CDS YP_805171.1 116493436 4417510 complement(1685496..1686128) 1 NC_008525.1 nucleoside-diphosphate-sugar epimerase 1686128 4417510 PEPE_1708 Pediococcus pentosaceus ATCC 25745 nucleoside-diphosphate-sugar epimerase YP_805171.1 1685496 R 278197 CDS YP_805172.1 116493437 4417511 complement(1686256..1686942) 1 NC_008525.1 Solo B3/4 domain-containing protein 1686942 4417511 PEPE_1709 Pediococcus pentosaceus ATCC 25745 Solo B3/4 domain-containing protein YP_805172.1 1686256 R 278197 CDS YP_805173.1 116493438 4417512 complement(1687072..1687761) 1 NC_008525.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 1687761 gpmA 4417512 gpmA Pediococcus pentosaceus ATCC 25745 phosphoglyceromutase YP_805173.1 1687072 R 278197 CDS YP_805174.1 116493439 4417513 complement(1687883..1688788) 1 NC_008525.1 lipoprotein 1688788 4417513 PEPE_1711 Pediococcus pentosaceus ATCC 25745 lipoprotein YP_805174.1 1687883 R 278197 CDS YP_805175.1 116493440 4417514 1688944..1690119 1 NC_008525.1 cyclopropane-fatty-acyl-phospholipid synthase 1690119 4417514 PEPE_1712 Pediococcus pentosaceus ATCC 25745 cyclopropane-fatty-acyl-phospholipid synthase YP_805175.1 1688944 D 278197 CDS YP_805176.1 116493441 4417515 complement(1690261..1690593) 1 NC_008525.1 hypothetical protein 1690593 4417515 PEPE_1713 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805176.1 1690261 R 278197 CDS YP_805177.1 116493442 4417516 complement(1690614..1691402) 1 NC_008525.1 branched-chain amino acid permease (azaleucine resistance) 1691402 4417516 PEPE_1714 Pediococcus pentosaceus ATCC 25745 branched-chain amino acid permease (azaleucine resistance) YP_805177.1 1690614 R 278197 CDS YP_805178.1 116493443 4417517 complement(1691534..1692790) 1 NC_008525.1 D-alanyl-D-alanine carboxypeptidase 1692790 4417517 PEPE_1715 Pediococcus pentosaceus ATCC 25745 D-alanyl-D-alanine carboxypeptidase YP_805178.1 1691534 R 278197 CDS YP_805179.1 116493444 4417394 complement(1692971..1694107) 1 NC_008525.1 Signal transduction histidine kinase 1694107 4417394 PEPE_1716 Pediococcus pentosaceus ATCC 25745 Signal transduction histidine kinase YP_805179.1 1692971 R 278197 CDS YP_805180.1 116493445 4417395 complement(1694119..1694808) 1 NC_008525.1 DNA-binding response regulator 1694808 4417395 PEPE_1717 Pediococcus pentosaceus ATCC 25745 DNA-binding response regulator YP_805180.1 1694119 R 278197 CDS YP_805181.1 116493446 4417396 complement(1694891..1695388) 1 NC_008525.1 methylated DNA-protein cysteine methyltransferase 1695388 4417396 PEPE_1718 Pediococcus pentosaceus ATCC 25745 methylated DNA-protein cysteine methyltransferase YP_805181.1 1694891 R 278197 CDS YP_805182.1 116493447 4417397 complement(1695519..1696661) 1 NC_008525.1 inosine-5'-monophosphate dehydrogenase 1696661 4417397 PEPE_1719 Pediococcus pentosaceus ATCC 25745 inosine-5'-monophosphate dehydrogenase YP_805182.1 1695519 R 278197 CDS YP_805183.1 116493448 4417398 complement(1696683..1697387) 1 NC_008525.1 hypothetical protein 1697387 4417398 PEPE_1720 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805183.1 1696683 R 278197 CDS YP_805184.1 116493449 4417399 complement(1697416..1698522) 1 NC_008525.1 GTPase, translation factor 1698522 4417399 PEPE_1721 Pediococcus pentosaceus ATCC 25745 GTPase, translation factor YP_805184.1 1697416 R 278197 CDS YP_805185.1 116493450 4417400 complement(1698739..1698924) 1 NC_008525.1 hypothetical protein 1698924 4417400 PEPE_1722 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805185.1 1698739 R 278197 CDS YP_805186.1 116493451 4417401 complement(1698938..1699789) 1 NC_008525.1 chromosome segregation DNA-binding protein 1699789 4417401 PEPE_1723 Pediococcus pentosaceus ATCC 25745 chromosome segregation DNA-binding protein YP_805186.1 1698938 R 278197 CDS YP_805187.1 116493452 4417402 complement(1699802..1700533) 1 NC_008525.1 cell division SAM-dependent methyltransferase 1700533 4417402 PEPE_1724 Pediococcus pentosaceus ATCC 25745 cell division SAM-dependent methyltransferase YP_805187.1 1699802 R 278197 CDS YP_805188.1 116493453 4417403 1700667..1701140 1 NC_008525.1 acetyltransferase 1701140 4417403 PEPE_1725 Pediococcus pentosaceus ATCC 25745 acetyltransferase YP_805188.1 1700667 D 278197 CDS YP_805189.1 116493454 4417404 complement(1701210..1702124) 1 NC_008525.1 catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; ribonucleoside hydrolase RihC 1702124 4417404 PEPE_1726 Pediococcus pentosaceus ATCC 25745 ribonucleoside hydrolase RihC YP_805189.1 1701210 R 278197 CDS YP_805190.1 116493455 4417405 complement(1702243..1703511) 1 NC_008525.1 nucleoside permease 1703511 4417405 PEPE_1727 Pediococcus pentosaceus ATCC 25745 nucleoside permease YP_805190.1 1702243 R 278197 CDS YP_805191.1 116493456 4417406 complement(1703675..1706026) 1 NC_008525.1 Rad3-related DNA helicase 1706026 4417406 PEPE_1728 Pediococcus pentosaceus ATCC 25745 Rad3-related DNA helicase YP_805191.1 1703675 R 278197 CDS YP_805192.1 116493457 4417407 1706136..1706645 1 NC_008525.1 cell wall-associated hydrolase 1706645 4417407 PEPE_1729 Pediococcus pentosaceus ATCC 25745 cell wall-associated hydrolase YP_805192.1 1706136 D 278197 CDS YP_805193.1 116493458 4417408 complement(1706689..1707216) 1 NC_008525.1 hypothetical protein 1707216 4417408 PEPE_1730 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805193.1 1706689 R 278197 CDS YP_805194.1 116493459 4417409 complement(1707292..1708509) 1 NC_008525.1 major facilitator superfamily permease 1708509 4417409 PEPE_1731 Pediococcus pentosaceus ATCC 25745 major facilitator superfamily permease YP_805194.1 1707292 R 278197 CDS YP_805195.1 116493460 4417410 1708637..1710112 1 NC_008525.1 tRNA (uracil-5-)-methyltransferase related enzyme 1710112 4417410 PEPE_1732 Pediococcus pentosaceus ATCC 25745 tRNA (uracil-5-)-methyltransferase related enzyme YP_805195.1 1708637 D 278197 CDS YP_805196.1 116493461 4417429 complement(1710184..1710759) 1 NC_008525.1 DNA-binding response regulator 1710759 4417429 PEPE_1733 Pediococcus pentosaceus ATCC 25745 DNA-binding response regulator YP_805196.1 1710184 R 278197 CDS YP_805197.1 116493462 4417430 complement(1710795..1711910) 1 NC_008525.1 Signal transduction histidine kinase 1711910 4417430 PEPE_1734 Pediococcus pentosaceus ATCC 25745 Signal transduction histidine kinase YP_805197.1 1710795 R 278197 CDS YP_805198.1 116493463 4417431 complement(1711903..1712652) 1 NC_008525.1 ABC-type multidrug transport system, permease component 1712652 4417431 PEPE_1735 Pediococcus pentosaceus ATCC 25745 ABC-type multidrug transport system, permease component YP_805198.1 1711903 R 278197 CDS YP_805199.1 116493464 4417432 complement(1712636..1713526) 1 NC_008525.1 ABC-type multidrug transport system, ATPase component 1713526 4417432 PEPE_1736 Pediococcus pentosaceus ATCC 25745 ABC-type multidrug transport system, ATPase component YP_805199.1 1712636 R 278197 CDS YP_805200.1 116493465 4417433 1713727..1714344 1 NC_008525.1 hypothetical protein 1714344 4417433 PEPE_1737 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805200.1 1713727 D 278197 CDS YP_805201.1 116493466 4417434 1714403..1714612 1 NC_008525.1 hypothetical protein 1714612 4417434 PEPE_1738 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805201.1 1714403 D 278197 CDS YP_805202.1 116493467 4417435 1714640..1715368 1 NC_008525.1 hypothetical protein 1715368 4417435 PEPE_1739 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805202.1 1714640 D 278197 CDS YP_805203.1 116493468 4417436 complement(1715420..1717354) 1 NC_008525.1 acyltransferase 1717354 4417436 PEPE_1740 Pediococcus pentosaceus ATCC 25745 acyltransferase YP_805203.1 1715420 R 278197 CDS YP_805204.1 116493469 4417437 1717673..1718236 1 NC_008525.1 Rossmann fold nucleotide-binding protein 1718236 4417437 PEPE_1741 Pediococcus pentosaceus ATCC 25745 Rossmann fold nucleotide-binding protein YP_805204.1 1717673 D 278197 CDS YP_805205.1 116493470 4417438 complement(1718278..1718568) 1 NC_008525.1 hypothetical protein 1718568 4417438 PEPE_1742 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805205.1 1718278 R 278197 CDS YP_805206.1 116493471 4417439 1718728..1719486 1 NC_008525.1 peptide ABC transporter ATPase 1719486 4417439 PEPE_1743 Pediococcus pentosaceus ATCC 25745 peptide ABC transporter ATPase YP_805206.1 1718728 D 278197 CDS YP_805207.1 116493472 4417440 1719498..1721309 1 NC_008525.1 peptide ABC transporter permease 1721309 4417440 PEPE_1744 Pediococcus pentosaceus ATCC 25745 peptide ABC transporter permease YP_805207.1 1719498 D 278197 CDS YP_805208.1 116493473 4417441 complement(1721362..1722660) 1 NC_008525.1 catalyzes the formation of pyruvate from serine; D-serine dehydratase 1722660 4417441 PEPE_1745 Pediococcus pentosaceus ATCC 25745 D-serine dehydratase YP_805208.1 1721362 R 278197 CDS YP_805209.1 116493474 4417442 complement(1722732..1723355) 1 NC_008525.1 DNA-3-methyladenine glycosylase III 1723355 4417442 PEPE_1746 Pediococcus pentosaceus ATCC 25745 DNA-3-methyladenine glycosylase III YP_805209.1 1722732 R 278197 CDS YP_805210.1 116493475 4417443 1723472..1724890 1 NC_008525.1 dipeptidase A 1724890 4417443 PEPE_1747 Pediococcus pentosaceus ATCC 25745 dipeptidase A YP_805210.1 1723472 D 278197 CDS YP_805211.1 116493476 4417444 complement(1724945..1725835) 1 NC_008525.1 Beta-lactamase class A 1725835 4417444 PEPE_1748 Pediococcus pentosaceus ATCC 25745 Beta-lactamase class A YP_805211.1 1724945 R 278197 CDS YP_805212.1 116493477 4417445 complement(1726046..1726258) 1 NC_008525.1 hypothetical protein 1726258 4417445 PEPE_1749 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805212.1 1726046 R 278197 CDS YP_805213.1 116493478 4417446 complement(1726449..1726673) 1 NC_008525.1 hypothetical protein 1726673 4417446 PEPE_1750 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805213.1 1726449 R 278197 CDS YP_805214.1 116493479 4417447 complement(1726736..1726945) 1 NC_008525.1 hypothetical protein 1726945 4417447 PEPE_1751 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805214.1 1726736 R 278197 CDS YP_805215.1 116493480 4417448 1727194..1727463 1 NC_008525.1 hypothetical protein 1727463 4417448 PEPE_1752 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805215.1 1727194 D 278197 CDS YP_805216.1 116493481 4417449 1727688..1728140 1 NC_008525.1 transcriptional regulator 1728140 4417449 PEPE_1753 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_805216.1 1727688 D 278197 CDS YP_805217.1 116493482 4417450 complement(1728893..1730038) 1 NC_008525.1 N-acetylglucosamine 6-phosphate deacetylase 1730038 4417450 PEPE_1754 Pediococcus pentosaceus ATCC 25745 N-acetylglucosamine 6-phosphate deacetylase YP_805217.1 1728893 R 278197 CDS YP_805218.1 116493483 4417451 complement(1730050..1731225) 1 NC_008525.1 phosphosugar isomerase 1731225 4417451 PEPE_1755 Pediococcus pentosaceus ATCC 25745 phosphosugar isomerase YP_805218.1 1730050 R 278197 CDS YP_805219.1 116493484 4417452 complement(1731249..1731983) 1 NC_008525.1 GntR family transcriptional regulator 1731983 4417452 PEPE_1756 Pediococcus pentosaceus ATCC 25745 GntR family transcriptional regulator YP_805219.1 1731249 R 278197 CDS YP_805220.1 116493485 4417453 complement(1732063..1732887) 1 NC_008525.1 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 1732887 4417453 PEPE_1757 Pediococcus pentosaceus ATCC 25745 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID YP_805220.1 1732063 R 278197 CDS YP_805221.1 116493486 4417454 complement(1732871..1733788) 1 NC_008525.1 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 1733788 4417454 PEPE_1758 Pediococcus pentosaceus ATCC 25745 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC YP_805221.1 1732871 R 278197 CDS YP_805222.1 116493487 4417455 complement(1733804..1734298) 1 NC_008525.1 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 1734298 4417455 PEPE_1759 Pediococcus pentosaceus ATCC 25745 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB YP_805222.1 1733804 R 278197 CDS YP_805223.1 116493488 4417456 complement(1734326..1736350) 1 NC_008525.1 hypothetical protein 1736350 4417456 PEPE_1760 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805223.1 1734326 R 278197 CDS YP_805224.1 116493489 4417457 complement(1736356..1736751) 1 NC_008525.1 phosphotransferase system, mannose/fructose-specific component IIA 1736751 4417457 PEPE_1761 Pediococcus pentosaceus ATCC 25745 phosphotransferase system, mannose/fructose-specific component IIA YP_805224.1 1736356 R 278197 CDS YP_805225.1 116493490 4417458 complement(1737082..1738590) 1 NC_008525.1 hypothetical protein 1738590 4417458 PEPE_1762 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805225.1 1737082 R 278197 CDS YP_805226.1 116493491 4417459 complement(1738674..1739552) 1 NC_008525.1 galactose mutarotase-like protein 1739552 4417459 PEPE_1763 Pediococcus pentosaceus ATCC 25745 galactose mutarotase-like protein YP_805226.1 1738674 R 278197 CDS YP_805227.1 116493492 4417460 1739809..1740315 1 NC_008525.1 hypothetical protein 1740315 4417460 PEPE_1764 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805227.1 1739809 D 278197 CDS YP_805228.1 116493493 4417461 1740430..1740906 1 NC_008525.1 hypothetical protein 1740906 4417461 PEPE_1765 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805228.1 1740430 D 278197 CDS YP_805229.1 116493494 4417462 complement(1740979..1742016) 1 NC_008525.1 NADPH:quinone reductase related Zn-dependent oxidoreductase 1742016 4417462 PEPE_1766 Pediococcus pentosaceus ATCC 25745 NADPH:quinone reductase related Zn-dependent oxidoreductase YP_805229.1 1740979 R 278197 CDS YP_805230.1 116493495 4417463 complement(1742133..1742561) 1 NC_008525.1 BadM/Rrf2 family transcriptional regulator 1742561 4417463 PEPE_1767 Pediococcus pentosaceus ATCC 25745 BadM/Rrf2 family transcriptional regulator YP_805230.1 1742133 R 278197 CDS YP_805231.1 116493496 4417411 complement(1742571..1743422) 1 NC_008525.1 nucleoside-diphosphate-sugar epimerase 1743422 4417411 PEPE_1768 Pediococcus pentosaceus ATCC 25745 nucleoside-diphosphate-sugar epimerase YP_805231.1 1742571 R 278197 CDS YP_805232.1 116493497 4417412 complement(1743567..1743770) 1 NC_008525.1 hypothetical protein 1743770 4417412 PEPE_1769 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805232.1 1743567 R 278197 CDS YP_805233.1 116493498 4417413 complement(1743914..1745320) 1 NC_008525.1 E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1745320 4417413 PEPE_1770 Pediococcus pentosaceus ATCC 25745 dihydrolipoamide dehydrogenase YP_805233.1 1743914 R 278197 CDS YP_805234.1 116493499 4417414 complement(1745323..1746612) 1 NC_008525.1 pyruvate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component 1746612 4417414 PEPE_1771 Pediococcus pentosaceus ATCC 25745 pyruvate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component YP_805234.1 1745323 R 278197 CDS YP_805235.1 116493500 4417415 complement(1746605..1747585) 1 NC_008525.1 pyruvate dehydrogenase (E1) component, beta subunit 1747585 4417415 PEPE_1772 Pediococcus pentosaceus ATCC 25745 pyruvate dehydrogenase (E1) component, beta subunit YP_805235.1 1746605 R 278197 CDS YP_805236.1 116493501 4417416 complement(1747588..1748706) 1 NC_008525.1 pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, alpha subunit 1748706 4417416 PEPE_1773 Pediococcus pentosaceus ATCC 25745 pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, alpha subunit YP_805236.1 1747588 R 278197 CDS YP_805237.1 116493502 4417417 complement(1748718..1749704) 1 NC_008525.1 lipoate-protein ligase 1749704 4417417 PEPE_1774 Pediococcus pentosaceus ATCC 25745 lipoate-protein ligase YP_805237.1 1748718 R 278197 CDS YP_805238.1 116493503 4417418 complement(1749973..1751316) 1 NC_008525.1 cellobiose-specific PTS system IIC component 1751316 4417418 PEPE_1775 Pediococcus pentosaceus ATCC 25745 cellobiose-specific PTS system IIC component YP_805238.1 1749973 R 278197 CDS YP_805239.1 116493504 4417419 complement(1751331..1752713) 1 NC_008525.1 Beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase 1752713 4417419 PEPE_1776 Pediococcus pentosaceus ATCC 25745 Beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase YP_805239.1 1751331 R 278197 CDS YP_805240.1 116493505 4417420 1752873..1753586 1 NC_008525.1 GntR family transcriptional regulator 1753586 4417420 PEPE_1777 Pediococcus pentosaceus ATCC 25745 GntR family transcriptional regulator YP_805240.1 1752873 D 278197 CDS YP_805241.1 116493506 4417421 complement(1753623..1754276) 1 NC_008525.1 p-nitrobenzoate reductase 1754276 4417421 PEPE_1778 Pediococcus pentosaceus ATCC 25745 p-nitrobenzoate reductase YP_805241.1 1753623 R 278197 CDS YP_805242.1 116493507 4417422 complement(1754534..1755169) 1 NC_008525.1 hypothetical protein 1755169 4417422 PEPE_1779 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805242.1 1754534 R 278197 CDS YP_805243.1 116493508 4417423 complement(1755310..1758702) 1 NC_008525.1 hypothetical protein 1758702 4417423 PEPE_1780 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805243.1 1755310 R 278197 CDS YP_805244.1 116493509 4417424 complement(1758772..1759092) 1 NC_008525.1 ArsR family transcriptional regulator 1759092 4417424 PEPE_1781 Pediococcus pentosaceus ATCC 25745 ArsR family transcriptional regulator YP_805244.1 1758772 R 278197 CDS YP_805245.1 116493510 4417425 complement(1759184..1759729) 1 NC_008525.1 BS_ykrK family protein 1759729 4417425 PEPE_1782 Pediococcus pentosaceus ATCC 25745 BS_ykrK family protein YP_805245.1 1759184 R 278197 CDS YP_805246.1 116493511 4417426 complement(1759707..1760570) 1 NC_008525.1 hypothetical protein 1760570 4417426 PEPE_1783 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805246.1 1759707 R 278197 CDS YP_805247.1 116493512 4417427 1760773..1761612 1 NC_008525.1 SAM-dependent methyltransferase 1761612 4417427 PEPE_1784 Pediococcus pentosaceus ATCC 25745 SAM-dependent methyltransferase YP_805247.1 1760773 D 278197 CDS YP_805248.1 116493513 4417428 complement(1762030..1763835) 1 NC_008525.1 hypothetical protein 1763835 4417428 PEPE_1785 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805248.1 1762030 R 278197 CDS YP_805249.1 116493514 4417332 complement(1763978..1764598) 1 NC_008525.1 hypothetical protein 1764598 4417332 PEPE_1786 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805249.1 1763978 R 278197 CDS YP_805250.1 116493515 4417333 complement(1764614..1765090) 1 NC_008525.1 hypothetical protein 1765090 4417333 PEPE_1787 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805250.1 1764614 R 278197 CDS YP_805251.1 116493516 4417334 1765244..1766080 1 NC_008525.1 Mn-containing catalase 1766080 4417334 PEPE_1788 Pediococcus pentosaceus ATCC 25745 Mn-containing catalase YP_805251.1 1765244 D 278197 CDS YP_805252.1 116493517 4417335 complement(1766132..1766857) 1 NC_008525.1 C-di-GMP-specific phosphodiesterase 1766857 4417335 PEPE_1789 Pediococcus pentosaceus ATCC 25745 C-di-GMP-specific phosphodiesterase YP_805252.1 1766132 R 278197 CDS YP_805253.1 116493518 4417336 complement(1766854..1768056) 1 NC_008525.1 Signal transduction diguanylate cyclase 1768056 4417336 PEPE_1790 Pediococcus pentosaceus ATCC 25745 Signal transduction diguanylate cyclase YP_805253.1 1766854 R 278197 CDS YP_805254.1 116493519 4417337 1768736..1770178 1 NC_008525.1 major facilitator superfamily permease 1770178 4417337 PEPE_1791 Pediococcus pentosaceus ATCC 25745 major facilitator superfamily permease YP_805254.1 1768736 D 278197 CDS YP_805255.1 116493520 4417338 complement(1770231..1771481) 1 NC_008525.1 trypsin-like serine protease 1771481 4417338 PEPE_1792 Pediococcus pentosaceus ATCC 25745 trypsin-like serine protease YP_805255.1 1770231 R 278197 CDS YP_805256.1 116493521 4417339 complement(1771594..1772397) 1 NC_008525.1 beta-lactamase superfamily hydrolase 1772397 4417339 PEPE_1793 Pediococcus pentosaceus ATCC 25745 beta-lactamase superfamily hydrolase YP_805256.1 1771594 R 278197 CDS YP_805257.1 116493522 4417340 complement(1772470..1773468) 1 NC_008525.1 hypothetical protein 1773468 4417340 PEPE_1794 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805257.1 1772470 R 278197 CDS YP_805258.1 116493523 4417341 complement(1773480..1774775) 1 NC_008525.1 hypothetical protein 1774775 4417341 PEPE_1795 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805258.1 1773480 R 278197 CDS YP_805259.1 116493524 4417342 complement(1774775..1776622) 1 NC_008525.1 PAS/PAC sensor signal transduction histidine kinase 1776622 4417342 PEPE_1796 Pediococcus pentosaceus ATCC 25745 PAS/PAC sensor signal transduction histidine kinase YP_805259.1 1774775 R 278197 CDS YP_805260.1 116493525 4417343 complement(1776648..1777349) 1 NC_008525.1 DNA-binding response regulator 1777349 4417343 PEPE_1797 Pediococcus pentosaceus ATCC 25745 DNA-binding response regulator YP_805260.1 1776648 R 278197 CDS YP_805261.1 116493526 4417345 complement(1777790..1778164) 1 NC_008525.1 hypothetical protein 1778164 4417345 PEPE_1799 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805261.1 1777790 R 278197 CDS YP_805262.1 116493527 4417346 complement(1778258..1779139) 1 NC_008525.1 hypothetical protein 1779139 4417346 PEPE_1800 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805262.1 1778258 R 278197 CDS YP_805263.1 116493528 4417347 complement(1779220..1779816) 1 NC_008525.1 saccharopine dehydrogenase related protein 1779816 4417347 PEPE_1801 Pediococcus pentosaceus ATCC 25745 saccharopine dehydrogenase related protein YP_805263.1 1779220 R 278197 CDS YP_805264.1 116493529 4417348 complement(1779843..1781165) 1 NC_008525.1 major facilitator superfamily permease 1781165 4417348 PEPE_1802 Pediococcus pentosaceus ATCC 25745 major facilitator superfamily permease YP_805264.1 1779843 R 278197 CDS YP_805265.1 116493530 4417349 complement(1781385..1782206) 1 NC_008525.1 HAD superfamily hydrolase 1782206 4417349 PEPE_1803 Pediococcus pentosaceus ATCC 25745 HAD superfamily hydrolase YP_805265.1 1781385 R 278197 CDS YP_805266.1 116493531 4417350 complement(1782238..1784211) 1 NC_008525.1 Beta-glucoside-specific PTS system IIABC component 1784211 4417350 PEPE_1804 Pediococcus pentosaceus ATCC 25745 Beta-glucoside-specific PTS system IIABC component YP_805266.1 1782238 R 278197 CDS YP_805267.1 116493532 4417351 1784429..1785151 1 NC_008525.1 GntR family transcriptional regulator 1785151 4417351 PEPE_1805 Pediococcus pentosaceus ATCC 25745 GntR family transcriptional regulator YP_805267.1 1784429 D 278197 CDS YP_805268.1 116493533 4417352 1785154..1786800 1 NC_008525.1 alpha, alpha-phosphotrehalase 1786800 4417352 PEPE_1806 Pediococcus pentosaceus ATCC 25745 alpha, alpha-phosphotrehalase YP_805268.1 1785154 D 278197 CDS YP_805269.1 116493534 4417353 complement(1786879..1787163) 1 NC_008525.1 hypothetical protein 1787163 4417353 PEPE_1807 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805269.1 1786879 R 278197 CDS YP_805270.1 116493535 4417355 1787563..1788252 1 NC_008525.1 transcriptional regulator 1788252 4417355 PEPE_1809 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_805270.1 1787563 D 278197 CDS YP_805271.1 116493536 4417356 1788363..1790462 1 NC_008525.1 NhaP-type Na+/H+ and K+/H+ antiporter 1790462 4417356 PEPE_1810 Pediococcus pentosaceus ATCC 25745 NhaP-type Na+/H+ and K+/H+ antiporter YP_805271.1 1788363 D 278197 CDS YP_805272.1 116493537 4417357 1790893..1791156 1 NC_008525.1 hypothetical protein 1791156 4417357 PEPE_1811 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805272.1 1790893 D 278197 CDS YP_805273.1 116493538 4417358 1791361..1791783 1 NC_008525.1 large-conductance mechanosensitive channel 1791783 4417358 PEPE_1812 Pediococcus pentosaceus ATCC 25745 large-conductance mechanosensitive channel YP_805273.1 1791361 D 278197 CDS YP_805274.1 116493539 4417359 complement(1791835..1794165) 1 NC_008525.1 peptide ABC transporter ATPase 1794165 4417359 PEPE_1813 Pediococcus pentosaceus ATCC 25745 peptide ABC transporter ATPase YP_805274.1 1791835 R 278197 CDS YP_805275.1 116493540 4417360 1794297..1794770 1 NC_008525.1 transcriptional regulator 1794770 4417360 PEPE_1814 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_805275.1 1794297 D 278197 CDS YP_805276.1 116493541 4417361 complement(1794833..1795180) 1 NC_008525.1 hypothetical protein 1795180 4417361 PEPE_1815 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805276.1 1794833 R 278197 CDS YP_805277.1 116493542 4417362 complement(1795268..1797247) 1 NC_008525.1 N-acetylglucosamine and glucose PTS, EIICBA 1797247 4417362 PEPE_1816 Pediococcus pentosaceus ATCC 25745 N-acetylglucosamine and glucose PTS, EIICBA YP_805277.1 1795268 R 278197 CDS YP_805278.1 116493543 4417363 complement(1797532..1798002) 1 NC_008525.1 6,7-dimethyl-8-ribityllumazine synthase 1798002 4417363 PEPE_1817 Pediococcus pentosaceus ATCC 25745 6,7-dimethyl-8-ribityllumazine synthase YP_805278.1 1797532 R 278197 CDS YP_805279.1 116493544 4417364 complement(1798003..1799217) 1 NC_008525.1 GTP cyclohydrolase II 1799217 4417364 PEPE_1818 Pediococcus pentosaceus ATCC 25745 GTP cyclohydrolase II YP_805279.1 1798003 R 278197 CDS YP_805280.1 116493545 4417365 complement(1799207..1799812) 1 NC_008525.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1799812 4417365 PEPE_1819 Pediococcus pentosaceus ATCC 25745 riboflavin synthase subunit alpha YP_805280.1 1799207 R 278197 CDS YP_805281.1 116493546 4417377 complement(1799813..1800874) 1 NC_008525.1 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase 1800874 4417377 PEPE_1820 Pediococcus pentosaceus ATCC 25745 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase YP_805281.1 1799813 R 278197 CDS YP_805282.1 116493547 4417378 1801315..1802685 1 NC_008525.1 NAD-dependent aldehyde dehydrogenase 1802685 4417378 PEPE_1821 Pediococcus pentosaceus ATCC 25745 NAD-dependent aldehyde dehydrogenase YP_805282.1 1801315 D 278197 CDS YP_805283.1 116493548 4417379 1802773..1803960 1 NC_008525.1 acetate kinase 1803960 4417379 PEPE_1822 Pediococcus pentosaceus ATCC 25745 acetate kinase YP_805283.1 1802773 D 278197 CDS YP_805284.1 116493549 4417380 1804064..1804384 1 NC_008525.1 PadR family transcriptional regulator 1804384 4417380 PEPE_1823 Pediococcus pentosaceus ATCC 25745 PadR family transcriptional regulator YP_805284.1 1804064 D 278197 CDS YP_805285.1 116493550 4417381 1804377..1804997 1 NC_008525.1 hypothetical protein 1804997 4417381 PEPE_1824 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805285.1 1804377 D 278197 CDS YP_805286.1 116493551 4417382 1804997..1805917 1 NC_008525.1 hypothetical protein 1805917 4417382 PEPE_1825 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805286.1 1804997 D 278197 CDS YP_805287.1 116493552 4417383 complement(1805949..1807022) 1 NC_008525.1 microcin C7 resistance MccF-like protein 1807022 4417383 PEPE_1826 Pediococcus pentosaceus ATCC 25745 microcin C7 resistance MccF-like protein YP_805287.1 1805949 R 278197 CDS YP_805288.1 116493553 4417384 1807228..1807455 1 NC_008525.1 hypothetical protein 1807455 4417384 PEPE_1827 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805288.1 1807228 D 278197 CDS YP_805289.1 116493554 4417385 complement(1807482..1808102) 1 NC_008525.1 hypothetical protein 1808102 4417385 PEPE_1828 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805289.1 1807482 R 278197 CDS YP_805290.1 116493555 4417386 1808227..1808421 1 NC_008525.1 transcriptional regulator 1808421 4417386 PEPE_1829 Pediococcus pentosaceus ATCC 25745 transcriptional regulator YP_805290.1 1808227 D 278197 CDS YP_805291.1 116493556 4417387 1808436..1808876 1 NC_008525.1 hypothetical protein 1808876 4417387 PEPE_1830 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805291.1 1808436 D 278197 CDS YP_805292.1 116493557 4417388 complement(1809020..1809499) 1 NC_008525.1 hypothetical protein 1809499 4417388 PEPE_1831 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805292.1 1809020 R 278197 CDS YP_805293.1 116493558 4417389 complement(1809999..1813706) 1 NC_008525.1 DNA helicase/exodeoxyribonuclease V, subunit A 1813706 4417389 PEPE_1832 Pediococcus pentosaceus ATCC 25745 DNA helicase/exodeoxyribonuclease V, subunit A YP_805293.1 1809999 R 278197 CDS YP_805294.1 116493559 4417390 complement(1813696..1817274) 1 NC_008525.1 DNA helicase/exodeoxyribonuclease V, subunit B 1817274 4417390 PEPE_1833 Pediococcus pentosaceus ATCC 25745 DNA helicase/exodeoxyribonuclease V, subunit B YP_805294.1 1813696 R 278197 CDS YP_805295.1 116493560 4417391 complement(1817283..1817825) 1 NC_008525.1 saccharopine dehydrogenase related protein 1817825 4417391 PEPE_1834 Pediococcus pentosaceus ATCC 25745 saccharopine dehydrogenase related protein YP_805295.1 1817283 R 278197 CDS YP_805296.1 116493561 4417392 1818151..1819476 1 NC_008525.1 xanthine/uracil permease 1819476 4417392 PEPE_1835 Pediococcus pentosaceus ATCC 25745 xanthine/uracil permease YP_805296.1 1818151 D 278197 CDS YP_805297.1 116493562 4417393 1819570..1820136 1 NC_008525.1 DNA-3-methyladenine glycosylase I 1820136 4417393 PEPE_1836 Pediococcus pentosaceus ATCC 25745 DNA-3-methyladenine glycosylase I YP_805297.1 1819570 D 278197 CDS YP_805298.1 116493563 4417366 1820156..1821130 1 NC_008525.1 lysophospholipase L1 related esterase 1821130 4417366 PEPE_1837 Pediococcus pentosaceus ATCC 25745 lysophospholipase L1 related esterase YP_805298.1 1820156 D 278197 CDS YP_805299.1 116493564 4417367 complement(1821155..1822522) 1 NC_008525.1 Na+/H+ antiporter 1822522 4417367 PEPE_1838 Pediococcus pentosaceus ATCC 25745 Na+/H+ antiporter YP_805299.1 1821155 R 278197 CDS YP_805300.1 116493565 4417368 complement(1822843..1824306) 1 NC_008525.1 cardiolipin synthetase 2 1824306 4417368 PEPE_1839 Pediococcus pentosaceus ATCC 25745 cardiolipin synthetase 2 YP_805300.1 1822843 R 278197 CDS YP_805301.1 116493566 4417369 complement(1824670..1825068) 1 NC_008525.1 diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 1825068 4417369 PEPE_1840 Pediococcus pentosaceus ATCC 25745 diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases YP_805301.1 1824670 R 278197 CDS YP_805302.1 116493567 4417370 complement(1825199..1825777) 1 NC_008525.1 Signal peptidase I 1825777 4417370 PEPE_1841 Pediococcus pentosaceus ATCC 25745 Signal peptidase I YP_805302.1 1825199 R 278197 CDS YP_805303.1 116493568 4417371 complement(1825969..1826724) 1 NC_008525.1 hypothetical protein 1826724 4417371 PEPE_1842 Pediococcus pentosaceus ATCC 25745 hypothetical protein YP_805303.1 1825969 R 278197 CDS YP_805304.1 116493569 4417372 complement(1826849..1828762) 1 NC_008525.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 1828762 4417372 PEPE_1843 Pediococcus pentosaceus ATCC 25745 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA YP_805304.1 1826849 R 278197 CDS YP_805305.1 116493570 4417373 complement(1828780..1830174) 1 NC_008525.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 1830174 trmE 4417373 trmE Pediococcus pentosaceus ATCC 25745 tRNA modification GTPase TrmE YP_805305.1 1828780 R 278197 CDS YP_805306.1 116493571 4417374 complement(1830462..1831301) 1 NC_008525.1 preprotein translocase subunit YidC 1831301 4417374 PEPE_1845 Pediococcus pentosaceus ATCC 25745 preprotein translocase subunit YidC YP_805306.1 1830462 R 278197 CDS YP_805307.1 116493572 4417375 complement(1831301..1831660) 1 NC_008525.1 RNase P protein component 1831660 4417375 PEPE_1846 Pediococcus pentosaceus ATCC 25745 RNase P protein component YP_805307.1 1831301 R 278197 CDS YP_805308.1 116493573 4417376 complement(1831772..1831906) 1 NC_008525.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 1831906 rpmH 4417376 rpmH Pediococcus pentosaceus ATCC 25745 50S ribosomal protein L34 YP_805308.1 1831772 R 278197 CDS