-- dump date 20120504_154719 -- class Genbank::CDS -- table cds_note -- id note YP_899472.1 KEGG: eca:ECA0611 hypothetical protein YP_899473.1 KEGG: eba:p1B74 hypothetical protein YP_899474.1 PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: gme:Gmet_1257 peptidase M50, putative membrane-associated zinc metallopeptidase YP_899475.1 PFAM: response regulator receiver; KEGG: gme:Gmet_0501 response regulator receiver domain protein (CheY-like) YP_899476.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: gme:Gmet_0500 histidine kinase YP_899477.1 KEGG: sdn:Sden_0665 hypothetical protein YP_899478.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: gme:Gmet_1667 histidine kinase YP_899479.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: mxa:MXAN_6547 TonB-dependent receptor YP_899480.1 KEGG: vfi:VFA1145 hypothetical protein YP_899481.1 KEGG: gme:Gmet_1561 hypothetical protein YP_899482.1 KEGG: gme:Gmet_1565 hypothetical protein YP_899483.1 PFAM: protein of unknown function DUF156; KEGG: oih:OB1141 hypothetical protein YP_899484.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: ana:alr1627 cation-transporting ATPase YP_899485.1 KEGG: gme:Gmet_1560 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region YP_899486.1 PFAM: Heavy metal transport/detoxification protein; KEGG: gme:Gmet_1556 heavy metal transport/detoxification protein YP_899487.1 KEGG: gme:Gmet_1554 hypothetical protein YP_899488.1 PFAM: protein of unknown function DUF214; KEGG: gme:Gmet_1553 protein of unknown function DUF214 YP_899489.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU1341 ABC transporter, ATP-binding protein YP_899490.1 PFAM: peptidase M23B; KEGG: gme:Gmet_1559 peptidase M23B YP_899491.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: gme:Gmet_2454 histidine kinase YP_899492.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: gsu:GSU1320 sigma-54 dependent DNA-binding response regulator YP_899493.1 PFAM: outer membrane efflux protein; KEGG: gme:Gmet_1549 outer membrane efflux protein YP_899494.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gme:Gmet_1548 secretion protein HlyD YP_899495.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: gme:Gmet_1547 heavy metal efflux pump CzcA YP_899496.1 KEGG: gme:Gmet_3510 lipoprotein, putative YP_899497.1 KEGG: gme:Gmet_1546 hypothetical protein YP_899498.1 KEGG: gsu:GSU3402 hypothetical protein YP_899499.1 KEGG: gme:Gmet_1545 hypothetical protein YP_899500.1 KEGG: gme:Gmet_1544 hypothetical protein YP_899501.1 KEGG: sal:Sala_2471 hypothetical protein YP_899502.1 PFAM: YHS domain protein; SMART: TRASH domain protein; KEGG: gme:Gmet_1543 YHS YP_899504.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: gsu:GSU1569 transcriptional regulator, CopG family YP_899505.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: mmp:MMP0766 site-specific recombinase YP_899506.1 PFAM: transposase Tn3 family protein; KEGG: mlo:mlr9023 transposase YP_899507.1 KEGG: ecs:pO157p46 hypothetical protein YP_899508.1 PFAM: nuclease (SNase domain protein); KEGG: gme:Gmet_3053 SNase-like nuclease YP_899509.1 KEGG: hch:HCH_06284 hypothetical protein YP_899510.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: hch:HCH_06283 predicted Zn peptidase YP_899513.1 KEGG: bth:BT4627 DNA modification methylase YP_899514.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; SMART: DEAD-like helicases-like; KEGG: lin:pli0027 hypothetical protein YP_899515.1 PFAM: Resolvase, N-terminal domain; KEGG: gsu:GSU1711 integrative genetic element Gsu5, resolvase YP_899519.1 KEGG: gme:Gmet_1546 hypothetical protein YP_899520.1 KEGG: gme:Gmet_1561 hypothetical protein YP_899521.1 PFAM: high-affinity nickel-transporter; KEGG: tde:TDE0116 hypothetical protein YP_899522.1 KEGG: hch:HCH_03259 transposase and inactivated derivatives YP_899523.1 KEGG: dde:Dde_0284 ABC-type uncharacterized transport system periplasmic component-like YP_899524.1 PFAM: iron dependent repressor; FeoA family protein; KEGG: gsu:GSU1382 iron-dependent repressor, putative YP_899525.1 KEGG: gme:Gmet_2444 ferrous iron transport protein B; TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport B domain protein; nucleoside recognition domain protein; Miro domain protein; Ras family protein; SMART: Ras small GTPase, Ras type YP_899526.1 KEGG: gsu:GSU3273 hypothetical protein YP_899527.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rme:Rmet_5947 heavy metal translocating P-type ATPase YP_899530.1 PFAM: protein of unknown function DUF302; KEGG: gme:Gmet_3125 protein of unknown function DUF302 YP_899531.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_899533.1 KEGG: gsu:GSU2143 hypothetical protein YP_899534.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: gsu:GSU2144 sensor histidine kinase YP_899535.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: gsu:GSU2145 DNA-binding response regulator YP_899536.1 KEGG: gsu:GSU2148 hypothetical protein YP_899537.1 PFAM: regulatory protein, ArsR; KEGG: gsu:GSU2149 transcriptional regulator, ArsR family YP_899538.1 PFAM: Resolvase, N-terminal domain; KEGG: rme:Rmet_4975 resolvase-like protein YP_899539.1 PFAM: transposase Tn3 family protein; KEGG: mlo:mlr9023 transposase YP_899540.1 KEGG: gme:Gmet_1011 antibiotic biosynthesis monooxygenase YP_899541.1 KEGG: gme:Gmet_3492 ferredoxin family protein, putative YP_899542.1 KEGG: sat:SYN_00237 hypothetical protein YP_899543.1 PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: dps:DP2119 anaerobic nitric oxide reductase flavorubredoxin YP_899544.1 PFAM: protein of unknown function DUF542, ScdA domain protein; Hemerythrin HHE cation binding domain protein; KEGG: gme:Gmet_3494 hemerythrin HHE cation binding region YP_899545.1 KEGG: gsu:GSU3152 sensory box protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_899546.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_899547.1 PFAM: HPP family protein+B94; KEGG: gsu:GSU3150 HPP family protein YP_899548.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: gme:Gmet_0297 4Fe-4S ferredoxin, iron-sulfur binding protein YP_899549.1 PFAM: cytochrome c552; KEGG: gsu:GSU3154 cytochrome c nitrite reductase, catalytic subunit NrfA, putative YP_899550.1 PFAM: transposase, IS4 family protein; KEGG: gme:Gmet_2883 transposase, IS4 YP_899551.1 KEGG: gsu:GSU3155 cytochrome c nitrite reductase, small subunit NrfH, putative YP_899552.1 KEGG: sil:SPO0479 ISSpo8, transposase YP_899553.1 PFAM: regulatory protein, TetR; KEGG: gsu:GSU0951 transcriptional regulator, TetR family YP_899554.1 PFAM: outer membrane efflux protein; KEGG: gsu:GSU0950 outer membrane efflux protein YP_899555.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gsu:GSU0949 efflux transporter, RND family, MFP subunit YP_899556.1 PFAM: protein of unknown function DUF214; KEGG: gsu:GSU0948 ABC transporter, permease protein, putative YP_899557.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU0947 ABC transporter, ATP-binding protein YP_899558.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: xfa:XFa0019 recombinase YP_899559.1 PFAM: transposase Tn3 family protein; KEGG: rme:Rmet_6179 transposase Tn3 YP_899560.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: chy:CHY_1116 ISChy4, transposition helper protein YP_899561.1 PFAM: Integrase, catalytic region; KEGG: sth:STH1130 transposase YP_899562.1 PFAM: transposase Tn3 family protein; KEGG: rme:Rmet_6179 transposase Tn3 YP_899563.1 KEGG: gsu:GSU0061 hypothetical protein YP_899564.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: gsu:GSU3117 single-strand binding protein YP_899565.1 KEGG: gsu:GSU2152 hypothetical protein YP_899566.1 KEGG: gsu:GSU2162 hypothetical protein YP_899567.1 PFAM: type III restriction enzyme, res subunit; SMART: DEAD-like helicases-like; KEGG: gsu:GSU2164 hypothetical protein YP_899569.1 KEGG: gsu:GSU2154 hypothetical protein YP_899571.1 KEGG: gsu:GSU2156 hypothetical protein YP_899572.1 KEGG: gsu:GSU3090 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein YP_899573.1 PFAM: ATPase associated with various cellular activities, AAA_5; KEGG: gsu:GSU2158 CobS protein, putative YP_899574.1 PFAM: WGR domain protein YP_899575.1 KEGG: gsu:GSU2160 hypothetical protein YP_899576.1 PFAM: von Willebrand factor, type A; KEGG: gsu:GSU2161 hypothetical protein YP_899578.1 KEGG: gsu:GSU2165 hypothetical protein YP_899580.1 KEGG: gsu:GSU2165 hypothetical protein YP_899581.1 PFAM: DNA repair protein RadC; KEGG: gsu:GSU2168 DNA repair protein RadC YP_899583.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: eca:ECA3034 putative phosphohydrolase YP_899586.1 SMART: helix-turn-helix domain protein; KEGG: mfa:Mfla_2710 transcriptional regulator, XRE family YP_899588.1 PFAM: nuclease (SNase domain protein); KEGG: gme:Gmet_3053 SNase-like nuclease YP_899590.1 PFAM: protein of unknown function DUF1643; KEGG: jan:Jann_4033 protein of unknown function DUF1643 YP_899593.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: cjr:CJE1094 site-specific recombinase, phage integrase family YP_899596.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pca:Pcar_3081 response regulator receiver domain protein (CheY-like) YP_899597.1 PFAM: histone family protein DNA-binding protein; KEGG: gme:Gmet_1417 histone-like DNA-binding protein YP_899599.1 PFAM: phage Gp37Gp68 family protein; KEGG: rsp:RSP_3795 hypothetical protein YP_899600.1 KEGG: xcv:XCVd0054 putative DNA helicase YP_899603.1 KEGG: gme:Gmet_2547 hypothetical protein YP_899604.1 PFAM: SH3 domain protein; SH3, type 3 domain protein YP_899605.1 PFAM: membrane-bound metal-dependent hydrolase YP_899606.1 PFAM: peptidase M23B; KEGG: gme:Gmet_3012 peptidase M23B YP_899609.1 KEGG: sat:SYN_01875 DNA transfer and F pilus assembly protein YP_899610.1 KEGG: sat:SYN_01891 hypothetical membrane protein YP_899611.1 KEGG: sat:SYN_01872 type IV secretory protease YP_899612.1 KEGG: sat:SYN_01871 hypothetical membrane protein YP_899613.1 KEGG: sat:SYN_01870 hypothetical cytosolic protein YP_899614.1 PFAM: TraU family protein; KEGG: sat:SYN_01869 conjugal DNA transfer protein YP_899616.1 KEGG: sat:SYN_01868 hypothetical cytosolic protein YP_899617.1 KEGG: sat:SYN_01867 hypothetical protein YP_899618.1 KEGG: sat:SYN_01866 hypothetical protein YP_899619.1 KEGG: sat:SYN_01865 sex pilus assembly protein YP_899620.1 KEGG: sat:SYN_01864 hypothetical protein YP_899621.1 PFAM: TraB pilus assembly family protein; KEGG: sat:SYN_01863 pilus assembly protein YP_899622.1 KEGG: sat:SYN_01862 hypothetical protein YP_899623.1 KEGG: sat:SYN_01861 hypothetical sex pilus assembly and synthesis protein YP_899624.1 KEGG: sat:SYN_01860 hypothetical membrane protein YP_899626.1 KEGG: sat:SYN_01858 protein-disulfide isomerase YP_899627.1 PFAM: OmpA/MotB domain protein; KEGG: gsu:GSU2172 OmpA domain protein, putative YP_899628.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: bld:BLi04369 centromere-like function involved in forespore chromosome partitioning / negative regulation of sporulation initiation; RBL00267 YP_899630.1 PFAM: initiator RepB protein; KEGG: cbu:CBUA0039 RepA protein, putative YP_899631.1 PFAM: initiator RepB protein; KEGG: lpp:plpp0004 hypothetical protein YP_899632.1 KEGG: gsu:GSU2179 hypothetical protein YP_899633.1 KEGG: gsu:GSU2178 hypothetical protein YP_899634.1 KEGG: gsu:GSU2177 hypothetical protein YP_899635.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; KEGG: gsu:GSU3418 sigma-54 dependent DNA-binding response regulator YP_899637.1 PFAM: Lytic transglycosylase, catalytic; KEGG: gsu:GSU2121 transglycosylase SLT domain protein YP_899638.1 KEGG: sat:SYN_01885 hypothetical cytosolic protein YP_899639.1 KEGG: gsu:GSU2122 TraG family protein YP_899640.1 KEGG: gsu:GSU2123 HD domain protein YP_899641.1 PFAM: glutaredoxin; KEGG: gsu:GSU2124 thioredoxin-related domain protein YP_899642.1 KEGG: gsu:GSU2125 hypothetical protein YP_899643.1 KEGG: gsu:GSU2126 hypothetical protein YP_899645.1 KEGG: tdn:Tmden_1852 ATPase YP_899646.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: gsu:GSU1374 methyl-accepting chemotaxis protein YP_899647.1 PFAM: ROSMUCR transcriptional regulator; KEGG: gme:Gmet_1305 transcriptional regulator, MucR family YP_899648.1 PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: bja:blr8018 DNA polymerase III subunit epsilon YP_899649.1 PFAM: helix-turn-helix domain protein; KEGG: eba:ebD35 hypothetical protein, potentially DNA-binding YP_899651.1 PFAM: HipA domain protein; KEGG: eba:ebA1492 hypothetical protein YP_899652.1 KEGG: csa:Csal_1887 hypothetical protein YP_899653.1 PFAM: transposase, IS605 OrfB; KEGG: sru:SRU_0641 IS605 family transposase orfB YP_899654.1 KEGG: rme:Rmet_6247 hypothetical protein YP_899658.1 PFAM: Radical SAM domain protein; KEGG: efa:EF2316 hypothetical protein YP_899661.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: eba:p1B79 hypothetical protein YP_899662.1 KEGG: eba:p1B78 hypothetical protein YP_899663.1 KEGG: rme:Rmet_6239 hypothetical protein YP_899664.1 KEGG: eba:p1B76 hypothetical protein YP_899665.1 KEGG: eba:p1B75 hypothetical protein YP_899666.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: eba:p1B72 conserved hypothetical protein, containing a UBA/ThiF-type NAD/FAD binding fold domain YP_899668.1 PFAM: MobA/MobL protein; KEGG: nmu:Nmul_D2819 MobA/MobL protein YP_899669.1 PFAM: transposase Tn3 family protein; KEGG: sec:SC008 transposase YP_899670.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: sty:HCM1.168 resolvase YP_899671.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: tbd:Tbd_1356 RND efflux system outer membrane lipoprotein NodT YP_899672.1 KEGG: rme:Rmet_1260 hypothetical protein YP_899673.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1359 ABC transporter ATPase YP_899674.1 PFAM: protein of unknown function DUF214; KEGG: tbd:Tbd_1360 ABC transporter permease protein YP_899675.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: eba:ebA6248 hypothetical protein YP_899676.1 PFAM: regulatory protein, TetR; KEGG: eba:ebA6247 transcriptional regulator, TetR family YP_899677.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: noc:Noc_0571 transcriptional regulator, XRE family YP_899678.1 PFAM: plasmid maintenance system killer; KEGG: noc:Noc_0570 plasmid maintenance system killer YP_899679.1 KEGG: plu:plu3890 hypothetical protein YP_899680.1 KEGG: plu:plu3889 hypothetical protein YP_899681.1 KEGG: gme:Gmet_A3571 hypothetical protein YP_899682.1 PFAM: plasmid encoded RepA protein; KEGG: rme:Rmet_2825 plasmid encoded RepA protein YP_899683.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: aba:Acid345_3557 transcriptional regulator, CopG family YP_899684.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: aba:Acid345_3558 addiction module toxin, RelE/StbE YP_899686.1 PFAM: transposase Tn3 family protein; KEGG: sec:SC008 transposase YP_899687.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: sty:HCM1.168 resolvase YP_899688.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: tbd:Tbd_1356 RND efflux system outer membrane lipoprotein NodT YP_899689.1 KEGG: rme:Rmet_1260 hypothetical protein YP_899690.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1359 ABC transporter ATPase YP_899691.1 PFAM: protein of unknown function DUF214; KEGG: tbd:Tbd_1360 ABC transporter permease protein YP_899692.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: eba:ebA6248 hypothetical protein YP_899693.1 PFAM: regulatory protein, TetR; KEGG: eba:ebA6247 transcriptional regulator, TetR family YP_899695.1 KEGG: mca:MCA1617 hypothetical protein YP_899696.1 KEGG: mca:MCA1616 C-5 cytosine-specific DNA methylase family protein; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase YP_899697.1 KEGG: gme:Gmet_A3571 hypothetical protein YP_899698.1 PFAM: initiator RepB protein; KEGG: gka:GKP02 replication initiator protein YP_899700.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_899701.1 KEGG: gme:Gmet_0002 DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain YP_899702.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_899703.1 KEGG: gsu:GSU0003 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II YP_899704.1 TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller; KEGG: gsu:GSU0004 DNA gyrase, A subunit YP_899705.1 KEGG: gme:Gmet_0006 hypothetical protein YP_899706.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: gsu:GSU0006 glycerol-3-phosphate dehydrogenase (NAD(P)+) YP_899707.1 KEGG: msu:MS2166 hypothetical protein YP_899708.1 TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: wsu:WS1132 hypothetical protein YP_899710.1 PFAM: protein of unknown function DUF195; KEGG: sat:SYN_00197 RmuC family protein YP_899711.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_899712.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: gme:Gmet_3550 heat shock protein DnaJ-like YP_899713.1 KEGG: gme:Gmet_3551 protoporphyrinogen oxidase; TIGRFAM: protoporphyrinogen oxidase; PFAM: amine oxidase; FAD dependent oxidoreductase YP_899714.1 PFAM: protein of unknown function DUF45; KEGG: hch:HCH_05043 predicted metal-dependent hydrolase YP_899715.1 KEGG: gsu:GSU0290 3-oxoacyl-(acyl-carrier-protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_899716.1 KEGG: gsu:GSU0289 hypothetical protein YP_899717.1 PFAM: inositol monophosphatase; KEGG: gsu:GSU0942 inositol-1-monophosphatase YP_899718.1 PFAM: transposase, IS4 family protein; KEGG: eba:p2A202 transposase YP_899719.1 PFAM: protein of unknown function YGGT; KEGG: gme:Gmet_1166 protein of unknown function YGGT YP_899720.1 PFAM: protein of unknown function DUF167; KEGG: pca:Pcar_0617 conserved hypothetical protein TIGR00251 YP_899721.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: gme:Gmet_3146 peptidylprolyl isomerase, FKBP-type YP_899722.1 TIGRFAM: MJ0042 family finger-like protein; KEGG: gme:Gmet_1032 zinc finger/thioredoxin putative YP_899723.1 KEGG: gme:Gmet_3009 hypothetical protein YP_899724.1 TIGRFAM: galactose-1-phosphate uridylyltransferase; KEGG: gme:Gmet_3176 galactose-1-phosphate uridyl transferase, class I YP_899725.1 PFAM: glycoside hydrolase, family 57; KEGG: gme:Gmet_3177 glycoside hydrolase, family 57 YP_899726.1 PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: gsu:GSU3254 phosphoglucomutase/phosphomannomutase family protein YP_899727.1 PFAM: response regulator receiver; KEGG: gme:Gmet_3179 response regulator receiver domain protein (CheY-like) YP_899728.1 PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: gme:Gmet_3180 GAF sensor signal transduction histidine kinase YP_899729.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_899731.1 Converts oxaloacetate to phosphoenolpyruvate using ATP as an energy source YP_899732.1 PFAM: carboxyl transferase; KEGG: aba:Acid345_3025 carboxyl transferase YP_899733.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: aba:Acid345_3023 biotin/lipoyl attachment YP_899734.1 PFAM: protein of unknown function DUF606; KEGG: gme:Gmet_2636 protein of unknown function DUF606 YP_899735.1 PFAM: peptidase M16 domain protein; KEGG: gsu:GSU1594 peptidase, M16 family YP_899736.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: gme:Gmet_1293 2-nitropropane dioxygenase, NPD YP_899737.1 PFAM: regulatory protein, ArsR; UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pca:Pcar_1925 transcriptional regulator, ArsR family/methyltransferase, UbiE/COQ5 family YP_899738.1 KEGG: ade:Adeh_0876 methyltransferase type 11 YP_899739.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_899740.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: gsu:GSU1030 methyl-accepting chemotaxis protein YP_899741.1 PFAM: lipolytic enzyme, G-D-S-L family; KEGG: pca:Pcar_0430 lipase YP_899742.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_899743.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_899744.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_899745.1 KEGG: gme:Gmet_0604 aspartate-semialdehyde dehydrogenase, USG-1 related; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region YP_899746.1 KEGG: cpe:CPE0468 hypothetical protein YP_899747.1 KEGG: noc:Noc_1940 hypothetical protein YP_899748.1 PFAM: asparagine synthase; KEGG: mlo:mll5256 similar to asparagine synthetase YP_899749.1 KEGG: mag:amb0575 hypothetical protein YP_899751.1 PFAM: phage Tail Collar domain protein; KEGG: pfo:Pfl_0155 phage tail collar YP_899752.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pmn:PMN2A_1092 TPR repeat YP_899753.1 PFAM: formyl transferase domain protein; KEGG: ade:Adeh_3969 methionyl-tRNA formyltransferase YP_899754.1 KEGG: hch:HCH_06050 hypothetical protein YP_899755.1 PFAM: sulfotransferase; KEGG: mag:amb1455 Flavonol 3-sulfotransferase YP_899757.1 KEGG: cpe:CPE0469 hypothetical protein YP_899758.1 PFAM: protein of unknown function DUF81; KEGG: gka:GK1638 hypothetical protein YP_899759.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mca:MCA0894 ABC transporter, ATP-binding/permease protein YP_899760.1 KEGG: hma:rrnAC0622 hypothetical protein YP_899761.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_899762.1 KEGG: ccr:CC1482 sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding; adenylylsulfate kinase; elongation factor Tu, domain 2 protein YP_899763.1 PFAM: peptidase U32; KEGG: gme:Gmet_0040 peptidase U32 YP_899764.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: gsu:GSU1529 sensory box histidine kinase/response regulator YP_899765.1 KEGG: hch:HCH_01260 hypothetical protein YP_899766.1 PFAM: nuclease (SNase domain protein); KEGG: gme:Gmet_2526 SNase-like nuclease YP_899767.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: gme:Gmet_2604 putative PTS IIA-like nitrogen-regulatory protein PtsN YP_899768.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: gsu:GSU0734 NAD-dependent dehydrogenase subunit YP_899769.1 PFAM: Na+/H+ antiporter NhaA; KEGG: gsu:GSU2303 Na+/H+ antiporter family protein YP_899770.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: pca:Pcar_0660 cytidine and deoxycytidylate deaminase family protein YP_899771.1 KEGG: gsu:GSU0751 hypothetical protein YP_899772.1 TIGRFAM: putative delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: gsu:GSU3395 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase YP_899773.1 PFAM: CheW domain protein; KEGG: chy:CHY_1030 chemotaxis protein CheW YP_899774.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: gsu:GSU3196 methyl-accepting chemotaxis protein YP_899775.1 PFAM: MCP methyltransferase, CheR-type; KEGG: gsu:GSU3195 chemotaxis protein methyltransferase CheR,putative YP_899776.1 KEGG: gme:Gmet_0176 hypothetical protein YP_899777.1 KEGG: gme:Gmet_0175 hypothetical protein YP_899778.1 KEGG: gsu:GSU1561 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase YP_899779.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: mlo:mlr6946 hypothetical protein YP_899780.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: gme:Gmet_2671 phage SPO1 DNA polymerase-related protein YP_899781.1 KEGG: gme:Gmet_2672 hypothetical protein YP_899782.1 TIGRFAM: YD repeat protein; KEGG: mba:Mbar_A3399 hypothetical protein YP_899783.1 KEGG: pfl:PFL_2458 GGDEF domain protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; SMART: PAS domain containing protein YP_899784.1 PFAM: CheC domain protein; KEGG: dps:DP1553 hypothetical protein YP_899785.1 PFAM: response regulator receiver; KEGG: tte:TTE1428 CheY-like receiver domains YP_899786.1 KEGG: gme:Gmet_2673 DNA/pantothenate metabolism flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein YP_899787.1 PFAM: beta-lactamase domain protein; KEGG: gme:Gmet_2674 beta-lactamase-like YP_899788.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: gme:Gmet_3171 rubredoxin-type Fe(Cys)4 protein YP_899789.1 KEGG: gsu:GSU2531 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_899790.1 PFAM: response regulator receiver; KEGG: bxe:Bxe_A2318 response regulator receiver domain protein(CheY) YP_899791.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_899792.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bur:Bcep18194_C7186 3-hydroxyacyl-CoA dehydrogenase YP_899793.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: cch:Cag_0831 regulatory proteins, AsnC family YP_899795.1 KEGG: tde:TDE0620 hypothetical protein YP_899796.1 PFAM: metallophosphoesterase YP_899797.1 KEGG: atc:AGR_L_56 hypothetical protein YP_899801.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: bps:BPSL3115 putative transcriptional regulator YP_899802.1 KEGG: mbu:Mbur_0518 hypothetical protein YP_899803.1 PFAM: transposase, IS4 family protein; KEGG: eba:p2A202 transposase YP_899804.1 KEGG: bur:Bcep18194_C6595 hypothetical protein YP_899805.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: chy:CHY_1116 ISChy4, transposition helper protein YP_899806.1 PFAM: aldo/keto reductase; KEGG: gsu:GSU3126 oxidoreductase, aldo/keto reductase family YP_899807.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC-type transcriptional regulator domain protein; KEGG: pca:Pcar_1091 transcriptional regulator, AraC family YP_899808.1 PFAM: protein of unknown function DUF937; KEGG: gme:Gmet_2744 protein of unknown function DUF937 YP_899809.1 KEGG: gsu:GSU0192 hypothetical protein YP_899810.1 TIGRFAM: RNA polymerase sigma factor RpoH; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: gme:Gmet_2854 sigma 32 (RpoH) YP_899811.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: gsu:GSU1554 GGDEF domain protein YP_899812.1 KEGG: tdn:Tmden_0966 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_899813.1 PFAM: glutathione peroxidase; KEGG: ccr:CC1730 glutathione peroxidase YP_899814.1 PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: gme:Gmet_2759 protein of unknown function DUF523 YP_899815.1 KEGG: pca:Pcar_0127 Mg chelatase-related protein YP_899816.1 PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: gsu:GSU0236 hypothetical protein YP_899817.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: gsu:GSU2324 hypothetical protein YP_899818.1 PFAM: glutathione peroxidase; KEGG: rru:Rru_A0020 glutathione peroxidase YP_899819.1 PFAM: SOUL heme-binding protein; KEGG: ccr:CC2549 hypothetical protein YP_899820.1 KEGG: gsu:GSU2330 hypothetical protein YP_899821.1 PFAM: Lipocalin family protein; KEGG: xac:XAC4259 lipocalin YP_899822.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: gsu:GSU2329 cyclopropane-fatty-acyl-phospholipid synthase YP_899823.1 PFAM: protein of unknown function DUF1365; KEGG: xcb:XC_2909 hypothetical protein YP_899824.1 KEGG: gsu:GSU2327 hypothetical protein YP_899825.1 KEGG: gsu:GSU2331 hypothetical protein YP_899826.1 PFAM: 3-oxo-5-alpha-steroid 4-dehydrogenase domain protein; protein of unknown function DUF1295; KEGG: gsu:GSU2323 hypothetical protein YP_899827.1 KEGG: ape:APE0026 phosphoenolpyruvate synthase YP_899828.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: mac:MA3728 hypothetical protein YP_899829.1 KEGG: gsu:GSU2320 hypothetical protein YP_899830.1 KEGG: gsu:GSU0075 hypothetical protein YP_899831.1 KEGG: pca:Pcar_1346 UV-endonuclease-like YP_899832.1 PFAM: magnesium chelatase, ChlI subunit; KEGG: gme:Gmet_3045 Mg chelatase-related protein YP_899833.1 KEGG: xcv:XCVc0009 transposase, mutator family YP_899834.1 PFAM: transposase, IS4 family protein; KEGG: gme:Gmet_3447 transposase, IS4 YP_899835.1 PFAM: transposase, mutator type; KEGG: xcv:XCVc0009 transposase, mutator family YP_899836.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: gme:Gmet_0529 methyl-accepting chemotaxis sensory transducer YP_899837.1 PFAM: helix-turn-helix domain protein; KEGG: noc:Noc_2930 transcriptional regulator, XRE family YP_899838.1 PFAM: regulatory protein, TetR; KEGG: eba:ebA6247 transcriptional regulator, TetR family YP_899839.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: tbd:Tbd_1361 RND efflux membrane protein YP_899840.1 PFAM: protein of unknown function DUF214; KEGG: tbd:Tbd_1360 ABC transporter permease protein YP_899841.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1359 ABC transporter ATPase YP_899842.1 KEGG: bxe:Bxe_C1000 hypothetical protein YP_899843.1 KEGG: gsu:GSU2956 redox-active disulfide protein 2 YP_899844.1 PFAM: Thioredoxin domain; KEGG: gsu:GSU2957 thioredoxin family protein YP_899845.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: gsu:GSU2958 thiol:disulfide interchange protein, putative YP_899846.1 KEGG: gme:Gmet_3045 Mg chelatase-related protein YP_899847.1 PFAM: helix-turn-helix domain protein YP_899851.1 PFAM: Heat shock protein 70; KEGG: cdi:DIP2120 chaperone protein DnaK YP_899855.1 PFAM: beta-lactamase domain protein; KEGG: pai:PAE0820 mRNA 3'-end processing factor, conjectural YP_899856.1 KEGG: tbr:Tb11.52.0008 hypothetical protein YP_899859.1 PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2 YP_899866.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: bxe:Bxe_A0853 AAA ATPase YP_899868.1 KEGG: gme:Gmet_3045 Mg chelatase-related protein YP_899869.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: pol:Bpro_5415 DNA/RNA non-specific endonuclease YP_899870.1 KEGG: pol:Bpro_5414 hypothetical protein YP_899871.1 PFAM: protein of unknown function UPF0270; KEGG: pca:Pcar_2862 hypothetical protein YP_899872.1 PFAM: Exonuclease VII, large subunit; KEGG: bfs:BF3774 putative exodeoxyribonuclease VII large subunit YP_899874.1 PFAM: histone family protein DNA-binding protein; KEGG: gsu:GSU2120 integration host factor, alpha subunit YP_899875.1 KEGG: zmo:ZMO0901 hypothetical protein YP_899876.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tma:TM0117 hypothetical protein YP_899877.1 PFAM: protein of unknown function DUF861, cupin_3; KEGG: mca:MCA0659 hypothetical protein YP_899878.1 PFAM: penicillin-binding protein, transpeptidase; KEGG: bte:BTH_II0373 beta-lactamase precursor YP_899880.1 KEGG: cch:Cag_0847 helicase RecD/TraA; TIGRFAM: helicase, RecD/TraA family; SMART: AAA ATPase YP_899881.1 KEGG: pca:Pcar_2246 hypothetical protein YP_899882.1 PFAM: transposase, IS4 family protein; KEGG: dsy:DSY3991 hypothetical protein YP_899883.1 PFAM: protein of unknown function DUF159; KEGG: ava:Ava_3892 protein of unknown function DUF159 YP_899884.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: gme:Gmet_1441 UMUC-like DNA-repair protein YP_899885.1 KEGG: gsu:GSU0042 hypothetical protein YP_899886.1 KEGG: gsu:GSU0041 LexA repressor; TIGRFAM: LexA repressor; PFAM: peptidase S24, S26A and S26B; LexA DNA-binding domain protein YP_899887.1 PFAM: Lytic transglycosylase, catalytic; KEGG: gsu:GSU2121 transglycosylase SLT domain protein YP_899888.1 KEGG: sat:SYN_01885 hypothetical cytosolic protein YP_899889.1 KEGG: gsu:GSU2122 TraG family protein YP_899890.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: gsu:GSU2123 HD domain protein YP_899891.1 PFAM: glutaredoxin 2; KEGG: gsu:GSU2124 thioredoxin-related domain protein YP_899892.1 KEGG: gsu:GSU2125 hypothetical protein YP_899893.1 KEGG: gsu:GSU2126 hypothetical protein YP_899894.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: gsu:GSU2151 single-strand binding protein YP_899895.1 KEGG: gsu:GSU2152 hypothetical protein YP_899896.1 KEGG: gsu:GSU2153 hypothetical protein YP_899897.1 KEGG: gsu:GSU2154 hypothetical protein YP_899898.1 KEGG: gsu:GSU2155 hypothetical protein YP_899899.1 KEGG: gsu:GSU2156 hypothetical protein YP_899900.1 KEGG: gsu:GSU2157 hypothetical protein YP_899901.1 PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: gsu:GSU2158 CobS protein, putative YP_899903.1 KEGG: gsu:GSU2160 hypothetical protein YP_899904.1 PFAM: von Willebrand factor, type A; KEGG: gsu:GSU2161 hypothetical protein YP_899905.1 KEGG: gsu:GSU2165 hypothetical protein YP_899907.1 KEGG: gsu:GSU2166 hypothetical protein YP_899909.1 PFAM: zinc finger, CHC2-family protein; KEGG: gsu:GSU2167 CHC2 zinc finger domain protein YP_899910.1 PFAM: DNA repair protein RadC; KEGG: gsu:GSU2168 DNA repair protein RadC YP_899911.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: neu:NE0251 hypothetical protein YP_899913.1 PFAM: Helix-turn-helix, type 11 domain protein; KEGG: cjr:CJE0674 transcriptional regulator, putative YP_899917.1 KEGG: rme:Rmet_5386 hypothetical protein YP_899918.1 TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; KEGG: pmu:PM0065 uracil DNA glycosylase YP_899919.1 KEGG: rba:RB5963 hypothetical protein YP_899923.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: sru:SRU_0803 site-specific recombinase, phage integrase family YP_899925.1 PFAM: WGR domain protein YP_899928.1 KEGG: pgi:PG0456 PHP N-terminal domain protein YP_899929.1 PFAM: type III restriction enzyme, res subunit; KEGG: cte:CT0911 type III restriction system endonuclease YP_899930.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: cte:CT0908 type III restriction system methylase YP_899931.1 KEGG: cte:CT0907 hypothetical protein YP_899932.1 KEGG: ecc:c5375 hypothetical protein YP_899933.1 PFAM: helicase domain protein; SMART: DEAD-like helicases-like; KEGG: cte:CT0906 DNA-dependent ATPase, SNF2 family protein YP_899936.1 KEGG: sat:SYN_01875 DNA transfer and F pilus assembly protein YP_899937.1 KEGG: sat:SYN_01891 hypothetical membrane protein YP_899939.1 KEGG: sat:SYN_01872 type IV secretory protease YP_899940.1 KEGG: sat:SYN_01871 hypothetical membrane protein YP_899941.1 KEGG: sat:SYN_01870 hypothetical cytosolic protein YP_899942.1 PFAM: TraU family protein; KEGG: sat:SYN_01869 conjugal DNA transfer protein YP_899943.1 KEGG: sat:SYN_01868 hypothetical cytosolic protein YP_899944.1 KEGG: sat:SYN_01867 hypothetical protein YP_899945.1 KEGG: sat:SYN_01866 hypothetical protein YP_899946.1 KEGG: sat:SYN_01865 sex pilus assembly protein YP_899947.1 KEGG: sat:SYN_01864 hypothetical protein YP_899948.1 PFAM: TraB pilus assembly family protein; KEGG: sat:SYN_01863 pilus assembly protein YP_899949.1 KEGG: sat:SYN_01862 hypothetical protein YP_899950.1 KEGG: sat:SYN_01861 hypothetical sex pilus assembly and synthesis protein YP_899951.1 KEGG: sat:SYN_01860 hypothetical membrane protein YP_899952.1 KEGG: sat:SYN_01859 hypothetical membrane protein YP_899953.1 KEGG: sat:SYN_01858 protein-disulfide isomerase YP_899954.1 PFAM: OmpA/MotB domain protein; KEGG: gsu:GSU2172 OmpA domain protein, putative YP_899955.1 KEGG: sat:SYN_01514 ATPase YP_899956.1 PFAM: HipA domain protein; KEGG: gsu:GSU2399 hypothetical protein YP_899957.1 PFAM: helix-turn-helix domain protein; KEGG: noc:Noc_2930 transcriptional regulator, XRE family YP_899958.1 KEGG: gsu:GSU2182 hypothetical protein YP_899959.1 KEGG: gsu:GSU2181 hypothetical protein YP_899960.1 KEGG: gsu:GSU2178 hypothetical protein YP_899962.1 PFAM: sigma-70 region 4 domain protein; KEGG: gsu:GSU2177 hypothetical protein YP_899963.1 KEGG: gsu:GSU2176 hypothetical protein YP_899964.1 PFAM: TrfA family protein; KEGG: gsu:GSU2175 TrfA-related protein YP_899965.1 PFAM: peptidase S24, S26A and S26B; bacteriophage CI repressor; KEGG: mca:MCA2959 prophage MuMc02, peptidase, family S24 YP_899966.1 PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: hch:HCH_06395 site-specific recombinase YP_899967.1 PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: gka:GK0595 cassette chromosome recombinase B YP_899968.1 PFAM: Resolvase, N-terminal domain; KEGG: gme:Gmet_2281 resolvase-like YP_899972.1 PFAM: magnesium chelatase, ChlI subunit; KEGG: gsu:GSU0489 Mg chelatase-related protein YP_899973.1 PFAM: protein of unknown function DUF152; KEGG: gsu:GSU0083 conserved hypothetical protein TIGR00726 YP_899974.1 KEGG: gsu:GSU2976 DedA family protein YP_899975.1 catalyzes the formation of 5,10-methylenetetrahydrofolate from 5-methyltetrahydrofolate and S-adenosyl-L-homocysteine and methionine from S-adenosyl-L-methionine and L-homocysteine; expressed in B. subtilis under methionine starvation conditions YP_899976.1 KEGG: gme:Gmet_0505 lipoprotein, putative YP_899977.1 TIGRFAM: tyrosine recombinase XerC; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: gme:Gmet_3042 tyrosine recombinase XerC YP_899978.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: gme:Gmet_3044 acetyl-CoA hydrolase/transferase YP_899979.1 PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: gme:Gmet_0507 hypothetical protein YP_899980.1 KEGG: gsu:GSU0672 hypothetical protein YP_899981.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: pca:Pcar_0318 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative YP_899982.1 UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin YP_899983.1 TIGRFAM: UbiD family decarboxylases; PFAM: Carboxylyase-related protein; KEGG: gsu:GSU0437 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_899984.1 PFAM: Allergen V5/Tpx-1 family protein; KEGG: gsu:GSU1168 hypothetical protein YP_899985.1 KEGG: gsu:GSU1023 glycogen synthase; TIGRFAM: glycogen/starch synthases, ADP-glucose type; PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein YP_899986.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_899987.1 SMART: TRASH domain protein; KEGG: gsu:GSU2978 hypothetical protein YP_899988.1 KEGG: gme:Gmet_0495 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HppK; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YP_899989.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: gme:Gmet_0823 3-beta hydroxysteroid dehydrogenase/isomerase YP_899990.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: gsu:GSU0097 pyruvate ferredoxin/flavodoxin oxidoreductase YP_899991.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_899992.1 PFAM: conserved hypothetical protein 103; KEGG: gsu:GSU0095 conserved hypothetical protein TIGR00103 YP_899993.1 KEGG: gme:Gmet_3422 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase YP_899994.1 PFAM: purine and other phosphorylases, family 1; KEGG: gsu:GSU1897 MTA/SAH nucleosidase, putative YP_899995.1 PFAM: MOSC domain containing protein; KEGG: gme:Gmet_0302 MOSC YP_899996.1 KEGG: gsu:GSU3146 molybdenum cofactor biosynthesis protein A, putative; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB YP_899997.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: gsu:GSU3147 molybdopterin-guanine dinucleotide biosynthesis protein MobB YP_899998.1 KEGG: gsu:GSU3248 hypothetical protein YP_899999.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: gme:Gmet_3185 iron-sulfur cluster-binding protein YP_900000.1 PFAM: Appr-1-p processing domain protein; KEGG: gme:Gmet_3007 Appr-1-p processing YP_900001.1 PFAM: protein of unknown function DUF450; KEGG: hit:NTHI1502 hypothetical protein YP_900002.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_2545 ABC transporter-related protein YP_900003.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: gvi:gsl2857 hypothetical protein YP_900004.1 PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; KEGG: dde:Dde_1050 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_900005.1 PFAM: protein of unknown function UPF0047; KEGG: dde:Dde_3175 hypothetical protein YP_900006.1 PFAM: heat shock protein Hsp20; KEGG: gsu:GSU2409 heat shock protein, HSP20 family YP_900007.1 PFAM: heat shock protein Hsp20; KEGG: gsu:GSU2410 heat shock protein, HSP20 family YP_900008.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: gme:Gmet_2714 metal dependent phosphohydrolase YP_900010.1 PFAM: pentapeptide repeat protein; KEGG: mba:Mbar_A0710 hypothetical protein YP_900011.1 PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: dps:DP1201 related to pyruvate synthase, subunit PorB YP_900012.1 PFAM: type IV pilus assembly PilZ; KEGG: gsu:GSU1240 hypothetical protein YP_900013.1 KEGG: sat:SYN_02383 phosphoenolpyruvate synthase YP_900014.1 TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: ctc:CTC02528 pyruvate synthase subunit porC YP_900015.1 TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tma:TM0016 pyruvate ferredoxin oxidoreductase, delta subunit YP_900016.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: ctc:CTC02526 pyruvate synthase subunit porA YP_900017.1 PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: ctc:CTC02525 pyruvate synthase subunit porB YP_900018.1 PFAM: nitroreductase; KEGG: sat:SYN_01293 oxygen-insensitive NAD(P)H nitroreductase / dihydropteridine reductase YP_900019.1 PFAM: Auxin Efflux Carrier; KEGG: reu:Reut_A0908 auxin efflux carrier YP_900020.1 KEGG: pca:Pcar_0618 hypothetical protein YP_900021.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: gme:Gmet_0811 RND efflux system, outer membrane lipoprotein, NodT YP_900022.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: gsu:GSU2696 AcrB/AcrD/AcrF family protein YP_900023.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gme:Gmet_0809 secretion protein HlyD YP_900024.1 PFAM: regulatory protein, TetR; KEGG: gsu:GSU2698 transcriptional regulator, TetR family YP_900025.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: pca:Pcar_2331 thioredoxin-like proteins and domains-like YP_900026.1 PFAM: PemK family protein; KEGG: gsu:GSU0736 PemK protein, putative YP_900027.1 KEGG: gme:Gmet_2602 hypothetical protein YP_900028.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: gsu:GSU0739 NAD-dependent dehydrogenase subunit YP_900029.1 KEGG: gsu:GSU0740 NAD-dependent dehydrogenase subunit YP_900030.1 KEGG: gme:Gmet_2599 NAD-dependent dehydrogenase subunit YP_900031.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: gsu:GSU0742 NAD-dependent dehydrogenase subunit YP_900032.1 PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; KEGG: gsu:GSU0743 NAD-dependent dehydrogenase subunit YP_900033.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: gme:Gmet_0369 NADH ubiquinone oxidoreductase, 20 kDa subunit YP_900034.1 TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: gme:Gmet_2354 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YP_900035.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent YP_900036.1 KEGG: pca:Pcar_2104 hypothetical protein YP_900037.1 PFAM: cobalamin synthesis protein, P47K; KEGG: rpa:RPA1390 hypothetical protein YP_900038.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT1755 ABC transporter, ATP-binding protein YP_900039.1 KEGG: dsy:DSY1098 hypothetical protein YP_900040.1 involved in the peptidyltransferase reaction during translation YP_900041.1 PFAM: ribosomal protein L21; KEGG: gme:Gmet_3195 ribosomal protein L21 YP_900042.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: gme:Gmet_3192 ribonuclease E and G YP_900043.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gme:Gmet_3191 radical SAM YP_900044.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; EcoEI R, C-terminal domain protein; SMART: DEAD-like helicases-like; KEGG: dde:Dde_2499 DEAD/DEAH box helicase-like YP_900045.1 PFAM: N-6 DNA methylase; KEGG: dde:Dde_2498 type I restriction-modification system, M subunit YP_900046.1 KEGG: dde:Dde_2497 hypothetical protein YP_900047.1 PFAM: restriction modification system DNA specificity domain; KEGG: noc:Noc_3030 restriction modification system DNA specificity domain YP_900048.1 KEGG: pca:Pcar_1626 hypothetical protein YP_900049.1 KEGG: sdn:Sden_2992 hypothetical protein YP_900052.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ppr:PBPRC0049 putative cyclopropane fatty acid synthase YP_900053.1 KEGG: sdn:Sden_2995 hypothetical protein YP_900054.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: sdn:Sden_2996 AAA ATPase, central region YP_900055.1 KEGG: sdn:Sden_2997 hypothetical protein YP_900056.1 KEGG: sdn:Sden_2998 hypothetical protein YP_900057.1 KEGG: sdn:Sden_2999 hypothetical protein YP_900058.1 KEGG: sdn:Sden_3000 hypothetical protein YP_900059.1 PFAM: GPW/gp25 family protein; KEGG: sdn:Sden_3001 gpW/GP25 YP_900060.1 PFAM: PAAR repeat-containing protein; KEGG: sdn:Sden_3002 PaaR YP_900061.1 TIGRFAM: Rhs element Vgr protein; KEGG: sdn:Sden_3003 rhs element Vgr protein YP_900062.1 KEGG: sdn:Sden_3004 hypothetical protein YP_900063.1 TIGRFAM: conserved hypothetical phage tail protein; KEGG: sdn:Sden_3005 hypothetical protein YP_900064.1 TIGRFAM: conserved hypothetical phage tail protein; KEGG: sdn:Sden_3006 hypothetical protein YP_900065.1 KEGG: sdn:Sden_3007 hypothetical protein YP_900066.1 KEGG: sdn:Sden_3008 hypothetical protein YP_900067.1 KEGG: sdn:Sden_3009 hypothetical protein YP_900068.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: sth:STH921 two-component response regulator YP_900069.1 KEGG: pca:Pcar_2854 signal transduction histidine kinase regulating C4-dicarboxylate transport system-like; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_900070.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: gsu:GSU1250 sigma-54 dependent DNA-binding response regulator YP_900072.1 KEGG: gme:Gmet_0363 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; PFAM: phospholipid/glycerol acyltransferase YP_900073.1 KEGG: gsu:GSU3115 hypothetical protein YP_900074.1 KEGG: gme:Gmet_0365 hypothetical protein YP_900075.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: gme:Gmet_0366 hypothetical protein YP_900076.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU0913 ABC transporter, ATP-binding protein YP_900077.1 KEGG: gsu:GSU2971 hypothetical protein YP_900079.1 TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: gme:Gmet_1573 corrinoid adenosyltransferase BtuR/CobO/CobP YP_900080.1 PFAM: cobalamin B12-binding domain protein; KEGG: gsu:GSU1578 B12-binding protein YP_900081.1 KEGG: gsu:GSU1579 LAO/AO transport system ATPase; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; SMART: AAA ATPase YP_900083.1 KEGG: gme:Gmet_2781 hypothetical protein YP_900084.1 KEGG: gme:Gmet_2780 hypothetical protein YP_900085.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; KEGG: gme:Gmet_2556 peptidoglycan-binding LysM:lytic transglycosylase, catalytic YP_900086.1 KEGG: gme:Gmet_2555 hypothetical protein YP_900087.1 KEGG: reu:Reut_A2150 hypothetical protein YP_900088.1 PFAM: von Willebrand factor, type A; OmpA/MotB domain protein; KEGG: pae:PA1777 outer membrane protein OprF precursor YP_900089.1 KEGG: bxe:Bxe_B0717 hypothetical protein YP_900090.1 KEGG: gme:Gmet_2223 transcriptional regulator, NifA subfamily, fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; AAA ATPase YP_900091.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: syn:sll1783 hypothetical protein YP_900092.1 KEGG: sat:SYN_02957 hypothetical membrane protein YP_900093.1 PFAM: Paraquat-inducible protein A; KEGG: rme:Rmet_0581 paraquat-inducible protein A YP_900094.1 PFAM: Paraquat-inducible protein A; KEGG: rme:Rmet_4089 hypothetical protein YP_900095.1 PFAM: Mammalian cell entry related domain protein; KEGG: rme:Rmet_4088 mammalian cell entry related YP_900096.1 PFAM: protein of unknown function DUF330; KEGG: sat:SYN_02067 hypothetical protein YP_900097.1 PFAM: protein of unknown function UPF0118; KEGG: sat:SYN_02943 hypothetical membrane protein YP_900098.1 KEGG: aba:Acid345_4080 hypothetical protein YP_900099.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: aba:Acid345_4079 alpha amylase YP_900100.1 KEGG: reu:Reut_A1205 hypothetical protein YP_900102.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: reu:Reut_A3063 secretion protein HlyD YP_900103.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rme:Rmet_1702 hydrophobe/amphiphile efflux-1 HAE1 YP_900104.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sat:SYN_02946 type I secretion outer membrane protein YP_900105.1 PFAM: Ion transport 2 domain protein,; KEGG: rba:RB9536 hypothetical protein YP_900106.1 KEGG: mca:MCA2285 hypothetical protein YP_900107.1 KEGG: gvi:glr0998 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35 YP_900108.1 PFAM: sodium/hydrogen exchanger; KEGG: mba:Mbar_A3070 Na(+)/H(+) antiporter YP_900109.1 KEGG: rme:Rmet_1695 hypothetical protein YP_900110.1 KEGG: gme:Gmet_1198 hypothetical protein YP_900111.1 KEGG: aba:Acid345_3295 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain YP_900112.1 PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: gme:Gmet_3279 GAF sensor signal transduction histidine kinase YP_900113.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: gsu:GSU0284 dnaK suppressor protein YP_900114.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_900115.1 PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: gsu:GSU0286 PBS lyase heat-like repeat protein YP_900116.1 PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: gme:Gmet_3274 PBS lyase heat-like repeat protein YP_900117.1 PFAM: glycosyl transferase, family 51; KEGG: gsu:GSU0116 transglycosylase YP_900118.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_900119.1 PFAM: 4-vinyl reductase, 4VR; KEGG: mhu:Mhun_2966 4-vinyl reductase, 4VR YP_900120.1 KEGG: sth:STH3108 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein YP_900121.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: gme:Gmet_3043 DEAD/DEAH box helicase-like YP_900122.1 KEGG: gme:Gmet_2684 methylthioadenosine phosphorylase; TIGRFAM: methylthioadenosine phosphorylase; PFAM: purine phosphorylase, family 2 YP_900123.1 PFAM: PfkB domain protein; KEGG: gsu:GSU1113 carbohydrate kinase, PfkB family YP_900124.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gsu:GSU1114 TPR domain protein YP_900125.1 KEGG: gme:Gmet_2681 transcriptional regulator, putative YP_900126.1 PFAM: response regulator receiver; KEGG: gme:Gmet_2679 response regulator receiver domain protein (CheY-like) YP_900127.1 PFAM: UspA domain protein; KEGG: gme:Gmet_2678 UspA YP_900128.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: gsu:GSU1119 sensor histidine kinase/response regulator YP_900129.1 PFAM: response regulator receiver; KEGG: gsu:GSU1120 response regulator YP_900130.1 PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: gme:Gmet_2676 FAD dependent oxidoreductase YP_900131.1 KEGG: gme:Gmet_2675 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: nucleic acid binding, OB-fold, tRNA/helicase-type; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region YP_900132.1 PFAM: Thrombospondin type 3 repeat; OmpA/MotB domain protein; KEGG: gsu:GSU0360 OmpA domain protein YP_900133.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_900135.1 KEGG: gme:Gmet_0022 hypothetical protein YP_900137.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_3423 ABC transporter-related protein YP_900138.1 PFAM: type IV pilus assembly PilZ; KEGG: pca:Pcar_2258 hypothetical protein YP_900139.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: gsu:GSU3117 single-strand binding protein YP_900140.1 KEGG: gme:Gmet_0188 ribonuclease Z YP_900141.1 PFAM: triphosphoribosyl-dephospho-CoA protein; KEGG: gsu:GSU0806 ATP:dephospho-CoA triphosphoribosyl transferase YP_900142.1 TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: pca:Pcar_1038 isocitrate dehydrogenase YP_900143.1 KEGG: gme:Gmet_2994 xylose isomerase-like TIM barrel; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease, family 2 YP_900144.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: gme:Gmet_1038 molybdopterin biosynthesis protein MoeA YP_900145.1 PFAM: sigma-54 factor, interaction domain-containing protein; GAF domain protein; SMART: AAA ATPase; KEGG: gme:Gmet_0763 putative GAF sensor protein YP_900146.1 KEGG: lpf:lpl0065 hypothetical protein YP_900147.1 KEGG: bxe:Bxe_C0711 hypothetical protein YP_900148.1 PFAM: Integrase, catalytic region; KEGG: rme:Rmet_6335 integrase, catalytic region YP_900150.1 KEGG: bxe:Bxe_C0709 putative ATPase YP_900153.1 KEGG: noc:Noc_2743 hypothetical protein YP_900154.1 KEGG: ppu:PP1661 dehydrogenase subunit, putative YP_900155.1 PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase-like; KEGG: gme:Gmet_1045 aldehyde ferredoxin oxidoreductase YP_900156.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: gme:Gmet_3171 rubredoxin-type Fe(Cys)4 protein YP_900157.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: gme:Gmet_0148 4Fe-4S ferredoxin, iron-sulfur binding protein YP_900158.1 PFAM: Rubrerythrin; KEGG: pca:Pcar_1315 hypothetical protein YP_900159.1 PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: mth:MTH1738 pyruvate ferredoxin oxidoreductase, beta subunit YP_900160.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: mta:Moth_1922 pyruvate flavodoxin/ferredoxin oxidoreductase-like YP_900161.1 TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pai:PAE3276 2-ketoacid ferredoxin oxidoreductase delta subunit YP_900162.1 TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: tko:TK1978 pyruvate/2-oxoisovalerate: ferredoxin oxidoreductases, common gamma subunit YP_900163.1 activates fatty acids by binding to coenzyme A YP_900164.1 PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: mma:MM2394 transcriptional regulator, MerR family YP_900165.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: gme:Gmet_1577 ErfK/YbiS/YcfS/YnhG YP_900166.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: gme:Gmet_1649 outer membrane chaperone Skp (OmpH) YP_900167.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: ade:Adeh_2260 4Fe-4S ferredoxin, iron-sulfur binding protein YP_900168.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_900169.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: gme:Gmet_1162 tetrahydrofolate dehydrogenase/cyclohydrolase YP_900170.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: gme:Gmet_1159 UTP--glucose-1-phosphate uridylyltransferase YP_900171.1 KEGG: gsu:GSU3244 hypothetical protein YP_900172.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: gsu:GSU3246 thioredoxin peroxidase YP_900173.1 KEGG: gme:Gmet_0693 hypothetical protein YP_900174.1 PFAM: nitrogen regulatory protein P-II; KEGG: gsu:GSU0939 nitrogen regulatory protein P-II, putative YP_900175.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: pca:Pcar_1022 ammonium transporter YP_900176.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: gsu:GSU0940 ammonium transporter YP_900177.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: gsu:GSU0941 sensor histidine kinase, putative YP_900178.1 PFAM: Rare lipoprotein A; KEGG: gme:Gmet_3379 rare lipoprotein A YP_900179.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KEGG: gsu:GSU0385 NADH dehydrogenase subunit, putative YP_900180.1 KEGG: gme:Gmet_0269 hypothetical protein YP_900181.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sat:SYN_02005 response regulator protein with GGDEF domain YP_900182.1 KEGG: gsu:GSU0353 hypothetical protein YP_900183.1 PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: gme:Gmet_3086 transcriptional regulator, putative YP_900184.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: gme:Gmet_3083 HAD-superfamily hydrolase, subfamily IA, variant 1 YP_900185.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_900188.1 KEGG: gme:Gmet_3547 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_900189.1 KEGG: gme:Gmet_0102 hypothetical protein YP_900190.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_900191.1 KEGG: gsu:GSU1927 sensory box/response regulator; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-3 domain protein; SMART: PAS domain containing protein YP_900193.1 KEGG: pca:Pcar_3099 hypothetical protein YP_900194.1 KEGG: xac:XAC0467 hypothetical protein YP_900196.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: gsu:GSU1879 DNA-binding response regulator YP_900197.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: gme:Gmet_1292 histidine kinase YP_900198.1 SMART: helicase c2; DEAD-like helicases-like; KEGG: gme:Gmet_3167 helicase C2 YP_900199.1 KEGG: gsu:GSU3379 translation initiation factor, putative, aIF-2BI family; TIGRFAM: putative translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized proteins; PFAM: initiation factor 2B related YP_900200.1 PFAM: glutamate-ammonia ligase adenylyltransferase; KEGG: gme:Gmet_0071 glutamate-ammonia ligase adenylyltransferase YP_900201.1 KEGG: gsu:GSU0131 hypothetical protein YP_900202.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: gsu:GSU0130 methionyl-tRNA formyltransferase YP_900203.1 KEGG: gme:Gmet_3338 formylmethionine deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_900204.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; HDOD; KEGG: gme:Gmet_0464 metal dependent phosphohydrolase YP_900205.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gsu:GSU3191 TPR domain protein YP_900206.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: gme:Gmet_2918 alpha amylase, catalytic region YP_900207.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_900208.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_900209.1 KEGG: gsu:GSU3306 hypothetical protein YP_900210.1 KEGG: gsu:GSU3304 LamB porin family protein, putative YP_900211.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: gsu:GSU3303 methylmalonyl-CoA epimerase YP_900212.1 KEGG: gsu:GSU3302 methylmalonyl-CoA mutase, putative; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase YP_900213.1 PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: gme:Gmet_3247 transcriptional regulator, XRE family YP_900214.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: gsu:GSU3297 iron-sulfur cluster-binding protein YP_900215.1 PFAM: transposase, IS4 family protein; KEGG: eba:p2A202 transposase YP_900216.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine YP_900217.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining; maintains net negative superhelicity YP_900218.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: gsu:GSU2550 DNA processing protein DprA YP_900219.1 PFAM: Peptidoglycan-binding LysM; KEGG: gsu:GSU2551 LysM domain protein YP_900220.1 KEGG: gsu:GSU2552 lipoprotein, putative YP_900221.1 PFAM: peptidase U32; KEGG: gsu:GSU2556 peptidase, U32 family YP_900222.1 PFAM: glycosyl transferase, family 39; KEGG: gme:Gmet_0887 glycosyl transferase, family 39 YP_900223.1 KEGG: gsu:GSU0998 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase YP_900224.1 PFAM: General secretory system II, protein E domain protein; KEGG: gme:Gmet_3401 general secretory system II, protein E-like YP_900225.1 KEGG: gsu:GSU0436 twitching motility protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase YP_900226.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: gsu:GSU2704 molybdenum cofactor biosynthesis protein MoaC YP_900227.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; KEGG: gme:Gmet_1036 molybdopterin binding domain YP_900228.1 PFAM: SMC domain protein; KEGG: cvi:CV1280 hypothetical protein YP_900230.1 KEGG: gme:Gmet_1036 molybdopterin binding domain YP_900231.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ana:alr3504 unknown protein YP_900232.1 KEGG: gsu:GSU0819 hypothetical protein YP_900233.1 PFAM: Excinuclease ABC, C subunit domain protein; KEGG: gme:Gmet_1438 excinuclease ABC, C subunit-like YP_900234.1 PFAM: YaeQ family protein; KEGG: gme:Gmet_1726 YaeQ YP_900235.1 PFAM: sodium:dicarboxylate symporter; KEGG: sat:SYN_01421 proton/sodium-glutamate symport protein YP_900236.1 KEGG: gvi:gll0911 hypothetical protein YP_900237.1 TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: mth:MTH537 2-oxoglutarate ferredoxin oxidoreductase, beta subunit YP_900238.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: tma:TM1164 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit YP_900239.1 catalyzes the formation of fumarate from aspartate YP_900242.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: cch:Cag_1152 OmpA family protein YP_900243.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: gme:Gmet_1046 iron-containing alcohol dehydrogenase YP_900245.1 PFAM: Radical SAM domain protein; Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gsu:GSU2873 radical SAM domain protein YP_900246.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: gme:Gmet_0340 cold-shock DNA-binding domain protein YP_900247.1 PFAM: toluene tolerance family protein; KEGG: gme:Gmet_0784 toluene tolerance YP_900248.1 PFAM: VacJ family lipoprotein; KEGG: sat:SYN_01266 surface lipoprotein YP_900249.1 PFAM: Mammalian cell entry related domain protein; KEGG: gme:Gmet_0786 mammalian cell entry-related protein YP_900250.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU0816 ABC transporter, ATP-binding protein YP_900251.1 PFAM: protein of unknown function DUF140; KEGG: gsu:GSU0817 putative ABC transport system permease protein YP_900252.1 KEGG: gsu:GSU0697 ceramide glucosyltransferase, putative YP_900253.1 PFAM: putative rRNA methylase; KEGG: gsu:GSU0690 hypothetical protein YP_900254.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: gme:Gmet_0047 pseudouridine synthase, RluD YP_900255.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate YP_900256.1 KEGG: gsu:GSU2486 hypothetical protein YP_900257.1 PFAM: Rhomboid family protein; KEGG: gme:Gmet_1151 rhomboid-like protein YP_900259.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: gme:Gmet_1817 PpiC-type peptidyl-prolyl cis-trans isomerase YP_900260.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: gme:Gmet_3487 ErfK/YbiS/YcfS/YnhG YP_900261.1 KEGG: gme:Gmet_3486 lipoprotein, putative YP_900262.1 PFAM: Peptidoglycan-binding LysM; ErfK/YbiS/YcfS/YnhG family protein; Sporulation domain protein; KEGG: gme:Gmet_3485 ErfK/YbiS/YcfS/YnhG YP_900263.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: mbu:Mbur_1693 pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_900265.1 KEGG: dra:DRB0112 hypothetical protein YP_900267.1 PFAM: glycosyl transferase, family 2; KEGG: gsu:GSU3023 glycosyl transferase, group 1/2 family protein YP_900268.1 KEGG: fra:Francci3_1867 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib YP_900269.1 PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase-like; KEGG: gme:Gmet_1045 aldehyde ferredoxin oxidoreductase YP_900271.1 PFAM: sigma-54 factor, interaction domain-containing protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: ade:Adeh_3199 transcriptional regulator, fis family YP_900272.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: gsu:GSU0106 soj protein YP_900273.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: gme:Gmet_3412 ParB-like partition protein YP_900275.1 KEGG: gme:Gmet_1454 hypothetical protein YP_900276.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: gka:GK3347 NADH:ubiquinone oxidoreductase subunit 5 (chain L) YP_900277.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: chy:CHY_1832 carbon monoxide-induced hydrogenase, membrane anchor subunit YP_900278.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: bha:BH1316 Na+/H+ antiporter YP_900279.1 KEGG: wbm:Wbm0390 multisubunit Na+/H+ antiporter, MnhB subunit YP_900280.1 PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: pfu:PF1448 putative multicomponent Na+:H+ antiporter subunit C YP_900282.1 TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: dvu:DVU0432 Ech hydrogenase, subunit EchC, putative YP_900283.1 PFAM: NADH dehydrogenase (ubiquinone), 30 kDa subunit; KEGG: mma:MM2489 F420H2 dehydrogenase subunit YP_900284.1 PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; KEGG: tte:TTE0127 NADH:ubiquinone oxidoreductase 49 kD subunit 7 YP_900285.1 PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: chy:CHY_1831 carbon monoxide-induced hydrogenase, CooK subunit YP_900286.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pho:PH1440 136aa long hypothetical protein YP_900287.1 TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52, hydrogen uptake protein; KEGG: mja:MJ0631 hydrogenase maturation protease (HycI) YP_900288.1 TIGRFAM: ATP synthase F0, A subunit; PFAM: H+-transporting two-sector ATPase, A subunit; KEGG: gme:Gmet_3359 H+-transporting two-sector ATPase, A subunit YP_900289.1 TIGRFAM: ATP synthase F0, C subunit; PFAM: H+-transporting two-sector ATPase, C subunit; KEGG: gme:Gmet_3360 ATP synthase F0, C subunit YP_900290.1 PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: gsu:GSU0108 ATP synthase F0, B' subunit, putative YP_900291.1 PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: gme:Gmet_3410 H+-transporting two-sector ATPase, B/B' subunit YP_900292.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_900293.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_900294.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the gamma chain is a regulatory subunit YP_900295.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_900296.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex YP_900297.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_900298.1 KEGG: gme:Gmet_3163 hypothetical protein; TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_900299.1 PFAM: K+ potassium transporter; KEGG: gme:Gmet_0039 K+ potassium transporter YP_900300.1 KEGG: sat:SYN_01039 hypothetical cytosolic protein YP_900301.1 ACT domain-containing protein YP_900302.1 PFAM: protein of unknown function DUF711; KEGG: pca:Pcar_2119 conserved hypothetical cytosolic protein YP_900303.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pca:Pcar_0494 Mg-protoporphyrin IX monomethyl ester oxidative cyclase YP_900304.1 KEGG: gme:Gmet_3529 capsule biosynthesis protein, putative YP_900305.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_900306.1 TIGRFAM: yecA family protein; PFAM: SEC-C motif domain protein; KEGG: rpa:RPA2163 sec-C motif YP_900307.1 PFAM: RNA-binding S4 domain protein; KEGG: gme:Gmet_0098 RNA-binding S4 YP_900308.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_900309.1 KEGG: gme:Gmet_3327 hypothetical protein YP_900310.1 KEGG: gme:Gmet_3326 hypothetical protein YP_900311.1 PFAM: aminotransferase, class I and II; KEGG: gme:Gmet_3325 hypothetical protein YP_900312.1 PFAM: aconitate hydratase domain protein; KEGG: gsu:GSU1902 3-isopropylmalate dehydratase, small subunit, putative YP_900313.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis YP_900314.1 KEGG: gme:Gmet_0193 hypothetical protein YP_900315.1 PFAM: protein of unknown function DUF111; KEGG: gme:Gmet_0194 hypothetical protein YP_900316.1 TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: gsu:GSU0143 competence/damage-inducible protein CinA YP_900317.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; KEGG: bbr:BB3841 probable NADH-ubiquinone oxidoreductase chain 3 YP_900318.1 KEGG: ade:Adeh_2569 NADH-quinone oxidoreductase, B subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit YP_900319.1 TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone), 30 kDa subunit; KEGG: atc:AGR_C_2342 NADH dehydrogenase I chain C YP_900320.1 PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; KEGG: ade:Adeh_2567 NADH dehydrogenase (ubiquinone) YP_900321.1 TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: lpp:lpp2832 NADH dehydrogenase I chain E YP_900322.1 PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: bba:Bd3083 NADH dehydrogenase I, F subunit YP_900323.1 PFAM: ferredoxin; molybdopterin oxidoreductase Fe4S4 region; KEGG: ade:Adeh_2566 ferredoxin YP_900324.1 PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: ade:Adeh_2565 respiratory-chain NADH dehydrogenase, subunit 1 YP_900325.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: ade:Adeh_2564 4Fe-4S ferredoxin, iron-sulfur binding protein YP_900326.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: bte:BTH_I1070 NADH dehydrogenase I, J subunit YP_900327.1 PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: ade:Adeh_4197 NADH-ubiquinone oxidoreductase, chain 4L YP_900328.1 KEGG: bba:Bd3888 NADH dehydrogenase I chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I) YP_900329.1 KEGG: gme:Gmet_3343 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_900330.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: nmu:Nmul_A1104 proton-translocating NADH-quinone oxidoreductase, chain N YP_900331.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_900332.1 PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: gme:Gmet_3222 nitrite and sulphite reductase 4Fe-4S region YP_900333.1 KEGG: gsu:GSU1476 hypothetical protein YP_900334.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: gsu:GSU1475 RNA methyltransferase, TrmH family, group 1 YP_900335.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: gsu:GSU1698 TPR domain protein YP_900336.1 KEGG: gme:Gmet_1366 hypothetical protein YP_900337.1 PFAM: histidine triad (HIT) protein; KEGG: gme:Gmet_1638 histidine triad (HIT) protein YP_900338.1 PFAM: ROK family protein; KEGG: gsu:GSU1702 ROK family protein YP_900339.1 KEGG: gme:Gmet_0943 hypothetical protein YP_900340.1 KEGG: gsu:GSU2063 HD domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; HDOD; SMART: metal-dependent phosphohydrolase, HD region YP_900341.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: gme:Gmet_0945 diguanylate cyclase (GGDEF domain) YP_900342.1 KEGG: gme:Gmet_1988 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_900343.1 KEGG: gsu:GSU1935 birA biofunctional protein, putative; TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix, type 11 domain protein YP_900344.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_900345.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_900346.1 PFAM: Sporulation domain protein; KEGG: gme:Gmet_1984 sporulation-related protein YP_900347.1 KEGG: gme:Gmet_1983 hypothetical protein YP_900348.1 KEGG: gme:Gmet_1982 GTP-binding domain protein YP_900349.1 KEGG: gme:Gmet_1980 hypothetical protein YP_900350.1 PFAM: transport-associated; KEGG: gsu:GSU1925 transport-associated domain protein YP_900351.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: gsu:GSU1448 PHP domain protein YP_900352.1 PFAM: HhH-GPD family protein; KEGG: gme:Gmet_1973 HhH-GPD YP_900353.1 TIGRFAM: RNA polymerase sigma factor RpoH; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: gsu:GSU0655 RNA polymerase sigma-32 factor YP_900354.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_900355.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif YP_900356.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_900357.1 KEGG: gsu:GSU2868 transcription antitermination protein NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein YP_900358.1 binds directly to 23S ribosomal RNA YP_900359.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_900360.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_900361.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_900362.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_900363.1 KEGG: gme:Gmet_0620 DNA-directed RNA polymerase, subunit beta-prime; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 4; SMART: RNA polymerase I subunit A domain protein YP_900364.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_900365.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_900366.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_900367.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_900368.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_900369.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_900370.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_900371.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_900372.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_900373.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_900374.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_900375.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_900376.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_900377.1 one of the stabilizing components for the large ribosomal subunit YP_900378.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_900379.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_900380.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_900381.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_900382.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif YP_900383.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_900384.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_900385.1 binds 5S rRNA along with protein L5 and L25 YP_900386.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_900387.1 PFAM: ribosomal protein L30; KEGG: chy:CHY_2291 ribosomal protein L30 YP_900388.1 late assembly protein YP_900389.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_900390.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_900391.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: gsu:GSU2835 methionine aminopeptidase, type I YP_900392.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_900393.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_900394.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_900395.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_900396.1 is a component of the macrolide binding site in the peptidyl transferase center YP_900397.1 KEGG: gsu:GSU1683 hypothetical protein YP_900398.1 KEGG: gme:Gmet_0777 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_900399.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: gme:Gmet_0776 two component, sigma54 specific, transcriptional regulator, fis family YP_900400.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_900401.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_900402.1 PFAM: response regulator receiver; KEGG: gsu:GSU2046 response regulator YP_900403.1 PFAM: beta-lactamase; KEGG: gsu:GSU2047 hypothetical protein YP_900404.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_900405.1 KEGG: gsu:GSU2816 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_900406.1 PFAM: GCN5-related N-acetyltransferase; ATP-binding region, ATPase domain protein domain protein; KEGG: pca:Pcar_1990 signal transduction histidine kinase regulating C4-dicarboxylate transport system-like YP_900407.1 PFAM: protein of unknown function DUF1458; KEGG: gsu:GSU0195 hypothetical protein YP_900408.1 KEGG: syn:sll1863 hypothetical protein YP_900409.1 PFAM: beta-lactamase domain protein; KEGG: gsu:GSU1123 metallo-beta-lactamase family protein YP_900410.1 TIGRFAM: putative regulatory protein, FmdB family; KEGG: gme:Gmet_2576 cytochrome c family protein, putative YP_900411.1 PFAM: NADPH-dependent FMN reductase; KEGG: gsu:GSU0179 NADPH-dependent FMN reductase domain protein YP_900412.1 KEGG: pae:PA0575 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_900413.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: gsu:GSU2942 methyl-accepting chemotaxis protein YP_900414.1 KEGG: reu:Reut_A1642 hypothetical protein YP_900415.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; KEGG: gsu:GSU2002 hypothetical protein YP_900416.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: mma:MM1632 iron-sulfur flavoprotein YP_900417.1 KEGG: pca:Pcar_2757 hypothetical protein YP_900418.1 PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; KEGG: gme:Gmet_0147 ferredoxin-dependent glutamate synthase YP_900419.1 PFAM: NUDIX hydrolase; KEGG: ath:At3g10620 diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase, putative YP_900420.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: rsp:RSP_0483 hypothetical protein YP_900421.1 PFAM: protein of unknown function DUF853, NPT hydrolase putative; KEGG: gme:Gmet_0767 protein of unknown function DUF853, NPT hydrolase putative YP_900422.1 PFAM: protein of unknown function DUF500; KEGG: pca:Pcar_3108 hypothetical protein YP_900423.1 PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: bca:BCE3284 D-3-phosphoglycerate dehydrogenase, putative YP_900424.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_900425.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: gsu:GSU1027 glycosyl hydrolase, family 10 YP_900426.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: gsu:GSU1028 peptidylarginine deiminase-related protein YP_900427.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_900428.1 KEGG: sat:SYN_00882 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_900429.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gme:Gmet_0101 radical SAM YP_900430.1 KEGG: gsu:GSU0294 HD domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; HDOD; SMART: metal-dependent phosphohydrolase, HD region YP_900431.1 KEGG: gsu:GSU0661 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_900432.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_900433.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_900434.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_900435.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_900436.1 TIGRFAM: serine O-acetyltransferase; KEGG: gme:Gmet_0870 serine O-acetyltransferase YP_900437.1 TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: gsu:GSU0994 fumarate hydratase, class I YP_900438.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_900439.1 PFAM: protein of unknown function DUF815; KEGG: gsu:GSU0214 hypothetical protein YP_900440.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: ade:Adeh_0252 cold-shock DNA-binding domain protein YP_900441.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_900442.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: gsu:GSU0914 ATP-dependent RNA helicase RhlE YP_900443.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_900444.1 KEGG: pca:Pcar_2758 putative alcohol dehydrogenase/acetaldehyde dehydrogenase YP_900446.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_900447.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_900448.1 KEGG: gsu:GSU0667 hypothetical protein YP_900449.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_900450.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: gme:Gmet_1153 hypothetical protein YP_900451.1 PFAM: AsmA family protein; KEGG: gsu:GSU0874 hypothetical protein YP_900452.1 PFAM: regulatory protein, TetR; KEGG: gsu:GSU3060 transcriptional regulator, TetR family YP_900453.1 TIGRFAM: squalene/oxidosqualene cyclases; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase; KEGG: gsu:GSU3061 squalene-hopene cyclase YP_900454.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: cvi:CV1628 hypothetical protein YP_900455.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gsu:GSU2781 efflux transporter, RND family, MFP subunit YP_900456.1 PFAM: acriflavin resistance protein; KEGG: gsu:GSU2782 AcrB/AcrD/AcrF family protein YP_900457.1 PFAM: glycosyl transferase, group 1; KEGG: mag:amb1267 glycosyltransferase YP_900460.1 PFAM: ferric-uptake regulator; KEGG: gme:Gmet_2445 ferric uptake regulator, FUR family YP_900461.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; Miro domain protein; KEGG: gme:Gmet_2444 ferrous iron transport protein B YP_900462.1 KEGG: gme:Gmet_2443 hypothetical protein YP_900463.1 PFAM: iron dependent repressor; FeoA family protein; KEGG: gsu:GSU1382 iron-dependent repressor, putative YP_900464.1 catalyzes the interconversion of 3-phosphoglycerate and 2-phosphoglycerate; this enzyme does not require the cofactor 2,3-bisphosphoglycerate as a phosphate donor; BPG-independent PGAM; aPGAM YP_900465.1 PFAM: nitroreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: dvu:DVU1220 nitroreductase family protein YP_900466.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pca:Pcar_0069 NADH oxidase-like YP_900467.1 PFAM: Radical SAM domain protein; KEGG: gme:Gmet_1006 radical SAM YP_900468.1 KEGG: gsu:GSU0852 lipoprotein, putative YP_900469.1 PFAM: Integral membrane protein TerC; KEGG: gsu:GSU1570 membrane protein, TerC family YP_900470.1 PFAM: protein of unknown function UPF0016; KEGG: gme:Gmet_1157 hypothetical protein YP_900471.1 PFAM: protein of unknown function UPF0118; KEGG: gme:Gmet_1154 hypothetical protein YP_900472.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: gsu:GSU1204 sodium/hydrogen exchanger family/TrkA domain protein YP_900473.1 PFAM: import inner membrane translocase, subunit Tim44; KEGG: gme:Gmet_1927 import inner membrane translocase, subunit Tim44 YP_900474.1 PFAM: Integral membrane protein TerC; KEGG: gme:Gmet_1782 integral membrane protein TerC YP_900475.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: gsu:GSU1569 transcriptional regulator, CopG family YP_900476.1 KEGG: gsu:GSU3273 hypothetical protein YP_900477.1 KEGG: gme:Gmet_2832 hypothetical protein YP_900478.1 KEGG: cte:CT0395 hypothetical protein YP_900479.1 PFAM: FeoA family protein; KEGG: gsu:GSU3270 FeoA family protein YP_900480.1 PFAM: FeoA family protein; KEGG: ade:Adeh_3292 FeoA YP_900481.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: gsu:GSU3268 ferrous iron transport protein B YP_900482.1 KEGG: gsu:GSU3267 hypothetical protein YP_900483.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; FeoA family protein; KEGG: ppu:PP1411 GGDEF domain protein YP_900484.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: dde:Dde_1151 metal dependent phosphohydrolase YP_900485.1 KEGG: gsu:GSU1569 transcriptional regulator, CopG family YP_900486.1 TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; KEGG: pca:Pcar_0860 flavodoxins YP_900487.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pca:Pcar_0861 hypothetical protein YP_900488.1 PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: gsu:GSU2043 type 4 prepilin-like proteins leader peptide processing enzyme YP_900489.1 PFAM: conserved hypothetical protein 103; KEGG: gsu:GSU0095 conserved hypothetical protein TIGR00103 YP_900490.1 KEGG: pcu:pc0812 hypothetical protein YP_900491.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: rru:Rru_A1456 transcriptional regulator, AraC family YP_900492.1 PFAM: Endoribonuclease L-PSP; KEGG: bth:BT2475 putative translation initiation inhibitor YP_900493.1 KEGG: hch:HCH_00181 predicted periplasmic lipoprotein YP_900494.1 KEGG: mfa:Mfla_1600 hypothetical protein YP_900497.1 KEGG: tbd:Tbd_1441 type II secretion system protein G YP_900502.1 KEGG: tte:TTE1263 predicted ATPases involved in pili biogenesis, PilT homologs; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase YP_900503.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: tte:TTE1262 predicted ATPases involved in pili biogenesis, PilB homologs YP_900504.1 PFAM: type II secretion system protein; KEGG: ttj:TTHA0794 pilus assembly protein PilC YP_900506.1 PFAM: type II and III secretion system protein; KEGG: pca:Pcar_0870 type II secretory pathway component PulD-like YP_900507.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: cvi:CV3685 probable MoxR like protein YP_900508.1 PFAM: protein of unknown function DUF58; KEGG: mca:MCA0467 hypothetical protein YP_900509.1 PFAM: transglutaminase domain protein; KEGG: mfa:Mfla_1839 transglutaminase-like protein YP_900510.1 PFAM: iron permease FTR1; KEGG: mag:amb0937 high-affinity Fe2+/Pb2+ permease YP_900511.1 KEGG: pca:Pcar_0876 general secretion pathway protein G YP_900512.1 KEGG: pca:Pcar_0877 hypothetical protein YP_900513.1 KEGG: cyb:CYB_2269 putative iron-regulated protein A YP_900514.1 PFAM: Lytic transglycosylase, catalytic; KEGG: gsu:GSU1826 lytic murein transglycosylase, putative YP_900515.1 KEGG: gsu:GSU3274 cytochrome c family protein, putative YP_900516.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive YP_900517.1 PFAM: zinc/iron permease; KEGG: dps:DP0096 GufA protein YP_900518.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: reu:Reut_A3299 regulatory protein, MerR YP_900519.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rso:RS05448 probable metal-transporting P-type ATPase transmembrane protein YP_900521.1 PFAM: protein of unknown function DUF190; KEGG: gsu:GSU0504 hypothetical protein YP_900522.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_900524.1 PFAM: Cl- channel, voltage-gated family protein; KEGG: gox:GOX2145 hypothetical protein YP_900525.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pca:Pcar_1394 radical SAM domain protein YP_900528.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: gme:Gmet_0520 arsenical-resistance protein ACR3 YP_900529.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: gme:Gmet_0521 protein tyrosine phosphatase YP_900530.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: gsu:GSU0264 drug resistance transporter, Bcr/CflA family YP_900531.1 KEGG: mca:MCA2708 ATP synthase F1, gamma subunit YP_900532.1 produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit YP_900533.1 KEGG: mca:MCA2701 ATP synthase F1, delta subunit, putative YP_900534.1 TIGRFAM: ATP synthase F0, C subunit; PFAM: H+-transporting two-sector ATPase, C subunit; KEGG: lpp:lpp2332 F-type H+-transporting ATPase c chain YP_900535.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit A is part of the membrane proton channel F0 YP_900536.1 KEGG: mca:MCA2698 putative ATP synthase protein I YP_900537.1 KEGG: lpn:lpg1053 F0F1-type ATP synthase epsilon subunit-like YP_900538.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit YP_900539.1 KEGG: reu:Reut_C6077 conserved hypothetical protein Rv2307c YP_900540.1 KEGG: mac:MA1947 hypothetical protein YP_900541.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: gsu:GSU2958 thiol:disulfide interchange protein, putative YP_900542.1 PFAM: Thioredoxin domain; KEGG: gme:Gmet_0517 thioredoxin-related protein YP_900543.1 TIGRFAM: redox-active disulfide protein 2; PFAM: glutaredoxin; KEGG: gsu:GSU2956 redox-active disulfide protein 2 YP_900544.1 PFAM: permease; KEGG: gme:Gmet_0519 permease YP_900545.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; KEGG: rfr:Rfer_3145 carboxymuconolactone decarboxylase YP_900546.1 PFAM: major facilitator superfamily MFS_1; KEGG: pca:Pcar_2181 antibiotic resistance protein-like YP_900547.1 PFAM: regulatory protein, MarR; KEGG: bld:BLi03879 YwoH YP_900548.1 PFAM: transposase, IS4 family protein; KEGG: eba:p2A202 transposase YP_900549.1 KEGG: cte:CT1727 glutaredoxin family protein YP_900550.1 PFAM: regulatory protein, ArsR; KEGG: gsu:GSU2952 transcriptional regulator, ArsR family YP_900551.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: tbd:Tbd_1055 S-adenosylmethionine-dependent methyltransferase YP_900552.1 PFAM: protein of unknown function DUF182; KEGG: pca:Pcar_0227 hypothetical protein YP_900553.1 PFAM: NUDIX hydrolase; KEGG: pca:Pcar_2736 ADP-ribose pyrophosphatase-like YP_900554.1 KEGG: gme:Gmet_0679 cytochrome c family protein YP_900555.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: gsu:GSU0487 cation efflux family protein YP_900556.1 TIGRFAM: putative L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase, class I and II; aminotransferase class-III; KEGG: gme:Gmet_0487 L-threonine-O-3-phosphate decarboxylase YP_900557.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: gsu:GSU2990 cobalamin biosynthesis protein CobD YP_900558.1 TIGRFAM: cobyric acid synthase CobQ; precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: gme:Gmet_0485 cobyric acid synthase CobQ:precorrin-3B C17-methyltransferase region YP_900559.1 PFAM: Lytic transglycosylase, catalytic; KEGG: gsu:GSU0301 lytic murein transglycosylase, putative YP_900560.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; KEGG: gme:Gmet_3263 two component, sigma54 specific, transcriptional regulator, fis family YP_900561.1 PFAM: transposase, IS4 family protein; KEGG: eba:p2A202 transposase YP_900562.1 PFAM: sigma-54 factor, interaction domain-containing protein; KEGG: gme:Gmet_3263 two component, sigma54 specific, transcriptional regulator, fis family YP_900563.1 PFAM: CheW domain protein; KEGG: gsu:GSU0297 purine-binding chemotaxis protein CheW YP_900564.1 PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: gsu:GSU0296 chemotaxis protein CheA, putative YP_900565.1 PFAM: MCP methyltransferase, CheR-type; KEGG: gsu:GSU0295 chemotaxis protein methyltransferase CheR YP_900566.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; HDOD; KEGG: gme:Gmet_3268 metal dependent phosphohydrolase YP_900567.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: gsu:GSU0293 protein-glutamate methylesterase YP_900569.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein YP_900570.1 PFAM: DoxX family protein; KEGG: gsu:GSU0136 hypothetical protein YP_900571.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ava:Ava_3234 putative diguanylate cyclase (GGDEF domain) YP_900572.1 KEGG: tte:TTE0687 putative regulator of acetoin metabolism; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: AAA ATPase YP_900573.1 PFAM: molybdopterin binding domain; KEGG: dps:DP0565 putative competence/damage-inducible protein CinA N-terminal domain YP_900574.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: gme:Gmet_1046 iron-containing alcohol dehydrogenase YP_900575.1 PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase-like; KEGG: gme:Gmet_1045 aldehyde ferredoxin oxidoreductase YP_900576.1 PFAM: thiamineS protein; KEGG: pca:Pcar_1721 molybdopterin converting factor, subunit 1-like YP_900577.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: gme:Gmet_1043 UBA/ThiF-type NAD/FAD binding fold:MoeZ/MoeB YP_900578.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sat:SYN_00838 ABC-type tungstate transport permease protein YP_900579.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sat:SYN_00839 tungsten transporter ATP binding protein YP_900580.1 KEGG: pca:Pcar_2512 hypothetical protein YP_900581.1 KEGG: pfo:Pfl_2091 hypothetical protein YP_900582.1 KEGG: pca:Pcar_2986 hypothetical protein YP_900583.1 PFAM: transposase, IS4 family protein; KEGG: eba:p2A202 transposase YP_900586.1 KEGG: pca:Pcar_3008 hypothetical protein YP_900587.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sat:SYN_02542 hypothetical membrane protein YP_900588.1 KEGG: gme:Gmet_1668 putative transmembrane protein YP_900589.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: gsu:GSU1927 sensory box/response regulator YP_900590.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: dar:Daro_3350 response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal:Hpt YP_900591.1 KEGG: gsu:GSU1529 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_900592.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: pca:Pcar_2667 probable 3-oxoacyl-(acyl-carrier protein) reductase YP_900593.1 KEGG: pca:Pcar_2665 hypothetical protein YP_900594.1 PFAM: beta-ketoacyl synthase; KEGG: dps:DP1859 related to 3-oxoacyl-[acyl-carrier-protein] synthase I YP_900595.1 PFAM: phosphopantetheine-binding; KEGG: pca:Pcar_2663 related to acyl carrier protein YP_900596.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: pca:Pcar_2662 hypothetical protein YP_900597.1 KEGG: dps:DP1856 similar to coenzyme F390 synthetase YP_900598.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pca:Pcar_2660 coenzyme PQQ synthesis protein-like YP_900599.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: pca:Pcar_2658 outer membrane lipoprotein-sorting protein-like YP_900600.1 KEGG: pca:Pcar_2657 exporter-like YP_900602.1 KEGG: pca:Pcar_2655 hypothetical protein YP_900603.1 PFAM: thioesterase superfamily protein; KEGG: dps:DP1841 hypothetical protein YP_900604.1 PFAM: beta-ketoacyl synthase; KEGG: dps:DP1840 related to 3-oxoacyl-[acyl-carrier-protein] synthase YP_900605.1 KEGG: dps:DP1854 hypothetical protein YP_900606.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mta:Moth_0831 radical SAM YP_900607.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dps:DP1853 similar to methyltransferase YP_900608.1 PFAM: glycosyl transferase, family 2; KEGG: pca:Pcar_2653 dolichyl-phosphate mannose synthase-like YP_900609.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: dps:DP1851 hypothetical protein YP_900610.1 KEGG: pca:Pcar_2651 acyl-carrier protein-like YP_900611.1 PFAM: polysaccharide deacetylase; KEGG: sha:SH1754 hypothetical protein YP_900613.1 PFAM: beta-ketoacyl synthase; KEGG: pca:Pcar_2650 related to 3-oxoacyl-acyl carrier protein synthase YP_900614.1 PFAM: beta-ketoacyl synthase; KEGG: pca:Pcar_2649 3-oxoacyl-(acyl-carrier-protein) synthase-like YP_900615.1 PFAM: phosphopantetheine-binding YP_900618.1 PFAM: Pyridoxal-dependent decarboxylase; KEGG: gme:Gmet_1644 pyridoxal-dependent decarboxylase YP_900621.1 KEGG: sde:Sde_3085 response regulator receiver domain protein (CheY-like) YP_900624.1 PFAM: protein of unknown function DUF1486; KEGG: rsp:RSP_4013 hypothetical protein YP_900627.1 KEGG: nme:NMB1980 hypothetical protein YP_900628.1 KEGG: bxe:Bxe_C0711 hypothetical protein YP_900629.1 PFAM: Integrase, catalytic region; KEGG: rme:Rmet_6335 integrase, catalytic region YP_900630.1 KEGG: bxe:Bxe_C0709 putative ATPase YP_900632.1 KEGG: syf:Synpcc7942_0410 hypothetical protein YP_900633.1 KEGG: cbu:CBU_2085 hypothetical protein YP_900634.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_900636.1 PFAM: ribonuclease H; 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; KEGG: pca:Pcar_2864 5'-3' exonuclease (including N-terminal domain of PolI)-like YP_900637.1 KEGG: eba:ebB157 hypothetical protein of beta-lactamase-inhibitor family (Pfam) YP_900638.1 KEGG: gsu:GSU3386 lipoprotein, putative YP_900641.1 PFAM: YceI family protein; KEGG: gme:Gmet_3449 YceI YP_900642.1 KEGG: gme:Gmet_3378 lipoprotein, putative YP_900643.1 PFAM: Silent information regulator protein Sir2; KEGG: pca:Pcar_0631 NAD-dependent protein deacetylase SIR2 family-like YP_900644.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_900646.1 PFAM: protein of unknown function DUF150; KEGG: gsu:GSU1585 hypothetical protein YP_900647.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_900648.1 PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; protein of unknown function DUF448; KEGG: gme:Gmet_1585 hypothetical protein YP_900649.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_900650.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_900651.1 PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: gsu:GSU1590 DHH family/DHHA1 domain protein YP_900652.1 KEGG: gme:Gmet_1589 tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein YP_900653.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_900654.1 KEGG: gme:Gmet_1591 3' exoribonuclease:RNA binding S1:KH, type 1; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein YP_900655.1 KEGG: gme:Gmet_1278 KpsF/GutQ; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS) YP_900656.1 TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: gme:Gmet_1279 phosphatase KdsC YP_900657.1 KEGG: gsu:GSU1890 hypothetical protein YP_900658.1 PFAM: OstA family protein; KEGG: gsu:GSU1889 hypothetical protein YP_900659.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU1888 ABC transporter, ATP-binding protein YP_900660.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor, core-binding region; sigma-54, DNA-binding domain protein; KEGG: gsu:GSU1887 RNA polymerase sigma-54 factor YP_900661.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: gsu:GSU1886 ribosomal subunit interface protein YP_900662.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_900663.1 PFAM: Uncharacterized P-loop ATPase protein UPF0042; KEGG: gsu:GSU1884 hypothetical protein YP_900664.1 PFAM: PTS system fructose subfamily IIA component; KEGG: gme:Gmet_1287 PTS system fructose subfamily IIA component YP_900665.1 PFAM: polysaccharide deacetylase; KEGG: gme:Gmet_2850 polysaccharide deacetylase YP_900666.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: gme:Gmet_1288 HPrNtr YP_900667.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: gsu:GSU1881 phosphoenolpyruvate-protein phosphotransferase YP_900668.1 PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: gsu:GSU2043 type 4 prepilin-like proteins leader peptide processing enzyme YP_900669.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: gme:Gmet_0961 two component, sigma54 specific, transcriptional regulator, fis family YP_900670.1 KEGG: pca:Pcar_2069 thiol:disulfide interchange protein DsbC YP_900672.1 KEGG: gsu:GSU2038 hypothetical protein YP_900673.1 KEGG: gsu:GSU2037 hypothetical protein YP_900674.1 KEGG: gsu:GSU2036 hypothetical protein YP_900675.1 KEGG: gsu:GSU2035 hypothetical protein YP_900676.1 KEGG: gsu:GSU2034 hypothetical protein YP_900677.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: gsu:GSU2032 type IV pilus biogenesis protein PilM YP_900678.1 PFAM: Fimbrial assembly family protein; KEGG: gsu:GSU2031 type IV pilus biogenesis protein PilN YP_900679.1 PFAM: Pilus assembly protein, PilO; KEGG: gsu:GSU2030 type IV pilus biogenesis protein PilO YP_900680.1 KEGG: gsu:GSU2029 putative type IV pilus assembly protein PilP YP_900681.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; KEGG: gme:Gmet_0975 type II and III secretion system protein:NolW-like:secretin/TonB, short-like YP_900682.1 PFAM: type IV pilus assembly PilZ; KEGG: gsu:GSU1192 hypothetical protein YP_900683.1 PFAM: protein of unknown function DUF255; KEGG: gme:Gmet_2401 protein of unknown function DUF255 YP_900684.1 KEGG: gsu:GSU0049 hypothetical protein YP_900685.1 KEGG: gsu:GSU1359 helicase, putative YP_900686.1 KEGG: vvy:VVA1544 hypothetical protein YP_900687.1 SMART: HNH nuclease; KEGG: gsu:GSU1364 HNH endonuclease family protein YP_900688.1 PFAM: NERD domain protein; KEGG: dra:DR1757 hypothetical protein YP_900689.1 PFAM: histidine triad (HIT) protein; KEGG: rfr:Rfer_1209 histidine triad (HIT) protein YP_900690.1 SMART: HNH nuclease; KEGG: eba:ebA343 hypothetical protein YP_900692.1 KEGG: gme:Gmet_1436 hypothetical protein YP_900693.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: chy:CHY_1116 ISChy4, transposition helper protein YP_900694.1 PFAM: Integrase, catalytic region; KEGG: sth:STH1130 transposase YP_900695.1 KEGG: gme:Gmet_1436 hypothetical protein YP_900696.1 KEGG: gme:Gmet_1798 hypothetical protein YP_900697.1 KEGG: gsu:GSU2115 hypothetical protein YP_900698.1 PFAM: transposase, IS4 family protein; KEGG: eba:p2A202 transposase YP_900699.1 KEGG: gsu:GSU2116 hypothetical protein YP_900701.1 PFAM: phage integrase family protein; KEGG: pca:Pcar_0420 hypothetical protein YP_900702.1 PFAM: Sporulation domain protein; KEGG: gsu:GSU1811 hypothetical protein YP_900703.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_900704.1 KEGG: gme:Gmet_1433 hypothetical protein YP_900705.1 PFAM: Septum formation initiator; KEGG: gsu:GSU1814 septum formation initiator family protein YP_900706.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: gsu:GSU1816 UDP-glucose 6-dehydrogenase YP_900707.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: gme:Gmet_2861 hypothetical protein YP_900708.1 PFAM: dehydrogenase, E1 component; KEGG: pca:Pcar_0343 acetoin dehydrogenase complex, E1 component, alpha subunit YP_900709.1 PFAM: Transketolase, central region; Transketolase domain protein; KEGG: reu:Reut_B5551 transketolase, central region:transketolase, C-terminal YP_900710.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; KEGG: pca:Pcar_0345 dehydrogenase complex E2 component, dihydrolipamide acetyltransferase YP_900711.1 PFAM: dehydrogenase, E1 component; KEGG: pca:Pcar_0343 acetoin dehydrogenase complex, E1 component, alpha subunit YP_900712.1 PFAM: Transketolase, central region; Transketolase domain protein; KEGG: reu:Reut_B5551 transketolase, central region:transketolase, C-terminal YP_900713.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_900714.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: pca:Pcar_0347 2-oxoglutarate dehydrogenase complex, E3 component, lipoamide dehydrogenase YP_900715.1 TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: gme:Gmet_2747 lipoate-protein ligase B YP_900718.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_900719.1 KEGG: pca:Pcar_0922 hypothetical protein YP_900720.1 PFAM: alpha/beta hydrolase fold; KEGG: sru:SRU_0946 hydrolase, alpha/beta fold family, putative YP_900721.1 PFAM: ATP-NAD/AcoX kinase; KEGG: pca:Pcar_0341 acetoin catabolism protein X YP_900722.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: pca:Pcar_0336 putative transcriptional regulator, fis family YP_900723.1 KEGG: pca:Pcar_0332 hypothetical protein YP_900724.1 KEGG: pca:Pcar_0333 hypothetical protein YP_900725.1 KEGG: dde:Dde_1615 membrane protein, putative YP_900726.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pca:Pcar_0330 2,3-butanediol dehydrogenase YP_900727.1 KEGG: pca:Pcar_0920 hypothetical protein YP_900729.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_900730.1 PFAM: metallophosphoesterase; KEGG: csa:Csal_1928 metallophosphoesterase YP_900732.1 KEGG: chy:CHY_1281 conserved hypothetical protein TIGR00268 YP_900733.1 KEGG: mbu:Mbur_2077 hypothetical protein YP_900734.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: dar:Daro_1967 UDP-glucose/GDP-mannose dehydrogenase YP_900735.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: gsu:GSU1545 transporter, LysE family YP_900736.1 KEGG: sde:Sde_3713 lipoprotein, putative YP_900737.1 PFAM: helix-turn-helix, HxlR type; KEGG: sat:SYN_00717 transcriptional regulator YP_900738.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: gme:Gmet_1510 4-oxalocrotonate tautomerase YP_900739.1 PFAM: protein of unknown function DUF1375 YP_900740.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_900741.1 KEGG: gme:Gmet_1928 rubrerythrin YP_900743.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: ade:Adeh_1284 type II secretion system protein E YP_900744.1 PFAM: thioesterase superfamily protein; KEGG: pca:Pcar_1366 acyl-CoA hydrolase-like YP_900745.1 PFAM: cell wall hydrolase/autolysin; KEGG: gsu:GSU1821 N-acetylmuramoyl-L-alanine amidase, family 3 YP_900746.1 KEGG: pca:Pcar_1762 hypothetical protein YP_900747.1 This protein performs the mismatch recognition step during the DNA repair process YP_900748.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gme:Gmet_0721 hypothetical protein YP_900749.1 KEGG: gme:Gmet_2605 hypothetical protein YP_900750.1 PFAM: protein of unknown function DUF255; KEGG: gme:Gmet_2401 protein of unknown function DUF255 YP_900751.1 KEGG: gsu:GSU1872 hypothetical protein YP_900752.1 PFAM: Appr-1-p processing domain protein; KEGG: gsu:GSU2376 hypothetical protein YP_900753.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: vpa:VP0926 hypothetical protein YP_900754.1 PFAM: thiamine biosynthesis protein; KEGG: gsu:GSU0434 hypothetical protein YP_900755.1 PFAM: protein of unknown function DUF1555 YP_900756.1 PFAM: conserved hypothetical protein 245; KEGG: pca:Pcar_2007 hypothetical protein YP_900757.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pca:Pcar_2008 glutamine transport system ATP-binding protein YP_900758.1 PFAM: thioesterase superfamily protein; KEGG: cte:CT2140 hypothetical protein YP_900759.1 PFAM: regulatory protein, MarR; KEGG: gsu:GSU2362 transcriptional regulator, MarR family YP_900761.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gme:Gmet_3216 TPR repeat protein YP_900762.1 TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; KEGG: mbu:Mbur_0274 protein of unknown function DUF160 YP_900763.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pca:Pcar_1402 L-lysine 2,3-aminomutase, putative/acetyltransferase, GNAT family YP_900764.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: gme:Gmet_0807 4Fe-4S ferredoxin, iron-sulfur binding protein YP_900766.1 PFAM: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; KEGG: gsu:GSU0807 apo-citrate lyase phosphoribosyl-dephospho-CoA transferase, putative YP_900767.1 KEGG: ctc:CTC02559 citrate lyase alpha chain; TIGRFAM: citrate lyase, alpha subunit; PFAM: Citrate lyase, alpha subunit YP_900768.1 PFAM: HpcH/HpaI aldolase; KEGG: cpe:CPE1148 citrate lyase beta subunit YP_900769.1 PFAM: protein of unknown function DUF296; KEGG: afu:AF0104 hypothetical protein YP_900770.1 acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate YP_900771.1 KEGG: ctc:CTC02557 citrate (pro-3S)-lyase ligase; TIGRFAM: cytidyltransferase-related domain; citrate lyase ligase; PFAM: Citrate lyase ligase, C-terminal domain protein YP_900772.1 KEGG: dvu:DVU0997 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase YP_900773.1 PFAM: aminodeoxychorismate lyase; KEGG: gsu:GSU0508 conserved hypothetical protein TIGR00247 YP_900774.1 PFAM: metallophosphoesterase; KEGG: sat:SYN_00534 phosphoesterase YP_900775.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_900776.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_900777.1 KEGG: gme:Gmet_2867 hypothetical protein YP_900778.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_900779.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: PRC-barrel domain protein; KEGG: gme:Gmet_2869 16S rRNA processing protein RimM YP_900780.1 PFAM: KH, type 1, domain protein; KEGG: gme:Gmet_2870 KH, type 1 YP_900781.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_900782.1 KEGG: gme:Gmet_2872 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase YP_900783.1 KEGG: gme:Gmet_2873 hypothetical protein YP_900784.1 KEGG: gme:Gmet_2874 hypothetical protein YP_900785.1 KEGG: gsu:GSU0638 hypothetical protein YP_900787.1 KEGG: gsu:GSU0568 hypothetical protein YP_900788.1 PFAM: NADPH-dependent FMN reductase; KEGG: gme:Gmet_1442 NADPH-dependent FMN reductase YP_900789.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: ppu:PP0920 xenobiotic reductase B YP_900790.1 PFAM: transposase, IS4 family protein; KEGG: eba:p2A202 transposase YP_900791.1 PFAM: transposase, IS4 family protein; KEGG: eba:p2A202 transposase YP_900792.1 PFAM: helix-turn-helix, HxlR type; KEGG: pca:Pcar_1088 hypothetical protein YP_900793.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: gme:Gmet_0804 alcohol dehydrogenase superfamily, zinc-containing YP_900795.1 KEGG: sat:SYN_03526 hypothetical cytosolic protein YP_900796.1 PFAM: helix-turn-helix domain protein; KEGG: sat:SYN_01508 transcriptional regulator helix turn helix YP_900797.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: eca:ECA2758 hypothetical protein YP_900798.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: aba:Acid345_3557 transcriptional regulator, CopG family YP_900799.1 SMART: helix-turn-helix domain protein YP_900800.1 PFAM: BRO domain protein domain protein; KEGG: xft:PD1001 hypothetical protein YP_900802.1 TIGRFAM: DNA binding domain, excisionase family YP_900803.1 PFAM: zinc finger, CHC2-family protein; KEGG: deh:cbdb_A1485 hypothetical protein YP_900804.1 PFAM: HMG-I and HMG-Y, DNA-binding domain protein; KEGG: nwi:Nwi_1258 hypothetical protein YP_900805.1 KEGG: cte:CT1121 hypothetical protein YP_900807.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: neu:NE0751 site-specific recombinase YP_900808.1 PFAM: phage integrase family protein; KEGG: lpp:lpp2123 hypothetical protein YP_900809.1 KEGG: cch:Cag_1453 TPR repeat YP_900810.1 PFAM: transposase, IS4 family protein; KEGG: eba:p2A202 transposase YP_900811.1 PFAM: peptidase C14, caspase catalytic subunit p20; KEGG: sma:SAV4433 hypothetical protein YP_900812.1 KEGG: sma:SAV4434 hypothetical protein YP_900815.1 KEGG: pca:Pcar_2347 desulfoferrodoxin; TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin, ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein YP_900816.1 PFAM: Citrate synthase; KEGG: sth:STH2542 citrate synthase YP_900817.1 PFAM: peptidase M24; KEGG: gsu:GSU1105 xaa-pro dipeptidase YP_900818.1 KEGG: tfu:Tfu_2818 hypothetical protein YP_900819.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: rba:RB3959 hypothetical protein YP_900820.1 KEGG: gme:Gmet_1243 histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_900821.1 KEGG: gme:Gmet_1243 histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein YP_900822.1 KEGG: dvu:DVUA0088 hypothetical protein YP_900823.1 KEGG: dvu:DVUA0088 hypothetical protein YP_900824.1 TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: gme:Gmet_1427 tyrosine recombinase XerD YP_900826.1 PFAM: beta-lactamase domain protein; KEGG: gsu:GSU1631 metallo-beta-lactamase family protein YP_900827.1 TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: bms:BR0849 adenylosuccinate lyase YP_900828.1 PFAM: MscS Mechanosensitive ion channel; KEGG: gme:Gmet_1942 MscS mechanosensitive ion channel YP_900829.1 KEGG: gme:Gmet_1941 phosphoribosylformylglycinamidine synthase II; TIGRFAM: phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_900830.1 PFAM: DNA polymerase, beta domain protein region; KEGG: mma:MM1163 nucleotidyltransferase YP_900831.1 PFAM: protein of unknown function UPF0150; KEGG: mba:Mbar_A2122 hypothetical protein YP_900832.1 KEGG: gsu:GSU0898 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_900833.1 KEGG: gme:Gmet_1940 phosphoribosylformylglycinamidine synthase I, putative YP_900834.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase, class-II; phosphoribosyltransferase; KEGG: gsu:GSU1636 amidophosphoribosyltransferase YP_900835.1 KEGG: gme:Gmet_1938 orotate phosphoribosyl transferase; TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_900836.1 TIGRFAM: hemolysin A; PFAM: histidine triad (HIT) protein; ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: gme:Gmet_1222 hemolysin A YP_900837.1 KEGG: gsu:GSU1424 hypothetical protein YP_900838.1 PFAM: natural resistance-associated macrophage protein; KEGG: sat:SYN_01528 nramp family metal ion transport protein YP_900839.1 PFAM: CBS domain containing protein; MgtE intracellular region; KEGG: sat:SYN_01529 Mg/Co/Ni transporter MgtE domain protein YP_900840.1 PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: gme:Gmet_2474 organic solvent tolerance protein, putative YP_900841.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: gme:Gmet_2475 folylpolyglutamate synthetase YP_900842.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: gme:Gmet_2476 acetyl-CoA carboxylase carboxyl transferase, beta subunit YP_900843.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_900844.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: gsu:GSU2372 methyl-accepting chemotaxis protein, putative YP_900845.1 SMART: Water Stress and Hypersensitive response; KEGG: gsu:GSU2373 lipoprotein, putative YP_900846.1 KEGG: gme:Gmet_2481 hypothetical protein YP_900847.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: gme:Gmet_1929 cytochrome bd ubiquinol oxidase, subunit II YP_900848.1 PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: gme:Gmet_1930 cytochrome bd ubiquinol oxidase, subunit I YP_900849.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: gme:Gmet_1931 transcriptional regulator, BadM/Rrf2 family YP_900850.1 PFAM: Peptidoglycan-binding LysM; KEGG: neu:NE2076 LysM motif YP_900851.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: aba:Acid345_3014 multi-sensor hybrid histidine kinase YP_900852.1 KEGG: gme:Gmet_1386 3'-5' exoribonuclease, VacB and RNase II:ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain; SMART: Cold shock protein YP_900853.1 PFAM: peptidase M23B; KEGG: gme:Gmet_1681 peptidase M23B YP_900855.1 KEGG: gsu:GSU1584 biotin synthetase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB YP_900856.1 TIGRFAM: dethiobiotin synthase; KEGG: gsu:GSU1583 dethiobiotin synthase YP_900857.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: cte:CT0047 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_900859.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: gme:Gmet_0812 two component, sigma54 specific, transcriptional regulator, fis family YP_900860.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: gme:Gmet_2669 phenylacetic acid degradation-related protein YP_900861.1 PFAM: histone family protein DNA-binding protein; KEGG: pca:Pcar_1686 DNA-binding protein HU YP_900862.1 binds and unfolds substrates as part of the ClpXP protease YP_900863.1 KEGG: gme:Gmet_1873 peptidase S14, ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14, ClpP YP_900864.1 TIGRFAM: trigger factor; PFAM: peptidylprolyl isomerase, FKBP-type; trigger factor, C-terminal domain protein; trigger factor, N-terminal domain; KEGG: gsu:GSU1793 trigger factor YP_900865.1 PFAM: translation initiation factor SUI1; KEGG: gsu:GSU0691 translation initation factor SUI1, putative YP_900866.1 PFAM: protein of unknown function UPF0102; KEGG: gsu:GSU0650 predicted endonuclease YP_900867.1 KEGG: gme:Gmet_2290 HAD-superfamily hydrolase subfamily IA; TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_900868.1 PFAM: protein of unknown function UPF0044; KEGG: gsu:GSU1263 putative RNA-binding protein containing KH domain YP_900869.1 KEGG: gme:Gmet_2820 terpene synthase:squalene cyclase; TIGRFAM: squalene/oxidosqualene cyclases; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase YP_900870.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KEGG: gsu:GSU0687 dihydroflavonol 4-reductase, putative YP_900871.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_900872.1 PFAM: Radical SAM domain protein; KEGG: gsu:GSU0685 radical SAM domain protein YP_900875.1 PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: gsu:GSU0267 transcriptional regulator, GntR family YP_900876.1 PFAM: protein of unknown function DUF81; KEGG: gsu:GSU0268 membrane protein, putative YP_900877.1 PFAM: protein of unknown function DUF1634; KEGG: gsu:GSU0269 hypothetical protein YP_900878.1 KEGG: gme:Gmet_0295 cytochrome c nitrite reductase, small subunit NrfH, putative YP_900879.1 PFAM: cytochrome c552; KEGG: gme:Gmet_0294 cytochrome c552 YP_900880.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_900881.1 KEGG: gsu:GSU3152 sensory box protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_900882.1 PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: dps:DP2119 anaerobic nitric oxide reductase flavorubredoxin YP_900884.1 KEGG: pfl:PFL_2070 hypothetical protein YP_900885.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF542, ScdA domain protein; Hemerythrin HHE cation binding domain protein; KEGG: gme:Gmet_3494 hemerythrin HHE cation binding region YP_900886.1 PFAM: HPP family protein+B94; KEGG: gme:Gmet_0299 HPP YP_900887.1 PFAM: extracellular solute-binding protein, family 1; KEGG: pca:Pcar_0492 spermidine/putrescine-binding periplasmic protein-like YP_900888.1 KEGG: sat:SYN_01621 hypothetical protein YP_900889.1 PFAM: Ethanolamine ammonia lyase large subunit; KEGG: pca:Pcar_0491 ethanolamine ammonia-lyase large subunit-like YP_900890.1 KEGG: pca:Pcar_0466 hypothetical protein YP_900891.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pca:Pcar_0465 membrane-bound iron(III) dicitrate transport protein YP_900892.1 PFAM: periplasmic binding protein; KEGG: pca:Pcar_0464 ABC-type Fe3+-hydroxamate transport system periplasmic component-like YP_900893.1 PFAM: transport system permease protein; KEGG: pca:Pcar_0463 putative ferrichrome ABC transporter permease protein YP_900894.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: pca:Pcar_0462 putative Mg chelatase YP_900895.1 PFAM: protein of unknown function DUF58; KEGG: pca:Pcar_0461 hypothetical protein YP_900896.1 KEGG: pca:Pcar_0460 hypothetical protein YP_900897.1 KEGG: pca:Pcar_0459 hypothetical protein YP_900898.1 KEGG: pca:Pcar_0458 hypothetical protein YP_900899.1 PFAM: von Willebrand factor, type A; KEGG: pca:Pcar_0457 hypothetical protein YP_900900.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: gsu:GSU2579 methyl-accepting chemotaxis protein YP_900902.1 KEGG: dar:Daro_1694 cobalt transport protein ATP-binding subunit; TIGRFAM: cobalt ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_900903.1 TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: dar:Daro_1695 cobalt transport protein YP_900904.1 periplasmic cobalt binding component of the cobalt transport system YP_900905.1 catalyzes the ATP-dependent transport of cobalt YP_900907.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pca:Pcar_2397 outer membrane receptor for ferrienterochelin and colicins-like YP_900908.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pca:Pcar_0579 carbon-nitrogen hydrolase family protein YP_900909.1 PFAM: protein of unknown function DUF105; KEGG: mja:MJ1613 hypothetical protein YP_900910.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cte:CT0935 TonB-dependent receptor-related protein YP_900911.1 PFAM: CobN/magnesium chelatase; KEGG: mba:Mbar_A3731 cobalamin biosynthesis protein N YP_900912.1 KEGG: mbu:Mbur_2259 hypothetical protein YP_900913.1 KEGG: mmp:MMP0491 MotA/TolQ/ExbB proton channel YP_900914.1 KEGG: mac:MA4427 hypothetical protein YP_900915.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: cya:CYA_2030 TonB family protein YP_900916.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: dar:Daro_4029 TonB-dependent receptor YP_900917.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: gme:Gmet_3538 biopolymer transport protein ExbD/TolR YP_900918.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: gsu:GSU0028 TolQ protein YP_900919.1 periplasmic cobalt binding component of the cobalt transport system YP_900920.1 catalyzes the ATP-dependent transport of cobalt YP_900921.1 KEGG: cte:CT1745 hypothetical protein YP_900922.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: gme:Gmet_2441 cobalamin (vitamin B12) biosynthesis CbiM protein YP_900923.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: cya:CYA_2030 TonB family protein YP_900924.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: hch:HCH_03573 outer membrane receptor protein, mostly Fe transport YP_900925.1 KEGG: dps:DP0156 hypothetical protein YP_900926.1 KEGG: ade:Adeh_0496 hypothetical protein YP_900927.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: sat:SYN_01053 TolQ protein YP_900928.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sat:SYN_01052 TolR protein YP_900929.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pca:Pcar_0851 precorrin-4 methylase-like YP_900930.1 KEGG: hit:NTHI1707 predicted ABC-type transport system protein, periplasmic component YP_900931.1 PFAM: amino acid permease-associated region; KEGG: sru:SRU_2312 amino acid permease family protein YP_900932.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pca:Pcar_0454 TonB-dependent receptor, putative YP_900933.1 PFAM: cytochrome c assembly protein; KEGG: pmm:PMM0765 possible heme transporter YP_900934.1 KEGG: pca:Pcar_0193 hypothetical protein YP_900935.1 KEGG: ctc:CTC01372 ferrichrome-binding periplasmic protein YP_900936.1 PFAM: transport system permease protein; KEGG: ctc:CTC01371 iron(III) dicitrate transport system permease protein fecD YP_900937.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ctc:CTC01370 ferric enterobactin transport ATP-binding protein fepC YP_900938.1 PFAM: CobN/magnesium chelatase; KEGG: cte:CT0418 cobalamin biosynthesis protein CobN YP_900939.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: nar:Saro_1186 TonB-dependent receptor YP_900940.1 KEGG: cte:CT0420 magnesium-chelatase, subunit D/I family; PFAM: magnesium chelatase, ChlI subunit; von Willebrand factor, type A; SMART: AAA ATPase YP_900941.1 KEGG: cte:CT0421 magnesium-chelatase, subunit I family; PFAM: magnesium chelatase, ChlI subunit; SMART: AAA ATPase YP_900942.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cyb:CYB_2030 ABC transporter, ATP-binding protein YP_900943.1 PFAM: ABC-2 type transporter; KEGG: cya:CYA_0319 ABC-2 transporter, permease protein YP_900944.1 PFAM: protein of unknown function DUF105; KEGG: cte:CT0414 hypothetical protein YP_900945.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cte:CT0935 TonB-dependent receptor-related protein YP_900946.1 KEGG: cte:CT0422 CobN protein, putative YP_900947.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: gme:Gmet_0476 cobalamin (vitamin B12) biosynthesis CbiX protein YP_900948.1 PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: gsu:GSU2999 precorrin-8X methylmutase YP_900949.1 PFAM: Radical SAM domain protein; KEGG: cte:CT0417 AslB/AtsB family protein YP_900950.1 KEGG: pfo:Pfl_3193 hypothetical protein YP_900951.1 KEGG: mca:MCA0837 hypothetical protein YP_900952.1 KEGG: cch:Cag_0294 hypothetical protein YP_900953.1 KEGG: cch:Cag_0294 hypothetical protein YP_900954.1 KEGG: mca:MCA1892 hypothetical protein YP_900955.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: gme:Gmet_1508 4Fe-4S ferredoxin, iron-sulfur binding protein YP_900956.1 TIGRFAM: putative CoA-substrate-specific enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: tdn:Tmden_0272 CoA enzyme activase YP_900957.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: tdn:Tmden_0273 2-hydroxyglutaryl-CoA dehydratase, D-component YP_900958.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tdn:Tmden_0274 4Fe-4S ferredoxin, iron-sulfur binding YP_900960.1 KEGG: gme:Gmet_1576 ArgK protein; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; SMART: AAA ATPase YP_900961.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: gsu:GSU3303 methylmalonyl-CoA epimerase YP_900962.1 functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins YP_900963.1 MDM; functions in conversion of succinate to propionate YP_900964.1 KEGG: gka:GK2371 methylmalonyl-CoA mutase small subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase YP_900965.1 KEGG: gme:Gmet_1620 HDIG YP_900966.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: gme:Gmet_3075 ExsB YP_900967.1 KEGG: gme:Gmet_1951 hypothetical protein YP_900968.1 KEGG: gsu:GSU2706 phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase YP_900969.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_900970.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis YP_900971.1 catalyzes the formation of L-tryptophan from indole and L-serine YP_900972.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_900973.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: gme:Gmet_1628 NusB antitermination factor YP_900974.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_900975.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein; KEGG: gme:Gmet_0478 cobalamin (vitamin B12) biosynthesis CbiD protein YP_900976.1 PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: gsu:GSU2999 precorrin-8X methylmutase YP_900977.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: gsu:GSU3000 CbiX protein YP_900978.1 PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: cyb:CYB_2140 alpha-2-macroglobulin family protein YP_900979.1 KEGG: dsy:DSY1550 hypothetical protein YP_900980.1 PFAM: VanW family protein; KEGG: cya:CYA_2235 VanW family protein YP_900981.1 PFAM: protein of unknown function DUF1653; KEGG: ilo:IL1584 hypothetical protein YP_900982.1 KEGG: gsu:GSU0030 oxygen-independent coproporphyrinogen III oxidase, putative; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_900984.1 PFAM: peptidase C1A, papain; KEGG: gsu:GSU2675 hypothetical protein YP_900985.1 PFAM: Allergen V5/Tpx-1 family protein; KEGG: pca:Pcar_2061 hypothetical protein YP_900987.1 KEGG: gsu:GSU3335 hypothetical protein YP_900988.1 KEGG: gsu:GSU3336 hypothetical protein YP_900989.1 PFAM: Lytic transglycosylase, catalytic; KEGG: gme:Gmet_1377 lytic transglycosylase, catalytic YP_900990.1 KEGG: dar:Daro_1088 hypothetical protein YP_900992.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_900993.1 PFAM: phage integrase family protein; KEGG: sat:SYN_01916 DNA integration/recombination/inversion protein YP_900994.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: dde:Dde_2493 DEAD/DEAH box helicase-like YP_900995.1 PFAM: zinc finger, SWIM domain protein; KEGG: pca:Pcar_0899 hypothetical protein YP_900997.1 PFAM: Integrase, catalytic region; KEGG: sth:STH1130 transposase YP_900998.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: chy:CHY_1116 ISChy4, transposition helper protein YP_900999.1 KEGG: bxe:Bxe_C0709 putative ATPase YP_901000.1 PFAM: Integrase, catalytic region; KEGG: rme:Rmet_6335 integrase, catalytic region YP_901001.1 KEGG: bxe:Bxe_C0711 hypothetical protein YP_901002.1 KEGG: pca:Pcar_0899 hypothetical protein YP_901003.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: sty:HCM1.168 resolvase YP_901004.1 KEGG: rpb:RPB_0918 hypothetical protein YP_901006.1 KEGG: pha:PSHAb0094 putative orphan protein YP_901007.1 KEGG: bxe:Bxe_C0711 hypothetical protein YP_901008.1 PFAM: Integrase, catalytic region; KEGG: rme:Rmet_6335 integrase, catalytic region YP_901009.1 KEGG: bxe:Bxe_C0709 putative ATPase YP_901011.1 KEGG: vpa:VP0643 hypothetical protein YP_901012.1 PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: gsu:GSU0797 putative multiple antibiotic resistance protein YP_901013.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_901014.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate YP_901015.1 PFAM: Na+/solute symporter; KEGG: dsy:DSY3880 hypothetical protein YP_901016.1 KEGG: cch:Cag_0890 methylated-DNA-(protein)-cysteine S-methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase YP_901017.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: sat:SYN_00035 permease of the DMT superfamily YP_901019.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: cvi:CV3504 probable two-component response regulator YP_901020.1 KEGG: dar:Daro_3006 PAS; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_901021.1 KEGG: gsu:GSU1820 protein-P-II uridylyltransferase, putative; TIGRFAM: protein-P-II uridylyltransferase; PFAM: amino acid-binding ACT domain protein; DNA polymerase, beta domain protein region; metal-dependent phosphohydrolase, HD sub domain; GlnD PII-uridylyltransferase; SMART: metal-dependent phosphohydrolase, HD region YP_901022.1 PFAM: protein of unknown function UPF0047; KEGG: gsu:GSU2631 conserved hypothetical protein TIGR00149 YP_901023.1 TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: gme:Gmet_0862 chorismate mutase, gamma, beta and epsilon YP_901024.1 PFAM: Prephenate dehydrogenase; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: gme:Gmet_0863 prephenate dehydrogenase:NAD-dependent glycerol-3-phosphate dehydrogenase-like YP_901025.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_901026.1 KEGG: gme:Gmet_0865 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region YP_901027.1 KEGG: gme:Gmet_0866 LytB protein; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein YP_901028.1 TIGRFAM: ribosomal protein S1; PFAM: RNA binding S1 domain protein; KEGG: gsu:GSU2603 ribosomal protein S1 YP_901029.1 PFAM: histone family protein DNA-binding protein; KEGG: gme:Gmet_0868 histone-like DNA-binding protein YP_901030.1 PFAM: Radical SAM domain protein; KEGG: gsu:GSU1446 radical SAM domain protein YP_901031.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sme:SMc00739 hypothetical protein YP_901032.1 KEGG: sme:SMc00740 hypothetical protein YP_901033.1 PFAM: protein of unknown function DUF1568; KEGG: gsu:GSU2771 hypothetical protein YP_901034.1 PFAM: Radical SAM domain protein; KEGG: gsu:GSU1446 radical SAM domain protein YP_901035.1 PFAM: TonB-dependent receptor, plug; KEGG: gme:Gmet_1245 TonB-dependent receptor, plug YP_901036.1 KEGG: gme:Gmet_2736 hypothetical protein YP_901039.1 PFAM: RDD domain containing protein; KEGG: tcx:Tcr_1706 RDD YP_901042.1 TIGRFAM: phage and plasmid primase, P4 family; PFAM: Poxvirus D5 protein; KEGG: rso:RSc3229 putative bacteriophage-related protein YP_901045.1 PFAM: phage integrase family protein; KEGG: gsu:GSU0064 integrative genetic element Gsu32, integrase YP_901046.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_901047.1 KEGG: nmu:Nmul_A2261 hypothetical protein YP_901048.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: gme:Gmet_3035 ATP-dependent RNA helicase RhlB YP_901049.1 molecular chaperone YP_901050.1 PFAM: Alkaline phosphatase; KEGG: bld:BLi02565 alkaline phosphatase III; RBL01661 YP_901051.1 PFAM: protein of unknown function UPF0153; KEGG: gme:Gmet_0877 hypothetical protein YP_901052.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; HDOD; SMART: metal-dependent phosphohydrolase, HD region; KEGG: gsu:GSU1654 response regulator, putative YP_901053.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: gsu:GSU1657 DNA internalization-related competence protein ComEC/Rec2 YP_901054.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: gme:Gmet_1914 diguanylate cyclase (GGDEF domain) YP_901055.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_901056.1 TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; Oligopeptidase F; KEGG: gsu:GSU1873 oligoendopeptidase F YP_901057.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rso:RS01896 probable tonb-dependent receptor signal peptide protein YP_901058.1 PFAM: protein of unknown function DUF81; KEGG: dvu:DVU2783 hypothetical protein YP_901059.1 PFAM: peptidase M20; peptidase M42 family protein; KEGG: gme:Gmet_2294 peptidase M42 YP_901060.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: dps:DP0553 hypothetical protein YP_901061.1 KEGG: pca:Pcar_1175 catalase/peroxidase; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase YP_901062.1 KEGG: bte:BTH_I2942 hypothetical protein YP_901063.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: dar:Daro_0025 peptidase C56, PfpI YP_901064.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis YP_901065.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: gsu:GSU1374 methyl-accepting chemotaxis protein YP_901067.1 KEGG: gsu:GSU2778 hypothetical protein YP_901068.1 PFAM: regulatory protein, MerR; KEGG: gsu:GSU2779 transcriptional regulator, MerR family YP_901069.1 KEGG: gsu:GSU0231 hypothetical protein YP_901070.1 KEGG: pca:Pcar_0290 signal transduction histidine kinase regulating C4-dicarboxylate transport system-like; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein YP_901072.1 KEGG: ccr:CC1229 epoxide hydrolase YP_901073.1 PFAM: helix-turn-helix domain protein YP_901074.1 PFAM: protein of unknown function DUF1456; KEGG: son:SO3852 hypothetical protein YP_901075.1 KEGG: gsu:GSU2927 cytochrome c, putative YP_901076.1 KEGG: gsu:GSU2924 hypothetical protein YP_901077.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_901078.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_901079.1 PFAM: GrpE protein; KEGG: gsu:GSU0032 GrpE protein YP_901080.1 TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: gme:Gmet_3534 negative regulator of class I heat shock protein YP_901081.1 PFAM: type IV pilus assembly PilZ YP_901082.1 PFAM: GAF domain protein; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: pca:Pcar_2329 metal dependent phosphohydrolase YP_901083.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ssp:SSP0078 hypothetical protein YP_901084.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: dde:Dde_0339 outer membrane protein, OMPP1/FadL/TodX family YP_901085.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_901086.1 KEGG: gsu:GSU2922 hypothetical protein YP_901087.1 PFAM: dihydropteroate synthase, DHPS; homocysteine S-methyltransferase; Methionine synthase, B12-binding module, cap domain protein; cobalamin B12-binding domain protein; KEGG: gme:Gmet_0549 homocysteine S-methyltransferase YP_901088.1 KEGG: gme:Gmet_0550 hypothetical protein YP_901089.1 KEGG: gsu:GSU2917 hypothetical protein YP_901090.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: gme:Gmet_0815 PpiC-type peptidyl-prolyl cis-trans isomerase YP_901091.1 PFAM: methyltransferase small; KEGG: gsu:GSU0637 hypothetical protein YP_901092.1 KEGG: gsu:GSU0636 hypothetical protein YP_901093.1 KEGG: gsu:GSU0634 glycosyl transferase, group 1 family protein YP_901094.1 PFAM: glycosyl transferase, family 2; KEGG: lic:LIC12128 glycosyl transferase YP_901095.1 PFAM: glycosyl transferase, group 1; KEGG: dvu:DVU0093 conserved domain protein/glycosyl transferase, group 1 family protein YP_901096.1 PFAM: glycosyl transferase, group 1; KEGG: dde:Dde_2890 glycosyltransferase-like YP_901097.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dde:Dde_2892 hypothetical protein YP_901098.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: ana:all4430 probable polysaccharide biosynthesis protein YP_901099.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: gsu:GSU0627 GDP-fucose synthetase YP_901100.1 KEGG: gme:Gmet_2361 hypothetical protein YP_901102.1 KEGG: gsu:GSU1529 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_901103.1 KEGG: gme:Gmet_2749 hypothetical protein YP_901104.1 PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: mbu:Mbur_0957 uroporphyrinogen decarboxylase (URO-D) YP_901105.1 PFAM: cobalamin B12-binding domain protein; KEGG: gme:Gmet_2751 cobalamin B12-binding protein YP_901106.1 PFAM: protein of unknown function DUF1566; KEGG: dde:Dde_1619 hypothetical protein YP_901107.1 KEGG: dar:Daro_2057 twin-arginine translocation pathway signal YP_901109.1 PFAM: protein of unknown function UPF0153; KEGG: dde:Dde_3774 hypothetical protein YP_901111.1 KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_901112.1 KEGG: pca:Pcar_1012 ABC-type phosphate/phosphonate transport system periplasmic component-like YP_901113.1 KEGG: pca:Pcar_1013 hypothetical protein YP_901114.1 PFAM: outer membrane efflux protein; KEGG: pca:Pcar_1015 outer membrane protein-like YP_901115.1 PFAM: Hpt domain protein; KEGG: cvi:CV1581 probable sensor/response hybrid YP_901116.1 PFAM: nitroreductase; KEGG: hma:pNG7052 nitroreductase family protein YP_901117.1 PFAM: major facilitator superfamily MFS_1; KEGG: sth:STH2208 membrane transport protein YP_901118.1 PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: ppr:PBPRA1939 hypothetical dehydrogenase YP_901119.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: chy:CHY_0691 2Fe-2S iron-sulfur cluster binding domain YP_901120.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: ppr:PBPRA1941 hypothetical xanthine dehydrogenase YP_901121.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; KEGG: sdn:Sden_0538 ATP-binding region, ATPase-like protein YP_901123.1 PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: pca:Pcar_0940 transcriptional regulator, DeoR family YP_901125.1 KEGG: sat:SYN_00837 ABC-type tungstate transport system, solute-binding protein YP_901126.1 PFAM: TOBE domain protein; KEGG: sat:SYN_00268 N-terminal domain of molybdenum-binding protein YP_901127.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: sat:SYN_00267 molybdopterin biosynthesis protein YP_901128.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: sat:SYN_00266 molybdopterin biosynthesis protein YP_901129.1 PFAM: RelA/SpoT domain protein; KEGG: sth:STH1636 putative GTP pyrophosphokinase YP_901130.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gsu:GSU0548 radical SAM domain protein YP_901131.1 KEGG: gme:Gmet_0514 molybdate ABC transporter, ATP-binding protein; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase YP_901132.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cte:CT0451 molybdenum ABC transporter, permease protein YP_901133.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: sat:SYN_00269 ABC-type molybdate transport system, periplasmic component YP_901134.1 PFAM: helix-turn-helix domain protein; KEGG: pca:Pcar_0149 transcriptional regulator, XRE family YP_901135.1 KEGG: plt:Plut_1543 molybdenum-binding protein-like YP_901136.1 PFAM: transport system permease protein; KEGG: pca:Pcar_0154 ABC-type iron (III) transport system YP_901137.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pca:Pcar_0155 ABC-type iron (III) transport system, ATPase component YP_901138.1 PFAM: formylmethanofuran dehydrogenase, subunit E region; KEGG: pca:Pcar_0156 hypothetical protein YP_901139.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: sat:SYN_01053 TolQ protein YP_901140.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sat:SYN_01052 TolR protein YP_901141.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: sat:SYN_01059 TonB protein YP_901142.1 PFAM: UbiE/COQ5 methyltransferase; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: mmp:MMP1179 SAM (and some other nucleotide) binding motif:generic methyltransferase YP_901143.1 PFAM: Radical SAM domain protein; KEGG: pca:Pcar_0158 hypothetical protein YP_901144.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: tdn:Tmden_1547 TonB-dependent receptor, plug YP_901145.1 KEGG: sat:SYN_01061 hypothetical cytosolic protein YP_901146.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sat:SYN_01048 iron(III) dicitrate transport protein YP_901147.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pca:Pcar_0150 hypothetical protein YP_901148.1 PFAM: Radical SAM domain protein; KEGG: mbu:Mbur_0498 Fe-S protein, radical SAM family YP_901150.1 KEGG: pca:Pcar_1975 hypothetical protein YP_901151.1 PFAM: periplasmic binding protein; KEGG: sat:SYN_01056 iron(III) dicitrate-binding protein YP_901152.1 PFAM: putative esterase; KEGG: bur:Bcep18194_A5450 putative esterase YP_901153.1 KEGG: sat:SYN_01051 iron(III) dicitrate-biding protein YP_901154.1 PFAM: transposase, IS4 family protein; KEGG: eba:p2A202 transposase YP_901155.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sat:SYN_01048 iron(III) dicitrate transport protein YP_901156.1 KEGG: pca:Pcar_2399 tungstate ABC transporter permease YP_901157.1 PFAM: protein of unknown function UPF0157; KEGG: lpf:lpl0552 hypothetical protein YP_901158.1 PFAM: Radical SAM domain protein; KEGG: pca:Pcar_2049 hypothetical protein YP_901159.1 KEGG: gsu:GSU0672 hypothetical protein YP_901160.1 KEGG: gsu:GSU0672 hypothetical protein YP_901162.1 PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: tma:TM1424 NADH dehydrogenase I chain E YP_901163.1 PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: chy:CHY_0732 Fe-hydrogenase, beta subunit YP_901164.1 TIGRFAM: hydrogenases, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; iron hydrogenase, small subunit; hydrogenase large subunit domain protein; KEGG: tte:TTE0894 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) YP_901165.1 catalyzes the formation of biotin from dethiobiotin and sulfur YP_901166.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain YP_901167.1 catalyzes the formation of fumarate from aspartate YP_901168.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; KEGG: pca:Pcar_1629 GTP-binding protein YP_901169.1 PFAM: LytTr DNA-binding region; PAS fold-4 domain protein; KEGG: gsu:GSU2099 sensory box protein, putative YP_901172.1 KEGG: gme:Gmet_2961 hypothetical protein YP_901173.1 TIGRFAM: ATP synthase F0, A subunit; PFAM: H+-transporting two-sector ATPase, A subunit; KEGG: gme:Gmet_3359 H+-transporting two-sector ATPase, A subunit YP_901174.1 TIGRFAM: ATP synthase F0, C subunit; PFAM: H+-transporting two-sector ATPase, C subunit; KEGG: gme:Gmet_3360 ATP synthase F0, C subunit YP_901175.1 PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: gsu:GSU0108 ATP synthase F0, B' subunit, putative YP_901176.1 PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: gme:Gmet_3410 H+-transporting two-sector ATPase, B/B' subunit YP_901177.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_901178.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_901179.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the gamma chain is a regulatory subunit YP_901180.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_901181.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex YP_901182.1 KEGG: gsu:GSU0336 hypothetical protein YP_901183.1 KEGG: gsu:GSU0335 hypothetical protein YP_901184.1 PFAM: major facilitator superfamily MFS_1; KEGG: tel:tlr2241 probable multidrug resistance protein YP_901185.1 PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: eba:ebA2062 medium FAD-binding subunit of molybdenum enzyme YP_901186.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: mta:Moth_1961 (2Fe-2S)-binding YP_901187.1 KEGG: xcb:XC_0578 malonyl CoA-ACP transacylase YP_901188.1 PFAM: phosphopantetheine-binding; KEGG: sat:SYN_02364 acyl carrier protein YP_901189.1 KEGG: sth:STH1448 3-oxoacyl-(acyl-carrier-protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_901191.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: gsu:GSU0461 3-oxoacyl-(acyl carrier protein) reductase YP_901192.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: bha:BH0748 xanthine dehydrogenase YP_901193.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase, class I and II; KEGG: reu:Reut_A2574 histidinol-phosphate aminotransferase YP_901195.1 KEGG: cvi:CV4321 hypothetical protein YP_901196.1 PFAM: phosphopantetheine-binding YP_901197.1 TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_2983 benzoate-CoA ligase family YP_901198.1 KEGG: sat:SYN_02357 anti-sigma regulatory factor YP_901199.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sat:SYN_02356 anti-sigma F factor antagonist YP_901200.1 PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: plt:Plut_0857 serine phosphatase YP_901201.1 KEGG: sat:SYN_02358 ABC transporter substrate-binding protein YP_901202.1 TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein, LysR; TOBE domain protein; KEGG: gsu:GSU2964 molybdenum transport regulatory protein ModE YP_901203.1 KEGG: pca:Pcar_2385 hypothetical protein YP_901204.1 PFAM: aspartate/glutamate/uridylate kinase; KEGG: pca:Pcar_2386 hypothetical protein YP_901205.1 KEGG: pca:Pcar_2393 hypothetical protein YP_901206.1 KEGG: pca:Pcar_0224 hypothetical protein YP_901207.1 PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: chy:CHY_2403 putative reductase, iron-sulfur cluster-binding subunit YP_901208.1 PFAM: Nitrate reductase, gamma subunit; KEGG: dsy:DSY4518 hypothetical protein YP_901209.1 PFAM: DsrC family protein; KEGG: chy:CHY_2402 dissimilatory sulfite reductase subunit C YP_901210.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: sat:SYN_01059 TonB protein YP_901211.1 KEGG: pca:Pcar_2394 hypothetical protein YP_901212.1 PFAM: cobalt transport protein; KEGG: pca:Pcar_2395 hypothetical protein YP_901213.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pca:Pcar_2396 ABC transporter, ATP-binding protein, putative YP_901214.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pca:Pcar_2397 outer membrane receptor for ferrienterochelin and colicins-like YP_901215.1 KEGG: sat:SYN_00837 ABC-type tungstate transport system, solute-binding protein YP_901216.1 KEGG: sat:SYN_00836 ABC-type tungstate transport system, solute-binding protein YP_901217.1 PFAM: Phosphoglycerate mutase; KEGG: pca:Pcar_0229 phosphoglycerate mutase family, putative YP_901218.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: pca:Pcar_0228 uncharacterized MobA-related protein-like YP_901219.1 KEGG: gme:Gmet_1800 coenzyme F390 synthetase-like YP_901220.1 KEGG: pca:Pcar_0224 hypothetical protein YP_901221.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pca:Pcar_0223 methylase involved in ubiquinone/menaquinone biosynthesis-like YP_901222.1 KEGG: pca:Pcar_0222 hypothetical protein YP_901223.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: pca:Pcar_0221 Fe-S oxidoreductase YP_901224.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: pca:Pcar_0220 aldehyde oxidoreductase YP_901225.1 PFAM: molybdopterin binding domain; KEGG: dvu:DVU1560 molybdopterin biosynthesis protein, putative YP_901226.1 KEGG: pca:Pcar_0218 hypothetical protein YP_901229.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rme:Rmet_5127 sigma54 specific transcriptional regulator with GAF sensor, fis family YP_901231.1 KEGG: mca:MCA1869 hypothetical protein YP_901232.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: gsu:GSU0694 HAD-superfamily hydrolase, subfamily IA, variant 1 YP_901233.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: gme:Gmet_2977 protein of unknown function DUF6, transmembrane YP_901235.1 PFAM: protein of unknown function DUF1696; KEGG: oih:OB3216 hypothetical protein YP_901236.1 PFAM: UspA domain protein; KEGG: sat:SYN_02484 universal stress protein family YP_901237.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: sat:SYN_02485 calcium-transporting ATPase YP_901238.1 PFAM: DTW domain containing protein; KEGG: cps:CPS_2423 hypothetical protein YP_901239.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gsu:GSU1762 TPR domain protein YP_901241.1 PFAM: transposase, IS4 family protein; KEGG: dsy:DSY3991 hypothetical protein YP_901244.1 PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: gvi:gll2057 indole-3-pyruvate decarboxylase YP_901245.1 KEGG: gsu:GSU0041 LexA repressor; TIGRFAM: LexA repressor; PFAM: peptidase S24, S26A and S26B; LexA DNA-binding domain protein YP_901246.1 KEGG: gsu:GSU0042 hypothetical protein YP_901247.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: gme:Gmet_1441 UMUC-like DNA-repair protein YP_901248.1 KEGG: gme:Gmet_2301 cytochrome c family protein YP_901249.1 KEGG: gme:Gmet_2929 cytochrome b561 YP_901250.1 KEGG: gme:Gmet_2928 cytochrome c family protein YP_901251.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: gme:Gmet_0942 DNA repair protein RecN YP_901252.1 PFAM: ATP-NAD/AcoX kinase; KEGG: gme:Gmet_0941 ATP-NAD/AcoX kinase YP_901253.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_901254.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_901255.1 KEGG: gme:Gmet_2497 anthranilate synthase component I; TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein YP_901256.1 PFAM: response regulator receiver; CheW domain protein; KEGG: gsu:GSU0879 chemotaxis protein CheV YP_901258.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate YP_901259.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: sat:SYN_02522 ADP-ribosylglycohydrolase YP_901260.1 TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; KEGG: gme:Gmet_3155 glycine cleavage system T protein YP_901261.1 KEGG: son:SO4144 cytochrome c, putative YP_901262.1 PFAM: CoA-binding domain protein; KEGG: mma:MM0358 acetyl-CoA synthetase, alpha subunit YP_901263.1 KEGG: sat:SYN_01949 acyl-CoA synthetase YP_901264.1 TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: gme:Gmet_3154 glycine cleavage H-protein YP_901265.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_901266.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_901267.1 PFAM: extracellular solute-binding protein, family 3; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: gme:Gmet_2956 multi-sensor signal transduction histidine kinase YP_901268.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_901269.1 KEGG: gsu:GSU1688 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein YP_901270.1 PFAM: ATP-cone domain protein; KEGG: gsu:GSU1687 ATP cone domain protein YP_901271.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: gsu:GSU1686 cytidine/deoxycytidylate deaminase family protein YP_901272.1 KEGG: gsu:GSU2506 sensory box protein/sigma-54 dependent DNA-binding response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; PAS fold-4 domain protein; PAS fold domain protein; SMART: AAA ATPase YP_901273.1 PFAM: CheW domain protein; KEGG: gme:Gmet_2421 CheW protein YP_901274.1 PFAM: chemotaxis sensory transducer; SMART: histidine kinase, HAMP region domain protein; KEGG: gme:Gmet_2422 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor YP_901275.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: gsu:GSU1414 sensory box histidine kinase/response regulator YP_901276.1 KEGG: gme:Gmet_2432 hypothetical protein YP_901277.1 KEGG: gme:Gmet_2430 methyl-accepting chemotaxis sensory transducer YP_901278.1 KEGG: gme:Gmet_2429 anti-sigma-factor antagonist (STAS) domain protein YP_901279.1 PFAM: response regulator receiver; KEGG: gme:Gmet_2428 response regulator receiver domain protein (CheY-like) YP_901280.1 PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: gme:Gmet_2427 CheA signal transduction histidine kinase YP_901281.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: gsu:GSU1298 methyl-accepting chemotaxis protein YP_901282.1 PFAM: CheW domain protein; KEGG: gme:Gmet_2421 CheW protein YP_901283.1 PFAM: MCP methyltransferase, CheR-type; KEGG: gsu:GSU1143 chemotaxis protein methyltransferase CheR YP_901284.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: gme:Gmet_2418 response regulator receiver (CheY-like) modulated CheB methylesterase YP_901285.1 PFAM: EAL domain protein; HDOD; KEGG: gme:Gmet_2417 diguanylate phosphodiesterase (EAL domain) YP_901286.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_901287.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_901288.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_901289.1 PFAM: MscS Mechanosensitive ion channel; KEGG: gsu:GSU1557 mechanosensitive ion channel family protein YP_901290.1 PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: ctc:CTC00744 cob(I)yrinic acid a,c-diamide adenosyltransferase YP_901291.1 TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: gme:Gmet_3182 poly(A) polymerase, PcnB YP_901293.1 PFAM: band 7 protein; KEGG: aci:ACIAD2967 conserved hypothetical protein; putative membrane protease subunit YP_901294.1 PFAM: protein of unknown function DUF107; KEGG: pca:Pcar_0648 SURF1 domain protein YP_901295.1 KEGG: gme:Gmet_2115 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; protein phosphatase 2C domain protein YP_901296.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; KEGG: bbr:BB3841 probable NADH-ubiquinone oxidoreductase chain 3 YP_901297.1 KEGG: ade:Adeh_2569 NADH-quinone oxidoreductase, B subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit YP_901298.1 TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone), 30 kDa subunit; KEGG: atc:AGR_C_2342 NADH dehydrogenase I chain C YP_901299.1 PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; KEGG: ade:Adeh_2567 NADH dehydrogenase (ubiquinone) YP_901300.1 TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: lpp:lpp2832 NADH dehydrogenase I chain E YP_901301.1 PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: bba:Bd3083 NADH dehydrogenase I, F subunit YP_901302.1 PFAM: ferredoxin; molybdopterin oxidoreductase Fe4S4 region; KEGG: ade:Adeh_2566 ferredoxin YP_901303.1 PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: ade:Adeh_2565 respiratory-chain NADH dehydrogenase, subunit 1 YP_901304.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: ade:Adeh_2564 4Fe-4S ferredoxin, iron-sulfur binding protein YP_901305.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: bte:BTH_I1070 NADH dehydrogenase I, J subunit YP_901306.1 PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: ade:Adeh_4197 NADH-ubiquinone oxidoreductase, chain 4L YP_901307.1 KEGG: bba:Bd3888 NADH dehydrogenase I chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I) YP_901308.1 KEGG: gme:Gmet_3343 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_901309.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: nmu:Nmul_A1104 proton-translocating NADH-quinone oxidoreductase, chain N YP_901310.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction YP_901311.1 PFAM: permease YjgP/YjgQ family protein; KEGG: gme:Gmet_1249 permease YjgP/YjgQ YP_901312.1 PFAM: permease YjgP/YjgQ family protein; KEGG: gme:Gmet_1248 permease YjgP/YjgQ YP_901313.1 KEGG: gsu:GSU1924 IPT/TIG domain protein YP_901314.1 KEGG: mca:MCA1835 hypothetical protein YP_901315.1 KEGG: gme:Gmet_2819 putative rRNA methylase YP_901316.1 catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate YP_901318.1 KEGG: sat:SYN_00344 hypothetical cytosolic protein YP_901320.1 KEGG: xac:XAC2113 hypothetical protein YP_901321.1 PFAM: transposase, IS4 family protein; KEGG: eba:p2A202 transposase YP_901322.1 KEGG: gme:Gmet_0753 hypothetical protein YP_901323.1 PFAM: protein of unknown function DUF208; KEGG: gsu:GSU1081 hypothetical protein YP_901324.1 PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: gme:Gmet_1626 3,4-dihydroxy-2-butanone 4-phosphate synthase:GTP cyclohydrolase II YP_901326.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_901327.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: gme:Gmet_1397 two component, sigma54 specific, transcriptional regulator, fis family YP_901328.1 KEGG: gsu:GSU1496 pilin domain protein YP_901330.1 KEGG: gme:Gmet_1404 hypothetical protein YP_901331.1 KEGG: gsu:GSU1499 hypothetical protein YP_901332.1 KEGG: gsu:GSU1500 hypothetical protein YP_901333.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU1501 ABC transporter, ATP-binding protein YP_901334.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_901335.1 PFAM: PSP1 domain protein; KEGG: gme:Gmet_2320 PSP1 YP_901336.1 TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: gsu:GSU2230 DNA polymerase III, delta prime subunit YP_901337.1 PFAM: thymidylate kinase; KEGG: gme:Gmet_2318 thymidylate kinase YP_901338.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: gme:Gmet_1827 indolepyruvate ferredoxin oxidoreductase, alpha subunit YP_901339.1 Involved in the incorporation of exogenous aryl acids in the biosynthesis of aromatic amino acids: catalysis of the ferredoxin-dependent oxidative decarboxylation of arylpyruvates. YP_901340.1 PFAM: carbonic anhydrase; KEGG: gme:Gmet_0774 carbonic anhydrase YP_901341.1 KEGG: gme:Gmet_1825 phenylacetate-CoA ligase YP_901342.1 PFAM: amino acid-binding ACT domain protein; KEGG: gme:Gmet_1824 amino acid-binding ACT YP_901343.1 PFAM: Extracellular ligand-binding receptor; KEGG: gme:Gmet_1823 extracellular ligand-binding receptor YP_901344.1 PFAM: inner-membrane translocator; KEGG: gme:Gmet_1822 inner-membrane translocator YP_901345.1 PFAM: inner-membrane translocator; KEGG: gme:Gmet_1821 inner-membrane translocator YP_901346.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_1820 ABC transporter-related protein YP_901347.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_1819 ABC transporter-related protein YP_901348.1 KEGG: gsu:GSU1461 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase YP_901349.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: gme:Gmet_1356 RNA methyltransferase TrmH, group 3 YP_901350.1 PFAM: peptidase M23B; KEGG: gsu:GSU1837 peptidase, family M23/M37 domain protein YP_901351.1 PFAM: type IV pilus assembly PilZ; KEGG: gsu:GSU0137 hypothetical protein YP_901352.1 PFAM: nitrogen regulatory protein P-II; KEGG: gme:Gmet_1351 nitrogen regulatory protein P-II (GlnB, GlnK) YP_901353.1 KEGG: gsu:GSU1835 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp YP_901354.1 PFAM: glutamine synthetase, catalytic region; KEGG: dsy:DSY4406 hypothetical protein YP_901355.1 PFAM: Conserved TM helix repeat-containing protein; KEGG: sat:SYN_02631 hypothetical membrane protein YP_901356.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: gsu:GSU0235 S1 RNA binding domain protein YP_901357.1 PFAM: peptidase M50; KEGG: gme:Gmet_1961 peptidase M50 YP_901358.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_901359.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: gme:Gmet_1959 chromosome segregation and condensation protein ScpA YP_901360.1 TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: gsu:GSU2794 large conductance mechanosensitive channel protein YP_901361.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: gme:Gmet_1958 putative transcriptional regulator YP_901362.1 PFAM: protein of unknown function DUF52; KEGG: gme:Gmet_1957 protein of unknown function DUF52 YP_901363.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_901364.1 KEGG: gme:Gmet_1946 glyceraldehyde-3-phosphate dehydrogenase, type I YP_901365.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_901366.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_901367.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: gsu:GSU1627 preprotein translocase, SecG subunit YP_901368.1 PFAM: Ferritin, Dps family protein; KEGG: gsu:GSU1307 ferritin YP_901369.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_901370.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_901371.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pca:Pcar_1452 RNA methyltransferase, TrmH family, group 2, putative YP_901372.1 PFAM: tRNA pseudouridine synthase D, TruD; KEGG: gme:Gmet_3033 tRNA pseudouridine synthase D, TruD YP_901373.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; amidohydrolase 2; Radical SAM domain protein; KEGG: gme:Gmet_2464 TatD-related deoxyribonuclease:radical SAM YP_901375.1 PFAM: protein of unknown function DUF503; KEGG: gme:Gmet_2411 protein of unknown function DUF503 YP_901376.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_901377.1 TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: mta:Moth_1625 selenide, water dikinase YP_901378.1 KEGG: dps:DP0968 hypothetical protein YP_901381.1 KEGG: gme:Gmet_1474 hypothetical protein YP_901383.1 PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: aba:Acid345_4115 Glu/Leu/Phe/Val dehydrogenase YP_901384.1 KEGG: ftu:FTT1368c glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_901385.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: gme:Gmet_0730 succinyl-CoA ligase, alpha subunit YP_901386.1 catalyzes the interconversion of succinyl-CoA and succinate YP_901387.1 PFAM: peptidase M22, glycoprotease; KEGG: gme:Gmet_1258 peptidase M22, glycoprotease YP_901388.1 PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: gme:Gmet_0030 putative serine protein kinase, PrkA YP_901389.1 KEGG: gsu:GSU3342 hypothetical protein YP_901390.1 KEGG: gsu:GSU3343 SpoVR-like family protein YP_901391.1 SMART: PrkA AAA domain protein; KEGG: gsu:GSU3344 hypothetical protein YP_901392.1 KEGG: gme:Gmet_2402 hypothetical protein YP_901393.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: gme:Gmet_1630 haloacid dehalogenase-like hydrolase YP_901394.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_901395.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_901396.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_901397.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_901398.1 KEGG: gsu:GSU2224 response regulator YP_901399.1 PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: gsu:GSU2222 chemotaxis protein CheA YP_901400.1 PFAM: CheW domain protein; KEGG: gme:Gmet_2309 CheW protein YP_901401.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_901402.1 KEGG: gsu:GSU2208 lipoprotein, putative YP_901403.1 TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; KEGG: gme:Gmet_2298 DNA polymerase III, delta subunit YP_901404.1 KEGG: gme:Gmet_1956 hypothetical protein YP_901405.1 PFAM: Chorismate mutase; KEGG: gme:Gmet_1955 chorismate mutase YP_901406.1 KEGG: gsu:GSU1827 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_901407.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: pca:Pcar_0359 putative ATPase with chaperone activity, two ATP-binding domains YP_901408.1 amylomaltase; acts to release glucose from maltodextrins YP_901409.1 PFAM: protein of unknown function DUF177; KEGG: gsu:GSU1598 hypothetical protein YP_901410.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_901411.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_901413.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: gsu:GSU1602 malonyl CoA-acyl carrier protein transacylase YP_901414.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pca:Pcar_1438 3-oxoacyl-(acyl-carrier-protein) reductase YP_901415.1 TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: gme:Gmet_1602 acyl carrier protein (ACP) YP_901416.1 PFAM: beta-ketoacyl synthase; KEGG: gsu:GSU1605 3-oxoacyl-(acyl-carrier-protein) synthase II YP_901417.1 TIGRFAM: sugar-phosphate isomerases, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; KEGG: gme:Gmet_1604 ribose 5-phosphate isomerase B YP_901418.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_901419.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: gsu:GSU1839 hydrolase, haloacid dehalogenase-like family YP_901420.1 KEGG: gme:Gmet_1347 phosphoesterase, PA-phosphatase related YP_901421.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_901422.1 KEGG: gme:Gmet_0131 hypothetical protein YP_901423.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_901424.1 KEGG: gme:Gmet_1818 phenylacetate-CoA ligase YP_901426.1 PFAM: replication initiation factor; KEGG: sak:SAK_1945 replication initiation factor family protein YP_901429.1 KEGG: rsp:RSP_1938 conserved hypotetical protein YP_901432.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_901433.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_901434.1 PFAM: tRNA synthetase, class II (D, K and N); KEGG: gsu:GSU1753 lysyl-tRNA synthetase-related protein YP_901435.1 TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; KEGG: gsu:GSU1754 L-lysine 2,3-aminomutase YP_901436.1 PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: gme:Gmet_2466 peptidoglycan-binding domain 1 YP_901437.1 KEGG: gme:Gmet_2467 hypothetical protein YP_901438.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: gsu:GSU1825 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_901439.1 PFAM: Lytic transglycosylase, catalytic; KEGG: gsu:GSU1826 lytic murein transglycosylase, putative YP_901440.1 PFAM: transposase, IS4 family protein; KEGG: bha:BH0691 transposase (15) YP_901441.1 KEGG: gme:Gmet_1953 lytic transglycosylase, catalytic YP_901442.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_901443.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: gsu:GSU1759 phosphoribosylglycinamide formyltransferase YP_901444.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_901445.1 KEGG: gsu:GSU1652 hypothetical protein YP_901446.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate YP_901447.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gme:Gmet_2316 radical SAM YP_901448.1 PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: gme:Gmet_2317 ribonuclease III:double-stranded RNA binding YP_901449.1 PFAM: Ppx/GppA phosphatase; KEGG: gme:Gmet_1828 Ppx/GppA phosphatase YP_901450.1 PFAM: Na+/Pi-cotransporter; KEGG: gsu:GSU1742 Na/Pi-cotransporter family protein YP_901451.1 PFAM: histone family protein DNA-binding protein; KEGG: gme:Gmet_1833 histone-like DNA-binding protein YP_901452.1 KEGG: gme:Gmet_1834 hypothetical protein YP_901453.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: gsu:GSU1748 RNA methyltransferase, TrmA family YP_901454.1 PFAM: Creatininase; KEGG: gme:Gmet_1659 creatininase YP_901455.1 PFAM: Radical SAM domain protein; KEGG: gme:Gmet_1658 radical SAM YP_901456.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: gme:Gmet_1657 6-pyruvoyl tetrahydropterin synthase and hypothetical protein YP_901457.1 KEGG: gme:Gmet_2390 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_901458.1 KEGG: gsu:GSU1597 hypothetical protein YP_901459.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: gme:Gmet_1595 SUA5/YciO/YrdC/YwlC YP_901460.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: gsu:GSU0805 cytoplasmic membrane protein FsxA YP_901461.1 TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein-like; KEGG: dar:Daro_0570 PhnA protein YP_901462.1 PFAM: sodium:neurotransmitter symporter; KEGG: pca:Pcar_0402 probable sodium-dependent transporter YP_901463.1 PFAM: protein of unknown function DUF456; KEGG: pca:Pcar_2062 hypothetical protein YP_901464.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: gme:Gmet_0858 cation efflux protein YP_901465.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: gme:Gmet_0857 RecJ exonuclease YP_901466.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gme:Gmet_0856 sugar transporter superfamily YP_901467.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_901468.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_901469.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: gsu:GSU2618 preprotein translocase, YajC subunit YP_901470.1 KEGG: gsu:GSU2619 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase YP_901471.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_901472.1 TIGRFAM: SpoIID/LytB domain; PFAM: Stage II sporulation D domain protein; KEGG: gme:Gmet_0850 stage II sporulation-related protein YP_901473.1 KEGG: gsu:GSU0539 hypothetical protein YP_901475.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: gsu:GSU1279 cobalamin biosynthesis protein CbiM, putative YP_901476.1 TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: gme:Gmet_2440 cobalt ABC transporter CbiQ, permease subunit YP_901477.1 KEGG: gsu:GSU1281 cobalt ABC transporter, ATP-binding protein; TIGRFAM: cobalt ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_901478.1 KEGG: gsu:GSU3130 lipoprotein, putative YP_901479.1 KEGG: gme:Gmet_0356 hypothetical protein YP_901480.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: mmp:MMP0870 glycerate dehydrogenase YP_901481.1 KEGG: sma:SAV397 hypothetical protein YP_901482.1 KEGG: nha:Nham_0818 hypothetical protein YP_901483.1 KEGG: sma:SAV395 hypothetical protein YP_901484.1 KEGG: aba:Acid345_0850 hypothetical protein YP_901485.1 KEGG: sma:SAV393 hypothetical protein YP_901486.1 KEGG: aba:Acid345_0852 hypothetical protein YP_901487.1 KEGG: aba:Acid345_0853 hypothetical protein YP_901488.1 KEGG: gme:Gmet_1137 hypothetical protein YP_901490.1 KEGG: nha:Nham_0824 hypothetical protein YP_901491.1 KEGG: dar:Daro_3601 hypothetical protein YP_901492.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: aba:Acid345_0859 AAA ATPase YP_901493.1 KEGG: nha:Nham_0828 hypothetical protein YP_901495.1 KEGG: gme:Gmet_1130 hypothetical protein YP_901496.1 TIGRFAM: conserved hypothetical phage tail protein; KEGG: sma:SAV382 hypothetical protein YP_901497.1 PFAM: phage tail sheath protein; KEGG: nha:Nham_0832 phage tail sheath protein YP_901498.1 PFAM: transposase, IS4 family protein; KEGG: bha:BH0691 transposase (15) YP_901499.1 KEGG: gsu:GSU0404 hypothetical protein YP_901500.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: gme:Gmet_0698 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme YP_901501.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gme:Gmet_0699 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme YP_901502.1 TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: sat:SYN_01253 cysteine synthase YP_901503.1 catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate YP_901504.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: xcv:XCV0672 putative signal transduction protein YP_901505.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: gsu:GSU1992 transcriptional regulator, Crp/Fnr family YP_901506.1 PFAM: transposase, IS4 family protein; KEGG: eba:p2A202 transposase YP_901507.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_901508.1 KEGG: gme:Gmet_2802 hypothetical protein YP_901509.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: nma:NMA0184 hypothetical protein YP_901511.1 PFAM: Integrase, catalytic region; KEGG: pca:Pcar_1381 hypothetical protein YP_901512.1 PFAM: transposase IS3/IS911 family protein; KEGG: pca:Pcar_1382 hypothetical protein YP_901513.1 PFAM: pseudouridine synthase; KEGG: dps:DP3024 similar to pseudouridine synthase YP_901514.1 KEGG: tcx:Tcr_1420 hypothetical protein YP_901515.1 KEGG: bte:BTH_II1355 pANL12 YP_901517.1 PFAM: DEAD_2 domain protein; SMART: DEXDc2; helicase c2; KEGG: bba:Bd0255 similar to ATP dependent helicase YP_901519.1 KEGG: pcu:pc1476 hypothetical protein YP_901520.1 PFAM: protein of unknown function DUF37; KEGG: cme:CMM140C similar to alpha-hemolysin Pfam: DUF37 YP_901522.1 PFAM: pyruvate kinase; KEGG: sat:SYN_02952 pyruvate kinase YP_901523.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate YP_901524.1 KEGG: bxe:Bxe_A0222 type I site-specific deoxyribonuclease HsdR; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like YP_901525.1 PFAM: protein of unknown function DUF1568; KEGG: rpb:RPB_1952 protein of unknown function DUF1568 YP_901526.1 PFAM: restriction modification system DNA specificity domain; filamentation induced by cAMP protein Fic; Helix-turn-helix, type 11 domain protein; KEGG: dde:Dde_2494 hypothetical protein YP_901527.1 PFAM: N-6 DNA methylase; KEGG: bxe:Bxe_A0224 type I restriction-modification system, M subunit YP_901528.1 PFAM: phage integrase family protein; KEGG: gsu:GSU0064 integrative genetic element Gsu32, integrase YP_901529.1 PFAM: nitroreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cte:CT1150 nitroreductase family protein YP_901530.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hma:rrnAC1954 oxidoreductase YP_901531.1 PFAM: nitroreductase; KEGG: bth:BT0181 putative NADH dehydrogenase/NAD(P)H nitroreductase YP_901532.1 KEGG: cps:CPS_2856 hypothetical protein YP_901533.1 KEGG: cch:Cag_0847 helicase RecD/TraA; TIGRFAM: helicase, RecD/TraA family; SMART: AAA ATPase YP_901534.1 PFAM: SEC-C motif domain protein; KEGG: mag:amb1920 hypothetical protein YP_901535.1 PFAM: protein of unknown function DUF159; KEGG: gsu:GSU0040 hypothetical protein YP_901536.1 PFAM: isochorismatase hydrolase; KEGG: bca:BCE0340 isochorismatase family protein YP_901538.1 PFAM: Exonuclease VII, large subunit; KEGG: pgi:PG1128 exodeoxyribonuclease VII, large subunit YP_901539.1 KEGG: aci:ACIAD3407 hypothetical protein YP_901540.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: pol:Bpro_5415 DNA/RNA non-specific endonuclease YP_901541.1 PFAM: histone family protein DNA-binding protein; KEGG: gme:Gmet_1417 histone-like DNA-binding protein YP_901542.1 PFAM: UvrD/REP helicase; KEGG: bfs:BF1103 putative ATP-dependent DNA helicase YP_901543.1 KEGG: bfs:BF1102 conserved hypothetical protein with RecF/RecN/SMC N-terminal domain YP_901544.1 KEGG: mca:MCA3011 hypothetical protein YP_901545.1 PFAM: SNF2-related protein; helicase domain protein; type III restriction enzyme, res subunit; SMART: DEAD-like helicases-like; KEGG: mca:MCA3005 ATP-dependent RNA helicase, DEAD/DEAH box family YP_901546.1 PFAM: Tubulin/FtsZ, GTPase; Tubulin/FtsZ domain protein; KEGG: gsu:GSU3063 cell division protein FtsZ YP_901547.1 KEGG: gsu:GSU0718 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein YP_901548.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: sat:SYN_03431 hypothetical cytosolic protein YP_901550.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: wsu:WS1660 AAA family ATPase YP_901551.1 TIGRFAM: phage recombination protein Bet; PFAM: RecT protein; KEGG: chy:CHY_1689 prophage LambdaCh01, recombination protein Bet YP_901552.1 KEGG: gsu:GSU2154 hypothetical protein YP_901553.1 PFAM: DNA repair protein RadC; KEGG: gsu:GSU2168 DNA repair protein RadC YP_901554.1 KEGG: bpm:BURPS1710b_3661 hypothetical protein YP_901555.1 PFAM: ATPase associated with various cellular activities, AAA_5; KEGG: lip:LI0185 MoxR-like ATPases YP_901557.1 KEGG: lip:LI0186 hypothetical protein YP_901558.1 PFAM: histone family protein DNA-binding protein; KEGG: gme:Gmet_1833 histone-like DNA-binding protein YP_901559.1 PFAM: von Willebrand factor, type A; KEGG: gsu:GSU2161 hypothetical protein YP_901560.1 KEGG: reu:Reut_D6443 hypothetical protein YP_901561.1 PFAM: histone family protein DNA-binding protein; KEGG: son:SO0548 DNA-binding protein, HU family YP_901569.1 KEGG: gsu:GSU0041 LexA repressor; TIGRFAM: LexA repressor; PFAM: peptidase S24, S26A and S26B; LexA DNA-binding domain protein YP_901570.1 KEGG: gsu:GSU0042 hypothetical protein YP_901571.1 KEGG: gme:Gmet_1437 hypothetical protein YP_901572.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: gme:Gmet_1441 UMUC-like DNA-repair protein YP_901575.1 PFAM: helix-turn-helix domain protein; KEGG: bxe:Bxe_A2402 predicted transcriptional regulator, XRE family YP_901577.1 PFAM: N-acetyltransferase; KEGG: mpa:MAP0501 arylamine N-acetyltransferase YP_901578.1 KEGG: gsu:GSU2401 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_901579.1 PFAM: histone family protein DNA-binding protein; KEGG: mfa:Mfla_0016 histone-like DNA-binding protein YP_901580.1 PFAM: transposase Tn3 family protein; KEGG: sec:SC008 transposase YP_901581.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: sty:HCM1.168 resolvase YP_901582.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: tbd:Tbd_1356 RND efflux system outer membrane lipoprotein NodT YP_901583.1 KEGG: rme:Rmet_1260 hypothetical protein YP_901584.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1359 ABC transporter ATPase YP_901585.1 PFAM: protein of unknown function DUF214; KEGG: tbd:Tbd_1360 ABC transporter permease protein YP_901586.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: eba:ebA6248 hypothetical protein YP_901587.1 PFAM: regulatory protein, TetR; KEGG: eba:ebA6247 transcriptional regulator, TetR family YP_901588.1 KEGG: gsu:GSU3459 hypothetical protein YP_901591.1 PFAM: aldehyde dehydrogenase; KEGG: pca:Pcar_1246 alcohol-acetaldehyde dehydrogenase YP_901592.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bxe:Bxe_B0452 transcriptional regulator, LysR family YP_901593.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis YP_901594.1 PFAM: aconitate hydratase domain protein; KEGG: gsu:GSU1902 3-isopropylmalate dehydratase, small subunit, putative YP_901595.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: gsu:GSU1409 NifU-like domain protein YP_901596.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: gsu:GSU1408 ParA family protein YP_901597.1 KEGG: sat:SYN_00372 SAM-dependent methyltransferases YP_901598.1 PFAM: regulatory protein, ArsR; KEGG: rba:RB10060 probable transcription regulator YP_901599.1 PFAM: Catalase domain protein; KEGG: neu:NE1886 catalase YP_901600.1 KEGG: rfr:Rfer_2360 hypothetical protein YP_901601.1 PFAM: Bile acid:sodium symporter; KEGG: pca:Pcar_1578 sodium/bile acid symporter family protein YP_901602.1 KEGG: gme:Gmet_3511 hypothetical protein YP_901603.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: tko:TK0704 SAM-dependent methyltransferase, UbiE/COQ5 family YP_901604.1 SMART: Rhodanese domain protein; KEGG: dps:DP1064 hypothetical protein YP_901605.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dde:Dde_3544 elongator protein 3/MiaB/NifB YP_901606.1 PFAM: regulatory protein, MarR; KEGG: pca:Pcar_2670 transcriptional regulator, MarR family YP_901607.1 KEGG: hch:HCH_05429 predicted exporters of the RND superfamily YP_901608.1 KEGG: hch:HCH_05427 hypothetical protein YP_901609.1 KEGG: hch:HCH_05426 hypothetical protein YP_901611.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mac:MA2779 hypothetical protein YP_901612.1 PFAM: beta-lactamase domain protein; KEGG: gme:Gmet_3123 beta-lactamase-like YP_901613.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: gsu:GSU1408 ParA family protein YP_901614.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: mta:Moth_1416 nitrogen-fixing NifU-like YP_901615.1 KEGG: pca:Pcar_1975 hypothetical protein YP_901616.1 KEGG: pca:Pcar_0171 hypothetical protein YP_901617.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: dvu:DVU2109 hypothetical protein YP_901618.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Cobyrinic acid a,c-diamide synthase; KEGG: pca:Pcar_1588 iron-sulfur cluster binding protein-like YP_901619.1 PFAM: beta-lactamase domain protein; KEGG: pca:Pcar_1589 hypothetical protein YP_901620.1 PFAM: thioesterase superfamily protein; KEGG: dps:DP2749 hypothetical protein YP_901621.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Cobyrinic acid a,c-diamide synthase; KEGG: pca:Pcar_1585 hypothetical protein YP_901622.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: pca:Pcar_1584 hypothetical protein YP_901623.1 KEGG: sat:SYN_01170 hypothetical cytosolic protein YP_901624.1 KEGG: pca:Pcar_1581 hypothetical protein YP_901625.1 KEGG: tte:TTE0848 ABC-type multidrug transport system, ATPase component YP_901626.1 PFAM: heat shock protein DnaJ domain protein; KEGG: pca:Pcar_0510 DnaJ domain protein YP_901627.1 PFAM: zinc/iron permease; KEGG: dar:Daro_1606 zinc transporter ZIP YP_901628.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: pca:Pcar_0839 cation efflux system protein YP_901629.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pho:PH0981 hypothetical protein YP_901630.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: sat:SYN_00269 ABC-type molybdate transport system, periplasmic component YP_901631.1 KEGG: pca:Pcar_0232 hypothetical protein YP_901632.1 PFAM: Rubrerythrin; KEGG: gme:Gmet_0667 rubrerythrin YP_901633.1 PFAM: ferric-uptake regulator; KEGG: gsu:GSU2809 transcriptional regulator, Fur family YP_901634.1 KEGG: pca:Pcar_1468 hypothetical protein YP_901635.1 PFAM: protein of unknown function UPF0066; KEGG: pab:PAB0452 virR related YP_901636.1 PFAM: molybdopterin biosynthesis MoaE; KEGG: mhu:Mhun_0523 molybdopterin biosynthesis MoaE YP_901637.1 PFAM: Extracellular ligand-binding receptor; KEGG: gsu:GSU2389 ABC transporter, periplasmic substrate-binding protein, putative YP_901638.1 KEGG: pca:Pcar_0299 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation/phosphoacceptor; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_901639.1 KEGG: gsu:GSU0729 iron-sulfur cluster-binding protein YP_901640.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; KEGG: pca:Pcar_1579 pyridine nucleotide-disulfide oxidoreductase/rhodanese domain protein YP_901641.1 KEGG: pca:Pcar_2873 hypothetical protein YP_901642.1 KEGG: pca:Pcar_1580 putative transcriptional regulator, fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase YP_901643.1 KEGG: pca:Pcar_2857 hypothetical protein YP_901644.1 PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: pca:Pcar_2856 hypothetical protein YP_901645.1 KEGG: sat:SYN_01583 hypothetical protein YP_901646.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: psp:PSPPH_1477 cytosine deaminase YP_901647.1 PFAM: YCII-related; KEGG: son:SO2457 hypothetical protein YP_901648.1 PFAM: regulatory protein, ArsR; KEGG: gme:Gmet_0846 transcriptional regulator, ArsR family YP_901649.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gme:Gmet_2408 secretion protein HlyD YP_901650.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_00024 ABC transporter ATP-binding protein YP_901651.1 PFAM: protein of unknown function DUF214; KEGG: gme:Gmet_2406 protein of unknown function DUF214 YP_901652.1 PFAM: protein of unknown function DUF214; KEGG: gme:Gmet_2405 protein of unknown function DUF214 YP_901655.1 PFAM: Mur ligase, middle domain protein; KEGG: cps:CPS_1871 cyanophycin synthetase YP_901656.1 KEGG: bbr:BB2902 hypothetical protein YP_901657.1 KEGG: gsu:GSU2444 sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; extracellular solute-binding protein, family 3 YP_901658.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: gme:Gmet_0798 lysine exporter protein (LysE/YggA) YP_901660.1 PFAM: sulphate transporter; KEGG: son:SO4150 transporter, putative YP_901661.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: gme:Gmet_0219 Orn/DAP/Arg decarboxylase 2 YP_901662.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: gme:Gmet_0106 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_901663.1 PFAM: nitroreductase; KEGG: pca:Pcar_1624 NADPH-oxidoreductase-like YP_901664.1 PFAM: aminotransferase, class I and II; KEGG: pca:Pcar_3031 putative aminotransferase YP_901665.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: ade:Adeh_2183 protein of unknown function DUF6, transmembrane YP_901666.1 KEGG: pca:Pcar_2846 conserved hypothetical protein; putative signal peptide YP_901667.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: gme:Gmet_1046 iron-containing alcohol dehydrogenase YP_901668.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: gsu:GSU1250 sigma-54 dependent DNA-binding response regulator YP_901669.1 KEGG: pca:Pcar_2854 signal transduction histidine kinase regulating C4-dicarboxylate transport system-like; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_901670.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: gsu:GSU1323 hypothetical protein YP_901671.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: gme:Gmet_2451 cytochrome c biogenesis protein, transmembrane region YP_901672.1 PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: gme:Gmet_2452 thioredoxin family protein YP_901673.1 PFAM: Polyprenyl synthetase; KEGG: gme:Gmet_2455 polyprenyl synthetase YP_901674.1 KEGG: gsu:GSU1638 hypothetical protein YP_901675.1 KEGG: gsu:GSU2059 hypothetical protein YP_901676.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_901677.1 KEGG: gsu:GSU2195 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase YP_901678.1 KEGG: gsu:GSU2829 deoxyribodipyrimidine photolyase, putative; TIGRFAM: deoxyribodipyrimidine photolyase; PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein YP_901679.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gme:Gmet_1236 binding-protein-dependent transport systems inner membrane component YP_901680.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gsu:GSU1434 peptide ABC transporter, permease protein YP_901681.1 PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gme:Gmet_0992 cysteine desulfurase YP_901682.1 TIGRFAM: Fe-S cluster assembly protein NifU; PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: gme:Gmet_0991 Fe-S cluster assembly protein NifU YP_901683.1 PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: gme:Gmet_0990 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domains I, II & III YP_901684.1 KEGG: gme:Gmet_0989 hypothetical protein YP_901685.1 PFAM: protein of unknown function DUF178; KEGG: gsu:GSU2017 hypothetical protein YP_901686.1 PFAM: outer membrane efflux protein; KEGG: gsu:GSU1609 outer membrane efflux protein YP_901687.1 TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: gsu:GSU2018 glycine cleavage system H protein YP_901688.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: gme:Gmet_0984 acetyl-CoA carboxylase, biotin carboxylase YP_901689.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: gsu:GSU2020 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_901690.1 PFAM: peptidase M24; KEGG: gsu:GSU2021 xaa-pro dipeptidase YP_901691.1 KEGG: gme:Gmet_0980 hypothetical protein YP_901692.1 PFAM: Tetratricopeptide TPR_4; KEGG: gsu:GSU2024 hypothetical protein YP_901693.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_901694.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_901695.1 KEGG: gme:Gmet_0133 polyphosphate kinase YP_901696.1 KEGG: gsu:GSU0231 hypothetical protein YP_901697.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: gsu:GSU0230 twitching motility protein PilT YP_901698.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: gme:Gmet_2695 glycerate dehydrogenase YP_901699.1 KEGG: gme:Gmet_2371 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; metal-dependent phosphohydrolase, 7TM intracellular region; SMART: metal-dependent phosphohydrolase, HD region YP_901700.1 PFAM: protein of unknown function UPF0054; KEGG: gme:Gmet_2370 hypothetical protein YP_901701.1 PFAM: phosphoesterase, PA-phosphatase related; diacylglycerol kinase; KEGG: gsu:GSU2283 diacylglycerol kinase, putative YP_901702.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: gme:Gmet_2368 CBS:transporter-associated region YP_901703.1 Transfers the fatty acyl group on membrane lipoproteins YP_901704.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: gme:Gmet_2366 peptide chain release factor 2 YP_901707.1 PFAM: NLP/P60 protein; Sporulation domain protein; KEGG: gme:Gmet_2365 NLP/P60:sporulation-related protein YP_901708.1 PFAM: Uncharacterized conserved protein UCP033563; KEGG: gme:Gmet_2364 hypothetical protein YP_901709.1 PFAM: Silent information regulator protein Sir2; KEGG: gsu:GSU3087 transcriptional regulator, Sir2 family YP_901710.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_901711.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_901712.1 Catalyzes the phosphorylation of UMP to UDP YP_901713.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_901714.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate YP_901715.1 PFAM: phosphatidate cytidylyltransferase; KEGG: gme:Gmet_1255 phosphatidate cytidylyltransferase YP_901716.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_901717.1 KEGG: gsu:GSU1914 membrane-associated zinc metalloprotease, putative; TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein YP_901718.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: gme:Gmet_2949 protein of unknown function DUF6, transmembrane YP_901720.1 PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; KEGG: lpp:lpp2798 tRNA nucleotidyltransferase YP_901722.1 PFAM: ABC-2 type transporter; KEGG: gme:Gmet_0014 ABC transporter, permease protein, ABC-2 family YP_901723.1 KEGG: gme:Gmet_0013 daunorubicin resistance ABC transporter ATP-binding subunit; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_901724.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: mag:amb0226 hemerythrin-like protein YP_901725.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: gsu:GSU2760 NAD(P)H oxidoreductase, putative YP_901726.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: gsu:GSU2759 potassium efflux system protein YP_901727.1 KEGG: rba:RB10488 sensory transduction histidine kinase-putative sensory histidine kinase / response regulator hybrid; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_901728.1 PFAM: response regulator receiver; KEGG: mag:amb4144 response regulator containing a CheY-like receiver domain and an HD-GYP domain YP_901729.1 KEGG: hch:HCH_00756 hypothetical protein YP_901730.1 KEGG: mca:MCA1806 fatty acid cis/trans isomerase, putative YP_901732.1 PFAM: protein of unknown function RIO1; ABC-1 domain protein; KEGG: wsu:WS0407 ABC transporter YP_901733.1 KEGG: tdn:Tmden_0931 hypothetical protein YP_901734.1 KEGG: gme:Gmet_1215 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein YP_901735.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_901736.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: gsu:GSU1403 ribosomal large subunit pseudouridine synthase B YP_901737.1 PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: cch:Cag_0325 hypothetical protein YP_901738.1 KEGG: pgi:PG0062 TPR domain protein YP_901739.1 KEGG: gme:Gmet_0050 hypothetical protein YP_901740.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: pfl:PFL_0557 GTPase YjeQ, putative YP_901741.1 KEGG: gme:Gmet_0236 GreA/GreB family elongation factor YP_901742.1 KEGG: pca:Pcar_2635 hypothetical protein YP_901743.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: dar:Daro_4029 TonB-dependent receptor YP_901744.1 PFAM: periplasmic binding protein; KEGG: hpj:jhp1469 putative iron transport system substrate-binding protein YP_901745.1 KEGG: xfa:XFa0046 hypothetical protein YP_901746.1 PFAM: transport system permease protein; KEGG: mac:MA4605 iron(III) ABC transporter, permease protein YP_901747.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH653 iron ABC transporter ATP-binding protein YP_901748.1 PFAM: CobN/magnesium chelatase; KEGG: mma:MM1998 cobalamin biosynthesis protein YP_901749.1 KEGG: mja:MJ0911 magnesium-chelatase subunit; PFAM: magnesium chelatase, ChlI subunit; SMART: AAA ATPase YP_901750.1 KEGG: cte:CT0420 magnesium-chelatase, subunit D/I family; PFAM: magnesium chelatase, ChlI subunit; von Willebrand factor, type A; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_901752.1 KEGG: sco:SCO7037 secreted protein YP_901754.1 PFAM: formylmethanofuran dehydrogenase, subunit E region; KEGG: dsy:DSY0393 formylmethanofuran dehydrogenase subunit E YP_901755.1 KEGG: gsu:GSU1529 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_901756.1 Inhibits transcription at high concentrations of nickel YP_901757.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gme:Gmet_0844 UbiE/COQ5 methyltransferase YP_901758.1 PFAM: alpha/beta hydrolase fold; KEGG: gme:Gmet_0843 alpha/beta hydrolase fold YP_901759.1 KEGG: gsu:GSU2629 8-amino-7-oxononanoate synthase; TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: aminotransferase, class I and II; aminotransferase class-III YP_901760.1 PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; KEGG: gme:Gmet_1104 nucleotidyl transferase YP_901761.1 KEGG: gsu:GSU1872 hypothetical protein YP_901762.1 PFAM: mannose-6-phosphate isomerase, type II; Cupin 2, conserved barrel domain protein; KEGG: gme:Gmet_2471 mannose-6-phosphate isomerase, type II:cupin region YP_901763.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: gme:Gmet_2472 dTDP-4-dehydrorhamnose reductase YP_901764.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: gsu:GSU2366 dTDP-glucose 4,6-dehydratase YP_901765.1 PFAM: Lytic transglycosylase, catalytic; KEGG: sat:SYN_01884 soluble lytic murein transglycosylase YP_901766.1 PFAM: glycosyl transferase, family 9; KEGG: gme:Gmet_1410 glycosyl transferase, family 9 YP_901767.1 PFAM: amine oxidase; KEGG: gsu:GSU1512 amine oxidase, flavin-containing YP_901768.1 PFAM: glycosyl transferase, family 2; KEGG: cac:CAC2172 predicted glycosyltransferase YP_901769.1 PFAM: glycosyl transferase, group 1; KEGG: syn:sll1527 hypothetical protein YP_901770.1 PFAM: glycosyl transferase, family 2; KEGG: gme:Gmet_2884 glycosyl transferase, family 2 YP_901771.1 KEGG: nar:Saro_3234 polysaccharide biosynthesis protein YP_901772.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: neu:NE0484 hypothetical protein YP_901773.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU1505 ABC transporter, ATP-binding protein YP_901774.1 KEGG: gme:Gmet_3252 hypothetical protein YP_901775.1 PFAM: ABC-2 type transporter; KEGG: gsu:GSU1504 ABC transporter, permease protein, ABC-2 family YP_901776.1 PFAM: glycosyl transferase, family 2; KEGG: gsu:GSU1503 glycosyl transferase, group 2 family protein YP_901777.1 catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate YP_901778.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; HDOD; KEGG: gsu:GSU0294 HD domain protein YP_901779.1 PFAM: protein of unknown function DUF815; KEGG: gme:Gmet_1239 protein of unknown function DUF815 YP_901780.1 KEGG: gme:Gmet_1237 hypothetical protein YP_901781.1 PFAM: peptidase M29, aminopeptidase II; KEGG: gme:Gmet_1594 peptidase M29, aminopeptidase II YP_901782.1 KEGG: yps:YPTB0044 deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase YP_901783.1 PFAM: peptidase M16 domain protein; KEGG: gsu:GSU1594 peptidase, M16 family YP_901784.1 KEGG: bxe:Bxe_A3800 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related YP_901785.1 KEGG: tbd:Tbd_1845 putative protease; TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain protein; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region YP_901786.1 PFAM: transposase, IS4 family protein; KEGG: eba:p2A202 transposase YP_901790.1 KEGG: bxe:Bxe_C0709 putative ATPase YP_901791.1 PFAM: Integrase, catalytic region; KEGG: rme:Rmet_6335 integrase, catalytic region YP_901792.1 KEGG: bxe:Bxe_C0711 hypothetical protein YP_901795.1 KEGG: mlo:mlr5464 hypothetical protein YP_901796.1 PFAM: TOPRIM domain protein; SMART: Toprim sub domain protein; KEGG: rso:RSc2483 hypothetical protein YP_901800.1 PFAM: helix-turn-helix domain protein; KEGG: sat:SYN_01508 transcriptional regulator helix turn helix YP_901801.1 KEGG: sat:SYN_03526 hypothetical cytosolic protein YP_901802.1 PFAM: phage integrase family protein; KEGG: eba:ebA751 phage integrase YP_901803.1 PFAM: ABC-3 protein; KEGG: gme:Gmet_0493 ABC-3 YP_901804.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_0492 ABC transporter-related protein YP_901805.1 PFAM: periplasmic solute binding protein; KEGG: gme:Gmet_0491 periplasmic solute binding protein YP_901807.1 PFAM: protein of unknown function UPF0005; KEGG: pca:Pcar_0302 hypothetical protein YP_901808.1 PFAM: protein of unknown function UPF0027; KEGG: gsu:GSU1684 hypothetical protein YP_901809.1 PFAM: protein of unknown function DUF101; KEGG: gsu:GSU1680 hypothetical protein YP_901810.1 PFAM: aldehyde dehydrogenase; KEGG: gme:Gmet_0789 aldehyde dehydrogenase YP_901811.1 KEGG: ade:Adeh_2261 molecular chaperone-like YP_901812.1 PFAM: GTP-binding protein, HSR1-related; KEGG: pca:Pcar_0773 GTP-binding protein YP_901814.1 TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V, RecC subunit; KEGG: gme:Gmet_1894 exodeoxyribonuclease V, RecC subunit YP_901815.1 TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: gme:Gmet_1893 exodeoxyribonuclease V, beta subunit YP_901816.1 TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: gme:Gmet_1892 exodeoxyribonuclease V, alpha subunit YP_901817.1 PFAM: Rubrerythrin; KEGG: dvu:DVU2398 hypothetical protein YP_901818.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: gsu:GSU1029 methyl-accepting chemotaxis protein YP_901819.1 KEGG: aba:Acid345_1177 methylation YP_901821.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: dde:Dde_1846 amino acid carrier protein YP_901822.1 PFAM: FAD dependent oxidoreductase; KEGG: pfl:PFL_5481 hypothetical protein YP_901823.1 PFAM: Fibronectin, type III domain protein; KEGG: gme:Gmet_0292 fibronectin type III domain protein YP_901824.1 PFAM: carbon starvation protein CstA; KEGG: chy:CHY_2217 carbon starvation protein A YP_901825.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; glutamate synthase, alpha subunit domain protein; KEGG: pca:Pcar_2600 pyridine nucleotide-disulfide oxidoreductase YP_901826.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; ferredoxin-dependent glutamate synthase; KEGG: pca:Pcar_2599 glutamate synthase, alpha subunit-like YP_901827.1 KEGG: pca:Pcar_2598 hypothetical protein YP_901830.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_901831.1 KEGG: pca:Pcar_0627 hypothetical protein YP_901832.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pca:Pcar_0629 D-3-phosphoglycerate dehydrogenase YP_901833.1 TIGRFAM: phosphoenolpyruvate phosphomutase; KEGG: pca:Pcar_0628 phosphoenolpyruvate phosphomutase YP_901834.1 KEGG: pca:Pcar_0630 ATP-grasp enzyme-like YP_901835.1 KEGG: mbu:Mbur_0719 hypothetical protein YP_901836.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: gme:Gmet_0905 AAA ATPase, central region YP_901837.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_901838.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: noc:Noc_1911 two component sigma-54 specific, transcriptional regulator, fis family YP_901839.1 KEGG: eba:ebA4694 hypothetical protein YP_901840.1 KEGG: rso:RSc0446 probable lipoprotein YP_901841.1 PFAM: peptidase C39, bacteriocin processing; KEGG: cps:CPS_3210 peptidase, C39 family YP_901842.1 KEGG: neu:NE0788 hypothetical protein YP_901843.1 KEGG: ddi:DDB0189729 hypothetical protein YP_901845.1 PFAM: conserved hypothetical protein 698; KEGG: gsu:GSU2818 hypothetical protein YP_901846.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: gme:Gmet_0186 transcriptional regulator, LysR family YP_901847.1 PFAM: protein of unknown function DUF898, transmembrane; KEGG: gme:Gmet_0097 protein of unknown function DUF898, transmembrane YP_901848.1 PFAM: peptidase M48, Ste24p; KEGG: gsu:GSU0462 peptidase, M48 family YP_901849.1 KEGG: hch:HCH_00756 hypothetical protein YP_901850.1 KEGG: gsu:GSU2623 peptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase YP_901851.1 KEGG: gme:Gmet_0847 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase YP_901852.1 PFAM: Rhomboid family protein; KEGG: gme:Gmet_2385 rhomboid-like protein YP_901853.1 PFAM: type IV pilus assembly PilZ; KEGG: gsu:GSU1240 hypothetical protein YP_901854.1 KEGG: gsu:GSU1241 hypothetical protein YP_901855.1 PFAM: aminotransferase, class I and II; KEGG: gsu:GSU1242 aspartate aminotransferase YP_901856.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_901857.1 TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: gme:Gmet_1760 hypothetical protein YP_901858.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gme:Gmet_0856 sugar transporter superfamily YP_901860.1 PFAM: protein of unknown function UPF0066; KEGG: dps:DP2251 hypothetical protein YP_901862.1 PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: gsu:GSU1372 3-hydroxyisobutyrate dehydrogenase family protein YP_901864.1 KEGG: sat:SYN_01957 hypothetical membrane protein YP_901865.1 PFAM: beta-Ig-H3/fasciclin; KEGG: pca:Pcar_2972 osteoblast specific factor 2-related protein YP_901867.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rso:RS03141 putative resistance transmembrane protein YP_901868.1 PFAM: acriflavin resistance protein; KEGG: rso:RS03142 probable drug efflux pump transmembrane protein YP_901869.1 PFAM: acriflavin resistance protein; KEGG: rso:RS03143 probable drug efflux transmembrane protein YP_901870.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bxe:Bxe_A4364 RND efflux system, outer membrane lipoprotein, NodT family YP_901871.1 PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: gsu:GSU0752 transporter, putative YP_901872.1 PFAM: outer membrane lipoprotein Slp; KEGG: gme:Gmet_1429 outer membrane lipoprotein Slp YP_901873.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: mbu:Mbur_0394 sulphate transporter YP_901875.1 PFAM: flavin reductase domain protein, FMN-binding; KEGG: gme:Gmet_1443 flavin reductase-like, FMN-binding YP_901876.1 PFAM: Lipocalin family protein; KEGG: sat:SYN_00666 lipoprotein YP_901877.1 TIGRFAM: putative methyltransferase; PFAM: O-methyltransferase domain protein; KEGG: bte:BTH_II0980 transcriptional regulator, MerR family YP_901878.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: gsu:GSU0772 NADPH-dependent FMN reductase domain protein YP_901879.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: gme:Gmet_0804 alcohol dehydrogenase superfamily, zinc-containing YP_901880.1 PFAM: regulatory protein, TetR; KEGG: gme:Gmet_0803 transcriptional regulator, TetR family YP_901881.1 KEGG: plt:Plut_1211 hypothetical protein YP_901883.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bte:BTH_II1793 outer membrane efflux protein YP_901884.1 PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: hch:HCH_01212 ABC-type antimicrobial peptide transport system, permease component YP_901885.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bte:BTH_II1791 macrolide efflux protein MacA YP_901886.1 SMART: PDZ/DHR/GLGF domain protein; KEGG: gsu:GSU0331 trypsin domain/PDZ domain protein YP_901887.1 KEGG: gsu:GSU3120 hypothetical protein YP_901889.1 PFAM: Calcium-binding EF-hand-containing protein; KEGG: pfo:Pfl_4199 predicted signal transduction protein containing EFhand domain YP_901891.1 KEGG: pca:Pcar_0363 hypothetical protein YP_901892.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: gsu:GSU3119 sensor histidine kinase YP_901893.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: gsu:GSU3118 DNA-binding response regulator YP_901894.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pca:Pcar_2544 ferredoxin family protein YP_901895.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_901896.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gme:Gmet_2403 tetratricopeptide TPR_4 YP_901897.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; GAF domain protein; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: gme:Gmet_2404 putative GAF sensor protein YP_901898.1 PFAM: 17 kDa surface antigen; KEGG: gsu:GSU2633 lipoprotein, putative YP_901899.1 PFAM: protein of unknown function DUF342; KEGG: bha:BH2430 hypothetical protein YP_901900.1 PFAM: VWA containing CoxE family protein; KEGG: sat:SYN_02573 hypothetical cytosolic protein YP_901901.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pca:Pcar_0437 MoxR-like ATPase YP_901902.1 PFAM: Carboxylyase-related protein; KEGG: gme:Gmet_0993 carboxylyase-related protein YP_901903.1 PFAM: biotin/lipoate A/B protein ligase; KEGG: gme:Gmet_3151 biotin/lipoate A/B protein ligase YP_901904.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_901905.1 KEGG: gsu:GSU2066 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35 YP_901906.1 PFAM: transposase, IS4 family protein; KEGG: eba:p2A202 transposase YP_901907.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: gme:Gmet_0939 AAA ATPase, central region YP_901908.1 KEGG: gsu:GSU0472 hypothetical protein YP_901909.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA family protein; KEGG: gme:Gmet_1189 magnesium and cobalt transport protein CorA YP_901910.1 PFAM: membrane protein of unknown function; KEGG: gme:Gmet_3555 membrane protein of unknown function YP_901913.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: gme:Gmet_1891 tRNA(Ile)-lysidine synthetase-like YP_901914.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate YP_901915.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_901916.1 TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: gme:Gmet_2618 6-phosphogluconolactonase YP_901917.1 KEGG: gsu:GSU1809 cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_901918.1 KEGG: sat:SYN_02778 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS YP_901919.1 PFAM: protein of unknown function DUF147; KEGG: pca:Pcar_0999 conserved hypothetical protein TIGR00159 YP_901920.1 KEGG: gme:Gmet_1887 hypothetical protein YP_901921.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_901922.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_901923.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_901924.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: gme:Gmet_1883 hypothetical protein YP_901925.1 PFAM: CBS domain containing protein; KEGG: gsu:GSU1801 CBS domain protein YP_901926.1 PFAM: protein of unknown function UPF0079; KEGG: gme:Gmet_1881 hypothetical protein YP_901927.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_901928.1 KEGG: gsu:GSU1247 hypothetical protein YP_901929.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: gsu:GSU0065 cytidine/deoxycytidylate deaminase family protein YP_901930.1 KEGG: gme:Gmet_2657 hypothetical protein YP_901932.1 PFAM: proteinase inhibitor I2, Kunitz metazoa; KEGG: gme:Gmet_2665 proteinase inhibitor I2, Kunitz metazoa YP_901935.1 KEGG: gme:Gmet_2659 hypothetical protein YP_901937.1 KEGG: bxe:Bxe_C0711 hypothetical protein YP_901938.1 PFAM: Integrase, catalytic region; KEGG: rme:Rmet_6335 integrase, catalytic region YP_901939.1 KEGG: bxe:Bxe_C0709 putative ATPase YP_901941.1 KEGG: pfl:PFL_4689 hypothetical protein YP_901942.1 PFAM: DNA repair protein RadC; KEGG: gsu:GSU2168 DNA repair protein RadC YP_901944.1 KEGG: dsy:DSY1299 hypothetical protein YP_901945.1 KEGG: pca:Pcar_1424 integration host factor, alpha subunit YP_901948.1 KEGG: mag:amb2047 predicted ATP-dependent Lon-type protease YP_901949.1 PFAM: PglZ domain; KEGG: eba:ebA5249 hypothetical protein YP_901950.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: gka:GK0752 huntingtin interacting protein E-like protein YP_901951.1 PFAM: RelA/SpoT domain protein; KEGG: hypothetical protein YP_901952.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: bps:BPSL1137 hypothetical protein YP_901953.1 KEGG: mag:amb2044 type II restriction enzyme YP_901954.1 KEGG: pol:Bpro_5024 ATPase-like protein YP_901955.1 KEGG: mag:amb2039 hypothetical protein YP_901956.1 KEGG: eba:ebA5220 hypothetical protein YP_901963.1 KEGG: rso:RSc2483 hypothetical protein YP_901965.1 PFAM: phage integrase family protein; KEGG: sat:SYN_01916 DNA integration/recombination/inversion protein YP_901966.1 PFAM: regulatory protein, MerR; KEGG: gsu:GSU1522 transcriptional regulator, putative YP_901967.1 PFAM: histone family protein DNA-binding protein; KEGG: gme:Gmet_1417 histone-like DNA-binding protein YP_901968.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_901969.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_901970.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_901971.1 PFAM: ribosomal protein L35; KEGG: gme:Gmet_1413 ribosomal protein L35 YP_901972.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: gsu:GSU1516 translation initiation factor IF-3 YP_901973.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_901974.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; conserved hypothetical protein 95; methyltransferase small; (Uracil-5)-methyltransferase; KEGG: gsu:GSU1452 RNA methyltransferase, TrmA family YP_901975.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: gsu:GSU1794 HAM1 protein YP_901976.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_901977.1 KEGG: gme:Gmet_1878 DNA uptake protein and related DNA-binding proteins-like YP_901978.1 TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: gsu:GSU1798 2-isopropylmalate synthase/homocitrate synthase family protein YP_901979.1 PFAM: protein of unknown function DUF748; KEGG: gme:Gmet_2829 protein of unknown function DUF748 YP_901980.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: gsu:GSU2653 MATE efflux family protein YP_901981.1 KEGG: gme:Gmet_0874 MiaB-like tRNA modifying enzyme; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB YP_901982.1 PFAM: regulatory protein, LuxR; KEGG: vpa:VPA1447 putative transcriptional regulator, LuxR family YP_901984.1 KEGG: gme:Gmet_0489 hypothetical protein YP_901985.1 PFAM: Chromosomal replication initiator, DnaA; SMART: AAA ATPase; KEGG: gme:Gmet_0747 chromosomal replication initiator protein, DnaA YP_901986.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_901987.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: pca:Pcar_1224 rare lipoprotein A, putative YP_901988.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: gsu:GSU1470 keto/oxoacid ferredoxin oxidoreductase, gamma subunit YP_901989.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin YP_901990.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: gme:Gmet_1362 2-oxoglutarate ferredoxin oxidoreductase YP_901991.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: gme:Gmet_1361 iron-sulfur cluster-binding protein YP_901992.1 Catalyzes the reversible oxidation of malate to oxaloacetate YP_901993.1 PFAM: Peptidoglycan-binding LysM; KEGG: gme:Gmet_1358 peptidoglycan-binding LysM YP_901994.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_901995.1 KEGG: gsu:GSU1267 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B YP_901996.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_901997.1 PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: gsu:GSU0706 major facilitator family transporter YP_901998.1 PFAM: O-methyltransferase, family 2; Methyltransferase type 11; Methyltransferase type 12; KEGG: gme:Gmet_1733 O-methyltransferase, family 2 YP_901999.1 PFAM: protein of unknown function DUF479; KEGG: gme:Gmet_2389 protein of unknown function DUF479 YP_902000.1 KEGG: noc:Noc_0544 hypothetical protein YP_902001.1 TIGRFAM: CRISPR-associated protein Cas2; KEGG: gsu:GSU1393 CRISPR-associated CT1978 family protein YP_902002.1 TIGRFAM: CRISPR-associated protein Cas1; KEGG: pca:Pcar_0964 CRISPR-associated protein Cas1 YP_902003.1 TIGRFAM: CRISPR-associated protein, Cse3 family; KEGG: ttj:TTHB192 hypothetical protein YP_902004.1 TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: sth:STH668 hypothetical protein YP_902005.1 TIGRFAM: CRISPR-associated protein, Cse4 family; KEGG: dge:Dgeo_2632 CRISPR-associated protein, CT1975 YP_902006.1 TIGRFAM: CRISPR-associated protein, Cse2 family; KEGG: ttj:TTHB189 hypothetical protein YP_902007.1 TIGRFAM: CRISPR-associated protein, Cse1 family; KEGG: ttj:TTHB188 comserved hypothetical protein YP_902008.1 KEGG: dge:Dgeo_2629 CRISPR-associated helicase Cas3, core; TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; SMART: DEAD-like helicases-like YP_902009.1 KEGG: sat:SYN_02692 hypothetical cytosolic protein YP_902010.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sat:SYN_02693 acetyltransferase YP_902011.1 KEGG: gsu:GSU1383 exonuclease; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease YP_902012.1 PFAM: peptidase S16, lon domain protein; KEGG: gsu:GSU2433 ATP-dependent protease, putative YP_902013.1 KEGG: gme:Gmet_1349 ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent, C-terminal domain protein; SMART: DEAD-like helicases-like YP_902014.1 PFAM: major facilitator superfamily MFS_1; KEGG: dps:DP0564 hypothetical protein YP_902015.1 PFAM: Chorismate mutase; KEGG: dar:Daro_4076 chorismate mutase YP_902016.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pfl:PFL_5195 acetyltransferase, GNAT family YP_902017.1 PFAM: aldehyde dehydrogenase; KEGG: rme:Rmet_1577 aldehyde dehydrogenase YP_902019.1 PFAM: nitroreductase; KEGG: mba:Mbar_A2465 nitroreductase YP_902020.1 PFAM: putative RNA methylase; THUMP domain protein; KEGG: gsu:GSU3086 hypothetical protein YP_902021.1 KEGG: gsu:GSU0513 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_902022.1 PFAM: glycoside hydrolase, family 3 domain protein; KEGG: pca:Pcar_1318 glycosyl hydrolase, family 3 YP_902023.1 KEGG: dps:DP1025 similar to two-component system sensory/regulatory protein (Ntr family); TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein YP_902024.1 TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein; KEGG: pca:Pcar_2192 shikimate 5-dehydrogenase YP_902025.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_902026.1 type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_902027.1 PFAM: CheD family protein; KEGG: gsu:GSU0726 chemotaxis protein CheD, putative YP_902028.1 PFAM: response regulator receiver; CheW domain protein; KEGG: vvy:VV0958 chemotaxis signal transduction protein YP_902030.1 related to UDP-glucuronosyltransferase-like protein; KEGG: rfr:Rfer_2721 glycosyl transferases related to UDP-glucuronosyltransferase-like YP_902031.1 PFAM: outer membrane efflux protein; KEGG: rso:RS03674 putative outer membrane chanel lipoprotein YP_902032.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: rso:RS03671 probable hemolysin secretion-related transmembrane protein YP_902033.1 KEGG: rso:RSp0292 probable cyclolysin-type secretion composite ATP-binding transmembrane ABC transporter protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter, transmembrane region; ABC transporter related; peptidase C39, bacteriocin processing; SMART: AAA ATPase YP_902034.1 PFAM: Hemolysin-type calcium-binding region; Ig family protein; Haemolysin-type calcium binding domain protein; SMART: Dystroglycan-type cadherin domain protein; KEGG: psp:PSPPH_0815 calcium binding hemolysin protein, putative YP_902035.1 KEGG: psb:Psyr_3089 hemolysin-type calcium-binding region:haemolysin-type calcium binding related YP_902039.1 KEGG: ret:RHE_CH01987 putative integrase protein YP_902040.1 KEGG: gme:Gmet_1784 hypothetical protein YP_902041.1 PFAM: phage integrase family protein; KEGG: gme:Gmet_1783 phage integrase YP_902042.1 PFAM: bacteriophage CI repressor; KEGG: son:SO2652 prophage MuSo2, transcriptional regulator, Cro/CI family YP_902044.1 KEGG: ecs:ECs4945 phage transposase YP_902045.1 KEGG: sat:SYN_02326 AAA-superfamily of ATPases protein YP_902046.1 KEGG: sat:SYN_03367 hypothetical cytosolic protein YP_902047.1 KEGG: son:SO0646 hypothetical protein YP_902049.1 PFAM: peptidase S24, S26A and S26B YP_902056.1 KEGG: son:SO2684 prophage MuSo2, protein Gp32, putative YP_902057.1 KEGG: lma:LmjF34.0690 hypothetical protein, conserved YP_902059.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_902060.1 PFAM: protein of unknown function DUF218; KEGG: gsu:GSU2233 hypothetical protein YP_902061.1 required for 70S ribosome assembly YP_902062.1 TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: gme:Gmet_2324 YjgF-like protein YP_902063.1 KEGG: gme:Gmet_2325 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region YP_902064.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: gsu:GSU2237 DNA-directed RNA polymerase, omega subunit YP_902065.1 Essential for recycling GMP and indirectly, cGMP YP_902066.1 PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: gme:Gmet_2328 hypothetical protein YP_902067.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_902068.1 PFAM: Polyprenyl synthetase; KEGG: gsu:GSU1765 geranyltranstransferase YP_902069.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_902070.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_902071.1 KEGG: gsu:GSU1768 ParA family protein YP_902072.1 PFAM: protein of unknown function DUF610, YibQ; KEGG: gme:Gmet_1850 protein of unknown function DUF610, YibQ YP_902073.1 KEGG: gme:Gmet_1853 peptidase S41A, C-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_902074.1 PFAM: peptidase M23B; KEGG: gme:Gmet_1854 peptidase M23B YP_902075.1 PFAM: protein of unknown function DUF214; KEGG: gme:Gmet_1855 protein of unknown function DUF214 YP_902076.1 KEGG: gme:Gmet_1856 ABC transporter-related protein; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase YP_902077.1 PFAM: type II secretion system protein G; KEGG: gme:Gmet_1857 N-terminal methylation YP_902078.1 KEGG: gsu:GSU1777 general secretion pathway protein G YP_902079.1 KEGG: gme:Gmet_1860 hypothetical protein YP_902080.1 KEGG: gsu:GSU1780 putative type IV pilus assembly protein PilO YP_902081.1 PFAM: Fimbrial assembly family protein; KEGG: gsu:GSU1781 putative type IV pilus assembly protein PilN YP_902082.1 KEGG: gsu:GSU1782 putative type IV pilus assembly protein PilM YP_902083.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: gme:Gmet_1864 type II secretion system protein E YP_902084.1 PFAM: type II secretion system protein; KEGG: gsu:GSU1784 type IV pilus biogenesis protein PilC, putative YP_902085.1 PFAM: glycosyl transferase, family 2; KEGG: gme:Gmet_1870 glycosyl transferase, family 2 YP_902086.1 PFAM: GPR1/FUN34/yaaH family protein; KEGG: mbu:Mbur_0755 GPR1/FUN34/YaaH YP_902087.1 PFAM: transglutaminase domain protein; KEGG: gme:Gmet_1634 transglutaminase-like YP_902088.1 PFAM: protein of unknown function DUF58; KEGG: gme:Gmet_1633 protein of unknown function DUF58 YP_902089.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: gsu:GSU1696 MoxR family protein YP_902090.1 PFAM: NUDIX hydrolase; KEGG: gme:Gmet_0714 NUDIX hydrolase YP_902091.1 KEGG: gvi:glr2540 probable hydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_902092.1 KEGG: pca:Pcar_2870 hypothetical protein YP_902093.1 PFAM: type IV pilus assembly PilZ; KEGG: gme:Gmet_0114 hypothetical protein YP_902094.1 PFAM: Abortive infection protein; KEGG: gme:Gmet_2036 abortive infection protein YP_902095.1 PFAM: DNA polymerase, beta domain protein region; KEGG: eba:ebD37 weak: predicted nucleotidyltransferase YP_902096.1 KEGG: syw:SYNW0469 hypothetical protein YP_902099.1 PFAM: SpoVT/AbrB domain protein; KEGG: gme:Gmet_2502 transcriptional regulator/antitoxin, MazE YP_902100.1 PFAM: PemK family protein; KEGG: tde:TDE2247 PemK family protein YP_902101.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: gsu:GSU1940 sigma-54 dependent DNA-binding response regulator YP_902102.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: gme:Gmet_1993 histidine kinase YP_902103.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility C-terminal domain; KEGG: tbd:Tbd_0099 NAD-dependent epimerase/dehydratase YP_902104.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: gsu:GSU1942 UDP-glucose/GDP-mannose dehydrogenase family protein YP_902105.1 KEGG: dde:Dde_0848 hypothetical protein YP_902106.1 TIGRFAM: eight transmembrane protein EpsH; KEGG: dde:Dde_0847 hypothetical protein YP_902107.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: gsu:GSU1992 transcriptional regulator, Crp/Fnr family YP_902108.1 PFAM: Fibronectin, type III domain protein; KEGG: gsu:GSU1945 fibronectin type III domain protein YP_902109.1 PFAM: protein of unknown function DUF218 YP_902110.1 TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin, Txe/YoeB; KEGG: eba:ebA1543 hypothetical protein YP_902111.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: eba:ebA1542 antitoxin of toxin-antitoxin stability system YP_902112.1 PFAM: protein of unknown function UPF0150; KEGG: noc:Noc_2743 hypothetical protein YP_902113.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: mxa:MXAN_1101 UDP-N-acetylglucosamine 2-epimerase YP_902115.1 KEGG: bxe:Bxe_B2089 hypothetical protein YP_902116.1 PFAM: glycosyl transferase, group 1; KEGG: gme:Gmet_2001 glycosyl transferase, group 1 YP_902117.1 KEGG: dvu:DVUA0053 hypothetical protein YP_902118.1 PFAM: O-antigen polymerase; KEGG: noc:Noc_1955 O-antigen polymerase YP_902119.1 KEGG: ctc:CTC00544 hypothetical protein YP_902120.1 PFAM: glycosyl transferase, group 1; KEGG: tbd:Tbd_0302 glycosyltransferase YP_902122.1 PFAM: polysaccharide biosynthesis protein; KEGG: gsu:GSU1963 polysaccharide biosynthesis domain protein YP_902123.1 PFAM: glycosyl transferase, group 1; KEGG: hch:HCH_02736 glycosyltransferase YP_902124.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: nph:NP1178A homolog 3 to S-adenosylmethionine-dependent methyltransferase 3 YP_902125.1 KEGG: mhu:Mhun_2721 DNA polymerase, beta-like region YP_902126.1 PFAM: glycosyl transferase, group 1; KEGG: noc:Noc_1977 glycosyl transferase, group 1 YP_902127.1 KEGG: noc:Noc_2929 hypothetical protein YP_902129.1 TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase; KEGG: dar:Daro_2408 asparagine synthase, glutamine-hydrolyzing YP_902130.1 PFAM: glycosyl transferase, family 2; KEGG: pfo:Pfl_2017 glycosyl transferase, family 2 YP_902131.1 KEGG: nmu:Nmul_A2522 glycosyl transferase, group 1 YP_902132.1 KEGG: dvu:DVUA0044 hypothetical protein YP_902133.1 PFAM: polysaccharide deacetylase; KEGG: dvu:DVUA0043 polysaccharide deacetylase family protein YP_902134.1 KEGG: gsu:GSU1981 hypothetical protein YP_902135.1 SMART: AAA ATPase; KEGG: gsu:GSU1982 general secretion pathway protein-related protein YP_902136.1 KEGG: gme:Gmet_2028 polysaccharide biosynthesis protein, putative YP_902137.1 PFAM: lipopolysaccharide biosynthesis; KEGG: gsu:GSU1984 polysaccharide chain length determinant protein, putative YP_902138.1 PFAM: polysaccharide export protein; KEGG: gsu:GSU1985 outer membrane protein, putative YP_902139.1 PFAM: sugar transferase; KEGG: gsu:GSU1986 glycosyl transferase domain protein YP_902141.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gsu:GSU1987 TPR domain protein YP_902142.1 KEGG: gme:Gmet_1705 cobalamin B12-binding/radical SAM; PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_902143.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: efa:EF1305 oxygen-independent coproporphyrinogen III oxidase, putative YP_902144.1 PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: gme:Gmet_2395 succinate dehydrogenase YP_902145.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_902146.1 TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; KEGG: gsu:GSU1176 fumarate reductase, cytochrome b subunit, putative YP_902147.1 KEGG: gsu:GSU1175 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase YP_902148.1 KEGG: gsu:GSU1938 hypothetical protein YP_902149.1 PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: gsu:GSU1937 GGDEF domain/HAMP domain protein YP_902150.1 KEGG: gsu:GSU2298 hypothetical protein YP_902151.1 PFAM: carbonic anhydrase; KEGG: gme:Gmet_1242 carbonic anhydrase YP_902152.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era YP_902153.1 TIGRFAM: integral membrane protein MviN; PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: gme:Gmet_2400 virulence factor MviN-like YP_902154.1 PFAM: ROSMUCR transcriptional regulator; KEGG: gsu:GSU1863 transcriptional regulator, Ros/MucR family YP_902155.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_902156.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_902157.1 PFAM: PhoH family protein; SMART: Nucleotide binding protein, PINc; KEGG: gsu:GSU1866 PhoH family protein YP_902158.1 TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase, class V; KEGG: gme:Gmet_1300 cysteine desulphurase related, unknown function YP_902159.1 KEGG: gme:Gmet_1299 lipoprotein, putative YP_902160.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: gsu:GSU1870 GGDEF domain protein YP_902161.1 Catalyzes the rate-limiting step in dNTP synthesis YP_902163.1 PFAM: transposase, IS4 family protein; KEGG: bha:BH0691 transposase (15) YP_902165.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: eba:ebD26 hypothetical protein YP_902166.1 TIGRFAM: nitrogenase-associated protein; KEGG: pca:Pcar_0511 hypothetical protein YP_902167.1 KEGG: gsu:GSU1670 lipoprotein, putative YP_902169.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pca:Pcar_1394 radical SAM domain protein YP_902170.1 KEGG: gme:Gmet_2579 hypothetical protein YP_902171.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: hch:HCH_04404 parvulin-like peptidyl-prolyl isomerase YP_902172.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: gvi:glr4215 cation-transporting ATPase PacL homolog YP_902173.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; KEGG: gme:Gmet_1396 signal transduction histidine kinase, nitrogen specific, NtrB YP_902174.1 PFAM: type II secretion system protein; KEGG: gsu:GSU1493 type IV pilus biogenesis protein PilC YP_902175.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: gsu:GSU1492 twitching motility protein PilT YP_902176.1 TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: gme:Gmet_1393 type II secretion system protein E YP_902177.1 KEGG: gsu:GSU1489 hypothetical protein YP_902178.1 PFAM: conserved hypothetical protein 374; KEGG: gme:Gmet_1389 hypothetical protein YP_902179.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: gme:Gmet_1388 riboflavin kinase / FAD synthetase YP_902180.1 catalyzes branch migration in Holliday junction intermediates YP_902181.1 PFAM: type IV pilus assembly PilZ YP_902182.1 PFAM: beta-lactamase domain protein; KEGG: afu:AF1343 hypothetical protein YP_902183.1 TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; KEGG: gme:Gmet_3530 2',5' RNA ligase YP_902184.1 KEGG: gme:Gmet_1776 hypothetical protein YP_902185.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_902186.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain, oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; RimK domain protein ATP-grasp; KEGG: gme:Gmet_1774 carbamoyl-phosphate synthase, large subunit, glutamine-dependent YP_902187.1 PFAM: protein of unknown function DUF486; KEGG: gsu:GSU1275 hypothetical protein YP_902188.1 PFAM: Radical SAM domain protein; KEGG: gsu:GSU1274 radical SAM domain protein YP_902189.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_902190.1 KEGG: gsu:GSU1272 dihydroorotase, multifunctional complex type; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; Amidohydrolase 3 YP_902191.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_902192.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_902193.1 KEGG: pca:Pcar_2914 superfamily I DNA and RNA helicases-like YP_902194.1 KEGG: neu:NE1599 hypothetical protein YP_902195.1 TIGRFAM: prevent-host-death family protein; KEGG: neu:NE1598 hypothetical protein YP_902196.1 KEGG: gsu:GSU1375 hypothetical protein YP_902197.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rme:Rmet_0456 DEAD/DEAH box helicase-like protein YP_902198.1 KEGG: noc:Noc_0692 hypothetical protein YP_902199.1 PFAM: UvrD/REP helicase; KEGG: gme:Gmet_2724 UvrD/REP helicase YP_902200.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_902202.1 PFAM: FAD linked oxidase domain protein; KEGG: dsy:DSY3357 hypothetical protein YP_902203.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: dsy:DSY3356 hypothetical protein YP_902205.1 PFAM: class II aldolase/adducin family protein; KEGG: pca:Pcar_3030 L-fuculose phosphate aldolase YP_902206.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: gme:Gmet_0929 rod shape-determining protein RodA YP_902207.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: gme:Gmet_0928 penicillin-binding protein, transpeptidase YP_902208.1 KEGG: gme:Gmet_0927 rod shape-determining protein MreD, putative YP_902209.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_902210.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: gsu:GSU2083 glucose-1-phosphate thymidylyltransferase YP_902211.1 TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: gme:Gmet_0923 histidinol phosphatase-related protein YP_902212.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_902213.1 TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: gme:Gmet_1750 peptidase S49, SppA YP_902214.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: gme:Gmet_1749 hypothetical protein YP_902215.1 KEGG: gme:Gmet_1264 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_902216.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_902217.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_902218.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_902219.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_902220.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: gme:Gmet_1260 acetolactate synthase, large subunit, biosynthetic YP_902221.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_902222.1 PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: pca:Pcar_0189 thiamine pyrophosphate-requiring enzymes YP_902223.1 PFAM: protein of unknown function DUF1555 YP_902224.1 KEGG: dde:Dde_3362 transposase (class V) YP_902225.1 KEGG: psb:Psyr_3712 hypothetical protein YP_902226.1 PFAM: NUDIX hydrolase; KEGG: ppr:PBPRA1244 hypothetical protein YP_902227.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: pol:Bpro_5415 DNA/RNA non-specific endonuclease YP_902228.1 KEGG: aci:ACIAD3407 hypothetical protein YP_902229.1 PFAM: protein of unknown function UPF0270; KEGG: pca:Pcar_2862 hypothetical protein YP_902230.1 TIGRFAM: peptidase T-like protein; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: gka:GK2347 tripeptidase YP_902231.1 TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: noc:Noc_0703 exonuclease SbcD YP_902232.1 PFAM: SMC domain protein; KEGG: sat:SYN_00200 exonuclease YP_902233.1 KEGG: pca:Pcar_0661 hypothetical protein YP_902236.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sat:SYN_01021 ErfK/YbiS/YcfS/YnhG family protein YP_902237.1 KEGG: aba:Acid345_1077 guanosine polyphosphate pyrophosphohydrolases/synthetases YP_902238.1 PFAM: peptidase M19, renal dipeptidase; KEGG: gme:Gmet_3505 peptidase M19, renal dipeptidase YP_902239.1 KEGG: gme:Gmet_3504 cobalamin B12-binding/radical SAM; PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_902241.1 KEGG: ana:all3861 unknown protein YP_902242.1 PFAM: transposase, IS4 family protein; KEGG: eba:p2A202 transposase YP_902243.1 PFAM: SEC-C motif domain protein YP_902244.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: gsu:GSU1711 integrative genetic element Gsu5, resolvase YP_902246.1 PFAM: glycosyl transferase, group 1; KEGG: gsu:GSU0624 glycosyl transferase, group 1 family protein YP_902247.1 PFAM: glycosyl transferase, family 2; KEGG: gme:Gmet_2892 glycosyl transferase, family 2 YP_902248.1 KEGG: gsu:GSU0621 hypothetical protein YP_902249.1 PFAM: cytochrome c assembly protein; KEGG: gsu:GSU0614 cytochrome c biogenesis protein, CcmF/CcyK/CcsA family YP_902250.1 PFAM: ResB family protein; KEGG: gsu:GSU0613 ResB-like family protein YP_902251.1 KEGG: gsu:GSU0611 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_902252.1 PFAM: chemotaxis sensory transducer; KEGG: psp:PSPPH_5083 methyl-accepting chemotaxis protein YP_902253.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_902254.1 involved in de novo purine biosynthesis YP_902255.1 KEGG: gsu:GSU0608 hypothetical protein YP_902256.1 KEGG: gsu:GSU0606 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_902257.1 TIGRFAM: thiamine-phosphate pyrophosphorylase; phosphomethylpyrimidine kinase; PFAM: thiamine monophosphate synthase; Phosphomethylpyrimidine kinase type-1; KEGG: gme:Gmet_2909 phosphomethylpyrimidine kinase YP_902258.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_902260.1 KEGG: gsu:GSU1414 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_902261.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate YP_902262.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: gme:Gmet_0092 transcriptional regulator, Crp/Fnr family YP_902263.1 TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: gme:Gmet_0178 transketolase YP_902264.1 TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; KEGG: gme:Gmet_3213 thiamine-monophosphate kinase YP_902265.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: eli:ELI_09835 phenylacetic acid degradation-related protein YP_902266.1 KEGG: gme:Gmet_3214 peptidase S16, ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_902267.1 PFAM: heat shock protein Hsp20; KEGG: gsu:GSU3192 heat shock protein, HSP20 family YP_902268.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis YP_902269.1 PFAM: Saccharopine dehydrogenase; KEGG: gsu:GSU2539 saccharopine dehydrogenase YP_902270.1 KEGG: gme:Gmet_0914 hypothetical protein YP_902271.1 TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: gsu:GSU2538 carboxynorspermidine decarboxylase YP_902272.1 KEGG: gme:Gmet_2991 hypothetical protein YP_902273.1 KEGG: gsu:GSU1529 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_902274.1 KEGG: gsu:GSU0128 primosomal protein n'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_902275.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_3416 ABC transporter-related protein YP_902276.1 KEGG: gsu:GSU3311 hypothetical protein YP_902277.1 KEGG: ftl:FTL_0169 hypothetical protein YP_902278.1 TIGRFAM: integron integrase; PFAM: phage integrase family protein; KEGG: gme:Gmet_2803 integron integrase YP_902279.1 KEGG: vvu:VV12420 chromosome segregation ATPase YP_902280.1 PFAM: transposase, IS4 family protein; KEGG: bha:BH0691 transposase (15) YP_902282.1 PFAM: beta-lactamase domain protein; KEGG: dsy:DSY2788 hypothetical protein YP_902283.1 KEGG: pcu:pc0995 hypothetical protein YP_902284.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: neu:NE1578 hypothetical protein YP_902285.1 PFAM: plasmid stabilization system; KEGG: cch:Cag_0575 hypothetical protein YP_902286.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: gsu:GSU2612 rubrerythrin/rubredoxin protein, putative YP_902288.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cps:CPS_2888 MATE efflux family protein YP_902289.1 PFAM: protein of unknown function DUF1555; KEGG: gsu:GSU1943 hypothetical protein YP_902290.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: syn:slr2101 hypothetical protein YP_902291.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits YP_902292.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: gsu:GSU1756 dihydroorotate dehydrogenase, electron transfer subunit, putative YP_902293.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: gme:Gmet_1843 ribosomal-protein-alanine acetyltransferase YP_902294.1 PFAM: regulatory protein, MarR; KEGG: gsu:GSU1483 transcriptional regulator, MarR family YP_902295.1 PFAM: outer membrane efflux protein; KEGG: gme:Gmet_1376 outer membrane efflux protein YP_902296.1 PFAM: secretion protein HlyD family protein; KEGG: gsu:GSU1481 multidrug resistance protein, putative YP_902297.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: gsu:GSU1480 drug resistance transporter, EmrB/QacA family YP_902298.1 PFAM: surface antigen msp4 family protein; KEGG: gme:Gmet_0802 tia invasion determinant-related protein YP_902299.1 KEGG: gme:Gmet_1172 lipoprotein, putative YP_902300.1 KEGG: gme:Gmet_1171 radical SAM; PFAM: Radical SAM domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Elongator protein 3/MiaB/NifB; Tetratricopeptide domain protein YP_902301.1 PFAM: NLP/P60 protein; Peptidoglycan-binding LysM; KEGG: gme:Gmet_1169 NLP/P60:peptidoglycan-binding LysM YP_902302.1 PFAM: protein of unknown function DUF147; KEGG: gme:Gmet_1168 hypothetical protein YP_902303.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: gsu:GSU0867 ubiquinone/menaquinone biosynthesis methyltransferase YP_902304.1 PFAM: protein of unknown function DUF205; KEGG: gme:Gmet_3020 protein of unknown function DUF205 YP_902305.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: gme:Gmet_3014 lipoprotein, putative YP_902306.1 KEGG: gme:Gmet_2566 hypothetical protein YP_902307.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: gsu:GSU3088 YbaK/EbsC protein YP_902308.1 catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate YP_902309.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_902310.1 PFAM: protein of unknown function DUF1385; KEGG: gsu:GSU3105 hypothetical protein YP_902311.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor YP_902312.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_902313.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_902314.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; KEGG: gme:Gmet_1243 histidine kinase YP_902316.1 PFAM: extracellular solute-binding protein, family 5; KEGG: gme:Gmet_1234 extracellular solute-binding protein, family 5 YP_902317.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gme:Gmet_1233 intermediate filament protein YP_902318.1 KEGG: gme:Gmet_1232 hypothetical protein YP_902319.1 KEGG: gme:Gmet_1231 hypothetical protein YP_902320.1 PFAM: Na+/solute symporter; GAF domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: gme:Gmet_1230 serine phosphatase YP_902321.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: gsu:GSU1427 anti-anti-sigma factor YP_902322.1 PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: gsu:GSU1426 RsbW protein, putative YP_902323.1 KEGG: gsu:GSU3120 hypothetical protein YP_902324.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sth:STH845 RNA polymerase ECF-type sigma factor YP_902326.1 PFAM: histone family protein DNA-binding protein; KEGG: gme:Gmet_1608 histone-like DNA-binding protein YP_902327.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_902328.1 KEGG: gsu:GSU0336 hypothetical protein YP_902329.1 KEGG: gme:Gmet_3358 hypothetical protein YP_902330.1 KEGG: rpc:RPC_0016 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein YP_902331.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: gsu:GSU1626 transcriptional regulator, GntR family YP_902332.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_902333.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_902334.1 PFAM: protein of unknown function DUF28; KEGG: gsu:GSU1074 hypothetical protein YP_902335.1 KEGG: gme:Gmet_0742 hypothetical protein YP_902336.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: gsu:GSU0946 sensory box/GGDEF family protein YP_902337.1 KEGG: dvu:DVU2477 phosphate ABC transporter, periplasmic phosphate-binding protein PstS YP_902338.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: gme:Gmet_3087 methyl-accepting chemotaxis sensory transducer YP_902342.1 KEGG: gme:Gmet_2694 PAS/PAC sensor signal transduction histidine kinase YP_902343.1 PFAM: transposase, IS4 family protein; KEGG: eba:p2A202 transposase YP_902344.1 KEGG: chy:CHY_0880 response regulator/sensory box protein/GGDEF domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_902345.1 KEGG: gme:Gmet_1484 hypothetical protein YP_902346.1 PFAM: phosphatidylserine decarboxylase-related; KEGG: gme:Gmet_1483 phosphatidylserine decarboxylase-related protein YP_902347.1 KEGG: gme:Gmet_1482 hypothetical protein YP_902349.1 PFAM: protein of unknown function UPF0182; KEGG: gsu:GSU2333 hypothetical protein YP_902350.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: pca:Pcar_0098 hypothetical protein YP_902352.1 SMART: AAA ATPase; KEGG: sat:SYN_00051 predicted ATPase with chaperone activity YP_902353.1 PFAM: glycosyl transferase, family 2; KEGG: pca:Pcar_1758 putative glycosyl transferase YP_902354.1 KEGG: gga:396544 telomerase-binding protein p23 Pfam: Cation_efflux BofA Extensin_2 tRNA_synt_1c_R1 NAC Protamine_P2 CS YP_902355.1 KEGG: pca:Pcar_1756 hypothetical protein YP_902356.1 KEGG: gsu:GSU1498 hypothetical protein YP_902357.1 PFAM: protein of unknown function DUF192; KEGG: bba:Bd0471 putative secreted protein YP_902358.1 PFAM: type II secretion system protein; KEGG: sat:SYN_01499 flp pilus assembly protein YP_902359.1 PFAM: type II secretion system protein; KEGG: pol:Bpro_2556 type II secretion system protein YP_902360.1 PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: rso:RSc0652 probable secretion ATPase protein YP_902361.1 KEGG: pca:Pcar_1751 flp pilus assembly protein, ATPase YP_902362.1 PFAM: TadE family protein; KEGG: bte:BTH_I2451 hypothetical protein YP_902363.1 PFAM: type II and III secretion system protein; KEGG: ret:RHE_PE00306 CpaC pilus assembly Q protein YP_902364.1 PFAM: SAF domain; KEGG: pol:Bpro_2548 Flp pilus assembly CpaB YP_902365.1 PFAM: TadE family protein YP_902368.1 KEGG: pae:PA1494 hypothetical protein YP_902369.1 KEGG: sat:SYN_02380 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_902370.1 PFAM: chemotaxis sensory transducer; SMART: histidine kinase, HAMP region domain protein; KEGG: gsu:GSU1294 methyl-accepting chemotaxis protein YP_902371.1 PFAM: MCP methyltransferase, CheR-type; KEGG: mhu:Mhun_0124 MCP methyltransferase, CheR-type YP_902372.1 KEGG: gme:Gmet_2429 anti-sigma-factor antagonist (STAS) domain protein YP_902373.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: gsu:GSU0254 DNA-binding response regulator, LuxR family YP_902374.1 KEGG: gsu:GSU0253 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_902375.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_902376.1 KEGG: dar:Daro_0972 PAS:GGDEF; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; SMART: PAC repeat-containing protein YP_902377.1 PFAM: transposase, IS4 family protein; KEGG: bha:BH0691 transposase (15) YP_902378.1 PFAM: GAF domain protein; SMART: PAS domain containing protein; KEGG: mac:MA4561 sensory transduction histidine kinase YP_902379.1 KEGG: gme:Gmet_3477 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_902380.1 PFAM: response regulator receiver; KEGG: gme:Gmet_3472 response regulator receiver domain protein (CheY-like) YP_902381.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: gme:Gmet_3476 response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase YP_902382.1 PFAM: response regulator receiver; KEGG: gme:Gmet_3477 PAS/PAC sensor hybrid histidine kinase YP_902383.1 KEGG: gme:Gmet_2788 histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_902384.1 PFAM: response regulator receiver; KEGG: noc:Noc_2451 response regulator receiver YP_902385.1 KEGG: ava:Ava_1559 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_902386.1 KEGG: pca:Pcar_2558 signal transduction protein containing a membrane domain an EAL and a GGDEF domain-like; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_902387.1 PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: mbu:Mbur_0820 multisensor signal transduction histidine kinase YP_902388.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: gsu:GSU3319 peptidyl-prolyl cis-trans isomerase A YP_902389.1 KEGG: gsu:GSU0124 competence protein F, putative YP_902390.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: pca:Pcar_1730 Rrf2 family protein YP_902391.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: gme:Gmet_0994 SNF2-related:helicase-like:zinc finger, SWIM-type YP_902393.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: gsu:GSU1622 L-lactate permease YP_902394.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: gme:Gmet_0832 alcohol dehydrogenase superfamily, zinc-containing YP_902395.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_902396.1 KEGG: gme:Gmet_1420 protein-L-isoaspartate(D-aspartate) O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_902397.1 PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: gme:Gmet_1421 sigma 28 (flagella/sporulation) YP_902398.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_902399.1 PFAM: Mur ligase, middle domain protein; KEGG: pca:Pcar_0169 UDP-N-acetylmuramyl pentapeptide synthase-like YP_902400.1 PFAM: permease YjgP/YjgQ family protein; KEGG: neu:NE0801 hypothetical protein YP_902401.1 PFAM: permease YjgP/YjgQ family protein; KEGG: noc:Noc_1909 permease YjgP/YjgQ YP_902402.1 PFAM: metallophosphoesterase; KEGG: nha:Nham_3261 metallophosphoesterase YP_902403.1 KEGG: neu:NE0803 CDP-alcohol phosphatidyltransferase YP_902404.1 PFAM: diacylglycerol kinase, catalytic region; KEGG: nmu:Nmul_A0405 diacylglycerol kinase, catalytic region YP_902405.1 KEGG: neu:NE0805 hypothetical protein YP_902406.1 KEGG: sru:SRU_0858 hypothetical protein YP_902407.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE1613 ABC transporter, fused permease and ATPase domains YP_902408.1 KEGG: neu:NE1566 hypothetical protein YP_902409.1 PFAM: glycosyl transferase, group 1; KEGG: gme:Gmet_2004 glycosyl transferase, group 1 YP_902410.1 KEGG: mag:amb2083 predicted nucleoside-diphosphate-sugar epimerase YP_902411.1 PFAM: Radical SAM domain protein; KEGG: dvu:DVU0182 radical SAM domain protein YP_902412.1 KEGG: sil:SPO2019 ExoV domain protein YP_902414.1 PFAM: glycosyl transferase, family 2; KEGG: gme:Gmet_2884 glycosyl transferase, family 2 YP_902416.1 PFAM: glycosyl transferase, family 2; KEGG: ana:all4431 glycosyl transferase YP_902417.1 PFAM: glycosyl transferase, family 25; KEGG: atc:AGR_C_3727 glycosyl transferase, family 25 YP_902418.1 KEGG: bme:BMEI0212 hypothetical protein YP_902419.1 PFAM: glycosyl transferase, group 1; KEGG: neu:NE2269 glycosyl transferase group 1 YP_902420.1 PFAM: transposase, IS4 family protein; KEGG: eba:p2A202 transposase YP_902421.1 KEGG: pca:Pcar_1526 glycosyl transferases group 1 YP_902422.1 KEGG: mag:amb2083 predicted nucleoside-diphosphate-sugar epimerase YP_902424.1 PFAM: aminotransferase, class V; Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; aminotransferase class-III; KEGG: nmu:Nmul_A0228 8-amino-7-oxononanoate synthase YP_902425.1 PFAM: phosphopantetheine-binding; KEGG: nmu:Nmul_A0229 phosphopantetheine-binding YP_902426.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KR; KEGG: nmu:Nmul_A0230 NAD-dependent epimerase/dehydratase YP_902427.1 PFAM: AMP-dependent synthetase and ligase; KEGG: gox:GOX2058 acyl-CoA synthase YP_902428.1 PFAM: histidine triad (HIT) protein; KEGG: neu:NE0176 hypothetical protein YP_902429.1 KEGG: nmu:Nmul_A0401 hypothetical protein YP_902430.1 KEGG: nmu:Nmul_A0400 hypothetical protein YP_902431.1 PFAM: Nucleotidyl transferase; KEGG: nmu:Nmul_A0425 nucleotidyl transferase YP_902432.1 PFAM: protein of unknown function DUF45; KEGG: gsu:GSU0180 hypothetical protein YP_902433.1 TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: gsu:GSU2460 ribonuclease BN, putative YP_902434.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: gme:Gmet_0116 hydrogenase expression/formation protein HypE YP_902435.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: gsu:GSU0308 hydrogenase expression/formation protein HypD YP_902436.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: gme:Gmet_0118 hydrogenase expression/formation protein (HUPF/HYPC) YP_902437.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC, N-terminal domain; zinc finger, HypF domain protein; KEGG: gme:Gmet_0119 hydrogenase maturation protein HypF YP_902438.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: gsu:GSU0305 hydrogenase accessory protein HypB YP_902439.1 TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis, HypA; KEGG: gsu:GSU0374 hydrogenase expression/formation protein hupa YP_902440.1 PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: rru:Rru_A0321 NADH dehydrogenase (ubiquinone), 20 kDa subunit YP_902441.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rru:Rru_A0318 4Fe-4S ferredoxin, iron-sulfur binding YP_902442.1 PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: rru:Rru_A0317 respiratory-chain NADH dehydrogenase, subunit 1 YP_902443.1 PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; NADH dehydrogenase (ubiquinone), 30 kDa subunit; KEGG: rru:Rru_A0316 NADH-ubiquinone oxidoreductase YP_902444.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rru:Rru_A0315 NADH dehydrogenase (quinone) YP_902445.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: gsu:GSU0085 heterodisulfide reductase, cytochrome reductase subunit YP_902446.1 KEGG: chy:CHY_0933 putative anaerobic sulfite reductase, A subunit YP_902447.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: tvo:TVN0002 formate dehydrogenase, major subunit (formate dehydrogenase alpha subunit) YP_902448.1 PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: rru:Rru_A0321 NADH dehydrogenase (ubiquinone), 20 kDa subunit YP_902449.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rru:Rru_A0318 4Fe-4S ferredoxin, iron-sulfur binding YP_902450.1 PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: rru:Rru_A0317 respiratory-chain NADH dehydrogenase, subunit 1 YP_902451.1 PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; NADH dehydrogenase (ubiquinone), 30 kDa subunit; KEGG: rru:Rru_A0316 NADH-ubiquinone oxidoreductase YP_902452.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rru:Rru_A0315 NADH dehydrogenase (quinone) YP_902453.1 TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52, hydrogen uptake protein; KEGG: pfu:PF0617 hydrogenase maturation protease YP_902454.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: gsu:GSU0085 heterodisulfide reductase, cytochrome reductase subunit YP_902455.1 KEGG: chy:CHY_0933 putative anaerobic sulfite reductase, A subunit YP_902456.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: tvo:TVN0002 formate dehydrogenase, major subunit (formate dehydrogenase alpha subunit) YP_902457.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: ttj:TTHA1328 5'-nucleotidase precursor YP_902458.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: gsu:GSU0224 hypothetical protein YP_902459.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_902460.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_902462.1 PFAM: cobalbumin biosynthesis enzyme; KEGG: gme:Gmet_0466 cobalbumin biosynthesis enzyme YP_902463.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole YP_902464.1 TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: gsu:GSU3008 cobalamin 5'-phosphate synthase YP_902465.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: gsu:GSU0523 para-aminobenzoate synthase, component I YP_902466.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_902468.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: dar:Daro_3308 ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal YP_902469.1 PFAM: response regulator receiver; General secretory system II, protein E domain protein; KEGG: gme:Gmet_1737 response regulator receiver domain protein (CheY-like) YP_902470.1 PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: mma:MM2841 acetolactate synthase large subunit YP_902471.1 PFAM: Phosphoglycerate mutase; KEGG: gme:Gmet_0469 phosphoglycerate/bisphosphoglycerate mutase YP_902472.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: gme:Gmet_0915 HNH endonuclease YP_902473.1 KEGG: gme:Gmet_0758 hypothetical protein YP_902474.1 KEGG: gsu:GSU1085 hypothetical protein YP_902475.1 KEGG: gsu:GSU1084 hypothetical protein YP_902477.1 PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: gme:Gmet_3243 beta-lactamase-like:flavodoxin/nitric oxide synthase YP_902478.1 KEGG: gsu:GSU0673 hypothetical protein YP_902479.1 KEGG: gme:Gmet_0817 hypothetical protein YP_902480.1 KEGG: rfr:Rfer_4078 hypothetical protein YP_902481.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gme:Gmet_2416 radical SAM YP_902482.1 PFAM: YdjC family protein; KEGG: gme:Gmet_2415 YdjC-like protein YP_902483.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: gme:Gmet_2414 hypothetical protein YP_902484.1 KEGG: gsu:GSU2541 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein YP_902485.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: gsu:GSU3058 dihydroorotate dehydrogenase, electron transfer subunit, putative YP_902486.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_902487.1 PFAM: type IV pilus assembly PilZ YP_902488.1 KEGG: pca:Pcar_0399 hypothetical protein YP_902489.1 PFAM: regulatory proteins, IclR; KEGG: gsu:GSU0514 transcriptional regulator, IclR family YP_902490.1 KEGG: gsu:GSU0540 hypothetical protein YP_902491.1 KEGG: gme:Gmet_2983 DNA polymerase A; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2 YP_902492.1 PFAM: transport-associated; KEGG: gme:Gmet_0421 transport-associated YP_902493.1 PFAM: protein of unknown function DUF355; KEGG: gsu:GSU1185 hypothetical protein YP_902494.1 KEGG: bja:bll4651 hypothetical protein; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_902495.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP YP_902496.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pca:Pcar_0829 probable phosphate ABC-transporter, ATP binding protein YP_902497.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pca:Pcar_0828 phosphate ABC-transporter, permease protein-like YP_902498.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pca:Pcar_0827 phosphate ABC-transporter, permease protein-like YP_902499.1 TIGRFAM: phosphate binding protein; KEGG: pca:Pcar_0826 related to phosphate ABC transporter, periplasmic substrate binding protein YP_902500.1 PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: gme:Gmet_2606 GreA/GreB family elongation factor YP_902501.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_902502.1 KEGG: pca:Pcar_1339 hypothetical protein YP_902503.1 KEGG: pca:Pcar_1340 hypothetical protein YP_902504.1 PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mba:Mbar_A2846 hypothetical protein YP_902505.1 PFAM: Fibronectin, type III domain protein; KEGG: sat:SYN_01547 fibronectin type III domain protein YP_902506.1 KEGG: aba:Acid345_0662 parallel beta-helix repeat protein YP_902508.1 KEGG: bxe:Bxe_C0709 putative ATPase YP_902509.1 PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_C0710 putative integrase YP_902510.1 PFAM: Integrase, catalytic region; KEGG: sth:STH1130 transposase YP_902511.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: chy:CHY_1116 ISChy4, transposition helper protein YP_902512.1 KEGG: bxe:Bxe_C0711 hypothetical protein YP_902513.1 PFAM: transposase IS200-family protein; KEGG: rpc:RPC_4507 transposase IS200-like YP_902514.1 KEGG: pgi:PG0116 hypothetical protein YP_902515.1 PFAM: glycosyl transferase, group 1; KEGG: dps:DPPB75 related to polysaccharide biosynthesis protein YP_902516.1 PFAM: transposase, IS4 family protein; KEGG: dsy:DSY3991 hypothetical protein YP_902517.1 PFAM: polysaccharide biosynthesis protein; KEGG: pca:Pcar_1525 hypothetical protein YP_902518.1 PFAM: protein of unknown function DUF354; KEGG: aba:Acid345_2590 protein of unknown function DUF354 YP_902519.1 KEGG: sat:SYN_01152 hypothetical cytosolic protein YP_902520.1 KEGG: pfu:PF0797 hypothetical protein YP_902522.1 KEGG: sme:SMb20651 hypothetical protein YP_902523.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_902524.1 KEGG: chy:CHY_0277 hexapeptide transferase family protein YP_902525.1 PFAM: AMP-dependent synthetase and ligase; KEGG: mhu:Mhun_3158 AMP-dependent synthetase and ligase YP_902526.1 TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase; KEGG: sme:SMb20652 putative asparagine synthetase protein YP_902527.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bcl:ABC3257 short-chain dehydrogenase YP_902528.1 KEGG: pfu:PF0797 hypothetical protein YP_902529.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: nha:Nham_3037 DegT/DnrJ/EryC1/StrS aminotransferase YP_902530.1 KEGG: nha:Nham_3038 transferase hexapeptide repeat YP_902531.1 PFAM: oxidoreductase domain protein; KEGG: ret:RHE_CH01364 probable oxidoreductase protein YP_902532.1 PFAM: sugar transferase; KEGG: ade:Adeh_2455 undecaprenyl-phosphate galactosephosphotransferase YP_902533.1 KEGG: ava:Ava_4846 lipopolysaccharide biosynthesis YP_902534.1 SMART: AAA ATPase; KEGG: gme:Gmet_2466 peptidoglycan-binding domain 1 YP_902535.1 PFAM: lipopolysaccharide biosynthesis; KEGG: tma:TM0644 hypothetical protein YP_902536.1 PFAM: polysaccharide export protein; KEGG: rru:Rru_A3716 polysaccharide export protein YP_902537.1 PFAM: RNP-1 like RNA-binding protein; KEGG: gme:Gmet_2631 RNA-binding region RNP-1 YP_902538.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: gsu:GSU0577 DNA repair protein RecO YP_902539.1 KEGG: gsu:GSU1180 cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_902541.1 KEGG: eba:ebA2996 succinate-semialdehyde dehydrogenase; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase YP_902542.1 TIGRFAM: C_GCAxxG_C_C family protein; KEGG: dsy:DSY2619 hypothetical protein YP_902543.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: gsu:GSU0184 HAD-superfamily hydrolase, subfamily IA, variant 1 YP_902544.1 PFAM: beta-lactamase domain protein; KEGG: tde:TDE1078 metallo-beta-lactamase family protein YP_902545.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid YP_902546.1 TIGRFAM: TonB family protein; KEGG: gme:Gmet_1158 TonB-like YP_902547.1 KEGG: gme:Gmet_3034 putative methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: putative methyltransferase YP_902548.1 KEGG: gsu:GSU1006 hypothetical protein YP_902549.1 KEGG: gme:Gmet_2558 short-chain dehydrogenase/reductase SDR YP_902550.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; KEGG: gsu:GSU1009 GTP-binding protein YP_902551.1 PFAM: penicillin-binding protein, transpeptidase; KEGG: gme:Gmet_2778 penicillin-binding protein, transpeptidase YP_902552.1 PFAM: metallophosphoesterase; KEGG: gsu:GSU2456 UDP-2,3-diacylglucosamine hydrolase, putative YP_902553.1 KEGG: gme:Gmet_2775 hypothetical protein YP_902554.1 PFAM: protein of unknown function UPF0118; KEGG: gsu:GSU2454 hypothetical protein YP_902555.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: gme:Gmet_2772 copper-translocating P-type ATPase:heavy metal translocating P-type ATPase YP_902556.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: gme:Gmet_0183 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_902557.1 PFAM: NUDIX hydrolase; KEGG: gme:Gmet_0265 NUDIX hydrolase YP_902558.1 PFAM: protein of unknown function DUF480; KEGG: gsu:GSU0233 hypothetical protein YP_902559.1 PFAM: secretion protein HlyD family protein; KEGG: gsu:GSU2823 HlyD family secretion protein YP_902560.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_CH03251 probable ABC transporter, ATP-binding protein (consisting of 2 fused ATP-binding domains) YP_902561.1 PFAM: ABC-2 type transporter; KEGG: gme:Gmet_0656 ABC-2 YP_902562.1 PFAM: ABC-2 type transporter; KEGG: gme:Gmet_0655 ABC-2 YP_902563.1 KEGG: gsu:GSU2816 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; GAF domain protein YP_902564.1 PFAM: SlyX family protein; KEGG: eca:ECA4050 host factor for lysis of phiX174 infection YP_902565.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: neu:NE2401 generic methyltransferase YP_902566.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: gme:Gmet_0259 peptidylprolyl isomerase, FKBP-type YP_902567.1 PFAM: dihydrouridine synthase, DuS; KEGG: gme:Gmet_0258 dihydrouridine synthase, DuS YP_902568.1 KEGG: gme:Gmet_0146 hypothetical protein YP_902569.1 PFAM: glycosyl transferase, group 1; KEGG: gme:Gmet_0766 glycosyl transferase, group 1 YP_902570.1 PFAM: glycerate kinase; KEGG: sth:STH2490 glycerate kinase YP_902571.1 PFAM: protein of unknown function UPF0126; KEGG: gme:Gmet_0254 hypothetical protein YP_902572.1 KEGG: gsu:GSU2756 hypothetical protein YP_902573.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages YP_902574.1 KEGG: sat:SYN_03294 hypothetical cytosolic protein YP_902575.1 PFAM: Peptidoglycan-binding LysM; KEGG: gsu:GSU3276 LysM domain protein YP_902576.1 PFAM: protein of unknown function DUF309; KEGG: gsu:GSU1664 hypothetical protein YP_902577.1 KEGG: pca:Pcar_0661 hypothetical protein YP_902578.1 KEGG: gsu:GSU1209 hypothetical protein YP_902579.1 KEGG: gsu:GSU1661 hypothetical protein YP_902580.1 KEGG: gme:Gmet_1546 hypothetical protein YP_902581.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: gme:Gmet_1547 heavy metal efflux pump CzcA YP_902582.1 KEGG: rba:RB3569 hypothetical protein YP_902583.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: gme:Gmet_1548 secretion protein HlyD YP_902584.1 PFAM: outer membrane efflux protein; KEGG: gme:Gmet_1549 outer membrane efflux protein YP_902585.1 PFAM: isochorismatase hydrolase; KEGG: gme:Gmet_2564 isochorismatase hydrolase YP_902588.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: gme:Gmet_0937 HAD-superfamily hydrolase, subfamily IA, variant 1 YP_902589.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: gme:Gmet_0936 HNH endonuclease YP_902590.1 KEGG: gme:Gmet_2974 MutS 2 protein; TIGRFAM: MutS2 family protein; PFAM: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; SMART: MutS III domain protein YP_902591.1 PFAM: Class I peptide chain release factor; KEGG: gsu:GSU0546 peptidyl-tRNA hydrolase domain protein YP_902592.1 PFAM: EAL domain protein; HDOD; KEGG: gsu:GSU1149 EAL domain protein YP_902593.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: gme:Gmet_0934 phospholipid/glycerol acyltransferase YP_902594.1 PFAM: ribonuclease H; KEGG: gsu:GSU2071 ribonuclease HI YP_902595.1 KEGG: gme:Gmet_3417 MglA protein YP_902596.1 PFAM: Roadblock/LC7 family protein; KEGG: gsu:GSU0098 MglB protein YP_902597.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gme:Gmet_0015 radical SAM YP_902598.1 SMART: Rhodanese domain protein; KEGG: nme:NMB0784 phage shock protein E precursor, putative YP_902599.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_902600.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_902601.1 PFAM: DNA polymerase, beta domain protein region; KEGG: neu:NE2224 hypothetical protein YP_902602.1 PFAM: protein of unknown function DUF86; KEGG: neu:NE2225 protein of unknown function DUF86 YP_902603.1 this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae YP_902604.1 KEGG: mta:Moth_2173 hypothetical protein YP_902605.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: gme:Gmet_2838 pseudouridine synthase, RluD YP_902606.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: cac:CAC2945 possible phosphoglycerate dehydrogenase YP_902607.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: gsu:GSU0197 oxidoreductase, short chain dehydrogenase/reductase family YP_902608.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_902609.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_902610.1 KEGG: gsu:GSU0133 hypothetical protein YP_902611.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: gsu:GSU0331 trypsin domain/PDZ domain protein YP_902612.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pca:Pcar_3081 response regulator receiver domain protein (CheY-like) YP_902613.1 PFAM: protein of unknown function DUF299; KEGG: gsu:GSU0450 hypothetical protein YP_902614.1 TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: conserved hypothetical protein 95; methyltransferase small; ribosomal L11 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: gme:Gmet_3386 ribosomal protein L11 methyltransferase YP_902615.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_902616.1 KEGG: gsu:GSU0444 hypothetical protein YP_902617.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_902618.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_902619.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: gme:Gmet_2051 host factor Hfq YP_902621.1 PFAM: protein of unknown function DUF512; KEGG: gme:Gmet_2049 protein of unknown function DUF512 YP_902622.1 KEGG: sat:SYN_01858 protein-disulfide isomerase YP_902623.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: gsu:GSU0008 sensory box histidine kinase/response regulator YP_902624.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_902625.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: gsu:GSU3370 transcriptional regulator, GntR family YP_902626.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; Ion transport 2 domain protein,; KEGG: gme:Gmet_0063 potassium uptake protein, TrkA family YP_902627.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: gme:Gmet_0064 xylose isomerase-like TIM barrel YP_902628.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: gsu:GSU2240 UDP-glucose 4-epimerase YP_902629.1 PFAM: phosphoenolpyruvate carboxylase; KEGG: cte:CT1640 phosphoenolpyruvate carboxylase YP_902630.1 PFAM: carbonic anhydrase; KEGG: gsu:GSU2307 carbonic anhydrase YP_902631.1 PFAM: isochorismatase hydrolase; KEGG: dvu:DVU0033 isochorismatase family protein YP_902632.1 PFAM: plasmid stabilization system; KEGG: gsu:GSU1354 plasmid stabilization system family protein YP_902633.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: gsu:GSU1353 prevent-host-death family protein YP_902634.1 KEGG: gme:Gmet_2437 two component transcriptional regulator, winged helix family YP_902635.1 PFAM: Mg2+ transporter protein, CorA family protein; KEGG: dar:Daro_3905 Mg2+ transporter protein, CorA-like YP_902636.1 KEGG: gme:Gmet_0835 hypothetical protein YP_902637.1 KEGG: sat:SYN_00385 hypothetical protein YP_902638.1 KEGG: pcu:pc0812 hypothetical protein YP_902639.1 PFAM: NUDIX hydrolase; KEGG: gme:Gmet_1790 NUDIX hydrolase YP_902640.1 TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: gsu:GSU0820 signal peptide peptidase SppA, 36K type YP_902641.1 PFAM: glutamine amidotransferase class-I; KEGG: gsu:GSU0936 glutamine amidotransferase, class I YP_902642.1 PFAM: Na+/H+ antiporter NhaA; KEGG: gsu:GSU2303 Na+/H+ antiporter family protein YP_902643.1 PFAM: protein of unknown function UPF0153; KEGG: xcb:XC_0357 proteinase inhibitor YP_902644.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gsu:GSU3059 radical SAM domain protein YP_902645.1 KEGG: pfl:PFL_3798 chitinase domain protein YP_902646.1 KEGG: rsp:RSP_2050 hypothetical protein YP_902647.1 KEGG: pca:Pcar_2474 hypothetical protein YP_902648.1 PFAM: domain of unknown function DUF1745; KEGG: pca:Pcar_2474 hypothetical protein YP_902649.1 KEGG: eba:ebA2553 hypothetical protein YP_902650.1 PFAM: TM2 domain containing protein+B7201; KEGG: plt:Plut_0289 hypothetical protein YP_902651.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gsu:GSU0886 radical SAM domain protein YP_902652.1 KEGG: gsu:GSU2511 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE4 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_902653.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: gsu:GSU1035 methyl-accepting chemotaxis protein YP_902654.1 KEGG: gsu:GSU0357 cytochrome c family protein YP_902655.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: gsu:GSU3447 AhpC/TSA family protein YP_902656.1 PFAM: YceI family protein; KEGG: gme:Gmet_3449 YceI YP_902657.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; KEGG: mhu:Mhun_1352 multi-sensor signal transduction histidine kinase YP_902658.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: gsu:GSU1019 xanthine/uracil permease family protein YP_902659.1 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively YP_902660.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 11; KEGG: gme:Gmet_0381 modification methylase HemK YP_902661.1 PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: gsu:GSU2189 sensor histidine kinase YP_902662.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: gme:Gmet_2722 peptidyl-prolyl cis-trans isomerase, cyclophilin type YP_902663.1 KEGG: gsu:GSU1529 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_902664.1 KEGG: pca:Pcar_2710 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation/phosphoacceptor; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_902665.1 KEGG: pca:Pcar_0299 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation/phosphoacceptor; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_902666.1 PFAM: response regulator receiver; KEGG: noc:Noc_1757 response regulator receiver YP_902667.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: gme:Gmet_2811 PAS/PAC sensor signal transduction histidine kinase YP_902668.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: gme:Gmet_2546 ribonuclease E and G YP_902669.1 TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: gme:Gmet_2360 lysyl-tRNA synthetase, class-2 YP_902670.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: gsu:GSU2270 ABC transporter, permease protein YP_902671.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU2269 ABC transporter, ATP-binding protein YP_902672.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: gme:Gmet_2357 surface antigen (D15) YP_902673.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: gsu:GSU2267 outer membrane protein, putative YP_902674.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis YP_902675.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_902676.1 TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: gme:Gmet_2353 UDP-N-acetylglucosamine acyltransferase YP_902677.1 PFAM: oxidoreductase domain protein; KEGG: gsu:GSU2263 oxidoreductase, Gfo/Idh/MocA family YP_902678.1 PFAM: aminotransferase, class V; Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: gme:Gmet_2351 DegT/DnrJ/EryC1/StrS aminotransferase YP_902679.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM YP_902680.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU2260 ABC transporter, ATP-binding protein, MsbA family YP_902681.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: gsu:GSU3420 lipid A biosynthesis lauroyl acyltransferase, putative YP_902682.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: gsu:GSU2259 3-deoxy-D-manno-octulosonic-acid transferase, putative YP_902683.1 KEGG: gme:Gmet_2347 tetraacyldisaccharide-1-P 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase YP_902684.1 PFAM: protein of unknown function DUF343; KEGG: dvu:DVU0656 hypothetical protein YP_902687.1 KEGG: rsp:RSP_2746 hypothetical protein YP_902688.1 PFAM: glycosyl transferase, family 9; KEGG: mca:MCA2713 lipopolysaccharide heptosyltransferase-1, putative YP_902689.1 PFAM: glycosyl transferase, group 1; KEGG: mca:MCA2126 glycosyl transferase, group 1 family protein YP_902690.1 KEGG: sat:SYN_02645 hypothetical membrane protein YP_902691.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: gsu:GSU3288 ThiF family protein YP_902692.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_902693.1 KEGG: gsu:GSU0023 TPR domain protein YP_902694.1 KEGG: mca:MCA2501 hypothetical protein YP_902695.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_902696.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase, class I and II; KEGG: gme:Gmet_0385 histidinol-phosphate aminotransferase YP_902697.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_902698.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_902699.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_902700.1 KEGG: gme:Gmet_1918 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_902701.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; KEGG: gsu:GSU1891 response regulator YP_902702.1 TIGRFAM: RNA polymerase sigma factor RpoD; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: gme:Gmet_0395 RNA polymerase sigma factor RpoD-like YP_902703.1 KEGG: gme:Gmet_0394 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein YP_902704.1 PFAM: Colicin V production protein; KEGG: gme:Gmet_0393 colicin V production protein YP_902706.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_902707.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_902708.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_902709.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_902710.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_902711.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Hemerythrin HHE cation binding domain protein; KEGG: gsu:GSU1030 methyl-accepting chemotaxis protein YP_902712.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_902713.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_902714.1 catalyzes the interconversion of tetrahydrodipicolinate and L,L-diaminopimelate in lysine biosynthesis YP_902715.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_902716.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_902717.1 PFAM: conserved hypothetical protein 730; KEGG: gsu:GSU1904 decarboxylase family protein YP_902718.1 KEGG: gsu:GSU2090 hypothetical protein YP_902719.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_902720.1 KEGG: gsu:GSU0996 hypothetical protein YP_902721.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: gme:Gmet_0834 hemerythrin-like, metal-binding protein YP_902722.1 KEGG: gsu:GSU2433 ATP-dependent protease, putative YP_902723.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: gme:Gmet_2382 metal dependent phosphohydrolase YP_902724.1 KEGG: nwi:Nwi_1062 NAD-dependent DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: NAD-dependent DNA ligase-like YP_902726.1 KEGG: bxe:Bxe_A3090 hypothetical protein YP_902728.1 KEGG: gme:Gmet_2927 hypothetical protein YP_902729.1 PFAM: heat shock protein Hsp20; CS; KEGG: gme:Gmet_2986 heat shock protein HSP20 YP_902730.1 TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; KEGG: gme:Gmet_2561 dihydrouridine synthase TIM-barrel protein nifR3 YP_902731.1 KEGG: gsu:GSU1004 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_902732.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: gme:Gmet_2563 two component, sigma54 specific, transcriptional regulator, fis family YP_902733.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_902735.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: aba:Acid345_3023 biotin/lipoyl attachment YP_902736.1 PFAM: carboxyl transferase; KEGG: aba:Acid345_3025 carboxyl transferase YP_902737.1 Converts oxaloacetate to phosphoenolpyruvate using ATP as an energy source YP_902738.1 forms a direct contact with the tRNA during translation YP_902739.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_902740.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit; KEGG: gsu:GSU3383 glutamyl-tRNA(Gln) amidotransferase, C subunit YP_902741.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_902742.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_902743.1 PFAM: response regulator receiver; KEGG: gsu:GSU3198 chemotaxis protein CheY YP_902744.1 PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: gsu:GSU3199 chemotaxis protein CheA YP_902745.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: gme:Gmet_3207 outer membrane lipoprotein carrier protein LolA YP_902746.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_902747.1 KEGG: gsu:GSU3205 MiaB-like tRNA modifying enzyme YliG; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB YP_902748.1 PFAM: zinc finger, DksA/TraR C4-type; KEGG: gsu:GSU3206 DnaK suppressor protein, putative YP_902749.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF362; KEGG: gme:Gmet_3040 hypothetical protein YP_902751.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: sco:SCO0125 oxidoreductase YP_902752.1 PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; KR; KEGG: son:SO1602 multi-domain beta-ketoacyl synthase YP_902753.1 PFAM: beta-ketoacyl synthase; acyl transferase domain protein; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: sco:SCO0127 multi-domain beta keto-acyl synthase YP_902754.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_902755.1 PFAM: alpha/beta hydrolase fold; KEGG: sdn:Sden_1370 alpha/beta hydrolase fold YP_902756.1 KEGG: yps:YPTB1722 hypothetical protein YP_902757.1 PFAM: CheW domain protein; KEGG: gsu:GSU0297 purine-binding chemotaxis protein CheW YP_902758.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: gsu:GSU1374 methyl-accepting chemotaxis protein YP_902759.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: gsu:GSU2581 sigma-54 dependent transcriptional regulator YP_902760.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: pca:Pcar_0336 putative transcriptional regulator, fis family YP_902761.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pca:Pcar_0903 putative short chain oxidoreductase YP_902762.1 KEGG: pca:Pcar_0290 signal transduction histidine kinase regulating C4-dicarboxylate transport system-like YP_902763.1 PFAM: UspA domain protein; KEGG: mac:MA3944 universal stress protein YP_902764.1 PFAM: protein of unknown function DUF124; KEGG: xoo:XOO4517 hypothetical protein YP_902765.1 PFAM: protein of unknown function DUF533; KEGG: ret:RHE_CH03634 hypothetical protein YP_902766.1 KEGG: pca:Pcar_3034 hypothetical protein YP_902768.1 Catalyzes the specific recognition and activation of amino acids during peptide synthesis YP_902769.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: xoo:XOO4216 NAD(P)H steroid dehydrogenase YP_902770.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: gvi:gll1951 phosphopantetheinyltransferase family protein YP_902771.1 KEGG: nha:Nham_0568 recombinase YP_902772.1 PFAM: phage integrase family protein; KEGG: gsu:GSU0064 integrative genetic element Gsu32, integrase YP_902773.1 PFAM: protein of unknown function DUF891; KEGG: ana:all2402 hypothetical protein YP_902774.1 KEGG: pcu:pc0995 hypothetical protein YP_902775.1 PFAM: helix-turn-helix domain protein; KEGG: sat:SYN_01508 transcriptional regulator helix turn helix YP_902776.1 KEGG: sgl:SG1178 hypothetical protein YP_902777.1 PFAM: DnaB domain protein helicase, C-terminal domain protein; KEGG: ilo:IL1933 replicative DNA helicase YP_902781.1 KEGG: son:SO4261 hypothetical protein YP_902782.1 KEGG: sec:SC2612 hypothetical protein YP_902786.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: dsy:DSY1921 hypothetical protein YP_902787.1 PFAM: protein of unknown function DUF162; KEGG: dsy:DSY1922 hypothetical protein YP_902789.1 KEGG: gme:Gmet_1474 hypothetical protein YP_902790.1 PFAM: ATP-binding region, ATPase domain protein domain protein; metal-dependent phosphohydrolase, HD sub domain; HDOD; KEGG: dar:Daro_3744 ATP-binding region, ATPase-like:histidine kinase A, N-terminal YP_902791.1 KEGG: dar:Daro_3743 PAS:GGDEF; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold domain protein; SMART: PAS domain containing protein YP_902792.1 PFAM: domain of unknown function DUF1745; KEGG: pca:Pcar_2474 hypothetical protein YP_902793.1 PFAM: Roadblock/LC7 family protein; KEGG: pca:Pcar_2475 hypothetical protein YP_902794.1 KEGG: pca:Pcar_2476 hypothetical protein YP_902795.1 KEGG: pca:Pcar_2477 hypothetical protein YP_902796.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pca:Pcar_2478 sporulation initiation inhibitor YP_902797.1 KEGG: pca:Pcar_2479 hypothetical protein YP_902798.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: gsu:GSU2579 methyl-accepting chemotaxis protein YP_902799.1 PFAM: diacylglycerol kinase, catalytic region; KEGG: gme:Gmet_2741 hypothetical protein YP_902800.1 KEGG: gme:Gmet_0881 hypothetical protein YP_902801.1 KEGG: dps:DP1925 similar to two-component system sensory/regulatory protein (Ntr family); TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_902802.1 PFAM: GGDEF domain containing protein; KEGG: rme:Rmet_5660 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) YP_902804.1 PFAM: SEC-C motif domain protein; KEGG: pca:Pcar_2883 sec-C motif domain protein YP_902805.1 PFAM: transposase, IS4 family protein; KEGG: eba:p2A202 transposase YP_902806.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: gme:Gmet_2693 two component transcriptional regulator, winged helix family YP_902807.1 KEGG: gme:Gmet_2694 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_902808.1 TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: pca:Pcar_0655 phosphate transport system substrate-binding protein YP_902809.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pca:Pcar_0656 ABC-type uncharacterized transport system permease component-like YP_902810.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pca:Pcar_0657 phosphate transport system permease protein YP_902811.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_902812.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: gsu:GSU1095 phosphate transport system regulatory protein PhoU YP_902813.1 KEGG: ade:Adeh_1998 periplasmic sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; SMART: PAS domain containing protein YP_902814.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: ade:Adeh_1997 two component transcriptional regulator, LuxR family YP_902815.1 KEGG: dar:Daro_0675 PAS:GGDEF; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_902816.1 PFAM: CheB methylesterase; MCP methyltransferase, CheR-type; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: dvu:DVU0449 sensor/response regulator YP_902817.1 PFAM: response regulator receiver; KEGG: gme:Gmet_1243 histidine kinase YP_902818.1 KEGG: gsu:GSU0157 fibronectin type III domain protein YP_902819.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_902820.1 KEGG: gsu:GSU0155 hypothetical protein YP_902821.1 PFAM: NUDIX hydrolase; KEGG: gsu:GSU0154 mutT/nudix family protein YP_902822.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_902823.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_902824.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_902825.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_902826.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: gme:Gmet_0202 response regulator receiver sensor signal transduction histidine kinase YP_902827.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_902828.1 PFAM: regulatory protein RecX; KEGG: gsu:GSU0147 regulatory protein RecX YP_902829.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: gsu:GSU0146 twitching motility protein PilT YP_902830.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_902831.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: nmu:Nmul_A1104 proton-translocating NADH-quinone oxidoreductase, chain N YP_902832.1 KEGG: gme:Gmet_3343 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_902833.1 KEGG: bba:Bd3888 NADH dehydrogenase I chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I) YP_902834.1 PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: ade:Adeh_4197 NADH-ubiquinone oxidoreductase, chain 4L YP_902835.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: bte:BTH_I1070 NADH dehydrogenase I, J subunit YP_902836.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: ade:Adeh_2564 4Fe-4S ferredoxin, iron-sulfur binding protein YP_902837.1 PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: ade:Adeh_2565 respiratory-chain NADH dehydrogenase, subunit 1 YP_902838.1 PFAM: ferredoxin; molybdopterin oxidoreductase Fe4S4 region; KEGG: ade:Adeh_2566 ferredoxin YP_902839.1 PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: bba:Bd3083 NADH dehydrogenase I, F subunit YP_902840.1 TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: lpp:lpp2832 NADH dehydrogenase I chain E YP_902841.1 PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; KEGG: ade:Adeh_2567 NADH dehydrogenase (ubiquinone) YP_902842.1 TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone), 30 kDa subunit; KEGG: atc:AGR_C_2342 NADH dehydrogenase I chain C YP_902843.1 KEGG: ade:Adeh_2569 NADH-quinone oxidoreductase, B subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit YP_902844.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; KEGG: bbr:BB3841 probable NADH-ubiquinone oxidoreductase chain 3 YP_902845.1 PFAM: Peptidoglycan-binding LysM; ErfK/YbiS/YcfS/YnhG family protein; KEGG: gme:Gmet_2463 peptidoglycan-binding LysM:ErfK/YbiS/YcfS/YnhG YP_902846.1 KEGG: gsu:GSU3133 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase YP_902847.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: gsu:GSU0082 ribosomal large subunit pseudouridine synthase D YP_902848.1 KEGG: gme:Gmet_3436 hypothetical protein YP_902849.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: gme:Gmet_3437 peptidase S1C, Do YP_902850.1 PFAM: peptidase M48, Ste24p; KEGG: gme:Gmet_0109 peptidase M48, Ste24p YP_902851.1 PFAM: ThiJ/PfpI domain protein; KEGG: gsu:GSU0074 enhancing lycopene biosynthesis protein 2 YP_902852.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: gsu:GSU0075 hypothetical protein YP_902853.1 KEGG: xcv:XCV3330 putative MFS transporter, AGZA family, xanthine/uracil permease YP_902854.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ava:Ava_4333 HAD-superfamily hydrolase, subfamily IA, variant 1 YP_902855.1 KEGG: gsu:GSU1667 hypothetical protein YP_902856.1 PFAM: protein of unknown function DUF985; KEGG: gsu:GSU0173 hypothetical protein YP_902857.1 KEGG: gsu:GSU0076 hypothetical protein YP_902858.1 KEGG: gsu:GSU0923 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_902859.1 PFAM: protein of unknown function DUF140; KEGG: gsu:GSU0924 ABC transporter, permease protein, putative YP_902860.1 PFAM: protein of unknown function DUF820; KEGG: gka:GK2126 hypothetical protein YP_902861.1 KEGG: syf:Synpcc7942_1655 hypothetical protein YP_902862.1 PFAM: Methyltransferase type 11; KEGG: gme:Gmet_2793 hypothetical protein YP_902863.1 PFAM: protein of unknown function DUF55; KEGG: gsu:GSU2275 hypothetical protein YP_902864.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_2542 ABC transporter-related protein YP_902865.1 PFAM: Mammalian cell entry related domain protein; KEGG: gme:Gmet_2541 mammalian cell entry-related protein YP_902866.1 PFAM: peptidase M16 domain protein; KEGG: gsu:GSU0927 peptidase, M16 family YP_902867.1 PFAM: peptidase M16 domain protein; KEGG: gsu:GSU0928 peptidase, M16 family YP_902868.1 PFAM: Anti-sigma-28 factor, FlgM family protein; KEGG: gme:Gmet_2286 anti-sigma-28 factor, FlgM YP_902869.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+ YP_902870.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_902871.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_902872.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport YP_902873.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_902874.1 subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_902875.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_902876.1 PFAM: Ion transport protein; Ion transport 2 domain protein,; KEGG: dde:Dde_3005 potassium channel protein YP_902877.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: pca:Pcar_1354 cation-transporting ATPase YP_902878.1 PFAM: glycosyl transferase, family 2; KEGG: gsu:GSU3460 glycosyl transferase, group 2 family protein YP_902879.1 PFAM: transposase, IS4 family protein; KEGG: eba:p2A202 transposase YP_902880.1 KEGG: gme:Gmet_3404 pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA YP_902881.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: gsu:GSU2993 cobalamin biosynthesis protein CbiG, putative YP_902882.1 KEGG: gsu:GSU2994 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_902883.1 PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: mlo:mll2060 outer membrane protein YP_902884.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gsu:GSU0496 efflux transporter, RND family, MFP subunit YP_902885.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_3037 ABC transporter-related protein YP_902886.1 PFAM: protein of unknown function DUF214; KEGG: gme:Gmet_3036 protein of unknown function DUF214 YP_902887.1 PFAM: acyl-ACP thioesterase; KEGG: gme:Gmet_1732 acyl-ACP thioesterase YP_902888.1 PFAM: histidine triad (HIT) protein; KEGG: gsu:GSU0530 HIT family protein YP_902889.1 PFAM: peptidase M16 domain protein; KEGG: gsu:GSU3360 peptidase, M16 family YP_902890.1 PFAM: type IV pilus assembly PilZ; KEGG: gsu:GSU0943 hypothetical protein YP_902891.1 PFAM: transglutaminase domain protein; KEGG: gme:Gmet_0053 transglutaminase-like YP_902892.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: gsu:GSU3374 ribulose-phosphate 3-epimerase YP_902893.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: gme:Gmet_0066 Fmu, rRNA SAM-dependent methyltransferase:Nop2p YP_902894.1 PFAM: peptidase M48, Ste24p; KEGG: gsu:GSU1567 peptidase, M48 family YP_902895.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_902896.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_902897.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pca:Pcar_2451 hypothetical protein YP_902899.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_902900.1 PFAM: Rh family protein/ammonium transporter; KEGG: gsu:GSU1221 ammonium transporter, putative YP_902901.1 KEGG: rfr:Rfer_3382 hypothetical protein YP_902902.1 PFAM: NUDIX hydrolase; KEGG: bfr:BF3885 putative NTP pyrophosphohydrolase YP_902903.1 KEGG: gme:Gmet_3224 hypothetical protein YP_902904.1 PFAM: FAD linked oxidase domain protein; KEGG: gsu:GSU3296 glycolate oxidase subunit GlcD, putative YP_902905.1 KEGG: gme:Gmet_0894 hypothetical protein YP_902906.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_902907.1 PFAM: alanine racemase domain protein; KEGG: gme:Gmet_0896 hypothetical protein YP_902908.1 PFAM: conserved hypothetical protein 341; KEGG: gsu:GSU2346 hypothetical protein YP_902909.1 PFAM: MscS Mechanosensitive ion channel; KEGG: gsu:GSU1723 mechanosensitive ion channel family protein YP_902911.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ana:alr3504 unknown protein YP_902912.1 PFAM: dihydrodipicolinate reductase; KEGG: tte:TTE0831 dihydrodipicolinate reductase YP_902913.1 KEGG: gsu:GSU2361 alpha amylase family protein; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain YP_902914.1 KEGG: gme:Gmet_2391 glycoside hydrolase, family 77; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77 YP_902915.1 PFAM: protein of unknown function DUF490; KEGG: gme:Gmet_2809 protein of unknown function DUF490 YP_902916.1 PFAM: surface antigen (D15); KEGG: gme:Gmet_2808 surface antigen (D15) YP_902917.1 TIGRFAM: malto-oligosyltrehalose synthase; SMART: alpha amylase, catalytic sub domain; KEGG: gsu:GSU2360 maltooligosyltrehalose synthase, putative YP_902918.1 PFAM: glycoside hydrolase, family 57; KEGG: gsu:GSU2359 hypothetical protein YP_902919.1 KEGG: gme:Gmet_3467 malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain YP_902920.1 PFAM: trehalose-phosphatase; KEGG: gsu:GSU2336 trehalose-phosphatase YP_902921.1 PFAM: glycosyl transferase, family 20; KEGG: rfr:Rfer_2163 alpha,alpha-trehalose-phosphate synthase (UDP-forming) YP_902922.1 PFAM: regulatory protein, MarR; KEGG: gsu:GSU2362 transcriptional regulator, MarR family YP_902923.1 PFAM: Cl- channel, voltage-gated family protein; KEGG: cac:CAC0442 permease, putative chloride channel YP_902924.1 PFAM: purine and other phosphorylases, family 1; KEGG: gsu:GSU0453 MTA/SAH nucleosidase YP_902925.1 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis YP_902926.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_902927.1 PFAM: Ankyrin; KEGG: gme:Gmet_0162 ankyrin YP_902928.1 PFAM: peptidase M48, Ste24p; KEGG: sat:SYN_02199 Zn-dependent protease with chaperone function YP_902929.1 PFAM: protein of unknown function DUF191; KEGG: gme:Gmet_3380 protein of unknown function DUF191 YP_902930.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: bja:blr2848 probable sulphate transport protein YP_902931.1 KEGG: gme:Gmet_3024 hypothetical protein YP_902932.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gsu:GSU3062 radical SAM domain protein YP_902933.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_902934.1 PFAM: cell division protein FtsA; KEGG: gme:Gmet_0416 cell division protein FtsA YP_902935.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: gsu:GSU3065 cell division protein FtsQ YP_902936.1 KEGG: gme:Gmet_0415 D-alanine--D-alanine ligase; TIGRFAM: D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein YP_902937.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_902938.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_902939.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_902940.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: gme:Gmet_0411 cell cycle protein YP_902941.1 TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: gme:Gmet_0410 UDP-N-acetylmuramoylalanine-D-glutamate ligase YP_902942.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_902943.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: gme:Gmet_0408 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D -alanyl ligase YP_902944.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_902945.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PASTA domain containing protein; KEGG: gsu:GSU3075 penicillin-binding protein YP_902946.1 PFAM: Septum formation initiator; cell division protein FtsL; KEGG: gsu:GSU3076 cell division protein FtsL, putative YP_902947.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: gme:Gmet_0404 methyltransferase YP_902948.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_902949.1 KEGG: gsu:GSU3079 hypothetical protein YP_902950.1 KEGG: gsu:GSU3080 hypothetical protein YP_902951.1 PFAM: protein of unknown function DUF164; KEGG: gme:Gmet_0400 protein of unknown function DUF164 YP_902952.1 PFAM: protein of unknown function DUF34; KEGG: gsu:GSU3085 conserved hypothetical protein TIGR00486 YP_902953.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_902954.1 PFAM: GTP cyclohydrolase I; KEGG: stl:stu0828 hypothetical protein YP_902955.1 KEGG: gsu:GSU1193 ketose-bisphosphate aldolase family protein YP_902956.1 PFAM: CBS domain containing protein; phosphoesterase, RecJ domain protein; Polynucleotide adenylyltransferase region; phosphoesterase, DHHA1; KEGG: gsu:GSU1581 polyA polymerase family protein YP_902957.1 TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: yps:YPTB3765 transcription elongation factor YP_902958.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: gsu:GSU0207 cold-shock domain family protein YP_902959.1 PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_2524 ABC transporter-related protein YP_902960.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_902961.1 PFAM: metallophosphoesterase; KEGG: gsu:GSU1138 Ser/Thr protein phosphatase family protein YP_902962.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP YP_902963.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: gsu:GSU1136 5-formyltetrahydrofolate cyclo-ligase family protein YP_902965.1 KEGG: gme:Gmet_1178 hypothetical protein YP_902966.1 KEGG: gme:Gmet_1177 hypothetical protein YP_902967.1 KEGG: gsu:GSU1132 cell division protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase YP_902968.1 KEGG: gsu:GSU1131 hypothetical protein YP_902969.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: gme:Gmet_1174 chromosome segregation protein SMC YP_902970.1 PFAM: beta-lactamase domain protein; KEGG: gme:Gmet_3123 beta-lactamase-like YP_902971.1 PFAM: small multidrug resistance protein; KEGG: bpe:BP2476 putative mebrane transport protein YP_902972.1 PFAM: OmpA/MotB domain protein; KEGG: gsu:GSU0024 OmpA domain protein YP_902973.1 PFAM: TolB, N-terminal domain protein; WD40 domain protein beta Propeller; KEGG: gme:Gmet_3540 WD40-like beta propeller YP_902974.1 TIGRFAM: TonB family protein; KEGG: gme:Gmet_3539 TonB-like YP_902975.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: gme:Gmet_3538 biopolymer transport protein ExbD/TolR YP_902976.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: gsu:GSU0028 TolQ protein YP_902977.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: gme:Gmet_3536 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_902978.1 KEGG: gme:Gmet_3070 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_902979.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gme:Gmet_2403 tetratricopeptide TPR_4 YP_902980.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cch:Cag_0301 TPR repeat YP_902981.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gsu:GSU2601 TPR domain/SEC-C motif domain protein YP_902982.1 PFAM: flagellin domain protein; KEGG: rru:Rru_A2858 flagellin-like YP_902984.1 PFAM: flagellar FlbT family protein; KEGG: bja:blr5847 putative flagellar protein FlbT YP_902985.1 acts as an activator of flagellin translation and may be required for filament secretion or assembly; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum YP_902986.1 PFAM: glycosyl transferase, family 2; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cac:CAC2347 glycosyltransferase YP_902987.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gme:Gmet_3216 TPR repeat protein YP_902988.1 PFAM: glycosyl transferase, family 2; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mma:MM1141 glycosyltransferase YP_902989.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pca:Pcar_1125 hypothetical protein YP_902990.1 KEGG: spt:SPA2017 putative glycosyl transferase YP_902991.1 PFAM: Radical SAM domain protein; KEGG: mfa:Mfla_0560 molybdenum cofactor synthesis-like protein YP_902992.1 PFAM: Radical SAM domain protein; KEGG: pca:Pcar_1124 Fe-S oxidoreductases-like YP_902993.1 TIGRFAM: methyltransferase FkbM family; KEGG: pca:Pcar_1127 hypothetical protein YP_902994.1 PFAM: glycosyl transferase, group 1; KEGG: pca:Pcar_1123 glycosyltransferase-like YP_902995.1 PFAM: Radical SAM domain protein; KEGG: pca:Pcar_1124 Fe-S oxidoreductases-like YP_902996.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: pca:Pcar_1128 nucleoside-diphosphate-sugar epimerases-like YP_902997.1 KEGG: pca:Pcar_1129 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related YP_902998.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: pca:Pcar_1130 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis-like YP_902999.1 TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility C-terminal domain; KEGG: tbd:Tbd_1880 CDP-glucose 4,6-dehydratase YP_903000.1 TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pca:Pcar_1132 glucose-1-phosphate cytidylyltransferase YP_903001.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: gme:Gmet_3158 two component, sigma54 specific, transcriptional regulator, fis family YP_903002.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: gme:Gmet_3157 histidine kinase YP_903003.1 PFAM: surface antigen (D15); KEGG: gme:Gmet_3162 surface antigen (D15) YP_903004.1 PFAM: Smr protein/MutS2; KEGG: gme:Gmet_2552 Smr protein/MutS2-like YP_903005.1 PFAM: OmpA/MotB domain protein; KEGG: gme:Gmet_2553 OmpA/MotB YP_903006.1 PFAM: transposase, IS4 family protein; KEGG: bha:BH0691 transposase (15) YP_903007.1 PFAM: response regulator receiver; KEGG: gme:Gmet_1747 response regulator receiver domain protein (CheY-like) YP_903009.1 TIGRFAM: cysteine synthases; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: gme:Gmet_0264 cysteine synthase K/M YP_903010.1 TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: reu:Reut_A1327 benzoate-CoA ligase family YP_903012.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bmb:BruAb2_0614 response regulator/GGDEF domain protein YP_903013.1 PFAM: sigma-54 factor, interaction domain-containing protein; SMART: AAA ATPase; KEGG: gsu:GSU3031 sigma-54 dependent transcriptional regulator YP_903014.1 PFAM: amidohydrolase 2; KEGG: gme:Gmet_0087 amidohydrolase 2 YP_903015.1 PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: pca:Pcar_2776 2-acyl-glycerophospho-ethanolamine acyltransferase YP_903016.1 PFAM: glutaredoxin; KEGG: gme:Gmet_2959 glutaredoxin-like protein, YruB YP_903017.1 KEGG: ade:Adeh_3999 hypothetical protein YP_903018.1 member of the NlpC/P60 superfamily of peptidases YP_903019.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mca:MCA0456 GGDEF family protein YP_903020.1 KEGG: gme:Gmet_0084 hypothetical protein YP_903021.1 PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: gsu:GSU1329 tRNA synthetase class I (E and Q), catalytic domain protein YP_903022.1 PFAM: protein of unknown function DUF1255; KEGG: gsu:GSU1328 hypothetical protein YP_903023.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; HDOD; KEGG: pca:Pcar_1225 FOG: GGDEF domain-like YP_903024.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: gsu:GSU3286 uroporphyrinogen III synthase/methyltransferase YP_903025.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_903026.1 PFAM: sugar fermentation stimulation protein; KEGG: gme:Gmet_1127 sugar fermentation stimulation protein YP_903027.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_903028.1 PFAM: cytochrome c assembly protein; KEGG: gme:Gmet_3232 cytochrome c assembly protein YP_903029.1 TIGRFAM: siroheme synthase; KEGG: gsu:GSU3282 siroheme synthase, N-terminal domain protein YP_903030.1 TIGRFAM: thioredoxin; PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: gme:Gmet_3230 thioredoxin YP_903031.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: gsu:GSU3280 thioredoxin-related protein YP_903032.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_903033.1 PFAM: Hsp33 protein; KEGG: gsu:GSU3348 chaperonin, 33 kDa family YP_903034.1 KEGG: gme:Gmet_1341 hypothetical protein YP_903035.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pca:Pcar_1536 capsular polysaccharide biosynthesis protein YP_903036.1 KEGG: mhu:Mhun_2722 hypothetical protein YP_903037.1 PFAM: DNA polymerase, beta domain protein region; KEGG: mhu:Mhun_2721 DNA polymerase, beta-like region YP_903038.1 PFAM: sugar transferase; KEGG: gme:Gmet_1337 sugar transferase YP_903039.1 PFAM: glycosyl transferase, family 2; KEGG: cps:CPS_5020 glycosyl transferase, group 2 family protein YP_903040.1 KEGG: lip:LIA017 Fe-S oxidoreductase; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_903041.1 PFAM: glycosyl transferase, family 9; KEGG: gme:Gmet_2345 lipopolysaccharide heptosyltransferase II YP_903042.1 PFAM: glycosyl transferase, family 2; KEGG: gka:GK3313 glycosyltransferase YP_903043.1 PFAM: glycosyl transferase, family 2; KEGG: mma:MM1141 glycosyltransferase YP_903045.1 PFAM: glycosyl transferase, group 1; KEGG: sma:SAV6534 transferase YP_903047.1 PFAM: Methyltransferase type 11; Methyltransferase type 12 YP_903051.1 PFAM: polysaccharide biosynthesis protein; KEGG: ana:all4430 probable polysaccharide biosynthesis protein YP_903052.1 PFAM: lipopolysaccharide biosynthesis; KEGG: gme:Gmet_2183 lipopolysaccharide biosynthesis YP_903053.1 PFAM: polysaccharide export protein; KEGG: gme:Gmet_2184 polysaccharide export protein YP_903054.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: gsu:GSU1815 NAD-dependent epimerase/dehydratase family protein YP_903055.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: gme:Gmet_1488 GDP-mannose 4,6-dehydratase YP_903056.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: sat:SYN_01112 UDP-N-acetylglucosamine 4-epimerase YP_903058.1 PFAM: transposase, IS4 family protein; KEGG: eba:p2A202 transposase YP_903059.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: gme:Gmet_1645 chlorohydrolase, Atz/Trz family YP_903060.1 KEGG: ret:RHE_PC00094 probable serine/threonine kinase protein with two-component sensor domain; TIGRFAM: PAS sensor protein; PFAM: protein kinase; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein; serine/threonine protein kinase YP_903061.1 KEGG: gsu:GSU1898 hypothetical protein YP_903062.1 KEGG: gsu:GSU2466 hypothetical protein YP_903063.1 PFAM: beta-lactamase domain protein; KEGG: gsu:GSU2465 metallo-beta-lactamase family protein YP_903064.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_903065.1 KEGG: gsu:GSU0371 carbohydrate phosphorylase family protein; TIGRFAM: alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35 YP_903066.1 KEGG: nmu:Nmul_A1342 hypothetical protein YP_903067.1 KEGG: gme:Gmet_3161 FlhB domain protein, putative YP_903068.1 PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: gme:Gmet_0135 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domains I, II, & III YP_903069.1 PFAM: response regulator receiver; KEGG: gsu:GSU0403 chemotaxis protein CheY YP_903070.1 KEGG: gsu:GSU0404 hypothetical protein YP_903071.1 KEGG: gme:Gmet_3117 response regulator receiver domain protein (CheY-like) YP_903072.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gme:Gmet_3116 tetratricopeptide TPR_4 YP_903073.1 TIGRFAM: flagellar basal-body rod protein FlgB; KEGG: gsu:GSU0407 flagellar basal-body rod protein FlgB YP_903074.1 TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: gme:Gmet_3114 flagellar basal-body rod protein FlgC YP_903075.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: gsu:GSU0409 flagellar hook-basal body complex protein FliE YP_903076.1 TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring C-terminal domain protein; KEGG: gsu:GSU0410 flagellar M-ring protein FliF YP_903077.1 PFAM: flagellar motor switch protein FliG; KEGG: gsu:GSU0411 flagellar motor switch protein FliG YP_903078.1 KEGG: gsu:GSU0412 flagellar assembly protein fliH, putative YP_903079.1 KEGG: gme:Gmet_3109 ATPase FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; SMART: AAA ATPase YP_903080.1 TIGRFAM: flagellar export protein FliJ; KEGG: gsu:GSU0414 flagellar protein FliJ, putative YP_903081.1 KEGG: gsu:GSU0415 hypothetical protein YP_903082.1 PFAM: flagellar hook-length control protein; KEGG: gme:Gmet_3106 flagellar hook-length control protein YP_903083.1 PFAM: flagellar hook capping protein; KEGG: gme:Gmet_3105 flagellar hook capping protein YP_903084.1 TIGRFAM: flagellar operon protein; KEGG: gme:Gmet_3104 hypothetical protein YP_903085.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: bsu:BG10249 flagellar hook protein YP_903086.1 PFAM: flagellar basal body-associated protein FliL; KEGG: gsu:GSU0420 flagellar protein FliL YP_903087.1 PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: gsu:GSU0421 flagellar motor switch protein FliM YP_903088.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: gsu:GSU0422 flagellar motor switch protein FliN YP_903089.1 KEGG: gme:Gmet_3098 hypothetical protein YP_903090.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_903091.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: gme:Gmet_3096 flagellar biosynthesis protein FliQ YP_903092.1 TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: gsu:GSU0425 flagellar biosynthesis protein FliR YP_903093.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export YP_903094.1 membrane protein involved in the flagellar export apparatus YP_903095.1 PFAM: GTP-binding signal recognition particle SRP54, G- domain; SMART: AAA ATPase; KEGG: gme:Gmet_0427 GTP-binding signal recognition particle SRP54, G-domain YP_903096.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: gsu:GSU3054 ParA family protein YP_903097.1 TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: gsu:GSU3053 RNA polymerase sigma factor for flagellar operon YP_903098.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: gsu:GSU3052 flagellar basal-body rod protein FlgG YP_903099.1 makes up the distal portion of the flagellar basal body rod YP_903100.1 PFAM: SAF domain; KEGG: gme:Gmet_0432 flageller protein FlgA YP_903101.1 PFAM: flagellar L-ring protein; KEGG: gme:Gmet_0433 flagellar L-ring protein YP_903102.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum YP_903103.1 KEGG: gsu:GSU3046 flagellar protein FlgJ-like protein YP_903105.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: gme:Gmet_0438 flagellar hook-associated protein YP_903106.1 TIGRFAM: flagellar hook-associated protein 3; KEGG: gsu:GSU3042 flagellar hook-associated protein FlgL YP_903107.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mac:MA3114 acetyltransferase (GNAT) family protein YP_903108.1 PFAM: UvrD/REP helicase; KEGG: gme:Gmet_0089 UvrD/REP helicase YP_903109.1 PFAM: response regulator receiver; ANTAR domain protein; KEGG: gme:Gmet_0660 response regulator receiver (CheY-like) and ANTAR domain protein YP_903110.1 PFAM: transcriptional activator domain; KEGG: neu:NE1994 TPR repeat YP_903111.1 PFAM: response regulator receiver; KEGG: ade:Adeh_4317 response regulator receiver domain protein (CheY-like) YP_903112.1 KEGG: gme:Gmet_0680 ADP-ribosylation/crystallin J1; TIGRFAM: ADP-ribosyl-[dinitrogen reductase] hydrolase; PFAM: ADP-ribosylation/Crystallin J1 YP_903113.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gsu:GSU2799 radical SAM domain protein YP_903114.1 PFAM: GCN5-related N-acetyltransferase; KEGG: gme:Gmet_0682 GCN5-related N-acetyltransferase YP_903115.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: gsu:GSU0756 methyl-accepting chemotaxis protein YP_903116.1 in Methanococcus jannaschii this protein catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate; functions in alphaketosuberate synthesis which is a precursor in coenzyme B and biotin synthesis YP_903117.1 KEGG: gme:Gmet_0662 nitrogenase iron protein; TIGRFAM: nitrogenase iron protein; PFAM: NifH/frxC-family protein YP_903118.1 KEGG: gsu:GSU2820 nitrogenase molybdenum-iron protein, alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase, component 1 YP_903119.1 KEGG: gsu:GSU2819 nitrogenase molybdenum-iron protein, beta subunit; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase, component 1 YP_903120.1 PFAM: OmpA/MotB domain protein; KEGG: gsu:GSU3028 chemotaxis MotB protein YP_903121.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: gsu:GSU3027 chemotaxis MotA protein YP_903122.1 PFAM: flagellar FlbD family protein; KEGG: gme:Gmet_0462 flagellar protein YP_903123.1 KEGG: gme:Gmet_2733 cobyrinic acid a,c-diamide synthase family protein YP_903124.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: pfl:PFL_5851 thiamine biosynthesis protein ThiS YP_903125.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_903126.1 KEGG: gme:Gmet_2935 thiamine monophosphate synthase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_903127.1 KEGG: gsu:GSU0586 radical SAM protein, TIGR01212 family; TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_903128.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: gsu:GSU1891 response regulator YP_903129.1 PFAM: transposase, IS4 family protein; KEGG: eba:p2A202 transposase YP_903130.1 PFAM: response regulator receiver; KEGG: gsu:GSU1891 response regulator YP_903131.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: bxe:Bxe_A4347 two component transcriptional regulator, LuxR family YP_903132.1 KEGG: sat:SYN_01954 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_903133.1 PFAM: AMP-dependent synthetase and ligase; KEGG: gme:Gmet_1469 AMP-dependent synthetase and ligase YP_903134.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_903135.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_903136.1 PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: gsu:GSU1613 A/G-specific adenine glycosylase, putative YP_903137.1 PFAM: Dinitrogenase reductase ADP-ribosyltransferase; KEGG: gme:Gmet_0674 NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase YP_903138.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: gme:Gmet_0673 dinitrogenase iron-molybdenum cofactor biosynthesis YP_903139.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: gme:Gmet_0672 4Fe-4S ferredoxin, iron-sulfur binding protein YP_903140.1 TIGRFAM: nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: gme:Gmet_0671 dinitrogenase iron-molybdenum cofactor biosynthesis YP_903141.1 in some organisms the NifE and NifN proteins are encoded separately; functions in assembly of FeMo cofactor; functions in assembly of nitrogenase MoFe YP_903142.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: gme:Gmet_0782 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) YP_903143.1 KEGG: gme:Gmet_0781 extracellular solute-binding protein, family 1 YP_903144.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; KEGG: gme:Gmet_0782 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) YP_903145.1 PFAM: Rhomboid family protein; KEGG: gme:Gmet_2506 rhomboid-like protein YP_903146.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rubredoxin-type Fe(Cys)4 protein; FAD dependent oxidoreductase; KEGG: pca:Pcar_2460 NADH dehydrogenase YP_903147.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer YP_903148.1 KEGG: chy:CHY_0218 doubled CXXCH domain protein YP_903149.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs YP_903150.1 KEGG: gme:Gmet_2783 homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold YP_903151.1 KEGG: gsu:GSU3314 lipoprotein, putative YP_903152.1 TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: gme:Gmet_0482 precorrin-2 C20-methyltransferase YP_903153.1 TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Methyltransferase type 12; KEGG: gsu:GSU2996 precorrin-6y c5,15-methyltransferase YP_903154.1 PFAM: transposase, IS4 family protein; KEGG: eba:p2A202 transposase YP_903155.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dsy:DSY3407 hypothetical protein YP_903156.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: gsu:GSU0500 GTP-binding protein TypA YP_903157.1 PFAM: CoA-binding domain protein; KEGG: gsu:GSU1614 CoA-binding protein YP_903158.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_903159.1 KEGG: gme:Gmet_0335 cytochrome c3 YP_903161.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_903162.1 PFAM: AMMECR1 domain protein; KEGG: gsu:GSU1107 conserved hypothetical protein TIGR00296 YP_903163.1 KEGG: gsu:GSU3456 polypeptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_903164.1 PFAM: amino acid-binding ACT domain protein; KEGG: gme:Gmet_3554 amino acid-binding ACT YP_903165.1 KEGG: gsu:GSU3325 excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_903166.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: pca:Pcar_1604 NADH:ubiquinone oxidoreductase subunit YP_903167.1 KEGG: pca:Pcar_1635 NADP-reducing hydrogenase, subunit B YP_903168.1 PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: pca:Pcar_1602 NADH:ubiquinone oxidoreductase 24 kD subunit-like YP_903169.1 KEGG: gsu:GSU0780 formate dehydrogenase accessory protein FdhD YP_903170.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: chy:CHY_0733 NAD-dependent formate dehydrogenase, alpha subunit, selenocysteine-containing YP_903171.1 TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52, hydrogen uptake protein; KEGG: mja:MJ0631 hydrogenase maturation protease (HycI) YP_903172.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tko:TK2093 NADH-plastoquinone oxidoreductase subunit YP_903173.1 PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: chy:CHY_1831 carbon monoxide-induced hydrogenase, CooK subunit YP_903174.1 PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; KEGG: tte:TTE0127 NADH:ubiquinone oxidoreductase 49 kD subunit 7 YP_903175.1 PFAM: NADH dehydrogenase (ubiquinone), 30 kDa subunit; KEGG: rru:Rru_A0316 NADH-ubiquinone oxidoreductase YP_903176.1 TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: dvu:DVU0432 Ech hydrogenase, subunit EchC, putative YP_903178.1 PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: pfu:PF1448 putative multicomponent Na+:H+ antiporter subunit C YP_903180.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: pab:PAB1888 CO-induced hydrogenase related, subunit M YP_903181.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: mbu:Mbur_0132 NADH dehydrogenase (quinone) YP_903182.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: bcz:BCZK4992 NADH dehydrogenase I, subunit L (NADH-quinone oxidoreductase, chain L) YP_903183.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_903184.1 PFAM: transposase, IS4 family protein; KEGG: eba:p2A202 transposase YP_903185.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_903186.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_903187.1 PFAM: GAF domain protein; chemotaxis sensory transducer; KEGG: gsu:GSU1704 methyl-accepting chemotaxis protein, putative YP_903188.1 PFAM: type IV pilus assembly PilZ; KEGG: gsu:GSU1192 hypothetical protein YP_903189.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA YP_903190.1 KEGG: gsu:GSU3144 hypothetical protein YP_903191.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: eca:ECA1592 putative acetyl-hydrolase YP_903192.1 PFAM: protein of unknown function DUF445; KEGG: gme:Gmet_0227 protein of unknown function DUF445 YP_903194.1 PFAM: protein of unknown function DUF188; KEGG: gme:Gmet_1725 protein of unknown function DUF188 YP_903196.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU1215 transport ATP-binding protein CydD YP_903197.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_2633 ABC transporter-related protein YP_903198.1 PFAM: Class I peptide chain release factor; KEGG: gsu:GSU0971 peptidyl-tRNA hydrolase domain protein YP_903199.1 KEGG: hch:HCH_00790 predicted phosphohydrolase (DHH superfamily) YP_903200.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_2630 ABC transporter-related protein YP_903202.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: hch:HCH_06854 Kef-type K+ transport system, predicted NAD-binding component YP_903203.1 KEGG: gsu:GSU0824 hypothetical protein YP_903206.1 KEGG: cps:CPS_2373 hypothetical protein YP_903212.1 KEGG: xoo:XOO4227 putative transposase YP_903213.1 KEGG: ade:Adeh_1839 hypothetical protein YP_903214.1 PFAM: phage integrase family protein; KEGG: pca:Pcar_0810 site-specific recombinase XerD-like YP_903215.1 PFAM: import inner membrane translocase, subunit Tim44; KEGG: gme:Gmet_1927 import inner membrane translocase, subunit Tim44 YP_903216.1 PFAM: protein of unknown function UPF0182; KEGG: gsu:GSU2333 hypothetical protein YP_903217.1 PFAM: Integral membrane protein TerC; KEGG: gsu:GSU1570 membrane protein, TerC family YP_903218.1 PFAM: peptidase M48, Ste24p; KEGG: gsu:GSU1567 peptidase, M48 family YP_903220.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: aba:Acid345_0895 NAD-dependent epimerase/dehydratase YP_903221.1 KEGG: mma:MM2275 hypothetical sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_903222.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_903224.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: gme:Gmet_0761 4Fe-4S ferredoxin, iron-sulfur binding protein YP_903225.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_903226.1 KEGG: pca:Pcar_2610 HD superfamily hydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region YP_903227.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gme:Gmet_3391 hypothetical protein YP_903228.1 PFAM: MCP methyltransferase, CheR-type; Methyltransferase type 11; KEGG: gme:Gmet_3271 MCP methyltransferase, CheR-type YP_903229.1 TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: plt:Plut_1208 ADP-L-glycero-D-manno-heptose-6-epimerase YP_903230.1 PFAM: methyladenine glycosylase; KEGG: mca:MCA0358 DNA-3-methyladenine glycosylase I YP_903231.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_903232.1 KEGG: gme:Gmet_3133 bacitracin resistance protein BacA; TIGRFAM: putative undecaprenol kinase; PFAM: Bacitracin resistance protein BacA YP_903233.1 PFAM: protein of unknown function DUF47; KEGG: gme:Gmet_3132 protein of unknown function DUF47 YP_903234.1 PFAM: phosphate transporter; KEGG: gsu:GSU0389 phosphate transporter, putative YP_903235.1 KEGG: gsu:GSU0390 hypothetical protein YP_903236.1 KEGG: gme:Gmet_3223 UvrD/REP helicase YP_903237.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: gme:Gmet_3548 PpiC-type peptidyl-prolyl cis-trans isomerase YP_903238.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: gme:Gmet_3549 PpiC-type peptidyl-prolyl cis-trans isomerase YP_903239.1 KEGG: gme:Gmet_0762 response regulator receiver domain protein (CheY-like) YP_903240.1 TIGRFAM: cytidyltransferase-related domain; rfaE bifunctional protein; PFAM: cytidylyltransferase; PfkB domain protein; KEGG: gme:Gmet_0922 RfaE bifunctional protein, domains I & II YP_903241.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate YP_903242.1 PFAM: glycosyl transferase, family 2; KEGG: gme:Gmet_0919 glycosyl transferase, family 2 YP_903243.1 TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: gsu:GSU2089 rod shape-determining protein MreB YP_903244.1 KEGG: gme:Gmet_1218 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein YP_903245.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_903246.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_903247.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: gme:Gmet_0367 cell divisionFtsK/SpoIIIE YP_903248.1 KEGG: sat:SYN_02692 hypothetical cytosolic protein YP_903249.1 KEGG: sat:SYN_02693 acetyltransferase YP_903250.1 PFAM: transposase, IS4 family protein; KEGG: eba:p2A202 transposase YP_903251.1 KEGG: sat:SYN_02693 acetyltransferase YP_903252.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_903253.1 KEGG: gme:Gmet_2687 hypothetical protein YP_903254.1 KEGG: gme:Gmet_0121 cytochrome c family protein, putative YP_903255.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: gme:Gmet_3236 TatD-related deoxyribonuclease:amidohydrolase 2 YP_903256.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: gme:Gmet_3078 phospholipase D/transphosphatidylase YP_903257.1 KEGG: gme:Gmet_1206 formamidopyrimidine-DNA glycolase:zinc finger, Fpg-type; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycolase YP_903258.1 PFAM: protein of unknown function DUF559; KEGG: gsu:GSU1369 hypothetical protein YP_903260.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_903261.1 PFAM: protein of unknown function DUF163; KEGG: gsu:GSU3208 hypothetical protein YP_903262.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: gsu:GSU3209 iojap-related protein YP_903263.1 KEGG: gsu:GSU3210 nicotinate (nicotinamide) nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase YP_903264.1 PFAM: General secretory system II, protein E domain protein; KEGG: gsu:GSU0314 general secretion protein E N-terminal domain protein YP_903265.1 PFAM: glycosyl transferase, family 2; KEGG: gme:Gmet_0885 glycosyl transferase, family 2 YP_903266.1 PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: gme:Gmet_3389 3'-5' exonuclease YP_903267.1 PFAM: Radical SAM domain protein; KEGG: gsu:GSU0442 radical SAM domain protein YP_903268.1 KEGG: gme:Gmet_3557 lipoprotein, putative YP_903269.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; Methyltransferase type 12; KEGG: gme:Gmet_3558 glucose inhibited division protein YP_903270.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_903271.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_903272.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: gme:Gmet_3561 60 kDa inner membrane insertion protein YP_903273.1 PFAM: protein of unknown function DUF37; KEGG: ade:Adeh_4359 protein of unknown function DUF37 YP_903274.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: ade:Adeh_4360 ribonuclease P protein component YP_903275.1 in Escherichia coli transcription of this gene is enhanced by polyamines