-- dump date 20120504_154746 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_002729729.1 225685374 7670506 113..892 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 892 7670506 PERMA_A0001 Persephonella marina EX-H1 hypothetical protein YP_002729729.1 113 D 123214 CDS YP_002729730.1 225685384 7670473 972..2924 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 2924 7670473 PERMA_A0002 Persephonella marina EX-H1 hypothetical protein YP_002729730.1 972 D 123214 CDS YP_002729731.1 225685372 7670483 2911..3087 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 3087 7670483 PERMA_A0003 Persephonella marina EX-H1 hypothetical protein YP_002729731.1 2911 D 123214 CDS YP_002729732.1 225685376 7670471 3084..3803 1 NC_012439.1 identified by match to protein family HMM PF03692; hypothetical protein 3803 7670471 PERMA_A0005 Persephonella marina EX-H1 hypothetical protein YP_002729732.1 3084 D 123214 CDS YP_002729733.1 225685377 7670475 complement(3787..4362) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 4362 7670475 PERMA_A0004 Persephonella marina EX-H1 hypothetical protein YP_002729733.1 3787 R 123214 CDS YP_002729734.1 225685404 7670476 complement(4349..4894) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 4894 7670476 PERMA_A0006 Persephonella marina EX-H1 hypothetical protein YP_002729734.1 4349 R 123214 CDS YP_002729735.1 225685368 7670502 complement(4940..5056) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 5056 7670502 PERMA_A0007 Persephonella marina EX-H1 hypothetical protein YP_002729735.1 4940 R 123214 CDS YP_002729736.1 225685342 7670467 complement(5151..5720) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 5720 7670467 PERMA_A0008 Persephonella marina EX-H1 hypothetical protein YP_002729736.1 5151 R 123214 CDS YP_002729737.1 225685351 7670441 complement(5879..6067) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 6067 7670441 PERMA_A0009 Persephonella marina EX-H1 hypothetical protein YP_002729737.1 5879 R 123214 CDS YP_002729738.1 225685360 7670450 complement(6064..6372) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 6372 7670450 PERMA_A0010 Persephonella marina EX-H1 hypothetical protein YP_002729738.1 6064 R 123214 CDS YP_002729739.1 225685357 7670459 complement(6369..7094) 1 NC_012439.1 DNA replication protein DnaC 7094 7670459 PERMA_A0011 Persephonella marina EX-H1 DNA replication protein DnaC YP_002729739.1 6369 R 123214 CDS YP_002729740.1 225685340 7670456 complement(7112..8011) 1 NC_012439.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899; similar to protein aq_aa09; putative integrase/recombinase 8011 7670456 PERMA_A0012 Persephonella marina EX-H1 putative integrase/recombinase YP_002729740.1 7112 R 123214 CDS YP_002729741.1 225685350 7670439 complement(8008..8484) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 8484 7670439 PERMA_A0013 Persephonella marina EX-H1 hypothetical protein YP_002729741.1 8008 R 123214 CDS YP_002729742.1 225685341 7670449 complement(8497..9612) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 9612 7670449 PERMA_A0014 Persephonella marina EX-H1 hypothetical protein YP_002729742.1 8497 R 123214 CDS YP_002729743.1 225685406 7670440 complement(9609..9824) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 9824 7670440 PERMA_A0015 Persephonella marina EX-H1 hypothetical protein YP_002729743.1 9609 R 123214 CDS YP_002729744.1 225685345 7670504 complement(9817..10356) 1 NC_012439.1 hypothetical protein 10356 7670504 PERMA_A0016 Persephonella marina EX-H1 hypothetical protein YP_002729744.1 9817 R 123214 CDS YP_002729745.1 225685346 7670444 complement(10457..10873) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 10873 7670444 PERMA_A0017 Persephonella marina EX-H1 hypothetical protein YP_002729745.1 10457 R 123214 CDS YP_002729746.1 225685352 7670445 complement(10885..11199) 1 NC_012439.1 putative IQ calmodulin-binding motif family protein 11199 7670445 PERMA_A0018 Persephonella marina EX-H1 putative IQ calmodulin-binding motif family protein YP_002729746.1 10885 R 123214 CDS YP_002729747.1 225685356 7670451 complement(11386..13944) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 13944 7670451 PERMA_A0019 Persephonella marina EX-H1 hypothetical protein YP_002729747.1 11386 R 123214 CDS YP_002729748.1 225685349 7670455 complement(13923..14813) 1 NC_012439.1 putative lipoprotein 14813 7670455 PERMA_A0020 Persephonella marina EX-H1 putative lipoprotein YP_002729748.1 13923 R 123214 CDS YP_002729749.1 225685358 7670448 complement(14776..15339) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 15339 7670448 PERMA_A0021 Persephonella marina EX-H1 hypothetical protein YP_002729749.1 14776 R 123214 CDS YP_002729750.1 225685390 7670457 complement(15327..16043) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 16043 7670457 PERMA_A0022 Persephonella marina EX-H1 hypothetical protein YP_002729750.1 15327 R 123214 CDS YP_002729751.1 225685401 7670489 complement(16016..16990) 1 NC_012439.1 putative TraU 16990 7670489 PERMA_A0023 Persephonella marina EX-H1 putative TraU YP_002729751.1 16016 R 123214 CDS YP_002729752.1 225685344 7670499 complement(16974..17585) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 17585 7670499 PERMA_A0024 Persephonella marina EX-H1 hypothetical protein YP_002729752.1 16974 R 123214 CDS YP_002729753.1 225685402 7670443 17722..17928 1 NC_012439.1 DNA-damage-inducible protein J 17928 7670443 PERMA_A0025 Persephonella marina EX-H1 DNA-damage-inducible protein J YP_002729753.1 17722 D 123214 CDS YP_002729754.1 225685391 7670500 17925..18545 1 NC_012439.1 putative lipoprotein 18545 7670500 PERMA_A0026 Persephonella marina EX-H1 putative lipoprotein YP_002729754.1 17925 D 123214 CDS YP_002729755.1 225685363 7670490 18551..19297 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 19297 7670490 PERMA_A0027 Persephonella marina EX-H1 hypothetical protein YP_002729755.1 18551 D 123214 CDS YP_002729756.1 225685353 7670462 complement(19300..19581) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 19581 7670462 PERMA_A0028 Persephonella marina EX-H1 hypothetical protein YP_002729756.1 19300 R 123214 CDS YP_002729757.1 225685362 7670452 complement(19578..19877) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 19877 7670452 PERMA_A0029 Persephonella marina EX-H1 hypothetical protein YP_002729757.1 19578 R 123214 CDS YP_002729758.1 225685343 7670461 complement(19879..20268) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 20268 7670461 PERMA_A0030 Persephonella marina EX-H1 hypothetical protein YP_002729758.1 19879 R 123214 CDS YP_002729759.1 225685392 7670442 complement(20265..23756) 1 NC_012439.1 hypothetical protein 23756 7670442 PERMA_A0031 Persephonella marina EX-H1 hypothetical protein YP_002729759.1 20265 R 123214 CDS YP_002729760.1 225685378 7670491 complement(23761..25164) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 25164 7670491 PERMA_A0032 Persephonella marina EX-H1 hypothetical protein YP_002729760.1 23761 R 123214 CDS YP_002729761.1 225685395 7670477 complement(25166..26053) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 26053 7670477 PERMA_A0033 Persephonella marina EX-H1 hypothetical protein YP_002729761.1 25166 R 123214 CDS YP_002729762.1 225685399 7670493 complement(26100..26471) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 26471 7670493 PERMA_A0034 Persephonella marina EX-H1 hypothetical protein YP_002729762.1 26100 R 123214 CDS YP_002729763.1 225685396 7670497 complement(26443..27828) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 27828 7670497 PERMA_A0035 Persephonella marina EX-H1 hypothetical protein YP_002729763.1 26443 R 123214 CDS YP_002729764.1 225685381 7670494 complement(27803..28165) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 28165 7670494 PERMA_A0036 Persephonella marina EX-H1 hypothetical protein YP_002729764.1 27803 R 123214 CDS YP_002729765.1 225685407 7670480 complement(28176..30956) 1 NC_012439.1 identified by match to protein family HMM TIGR02746; type-IV secretion system protein TraC 30956 traC 7670480 traC Persephonella marina EX-H1 type-IV secretion system protein TraC YP_002729765.1 28176 R 123214 CDS YP_002729766.1 225685386 7670505 complement(30946..31461) 1 NC_012439.1 identified by match to protein family HMM PF09676; match to protein family HMM TIGR02747; type IV conjugative transfer system protein TraV 31461 traV 7670505 traV Persephonella marina EX-H1 type IV conjugative transfer system protein TraV YP_002729766.1 30946 R 123214 CDS YP_002729767.1 225685405 7670485 complement(31458..32126) 1 NC_012439.1 thiol:disulfide interchange protein 32126 7670485 PERMA_A0039 Persephonella marina EX-H1 thiol:disulfide interchange protein YP_002729767.1 31458 R 123214 CDS YP_002729768.1 225685347 7670503 complement(32116..32490) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 32490 7670503 PERMA_A0040 Persephonella marina EX-H1 hypothetical protein YP_002729768.1 32116 R 123214 CDS YP_002729769.1 225685389 7670446 complement(32502..32894) 1 NC_012439.1 putative lipoprotein 32894 7670446 PERMA_A0041 Persephonella marina EX-H1 putative lipoprotein YP_002729769.1 32502 R 123214 CDS YP_002729770.1 225685355 7670488 complement(32848..34098) 1 NC_012439.1 identified by match to protein family HMM PF06447; TraB pilus assembly family protein 34098 7670488 PERMA_A0042 Persephonella marina EX-H1 TraB pilus assembly family protein YP_002729770.1 32848 R 123214 CDS YP_002729771.1 225685370 7670454 complement(34079..34552) 1 NC_012439.1 identified by match to protein family HMM PF06347; match to protein family HMM PF08239; bacteriolytic enzyme 34552 7670454 PERMA_A0043 Persephonella marina EX-H1 bacteriolytic enzyme YP_002729771.1 34079 R 123214 CDS YP_002729772.1 225685367 7670469 complement(34549..35307) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 35307 7670469 PERMA_A0044 Persephonella marina EX-H1 hypothetical protein YP_002729772.1 34549 R 123214 CDS YP_002729773.1 225685380 7670466 complement(35294..35821) 1 NC_012439.1 identified by match to protein family HMM TIGR02761; type IV conjugative transfer system protein TraE 35821 traE 7670466 traE Persephonella marina EX-H1 type IV conjugative transfer system protein TraE YP_002729773.1 35294 R 123214 CDS YP_002729774.1 225685369 7670479 complement(35844..36140) 1 NC_012439.1 identified by match to protein family HMM TIGR02762; type IV conjugative transfer system protein TraL 36140 traL 7670479 traL Persephonella marina EX-H1 type IV conjugative transfer system protein TraL YP_002729774.1 35844 R 123214 CDS YP_002729775.1 225685398 7670468 complement(36165..36566) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 36566 7670468 PERMA_A0047 Persephonella marina EX-H1 hypothetical protein YP_002729775.1 36165 R 123214 CDS YP_002729776.1 225685339 7670496 36738..37430 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 37430 7670496 PERMA_A0048 Persephonella marina EX-H1 hypothetical protein YP_002729776.1 36738 D 123214 CDS YP_002729777.1 225685393 7670438 complement(37513..38217) 1 NC_012439.1 hypothetical protein 38217 7670438 PERMA_A0049 Persephonella marina EX-H1 hypothetical protein YP_002729777.1 37513 R 123214 CDS YP_002729778.1 225685379 7670492 complement(38374..38772) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 38772 7670492 PERMA_A0050 Persephonella marina EX-H1 hypothetical protein YP_002729778.1 38374 R 123214 CDS YP_002729779.1 225685382 7670478 complement(38777..39106) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 39106 7670478 PERMA_A0051 Persephonella marina EX-H1 hypothetical protein YP_002729779.1 38777 R 123214 CDS YP_002729780.1 225685387 7670481 complement(39148..39993) 1 NC_012439.1 identified by match to protein family HMM PF08401; antirestriction protein 39993 7670481 PERMA_A0052 Persephonella marina EX-H1 antirestriction protein YP_002729780.1 39148 R 123214 CDS YP_002729781.1 225685338 7670486 complement(40084..40929) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 40929 7670486 PERMA_A0053 Persephonella marina EX-H1 hypothetical protein YP_002729781.1 40084 R 123214 CDS YP_002729782.1 225685373 7670437 complement(40948..41088) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 41088 7670437 PERMA_A0054 Persephonella marina EX-H1 hypothetical protein YP_002729782.1 40948 R 123214 CDS YP_002729783.1 225685388 7670472 complement(41112..41246) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 41246 7670472 PERMA_A0055 Persephonella marina EX-H1 hypothetical protein YP_002729783.1 41112 R 123214 CDS YP_002729784.1 225685383 7670487 complement(41283..41594) 1 NC_012439.1 hypothetical protein 41594 7670487 PERMA_A0056 Persephonella marina EX-H1 hypothetical protein YP_002729784.1 41283 R 123214 CDS YP_002729785.1 225685361 7670482 complement(42112..42429) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 42429 7670482 PERMA_A0057 Persephonella marina EX-H1 hypothetical protein YP_002729785.1 42112 R 123214 CDS YP_002729786.1 225685354 7670460 complement(42449..42715) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 42715 7670460 PERMA_A0058 Persephonella marina EX-H1 hypothetical protein YP_002729786.1 42449 R 123214 CDS YP_002729787.1 225685385 7670453 complement(42715..45219) 1 NC_012439.1 identified by match to protein family HMM PF01131; match to protein family HMM PF01751; DNA topoisomerase 1 (DNA topoisomerase I) (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) 45219 7670453 PERMA_A0059 Persephonella marina EX-H1 DNA topoisomerase 1 (DNA topoisomerase I) (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) YP_002729787.1 42715 R 123214 CDS YP_002729788.1 225685366 7670484 complement(45315..46865) 1 NC_012439.1 identified by match to protein family HMM PF01051; putative replication initiation protein 46865 7670484 PERMA_A0060 Persephonella marina EX-H1 putative replication initiation protein YP_002729788.1 45315 R 123214 CDS YP_002729789.1 225685397 7670465 complement(47365..47637) 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 47637 7670465 PERMA_A0061 Persephonella marina EX-H1 hypothetical protein YP_002729789.1 47365 R 123214 CDS YP_002729790.1 225685400 7670495 47718..48167 1 NC_012439.1 hypothetical protein 48167 7670495 PERMA_A0062 Persephonella marina EX-H1 hypothetical protein YP_002729790.1 47718 D 123214 CDS YP_002729791.1 225685403 7670498 48169..49122 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 49122 7670498 PERMA_A0063 Persephonella marina EX-H1 hypothetical protein YP_002729791.1 48169 D 123214 CDS YP_002729792.1 225685348 7670501 49141..49797 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 49797 7670501 PERMA_A0064 Persephonella marina EX-H1 hypothetical protein YP_002729792.1 49141 D 123214 CDS YP_002729793.1 225685371 7670447 49810..50340 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 50340 7670447 PERMA_A0065 Persephonella marina EX-H1 hypothetical protein YP_002729793.1 49810 D 123214 CDS YP_002729794.1 225685365 7670470 50451..50957 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 50957 7670470 PERMA_A0066 Persephonella marina EX-H1 hypothetical protein YP_002729794.1 50451 D 123214 CDS YP_002729795.1 225685375 7670464 50944..51339 1 NC_012439.1 hypothetical protein 51339 7670464 PERMA_A0067 Persephonella marina EX-H1 hypothetical protein YP_002729795.1 50944 D 123214 CDS YP_002729796.1 225685364 7670474 51756..52598 1 NC_012439.1 hypothetical protein 52598 7670474 PERMA_A0068 Persephonella marina EX-H1 hypothetical protein YP_002729796.1 51756 D 123214 CDS YP_002729797.1 225685359 7670463 52591..52761 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 52761 7670463 PERMA_A0069 Persephonella marina EX-H1 hypothetical protein YP_002729797.1 52591 D 123214 CDS YP_002729798.1 225685394 7670458 52739..53080 1 NC_012439.1 identified by Glimmer3; putative; hypothetical protein 53080 7670458 PERMA_A0070 Persephonella marina EX-H1 hypothetical protein YP_002729798.1 52739 D 123214 CDS YP_002729799.1 225849565 7674950 complement(6..299) 1 NC_012440.1 identified by match to protein family HMM PF00166; chaperonin GroS 299 groS_1 7674950 groS_1 Persephonella marina EX-H1 chaperonin GroS YP_002729799.1 6 R 123214 CDS YP_002729800.1 225849566 7675584 complement(404..3004) 1 NC_012440.1 identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF08335; (Protein-PII) uridylyltransferase 3004 7675584 PERMA_0002 Persephonella marina EX-H1 (Protein-PII) uridylyltransferase YP_002729800.1 404 R 123214 CDS YP_002729801.1 225849567 7674543 complement(3009..4571) 1 NC_012440.1 identified by match to protein family HMM PF01119; match to protein family HMM PF02518; match to protein family HMM PF08676; match to protein family HMM TIGR00585; DNA mismatch repair protein MutL 4571 7674543 PERMA_0003 Persephonella marina EX-H1 DNA mismatch repair protein MutL YP_002729801.1 3009 R 123214 CDS YP_002729802.1 225849568 7675537 4660..4995 1 NC_012440.1 hypothetical protein 4995 7675537 PERMA_0004 Persephonella marina EX-H1 hypothetical protein YP_002729802.1 4660 D 123214 CDS YP_002729803.1 225849569 7675403 complement(5006..6517) 1 NC_012440.1 identified by match to protein family HMM PF01977; match to protein family HMM TIGR00148; match to protein family HMM TIGR03701; menaquinone biosynthesis decarboxylase, family 6517 7675403 PERMA_0005 Persephonella marina EX-H1 menaquinone biosynthesis decarboxylase, family YP_002729803.1 5006 R 123214 CDS YP_002729804.1 225849570 7675820 6667..6804 1 NC_012440.1 identified by Glimmer3; hypothetical protein 6804 7675820 PERMA_0006 Persephonella marina EX-H1 hypothetical protein YP_002729804.1 6667 D 123214 CDS YP_002729805.1 225849571 7674795 7012..7878 1 NC_012440.1 identified by match to protein family HMM PF02706; chain length determinant protein 7878 7674795 PERMA_0007 Persephonella marina EX-H1 chain length determinant protein YP_002729805.1 7012 D 123214 CDS YP_002729806.1 225849572 7675136 complement(7881..10199) 1 NC_012440.1 identified by match to protein family HMM PF05362; peptidase S16, lon domain protein 10199 7675136 PERMA_0008 Persephonella marina EX-H1 peptidase S16, lon domain protein YP_002729806.1 7881 R 123214 CDS YP_002729807.1 225849573 7674396 complement(10199..10585) 1 NC_012440.1 hypothetical protein 10585 7674396 PERMA_0009 Persephonella marina EX-H1 hypothetical protein YP_002729807.1 10199 R 123214 CDS YP_002729808.1 225849574 7675710 complement(10665..11312) 1 NC_012440.1 identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639; phosphoribosylglycinamide formyltransferase 11312 purN 7675710 purN Persephonella marina EX-H1 phosphoribosylglycinamide formyltransferase YP_002729808.1 10665 R 123214 CDS YP_002729809.1 225849575 7674743 complement(11350..13422) 1 NC_012440.1 identified by match to protein family HMM PF04784; hypothetical protein 13422 7674743 PERMA_0011 Persephonella marina EX-H1 hypothetical protein YP_002729809.1 11350 R 123214 CDS YP_002729810.1 225849576 7675190 complement(13442..14464) 1 NC_012440.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00878; phosphoribosylformylglycinamidine cyclo-ligase 14464 purM 7675190 purM Persephonella marina EX-H1 phosphoribosylformylglycinamidine cyclo-ligase YP_002729810.1 13442 R 123214 CDS YP_002729811.1 225849577 7675926 14530..15078 1 NC_012440.1 THEP1; Aquifex aeolicus protein exhibits ATPase and GTPase activity; crystal structure shows RecA-like fold; NTPase 15078 7675926 PERMA_0014 Persephonella marina EX-H1 NTPase YP_002729811.1 14530 D 123214 CDS YP_002729812.1 225849578 7675969 complement(15042..15746) 1 NC_012440.1 identified by match to protein family HMM PF00795; N-carbamoylputrescine amidase 15746 7675969 PERMA_0013 Persephonella marina EX-H1 N-carbamoylputrescine amidase YP_002729812.1 15042 R 123214 CDS YP_002729813.1 225849579 7675361 complement(15938..16336) 1 NC_012440.1 identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149; hypothetical protein 16336 7675361 PERMA_0015 Persephonella marina EX-H1 hypothetical protein YP_002729813.1 15938 R 123214 CDS YP_002729814.1 225849580 7675661 complement(16329..17015) 1 NC_012440.1 identified by match to protein family HMM PF00156; phosphoribosyltransferase 17015 7675661 PERMA_0016 Persephonella marina EX-H1 phosphoribosyltransferase YP_002729814.1 16329 R 123214 CDS YP_002729815.1 225849581 7676041 17056..17499 1 NC_012440.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 17499 dtd 7676041 dtd Persephonella marina EX-H1 D-tyrosyl-tRNA(Tyr) deacylase YP_002729815.1 17056 D 123214 CDS YP_002729816.1 225849582 7675526 complement(17485..18951) 1 NC_012440.1 identified by match to protein family HMM PF00982; alpha,alpha-trehalose-phosphate synthase [UDP-forming] (Trehalose-6-phosphate synthase) (UDP-glucose-glucosephosphateglucosyltransferase) 18951 7675526 PERMA_0017 Persephonella marina EX-H1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] (Trehalose-6-phosphate synthase) (UDP-glucose-glucosephosphateglucosyltransferase) YP_002729816.1 17485 R 123214 CDS YP_002729817.1 225849583 7674892 complement(18995..20338) 1 NC_012440.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 20338 engA 7674892 engA Persephonella marina EX-H1 GTP-binding protein EngA YP_002729817.1 18995 R 123214 CDS YP_002729818.1 225849584 7675899 20420..20854 1 NC_012440.1 identified by Glimmer3; hypothetical protein 20854 7675899 PERMA_0020 Persephonella marina EX-H1 hypothetical protein YP_002729818.1 20420 D 123214 CDS YP_002729819.1 225849585 7674889 20880..22394 1 NC_012440.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN 22394 mviN 7674889 mviN Persephonella marina EX-H1 integral membrane protein MviN YP_002729819.1 20880 D 123214 CDS YP_002729820.1 225849586 7675232 22479..23495 1 NC_012440.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 23495 7675232 PERMA_0023 Persephonella marina EX-H1 diguanylate cyclase YP_002729820.1 22479 D 123214 CDS YP_002729821.1 225849587 7675960 complement(23485..24924) 1 NC_012440.1 identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase 24924 pyk 7675960 pyk Persephonella marina EX-H1 pyruvate kinase YP_002729821.1 23485 R 123214 CDS YP_002729822.1 225849588 7674822 25030..25422 1 NC_012440.1 identified by match to protein family HMM PF01475; ferric uptake regulator, Fur family 25422 7674822 PERMA_0024 Persephonella marina EX-H1 ferric uptake regulator, Fur family YP_002729822.1 25030 D 123214 CDS YP_002729823.1 225849589 7675075 25426..26016 1 NC_012440.1 identified by match to protein family HMM PF00174; molybdopterin binding oxidoreductase 26016 7675075 PERMA_0025 Persephonella marina EX-H1 molybdopterin binding oxidoreductase YP_002729823.1 25426 D 123214 CDS YP_002729824.1 225849590 7674214 26013..27074 1 NC_012440.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; succinyl-diaminopimelate desuccinylase 27074 7674214 PERMA_0027 Persephonella marina EX-H1 succinyl-diaminopimelate desuccinylase YP_002729824.1 26013 D 123214 CDS YP_002729825.1 225849591 7674639 complement(27038..27526) 1 NC_012440.1 identified by match to protein family HMM PF00583; N-acetyltransferase, gnat family 27526 7674639 PERMA_0026 Persephonella marina EX-H1 N-acetyltransferase, gnat family YP_002729825.1 27038 R 123214 CDS YP_002729826.1 225849592 7675235 27686..29002 1 NC_012440.1 L-lysine 2,3-aminomutase 29002 7675235 PERMA_0028 Persephonella marina EX-H1 L-lysine 2,3-aminomutase YP_002729826.1 27686 D 123214 CDS YP_002729827.1 225849593 7674977 29016..30554 1 NC_012440.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 30554 guaA 7674977 guaA Persephonella marina EX-H1 GMP synthase YP_002729827.1 29016 D 123214 CDS YP_002729828.1 225849594 7674322 30554..30928 1 NC_012440.1 identified by Glimmer3; hypothetical protein 30928 7674322 PERMA_0030 Persephonella marina EX-H1 hypothetical protein YP_002729828.1 30554 D 123214 CDS YP_002729829.1 225849595 7674577 30925..31614 1 NC_012440.1 identified by match to protein family HMM PF00106; alcohol dehydrogenase 31614 7674577 PERMA_0031 Persephonella marina EX-H1 alcohol dehydrogenase YP_002729829.1 30925 D 123214 CDS YP_002729830.1 225849596 7674566 31670..31990 1 NC_012440.1 hypothetical protein 31990 7674566 PERMA_0032 Persephonella marina EX-H1 hypothetical protein YP_002729830.1 31670 D 123214 CDS YP_002729831.1 225849597 7675515 31981..32823 1 NC_012440.1 identified by match to protein family HMM PF01992; ATP synthase subunit C 32823 7675515 PERMA_0033 Persephonella marina EX-H1 ATP synthase subunit C YP_002729831.1 31981 D 123214 CDS YP_002729832.1 225849598 7675857 32826..34613 1 NC_012440.1 identified by match to protein family HMM PF01496; V-type sodium ATP synthase subunit I 34613 7675857 PERMA_0034 Persephonella marina EX-H1 V-type sodium ATP synthase subunit I YP_002729832.1 32826 D 123214 CDS YP_002729833.1 225849599 7676198 34660..34932 1 NC_012440.1 identified by match to protein family HMM PF00137; ATP synthase subunit C 34932 7676198 PERMA_0035 Persephonella marina EX-H1 ATP synthase subunit C YP_002729833.1 34660 D 123214 CDS YP_002729834.1 225849600 7674697 34929..35231 1 NC_012440.1 identified by match to protein family HMM PF01990; ATP synthase subunit F 35231 7674697 PERMA_0036 Persephonella marina EX-H1 ATP synthase subunit F YP_002729834.1 34929 D 123214 CDS YP_002729835.1 225849601 7675490 35239..35745 1 NC_012440.1 identified by Glimmer3; hypothetical protein 35745 7675490 PERMA_0037 Persephonella marina EX-H1 hypothetical protein YP_002729835.1 35239 D 123214 CDS YP_002729836.1 225849602 7674782 35749..37479 1 NC_012440.1 identified by match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; V-type ATP synthase alpha chain (V-type ATPase subunitA) 37479 7674782 PERMA_0038 Persephonella marina EX-H1 V-type ATP synthase alpha chain (V-type ATPase subunitA) YP_002729836.1 35749 D 123214 CDS YP_002729837.1 225849603 7674507 37482..38825 1 NC_012440.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B 38825 7674507 PERMA_0039 Persephonella marina EX-H1 V-type ATP synthase subunit B YP_002729837.1 37482 D 123214 CDS YP_002729838.1 225849604 7675451 38822..39439 1 NC_012440.1 identified by match to protein family HMM PF01813; match to protein family HMM TIGR00309; V-type ATPase, D subunit 39439 7675451 PERMA_0040 Persephonella marina EX-H1 V-type ATPase, D subunit YP_002729838.1 38822 D 123214 CDS YP_002729839.1 225849605 7674218 39512..41164 1 NC_012440.1 identified by match to protein family HMM PF00575; ribosomal protein S01 41164 7674218 PERMA_0041 Persephonella marina EX-H1 ribosomal protein S01 YP_002729839.1 39512 D 123214 CDS YP_002729840.1 225849606 7675180 41161..42159 1 NC_012440.1 identified by match to protein family HMM PF01699; sodium/calcium exchanger 42159 7675180 PERMA_0042 Persephonella marina EX-H1 sodium/calcium exchanger YP_002729840.1 41161 D 123214 CDS YP_002729841.1 225849607 7674749 42164..43108 1 NC_012440.1 identified by match to protein family HMM PF03255; match to protein family HMM TIGR00513; acetyl-CoA carboxylase, carboxyl transferase, alphsubunit A 43108 accA 7674749 accA Persephonella marina EX-H1 acetyl-CoA carboxylase, carboxyl transferase, alphsubunit A YP_002729841.1 42164 D 123214 CDS YP_002729842.1 225849608 7674797 43105..44103 1 NC_012440.1 identified by match to protein family HMM PF01075; ADP-heptose:LPS heptosyltransferase II 44103 7674797 PERMA_0045 Persephonella marina EX-H1 ADP-heptose:LPS heptosyltransferase II YP_002729842.1 43105 D 123214 CDS YP_002729843.1 225849609 7675056 complement(44098..44517) 1 NC_012440.1 identified by match to protein family HMM PF00571; hypothetical protein 44517 7675056 PERMA_0044 Persephonella marina EX-H1 hypothetical protein YP_002729843.1 44098 R 123214 CDS YP_002729844.1 225849610 7675822 44591..45796 1 NC_012440.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; thermostable carboxypeptidase 1 45796 7675822 PERMA_0047 Persephonella marina EX-H1 thermostable carboxypeptidase 1 YP_002729844.1 44591 D 123214 CDS YP_002729845.1 225849611 7674454 complement(45793..47067) 1 NC_012440.1 ATPase 47067 7674454 PERMA_0046 Persephonella marina EX-H1 ATPase YP_002729845.1 45793 R 123214 CDS YP_002729846.1 225849612 7674268 47453..47662 1 NC_012440.1 membrane or secreted protein 47662 7674268 PERMA_0048 Persephonella marina EX-H1 membrane or secreted protein YP_002729846.1 47453 D 123214 CDS YP_002729847.1 225849613 7675728 47734..49431 1 NC_012440.1 identified by match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409; match to protein family HMM TIGR01480; copper resistance protein A 49431 7675728 PERMA_0049 Persephonella marina EX-H1 copper resistance protein A YP_002729847.1 47734 D 123214 CDS YP_002729848.1 225849614 7675995 49444..50175 1 NC_012440.1 identified by match to protein family HMM PF05275; copper resistance protein B 50175 7675995 PERMA_0050 Persephonella marina EX-H1 copper resistance protein B YP_002729848.1 49444 D 123214 CDS YP_002729849.1 225849615 7674961 50271..50564 1 NC_012440.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 50564 rplU 7674961 rplU Persephonella marina EX-H1 50S ribosomal protein L21 YP_002729849.1 50271 D 123214 CDS YP_002729850.1 225849616 7675917 50580..50837 1 NC_012440.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 50837 rpmA 7675917 rpmA Persephonella marina EX-H1 50S ribosomal protein L27 YP_002729850.1 50580 D 123214 CDS YP_002729851.1 225849617 7674460 complement(50859..51953) 1 NC_012440.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210; rod shape-determining protein RodA 51953 mrdB 7674460 mrdB Persephonella marina EX-H1 rod shape-determining protein RodA YP_002729851.1 50859 R 123214 CDS YP_002729852.1 225849618 7675834 complement(51940..53733) 1 NC_012440.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423; penicillin-binding protein 2 53733 mrdA 7675834 mrdA Persephonella marina EX-H1 penicillin-binding protein 2 YP_002729852.1 51940 R 123214 CDS YP_002729853.1 225849619 7674837 complement(53714..54148) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 54148 7674837 PERMA_0055 Persephonella marina EX-H1 hypothetical protein YP_002729853.1 53714 R 123214 CDS YP_002729854.1 225849620 7675148 complement(54166..54981) 1 NC_012440.1 identified by match to protein family HMM PF04085; match to protein family HMM TIGR00219; rod shape-determining protein MreC 54981 mreC 7675148 mreC Persephonella marina EX-H1 rod shape-determining protein MreC YP_002729854.1 54166 R 123214 CDS YP_002729855.1 225849621 7675978 complement(54987..56027) 1 NC_012440.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 56027 7675978 PERMA_0057 Persephonella marina EX-H1 rod shape-determining protein MreB YP_002729855.1 54987 R 123214 CDS YP_002729856.1 225849622 7675414 56109..56990 1 NC_012440.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 56990 dapA 7675414 dapA Persephonella marina EX-H1 dihydrodipicolinate synthase YP_002729856.1 56109 D 123214 CDS YP_002729857.1 225849623 7676018 57112..57927 1 NC_012440.1 identified by match to protein family HMM PF01408; oxidoreductase family, NAD-binding Rossmann fold protein 57927 7676018 PERMA_0059 Persephonella marina EX-H1 oxidoreductase family, NAD-binding Rossmann fold protein YP_002729857.1 57112 D 123214 CDS YP_002729858.1 225849624 7674368 57939..58997 1 NC_012440.1 identified by match to protein family HMM PF01041; transcriptional regulator 58997 7674368 PERMA_0060 Persephonella marina EX-H1 transcriptional regulator YP_002729858.1 57939 D 123214 CDS YP_002729859.1 225849625 7674675 59041..59505 1 NC_012440.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; betsubunit A of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 59505 ribH 7674675 ribH Persephonella marina EX-H1 6,7-dimethyl-8-ribityllumazine synthase YP_002729859.1 59041 D 123214 CDS YP_002729860.1 225849626 7675455 59505..59933 1 NC_012440.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 59933 nusB 7675455 nusB Persephonella marina EX-H1 transcription antitermination protein NusB YP_002729860.1 59505 D 123214 CDS YP_002729861.1 225849627 7676174 59930..60658 1 NC_012440.1 identified by match to protein family HMM PF00149; metallophosphoesterase 60658 7676174 PERMA_0064 Persephonella marina EX-H1 metallophosphoesterase YP_002729861.1 59930 D 123214 CDS YP_002729862.1 225849628 7675344 complement(60645..60827) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 60827 7675344 PERMA_0063 Persephonella marina EX-H1 hypothetical protein YP_002729862.1 60645 R 123214 CDS YP_002729863.1 225849629 7675626 complement(60918..61211) 1 NC_012440.1 identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739; preprotein translocase, YajC subunit 61211 yajC 7675626 yajC Persephonella marina EX-H1 preprotein translocase, YajC subunit YP_002729863.1 60918 R 123214 CDS YP_002729864.1 225849630 7675533 61372..62529 1 NC_012440.1 identified by match to protein family HMM PF05036; hypothetical protein 62529 7675533 PERMA_0066 Persephonella marina EX-H1 hypothetical protein YP_002729864.1 61372 D 123214 CDS YP_002729865.1 225849631 7676189 62597..62926 1 NC_012440.1 ferredoxin, 2Fe-2S (2FeCpFd) 62926 7676189 PERMA_0067 Persephonella marina EX-H1 ferredoxin, 2Fe-2S (2FeCpFd) YP_002729865.1 62597 D 123214 CDS YP_002729866.1 225849632 7675761 complement(62948..63829) 1 NC_012440.1 identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676; 5,10-methylenetetrahydrofolate reductase 63829 metF 7675761 metF Persephonella marina EX-H1 5,10-methylenetetrahydrofolate reductase YP_002729866.1 62948 R 123214 CDS YP_002729867.1 225849633 7674578 complement(63893..65554) 1 NC_012440.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 65554 7674578 PERMA_0069 Persephonella marina EX-H1 phosphodiesterase YP_002729867.1 63893 R 123214 CDS YP_002729868.1 225849634 7674742 complement(65558..66106) 1 NC_012440.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; 5-formyltetrahydrofolate cyclo-ligase 66106 7674742 PERMA_0070 Persephonella marina EX-H1 5-formyltetrahydrofolate cyclo-ligase YP_002729868.1 65558 R 123214 CDS YP_002729869.1 225849635 7675467 complement(66358..68769) 1 NC_012440.1 identified by match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472; phenylalanyl-tRNA synthetase, betsubunit A 68769 pheT 7675467 pheT Persephonella marina EX-H1 phenylalanyl-tRNA synthetase, betsubunit A YP_002729869.1 66358 R 123214 CDS YP_002729870.1 225849636 7676053 complement(68766..69800) 1 NC_012440.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 69800 pheS 7676053 pheS Persephonella marina EX-H1 phenylalanyl-tRNA synthetase subunit alpha YP_002729870.1 68766 R 123214 CDS YP_002729871.1 225849637 7674246 complement(69816..70181) 1 NC_012440.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 70181 rplT 7674246 rplT Persephonella marina EX-H1 50S ribosomal protein L20 YP_002729871.1 69816 R 123214 CDS YP_002729872.1 225849638 7675977 complement(70204..70410) 1 NC_012440.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 70410 rpmI 7675977 rpmI Persephonella marina EX-H1 50S ribosomal protein L35 YP_002729872.1 70204 R 123214 CDS YP_002729873.1 225849639 7675176 70555..71376 1 NC_012440.1 hypothetical protein 71376 7675176 PERMA_0075 Persephonella marina EX-H1 hypothetical protein YP_002729873.1 70555 D 123214 CDS YP_002729874.1 225849640 7675965 71373..72305 1 NC_012440.1 hypothetical protein 72305 7675965 PERMA_0077 Persephonella marina EX-H1 hypothetical protein YP_002729874.1 71373 D 123214 CDS YP_002729875.1 225849641 7676100 complement(72274..72897) 1 NC_012440.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 72897 rdgB 7676100 rdgB Persephonella marina EX-H1 deoxyribonucleotide triphosphate pyrophosphatase YP_002729875.1 72274 R 123214 CDS YP_002729876.1 225849642 7674430 complement(72907..73374) 1 NC_012440.1 identified by match to protein family HMM PF02075; match to protein family HMM TIGR00228; crossover junction endodeoxyribonuclease RuvC 73374 ruvC 7674430 ruvC Persephonella marina EX-H1 crossover junction endodeoxyribonuclease RuvC YP_002729876.1 72907 R 123214 CDS YP_002729877.1 225849643 7675040 complement(73374..74126) 1 NC_012440.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 74126 7675040 PERMA_0079 Persephonella marina EX-H1 hypothetical protein YP_002729877.1 73374 R 123214 CDS YP_002729878.1 225849644 7675517 74204..74845 1 NC_012440.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; endonuclease III 74845 7675517 PERMA_0080 Persephonella marina EX-H1 endonuclease III YP_002729878.1 74204 D 123214 CDS YP_002729879.1 225849645 7676184 74866..75465 1 NC_012440.1 identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; 2-acylglycerophosphoethanolamine acyltransferase 75465 7676184 PERMA_0081 Persephonella marina EX-H1 2-acylglycerophosphoethanolamine acyltransferase YP_002729879.1 74866 D 123214 CDS YP_002729880.1 225849646 7675742 75475..76329 1 NC_012440.1 identified by match to protein family HMM PF02401; match to protein family HMM TIGR00216; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 76329 ispH 7675742 ispH Persephonella marina EX-H1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_002729880.1 75475 D 123214 CDS YP_002729881.1 225849647 7675073 76343..77416 1 NC_012440.1 identified by match to protein family HMM PF07238; type IV pilus assembly protein PilZ 77416 7675073 PERMA_0083 Persephonella marina EX-H1 type IV pilus assembly protein PilZ YP_002729881.1 76343 D 123214 CDS YP_002729882.1 225849648 7674967 77423..78184 1 NC_012440.1 identified by match to protein family HMM PF01618; chemotaxis protein PomA 78184 7674967 PERMA_0084 Persephonella marina EX-H1 chemotaxis protein PomA YP_002729882.1 77423 D 123214 CDS YP_002729883.1 225849649 7675665 78188..78883 1 NC_012440.1 identified by match to protein family HMM PF00691; flagellar motor protein MotB 78883 7675665 PERMA_0085 Persephonella marina EX-H1 flagellar motor protein MotB YP_002729883.1 78188 D 123214 CDS YP_002729884.1 225849650 7675956 78895..79602 1 NC_012440.1 identified by match to protein family HMM PF00691; OmpA family protein 79602 7675956 PERMA_0086 Persephonella marina EX-H1 OmpA family protein YP_002729884.1 78895 D 123214 CDS YP_002729885.1 225849651 7674910 79620..80804 1 NC_012440.1 identified by match to protein family HMM PF02475; methyltransferase 80804 7674910 PERMA_0087 Persephonella marina EX-H1 methyltransferase YP_002729885.1 79620 D 123214 CDS YP_002729886.1 225849652 7676015 80794..81636 1 NC_012440.1 identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; match to protein family HMM TIGR03534; protein-(glutamine-N5) methyltransferase, release factor-specific 81636 prmC 7676015 prmC Persephonella marina EX-H1 protein-(glutamine-N5) methyltransferase, release factor-specific YP_002729886.1 80794 D 123214 CDS YP_002729887.1 225849653 7675686 81629..82915 1 NC_012440.1 identified by match to protein family HMM PF00275; match to protein family HMM TIGR01072; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 82915 murA 7675686 murA Persephonella marina EX-H1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_002729887.1 81629 D 123214 CDS YP_002729888.1 225849654 7674651 complement(82896..83741) 1 NC_012440.1 identified by match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; RNA polymerase sigma-70 factor 83741 rpoD 7674651 rpoD Persephonella marina EX-H1 RNA polymerase sigma-70 factor YP_002729888.1 82896 R 123214 CDS YP_002729889.1 225849655 7675213 complement(83885..85702) 1 NC_012440.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 85702 aspS 7675213 aspS Persephonella marina EX-H1 aspartyl-tRNA synthetase YP_002729889.1 83885 R 123214 CDS YP_002729890.1 225849656 7674413 85787..86350 1 NC_012440.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; TPR Domain containing protein 86350 7674413 PERMA_0093 Persephonella marina EX-H1 TPR Domain containing protein YP_002729890.1 85787 D 123214 CDS YP_002729891.1 225849657 7674292 complement(86347..86571) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 86571 7674292 PERMA_0092 Persephonella marina EX-H1 hypothetical protein YP_002729891.1 86347 R 123214 CDS YP_002729892.1 225849658 7674445 complement(86624..87394) 1 NC_012440.1 histidinol-phosphate phosphatase 87394 7674445 PERMA_0094 Persephonella marina EX-H1 histidinol-phosphate phosphatase YP_002729892.1 86624 R 123214 CDS YP_002729893.1 225849659 7675865 complement(87454..88827) 1 NC_012440.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 88827 argH 7675865 argH Persephonella marina EX-H1 argininosuccinate lyase YP_002729893.1 87454 R 123214 CDS YP_002729894.1 225849660 7674274 88908..90437 1 NC_012440.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; signal transduction response regulator 90437 7674274 PERMA_0097 Persephonella marina EX-H1 signal transduction response regulator YP_002729894.1 88908 D 123214 CDS YP_002729895.1 225849661 7675773 complement(90405..91601) 1 NC_012440.1 identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; competence-damage inducible protein 91601 7675773 PERMA_0096 Persephonella marina EX-H1 competence-damage inducible protein YP_002729895.1 90405 R 123214 CDS YP_002729896.1 225849662 7675695 complement(91598..92701) 1 NC_012440.1 identified by match to protein family HMM PF00571; match to protein family HMM PF02163; zinc metalloprotease Sll0528 92701 7675695 PERMA_0098 Persephonella marina EX-H1 zinc metalloprotease Sll0528 YP_002729896.1 91598 R 123214 CDS YP_002729897.1 225849663 7675052 complement(92720..93223) 1 NC_012440.1 hypothetical protein 93223 7675052 PERMA_0099 Persephonella marina EX-H1 hypothetical protein YP_002729897.1 92720 R 123214 CDS YP_002729898.1 225849664 7675168 complement(93234..94094) 1 NC_012440.1 identified by match to protein family HMM PF00691; OmpA/MotB 94094 7675168 PERMA_0100 Persephonella marina EX-H1 OmpA/MotB YP_002729898.1 93234 R 123214 CDS YP_002729899.1 225849665 7675150 complement(94097..94384) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 94384 7675150 PERMA_0101 Persephonella marina EX-H1 hypothetical protein YP_002729899.1 94097 R 123214 CDS YP_002729900.1 225849666 7674647 94493..95407 1 NC_012440.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY 95407 ftsY 7674647 ftsY Persephonella marina EX-H1 signal recognition particle-docking protein FtsY YP_002729900.1 94493 D 123214 CDS YP_002729901.1 225849667 7674320 complement(95404..96921) 1 NC_012440.1 identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066; gamma-glutamyltransferase 96921 ggt 7674320 ggt Persephonella marina EX-H1 gamma-glutamyltransferase YP_002729901.1 95404 R 123214 CDS YP_002729902.1 225849668 7676003 complement(96918..98006) 1 NC_012440.1 identified by match to protein family HMM PF04107; match to protein family HMM TIGR02050; carboxylate-amine ligase Francci3_0693 98006 7676003 PERMA_0104 Persephonella marina EX-H1 carboxylate-amine ligase Francci3_0693 YP_002729902.1 96918 R 123214 CDS YP_002729903.1 225849669 7675258 complement(97996..99264) 1 NC_012440.1 identified by match to protein family HMM PF01957; nodulation competitiveness protein NfeD 99264 7675258 PERMA_0105 Persephonella marina EX-H1 nodulation competitiveness protein NfeD YP_002729903.1 97996 R 123214 CDS YP_002729904.1 225849670 7674536 99513..101399 1 NC_012440.1 identified by match to protein family HMM PF03063; match to protein family HMM TIGR01702; carbon-monoxide dehydrogenase, catalytic subunit 101399 cooS 7674536 cooS Persephonella marina EX-H1 carbon-monoxide dehydrogenase, catalytic subunit YP_002729904.1 99513 D 123214 CDS YP_002729905.1 225849671 7674374 complement(101419..102105) 1 NC_012440.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; pyridoxal phosphate enzyme, YggS family 102105 7674374 PERMA_0107 Persephonella marina EX-H1 pyridoxal phosphate enzyme, YggS family YP_002729905.1 101419 R 123214 CDS YP_002729906.1 225849672 7674228 102165..102578 1 NC_012440.1 identified by match to protein family HMM PF01597; match to protein family HMM TIGR00527; glycine cleavage system H protein 102578 gcvH 7674228 gcvH Persephonella marina EX-H1 glycine cleavage system H protein YP_002729906.1 102165 D 123214 CDS YP_002729907.1 225849673 7675437 102580..103110 1 NC_012440.1 identified by match to protein family HMM PF01842; glycine cleavage system regulatory protein 103110 7675437 PERMA_0109 Persephonella marina EX-H1 glycine cleavage system regulatory protein YP_002729907.1 102580 D 123214 CDS YP_002729908.1 225849674 7675904 103110..103619 1 NC_012440.1 identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079; peptide deformylase 103619 def_1 7675904 def_1 Persephonella marina EX-H1 peptide deformylase YP_002729908.1 103110 D 123214 CDS YP_002729909.1 225849675 7675035 103678..104730 1 NC_012440.1 hypothetical protein 104730 7675035 PERMA_0111 Persephonella marina EX-H1 hypothetical protein YP_002729909.1 103678 D 123214 CDS YP_002729910.1 225849676 7674230 104727..105005 1 NC_012440.1 flagellar biosynthetic protein FlhB 105005 7674230 PERMA_0112 Persephonella marina EX-H1 flagellar biosynthetic protein FlhB YP_002729910.1 104727 D 123214 CDS YP_002729911.1 225849677 7674875 105002..105811 1 NC_012440.1 identified by match to protein family HMM PF01875; hypothetical protein 105811 7674875 PERMA_0113 Persephonella marina EX-H1 hypothetical protein YP_002729911.1 105002 D 123214 CDS YP_002729912.1 225849678 7674816 105814..106404 1 NC_012440.1 identified by match to protein family HMM PF01871; match to protein family HMM TIGR00296; hypothetical protein 106404 7674816 PERMA_0114 Persephonella marina EX-H1 hypothetical protein YP_002729912.1 105814 D 123214 CDS YP_002729913.1 225849679 7675791 complement(106429..106854) 1 NC_012440.1 identified by match to protein family HMM PF00210; bacterioferritin (BFR) (cytochrome B-557.5) 106854 7675791 PERMA_0115 Persephonella marina EX-H1 bacterioferritin (BFR) (cytochrome B-557.5) YP_002729913.1 106429 R 123214 CDS YP_002729914.1 225849680 7674996 complement(106921..107544) 1 NC_012440.1 identified by match to protein family HMM PF00484; carbonate dehydratase 107544 7674996 PERMA_0116 Persephonella marina EX-H1 carbonate dehydratase YP_002729914.1 106921 R 123214 CDS YP_002729915.1 225849681 7674302 complement(107549..108364) 1 NC_012440.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 108364 dapD 7674302 dapD Persephonella marina EX-H1 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_002729915.1 107549 R 123214 CDS YP_002729916.1 225849682 7675220 complement(108388..108858) 1 NC_012440.1 hypothetical protein 108858 7675220 PERMA_0118 Persephonella marina EX-H1 hypothetical protein YP_002729916.1 108388 R 123214 CDS YP_002729917.1 225849683 7674611 108935..109606 1 NC_012440.1 hypothetical protein 109606 7674611 PERMA_0119 Persephonella marina EX-H1 hypothetical protein YP_002729917.1 108935 D 123214 CDS YP_002729918.1 225849684 7675747 109644..110102 1 NC_012440.1 hypothetical protein 110102 7675747 PERMA_0120 Persephonella marina EX-H1 hypothetical protein YP_002729918.1 109644 D 123214 CDS YP_002729919.1 225849685 7674312 110234..111454 1 NC_012440.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter NrgA (Membrane protein nrgA) (Protein amtB) 111454 7674312 PERMA_0121 Persephonella marina EX-H1 ammonium transporter NrgA (Membrane protein nrgA) (Protein amtB) YP_002729919.1 110234 D 123214 CDS YP_002729920.1 225849686 7675332 111466..112239 1 NC_012440.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00282; hypothetical protein 112239 7675332 PERMA_0122 Persephonella marina EX-H1 hypothetical protein YP_002729920.1 111466 D 123214 CDS YP_002729921.1 225849687 7674490 112244..113422 1 NC_012440.1 identified by match to protein family HMM PF08668; diguanylate phosphodiesterase 113422 7674490 PERMA_0124 Persephonella marina EX-H1 diguanylate phosphodiesterase YP_002729921.1 112244 D 123214 CDS YP_002729922.1 225849688 7675488 complement(113409..114368) 1 NC_012440.1 identified by match to protein family HMM PF04166; match to protein family HMM TIGR00557; 4-hydroxythreonine-4-phosphate dehydrogenase 114368 pdxA 7675488 pdxA Persephonella marina EX-H1 4-hydroxythreonine-4-phosphate dehydrogenase YP_002729922.1 113409 R 123214 CDS YP_002729923.1 225849689 7675351 complement(114372..114614) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 114614 7675351 PERMA_0125 Persephonella marina EX-H1 hypothetical protein YP_002729923.1 114372 R 123214 CDS YP_002729924.1 225849690 7674280 complement(114608..114958) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 114958 7674280 PERMA_0126 Persephonella marina EX-H1 hypothetical protein YP_002729924.1 114608 R 123214 CDS YP_002729925.1 225849691 7674737 complement(114968..115252) 1 NC_012440.1 DsrE family protein 115252 7674737 PERMA_0127 Persephonella marina EX-H1 DsrE family protein YP_002729925.1 114968 R 123214 CDS YP_002729926.1 225849692 7674905 complement(115267..115509) 1 NC_012440.1 identified by match to protein family HMM PF01206; SirA family protein 115509 7674905 PERMA_0128 Persephonella marina EX-H1 SirA family protein YP_002729926.1 115267 R 123214 CDS YP_002729927.1 225849693 7675885 complement(115520..116338) 1 NC_012440.1 identified by match to protein family HMM PF00899; match to protein family HMM PF05237; molybdenum cofactor synthesis protein 3 (Molybdopterinsynthase sulfurylase) (MPT synthase sulfurylase) 116338 7675885 PERMA_0129 Persephonella marina EX-H1 molybdenum cofactor synthesis protein 3 (Molybdopterinsynthase sulfurylase) (MPT synthase sulfurylase) YP_002729927.1 115520 R 123214 CDS YP_002729928.1 225849694 7674422 complement(116414..117556) 1 NC_012440.1 identified by match to protein family HMM PF03060; 2-nitropropane dioxygenase 117556 7674422 PERMA_0130 Persephonella marina EX-H1 2-nitropropane dioxygenase YP_002729928.1 116414 R 123214 CDS YP_002729929.1 225849695 7674557 complement(117559..117990) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 117990 7674557 PERMA_0131 Persephonella marina EX-H1 hypothetical protein YP_002729929.1 117559 R 123214 CDS YP_002729930.1 225849696 7674361 118090..119790 1 NC_012440.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 119790 recJ 7674361 recJ Persephonella marina EX-H1 single-stranded-DNA-specific exonuclease RecJ YP_002729930.1 118090 D 123214 CDS YP_002729931.1 225849697 7674559 119872..120474 1 NC_012440.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; alkyl hydroperoxide reductase, C subunit 120474 ahpC 7674559 ahpC Persephonella marina EX-H1 alkyl hydroperoxide reductase, C subunit YP_002729931.1 119872 D 123214 CDS YP_002729932.1 225849698 7674355 121421..121636 1 NC_012440.1 identified by Glimmer3; hypothetical protein 121636 7674355 PERMA_0134 Persephonella marina EX-H1 hypothetical protein YP_002729932.1 121421 D 123214 CDS YP_002729933.1 225849699 7675660 121683..121883 1 NC_012440.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 121883 rpsU 7675660 rpsU Persephonella marina EX-H1 30S ribosomal protein S21 YP_002729933.1 121683 D 123214 CDS YP_002729934.1 225849700 7675957 121894..122340 1 NC_012440.1 identified by match to protein family HMM PF02637; match to protein family HMM PF09424; GatB/Yqey domain protein 122340 7675957 PERMA_0136 Persephonella marina EX-H1 GatB/Yqey domain protein YP_002729934.1 121894 D 123214 CDS YP_002729935.1 225849701 7675158 122343..122777 1 NC_012440.1 identified by match to protein family HMM PF02674; CvpA family protein 122777 cvpA 7675158 cvpA Persephonella marina EX-H1 CvpA family protein YP_002729935.1 122343 D 123214 CDS YP_002729936.1 225849702 7675894 122765..123166 1 NC_012440.1 identified by Glimmer3; hypothetical protein 123166 7675894 PERMA_0139 Persephonella marina EX-H1 hypothetical protein YP_002729936.1 122765 D 123214 CDS YP_002729937.1 225849703 7675918 complement(123163..123642) 1 NC_012440.1 hypothetical protein 123642 7675918 PERMA_0138 Persephonella marina EX-H1 hypothetical protein YP_002729937.1 123163 R 123214 CDS YP_002729938.1 225849704 7674668 complement(123679..125001) 1 NC_012440.1 identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054; RIP metalloprotease RseP 125001 rseP 7674668 rseP Persephonella marina EX-H1 RIP metalloprotease RseP YP_002729938.1 123679 R 123214 CDS YP_002729939.1 225849705 7674584 complement(125013..126134) 1 NC_012440.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 126134 dxr 7674584 dxr Persephonella marina EX-H1 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_002729939.1 125013 R 123214 CDS YP_002729940.1 225849706 7675037 complement(126145..126750) 1 NC_012440.1 hypothetical protein 126750 7675037 PERMA_0142 Persephonella marina EX-H1 hypothetical protein YP_002729940.1 126145 R 123214 CDS YP_002729941.1 225849707 7674316 complement(126834..127535) 1 NC_012440.1 identified by match to protein family HMM PF00037; NADH-quinone oxidoreductase subunit i 2 (nadhdehydrogenase i subunit i 2) (ndh-1 subunit i 2) 127535 7674316 PERMA_0143 Persephonella marina EX-H1 NADH-quinone oxidoreductase subunit i 2 (nadhdehydrogenase i subunit i 2) (ndh-1 subunit i 2) YP_002729941.1 126834 R 123214 CDS YP_002729942.1 225849708 7674744 complement(127551..129284) 1 NC_012440.1 identified by match to protein family HMM PF00329; match to protein family HMM PF00346; NADH-quinone oxidoreductase subunit c/d (nadhdehydrogenase i subunit c/d) (ndh-1 subunit c/d) 129284 7674744 PERMA_0144 Persephonella marina EX-H1 NADH-quinone oxidoreductase subunit c/d (nadhdehydrogenase i subunit c/d) (ndh-1 subunit c/d) YP_002729942.1 127551 R 123214 CDS YP_002729943.1 225849709 7674632 129403..129915 1 NC_012440.1 identified by match to protein family HMM PF04608; phosphatidylglycerophosphatase A 129915 pgpA 7674632 pgpA Persephonella marina EX-H1 phosphatidylglycerophosphatase A YP_002729943.1 129403 D 123214 CDS YP_002729944.1 225849710 7675060 complement(129912..130214) 1 NC_012440.1 copy number protein (ORF4) 130214 7675060 PERMA_0145 Persephonella marina EX-H1 copy number protein (ORF4) YP_002729944.1 129912 R 123214 CDS YP_002729945.1 225849711 7675267 130310..131323 1 NC_012440.1 identified by match to protein family HMM PF04371; agmatine deiminase (Agmatine iminohydrolase) 131323 7675267 PERMA_0148 Persephonella marina EX-H1 agmatine deiminase (Agmatine iminohydrolase) YP_002729945.1 130310 D 123214 CDS YP_002729946.1 225849712 7674489 complement(131274..131888) 1 NC_012440.1 identified by match to protein family HMM PF08239; SH3 domain family protein 131888 7674489 PERMA_0147 Persephonella marina EX-H1 SH3 domain family protein YP_002729946.1 131274 R 123214 CDS YP_002729947.1 225849713 7674658 complement(131885..132349) 1 NC_012440.1 identified by match to protein family HMM PF00383; tRNA-specific adenosine deaminase 132349 7674658 PERMA_0149 Persephonella marina EX-H1 tRNA-specific adenosine deaminase YP_002729947.1 131885 R 123214 CDS YP_002729948.1 225849714 7676193 complement(132365..133021) 1 NC_012440.1 identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017; cytidylate kinase 133021 cmk 7676193 cmk Persephonella marina EX-H1 cytidylate kinase YP_002729948.1 132365 R 123214 CDS YP_002729949.1 225849715 7675844 complement(133023..134948) 1 NC_012440.1 identified by match to protein family HMM PF00723; glucan 1,4 alpha-glucosidase 134948 7675844 PERMA_0151 Persephonella marina EX-H1 glucan 1,4 alpha-glucosidase YP_002729949.1 133023 R 123214 CDS YP_002729950.1 225849716 7674794 complement(134951..135196) 1 NC_012440.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682; match to protein family HMM TIGR01687; molybdopterin converting factor, subunit 1 135196 moaD 7674794 moaD Persephonella marina EX-H1 molybdopterin converting factor, subunit 1 YP_002729950.1 134951 R 123214 CDS YP_002729951.1 225849717 7675498 complement(135186..135851) 1 NC_012440.1 identified by match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR01508; diaminohydroxyphosphoribosylaminopyrimidine reductase 135851 7675498 PERMA_0153 Persephonella marina EX-H1 diaminohydroxyphosphoribosylaminopyrimidine reductase YP_002729951.1 135186 R 123214 CDS YP_002729952.1 225849718 7674760 complement(135901..136524) 1 NC_012440.1 identified by match to protein family HMM PF01066; CDP-alcohol phosphatidyltransferase 136524 7674760 PERMA_0154 Persephonella marina EX-H1 CDP-alcohol phosphatidyltransferase YP_002729952.1 135901 R 123214 CDS YP_002729953.1 225849719 7675939 complement(136535..137533) 1 NC_012440.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 137533 ilvC 7675939 ilvC Persephonella marina EX-H1 ketol-acid reductoisomerase YP_002729953.1 136535 R 123214 CDS YP_002729954.1 225849720 7675412 complement(137578..138198) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 138198 7675412 PERMA_0156 Persephonella marina EX-H1 hypothetical protein YP_002729954.1 137578 R 123214 CDS YP_002729955.1 225849721 7674448 complement(138195..138761) 1 NC_012440.1 identified by match to protein family HMM PF01842; match to protein family HMM TIGR00119; acetolactate synthase, small subunit 138761 ilvN 7674448 ilvN Persephonella marina EX-H1 acetolactate synthase, small subunit YP_002729955.1 138195 R 123214 CDS YP_002729956.1 225849722 7675884 complement(138783..140528) 1 NC_012440.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118; acetolactate synthase, large subunit, biosynthetic type 140528 ilvB 7675884 ilvB Persephonella marina EX-H1 acetolactate synthase, large subunit, biosynthetic type YP_002729956.1 138783 R 123214 CDS YP_002729957.1 225849723 7675142 complement(140626..141936) 1 NC_012440.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 141936 trmFO 7675142 trmFO Persephonella marina EX-H1 tRNA (uracil-5-)-methyltransferase Gid YP_002729957.1 140626 R 123214 CDS YP_002729958.1 225849724 7674404 complement(141944..143152) 1 NC_012440.1 identified by match to protein family HMM PF00999; GerN 143152 7674404 PERMA_0160 Persephonella marina EX-H1 GerN YP_002729958.1 141944 R 123214 CDS YP_002729959.1 225849725 7674222 complement(143230..143643) 1 NC_012440.1 identified by match to protein family HMM PF02391; molybdopterin converting factor, subunit 2 143643 moaE 7674222 moaE Persephonella marina EX-H1 molybdopterin converting factor, subunit 2 YP_002729959.1 143230 R 123214 CDS YP_002729960.1 225849726 7675342 complement(143653..144174) 1 NC_012440.1 lipoprotein 144174 7675342 PERMA_0162 Persephonella marina EX-H1 lipoprotein YP_002729960.1 143653 R 123214 CDS YP_002729961.1 225849727 7675472 complement(144189..145364) 1 NC_012440.1 identified by match to protein family HMM PF00155; aspartate aminotransferase 145364 7675472 PERMA_0163 Persephonella marina EX-H1 aspartate aminotransferase YP_002729961.1 144189 R 123214 CDS YP_002729962.1 225849728 7675736 145449..146267 1 NC_012440.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478; hemolysin A 146267 7675736 PERMA_0164 Persephonella marina EX-H1 hemolysin A YP_002729962.1 145449 D 123214 CDS YP_002729963.1 225849729 7675222 146270..147160 1 NC_012440.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 147160 7675222 PERMA_0166 Persephonella marina EX-H1 LysR family transcriptional regulator YP_002729963.1 146270 D 123214 CDS YP_002729964.1 225849730 7674704 complement(147140..148105) 1 NC_012440.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; arabinose 5-phosphate isomerase 148105 7674704 PERMA_0165 Persephonella marina EX-H1 arabinose 5-phosphate isomerase YP_002729964.1 147140 R 123214 CDS YP_002729965.1 225849731 7674764 complement(148095..149015) 1 NC_012440.1 identified by match to protein family HMM PF04468; PSP1 domain protein 149015 7674764 PERMA_0167 Persephonella marina EX-H1 PSP1 domain protein YP_002729965.1 148095 R 123214 CDS YP_002729966.1 225849732 7674180 complement(149025..149954) 1 NC_012440.1 DNA polymerase III, delta prime subunit 149954 7674180 PERMA_0168 Persephonella marina EX-H1 DNA polymerase III, delta prime subunit YP_002729966.1 149025 R 123214 CDS YP_002729967.1 225849733 7674362 complement(149959..150609) 1 NC_012440.1 identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041; thymidylate kinase 150609 tmk 7674362 tmk Persephonella marina EX-H1 thymidylate kinase YP_002729967.1 149959 R 123214 CDS YP_002729968.1 225849734 7675130 150673..150948 1 NC_012440.1 identified by match to protein family HMM PF01106; match to protein family HMM PF01883; hypothetical protein 150948 7675130 PERMA_0171 Persephonella marina EX-H1 hypothetical protein YP_002729968.1 150673 D 123214 CDS YP_002729969.1 225849735 7675469 complement(150938..153673) 1 NC_012440.1 identified by match to protein family HMM PF03710; glutamate ammonia ligase adenylyl-transferase 153673 7675469 PERMA_0170 Persephonella marina EX-H1 glutamate ammonia ligase adenylyl-transferase YP_002729969.1 150938 R 123214 CDS YP_002729970.1 225849736 7674655 153729..154790 1 NC_012440.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; protease do 154790 7674655 PERMA_0172 Persephonella marina EX-H1 protease do YP_002729970.1 153729 D 123214 CDS YP_002729971.1 225849737 7675744 154862..155719 1 NC_012440.1 identified by match to protein family HMM PF00140; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43) 155719 7675744 PERMA_0173 Persephonella marina EX-H1 RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43) YP_002729971.1 154862 D 123214 CDS YP_002729972.1 225849738 7675113 complement(155723..155902) 1 NC_012440.1 hypothetical protein 155902 7675113 PERMA_0174 Persephonella marina EX-H1 hypothetical protein YP_002729972.1 155723 R 123214 CDS YP_002729973.1 225849739 7676029 complement(155884..156354) 1 NC_012440.1 identified by match to protein family HMM PF09335; hypothetical protein 156354 7676029 PERMA_0175 Persephonella marina EX-H1 hypothetical protein YP_002729973.1 155884 R 123214 CDS YP_002729974.1 225849740 7675615 complement(156371..157603) 1 NC_012440.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 157603 tyrS 7675615 tyrS Persephonella marina EX-H1 tyrosyl-tRNA synthetase YP_002729974.1 156371 R 123214 CDS YP_002729975.1 225849741 7675285 157722..158888 1 NC_012440.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR00707; acetylornithine aminotransferase (acoat) 158888 7675285 PERMA_0177 Persephonella marina EX-H1 acetylornithine aminotransferase (acoat) YP_002729975.1 157722 D 123214 CDS YP_002729976.1 225849742 7674786 158942..161056 1 NC_012440.1 identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; ribonuclease R 161056 rnr 7674786 rnr Persephonella marina EX-H1 ribonuclease R YP_002729976.1 158942 D 123214 CDS YP_002729977.1 225849743 7675648 161186..161626 1 NC_012440.1 identified by match to protein family HMM PF00430; ATP synthase F0 subunit b 161626 7675648 PERMA_0179 Persephonella marina EX-H1 ATP synthase F0 subunit b YP_002729977.1 161186 D 123214 CDS YP_002729978.1 225849744 7675508 161623..162159 1 NC_012440.1 identified by match to protein family HMM PF00430; ATP synthase F0 subunit b 162159 7675508 PERMA_0180 Persephonella marina EX-H1 ATP synthase F0 subunit b YP_002729978.1 161623 D 123214 CDS YP_002729979.1 225849745 7676126 162172..162720 1 NC_012440.1 identified by match to protein family HMM PF00213; match to protein family HMM TIGR01145; ATP synthase F1 deltsubunit A 162720 atpH 7676126 atpH Persephonella marina EX-H1 ATP synthase F1 deltsubunit A YP_002729979.1 162172 D 123214 CDS YP_002729980.1 225849746 7675441 162758..164272 1 NC_012440.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 164272 atpA_1 7675441 atpA_1 Persephonella marina EX-H1 F0F1 ATP synthase subunit alpha YP_002729980.1 162758 D 123214 CDS YP_002729981.1 225849747 7675114 164287..165162 1 NC_012440.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 165162 atpG_1 7675114 atpG_1 Persephonella marina EX-H1 F0F1 ATP synthase subunit gamma YP_002729981.1 164287 D 123214 CDS YP_002729982.1 225849748 7674630 165187..166620 1 NC_012440.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 166620 atpD_1 7674630 atpD_1 Persephonella marina EX-H1 F0F1 ATP synthase subunit beta YP_002729982.1 165187 D 123214 CDS YP_002729983.1 225849749 7675819 166637..166969 1 NC_012440.1 lipoprotein 166969 7675819 PERMA_0186 Persephonella marina EX-H1 lipoprotein YP_002729983.1 166637 D 123214 CDS YP_002729984.1 225849750 7674954 complement(166944..167978) 1 NC_012440.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 167978 7674954 PERMA_0185 Persephonella marina EX-H1 DNA-binding/iron metalloprotein/AP endonuclease YP_002729984.1 166944 R 123214 CDS YP_002729985.1 225849751 7675182 complement(167975..169207) 1 NC_012440.1 identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; carboxy- peptidase 169207 ctpA 7675182 ctpA Persephonella marina EX-H1 carboxy- peptidase YP_002729985.1 167975 R 123214 CDS YP_002729986.1 225849752 7675306 complement(169263..171314) 1 NC_012440.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; signal transduction response regulator 171314 7675306 PERMA_0188 Persephonella marina EX-H1 signal transduction response regulator YP_002729986.1 169263 R 123214 CDS YP_002729987.1 225849753 7675230 complement(171311..172048) 1 NC_012440.1 identified by match to protein family HMM PF00753; beta-lactamase domain protein 172048 7675230 PERMA_0189 Persephonella marina EX-H1 beta-lactamase domain protein YP_002729987.1 171311 R 123214 CDS YP_002729988.1 225849754 7674641 172155..173330 1 NC_012440.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 173330 aroC 7674641 aroC Persephonella marina EX-H1 chorismate synthase YP_002729988.1 172155 D 123214 CDS YP_002729989.1 225849755 7675575 173408..174043 1 NC_012440.1 identified by match to protein family HMM PF00119; match to protein family HMM TIGR01131; ATP synthase F0, subunit A 174043 atpB_1 7675575 atpB_1 Persephonella marina EX-H1 ATP synthase F0, subunit A YP_002729989.1 173408 D 123214 CDS YP_002729990.1 225849756 7674605 174055..174453 1 NC_012440.1 identified by Glimmer3; hypothetical protein 174453 7674605 PERMA_0192 Persephonella marina EX-H1 hypothetical protein YP_002729990.1 174055 D 123214 CDS YP_002729991.1 225849757 7674682 174477..174833 1 NC_012440.1 identified by match to protein family HMM PF00137; match to protein family HMM TIGR01260; ATP synthase subunit C 174833 7674682 PERMA_0193 Persephonella marina EX-H1 ATP synthase subunit C YP_002729991.1 174477 D 123214 CDS YP_002729992.1 225849758 7675016 174931..175074 1 NC_012440.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 175074 rpmH 7675016 rpmH Persephonella marina EX-H1 50S ribosomal protein L34 YP_002729992.1 174931 D 123214 CDS YP_002729993.1 225849759 7675095 175415..175621 1 NC_012440.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein 175621 7675095 PERMA_0195 Persephonella marina EX-H1 hypothetical protein YP_002729993.1 175415 D 123214 CDS YP_002729994.1 225849760 7674298 175642..177255 1 NC_012440.1 identified by match to protein family HMM PF02096; match to protein family HMM TIGR03592; match to protein family HMM TIGR03593; inner membrane protein OxaA 177255 7674298 PERMA_0196 Persephonella marina EX-H1 inner membrane protein OxaA YP_002729994.1 175642 D 123214 CDS YP_002729995.1 225849761 7675738 177252..178610 1 NC_012440.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 178610 trmE 7675738 trmE Persephonella marina EX-H1 tRNA modification GTPase TrmE YP_002729995.1 177252 D 123214 CDS YP_002729996.1 225849762 7675053 178650..179915 1 NC_012440.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 179915 rho 7675053 rho Persephonella marina EX-H1 transcription termination factor Rho YP_002729996.1 178650 D 123214 CDS YP_002729997.1 225849763 7676134 179991..180188 1 NC_012440.1 identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105; ribosomal protein L31 180188 rpmE 7676134 rpmE Persephonella marina EX-H1 ribosomal protein L31 YP_002729997.1 179991 D 123214 CDS YP_002729998.1 225849764 7675569 180188..181273 1 NC_012440.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 181273 prfA 7675569 prfA Persephonella marina EX-H1 peptide chain release factor 1 YP_002729998.1 180188 D 123214 CDS YP_002729999.1 225849765 7674922 181667..181867 1 NC_012440.1 identified by Glimmer3; hypothetical protein 181867 7674922 PERMA_0202 Persephonella marina EX-H1 hypothetical protein YP_002729999.1 181667 D 123214 CDS YP_002730000.1 225849766 7674626 181860..181973 1 NC_012440.1 identified by Glimmer3; hypothetical protein 181973 7674626 PERMA_0203 Persephonella marina EX-H1 hypothetical protein YP_002730000.1 181860 D 123214 CDS YP_002730001.1 225849767 7675591 complement(182189..182371) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 182371 7675591 PERMA_0204 Persephonella marina EX-H1 hypothetical protein YP_002730001.1 182189 R 123214 CDS YP_002730002.1 225849768 7675094 complement(182387..182536) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 182536 7675094 PERMA_0205 Persephonella marina EX-H1 hypothetical protein YP_002730002.1 182387 R 123214 CDS YP_002730003.1 225849769 7674926 182923..184614 1 NC_012440.1 identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM PF04073; match to protein family HMM TIGR00409; prolyl-tRNA synthetase 184614 proS 7674926 proS Persephonella marina EX-H1 prolyl-tRNA synthetase YP_002730003.1 182923 D 123214 CDS YP_002730004.1 225849770 7675321 184616..185473 1 NC_012440.1 identified by match to protein family HMM PF01590; adenylate/guanylate cyclase 185473 7675321 PERMA_0208 Persephonella marina EX-H1 adenylate/guanylate cyclase YP_002730004.1 184616 D 123214 CDS YP_002730005.1 225849771 7675558 185476..187203 1 NC_012440.1 identified by match to protein family HMM PF00437; match to protein family HMM PF05157; type IV pilus assembly protein TapB 187203 7675558 PERMA_0209 Persephonella marina EX-H1 type IV pilus assembly protein TapB YP_002730005.1 185476 D 123214 CDS YP_002730006.1 225849772 7675181 complement(187206..188090) 1 NC_012440.1 identified by match to protein family HMM PF01555; DNA methylase 188090 7675181 PERMA_0210 Persephonella marina EX-H1 DNA methylase YP_002730006.1 187206 R 123214 CDS YP_002730007.1 225849773 7674670 complement(188083..188742) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 188742 7674670 PERMA_0211 Persephonella marina EX-H1 hypothetical protein YP_002730007.1 188083 R 123214 CDS YP_002730008.1 225849774 7675714 complement(188787..189899) 1 NC_012440.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 189899 ychF 7675714 ychF Persephonella marina EX-H1 GTP-dependent nucleic acid-binding protein EngD YP_002730008.1 188787 R 123214 CDS YP_002730009.1 225849775 7674840 complement(189963..190232) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 190232 7674840 PERMA_0213 Persephonella marina EX-H1 hypothetical protein YP_002730009.1 189963 R 123214 CDS YP_002730010.1 225849776 7676192 190431..191618 1 NC_012440.1 identified by match to protein family HMM PF00375; proton/sodium-glutamate symport protein (Glutamate-aspartate carrierprotein) 191618 7676192 PERMA_0214 Persephonella marina EX-H1 proton/sodium-glutamate symport protein (Glutamate-aspartate carrierprotein) YP_002730010.1 190431 D 123214 CDS YP_002730011.1 225849777 7676171 191619..192527 1 NC_012440.1 identified by match to protein family HMM PF03547; integral membrane protein 192527 7676171 PERMA_0215 Persephonella marina EX-H1 integral membrane protein YP_002730011.1 191619 D 123214 CDS YP_002730012.1 225849778 7674216 192529..192843 1 NC_012440.1 glycoside hydrolase, family 57 192843 7674216 PERMA_0216 Persephonella marina EX-H1 glycoside hydrolase, family 57 YP_002730012.1 192529 D 123214 CDS YP_002730013.1 225849779 7675083 192830..193960 1 NC_012440.1 identified by match to protein family HMM PF00266; cysteine desulfurase (Nitrogenase metalloclustersbiosynthesis protein NifS) 193960 7675083 PERMA_0218 Persephonella marina EX-H1 cysteine desulfurase (Nitrogenase metalloclustersbiosynthesis protein NifS) YP_002730013.1 192830 D 123214 CDS YP_002730014.1 225849780 7675723 complement(193954..194160) 1 NC_012440.1 anti sigma factor FlgM 194160 7675723 PERMA_0217 Persephonella marina EX-H1 anti sigma factor FlgM YP_002730014.1 193954 R 123214 CDS YP_002730015.1 225849781 7675749 194225..194842 1 NC_012440.1 identified by match to protein family HMM PF00814; peptidase M22 glycoprotease 194842 7675749 PERMA_0220 Persephonella marina EX-H1 peptidase M22 glycoprotease YP_002730015.1 194225 D 123214 CDS YP_002730016.1 225849782 7674271 complement(194828..195796) 1 NC_012440.1 identified by match to protein family HMM PF02541; exopolyphosphatase 195796 7674271 PERMA_0219 Persephonella marina EX-H1 exopolyphosphatase YP_002730016.1 194828 R 123214 CDS YP_002730017.1 225849783 7675715 complement(195801..196043) 1 NC_012440.1 identified by match to protein family HMM PF09383; ferredoxin 196043 7675715 PERMA_0221 Persephonella marina EX-H1 ferredoxin YP_002730017.1 195801 R 123214 CDS YP_002730018.1 225849784 7675000 complement(196047..196331) 1 NC_012440.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01687; MoaD family protein 196331 7675000 PERMA_0222 Persephonella marina EX-H1 MoaD family protein YP_002730018.1 196047 R 123214 CDS YP_002730019.1 225849785 7674817 complement(196342..197589) 1 NC_012440.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 197589 thrC_1 7674817 thrC_1 Persephonella marina EX-H1 threonine synthase YP_002730019.1 196342 R 123214 CDS YP_002730020.1 225849786 7675782 197728..199197 1 NC_012440.1 identified by match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01302; inosine-5'-monophosphate dehydrogenase 199197 guaB 7675782 guaB Persephonella marina EX-H1 inosine-5'-monophosphate dehydrogenase YP_002730020.1 197728 D 123214 CDS YP_002730021.1 225849787 7674753 199211..199327 1 NC_012440.1 identified by Glimmer3; hypothetical protein 199327 7674753 PERMA_0225 Persephonella marina EX-H1 hypothetical protein YP_002730021.1 199211 D 123214 CDS YP_002730022.1 225849788 7674876 199350..199715 1 NC_012440.1 hypothetical protein 199715 7674876 PERMA_0226 Persephonella marina EX-H1 hypothetical protein YP_002730022.1 199350 D 123214 CDS YP_002730023.1 225849789 7674790 199737..200933 1 NC_012440.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 200933 pgk 7674790 pgk Persephonella marina EX-H1 phosphoglycerate kinase YP_002730023.1 199737 D 123214 CDS YP_002730024.1 225849790 7675027 200946..201725 1 NC_012440.1 identified by match to protein family HMM PF00459; inositol-1-monophosphatase 201725 7675027 PERMA_0228 Persephonella marina EX-H1 inositol-1-monophosphatase YP_002730024.1 200946 D 123214 CDS YP_002730025.1 225849791 7675352 201725..202810 1 NC_012440.1 identified by match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807; chorismate mutase/prephenate dehydratase 202810 pheA 7675352 pheA Persephonella marina EX-H1 chorismate mutase/prephenate dehydratase YP_002730025.1 201725 D 123214 CDS YP_002730026.1 225849792 7676120 complement(202797..203867) 1 NC_012440.1 identified by match to protein family HMM PF03739; permease, YjgP/YjgQ family 203867 7676120 PERMA_0229 Persephonella marina EX-H1 permease, YjgP/YjgQ family YP_002730026.1 202797 R 123214 CDS YP_002730027.1 225849793 7675581 204016..204918 1 NC_012440.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 204918 rpsB 7675581 rpsB Persephonella marina EX-H1 30S ribosomal protein S2 YP_002730027.1 204016 D 123214 CDS YP_002730028.1 225849794 7675377 204918..205511 1 NC_012440.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 205511 tsf 7675377 tsf Persephonella marina EX-H1 elongation factor Ts YP_002730028.1 204918 D 123214 CDS YP_002730029.1 225849795 7676039 205513..206223 1 NC_012440.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 206223 pyrH 7676039 pyrH Persephonella marina EX-H1 uridylate kinase YP_002730029.1 205513 D 123214 CDS YP_002730030.1 225849796 7674284 206320..206874 1 NC_012440.1 identified by match to protein family HMM PF01765; match to protein family HMM TIGR00496; ribosome recycling factor 206874 frr 7674284 frr Persephonella marina EX-H1 ribosome recycling factor YP_002730030.1 206320 D 123214 CDS YP_002730031.1 225849797 7675199 206942..207397 1 NC_012440.1 identified by match to protein family HMM PF02576; similar to protein aq_260; hypothetical protein 207397 7675199 PERMA_0235 Persephonella marina EX-H1 hypothetical protein YP_002730031.1 206942 D 123214 CDS YP_002730032.1 225849798 7676051 207410..208534 1 NC_012440.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF08529; match to protein family HMM TIGR01953; transcription termination factor NusA 208534 nusA 7676051 nusA Persephonella marina EX-H1 transcription termination factor NusA YP_002730032.1 207410 D 123214 CDS YP_002730033.1 225849799 7675153 208691..209056 1 NC_012440.1 identified by match to protein family HMM PF01248; ribosomal protein L7Ae/L30e/S12e/Gadd45 209056 7675153 PERMA_0237 Persephonella marina EX-H1 ribosomal protein L7Ae/L30e/S12e/Gadd45 YP_002730033.1 208691 D 123214 CDS YP_002730034.1 225849800 7676031 209044..211671 1 NC_012440.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 211671 infB 7676031 infB Persephonella marina EX-H1 translation initiation factor IF-2 YP_002730034.1 209044 D 123214 CDS YP_002730035.1 225849801 7674419 complement(211673..212308) 1 NC_012440.1 identified by match to protein family HMM PF07238; type IV pilus assembly protein PilZ 212308 7674419 PERMA_0239 Persephonella marina EX-H1 type IV pilus assembly protein PilZ YP_002730035.1 211673 R 123214 CDS YP_002730036.1 225849802 7674616 212349..213407 1 NC_012440.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; protein smf (DNA-processing chain A) 213407 7674616 PERMA_0241 Persephonella marina EX-H1 protein smf (DNA-processing chain A) YP_002730036.1 212349 D 123214 CDS YP_002730037.1 225849803 7674285 complement(213375..214694) 1 NC_012440.1 identified by match to protein family HMM PF00324; match to protein family HMM PF03845; amino acid transporter 214694 7674285 PERMA_0240 Persephonella marina EX-H1 amino acid transporter YP_002730037.1 213375 R 123214 CDS YP_002730038.1 225849804 7675445 complement(214695..216824) 1 NC_012440.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; match to protein family HMM TIGR03591; polynucleotide phosphorylase/polyadenylase 216824 pnp 7675445 pnp Persephonella marina EX-H1 polynucleotide phosphorylase/polyadenylase YP_002730038.1 214695 R 123214 CDS YP_002730039.1 225849805 7675818 complement(216824..217108) 1 NC_012440.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 217108 rpsO 7675818 rpsO Persephonella marina EX-H1 30S ribosomal protein S15 YP_002730039.1 216824 R 123214 CDS YP_002730040.1 225849806 7675505 217272..217790 1 NC_012440.1 identified by Glimmer3; hypothetical protein 217790 7675505 PERMA_0244 Persephonella marina EX-H1 hypothetical protein YP_002730040.1 217272 D 123214 CDS YP_002730041.1 225849807 7674524 complement(217815..217973) 1 NC_012440.1 hypothetical protein 217973 7674524 PERMA_0245 Persephonella marina EX-H1 hypothetical protein YP_002730041.1 217815 R 123214 CDS YP_002730042.1 225849808 7676177 complement(218233..218496) 1 NC_012440.1 identified by match to protein family HMM PF01402; ribbon-helix-helix protein, CopG family 218496 7676177 PERMA_0246 Persephonella marina EX-H1 ribbon-helix-helix protein, CopG family YP_002730042.1 218233 R 123214 CDS YP_002730043.1 225849809 7675587 complement(218871..219371) 1 NC_012440.1 endonuclease 219371 7675587 PERMA_0247 Persephonella marina EX-H1 endonuclease YP_002730043.1 218871 R 123214 CDS YP_002730044.1 225849810 7675528 complement(219377..221233) 1 NC_012440.1 identified by match to protein family HMM PF09369; hypothetical protein 221233 7675528 PERMA_0248 Persephonella marina EX-H1 hypothetical protein YP_002730044.1 219377 R 123214 CDS YP_002730045.1 225849811 7674540 complement(221251..225210) 1 NC_012440.1 identified by match to protein family HMM PF00271; superfamily II DNA and RNA helicase 225210 7674540 PERMA_0249 Persephonella marina EX-H1 superfamily II DNA and RNA helicase YP_002730045.1 221251 R 123214 CDS YP_002730046.1 225849812 7674390 complement(225213..225899) 1 NC_012440.1 identified by match to protein family HMM PF00633; T/G-specific DNA glycosylase 225899 7674390 PERMA_0250 Persephonella marina EX-H1 T/G-specific DNA glycosylase YP_002730046.1 225213 R 123214 CDS YP_002730047.1 225849813 7675690 complement(225896..226819) 1 NC_012440.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; modification methylase FnuDI 226819 7675690 PERMA_0251 Persephonella marina EX-H1 modification methylase FnuDI YP_002730047.1 225896 R 123214 CDS YP_002730048.1 225849814 7674181 complement(226974..227261) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 227261 7674181 PERMA_0252 Persephonella marina EX-H1 hypothetical protein YP_002730048.1 226974 R 123214 CDS YP_002730049.1 225849815 7674929 227980..229119 1 NC_012440.1 identified by match to protein family HMM PF08495; hypothetical protein 229119 7674929 PERMA_0254 Persephonella marina EX-H1 hypothetical protein YP_002730049.1 227980 D 123214 CDS YP_002730050.1 225849816 7674409 229116..230498 1 NC_012440.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase/phosphodiesterase 230498 7674409 PERMA_0255 Persephonella marina EX-H1 diguanylate cyclase/phosphodiesterase YP_002730050.1 229116 D 123214 CDS YP_002730051.1 225849817 7674243 230510..231295 1 NC_012440.1 identified by match to protein family HMM PF00005; ABC transporter 231295 7674243 PERMA_0256 Persephonella marina EX-H1 ABC transporter YP_002730051.1 230510 D 123214 CDS YP_002730052.1 225849818 7675907 231364..232434 1 NC_012440.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 232434 thrC_2 7675907 thrC_2 Persephonella marina EX-H1 threonine synthase YP_002730052.1 231364 D 123214 CDS YP_002730053.1 225849819 7674182 232431..233375 1 NC_012440.1 identified by match to protein family HMM PF02558; match to protein family HMM PF08546; match to protein family HMM TIGR00745; 2-dehydropantoate 2-reductase 233375 panE 7674182 panE Persephonella marina EX-H1 2-dehydropantoate 2-reductase YP_002730053.1 232431 D 123214 CDS YP_002730054.1 225849820 7675538 233434..234219 1 NC_012440.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 234219 rph 7675538 rph Persephonella marina EX-H1 ribonuclease PH YP_002730054.1 233434 D 123214 CDS YP_002730055.1 225849821 7674958 234219..235517 1 NC_012440.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 235517 purA 7674958 purA Persephonella marina EX-H1 adenylosuccinate synthetase YP_002730055.1 234219 D 123214 CDS YP_002730056.1 225849822 7675847 235520..235783 1 NC_012440.1 identified by Glimmer3; hypothetical protein 235783 7675847 PERMA_0261 Persephonella marina EX-H1 hypothetical protein YP_002730056.1 235520 D 123214 CDS YP_002730057.1 225849823 7676197 235783..237363 1 NC_012440.1 identified by Glimmer3; hypothetical protein 237363 7676197 PERMA_0262 Persephonella marina EX-H1 hypothetical protein YP_002730057.1 235783 D 123214 CDS YP_002730058.1 225849824 7675119 237360..237737 1 NC_012440.1 identified by Glimmer3; hypothetical protein 237737 7675119 PERMA_0263 Persephonella marina EX-H1 hypothetical protein YP_002730058.1 237360 D 123214 CDS YP_002730059.1 225849825 7674485 237734..239320 1 NC_012440.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; yjef family protein 239320 7674485 PERMA_0264 Persephonella marina EX-H1 yjef family protein YP_002730059.1 237734 D 123214 CDS YP_002730060.1 225849826 7675796 239358..240734 1 NC_012440.1 aldolase 240734 7675796 PERMA_0265 Persephonella marina EX-H1 aldolase YP_002730060.1 239358 D 123214 CDS YP_002730061.1 225849827 7675151 240740..241249 1 NC_012440.1 hypothetical protein 241249 7675151 PERMA_0266 Persephonella marina EX-H1 hypothetical protein YP_002730061.1 240740 D 123214 CDS YP_002730062.1 225849828 7675703 241261..242226 1 NC_012440.1 identified by match to protein family HMM PF00316; fructose-1,6-bisphosphatase 242226 fbp 7675703 fbp Persephonella marina EX-H1 fructose-1,6-bisphosphatase YP_002730062.1 241261 D 123214 CDS YP_002730063.1 225849829 7675462 complement(242216..244015) 1 NC_012440.1 identified by match to protein family HMM PF00563; diguanylate cyclase/phosphodiesterase 244015 7675462 PERMA_0267 Persephonella marina EX-H1 diguanylate cyclase/phosphodiesterase YP_002730063.1 242216 R 123214 CDS YP_002730064.1 225849830 7675544 complement(244009..245052) 1 NC_012440.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; 2,3-butanediol dehydrogenase 245052 7675544 PERMA_0269 Persephonella marina EX-H1 2,3-butanediol dehydrogenase YP_002730064.1 244009 R 123214 CDS YP_002730065.1 225849831 7674654 245154..245528 1 NC_012440.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 245528 crcB 7674654 crcB Persephonella marina EX-H1 camphor resistance protein CrcB YP_002730065.1 245154 D 123214 CDS YP_002730066.1 225849832 7675624 245538..245864 1 NC_012440.1 identified by match to protein family HMM PF02641; hypothetical protein 245864 7675624 PERMA_0271 Persephonella marina EX-H1 hypothetical protein YP_002730066.1 245538 D 123214 CDS YP_002730067.1 225849833 7675349 245934..246512 1 NC_012440.1 identified by Glimmer3; hypothetical protein 246512 7675349 PERMA_0272 Persephonella marina EX-H1 hypothetical protein YP_002730067.1 245934 D 123214 CDS YP_002730068.1 225849834 7675026 246992..247450 1 NC_012440.1 identified by match to protein family HMM PF00011; match to protein family HMM PF04969; small heat shock protein 247450 7675026 PERMA_0273 Persephonella marina EX-H1 small heat shock protein YP_002730068.1 246992 D 123214 CDS YP_002730069.1 225849835 7674329 247499..247774 1 NC_012440.1 identified by Glimmer3; hypothetical protein 247774 7674329 PERMA_0274 Persephonella marina EX-H1 hypothetical protein YP_002730069.1 247499 D 123214 CDS YP_002730070.1 225849836 7675034 247812..249302 1 NC_012440.1 identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00564; anthranilate synthase component I 249302 trpE 7675034 trpE Persephonella marina EX-H1 anthranilate synthase component I YP_002730070.1 247812 D 123214 CDS YP_002730071.1 225849837 7674688 complement(249299..250360) 1 NC_012440.1 catalyzes the formation of succinate and diaminoheptanedioate from succinyldiaminoheptanedioate; succinyl-diaminopimelate desuccinylase 250360 dapE 7674688 dapE Persephonella marina EX-H1 succinyl-diaminopimelate desuccinylase YP_002730071.1 249299 R 123214 CDS YP_002730072.1 225849838 7675421 complement(250357..251142) 1 NC_012440.1 identified by match to protein family HMM PF01614; transcriptional regulator 251142 7675421 PERMA_0277 Persephonella marina EX-H1 transcriptional regulator YP_002730072.1 250357 R 123214 CDS YP_002730073.1 225849839 7674938 complement(251356..252171) 1 NC_012440.1 identified by match to protein family HMM PF04055; radical SAM enzyme, Cfr family 252171 7674938 PERMA_0280 Persephonella marina EX-H1 radical SAM enzyme, Cfr family YP_002730073.1 251356 R 123214 CDS YP_002730074.1 225849840 7675255 252260..254896 1 NC_012440.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 254896 alaS 7675255 alaS Persephonella marina EX-H1 alanyl-tRNA synthetase YP_002730074.1 252260 D 123214 CDS YP_002730075.1 225849841 7674260 254935..255363 1 NC_012440.1 identified by match to protein family HMM PF03479; hypothetical protein 255363 7674260 PERMA_0282 Persephonella marina EX-H1 hypothetical protein YP_002730075.1 254935 D 123214 CDS YP_002730076.1 225849842 7674634 complement(255367..255888) 1 NC_012440.1 identified by match to protein family HMM PF03350; hypothetical protein 255888 7674634 PERMA_0283 Persephonella marina EX-H1 hypothetical protein YP_002730076.1 255367 R 123214 CDS YP_002730077.1 225849843 7674431 255989..256789 1 NC_012440.1 identified by match to protein family HMM PF01578; cytochrome c biogenesis protein 256789 7674431 PERMA_0285 Persephonella marina EX-H1 cytochrome c biogenesis protein YP_002730077.1 255989 D 123214 CDS YP_002730078.1 225849844 7674582 complement(256779..257330) 1 NC_012440.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR00336; orotate phosphoribosyltransferase 257330 pyrE 7674582 pyrE Persephonella marina EX-H1 orotate phosphoribosyltransferase YP_002730078.1 256779 R 123214 CDS YP_002730079.1 225849845 7674369 complement(257341..258081) 1 NC_012440.1 identified by match to protein family HMM PF00795; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 258081 7674369 PERMA_0286 Persephonella marina EX-H1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_002730079.1 257341 R 123214 CDS YP_002730080.1 225849846 7674307 258211..260466 1 NC_012440.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 260466 purL 7674307 purL Persephonella marina EX-H1 phosphoribosylformylglycinamidine synthase II YP_002730080.1 258211 D 123214 CDS YP_002730081.1 225849847 7675120 260634..261224 1 NC_012440.1 identified by match to protein family HMM PF00116; cytochrome c oxidase, subunit II 261224 7675120 PERMA_0288 Persephonella marina EX-H1 cytochrome c oxidase, subunit II YP_002730081.1 260634 D 123214 CDS YP_002730082.1 225849848 7675826 261221..262882 1 NC_012440.1 identified by match to protein family HMM PF00115; cytochrome c oxidase, subunit I 262882 7675826 PERMA_0289 Persephonella marina EX-H1 cytochrome c oxidase, subunit I YP_002730082.1 261221 D 123214 CDS YP_002730083.1 225849849 7674627 262885..263475 1 NC_012440.1 hypothetical protein 263475 7674627 PERMA_0290 Persephonella marina EX-H1 hypothetical protein YP_002730083.1 262885 D 123214 CDS YP_002730084.1 225849850 7675215 263536..264084 1 NC_012440.1 hypothetical protein 264084 7675215 PERMA_0291 Persephonella marina EX-H1 hypothetical protein YP_002730084.1 263536 D 123214 CDS YP_002730085.1 225849851 7674273 264072..267137 1 NC_012440.1 identified by match to protein family HMM PF00580; UvrD/REP helicase 267137 7674273 PERMA_0293 Persephonella marina EX-H1 UvrD/REP helicase YP_002730085.1 264072 D 123214 CDS YP_002730086.1 225849852 7675308 complement(267125..268267) 1 NC_012440.1 hypothetical protein 268267 7675308 PERMA_0292 Persephonella marina EX-H1 hypothetical protein YP_002730086.1 267125 R 123214 CDS YP_002730087.1 225849853 7675156 268381..269739 1 NC_012440.1 cytochrome c biogenesis protein, CcmF/CycK/CcsA family 269739 7675156 PERMA_0295 Persephonella marina EX-H1 cytochrome c biogenesis protein, CcmF/CycK/CcsA family YP_002730087.1 268381 D 123214 CDS YP_002730088.1 225849854 7674299 complement(269736..270365) 1 NC_012440.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325; transcriptional regulator, Crp/Fnr family 270365 7674299 PERMA_0294 Persephonella marina EX-H1 transcriptional regulator, Crp/Fnr family YP_002730088.1 269736 R 123214 CDS YP_002730089.1 225849855 7675938 complement(270398..271093) 1 NC_012440.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02495; anaerobic ribonucleoside-triphosphate reductase activating protein 271093 7675938 PERMA_0296 Persephonella marina EX-H1 anaerobic ribonucleoside-triphosphate reductase activating protein YP_002730089.1 270398 R 123214 CDS YP_002730090.1 225849856 7674880 complement(271175..272980) 1 NC_012440.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 272980 nrdD 7674880 nrdD Persephonella marina EX-H1 anaerobic ribonucleoside triphosphate reductase YP_002730090.1 271175 R 123214 CDS YP_002730091.1 225849857 7675874 273268..276108 1 NC_012440.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 276108 napA 7675874 napA Persephonella marina EX-H1 nitrate reductase catalytic subunit YP_002730091.1 273268 D 123214 CDS YP_002730092.1 225849858 7674914 276121..276981 1 NC_012440.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component 276981 napG 7674914 napG Persephonella marina EX-H1 quinol dehydrogenase periplasmic component YP_002730092.1 276121 D 123214 CDS YP_002730093.1 225849859 7674520 276971..277831 1 NC_012440.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component 277831 napH 7674520 napH Persephonella marina EX-H1 quinol dehydrogenase membrane component YP_002730093.1 276971 D 123214 CDS YP_002730094.1 225849860 7675514 277824..278366 1 NC_012440.1 identified by match to protein family HMM PF03892; periplasmic nitrate reductase, diheme cytochrome c subunit 278366 napB 7675514 napB Persephonella marina EX-H1 periplasmic nitrate reductase, diheme cytochrome c subunit YP_002730094.1 277824 D 123214 CDS YP_002730095.1 225849861 7675105 278373..278927 1 NC_012440.1 identified by match to protein family HMM PF00037; periplasmic nitrate reductase maturation protein NapF 278927 7675105 PERMA_0302 Persephonella marina EX-H1 periplasmic nitrate reductase maturation protein NapF YP_002730095.1 278373 D 123214 CDS YP_002730096.1 225849862 7675821 278920..279876 1 NC_012440.1 periplasmic protein 279876 7675821 PERMA_0303 Persephonella marina EX-H1 periplasmic protein YP_002730096.1 278920 D 123214 CDS YP_002730097.1 225849863 7674774 279879..280238 1 NC_012440.1 identified by match to protein family HMM PF03927; periplasmic nitrate reductase component NapD 280238 7674774 PERMA_0304 Persephonella marina EX-H1 periplasmic nitrate reductase component NapD YP_002730097.1 279879 D 123214 CDS YP_002730098.1 225849864 7674845 280443..281711 1 NC_012440.1 hypothetical protein 281711 7674845 PERMA_0305 Persephonella marina EX-H1 hypothetical protein YP_002730098.1 280443 D 123214 CDS YP_002730099.1 225849865 7675169 281816..283459 1 NC_012440.1 identified by match to protein family HMM PF02239; nitrite reductase (cytochrome cd1) (cytochromeoxidase) (Hydroxylamine reductase) 283459 7675169 PERMA_0306 Persephonella marina EX-H1 nitrite reductase (cytochrome cd1) (cytochromeoxidase) (Hydroxylamine reductase) YP_002730099.1 281816 D 123214 CDS YP_002730100.1 225849866 7675487 283462..285132 1 NC_012440.1 identified by match to protein family HMM PF00034; match to protein family HMM PF02239; cytochrome c, class I 285132 7675487 PERMA_0307 Persephonella marina EX-H1 cytochrome c, class I YP_002730100.1 283462 D 123214 CDS YP_002730101.1 225849867 7675748 285116..286204 1 NC_012440.1 identified by match to protein family HMM PF04055; heme d1 biosynthesis protein NirJ 286204 7675748 PERMA_0308 Persephonella marina EX-H1 heme d1 biosynthesis protein NirJ YP_002730101.1 285116 D 123214 CDS YP_002730102.1 225849868 7675106 286192..287250 1 NC_012440.1 identified by match to protein family HMM PF02239; heme d1 biosynthesis protein NirF 287250 7675106 PERMA_0309 Persephonella marina EX-H1 heme d1 biosynthesis protein NirF YP_002730102.1 286192 D 123214 CDS YP_002730103.1 225849869 7675767 287264..288019 1 NC_012440.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469; uroporphyrinogen-III C-methyltransferase 288019 cobA 7675767 cobA Persephonella marina EX-H1 uroporphyrinogen-III C-methyltransferase YP_002730103.1 287264 D 123214 CDS YP_002730104.1 225849870 7675649 288016..289050 1 NC_012440.1 transcriptional regulator, AsnC/Lrp family 289050 7675649 PERMA_0311 Persephonella marina EX-H1 transcriptional regulator, AsnC/Lrp family YP_002730104.1 288016 D 123214 CDS YP_002730105.1 225849871 7675855 289016..289498 1 NC_012440.1 identified by match to protein family HMM PF02830; V4R domain protein 289498 7675855 PERMA_0312 Persephonella marina EX-H1 V4R domain protein YP_002730105.1 289016 D 123214 CDS YP_002730106.1 225849872 7675011 289599..289892 1 NC_012440.1 hypothetical protein 289892 7675011 PERMA_0313 Persephonella marina EX-H1 hypothetical protein YP_002730106.1 289599 D 123214 CDS YP_002730107.1 225849873 7674499 complement(289923..292145) 1 NC_012440.1 nitric oxide reductase, cytochrome B subunit 292145 7674499 PERMA_0314 Persephonella marina EX-H1 nitric oxide reductase, cytochrome B subunit YP_002730107.1 289923 R 123214 CDS YP_002730108.1 225849874 7674486 complement(292159..292566) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 292566 7674486 PERMA_0315 Persephonella marina EX-H1 hypothetical protein YP_002730108.1 292159 R 123214 CDS YP_002730109.1 225849875 7674721 complement(292808..293137) 1 NC_012440.1 identified by match to protein family HMM PF07883; cupin domain protein 293137 7674721 PERMA_0316 Persephonella marina EX-H1 cupin domain protein YP_002730109.1 292808 R 123214 CDS YP_002730110.1 225849876 7674221 complement(293176..293604) 1 NC_012440.1 hypothetical protein 293604 7674221 PERMA_0317 Persephonella marina EX-H1 hypothetical protein YP_002730110.1 293176 R 123214 CDS YP_002730111.1 225849877 7674762 complement(293607..294035) 1 NC_012440.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; Rrf2 family protein 294035 7674762 PERMA_0318 Persephonella marina EX-H1 Rrf2 family protein YP_002730111.1 293607 R 123214 CDS YP_002730112.1 225849878 7674855 complement(294035..294463) 1 NC_012440.1 identified by match to protein family HMM PF01814; hemerythrin HHE cation binding domain subfamily 294463 7674855 PERMA_0319 Persephonella marina EX-H1 hemerythrin HHE cation binding domain subfamily YP_002730112.1 294035 R 123214 CDS YP_002730113.1 225849879 7674804 complement(294538..294996) 1 NC_012440.1 hypothetical protein 294996 7674804 PERMA_0320 Persephonella marina EX-H1 hypothetical protein YP_002730113.1 294538 R 123214 CDS YP_002730114.1 225849880 7675949 295126..295815 1 NC_012440.1 identified by match to protein family HMM PF01487; match to protein family HMM TIGR01093; 3-dehydroquinate dehydratase, type I 295815 aroD 7675949 aroD Persephonella marina EX-H1 3-dehydroquinate dehydratase, type I YP_002730114.1 295126 D 123214 CDS YP_002730115.1 225849881 7675334 295819..296169 1 NC_012440.1 identified by match to protein family HMM PF01258; DnaK suppressor protein 296169 7675334 PERMA_0322 Persephonella marina EX-H1 DnaK suppressor protein YP_002730115.1 295819 D 123214 CDS YP_002730116.1 225849882 7675839 296184..296768 1 NC_012440.1 identified by match to protein family HMM PF00857; pyrazinamidase/nicotinamidase 296768 7675839 PERMA_0323 Persephonella marina EX-H1 pyrazinamidase/nicotinamidase YP_002730116.1 296184 D 123214 CDS YP_002730117.1 225849883 7675617 296765..297076 1 NC_012440.1 protein 1243; identified by match to protein family HMM PF01906; hypothetical protein 297076 7675617 PERMA_0324 Persephonella marina EX-H1 hypothetical protein YP_002730117.1 296765 D 123214 CDS YP_002730118.1 225849884 7674399 297078..298832 1 NC_012440.1 identified by match to protein family HMM PF00476; match to protein family HMM PF01612; DNA polymerase I 298832 7674399 PERMA_0325 Persephonella marina EX-H1 DNA polymerase I YP_002730118.1 297078 D 123214 CDS YP_002730119.1 225849885 7674622 complement(298835..299203) 1 NC_012440.1 identified by match to protein family HMM PF00023; 2-5A-dependent ribonuclease (2-5A-dependent RNase)(Ribonuclease L) (RNase L) (Ribonuclease 4) 299203 7674622 PERMA_0326 Persephonella marina EX-H1 2-5A-dependent ribonuclease (2-5A-dependent RNase)(Ribonuclease L) (RNase L) (Ribonuclease 4) YP_002730119.1 298835 R 123214 CDS YP_002730120.1 225849886 7675721 299279..299974 1 NC_012440.1 identified by match to protein family HMM TIGR00613; DNA repair protein RecO 299974 recO 7675721 recO Persephonella marina EX-H1 DNA repair protein RecO YP_002730120.1 299279 D 123214 CDS YP_002730121.1 225849887 7674808 complement(299993..300646) 1 NC_012440.1 hypothetical protein 300646 7674808 PERMA_0328 Persephonella marina EX-H1 hypothetical protein YP_002730121.1 299993 R 123214 CDS YP_002730122.1 225849888 7674412 complement(300664..301563) 1 NC_012440.1 identified by match to protein family HMM PF06745; ATPase, RecA-superfamily 301563 7674412 PERMA_0329 Persephonella marina EX-H1 ATPase, RecA-superfamily YP_002730122.1 300664 R 123214 CDS YP_002730123.1 225849889 7674442 complement(301631..301975) 1 NC_012440.1 identified by match to protein family HMM PF01242; 6-pyruvoyl tetrahydrobiopterin synthase 301975 7674442 PERMA_0330 Persephonella marina EX-H1 6-pyruvoyl tetrahydrobiopterin synthase YP_002730123.1 301631 R 123214 CDS YP_002730124.1 225849890 7676124 complement(301983..302474) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 302474 7676124 PERMA_0331 Persephonella marina EX-H1 hypothetical protein YP_002730124.1 301983 R 123214 CDS YP_002730125.1 225849891 7674436 complement(302474..302611) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 302611 7674436 PERMA_0332 Persephonella marina EX-H1 hypothetical protein YP_002730125.1 302474 R 123214 CDS YP_002730126.1 225849892 7675741 302923..304512 1 NC_012440.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 304512 serA 7675741 serA Persephonella marina EX-H1 D-3-phosphoglycerate dehydrogenase YP_002730126.1 302923 D 123214 CDS YP_002730127.1 225849893 7675662 304527..305636 1 NC_012440.1 identified by match to protein family HMM PF01658; match to protein family HMM PF07994; Myo-inositol-1-phosphate synthase 305636 7675662 PERMA_0334 Persephonella marina EX-H1 Myo-inositol-1-phosphate synthase YP_002730127.1 304527 D 123214 CDS YP_002730128.1 225849894 7674380 305657..306427 1 NC_012440.1 hypothetical protein 306427 7674380 PERMA_0335 Persephonella marina EX-H1 hypothetical protein YP_002730128.1 305657 D 123214 CDS YP_002730129.1 225849895 7675656 complement(306450..306635) 1 NC_012440.1 identified by match to protein family HMM PF01361; match to protein family HMM TIGR00013; hypothetical protein 306635 7675656 PERMA_0336 Persephonella marina EX-H1 hypothetical protein YP_002730129.1 306450 R 123214 CDS YP_002730130.1 225849896 7676112 complement(306637..307992) 1 NC_012440.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; nitrogen assimilation regulatory protein NtrX 307992 7676112 PERMA_0337 Persephonella marina EX-H1 nitrogen assimilation regulatory protein NtrX YP_002730130.1 306637 R 123214 CDS YP_002730131.1 225849897 7674884 complement(308018..309097) 1 NC_012440.1 identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492; alanine racemase 309097 alr 7674884 alr Persephonella marina EX-H1 alanine racemase YP_002730131.1 308018 R 123214 CDS YP_002730132.1 225849898 7675760 309228..309584 1 NC_012440.1 identified by match to protein family HMM PF00403; copper-transporting atpase Ran1 (protein responsive toantagonist 1) 309584 7675760 PERMA_0339 Persephonella marina EX-H1 copper-transporting atpase Ran1 (protein responsive toantagonist 1) YP_002730132.1 309228 D 123214 CDS YP_002730133.1 225849899 7675565 309692..311515 1 NC_012440.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 311515 7675565 PERMA_0340 Persephonella marina EX-H1 copper-translocating P-type ATPase YP_002730133.1 309692 D 123214 CDS YP_002730134.1 225849900 7674532 311517..312230 1 NC_012440.1 identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase 312230 7674532 PERMA_0341 Persephonella marina EX-H1 glycerophosphoryl diester phosphodiesterase YP_002730134.1 311517 D 123214 CDS YP_002730135.1 225849901 7675375 312273..313418 1 NC_012440.1 identified by match to protein family HMM PF00266; soluble hydrogenase 42 kDsubunit A (Tritium exchangesubunit) 313418 7675375 PERMA_0342 Persephonella marina EX-H1 soluble hydrogenase 42 kDsubunit A (Tritium exchangesubunit) YP_002730135.1 312273 D 123214 CDS YP_002730136.1 225849902 7675829 313436..314074 1 NC_012440.1 identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 314074 7675829 PERMA_0343 Persephonella marina EX-H1 phosphoglycerate mutase family protein YP_002730136.1 313436 D 123214 CDS YP_002730137.1 225849903 7674824 314085..315344 1 NC_012440.1 identified by match to protein family HMM PF00587; histidyl-tRNA synthetase 315344 7674824 PERMA_0344 Persephonella marina EX-H1 histidyl-tRNA synthetase YP_002730137.1 314085 D 123214 CDS YP_002730138.1 225849904 7675470 315384..315872 1 NC_012440.1 identified by match to protein family HMM PF00254; peptidyl-prolyl cis-trans isomerase, fkbp-type 315872 7675470 PERMA_0345 Persephonella marina EX-H1 peptidyl-prolyl cis-trans isomerase, fkbp-type YP_002730138.1 315384 D 123214 CDS YP_002730139.1 225849905 7675322 complement(315888..317024) 1 NC_012440.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00238; L-lysine 2,3-aminomutase (KAM) (LAM) 317024 7675322 PERMA_0346 Persephonella marina EX-H1 L-lysine 2,3-aminomutase (KAM) (LAM) YP_002730139.1 315888 R 123214 CDS YP_002730140.1 225849906 7674995 complement(317025..317435) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 317435 7674995 PERMA_0347 Persephonella marina EX-H1 hypothetical protein YP_002730140.1 317025 R 123214 CDS YP_002730141.1 225849907 7676005 317513..317953 1 NC_012440.1 identified by match to protein family HMM TIGR00725; hypothetical protein 317953 7676005 PERMA_0349 Persephonella marina EX-H1 hypothetical protein YP_002730141.1 317513 D 123214 CDS YP_002730142.1 225849908 7675998 318208..318552 1 NC_012440.1 identified by match to protein family HMM PF01155; match to protein family HMM TIGR00100; hydrogenase nickel insertion protein HypA 318552 hypA 7675998 hypA Persephonella marina EX-H1 hydrogenase nickel insertion protein HypA YP_002730142.1 318208 D 123214 CDS YP_002730143.1 225849909 7675046 complement(318553..319968) 1 NC_012440.1 hypothetical protein 319968 7675046 PERMA_0351 Persephonella marina EX-H1 hypothetical protein YP_002730143.1 318553 R 123214 CDS YP_002730144.1 225849910 7675726 complement(319985..322117) 1 NC_012440.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 322117 7675726 PERMA_0352 Persephonella marina EX-H1 TonB-dependent receptor YP_002730144.1 319985 R 123214 CDS YP_002730145.1 225849911 7674555 complement(322303..322854) 1 NC_012440.1 hypothetical protein 322854 7674555 PERMA_0353 Persephonella marina EX-H1 hypothetical protein YP_002730145.1 322303 R 123214 CDS YP_002730146.1 225849912 7675435 complement(322864..323670) 1 NC_012440.1 identified by match to protein family HMM PF06230; hypothetical protein 323670 7675435 PERMA_0354 Persephonella marina EX-H1 hypothetical protein YP_002730146.1 322864 R 123214 CDS YP_002730147.1 225849913 7675657 complement(323667..324464) 1 NC_012440.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01852; acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase 324464 lpxA 7675657 lpxA Persephonella marina EX-H1 acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase YP_002730147.1 323667 R 123214 CDS YP_002730148.1 225849914 7674861 complement(324474..324791) 1 NC_012440.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 324791 trxA 7674861 trxA Persephonella marina EX-H1 thioredoxin YP_002730148.1 324474 R 123214 CDS YP_002730149.1 225849915 7674414 complement(324795..325106) 1 NC_012440.1 identified by match to protein family HMM PF01022; transcriptional regulator, ArsR family 325106 7674414 PERMA_0357 Persephonella marina EX-H1 transcriptional regulator, ArsR family YP_002730149.1 324795 R 123214 CDS YP_002730150.1 225849916 7675547 complement(325242..326126) 1 NC_012440.1 identified by match to protein family HMM PF02754; succinate dehydrogenase, subunit C 326126 7675547 PERMA_0358 Persephonella marina EX-H1 succinate dehydrogenase, subunit C YP_002730150.1 325242 R 123214 CDS YP_002730151.1 225849917 7675701 complement(326126..327190) 1 NC_012440.1 identified by match to protein family HMM PF00111; match to protein family HMM TIGR00384; fumarate reductase, iron-sulfur subunit 327190 7675701 PERMA_0359 Persephonella marina EX-H1 fumarate reductase, iron-sulfur subunit YP_002730151.1 326126 R 123214 CDS YP_002730152.1 225849918 7675737 complement(327330..327716) 1 NC_012440.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 327716 queF 7675737 queF Persephonella marina EX-H1 7-cyano-7-deazaguanine reductase YP_002730152.1 327330 R 123214 CDS YP_002730153.1 225849919 7675700 complement(327718..328590) 1 NC_012440.1 identified by match to protein family HMM PF00348; geranyltranstransferase (Farnesyl-diphosphate synthase) 328590 7675700 PERMA_0361 Persephonella marina EX-H1 geranyltranstransferase (Farnesyl-diphosphate synthase) YP_002730153.1 327718 R 123214 CDS YP_002730154.1 225849920 7675646 complement(328591..328941) 1 NC_012440.1 identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252; hypothetical protein 328941 7675646 PERMA_0362 Persephonella marina EX-H1 hypothetical protein YP_002730154.1 328591 R 123214 CDS YP_002730155.1 225849921 7674994 complement(328950..329546) 1 NC_012440.1 identified by match to protein family HMM PF01351; ribonuclease HII 329546 rnhB 7674994 rnhB Persephonella marina EX-H1 ribonuclease HII YP_002730155.1 328950 R 123214 CDS YP_002730156.1 225849922 7675908 complement(329551..329949) 1 NC_012440.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 329949 rplS 7675908 rplS Persephonella marina EX-H1 50S ribosomal protein L19 YP_002730156.1 329551 R 123214 CDS YP_002730157.1 225849923 7674241 complement(330015..330497) 1 NC_012440.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; bacterioferritin comigratory protein BCP 330497 7674241 PERMA_0365 Persephonella marina EX-H1 bacterioferritin comigratory protein BCP YP_002730157.1 330015 R 123214 CDS YP_002730158.1 225849924 7675621 complement(330509..331138) 1 NC_012440.1 identified by match to protein family HMM PF01502; match to protein family HMM PF01503; match to protein family HMM TIGR03188; histidine biosynthesis bifunctional protein hisIE 331138 7675621 PERMA_0366 Persephonella marina EX-H1 histidine biosynthesis bifunctional protein hisIE YP_002730158.1 330509 R 123214 CDS YP_002730159.1 225849925 7674537 331225..333120 1 NC_012440.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 333120 dxs 7674537 dxs Persephonella marina EX-H1 1-deoxy-D-xylulose-5-phosphate synthase YP_002730159.1 331225 D 123214 CDS YP_002730160.1 225849926 7674693 complement(333117..333539) 1 NC_012440.1 hypothetical protein 333539 7674693 PERMA_0367 Persephonella marina EX-H1 hypothetical protein YP_002730160.1 333117 R 123214 CDS YP_002730161.1 225849927 7674893 333688..334275 1 NC_012440.1 identified by match to protein family HMM PF02577; hypothetical protein 334275 7674893 PERMA_0369 Persephonella marina EX-H1 hypothetical protein YP_002730161.1 333688 D 123214 CDS YP_002730162.1 225849928 7676111 complement(334287..335708) 1 NC_012440.1 identified by match to protein family HMM PF00023; pfs, nacht and ankyrin domain protein 335708 7676111 PERMA_0370 Persephonella marina EX-H1 pfs, nacht and ankyrin domain protein YP_002730162.1 334287 R 123214 CDS YP_002730163.1 225849929 7674879 complement(335680..336486) 1 NC_012440.1 identified by match to protein family HMM PF00023; MHC_I C-terminus family protein 336486 7674879 PERMA_0371 Persephonella marina EX-H1 MHC_I C-terminus family protein YP_002730163.1 335680 R 123214 CDS YP_002730164.1 225849930 7675398 complement(336488..337204) 1 NC_012440.1 identified by match to protein family HMM PF00023; ankyrin domain protein 337204 7675398 PERMA_0372 Persephonella marina EX-H1 ankyrin domain protein YP_002730164.1 336488 R 123214 CDS YP_002730165.1 225849931 7674591 complement(337275..338288) 1 NC_012440.1 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296; aspartate-semialdehyde dehydrogenase 338288 asd 7674591 asd Persephonella marina EX-H1 aspartate-semialdehyde dehydrogenase YP_002730165.1 337275 R 123214 CDS YP_002730166.1 225849932 7676073 338349..338537 1 NC_012440.1 identified by Glimmer3; hypothetical protein 338537 7676073 PERMA_0374 Persephonella marina EX-H1 hypothetical protein YP_002730166.1 338349 D 123214 CDS YP_002730167.1 225849933 7675629 338547..339233 1 NC_012440.1 identified by match to protein family HMM PF07719; match to protein family HMM PF07720; hypothetical protein 339233 7675629 PERMA_0375 Persephonella marina EX-H1 hypothetical protein YP_002730167.1 338547 D 123214 CDS YP_002730168.1 225849934 7674319 339230..339931 1 NC_012440.1 identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055; di-trans, poly-cis-decaprenylcistransferase 339931 uppS 7674319 uppS Persephonella marina EX-H1 di-trans, poly-cis-decaprenylcistransferase YP_002730168.1 339230 D 123214 CDS YP_002730169.1 225849935 7675108 339928..340701 1 NC_012440.1 identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase 340701 cdsA_1 7675108 cdsA_1 Persephonella marina EX-H1 phosphatidate cytidylyltransferase YP_002730169.1 339928 D 123214 CDS YP_002730170.1 225849936 7674245 complement(340698..341810) 1 NC_012440.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423; match to protein family HMM TIGR03699; menaquinone biosynthesis protein, family 341810 7674245 PERMA_0377 Persephonella marina EX-H1 menaquinone biosynthesis protein, family YP_002730170.1 340698 R 123214 CDS YP_002730171.1 225849937 7675486 complement(341877..342725) 1 NC_012440.1 lipoprotein 342725 7675486 PERMA_0379 Persephonella marina EX-H1 lipoprotein YP_002730171.1 341877 R 123214 CDS YP_002730172.1 225849938 7675237 342821..344341 1 NC_012440.1 identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368; Mg chelatase family protein 344341 7675237 PERMA_0380 Persephonella marina EX-H1 Mg chelatase family protein YP_002730172.1 342821 D 123214 CDS YP_002730173.1 225849939 7674625 344365..345129 1 NC_012440.1 identified by match to protein family HMM PF02673; match to protein family HMM TIGR00753; UDP-diphosphatase 345129 uppP 7674625 uppP Persephonella marina EX-H1 UDP-diphosphatase YP_002730173.1 344365 D 123214 CDS YP_002730174.1 225849940 7674502 complement(345267..345467) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 345467 7674502 PERMA_0382 Persephonella marina EX-H1 hypothetical protein YP_002730174.1 345267 R 123214 CDS YP_002730175.1 225849941 7674261 complement(345522..346445) 1 NC_012440.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212; radical SAM protein, family 346445 7674261 PERMA_0384 Persephonella marina EX-H1 radical SAM protein, family YP_002730175.1 345522 R 123214 CDS YP_002730176.1 225849942 7674427 complement(346498..348564) 1 NC_012440.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase/phosphodiesterase 348564 7674427 PERMA_0385 Persephonella marina EX-H1 diguanylate cyclase/phosphodiesterase YP_002730176.1 346498 R 123214 CDS YP_002730177.1 225849943 7675913 complement(348561..349481) 1 NC_012440.1 identified by match to protein family HMM PF03150; cytochrome c551 peroxidase (cytochrome cperoxidase) 349481 7675913 PERMA_0386 Persephonella marina EX-H1 cytochrome c551 peroxidase (cytochrome cperoxidase) YP_002730177.1 348561 R 123214 CDS YP_002730178.1 225849944 7675424 complement(349587..350660) 1 NC_012440.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 350660 leuB 7675424 leuB Persephonella marina EX-H1 3-isopropylmalate dehydrogenase YP_002730178.1 349587 R 123214 CDS YP_002730179.1 225849945 7674754 complement(350684..351511) 1 NC_012440.1 identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; nicotinate-nucleotide diphosphorylase (carboxylating) 351511 nadC 7674754 nadC Persephonella marina EX-H1 nicotinate-nucleotide diphosphorylase (carboxylating) YP_002730179.1 350684 R 123214 CDS YP_002730180.1 225849946 7674346 complement(351521..351949) 1 NC_012440.1 identified by match to protein family HMM PF03653; match to protein family HMM TIGR00701; hypothetical protein 351949 7674346 PERMA_0389 Persephonella marina EX-H1 hypothetical protein YP_002730180.1 351521 R 123214 CDS YP_002730181.1 225849947 7675692 352064..352210 1 NC_012440.1 hypothetical protein 352210 7675692 PERMA_0390 Persephonella marina EX-H1 hypothetical protein YP_002730181.1 352064 D 123214 CDS YP_002730182.1 225849948 7674263 complement(352235..352576) 1 NC_012440.1 identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; iron-sulfur cluster assembly accessory protein 352576 7674263 PERMA_0391 Persephonella marina EX-H1 iron-sulfur cluster assembly accessory protein YP_002730182.1 352235 R 123214 CDS YP_002730183.1 225849949 7675069 complement(352644..353471) 1 NC_012440.1 identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706; signal peptide peptidase SppA, 36K type 353471 sppA 7675069 sppA Persephonella marina EX-H1 signal peptide peptidase SppA, 36K type YP_002730183.1 352644 R 123214 CDS YP_002730184.1 225849950 7674612 complement(353486..353788) 1 NC_012440.1 identified by match to protein family HMM PF02033; match to protein family HMM TIGR00082; ribosome-binding factor A 353788 rbfA 7674612 rbfA Persephonella marina EX-H1 ribosome-binding factor A YP_002730184.1 353486 R 123214 CDS YP_002730185.1 225849951 7674447 complement(353785..354066) 1 NC_012440.1 identified by match to protein family HMM PF04456; YlxP 354066 7674447 PERMA_0394 Persephonella marina EX-H1 YlxP YP_002730185.1 353785 R 123214 CDS YP_002730186.1 225849952 7676070 complement(354102..354899) 1 NC_012440.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; hydrolase, TatD family 354899 7676070 PERMA_0395 Persephonella marina EX-H1 hydrolase, TatD family YP_002730186.1 354102 R 123214 CDS YP_002730187.1 225849953 7674205 complement(354892..356775) 1 NC_012440.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; cell division protease FtsH 356775 7674205 PERMA_0396 Persephonella marina EX-H1 cell division protease FtsH YP_002730187.1 354892 R 123214 CDS YP_002730188.1 225849954 7675952 complement(356776..358134) 1 NC_012440.1 identified by match to protein family HMM PF01171; match to protein family HMM PF06508; match to protein family HMM PF09179; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433; tRNA(Ile)-lysidine synthase 358134 7675952 PERMA_0397 Persephonella marina EX-H1 tRNA(Ile)-lysidine synthase YP_002730188.1 356776 R 123214 CDS YP_002730189.1 225849955 7674927 complement(358255..358533) 1 NC_012440.1 identified by match to protein family HMM PF01649; match to protein family HMM TIGR00029; ribosomal protein S20 358533 rpsT 7674927 rpsT Persephonella marina EX-H1 ribosomal protein S20 YP_002730189.1 358255 R 123214 CDS YP_002730190.1 225849956 7674803 358697..359899 1 NC_012440.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; S-adenosylmethionine synthetase 359899 7674803 PERMA_0400 Persephonella marina EX-H1 S-adenosylmethionine synthetase YP_002730190.1 358697 D 123214 CDS YP_002730191.1 225849957 7675924 360007..362001 1 NC_012440.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF08376; methyl-accepting chemotaxis protein 362001 7675924 PERMA_0401 Persephonella marina EX-H1 methyl-accepting chemotaxis protein YP_002730191.1 360007 D 123214 CDS YP_002730192.1 225849958 7674179 complement(362002..365496) 1 NC_012440.1 catalyzes the magnesium and ATP-dependent positive supercoiling of DNA; contains helicase and topoisomerase domains; reverse gyrase 365496 rgy 7674179 rgy Persephonella marina EX-H1 reverse gyrase YP_002730192.1 362002 R 123214 CDS YP_002730193.1 225849959 7676062 complement(365570..366574) 1 NC_012440.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase family protein 366574 7676062 PERMA_0403 Persephonella marina EX-H1 NAD-dependent epimerase/dehydratase family protein YP_002730193.1 365570 R 123214 CDS YP_002730194.1 225849960 7674873 366631..367740 1 NC_012440.1 identified by match to protein family HMM PF00534; glucosyl transferase I 367740 7674873 PERMA_0404 Persephonella marina EX-H1 glucosyl transferase I YP_002730194.1 366631 D 123214 CDS YP_002730195.1 225849961 7675959 367783..368745 1 NC_012440.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDsubunit As and two PyrK subunits; dihydroorotate dehydrogenase 1B 368745 7675959 PERMA_0405 Persephonella marina EX-H1 dihydroorotate dehydrogenase 1B YP_002730195.1 367783 D 123214 CDS YP_002730196.1 225849962 7675860 368746..370731 1 NC_012440.1 identified by match to protein family HMM PF01432; oligopeptidase A 370731 7675860 PERMA_0406 Persephonella marina EX-H1 oligopeptidase A YP_002730196.1 368746 D 123214 CDS YP_002730197.1 225849963 7674343 370732..371058 1 NC_012440.1 identified by match to protein family HMM PF03992; antibiotic biosynthesis monooxygenase 371058 7674343 PERMA_0407 Persephonella marina EX-H1 antibiotic biosynthesis monooxygenase YP_002730197.1 370732 D 123214 CDS YP_002730198.1 225849964 7675806 371116..372288 1 NC_012440.1 identified by match to protein family HMM PF00016; ribulose bisphosphate carboxylase (RuBisCO) 372288 7675806 PERMA_0408 Persephonella marina EX-H1 ribulose bisphosphate carboxylase (RuBisCO) YP_002730198.1 371116 D 123214 CDS YP_002730199.1 225849965 7676059 372285..372935 1 NC_012440.1 identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01489; 2-hydroxy-3-keto-5-methylthiopentenyl-1- phosphate phosphatase (HK-MTPenyl-1-P phosphatase) 372935 7676059 PERMA_0409 Persephonella marina EX-H1 2-hydroxy-3-keto-5-methylthiopentenyl-1- phosphate phosphatase (HK-MTPenyl-1-P phosphatase) YP_002730199.1 372285 D 123214 CDS YP_002730200.1 225849966 7674311 373086..373847 1 NC_012440.1 identified by match to protein family HMM PF00034; cytochrome c, class I 373847 7674311 PERMA_0410 Persephonella marina EX-H1 cytochrome c, class I YP_002730200.1 373086 D 123214 CDS YP_002730201.1 225849967 7676163 373863..375254 1 NC_012440.1 identified by match to protein family HMM PF00115; cytochrome c oxidase, subunit I 375254 7676163 PERMA_0411 Persephonella marina EX-H1 cytochrome c oxidase, subunit I YP_002730201.1 373863 D 123214 CDS YP_002730202.1 225849968 7675712 375269..376000 1 NC_012440.1 identified by match to protein family HMM PF02433; cytochrome c oxidase, Cbb3-type, subunit II 376000 7675712 PERMA_0412 Persephonella marina EX-H1 cytochrome c oxidase, Cbb3-type, subunit II YP_002730202.1 375269 D 123214 CDS YP_002730203.1 225849969 7674827 376057..376353 1 NC_012440.1 identified by Glimmer3; hypothetical protein 376353 7674827 PERMA_0413 Persephonella marina EX-H1 hypothetical protein YP_002730203.1 376057 D 123214 CDS YP_002730204.1 225849970 7675936 376353..376577 1 NC_012440.1 cytochrome c 376577 7675936 PERMA_0414 Persephonella marina EX-H1 cytochrome c YP_002730204.1 376353 D 123214 CDS YP_002730205.1 225849971 7675410 376782..377456 1 NC_012440.1 identified by match to protein family HMM PF01694; rhomboid family protein 377456 7675410 PERMA_0416 Persephonella marina EX-H1 rhomboid family protein YP_002730205.1 376782 D 123214 CDS YP_002730206.1 225849972 7674240 complement(377438..378298) 1 NC_012440.1 identified by match to protein family HMM PF00041; fibronectin type III domain protein 378298 7674240 PERMA_0415 Persephonella marina EX-H1 fibronectin type III domain protein YP_002730206.1 377438 R 123214 CDS YP_002730207.1 225849973 7674512 complement(378324..379112) 1 NC_012440.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 379112 kdsA 7674512 kdsA Persephonella marina EX-H1 2-dehydro-3-deoxyphosphooctonate aldolase YP_002730207.1 378324 R 123214 CDS YP_002730208.1 225849974 7675838 379215..379658 1 NC_012440.1 protein-glutamate O-methyltransferase 379658 7675838 PERMA_0418 Persephonella marina EX-H1 protein-glutamate O-methyltransferase YP_002730208.1 379215 D 123214 CDS YP_002730209.1 225849975 7676105 379752..380354 1 NC_012440.1 identified by match to protein family HMM PF02630; electron transport protein SCO1/SenC 380354 7676105 PERMA_0419 Persephonella marina EX-H1 electron transport protein SCO1/SenC YP_002730209.1 379752 D 123214 CDS YP_002730210.1 225849976 7675102 380380..380844 1 NC_012440.1 identified by match to protein family HMM PF01618; biopolymer transport protein ExbB 380844 7675102 PERMA_0420 Persephonella marina EX-H1 biopolymer transport protein ExbB YP_002730210.1 380380 D 123214 CDS YP_002730211.1 225849977 7675725 380844..381248 1 NC_012440.1 identified by match to protein family HMM PF02472; biopolymer transport protein ExbD 381248 7675725 PERMA_0421 Persephonella marina EX-H1 biopolymer transport protein ExbD YP_002730211.1 380844 D 123214 CDS YP_002730212.1 225849978 7675247 381250..382128 1 NC_012440.1 identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352; TonB family C- domain protein 382128 7675247 PERMA_0422 Persephonella marina EX-H1 TonB family C- domain protein YP_002730212.1 381250 D 123214 CDS YP_002730213.1 225849979 7674646 382130..382567 1 NC_012440.1 identified by match to protein family HMM PF00075; ribonuclease HI 382567 rnhA 7674646 rnhA Persephonella marina EX-H1 ribonuclease HI YP_002730213.1 382130 D 123214 CDS YP_002730214.1 225849980 7675968 382573..383916 1 NC_012440.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 383916 radA 7675968 radA Persephonella marina EX-H1 DNA repair protein RadA YP_002730214.1 382573 D 123214 CDS YP_002730215.1 225849981 7674333 383921..384571 1 NC_012440.1 identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758; uracil-DNA glycosylase family 4 protein 384571 7674333 PERMA_0425 Persephonella marina EX-H1 uracil-DNA glycosylase family 4 protein YP_002730215.1 383921 D 123214 CDS YP_002730216.1 225849982 7676144 384653..385345 1 NC_012440.1 identified by match to protein family HMM PF00215; match to protein family HMM TIGR01740; orotidine 5'-phosphate decarboxylase 385345 pyrF 7676144 pyrF Persephonella marina EX-H1 orotidine 5'-phosphate decarboxylase YP_002730216.1 384653 D 123214 CDS YP_002730217.1 225849983 7675568 385339..386643 1 NC_012440.1 identified by match to protein family HMM PF00309; match to protein family HMM PF04552; match to protein family HMM PF04963; match to protein family HMM TIGR02395; RNA polymerase sigma-54 factor 386643 rpoN 7675568 rpoN Persephonella marina EX-H1 RNA polymerase sigma-54 factor YP_002730217.1 385339 D 123214 CDS YP_002730218.1 225849984 7674640 386640..387206 1 NC_012440.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; sigma 54 modulation protein 387206 7674640 PERMA_0428 Persephonella marina EX-H1 sigma 54 modulation protein YP_002730218.1 386640 D 123214 CDS YP_002730219.1 225849985 7676079 387281..387733 1 NC_012440.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 387733 rplM 7676079 rplM Persephonella marina EX-H1 50S ribosomal protein L13 YP_002730219.1 387281 D 123214 CDS YP_002730220.1 225849986 7675167 387751..388179 1 NC_012440.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 388179 rpsI 7675167 rpsI Persephonella marina EX-H1 30S ribosomal protein S9 YP_002730220.1 387751 D 123214 CDS YP_002730221.1 225849987 7675279 388276..389292 1 NC_012440.1 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01850; N-acetyl-gamma-glutamyl-phosphate reductase 389292 argC 7675279 argC Persephonella marina EX-H1 N-acetyl-gamma-glutamyl-phosphate reductase YP_002730221.1 388276 D 123214 CDS YP_002730222.1 225849988 7675224 389289..390242 1 NC_012440.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR02198; bifunctional protein RfaE, domain I 390242 rfaE_1 7675224 rfaE_1 Persephonella marina EX-H1 bifunctional protein RfaE, domain I YP_002730222.1 389289 D 123214 CDS YP_002730223.1 225849989 7674317 390279..390521 1 NC_012440.1 identified by match to protein family HMM PF02700; match to protein family HMM TIGR00302; phosphoribosylformylglycinamidine synthase, PurS protein 390521 purS 7674317 purS Persephonella marina EX-H1 phosphoribosylformylglycinamidine synthase, PurS protein YP_002730223.1 390279 D 123214 CDS YP_002730224.1 225849990 7676033 390532..391218 1 NC_012440.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 391218 purQ 7676033 purQ Persephonella marina EX-H1 phosphoribosylformylglycinamidine synthase I YP_002730224.1 390532 D 123214 CDS YP_002730225.1 225849991 7676158 complement(391199..391663) 1 NC_012440.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; thiol-disulfide oxidoreductase ResA 391663 7676158 PERMA_0434 Persephonella marina EX-H1 thiol-disulfide oxidoreductase ResA YP_002730225.1 391199 R 123214 CDS YP_002730226.1 225849992 7674664 391720..392751 1 NC_012440.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 392751 7674664 PERMA_0437 Persephonella marina EX-H1 deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_002730226.1 391720 D 123214 CDS YP_002730227.1 225849993 7674738 complement(392748..393230) 1 NC_012440.1 hypothetical protein 393230 7674738 PERMA_0436 Persephonella marina EX-H1 hypothetical protein YP_002730227.1 392748 R 123214 CDS YP_002730228.1 225849994 7675442 complement(393227..395710) 1 NC_012440.1 identified by match to protein family HMM PF00577; match to protein family HMM PF05036; P pilus assembly, fimbrial Usher protein 395710 7675442 PERMA_0438 Persephonella marina EX-H1 P pilus assembly, fimbrial Usher protein YP_002730228.1 393227 R 123214 CDS YP_002730229.1 225849995 7675596 complement(395761..395883) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 395883 7675596 PERMA_0439 Persephonella marina EX-H1 hypothetical protein YP_002730229.1 395761 R 123214 CDS YP_002730230.1 225849996 7676183 complement(395894..396709) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 396709 7676183 PERMA_0440 Persephonella marina EX-H1 hypothetical protein YP_002730230.1 395894 R 123214 CDS YP_002730231.1 225849997 7674970 complement(396703..397167) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 397167 7674970 PERMA_0441 Persephonella marina EX-H1 hypothetical protein YP_002730231.1 396703 R 123214 CDS YP_002730232.1 225849998 7674734 complement(397227..397688) 1 NC_012440.1 identified by match to protein family HMM PF05229; VCBS protein 397688 7674734 PERMA_0442 Persephonella marina EX-H1 VCBS protein YP_002730232.1 397227 R 123214 CDS YP_002730233.1 225849999 7674844 complement(397816..398100) 1 NC_012440.1 transposase 398100 7674844 PERMA_0443 Persephonella marina EX-H1 transposase YP_002730233.1 397816 R 123214 CDS YP_002730234.1 225850000 7675709 398301..399227 1 NC_012440.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 399227 hemC 7675709 hemC Persephonella marina EX-H1 porphobilinogen deaminase YP_002730234.1 398301 D 123214 CDS YP_002730235.1 225850001 7675542 399234..400607 1 NC_012440.1 identified by match to protein family HMM PF02366; hypothetical protein 400607 7675542 PERMA_0445 Persephonella marina EX-H1 hypothetical protein YP_002730235.1 399234 D 123214 CDS YP_002730236.1 225850002 7675539 400604..402319 1 NC_012440.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter 402319 7675539 PERMA_0446 Persephonella marina EX-H1 ABC transporter YP_002730236.1 400604 D 123214 CDS YP_002730237.1 225850003 7675497 402352..403434 1 NC_012440.1 hypothetical protein 403434 7675497 PERMA_0447 Persephonella marina EX-H1 hypothetical protein YP_002730237.1 402352 D 123214 CDS YP_002730238.1 225850004 7674781 403427..403972 1 NC_012440.1 identified by match to protein family HMM PF01569; PAP2 superfamily protein 403972 7674781 PERMA_0449 Persephonella marina EX-H1 PAP2 superfamily protein YP_002730238.1 403427 D 123214 CDS YP_002730239.1 225850005 7676037 complement(403947..404687) 1 NC_012440.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 404687 pdxJ 7676037 pdxJ Persephonella marina EX-H1 pyridoxine 5'-phosphate synthase YP_002730239.1 403947 R 123214 CDS YP_002730240.1 225850006 7675195 404774..405958 1 NC_012440.1 identified by match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase 405958 7675195 PERMA_0450 Persephonella marina EX-H1 N-acetylmuramoyl-L-alanine amidase YP_002730240.1 404774 D 123214 CDS YP_002730241.1 225850007 7674573 405958..406725 1 NC_012440.1 identified by match to protein family HMM PF03309; match to protein family HMM TIGR00671; type III pantothenate kinase (Pantothenic acid kinase)(PanK-III) 406725 7674573 PERMA_0451 Persephonella marina EX-H1 type III pantothenate kinase (Pantothenic acid kinase)(PanK-III) YP_002730241.1 405958 D 123214 CDS YP_002730242.1 225850008 7675477 406798..406917 1 NC_012440.1 identified by Glimmer3; hypothetical protein 406917 7675477 PERMA_0452 Persephonella marina EX-H1 hypothetical protein YP_002730242.1 406798 D 123214 CDS YP_002730243.1 225850009 7674253 406927..407184 1 NC_012440.1 identified by Glimmer3; hypothetical protein 407184 7674253 PERMA_0453 Persephonella marina EX-H1 hypothetical protein YP_002730243.1 406927 D 123214 CDS YP_002730244.1 225850010 7675242 407184..407993 1 NC_012440.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 407993 dapB 7675242 dapB Persephonella marina EX-H1 dihydrodipicolinate reductase YP_002730244.1 407184 D 123214 CDS YP_002730245.1 225850011 7674606 407997..408239 1 NC_012440.1 ATP synthase protein I 408239 7674606 PERMA_0456 Persephonella marina EX-H1 ATP synthase protein I YP_002730245.1 407997 D 123214 CDS YP_002730246.1 225850012 7674594 complement(408236..409219) 1 NC_012440.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; phosphoesterase, RecJ domain protein 409219 7674594 PERMA_0455 Persephonella marina EX-H1 phosphoesterase, RecJ domain protein YP_002730246.1 408236 R 123214 CDS YP_002730247.1 225850013 7675128 complement(409233..409880) 1 NC_012440.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III 409880 nth 7675128 nth Persephonella marina EX-H1 endonuclease III YP_002730247.1 409233 R 123214 CDS YP_002730248.1 225850014 7674435 complement(409882..410772) 1 NC_012440.1 identified by match to protein family HMM PF01367; match to protein family HMM PF02739; DNA polymerase I 410772 7674435 PERMA_0458 Persephonella marina EX-H1 DNA polymerase I YP_002730248.1 409882 R 123214 CDS YP_002730249.1 225850015 7674652 complement(410781..411566) 1 NC_012440.1 identified by match to protein family HMM PF01551; NlpD fragment 411566 7674652 PERMA_0459 Persephonella marina EX-H1 NlpD fragment YP_002730249.1 410781 R 123214 CDS YP_002730250.1 225850016 7674907 complement(411571..412548) 1 NC_012440.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 412548 hemB 7674907 hemB Persephonella marina EX-H1 delta-aminolevulinic acid dehydratase YP_002730250.1 411571 R 123214 CDS YP_002730251.1 225850017 7675994 complement(412594..413298) 1 NC_012440.1 identified by match to protein family HMM PF04452; match to protein family HMM TIGR00046; ribosomal RNA small subunit methyltransferase E (16S rRNAm3U1498 methyltransferase) 413298 7675994 PERMA_0461 Persephonella marina EX-H1 ribosomal RNA small subunit methyltransferase E (16S rRNAm3U1498 methyltransferase) YP_002730251.1 412594 R 123214 CDS YP_002730252.1 225850018 7675619 complement(413298..414116) 1 NC_012440.1 identified by match to protein family HMM PF00950; ABC transporter 414116 7675619 PERMA_0462 Persephonella marina EX-H1 ABC transporter YP_002730252.1 413298 R 123214 CDS YP_002730253.1 225850019 7674673 complement(414124..414891) 1 NC_012440.1 identified by match to protein family HMM PF00005; manganese transport system ATP-binding protein MntA 414891 7674673 PERMA_0463 Persephonella marina EX-H1 manganese transport system ATP-binding protein MntA YP_002730253.1 414124 R 123214 CDS YP_002730254.1 225850020 7675002 complement(414888..415913) 1 NC_012440.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; alcohol dehydrogenase 415913 7675002 PERMA_0464 Persephonella marina EX-H1 alcohol dehydrogenase YP_002730254.1 414888 R 123214 CDS YP_002730255.1 225850021 7676002 complement(415915..418080) 1 NC_012440.1 identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; ferrous iron transport protein B 418080 feoB 7676002 feoB Persephonella marina EX-H1 ferrous iron transport protein B YP_002730255.1 415915 R 123214 CDS YP_002730256.1 225850022 7675338 complement(418070..418303) 1 NC_012440.1 identified by match to protein family HMM PF04023; hypothetical protein 418303 7675338 PERMA_0466 Persephonella marina EX-H1 hypothetical protein YP_002730256.1 418070 R 123214 CDS YP_002730257.1 225850023 7674979 complement(418389..419069) 1 NC_012440.1 identified by match to protein family HMM PF02163; membrane-associated zinc metalloprotease 419069 7674979 PERMA_0467 Persephonella marina EX-H1 membrane-associated zinc metalloprotease YP_002730257.1 418389 R 123214 CDS YP_002730258.1 225850024 7675234 419149..420471 1 NC_012440.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143; udp-murnac-pentapeptide sythetase 420471 7675234 PERMA_0469 Persephonella marina EX-H1 udp-murnac-pentapeptide sythetase YP_002730258.1 419149 D 123214 CDS YP_002730259.1 225850025 7674192 complement(420446..421114) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 421114 7674192 PERMA_0468 Persephonella marina EX-H1 hypothetical protein YP_002730259.1 420446 R 123214 CDS YP_002730260.1 225850026 7674716 421179..422186 1 NC_012440.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I 422186 gap 7674716 gap Persephonella marina EX-H1 glyceraldehyde-3-phosphate dehydrogenase, type I YP_002730260.1 421179 D 123214 CDS YP_002730261.1 225850027 7676071 complement(422405..422674) 1 NC_012440.1 PIN domain protein 422674 7676071 PERMA_0471 Persephonella marina EX-H1 PIN domain protein YP_002730261.1 422405 R 123214 CDS YP_002730262.1 225850028 7676076 complement(422793..423104) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 423104 7676076 PERMA_0472 Persephonella marina EX-H1 hypothetical protein YP_002730262.1 422793 R 123214 CDS YP_002730263.1 225850029 7674602 complement(423217..424470) 1 NC_012440.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 424470 trpS 7674602 trpS Persephonella marina EX-H1 tryptophanyl-tRNA synthetase YP_002730263.1 423217 R 123214 CDS YP_002730264.1 225850030 7675077 424549..426999 1 NC_012440.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF09369; DEAD/DEAH box helicase 426999 7675077 PERMA_0475 Persephonella marina EX-H1 DEAD/DEAH box helicase YP_002730264.1 424549 D 123214 CDS YP_002730265.1 225850031 7675759 complement(426992..427840) 1 NC_012440.1 identified by match to protein family HMM PF02146; Sir2 family transcriptional regulator 427840 7675759 PERMA_0474 Persephonella marina EX-H1 Sir2 family transcriptional regulator YP_002730265.1 426992 R 123214 CDS YP_002730266.1 225850032 7674326 428614..429453 1 NC_012440.1 hypothetical protein 429453 7674326 PERMA_0476 Persephonella marina EX-H1 hypothetical protein YP_002730266.1 428614 D 123214 CDS YP_002730267.1 225850033 7675494 429875..430273 1 NC_012440.1 identified by Glimmer3; hypothetical protein 430273 7675494 PERMA_0477 Persephonella marina EX-H1 hypothetical protein YP_002730267.1 429875 D 123214 CDS YP_002730268.1 225850034 7674372 430260..430928 1 NC_012440.1 identified by Glimmer3; hypothetical protein 430928 7674372 PERMA_0478 Persephonella marina EX-H1 hypothetical protein YP_002730268.1 430260 D 123214 CDS YP_002730269.1 225850035 7675262 430938..431465 1 NC_012440.1 identified by match to protein family HMM PF01464; membrane-bound lytic murein transglycosylase C 431465 7675262 PERMA_0479 Persephonella marina EX-H1 membrane-bound lytic murein transglycosylase C YP_002730269.1 430938 D 123214 CDS YP_002730270.1 225850036 7674315 432076..432255 1 NC_012440.1 hypothetical protein 432255 7674315 PERMA_0480 Persephonella marina EX-H1 hypothetical protein YP_002730270.1 432076 D 123214 CDS YP_002730271.1 225850037 7675454 432292..434490 1 NC_012440.1 hypothetical protein 434490 7675454 PERMA_0481 Persephonella marina EX-H1 hypothetical protein YP_002730271.1 432292 D 123214 CDS YP_002730272.1 225850038 7674576 434862..434981 1 NC_012440.1 identified by Glimmer3; hypothetical protein 434981 7674576 PERMA_0482 Persephonella marina EX-H1 hypothetical protein YP_002730272.1 434862 D 123214 CDS YP_002730273.1 225850039 7675892 435281..438094 1 NC_012440.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; TPR repeat protein 438094 7675892 PERMA_0483 Persephonella marina EX-H1 TPR repeat protein YP_002730273.1 435281 D 123214 CDS YP_002730274.1 225850040 7674439 complement(438164..438448) 1 NC_012440.1 hypothetical protein 438448 7674439 PERMA_0484 Persephonella marina EX-H1 hypothetical protein YP_002730274.1 438164 R 123214 CDS YP_002730275.1 225850041 7675971 complement(439573..440193) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 440193 7675971 PERMA_0485 Persephonella marina EX-H1 hypothetical protein YP_002730275.1 439573 R 123214 CDS YP_002730276.1 225850042 7674552 complement(440318..440896) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 440896 7674552 PERMA_0486 Persephonella marina EX-H1 hypothetical protein YP_002730276.1 440318 R 123214 CDS YP_002730277.1 225850043 7674385 complement(440918..441655) 1 NC_012440.1 identified by match to protein family HMM PF02633; creatininase 441655 7674385 PERMA_0487 Persephonella marina EX-H1 creatininase YP_002730277.1 440918 R 123214 CDS YP_002730278.1 225850044 7675669 complement(441659..441964) 1 NC_012440.1 identified by match to protein family HMM PF00633; competence protein ComEA helix-hairpin-helix repeat protein 441964 7675669 PERMA_0488 Persephonella marina EX-H1 competence protein ComEA helix-hairpin-helix repeat protein YP_002730278.1 441659 R 123214 CDS YP_002730279.1 225850045 7675495 complement(441961..443118) 1 NC_012440.1 identified by match to protein family HMM PF09376; NurA domain superfamily 443118 7675495 PERMA_0489 Persephonella marina EX-H1 NurA domain superfamily YP_002730279.1 441961 R 123214 CDS YP_002730280.1 225850046 7675407 complement(443139..444161) 1 NC_012440.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 444161 obgE 7675407 obgE Persephonella marina EX-H1 GTPase ObgE YP_002730280.1 443139 R 123214 CDS YP_002730281.1 225850047 7675478 complement(444217..446163) 1 NC_012440.1 identified by match to protein family HMM PF01935; hypothetical protein 446163 7675478 PERMA_0491 Persephonella marina EX-H1 hypothetical protein YP_002730281.1 444217 R 123214 CDS YP_002730282.1 225850048 7674376 complement(446247..446441) 1 NC_012440.1 required for 70S ribosome assembly; 50S ribosomal protein L28 446441 rpmB 7674376 rpmB Persephonella marina EX-H1 50S ribosomal protein L28 YP_002730282.1 446247 R 123214 CDS YP_002730283.1 225850049 7675786 446578..447480 1 NC_012440.1 identified by match to protein family HMM PF00571; match to protein family HMM PF00990; match to protein family HMM TIGR00254; response regulator PleD 447480 7675786 PERMA_0493 Persephonella marina EX-H1 response regulator PleD YP_002730283.1 446578 D 123214 CDS YP_002730284.1 225850050 7675425 447526..448824 1 NC_012440.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125; hypothetical protein 448824 7675425 PERMA_0494 Persephonella marina EX-H1 hypothetical protein YP_002730284.1 447526 D 123214 CDS YP_002730285.1 225850051 7675251 448897..449958 1 NC_012440.1 identified by match to protein family HMM PF01008; match to protein family HMM TIGR00512; match to protein family HMM TIGR00524; S-methyl-5-thioribose-1-phosphate isomerase 449958 mtnA 7675251 mtnA Persephonella marina EX-H1 S-methyl-5-thioribose-1-phosphate isomerase YP_002730285.1 448897 D 123214 CDS YP_002730286.1 225850052 7676023 449960..450931 1 NC_012440.1 identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826; similar to protein aq_778; hypothetical protein 450931 7676023 PERMA_0496 Persephonella marina EX-H1 hypothetical protein YP_002730286.1 449960 D 123214 CDS YP_002730287.1 225850053 7675420 450932..452509 1 NC_012440.1 identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM PF07992; match to protein family HMM TIGR00551; L-aspartate oxidase 452509 nadB 7675420 nadB Persephonella marina EX-H1 L-aspartate oxidase YP_002730287.1 450932 D 123214 CDS YP_002730288.1 225850054 7675278 452674..453024 1 NC_012440.1 identified by match to protein family HMM PF00707; match to protein family HMM TIGR00168; translation initiation factor IF-3 453024 infC 7675278 infC Persephonella marina EX-H1 translation initiation factor IF-3 YP_002730288.1 452674 D 123214 CDS YP_002730289.1 225850055 7674805 453108..454280 1 NC_012440.1 identified by match to protein family HMM PF07992; sulfide quinone reductase 454280 7674805 PERMA_0499 Persephonella marina EX-H1 sulfide quinone reductase YP_002730289.1 453108 D 123214 CDS YP_002730290.1 225850056 7674755 complement(454281..454856) 1 NC_012440.1 identified by match to protein family HMM PF01066; CDP-alcohol phosphatidyltransferase 454856 7674755 PERMA_0500 Persephonella marina EX-H1 CDP-alcohol phosphatidyltransferase YP_002730290.1 454281 R 123214 CDS YP_002730291.1 225850057 7674321 complement(454858..455484) 1 NC_012440.1 identified by match to protein family HMM PF00697; N-(5'phosphoribosyl)anthranilate isomerase 455484 trpF 7674321 trpF Persephonella marina EX-H1 N-(5'phosphoribosyl)anthranilate isomerase YP_002730291.1 454858 R 123214 CDS YP_002730292.1 225850058 7675509 complement(455475..456071) 1 NC_012440.1 lipoprotein 456071 7675509 PERMA_0502 Persephonella marina EX-H1 lipoprotein YP_002730292.1 455475 R 123214 CDS YP_002730293.1 225850059 7674554 complement(456068..457747) 1 NC_012440.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 457747 7674554 PERMA_0503 Persephonella marina EX-H1 hypothetical protein YP_002730293.1 456068 R 123214 CDS YP_002730294.1 225850060 7675125 complement(457750..458637) 1 NC_012440.1 identified by match to protein family HMM PF00582; universal stress protein family protein 458637 7675125 PERMA_0504 Persephonella marina EX-H1 universal stress protein family protein YP_002730294.1 457750 R 123214 CDS YP_002730295.1 225850061 7675897 complement(458643..459140) 1 NC_012440.1 identified by match to protein family HMM PF00694; match to protein family HMM TIGR02084; match to protein family HMM TIGR02087; 3-isopropylmalate dehydratase, small subunit 459140 leuD 7675897 leuD Persephonella marina EX-H1 3-isopropylmalate dehydratase, small subunit YP_002730295.1 458643 R 123214 CDS YP_002730296.1 225850062 7675830 459252..460268 1 NC_012440.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826; glyoxylate reductase (Glycolate reductase) 460268 7675830 PERMA_0506 Persephonella marina EX-H1 glyoxylate reductase (Glycolate reductase) YP_002730296.1 459252 D 123214 CDS YP_002730297.1 225850063 7674702 460339..461070 1 NC_012440.1 identified by match to protein family HMM PF00106; match to protein family HMM PF07993; match to protein family HMM PF08659; match to protein family HMM TIGR01830; 3-oxoacyl-ACP reductase 461070 fabG 7674702 fabG Persephonella marina EX-H1 3-oxoacyl-ACP reductase YP_002730297.1 460339 D 123214 CDS YP_002730298.1 225850064 7674516 461109..461339 1 NC_012440.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 461339 acpP 7674516 acpP Persephonella marina EX-H1 acyl carrier protein YP_002730298.1 461109 D 123214 CDS YP_002730299.1 225850065 7674569 461346..462590 1 NC_012440.1 identified by match to protein family HMM PF00109; match to protein family HMM PF02801; match to protein family HMM TIGR03150; 3-ketoacyl-ACP synthase II 462590 fabF 7674569 fabF Persephonella marina EX-H1 3-ketoacyl-ACP synthase II YP_002730299.1 461346 D 123214 CDS YP_002730300.1 225850066 7675506 462580..463329 1 NC_012440.1 identified by match to protein family HMM PF00035; match to protein family HMM PF00636; match to protein family HMM TIGR02191; ribonuclease III 463329 rnc 7675506 rnc Persephonella marina EX-H1 ribonuclease III YP_002730300.1 462580 D 123214 CDS YP_002730301.1 225850067 7674310 complement(463326..464888) 1 NC_012440.1 identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase family protein 464888 7674310 PERMA_0510 Persephonella marina EX-H1 dolichyl-phosphate-mannose-protein mannosyltransferase family protein YP_002730301.1 463326 R 123214 CDS YP_002730302.1 225850068 7674924 complement(465062..466432) 1 NC_012440.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; nitrogen assimilation regulatory protein 466432 7674924 PERMA_0513 Persephonella marina EX-H1 nitrogen assimilation regulatory protein YP_002730302.1 465062 R 123214 CDS YP_002730303.1 225850069 7675192 complement(466500..466949) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 466949 7675192 PERMA_0514 Persephonella marina EX-H1 hypothetical protein YP_002730303.1 466500 R 123214 CDS YP_002730304.1 225850070 7676176 complement(467104..467541) 1 NC_012440.1 identified by match to protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer 467541 7676176 PERMA_0515 Persephonella marina EX-H1 methyl-accepting chemotaxis sensory transducer YP_002730304.1 467104 R 123214 CDS YP_002730305.1 225850071 7674201 complement(467559..467921) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 467921 7674201 PERMA_0516 Persephonella marina EX-H1 hypothetical protein YP_002730305.1 467559 R 123214 CDS YP_002730306.1 225850072 7676150 complement(467987..470275) 1 NC_012440.1 identified by match to protein family HMM PF01077; match to protein family HMM PF01206; match to protein family HMM PF03460; ferredoxin-sulfite reductase 470275 7676150 PERMA_0517 Persephonella marina EX-H1 ferredoxin-sulfite reductase YP_002730306.1 467987 R 123214 CDS YP_002730307.1 225850073 7674849 470515..471522 1 NC_012440.1 hypothetical protein 471522 7674849 PERMA_0518 Persephonella marina EX-H1 hypothetical protein YP_002730307.1 470515 D 123214 CDS YP_002730308.1 225850074 7674550 471535..472242 1 NC_012440.1 identified by match to protein family HMM PF01507; match to protein family HMM TIGR00434; phosphoadenosine phosphosulfate reductase 472242 7674550 PERMA_0519 Persephonella marina EX-H1 phosphoadenosine phosphosulfate reductase YP_002730308.1 471535 D 123214 CDS YP_002730309.1 225850075 7674763 472243..473007 1 NC_012440.1 identified by match to protein family HMM PF01925; hypothetical protein 473007 7674763 PERMA_0521 Persephonella marina EX-H1 hypothetical protein YP_002730309.1 472243 D 123214 CDS YP_002730310.1 225850076 7674960 complement(472960..473757) 1 NC_012440.1 identified by match to protein family HMM PF00398; match to protein family HMM TIGR00755; dimethyladenosine transferase 473757 ksgA 7674960 ksgA Persephonella marina EX-H1 dimethyladenosine transferase YP_002730310.1 472960 R 123214 CDS YP_002730311.1 225850077 7675286 complement(473757..474635) 1 NC_012440.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase 474635 galU 7675286 galU Persephonella marina EX-H1 UTP-glucose-1-phosphate uridylyltransferase YP_002730311.1 473757 R 123214 CDS YP_002730312.1 225850078 7674997 complement(474639..475355) 1 NC_012440.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 475355 purC 7674997 purC Persephonella marina EX-H1 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_002730312.1 474639 R 123214 CDS YP_002730313.1 225850079 7675309 complement(475368..476042) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 476042 7675309 PERMA_0524 Persephonella marina EX-H1 hypothetical protein YP_002730313.1 475368 R 123214 CDS YP_002730314.1 225850080 7674833 complement(476087..477049) 1 NC_012440.1 identified by match to protein family HMM PF01075; ADP-heptose:LPS heptosyltransferase 477049 7674833 PERMA_0525 Persephonella marina EX-H1 ADP-heptose:LPS heptosyltransferase YP_002730314.1 476087 R 123214 CDS YP_002730315.1 225850081 7675799 complement(477046..477375) 1 NC_012440.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 477375 7675799 PERMA_0526 Persephonella marina EX-H1 hypothetical protein YP_002730315.1 477046 R 123214 CDS YP_002730316.1 225850082 7675803 477505..477999 1 NC_012440.1 identified by Glimmer3; hypothetical protein 477999 7675803 PERMA_0527 Persephonella marina EX-H1 hypothetical protein YP_002730316.1 477505 D 123214 CDS YP_002730317.1 225850083 7674825 complement(478024..479046) 1 NC_012440.1 identified by match to protein family HMM PF02775; pyruvate synthase subunit PorB (Pyruvate oxidoreductasebeta chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit beta) 479046 7674825 PERMA_0528 Persephonella marina EX-H1 pyruvate synthase subunit PorB (Pyruvate oxidoreductasebeta chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit beta) YP_002730317.1 478024 R 123214 CDS YP_002730318.1 225850084 7675302 complement(479049..480242) 1 NC_012440.1 identified by match to protein family HMM PF01855; pyruvate synthase subunit PorA (Pyruvate oxidoreductasealpha chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit alpha) 480242 7675302 PERMA_0529 Persephonella marina EX-H1 pyruvate synthase subunit PorA (Pyruvate oxidoreductasealpha chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit alpha) YP_002730318.1 479049 R 123214 CDS YP_002730319.1 225850085 7675552 complement(480262..480579) 1 NC_012440.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR02179; pyruvate synthase subunit PorD (Pyruvate oxidoreductasedelta chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit delta) 480579 7675552 PERMA_0530 Persephonella marina EX-H1 pyruvate synthase subunit PorD (Pyruvate oxidoreductasedelta chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit delta) YP_002730319.1 480262 R 123214 CDS YP_002730320.1 225850086 7676168 complement(480658..481257) 1 NC_012440.1 identified by match to protein family HMM PF01558; match to protein family HMM TIGR02175; pyruvate/ketoisovalerate oxidoreductases common subunit gamma 481257 7676168 PERMA_0531 Persephonella marina EX-H1 pyruvate/ketoisovalerate oxidoreductases common subunit gamma YP_002730320.1 480658 R 123214 CDS YP_002730321.1 225850087 7674631 complement(481329..481937) 1 NC_012440.1 identified by match to protein family HMM PF01751; match to protein family HMM PF02132; match to protein family HMM TIGR00615; recombination protein RecR 481937 recR 7674631 recR Persephonella marina EX-H1 recombination protein RecR YP_002730321.1 481329 R 123214 CDS YP_002730322.1 225850088 7675146 complement(481934..482266) 1 NC_012440.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 482266 7675146 PERMA_0533 Persephonella marina EX-H1 hypothetical protein YP_002730322.1 481934 R 123214 CDS YP_002730323.1 225850089 7674349 complement(482267..483706) 1 NC_012440.1 identified by match to protein family HMM PF00004; match to protein family HMM TIGR02397; DNA polymerase III, subunits gamma and tau 483706 dnaX 7674349 dnaX Persephonella marina EX-H1 DNA polymerase III, subunits gamma and tau YP_002730323.1 482267 R 123214 CDS YP_002730324.1 225850090 7675658 complement(483762..484541) 1 NC_012440.1 identified by match to protein family HMM PF01926; GTPase, MMR1/HSR1 family 484541 7675658 PERMA_0535 Persephonella marina EX-H1 GTPase, MMR1/HSR1 family YP_002730324.1 483762 R 123214 CDS YP_002730325.1 225850091 7675739 484601..486649 1 NC_012440.1 identified by match to protein family HMM PF03968; match to protein family HMM PF04453; organic solvent tolerance protein 486649 7675739 PERMA_0537 Persephonella marina EX-H1 organic solvent tolerance protein YP_002730325.1 484601 D 123214 CDS YP_002730326.1 225850092 7675891 complement(486636..487304) 1 NC_012440.1 identified by match to protein family HMM PF01614; match to protein family HMM PF09339; transcriptional regulator, IclR family 487304 7675891 PERMA_0536 Persephonella marina EX-H1 transcriptional regulator, IclR family YP_002730326.1 486636 R 123214 CDS YP_002730327.1 225850093 7675769 487381..488301 1 NC_012440.1 identified by match to protein family HMM PF01715; match to protein family HMM TIGR00174; tRNA delta(2)-isopentenylpyrophosphate transferase 488301 miaA 7675769 miaA Persephonella marina EX-H1 tRNA delta(2)-isopentenylpyrophosphate transferase YP_002730327.1 487381 D 123214 CDS YP_002730328.1 225850094 7674432 488319..488510 1 NC_012440.1 identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383; RNA chaperone Hfq 488510 hfq_1 7674432 hfq_1 Persephonella marina EX-H1 RNA chaperone Hfq YP_002730328.1 488319 D 123214 CDS YP_002730329.1 225850095 7675946 488532..489653 1 NC_012440.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR03156; GTP-binding protein HflX 489653 hflX 7675946 hflX Persephonella marina EX-H1 GTP-binding protein HflX YP_002730329.1 488532 D 123214 CDS YP_002730330.1 225850096 7675364 489655..490002 1 NC_012440.1 identified by match to protein family HMM PF01230; histidine triad nucleotide-binding protein 2 490002 7675364 PERMA_0541 Persephonella marina EX-H1 histidine triad nucleotide-binding protein 2 YP_002730330.1 489655 D 123214 CDS YP_002730331.1 225850097 7674279 489993..490595 1 NC_012440.1 identified by match to protein family HMM PF01206; hypothetical protein 490595 7674279 PERMA_0542 Persephonella marina EX-H1 hypothetical protein YP_002730331.1 489993 D 123214 CDS YP_002730332.1 225850098 7675202 complement(490597..491205) 1 NC_012440.1 identified by match to protein family HMM PF08220; match to protein family HMM PF08279; YcnK 491205 7675202 PERMA_0543 Persephonella marina EX-H1 YcnK YP_002730332.1 490597 R 123214 CDS YP_002730333.1 225850099 7675019 complement(491218..491802) 1 NC_012440.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 491802 hisB 7675019 hisB Persephonella marina EX-H1 imidazoleglycerol-phosphate dehydratase YP_002730333.1 491218 R 123214 CDS YP_002730334.1 225850100 7676173 complement(491814..492539) 1 NC_012440.1 identified by match to protein family HMM PF01695; DNA replication protein DnaC 492539 7676173 PERMA_0545 Persephonella marina EX-H1 DNA replication protein DnaC YP_002730334.1 491814 R 123214 CDS YP_002730335.1 225850101 7676160 complement(492603..492923) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 492923 7676160 PERMA_0546 Persephonella marina EX-H1 hypothetical protein YP_002730335.1 492603 R 123214 CDS YP_002730336.1 225850102 7675610 complement(492920..493522) 1 NC_012440.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 493522 7675610 PERMA_0547 Persephonella marina EX-H1 TetR family transcriptional regulator YP_002730336.1 492920 R 123214 CDS YP_002730337.1 225850103 7674609 complement(493519..494400) 1 NC_012440.1 identified by match to protein family HMM PF02272; phosphoesterase, dhha1 494400 7674609 PERMA_0548 Persephonella marina EX-H1 phosphoesterase, dhha1 YP_002730337.1 493519 R 123214 CDS YP_002730338.1 225850104 7675099 494600..495589 1 NC_012440.1 identified by match to protein family HMM PF00268; ribonucleoside-diphosphate reductase, betsubunit A 495589 7675099 PERMA_0549 Persephonella marina EX-H1 ribonucleoside-diphosphate reductase, betsubunit A YP_002730338.1 494600 D 123214 CDS YP_002730339.1 225850105 7675944 495616..495765 1 NC_012440.1 identified by Glimmer3; hypothetical protein 495765 7675944 PERMA_0550 Persephonella marina EX-H1 hypothetical protein YP_002730339.1 495616 D 123214 CDS YP_002730340.1 225850106 7676007 495815..498229 1 NC_012440.1 identified by match to protein family HMM PF00317; match to protein family HMM PF02867; match to protein family HMM TIGR02506; ribonucleoside-diphosphate reductase, alphsubunit A 498229 7676007 PERMA_0551 Persephonella marina EX-H1 ribonucleoside-diphosphate reductase, alphsubunit A YP_002730340.1 495815 D 123214 CDS YP_002730341.1 225850107 7675109 498275..498439 1 NC_012440.1 identified by Glimmer3; hypothetical protein 498439 7675109 PERMA_0552 Persephonella marina EX-H1 hypothetical protein YP_002730341.1 498275 D 123214 CDS YP_002730342.1 225850108 7674677 498699..499745 1 NC_012440.1 hypothetical protein 499745 7674677 PERMA_0553 Persephonella marina EX-H1 hypothetical protein YP_002730342.1 498699 D 123214 CDS YP_002730343.1 225850109 7674401 499862..500212 1 NC_012440.1 MlpB 500212 7674401 PERMA_0554 Persephonella marina EX-H1 MlpB YP_002730343.1 499862 D 123214 CDS YP_002730344.1 225850110 7674780 complement(500255..501679) 1 NC_012440.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 501679 gatB 7674780 gatB Persephonella marina EX-H1 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_002730344.1 500255 R 123214 CDS YP_002730345.1 225850111 7676025 502038..503294 1 NC_012440.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 503294 ahcY 7676025 ahcY Persephonella marina EX-H1 S-adenosyl-L-homocysteine hydrolase YP_002730345.1 502038 D 123214 CDS YP_002730346.1 225850112 7675001 503322..503546 1 NC_012440.1 identified by Glimmer3; hypothetical protein 503546 7675001 PERMA_0557 Persephonella marina EX-H1 hypothetical protein YP_002730346.1 503322 D 123214 CDS YP_002730347.1 225850113 7674608 503561..505234 1 NC_012440.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 505234 ilvD 7674608 ilvD Persephonella marina EX-H1 dihydroxy-acid dehydratase YP_002730347.1 503561 D 123214 CDS YP_002730348.1 225850114 7675446 505255..506385 1 NC_012440.1 identified by match to protein family HMM PF00438; match to protein family HMM PF02772; match to protein family HMM PF02773; match to protein family HMM TIGR01034; methionine adenosyltransferase 506385 metK 7675446 metK Persephonella marina EX-H1 methionine adenosyltransferase YP_002730348.1 505255 D 123214 CDS YP_002730349.1 225850115 7674987 506378..506818 1 NC_012440.1 hypothetical protein 506818 7674987 PERMA_0561 Persephonella marina EX-H1 hypothetical protein YP_002730349.1 506378 D 123214 CDS YP_002730350.1 225850116 7675311 complement(506815..508188) 1 NC_012440.1 identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350; dihydrolipoyl dehydrogenase 508188 lpdA 7675311 lpdA Persephonella marina EX-H1 dihydrolipoyl dehydrogenase YP_002730350.1 506815 R 123214 CDS YP_002730351.1 225850117 7676175 complement(508200..511598) 1 NC_012440.1 Ig family protein 511598 7676175 PERMA_0562 Persephonella marina EX-H1 Ig family protein YP_002730351.1 508200 R 123214 CDS YP_002730352.1 225850118 7674998 complement(511615..513441) 1 NC_012440.1 identified by match to protein family HMM PF00263; fimbrial assembly protein PilQ 513441 7674998 PERMA_0563 Persephonella marina EX-H1 fimbrial assembly protein PilQ YP_002730352.1 511615 R 123214 CDS YP_002730353.1 225850119 7674971 complement(513445..513690) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 513690 7674971 PERMA_0564 Persephonella marina EX-H1 hypothetical protein YP_002730353.1 513445 R 123214 CDS YP_002730354.1 225850120 7675301 complement(513692..514384) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 514384 7675301 PERMA_0565 Persephonella marina EX-H1 hypothetical protein YP_002730354.1 513692 R 123214 CDS YP_002730355.1 225850121 7675064 complement(514404..515003) 1 NC_012440.1 identified by match to protein family HMM PF05137; Fimbrial assembly protein 515003 7675064 PERMA_0566 Persephonella marina EX-H1 Fimbrial assembly protein YP_002730355.1 514404 R 123214 CDS YP_002730356.1 225850122 7675546 complement(514996..515949) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 515949 7675546 PERMA_0567 Persephonella marina EX-H1 hypothetical protein YP_002730356.1 514996 R 123214 CDS YP_002730357.1 225850123 7676125 complement(516047..518485) 1 NC_012440.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 518485 ppsA 7676125 ppsA Persephonella marina EX-H1 phosphoenolpyruvate synthase YP_002730357.1 516047 R 123214 CDS YP_002730358.1 225850124 7674472 complement(518509..520626) 1 NC_012440.1 identified by match to protein family HMM PF02092; match to protein family HMM PF05746; match to protein family HMM TIGR00211; glycyl-tRNA synthetase, betsubunit A 520626 glyS 7674472 glyS Persephonella marina EX-H1 glycyl-tRNA synthetase, betsubunit A YP_002730358.1 518509 R 123214 CDS YP_002730359.1 225850125 7674624 complement(520627..521532) 1 NC_012440.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 521532 glyQ 7674624 glyQ Persephonella marina EX-H1 glycyl-tRNA synthetase subunit alpha YP_002730359.1 520627 R 123214 CDS YP_002730360.1 225850126 7675107 complement(521597..522769) 1 NC_012440.1 catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 522769 truD 7675107 truD Persephonella marina EX-H1 tRNA pseudouridine synthase D YP_002730360.1 521597 R 123214 CDS YP_002730361.1 225850127 7675348 522860..525169 1 NC_012440.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; penicillin-binding protein 1A 525169 7675348 PERMA_0572 Persephonella marina EX-H1 penicillin-binding protein 1A YP_002730361.1 522860 D 123214 CDS YP_002730362.1 225850128 7675014 525181..526425 1 NC_012440.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 526425 trpB 7675014 trpB Persephonella marina EX-H1 tryptophan synthase subunit beta YP_002730362.1 525181 D 123214 CDS YP_002730363.1 225850129 7676054 526435..527496 1 NC_012440.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 527496 7676054 PERMA_0574 Persephonella marina EX-H1 ribosomal RNA large subunit methyltransferase N YP_002730363.1 526435 D 123214 CDS YP_002730364.1 225850130 7675768 527574..529667 1 NC_012440.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; formate dehydrogenase alpha chain 529667 7675768 PERMA_0576 Persephonella marina EX-H1 formate dehydrogenase alpha chain YP_002730364.1 527574 D 123214 CDS YP_002730365.1 225850131 7675535 complement(529624..531534) 1 NC_012440.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; signal transduction response regulator 531534 7675535 PERMA_0575 Persephonella marina EX-H1 signal transduction response regulator YP_002730365.1 529624 R 123214 CDS YP_002730366.1 225850132 7675464 complement(531527..531985) 1 NC_012440.1 hypothetical protein 531985 7675464 PERMA_0577 Persephonella marina EX-H1 hypothetical protein YP_002730366.1 531527 R 123214 CDS YP_002730367.1 225850133 7675674 complement(531988..533859) 1 NC_012440.1 identified by match to protein family HMM PF07715; TonB-dependent receptor plug domain protein 533859 7675674 PERMA_0578 Persephonella marina EX-H1 TonB-dependent receptor plug domain protein YP_002730367.1 531988 R 123214 CDS YP_002730368.1 225850134 7675280 complement(533898..534653) 1 NC_012440.1 identified by match to protein family HMM PF02348; match to protein family HMM TIGR00466; 3-deoxy-D-manno-octulosonate cytidylyltransferase 534653 kdsB 7675280 kdsB Persephonella marina EX-H1 3-deoxy-D-manno-octulosonate cytidylyltransferase YP_002730368.1 533898 R 123214 CDS YP_002730369.1 225850135 7676080 complement(534697..535695) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 535695 7676080 PERMA_0580 Persephonella marina EX-H1 hypothetical protein YP_002730369.1 534697 R 123214 CDS YP_002730370.1 225850136 7674203 complement(535737..536537) 1 NC_012440.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 536537 thiG 7674203 thiG Persephonella marina EX-H1 thiazole synthase YP_002730370.1 535737 R 123214 CDS YP_002730371.1 225850137 7675840 complement(536565..537971) 1 NC_012440.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; metallo-beta-lactamase family protein 537971 7675840 PERMA_0582 Persephonella marina EX-H1 metallo-beta-lactamase family protein YP_002730371.1 536565 R 123214 CDS YP_002730372.1 225850138 7675300 complement(537982..538602) 1 NC_012440.1 heavy-metal-associated domain protein 538602 7675300 PERMA_0583 Persephonella marina EX-H1 heavy-metal-associated domain protein YP_002730372.1 537982 R 123214 CDS YP_002730373.1 225850139 7675162 538712..539647 1 NC_012440.1 identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460; methionyl-tRNA formyltransferase 539647 fmt 7675162 fmt Persephonella marina EX-H1 methionyl-tRNA formyltransferase YP_002730373.1 538712 D 123214 CDS YP_002730374.1 225850140 7676021 539690..540418 1 NC_012440.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; RNA methyltransferase, TrmH family, group 3 540418 7676021 PERMA_0585 Persephonella marina EX-H1 RNA methyltransferase, TrmH family, group 3 YP_002730374.1 539690 D 123214 CDS YP_002730375.1 225850141 7674437 540559..541053 1 NC_012440.1 identified by match to protein family HMM PF00355; match to protein family HMM TIGR01409; match to protein family HMM TIGR01416; ubiquinol-cytochrome c reductase, iron-sulfur subunit 541053 petA 7674437 petA Persephonella marina EX-H1 ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_002730375.1 540559 D 123214 CDS YP_002730376.1 225850142 7676096 541066..542268 1 NC_012440.1 identified by match to protein family HMM PF00032; match to protein family HMM PF00033; cytochrome B 542268 7676096 PERMA_0587 Persephonella marina EX-H1 cytochrome B YP_002730376.1 541066 D 123214 CDS YP_002730377.1 225850143 7674650 542268..543125 1 NC_012440.1 ubiquinol cytochrome c oxidoreductase, cytochrome c1 subunit 543125 7674650 PERMA_0588 Persephonella marina EX-H1 ubiquinol cytochrome c oxidoreductase, cytochrome c1 subunit YP_002730377.1 542268 D 123214 CDS YP_002730378.1 225850144 7675503 complement(543152..543955) 1 NC_012440.1 identified by match to protein family HMM PF01210; match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR00112; pyrroline-5-carboxylate reductase 543955 proC 7675503 proC Persephonella marina EX-H1 pyrroline-5-carboxylate reductase YP_002730378.1 543152 R 123214 CDS YP_002730379.1 225850145 7674574 complement(543948..544565) 1 NC_012440.1 identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; DNA polymerase III subunit epsilon 544565 7674574 PERMA_0590 Persephonella marina EX-H1 DNA polymerase III subunit epsilon YP_002730379.1 543948 R 123214 CDS YP_002730380.1 225850146 7675532 complement(544586..545785) 1 NC_012440.1 identified by match to protein family HMM PF00999; hypothetical protein 545785 7675532 PERMA_0591 Persephonella marina EX-H1 hypothetical protein YP_002730380.1 544586 R 123214 CDS YP_002730381.1 225850147 7675597 complement(545778..547220) 1 NC_012440.1 identified by match to protein family HMM PF02080; match to protein family HMM PF02254; TrkA-N domain family protein 547220 7675597 PERMA_0592 Persephonella marina EX-H1 TrkA-N domain family protein YP_002730381.1 545778 R 123214 CDS YP_002730382.1 225850148 7674551 547285..548529 1 NC_012440.1 hypothetical protein 548529 7674551 PERMA_0593 Persephonella marina EX-H1 hypothetical protein YP_002730382.1 547285 D 123214 CDS YP_002730383.1 225850149 7674985 complement(548543..549205) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 549205 7674985 PERMA_0594 Persephonella marina EX-H1 hypothetical protein YP_002730383.1 548543 R 123214 CDS YP_002730384.1 225850150 7674752 complement(549207..550865) 1 NC_012440.1 identified by match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456; arginyl-tRNA synthetase 550865 argS 7674752 argS Persephonella marina EX-H1 arginyl-tRNA synthetase YP_002730384.1 549207 R 123214 CDS YP_002730385.1 225850151 7674897 550988..552592 1 NC_012440.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 552592 pyrG 7674897 pyrG Persephonella marina EX-H1 CTP synthetase YP_002730385.1 550988 D 123214 CDS YP_002730386.1 225850152 7674818 552648..554543 1 NC_012440.1 identified by match to protein family HMM PF00501; match to protein family HMM TIGR02188; acetate--CoA ligase 554543 acsA_1 7674818 acsA_1 Persephonella marina EX-H1 acetate--CoA ligase YP_002730386.1 552648 D 123214 CDS YP_002730387.1 225850153 7674455 554606..555952 1 NC_012440.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 555952 hslU 7674455 hslU Persephonella marina EX-H1 ATP-dependent protease ATP-binding subunit HslU YP_002730387.1 554606 D 123214 CDS YP_002730388.1 225850154 7675951 555966..556196 1 NC_012440.1 chaperone protein DnaK (Heat shock protein 70) (Heat shock 70 kDaprotein) (HSP70) 556196 7675951 PERMA_0599 Persephonella marina EX-H1 chaperone protein DnaK (Heat shock protein 70) (Heat shock 70 kDaprotein) (HSP70) YP_002730388.1 555966 D 123214 CDS YP_002730389.1 225850155 7675257 556207..556509 1 NC_012440.1 identified by match to protein family HMM PF01037; hypothetical protein 556509 7675257 PERMA_0600 Persephonella marina EX-H1 hypothetical protein YP_002730389.1 556207 D 123214 CDS YP_002730390.1 225850156 7675144 complement(556512..556928) 1 NC_012440.1 lipoprotein 556928 7675144 PERMA_0601 Persephonella marina EX-H1 lipoprotein YP_002730390.1 556512 R 123214 CDS YP_002730391.1 225850157 7674731 complement(556964..557206) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 557206 7674731 PERMA_0602 Persephonella marina EX-H1 hypothetical protein YP_002730391.1 556964 R 123214 CDS YP_002730392.1 225850158 7675588 complement(557359..557610) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 557610 7675588 PERMA_0603 Persephonella marina EX-H1 hypothetical protein YP_002730392.1 557359 R 123214 CDS YP_002730393.1 225850159 7675368 complement(557635..558093) 1 NC_012440.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 558093 smpB 7675368 smpB Persephonella marina EX-H1 SsrA-binding protein YP_002730393.1 557635 R 123214 CDS YP_002730394.1 225850160 7674583 558173..561085 1 NC_012440.1 identified by match to protein family HMM PF00595; match to protein family HMM PF01433; match to protein family HMM PF04187; peptidase M1, membrane alanine aminopeptidase 561085 7674583 PERMA_0605 Persephonella marina EX-H1 peptidase M1, membrane alanine aminopeptidase YP_002730394.1 558173 D 123214 CDS YP_002730395.1 225850161 7674389 561130..562440 1 NC_012440.1 identified by match to protein family HMM PF00206; match to protein family HMM TIGR00928; adenylosuccinate lyase 562440 purB 7674389 purB Persephonella marina EX-H1 adenylosuccinate lyase YP_002730395.1 561130 D 123214 CDS YP_002730396.1 225850162 7675680 562437..563096 1 NC_012440.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; endonuclease III (DNA-(apurinic orapyrimidinic site) lyase) 563096 7675680 PERMA_0607 Persephonella marina EX-H1 endonuclease III (DNA-(apurinic orapyrimidinic site) lyase) YP_002730396.1 562437 D 123214 CDS YP_002730397.1 225850163 7674199 complement(563097..563273) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 563273 7674199 PERMA_0608 Persephonella marina EX-H1 hypothetical protein YP_002730397.1 563097 R 123214 CDS YP_002730398.1 225850164 7674708 complement(563284..565008) 1 NC_012440.1 identified by match to protein family HMM PF00795; match to protein family HMM PF02540; match to protein family HMM TIGR00552; glutamine-dependent NAD+ synthetase 565008 nadE 7674708 nadE Persephonella marina EX-H1 glutamine-dependent NAD+ synthetase YP_002730398.1 563284 R 123214 CDS YP_002730399.1 225850165 7675935 565096..566319 1 NC_012440.1 identified by match to protein family HMM PF00563; match to protein family HMM PF08668; EAL domain protein 566319 7675935 PERMA_0610 Persephonella marina EX-H1 EAL domain protein YP_002730399.1 565096 D 123214 CDS YP_002730400.1 225850166 7675402 566365..567261 1 NC_012440.1 identified by Glimmer3; hypothetical protein 567261 7675402 PERMA_0611 Persephonella marina EX-H1 hypothetical protein YP_002730400.1 566365 D 123214 CDS YP_002730401.1 225850167 7675966 567274..567630 1 NC_012440.1 identified by Glimmer3; hypothetical protein 567630 7675966 PERMA_0612 Persephonella marina EX-H1 hypothetical protein YP_002730401.1 567274 D 123214 CDS YP_002730402.1 225850168 7675864 567631..567924 1 NC_012440.1 identified by Glimmer3; hypothetical protein 567924 7675864 PERMA_0613 Persephonella marina EX-H1 hypothetical protein YP_002730402.1 567631 D 123214 CDS YP_002730403.1 225850169 7675889 567990..570140 1 NC_012440.1 identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; GTP pyrophosphokinase 570140 7675889 PERMA_0614 Persephonella marina EX-H1 GTP pyrophosphokinase YP_002730403.1 567990 D 123214 CDS YP_002730404.1 225850170 7674244 complement(570141..570734) 1 NC_012440.1 identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023; acyl-phosphate glycerol 3-phosphate acyltransferase 570734 plsY 7674244 plsY Persephonella marina EX-H1 acyl-phosphate glycerol 3-phosphate acyltransferase YP_002730404.1 570141 R 123214 CDS YP_002730405.1 225850171 7675376 complement(570725..571243) 1 NC_012440.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 571243 pgsA_1 7675376 pgsA_1 Persephonella marina EX-H1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_002730405.1 570725 R 123214 CDS YP_002730406.1 225850172 7674572 complement(571240..572379) 1 NC_012440.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 572379 ftsZ 7674572 ftsZ Persephonella marina EX-H1 cell division protein FtsZ YP_002730406.1 571240 R 123214 CDS YP_002730407.1 225850173 7674787 complement(572399..573637) 1 NC_012440.1 identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA 573637 ftsA 7674787 ftsA Persephonella marina EX-H1 cell division protein FtsA YP_002730407.1 572399 R 123214 CDS YP_002730408.1 225850174 7675689 complement(573641..574324) 1 NC_012440.1 identified by match to protein family HMM PF08478; polypeptide-transport-associated domain protein FtsQ-type 574324 7675689 PERMA_0619 Persephonella marina EX-H1 polypeptide-transport-associated domain protein FtsQ-type YP_002730408.1 573641 R 123214 CDS YP_002730409.1 225850175 7675447 complement(574311..575222) 1 NC_012440.1 identified by match to protein family HMM PF01071; match to protein family HMM PF01820; match to protein family HMM PF02222; match to protein family HMM PF02655; match to protein family HMM PF07478; match to protein family HMM PF08443; match to protein family HMM TIGR01205; D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) 575222 7675447 PERMA_0620 Persephonella marina EX-H1 D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) YP_002730409.1 574311 R 123214 CDS YP_002730410.1 225850176 7674615 complement(575215..576081) 1 NC_012440.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02873; match to protein family HMM TIGR00179; UDP-N-acetylenolpyruvoylglucosamine reductase 576081 murB 7674615 murB Persephonella marina EX-H1 UDP-N-acetylenolpyruvoylglucosamine reductase YP_002730410.1 575215 R 123214 CDS YP_002730411.1 225850177 7675198 complement(576068..577120) 1 NC_012440.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDP diphospho-muramoyl pentapeptide beta-N acetylglucosaminyl transferase 577120 murG 7675198 murG Persephonella marina EX-H1 UDP diphospho-muramoyl pentapeptide beta-N acetylglucosaminyl transferase YP_002730411.1 576068 R 123214 CDS YP_002730412.1 225850178 7674294 complement(577117..578235) 1 NC_012440.1 identified by match to protein family HMM PF01098; cell cycle protein 578235 7674294 PERMA_0623 Persephonella marina EX-H1 cell cycle protein YP_002730412.1 577117 R 123214 CDS YP_002730413.1 225850179 7674739 complement(578228..579487) 1 NC_012440.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01087; UDP-N-acetylmuramoylalanine--D-glutamate ligase 579487 murD 7674739 murD Persephonella marina EX-H1 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_002730413.1 578228 R 123214 CDS YP_002730414.1 225850180 7674841 579574..581415 1 NC_012440.1 catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit B 581415 oadA 7674841 oadA Persephonella marina EX-H1 pyruvate carboxylase subunit B YP_002730414.1 579574 D 123214 CDS YP_002730415.1 225850181 7676074 complement(581432..582049) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 582049 7676074 PERMA_0626 Persephonella marina EX-H1 hypothetical protein YP_002730415.1 581432 R 123214 CDS YP_002730416.1 225850182 7674210 complement(582144..583598) 1 NC_012440.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01316; glutamate synthase (NADPH), homotetrameric 583598 gltA 7674210 gltA Persephonella marina EX-H1 glutamate synthase (NADPH), homotetrameric YP_002730416.1 582144 R 123214 CDS YP_002730417.1 225850183 7675396 complement(583612..584520) 1 NC_012440.1 identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00658; ornithine carbamoyltransferase 584520 argF 7675396 argF Persephonella marina EX-H1 ornithine carbamoyltransferase YP_002730417.1 583612 R 123214 CDS YP_002730418.1 225850184 7674558 complement(584611..585519) 1 NC_012440.1 identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00670; aspartate carbamoyltransferase 585519 pyrB 7674558 pyrB Persephonella marina EX-H1 aspartate carbamoyltransferase YP_002730418.1 584611 R 123214 CDS YP_002730419.1 225850185 7676055 complement(585568..587532) 1 NC_012440.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor 587532 7676055 PERMA_0630 Persephonella marina EX-H1 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor YP_002730419.1 585568 R 123214 CDS YP_002730420.1 225850186 7674772 complement(587544..588425) 1 NC_012440.1 identified by match to protein family HMM PF01509; match to protein family HMM PF09157; match to protein family HMM TIGR00431; tRNA pseudouridine synthase B 588425 truB 7674772 truB Persephonella marina EX-H1 tRNA pseudouridine synthase B YP_002730420.1 587544 R 123214 CDS YP_002730421.1 225850187 7674711 complement(588438..589658) 1 NC_012440.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499; folylpolyglutamate synthetase 589658 7674711 PERMA_0632 Persephonella marina EX-H1 folylpolyglutamate synthetase YP_002730421.1 588438 R 123214 CDS YP_002730422.1 225850188 7674856 complement(589655..590431) 1 NC_012440.1 identified by match to protein family HMM PF01790; match to protein family HMM TIGR00544; prolipoprotein diacylglyceryl transferase 590431 lgt 7674856 lgt Persephonella marina EX-H1 prolipoprotein diacylglyceryl transferase YP_002730422.1 589655 R 123214 CDS YP_002730423.1 225850189 7676067 complement(590444..590974) 1 NC_012440.1 identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079; peptide deformylase 590974 def_2 7676067 def_2 Persephonella marina EX-H1 peptide deformylase YP_002730423.1 590444 R 123214 CDS YP_002730424.1 225850190 7674237 complement(590977..591654) 1 NC_012440.1 identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; ribulose-phosphate 3-epimerase 591654 rpe 7674237 rpe Persephonella marina EX-H1 ribulose-phosphate 3-epimerase YP_002730424.1 590977 R 123214 CDS YP_002730425.1 225850191 7674636 591740..592366 1 NC_012440.1 identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase 592366 cdsA_2 7674636 cdsA_2 Persephonella marina EX-H1 phosphatidate cytidylyltransferase YP_002730425.1 591740 D 123214 CDS YP_002730426.1 225850192 7674732 complement(592319..592642) 1 NC_012440.1 identified by match to protein family HMM PF01883; protein containing DUF59 592642 7674732 PERMA_0636 Persephonella marina EX-H1 protein containing DUF59 YP_002730426.1 592319 R 123214 CDS YP_002730427.1 225850193 7675835 complement(592646..593923) 1 NC_012440.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 593923 pyrC 7675835 pyrC Persephonella marina EX-H1 dihydroorotase YP_002730427.1 592646 R 123214 CDS YP_002730428.1 225850194 7675138 complement(593978..594679) 1 NC_012440.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 594679 lepB 7675138 lepB Persephonella marina EX-H1 signal peptidase I YP_002730428.1 593978 R 123214 CDS YP_002730429.1 225850195 7675676 complement(594696..595274) 1 NC_012440.1 identified by match to protein family HMM PF00565; thermonuclease 595274 7675676 PERMA_0640 Persephonella marina EX-H1 thermonuclease YP_002730429.1 594696 R 123214 CDS YP_002730430.1 225850196 7675716 complement(595264..595764) 1 NC_012440.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase, catalytic subunit 595764 purE 7675716 purE Persephonella marina EX-H1 phosphoribosylaminoimidazole carboxylase, catalytic subunit YP_002730430.1 595264 R 123214 CDS YP_002730431.1 225850197 7674270 complement(595776..600179) 1 NC_012440.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898; glutamate synthase [NADPH] large chain (nadph-gogat) 600179 7674270 PERMA_0642 Persephonella marina EX-H1 glutamate synthase [NADPH] large chain (nadph-gogat) YP_002730431.1 595776 R 123214 CDS YP_002730432.1 225850198 7675020 600337..601071 1 NC_012440.1 identified by match to protein family HMM PF01416; match to protein family HMM TIGR00071; tRNA pseudouridine synthase A 601071 truA 7675020 truA Persephonella marina EX-H1 tRNA pseudouridine synthase A YP_002730432.1 600337 D 123214 CDS YP_002730433.1 225850199 7675318 601083..602000 1 NC_012440.1 identified by match to protein family HMM PF01926; match to protein family HMM PF07650; match to protein family HMM TIGR00231; match to protein family HMM TIGR00436; GTP-binding protein Era 602000 era 7675318 era Persephonella marina EX-H1 GTP-binding protein Era YP_002730433.1 601083 D 123214 CDS YP_002730434.1 225850200 7675611 602009..603379 1 NC_012440.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter 603379 mgtE 7675611 mgtE Persephonella marina EX-H1 magnesium transporter YP_002730434.1 602009 D 123214 CDS YP_002730435.1 225850201 7676182 complement(603380..604651) 1 NC_012440.1 identified by match to protein family HMM PF00015; Methyl-accepting chemotaxis protein signaling domain protein 604651 7676182 PERMA_0646 Persephonella marina EX-H1 Methyl-accepting chemotaxis protein signaling domain protein YP_002730435.1 603380 R 123214 CDS YP_002730436.1 225850202 7674276 complement(604710..606005) 1 NC_012440.1 catalyzes the formation of L-tryptophan from indole and L-serine; tryptophan synthase subunit beta 606005 7674276 PERMA_0647 Persephonella marina EX-H1 tryptophan synthase subunit beta YP_002730436.1 604710 R 123214 CDS YP_002730437.1 225850203 7675100 606060..607040 1 NC_012440.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase 607040 fabD 7675100 fabD Persephonella marina EX-H1 malonyl CoA-acyl carrier protein transacylase YP_002730437.1 606060 D 123214 CDS YP_002730438.1 225850204 7674384 607037..607714 1 NC_012440.1 identified by match to protein family HMM TIGR00347; dethiobiotin synthase 607714 bioD 7674384 bioD Persephonella marina EX-H1 dethiobiotin synthase YP_002730438.1 607037 D 123214 CDS YP_002730439.1 225850205 7674407 607714..608436 1 NC_012440.1 identified by match to protein family HMM PF01904; hypothetical protein 608436 7674407 PERMA_0651 Persephonella marina EX-H1 hypothetical protein YP_002730439.1 607714 D 123214 CDS YP_002730440.1 225850206 7675664 complement(608416..609675) 1 NC_012440.1 hypothetical protein 609675 7675664 PERMA_0650 Persephonella marina EX-H1 hypothetical protein YP_002730440.1 608416 R 123214 CDS YP_002730441.1 225850207 7675265 complement(609659..610105) 1 NC_012440.1 identified by match to protein family HMM PF05866; crossover junction endodeoxyribonuclease RusA (Hollidayjunction nuclease rusA) (Holliday junction resolvase) 610105 7675265 PERMA_0652 Persephonella marina EX-H1 crossover junction endodeoxyribonuclease RusA (Hollidayjunction nuclease rusA) (Holliday junction resolvase) YP_002730441.1 609659 R 123214 CDS YP_002730442.1 225850208 7675512 610422..611387 1 NC_012440.1 identified by match to protein family HMM PF00581; rhodanese domain protein 611387 7675512 PERMA_0653 Persephonella marina EX-H1 rhodanese domain protein YP_002730442.1 610422 D 123214 CDS YP_002730443.1 225850209 7675044 611434..612573 1 NC_012440.1 hypothetical protein 612573 7675044 PERMA_0654 Persephonella marina EX-H1 hypothetical protein YP_002730443.1 611434 D 123214 CDS YP_002730444.1 225850210 7674751 612598..612750 1 NC_012440.1 identified by Glimmer3; hypothetical protein 612750 7674751 PERMA_0655 Persephonella marina EX-H1 hypothetical protein YP_002730444.1 612598 D 123214 CDS YP_002730445.1 225850211 7674440 612747..613247 1 NC_012440.1 identified by Glimmer3; hypothetical protein 613247 7674440 PERMA_0656 Persephonella marina EX-H1 hypothetical protein YP_002730445.1 612747 D 123214 CDS YP_002730446.1 225850212 7676052 613234..616185 1 NC_012440.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01409; dimethylsulfide dehydrogenase subunit alpha (Dimethylsulfide dehydrogenase molybdenum subunit) (DMS DH alphasubunit) (DMS DH molybdenum subunit) 616185 7676052 PERMA_0657 Persephonella marina EX-H1 dimethylsulfide dehydrogenase subunit alpha (Dimethylsulfide dehydrogenase molybdenum subunit) (DMS DH alphasubunit) (DMS DH molybdenum subunit) YP_002730446.1 613234 D 123214 CDS YP_002730447.1 225850213 7674653 616203..617345 1 NC_012440.1 identified by match to protein family HMM TIGR03478; respiratory nitrate reductase 1 beta chain (Nitratereductase subunit A beta) (Quinol-nitrate oxidoreductase subunitbeta) 617345 7674653 PERMA_0658 Persephonella marina EX-H1 respiratory nitrate reductase 1 beta chain (Nitratereductase subunit A beta) (Quinol-nitrate oxidoreductase subunitbeta) YP_002730447.1 616203 D 123214 CDS YP_002730448.1 225850214 7674623 617372..618577 1 NC_012440.1 identified by match to protein family HMM PF09459; ethylbenzene dehydrogenase family 618577 7674623 PERMA_0659 Persephonella marina EX-H1 ethylbenzene dehydrogenase family YP_002730448.1 617372 D 123214 CDS YP_002730449.1 225850215 7674269 618592..619065 1 NC_012440.1 identified by Glimmer3; hypothetical protein 619065 7674269 PERMA_0660 Persephonella marina EX-H1 hypothetical protein YP_002730449.1 618592 D 123214 CDS YP_002730450.1 225850216 7675986 619089..619724 1 NC_012440.1 identified by match to protein family HMM PF00037; sulfur reductase FeS subunit 619724 7675986 PERMA_0661 Persephonella marina EX-H1 sulfur reductase FeS subunit YP_002730450.1 619089 D 123214 CDS YP_002730451.1 225850217 7675707 619727..620611 1 NC_012440.1 identified by match to protein family HMM PF03916; polysulfide reductase NrfD 620611 7675707 PERMA_0662 Persephonella marina EX-H1 polysulfide reductase NrfD YP_002730451.1 619727 D 123214 CDS YP_002730452.1 225850218 7675869 620630..623905 1 NC_012440.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; molybdopterin oxidoreductase 623905 7675869 PERMA_0663 Persephonella marina EX-H1 molybdopterin oxidoreductase YP_002730452.1 620630 D 123214 CDS YP_002730453.1 225850219 7675976 623942..624571 1 NC_012440.1 hypothetical protein 624571 7675976 PERMA_0664 Persephonella marina EX-H1 hypothetical protein YP_002730453.1 623942 D 123214 CDS YP_002730454.1 225850220 7675507 624607..625689 1 NC_012440.1 identified by match to protein family HMM PF00037; 4Fe-4S binding domain protein 625689 7675507 PERMA_0665 Persephonella marina EX-H1 4Fe-4S binding domain protein YP_002730454.1 624607 D 123214 CDS YP_002730455.1 225850221 7675851 625826..627160 1 NC_012440.1 identified by match to protein family HMM PF03349; aromatic hydrocarbon degradation membrane protein 627160 7675851 PERMA_0666 Persephonella marina EX-H1 aromatic hydrocarbon degradation membrane protein YP_002730455.1 625826 D 123214 CDS YP_002730456.1 225850222 7674842 627190..627681 1 NC_012440.1 identified by match to protein family HMM PF02036; SCP-2 sterol transfer family protein 627681 7674842 PERMA_0667 Persephonella marina EX-H1 SCP-2 sterol transfer family protein YP_002730456.1 627190 D 123214 CDS YP_002730457.1 225850223 7675985 627829..628848 1 NC_012440.1 identified by match to protein family HMM PF03601; match to protein family HMM TIGR00698; membrane protein 628848 7675985 PERMA_0668 Persephonella marina EX-H1 membrane protein YP_002730457.1 627829 D 123214 CDS YP_002730458.1 225850224 7675983 629460..630563 1 NC_012440.1 methyltransferase type 11 630563 7675983 PERMA_0669 Persephonella marina EX-H1 methyltransferase type 11 YP_002730458.1 629460 D 123214 CDS YP_002730459.1 225850225 7674250 630551..630928 1 NC_012440.1 identified by match to protein family HMM PF01230; protein hit 630928 7674250 PERMA_0670 Persephonella marina EX-H1 protein hit YP_002730459.1 630551 D 123214 CDS YP_002730460.1 225850226 7674275 630948..631223 1 NC_012440.1 identified by Glimmer3; hypothetical protein 631223 7674275 PERMA_0671 Persephonella marina EX-H1 hypothetical protein YP_002730460.1 630948 D 123214 CDS YP_002730461.1 225850227 7674917 complement(631725..632114) 1 NC_012440.1 identified by match to protein family HMM PF03061; nter region of initiation factor eif-2b alphsubunit A 1 632114 7674917 PERMA_0673 Persephonella marina EX-H1 nter region of initiation factor eif-2b alphsubunit A 1 YP_002730461.1 631725 R 123214 CDS YP_002730462.1 225850228 7674643 complement(632092..633807) 1 NC_012440.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; division specific D,D-transpeptidase 633807 7674643 PERMA_0674 Persephonella marina EX-H1 division specific D,D-transpeptidase YP_002730462.1 632092 R 123214 CDS YP_002730463.1 225850229 7675448 complement(633818..634123) 1 NC_012440.1 identified by match to protein family HMM PF04977; match to protein family HMM TIGR02209; cell division protein FtsL 634123 ftsL 7675448 ftsL Persephonella marina EX-H1 cell division protein FtsL YP_002730463.1 633818 R 123214 CDS YP_002730464.1 225850230 7676136 complement(634125..635006) 1 NC_012440.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 635006 mraW 7676136 mraW Persephonella marina EX-H1 S-adenosyl-methyltransferase MraW YP_002730464.1 634125 R 123214 CDS YP_002730465.1 225850231 7674443 complement(635009..635785) 1 NC_012440.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein 635785 7674443 PERMA_0677 Persephonella marina EX-H1 metallo-beta-lactamase family protein YP_002730465.1 635009 R 123214 CDS YP_002730466.1 225850232 7675210 complement(635775..636245) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 636245 7675210 PERMA_0678 Persephonella marina EX-H1 hypothetical protein YP_002730466.1 635775 R 123214 CDS YP_002730467.1 225850233 7674857 complement(636242..637627) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 637627 7674857 PERMA_0679 Persephonella marina EX-H1 hypothetical protein YP_002730467.1 636242 R 123214 CDS YP_002730468.1 225850234 7674479 complement(637642..638313) 1 NC_012440.1 identified by match to protein family HMM PF00005; macrolide export ATP-binding/permease protein MacB 638313 7674479 PERMA_0680 Persephonella marina EX-H1 macrolide export ATP-binding/permease protein MacB YP_002730468.1 637642 R 123214 CDS YP_002730469.1 225850235 7676103 complement(638310..639560) 1 NC_012440.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; secretion protein HlyD 639560 7676103 PERMA_0681 Persephonella marina EX-H1 secretion protein HlyD YP_002730469.1 638310 R 123214 CDS YP_002730470.1 225850236 7676035 complement(639545..640807) 1 NC_012440.1 identified by match to protein family HMM PF02321; outer membrane efflux protein 640807 7676035 PERMA_0682 Persephonella marina EX-H1 outer membrane efflux protein YP_002730470.1 639545 R 123214 CDS YP_002730471.1 225850237 7675609 complement(640810..641301) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 641301 7675609 PERMA_0683 Persephonella marina EX-H1 hypothetical protein YP_002730471.1 640810 R 123214 CDS YP_002730472.1 225850238 7674544 641430..644273 1 NC_012440.1 identified by match to protein family HMM PF00133; match to protein family HMM PF06827; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00392; isoleucine#tRNA ligase 644273 ileS 7674544 ileS Persephonella marina EX-H1 isoleucine#tRNA ligase YP_002730472.1 641430 D 123214 CDS YP_002730473.1 225850239 7675529 644270..644557 1 NC_012440.1 identified by match to protein family HMM PF00216; DNA-binding protein HU 1 (DNA-binding protein II) (HB) 644557 7675529 PERMA_0685 Persephonella marina EX-H1 DNA-binding protein HU 1 (DNA-binding protein II) (HB) YP_002730473.1 644270 D 123214 CDS YP_002730474.1 225850240 7674773 complement(644566..645126) 1 NC_012440.1 identified by match to protein family HMM PF08645; match to protein family HMM TIGR00213; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662; D,D-heptose 1,7-bisphosphate phosphatase 645126 7674773 PERMA_0686 Persephonella marina EX-H1 D,D-heptose 1,7-bisphosphate phosphatase YP_002730474.1 644566 R 123214 CDS YP_002730475.1 225850241 7674521 complement(645127..645612) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 645612 7674521 PERMA_0687 Persephonella marina EX-H1 hypothetical protein YP_002730475.1 645127 R 123214 CDS YP_002730476.1 225850242 7675993 complement(645663..645824) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 645824 7675993 PERMA_0688 Persephonella marina EX-H1 hypothetical protein YP_002730476.1 645663 R 123214 CDS YP_002730477.1 225850243 7675808 645928..646413 1 NC_012440.1 identified by match to protein family HMM PF02943; ferredoxin-thioredoxin reductase catalytic subunit 646413 7675808 PERMA_0689 Persephonella marina EX-H1 ferredoxin-thioredoxin reductase catalytic subunit YP_002730477.1 645928 D 123214 CDS YP_002730478.1 225850244 7674438 646410..646652 1 NC_012440.1 identified by Glimmer3; hypothetical protein 646652 7674438 PERMA_0691 Persephonella marina EX-H1 hypothetical protein YP_002730478.1 646410 D 123214 CDS YP_002730479.1 225850245 7674973 complement(646645..647931) 1 NC_012440.1 identified by match to protein family HMM PF00374; nickel-dependent hydrogenase large subunit 647931 7674973 PERMA_0690 Persephonella marina EX-H1 nickel-dependent hydrogenase large subunit YP_002730479.1 646645 R 123214 CDS YP_002730480.1 225850246 7675718 complement(647928..648677) 1 NC_012440.1 identified by match to protein family HMM PF01058; [NiFe] hydrogenase, deltsubunit A 648677 7675718 PERMA_0692 Persephonella marina EX-H1 [NiFe] hydrogenase, deltsubunit A YP_002730480.1 647928 R 123214 CDS YP_002730481.1 225850247 7675355 complement(648674..649480) 1 NC_012440.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00970; [NiFe] hydrogenasegammsubunit A 649480 7675355 PERMA_0693 Persephonella marina EX-H1 [NiFe] hydrogenasegammsubunit A YP_002730481.1 648674 R 123214 CDS YP_002730482.1 225850248 7674471 complement(649473..650564) 1 NC_012440.1 [NiFe] hydrogenase, betsubunit A 650564 7674471 PERMA_0694 Persephonella marina EX-H1 [NiFe] hydrogenase, betsubunit A YP_002730482.1 649473 R 123214 CDS YP_002730483.1 225850249 7675559 650713..651957 1 NC_012440.1 identified by match to protein family HMM PF01058; match to protein family HMM PF08425; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409; quinone-reactive Ni/Fe-hydrogenase small chain (Membrane-bound hydrogenase small subunit) (Hydrogen:quinoneoxidoreductase) 651957 7675559 PERMA_0695 Persephonella marina EX-H1 quinone-reactive Ni/Fe-hydrogenase small chain (Membrane-bound hydrogenase small subunit) (Hydrogen:quinoneoxidoreductase) YP_002730483.1 650713 D 123214 CDS YP_002730484.1 225850250 7674974 651978..653738 1 NC_012440.1 identified by match to protein family HMM PF00374; uptake hydrogenase large subunit (Hydrogenlyase)(Membrane-bound hydrogenase large subunit) 653738 7674974 PERMA_0696 Persephonella marina EX-H1 uptake hydrogenase large subunit (Hydrogenlyase)(Membrane-bound hydrogenase large subunit) YP_002730484.1 651978 D 123214 CDS YP_002730485.1 225850251 7675323 653731..654420 1 NC_012440.1 identified by match to protein family HMM PF01292; Ni-Fe hydrogenase, cytochrome B subunit 654420 7675323 PERMA_0697 Persephonella marina EX-H1 Ni-Fe hydrogenase, cytochrome B subunit YP_002730485.1 653731 D 123214 CDS YP_002730486.1 225850252 7674482 654495..654872 1 NC_012440.1 hypothetical protein 654872 7674482 PERMA_0698 Persephonella marina EX-H1 hypothetical protein YP_002730486.1 654495 D 123214 CDS YP_002730487.1 225850253 7676162 654856..655770 1 NC_012440.1 identified by match to protein family HMM PF00092; von Willebrand factor type A domain protein 655770 7676162 PERMA_0699 Persephonella marina EX-H1 von Willebrand factor type A domain protein YP_002730487.1 654856 D 123214 CDS YP_002730488.1 225850254 7675090 655763..657274 1 NC_012440.1 identified by Glimmer3; hypothetical protein 657274 7675090 PERMA_0700 Persephonella marina EX-H1 hypothetical protein YP_002730488.1 655763 D 123214 CDS YP_002730489.1 225850255 7674491 657275..658615 1 NC_012440.1 identified by match to protein family HMM PF00092; von Willebrand factor, type A 658615 7674491 PERMA_0701 Persephonella marina EX-H1 von Willebrand factor, type A YP_002730489.1 657275 D 123214 CDS YP_002730490.1 225850256 7676121 658684..659649 1 NC_012440.1 identified by match to protein family HMM PF07726; match to protein family HMM PF07728; ATPase, MoxR family 659649 moxR 7676121 moxR Persephonella marina EX-H1 ATPase, MoxR family YP_002730490.1 658684 D 123214 CDS YP_002730491.1 225850257 7675677 659646..660452 1 NC_012440.1 hypothetical protein 660452 7675677 PERMA_0703 Persephonella marina EX-H1 hypothetical protein YP_002730491.1 659646 D 123214 CDS YP_002730492.1 225850258 7675928 660513..662756 1 NC_012440.1 identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143; (NiFe) hydrogenase maturation protein HypF 662756 hypF 7675928 hypF Persephonella marina EX-H1 (NiFe) hydrogenase maturation protein HypF YP_002730492.1 660513 D 123214 CDS YP_002730493.1 225850259 7675856 complement(662745..663059) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 663059 7675856 PERMA_0704 Persephonella marina EX-H1 hypothetical protein YP_002730493.1 662745 R 123214 CDS YP_002730494.1 225850260 7675382 complement(663123..664172) 1 NC_012440.1 identified by match to protein family HMM PF01312; match to protein family HMM TIGR00328; flagellar biosynthetic protein FlhB 664172 flhB 7675382 flhB Persephonella marina EX-H1 flagellar biosynthetic protein FlhB YP_002730494.1 663123 R 123214 CDS YP_002730495.1 225850261 7674309 complement(664173..664955) 1 NC_012440.1 identified by match to protein family HMM PF01311; flagellar biosynthetic protein FliR 664955 7674309 PERMA_0707 Persephonella marina EX-H1 flagellar biosynthetic protein FliR YP_002730495.1 664173 R 123214 CDS YP_002730496.1 225850262 7675866 complement(664958..665227) 1 NC_012440.1 identified by match to protein family HMM PF01313; match to protein family HMM TIGR01402; flagellar biosynthetic protein FliQ 665227 fliQ 7675866 fliQ Persephonella marina EX-H1 flagellar biosynthetic protein FliQ YP_002730496.1 664958 R 123214 CDS YP_002730497.1 225850263 7674758 complement(665235..665903) 1 NC_012440.1 identified by match to protein family HMM PF00813; match to protein family HMM TIGR01103; flagellar biosynthetic protein FliP 665903 fliP 7674758 fliP Persephonella marina EX-H1 flagellar biosynthetic protein FliP YP_002730497.1 665235 R 123214 CDS YP_002730498.1 225850264 7674226 complement(665929..666231) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 666231 7674226 PERMA_0710 Persephonella marina EX-H1 hypothetical protein YP_002730498.1 665929 R 123214 CDS YP_002730499.1 225850265 7675841 complement(666224..666463) 1 NC_012440.1 identified by match to protein family HMM PF01052; flagellar motor switch phosphatase FliY 666463 7675841 PERMA_0711 Persephonella marina EX-H1 flagellar motor switch phosphatase FliY YP_002730499.1 666224 R 123214 CDS YP_002730500.1 225850266 7674882 complement(666472..666984) 1 NC_012440.1 identified by match to protein family HMM PF03748; flagellar basal body-associated protein FliL 666984 fliL 7674882 fliL Persephonella marina EX-H1 flagellar basal body-associated protein FliL YP_002730500.1 666472 R 123214 CDS YP_002730501.1 225850267 7675681 complement(667007..668629) 1 NC_012440.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07559; match to protein family HMM TIGR03506; flagellar basal body and hook protein FlgE 668629 7675681 PERMA_0713 Persephonella marina EX-H1 flagellar basal body and hook protein FlgE YP_002730501.1 667007 R 123214 CDS YP_002730502.1 225850268 7675363 complement(668634..669281) 1 NC_012440.1 identified by match to protein family HMM PF03963; flagellar hook capping protein FlgD 669281 7675363 PERMA_0714 Persephonella marina EX-H1 flagellar hook capping protein FlgD YP_002730502.1 668634 R 123214 CDS YP_002730503.1 225850269 7674506 complement(669259..670590) 1 NC_012440.1 identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; match to protein family HMM TIGR03496; flagellar protein export ATPase FliI 670590 fliI 7674506 fliI Persephonella marina EX-H1 flagellar protein export ATPase FliI YP_002730503.1 669259 R 123214 CDS YP_002730504.1 225850270 7676083 complement(670550..671227) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 671227 7676083 PERMA_0716 Persephonella marina EX-H1 hypothetical protein YP_002730504.1 670550 R 123214 CDS YP_002730505.1 225850271 7674968 complement(671229..672818) 1 NC_012440.1 identified by match to protein family HMM PF01514; match to protein family HMM PF08345; match to protein family HMM TIGR00206; flagellar M-ring protein FliF 672818 fliF 7674968 fliF Persephonella marina EX-H1 flagellar M-ring protein FliF YP_002730505.1 671229 R 123214 CDS YP_002730506.1 225850272 7675330 complement(672831..673115) 1 NC_012440.1 identified by match to protein family HMM PF02049; match to protein family HMM TIGR00205; flagellar hook-basal body complex protein FliE 673115 fliE 7675330 fliE Persephonella marina EX-H1 flagellar hook-basal body complex protein FliE YP_002730506.1 672831 R 123214 CDS YP_002730507.1 225850273 7674980 complement(673137..673547) 1 NC_012440.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR01395; flagellar basal-body rod protein FlgC 673547 flgC 7674980 flgC Persephonella marina EX-H1 flagellar basal-body rod protein FlgC YP_002730507.1 673137 R 123214 CDS YP_002730508.1 225850274 7675296 complement(673562..673939) 1 NC_012440.1 identified by match to protein family HMM TIGR01396; flagellar basal-body rod protein FlgB 673939 flgB 7675296 flgB Persephonella marina EX-H1 flagellar basal-body rod protein FlgB YP_002730508.1 673562 R 123214 CDS YP_002730509.1 225850275 7675831 complement(673936..675888) 1 NC_012440.1 hypothetical protein 675888 7675831 PERMA_0721 Persephonella marina EX-H1 hypothetical protein YP_002730509.1 673936 R 123214 CDS YP_002730510.1 225850276 7674657 complement(675875..677566) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 677566 7674657 PERMA_0722 Persephonella marina EX-H1 hypothetical protein YP_002730510.1 675875 R 123214 CDS YP_002730511.1 225850277 7674720 complement(677627..678256) 1 NC_012440.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; RNA polymerase sigma factor for flagellar operon 678256 7674720 PERMA_0723 Persephonella marina EX-H1 RNA polymerase sigma factor for flagellar operon YP_002730511.1 677627 R 123214 CDS YP_002730512.1 225850278 7674189 complement(678260..679117) 1 NC_012440.1 identified by match to protein family HMM PF01656; flagellar biosynthesis switch protein FlhG 679117 7674189 PERMA_0724 Persephonella marina EX-H1 flagellar biosynthesis switch protein FlhG YP_002730512.1 678260 R 123214 CDS YP_002730513.1 225850279 7674325 complement(679128..680252) 1 NC_012440.1 identified by match to protein family HMM PF00448; match to protein family HMM TIGR03499; flagellar biosynthetic protein FlhF 680252 flhF 7674325 flhF Persephonella marina EX-H1 flagellar biosynthetic protein FlhF YP_002730513.1 679128 R 123214 CDS YP_002730514.1 225850280 7675268 complement(680242..682329) 1 NC_012440.1 identified by match to protein family HMM PF00771; match to protein family HMM TIGR01398; flagellar biosynthesis protein FlhA 682329 flhA 7675268 flhA Persephonella marina EX-H1 flagellar biosynthesis protein FlhA YP_002730514.1 680242 R 123214 CDS YP_002730515.1 225850281 7674286 complement(682330..682617) 1 NC_012440.1 hypothetical protein 682617 7674286 PERMA_0727 Persephonella marina EX-H1 hypothetical protein YP_002730515.1 682330 R 123214 CDS YP_002730516.1 225850282 7675226 complement(682627..683715) 1 NC_012440.1 identified by match to protein family HMM PF02119; flagellar P-ring protein FlgI 683715 flgI 7675226 flgI Persephonella marina EX-H1 flagellar P-ring protein FlgI YP_002730516.1 682627 R 123214 CDS YP_002730517.1 225850283 7675735 complement(683725..684180) 1 NC_012440.1 identified by match to protein family HMM PF02107; flagellar L-ring protein FlgH 684180 flgH 7675735 flgH Persephonella marina EX-H1 flagellar L-ring protein FlgH YP_002730517.1 683725 R 123214 CDS YP_002730518.1 225850284 7674585 complement(684366..685304) 1 NC_012440.1 identified by match to protein family HMM PF08666; match to protein family HMM TIGR03170; flagellar protein FlgA 685304 7674585 PERMA_0730 Persephonella marina EX-H1 flagellar protein FlgA YP_002730518.1 684366 R 123214 CDS YP_002730519.1 225850285 7676118 complement(685285..686085) 1 NC_012440.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02488; match to protein family HMM TIGR03506; flagellar basal-body rod protein FlgG 686085 flgG 7676118 flgG Persephonella marina EX-H1 flagellar basal-body rod protein FlgG YP_002730519.1 685285 R 123214 CDS YP_002730520.1 225850286 7675074 complement(686101..686817) 1 NC_012440.1 identified by match to protein family HMM PF00460; match to protein family HMM TIGR03506; flagellar basal-body rod protein FlgF 686817 7675074 PERMA_0732 Persephonella marina EX-H1 flagellar basal-body rod protein FlgF YP_002730520.1 686101 R 123214 CDS YP_002730521.1 225850287 7674383 complement(686871..687443) 1 NC_012440.1 identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480; flagellar motor switch protein FliN 687443 7674383 PERMA_0733 Persephonella marina EX-H1 flagellar motor switch protein FliN YP_002730521.1 686871 R 123214 CDS YP_002730522.1 225850288 7675842 complement(687436..688407) 1 NC_012440.1 identified by match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397; flagellar motor switch protein FliM 688407 fliM 7675842 fliM Persephonella marina EX-H1 flagellar motor switch protein FliM YP_002730522.1 687436 R 123214 CDS YP_002730523.1 225850289 7675666 complement(688419..689444) 1 NC_012440.1 identified by match to protein family HMM PF01706; match to protein family HMM TIGR00207; flagellar motor switch protein FliG 689444 fliG 7675666 fliG Persephonella marina EX-H1 flagellar motor switch protein FliG YP_002730523.1 688419 R 123214 CDS YP_002730524.1 225850290 7674981 complement(689446..690096) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 690096 7674981 PERMA_0736 Persephonella marina EX-H1 hypothetical protein YP_002730524.1 689446 R 123214 CDS YP_002730525.1 225850291 7675340 complement(690089..691885) 1 NC_012440.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis transducer 691885 7675340 PERMA_0737 Persephonella marina EX-H1 methyl-accepting chemotaxis transducer YP_002730525.1 690089 R 123214 CDS YP_002730526.1 225850292 7674478 complement(691888..693792) 1 NC_012440.1 identified by match to protein family HMM PF00015; Methyl-accepting chemotaxis protein signaling domain protein 693792 7674478 PERMA_0738 Persephonella marina EX-H1 Methyl-accepting chemotaxis protein signaling domain protein YP_002730526.1 691888 R 123214 CDS YP_002730527.1 225850293 7674865 complement(693824..694219) 1 NC_012440.1 identified by match to protein family HMM PF00072; chemotactic response regulator CheY 694219 7674865 PERMA_0739 Persephonella marina EX-H1 chemotactic response regulator CheY YP_002730527.1 693824 R 123214 CDS YP_002730528.1 225850294 7675906 complement(694230..695192) 1 NC_012440.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01584; chemotactic response regulator CheV 695192 7675906 PERMA_0740 Persephonella marina EX-H1 chemotactic response regulator CheV YP_002730528.1 694230 R 123214 CDS YP_002730529.1 225850295 7676186 complement(695214..695708) 1 NC_012440.1 identified by match to protein family HMM PF01584; purine-binding chemotaxis protein CheW 695708 7676186 PERMA_0741 Persephonella marina EX-H1 purine-binding chemotaxis protein CheW YP_002730529.1 695214 R 123214 CDS YP_002730530.1 225850296 7674514 complement(695708..697687) 1 NC_012440.1 identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; chemotaxis protein CheA 697687 7674514 PERMA_0742 Persephonella marina EX-H1 chemotaxis protein CheA YP_002730530.1 695708 R 123214 CDS YP_002730531.1 225850297 7676167 complement(697709..698233) 1 NC_012440.1 myosin-2 heavy chain, non muscle 698233 7676167 PERMA_0743 Persephonella marina EX-H1 myosin-2 heavy chain, non muscle YP_002730531.1 697709 R 123214 CDS YP_002730532.1 225850298 7675809 complement(698214..699245) 1 NC_012440.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01339; chemotaxis response regulator protein-glutamate methylesterase 699245 7675809 PERMA_0744 Persephonella marina EX-H1 chemotaxis response regulator protein-glutamate methylesterase YP_002730532.1 698214 R 123214 CDS YP_002730533.1 225850299 7674621 complement(699242..700009) 1 NC_012440.1 identified by match to protein family HMM PF01739; chemotaxis protein CheR 700009 cheR 7674621 cheR Persephonella marina EX-H1 chemotaxis protein CheR YP_002730533.1 699242 R 123214 CDS YP_002730534.1 225850300 7674678 700073..700426 1 NC_012440.1 hypothetical protein 700426 7674678 PERMA_0746 Persephonella marina EX-H1 hypothetical protein YP_002730534.1 700073 D 123214 CDS YP_002730535.1 225850301 7674966 complement(700443..701753) 1 NC_012440.1 identified by match to protein family HMM PF02040; match to protein family HMM PF03600; arsenic transporter family protein 701753 7674966 PERMA_0747 Persephonella marina EX-H1 arsenic transporter family protein YP_002730535.1 700443 R 123214 CDS YP_002730536.1 225850302 7676011 complement(701791..702525) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 702525 7676011 PERMA_0748 Persephonella marina EX-H1 hypothetical protein YP_002730536.1 701791 R 123214 CDS YP_002730537.1 225850303 7675594 complement(702671..703537) 1 NC_012440.1 identified by match to protein family HMM PF01435; protease HtpX homolog 703537 7675594 PERMA_0749 Persephonella marina EX-H1 protease HtpX homolog YP_002730537.1 702671 R 123214 CDS YP_002730538.1 225850304 7676116 703652..705337 1 NC_012440.1 identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; diguanylate cyclase/phosphodiesterase domain 1 705337 7676116 PERMA_0750 Persephonella marina EX-H1 diguanylate cyclase/phosphodiesterase domain 1 YP_002730538.1 703652 D 123214 CDS YP_002730539.1 225850305 7674345 complement(705358..707226) 1 NC_012440.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 707226 dnaK 7674345 dnaK Persephonella marina EX-H1 molecular chaperone DnaK YP_002730539.1 705358 R 123214 CDS YP_002730540.1 225850306 7675852 707369..707878 1 NC_012440.1 hypothetical protein 707878 7675852 PERMA_0752 Persephonella marina EX-H1 hypothetical protein YP_002730540.1 707369 D 123214 CDS YP_002730541.1 225850307 7675522 707878..709566 1 NC_012440.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851; helicase, Snf2 family 709566 7675522 PERMA_0753 Persephonella marina EX-H1 helicase, Snf2 family YP_002730541.1 707878 D 123214 CDS YP_002730542.1 225850308 7675240 709577..710965 1 NC_012440.1 identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229; potential sensory protein 710965 7675240 PERMA_0754 Persephonella marina EX-H1 potential sensory protein YP_002730542.1 709577 D 123214 CDS YP_002730543.1 225850309 7674666 710976..711299 1 NC_012440.1 identified by match to protein family HMM PF03091; periplasmic divalent cation tolerance protein 711299 7674666 PERMA_0755 Persephonella marina EX-H1 periplasmic divalent cation tolerance protein YP_002730543.1 710976 D 123214 CDS YP_002730544.1 225850310 7675460 711342..712208 1 NC_012440.1 identified by match to protein family HMM PF01145; band 7 protein 712208 7675460 PERMA_0756 Persephonella marina EX-H1 band 7 protein YP_002730544.1 711342 D 123214 CDS YP_002730545.1 225850311 7674473 712361..715348 1 NC_012440.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; ClpB 715348 7674473 PERMA_0757 Persephonella marina EX-H1 ClpB YP_002730545.1 712361 D 123214 CDS YP_002730546.1 225850312 7675883 complement(715370..717982) 1 NC_012440.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 717982 mutS 7675883 mutS Persephonella marina EX-H1 DNA mismatch repair protein MutS YP_002730546.1 715370 R 123214 CDS YP_002730547.1 225850313 7675173 complement(718014..718841) 1 NC_012440.1 identified by match to protein family HMM PF01551; peptidase, M23/M37 family 718841 7675173 PERMA_0759 Persephonella marina EX-H1 peptidase, M23/M37 family YP_002730547.1 718014 R 123214 CDS YP_002730548.1 225850314 7674267 718924..720240 1 NC_012440.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 720240 miaB 7674267 miaB Persephonella marina EX-H1 (dimethylallyl)adenosine tRNA methylthiotransferase YP_002730548.1 718924 D 123214 CDS YP_002730549.1 225850315 7674452 720257..720736 1 NC_012440.1 identified by match to protein family HMM PF02577; hypothetical protein 720736 7674452 PERMA_0762 Persephonella marina EX-H1 hypothetical protein YP_002730549.1 720257 D 123214 CDS YP_002730550.1 225850316 7674211 complement(720733..721674) 1 NC_012440.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 721674 7674211 PERMA_0761 Persephonella marina EX-H1 3-oxoacyl-(acyl carrier protein) synthase III YP_002730550.1 720733 R 123214 CDS YP_002730551.1 225850317 7675992 complement(721680..722696) 1 NC_012440.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 722696 plsX 7675992 plsX Persephonella marina EX-H1 glycerol-3-phosphate acyltransferase PlsX YP_002730551.1 721680 R 123214 CDS YP_002730552.1 225850318 7676040 complement(722697..722879) 1 NC_012440.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 722879 rpmF 7676040 rpmF Persephonella marina EX-H1 50S ribosomal protein L32 YP_002730552.1 722697 R 123214 CDS YP_002730553.1 225850319 7674937 complement(723119..724294) 1 NC_012440.1 identified by match to protein family HMM PF00155; match to protein family HMM TIGR03537; succinyldiaminopimelate transaminase 724294 dapC 7674937 dapC Persephonella marina EX-H1 succinyldiaminopimelate transaminase YP_002730553.1 723119 R 123214 CDS YP_002730554.1 225850320 7675401 724369..724935 1 NC_012440.1 identified by Glimmer3; hypothetical protein 724935 7675401 PERMA_0767 Persephonella marina EX-H1 hypothetical protein YP_002730554.1 724369 D 123214 CDS YP_002730555.1 225850321 7675252 724898..725629 1 NC_012440.1 identified by match to protein family HMM PF00106; oxidoreductase, short chain dehydrogenase/reductase family 725629 7675252 PERMA_0769 Persephonella marina EX-H1 oxidoreductase, short chain dehydrogenase/reductase family YP_002730555.1 724898 D 123214 CDS YP_002730556.1 225850322 7674694 complement(725626..726537) 1 NC_012440.1 identified by match to protein family HMM PF03631; hypothetical protein 726537 7674694 PERMA_0768 Persephonella marina EX-H1 hypothetical protein YP_002730556.1 725626 R 123214 CDS YP_002730557.1 225850323 7674864 complement(726534..726827) 1 NC_012440.1 hypothetical protein 726827 7674864 PERMA_0770 Persephonella marina EX-H1 hypothetical protein YP_002730557.1 726534 R 123214 CDS YP_002730558.1 225850324 7674867 complement(726837..727121) 1 NC_012440.1 hypothetical protein 727121 7674867 PERMA_0771 Persephonella marina EX-H1 hypothetical protein YP_002730558.1 726837 R 123214 CDS YP_002730559.1 225850325 7675854 complement(727132..727371) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 727371 7675854 PERMA_0772 Persephonella marina EX-H1 hypothetical protein YP_002730559.1 727132 R 123214 CDS YP_002730560.1 225850326 7676010 complement(727385..727771) 1 NC_012440.1 identified by match to protein family HMM PF02566; OsmC family protein 727771 7676010 PERMA_0773 Persephonella marina EX-H1 OsmC family protein YP_002730560.1 727385 R 123214 CDS YP_002730561.1 225850327 7675061 complement(727781..728638) 1 NC_012440.1 identified by match to protein family HMM PF01145; band 7 protein 728638 7675061 PERMA_0774 Persephonella marina EX-H1 band 7 protein YP_002730561.1 727781 R 123214 CDS YP_002730562.1 225850328 7675314 728746..728925 1 NC_012440.1 identified by Glimmer3; hypothetical protein 728925 7675314 PERMA_0776 Persephonella marina EX-H1 hypothetical protein YP_002730562.1 728746 D 123214 CDS YP_002730563.1 225850329 7675696 complement(728922..729077) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 729077 7675696 PERMA_0775 Persephonella marina EX-H1 hypothetical protein YP_002730563.1 728922 R 123214 CDS YP_002730564.1 225850330 7675604 complement(729135..731123) 1 NC_012440.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 731123 uvrB 7675604 uvrB Persephonella marina EX-H1 excinuclease ABC subunit B YP_002730564.1 729135 R 123214 CDS YP_002730565.1 225850331 7675015 731197..731808 1 NC_012440.1 identified by match to protein family HMM PF01596; O-methyltransferase, family 3 731808 7675015 PERMA_0778 Persephonella marina EX-H1 O-methyltransferase, family 3 YP_002730565.1 731197 D 123214 CDS YP_002730566.1 225850332 7675862 complement(731969..732859) 1 NC_012440.1 identified by match to protein family HMM PF00535; glycosyl transferase, family 2 732859 7675862 PERMA_0779 Persephonella marina EX-H1 glycosyl transferase, family 2 YP_002730566.1 731969 R 123214 CDS YP_002730567.1 225850333 7675777 complement(732861..733619) 1 NC_012440.1 identified by match to protein family HMM PF00535; lipopolysaccharide core biosynthesis glycosyltransferase WaaE 733619 7675777 PERMA_0780 Persephonella marina EX-H1 lipopolysaccharide core biosynthesis glycosyltransferase WaaE YP_002730567.1 732861 R 123214 CDS YP_002730568.1 225850334 7674862 complement(733685..734650) 1 NC_012440.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666; molybdenum cofactor biosynthesis protein A 734650 moaA 7674862 moaA Persephonella marina EX-H1 molybdenum cofactor biosynthesis protein A YP_002730568.1 733685 R 123214 CDS YP_002730569.1 225850335 7676159 complement(734792..735625) 1 NC_012440.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; hypothetical protein 735625 7676159 PERMA_0782 Persephonella marina EX-H1 hypothetical protein YP_002730569.1 734792 R 123214 CDS YP_002730570.1 225850336 7675941 complement(735625..736434) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 736434 7675941 PERMA_0783 Persephonella marina EX-H1 hypothetical protein YP_002730570.1 735625 R 123214 CDS YP_002730571.1 225850337 7675574 736541..738367 1 NC_012440.1 identified by match to protein family HMM PF00133; match to protein family HMM PF09334; match to protein family HMM TIGR00396; leucyl-tRNA synthetase 738367 leuS 7675574 leuS Persephonella marina EX-H1 leucyl-tRNA synthetase YP_002730571.1 736541 D 123214 CDS YP_002730572.1 225850338 7675783 738437..739561 1 NC_012440.1 identified by match to protein family HMM PF01637; ATPase 739561 7675783 PERMA_0785 Persephonella marina EX-H1 ATPase YP_002730572.1 738437 D 123214 CDS YP_002730573.1 225850339 7675397 739963..740826 1 NC_012440.1 identified by match to protein family HMM PF08264; leucyl-tRNA synthetase subunit beta (Leucine--tRNA ligasesubunit beta) (LeuRS) 740826 7675397 PERMA_0786 Persephonella marina EX-H1 leucyl-tRNA synthetase subunit beta (Leucine--tRNA ligasesubunit beta) (LeuRS) YP_002730573.1 739963 D 123214 CDS YP_002730574.1 225850340 7676056 740837..741271 1 NC_012440.1 identified by match to protein family HMM PF00582; stress response protein 741271 7676056 PERMA_0788 Persephonella marina EX-H1 stress response protein YP_002730574.1 740837 D 123214 CDS YP_002730575.1 225850341 7674771 complement(741257..741826) 1 NC_012440.1 DedA family protein 741826 7674771 PERMA_0787 Persephonella marina EX-H1 DedA family protein YP_002730575.1 741257 R 123214 CDS YP_002730576.1 225850342 7674206 complement(741857..742363) 1 NC_012440.1 identified by match to protein family HMM PF02517; caax amino protease family protein 742363 7674206 PERMA_0789 Persephonella marina EX-H1 caax amino protease family protein YP_002730576.1 741857 R 123214 CDS YP_002730577.1 225850343 7675032 complement(742363..744234) 1 NC_012440.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 744234 gidA 7675032 gidA Persephonella marina EX-H1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA YP_002730577.1 742363 R 123214 CDS YP_002730578.1 225850344 7675765 744368..745639 1 NC_012440.1 hypothetical protein 745639 7675765 PERMA_0792 Persephonella marina EX-H1 hypothetical protein YP_002730578.1 744368 D 123214 CDS YP_002730579.1 225850345 7674207 complement(745636..746070) 1 NC_012440.1 identified by match to protein family HMM PF04417; hypothetical protein 746070 7674207 PERMA_0791 Persephonella marina EX-H1 hypothetical protein YP_002730579.1 745636 R 123214 CDS YP_002730580.1 225850346 7675081 complement(746057..747904) 1 NC_012440.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; response regulator 747904 7675081 PERMA_0793 Persephonella marina EX-H1 response regulator YP_002730580.1 746057 R 123214 CDS YP_002730581.1 225850347 7676082 747968..748516 1 NC_012440.1 identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258; 2'-5' RNA ligase 748516 7676082 PERMA_0794 Persephonella marina EX-H1 2'-5' RNA ligase YP_002730581.1 747968 D 123214 CDS YP_002730582.1 225850348 7676157 748621..749988 1 NC_012440.1 identified by match to protein family HMM PF01964; match to protein family HMM TIGR00190; thiamine biosynthesis protein ThiC 749988 thiC 7676157 thiC Persephonella marina EX-H1 thiamine biosynthesis protein ThiC YP_002730582.1 748621 D 123214 CDS YP_002730583.1 225850349 7675577 750028..750999 1 NC_012440.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; nitrogen regulation protein NtrB 750999 7675577 PERMA_0796 Persephonella marina EX-H1 nitrogen regulation protein NtrB YP_002730583.1 750028 D 123214 CDS YP_002730584.1 225850350 7674667 751002..752381 1 NC_012440.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; nitrogen regulation protein 752381 7674667 PERMA_0797 Persephonella marina EX-H1 nitrogen regulation protein YP_002730584.1 751002 D 123214 CDS YP_002730585.1 225850351 7675110 752419..753717 1 NC_012440.1 identified by match to protein family HMM PF00515; match to protein family HMM PF05036; match to protein family HMM PF07719; TPR Domain containing protein 753717 7675110 PERMA_0798 Persephonella marina EX-H1 TPR Domain containing protein YP_002730585.1 752419 D 123214 CDS YP_002730586.1 225850352 7675254 753725..754687 1 NC_012440.1 identified by match to protein family HMM PF00535; UDP-phosphate 4-deoxy-4-formamido-L-arabinose transferase 754687 7675254 PERMA_0799 Persephonella marina EX-H1 UDP-phosphate 4-deoxy-4-formamido-L-arabinose transferase YP_002730586.1 753725 D 123214 CDS YP_002730587.1 225850353 7674628 754689..755552 1 NC_012440.1 hypothetical protein 755552 7674628 PERMA_0800 Persephonella marina EX-H1 hypothetical protein YP_002730587.1 754689 D 123214 CDS YP_002730588.1 225850354 7675284 complement(755553..756518) 1 NC_012440.1 WD40 repeat-containing protein 756518 7675284 PERMA_0801 Persephonella marina EX-H1 WD40 repeat-containing protein YP_002730588.1 755553 R 123214 CDS YP_002730589.1 225850355 7674579 756629..757183 1 NC_012440.1 identified by match to protein family HMM PF00440; transcriptional regulator 757183 7674579 PERMA_0802 Persephonella marina EX-H1 transcriptional regulator YP_002730589.1 756629 D 123214 CDS YP_002730590.1 225850356 7674509 757180..758463 1 NC_012440.1 identified by match to protein family HMM PF02321; outer membrane efflux protein 758463 7674509 PERMA_0803 Persephonella marina EX-H1 outer membrane efflux protein YP_002730590.1 757180 D 123214 CDS YP_002730591.1 225850357 7676090 758453..759580 1 NC_012440.1 identified by match to protein family HMM PF00529; multidrug-efflux transporter, MFS family 759580 7676090 PERMA_0804 Persephonella marina EX-H1 multidrug-efflux transporter, MFS family YP_002730591.1 758453 D 123214 CDS YP_002730592.1 225850358 7675149 759588..761156 1 NC_012440.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; major facilitator family transporter 761156 7675149 PERMA_0805 Persephonella marina EX-H1 major facilitator family transporter YP_002730592.1 759588 D 123214 CDS YP_002730593.1 225850359 7675989 761143..762300 1 NC_012440.1 identified by match to protein family HMM PF00529; efflux system, membrane fusion protein 762300 7675989 PERMA_0806 Persephonella marina EX-H1 efflux system, membrane fusion protein YP_002730593.1 761143 D 123214 CDS YP_002730594.1 225850360 7674746 762302..763390 1 NC_012440.1 identified by match to protein family HMM PF00924; MscS Mechanosensitive ion channel 763390 7674746 PERMA_0807 Persephonella marina EX-H1 MscS Mechanosensitive ion channel YP_002730594.1 762302 D 123214 CDS YP_002730595.1 225850361 7674314 763393..765006 1 NC_012440.1 identified by match to protein family HMM PF00005; multidrug ABC transporter 765006 7674314 PERMA_0808 Persephonella marina EX-H1 multidrug ABC transporter YP_002730595.1 763393 D 123214 CDS YP_002730596.1 225850362 7675229 765015..765437 1 NC_012440.1 identified by match to protein family HMM PF01451; protein ArsC (Arsenate reductase) (Arsenical pumpmodifier) (Low molecular weight protein-tyrosine-phosphatase) 765437 7675229 PERMA_0809 Persephonella marina EX-H1 protein ArsC (Arsenate reductase) (Arsenical pumpmodifier) (Low molecular weight protein-tyrosine-phosphatase) YP_002730596.1 765015 D 123214 CDS YP_002730597.1 225850363 7675399 765447..766556 1 NC_012440.1 identified by match to protein family HMM PF01061; multidrug ABC transporter 766556 7675399 PERMA_0810 Persephonella marina EX-H1 multidrug ABC transporter YP_002730597.1 765447 D 123214 CDS YP_002730598.1 225850364 7675406 766553..767629 1 NC_012440.1 identified by match to protein family HMM PF01061; multidrug ABC transporter permease 767629 7675406 PERMA_0811 Persephonella marina EX-H1 multidrug ABC transporter permease YP_002730598.1 766553 D 123214 CDS YP_002730599.1 225850365 7674248 767711..768568 1 NC_012440.1 identified by match to protein family HMM PF01656; chromosome partitioning protein, ATPase ParA 768568 7674248 PERMA_0812 Persephonella marina EX-H1 chromosome partitioning protein, ATPase ParA YP_002730599.1 767711 D 123214 CDS YP_002730600.1 225850366 7675875 768572..769525 1 NC_012440.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; ParB family protein 769525 7675875 PERMA_0813 Persephonella marina EX-H1 ParB family protein YP_002730600.1 768572 D 123214 CDS YP_002730601.1 225850367 7676045 769560..769967 1 NC_012440.1 identified by match to protein family HMM PF07963; match to protein family HMM PF08334; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532; general secretion pathway protein G 769967 gspG 7676045 gspG Persephonella marina EX-H1 general secretion pathway protein G YP_002730601.1 769560 D 123214 CDS YP_002730602.1 225850368 7674850 769942..770274 1 NC_012440.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; general secretion pathway protein G 770274 7674850 PERMA_0815 Persephonella marina EX-H1 general secretion pathway protein G YP_002730602.1 769942 D 123214 CDS YP_002730603.1 225850369 7674687 770264..770791 1 NC_012440.1 identified by match to protein family HMM TIGR02532; prepilin-type N- cleavage/methylation domain protein 770791 7674687 PERMA_0816 Persephonella marina EX-H1 prepilin-type N- cleavage/methylation domain protein YP_002730603.1 770264 D 123214 CDS YP_002730604.1 225850370 7675554 770793..771683 1 NC_012440.1 hypothetical protein 771683 7675554 PERMA_0817 Persephonella marina EX-H1 hypothetical protein YP_002730604.1 770793 D 123214 CDS YP_002730605.1 225850371 7674324 771693..772817 1 NC_012440.1 identified by Glimmer3; hypothetical protein 772817 7674324 PERMA_0818 Persephonella marina EX-H1 hypothetical protein YP_002730605.1 771693 D 123214 CDS YP_002730606.1 225850372 7675236 772814..773296 1 NC_012440.1 identified by Glimmer3; hypothetical protein 773296 7675236 PERMA_0819 Persephonella marina EX-H1 hypothetical protein YP_002730606.1 772814 D 123214 CDS YP_002730607.1 225850373 7674603 773365..773946 1 NC_012440.1 identified by Glimmer3; hypothetical protein 773946 7674603 PERMA_0820 Persephonella marina EX-H1 hypothetical protein YP_002730607.1 773365 D 123214 CDS YP_002730608.1 225850374 7675096 773957..775720 1 NC_012440.1 identified by match to protein family HMM PF00082; serine protease 775720 7675096 PERMA_0821 Persephonella marina EX-H1 serine protease YP_002730608.1 773957 D 123214 CDS YP_002730609.1 225850375 7675461 775713..776573 1 NC_012440.1 hypothetical protein 776573 7675461 PERMA_0822 Persephonella marina EX-H1 hypothetical protein YP_002730609.1 775713 D 123214 CDS YP_002730610.1 225850376 7674659 776560..778569 1 NC_012440.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517; general secretion pathway protein D 778569 gspD 7674659 gspD Persephonella marina EX-H1 general secretion pathway protein D YP_002730610.1 776560 D 123214 CDS YP_002730611.1 225850377 7675304 778572..780002 1 NC_012440.1 identified by match to protein family HMM PF00437; general secretion pathway protein E (Type II traffic warden ATPase)(Cholera toxin secretion protein EpsE) 780002 7675304 PERMA_0824 Persephonella marina EX-H1 general secretion pathway protein E (Type II traffic warden ATPase)(Cholera toxin secretion protein EpsE) YP_002730611.1 778572 D 123214 CDS YP_002730612.1 225850378 7674832 780005..781207 1 NC_012440.1 identified by match to protein family HMM PF00482; fimbrial assembly protein PilC2 781207 7674832 PERMA_0826 Persephonella marina EX-H1 fimbrial assembly protein PilC2 YP_002730612.1 780005 D 123214 CDS YP_002730613.1 225850379 7675006 complement(781200..781826) 1 NC_012440.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; S-adenosylmethionine-dependent methyltransferase 781826 7675006 PERMA_0825 Persephonella marina EX-H1 S-adenosylmethionine-dependent methyltransferase YP_002730613.1 781200 R 123214 CDS YP_002730614.1 225850380 7676187 complement(781826..782017) 1 NC_012440.1 identified by match to protein family HMM PF00301; rubredoxin 782017 7676187 PERMA_0827 Persephonella marina EX-H1 rubredoxin YP_002730614.1 781826 R 123214 CDS YP_002730615.1 225850381 7675776 782107..782790 1 NC_012440.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; match to protein family HMM TIGR01691; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 782790 mtnC 7675776 mtnC Persephonella marina EX-H1 2,3-diketo-5-methylthio-1-phosphopentane phosphatase YP_002730615.1 782107 D 123214 CDS YP_002730616.1 225850382 7674394 complement(782777..783331) 1 NC_012440.1 ABC transporter permease 783331 7674394 PERMA_0828 Persephonella marina EX-H1 ABC transporter permease YP_002730616.1 782777 R 123214 CDS YP_002730617.1 225850383 7675562 complement(783321..783962) 1 NC_012440.1 identified by match to protein family HMM PF01891; CbiM 783962 7675562 PERMA_0830 Persephonella marina EX-H1 CbiM YP_002730617.1 783321 R 123214 CDS YP_002730618.1 225850384 7675336 complement(783972..784958) 1 NC_012440.1 hypothetical protein 784958 7675336 PERMA_0831 Persephonella marina EX-H1 hypothetical protein YP_002730618.1 783972 R 123214 CDS YP_002730619.1 225850385 7674983 complement(784942..785370) 1 NC_012440.1 hypothetical protein 785370 7674983 PERMA_0832 Persephonella marina EX-H1 hypothetical protein YP_002730619.1 784942 R 123214 CDS YP_002730620.1 225850386 7676097 complement(785372..786058) 1 NC_012440.1 hypothetical protein 786058 7676097 PERMA_0833 Persephonella marina EX-H1 hypothetical protein YP_002730620.1 785372 R 123214 CDS YP_002730621.1 225850387 7675620 786153..786869 1 NC_012440.1 identified by match to protein family HMM PF09339; transcriptional regulator, IclR family 786869 7675620 PERMA_0834 Persephonella marina EX-H1 transcriptional regulator, IclR family YP_002730621.1 786153 D 123214 CDS YP_002730622.1 225850388 7676188 787125..788303 1 NC_012440.1 identified by match to protein family HMM PF07396; Phosphate-selective porin O and P superfamily protein 788303 7676188 PERMA_0835 Persephonella marina EX-H1 Phosphate-selective porin O and P superfamily protein YP_002730622.1 787125 D 123214 CDS YP_002730623.1 225850389 7675942 788315..790216 1 NC_012440.1 identified by match to protein family HMM PF00501; match to protein family HMM TIGR02188; acetate--CoA ligase 790216 acsA_2 7675942 acsA_2 Persephonella marina EX-H1 acetate--CoA ligase YP_002730623.1 788315 D 123214 CDS YP_002730624.1 225850390 7674815 790228..790539 1 NC_012440.1 identified by match to protein family HMM PF04341; PaaW 790539 7674815 PERMA_0837 Persephonella marina EX-H1 PaaW YP_002730624.1 790228 D 123214 CDS YP_002730625.1 225850391 7675654 790544..792142 1 NC_012440.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; sodium/solute symporter family protein 792142 7675654 PERMA_0838 Persephonella marina EX-H1 sodium/solute symporter family protein YP_002730625.1 790544 D 123214 CDS YP_002730626.1 225850392 7674364 792174..793979 1 NC_012440.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00571; match to protein family HMM PF03445; nucleotidyltransferase family 793979 7674364 PERMA_0839 Persephonella marina EX-H1 nucleotidyltransferase family YP_002730626.1 792174 D 123214 CDS YP_002730627.1 225850393 7675346 793981..794601 1 NC_012440.1 identified by match to protein family HMM PF00929; DNA polymerase III subunit epsilon 794601 7675346 PERMA_0840 Persephonella marina EX-H1 DNA polymerase III subunit epsilon YP_002730627.1 793981 D 123214 CDS YP_002730628.1 225850394 7675010 794674..795789 1 NC_012440.1 identified by match to protein family HMM PF01637; ATPase 795789 7675010 PERMA_0841 Persephonella marina EX-H1 ATPase YP_002730628.1 794674 D 123214 CDS YP_002730629.1 225850395 7675602 795877..796428 1 NC_012440.1 hypothetical protein 796428 7675602 PERMA_0842 Persephonella marina EX-H1 hypothetical protein YP_002730629.1 795877 D 123214 CDS YP_002730630.1 225850396 7674877 796418..796633 1 NC_012440.1 identified by Glimmer3; hypothetical protein 796633 7674877 PERMA_0843 Persephonella marina EX-H1 hypothetical protein YP_002730630.1 796418 D 123214 CDS YP_002730631.1 225850397 7675697 796667..796888 1 NC_012440.1 identified by Glimmer3; hypothetical protein 796888 7675697 PERMA_0844 Persephonella marina EX-H1 hypothetical protein YP_002730631.1 796667 D 123214 CDS YP_002730632.1 225850398 7675553 797142..799271 1 NC_012440.1 identified by match to protein family HMM PF07503; HypF finger family 799271 7675553 PERMA_0845 Persephonella marina EX-H1 HypF finger family YP_002730632.1 797142 D 123214 CDS YP_002730633.1 225850399 7675118 799268..800368 1 NC_012440.1 identified by match to protein family HMM PF01139; gp160 800368 7675118 PERMA_0847 Persephonella marina EX-H1 gp160 YP_002730633.1 799268 D 123214 CDS YP_002730634.1 225850400 7675881 complement(800365..801483) 1 NC_012440.1 identified by match to protein family HMM PF00924; mechanosensitive ion channel MscS 801483 7675881 PERMA_0846 Persephonella marina EX-H1 mechanosensitive ion channel MscS YP_002730634.1 800365 R 123214 CDS YP_002730635.1 225850401 7675078 complement(801522..802463) 1 NC_012440.1 lipoprotein 802463 7675078 PERMA_0848 Persephonella marina EX-H1 lipoprotein YP_002730635.1 801522 R 123214 CDS YP_002730636.1 225850402 7674418 802623..803018 1 NC_012440.1 lipoprotein 803018 7674418 PERMA_0849 Persephonella marina EX-H1 lipoprotein YP_002730636.1 802623 D 123214 CDS YP_002730637.1 225850403 7676006 803041..803466 1 NC_012440.1 identified by match to protein family HMM PF03965; transcriptional repressor, CopY family 803466 7676006 PERMA_0850 Persephonella marina EX-H1 transcriptional repressor, CopY family YP_002730637.1 803041 D 123214 CDS YP_002730638.1 225850404 7675331 803453..804259 1 NC_012440.1 identified by match to protein family HMM PF01435; match to protein family HMM PF05569; peptidase, M48 family 804259 7675331 PERMA_0851 Persephonella marina EX-H1 peptidase, M48 family YP_002730638.1 803453 D 123214 CDS YP_002730639.1 225850405 7675159 804323..805504 1 NC_012440.1 identified by match to protein family HMM PF02321; outer membrane efflux protein 805504 7675159 PERMA_0852 Persephonella marina EX-H1 outer membrane efflux protein YP_002730639.1 804323 D 123214 CDS YP_002730640.1 225850406 7675605 805501..806691 1 NC_012440.1 identified by match to protein family HMM TIGR01730; chemiosmotic efflux system B protein B 806691 7675605 PERMA_0853 Persephonella marina EX-H1 chemiosmotic efflux system B protein B YP_002730640.1 805501 D 123214 CDS YP_002730641.1 225850407 7675305 806704..809841 1 NC_012440.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914; cation efflux system protein CusA 809841 7675305 PERMA_0854 Persephonella marina EX-H1 cation efflux system protein CusA YP_002730641.1 806704 D 123214 CDS YP_002730642.1 225850408 7675471 809866..810075 1 NC_012440.1 identified by Glimmer3; hypothetical protein 810075 7675471 PERMA_0855 Persephonella marina EX-H1 hypothetical protein YP_002730642.1 809866 D 123214 CDS YP_002730643.1 225850409 7676145 complement(810205..811227) 1 NC_012440.1 identified by match to protein family HMM PF04055; [pyruvate formate-lyase]-activating enzyme 811227 7676145 PERMA_0856 Persephonella marina EX-H1 [pyruvate formate-lyase]-activating enzyme YP_002730643.1 810205 R 123214 CDS YP_002730644.1 225850410 7675521 complement(811294..814425) 1 NC_012440.1 identified by match to protein family HMM PF00801; PKD domain protein 814425 7675521 PERMA_0857 Persephonella marina EX-H1 PKD domain protein YP_002730644.1 811294 R 123214 CDS YP_002730645.1 225850411 7675051 814646..816331 1 NC_012440.1 identified by match to protein family HMM PF00289; match to protein family HMM PF02786; match to protein family HMM PF02787; carbamoyl-phosphate synthase large chain, N- section (Carbamoyl-phosphate synthetase ammonia chain) 816331 7675051 PERMA_0858 Persephonella marina EX-H1 carbamoyl-phosphate synthase large chain, N- section (Carbamoyl-phosphate synthetase ammonia chain) YP_002730645.1 814646 D 123214 CDS YP_002730646.1 225850412 7674306 816395..818938 1 NC_012440.1 identified by match to protein family HMM PF00317; match to protein family HMM PF02867; match to protein family HMM PF03477; match to protein family HMM TIGR02504; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 818938 7674306 PERMA_0859 Persephonella marina EX-H1 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent YP_002730646.1 816395 D 123214 CDS YP_002730647.1 225850413 7675212 818935..819480 1 NC_012440.1 identified by match to protein family HMM PF02572; Cob(I)yrinic acid a,c-diamide adenosyltransferase (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase) 819480 7675212 PERMA_0861 Persephonella marina EX-H1 Cob(I)yrinic acid a,c-diamide adenosyltransferase (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase) YP_002730647.1 818935 D 123214 CDS YP_002730648.1 225850414 7676089 complement(819477..820067) 1 NC_012440.1 identified by match to protein family HMM PF00440; YsiA 820067 7676089 PERMA_0860 Persephonella marina EX-H1 YsiA YP_002730648.1 819477 R 123214 CDS YP_002730649.1 225850415 7676020 complement(820167..820883) 1 NC_012440.1 identified by match to protein family HMM PF09699; match to protein family HMM TIGR01905; doubled cxxch motif (paired_cxxch_1) family 820883 7676020 PERMA_0862 Persephonella marina EX-H1 doubled cxxch motif (paired_cxxch_1) family YP_002730649.1 820167 R 123214 CDS YP_002730650.1 225850416 7674480 821016..821597 1 NC_012440.1 identified by match to protein family HMM PF02441; match to protein family HMM TIGR00421; aromatic acid decarboxylase 821597 7674480 PERMA_0863 Persephonella marina EX-H1 aromatic acid decarboxylase YP_002730650.1 821016 D 123214 CDS YP_002730651.1 225850417 7675313 821584..822462 1 NC_012440.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899; phage integrase family protein 822462 7675313 PERMA_0865 Persephonella marina EX-H1 phage integrase family protein YP_002730651.1 821584 D 123214 CDS YP_002730652.1 225850418 7676194 complement(822457..823215) 1 NC_012440.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 823215 hisF 7676194 hisF Persephonella marina EX-H1 imidazole glycerol phosphate synthase subunit HisF YP_002730652.1 822457 R 123214 CDS YP_002730653.1 225850419 7675055 complement(823205..823591) 1 NC_012440.1 identified by match to protein family HMM PF01751; toprim domain protein 823591 7675055 PERMA_0866 Persephonella marina EX-H1 toprim domain protein YP_002730653.1 823205 R 123214 CDS YP_002730654.1 225850420 7675705 complement(823591..824073) 1 NC_012440.1 response regulator receiver protein 824073 7675705 PERMA_0867 Persephonella marina EX-H1 response regulator receiver protein YP_002730654.1 823591 R 123214 CDS YP_002730655.1 225850421 7674819 complement(824085..824939) 1 NC_012440.1 identified by match to protein family HMM PF02642; hypothetical protein 824939 7674819 PERMA_0868 Persephonella marina EX-H1 hypothetical protein YP_002730655.1 824085 R 123214 CDS YP_002730656.1 225850422 7674504 complement(824970..825788) 1 NC_012440.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; RNA pseudouridine synthase family protein 825788 7674504 PERMA_0869 Persephonella marina EX-H1 RNA pseudouridine synthase family protein YP_002730656.1 824970 R 123214 CDS YP_002730657.1 225850423 7674959 complement(825785..826552) 1 NC_012440.1 hydrolase, alpha/beta fold family 826552 7674959 PERMA_0870 Persephonella marina EX-H1 hydrolase, alpha/beta fold family YP_002730657.1 825785 R 123214 CDS YP_002730658.1 225850424 7674403 826606..827742 1 NC_012440.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423; match to protein family HMM TIGR03700; menaquinone biosynthesis protein, family 827742 7674403 PERMA_0871 Persephonella marina EX-H1 menaquinone biosynthesis protein, family YP_002730658.1 826606 D 123214 CDS YP_002730659.1 225850425 7675827 827744..827968 1 NC_012440.1 identified by Glimmer3; hypothetical protein 827968 7675827 PERMA_0873 Persephonella marina EX-H1 hypothetical protein YP_002730659.1 827744 D 123214 CDS YP_002730660.1 225850426 7674196 complement(827955..828845) 1 NC_012440.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux protein 828845 7674196 PERMA_0872 Persephonella marina EX-H1 cation efflux protein YP_002730660.1 827955 R 123214 CDS YP_002730661.1 225850427 7676043 828920..829879 1 NC_012440.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase, RluA family 829879 7676043 PERMA_0875 Persephonella marina EX-H1 ribosomal large subunit pseudouridine synthase, RluA family YP_002730661.1 828920 D 123214 CDS YP_002730662.1 225850428 7674525 complement(829872..831503) 1 NC_012440.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634; DNA repair protein RecN 831503 recN 7674525 recN Persephonella marina EX-H1 DNA repair protein RecN YP_002730662.1 829872 R 123214 CDS YP_002730663.1 225850429 7674775 831649..831846 1 NC_012440.1 identified by Glimmer3; hypothetical protein 831846 7674775 PERMA_0876 Persephonella marina EX-H1 hypothetical protein YP_002730663.1 831649 D 123214 CDS YP_002730664.1 225850430 7675409 831907..833091 1 NC_012440.1 identified by match to protein family HMM PF02321; outer membrane efflux protein 833091 7675409 PERMA_0877 Persephonella marina EX-H1 outer membrane efflux protein YP_002730664.1 831907 D 123214 CDS YP_002730665.1 225850431 7676169 833088..834179 1 NC_012440.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; cation efflux system 834179 7676169 PERMA_0878 Persephonella marina EX-H1 cation efflux system YP_002730665.1 833088 D 123214 CDS YP_002730666.1 225850432 7675867 834191..837262 1 NC_012440.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914; cation efflux system protein CzcA 837262 7675867 PERMA_0879 Persephonella marina EX-H1 cation efflux system protein CzcA YP_002730666.1 834191 D 123214 CDS YP_002730667.1 225850433 7675312 837330..837818 1 NC_012440.1 hypothetical protein 837818 7675312 PERMA_0880 Persephonella marina EX-H1 hypothetical protein YP_002730667.1 837330 D 123214 CDS YP_002730668.1 225850434 7674217 837818..838291 1 NC_012440.1 identified by match to protein family HMM PF01988; integral membrane protein 838291 7674217 PERMA_0881 Persephonella marina EX-H1 integral membrane protein YP_002730668.1 837818 D 123214 CDS YP_002730669.1 225850435 7674768 838356..838592 1 NC_012440.1 identified by Glimmer3; hypothetical protein 838592 7674768 PERMA_0882 Persephonella marina EX-H1 hypothetical protein YP_002730669.1 838356 D 123214 CDS YP_002730670.1 225850436 7675062 838601..839641 1 NC_012440.1 hypothetical protein 839641 7675062 PERMA_0883 Persephonella marina EX-H1 hypothetical protein YP_002730670.1 838601 D 123214 CDS YP_002730671.1 225850437 7675774 839641..840996 1 NC_012440.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; diaminopimelate decarboxylase 840996 7675774 PERMA_0884 Persephonella marina EX-H1 diaminopimelate decarboxylase YP_002730671.1 839641 D 123214 CDS YP_002730672.1 225850438 7675850 841004..843088 1 NC_012440.1 identified by match to protein family HMM PF01551; match to protein family HMM PF03253; urea transporter 843088 7675850 PERMA_0885 Persephonella marina EX-H1 urea transporter YP_002730672.1 841004 D 123214 CDS YP_002730673.1 225850439 7674593 843098..843952 1 NC_012440.1 identified by Glimmer3; hypothetical protein 843952 7674593 PERMA_0886 Persephonella marina EX-H1 hypothetical protein YP_002730673.1 843098 D 123214 CDS YP_002730674.1 225850440 7674219 843962..844573 1 NC_012440.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 844573 7674219 PERMA_0887 Persephonella marina EX-H1 hypothetical protein YP_002730674.1 843962 D 123214 CDS YP_002730675.1 225850441 7674748 844570..844914 1 NC_012440.1 identified by match to protein family HMM PF06094; hypothetical protein 844914 7674748 PERMA_0889 Persephonella marina EX-H1 hypothetical protein YP_002730675.1 844570 D 123214 CDS YP_002730676.1 225850442 7675872 complement(844911..847382) 1 NC_012440.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; periplasmic nitrate reductase 847382 7675872 PERMA_0888 Persephonella marina EX-H1 periplasmic nitrate reductase YP_002730676.1 844911 R 123214 CDS YP_002730677.1 225850443 7675755 complement(847384..848703) 1 NC_012440.1 identified by match to protein family HMM PF07690; major facilitator family transporter 848703 7675755 PERMA_0890 Persephonella marina EX-H1 major facilitator family transporter YP_002730677.1 847384 R 123214 CDS YP_002730678.1 225850444 7675543 complement(848693..850609) 1 NC_012440.1 identified by match to protein family HMM PF01077; match to protein family HMM PF03460; ferredoxin--nitrite reductase 850609 7675543 PERMA_0891 Persephonella marina EX-H1 ferredoxin--nitrite reductase YP_002730678.1 848693 R 123214 CDS YP_002730679.1 225850445 7674712 850790..851482 1 NC_012440.1 identified by match to protein family HMM PF00117; glutamine amidotransferase class-I 851482 7674712 PERMA_0892 Persephonella marina EX-H1 glutamine amidotransferase class-I YP_002730679.1 850790 D 123214 CDS YP_002730680.1 225850446 7674348 851485..852039 1 NC_012440.1 identified by match to protein family HMM TIGR01470; siroheme synthase 852039 7674348 PERMA_0893 Persephonella marina EX-H1 siroheme synthase YP_002730680.1 851485 D 123214 CDS YP_002730681.1 225850447 7675047 complement(852040..852585) 1 NC_012440.1 identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481; hypothetical protein 852585 7675047 PERMA_0894 Persephonella marina EX-H1 hypothetical protein YP_002730681.1 852040 R 123214 CDS YP_002730682.1 225850448 7674872 complement(852589..853053) 1 NC_012440.1 identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481; hypothetical protein 853053 7674872 PERMA_0895 Persephonella marina EX-H1 hypothetical protein YP_002730682.1 852589 R 123214 CDS YP_002730683.1 225850449 7675853 complement(853110..853676) 1 NC_012440.1 identified by match to protein family HMM PF00596; L-fuculose phosphate aldolase 853676 7675853 PERMA_0896 Persephonella marina EX-H1 L-fuculose phosphate aldolase YP_002730683.1 853110 R 123214 CDS YP_002730684.1 225850450 7675890 853815..854318 1 NC_012440.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; thiol peroxidase (Scavengase P20) 854318 7675890 PERMA_0898 Persephonella marina EX-H1 thiol peroxidase (Scavengase P20) YP_002730684.1 853815 D 123214 CDS YP_002730685.1 225850451 7675511 complement(854282..855553) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 855553 7675511 PERMA_0897 Persephonella marina EX-H1 hypothetical protein YP_002730685.1 854282 R 123214 CDS YP_002730686.1 225850452 7674854 complement(855631..856272) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 856272 7674854 PERMA_0899 Persephonella marina EX-H1 hypothetical protein YP_002730686.1 855631 R 123214 CDS YP_002730687.1 225850453 7674184 856334..857155 1 NC_012440.1 identified by match to protein family HMM PF01739; chemotaxis protein methyltransferase 2 857155 7674184 PERMA_0900 Persephonella marina EX-H1 chemotaxis protein methyltransferase 2 YP_002730687.1 856334 D 123214 CDS YP_002730688.1 225850454 7675271 857148..858509 1 NC_012440.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR00508; adenosylmethionine-8-amino-7-oxononanoate transaminase 858509 bioA 7675271 bioA Persephonella marina EX-H1 adenosylmethionine-8-amino-7-oxononanoate transaminase YP_002730688.1 857148 D 123214 CDS YP_002730689.1 225850455 7676152 complement(858510..858947) 1 NC_012440.1 hypothetical protein 858947 7676152 PERMA_0902 Persephonella marina EX-H1 hypothetical protein YP_002730689.1 858510 R 123214 CDS YP_002730690.1 225850456 7675174 859130..863854 1 NC_012440.1 identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594; match to protein family HMM TIGR01443; match to protein family HMM TIGR01445; DNA polymerase III subunit alpha 863854 7675174 PERMA_0903 Persephonella marina EX-H1 DNA polymerase III subunit alpha YP_002730690.1 859130 D 123214 CDS YP_002730691.1 225850457 7675287 complement(863859..864416) 1 NC_012440.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 864416 folE 7675287 folE Persephonella marina EX-H1 GTP cyclohydrolase I YP_002730691.1 863859 R 123214 CDS YP_002730692.1 225850458 7675183 complement(864421..864843) 1 NC_012440.1 identified by match to protein family HMM PF02629; CoA-binding domain protein 864843 7675183 PERMA_0905 Persephonella marina EX-H1 CoA-binding domain protein YP_002730692.1 864421 R 123214 CDS YP_002730693.1 225850459 7675879 864937..865779 1 NC_012440.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 865779 lipA 7675879 lipA Persephonella marina EX-H1 lipoyl synthase YP_002730693.1 864937 D 123214 CDS YP_002730694.1 225850460 7674533 complement(865772..866134) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 866134 7674533 PERMA_0906 Persephonella marina EX-H1 hypothetical protein YP_002730694.1 865772 R 123214 CDS YP_002730695.1 225850461 7675896 866279..867490 1 NC_012440.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; dead/deah box helicase domain protein 867490 7675896 PERMA_0908 Persephonella marina EX-H1 dead/deah box helicase domain protein YP_002730695.1 866279 D 123214 CDS YP_002730696.1 225850462 7675404 complement(867511..868824) 1 NC_012440.1 identified by match to protein family HMM PF00308; match to protein family HMM PF08299; match to protein family HMM TIGR00362; chromosomal replication initiator protein DnaA 868824 dnaA 7675404 dnaA Persephonella marina EX-H1 chromosomal replication initiator protein DnaA YP_002730696.1 867511 R 123214 CDS YP_002730697.1 225850463 7675790 complement(869005..869292) 1 NC_012440.1 hypothetical protein 869292 7675790 PERMA_0910 Persephonella marina EX-H1 hypothetical protein YP_002730697.1 869005 R 123214 CDS YP_002730698.1 225850464 7675801 complement(869320..869976) 1 NC_012440.1 identified by match to protein family HMM PF00923; match to protein family HMM TIGR00875; transaldolase 869976 7675801 PERMA_0911 Persephonella marina EX-H1 transaldolase YP_002730698.1 869320 R 123214 CDS YP_002730699.1 225850465 7674265 complement(869977..871308) 1 NC_012440.1 identified by match to protein family HMM PF01551; peptidase, M23/M37 family 871308 7674265 PERMA_0912 Persephonella marina EX-H1 peptidase, M23/M37 family YP_002730699.1 869977 R 123214 CDS YP_002730700.1 225850466 7674428 complement(871320..872864) 1 NC_012440.1 identified by match to protein family HMM PF00682; match to protein family HMM PF08502; match to protein family HMM TIGR00973; 2-isopropylmalate synthase 872864 leuA 7674428 leuA Persephonella marina EX-H1 2-isopropylmalate synthase YP_002730700.1 871320 R 123214 CDS YP_002730701.1 225850467 7675520 complement(872966..874339) 1 NC_012440.1 identified by match to protein family HMM PF00374; hydrogenase large subunit 874339 7675520 PERMA_0914 Persephonella marina EX-H1 hydrogenase large subunit YP_002730701.1 872966 R 123214 CDS YP_002730702.1 225850468 7675950 complement(874340..875260) 1 NC_012440.1 identified by match to protein family HMM PF01058; hydrogenase-2, small subunit 875260 hybA 7675950 hybA Persephonella marina EX-H1 hydrogenase-2, small subunit YP_002730702.1 874340 R 123214 CDS YP_002730703.1 225850469 7674371 complement(875262..875861) 1 NC_012440.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 875861 7674371 PERMA_0916 Persephonella marina EX-H1 TetR family transcriptional regulator YP_002730703.1 875262 R 123214 CDS YP_002730704.1 225850470 7674351 complement(875907..876356) 1 NC_012440.1 identified by match to protein family HMM PF00903; glyoxalase family protein 876356 7674351 PERMA_0917 Persephonella marina EX-H1 glyoxalase family protein YP_002730704.1 875907 R 123214 CDS YP_002730705.1 225850471 7675824 complement(876311..877033) 1 NC_012440.1 identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073; hydrogenase accessory protein HypB 877033 hypB 7675824 hypB Persephonella marina EX-H1 hydrogenase accessory protein HypB YP_002730705.1 876311 R 123214 CDS YP_002730706.1 225850472 7674242 complement(877084..877500) 1 NC_012440.1 identified by match to protein family HMM PF01402; match to protein family HMM PF08753; repressor 877500 7674242 PERMA_0919 Persephonella marina EX-H1 repressor YP_002730706.1 877084 R 123214 CDS YP_002730707.1 225850473 7676104 complement(877509..878279) 1 NC_012440.1 identified by match to protein family HMM PF00005; cobalt import ATP-binding protein CbiO 1 878279 7676104 PERMA_0920 Persephonella marina EX-H1 cobalt import ATP-binding protein CbiO 1 YP_002730707.1 877509 R 123214 CDS YP_002730708.1 225850474 7676086 complement(878266..879504) 1 NC_012440.1 identified by match to protein family HMM PF02754; oxido/reductase iron sulfur protein 879504 7676086 PERMA_0921 Persephonella marina EX-H1 oxido/reductase iron sulfur protein YP_002730708.1 878266 R 123214 CDS YP_002730709.1 225850475 7674462 879795..879974 1 NC_012440.1 identified by Glimmer3; hypothetical protein 879974 7674462 PERMA_0922 Persephonella marina EX-H1 hypothetical protein YP_002730709.1 879795 D 123214 CDS YP_002730710.1 225850476 7675794 complement(879975..881306) 1 NC_012440.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; sigma-54 specific transcriptional regulator, Fis family 881306 7675794 PERMA_0923 Persephonella marina EX-H1 sigma-54 specific transcriptional regulator, Fis family YP_002730710.1 879975 R 123214 CDS YP_002730711.1 225850477 7675175 complement(881494..882177) 1 NC_012440.1 YheB 882177 7675175 PERMA_0924 Persephonella marina EX-H1 YheB YP_002730711.1 881494 R 123214 CDS YP_002730712.1 225850478 7675295 complement(882179..883987) 1 NC_012440.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA/BipA 883987 typA 7675295 typA Persephonella marina EX-H1 GTP-binding protein TypA/BipA YP_002730712.1 882179 R 123214 CDS YP_002730713.1 225850479 7674429 884102..884455 1 NC_012440.1 identified by Glimmer3; hypothetical protein 884455 7674429 PERMA_0926 Persephonella marina EX-H1 hypothetical protein YP_002730713.1 884102 D 123214 CDS YP_002730714.1 225850480 7674177 884433..886175 1 NC_012440.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 886175 uvrC 7674177 uvrC Persephonella marina EX-H1 excinuclease ABC subunit C YP_002730714.1 884433 D 123214 CDS YP_002730715.1 225850481 7675379 886231..887619 1 NC_012440.1 identified by match to protein family HMM PF08447; match to protein family HMM TIGR00229; PAS fold family protein 887619 7675379 PERMA_0928 Persephonella marina EX-H1 PAS fold family protein YP_002730715.1 886231 D 123214 CDS YP_002730716.1 225850482 7675048 887629..888384 1 NC_012440.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01458; match to protein family HMM TIGR01460; HAD-superfamily subfamily IIA hydrolase 888384 7675048 PERMA_0929 Persephonella marina EX-H1 HAD-superfamily subfamily IIA hydrolase YP_002730716.1 887629 D 123214 CDS YP_002730717.1 225850483 7674831 888388..888597 1 NC_012440.1 identified by Glimmer3; hypothetical protein 888597 7674831 PERMA_0931 Persephonella marina EX-H1 hypothetical protein YP_002730717.1 888388 D 123214 CDS YP_002730718.1 225850484 7676154 complement(888594..888941) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 888941 7676154 PERMA_0930 Persephonella marina EX-H1 hypothetical protein YP_002730718.1 888594 R 123214 CDS YP_002730719.1 225850485 7675160 889039..889881 1 NC_012440.1 identified by match to protein family HMM PF00896; match to protein family HMM TIGR01694; methylthioadenosine phosphorylase 889881 mtnP 7675160 mtnP Persephonella marina EX-H1 methylthioadenosine phosphorylase YP_002730719.1 889039 D 123214 CDS YP_002730720.1 225850486 7675893 complement(889878..890873) 1 NC_012440.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; signal transduction response regulator 890873 7675893 PERMA_0932 Persephonella marina EX-H1 signal transduction response regulator YP_002730720.1 889878 R 123214 CDS YP_002730721.1 225850487 7675171 complement(890951..892210) 1 NC_012440.1 identified by match to protein family HMM PF01136; collagenase 892210 prtC 7675171 prtC Persephonella marina EX-H1 collagenase YP_002730721.1 890951 R 123214 CDS YP_002730722.1 225850488 7675702 892326..893117 1 NC_012440.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 893117 trpC 7675702 trpC Persephonella marina EX-H1 indole-3-glycerol-phosphate synthase YP_002730722.1 892326 D 123214 CDS YP_002730723.1 225850489 7674183 complement(893110..893847) 1 NC_012440.1 identified by match to protein family HMM PF00149; Bis(5'-nucleosyl)-tetraphosphatase PrpE [asymmetrical] (Ap4A hydrolase) (Diadenosine 5',5'''-P1,P4-tetraphosphateasymmetrical hydrolase) (Diadenosine tetraphosphatase) 893847 7674183 PERMA_0935 Persephonella marina EX-H1 Bis(5'-nucleosyl)-tetraphosphatase PrpE [asymmetrical] (Ap4A hydrolase) (Diadenosine 5',5'''-P1,P4-tetraphosphateasymmetrical hydrolase) (Diadenosine tetraphosphatase) YP_002730723.1 893110 R 123214 CDS YP_002730724.1 225850490 7674259 complement(893832..896579) 1 NC_012440.1 identified by match to protein family HMM PF00801; PKD domain protein 896579 7674259 PERMA_0937 Persephonella marina EX-H1 PKD domain protein YP_002730724.1 893832 R 123214 CDS YP_002730725.1 225850491 7676044 896638..897501 1 NC_012440.1 identified by match to protein family HMM PF03193; match to protein family HMM TIGR00157; ribosome small subunit-dependent GTPase A 897501 rsgA 7676044 rsgA Persephonella marina EX-H1 ribosome small subunit-dependent GTPase A YP_002730725.1 896638 D 123214 CDS YP_002730726.1 225850492 7674564 complement(897490..898350) 1 NC_012440.1 identified by match to protein family HMM PF01297; periplasmic solute binding protein family 898350 7674564 PERMA_0938 Persephonella marina EX-H1 periplasmic solute binding protein family YP_002730726.1 897490 R 123214 CDS YP_002730727.1 225850493 7674598 complement(898347..899699) 1 NC_012440.1 identified by match to protein family HMM PF01729; match to protein family HMM PF04095; match to protein family HMM TIGR01513; nicotinate phosphoribosyltransferase 899699 pncB 7674598 pncB Persephonella marina EX-H1 nicotinate phosphoribosyltransferase YP_002730727.1 898347 R 123214 CDS YP_002730728.1 225850494 7676024 complement(899696..901075) 1 NC_012440.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01082; UDP-N-acetylmuramate--alanine ligase 901075 murC 7676024 murC Persephonella marina EX-H1 UDP-N-acetylmuramate--alanine ligase YP_002730728.1 899696 R 123214 CDS YP_002730729.1 225850495 7674500 901147..902052 1 NC_012440.1 BAX protein 902052 7674500 PERMA_0942 Persephonella marina EX-H1 BAX protein YP_002730729.1 901147 D 123214 CDS YP_002730730.1 225850496 7674258 902150..903019 1 NC_012440.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 903019 7674258 PERMA_0944 Persephonella marina EX-H1 polysaccharide deacetylase YP_002730730.1 902150 D 123214 CDS YP_002730731.1 225850497 7675571 complement(903012..903626) 1 NC_012440.1 identified by match to protein family HMM PF03458; membrane protein 903626 7675571 PERMA_0943 Persephonella marina EX-H1 membrane protein YP_002730731.1 903012 R 123214 CDS YP_002730732.1 225850498 7675698 complement(903629..904318) 1 NC_012440.1 identified by match to protein family HMM PF03749; match to protein family HMM TIGR00230; sugar fermentation stimulation protein 904318 sfsA 7675698 sfsA Persephonella marina EX-H1 sugar fermentation stimulation protein YP_002730732.1 903629 R 123214 CDS YP_002730733.1 225850499 7675459 complement(904323..905363) 1 NC_012440.1 identified by match to protein family HMM PF01208; match to protein family HMM TIGR01464; uroporphyrinogen decarboxylase 905363 hemE 7675459 hemE Persephonella marina EX-H1 uroporphyrinogen decarboxylase YP_002730733.1 904323 R 123214 CDS YP_002730734.1 225850500 7675861 905504..905827 1 NC_012440.1 identified by match to protein family HMM PF00034; cytochrome c552 905827 7675861 PERMA_0947 Persephonella marina EX-H1 cytochrome c552 YP_002730734.1 905504 D 123214 CDS YP_002730735.1 225850501 7674800 905858..906244 1 NC_012440.1 cytochrome c-551 (cytochrome c551) (cytochrome C8) 906244 7674800 PERMA_0949 Persephonella marina EX-H1 cytochrome c-551 (cytochrome c551) (cytochrome C8) YP_002730735.1 905858 D 123214 CDS YP_002730736.1 225850502 7675400 complement(906238..906474) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 906474 7675400 PERMA_0948 Persephonella marina EX-H1 hypothetical protein YP_002730736.1 906238 R 123214 CDS YP_002730737.1 225850503 7674539 906532..906954 1 NC_012440.1 identified by Glimmer3; hypothetical protein 906954 7674539 PERMA_0950 Persephonella marina EX-H1 hypothetical protein YP_002730737.1 906532 D 123214 CDS YP_002730738.1 225850504 7676027 complement(906958..908118) 1 NC_012440.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; periplasmic sensor signal transduction histidine kinase 908118 7676027 PERMA_0951 Persephonella marina EX-H1 periplasmic sensor signal transduction histidine kinase YP_002730738.1 906958 R 123214 CDS YP_002730739.1 225850505 7675816 complement(908115..908771) 1 NC_012440.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional activator protein IrlR 908771 7675816 PERMA_0952 Persephonella marina EX-H1 transcriptional activator protein IrlR YP_002730739.1 908115 R 123214 CDS YP_002730740.1 225850506 7674715 complement(908812..909090) 1 NC_012440.1 hypothetical protein 909090 7674715 PERMA_0953 Persephonella marina EX-H1 hypothetical protein YP_002730740.1 908812 R 123214 CDS YP_002730741.1 225850507 7675206 complement(909126..911723) 1 NC_012440.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01368; match to protein family HMM PF01743; match to protein family HMM PF02272; poly A polymerase 911723 7675206 PERMA_0954 Persephonella marina EX-H1 poly A polymerase YP_002730741.1 909126 R 123214 CDS YP_002730742.1 225850508 7674933 complement(911854..912246) 1 NC_012440.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; 4-hydroxybenzoyl-CoA thioesterase 912246 7674933 PERMA_0956 Persephonella marina EX-H1 4-hydroxybenzoyl-CoA thioesterase YP_002730742.1 911854 R 123214 CDS YP_002730743.1 225850509 7674441 complement(912249..912671) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 912671 7674441 PERMA_0957 Persephonella marina EX-H1 hypothetical protein YP_002730743.1 912249 R 123214 CDS YP_002730744.1 225850510 7675082 complement(912674..914053) 1 NC_012440.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphoglucomutase/phosphomannomutase 914053 7675082 PERMA_0958 Persephonella marina EX-H1 phosphoglucomutase/phosphomannomutase YP_002730744.1 912674 R 123214 CDS YP_002730745.1 225850511 7675771 914193..916067 1 NC_012440.1 identified by match to protein family HMM PF01406; match to protein family HMM PF01588; match to protein family HMM PF09334; match to protein family HMM TIGR00398; match to protein family HMM TIGR00399; methionyl-tRNA synthetase 916067 metG 7675771 metG Persephonella marina EX-H1 methionyl-tRNA synthetase YP_002730745.1 914193 D 123214 CDS YP_002730746.1 225850512 7675165 916077..916565 1 NC_012440.1 identified by match to protein family HMM PF01257; NADH-quinone oxidoreductase subunit e (nadhdehydrogenase i subunit e) (ndh-1 subunit e) 916565 7675165 PERMA_0960 Persephonella marina EX-H1 NADH-quinone oxidoreductase subunit e (nadhdehydrogenase i subunit e) (ndh-1 subunit e) YP_002730746.1 916077 D 123214 CDS YP_002730747.1 225850513 7674386 916565..917863 1 NC_012440.1 identified by match to protein family HMM PF01512; NADH-quinone oxidoreductase subunit f (nadhdehydrogenase i subunit f) (ndh-1 subunit f) 917863 7674386 PERMA_0961 Persephonella marina EX-H1 NADH-quinone oxidoreductase subunit f (nadhdehydrogenase i subunit f) (ndh-1 subunit f) YP_002730747.1 916565 D 123214 CDS YP_002730748.1 225850514 7675570 complement(917864..920047) 1 NC_012440.1 identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198; catalase/peroxidase HPI 920047 katG 7675570 katG Persephonella marina EX-H1 catalase/peroxidase HPI YP_002730748.1 917864 R 123214 CDS YP_002730749.1 225850515 7675388 complement(920124..921239) 1 NC_012440.1 identified by match to protein family HMM PF00155; aminotransferase 921239 7675388 PERMA_0963 Persephonella marina EX-H1 aminotransferase YP_002730749.1 920124 R 123214 CDS YP_002730750.1 225850516 7676049 complement(921243..922331) 1 NC_012440.1 identified by match to protein family HMM PF01266; match to protein family HMM TIGR02352; glycine oxidase ThiO 922331 thiO 7676049 thiO Persephonella marina EX-H1 glycine oxidase ThiO YP_002730750.1 921243 R 123214 CDS YP_002730751.1 225850517 7675764 complement(922340..923107) 1 NC_012440.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein 923107 7675764 PERMA_0965 Persephonella marina EX-H1 metallo-beta-lactamase family protein YP_002730751.1 922340 R 123214 CDS YP_002730752.1 225850518 7676151 complement(923101..923826) 1 NC_012440.1 identified by match to protein family HMM PF00106; oxidoreductase, short-chain dehydrogenase/reductase family 923826 7676151 PERMA_0966 Persephonella marina EX-H1 oxidoreductase, short-chain dehydrogenase/reductase family YP_002730752.1 923101 R 123214 CDS YP_002730753.1 225850519 7675193 923889..924893 1 NC_012440.1 identified by Glimmer3; hypothetical protein 924893 7675193 PERMA_0967 Persephonella marina EX-H1 hypothetical protein YP_002730753.1 923889 D 123214 CDS YP_002730754.1 225850520 7675266 924890..926065 1 NC_012440.1 identified by match to protein family HMM PF06347; match to protein family HMM PF08239; peptidoglycan-binding domain 1 protein 926065 7675266 PERMA_0968 Persephonella marina EX-H1 peptidoglycan-binding domain 1 protein YP_002730754.1 924890 D 123214 CDS YP_002730755.1 225850521 7674705 926129..927376 1 NC_012440.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 927376 7674705 PERMA_0969 Persephonella marina EX-H1 diguanylate cyclase YP_002730755.1 926129 D 123214 CDS YP_002730756.1 225850522 7674188 complement(927380..929467) 1 NC_012440.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; Ig family protein 929467 7674188 PERMA_0970 Persephonella marina EX-H1 Ig family protein YP_002730756.1 927380 R 123214 CDS YP_002730757.1 225850523 7676084 complement(929467..930477) 1 NC_012440.1 identified by match to protein family HMM PF07719; hypothetical protein 930477 7676084 PERMA_0971 Persephonella marina EX-H1 hypothetical protein YP_002730757.1 929467 R 123214 CDS YP_002730758.1 225850524 7674597 complement(930474..932048) 1 NC_012440.1 identified by match to protein family HMM PF00263; pilus 932048 7674597 PERMA_0972 Persephonella marina EX-H1 pilus YP_002730758.1 930474 R 123214 CDS YP_002730759.1 225850525 7675327 complement(932027..932491) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 932491 7675327 PERMA_0973 Persephonella marina EX-H1 hypothetical protein YP_002730759.1 932027 R 123214 CDS YP_002730760.1 225850526 7675024 complement(932493..932990) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 932990 7675024 PERMA_0974 Persephonella marina EX-H1 hypothetical protein YP_002730760.1 932493 R 123214 CDS YP_002730761.1 225850527 7676009 complement(932991..934322) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 934322 7676009 PERMA_0975 Persephonella marina EX-H1 hypothetical protein YP_002730761.1 932991 R 123214 CDS YP_002730762.1 225850528 7675576 934446..935030 1 NC_012440.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; prokaryotic N- methylation site 935030 7675576 PERMA_0976 Persephonella marina EX-H1 prokaryotic N- methylation site YP_002730762.1 934446 D 123214 CDS YP_002730763.1 225850529 7675770 935109..936785 1 NC_012440.1 identified by match to protein family HMM PF00437; match to protein family HMM PF05157; type IV pilus assembly protein TapB 936785 7675770 PERMA_0977 Persephonella marina EX-H1 type IV pilus assembly protein TapB YP_002730763.1 935109 D 123214 CDS YP_002730764.1 225850530 7675846 936787..938007 1 NC_012440.1 identified by match to protein family HMM PF00482; type II secretion system protein 938007 7675846 PERMA_0978 Persephonella marina EX-H1 type II secretion system protein YP_002730764.1 936787 D 123214 CDS YP_002730765.1 225850531 7674391 938007..938762 1 NC_012440.1 identified by match to protein family HMM PF01734; patatin 938762 7674391 PERMA_0980 Persephonella marina EX-H1 patatin YP_002730765.1 938007 D 123214 CDS YP_002730766.1 225850532 7675345 complement(938736..939647) 1 NC_012440.1 identified by match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; chaperone protein DnaJ 939647 7675345 PERMA_0979 Persephonella marina EX-H1 chaperone protein DnaJ YP_002730766.1 938736 R 123214 CDS YP_002730767.1 225850533 7675499 complement(939648..940214) 1 NC_012440.1 identified by match to protein family HMM PF01025; co-chaperone GrpE 940214 grpE 7675499 grpE Persephonella marina EX-H1 co-chaperone GrpE YP_002730767.1 939648 R 123214 CDS YP_002730768.1 225850534 7675592 complement(940279..940818) 1 NC_012440.1 identified by match to protein family HMM PF01936; RtsE 940818 7675592 PERMA_0982 Persephonella marina EX-H1 RtsE YP_002730768.1 940279 R 123214 CDS YP_002730769.1 225850535 7674522 940919..941119 1 NC_012440.1 hypothetical protein 941119 7674522 PERMA_0983 Persephonella marina EX-H1 hypothetical protein YP_002730769.1 940919 D 123214 CDS YP_002730770.1 225850536 7675003 941119..942270 1 NC_012440.1 identified by match to protein family HMM PF00149; metallophosphoesterase 942270 7675003 PERMA_0984 Persephonella marina EX-H1 metallophosphoesterase YP_002730770.1 941119 D 123214 CDS YP_002730771.1 225850537 7674793 942272..943279 1 NC_012440.1 identified by match to protein family HMM PF00248; aldo/keto reductase 943279 7674793 PERMA_0985 Persephonella marina EX-H1 aldo/keto reductase YP_002730771.1 942272 D 123214 CDS YP_002730772.1 225850538 7675585 943314..944405 1 NC_012440.1 identified by match to protein family HMM PF01590; match to protein family HMM PF01966; metal dependent phosphohydrolase 944405 7675585 PERMA_0986 Persephonella marina EX-H1 metal dependent phosphohydrolase YP_002730772.1 943314 D 123214 CDS YP_002730773.1 225850539 7675339 944395..945084 1 NC_012440.1 identified by Glimmer3; hypothetical protein 945084 7675339 PERMA_0987 Persephonella marina EX-H1 hypothetical protein YP_002730773.1 944395 D 123214 CDS YP_002730774.1 225850540 7676087 945087..947150 1 NC_012440.1 identified by match to protein family HMM PF00211; match to protein family HMM PF05226; adenylate cyclase 947150 7676087 PERMA_0988 Persephonella marina EX-H1 adenylate cyclase YP_002730774.1 945087 D 123214 CDS YP_002730775.1 225850541 7674459 947131..947895 1 NC_012440.1 identified by match to protein family HMM PF00753; metal dependent phosphohydrolase 947895 7674459 PERMA_0990 Persephonella marina EX-H1 metal dependent phosphohydrolase YP_002730775.1 947131 D 123214 CDS YP_002730776.1 225850542 7675430 complement(947883..950426) 1 NC_012440.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; signal transduction response regulator 950426 7675430 PERMA_0989 Persephonella marina EX-H1 signal transduction response regulator YP_002730776.1 947883 R 123214 CDS YP_002730777.1 225850543 7674542 950631..952403 1 NC_012440.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; multidrug ABC transporter, ATP-binding protein 952403 7674542 PERMA_0991 Persephonella marina EX-H1 multidrug ABC transporter, ATP-binding protein YP_002730777.1 950631 D 123214 CDS YP_002730778.1 225850544 7675433 952406..954496 1 NC_012440.1 identified by match to protein family HMM PF00580; ATP-dependent DNA helicase PcrA 954496 7675433 PERMA_0992 Persephonella marina EX-H1 ATP-dependent DNA helicase PcrA YP_002730778.1 952406 D 123214 CDS YP_002730779.1 225850545 7675358 complement(954507..955670) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 955670 7675358 PERMA_0993 Persephonella marina EX-H1 hypothetical protein YP_002730779.1 954507 R 123214 CDS YP_002730780.1 225850546 7675763 complement(955688..956788) 1 NC_012440.1 lipoprotein 956788 7675763 PERMA_0994 Persephonella marina EX-H1 lipoprotein YP_002730780.1 955688 R 123214 CDS YP_002730781.1 225850547 7675084 complement(956799..957578) 1 NC_012440.1 identified by match to protein family HMM PF01177; match to protein family HMM TIGR00067; glutamate racemase 957578 murI 7675084 murI Persephonella marina EX-H1 glutamate racemase YP_002730781.1 956799 R 123214 CDS YP_002730782.1 225850548 7674212 complement(957580..957864) 1 NC_012440.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; development gene iojAP superfamily protein 957864 7674212 PERMA_0996 Persephonella marina EX-H1 development gene iojAP superfamily protein YP_002730782.1 957580 R 123214 CDS YP_002730783.1 225850549 7676066 complement(957926..958828) 1 NC_012440.1 identified by match to protein family HMM PF07719; match to protein family HMM TIGR03302; similar to protein aq_1273; hypothetical protein 958828 7676066 PERMA_0997 Persephonella marina EX-H1 hypothetical protein YP_002730783.1 957926 R 123214 CDS YP_002730784.1 225850550 7675145 complement(958825..960228) 1 NC_012440.1 identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757; ribonuclease G 960228 7675145 PERMA_0998 Persephonella marina EX-H1 ribonuclease G YP_002730784.1 958825 R 123214 CDS YP_002730785.1 225850551 7676146 complement(960316..961194) 1 NC_012440.1 ferredoxin-type protein, NapH/MauN family 961194 7676146 PERMA_0999 Persephonella marina EX-H1 ferredoxin-type protein, NapH/MauN family YP_002730785.1 960316 R 123214 CDS YP_002730786.1 225850552 7674600 961297..962895 1 NC_012440.1 identified by match to protein family HMM PF00400; match to protein family HMM PF08308; PEGA domain family protein 962895 7674600 PERMA_1000 Persephonella marina EX-H1 PEGA domain family protein YP_002730786.1 961297 D 123214 CDS YP_002730787.1 225850553 7674223 962976..964355 1 NC_012440.1 identified by match to protein family HMM PF00156; match to protein family HMM PF00310; match to protein family HMM TIGR01134; amidophosphoribosyltransferase 964355 purF 7674223 purF Persephonella marina EX-H1 amidophosphoribosyltransferase YP_002730787.1 962976 D 123214 CDS YP_002730788.1 225850554 7674283 964363..965442 1 NC_012440.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321; Xaa-Pro dipeptidase (X-Pro dipeptidase) (Prolinedipeptidase) (Prolidase) (Imidodipeptidase) 965442 7674283 PERMA_1003 Persephonella marina EX-H1 Xaa-Pro dipeptidase (X-Pro dipeptidase) (Prolinedipeptidase) (Prolidase) (Imidodipeptidase) YP_002730788.1 964363 D 123214 CDS YP_002730789.1 225850555 7674972 complement(965428..965661) 1 NC_012440.1 hypothetical protein 965661 7674972 PERMA_1002 Persephonella marina EX-H1 hypothetical protein YP_002730789.1 965428 R 123214 CDS YP_002730790.1 225850556 7676172 965774..967768 1 NC_012440.1 identified by match to protein family HMM PF00563; eal/pas/ggdef domain protein 967768 7676172 PERMA_1004 Persephonella marina EX-H1 eal/pas/ggdef domain protein YP_002730790.1 965774 D 123214 CDS YP_002730791.1 225850557 7675205 967768..968856 1 NC_012440.1 identified by match to protein family HMM PF07238; type IV pilus assembly protein PilZ 968856 7675205 PERMA_1005 Persephonella marina EX-H1 type IV pilus assembly protein PilZ YP_002730791.1 967768 D 123214 CDS YP_002730792.1 225850558 7675541 968918..970204 1 NC_012440.1 identified by Glimmer3; hypothetical protein 970204 7675541 PERMA_1007 Persephonella marina EX-H1 hypothetical protein YP_002730792.1 968918 D 123214 CDS YP_002730793.1 225850559 7675682 complement(970201..970800) 1 NC_012440.1 identified by match to protein family HMM PF00881; match to protein family HMM TIGR03605; NAD 970800 7675682 PERMA_1006 Persephonella marina EX-H1 NAD YP_002730793.1 970201 R 123214 CDS YP_002730794.1 225850560 7674264 complement(970787..971482) 1 NC_012440.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR01934; ubiquinone/menaquinone biosynthesis methyltransferase UbiE 971482 7674264 PERMA_1008 Persephonella marina EX-H1 ubiquinone/menaquinone biosynthesis methyltransferase UbiE YP_002730794.1 970787 R 123214 CDS YP_002730795.1 225850561 7675882 971568..972398 1 NC_012440.1 polysaccharide biosynthesis protein 972398 7675882 PERMA_1009 Persephonella marina EX-H1 polysaccharide biosynthesis protein YP_002730795.1 971568 D 123214 CDS YP_002730796.1 225850562 7674483 972461..972706 1 NC_012440.1 identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase assembly chaperone HypC/HupF 972706 hypC 7674483 hypC Persephonella marina EX-H1 hydrogenase assembly chaperone HypC/HupF YP_002730796.1 972461 D 123214 CDS YP_002730797.1 225850563 7674839 972734..972943 1 NC_012440.1 identified by Glimmer3; hypothetical protein 972943 7674839 PERMA_1011 Persephonella marina EX-H1 hypothetical protein YP_002730797.1 972734 D 123214 CDS YP_002730798.1 225850564 7675281 972936..973382 1 NC_012440.1 identified by match to protein family HMM PF01850; PIN domain protein 973382 7675281 PERMA_1012 Persephonella marina EX-H1 PIN domain protein YP_002730798.1 972936 D 123214 CDS YP_002730799.1 225850565 7675356 973384..974496 1 NC_012440.1 identified by match to protein family HMM PF01924; match to protein family HMM TIGR00075; hydrogenase expression/formation protein HypD 974496 hypD 7675356 hypD Persephonella marina EX-H1 hydrogenase expression/formation protein HypD YP_002730799.1 973384 D 123214 CDS YP_002730800.1 225850566 7675614 974554..977070 1 NC_012440.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR01494; cation-transporting ATPase Pma1 977070 7675614 PERMA_1014 Persephonella marina EX-H1 cation-transporting ATPase Pma1 YP_002730800.1 974554 D 123214 CDS YP_002730801.1 225850567 7676165 977070..978062 1 NC_012440.1 identified by match to protein family HMM PF01699; sodium/calcium exchanger membrane region 978062 7676165 PERMA_1015 Persephonella marina EX-H1 sodium/calcium exchanger membrane region YP_002730801.1 977070 D 123214 CDS YP_002730802.1 225850568 7675389 978124..979122 1 NC_012440.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124; hydrogenase expression/formation protein HypE 979122 hypE 7675389 hypE Persephonella marina EX-H1 hydrogenase expression/formation protein HypE YP_002730802.1 978124 D 123214 CDS YP_002730803.1 225850569 7675116 979116..979706 1 NC_012440.1 identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072; Ni/Fe hydrogenase, expression/formation protein 979706 7675116 PERMA_1017 Persephonella marina EX-H1 Ni/Fe hydrogenase, expression/formation protein YP_002730803.1 979116 D 123214 CDS YP_002730804.1 225850570 7674234 979765..980472 1 NC_012440.1 identified by match to protein family HMM PF02591; zinc ribbon domain family 980472 7674234 PERMA_1019 Persephonella marina EX-H1 zinc ribbon domain family YP_002730804.1 979765 D 123214 CDS YP_002730805.1 225850571 7675177 complement(980469..981338) 1 NC_012440.1 identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652; diaminopimelate epimerase 981338 dapF 7675177 dapF Persephonella marina EX-H1 diaminopimelate epimerase YP_002730805.1 980469 R 123214 CDS YP_002730806.1 225850572 7674406 981661..982080 1 NC_012440.1 identified by match to protein family HMM PF01475; transcriptional regulator, Fur family 982080 7674406 PERMA_1021 Persephonella marina EX-H1 transcriptional regulator, Fur family YP_002730806.1 981661 D 123214 CDS YP_002730807.1 225850573 7675088 complement(982077..982688) 1 NC_012440.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00214; lipoyl(octanoyl) transferase 982688 lipB 7675088 lipB Persephonella marina EX-H1 lipoyl(octanoyl) transferase YP_002730807.1 982077 R 123214 CDS YP_002730808.1 225850574 7674293 982715..983137 1 NC_012440.1 Mov34/MPN/PAD-1 family protein 983137 7674293 PERMA_1023 Persephonella marina EX-H1 Mov34/MPN/PAD-1 family protein YP_002730808.1 982715 D 123214 CDS YP_002730809.1 225850575 7674727 complement(983121..983633) 1 NC_012440.1 hypothetical protein 983633 7674727 PERMA_1022 Persephonella marina EX-H1 hypothetical protein YP_002730809.1 983121 R 123214 CDS YP_002730810.1 225850576 7675557 complement(983694..983900) 1 NC_012440.1 identified by match to protein family HMM PF00313; hypothetical protein 983900 7675557 PERMA_1024 Persephonella marina EX-H1 hypothetical protein YP_002730810.1 983694 R 123214 CDS YP_002730811.1 225850577 7675734 984135..984860 1 NC_012440.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal large subunit pseudouridine synthase B 984860 rluB 7675734 rluB Persephonella marina EX-H1 ribosomal large subunit pseudouridine synthase B YP_002730811.1 984135 D 123214 CDS YP_002730812.1 225850578 7674580 984907..985212 1 NC_012440.1 identified by Glimmer3; hypothetical protein 985212 7674580 PERMA_1026 Persephonella marina EX-H1 hypothetical protein YP_002730812.1 984907 D 123214 CDS YP_002730813.1 225850579 7674779 complement(985437..986471) 1 NC_012440.1 hypothetical protein 986471 7674779 PERMA_1027 Persephonella marina EX-H1 hypothetical protein YP_002730813.1 985437 R 123214 CDS YP_002730814.1 225850580 7674586 complement(986531..987274) 1 NC_012440.1 identified by match to protein family HMM PF03412; peptidase C39 bacteriocin processing 987274 7674586 PERMA_1028 Persephonella marina EX-H1 peptidase C39 bacteriocin processing YP_002730814.1 986531 R 123214 CDS YP_002730815.1 225850581 7675366 complement(987277..987687) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 987687 7675366 PERMA_1029 Persephonella marina EX-H1 hypothetical protein YP_002730815.1 987277 R 123214 CDS YP_002730816.1 225850582 7674200 complement(987690..988034) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 988034 7674200 PERMA_1030 Persephonella marina EX-H1 hypothetical protein YP_002730816.1 987690 R 123214 CDS YP_002730817.1 225850583 7676081 complement(988094..991369) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 991369 7676081 PERMA_1031 Persephonella marina EX-H1 hypothetical protein YP_002730817.1 988094 R 123214 CDS YP_002730818.1 225850584 7674851 991471..991632 1 NC_012440.1 identified by Glimmer3; hypothetical protein 991632 7674851 PERMA_1032 Persephonella marina EX-H1 hypothetical protein YP_002730818.1 991471 D 123214 CDS YP_002730819.1 225850585 7674323 complement(991665..992075) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 992075 7674323 PERMA_1033 Persephonella marina EX-H1 hypothetical protein YP_002730819.1 991665 R 123214 CDS YP_002730820.1 225850586 7675184 complement(992133..995384) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 995384 7675184 PERMA_1034 Persephonella marina EX-H1 hypothetical protein YP_002730820.1 992133 R 123214 CDS YP_002730821.1 225850587 7675958 complement(995652..996062) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 996062 7675958 PERMA_1035 Persephonella marina EX-H1 hypothetical protein YP_002730821.1 995652 R 123214 CDS YP_002730822.1 225850588 7675650 complement(996065..996202) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 996202 7675650 PERMA_1036 Persephonella marina EX-H1 hypothetical protein YP_002730822.1 996065 R 123214 CDS YP_002730823.1 225850589 7674767 complement(996293..999565) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 999565 7674767 PERMA_1037 Persephonella marina EX-H1 hypothetical protein YP_002730823.1 996293 R 123214 CDS YP_002730824.1 225850590 7675028 complement(999768..1000829) 1 NC_012440.1 identified by match to protein family HMM PF00528; oligopeptide transport system permease protein AppC 1000829 7675028 PERMA_1038 Persephonella marina EX-H1 oligopeptide transport system permease protein AppC YP_002730824.1 999768 R 123214 CDS YP_002730825.1 225850591 7675752 complement(1000831..1001817) 1 NC_012440.1 identified by match to protein family HMM PF00528; oligopeptide transport system permease protein AppB 1001817 7675752 PERMA_1039 Persephonella marina EX-H1 oligopeptide transport system permease protein AppB YP_002730825.1 1000831 R 123214 CDS YP_002730826.1 225850592 7675708 1001912..1002688 1 NC_012440.1 citrate synthase 1002688 7675708 PERMA_1040 Persephonella marina EX-H1 citrate synthase YP_002730826.1 1001912 D 123214 CDS YP_002730827.1 225850593 7674587 1002698..1004713 1 NC_012440.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; nitrogen regulation protein NtrY 1004713 7674587 PERMA_1042 Persephonella marina EX-H1 nitrogen regulation protein NtrY YP_002730827.1 1002698 D 123214 CDS YP_002730828.1 225850594 7675221 complement(1004706..1005773) 1 NC_012440.1 identified by match to protein family HMM PF00953; match to protein family HMM TIGR00445; phospho-N-acetylmuramoyl-pentapeptide- transferase 1005773 mraY 7675221 mraY Persephonella marina EX-H1 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_002730828.1 1004706 R 123214 CDS YP_002730829.1 225850595 7675092 complement(1005774..1006358) 1 NC_012440.1 tRNA (guanine-N(1)-)-methyltransferase (M1G-methyltransferase) (tRNA [GM37] methyltransferase) 1006358 7675092 PERMA_1043 Persephonella marina EX-H1 tRNA (guanine-N(1)-)-methyltransferase (M1G-methyltransferase) (tRNA [GM37] methyltransferase) YP_002730829.1 1005774 R 123214 CDS YP_002730830.1 225850596 7674807 complement(1006367..1006936) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1006936 7674807 PERMA_1044 Persephonella marina EX-H1 hypothetical protein YP_002730830.1 1006367 R 123214 CDS YP_002730831.1 225850597 7674529 complement(1006933..1007244) 1 NC_012440.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase SecG subunit 1007244 7674529 PERMA_1045 Persephonella marina EX-H1 preprotein translocase SecG subunit YP_002730831.1 1006933 R 123214 CDS YP_002730832.1 225850598 7674305 complement(1007278..1008048) 1 NC_012440.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1008048 tpiA 7674305 tpiA Persephonella marina EX-H1 triosephosphate isomerase YP_002730832.1 1007278 R 123214 CDS YP_002730833.1 225850599 7674956 complement(1008058..1008672) 1 NC_012440.1 identified by match to protein family HMM PF00300; match to protein family HMM TIGR01258; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (phosphoglyceromutase) (pgam) (bpg-dependent pgam) (dpgm) 1008672 7674956 PERMA_1047 Persephonella marina EX-H1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (phosphoglyceromutase) (pgam) (bpg-dependent pgam) (dpgm) YP_002730833.1 1008058 R 123214 CDS YP_002730834.1 225850600 7676110 complement(1008714..1009001) 1 NC_012440.1 conserved membrane protein YdzA 1009001 7676110 PERMA_1048 Persephonella marina EX-H1 conserved membrane protein YdzA YP_002730834.1 1008714 R 123214 CDS YP_002730835.1 225850601 7674899 complement(1009013..1009753) 1 NC_012440.1 identified by match to protein family HMM PF05175; methyltransferase small 1009753 7674899 PERMA_1049 Persephonella marina EX-H1 methyltransferase small YP_002730835.1 1009013 R 123214 CDS YP_002730836.1 225850602 7675249 complement(1009755..1010165) 1 NC_012440.1 identified by match to protein family HMM PF02823; match to protein family HMM TIGR01216; ATP synthase F1 subunit epsilon 1010165 atpC_1 7675249 atpC_1 Persephonella marina EX-H1 ATP synthase F1 subunit epsilon YP_002730836.1 1009755 R 123214 CDS YP_002730837.1 225850603 7674331 1010247..1010903 1 NC_012440.1 identified by match to protein family HMM PF01965; isoprenoid biosynthesis protein with amidotransferase-like domain 1010903 7674331 PERMA_1051 Persephonella marina EX-H1 isoprenoid biosynthesis protein with amidotransferase-like domain YP_002730837.1 1010247 D 123214 CDS YP_002730838.1 225850604 7675241 1010890..1011012 1 NC_012440.1 lipoprotein 1011012 7675241 PERMA_1052 Persephonella marina EX-H1 lipoprotein YP_002730838.1 1010890 D 123214 CDS YP_002730839.1 225850605 7675527 1011023..1011496 1 NC_012440.1 deoxycytidine triphosphate deaminase 1011496 7675527 PERMA_1053 Persephonella marina EX-H1 deoxycytidine triphosphate deaminase YP_002730839.1 1011023 D 123214 CDS YP_002730840.1 225850606 7674860 1011560..1012885 1 NC_012440.1 identified by match to protein family HMM PF00742; match to protein family HMM PF01842; match to protein family HMM PF03447; homoserine dehydrogenase (HDH) 1012885 7674860 PERMA_1054 Persephonella marina EX-H1 homoserine dehydrogenase (HDH) YP_002730840.1 1011560 D 123214 CDS YP_002730841.1 225850607 7676057 1012889..1014337 1 NC_012440.1 identified by match to protein family HMM PF00939; match to protein family HMM PF03600; match to protein family HMM TIGR00785; anion transporter 1014337 7676057 PERMA_1055 Persephonella marina EX-H1 anion transporter YP_002730841.1 1012889 D 123214 CDS YP_002730842.1 225850608 7675031 1014347..1014781 1 NC_012440.1 identified by match to protein family HMM PF00293; MutT/nudix family protein 1014781 7675031 PERMA_1056 Persephonella marina EX-H1 MutT/nudix family protein YP_002730842.1 1014347 D 123214 CDS YP_002730843.1 225850609 7675209 1014774..1015652 1 NC_012440.1 identified by match to protein family HMM PF03279; lipid A biosynthesis acyltransferase 1015652 7675209 PERMA_1057 Persephonella marina EX-H1 lipid A biosynthesis acyltransferase YP_002730843.1 1014774 D 123214 CDS YP_002730844.1 225850610 7674806 1015736..1017022 1 NC_012440.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 1017022 hemL 7674806 hemL Persephonella marina EX-H1 glutamate-1-semialdehyde aminotransferase YP_002730844.1 1015736 D 123214 CDS YP_002730845.1 225850611 7675813 1017034..1017435 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1017435 7675813 PERMA_1059 Persephonella marina EX-H1 hypothetical protein YP_002730845.1 1017034 D 123214 CDS YP_002730846.1 225850612 7674726 1017435..1017893 1 NC_012440.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR 1017893 nrdR 7674726 nrdR Persephonella marina EX-H1 transcriptional regulator NrdR YP_002730846.1 1017435 D 123214 CDS YP_002730847.1 225850613 7675030 complement(1017908..1019098) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1019098 7675030 PERMA_1061 Persephonella marina EX-H1 hypothetical protein YP_002730847.1 1017908 R 123214 CDS YP_002730848.1 225850614 7674714 1019243..1019692 1 NC_012440.1 identified by match to protein family HMM PF09123; hypothetical protein 1019692 7674714 PERMA_1062 Persephonella marina EX-H1 hypothetical protein YP_002730848.1 1019243 D 123214 CDS YP_002730849.1 225850615 7674503 complement(1019694..1019942) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1019942 7674503 PERMA_1063 Persephonella marina EX-H1 hypothetical protein YP_002730849.1 1019694 R 123214 CDS YP_002730850.1 225850616 7674796 1020084..1021154 1 NC_012440.1 chromosome partitioning ATPase 1021154 7674796 PERMA_1064 Persephonella marina EX-H1 chromosome partitioning ATPase YP_002730850.1 1020084 D 123214 CDS YP_002730851.1 225850617 7675500 1021172..1022407 1 NC_012440.1 identified by match to protein family HMM PF00266; cysteine desulfurase IscS 1022407 iscS 7675500 iscS Persephonella marina EX-H1 cysteine desulfurase IscS YP_002730851.1 1021172 D 123214 CDS YP_002730852.1 225850618 7675188 complement(1022428..1022607) 1 NC_012440.1 hypothetical protein 1022607 7675188 PERMA_1066 Persephonella marina EX-H1 hypothetical protein YP_002730852.1 1022428 R 123214 CDS YP_002730853.1 225850619 7674398 1022737..1023195 1 NC_012440.1 identified by match to protein family HMM PF01592; nitrogen-fixing NifU domain protein 1023195 7674398 PERMA_1067 Persephonella marina EX-H1 nitrogen-fixing NifU domain protein YP_002730853.1 1022737 D 123214 CDS YP_002730854.1 225850620 7675039 1023185..1024243 1 NC_012440.1 identified by match to protein family HMM PF02568; thiamine biosynthesis protein 1024243 7675039 PERMA_1068 Persephonella marina EX-H1 thiamine biosynthesis protein YP_002730854.1 1023185 D 123214 CDS YP_002730855.1 225850621 7676142 1024243..1024494 1 NC_012440.1 identified by match to protein family HMM PF01206; protein C/C/C/C 1024494 7676142 PERMA_1069 Persephonella marina EX-H1 protein C/C/C/C YP_002730855.1 1024243 D 123214 CDS YP_002730856.1 225850622 7674517 1024494..1024748 1 NC_012440.1 hypothetical protein 1024748 7674517 PERMA_1070 Persephonella marina EX-H1 hypothetical protein YP_002730856.1 1024494 D 123214 CDS YP_002730857.1 225850623 7674295 1024760..1025029 1 NC_012440.1 identified by match to protein family HMM PF01106; hypothetical protein 1025029 7674295 PERMA_1071 Persephonella marina EX-H1 hypothetical protein YP_002730857.1 1024760 D 123214 CDS YP_002730858.1 225850624 7675720 1025031..1025876 1 NC_012440.1 identified by match to protein family HMM PF01488; match to protein family HMM PF08501; match to protein family HMM TIGR00507; shikimate 5-dehydrogenase 1025876 aroE 7675720 aroE Persephonella marina EX-H1 shikimate 5-dehydrogenase YP_002730858.1 1025031 D 123214 CDS YP_002730859.1 225850625 7674887 complement(1025997..1026428) 1 NC_012440.1 identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149; hypothetical protein 1026428 7674887 PERMA_1073 Persephonella marina EX-H1 hypothetical protein YP_002730859.1 1025997 R 123214 CDS YP_002730860.1 225850626 7674713 complement(1026421..1027116) 1 NC_012440.1 identified by match to protein family HMM PF04493; endonuclease V (Deoxyinosine 3'endonuclease)(Deoxyribonuclease V) (DNase V) 1027116 7674713 PERMA_1074 Persephonella marina EX-H1 endonuclease V (Deoxyinosine 3'endonuclease)(Deoxyribonuclease V) (DNase V) YP_002730860.1 1026421 R 123214 CDS YP_002730861.1 225850627 7675673 complement(1027113..1028219) 1 NC_012440.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 1028219 proB 7675673 proB Persephonella marina EX-H1 gamma-glutamyl kinase YP_002730861.1 1027113 R 123214 CDS YP_002730862.1 225850628 7674802 complement(1028221..1028979) 1 NC_012440.1 identified by match to protein family HMM PF08704; tRNA methyltransferase complex GCD14 subunit 1028979 7674802 PERMA_1076 Persephonella marina EX-H1 tRNA methyltransferase complex GCD14 subunit YP_002730862.1 1028221 R 123214 CDS YP_002730863.1 225850629 7675934 complement(1028976..1029623) 1 NC_012440.1 hypothetical protein 1029623 7675934 PERMA_1077 Persephonella marina EX-H1 hypothetical protein YP_002730863.1 1028976 R 123214 CDS YP_002730864.1 225850630 7675372 complement(1029634..1030506) 1 NC_012440.1 identified by match to protein family HMM PF03446; 3-hydroxyisobutyrate dehydrogenase 1030506 7675372 PERMA_1078 Persephonella marina EX-H1 3-hydroxyisobutyrate dehydrogenase YP_002730864.1 1029634 R 123214 CDS YP_002730865.1 225850631 7675256 complement(1030516..1032090) 1 NC_012440.1 identified by match to protein family HMM PF00682; match to protein family HMM PF08502; match to protein family HMM TIGR00977; alpha-isopropylmalate/homocitrate synthase family transferase 1032090 7675256 PERMA_1079 Persephonella marina EX-H1 alpha-isopropylmalate/homocitrate synthase family transferase YP_002730865.1 1030516 R 123214 CDS YP_002730866.1 225850632 7674834 1032195..1032953 1 NC_012440.1 identified by match to protein family HMM PF00561; hydrolase, alpha/beta fold family 1032953 7674834 PERMA_1081 Persephonella marina EX-H1 hydrolase, alpha/beta fold family YP_002730866.1 1032195 D 123214 CDS YP_002730867.1 225850633 7675432 complement(1032948..1033901) 1 NC_012440.1 identified by match to protein family HMM PF02769; match to protein family HMM TIGR01379; thiamine-monophosphate kinase 1033901 thiL 7675432 thiL Persephonella marina EX-H1 thiamine-monophosphate kinase YP_002730867.1 1032948 R 123214 CDS YP_002730868.1 225850634 7674549 1033975..1034547 1 NC_012440.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1034547 efp 7674549 efp Persephonella marina EX-H1 elongation factor P YP_002730868.1 1033975 D 123214 CDS YP_002730869.1 225850635 7675481 1034559..1035017 1 NC_012440.1 identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase, biotin carboxyl carrier protein 1035017 accB 7675481 accB Persephonella marina EX-H1 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_002730869.1 1034559 D 123214 CDS YP_002730870.1 225850636 7674674 1035030..1035971 1 NC_012440.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR02197; ADP-glyceromanno-heptose 6-epimerase 1035971 rfaD 7674674 rfaD Persephonella marina EX-H1 ADP-glyceromanno-heptose 6-epimerase YP_002730870.1 1035030 D 123214 CDS YP_002730871.1 225850637 7674466 1035972..1036874 1 NC_012440.1 identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR00191; homoserine kinase 1036874 thrB 7674466 thrB Persephonella marina EX-H1 homoserine kinase YP_002730871.1 1035972 D 123214 CDS YP_002730872.1 225850638 7676191 1036974..1037507 1 NC_012440.1 identified by match to protein family HMM PF00258; flavodoxin 1037507 7676191 PERMA_1087 Persephonella marina EX-H1 flavodoxin YP_002730872.1 1036974 D 123214 CDS YP_002730873.1 225850639 7675719 complement(1037502..1040345) 1 NC_012440.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; transcription-repair-coupling factor (trcf) (ATP-dependent helicase mfd) 1040345 7675719 PERMA_1086 Persephonella marina EX-H1 transcription-repair-coupling factor (trcf) (ATP-dependent helicase mfd) YP_002730873.1 1037502 R 123214 CDS YP_002730874.1 225850640 7675523 complement(1040350..1040850) 1 NC_012440.1 hypothetical protein 1040850 7675523 PERMA_1088 Persephonella marina EX-H1 hypothetical protein YP_002730874.1 1040350 R 123214 CDS YP_002730875.1 225850641 7675779 complement(1040852..1042414) 1 NC_012440.1 identified by match to protein family HMM PF01464; match to protein family HMM PF01476; membrane-bound lytic murein transglycosylase D 1042414 mltD 7675779 mltD Persephonella marina EX-H1 membrane-bound lytic murein transglycosylase D YP_002730875.1 1040852 R 123214 CDS YP_002730876.1 225850642 7675103 1042449..1043390 1 NC_012440.1 identified by match to protein family HMM PF04055; MoaA/NifB/PqqE family protein 1043390 7675103 PERMA_1091 Persephonella marina EX-H1 MoaA/NifB/PqqE family protein YP_002730876.1 1042449 D 123214 CDS YP_002730877.1 225850643 7675762 complement(1043387..1044190) 1 NC_012440.1 identified by match to protein family HMM PF01881; match to protein family HMM TIGR01877; CRISPR-associated protein Cas6 1044190 cas_1 7675762 cas_1 Persephonella marina EX-H1 CRISPR-associated protein Cas6 YP_002730877.1 1043387 R 123214 CDS YP_002730878.1 225850644 7675691 1044476..1045654 1 NC_012440.1 identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 1045654 coaBC 7675691 coaBC Persephonella marina EX-H1 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_002730878.1 1044476 D 123214 CDS YP_002730879.1 225850645 7676199 1045676..1046173 1 NC_012440.1 identified by match to protein family HMM PF02080; TrkA domain protein 1046173 7676199 PERMA_1093 Persephonella marina EX-H1 TrkA domain protein YP_002730879.1 1045676 D 123214 CDS YP_002730880.1 225850646 7675248 1046163..1047353 1 NC_012440.1 identified by match to protein family HMM PF00999; sodium/hydrogen exchanger 1047353 7675248 PERMA_1094 Persephonella marina EX-H1 sodium/hydrogen exchanger YP_002730880.1 1046163 D 123214 CDS YP_002730881.1 225850647 7675391 1047355..1048284 1 NC_012440.1 lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase 1048284 7675391 PERMA_1095 Persephonella marina EX-H1 lysyl-tRNA synthetase YP_002730881.1 1047355 D 123214 CDS YP_002730882.1 225850648 7675590 1048294..1049847 1 NC_012440.1 identified by match to protein family HMM PF00520; match to protein family HMM PF02254; match to protein family HMM PF07885; potassium channel protein 1049847 7675590 PERMA_1096 Persephonella marina EX-H1 potassium channel protein YP_002730882.1 1048294 D 123214 CDS YP_002730883.1 225850649 7674838 1049844..1050545 1 NC_012440.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 1050545 hemD 7674838 hemD Persephonella marina EX-H1 uroporphyrinogen-III synthase YP_002730883.1 1049844 D 123214 CDS YP_002730884.1 225850650 7675269 complement(1050537..1051430) 1 NC_012440.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 1051430 lpxC 7675269 lpxC Persephonella marina EX-H1 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_002730884.1 1050537 R 123214 CDS YP_002730885.1 225850651 7675260 1051585..1052817 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1052817 7675260 PERMA_1099 Persephonella marina EX-H1 hypothetical protein YP_002730885.1 1051585 D 123214 CDS YP_002730886.1 225850652 7674906 1052818..1053696 1 NC_012440.1 identified by match to protein family HMM PF01934; hypothetical protein 1053696 7674906 PERMA_1101 Persephonella marina EX-H1 hypothetical protein YP_002730886.1 1052818 D 123214 CDS YP_002730887.1 225850653 7674494 complement(1053670..1054488) 1 NC_012440.1 identified by match to protein family HMM PF00005; glutathione import ATP-binding protein GsiA 1054488 7674494 PERMA_1100 Persephonella marina EX-H1 glutathione import ATP-binding protein GsiA YP_002730887.1 1053670 R 123214 CDS YP_002730888.1 225850654 7675967 complement(1054509..1055405) 1 NC_012440.1 protein disulfide isomerase 1055405 7675967 PERMA_1102 Persephonella marina EX-H1 protein disulfide isomerase YP_002730888.1 1054509 R 123214 CDS YP_002730889.1 225850655 7675440 1055497..1055943 1 NC_012440.1 identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120; ribose 5-phosphate isomerase B 1055943 rpiB 7675440 rpiB Persephonella marina EX-H1 ribose 5-phosphate isomerase B YP_002730889.1 1055497 D 123214 CDS YP_002730890.1 225850656 7674236 1055957..1057219 1 NC_012440.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1057219 glyA 7674236 glyA Persephonella marina EX-H1 serine hydroxymethyltransferase YP_002730890.1 1055957 D 123214 CDS YP_002730891.1 225850657 7676072 1057244..1058086 1 NC_012440.1 identified by match to protein family HMM PF01513; inorganic polyphosphate/ATP-NAD kinase 1058086 7676072 PERMA_1105 Persephonella marina EX-H1 inorganic polyphosphate/ATP-NAD kinase YP_002730891.1 1057244 D 123214 CDS YP_002730892.1 225850658 7675121 1058088..1058594 1 NC_012440.1 identified by match to protein family HMM PF02542; match to protein family HMM TIGR00151; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1058594 ispF 7675121 ispF Persephonella marina EX-H1 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_002730892.1 1058088 D 123214 CDS YP_002730893.1 225850659 7675341 1058575..1058787 1 NC_012440.1 hypothetical protein 1058787 7675341 PERMA_1107 Persephonella marina EX-H1 hypothetical protein YP_002730893.1 1058575 D 123214 CDS YP_002730894.1 225850660 7675623 1058774..1061182 1 NC_012440.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 1061182 recG 7675623 recG Persephonella marina EX-H1 ATP-dependent DNA helicase RecG YP_002730894.1 1058774 D 123214 CDS YP_002730895.1 225850661 7675395 complement(1061179..1061817) 1 NC_012440.1 identified by match to protein family HMM PF02535; GufA protein 1061817 7675395 PERMA_1108 Persephonella marina EX-H1 GufA protein YP_002730895.1 1061179 R 123214 CDS YP_002730896.1 225850662 7676013 complement(1062003..1063877) 1 NC_012440.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; eal/ggdef/pas domain protein 1063877 7676013 PERMA_1110 Persephonella marina EX-H1 eal/ggdef/pas domain protein YP_002730896.1 1062003 R 123214 CDS YP_002730897.1 225850663 7675996 1064006..1066360 1 NC_012440.1 identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; FOG: EAL domain protein 1066360 7675996 PERMA_1112 Persephonella marina EX-H1 FOG: EAL domain protein YP_002730897.1 1064006 D 123214 CDS YP_002730898.1 225850664 7675990 complement(1066352..1068226) 1 NC_012440.1 identified by match to protein family HMM PF01841; transglutaminase domain protein 1068226 7675990 PERMA_1111 Persephonella marina EX-H1 transglutaminase domain protein YP_002730898.1 1066352 R 123214 CDS YP_002730899.1 225850665 7675137 complement(1068213..1068989) 1 NC_012440.1 identified by match to protein family HMM PF01882; hypothetical protein 1068989 7675137 PERMA_1113 Persephonella marina EX-H1 hypothetical protein YP_002730899.1 1068213 R 123214 CDS YP_002730900.1 225850666 7674846 complement(1069079..1070008) 1 NC_012440.1 identified by match to protein family HMM PF07726; match to protein family HMM PF07728; ATPase AAA 1070008 7674846 PERMA_1114 Persephonella marina EX-H1 ATPase AAA YP_002730900.1 1069079 R 123214 CDS YP_002730901.1 225850667 7674883 complement(1070017..1070886) 1 NC_012440.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 1070886 panC 7674883 panC Persephonella marina EX-H1 pantoate--beta-alanine ligase YP_002730901.1 1070017 R 123214 CDS YP_002730902.1 225850668 7675335 1070939..1071169 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1071169 7675335 PERMA_1116 Persephonella marina EX-H1 hypothetical protein YP_002730902.1 1070939 D 123214 CDS YP_002730903.1 225850669 7675098 1071169..1071387 1 NC_012440.1 hypothetical protein 1071387 7675098 PERMA_1117 Persephonella marina EX-H1 hypothetical protein YP_002730903.1 1071169 D 123214 CDS YP_002730904.1 225850670 7674290 1071391..1073361 1 NC_012440.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; ggdef family protein 1073361 7674290 PERMA_1119 Persephonella marina EX-H1 ggdef family protein YP_002730904.1 1071391 D 123214 CDS YP_002730905.1 225850671 7674395 complement(1073345..1074448) 1 NC_012440.1 identified by match to protein family HMM PF00155; match to protein family HMM TIGR01141; histidinol-phosphate transaminase 1074448 hisC_1 7674395 hisC_1 Persephonella marina EX-H1 histidinol-phosphate transaminase YP_002730905.1 1073345 R 123214 CDS YP_002730906.1 225850672 7674235 complement(1074445..1075686) 1 NC_012440.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdenum cofactor biosynthesis protein A 1075686 7674235 PERMA_1120 Persephonella marina EX-H1 molybdenum cofactor biosynthesis protein A YP_002730906.1 1074445 R 123214 CDS YP_002730907.1 225850673 7675598 complement(1075691..1077283) 1 NC_012440.1 identified by match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02222; match to protein family HMM PF02655; match to protein family HMM PF02786; match to protein family HMM PF08443; carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate synthetase ammonia chain) 1077283 7675598 PERMA_1121 Persephonella marina EX-H1 carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate synthetase ammonia chain) YP_002730907.1 1075691 R 123214 CDS YP_002730908.1 225850674 7676143 1077367..1078014 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1078014 7676143 PERMA_1122 Persephonella marina EX-H1 hypothetical protein YP_002730908.1 1077367 D 123214 CDS YP_002730909.1 225850675 7675385 complement(1078015..1078575) 1 NC_012440.1 identified by match to protein family HMM PF02581; thiamine-phosphate pyrophosphorylase (TMPpyrophosphorylase) (TMP-PPase) (Thiamine-phosphate synthase) 1078575 7675385 PERMA_1123 Persephonella marina EX-H1 thiamine-phosphate pyrophosphorylase (TMPpyrophosphorylase) (TMP-PPase) (Thiamine-phosphate synthase) YP_002730909.1 1078015 R 123214 CDS YP_002730910.1 225850676 7675817 1078735..1078932 1 NC_012440.1 identified by match to protein family HMM PF03966; tetraacyldisaccharide 4'-kinase 1078932 7675817 PERMA_1124 Persephonella marina EX-H1 tetraacyldisaccharide 4'-kinase YP_002730910.1 1078735 D 123214 CDS YP_002730911.1 225850677 7674308 1078929..1080674 1 NC_012440.1 identified by match to protein family HMM PF00496; transporter 1080674 7674308 PERMA_1125 Persephonella marina EX-H1 transporter YP_002730911.1 1078929 D 123214 CDS YP_002730912.1 225850678 7675444 complement(1080675..1081967) 1 NC_012440.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; signal transduction response regulator 1081967 7675444 PERMA_1126 Persephonella marina EX-H1 signal transduction response regulator YP_002730912.1 1080675 R 123214 CDS YP_002730913.1 225850679 7676127 complement(1082051..1082515) 1 NC_012440.1 hypothetical protein 1082515 7676127 PERMA_1127 Persephonella marina EX-H1 hypothetical protein YP_002730913.1 1082051 R 123214 CDS YP_002730914.1 225850680 7675179 complement(1082484..1082885) 1 NC_012440.1 hypothetical protein 1082885 7675179 PERMA_1128 Persephonella marina EX-H1 hypothetical protein YP_002730914.1 1082484 R 123214 CDS YP_002730915.1 225850681 7675519 complement(1082897..1083427) 1 NC_012440.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; alkylhydroperoxidase AhpD core 1083427 7675519 PERMA_1129 Persephonella marina EX-H1 alkylhydroperoxidase AhpD core YP_002730915.1 1082897 R 123214 CDS YP_002730916.1 225850682 7674567 1083575..1084573 1 NC_012440.1 Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase 1084573 7674567 PERMA_1130 Persephonella marina EX-H1 malate dehydrogenase YP_002730916.1 1083575 D 123214 CDS YP_002730917.1 225850683 7674378 1084584..1085429 1 NC_012440.1 Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase 1085429 7674378 PERMA_1131 Persephonella marina EX-H1 fumarate hydratase YP_002730917.1 1084584 D 123214 CDS YP_002730918.1 225850684 7675502 1085440..1086003 1 NC_012440.1 identified by match to protein family HMM PF05683; match to protein family HMM TIGR00723; fumarate hydratase, class I 1086003 fumB 7675502 fumB Persephonella marina EX-H1 fumarate hydratase, class I YP_002730918.1 1085440 D 123214 CDS YP_002730919.1 225850685 7674993 1086036..1087202 1 NC_012440.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 1087202 sucC 7674993 sucC Persephonella marina EX-H1 succinyl-CoA synthetase subunit beta YP_002730919.1 1086036 D 123214 CDS YP_002730920.1 225850686 7674723 1087226..1088104 1 NC_012440.1 identified by match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019; succinate-CoA ligase, alphsubunit A subfamily 1088104 sucD 7674723 sucD Persephonella marina EX-H1 succinate-CoA ligase, alphsubunit A subfamily YP_002730920.1 1087226 D 123214 CDS YP_002730921.1 225850687 7674444 1088203..1090005 1 NC_012440.1 identified by match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR03710; 2-oxoglutarate ferredoxin oxidoreductase alphsubunit A 1090005 7674444 PERMA_1135 Persephonella marina EX-H1 2-oxoglutarate ferredoxin oxidoreductase alphsubunit A YP_002730921.1 1088203 D 123214 CDS YP_002730922.1 225850688 7675531 1090038..1090964 1 NC_012440.1 identified by match to protein family HMM PF02775; match to protein family HMM TIGR02177; alpha oxoglutarate ferredoxin oxidoreductase, betsubunit A 1090964 orB 7675531 orB Persephonella marina EX-H1 alpha oxoglutarate ferredoxin oxidoreductase, betsubunit A YP_002730922.1 1090038 D 123214 CDS YP_002730923.1 225850689 7674916 complement(1093018..1093620) 1 NC_012440.1 hypothetical protein 1093620 7674916 PERMA_1140 Persephonella marina EX-H1 hypothetical protein YP_002730923.1 1093018 R 123214 CDS YP_002730924.1 225850690 7674281 complement(1093644..1094123) 1 NC_012440.1 hypothetical protein 1094123 7674281 PERMA_1141 Persephonella marina EX-H1 hypothetical protein YP_002730924.1 1093644 R 123214 CDS YP_002730925.1 225850691 7674750 complement(1094755..1095324) 1 NC_012440.1 hypothetical protein 1095324 7674750 PERMA_1142 Persephonella marina EX-H1 hypothetical protein YP_002730925.1 1094755 R 123214 CDS YP_002730926.1 225850692 7674947 complement(1096173..1097477) 1 NC_012440.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; sodium-driven multidrug efflux pump protein 1097477 7674947 PERMA_1144 Persephonella marina EX-H1 sodium-driven multidrug efflux pump protein YP_002730926.1 1096173 R 123214 CDS YP_002730927.1 225850693 7676107 1097617..1099743 1 NC_012440.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 1099743 7676107 PERMA_1145 Persephonella marina EX-H1 copper-translocating P-type ATPase YP_002730927.1 1097617 D 123214 CDS YP_002730928.1 225850694 7675033 complement(1099744..1100151) 1 NC_012440.1 identified by match to protein family HMM PF00581; rhodanese domain protein 1100151 7675033 PERMA_1146 Persephonella marina EX-H1 rhodanese domain protein YP_002730928.1 1099744 R 123214 CDS YP_002730929.1 225850695 7675518 complement(1100226..1100858) 1 NC_012440.1 identified by match to protein family HMM PF00805; pentapeptide repeat protein 1100858 7675518 PERMA_1147 Persephonella marina EX-H1 pentapeptide repeat protein YP_002730929.1 1100226 R 123214 CDS YP_002730930.1 225850696 7675699 1101124..1101546 1 NC_012440.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; prokaryotic N- methylation motif domain protein 1101546 7675699 PERMA_1148 Persephonella marina EX-H1 prokaryotic N- methylation motif domain protein YP_002730930.1 1101124 D 123214 CDS YP_002730931.1 225850697 7674843 1101763..1102182 1 NC_012440.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; fimbrillin 1102182 7674843 PERMA_1149 Persephonella marina EX-H1 fimbrillin YP_002730931.1 1101763 D 123214 CDS YP_002730932.1 225850698 7674701 complement(1102185..1102694) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1102694 7674701 PERMA_1150 Persephonella marina EX-H1 hypothetical protein YP_002730932.1 1102185 R 123214 CDS YP_002730933.1 225850699 7674421 complement(1102704..1103654) 1 NC_012440.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; prokaryotic N- methylation motif domain protein 1103654 7674421 PERMA_1151 Persephonella marina EX-H1 prokaryotic N- methylation motif domain protein YP_002730933.1 1102704 R 123214 CDS YP_002730934.1 225850700 7675910 complement(1103654..1104136) 1 NC_012440.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; prokaryotic N- methylation motif domain protein 1104136 7675910 PERMA_1152 Persephonella marina EX-H1 prokaryotic N- methylation motif domain protein YP_002730934.1 1103654 R 123214 CDS YP_002730935.1 225850701 7675685 complement(1104111..1104560) 1 NC_012440.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; prokaryotic N- methylation motif domain protein 1104560 7675685 PERMA_1153 Persephonella marina EX-H1 prokaryotic N- methylation motif domain protein YP_002730935.1 1104111 R 123214 CDS YP_002730936.1 225850702 7675757 complement(1104545..1108315) 1 NC_012440.1 hypothetical protein 1108315 7675757 PERMA_1154 Persephonella marina EX-H1 hypothetical protein YP_002730936.1 1104545 R 123214 CDS YP_002730937.1 225850703 7675643 complement(1108215..1108553) 1 NC_012440.1 hypothetical protein 1108553 7675643 PERMA_1155 Persephonella marina EX-H1 hypothetical protein YP_002730937.1 1108215 R 123214 CDS YP_002730938.1 225850704 7675394 complement(1108626..1109588) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1109588 7675394 PERMA_1156 Persephonella marina EX-H1 hypothetical protein YP_002730938.1 1108626 R 123214 CDS YP_002730939.1 225850705 7674869 complement(1109585..1110229) 1 NC_012440.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two component transcriptional regulator, winged helix family 1110229 7674869 PERMA_1157 Persephonella marina EX-H1 two component transcriptional regulator, winged helix family YP_002730939.1 1109585 R 123214 CDS YP_002730940.1 225850706 7676164 1110303..1110971 1 NC_012440.1 identified by match to protein family HMM PF01128; match to protein family HMM TIGR00453; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1110971 ispD 7676164 ispD Persephonella marina EX-H1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_002730940.1 1110303 D 123214 CDS YP_002730941.1 225850707 7674538 complement(1110968..1111600) 1 NC_012440.1 identified by match to protein family HMM PF00300; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (phosphoglyceromutase) (pgam) (bpg-dependent pgam) (dpgm) 1111600 7674538 PERMA_1158 Persephonella marina EX-H1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (phosphoglyceromutase) (pgam) (bpg-dependent pgam) (dpgm) YP_002730941.1 1110968 R 123214 CDS YP_002730942.1 225850708 7675439 complement(1111597..1112064) 1 NC_012440.1 identified by match to protein family HMM PF00583; bifunctional protein argHA 1112064 7675439 PERMA_1160 Persephonella marina EX-H1 bifunctional protein argHA YP_002730942.1 1111597 R 123214 CDS YP_002730943.1 225850709 7674836 complement(1112061..1114466) 1 NC_012440.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763; ATP-dependent protease La 1114466 lon 7674836 lon Persephonella marina EX-H1 ATP-dependent protease La YP_002730943.1 1112061 R 123214 CDS YP_002730944.1 225850710 7675805 complement(1114469..1114807) 1 NC_012440.1 identified by match to protein family HMM PF00011; heat shock protein Hsp20 1114807 7675805 PERMA_1162 Persephonella marina EX-H1 heat shock protein Hsp20 YP_002730944.1 1114469 R 123214 CDS YP_002730945.1 225850711 7674725 complement(1114837..1115601) 1 NC_012440.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1115601 trmD 7674725 trmD Persephonella marina EX-H1 tRNA (guanine-N(1)-)-methyltransferase YP_002730945.1 1114837 R 123214 CDS YP_002730946.1 225850712 7674215 1116095..1116535 1 NC_012440.1 identified by match to protein family HMM PF03938; outer membrane chaperone Skp 1116535 7674215 PERMA_1165 Persephonella marina EX-H1 outer membrane chaperone Skp YP_002730946.1 1116095 D 123214 CDS YP_002730947.1 225850713 7674568 1116535..1117302 1 NC_012440.1 identified by match to protein family HMM PF01887; DUF62-containing protein 1117302 7674568 PERMA_1166 Persephonella marina EX-H1 DUF62-containing protein YP_002730947.1 1116535 D 123214 CDS YP_002730948.1 225850714 7675628 1117307..1117513 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1117513 7675628 PERMA_1168 Persephonella marina EX-H1 hypothetical protein YP_002730948.1 1117307 D 123214 CDS YP_002730949.1 225850715 7676155 complement(1117510..1119951) 1 NC_012440.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01553; long-chain-fatty-acid CoA ligase 1119951 7676155 PERMA_1167 Persephonella marina EX-H1 long-chain-fatty-acid CoA ligase YP_002730949.1 1117510 R 123214 CDS YP_002730950.1 225850716 7674923 1120394..1120780 1 NC_012440.1 hypothetical protein 1120780 7674923 PERMA_1172 Persephonella marina EX-H1 hypothetical protein YP_002730950.1 1120394 D 123214 CDS YP_002730951.1 225850717 7675589 complement(1120803..1121048) 1 NC_012440.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411; hypothetical protein 1121048 7675589 PERMA_1173 Persephonella marina EX-H1 hypothetical protein YP_002730951.1 1120803 R 123214 CDS YP_002730952.1 225850718 7676117 complement(1121059..1121550) 1 NC_012440.1 identified by match to protein family HMM PF00578; bacterioferritin comigratory protein 1121550 7676117 PERMA_1174 Persephonella marina EX-H1 bacterioferritin comigratory protein YP_002730952.1 1121059 R 123214 CDS YP_002730953.1 225850719 7675513 complement(1121543..1122124) 1 NC_012440.1 identified by match to protein family HMM PF05728; esterase 1122124 7675513 PERMA_1175 Persephonella marina EX-H1 esterase YP_002730953.1 1121543 R 123214 CDS YP_002730954.1 225850720 7675637 1122719..1123909 1 NC_012440.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 1123909 tuf_1 7675637 tuf_1 Persephonella marina EX-H1 elongation factor Tu YP_002730954.1 1122719 D 123214 CDS YP_002730955.1 225850721 7674381 1123930..1124082 1 NC_012440.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 1124082 rpmG 7674381 rpmG Persephonella marina EX-H1 50S ribosomal protein L33 YP_002730955.1 1123930 D 123214 CDS YP_002730956.1 225850722 7675639 1124191..1124379 1 NC_012440.1 identified by match to protein family HMM PF00584; match to protein family HMM TIGR00964; preprotein translocase, SecE subunit 1124379 secE 7675639 secE Persephonella marina EX-H1 preprotein translocase, SecE subunit YP_002730956.1 1124191 D 123214 CDS YP_002730957.1 225850723 7675979 1124396..1125190 1 NC_012440.1 identified by match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922; transcription termination/antitermination factor NusG 1125190 nusG 7675979 nusG Persephonella marina EX-H1 transcription termination/antitermination factor NusG YP_002730957.1 1124396 D 123214 CDS YP_002730958.1 225850724 7674239 1125215..1125652 1 NC_012440.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 1125652 rplK 7674239 rplK Persephonella marina EX-H1 50S ribosomal protein L11 YP_002730958.1 1125215 D 123214 CDS YP_002730959.1 225850725 7675798 1125655..1126383 1 NC_012440.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 1126383 rplA 7675798 rplA Persephonella marina EX-H1 50S ribosomal protein L1 YP_002730959.1 1125655 D 123214 CDS YP_002730960.1 225850726 7674656 1126400..1126945 1 NC_012440.1 identified by match to protein family HMM PF00466; ribosomal protein L10 1126945 rplJ 7674656 rplJ Persephonella marina EX-H1 ribosomal protein L10 YP_002730960.1 1126400 D 123214 CDS YP_002730961.1 225850727 7674696 1126984..1127367 1 NC_012440.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 1127367 rplL 7674696 rplL Persephonella marina EX-H1 50S ribosomal protein L7/L12 YP_002730961.1 1126984 D 123214 CDS YP_002730962.1 225850728 7675131 1127492..1131967 1 NC_012440.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; betsubunit A is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 1131967 rpoB 7675131 rpoB Persephonella marina EX-H1 DNA-directed RNA polymerase subunit beta YP_002730962.1 1127492 D 123214 CDS YP_002730963.1 225850729 7676078 1132018..1136778 1 NC_012440.1 identified by match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000; match to protein family HMM TIGR02386; DNA-directed RNA polymerase, beta' subunit 1136778 rpoC 7676078 rpoC Persephonella marina EX-H1 DNA-directed RNA polymerase, beta' subunit YP_002730963.1 1132018 D 123214 CDS YP_002730964.1 225850730 7674195 1136986..1137363 1 NC_012440.1 identified by match to protein family HMM PF00164; match to protein family HMM TIGR00981; 30S ribosomal protein S12 1137363 rpsL 7674195 rpsL Persephonella marina EX-H1 30S ribosomal protein S12 YP_002730964.1 1136986 D 123214 CDS YP_002730965.1 225850731 7675378 1137383..1137862 1 NC_012440.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 1137862 rpsG 7675378 rpsG Persephonella marina EX-H1 30S ribosomal protein S7 YP_002730965.1 1137383 D 123214 CDS YP_002730966.1 225850732 7675501 1137930..1140014 1 NC_012440.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 1140014 fusA 7675501 fusA Persephonella marina EX-H1 elongation factor G YP_002730966.1 1137930 D 123214 CDS YP_002730967.1 225850733 7675567 1140047..1141237 1 NC_012440.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 1141237 tuf_2 7675567 tuf_2 Persephonella marina EX-H1 elongation factor Tu YP_002730967.1 1140047 D 123214 CDS YP_002730968.1 225850734 7675945 1141253..1141564 1 NC_012440.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 1141564 rpsJ 7675945 rpsJ Persephonella marina EX-H1 30S ribosomal protein S10 YP_002730968.1 1141253 D 123214 CDS YP_002730969.1 225850735 7675231 1141583..1142266 1 NC_012440.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 1142266 rplC 7675231 rplC Persephonella marina EX-H1 50S ribosomal protein L3 YP_002730969.1 1141583 D 123214 CDS YP_002730970.1 225850736 7674596 1142293..1142916 1 NC_012440.1 identified by match to protein family HMM PF00573; ribosomal protein, L4/L1 family 1142916 rplD 7674596 rplD Persephonella marina EX-H1 ribosomal protein, L4/L1 family YP_002730970.1 1142293 D 123214 CDS YP_002730971.1 225850737 7675556 1142916..1143215 1 NC_012440.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 1143215 rplW 7675556 rplW Persephonella marina EX-H1 50S ribosomal protein L23 YP_002730971.1 1142916 D 123214 CDS YP_002730972.1 225850738 7675045 1143229..1144053 1 NC_012440.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 1144053 rplB 7675045 rplB Persephonella marina EX-H1 50S ribosomal protein L2 YP_002730972.1 1143229 D 123214 CDS YP_002730973.1 225850739 7675580 1144056..1144355 1 NC_012440.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 1144355 rpsS 7675580 rpsS Persephonella marina EX-H1 30S ribosomal protein S19 YP_002730973.1 1144056 D 123214 CDS YP_002730974.1 225850740 7674548 1144368..1144718 1 NC_012440.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 1144718 rplV 7674548 rplV Persephonella marina EX-H1 50S ribosomal protein L22 YP_002730974.1 1144368 D 123214 CDS YP_002730975.1 225850741 7675337 1144731..1145414 1 NC_012440.1 identified by match to protein family HMM PF00189; match to protein family HMM PF00417; match to protein family HMM PF07650; match to protein family HMM TIGR01009; 30S ribosomal protein S3 1145414 rpsC 7675337 rpsC Persephonella marina EX-H1 30S ribosomal protein S3 YP_002730975.1 1144731 D 123214 CDS YP_002730976.1 225850742 7674975 1145437..1145859 1 NC_012440.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 1145859 rplP 7674975 rplP Persephonella marina EX-H1 50S ribosomal protein L16 YP_002730976.1 1145437 D 123214 CDS YP_002730977.1 225850743 7675370 1145864..1146070 1 NC_012440.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 1146070 rpmC 7675370 rpmC Persephonella marina EX-H1 50S ribosomal protein L29 YP_002730977.1 1145864 D 123214 CDS YP_002730978.1 225850744 7675493 1146070..1146330 1 NC_012440.1 identified by match to protein family HMM PF00366; match to protein family HMM TIGR03635; 30S ribosomal protein S17 1146330 rpsQ 7675493 rpsQ Persephonella marina EX-H1 30S ribosomal protein S17 YP_002730978.1 1146070 D 123214 CDS YP_002730979.1 225850745 7676122 1146420..1146800 1 NC_012440.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 1146800 rplN 7676122 rplN Persephonella marina EX-H1 50S ribosomal protein L14 YP_002730979.1 1146420 D 123214 CDS YP_002730980.1 225850746 7675066 1146804..1147169 1 NC_012440.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 1147169 rplX 7675066 rplX Persephonella marina EX-H1 50S ribosomal protein L24 YP_002730980.1 1146804 D 123214 CDS YP_002730981.1 225850747 7675101 1147183..1147746 1 NC_012440.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 1147746 rplE 7675101 rplE Persephonella marina EX-H1 50S ribosomal protein L5 YP_002730981.1 1147183 D 123214 CDS YP_002730982.1 225850748 7674610 1147762..1147950 1 NC_012440.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 1147950 rpsN 7674610 rpsN Persephonella marina EX-H1 30S ribosomal protein S14 YP_002730982.1 1147762 D 123214 CDS YP_002730983.1 225850749 7675888 1147962..1148372 1 NC_012440.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 1148372 rpsH 7675888 rpsH Persephonella marina EX-H1 30S ribosomal protein S8 YP_002730983.1 1147962 D 123214 CDS YP_002730984.1 225850750 7675129 1148405..1148944 1 NC_012440.1 identified by match to protein family HMM PF00347; match to protein family HMM TIGR03654; 50S ribosomal protein L6 1148944 rplF 7675129 rplF Persephonella marina EX-H1 50S ribosomal protein L6 YP_002730984.1 1148405 D 123214 CDS YP_002730985.1 225850751 7674352 1148967..1149338 1 NC_012440.1 identified by match to protein family HMM PF00861; match to protein family HMM TIGR00060; 50S ribosomal protein L18 1149338 rplR 7674352 rplR Persephonella marina EX-H1 50S ribosomal protein L18 YP_002730985.1 1148967 D 123214 CDS YP_002730986.1 225850752 7675672 1149350..1149934 1 NC_012440.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 1149934 rpsE 7675672 rpsE Persephonella marina EX-H1 30S ribosomal protein S5 YP_002730986.1 1149350 D 123214 CDS YP_002730987.1 225850753 7675733 1149946..1150125 1 NC_012440.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 1150125 rpmD 7675733 rpmD Persephonella marina EX-H1 50S ribosomal protein L30 YP_002730987.1 1149946 D 123214 CDS YP_002730988.1 225850754 7674481 1150125..1150577 1 NC_012440.1 late assembly protein; 50S ribosomal protein L15 1150577 rplO 7674481 rplO Persephonella marina EX-H1 50S ribosomal protein L15 YP_002730988.1 1150125 D 123214 CDS YP_002730989.1 225850755 7675089 1150603..1151895 1 NC_012440.1 identified by match to protein family HMM PF00344; match to protein family HMM TIGR00967; preprotein translocase, SecY subunit 1151895 secY 7675089 secY Persephonella marina EX-H1 preprotein translocase, SecY subunit YP_002730989.1 1150603 D 123214 CDS YP_002730990.1 225850756 7674614 1151898..1152518 1 NC_012440.1 identified by match to protein family HMM PF00406; match to protein family HMM TIGR01351; adenylate kinase (ATP-AMP transphosphorylase) 1152518 7674614 PERMA_1217 Persephonella marina EX-H1 adenylate kinase (ATP-AMP transphosphorylase) YP_002730990.1 1151898 D 123214 CDS YP_002730991.1 225850757 7675294 1152531..1153292 1 NC_012440.1 identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase, type I 1153292 map 7675294 map Persephonella marina EX-H1 methionine aminopeptidase, type I YP_002730991.1 1152531 D 123214 CDS YP_002730992.1 225850758 7675164 1153303..1153539 1 NC_012440.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1153539 infA 7675164 infA Persephonella marina EX-H1 translation initiation factor IF-1 YP_002730992.1 1153303 D 123214 CDS YP_002730993.1 225850759 7676179 1153549..1153662 1 NC_012440.1 identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022; ribosomal protein L36 1153662 rpmJ 7676179 rpmJ Persephonella marina EX-H1 ribosomal protein L36 YP_002730993.1 1153549 D 123214 CDS YP_002730994.1 225850760 7675586 1153676..1154026 1 NC_012440.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 1154026 rpsM 7675586 rpsM Persephonella marina EX-H1 30S ribosomal protein S13 YP_002730994.1 1153676 D 123214 CDS YP_002730995.1 225850761 7674601 1154050..1154439 1 NC_012440.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 1154439 rpsK 7674601 rpsK Persephonella marina EX-H1 30S ribosomal protein S11 YP_002730995.1 1154050 D 123214 CDS YP_002730996.1 225850762 7674561 1154443..1155060 1 NC_012440.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1155060 rpsD 7674561 rpsD Persephonella marina EX-H1 30S ribosomal protein S4 YP_002730996.1 1154443 D 123214 CDS YP_002730997.1 225850763 7675510 1155102..1156076 1 NC_012440.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alphsubunit A is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 1156076 rpoA 7675510 rpoA Persephonella marina EX-H1 DNA-directed RNA polymerase subunit alpha YP_002730997.1 1155102 D 123214 CDS YP_002730998.1 225850764 7675208 1156090..1156464 1 NC_012440.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 1156464 rplQ 7675208 rplQ Persephonella marina EX-H1 50S ribosomal protein L17 YP_002730998.1 1156090 D 123214 CDS YP_002730999.1 225850765 7674470 1156467..1156769 1 NC_012440.1 identified by match to protein family HMM PF02325; yggt family protein 1156769 7674470 PERMA_1227 Persephonella marina EX-H1 yggt family protein YP_002730999.1 1156467 D 123214 CDS YP_002731000.1 225850766 7675417 complement(1156739..1157662) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1157662 7675417 PERMA_1226 Persephonella marina EX-H1 hypothetical protein YP_002731000.1 1156739 R 123214 CDS YP_002731001.1 225850767 7676030 complement(1157659..1158669) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1158669 7676030 PERMA_1228 Persephonella marina EX-H1 hypothetical protein YP_002731001.1 1157659 R 123214 CDS YP_002731002.1 225850768 7674535 complement(1158666..1159574) 1 NC_012440.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 1159574 ilvE 7674535 ilvE Persephonella marina EX-H1 branched-chain amino acid aminotransferase YP_002731002.1 1158666 R 123214 CDS YP_002731003.1 225850769 7674464 1159686..1160819 1 NC_012440.1 identified by match to protein family HMM PF00155; 8-amino-7-oxononanoate synthase (aons) (8-amino-7-ketopelargonate synthase) (7-keto-8-amino-pelargonic acid synthetase)(7-kap synthetase) (l-alanine--pimelyl-coa ligase) 1160819 7674464 PERMA_1230 Persephonella marina EX-H1 8-amino-7-oxononanoate synthase (aons) (8-amino-7-ketopelargonate synthase) (7-keto-8-amino-pelargonic acid synthetase)(7-kap synthetase) (l-alanine--pimelyl-coa ligase) YP_002731003.1 1159686 D 123214 CDS YP_002731004.1 225850770 7676028 1160816..1161049 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1161049 7676028 PERMA_1231 Persephonella marina EX-H1 hypothetical protein YP_002731004.1 1160816 D 123214 CDS YP_002731005.1 225850771 7675975 1161054..1162019 1 NC_012440.1 Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase 1162019 7675975 PERMA_1233 Persephonella marina EX-H1 2-hydroxyacid dehydrogenase YP_002731005.1 1161054 D 123214 CDS YP_002731006.1 225850772 7674595 complement(1162016..1162762) 1 NC_012440.1 hypothetical protein 1162762 7674595 PERMA_1232 Persephonella marina EX-H1 hypothetical protein YP_002731006.1 1162016 R 123214 CDS YP_002731007.1 225850773 7674252 1162816..1162992 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1162992 7674252 PERMA_1234 Persephonella marina EX-H1 hypothetical protein YP_002731007.1 1162816 D 123214 CDS YP_002731008.1 225850774 7675706 complement(1162994..1165057) 1 NC_012440.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254; response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor 1165057 7675706 PERMA_1235 Persephonella marina EX-H1 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor YP_002731008.1 1162994 R 123214 CDS YP_002731009.1 225850775 7674645 complement(1165057..1166010) 1 NC_012440.1 identified by match to protein family HMM PF09084; nitrate/sulfonate/bicarbonate ABC transporter 1166010 7674645 PERMA_1236 Persephonella marina EX-H1 nitrate/sulfonate/bicarbonate ABC transporter YP_002731009.1 1165057 R 123214 CDS YP_002731010.1 225850776 7675112 complement(1166076..1166411) 1 NC_012440.1 Fe-S cluster assembly protein NifU 1166411 7675112 PERMA_1237 Persephonella marina EX-H1 Fe-S cluster assembly protein NifU YP_002731010.1 1166076 R 123214 CDS YP_002731011.1 225850777 7674178 complement(1166547..1167488) 1 NC_012440.1 identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM PF08279; match to protein family HMM TIGR00121; biotin-(acetyl-CoA-carboxylase) ligase 1167488 7674178 PERMA_1238 Persephonella marina EX-H1 biotin-(acetyl-CoA-carboxylase) ligase YP_002731011.1 1166547 R 123214 CDS YP_002731012.1 225850778 7676068 1167567..1168568 1 NC_012440.1 identified by match to protein family HMM PF00591; match to protein family HMM PF02885; glycosyl transferase family, a/b domain protein 1168568 7676068 PERMA_1239 Persephonella marina EX-H1 glycosyl transferase family, a/b domain protein YP_002731012.1 1167567 D 123214 CDS YP_002731013.1 225850779 7674863 complement(1168579..1170381) 1 NC_012440.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1170381 lepA 7674863 lepA Persephonella marina EX-H1 GTP-binding protein LepA YP_002731013.1 1168579 R 123214 CDS YP_002731014.1 225850780 7675320 complement(1170443..1170925) 1 NC_012440.1 lipoprotein 1170925 7675320 PERMA_1241 Persephonella marina EX-H1 lipoprotein YP_002731014.1 1170443 R 123214 CDS YP_002731015.1 225850781 7675876 complement(1170925..1171302) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1171302 7675876 PERMA_1242 Persephonella marina EX-H1 hypothetical protein YP_002731015.1 1170925 R 123214 CDS YP_002731016.1 225850782 7675775 complement(1171303..1171563) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1171563 7675775 PERMA_1243 Persephonella marina EX-H1 hypothetical protein YP_002731016.1 1171303 R 123214 CDS YP_002731017.1 225850783 7675955 complement(1171573..1171863) 1 NC_012440.1 identified by match to protein family HMM PF07883; hypothetical protein 1171863 7675955 PERMA_1244 Persephonella marina EX-H1 hypothetical protein YP_002731017.1 1171573 R 123214 CDS YP_002731018.1 225850784 7674457 complement(1171860..1172306) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1172306 7674457 PERMA_1245 Persephonella marina EX-H1 hypothetical protein YP_002731018.1 1171860 R 123214 CDS YP_002731019.1 225850785 7674901 complement(1172318..1172920) 1 NC_012440.1 identified by match to protein family HMM PF03548; outer membrane lipoprotein carrier protein LolA 1172920 7674901 PERMA_1246 Persephonella marina EX-H1 outer membrane lipoprotein carrier protein LolA YP_002731019.1 1172318 R 123214 CDS YP_002731020.1 225850786 7676114 complement(1172932..1173750) 1 NC_012440.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin domain protein 1173750 7676114 PERMA_1247 Persephonella marina EX-H1 thioredoxin domain protein YP_002731020.1 1172932 R 123214 CDS YP_002731021.1 225850787 7674589 complement(1173841..1174788) 1 NC_012440.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR00269; PP-loop domain protein 1174788 7674589 PERMA_1248 Persephonella marina EX-H1 PP-loop domain protein YP_002731021.1 1173841 R 123214 CDS YP_002731022.1 225850788 7675422 complement(1174799..1175002) 1 NC_012440.1 identified by match to protein family HMM PF02597; hypothetical protein 1175002 7675422 PERMA_1249 Persephonella marina EX-H1 hypothetical protein YP_002731022.1 1174799 R 123214 CDS YP_002731023.1 225850789 7674519 complement(1175041..1175790) 1 NC_012440.1 identified by match to protein family HMM PF05013; N-formylglutamate amidohydrolase 1175790 7674519 PERMA_1250 Persephonella marina EX-H1 N-formylglutamate amidohydrolase YP_002731023.1 1175041 R 123214 CDS YP_002731024.1 225850790 7674799 complement(1175790..1177403) 1 NC_012440.1 identified by match to protein family HMM PF01019; gamma-glutamyltransferase 1177403 7674799 PERMA_1251 Persephonella marina EX-H1 gamma-glutamyltransferase YP_002731024.1 1175790 R 123214 CDS YP_002731025.1 225850791 7674571 complement(1177405..1178382) 1 NC_012440.1 identified by match to protein family HMM PF01071; match to protein family HMM PF02655; match to protein family HMM PF07478; D-alanine--D-alanine ligase 1178382 7674571 PERMA_1252 Persephonella marina EX-H1 D-alanine--D-alanine ligase YP_002731025.1 1177405 R 123214 CDS YP_002731026.1 225850792 7674347 complement(1178446..1178856) 1 NC_012440.1 identified by match to protein family HMM PF00293; adp-ribose pyrophosphatase (adp-ribose diphosphatase)(adenosine diphosphoribose pyrophosphatase) (adpr-ppase) (adp-ribosephosphohydrolase) 1178856 7674347 PERMA_1253 Persephonella marina EX-H1 adp-ribose pyrophosphatase (adp-ribose diphosphatase)(adenosine diphosphoribose pyrophosphatase) (adpr-ppase) (adp-ribosephosphohydrolase) YP_002731026.1 1178446 R 123214 CDS YP_002731027.1 225850793 7675659 1178992..1179381 1 NC_012440.1 cytochrome c-552 (cytochrome c552) 1179381 7675659 PERMA_1254 Persephonella marina EX-H1 cytochrome c-552 (cytochrome c552) YP_002731027.1 1178992 D 123214 CDS YP_002731028.1 225850794 7674953 complement(1179412..1180038) 1 NC_012440.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325; transcription regulator 1180038 7674953 PERMA_1255 Persephonella marina EX-H1 transcription regulator YP_002731028.1 1179412 R 123214 CDS YP_002731029.1 225850795 7675127 1180166..1180516 1 NC_012440.1 identified by match to protein family HMM PF00034; cytochrome c-552 (cytochrome c552) 1180516 7675127 PERMA_1256 Persephonella marina EX-H1 cytochrome c-552 (cytochrome c552) YP_002731029.1 1180166 D 123214 CDS YP_002731030.1 225850796 7675645 1180529..1182478 1 NC_012440.1 identified by match to protein family HMM PF00116; nitrous-oxide reductase 1182478 7675645 PERMA_1257 Persephonella marina EX-H1 nitrous-oxide reductase YP_002731030.1 1180529 D 123214 CDS YP_002731031.1 225850797 7674729 1182493..1183071 1 NC_012440.1 hypothetical protein 1183071 7674729 PERMA_1258 Persephonella marina EX-H1 hypothetical protein YP_002731031.1 1182493 D 123214 CDS YP_002731032.1 225850798 7675927 1183073..1183570 1 NC_012440.1 nitrous-oxide reductase accessory protein NosL 1183570 7675927 PERMA_1259 Persephonella marina EX-H1 nitrous-oxide reductase accessory protein NosL YP_002731032.1 1183073 D 123214 CDS YP_002731033.1 225850799 7674342 1183597..1184850 1 NC_012440.1 identified by match to protein family HMM PF05048; periplasmic copper-binding protein NosD 1184850 7674342 PERMA_1260 Persephonella marina EX-H1 periplasmic copper-binding protein NosD YP_002731033.1 1183597 D 123214 CDS YP_002731034.1 225850800 7674287 1184838..1185557 1 NC_012440.1 identified by match to protein family HMM PF00005; copper-transport ATP-binding protein NosF 1185557 7674287 PERMA_1261 Persephonella marina EX-H1 copper-transport ATP-binding protein NosF YP_002731034.1 1184838 D 123214 CDS YP_002731035.1 225850801 7675694 1185550..1186332 1 NC_012440.1 nitrous-oxide metabolic protein NosY 1186332 7675694 PERMA_1262 Persephonella marina EX-H1 nitrous-oxide metabolic protein NosY YP_002731035.1 1185550 D 123214 CDS YP_002731036.1 225850802 7675618 1186342..1186680 1 NC_012440.1 identified by match to protein family HMM PF00034; cytochrome c family protein 1186680 7675618 PERMA_1263 Persephonella marina EX-H1 cytochrome c family protein YP_002731036.1 1186342 D 123214 CDS YP_002731037.1 225850803 7675923 complement(1186681..1187103) 1 NC_012440.1 identified by match to protein family HMM PF04314; hypothetical protein 1187103 7675923 PERMA_1264 Persephonella marina EX-H1 hypothetical protein YP_002731037.1 1186681 R 123214 CDS YP_002731038.1 225850804 7675961 complement(1187105..1187701) 1 NC_012440.1 identified by match to protein family HMM PF00578; match to protein family HMM PF02630; electron transport protein SCO1/SenC 1187701 7675961 PERMA_1265 Persephonella marina EX-H1 electron transport protein SCO1/SenC YP_002731038.1 1187105 R 123214 CDS YP_002731039.1 225850805 7675360 1187900..1189984 1 NC_012440.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; outer membrane protein C 1189984 7675360 PERMA_1266 Persephonella marina EX-H1 outer membrane protein C YP_002731039.1 1187900 D 123214 CDS YP_002731040.1 225850806 7674370 complement(1190044..1191123) 1 NC_012440.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; response regulator receiver modulated diguanylate cyclase 1191123 7674370 PERMA_1267 Persephonella marina EX-H1 response regulator receiver modulated diguanylate cyclase YP_002731040.1 1190044 R 123214 CDS YP_002731041.1 225850807 7675347 1191260..1192237 1 NC_012440.1 identified by match to protein family HMM PF02606; match to protein family HMM TIGR00682; tetraacyldisaccharide 4'-kinase 1192237 lpxK 7675347 lpxK Persephonella marina EX-H1 tetraacyldisaccharide 4'-kinase YP_002731041.1 1191260 D 123214 CDS YP_002731042.1 225850808 7675384 1192289..1192912 1 NC_012440.1 identified by match to protein family HMM PF02616; ScpA/B protein 1192912 7675384 PERMA_1269 Persephonella marina EX-H1 ScpA/B protein YP_002731042.1 1192289 D 123214 CDS YP_002731043.1 225850809 7675793 complement(1192913..1194673) 1 NC_012440.1 identified by match to protein family HMM PF00571; match to protein family HMM PF00654; chloride channel protein 1194673 7675793 PERMA_1270 Persephonella marina EX-H1 chloride channel protein YP_002731043.1 1192913 R 123214 CDS YP_002731044.1 225850810 7674761 complement(1194722..1196170) 1 NC_012440.1 identified by match to protein family HMM PF02386; Trk system, membrane component 1196170 7674761 PERMA_1271 Persephonella marina EX-H1 Trk system, membrane component YP_002731044.1 1194722 R 123214 CDS YP_002731045.1 225850811 7675458 complement(1196163..1197455) 1 NC_012440.1 identified by match to protein family HMM PF02080; match to protein family HMM PF02254; TrkA-N domain family protein 1197455 7675458 PERMA_1272 Persephonella marina EX-H1 TrkA-N domain family protein YP_002731045.1 1196163 R 123214 CDS YP_002731046.1 225850812 7675124 1197573..1198478 1 NC_012440.1 identified by match to protein family HMM PF04055; radical SAM domain protein 1198478 7675124 PERMA_1273 Persephonella marina EX-H1 radical SAM domain protein YP_002731046.1 1197573 D 123214 CDS YP_002731047.1 225850813 7675717 1198527..1199540 1 NC_012440.1 identified by match to protein family HMM PF04966; carbohydrate-selective porin, OprB family 1199540 7675717 PERMA_1274 Persephonella marina EX-H1 carbohydrate-selective porin, OprB family YP_002731047.1 1198527 D 123214 CDS YP_002731048.1 225850814 7674449 1199552..1199749 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1199749 7674449 PERMA_1275 Persephonella marina EX-H1 hypothetical protein YP_002731048.1 1199552 D 123214 CDS YP_002731049.1 225850815 7674354 1199746..1200258 1 NC_012440.1 hypothetical protein 1200258 7674354 PERMA_1276 Persephonella marina EX-H1 hypothetical protein YP_002731049.1 1199746 D 123214 CDS YP_002731050.1 225850816 7674350 1200255..1200731 1 NC_012440.1 hypothetical protein 1200731 7674350 PERMA_1277 Persephonella marina EX-H1 hypothetical protein YP_002731050.1 1200255 D 123214 CDS YP_002731051.1 225850817 7674526 1200728..1201177 1 NC_012440.1 hypothetical protein 1201177 7674526 PERMA_1279 Persephonella marina EX-H1 hypothetical protein YP_002731051.1 1200728 D 123214 CDS YP_002731052.1 225850818 7676017 complement(1201136..1202107) 1 NC_012440.1 identified by match to protein family HMM PF02424; thiamine biosynthesis lipoprotein 1202107 7676017 PERMA_1278 Persephonella marina EX-H1 thiamine biosynthesis lipoprotein YP_002731052.1 1201136 R 123214 CDS YP_002731053.1 225850819 7675413 1202213..1203463 1 NC_012440.1 identified by match to protein family HMM PF07396; Phosphate-selective porin O and P superfamily protein 1203463 7675413 PERMA_1280 Persephonella marina EX-H1 Phosphate-selective porin O and P superfamily protein YP_002731053.1 1202213 D 123214 CDS YP_002731054.1 225850820 7676001 1203476..1205461 1 NC_012440.1 lipoprotein 1205461 7676001 PERMA_1282 Persephonella marina EX-H1 lipoprotein YP_002731054.1 1203476 D 123214 CDS YP_002731055.1 225850821 7675317 complement(1205458..1206327) 1 NC_012440.1 identified by match to protein family HMM PF02153; match to protein family HMM PF03446; prephenate dehydrogenase 1206327 7675317 PERMA_1281 Persephonella marina EX-H1 prephenate dehydrogenase YP_002731055.1 1205458 R 123214 CDS YP_002731056.1 225850822 7675608 complement(1206337..1207179) 1 NC_012440.1 identified by match to protein family HMM PF00582; universal stress protein family protein 1207179 7675608 PERMA_1283 Persephonella marina EX-H1 universal stress protein family protein YP_002731056.1 1206337 R 123214 CDS YP_002731057.1 225850823 7674969 complement(1207173..1208387) 1 NC_012440.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation diffusion facilitator family transporter 1208387 7674969 PERMA_1284 Persephonella marina EX-H1 cation diffusion facilitator family transporter YP_002731057.1 1207173 R 123214 CDS YP_002731058.1 225850824 7675825 complement(1208387..1209517) 1 NC_012440.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1209517 carA 7675825 carA Persephonella marina EX-H1 carbamoyl phosphate synthase small subunit YP_002731058.1 1208387 R 123214 CDS YP_002731059.1 225850825 7674989 1209621..1210445 1 NC_012440.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1210445 ispE 7674989 ispE Persephonella marina EX-H1 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_002731059.1 1209621 D 123214 CDS YP_002731060.1 225850826 7674942 1210574..1211509 1 NC_012440.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01251; ribose-Phosphate pyrophosphokinase 1211509 7674942 PERMA_1288 Persephonella marina EX-H1 ribose-Phosphate pyrophosphokinase YP_002731060.1 1210574 D 123214 CDS YP_002731061.1 225850827 7674663 1211527..1212126 1 NC_012440.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 1212126 7674663 PERMA_1289 Persephonella marina EX-H1 50S ribosomal protein L25/general stress protein Ctc YP_002731061.1 1211527 D 123214 CDS YP_002731062.1 225850828 7676123 1212126..1212695 1 NC_012440.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1212695 pth 7676123 pth Persephonella marina EX-H1 peptidyl-tRNA hydrolase YP_002731062.1 1212126 D 123214 CDS YP_002731063.1 225850829 7674495 1212762..1213109 1 NC_012440.1 identified by match to protein family HMM PF01250; match to protein family HMM TIGR00166; ribosomal protein S6 1213109 rpsF 7674495 rpsF Persephonella marina EX-H1 ribosomal protein S6 YP_002731063.1 1212762 D 123214 CDS YP_002731064.1 225850830 7675613 1213120..1213533 1 NC_012440.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein family protein 1213533 7675613 PERMA_1292 Persephonella marina EX-H1 single-strand binding protein family protein YP_002731064.1 1213120 D 123214 CDS YP_002731065.1 225850831 7674710 1213557..1213811 1 NC_012440.1 identified by match to protein family HMM PF01084; match to protein family HMM TIGR00165; ribosomal protein S18 1213811 rpsR 7674710 rpsR Persephonella marina EX-H1 ribosomal protein S18 YP_002731065.1 1213557 D 123214 CDS YP_002731066.1 225850832 7675833 1213826..1214275 1 NC_012440.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 1214275 rplI 7675833 rplI Persephonella marina EX-H1 50S ribosomal protein L9 YP_002731066.1 1213826 D 123214 CDS YP_002731067.1 225850833 7674810 1214385..1215836 1 NC_012440.1 identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665; replicative DNA helicase 1215836 dnaB 7674810 dnaB Persephonella marina EX-H1 replicative DNA helicase YP_002731067.1 1214385 D 123214 CDS YP_002731068.1 225850834 7675172 1215838..1216584 1 NC_012440.1 identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056; organic solvent ABC transporter permease 1216584 7675172 PERMA_1296 Persephonella marina EX-H1 organic solvent ABC transporter permease YP_002731068.1 1215838 D 123214 CDS YP_002731069.1 225850835 7676019 1216613..1216900 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1216900 7676019 PERMA_1297 Persephonella marina EX-H1 hypothetical protein YP_002731069.1 1216613 D 123214 CDS YP_002731070.1 225850836 7674339 1216903..1217877 1 NC_012440.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 1217877 pfkA 7674339 pfkA Persephonella marina EX-H1 6-phosphofructokinase YP_002731070.1 1216903 D 123214 CDS YP_002731071.1 225850837 7675277 1217900..1218175 1 NC_012440.1 septation protein spoVG 1218175 7675277 PERMA_1299 Persephonella marina EX-H1 septation protein spoVG YP_002731071.1 1217900 D 123214 CDS YP_002731072.1 225850838 7674599 complement(1218176..1218898) 1 NC_012440.1 hypothetical protein 1218898 7674599 PERMA_1300 Persephonella marina EX-H1 hypothetical protein YP_002731072.1 1218176 R 123214 CDS YP_002731073.1 225850839 7675473 complement(1218955..1219242) 1 NC_012440.1 ferredoxin EncQ 1219242 7675473 PERMA_1301 Persephonella marina EX-H1 ferredoxin EncQ YP_002731073.1 1218955 R 123214 CDS YP_002731074.1 225850840 7676129 1219322..1220836 1 NC_012440.1 identified by match to protein family HMM PF00795; match to protein family HMM TIGR00546; apolipoprotein N-acyltransferase 1220836 lnt 7676129 lnt Persephonella marina EX-H1 apolipoprotein N-acyltransferase YP_002731074.1 1219322 D 123214 CDS YP_002731075.1 225850841 7674930 1221051..1222157 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1222157 7674930 PERMA_1304 Persephonella marina EX-H1 hypothetical protein YP_002731075.1 1221051 D 123214 CDS YP_002731076.1 225850842 7675766 1222390..1222506 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1222506 7675766 PERMA_1305 Persephonella marina EX-H1 hypothetical protein YP_002731076.1 1222390 D 123214 CDS YP_002731077.1 225850843 7674247 complement(1222851..1223561) 1 NC_012440.1 identified by match to protein family HMM PF01863; zinc metalloprotease 1223561 7674247 PERMA_1306 Persephonella marina EX-H1 zinc metalloprotease YP_002731077.1 1222851 R 123214 CDS YP_002731078.1 225850844 7674296 complement(1223563..1226724) 1 NC_012440.1 identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348; type I restriction enzyme R protein (HsdR) 1226724 hsdR 7674296 hsdR Persephonella marina EX-H1 type I restriction enzyme R protein (HsdR) YP_002731078.1 1223563 R 123214 CDS YP_002731079.1 225850845 7675925 complement(1226727..1228946) 1 NC_012440.1 macrophage infection protein, MimD 1228946 7675925 PERMA_1308 Persephonella marina EX-H1 macrophage infection protein, MimD YP_002731079.1 1226727 R 123214 CDS YP_002731080.1 225850846 7674988 complement(1228897..1230243) 1 NC_012440.1 identified by match to protein family HMM PF01420; type I restriction-modification system specificty subunit 1230243 7674988 PERMA_1309 Persephonella marina EX-H1 type I restriction-modification system specificty subunit YP_002731080.1 1228897 R 123214 CDS YP_002731081.1 225850847 7674778 complement(1230236..1231006) 1 NC_012440.1 identified by match to protein family HMM TIGR02391; hypothetical protein 1231006 7674778 PERMA_1310 Persephonella marina EX-H1 hypothetical protein YP_002731081.1 1230236 R 123214 CDS YP_002731082.1 225850848 7674868 complement(1231017..1233713) 1 NC_012440.1 identified by match to protein family HMM PF01170; match to protein family HMM PF02384; match to protein family HMM TIGR00497; type I restriction enzyme M protein (HsdM) 1233713 hsdM 7674868 hsdM Persephonella marina EX-H1 type I restriction enzyme M protein (HsdM) YP_002731082.1 1231017 R 123214 CDS YP_002731083.1 225850849 7675962 complement(1233974..1235143) 1 NC_012440.1 hypothetical protein 1235143 7675962 PERMA_1312 Persephonella marina EX-H1 hypothetical protein YP_002731083.1 1233974 R 123214 CDS YP_002731084.1 225850850 7675163 complement(1235161..1236072) 1 NC_012440.1 identified by match to protein family HMM PF05621; transposon, transposition helper protein C 1236072 7675163 PERMA_1313 Persephonella marina EX-H1 transposon, transposition helper protein C YP_002731084.1 1235161 R 123214 CDS YP_002731085.1 225850851 7676026 complement(1236077..1237936) 1 NC_012440.1 identified by match to protein family HMM PF00665; match to protein family HMM PF09299; TniA transposase 1237936 7676026 PERMA_1314 Persephonella marina EX-H1 TniA transposase YP_002731085.1 1236077 R 123214 CDS YP_002731086.1 225850852 7675641 complement(1238311..1238457) 1 NC_012440.1 hypothetical protein 1238457 7675641 PERMA_1315 Persephonella marina EX-H1 hypothetical protein YP_002731086.1 1238311 R 123214 CDS YP_002731087.1 225850853 7674338 1239276..1239716 1 NC_012440.1 lipoprotein 1239716 7674338 PERMA_1316 Persephonella marina EX-H1 lipoprotein YP_002731087.1 1239276 D 123214 CDS YP_002731088.1 225850854 7674944 1240175..1241335 1 NC_012440.1 identified by match to protein family HMM PF01637; ATPase 1241335 7674944 PERMA_1319 Persephonella marina EX-H1 ATPase YP_002731088.1 1240175 D 123214 CDS YP_002731089.1 225850855 7674866 complement(1241515..1242159) 1 NC_012440.1 identified by match to protein family HMM PF04055; radical SAM domain protein 1242159 7674866 PERMA_1320 Persephonella marina EX-H1 radical SAM domain protein YP_002731089.1 1241515 R 123214 CDS YP_002731090.1 225850856 7674685 complement(1242247..1242597) 1 NC_012440.1 hypothetical protein 1242597 7674685 PERMA_1321 Persephonella marina EX-H1 hypothetical protein YP_002731090.1 1242247 R 123214 CDS YP_002731091.1 225850857 7675668 complement(1242609..1243100) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1243100 7675668 PERMA_1322 Persephonella marina EX-H1 hypothetical protein YP_002731091.1 1242609 R 123214 CDS YP_002731092.1 225850858 7674809 1243221..1244561 1 NC_012440.1 identified by match to protein family HMM PF05697; match to protein family HMM PF05698; match to protein family HMM TIGR00115; trigger factor 1244561 tig 7674809 tig Persephonella marina EX-H1 trigger factor YP_002731092.1 1243221 D 123214 CDS YP_002731093.1 225850859 7675916 1244565..1245173 1 NC_012440.1 identified by match to protein family HMM PF00574; match to protein family HMM TIGR00493; ATP-dependent Clp protease, proteolytic subunit ClpP 1245173 clpP 7675916 clpP Persephonella marina EX-H1 ATP-dependent Clp protease, proteolytic subunit ClpP YP_002731093.1 1244565 D 123214 CDS YP_002731094.1 225850860 7675374 1245176..1246411 1 NC_012440.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1246411 clpX 7675374 clpX Persephonella marina EX-H1 ATP-dependent protease ATP-binding subunit ClpX YP_002731094.1 1245176 D 123214 CDS YP_002731095.1 225850861 7676119 1246413..1247024 1 NC_012440.1 identified by match to protein family HMM PF01926; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR03598; ribosome biogenesis GTP-binding protein YsxC 1247024 ysxC 7676119 ysxC Persephonella marina EX-H1 ribosome biogenesis GTP-binding protein YsxC YP_002731095.1 1246413 D 123214 CDS YP_002731096.1 225850862 7674476 1247078..1247848 1 NC_012440.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1247848 trpA 7674476 trpA Persephonella marina EX-H1 tryptophan synthase subunit alpha YP_002731096.1 1247078 D 123214 CDS YP_002731097.1 225850863 7675991 1247845..1248465 1 NC_012440.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 1248465 hisH 7675991 hisH Persephonella marina EX-H1 imidazole glycerol phosphate synthase subunit HisH YP_002731097.1 1247845 D 123214 CDS YP_002731098.1 225850864 7675013 1248555..1249940 1 NC_012440.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00538; oxygen-independent coproporphyrinogen III oxidase 1249940 hemN 7675013 hemN Persephonella marina EX-H1 oxygen-independent coproporphyrinogen III oxidase YP_002731098.1 1248555 D 123214 CDS YP_002731099.1 225850865 7674213 1249941..1250210 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1250210 7674213 PERMA_1330 Persephonella marina EX-H1 hypothetical protein YP_002731099.1 1249941 D 123214 CDS YP_002731100.1 225850866 7675880 1250252..1251181 1 NC_012440.1 hypothetical protein 1251181 7675880 PERMA_1331 Persephonella marina EX-H1 hypothetical protein YP_002731100.1 1250252 D 123214 CDS YP_002731101.1 225850867 7674963 1251248..1254013 1 NC_012440.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 1254013 uvrA 7674963 uvrA Persephonella marina EX-H1 excinuclease ABC subunit A YP_002731101.1 1251248 D 123214 CDS YP_002731102.1 225850868 7675545 1255188..1255985 1 NC_012440.1 identified by match to protein family HMM PF01881; match to protein family HMM TIGR01877; CRISPR-associated protein Cas6 1255985 cas_2 7675545 cas_2 Persephonella marina EX-H1 CRISPR-associated protein Cas6 YP_002731102.1 1255188 D 123214 CDS YP_002731103.1 225850869 7675711 1255985..1257688 1 NC_012440.1 identified by match to protein family HMM TIGR01908; CRISPR-associated cxxc_cxxc protein Cst1 1257688 7675711 PERMA_1334 Persephonella marina EX-H1 CRISPR-associated cxxc_cxxc protein Cst1 YP_002731103.1 1255985 D 123214 CDS YP_002731104.1 225850870 7675732 1257681..1258613 1 NC_012440.1 identified by match to protein family HMM TIGR01875; match to protein family HMM TIGR02585; CRISPR-associated regulatory protein, devr family 1258613 cst 7675732 cst Persephonella marina EX-H1 CRISPR-associated regulatory protein, devr family YP_002731104.1 1257681 D 123214 CDS YP_002731105.1 225850871 7675097 1258684..1258932 1 NC_012440.1 identified by match to protein family HMM TIGR01552; prevent-host-death family protein 1258932 7675097 PERMA_1336 Persephonella marina EX-H1 prevent-host-death family protein YP_002731105.1 1258684 D 123214 CDS YP_002731106.1 225850872 7674249 1259189..1259950 1 NC_012440.1 identified by match to protein family HMM TIGR01895; match to protein family HMM TIGR02593; CRISPR-associated protein Cas5, tneap subtype 1259950 cas5t 7674249 cas5t Persephonella marina EX-H1 CRISPR-associated protein Cas5, tneap subtype YP_002731106.1 1259189 D 123214 CDS YP_002731107.1 225850873 7676102 1259969..1262218 1 NC_012440.1 identified by match to protein family HMM PF00271; match to protein family HMM TIGR01587; match to protein family HMM TIGR01596; CRISPR-associated helicase Cas3 1262218 7676102 PERMA_1338 Persephonella marina EX-H1 CRISPR-associated helicase Cas3 YP_002731107.1 1259969 D 123214 CDS YP_002731108.1 225850874 7675713 1262347..1263135 1 NC_012440.1 YcgL 1263135 7675713 PERMA_1339 Persephonella marina EX-H1 YcgL YP_002731108.1 1262347 D 123214 CDS YP_002731109.1 225850875 7674680 1263120..1263632 1 NC_012440.1 identified by match to protein family HMM PF01930; match to protein family HMM TIGR00372; CRISPR-associated protein Cas4 1263632 cas_3 7674680 cas_3 Persephonella marina EX-H1 CRISPR-associated protein Cas4 YP_002731109.1 1263120 D 123214 CDS YP_002731110.1 225850876 7675622 complement(1263636..1265981) 1 NC_012440.1 hypothetical protein 1265981 7675622 PERMA_1341 Persephonella marina EX-H1 hypothetical protein YP_002731110.1 1263636 R 123214 CDS YP_002731111.1 225850877 7675997 complement(1266004..1267401) 1 NC_012440.1 identified by match to protein family HMM PF04411; hypothetical protein 1267401 7675997 PERMA_1342 Persephonella marina EX-H1 hypothetical protein YP_002731111.1 1266004 R 123214 CDS YP_002731112.1 225850878 7675393 1267468..1268463 1 NC_012440.1 identified by match to protein family HMM PF01867; match to protein family HMM TIGR00287; match to protein family HMM TIGR03641; CRISPR-associated protein Cas1 1268463 cas_4 7675393 cas_4 Persephonella marina EX-H1 CRISPR-associated protein Cas1 YP_002731112.1 1267468 D 123214 CDS YP_002731113.1 225850879 7675932 1268465..1268731 1 NC_012440.1 identified by match to protein family HMM PF02647; match to protein family HMM TIGR01573; CRISPR-associated protein Cas2 1268731 7675932 PERMA_1344 Persephonella marina EX-H1 CRISPR-associated protein Cas2 YP_002731113.1 1268465 D 123214 CDS YP_002731114.1 225850880 7674400 complement(1269008..1269172) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1269172 7674400 PERMA_1345 Persephonella marina EX-H1 hypothetical protein YP_002731114.1 1269008 R 123214 CDS YP_002731115.1 225850881 7675186 1269835..1269963 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1269963 7675186 PERMA_1346 Persephonella marina EX-H1 hypothetical protein YP_002731115.1 1269835 D 123214 CDS YP_002731116.1 225850882 7675219 complement(1270051..1270290) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1270290 7675219 PERMA_1347 Persephonella marina EX-H1 hypothetical protein YP_002731116.1 1270051 R 123214 CDS YP_002731117.1 225850883 7675204 complement(1270403..1271854) 1 NC_012440.1 lipoprotein 1271854 7675204 PERMA_1348 Persephonella marina EX-H1 lipoprotein YP_002731117.1 1270403 R 123214 CDS YP_002731118.1 225850884 7675555 1272816..1273445 1 NC_012440.1 identified by match to protein family HMM PF08241; SAM-dependent methyltransferase, UbiE/COQ5 family 1273445 7675555 PERMA_1349 Persephonella marina EX-H1 SAM-dependent methyltransferase, UbiE/COQ5 family YP_002731118.1 1272816 D 123214 CDS YP_002731119.1 225850885 7676109 complement(1273446..1274303) 1 NC_012440.1 identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255; hypothetical protein 1274303 7676109 PERMA_1350 Persephonella marina EX-H1 hypothetical protein YP_002731119.1 1273446 R 123214 CDS YP_002731120.1 225850886 7674434 complement(1274314..1275402) 1 NC_012440.1 identified by match to protein family HMM PF01988; match to protein family HMM PF02915; rubrerythrin subfamily 1275402 7674434 PERMA_1351 Persephonella marina EX-H1 rubrerythrin subfamily YP_002731120.1 1274314 R 123214 CDS YP_002731121.1 225850887 7675948 complement(1275399..1276595) 1 NC_012440.1 identified by match to protein family HMM PF04413; bifunctional glycosyltransferase/methyltransferase 1276595 7675948 PERMA_1352 Persephonella marina EX-H1 bifunctional glycosyltransferase/methyltransferase YP_002731121.1 1275399 R 123214 CDS YP_002731122.1 225850888 7674620 complement(1276595..1277329) 1 NC_012440.1 identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245; hypothetical protein 1277329 7674620 PERMA_1353 Persephonella marina EX-H1 hypothetical protein YP_002731122.1 1276595 R 123214 CDS YP_002731123.1 225850889 7675239 complement(1277383..1278522) 1 NC_012440.1 identified by match to protein family HMM PF02684; match to protein family HMM TIGR00215; lipid-A-disaccharide synthase 1278522 lpxB 7675239 lpxB Persephonella marina EX-H1 lipid-A-disaccharide synthase YP_002731123.1 1277383 R 123214 CDS YP_002731124.1 225850890 7675419 1278602..1279612 1 NC_012440.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433; biotin synthase 1279612 bioB 7675419 bioB Persephonella marina EX-H1 biotin synthase YP_002731124.1 1278602 D 123214 CDS YP_002731125.1 225850891 7675922 1279655..1280599 1 NC_012440.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; VI polysaccharide biosynthesis protein VipB/tviC 1280599 7675922 PERMA_1357 Persephonella marina EX-H1 VI polysaccharide biosynthesis protein VipB/tviC YP_002731125.1 1279655 D 123214 CDS YP_002731126.1 225850892 7675815 complement(1280596..1283562) 1 NC_012440.1 hypothetical protein 1283562 7675815 PERMA_1356 Persephonella marina EX-H1 hypothetical protein YP_002731126.1 1280596 R 123214 CDS YP_002731127.1 225850893 7674724 complement(1284631..1287333) 1 NC_012440.1 polysaccharide deacetylase 1287333 7674724 PERMA_1358 Persephonella marina EX-H1 polysaccharide deacetylase YP_002731127.1 1284631 R 123214 CDS YP_002731128.1 225850894 7675350 complement(1287311..1288684) 1 NC_012440.1 PelG 1288684 7675350 PERMA_1359 Persephonella marina EX-H1 PelG YP_002731128.1 1287311 R 123214 CDS YP_002731129.1 225850895 7675612 complement(1288660..1290192) 1 NC_012440.1 identified by match to protein family HMM PF00534; glycosyl transferase, group 1 1290192 7675612 PERMA_1360 Persephonella marina EX-H1 glycosyl transferase, group 1 YP_002731129.1 1288660 R 123214 CDS YP_002731130.1 225850896 7674337 complement(1290192..1291178) 1 NC_012440.1 hypothetical protein 1291178 7674337 PERMA_1361 Persephonella marina EX-H1 hypothetical protein YP_002731130.1 1290192 R 123214 CDS YP_002731131.1 225850897 7675832 complement(1291181..1292428) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1292428 7675832 PERMA_1362 Persephonella marina EX-H1 hypothetical protein YP_002731131.1 1291181 R 123214 CDS YP_002731132.1 225850898 7675386 complement(1292429..1292932) 1 NC_012440.1 lipoprotein 1292932 7675386 PERMA_1363 Persephonella marina EX-H1 lipoprotein YP_002731132.1 1292429 R 123214 CDS YP_002731133.1 225850899 7675943 complement(1292962..1293849) 1 NC_012440.1 similar to protein found in mitochondrial proteome protein 30; identified by match to protein family HMM PF00753; N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase d, (nape-hydrolyzing phospholipased) (nape-pld) 1293849 7675943 PERMA_1364 Persephonella marina EX-H1 N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase d, (nape-hydrolyzing phospholipased) (nape-pld) YP_002731133.1 1292962 R 123214 CDS YP_002731134.1 225850900 7675578 complement(1293803..1294588) 1 NC_012440.1 identified by match to protein family HMM PF03819; match to protein family HMM TIGR00444; MazG family protein 1294588 7675578 PERMA_1365 Persephonella marina EX-H1 MazG family protein YP_002731134.1 1293803 R 123214 CDS YP_002731135.1 225850901 7676156 1294648..1295274 1 NC_012440.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01091; uracil phosphoribosyltransferase 1295274 upp 7676156 upp Persephonella marina EX-H1 uracil phosphoribosyltransferase YP_002731135.1 1294648 D 123214 CDS YP_002731136.1 225850902 7675693 1295271..1295879 1 NC_012440.1 identified by match to protein family HMM PF01810; transporter, LysE family 1295879 7675693 PERMA_1367 Persephonella marina EX-H1 transporter, LysE family YP_002731136.1 1295271 D 123214 CDS YP_002731137.1 225850903 7674277 1295881..1296744 1 NC_012440.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; NADH dehydrogenase 1296744 7674277 PERMA_1368 Persephonella marina EX-H1 NADH dehydrogenase YP_002731137.1 1295881 D 123214 CDS YP_002731138.1 225850904 7674699 1296746..1297054 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1297054 7674699 PERMA_1369 Persephonella marina EX-H1 hypothetical protein YP_002731138.1 1296746 D 123214 CDS YP_002731139.1 225850905 7675785 1297057..1298448 1 NC_012440.1 peptidoglycan-binding domain 1 protein 1298448 7675785 PERMA_1370 Persephonella marina EX-H1 peptidoglycan-binding domain 1 protein YP_002731139.1 1297057 D 123214 CDS YP_002731140.1 225850906 7675275 1298445..1299530 1 NC_012440.1 hypothetical protein 1299530 7675275 PERMA_1371 Persephonella marina EX-H1 hypothetical protein YP_002731140.1 1298445 D 123214 CDS YP_002731141.1 225850907 7674736 1299500..1300588 1 NC_012440.1 identified by match to protein family HMM TIGR01409; Tat pathway signal sequence domain protein 1300588 7674736 PERMA_1373 Persephonella marina EX-H1 Tat pathway signal sequence domain protein YP_002731141.1 1299500 D 123214 CDS YP_002731142.1 225850908 7675071 complement(1300585..1301994) 1 NC_012440.1 hypothetical protein 1301994 7675071 PERMA_1372 Persephonella marina EX-H1 hypothetical protein YP_002731142.1 1300585 R 123214 CDS YP_002731143.1 225850909 7674194 complement(1302732..1302995) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1302995 7674194 PERMA_1374 Persephonella marina EX-H1 hypothetical protein YP_002731143.1 1302732 R 123214 CDS YP_002731144.1 225850910 7675485 complement(1303006..1303125) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1303125 7675485 PERMA_1375 Persephonella marina EX-H1 hypothetical protein YP_002731144.1 1303006 R 123214 CDS YP_002731145.1 225850911 7674662 complement(1303294..1304391) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1304391 7674662 PERMA_1376 Persephonella marina EX-H1 hypothetical protein YP_002731145.1 1303294 R 123214 CDS YP_002731146.1 225850912 7675250 complement(1304527..1304871) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1304871 7675250 PERMA_1377 Persephonella marina EX-H1 hypothetical protein YP_002731146.1 1304527 R 123214 CDS YP_002731147.1 225850913 7674759 complement(1304902..1305864) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1305864 7674759 PERMA_1378 Persephonella marina EX-H1 hypothetical protein YP_002731147.1 1304902 R 123214 CDS YP_002731148.1 225850914 7675964 complement(1305987..1306904) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1306904 7675964 PERMA_1379 Persephonella marina EX-H1 hypothetical protein YP_002731148.1 1305987 R 123214 CDS YP_002731149.1 225850915 7675988 complement(1307386..1308159) 1 NC_012440.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1308159 surE 7675988 surE Persephonella marina EX-H1 stationary phase survival protein SurE YP_002731149.1 1307386 R 123214 CDS YP_002731150.1 225850916 7674941 complement(1308306..1308596) 1 NC_012440.1 identified by match to protein family HMM PF00216; histone family protein DNA-binding protein 1308596 7674941 PERMA_1382 Persephonella marina EX-H1 histone family protein DNA-binding protein YP_002731150.1 1308306 R 123214 CDS YP_002731151.1 225850917 7676141 complement(1308637..1309155) 1 NC_012440.1 identified by match to protein family HMM PF00132; transferase, hexapeptide repeat family 1309155 7676141 PERMA_1383 Persephonella marina EX-H1 transferase, hexapeptide repeat family YP_002731151.1 1308637 R 123214 CDS YP_002731152.1 225850918 7675383 complement(1309142..1309261) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1309261 7675383 PERMA_1384 Persephonella marina EX-H1 hypothetical protein YP_002731152.1 1309142 R 123214 CDS YP_002731153.1 225850919 7674791 complement(1309262..1309747) 1 NC_012440.1 identified by match to protein family HMM PF01242; 6-pyruvoyl tetrahydrobiopterin synthase (ptps)(ptp synthase) 1309747 7674791 PERMA_1385 Persephonella marina EX-H1 6-pyruvoyl tetrahydrobiopterin synthase (ptps)(ptp synthase) YP_002731153.1 1309262 R 123214 CDS YP_002731154.1 225850920 7676034 complement(1309759..1310538) 1 NC_012440.1 identified by match to protein family HMM PF00175; dihydroorotate dehydrogenase electron transfer subunit 1310538 7676034 PERMA_1386 Persephonella marina EX-H1 dihydroorotate dehydrogenase electron transfer subunit YP_002731154.1 1309759 R 123214 CDS YP_002731155.1 225850921 7675630 complement(1310643..1312352) 1 NC_012440.1 identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01812; match to protein family HMM TIGR01816; succinate dehydrogenase, flavoprotein subunit 1312352 sdhA 7675630 sdhA Persephonella marina EX-H1 succinate dehydrogenase, flavoprotein subunit YP_002731155.1 1310643 R 123214 CDS YP_002731156.1 225850922 7675316 complement(1312448..1313737) 1 NC_012440.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 1313737 purD 7675316 purD Persephonella marina EX-H1 phosphoribosylamine--glycine ligase YP_002731156.1 1312448 R 123214 CDS YP_002731157.1 225850923 7675291 complement(1313764..1315044) 1 NC_012440.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase 1315044 lysA 7675291 lysA Persephonella marina EX-H1 diaminopimelate decarboxylase YP_002731157.1 1313764 R 123214 CDS YP_002731158.1 225850924 7675780 1315128..1315727 1 NC_012440.1 identified by match to protein family HMM PF03775; match to protein family HMM TIGR01222; septum site-determining protein MinC 1315727 minC 7675780 minC Persephonella marina EX-H1 septum site-determining protein MinC YP_002731158.1 1315128 D 123214 CDS YP_002731159.1 225850925 7674617 1315747..1316559 1 NC_012440.1 identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968; septum site-determining protein MinD 1316559 minD 7674617 minD Persephonella marina EX-H1 septum site-determining protein MinD YP_002731159.1 1315747 D 123214 CDS YP_002731160.1 225850926 7675606 1316562..1316816 1 NC_012440.1 identified by match to protein family HMM PF03776; match to protein family HMM TIGR01215; cell division topological specificity factor MinE 1316816 minE 7675606 minE Persephonella marina EX-H1 cell division topological specificity factor MinE YP_002731160.1 1316562 D 123214 CDS YP_002731161.1 225850927 7675009 1316813..1317469 1 NC_012440.1 identified by match to protein family HMM PF01634; match to protein family HMM TIGR00070; ATP phosphoribosyltransferase 1317469 hisG 7675009 hisG Persephonella marina EX-H1 ATP phosphoribosyltransferase YP_002731161.1 1316813 D 123214 CDS YP_002731162.1 225850928 7676008 1317471..1318931 1 NC_012440.1 identified by match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM TIGR01173; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 1318931 glmU 7676008 glmU Persephonella marina EX-H1 UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase YP_002731162.1 1317471 D 123214 CDS YP_002731163.1 225850929 7674341 1318928..1319788 1 NC_012440.1 identified by match to protein family HMM PF00639; match to protein family HMM PF09312; SurA N- domain family 1319788 7674341 PERMA_1395 Persephonella marina EX-H1 SurA N- domain family YP_002731163.1 1318928 D 123214 CDS YP_002731164.1 225850930 7674681 1319792..1320811 1 NC_012440.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 1320811 trpD 7674681 trpD Persephonella marina EX-H1 anthranilate phosphoribosyltransferase YP_002731164.1 1319792 D 123214 CDS YP_002731165.1 225850931 7675837 1320814..1321125 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1321125 7675837 PERMA_1397 Persephonella marina EX-H1 hypothetical protein YP_002731165.1 1320814 D 123214 CDS YP_002731166.1 225850932 7674785 1321138..1321923 1 NC_012440.1 identified by match to protein family HMM PF00106; 3-oxoacyl-ACP reductase 1321923 7674785 PERMA_1399 Persephonella marina EX-H1 3-oxoacyl-ACP reductase YP_002731166.1 1321138 D 123214 CDS YP_002731167.1 225850933 7674951 complement(1321920..1322411) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1322411 7674951 PERMA_1398 Persephonella marina EX-H1 hypothetical protein YP_002731167.1 1321920 R 123214 CDS YP_002731168.1 225850934 7675593 complement(1322411..1323136) 1 NC_012440.1 identified by match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02479; match to protein family HMM TIGR02937; RNA polymerase sigma-D factor (Sigma-28) 1323136 7675593 PERMA_1400 Persephonella marina EX-H1 RNA polymerase sigma-D factor (Sigma-28) YP_002731168.1 1322411 R 123214 CDS YP_002731169.1 225850935 7675947 complement(1323150..1324016) 1 NC_012440.1 identified by match to protein family HMM PF01656; cobyrinic Acid a,c-diamide synthase 1324016 7675947 PERMA_1401 Persephonella marina EX-H1 cobyrinic Acid a,c-diamide synthase YP_002731169.1 1323150 R 123214 CDS YP_002731170.1 225850936 7675405 complement(1324013..1324939) 1 NC_012440.1 identified by match to protein family HMM PF00448; GTP-binding signal recognition particle SRP54 G- domain protein 1324939 7675405 PERMA_1402 Persephonella marina EX-H1 GTP-binding signal recognition particle SRP54 G- domain protein YP_002731170.1 1324013 R 123214 CDS YP_002731171.1 225850937 7674185 complement(1325056..1325433) 1 NC_012440.1 identified by match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556; holo-ACP synthase 1325433 acpS 7674185 acpS Persephonella marina EX-H1 holo-ACP synthase YP_002731171.1 1325056 R 123214 CDS YP_002731172.1 225850938 7674635 complement(1325430..1325924) 1 NC_012440.1 identified by match to protein family HMM PF01202; shikimate kinase 1325924 aroK 7674635 aroK Persephonella marina EX-H1 shikimate kinase YP_002731172.1 1325430 R 123214 CDS YP_002731173.1 225850939 7675688 complement(1325924..1326199) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1326199 7675688 PERMA_1405 Persephonella marina EX-H1 hypothetical protein YP_002731173.1 1325924 R 123214 CDS YP_002731174.1 225850940 7675431 1326237..1326458 1 NC_012440.1 identified by match to protein family HMM PF02594; protein CPn_0497//CPj0497/CpB0517 1326458 7675431 PERMA_1406 Persephonella marina EX-H1 protein CPn_0497//CPj0497/CpB0517 YP_002731174.1 1326237 D 123214 CDS YP_002731175.1 225850941 7674683 complement(1326460..1326753) 1 NC_012440.1 hypothetical protein 1326753 7674683 PERMA_1407 Persephonella marina EX-H1 hypothetical protein YP_002731175.1 1326460 R 123214 CDS YP_002731176.1 225850942 7675274 complement(1326750..1327763) 1 NC_012440.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1327763 queA 7675274 queA Persephonella marina EX-H1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_002731176.1 1326750 R 123214 CDS YP_002731177.1 225850943 7674642 complement(1327765..1327989) 1 NC_012440.1 hypothetical protein 1327989 7674642 PERMA_1409 Persephonella marina EX-H1 hypothetical protein YP_002731177.1 1327765 R 123214 CDS YP_002731178.1 225850944 7674707 complement(1328028..1328657) 1 NC_012440.1 identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693; thiamine-phosphate pyrophosphorylase 1328657 thiE 7674707 thiE Persephonella marina EX-H1 thiamine-phosphate pyrophosphorylase YP_002731178.1 1328028 R 123214 CDS YP_002731179.1 225850945 7674891 1328770..1329138 1 NC_012440.1 identified by match to protein family HMM PF00507; NADH-quinone oxidoreductase, subunit A 1329138 nuoA 7674891 nuoA Persephonella marina EX-H1 NADH-quinone oxidoreductase, subunit A YP_002731179.1 1328770 D 123214 CDS YP_002731180.1 225850946 7676099 1329129..1329674 1 NC_012440.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1329674 7676099 PERMA_1412 Persephonella marina EX-H1 NADH dehydrogenase subunit B YP_002731180.1 1329129 D 123214 CDS YP_002731181.1 225850947 7674451 1329738..1331486 1 NC_012440.1 identified by match to protein family HMM PF00329; match to protein family HMM PF00346; match to protein family HMM TIGR01961; match to protein family HMM TIGR01962; NADH-quinone oxidoreductase subunit c/d (nadhdehydrogenase i subunit c/d) (ndh-1 subunit c/d) (Nuo3/nuo4) 1331486 7674451 PERMA_1413 Persephonella marina EX-H1 NADH-quinone oxidoreductase subunit c/d (nadhdehydrogenase i subunit c/d) (ndh-1 subunit c/d) (Nuo3/nuo4) YP_002731181.1 1329738 D 123214 CDS YP_002731182.1 225850948 7675453 1331565..1332575 1 NC_012440.1 identified by match to protein family HMM PF00146; NADH-quinone oxidoreductase subunit h (nadhdehydrogenase i subunit h) (ndh-1 subunit h) 1332575 7675453 PERMA_1414 Persephonella marina EX-H1 NADH-quinone oxidoreductase subunit h (nadhdehydrogenase i subunit h) (ndh-1 subunit h) YP_002731182.1 1331565 D 123214 CDS YP_002731183.1 225850949 7674813 1332577..1333179 1 NC_012440.1 identified by match to protein family HMM PF00037; NADH-quinone oxidoreductase subunit i 1333179 7674813 PERMA_1415 Persephonella marina EX-H1 NADH-quinone oxidoreductase subunit i YP_002731183.1 1332577 D 123214 CDS YP_002731184.1 225850950 7675491 1333170..1333700 1 NC_012440.1 identified by match to protein family HMM PF00499; NADH-quinone oxidoreductase subunit j (nadhdehydrogenase i subunit j) (ndh-1 subunit j) 1333700 7675491 PERMA_1416 Persephonella marina EX-H1 NADH-quinone oxidoreductase subunit j (nadhdehydrogenase i subunit j) (ndh-1 subunit j) YP_002731184.1 1333170 D 123214 CDS YP_002731185.1 225850951 7674684 1333700..1334002 1 NC_012440.1 identified by match to protein family HMM PF00420; NADH-quinone oxidoreductase subunit k (nadhdehydrogenase i subunit k) (ndh-1 subunit k) 1334002 7674684 PERMA_1417 Persephonella marina EX-H1 NADH-quinone oxidoreductase subunit k (nadhdehydrogenase i subunit k) (ndh-1 subunit k) YP_002731185.1 1333700 D 123214 CDS YP_002731186.1 225850952 7675141 1334016..1335962 1 NC_012440.1 identified by match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974; NADH-quinone oxidoreductase, l subunit 1335962 nuoL 7675141 nuoL Persephonella marina EX-H1 NADH-quinone oxidoreductase, l subunit YP_002731186.1 1334016 D 123214 CDS YP_002731187.1 225850953 7676094 1335974..1337482 1 NC_012440.1 identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972; NADH-quinone oxidoreductase subunit m (nadhdehydrogenase i subunit m) (ndh-1 subunit m) 1337482 7676094 PERMA_1419 Persephonella marina EX-H1 NADH-quinone oxidoreductase subunit m (nadhdehydrogenase i subunit m) (ndh-1 subunit m) YP_002731187.1 1335974 D 123214 CDS YP_002731188.1 225850954 7675937 1337486..1338955 1 NC_012440.1 identified by match to protein family HMM PF00361; match to protein family HMM TIGR01770; NADH-quinone oxidoreductase, n subunit 1338955 nuoN 7675937 nuoN Persephonella marina EX-H1 NADH-quinone oxidoreductase, n subunit YP_002731188.1 1337486 D 123214 CDS YP_002731189.1 225850955 7676196 1338956..1339576 1 NC_012440.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 1339576 gmk 7676196 gmk Persephonella marina EX-H1 guanylate kinase YP_002731189.1 1338956 D 123214 CDS YP_002731190.1 225850956 7675583 1339569..1339910 1 NC_012440.1 identified by match to protein family HMM PF04892; VanZ like family 1339910 7675583 PERMA_1422 Persephonella marina EX-H1 VanZ like family YP_002731190.1 1339569 D 123214 CDS YP_002731191.1 225850957 7674719 1339950..1340156 1 NC_012440.1 identified by match to protein family HMM TIGR00690; DNA-directed RNA polymerase, omegsubunit A 1340156 rpoZ 7674719 rpoZ Persephonella marina EX-H1 DNA-directed RNA polymerase, omegsubunit A YP_002731191.1 1339950 D 123214 CDS YP_002731192.1 225850958 7674888 1340165..1341322 1 NC_012440.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; histidine kinase 1341322 7674888 PERMA_1424 Persephonella marina EX-H1 histidine kinase YP_002731192.1 1340165 D 123214 CDS YP_002731193.1 225850959 7674728 1341319..1342689 1 NC_012440.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; type 4 fimbriae expression regulatory protein PilR 1342689 7674728 PERMA_1425 Persephonella marina EX-H1 type 4 fimbriae expression regulatory protein PilR YP_002731193.1 1341319 D 123214 CDS YP_002731194.1 225850960 7675789 1342753..1344492 1 NC_012440.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1344492 lysS 7675789 lysS Persephonella marina EX-H1 lysyl-tRNA synthetase YP_002731194.1 1342753 D 123214 CDS YP_002731195.1 225850961 7674344 1344558..1345505 1 NC_012440.1 identified by match to protein family HMM PF03747; ADP-ribosylglycohydrolase 1345505 7674344 PERMA_1427 Persephonella marina EX-H1 ADP-ribosylglycohydrolase YP_002731195.1 1344558 D 123214 CDS YP_002731196.1 225850962 7674518 1345523..1345762 1 NC_012440.1 identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383; RNA chaperone Hfq 1345762 hfq_2 7674518 hfq_2 Persephonella marina EX-H1 RNA chaperone Hfq YP_002731196.1 1345523 D 123214 CDS YP_002731197.1 225850963 7675411 1345861..1346895 1 NC_012440.1 identified by match to protein family HMM PF00034; match to protein family HMM PF03150; cytochrome c551 peroxidase (cytochrome cperoxidase) (CCP) 1346895 7675411 PERMA_1429 Persephonella marina EX-H1 cytochrome c551 peroxidase (cytochrome cperoxidase) (CCP) YP_002731197.1 1345861 D 123214 CDS YP_002731198.1 225850964 7675043 1346972..1347412 1 NC_012440.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein 1347412 7675043 PERMA_1430 Persephonella marina EX-H1 hypothetical protein YP_002731198.1 1346972 D 123214 CDS YP_002731199.1 225850965 7675634 complement(1347436..1347675) 1 NC_012440.1 hypothetical protein 1347675 7675634 PERMA_1431 Persephonella marina EX-H1 hypothetical protein YP_002731199.1 1347436 R 123214 CDS YP_002731200.1 225850966 7676185 complement(1347711..1347956) 1 NC_012440.1 identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; ribosomal protein S16 1347956 rpsP 7676185 rpsP Persephonella marina EX-H1 ribosomal protein S16 YP_002731200.1 1347711 R 123214 CDS YP_002731201.1 225850967 7674999 complement(1347977..1349305) 1 NC_012440.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 1349305 ffh 7674999 ffh Persephonella marina EX-H1 signal recognition particle protein YP_002731201.1 1347977 R 123214 CDS YP_002731202.1 225850968 7675326 1349551..1351104 1 NC_012440.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM PF08479; outer membrane protein, OMP85 family 1351104 7675326 PERMA_1434 Persephonella marina EX-H1 outer membrane protein, OMP85 family YP_002731202.1 1349551 D 123214 CDS YP_002731203.1 225850969 7675228 1351118..1351837 1 NC_012440.1 identified by match to protein family HMM PF07277; SapC family protein 1351837 7675228 PERMA_1435 Persephonella marina EX-H1 SapC family protein YP_002731203.1 1351118 D 123214 CDS YP_002731204.1 225850970 7674327 1351868..1369297 1 NC_012440.1 identified by match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01901; hemagglutination activity domain protein 1369297 7674327 PERMA_1436 Persephonella marina EX-H1 hemagglutination activity domain protein YP_002731204.1 1351868 D 123214 CDS YP_002731205.1 225850971 7675781 1369377..1370663 1 NC_012440.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; processing protease 1370663 7675781 PERMA_1437 Persephonella marina EX-H1 processing protease YP_002731205.1 1369377 D 123214 CDS YP_002731206.1 225850972 7674262 1370674..1371507 1 NC_012440.1 identified by match to protein family HMM PF01564; match to protein family HMM TIGR00417; spermidine synthase 1371507 speE 7674262 speE Persephonella marina EX-H1 spermidine synthase YP_002731206.1 1370674 D 123214 CDS YP_002731207.1 225850973 7675466 1371522..1372598 1 NC_012440.1 identified by match to protein family HMM PF01861; hypothetical protein 1372598 7675466 PERMA_1439 Persephonella marina EX-H1 hypothetical protein YP_002731207.1 1371522 D 123214 CDS YP_002731208.1 225850974 7674353 1372764..1373972 1 NC_012440.1 ATPase AAA 1373972 7674353 PERMA_1440 Persephonella marina EX-H1 ATPase AAA YP_002731208.1 1372764 D 123214 CDS YP_002731209.1 225850975 7675087 1374065..1376656 1 NC_012440.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 1376656 acnB 7675087 acnB Persephonella marina EX-H1 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_002731209.1 1374065 D 123214 CDS YP_002731210.1 225850976 7675982 1376736..1377950 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1377950 7675982 PERMA_1442 Persephonella marina EX-H1 hypothetical protein YP_002731210.1 1376736 D 123214 CDS YP_002731211.1 225850977 7675678 1378028..1378759 1 NC_012440.1 identified by match to protein family HMM PF00194; carbonic anhydrase (Carbonate dehydratase) 1378759 7675678 PERMA_1443 Persephonella marina EX-H1 carbonic anhydrase (Carbonate dehydratase) YP_002731211.1 1378028 D 123214 CDS YP_002731212.1 225850978 7674433 1378888..1382085 1 NC_012440.1 identified by match to protein family HMM PF01578; cytochrome c biogenesis protein, CcmF/CycK/CcsA family 1382085 7674433 PERMA_1444 Persephonella marina EX-H1 cytochrome c biogenesis protein, CcmF/CycK/CcsA family YP_002731212.1 1378888 D 123214 CDS YP_002731213.1 225850979 7675871 1382342..1383067 1 NC_012440.1 cytochrome c family protein 1383067 7675871 PERMA_1445 Persephonella marina EX-H1 cytochrome c family protein YP_002731213.1 1382342 D 123214 CDS YP_002731214.1 225850980 7674644 complement(1383113..1383439) 1 NC_012440.1 cytochrome c552 1383439 7674644 PERMA_1446 Persephonella marina EX-H1 cytochrome c552 YP_002731214.1 1383113 R 123214 CDS YP_002731215.1 225850981 7675484 complement(1383436..1383939) 1 NC_012440.1 hypothetical protein 1383939 7675484 PERMA_1447 Persephonella marina EX-H1 hypothetical protein YP_002731215.1 1383436 R 123214 CDS YP_002731216.1 225850982 7675263 complement(1383923..1385989) 1 NC_012440.1 cytochrome c family protein 1385989 7675263 PERMA_1448 Persephonella marina EX-H1 cytochrome c family protein YP_002731216.1 1383923 R 123214 CDS YP_002731217.1 225850983 7675754 complement(1385992..1386978) 1 NC_012440.1 identified by match to protein family HMM PF01436; match to protein family HMM PF08450; NHL repeat containing protein 1386978 7675754 PERMA_1449 Persephonella marina EX-H1 NHL repeat containing protein YP_002731217.1 1385992 R 123214 CDS YP_002731218.1 225850984 7674878 complement(1386990..1389584) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1389584 7674878 PERMA_1450 Persephonella marina EX-H1 hypothetical protein YP_002731218.1 1386990 R 123214 CDS YP_002731219.1 225850985 7674698 complement(1389595..1390572) 1 NC_012440.1 identified by match to protein family HMM PF00639; ppic-type ppiase domain protein 1390572 7674698 PERMA_1451 Persephonella marina EX-H1 ppic-type ppiase domain protein YP_002731219.1 1389595 R 123214 CDS YP_002731220.1 225850986 7674415 complement(1390572..1391579) 1 NC_012440.1 identified by match to protein family HMM PF01436; NHL repeat domain protein 1391579 7674415 PERMA_1452 Persephonella marina EX-H1 NHL repeat domain protein YP_002731220.1 1390572 R 123214 CDS YP_002731221.1 225850987 7675895 complement(1391569..1392156) 1 NC_012440.1 cytochrome c family protein 1392156 7675895 PERMA_1453 Persephonella marina EX-H1 cytochrome c family protein YP_002731221.1 1391569 R 123214 CDS YP_002731222.1 225850988 7674613 complement(1392165..1393298) 1 NC_012440.1 identified by match to protein family HMM PF01436; NHL repeat protein 1393298 7674613 PERMA_1454 Persephonella marina EX-H1 NHL repeat protein YP_002731222.1 1392165 R 123214 CDS YP_002731223.1 225850989 7674511 complement(1393283..1394038) 1 NC_012440.1 cytochrome c family protein 1394038 7674511 PERMA_1455 Persephonella marina EX-H1 cytochrome c family protein YP_002731223.1 1393283 R 123214 CDS YP_002731224.1 225850990 7674703 1394329..1395492 1 NC_012440.1 identified by match to protein family HMM PF09699; match to protein family HMM TIGR01905; cytochrome c family protein 1395492 7674703 PERMA_1456 Persephonella marina EX-H1 cytochrome c family protein YP_002731224.1 1394329 D 123214 CDS YP_002731225.1 225850991 7675667 1395542..1396282 1 NC_012440.1 identified by match to protein family HMM PF03264; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 1396282 7675667 PERMA_1457 Persephonella marina EX-H1 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha YP_002731225.1 1395542 D 123214 CDS YP_002731226.1 225850992 7675091 1396294..1397898 1 NC_012440.1 identified by match to protein family HMM PF09699; match to protein family HMM TIGR01905; cytochrome c family protein 1397898 7675091 PERMA_1458 Persephonella marina EX-H1 cytochrome c family protein YP_002731226.1 1396294 D 123214 CDS YP_002731227.1 225850993 7674224 1397918..1399030 1 NC_012440.1 identified by match to protein family HMM PF09699; match to protein family HMM TIGR01905; cytochrome C family protein 1399030 7674224 PERMA_1459 Persephonella marina EX-H1 cytochrome C family protein YP_002731227.1 1397918 D 123214 CDS YP_002731228.1 225850994 7675008 1399047..1400027 1 NC_012440.1 identified by match to protein family HMM PF09699; match to protein family HMM TIGR01905; cytochrome C family protein 1400027 7675008 PERMA_1460 Persephonella marina EX-H1 cytochrome C family protein YP_002731228.1 1399047 D 123214 CDS YP_002731229.1 225850995 7675859 1400226..1401650 1 NC_012440.1 identified by match to protein family HMM PF07992; sulfide-quinone reductase 1401650 7675859 PERMA_1461 Persephonella marina EX-H1 sulfide-quinone reductase YP_002731229.1 1400226 D 123214 CDS YP_002731230.1 225850996 7675730 1401672..1401791 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1401791 7675730 PERMA_1462 Persephonella marina EX-H1 hypothetical protein YP_002731230.1 1401672 D 123214 CDS YP_002731231.1 225850997 7675746 complement(1401819..1402091) 1 NC_012440.1 identified by match to protein family HMM PF02617; ATP-dependent Clp protease adaptor protein ClpS 1402091 clpS 7675746 clpS Persephonella marina EX-H1 ATP-dependent Clp protease adaptor protein ClpS YP_002731231.1 1401819 R 123214 CDS YP_002731232.1 225850998 7675080 complement(1402096..1402719) 1 NC_012440.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482; nicotinate-nucleotide adenylyltransferase 1402719 nadD 7675080 nadD Persephonella marina EX-H1 nicotinate-nucleotide adenylyltransferase YP_002731232.1 1402096 R 123214 CDS YP_002731233.1 225850999 7676170 complement(1402724..1404133) 1 NC_012440.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; protease do 1404133 7676170 PERMA_1465 Persephonella marina EX-H1 protease do YP_002731233.1 1402724 R 123214 CDS YP_002731234.1 225851000 7674477 1404203..1404982 1 NC_012440.1 hypothetical protein 1404982 7674477 PERMA_1466 Persephonella marina EX-H1 hypothetical protein YP_002731234.1 1404203 D 123214 CDS YP_002731235.1 225851001 7675849 1404979..1405830 1 NC_012440.1 identified by match to protein family HMM PF01040; match to protein family HMM TIGR01475; 4-hydroxybenzoate polyprenyltransferase 1405830 7675849 PERMA_1467 Persephonella marina EX-H1 4-hydroxybenzoate polyprenyltransferase YP_002731235.1 1404979 D 123214 CDS YP_002731236.1 225851002 7674366 1405879..1406334 1 NC_012440.1 identified by match to protein family HMM PF07977; match to protein family HMM TIGR01750; 3-hydroxyacyl-ACP dehydratase 1406334 fabZ 7674366 fabZ Persephonella marina EX-H1 3-hydroxyacyl-ACP dehydratase YP_002731236.1 1405879 D 123214 CDS YP_002731237.1 225851003 7674896 complement(1406335..1407024) 1 NC_012440.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 1407024 radC 7674896 radC Persephonella marina EX-H1 DNA repair protein RadC YP_002731237.1 1406335 R 123214 CDS YP_002731238.1 225851004 7674848 1407096..1407662 1 NC_012440.1 identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase B 1407662 7674848 PERMA_1471 Persephonella marina EX-H1 peptidyl-prolyl cis-trans isomerase B YP_002731238.1 1407096 D 123214 CDS YP_002731239.1 225851005 7674197 complement(1407659..1409233) 1 NC_012440.1 identified by match to protein family HMM PF02538; 5-oxoprolinase (5-oxo-L-prolinase) (Pyroglutamase) (5-OPase) 1409233 7674197 PERMA_1470 Persephonella marina EX-H1 5-oxoprolinase (5-oxo-L-prolinase) (Pyroglutamase) (5-OPase) YP_002731239.1 1407659 R 123214 CDS YP_002731240.1 225851006 7675898 complement(1409220..1411193) 1 NC_012440.1 identified by match to protein family HMM PF01968; match to protein family HMM PF05378; hydantoin utilization protein A (ORF2) 1411193 7675898 PERMA_1472 Persephonella marina EX-H1 hydantoin utilization protein A (ORF2) YP_002731240.1 1409220 R 123214 CDS YP_002731241.1 225851007 7674225 complement(1411199..1411681) 1 NC_012440.1 hypothetical protein 1411681 7674225 PERMA_1473 Persephonella marina EX-H1 hypothetical protein YP_002731241.1 1411199 R 123214 CDS YP_002731242.1 225851008 7675063 1411770..1413233 1 NC_012440.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1413233 cysS 7675063 cysS Persephonella marina EX-H1 cysteinyl-tRNA synthetase YP_002731242.1 1411770 D 123214 CDS YP_002731243.1 225851009 7674709 1413235..1413906 1 NC_012440.1 identified by match to protein family HMM PF01209; match to protein family HMM PF02390; match to protein family HMM PF08241; match to protein family HMM PF08242; methyltransferase, UbiE/COQ5 family 1413906 7674709 PERMA_1475 Persephonella marina EX-H1 methyltransferase, UbiE/COQ5 family YP_002731243.1 1413235 D 123214 CDS YP_002731244.1 225851010 7675807 1413957..1414952 1 NC_012440.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-aribino-heptulonate 7-phosphate; 3-dehydroquinate synthase 1414952 7675807 PERMA_1476 Persephonella marina EX-H1 3-dehydroquinate synthase YP_002731244.1 1413957 D 123214 CDS YP_002731245.1 225851011 7676153 1414954..1416498 1 NC_012440.1 identified by match to protein family HMM PF02470; mce related protein 1416498 7676153 PERMA_1477 Persephonella marina EX-H1 mce related protein YP_002731245.1 1414954 D 123214 CDS YP_002731246.1 225851012 7675600 1416515..1417198 1 NC_012440.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325; transcriptional regulator 1417198 7675600 PERMA_1478 Persephonella marina EX-H1 transcriptional regulator YP_002731246.1 1416515 D 123214 CDS YP_002731247.1 225851013 7675303 1417316..1418689 1 NC_012440.1 identified by match to protein family HMM PF02321; outer membrane efflux protein 1418689 7675303 PERMA_1479 Persephonella marina EX-H1 outer membrane efflux protein YP_002731247.1 1417316 D 123214 CDS YP_002731248.1 225851014 7675238 1418689..1419855 1 NC_012440.1 identified by match to protein family HMM TIGR01730; acriflavin resistance protein AcrE 1419855 7675238 PERMA_1480 Persephonella marina EX-H1 acriflavin resistance protein AcrE YP_002731248.1 1418689 D 123214 CDS YP_002731249.1 225851015 7674676 1419873..1423130 1 NC_012440.1 identified by match to protein family HMM PF00873; cation efflux system 1423130 7674676 PERMA_1481 Persephonella marina EX-H1 cation efflux system YP_002731249.1 1419873 D 123214 CDS YP_002731250.1 225851016 7675443 complement(1423164..1424162) 1 NC_012440.1 identified by match to protein family HMM PF01210; match to protein family HMM PF03721; match to protein family HMM PF03807; match to protein family HMM PF07479; glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) (NAD(P)H-dependentdihydroxyacetone-phosphate reductase) 1424162 7675443 PERMA_1482 Persephonella marina EX-H1 glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) (NAD(P)H-dependentdihydroxyacetone-phosphate reductase) YP_002731250.1 1423164 R 123214 CDS YP_002731251.1 225851017 7674553 1424217..1425011 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1425011 7674553 PERMA_1483 Persephonella marina EX-H1 hypothetical protein YP_002731251.1 1424217 D 123214 CDS YP_002731252.1 225851018 7675633 1425011..1426213 1 NC_012440.1 identified by match to protein family HMM PF02687; ABC transporter permease 1426213 7675633 PERMA_1484 Persephonella marina EX-H1 ABC transporter permease YP_002731252.1 1425011 D 123214 CDS YP_002731253.1 225851019 7676042 1426216..1427439 1 NC_012440.1 identified by match to protein family HMM PF02687; macrolide ABC transporter ATP-binding protein/permease 1427439 7676042 PERMA_1485 Persephonella marina EX-H1 macrolide ABC transporter ATP-binding protein/permease YP_002731253.1 1426216 D 123214 CDS YP_002731254.1 225851020 7675549 1427498..1429150 1 NC_012440.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; Methyl-accepting chemotaxis protein signaling domain protein 1429150 7675549 PERMA_1487 Persephonella marina EX-H1 Methyl-accepting chemotaxis protein signaling domain protein YP_002731254.1 1427498 D 123214 CDS YP_002731255.1 225851021 7675293 complement(1429128..1430585) 1 NC_012440.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 1430585 gatA 7675293 gatA Persephonella marina EX-H1 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_002731255.1 1429128 R 123214 CDS YP_002731256.1 225851022 7675029 complement(1430597..1431040) 1 NC_012440.1 transcriptional regulator, TraR/DksA family 1431040 7675029 PERMA_1488 Persephonella marina EX-H1 transcriptional regulator, TraR/DksA family YP_002731256.1 1430597 R 123214 CDS YP_002731257.1 225851023 7675207 1431174..1432352 1 NC_012440.1 identified by match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM TIGR01142; phosphoribosylglycinamide formyltransferase 2 1432352 purT 7675207 purT Persephonella marina EX-H1 phosphoribosylglycinamide formyltransferase 2 YP_002731257.1 1431174 D 123214 CDS YP_002731258.1 225851024 7674423 1432361..1432828 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1432828 7674423 PERMA_1490 Persephonella marina EX-H1 hypothetical protein YP_002731258.1 1432361 D 123214 CDS YP_002731259.1 225851025 7674288 1432822..1434150 1 NC_012440.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; transcriptional regulatory protein ZraR 1434150 7674288 PERMA_1491 Persephonella marina EX-H1 transcriptional regulatory protein ZraR YP_002731259.1 1432822 D 123214 CDS YP_002731260.1 225851026 7674545 1434307..1435002 1 NC_012440.1 lipoprotein 1435002 7674545 PERMA_1492 Persephonella marina EX-H1 lipoprotein YP_002731260.1 1434307 D 123214 CDS YP_002731261.1 225851027 7675475 1435035..1436354 1 NC_012440.1 calcium-binding protein 1436354 7675475 PERMA_1493 Persephonella marina EX-H1 calcium-binding protein YP_002731261.1 1435035 D 123214 CDS YP_002731262.1 225851028 7674633 1436412..1437476 1 NC_012440.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01966; response regulator receiver modulated metal dependent phosphohydrolase 1437476 7674633 PERMA_1494 Persephonella marina EX-H1 response regulator receiver modulated metal dependent phosphohydrolase YP_002731262.1 1436412 D 123214 CDS YP_002731263.1 225851029 7674393 1437473..1438474 1 NC_012440.1 hypothetical protein 1438474 7674393 PERMA_1495 Persephonella marina EX-H1 hypothetical protein YP_002731263.1 1437473 D 123214 CDS YP_002731264.1 225851030 7674332 1438482..1438907 1 NC_012440.1 hypothetical protein 1438907 7674332 PERMA_1496 Persephonella marina EX-H1 hypothetical protein YP_002731264.1 1438482 D 123214 CDS YP_002731265.1 225851031 7675812 1438904..1439248 1 NC_012440.1 identified by match to protein family HMM PF00072; cell division response regulator DivK 1439248 7675812 PERMA_1497 Persephonella marina EX-H1 cell division response regulator DivK YP_002731265.1 1438904 D 123214 CDS YP_002731266.1 225851032 7674497 1439245..1441245 1 NC_012440.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; histidine kinase 1441245 7674497 PERMA_1498 Persephonella marina EX-H1 histidine kinase YP_002731266.1 1439245 D 123214 CDS YP_002731267.1 225851033 7675930 complement(1441249..1441365) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1441365 7675930 PERMA_1499 Persephonella marina EX-H1 hypothetical protein YP_002731267.1 1441249 R 123214 CDS YP_002731268.1 225851034 7675954 complement(1441483..1443030) 1 NC_012440.1 identified by match to protein family HMM PF01808; match to protein family HMM PF02142; match to protein family HMM TIGR00355; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 1443030 purH 7675954 purH Persephonella marina EX-H1 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_002731268.1 1441483 R 123214 CDS YP_002731269.1 225851035 7674900 1443139..1444110 1 NC_012440.1 identified by match to protein family HMM PF01743; poly A polymerase 1444110 7674900 PERMA_1501 Persephonella marina EX-H1 poly A polymerase YP_002731269.1 1443139 D 123214 CDS YP_002731270.1 225851036 7674379 1444617..1444748 1 NC_012440.1 poly A polymerase 1444748 7674379 PERMA_1502 Persephonella marina EX-H1 poly A polymerase YP_002731270.1 1444617 D 123214 CDS YP_002731271.1 225851037 7676095 complement(1444749..1445810) 1 NC_012440.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 1445810 mnmA 7676095 mnmA Persephonella marina EX-H1 tRNA-specific 2-thiouridylase MnmA YP_002731271.1 1444749 R 123214 CDS YP_002731272.1 225851038 7674227 complement(1445811..1447013) 1 NC_012440.1 identified by match to protein family HMM PF00482; type IV pilus biogenesis protein PilC 1447013 pilC 7674227 pilC Persephonella marina EX-H1 type IV pilus biogenesis protein PilC YP_002731272.1 1445811 R 123214 CDS YP_002731273.1 225851039 7675480 complement(1447027..1448106) 1 NC_012440.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching mobility protein 1448106 7675480 PERMA_1505 Persephonella marina EX-H1 twitching mobility protein YP_002731273.1 1447027 R 123214 CDS YP_002731274.1 225851040 7674607 complement(1448124..1449857) 1 NC_012440.1 identified by match to protein family HMM PF00437; match to protein family HMM PF05157; type IV pilus assembly protein TapB 1449857 7674607 PERMA_1506 Persephonella marina EX-H1 type IV pilus assembly protein TapB YP_002731274.1 1448124 R 123214 CDS YP_002731275.1 225851041 7675644 1449959..1451326 1 NC_012440.1 identified by match to protein family HMM PF00289; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443; match to protein family HMM TIGR00514; acetyl-CoA carboxylase, biotin carboxylase subunit 1451326 accC_1 7675644 accC_1 Persephonella marina EX-H1 acetyl-CoA carboxylase, biotin carboxylase subunit YP_002731275.1 1449959 D 123214 CDS YP_002731276.1 225851042 7674382 1451323..1451961 1 NC_012440.1 identified by match to protein family HMM PF00753; beta-lactamase domain protein 1451961 7674382 PERMA_1508 Persephonella marina EX-H1 beta-lactamase domain protein YP_002731276.1 1451323 D 123214 CDS YP_002731277.1 225851043 7676075 1451955..1452812 1 NC_012440.1 identified by match to protein family HMM PF01261; match to protein family HMM TIGR00587; endonuclease 4 (Endonuclease IV)(Endodeoxyribonuclease IV) 1452812 7676075 PERMA_1509 Persephonella marina EX-H1 endonuclease 4 (Endonuclease IV)(Endodeoxyribonuclease IV) YP_002731277.1 1451955 D 123214 CDS YP_002731278.1 225851044 7675636 1452913..1453875 1 NC_012440.1 identified by match to protein family HMM PF00348; octaprenyl-diphosphate synthase 1453875 7675636 PERMA_1511 Persephonella marina EX-H1 octaprenyl-diphosphate synthase YP_002731278.1 1452913 D 123214 CDS YP_002731279.1 225851045 7675984 1453875..1454297 1 NC_012440.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 1454297 panD 7675984 panD Persephonella marina EX-H1 aspartate alpha-decarboxylase YP_002731279.1 1453875 D 123214 CDS YP_002731280.1 225851046 7675122 1454300..1455475 1 NC_012440.1 identified by match to protein family HMM PF01464; match to protein family HMM PF01476; glycoside hydrolase family 23 1455475 7675122 PERMA_1513 Persephonella marina EX-H1 glycoside hydrolase family 23 YP_002731280.1 1454300 D 123214 CDS YP_002731281.1 225851047 7674890 1455476..1456534 1 NC_012440.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1456534 ispG 7674890 ispG Persephonella marina EX-H1 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_002731281.1 1455476 D 123214 CDS YP_002731282.1 225851048 7675963 1456535..1456978 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1456978 7675963 PERMA_1515 Persephonella marina EX-H1 hypothetical protein YP_002731282.1 1456535 D 123214 CDS YP_002731283.1 225851049 7674204 1456965..1457288 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1457288 7674204 PERMA_1516 Persephonella marina EX-H1 hypothetical protein YP_002731283.1 1456965 D 123214 CDS YP_002731284.1 225851050 7676106 1457289..1458188 1 NC_012440.1 identified by match to protein family HMM PF00696; match to protein family HMM TIGR00761; acetylglutamate kinase 1458188 argB 7676106 argB Persephonella marina EX-H1 acetylglutamate kinase YP_002731284.1 1457289 D 123214 CDS YP_002731285.1 225851051 7674847 complement(1458189..1460150) 1 NC_012440.1 identified by match to protein family HMM TIGR00376; DNA helicase 1460150 7674847 PERMA_1518 Persephonella marina EX-H1 DNA helicase YP_002731285.1 1458189 R 123214 CDS YP_002731286.1 225851052 7674700 complement(1460160..1461053) 1 NC_012440.1 hypothetical protein 1461053 7674700 PERMA_1519 Persephonella marina EX-H1 hypothetical protein YP_002731286.1 1460160 R 123214 CDS YP_002731287.1 225851053 7674202 1461133..1461318 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1461318 7674202 PERMA_1520 Persephonella marina EX-H1 hypothetical protein YP_002731287.1 1461133 D 123214 CDS YP_002731288.1 225851054 7675197 complement(1461321..1464134) 1 NC_012440.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 1464134 secA 7675197 secA Persephonella marina EX-H1 preprotein translocase subunit SecA YP_002731288.1 1461321 R 123214 CDS YP_002731289.1 225851055 7674367 complement(1464210..1464707) 1 NC_012440.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1464707 lspA 7674367 lspA Persephonella marina EX-H1 lipoprotein signal peptidase YP_002731289.1 1464210 R 123214 CDS YP_002731290.1 225851056 7675244 complement(1464709..1465137) 1 NC_012440.1 identified by match to protein family HMM PF01258; DnaK suppressor protein 1465137 7675244 PERMA_1523 Persephonella marina EX-H1 DnaK suppressor protein YP_002731290.1 1464709 R 123214 CDS YP_002731291.1 225851057 7675550 1465279..1465560 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1465560 7675550 PERMA_1524 Persephonella marina EX-H1 hypothetical protein YP_002731291.1 1465279 D 123214 CDS YP_002731292.1 225851058 7675093 1465561..1465755 1 NC_012440.1 hypothetical protein 1465755 7675093 PERMA_1525 Persephonella marina EX-H1 hypothetical protein YP_002731292.1 1465561 D 123214 CDS YP_002731293.1 225851059 7675740 1465761..1467038 1 NC_012440.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; general substrate transporter 1467038 7675740 PERMA_1526 Persephonella marina EX-H1 general substrate transporter YP_002731293.1 1465761 D 123214 CDS YP_002731294.1 225851060 7676101 1467038..1467403 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1467403 7676101 PERMA_1527 Persephonella marina EX-H1 hypothetical protein YP_002731294.1 1467038 D 123214 CDS YP_002731295.1 225851061 7675152 1467470..1468597 1 NC_012440.1 identified by match to protein family HMM PF00285; match to protein family HMM TIGR01800; citrate synthase 2 (Citrate synthase II) 1468597 7675152 PERMA_1528 Persephonella marina EX-H1 citrate synthase 2 (Citrate synthase II) YP_002731295.1 1467470 D 123214 CDS YP_002731296.1 225851062 7674405 1468782..1470845 1 NC_012440.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 1470845 7674405 PERMA_1529 Persephonella marina EX-H1 copper-translocating P-type ATPase YP_002731296.1 1468782 D 123214 CDS YP_002731297.1 225851063 7675270 1470922..1471695 1 NC_012440.1 identified by match to protein family HMM PF02621; hypothetical protein 1471695 7675270 PERMA_1530 Persephonella marina EX-H1 hypothetical protein YP_002731297.1 1470922 D 123214 CDS YP_002731298.1 225851064 7674318 1471698..1472303 1 NC_012440.1 identified by match to protein family HMM PF01557; fumarylacetoacetate hydrolase 1472303 7674318 PERMA_1531 Persephonella marina EX-H1 fumarylacetoacetate hydrolase YP_002731298.1 1471698 D 123214 CDS YP_002731299.1 225851065 7675214 1472288..1473133 1 NC_012440.1 identified by match to protein family HMM PF05430; hypothetical protein 1473133 7675214 PERMA_1532 Persephonella marina EX-H1 hypothetical protein YP_002731299.1 1472288 D 123214 CDS YP_002731300.1 225851066 7674858 1473145..1473327 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1473327 7674858 PERMA_1533 Persephonella marina EX-H1 hypothetical protein YP_002731300.1 1473145 D 123214 CDS YP_002731301.1 225851067 7674689 complement(1473336..1474565) 1 NC_012440.1 identified by match to protein family HMM PF00136; DNA polymerase 2 (DNA polymerase II) (DNA polymerase B2) 1474565 7674689 PERMA_1534 Persephonella marina EX-H1 DNA polymerase 2 (DNA polymerase II) (DNA polymerase B2) YP_002731301.1 1473336 R 123214 CDS YP_002731302.1 225851068 7675139 complement(1474871..1475509) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1475509 7675139 PERMA_1535 Persephonella marina EX-H1 hypothetical protein YP_002731302.1 1474871 R 123214 CDS YP_002731303.1 225851069 7674745 complement(1475481..1475738) 1 NC_012440.1 hypothetical protein 1475738 7674745 PERMA_1536 Persephonella marina EX-H1 hypothetical protein YP_002731303.1 1475481 R 123214 CDS YP_002731304.1 225851070 7674233 complement(1475747..1476208) 1 NC_012440.1 hypothetical protein 1476208 7674233 PERMA_1537 Persephonella marina EX-H1 hypothetical protein YP_002731304.1 1475747 R 123214 CDS YP_002731305.1 225851071 7675778 complement(1476211..1476831) 1 NC_012440.1 identified by match to protein family HMM PF00717; match to protein family HMM PF01726; match to protein family HMM TIGR00498; repressor LexA 1476831 lexA 7675778 lexA Persephonella marina EX-H1 repressor LexA YP_002731305.1 1476211 R 123214 CDS YP_002731306.1 225851072 7674523 1476950..1478044 1 NC_012440.1 identified by match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663; DNA polymerase III, betsubunit A 1478044 dnaN 7674523 dnaN Persephonella marina EX-H1 DNA polymerase III, betsubunit A YP_002731306.1 1476950 D 123214 CDS YP_002731307.1 225851073 7674304 1478093..1480510 1 NC_012440.1 identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059; DNA gyrase, B subunit 1480510 gyrB 7674304 gyrB Persephonella marina EX-H1 DNA gyrase, B subunit YP_002731307.1 1478093 D 123214 CDS YP_002731308.1 225851074 7675449 complement(1480523..1480879) 1 NC_012440.1 identified by match to protein family HMM PF00034; cytochrome c 1480879 7675449 PERMA_1541 Persephonella marina EX-H1 cytochrome c YP_002731308.1 1480523 R 123214 CDS YP_002731309.1 225851075 7674784 1481043..1483559 1 NC_012440.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; signal transduction response regulator 1483559 7674784 PERMA_1542 Persephonella marina EX-H1 signal transduction response regulator YP_002731309.1 1481043 D 123214 CDS YP_002731310.1 225851076 7674527 complement(1486608..1487774) 1 NC_012440.1 identified by match to protein family HMM TIGR01730; efflux transporter, RND family, MFP subunit 1487774 7674527 PERMA_1543 Persephonella marina EX-H1 efflux transporter, RND family, MFP subunit YP_002731310.1 1486608 R 123214 CDS YP_002731311.1 225851077 7676050 complement(1487776..1489023) 1 NC_012440.1 identified by match to protein family HMM PF02321; outer membrane efflux protein 1489023 7676050 PERMA_1544 Persephonella marina EX-H1 outer membrane efflux protein YP_002731311.1 1487776 R 123214 CDS YP_002731312.1 225851078 7675845 complement(1489255..1490409) 1 NC_012440.1 identified by match to protein family HMM PF00425; para-aminobenzoate synthase component 1 (Para-aminobenzoate synthase component I) (ADC synthase) 1490409 7675845 PERMA_1545 Persephonella marina EX-H1 para-aminobenzoate synthase component 1 (Para-aminobenzoate synthase component I) (ADC synthase) YP_002731312.1 1489255 R 123214 CDS YP_002731313.1 225851079 7676181 1490476..1491246 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1491246 7676181 PERMA_1546 Persephonella marina EX-H1 hypothetical protein YP_002731313.1 1490476 D 123214 CDS YP_002731314.1 225851080 7675178 1491489..1491809 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1491809 7675178 PERMA_1547 Persephonella marina EX-H1 hypothetical protein YP_002731314.1 1491489 D 123214 CDS YP_002731315.1 225851081 7676180 1491812..1493848 1 NC_012440.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensor histidine kinase/response regulator 1493848 7676180 PERMA_1548 Persephonella marina EX-H1 sensor histidine kinase/response regulator YP_002731315.1 1491812 D 123214 CDS YP_002731316.1 225851082 7674789 1493848..1495242 1 NC_012440.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; transcriptional regulatory protein ZraR 1495242 7674789 PERMA_1549 Persephonella marina EX-H1 transcriptional regulatory protein ZraR YP_002731316.1 1493848 D 123214 CDS YP_002731317.1 225851083 7675357 1495291..1497624 1 NC_012440.1 identified by match to protein family HMM PF00488; match to protein family HMM PF01713; match to protein family HMM TIGR01069; MutS2 protein 1497624 7675357 PERMA_1550 Persephonella marina EX-H1 MutS2 protein YP_002731317.1 1495291 D 123214 CDS YP_002731318.1 225851084 7674672 1497635..1498144 1 NC_012440.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382; intracellular protease 1 (Intracellular protease I) 1498144 7674672 PERMA_1551 Persephonella marina EX-H1 intracellular protease 1 (Intracellular protease I) YP_002731318.1 1497635 D 123214 CDS YP_002731319.1 225851085 7676113 1498144..1499037 1 NC_012440.1 identified by match to protein family HMM PF00480; xylose repressor 1499037 7676113 PERMA_1552 Persephonella marina EX-H1 xylose repressor YP_002731319.1 1498144 D 123214 CDS YP_002731320.1 225851086 7674829 1499024..1499449 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1499449 7674829 PERMA_1554 Persephonella marina EX-H1 hypothetical protein YP_002731320.1 1499024 D 123214 CDS YP_002731321.1 225851087 7674801 complement(1499440..1500381) 1 NC_012440.1 identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR00966; protein-export membrane protein SecF 1500381 secF 7674801 secF Persephonella marina EX-H1 protein-export membrane protein SecF YP_002731321.1 1499440 R 123214 CDS YP_002731322.1 225851088 7675800 complement(1500391..1501929) 1 NC_012440.1 identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR01129; protein-export membrane protein SecD 1501929 secD 7675800 secD Persephonella marina EX-H1 protein-export membrane protein SecD YP_002731322.1 1500391 R 123214 CDS YP_002731323.1 225851089 7674902 1502063..1504447 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1504447 7674902 PERMA_1556 Persephonella marina EX-H1 hypothetical protein YP_002731323.1 1502063 D 123214 CDS YP_002731324.1 225851090 7674669 complement(1504493..1505842) 1 NC_012440.1 identified by match to protein family HMM PF00342; glucose-6-phosphate isomerase 1505842 pgi 7674669 pgi Persephonella marina EX-H1 glucose-6-phosphate isomerase YP_002731324.1 1504493 R 123214 CDS YP_002731325.1 225851091 7675981 complement(1505851..1507110) 1 NC_012440.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1507110 serS 7675981 serS Persephonella marina EX-H1 seryl-tRNA synthetase YP_002731325.1 1505851 R 123214 CDS YP_002731326.1 225851092 7674722 complement(1507120..1508124) 1 NC_012440.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 1508124 7674722 PERMA_1559 Persephonella marina EX-H1 hypothetical protein YP_002731326.1 1507120 R 123214 CDS YP_002731327.1 225851093 7675036 1508190..1512065 1 NC_012440.1 identified by match to protein family HMM PF04357; hypothetical protein 1512065 7675036 PERMA_1561 Persephonella marina EX-H1 hypothetical protein YP_002731327.1 1508190 D 123214 CDS YP_002731328.1 225851094 7675751 complement(1512043..1512645) 1 NC_012440.1 identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566; para-aminobenzoate synthase glutamine amidotransferase component II (ADC synthase) 1512645 7675751 PERMA_1560 Persephonella marina EX-H1 para-aminobenzoate synthase glutamine amidotransferase component II (ADC synthase) YP_002731328.1 1512043 R 123214 CDS YP_002731329.1 225851095 7676061 1512789..1516442 1 NC_012440.1 identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01443; match to protein family HMM TIGR01445; DNA gyrase subunit A 1516442 7676061 PERMA_1562 Persephonella marina EX-H1 DNA gyrase subunit A YP_002731329.1 1512789 D 123214 CDS YP_002731330.1 225851096 7675758 1516432..1516641 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1516641 7675758 PERMA_1563 Persephonella marina EX-H1 hypothetical protein YP_002731330.1 1516432 D 123214 CDS YP_002731331.1 225851097 7675070 complement(1516642..1516956) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1516956 7675070 PERMA_1564 Persephonella marina EX-H1 hypothetical protein YP_002731331.1 1516642 R 123214 CDS YP_002731332.1 225851098 7674313 complement(1516985..1517491) 1 NC_012440.1 hypothetical protein 1517491 7674313 PERMA_1565 Persephonella marina EX-H1 hypothetical protein YP_002731332.1 1516985 R 123214 CDS YP_002731333.1 225851099 7675217 complement(1517475..1518395) 1 NC_012440.1 identified by match to protein family HMM PF00994; match to protein family HMM PF01967; match to protein family HMM TIGR00177; match to protein family HMM TIGR00581; molybdenum cofactor biosynthesis bifunctional protein: molybdenum cofactor biosynthesis protein C/molybdenum cofactor biosynthesis protein B 1518395 7675217 PERMA_1566 Persephonella marina EX-H1 molybdenum cofactor biosynthesis bifunctional protein: molybdenum cofactor biosynthesis protein C/molybdenum cofactor biosynthesis protein B YP_002731333.1 1517475 R 123214 CDS YP_002731334.1 225851100 7674766 complement(1518433..1518960) 1 NC_012440.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 1518960 hpt 7674766 hpt Persephonella marina EX-H1 hypoxanthine phosphoribosyltransferase YP_002731334.1 1518433 R 123214 CDS YP_002731335.1 225851101 7674853 complement(1518989..1519420) 1 NC_012440.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase 1519420 rimI 7674853 rimI Persephonella marina EX-H1 ribosomal-protein-alanine acetyltransferase YP_002731335.1 1518989 R 123214 CDS YP_002731336.1 225851102 7674692 complement(1519420..1520700) 1 NC_012440.1 identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506; riboflavin biosynthesis protein ribBA 1520700 7674692 PERMA_1569 Persephonella marina EX-H1 riboflavin biosynthesis protein ribBA YP_002731336.1 1519420 R 123214 CDS YP_002731337.1 225851103 7674190 complement(1520706..1520933) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1520933 7674190 PERMA_1570 Persephonella marina EX-H1 hypothetical protein YP_002731337.1 1520706 R 123214 CDS YP_002731338.1 225851104 7675359 1521092..1522246 1 NC_012440.1 hypothetical protein 1522246 7675359 PERMA_1571 Persephonella marina EX-H1 hypothetical protein YP_002731338.1 1521092 D 123214 CDS YP_002731339.1 225851105 7675912 1522265..1523272 1 NC_012440.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975; phosphate ABC transporter substrate-binding protein 1523272 pstS 7675912 pstS Persephonella marina EX-H1 phosphate ABC transporter substrate-binding protein YP_002731339.1 1522265 D 123214 CDS YP_002731340.1 225851106 7676135 1523362..1524303 1 NC_012440.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter permease 1524303 pstC 7676135 pstC Persephonella marina EX-H1 phosphate ABC transporter permease YP_002731340.1 1523362 D 123214 CDS YP_002731341.1 225851107 7675579 1524309..1525151 1 NC_012440.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease 1525151 pstA 7675579 pstA Persephonella marina EX-H1 phosphate ABC transporter permease YP_002731341.1 1524309 D 123214 CDS YP_002731342.1 225851108 7674788 1525151..1525918 1 NC_012440.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00972; phosphate ABC transporter ATP-binding protein 1525918 pstB 7674788 pstB Persephonella marina EX-H1 phosphate ABC transporter ATP-binding protein YP_002731342.1 1525151 D 123214 CDS YP_002731343.1 225851109 7674886 1525934..1526596 1 NC_012440.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transport system regulatory protein PhoU 1526596 phoU 7674886 phoU Persephonella marina EX-H1 phosphate transport system regulatory protein PhoU YP_002731343.1 1525934 D 123214 CDS YP_002731344.1 225851110 7675788 1526589..1527608 1 NC_012440.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; phosphate regulon sensor protein PhoR 1527608 7675788 PERMA_1577 Persephonella marina EX-H1 phosphate regulon sensor protein PhoR YP_002731344.1 1526589 D 123214 CDS YP_002731345.1 225851111 7674823 1527610..1528419 1 NC_012440.1 catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; mannosyl-3-phosphoglycerate phosphatase 1528419 7674823 PERMA_1578 Persephonella marina EX-H1 mannosyl-3-phosphoglycerate phosphatase YP_002731345.1 1527610 D 123214 CDS YP_002731346.1 225851112 7674565 1528394..1529692 1 NC_012440.1 identified by match to protein family HMM PF05161; hydroxypyruvate reductase 1529692 7674565 PERMA_1579 Persephonella marina EX-H1 hydroxypyruvate reductase YP_002731346.1 1528394 D 123214 CDS YP_002731347.1 225851113 7675373 1529694..1530947 1 NC_012440.1 identified by match to protein family HMM PF00535; glycosyl transferase, group 2 family 1530947 7675373 PERMA_1580 Persephonella marina EX-H1 glycosyl transferase, group 2 family YP_002731347.1 1529694 D 123214 CDS YP_002731348.1 225851114 7675426 1530961..1532172 1 NC_012440.1 glucosyl-3-phosphoglycerate synthase 1532172 7675426 PERMA_1582 Persephonella marina EX-H1 glucosyl-3-phosphoglycerate synthase YP_002731348.1 1530961 D 123214 CDS YP_002731349.1 225851115 7675607 complement(1532169..1533116) 1 NC_012440.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01138; cysteine synthase B 1533116 cysM 7675607 cysM Persephonella marina EX-H1 cysteine synthase B YP_002731349.1 1532169 R 123214 CDS YP_002731350.1 225851116 7675843 complement(1533158..1533697) 1 NC_012440.1 identified by match to protein family HMM PF01330; match to protein family HMM PF07499; match to protein family HMM TIGR00084; holliday junction DNA helicase RuvA 1533697 ruvA 7675843 ruvA Persephonella marina EX-H1 holliday junction DNA helicase RuvA YP_002731350.1 1533158 R 123214 CDS YP_002731351.1 225851117 7674547 1533771..1535204 1 NC_012440.1 identified by match to protein family HMM PF00171; match to protein family HMM PF05893; succinate-semialdehyde dehydrogenase [NADP+] (ssdh) 1535204 7674547 PERMA_1584 Persephonella marina EX-H1 succinate-semialdehyde dehydrogenase [NADP+] (ssdh) YP_002731351.1 1533771 D 123214 CDS YP_002731352.1 225851118 7675563 1535337..1535675 1 NC_012440.1 identified by match to protein family HMM PF00543; nitrogen regulatory protein P-II 1535675 7675563 PERMA_1585 Persephonella marina EX-H1 nitrogen regulatory protein P-II YP_002731352.1 1535337 D 123214 CDS YP_002731353.1 225851119 7676000 1535707..1537134 1 NC_012440.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase, type I 1537134 glnA 7676000 glnA Persephonella marina EX-H1 glutamine synthetase, type I YP_002731353.1 1535707 D 123214 CDS YP_002731354.1 225851120 7675804 1537225..1538286 1 NC_012440.1 identified by match to protein family HMM PF07238; type IV pilus assembly protein PilZ 1538286 7675804 PERMA_1587 Persephonella marina EX-H1 type IV pilus assembly protein PilZ YP_002731354.1 1537225 D 123214 CDS YP_002731355.1 225851121 7674661 1538376..1539335 1 NC_012440.1 lipoprotein 1539335 7674661 PERMA_1588 Persephonella marina EX-H1 lipoprotein YP_002731355.1 1538376 D 123214 CDS YP_002731356.1 225851122 7675272 1539341..1541953 1 NC_012440.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; slei family protein 1541953 7675272 PERMA_1589 Persephonella marina EX-H1 slei family protein YP_002731356.1 1539341 D 123214 CDS YP_002731357.1 225851123 7674335 1541998..1542663 1 NC_012440.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; hypothetical protein 1542663 7674335 PERMA_1590 Persephonella marina EX-H1 hypothetical protein YP_002731357.1 1541998 D 123214 CDS YP_002731358.1 225851124 7674717 1542647..1543249 1 NC_012440.1 hypothetical protein 1543249 7674717 PERMA_1591 Persephonella marina EX-H1 hypothetical protein YP_002731358.1 1542647 D 123214 CDS YP_002731359.1 225851125 7674251 1543251..1543853 1 NC_012440.1 identified by match to protein family HMM PF01121; match to protein family HMM TIGR00152; dephospho-CoA kinase 1543853 coaE 7674251 coaE Persephonella marina EX-H1 dephospho-CoA kinase YP_002731359.1 1543251 D 123214 CDS YP_002731360.1 225851126 7674852 1543850..1544113 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1544113 7674852 PERMA_1593 Persephonella marina EX-H1 hypothetical protein YP_002731360.1 1543850 D 123214 CDS YP_002731361.1 225851127 7675679 1544085..1544468 1 NC_012440.1 lipoprotein 1544468 7675679 PERMA_1595 Persephonella marina EX-H1 lipoprotein YP_002731361.1 1544085 D 123214 CDS YP_002731362.1 225851128 7674575 complement(1544461..1545612) 1 NC_012440.1 identified by match to protein family HMM PF07690; transporter, major facilitator family 1545612 7674575 PERMA_1594 Persephonella marina EX-H1 transporter, major facilitator family YP_002731362.1 1544461 R 123214 CDS YP_002731363.1 225851129 7675530 complement(1545609..1546151) 1 NC_012440.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093; RNA pseudouridine synthase family protein 1546151 7675530 PERMA_1596 Persephonella marina EX-H1 RNA pseudouridine synthase family protein YP_002731363.1 1545609 R 123214 CDS YP_002731364.1 225851130 7674563 complement(1546394..1546666) 1 NC_012440.1 identified by match to protein family HMM PF00216; histone family protein DNA-binding protein 1546666 7674563 PERMA_1597 Persephonella marina EX-H1 histone family protein DNA-binding protein YP_002731364.1 1546394 R 123214 CDS YP_002731365.1 225851131 7675911 complement(1546848..1547072) 1 NC_012440.1 hypothetical protein 1547072 7675911 PERMA_1598 Persephonella marina EX-H1 hypothetical protein YP_002731365.1 1546848 R 123214 CDS YP_002731366.1 225851132 7674424 complement(1547096..1549777) 1 NC_012440.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02463; DNA double-strand break repair protein Rad50 1549777 7674424 PERMA_1599 Persephonella marina EX-H1 DNA double-strand break repair protein Rad50 YP_002731366.1 1547096 R 123214 CDS YP_002731367.1 225851133 7674679 complement(1549774..1550088) 1 NC_012440.1 identified by match to protein family HMM PF01910; match to protein family HMM TIGR00106; hypothetical protein 1550088 7674679 PERMA_1600 Persephonella marina EX-H1 hypothetical protein YP_002731367.1 1549774 R 123214 CDS YP_002731368.1 225851134 7674909 1550161..1551426 1 NC_012440.1 identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase 1551426 rumA 7674909 rumA Persephonella marina EX-H1 23S rRNA (uracil-5-)-methyltransferase YP_002731368.1 1550161 D 123214 CDS YP_002731369.1 225851135 7674289 1551526..1552479 1 NC_012440.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; oligopeptide transport ATP-binding protein AppF 1552479 7674289 PERMA_1602 Persephonella marina EX-H1 oligopeptide transport ATP-binding protein AppF YP_002731369.1 1551526 D 123214 CDS YP_002731370.1 225851136 7675329 1552472..1553761 1 NC_012440.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; hypothetical protein 1553761 7675329 PERMA_1603 Persephonella marina EX-H1 hypothetical protein YP_002731370.1 1552472 D 123214 CDS YP_002731371.1 225851137 7675025 1553754..1555040 1 NC_012440.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; hemolysin 1555040 7675025 PERMA_1605 Persephonella marina EX-H1 hemolysin YP_002731371.1 1553754 D 123214 CDS YP_002731372.1 225851138 7674919 complement(1555137..1556324) 1 NC_012440.1 identified by match to protein family HMM PF07690; major facilitator family transporter 1556324 7674919 PERMA_1606 Persephonella marina EX-H1 major facilitator family transporter YP_002731372.1 1555137 R 123214 CDS YP_002731373.1 225851139 7674474 complement(1556371..1556997) 1 NC_012440.1 identified by match to protein family HMM PF02527; match to protein family HMM TIGR00138; 16S rRNA methyltransferase GidB 1556997 gidB 7674474 gidB Persephonella marina EX-H1 16S rRNA methyltransferase GidB YP_002731373.1 1556371 R 123214 CDS YP_002731374.1 225851140 7676178 complement(1556994..1557662) 1 NC_012440.1 Responsible for removing an oxidatively damaged form of guanine (7,8-dihydro-8-oxoguanine = 7-oxoG) from DNA. Also nicks DNA at apurinic/apyrimidinic sites; N-glycosylase/DNA lyase 1557662 7676178 PERMA_1608 Persephonella marina EX-H1 N-glycosylase/DNA lyase YP_002731374.1 1556994 R 123214 CDS YP_002731375.1 225851141 7675724 complement(1557659..1558384) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1558384 7675724 PERMA_1609 Persephonella marina EX-H1 hypothetical protein YP_002731375.1 1557659 R 123214 CDS YP_002731376.1 225851142 7675086 complement(1558440..1559681) 1 NC_012440.1 identified by match to protein family HMM PF02677; hypothetical protein 1559681 7675086 PERMA_1610 Persephonella marina EX-H1 hypothetical protein YP_002731376.1 1558440 R 123214 CDS YP_002731377.1 225851143 7674291 complement(1559671..1560258) 1 NC_012440.1 identified by match to protein family HMM PF01402; HNH endonuclease 1560258 7674291 PERMA_1611 Persephonella marina EX-H1 HNH endonuclease YP_002731377.1 1559671 R 123214 CDS YP_002731378.1 225851144 7675632 1560599..1561552 1 NC_012440.1 identified by match to protein family HMM PF01544; match to protein family HMM TIGR00383; magnesium and cobalt transport protein CorA 1561552 corA 7675632 corA Persephonella marina EX-H1 magnesium and cobalt transport protein CorA YP_002731378.1 1560599 D 123214 CDS YP_002731379.1 225851145 7676147 1561601..1561960 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1561960 7676147 PERMA_1613 Persephonella marina EX-H1 hypothetical protein YP_002731379.1 1561601 D 123214 CDS YP_002731380.1 225851146 7674874 1562015..1563472 1 NC_012440.1 identified by match to protein family HMM PF06429; match to protein family HMM TIGR02492; flagellar hook-associated protein FlgK 1563472 flgK 7674874 flgK Persephonella marina EX-H1 flagellar hook-associated protein FlgK YP_002731380.1 1562015 D 123214 CDS YP_002731381.1 225851147 7674733 1563538..1564503 1 NC_012440.1 identified by match to protein family HMM TIGR02550; flagellar hook-associated protein 3 1564503 flgL 7674733 flgL Persephonella marina EX-H1 flagellar hook-associated protein 3 YP_002731381.1 1563538 D 123214 CDS YP_002731382.1 225851148 7675858 complement(1564504..1564755) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1564755 7675858 PERMA_1616 Persephonella marina EX-H1 hypothetical protein YP_002731382.1 1564504 R 123214 CDS YP_002731383.1 225851149 7674814 complement(1564728..1565096) 1 NC_012440.1 identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208; flagellar protein FliS 1565096 fliS 7674814 fliS Persephonella marina EX-H1 flagellar protein FliS YP_002731383.1 1564728 R 123214 CDS YP_002731384.1 225851150 7674560 complement(1565110..1566438) 1 NC_012440.1 identified by match to protein family HMM PF02465; match to protein family HMM PF07195; flagellar hook-associated protein 2 FliD 1566438 7674560 PERMA_1618 Persephonella marina EX-H1 flagellar hook-associated protein 2 FliD YP_002731384.1 1565110 R 123214 CDS YP_002731385.1 225851151 7674417 complement(1566443..1566805) 1 NC_012440.1 identified by match to protein family HMM PF03646; flagellar protein FlaG 1566805 7674417 PERMA_1619 Persephonella marina EX-H1 flagellar protein FlaG YP_002731385.1 1566443 R 123214 CDS YP_002731386.1 225851152 7674411 complement(1566866..1567732) 1 NC_012440.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700; flagellar filament 34.5 kDa core protein (Class B) 1567732 7674411 PERMA_1620 Persephonella marina EX-H1 flagellar filament 34.5 kDa core protein (Class B) YP_002731386.1 1566866 R 123214 CDS YP_002731387.1 225851153 7675134 complement(1567814..1569730) 1 NC_012440.1 identified by match to protein family HMM PF01973; hypothetical protein 1569730 7675134 PERMA_1621 Persephonella marina EX-H1 hypothetical protein YP_002731387.1 1567814 R 123214 CDS YP_002731388.1 225851154 7674588 complement(1569720..1570406) 1 NC_012440.1 identified by match to protein family HMM PF02348; N-acylneuraminate cytidylyltransferase (CMP-N-acetylneuraminic acid synthetase) (CMP-NeuNAc synthetase) (CMP-sialicacid synthetase) 1570406 7674588 PERMA_1622 Persephonella marina EX-H1 N-acylneuraminate cytidylyltransferase (CMP-N-acetylneuraminic acid synthetase) (CMP-NeuNAc synthetase) (CMP-sialicacid synthetase) YP_002731388.1 1569720 R 123214 CDS YP_002731389.1 225851155 7674770 complement(1570403..1571467) 1 NC_012440.1 identified by match to protein family HMM PF00483; match to protein family HMM PF00571; nucleotidyl transferase 1571467 7674770 PERMA_1623 Persephonella marina EX-H1 nucleotidyl transferase YP_002731389.1 1570403 R 123214 CDS YP_002731390.1 225851156 7675887 complement(1571460..1572632) 1 NC_012440.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR03568; UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing 1572632 neuC 7675887 neuC Persephonella marina EX-H1 UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing YP_002731390.1 1571460 R 123214 CDS YP_002731391.1 225851157 7675126 complement(1572634..1573053) 1 NC_012440.1 identified by match to protein family HMM PF01850; PIN domain protein 1573053 7675126 PERMA_1625 Persephonella marina EX-H1 PIN domain protein YP_002731391.1 1572634 R 123214 CDS YP_002731392.1 225851158 7675727 complement(1573043..1573243) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1573243 7675727 PERMA_1626 Persephonella marina EX-H1 hypothetical protein YP_002731392.1 1573043 R 123214 CDS YP_002731393.1 225851159 7675057 complement(1573304..1574311) 1 NC_012440.1 identified by match to protein family HMM PF03102; match to protein family HMM PF08666; match to protein family HMM TIGR03569; N-acetylneuraminate synthase 1574311 neuB 7675057 neuB Persephonella marina EX-H1 N-acetylneuraminate synthase YP_002731393.1 1573304 R 123214 CDS YP_002731394.1 225851160 7674638 complement(1574308..1574940) 1 NC_012440.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR03570; transferase hexapeptide repeat protein 1574940 7674638 PERMA_1628 Persephonella marina EX-H1 transferase hexapeptide repeat protein YP_002731394.1 1574308 R 123214 CDS YP_002731395.1 225851161 7675450 complement(1574937..1576028) 1 NC_012440.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01041; match to protein family HMM PF01212; DegT/DnrJ/EryC1/StrS aminotransferase 1576028 7675450 PERMA_1629 Persephonella marina EX-H1 DegT/DnrJ/EryC1/StrS aminotransferase YP_002731395.1 1574937 R 123214 CDS YP_002731396.1 225851162 7675018 complement(1576021..1577019) 1 NC_012440.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase 1577019 7675018 PERMA_1630 Persephonella marina EX-H1 NAD-dependent epimerase/dehydratase YP_002731396.1 1576021 R 123214 CDS YP_002731397.1 225851163 7675671 complement(1577441..1578496) 1 NC_012440.1 identified by match to protein family HMM PF01925; membrane protein 1578496 7675671 PERMA_1631 Persephonella marina EX-H1 membrane protein YP_002731397.1 1577441 R 123214 CDS YP_002731398.1 225851164 7675438 1578589..1580193 1 NC_012440.1 identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase 1580193 7675438 PERMA_1632 Persephonella marina EX-H1 dolichyl-phosphate-mannose-protein mannosyltransferase YP_002731398.1 1578589 D 123214 CDS YP_002731399.1 225851165 7674450 1580199..1580948 1 NC_012440.1 identified by match to protein family HMM PF01063; aminodeoxychorismate lyase (4-amino-4-deoxychorismatelyase) (adc lyase) (adcl) 1580948 7674450 PERMA_1633 Persephonella marina EX-H1 aminodeoxychorismate lyase (4-amino-4-deoxychorismatelyase) (adc lyase) (adcl) YP_002731399.1 1580199 D 123214 CDS YP_002731400.1 225851166 7675802 1580967..1582199 1 NC_012440.1 identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00656; match to protein family HMM TIGR00657; asparate kinase, monofunctional class 1582199 7675802 PERMA_1634 Persephonella marina EX-H1 asparate kinase, monofunctional class YP_002731400.1 1580967 D 123214 CDS YP_002731401.1 225851167 7674365 1582212..1583648 1 NC_012440.1 identified by match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443; match to protein family HMM TIGR00514; acetyl-CoA carboxylase, biotin carboxylase subunit 1583648 accC_2 7674365 accC_2 Persephonella marina EX-H1 acetyl-CoA carboxylase, biotin carboxylase subunit YP_002731401.1 1582212 D 123214 CDS YP_002731402.1 225851168 7675315 1583661..1584947 1 NC_012440.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1584947 eno 7675315 eno Persephonella marina EX-H1 phosphopyruvate hydratase YP_002731402.1 1583661 D 123214 CDS YP_002731403.1 225851169 7674301 1584901..1585317 1 NC_012440.1 identified by match to protein family HMM PF04977; septum formation initiator 1585317 7674301 PERMA_1637 Persephonella marina EX-H1 septum formation initiator YP_002731403.1 1584901 D 123214 CDS YP_002731404.1 225851170 7674488 1585269..1585976 1 NC_012440.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; match to protein family HMM TIGR01662; phosphoglycolate phosphatase (PGPase) (PGP) 1585976 7674488 PERMA_1639 Persephonella marina EX-H1 phosphoglycolate phosphatase (PGPase) (PGP) YP_002731404.1 1585269 D 123214 CDS YP_002731405.1 225851171 7675479 complement(1585973..1587133) 1 NC_012440.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein 1587133 argJ 7675479 argJ Persephonella marina EX-H1 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein YP_002731405.1 1585973 R 123214 CDS YP_002731406.1 225851172 7675290 complement(1587133..1587606) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1587606 7675290 PERMA_1640 Persephonella marina EX-H1 hypothetical protein YP_002731406.1 1587133 R 123214 CDS YP_002731407.1 225851173 7676012 complement(1587617..1589578) 1 NC_012440.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; NADH dehydrogenase i chain g 1589578 7676012 PERMA_1641 Persephonella marina EX-H1 NADH dehydrogenase i chain g YP_002731407.1 1587617 R 123214 CDS YP_002731408.1 225851174 7674686 complement(1589656..1590189) 1 NC_012440.1 identified by match to protein family HMM PF02620; hypothetical protein 1590189 7674686 PERMA_1642 Persephonella marina EX-H1 hypothetical protein YP_002731408.1 1589656 R 123214 CDS YP_002731409.1 225851175 7674187 1590291..1590833 1 NC_012440.1 identified by match to protein family HMM PF00692; match to protein family HMM TIGR02274; deoxycytidine triphosphate deaminase 1590833 dcd 7674187 dcd Persephonella marina EX-H1 deoxycytidine triphosphate deaminase YP_002731409.1 1590291 D 123214 CDS YP_002731410.1 225851176 7676077 complement(1590830..1592158) 1 NC_012440.1 lipoprotein 1592158 7676077 PERMA_1643 Persephonella marina EX-H1 lipoprotein YP_002731410.1 1590830 R 123214 CDS YP_002731411.1 225851177 7674231 complement(1592179..1592553) 1 NC_012440.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP 1592553 7674231 PERMA_1645 Persephonella marina EX-H1 endoribonuclease L-PSP YP_002731411.1 1592179 R 123214 CDS YP_002731412.1 225851178 7675534 complement(1592556..1593281) 1 NC_012440.1 identified by match to protein family HMM PF00977; match to protein family HMM TIGR00007; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase 1593281 hisA 7675534 hisA Persephonella marina EX-H1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase YP_002731412.1 1592556 R 123214 CDS YP_002731413.1 225851179 7675684 complement(1593291..1594877) 1 NC_012440.1 identified by match to protein family HMM PF03109; ubiquinone biosynthesis protein AarF 1594877 7675684 PERMA_1647 Persephonella marina EX-H1 ubiquinone biosynthesis protein AarF YP_002731413.1 1593291 R 123214 CDS YP_002731414.1 225851180 7675243 complement(1594881..1595966) 1 NC_012440.1 identified by match to protein family HMM PF02511; thymidylate synthase ThyX (TS) (TSase) 1595966 7675243 PERMA_1648 Persephonella marina EX-H1 thymidylate synthase ThyX (TS) (TSase) YP_002731414.1 1594881 R 123214 CDS YP_002731415.1 225851181 7675319 complement(1596007..1597269) 1 NC_012440.1 identified by match to protein family HMM PF00563; match to protein family HMM PF08668; EAL domain protein 1597269 7675319 PERMA_1649 Persephonella marina EX-H1 EAL domain protein YP_002731415.1 1596007 R 123214 CDS YP_002731416.1 225851182 7675005 1597328..1597891 1 NC_012440.1 identified by match to protein family HMM PF01661; appr-1-p processing domain protein 1597891 7675005 PERMA_1650 Persephonella marina EX-H1 appr-1-p processing domain protein YP_002731416.1 1597328 D 123214 CDS YP_002731417.1 225851183 7676063 1597891..1598682 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1598682 7676063 PERMA_1651 Persephonella marina EX-H1 hypothetical protein YP_002731417.1 1597891 D 123214 CDS YP_002731418.1 225851184 7676064 1598708..1599979 1 NC_012440.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; processing protease 1599979 7676064 PERMA_1652 Persephonella marina EX-H1 processing protease YP_002731418.1 1598708 D 123214 CDS YP_002731419.1 225851185 7676032 complement(1599980..1601878) 1 NC_012440.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase/phosphodiesterase 1601878 7676032 PERMA_1653 Persephonella marina EX-H1 diguanylate cyclase/phosphodiesterase YP_002731419.1 1599980 R 123214 CDS YP_002731420.1 225851186 7674859 complement(1601872..1602315) 1 NC_012440.1 hypothetical protein 1602315 7674859 PERMA_1654 Persephonella marina EX-H1 hypothetical protein YP_002731420.1 1601872 R 123214 CDS YP_002731421.1 225851187 7675492 complement(1602315..1604150) 1 NC_012440.1 hypothetical protein 1604150 7675492 PERMA_1655 Persephonella marina EX-H1 hypothetical protein YP_002731421.1 1602315 R 123214 CDS YP_002731422.1 225851188 7674826 complement(1604186..1604797) 1 NC_012440.1 molybdopterin-guanine biosynthesis protein 1604797 7674826 PERMA_1656 Persephonella marina EX-H1 molybdopterin-guanine biosynthesis protein YP_002731422.1 1604186 R 123214 CDS YP_002731423.1 225851189 7674510 complement(1604797..1605945) 1 NC_012440.1 identified by match to protein family HMM PF02321; outer membrane efflux protein 1605945 7674510 PERMA_1657 Persephonella marina EX-H1 outer membrane efflux protein YP_002731423.1 1604797 R 123214 CDS YP_002731424.1 225851190 7674531 complement(1605966..1606400) 1 NC_012440.1 identified by match to protein family HMM PF01475; transcriptional regulator 1606400 7674531 PERMA_1658 Persephonella marina EX-H1 transcriptional regulator YP_002731424.1 1605966 R 123214 CDS YP_002731425.1 225851191 7675416 complement(1606403..1607011) 1 NC_012440.1 flavin reductase domain protein, FMN-binding 1607011 7675416 PERMA_1659 Persephonella marina EX-H1 flavin reductase domain protein, FMN-binding YP_002731425.1 1606403 R 123214 CDS YP_002731426.1 225851192 7675582 complement(1607060..1607824) 1 NC_012440.1 identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945; twin arginine-targeting protein translocase TatC 1607824 tatC 7675582 tatC Persephonella marina EX-H1 twin arginine-targeting protein translocase TatC YP_002731426.1 1607060 R 123214 CDS YP_002731427.1 225851193 7675299 complement(1607799..1608149) 1 NC_012440.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01410; twin-arginine translocation system component TatB 1608149 7675299 PERMA_1661 Persephonella marina EX-H1 twin-arginine translocation system component TatB YP_002731427.1 1607799 R 123214 CDS YP_002731428.1 225851194 7675428 complement(1608191..1610722) 1 NC_012440.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244; outer membrane protein, OMP85 family 1610722 7675428 PERMA_1662 Persephonella marina EX-H1 outer membrane protein, OMP85 family YP_002731428.1 1608191 R 123214 CDS YP_002731429.1 225851195 7675810 complement(1610726..1612231) 1 NC_012440.1 identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase 1612231 7675810 PERMA_1663 Persephonella marina EX-H1 dolichyl-phosphate-mannose-protein mannosyltransferase YP_002731429.1 1610726 R 123214 CDS YP_002731430.1 225851196 7674359 1612299..1613087 1 NC_012440.1 identified by match to protein family HMM PF08543; match to protein family HMM TIGR00097; phosphomethylpyrimidine kinase 1613087 thiD 7674359 thiD Persephonella marina EX-H1 phosphomethylpyrimidine kinase YP_002731430.1 1612299 D 123214 CDS YP_002731431.1 225851197 7675797 1613084..1613755 1 NC_012440.1 phosphoribosyltransferase 1613755 7675797 PERMA_1665 Persephonella marina EX-H1 phosphoribosyltransferase YP_002731431.1 1613084 D 123214 CDS YP_002731432.1 225851198 7674798 1613800..1615110 1 NC_012440.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; UDP-glucose 6-dehydrogenase 1615110 7674798 PERMA_1666 Persephonella marina EX-H1 UDP-glucose 6-dehydrogenase YP_002731432.1 1613800 D 123214 CDS YP_002731433.1 225851199 7674408 complement(1615115..1616146) 1 NC_012440.1 identified by match to protein family HMM PF01594; PerM protein 1616146 7674408 PERMA_1667 Persephonella marina EX-H1 PerM protein YP_002731433.1 1615115 R 123214 CDS YP_002731434.1 225851200 7675155 complement(1616192..1616593) 1 NC_012440.1 Decarboxylation of S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase proenzyme 1616593 speD_1 7675155 speD_1 Persephonella marina EX-H1 S-adenosylmethionine decarboxylase proenzyme YP_002731434.1 1616192 R 123214 CDS YP_002731435.1 225851201 7676133 1616778..1620326 1 NC_012440.1 identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607; match to protein family HMM PF02965; match to protein family HMM TIGR02082; methionine synthase 1620326 metH 7676133 metH Persephonella marina EX-H1 methionine synthase YP_002731435.1 1616778 D 123214 CDS YP_002731436.1 225851202 7674619 complement(1620311..1621036) 1 NC_012440.1 identified by match to protein family HMM PF04463; photoreactivation-associated protein 1621036 7674619 PERMA_1669 Persephonella marina EX-H1 photoreactivation-associated protein YP_002731436.1 1620311 R 123214 CDS YP_002731437.1 225851203 7675560 complement(1621029..1621964) 1 NC_012440.1 identified by match to protein family HMM PF00762; match to protein family HMM TIGR00109; ferrochelatase 1621964 hemH 7675560 hemH Persephonella marina EX-H1 ferrochelatase YP_002731437.1 1621029 R 123214 CDS YP_002731438.1 225851204 7675886 1622067..1622405 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1622405 7675886 PERMA_1672 Persephonella marina EX-H1 hypothetical protein YP_002731438.1 1622067 D 123214 CDS YP_002731439.1 225851205 7675753 complement(1622414..1624147) 1 NC_012440.1 identified by match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02393; match to protein family HMM TIGR02937; RNA polymerase sigma factor RpoD (Sigma-70) 1624147 7675753 PERMA_1673 Persephonella marina EX-H1 RNA polymerase sigma factor RpoD (Sigma-70) YP_002731439.1 1622414 R 123214 CDS YP_002731440.1 225851206 7675058 complement(1624144..1625790) 1 NC_012440.1 identified by match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM PF08275; match to protein family HMM TIGR01391; DNA primase 1625790 dnaG 7675058 dnaG Persephonella marina EX-H1 DNA primase YP_002731440.1 1624144 R 123214 CDS YP_002731441.1 225851207 7675123 1625923..1626993 1 NC_012440.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 1626993 folP 7675123 folP Persephonella marina EX-H1 dihydropteroate synthase YP_002731441.1 1625923 D 123214 CDS YP_002731442.1 225851208 7674756 1626986..1627828 1 NC_012440.1 identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159; hypothetical protein 1627828 7674756 PERMA_1676 Persephonella marina EX-H1 hypothetical protein YP_002731442.1 1626986 D 123214 CDS YP_002731443.1 225851209 7674257 1627816..1628199 1 NC_012440.1 hypothetical protein 1628199 7674257 PERMA_1677 Persephonella marina EX-H1 hypothetical protein YP_002731443.1 1627816 D 123214 CDS YP_002731444.1 225851210 7676065 1628235..1630175 1 NC_012440.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 1630175 thrS 7676065 thrS Persephonella marina EX-H1 threonyl-tRNA synthetase YP_002731444.1 1628235 D 123214 CDS YP_002731445.1 225851211 7675049 complement(1630181..1630867) 1 NC_012440.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; alkaline phosphatase synthesis transcriptional regulatory proteinphoP 1630867 7675049 PERMA_1679 Persephonella marina EX-H1 alkaline phosphatase synthesis transcriptional regulatory proteinphoP YP_002731445.1 1630181 R 123214 CDS YP_002731446.1 225851212 7674934 1631259..1632596 1 NC_012440.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 1632596 proA 7674934 proA Persephonella marina EX-H1 gamma-glutamyl phosphate reductase YP_002731446.1 1631259 D 123214 CDS YP_002731447.1 225851213 7675670 1632606..1633277 1 NC_012440.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325; transcriptional regulator, Crp/Fnr family 1633277 7675670 PERMA_1683 Persephonella marina EX-H1 transcriptional regulator, Crp/Fnr family YP_002731447.1 1632606 D 123214 CDS YP_002731448.1 225851214 7674821 1633277..1634068 1 NC_012440.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 1634068 panB 7674821 panB Persephonella marina EX-H1 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_002731448.1 1633277 D 123214 CDS YP_002731449.1 225851215 7675059 1634061..1634672 1 NC_012440.1 identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein 1634672 7675059 PERMA_1686 Persephonella marina EX-H1 Sua5/YciO/YrdC/YwlC family protein YP_002731449.1 1634061 D 123214 CDS YP_002731450.1 225851216 7674487 complement(1634658..1635938) 1 NC_012440.1 identified by match to protein family HMM PF00390; match to protein family HMM PF03949; NADP-dependent malic enzyme 1635938 maeB 7674487 maeB Persephonella marina EX-H1 NADP-dependent malic enzyme YP_002731450.1 1634658 R 123214 CDS YP_002731451.1 225851217 7676166 complement(1635965..1636390) 1 NC_012440.1 identified by match to protein family HMM PF02675; match to protein family HMM TIGR03330; S-adenosylmethionine decarboxylase proenzyme 1636390 speD_2 7676166 speD_2 Persephonella marina EX-H1 S-adenosylmethionine decarboxylase proenzyme YP_002731451.1 1635965 R 123214 CDS YP_002731452.1 225851218 7674740 1636627..1636818 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1636818 7674740 PERMA_1688 Persephonella marina EX-H1 hypothetical protein YP_002731452.1 1636627 D 123214 CDS YP_002731453.1 225851219 7674962 complement(1636862..1639168) 1 NC_012440.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase 1639168 metE 7674962 metE Persephonella marina EX-H1 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase YP_002731453.1 1636862 R 123214 CDS YP_002731454.1 225851220 7675233 1639318..1639731 1 NC_012440.1 identified by match to protein family HMM PF01475; ferric uptake regulator, Fur family 1639731 7675233 PERMA_1691 Persephonella marina EX-H1 ferric uptake regulator, Fur family YP_002731454.1 1639318 D 123214 CDS YP_002731455.1 225851221 7675452 complement(1639723..1640298) 1 NC_012440.1 hypothetical protein 1640298 7675452 PERMA_1690 Persephonella marina EX-H1 hypothetical protein YP_002731455.1 1639723 R 123214 CDS YP_002731456.1 225851222 7674665 complement(1640302..1642140) 1 NC_012440.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 1642140 7674665 PERMA_1692 Persephonella marina EX-H1 TonB-dependent receptor YP_002731456.1 1640302 R 123214 CDS YP_002731457.1 225851223 7675903 1642251..1642967 1 NC_012440.1 hypothetical protein 1642967 7675903 PERMA_1693 Persephonella marina EX-H1 hypothetical protein YP_002731457.1 1642251 D 123214 CDS YP_002731458.1 225851224 7675371 complement(1642969..1643244) 1 NC_012440.1 ATP synthase 1643244 7675371 PERMA_1694 Persephonella marina EX-H1 ATP synthase YP_002731458.1 1642969 R 123214 CDS YP_002731459.1 225851225 7675041 complement(1643246..1643638) 1 NC_012440.1 identified by match to protein family HMM PF02823; match to protein family HMM TIGR01216; ATP synthase F1 subunit epsilon 1643638 atpC_2 7675041 atpC_2 Persephonella marina EX-H1 ATP synthase F1 subunit epsilon YP_002731459.1 1643246 R 123214 CDS YP_002731460.1 225851226 7674363 complement(1643619..1644986) 1 NC_012440.1 identified by match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM TIGR01039; ATP synthase F1 betsubunit A 1644986 atpD_2 7674363 atpD_2 Persephonella marina EX-H1 ATP synthase F1 betsubunit A YP_002731460.1 1643619 R 123214 CDS YP_002731461.1 225851227 7675792 complement(1644983..1645819) 1 NC_012440.1 identified by match to protein family HMM PF00231; ATP synthase F1 gammsubunit A 1645819 atpG_2 7675792 atpG_2 Persephonella marina EX-H1 ATP synthase F1 gammsubunit A YP_002731461.1 1644983 R 123214 CDS YP_002731462.1 225851228 7675970 complement(1645816..1647303) 1 NC_012440.1 identified by match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM PF09378; match to protein family HMM TIGR00962; ATP synthase F1 alphsubunit A 1647303 atpA_2 7675970 atpA_2 Persephonella marina EX-H1 ATP synthase F1 alphsubunit A YP_002731462.1 1645816 R 123214 CDS YP_002731463.1 225851229 7674911 complement(1647290..1648045) 1 NC_012440.1 identified by match to protein family HMM PF00430; ATP synthase B/B' CF(0) family 1648045 7674911 PERMA_1699 Persephonella marina EX-H1 ATP synthase B/B' CF(0) family YP_002731463.1 1647290 R 123214 CDS YP_002731464.1 225851230 7676047 complement(1648055..1648321) 1 NC_012440.1 identified by match to protein family HMM PF00137; match to protein family HMM TIGR01260; ATP synthase subunit C 1648321 7676047 PERMA_1700 Persephonella marina EX-H1 ATP synthase subunit C YP_002731464.1 1648055 R 123214 CDS YP_002731465.1 225851231 7674232 complement(1648337..1649074) 1 NC_012440.1 identified by match to protein family HMM PF00119; match to protein family HMM TIGR01131; ATP synthase F0 subunit A 1649074 atpB_2 7674232 atpB_2 Persephonella marina EX-H1 ATP synthase F0 subunit A YP_002731465.1 1648337 R 123214 CDS YP_002731466.1 225851232 7675482 complement(1649076..1649333) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1649333 7675482 PERMA_1702 Persephonella marina EX-H1 hypothetical protein YP_002731466.1 1649076 R 123214 CDS YP_002731467.1 225851233 7674792 complement(1649330..1650556) 1 NC_012440.1 identified by match to protein family HMM PF00999; sodium/hydrogen exchanger 1650556 7674792 PERMA_1703 Persephonella marina EX-H1 sodium/hydrogen exchanger YP_002731467.1 1649330 R 123214 CDS YP_002731468.1 225851234 7674278 complement(1650573..1652567) 1 NC_012440.1 identified by match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232; transketolase 1652567 tkt 7674278 tkt Persephonella marina EX-H1 transketolase YP_002731468.1 1650573 R 123214 CDS YP_002731469.1 225851235 7675901 complement(1652649..1653332) 1 NC_012440.1 identified by match to protein family HMM PF03588; match to protein family HMM TIGR00667; leucyl/phenylalanyl-tRNA--protein transferase 1653332 aat 7675901 aat Persephonella marina EX-H1 leucyl/phenylalanyl-tRNA--protein transferase YP_002731469.1 1652649 R 123214 CDS YP_002731470.1 225851236 7675273 complement(1653356..1654249) 1 NC_012440.1 identified by match to protein family HMM PF01142; tRNA pseudouridine synthase D 1654249 truD_2 7675273 truD_2 Persephonella marina EX-H1 tRNA pseudouridine synthase D YP_002731470.1 1653356 R 123214 CDS YP_002731471.1 225851237 7675068 1654323..1654871 1 NC_012440.1 identified by match to protein family HMM PF04368; hypothetical protein 1654871 7675068 PERMA_1707 Persephonella marina EX-H1 hypothetical protein YP_002731471.1 1654323 D 123214 CDS YP_002731472.1 225851238 7675999 1654900..1655940 1 NC_012440.1 identified by match to protein family HMM PF01087; match to protein family HMM TIGR00209; galactose-1-phosphate uridylyltransferase 1655940 galT 7675999 galT Persephonella marina EX-H1 galactose-1-phosphate uridylyltransferase YP_002731472.1 1654900 D 123214 CDS YP_002731473.1 225851239 7675655 1655951..1656631 1 NC_012440.1 identified by match to protein family HMM PF08761; leucyl/phenylalanyl-tRNA--protein transferase 1656631 7675655 PERMA_1709 Persephonella marina EX-H1 leucyl/phenylalanyl-tRNA--protein transferase YP_002731473.1 1655951 D 123214 CDS YP_002731474.1 225851240 7675540 1656648..1657514 1 NC_012440.1 identified by match to protein family HMM PF01972; periplasmic serine protease 1657514 7675540 PERMA_1711 Persephonella marina EX-H1 periplasmic serine protease YP_002731474.1 1656648 D 123214 CDS YP_002731475.1 225851241 7675687 complement(1657492..1657671) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1657671 7675687 PERMA_1710 Persephonella marina EX-H1 hypothetical protein YP_002731475.1 1657492 R 123214 CDS YP_002731476.1 225851242 7674387 complement(1658109..1658993) 1 NC_012440.1 identified by match to protein family HMM PF00763; match to protein family HMM PF02882; bifunctional protein fold protein 1658993 7674387 PERMA_1712 Persephonella marina EX-H1 bifunctional protein fold protein YP_002731476.1 1658109 R 123214 CDS YP_002731477.1 225851243 7675017 complement(1659003..1659242) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1659242 7675017 PERMA_1713 Persephonella marina EX-H1 hypothetical protein YP_002731477.1 1659003 R 123214 CDS YP_002731478.1 225851244 7675457 complement(1659315..1661165) 1 NC_012440.1 identified by match to protein family HMM PF00549; ATP-citrate synthase (ATP-citrate (pro-S-)-lyase)(Citrate cleavage enzyme) 1661165 7675457 PERMA_1714 Persephonella marina EX-H1 ATP-citrate synthase (ATP-citrate (pro-S-)-lyase)(Citrate cleavage enzyme) YP_002731478.1 1659315 R 123214 CDS YP_002731479.1 225851245 7674885 complement(1661195..1662505) 1 NC_012440.1 ATP-citrate synthase (ATP-citrate (pro-S-)-lyase)(Citrate cleavage enzyme) 1662505 7674885 PERMA_1715 Persephonella marina EX-H1 ATP-citrate synthase (ATP-citrate (pro-S-)-lyase)(Citrate cleavage enzyme) YP_002731479.1 1661195 R 123214 CDS YP_002731480.1 225851246 7676046 complement(1662620..1664863) 1 NC_012440.1 identified by match to protein family HMM PF03971; match to protein family HMM TIGR00178; isocitrate dehydrogenase, NADP-dependent 1664863 7676046 PERMA_1716 Persephonella marina EX-H1 isocitrate dehydrogenase, NADP-dependent YP_002731480.1 1662620 R 123214 CDS YP_002731481.1 225851247 7675253 1665092..1666378 1 NC_012440.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase large subunit 1666378 leuC 7675253 leuC Persephonella marina EX-H1 3-isopropylmalate dehydratase large subunit YP_002731481.1 1665092 D 123214 CDS YP_002731482.1 225851248 7675324 1666400..1666594 1 NC_012440.1 hypothetical protein 1666594 7675324 PERMA_1718 Persephonella marina EX-H1 hypothetical protein YP_002731482.1 1666400 D 123214 CDS YP_002731483.1 225851249 7675929 1666591..1667019 1 NC_012440.1 identified by match to protein family HMM PF03652; match to protein family HMM TIGR00250; hypothetical protein 1667019 7675929 PERMA_1719 Persephonella marina EX-H1 hypothetical protein YP_002731483.1 1666591 D 123214 CDS YP_002731484.1 225851250 7674769 1667012..1667992 1 NC_012440.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247; aminodeoxychorismate lyase 1667992 7674769 PERMA_1720 Persephonella marina EX-H1 aminodeoxychorismate lyase YP_002731484.1 1667012 D 123214 CDS YP_002731485.1 225851251 7675877 1668015..1669028 1 NC_012440.1 identified by match to protein family HMM PF03739; permease, YjgP/YjgQ family 1669028 7675877 PERMA_1721 Persephonella marina EX-H1 permease, YjgP/YjgQ family YP_002731485.1 1668015 D 123214 CDS YP_002731486.1 225851252 7675004 complement(1669029..1670327) 1 NC_012440.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1670327 aroA 7675004 aroA Persephonella marina EX-H1 3-phosphoshikimate 1-carboxyvinyltransferase YP_002731486.1 1669029 R 123214 CDS YP_002731487.1 225851253 7675072 complement(1670335..1671255) 1 NC_012440.1 general secretion pathway protein A 1671255 7675072 PERMA_1723 Persephonella marina EX-H1 general secretion pathway protein A YP_002731487.1 1670335 R 123214 CDS YP_002731488.1 225851254 7675953 complement(1671255..1671725) 1 NC_012440.1 identified by match to protein family HMM PF03968; match to protein family HMM TIGR03002; lipopolysaccharide transport periplasmic protein LptA 1671725 lptA 7675953 lptA Persephonella marina EX-H1 lipopolysaccharide transport periplasmic protein LptA YP_002731488.1 1671255 R 123214 CDS YP_002731489.1 225851255 7674256 complement(1671726..1672238) 1 NC_012440.1 identified by match to protein family HMM PF06835; hypothetical protein 1672238 7674256 PERMA_1725 Persephonella marina EX-H1 hypothetical protein YP_002731489.1 1671726 R 123214 CDS YP_002731490.1 225851256 7676130 complement(1672241..1673557) 1 NC_012440.1 identified by match to protein family HMM PF00745; match to protein family HMM PF01488; match to protein family HMM PF05201; match to protein family HMM TIGR01035; glutamyl-tRNA reductase 1673557 hemA 7676130 hemA Persephonella marina EX-H1 glutamyl-tRNA reductase YP_002731490.1 1672241 R 123214 CDS YP_002731491.1 225851257 7676132 1673662..1675278 1 NC_012440.1 identified by match to protein family HMM PF00209; sodium-dependent transporter 1675278 7676132 PERMA_1727 Persephonella marina EX-H1 sodium-dependent transporter YP_002731491.1 1673662 D 123214 CDS YP_002731492.1 225851258 7675079 1675259..1675381 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1675381 7675079 PERMA_1728 Persephonella marina EX-H1 hypothetical protein YP_002731492.1 1675259 D 123214 CDS YP_002731493.1 225851259 7674776 1675395..1675817 1 NC_012440.1 identified by match to protein family HMM PF00334; nucleoside diphosphate kinase 1675817 7674776 PERMA_1729 Persephonella marina EX-H1 nucleoside diphosphate kinase YP_002731493.1 1675395 D 123214 CDS YP_002731494.1 225851260 7675463 1675810..1676307 1 NC_012440.1 hypothetical protein 1676307 7675463 PERMA_1730 Persephonella marina EX-H1 hypothetical protein YP_002731494.1 1675810 D 123214 CDS YP_002731495.1 225851261 7675828 1676365..1676748 1 NC_012440.1 identified by match to protein family HMM PF00672; phototaxis transducer II 1676748 7675828 PERMA_1731 Persephonella marina EX-H1 phototaxis transducer II YP_002731495.1 1676365 D 123214 CDS YP_002731496.1 225851262 7674820 1676788..1677756 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1677756 7674820 PERMA_1732 Persephonella marina EX-H1 hypothetical protein YP_002731496.1 1676788 D 123214 CDS YP_002731497.1 225851263 7675325 1677794..1678153 1 NC_012440.1 identified by match to protein family HMM PF03259; roadblock/LC7 domain protein 1678153 7675325 PERMA_1733 Persephonella marina EX-H1 roadblock/LC7 domain protein YP_002731497.1 1677794 D 123214 CDS YP_002731498.1 225851264 7675185 1678160..1678855 1 NC_012440.1 hypothetical protein 1678855 7675185 PERMA_1734 Persephonella marina EX-H1 hypothetical protein YP_002731498.1 1678160 D 123214 CDS YP_002731499.1 225851265 7674358 1678857..1679399 1 NC_012440.1 identified by match to protein family HMM PF00071; match to protein family HMM PF03029; match to protein family HMM PF08477; match to protein family HMM TIGR00231; small GTP-binding protein 1679399 7674358 PERMA_1736 Persephonella marina EX-H1 small GTP-binding protein YP_002731499.1 1678857 D 123214 CDS YP_002731500.1 225851266 7675076 complement(1679396..1680703) 1 NC_012440.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; 5-methylthioadenosine/S-adenosylhomocysteine deaminase 1680703 7675076 PERMA_1735 Persephonella marina EX-H1 5-methylthioadenosine/S-adenosylhomocysteine deaminase YP_002731500.1 1679396 R 123214 CDS YP_002731501.1 225851267 7675216 1680826..1682040 1 NC_012440.1 identified by match to protein family HMM PF02687; lipoprotein releasing system, transmembrane protein, LolC/E family 1682040 7675216 PERMA_1737 Persephonella marina EX-H1 lipoprotein releasing system, transmembrane protein, LolC/E family YP_002731501.1 1680826 D 123214 CDS YP_002731502.1 225851268 7674193 1682033..1682707 1 NC_012440.1 identified by match to protein family HMM PF00005; lipoprotein-releasing system ATP-binding protein LolD 1682707 7674193 PERMA_1738 Persephonella marina EX-H1 lipoprotein-releasing system ATP-binding protein LolD YP_002731502.1 1682033 D 123214 CDS YP_002731503.1 225851269 7676048 1682780..1685230 1 NC_012440.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; negative regulator of genetic competence ClpC/mecB 1685230 7676048 PERMA_1739 Persephonella marina EX-H1 negative regulator of genetic competence ClpC/mecB YP_002731503.1 1682780 D 123214 CDS YP_002731504.1 225851270 7674706 1685623..1687587 1 NC_012440.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303; outer membrane protein assembly complex, YaeT protein 1687587 yaeT 7674706 yaeT Persephonella marina EX-H1 outer membrane protein assembly complex, YaeT protein YP_002731504.1 1685623 D 123214 CDS YP_002731505.1 225851271 7674735 1687599..1688102 1 NC_012440.1 identified by match to protein family HMM PF03938; hypothetical protein 1688102 7674735 PERMA_1741 Persephonella marina EX-H1 hypothetical protein YP_002731505.1 1687599 D 123214 CDS YP_002731506.1 225851272 7674881 1688099..1689085 1 NC_012440.1 identified by match to protein family HMM PF00132; match to protein family HMM PF04613; match to protein family HMM TIGR01853; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 1689085 lpxD 7674881 lpxD Persephonella marina EX-H1 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase YP_002731506.1 1688099 D 123214 CDS YP_002731507.1 225851273 7674978 complement(1689082..1689936) 1 NC_012440.1 identified by match to protein family HMM PF02683; cytochrome C biogenesis protein 1689936 7674978 PERMA_1742 Persephonella marina EX-H1 cytochrome C biogenesis protein YP_002731507.1 1689082 R 123214 CDS YP_002731508.1 225851274 7676038 complement(1689940..1690419) 1 NC_012440.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; thiol/disulfide interchange protein 1690419 7676038 PERMA_1744 Persephonella marina EX-H1 thiol/disulfide interchange protein YP_002731508.1 1689940 R 123214 CDS YP_002731509.1 225851275 7675381 1690542..1691273 1 NC_012440.1 identified by match to protein family HMM PF00111; match to protein family HMM TIGR00384; fumarate reductase iron-sulfur subunit 1691273 7675381 PERMA_1746 Persephonella marina EX-H1 fumarate reductase iron-sulfur subunit YP_002731509.1 1690542 D 123214 CDS YP_002731510.1 225851276 7674660 complement(1691270..1692337) 1 NC_012440.1 identified by match to protein family HMM PF01594; similar to protein aq_740; membrane protein 1692337 7674660 PERMA_1745 Persephonella marina EX-H1 membrane protein YP_002731510.1 1691270 R 123214 CDS YP_002731511.1 225851277 7674209 complement(1692465..1693409) 1 NC_012440.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; UDP-glucuronic acid decarboxylase 1 (UDP-glucuronatedecarboxylase 1) (UXS-1) 1693409 7674209 PERMA_1747 Persephonella marina EX-H1 UDP-glucuronic acid decarboxylase 1 (UDP-glucuronatedecarboxylase 1) (UXS-1) YP_002731511.1 1692465 R 123214 CDS YP_002731512.1 225851278 7675489 complement(1693409..1694632) 1 NC_012440.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; NADH dehydrogenase 1694632 7675489 PERMA_1748 Persephonella marina EX-H1 NADH dehydrogenase YP_002731512.1 1693409 R 123214 CDS YP_002731513.1 225851279 7675189 complement(1694687..1695487) 1 NC_012440.1 catalyzes the reversible formation of fructose 1,6-bisphosphate from glycerone phosphate and D-glyceraldehyde 3-phosphate; fructose-bisphosphate aldolase 1695487 7675189 PERMA_1749 Persephonella marina EX-H1 fructose-bisphosphate aldolase YP_002731513.1 1694687 R 123214 CDS YP_002731514.1 225851280 7675292 complement(1695512..1695649) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1695649 7675292 PERMA_1750 Persephonella marina EX-H1 hypothetical protein YP_002731514.1 1695512 R 123214 CDS YP_002731515.1 225851281 7674426 complement(1695636..1696037) 1 NC_012440.1 conserved protein YrvD 1696037 7674426 PERMA_1751 Persephonella marina EX-H1 conserved protein YrvD YP_002731515.1 1695636 R 123214 CDS YP_002731516.1 225851282 7675878 complement(1696027..1696530) 1 NC_012440.1 identified by match to protein family HMM PF01230; histidine triad 1696530 7675878 PERMA_1752 Persephonella marina EX-H1 histidine triad YP_002731516.1 1696027 R 123214 CDS YP_002731517.1 225851283 7674530 complement(1696540..1698618) 1 NC_012440.1 identified by match to protein family HMM TIGR00595; primosomal protein N' 1698618 7674530 PERMA_1753 Persephonella marina EX-H1 primosomal protein N' YP_002731517.1 1696540 R 123214 CDS YP_002731518.1 225851284 7675132 complement(1698622..1699155) 1 NC_012440.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 1699155 hslV 7675132 hslV Persephonella marina EX-H1 ATP-dependent protease peptidase subunit YP_002731518.1 1698622 R 123214 CDS YP_002731519.1 225851285 7674377 complement(1699142..1699741) 1 NC_012440.1 identified by match to protein family HMM PF00877; gamma-DL-glutamyl hydrolase (Poly-gamma-glutamate depolymerase) (PGA depolymerase) 1699741 7674377 PERMA_1755 Persephonella marina EX-H1 gamma-DL-glutamyl hydrolase (Poly-gamma-glutamate depolymerase) (PGA depolymerase) YP_002731519.1 1699142 R 123214 CDS YP_002731520.1 225851286 7674496 1699823..1700281 1 NC_012440.1 identified by match to protein family HMM PF03602; hypothetical protein 1700281 7674496 PERMA_1756 Persephonella marina EX-H1 hypothetical protein YP_002731520.1 1699823 D 123214 CDS YP_002731521.1 225851287 7674541 1700278..1700763 1 NC_012440.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01510; pantetheine-phosphate adenylyltransferase 1700763 coaD 7674541 coaD Persephonella marina EX-H1 pantetheine-phosphate adenylyltransferase YP_002731521.1 1700278 D 123214 CDS YP_002731522.1 225851288 7674458 1700793..1701260 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1701260 7674458 PERMA_1758 Persephonella marina EX-H1 hypothetical protein YP_002731522.1 1700793 D 123214 CDS YP_002731523.1 225851289 7675811 1701260..1702258 1 NC_012440.1 identified by match to protein family HMM PF06144; match to protein family HMM TIGR01128; DNA polymerase III, deltsubunit A 1702258 holA 7675811 holA Persephonella marina EX-H1 DNA polymerase III, deltsubunit A YP_002731523.1 1701260 D 123214 CDS YP_002731524.1 225851290 7674830 1702258..1703223 1 NC_012440.1 identified by match to protein family HMM PF00004; match to protein family HMM PF00308; match to protein family HMM PF05491; match to protein family HMM PF05496; match to protein family HMM PF07728; match to protein family HMM TIGR00635; holliday junction DNA helicase RuvB 1703223 ruvB 7674830 ruvB Persephonella marina EX-H1 holliday junction DNA helicase RuvB YP_002731524.1 1702258 D 123214 CDS YP_002731525.1 225851291 7675191 1703298..1704239 1 NC_012440.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 1704239 nadA 7675191 nadA Persephonella marina EX-H1 quinolinate synthetase YP_002731525.1 1703298 D 123214 CDS YP_002731526.1 225851292 7675343 complement(1704286..1704636) 1 NC_012440.1 identified by match to protein family HMM PF00581; uba/thif-type NAD/fad binding fold protein 1704636 7675343 PERMA_1762 Persephonella marina EX-H1 uba/thif-type NAD/fad binding fold protein YP_002731526.1 1704286 R 123214 CDS YP_002731527.1 225851293 7675566 1704814..1706217 1 NC_012440.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913; D-lactate dehydrogenase 1706217 7675566 PERMA_1763 Persephonella marina EX-H1 D-lactate dehydrogenase YP_002731527.1 1704814 D 123214 CDS YP_002731528.1 225851294 7674913 1706294..1707094 1 NC_012440.1 identified by match to protein family HMM PF01881; match to protein family HMM TIGR01877; CRISPR-associated protein Cas6 1707094 cas_5 7674913 cas_5 Persephonella marina EX-H1 CRISPR-associated protein Cas6 YP_002731528.1 1706294 D 123214 CDS YP_002731529.1 225851295 7675288 complement(1707088..1708071) 1 NC_012440.1 ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3endonuclease) 1708071 7675288 PERMA_1764 Persephonella marina EX-H1 ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3endonuclease) YP_002731529.1 1707088 R 123214 CDS YP_002731530.1 225851296 7674957 1708144..1709427 1 NC_012440.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase with PAS/PAC sensor 1709427 7674957 PERMA_1767 Persephonella marina EX-H1 diguanylate cyclase with PAS/PAC sensor YP_002731530.1 1708144 D 123214 CDS YP_002731531.1 225851297 7675642 complement(1709416..1710273) 1 NC_012440.1 identified by match to protein family HMM PF04389; peptidase M28 1710273 7675642 PERMA_1766 Persephonella marina EX-H1 peptidase M28 YP_002731531.1 1709416 R 123214 CDS YP_002731532.1 225851298 7674375 1710373..1710798 1 NC_012440.1 identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481; hypothetical protein 1710798 7674375 PERMA_1769 Persephonella marina EX-H1 hypothetical protein YP_002731532.1 1710373 D 123214 CDS YP_002731533.1 225851299 7674266 complement(1710786..1711421) 1 NC_012440.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; methyltransferase, UbiE/COQ5 family 1711421 7674266 PERMA_1768 Persephonella marina EX-H1 methyltransferase, UbiE/COQ5 family YP_002731533.1 1710786 R 123214 CDS YP_002731534.1 225851300 7675161 complement(1711423..1714188) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1714188 7675161 PERMA_1770 Persephonella marina EX-H1 hypothetical protein YP_002731534.1 1711423 R 123214 CDS YP_002731535.1 225851301 7675638 complement(1714983..1717412) 1 NC_012440.1 identified by match to protein family HMM TIGR01760; phage-related membrane protein 1717412 7675638 PERMA_1772 Persephonella marina EX-H1 phage-related membrane protein YP_002731535.1 1714983 R 123214 CDS YP_002731536.1 225851302 7675282 complement(1717412..1717933) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1717933 7675282 PERMA_1773 Persephonella marina EX-H1 hypothetical protein YP_002731536.1 1717412 R 123214 CDS YP_002731537.1 225851303 7675261 complement(1717933..1719192) 1 NC_012440.1 hypothetical protein 1719192 7675261 PERMA_1774 Persephonella marina EX-H1 hypothetical protein YP_002731537.1 1717933 R 123214 CDS YP_002731538.1 225851304 7674340 1719555..1719698 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1719698 7674340 PERMA_1776 Persephonella marina EX-H1 hypothetical protein YP_002731538.1 1719555 D 123214 CDS YP_002731539.1 225851305 7674730 complement(1719669..1719938) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1719938 7674730 PERMA_1775 Persephonella marina EX-H1 hypothetical protein YP_002731539.1 1719669 R 123214 CDS YP_002731540.1 225851306 7675627 complement(1719922..1721268) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1721268 7675627 PERMA_1777 Persephonella marina EX-H1 hypothetical protein YP_002731540.1 1719922 R 123214 CDS YP_002731541.1 225851307 7675516 complement(1721261..1721572) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1721572 7675516 PERMA_1778 Persephonella marina EX-H1 hypothetical protein YP_002731541.1 1721261 R 123214 CDS YP_002731542.1 225851308 7674534 complement(1721563..1721886) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1721886 7674534 PERMA_1779 Persephonella marina EX-H1 hypothetical protein YP_002731542.1 1721563 R 123214 CDS YP_002731543.1 225851309 7674828 complement(1721923..1722888) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1722888 7674828 PERMA_1780 Persephonella marina EX-H1 hypothetical protein YP_002731543.1 1721923 R 123214 CDS YP_002731544.1 225851310 7675653 complement(1722906..1723250) 1 NC_012440.1 gifsy-2 prophage; RecA/RadA recombinase 1723250 7675653 PERMA_1781 Persephonella marina EX-H1 gifsy-2 prophage; RecA/RadA recombinase YP_002731544.1 1722906 R 123214 CDS YP_002731545.1 225851311 7674765 complement(1723265..1724143) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1724143 7674765 PERMA_1782 Persephonella marina EX-H1 hypothetical protein YP_002731545.1 1723265 R 123214 CDS YP_002731546.1 225851312 7675787 complement(1724197..1724922) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1724922 7675787 PERMA_1783 Persephonella marina EX-H1 hypothetical protein YP_002731546.1 1724197 R 123214 CDS YP_002731547.1 225851313 7676058 complement(1725059..1725616) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1725616 7676058 PERMA_1784 Persephonella marina EX-H1 hypothetical protein YP_002731547.1 1725059 R 123214 CDS YP_002731548.1 225851314 7674898 complement(1725741..1726820) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1726820 7674898 PERMA_1785 Persephonella marina EX-H1 hypothetical protein YP_002731548.1 1725741 R 123214 CDS YP_002731549.1 225851315 7675548 complement(1727009..1727179) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1727179 7675548 PERMA_1786 Persephonella marina EX-H1 hypothetical protein YP_002731549.1 1727009 R 123214 CDS YP_002731550.1 225851316 7675456 complement(1727154..1727615) 1 NC_012440.1 identified by match to protein family HMM PF09643; YopX protein 1727615 7675456 PERMA_1787 Persephonella marina EX-H1 YopX protein YP_002731550.1 1727154 R 123214 CDS YP_002731551.1 225851317 7675564 complement(1727987..1728229) 1 NC_012440.1 hypothetical protein 1728229 7675564 PERMA_1788 Persephonella marina EX-H1 hypothetical protein YP_002731551.1 1727987 R 123214 CDS YP_002731552.1 225851318 7676140 complement(1728567..1728845) 1 NC_012440.1 identified by match to protein family HMM PF00216; DNA-binding protein HU 1 (DNA-binding protein II) (HB) 1728845 7676140 PERMA_1789 Persephonella marina EX-H1 DNA-binding protein HU 1 (DNA-binding protein II) (HB) YP_002731552.1 1728567 R 123214 CDS YP_002731553.1 225851319 7675154 complement(1728950..1729588) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1729588 7675154 PERMA_1790 Persephonella marina EX-H1 hypothetical protein YP_002731553.1 1728950 R 123214 CDS YP_002731554.1 225851320 7675307 complement(1729601..1730122) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1730122 7675307 PERMA_1791 Persephonella marina EX-H1 hypothetical protein YP_002731554.1 1729601 R 123214 CDS YP_002731555.1 225851321 7675225 complement(1730119..1730661) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1730661 7675225 PERMA_1792 Persephonella marina EX-H1 hypothetical protein YP_002731555.1 1730119 R 123214 CDS YP_002731556.1 225851322 7674328 complement(1730658..1731350) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1731350 7674328 PERMA_1793 Persephonella marina EX-H1 hypothetical protein YP_002731556.1 1730658 R 123214 CDS YP_002731557.1 225851323 7675211 complement(1731352..1732806) 1 NC_012440.1 identified by match to protein family HMM PF00665; match to protein family HMM PF02796; integrase core domain protein 1732806 7675211 PERMA_1794 Persephonella marina EX-H1 integrase core domain protein YP_002731557.1 1731352 R 123214 CDS YP_002731558.1 225851324 7675465 complement(1732812..1733831) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1733831 7675465 PERMA_1795 Persephonella marina EX-H1 hypothetical protein YP_002731558.1 1732812 R 123214 CDS YP_002731559.1 225851325 7674461 complement(1734066..1734281) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1734281 7674461 PERMA_1796 Persephonella marina EX-H1 hypothetical protein YP_002731559.1 1734066 R 123214 CDS YP_002731560.1 225851326 7676022 complement(1734294..1734764) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1734764 7676022 PERMA_1797 Persephonella marina EX-H1 hypothetical protein YP_002731560.1 1734294 R 123214 CDS YP_002731561.1 225851327 7674453 1735573..1736052 1 NC_012440.1 identified by match to protein family HMM PF01381; XRE family transcriptional regulator 1736052 7674453 PERMA_1798 Persephonella marina EX-H1 XRE family transcriptional regulator YP_002731561.1 1735573 D 123214 CDS YP_002731562.1 225851328 7675905 1736079..1736588 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1736588 7675905 PERMA_1799 Persephonella marina EX-H1 hypothetical protein YP_002731562.1 1736079 D 123214 CDS YP_002731563.1 225851329 7675143 1736712..1736882 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1736882 7675143 PERMA_1800 Persephonella marina EX-H1 hypothetical protein YP_002731563.1 1736712 D 123214 CDS YP_002731564.1 225851330 7674741 1736848..1737684 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1737684 7674741 PERMA_1801 Persephonella marina EX-H1 hypothetical protein YP_002731564.1 1736848 D 123214 CDS YP_002731565.1 225851331 7674513 1737689..1738324 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1738324 7674513 PERMA_1802 Persephonella marina EX-H1 hypothetical protein YP_002731565.1 1737689 D 123214 CDS YP_002731566.1 225851332 7674357 1738345..1739388 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1739388 7674357 PERMA_1803 Persephonella marina EX-H1 hypothetical protein YP_002731566.1 1738345 D 123214 CDS YP_002731567.1 225851333 7676016 1739381..1739749 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1739749 7676016 PERMA_1804 Persephonella marina EX-H1 hypothetical protein YP_002731567.1 1739381 D 123214 CDS YP_002731568.1 225851334 7675631 1739727..1740431 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1740431 7675631 PERMA_1805 Persephonella marina EX-H1 hypothetical protein YP_002731568.1 1739727 D 123214 CDS YP_002731569.1 225851335 7674282 1740464..1741171 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1741171 7674282 PERMA_1806 Persephonella marina EX-H1 hypothetical protein YP_002731569.1 1740464 D 123214 CDS YP_002731570.1 225851336 7675166 1741173..1741565 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1741565 7675166 PERMA_1807 Persephonella marina EX-H1 hypothetical protein YP_002731570.1 1741173 D 123214 CDS YP_002731571.1 225851337 7674604 1741576..1741995 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1741995 7674604 PERMA_1808 Persephonella marina EX-H1 hypothetical protein YP_002731571.1 1741576 D 123214 CDS YP_002731572.1 225851338 7675201 1741999..1743162 1 NC_012440.1 identified by match to protein family HMM PF04865; hypothetical protein 1743162 7675201 PERMA_1809 Persephonella marina EX-H1 hypothetical protein YP_002731572.1 1741999 D 123214 CDS YP_002731573.1 225851339 7674467 1743166..1743804 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1743804 7674467 PERMA_1810 Persephonella marina EX-H1 hypothetical protein YP_002731573.1 1743166 D 123214 CDS YP_002731574.1 225851340 7675283 1743886..1744167 1 NC_012440.1 identified by match to protein family HMM PF01870; holliday junction resolvase Hjc 1744167 7675283 PERMA_1811 Persephonella marina EX-H1 holliday junction resolvase Hjc YP_002731574.1 1743886 D 123214 CDS YP_002731575.1 225851341 7674649 1744149..1744442 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1744442 7674649 PERMA_1812 Persephonella marina EX-H1 hypothetical protein YP_002731575.1 1744149 D 123214 CDS YP_002731576.1 225851342 7676014 1744426..1744719 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1744719 7676014 PERMA_1813 Persephonella marina EX-H1 hypothetical protein YP_002731576.1 1744426 D 123214 CDS YP_002731577.1 225851343 7675704 1744722..1745234 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1745234 7675704 PERMA_1814 Persephonella marina EX-H1 hypothetical protein YP_002731577.1 1744722 D 123214 CDS YP_002731578.1 225851344 7675203 1745224..1746780 1 NC_012440.1 identified by match to protein family HMM PF03237; match to protein family HMM TIGR01630; hypothetical protein 1746780 7675203 PERMA_1815 Persephonella marina EX-H1 hypothetical protein YP_002731578.1 1745224 D 123214 CDS YP_002731579.1 225851345 7674456 1746874..1747233 1 NC_012440.1 hypothetical protein 1747233 7674456 PERMA_1816 Persephonella marina EX-H1 hypothetical protein YP_002731579.1 1746874 D 123214 CDS YP_002731580.1 225851346 7674691 1747330..1747782 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1747782 7674691 PERMA_1817 Persephonella marina EX-H1 hypothetical protein YP_002731580.1 1747330 D 123214 CDS YP_002731581.1 225851347 7676108 1747779..1748078 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1748078 7676108 PERMA_1818 Persephonella marina EX-H1 hypothetical protein YP_002731581.1 1747779 D 123214 CDS YP_002731582.1 225851348 7674255 1748078..1749277 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1749277 7674255 PERMA_1819 Persephonella marina EX-H1 hypothetical protein YP_002731582.1 1748078 D 123214 CDS YP_002731583.1 225851349 7674592 1749284..1749736 1 NC_012440.1 hypothetical protein 1749736 7674592 PERMA_1820 Persephonella marina EX-H1 hypothetical protein YP_002731583.1 1749284 D 123214 CDS YP_002731584.1 225851350 7675050 1749736..1750401 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1750401 7675050 PERMA_1821 Persephonella marina EX-H1 hypothetical protein YP_002731584.1 1749736 D 123214 CDS YP_002731585.1 225851351 7674695 1750403..1750951 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1750951 7674695 PERMA_1822 Persephonella marina EX-H1 hypothetical protein YP_002731585.1 1750403 D 123214 CDS YP_002731586.1 225851352 7674894 1750964..1751878 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1751878 7674894 PERMA_1823 Persephonella marina EX-H1 hypothetical protein YP_002731586.1 1750964 D 123214 CDS YP_002731587.1 225851353 7674690 1752498..1752716 1 NC_012440.1 lysozyme (Muramidase) (Lytic enzyme) (Protein P15) 1752716 7674690 PERMA_1824 Persephonella marina EX-H1 lysozyme (Muramidase) (Lytic enzyme) (Protein P15) YP_002731587.1 1752498 D 123214 CDS YP_002731588.1 225851354 7674388 1752719..1753840 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1753840 7674388 PERMA_1825 Persephonella marina EX-H1 hypothetical protein YP_002731588.1 1752719 D 123214 CDS YP_002731589.1 225851355 7675054 1753837..1754082 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1754082 7675054 PERMA_1826 Persephonella marina EX-H1 hypothetical protein YP_002731589.1 1753837 D 123214 CDS YP_002731590.1 225851356 7675745 1754051..1754503 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1754503 7675745 PERMA_1827 Persephonella marina EX-H1 hypothetical protein YP_002731590.1 1754051 D 123214 CDS YP_002731591.1 225851357 7675635 1755174..1755755 1 NC_012440.1 identified by match to protein family HMM TIGR00441; phosphoheptose isomerase 1755755 gmhA 7675635 gmhA Persephonella marina EX-H1 phosphoheptose isomerase YP_002731591.1 1755174 D 123214 CDS YP_002731592.1 225851358 7676098 complement(1755748..1756995) 1 NC_012440.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; ATPase AAA 1756995 7676098 PERMA_1829 Persephonella marina EX-H1 ATPase AAA YP_002731592.1 1755748 R 123214 CDS YP_002731593.1 225851359 7674469 complement(1756998..1757978) 1 NC_012440.1 identified by match to protein family HMM PF00515; hypothetical protein 1757978 7674469 PERMA_1831 Persephonella marina EX-H1 hypothetical protein YP_002731593.1 1756998 R 123214 CDS YP_002731594.1 225851360 7674895 complement(1758005..1759120) 1 NC_012440.1 identified by match to protein family HMM PF07690; major facilitator superfamily MFS_1 1759120 7674895 PERMA_1832 Persephonella marina EX-H1 major facilitator superfamily MFS_1 YP_002731594.1 1758005 R 123214 CDS YP_002731595.1 225851361 7675218 1759193..1760779 1 NC_012440.1 identified by match to protein family HMM PF01935; match to protein family HMM PF09378; universally conserved protein 1760779 7675218 PERMA_1833 Persephonella marina EX-H1 universally conserved protein YP_002731595.1 1759193 D 123214 CDS YP_002731596.1 225851362 7675245 1760779..1761441 1 NC_012440.1 identified by match to protein family HMM PF00156; phosphoribosyltransferase 1761441 7675245 PERMA_1834 Persephonella marina EX-H1 phosphoribosyltransferase YP_002731596.1 1760779 D 123214 CDS YP_002731597.1 225851363 7674303 1761438..1762049 1 NC_012440.1 cytochrome c family protein 1762049 7674303 PERMA_1835 Persephonella marina EX-H1 cytochrome c family protein YP_002731597.1 1761438 D 123214 CDS YP_002731598.1 225851364 7675200 1762109..1762414 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1762414 7675200 PERMA_1836 Persephonella marina EX-H1 hypothetical protein YP_002731598.1 1762109 D 123214 CDS YP_002731599.1 225851365 7675756 complement(1762433..1762654) 1 NC_012440.1 hypothetical protein 1762654 7675756 PERMA_1837 Persephonella marina EX-H1 hypothetical protein YP_002731599.1 1762433 R 123214 CDS YP_002731600.1 225851366 7676131 1762779..1763879 1 NC_012440.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00539; oxygen-independent coproporphyrinogen III oxidase 1763879 7676131 PERMA_1838 Persephonella marina EX-H1 oxygen-independent coproporphyrinogen III oxidase YP_002731600.1 1762779 D 123214 CDS YP_002731601.1 225851367 7675504 1763975..1766086 1 NC_012440.1 cytochrome c family protein 1766086 7675504 PERMA_1839 Persephonella marina EX-H1 cytochrome c family protein YP_002731601.1 1763975 D 123214 CDS YP_002731602.1 225851368 7675572 complement(1766087..1768231) 1 NC_012440.1 identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575; DNA ligase, NAD-dependent 1768231 ligA 7675572 ligA Persephonella marina EX-H1 DNA ligase, NAD-dependent YP_002731602.1 1766087 R 123214 CDS YP_002731603.1 225851369 7676139 complement(1768236..1768895) 1 NC_012440.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 1768895 deoC 7676139 deoC Persephonella marina EX-H1 deoxyribose-phosphate aldolase YP_002731603.1 1768236 R 123214 CDS YP_002731604.1 225851370 7675652 complement(1768861..1769700) 1 NC_012440.1 identified by match to protein family HMM PF06325; match to protein family HMM PF08241; ribosomal protein L11 methyltransferase 1769700 prmA 7675652 prmA Persephonella marina EX-H1 ribosomal protein L11 methyltransferase YP_002731604.1 1768861 R 123214 CDS YP_002731605.1 225851371 7675973 complement(1769702..1770130) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1770130 7675973 PERMA_1843 Persephonella marina EX-H1 hypothetical protein YP_002731605.1 1769702 R 123214 CDS YP_002731606.1 225851372 7674297 complement(1770143..1770571) 1 NC_012440.1 identified by match to protein family HMM PF00376; transcriptional regulator 1770571 7674297 PERMA_1844 Persephonella marina EX-H1 transcriptional regulator YP_002731606.1 1770143 R 123214 CDS YP_002731607.1 225851373 7675722 complement(1770587..1771717) 1 NC_012440.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 1771717 dnaJ 7675722 dnaJ Persephonella marina EX-H1 chaperone protein DnaJ YP_002731607.1 1770587 R 123214 CDS YP_002731608.1 225851374 7674272 complement(1771789..1773078) 1 NC_012440.1 identified by match to protein family HMM PF00815; match to protein family HMM TIGR00069; histidinol dehydrogenase 1773078 hisD 7674272 hisD Persephonella marina EX-H1 histidinol dehydrogenase YP_002731608.1 1771789 R 123214 CDS YP_002731609.1 225851375 7674515 1773147..1773770 1 NC_012440.1 identified by match to protein family HMM PF02578; similar to protein aq_167; hypothetical protein 1773770 7674515 PERMA_1847 Persephonella marina EX-H1 hypothetical protein YP_002731609.1 1773147 D 123214 CDS YP_002731610.1 225851376 7675021 1773771..1774607 1 NC_012440.1 identified by match to protein family HMM TIGR00515; acetyl-CoA carboxylase, carboxyl transferase, betsubunit A 1774607 accD 7675021 accD Persephonella marina EX-H1 acetyl-CoA carboxylase, carboxyl transferase, betsubunit A YP_002731610.1 1773771 D 123214 CDS YP_002731611.1 225851377 7675675 1774609..1775106 1 NC_012440.1 identified by match to protein family HMM PF03205; match to protein family HMM TIGR00176; molybdopterin-guanine dinucleotide biosynthesis protein B 1775106 mobB 7675675 mobB Persephonella marina EX-H1 molybdopterin-guanine dinucleotide biosynthesis protein B YP_002731611.1 1774609 D 123214 CDS YP_002731612.1 225851378 7674186 1775139..1775408 1 NC_012440.1 identified by match to protein family HMM PF00708; acylphosphatase 1775408 7674186 PERMA_1850 Persephonella marina EX-H1 acylphosphatase YP_002731612.1 1775139 D 123214 CDS YP_002731613.1 225851379 7675333 1775392..1776603 1 NC_012440.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551; lipoprotein 1776603 7675333 PERMA_1851 Persephonella marina EX-H1 lipoprotein YP_002731613.1 1775392 D 123214 CDS YP_002731614.1 225851380 7675933 1776644..1777873 1 NC_012440.1 identified by match to protein family HMM PF00155; aminotransferase, class I/II 1777873 7675933 PERMA_1852 Persephonella marina EX-H1 aminotransferase, class I/II YP_002731614.1 1776644 D 123214 CDS YP_002731615.1 225851381 7674501 1777880..1778614 1 NC_012440.1 identified by match to protein family HMM PF00005; ABC transporter 1778614 7674501 PERMA_1853 Persephonella marina EX-H1 ABC transporter YP_002731615.1 1777880 D 123214 CDS YP_002731616.1 225851382 7675223 1778614..1779357 1 NC_012440.1 catalyzes the formation of pimeloyl-CoA from pimelate and coenzyme A; 6-carboxyhexanoate--CoA ligase 1779357 bioW 7675223 bioW Persephonella marina EX-H1 6-carboxyhexanoate--CoA ligase YP_002731616.1 1778614 D 123214 CDS YP_002731617.1 225851383 7675380 1779350..1779700 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1779700 7675380 PERMA_1855 Persephonella marina EX-H1 hypothetical protein YP_002731617.1 1779350 D 123214 CDS YP_002731618.1 225851384 7675931 1779690..1780361 1 NC_012440.1 carboxylesterase BioH (Biotin synthesis protein bioH) 1780361 7675931 PERMA_1856 Persephonella marina EX-H1 carboxylesterase BioH (Biotin synthesis protein bioH) YP_002731618.1 1779690 D 123214 CDS YP_002731619.1 225851385 7675369 1780398..1781099 1 NC_012440.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; methyltransferase, UbiE/COQ5 family 1781099 7675369 PERMA_1857 Persephonella marina EX-H1 methyltransferase, UbiE/COQ5 family YP_002731619.1 1780398 D 123214 CDS YP_002731620.1 225851386 7676149 1781300..1781425 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1781425 7676149 PERMA_1858 Persephonella marina EX-H1 hypothetical protein YP_002731620.1 1781300 D 123214 CDS YP_002731621.1 225851387 7675599 1781485..1781793 1 NC_012440.1 hypothetical protein 1781793 7675599 PERMA_1859 Persephonella marina EX-H1 hypothetical protein YP_002731621.1 1781485 D 123214 CDS YP_002731622.1 225851388 7675298 1781966..1782190 1 NC_012440.1 identified by match to protein family HMM PF04255; hypothetical protein 1782190 7675298 PERMA_1860 Persephonella marina EX-H1 hypothetical protein YP_002731622.1 1781966 D 123214 CDS YP_002731623.1 225851389 7675227 1782180..1782296 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1782296 7675227 PERMA_1861 Persephonella marina EX-H1 hypothetical protein YP_002731623.1 1782180 D 123214 CDS YP_002731624.1 225851390 7674783 1782635..1782844 1 NC_012440.1 hypothetical protein 1782844 7674783 PERMA_1862 Persephonella marina EX-H1 hypothetical protein YP_002731624.1 1782635 D 123214 CDS YP_002731625.1 225851391 7675921 1782841..1783209 1 NC_012440.1 identified by match to protein family HMM PF01850; PIN domain protein 1783209 7675921 PERMA_1863 Persephonella marina EX-H1 PIN domain protein YP_002731625.1 1782841 D 123214 CDS YP_002731626.1 225851392 7675418 1783372..1783596 1 NC_012440.1 identified by match to protein family HMM PF03683; hypothetical protein 1783596 7675418 PERMA_1864 Persephonella marina EX-H1 hypothetical protein YP_002731626.1 1783372 D 123214 CDS YP_002731627.1 225851393 7676115 1783819..1783998 1 NC_012440.1 hypothetical protein 1783998 7676115 PERMA_1865 Persephonella marina EX-H1 hypothetical protein YP_002731627.1 1783819 D 123214 CDS YP_002731628.1 225851394 7676128 1784053..1784286 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1784286 7676128 PERMA_1866 Persephonella marina EX-H1 hypothetical protein YP_002731628.1 1784053 D 123214 CDS YP_002731629.1 225851395 7674590 1784283..1784702 1 NC_012440.1 identified by match to protein family HMM PF01850; PIN domain protein 1784702 7674590 PERMA_1867 Persephonella marina EX-H1 PIN domain protein YP_002731629.1 1784283 D 123214 CDS YP_002731630.1 225851396 7676085 1784889..1785128 1 NC_012440.1 virulence protein 1785128 7676085 PERMA_1868 Persephonella marina EX-H1 virulence protein YP_002731630.1 1784889 D 123214 CDS YP_002731631.1 225851397 7674984 1785128..1785532 1 NC_012440.1 identified by match to protein family HMM PF01850; PilT protein domain protein 1785532 7674984 PERMA_1869 Persephonella marina EX-H1 PilT protein domain protein YP_002731631.1 1785128 D 123214 CDS YP_002731632.1 225851398 7675663 complement(1785568..1785858) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1785858 7675663 PERMA_1870 Persephonella marina EX-H1 hypothetical protein YP_002731632.1 1785568 R 123214 CDS YP_002731633.1 225851399 7674777 complement(1785866..1787137) 1 NC_012440.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase with GAF sensor 1787137 7674777 PERMA_1871 Persephonella marina EX-H1 diguanylate cyclase with GAF sensor YP_002731633.1 1785866 R 123214 CDS YP_002731634.1 225851400 7675940 1787204..1787851 1 NC_012440.1 converts methylthioribulose-1-phosphate into 2,3-diketo-5-methylthiopentyl-1-phosphate; involved in methionine salvage; methylthioribulose-1-phosphate dehydratase 1787851 mtnB 7675940 mtnB Persephonella marina EX-H1 methylthioribulose-1-phosphate dehydratase YP_002731634.1 1787204 D 123214 CDS YP_002731635.1 225851401 7675392 1787864..1788403 1 NC_012440.1 identified by match to protein family HMM PF03079; match to protein family HMM PF07883; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1788403 7675392 PERMA_1873 Persephonella marina EX-H1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase YP_002731635.1 1787864 D 123214 CDS YP_002731636.1 225851402 7674416 1788413..1789183 1 NC_012440.1 identified by match to protein family HMM PF00106; enoyl-(acyl carrier protein) reductase 1789183 7674416 PERMA_1874 Persephonella marina EX-H1 enoyl-(acyl carrier protein) reductase YP_002731636.1 1788413 D 123214 CDS YP_002731637.1 225851403 7674718 1789226..1789426 1 NC_012440.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683; thiamine biosynthesis protein ThiS 1789426 thiS 7674718 thiS Persephonella marina EX-H1 thiamine biosynthesis protein ThiS YP_002731637.1 1789226 D 123214 CDS YP_002731638.1 225851404 7675743 1789429..1790664 1 NC_012440.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1790664 hisS 7675743 hisS Persephonella marina EX-H1 histidyl-tRNA synthetase YP_002731638.1 1789429 D 123214 CDS YP_002731639.1 225851405 7675987 complement(1790658..1791068) 1 NC_012440.1 identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481; hemerythrin sipunculid 1791068 7675987 PERMA_1876 Persephonella marina EX-H1 hemerythrin sipunculid YP_002731639.1 1790658 R 123214 CDS YP_002731640.1 225851406 7675196 1791273..1792319 1 NC_012440.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1792319 tgt 7675196 tgt Persephonella marina EX-H1 queuine tRNA-ribosyltransferase YP_002731640.1 1791273 D 123214 CDS YP_002731641.1 225851407 7675133 1792360..1793034 1 NC_012440.1 identified by match to protein family HMM PF01936; hypothetical protein 1793034 7675133 PERMA_1879 Persephonella marina EX-H1 hypothetical protein YP_002731641.1 1792360 D 123214 CDS YP_002731642.1 225851408 7676092 1793031..1793951 1 NC_012440.1 identified by match to protein family HMM PF00850; histone deacetylase 14 1793951 7676092 PERMA_1880 Persephonella marina EX-H1 histone deacetylase 14 YP_002731642.1 1793031 D 123214 CDS YP_002731643.1 225851409 7675536 1793948..1795423 1 NC_012440.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01085; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptidesynt 1795423 7675536 PERMA_1882 Persephonella marina EX-H1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptidesynt YP_002731643.1 1793948 D 123214 CDS YP_002731644.1 225851410 7675750 complement(1795420..1797285) 1 NC_012440.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase/phosphodiesterase 1797285 7675750 PERMA_1881 Persephonella marina EX-H1 diguanylate cyclase/phosphodiesterase YP_002731644.1 1795420 R 123214 CDS YP_002731645.1 225851411 7675067 complement(1797287..1797667) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1797667 7675067 PERMA_1883 Persephonella marina EX-H1 hypothetical protein YP_002731645.1 1797287 R 123214 CDS YP_002731646.1 225851412 7675683 complement(1797742..1799655) 1 NC_012440.1 hypothetical protein 1799655 7675683 PERMA_1884 Persephonella marina EX-H1 hypothetical protein YP_002731646.1 1797742 R 123214 CDS YP_002731647.1 225851413 7674757 complement(1799771..1800274) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1800274 7674757 PERMA_1885 Persephonella marina EX-H1 hypothetical protein YP_002731647.1 1799771 R 123214 CDS YP_002731648.1 225851414 7674420 complement(1800288..1801493) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1801493 7674420 PERMA_1886 Persephonella marina EX-H1 hypothetical protein YP_002731648.1 1800288 R 123214 CDS YP_002731649.1 225851415 7674373 complement(1801506..1802039) 1 NC_012440.1 lipoprotein 1802039 7674373 PERMA_1887 Persephonella marina EX-H1 lipoprotein YP_002731649.1 1801506 R 123214 CDS YP_002731650.1 225851416 7675042 complement(1802036..1803772) 1 NC_012440.1 identified by match to protein family HMM PF02872; match to protein family HMM TIGR01409; 5'-nucleotidase, C- domain protein 1803772 7675042 PERMA_1888 Persephonella marina EX-H1 5'-nucleotidase, C- domain protein YP_002731650.1 1802036 R 123214 CDS YP_002731651.1 225851417 7675023 complement(1803782..1804588) 1 NC_012440.1 sulfur oxidation protein SoxA 1804588 7675023 PERMA_1889 Persephonella marina EX-H1 sulfur oxidation protein SoxA YP_002731651.1 1803782 R 123214 CDS YP_002731652.1 225851418 7675496 complement(1804604..1804933) 1 NC_012440.1 identified by match to protein family HMM PF08770; sulfur oxidation protein SoxZ 1804933 7675496 PERMA_1890 Persephonella marina EX-H1 sulfur oxidation protein SoxZ YP_002731652.1 1804604 R 123214 CDS YP_002731653.1 225851419 7674465 complement(1804960..1805418) 1 NC_012440.1 identified by match to protein family HMM TIGR01409; sulfur oxidation protein SoxY 1805418 7674465 PERMA_1891 Persephonella marina EX-H1 sulfur oxidation protein SoxY YP_002731653.1 1804960 R 123214 CDS YP_002731654.1 225851420 7674397 complement(1805431..1805883) 1 NC_012440.1 thioredoxin 1805883 7674397 PERMA_1892 Persephonella marina EX-H1 thioredoxin YP_002731654.1 1805431 R 123214 CDS YP_002731655.1 225851421 7674208 complement(1805887..1806411) 1 NC_012440.1 sulfur oxidation protein SoxX 1806411 7674208 PERMA_1893 Persephonella marina EX-H1 sulfur oxidation protein SoxX YP_002731655.1 1805887 R 123214 CDS YP_002731656.1 225851422 7675365 complement(1806607..1807941) 1 NC_012440.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) 1807941 7675365 PERMA_1894 Persephonella marina EX-H1 acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) YP_002731656.1 1806607 R 123214 CDS YP_002731657.1 225851423 7674505 1808081..1808599 1 NC_012440.1 identified by match to protein family HMM PF08754; hypothetical protein 1808599 7674505 PERMA_1895 Persephonella marina EX-H1 hypothetical protein YP_002731657.1 1808081 D 123214 CDS YP_002731658.1 225851424 7674747 1808596..1809411 1 NC_012440.1 phosphonates-binding protein 1809411 7674747 PERMA_1896 Persephonella marina EX-H1 phosphonates-binding protein YP_002731658.1 1808596 D 123214 CDS YP_002731659.1 225851425 7674648 1811019..1812809 1 NC_012440.1 identified by match to protein family HMM PF01464; transglycosylase SLT domain protein 1812809 7674648 PERMA_1898 Persephonella marina EX-H1 transglycosylase SLT domain protein YP_002731659.1 1811019 D 123214 CDS YP_002731660.1 225851426 7675065 1812812..1813450 1 NC_012440.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1813450 ribE 7675065 ribE Persephonella marina EX-H1 riboflavin synthase subunit alpha YP_002731660.1 1812812 D 123214 CDS YP_002731661.1 225851427 7674402 1813482..1814636 1 NC_012440.1 identified by match to protein family HMM PF02080; match to protein family HMM PF02254; TrkA-N domain family protein 1814636 7674402 PERMA_1900 Persephonella marina EX-H1 TrkA-N domain family protein YP_002731661.1 1813482 D 123214 CDS YP_002731662.1 225851428 7674425 1814633..1814983 1 NC_012440.1 MacA 1814983 7674425 PERMA_1902 Persephonella marina EX-H1 MacA YP_002731662.1 1814633 D 123214 CDS YP_002731663.1 225851429 7674871 complement(1814980..1816728) 1 NC_012440.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; ATP-dependent DNA ligase 1816728 7674871 PERMA_1901 Persephonella marina EX-H1 ATP-dependent DNA ligase YP_002731663.1 1814980 R 123214 CDS YP_002731664.1 225851430 7675551 1816816..1817421 1 NC_012440.1 identified by match to protein family HMM PF07992; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1817421 7675551 PERMA_1903 Persephonella marina EX-H1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_002731664.1 1816816 D 123214 CDS YP_002731665.1 225851431 7674570 complement(1817433..1818926) 1 NC_012440.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 1818926 7674570 PERMA_1904 Persephonella marina EX-H1 leucyl aminopeptidase YP_002731665.1 1817433 R 123214 CDS YP_002731666.1 225851432 7675525 1819004..1820056 1 NC_012440.1 identified by match to protein family HMM PF02797; match to protein family HMM PF08541; 3-oxoacyl-ACP synthase III 1820056 7675525 PERMA_1905 Persephonella marina EX-H1 3-oxoacyl-ACP synthase III YP_002731666.1 1819004 D 123214 CDS YP_002731667.1 225851433 7675772 1820142..1820540 1 NC_012440.1 identified by match to protein family HMM PF01880; desulfoferrodoxin, ferrous iron-binding region 1820540 7675772 PERMA_1906 Persephonella marina EX-H1 desulfoferrodoxin, ferrous iron-binding region YP_002731667.1 1820142 D 123214 CDS YP_002731668.1 225851434 7675603 1820587..1821012 1 NC_012440.1 hypothetical protein 1821012 7675603 PERMA_1908 Persephonella marina EX-H1 hypothetical protein YP_002731668.1 1820587 D 123214 CDS YP_002731669.1 225851435 7674992 complement(1821009..1822106) 1 NC_012440.1 identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD 1822106 ribD 7674992 ribD Persephonella marina EX-H1 riboflavin biosynthesis protein RibD YP_002731669.1 1821009 R 123214 CDS YP_002731670.1 225851436 7676148 1822169..1823929 1 NC_012440.1 identified by match to protein family HMM PF02811; DNA polymerase beta family 1823929 7676148 PERMA_1909 Persephonella marina EX-H1 DNA polymerase beta family YP_002731670.1 1822169 D 123214 CDS YP_002731671.1 225851437 7674392 1823945..1824343 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1824343 7674392 PERMA_1910 Persephonella marina EX-H1 hypothetical protein YP_002731671.1 1823945 D 123214 CDS YP_002731672.1 225851438 7675328 1824383..1825819 1 NC_012440.1 identified by match to protein family HMM PF00749; match to protein family HMM TIGR00464; glutamyl-tRNA synthetase 1825819 gltX 7675328 gltX Persephonella marina EX-H1 glutamyl-tRNA synthetase YP_002731672.1 1824383 D 123214 CDS YP_002731673.1 225851439 7675367 1825824..1826273 1 NC_012440.1 identified by match to protein family HMM PF00782; dual specificity protein phosphatase 1826273 7675367 PERMA_1912 Persephonella marina EX-H1 dual specificity protein phosphatase YP_002731673.1 1825824 D 123214 CDS YP_002731674.1 225851440 7675795 1826260..1826646 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1826646 7675795 PERMA_1914 Persephonella marina EX-H1 hypothetical protein YP_002731674.1 1826260 D 123214 CDS YP_002731675.1 225851441 7675276 complement(1826632..1827498) 1 NC_012440.1 hypothetical protein 1827498 7675276 PERMA_1913 Persephonella marina EX-H1 hypothetical protein YP_002731675.1 1826632 R 123214 CDS YP_002731676.1 225851442 7675561 complement(1827510..1828373) 1 NC_012440.1 identified by match to protein family HMM PF00005; spermidine/putrescine import ATP-binding protein PotA 1828373 7675561 PERMA_1915 Persephonella marina EX-H1 spermidine/putrescine import ATP-binding protein PotA YP_002731676.1 1827510 R 123214 CDS YP_002731677.1 225851443 7675900 complement(1828370..1829047) 1 NC_012440.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02141; molybdate ABC transporter permease 1829047 modB 7675900 modB Persephonella marina EX-H1 molybdate ABC transporter permease YP_002731677.1 1828370 R 123214 CDS YP_002731678.1 225851444 7674463 complement(1829047..1829451) 1 NC_012440.1 tobe domain protein 1829451 7674463 PERMA_1917 Persephonella marina EX-H1 tobe domain protein YP_002731678.1 1829047 R 123214 CDS YP_002731679.1 225851445 7675919 complement(1829438..1830205) 1 NC_012440.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256; molybdate ABC transporter substrate-binding protein 1830205 modA 7675919 modA Persephonella marina EX-H1 molybdate ABC transporter substrate-binding protein YP_002731679.1 1829438 R 123214 CDS YP_002731680.1 225851446 7674334 complement(1830256..1831041) 1 NC_012440.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03459; match to protein family HMM TIGR00637; match to protein family HMM TIGR00638; molybdenum-pterin-binding protein 1831041 7674334 PERMA_1919 Persephonella marina EX-H1 molybdenum-pterin-binding protein YP_002731680.1 1830256 R 123214 CDS YP_002731681.1 225851447 7674498 1831276..1832463 1 NC_012440.1 identified by match to protein family HMM PF01658; match to protein family HMM PF07994; myo-inositol-1-phosphate synthase 1832463 7674498 PERMA_1920 Persephonella marina EX-H1 myo-inositol-1-phosphate synthase YP_002731681.1 1831276 D 123214 CDS YP_002731682.1 225851448 7675474 1832460..1833695 1 NC_012440.1 identified by match to protein family HMM PF01066; glucose-1-phosphate thymidylyltransferase 1833695 7675474 PERMA_1921 Persephonella marina EX-H1 glucose-1-phosphate thymidylyltransferase YP_002731682.1 1832460 D 123214 CDS YP_002731683.1 225851449 7674671 1833779..1836169 1 NC_012440.1 lipoprotein 1836169 7674671 PERMA_1922 Persephonella marina EX-H1 lipoprotein YP_002731683.1 1833779 D 123214 CDS YP_002731684.1 225851450 7675914 complement(1836198..1839686) 1 NC_012440.1 identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR02169; chromosome segregation protein SMC 1839686 smc 7675914 smc Persephonella marina EX-H1 chromosome segregation protein SMC YP_002731684.1 1836198 R 123214 CDS YP_002731685.1 225851451 7675902 complement(1839744..1841300) 1 NC_012440.1 activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 1841300 7675902 PERMA_1924 Persephonella marina EX-H1 long-chain-fatty-acid--CoA ligase YP_002731685.1 1839744 R 123214 CDS YP_002731686.1 225851452 7674360 complement(1841315..1842562) 1 NC_012440.1 identified by match to protein family HMM PF03349; membrane protein 1842562 7674360 PERMA_1925 Persephonella marina EX-H1 membrane protein YP_002731686.1 1841315 R 123214 CDS YP_002731687.1 225851453 7675476 1842651..1843694 1 NC_012440.1 identified by match to protein family HMM PF00155; match to protein family HMM PF04864; match to protein family HMM TIGR01141; histidinol-phosphate transaminase 1843694 hisC_2 7675476 hisC_2 Persephonella marina EX-H1 histidinol-phosphate transaminase YP_002731687.1 1842651 D 123214 CDS YP_002731688.1 225851454 7674330 1843691..1844344 1 NC_012440.1 identified by match to protein family HMM TIGR01906; integral membrane protein 1844344 7674330 PERMA_1927 Persephonella marina EX-H1 integral membrane protein YP_002731688.1 1843691 D 123214 CDS YP_002731689.1 225851455 7675111 1844359..1846146 1 NC_012440.1 hypothetical protein 1846146 7675111 PERMA_1928 Persephonella marina EX-H1 hypothetical protein YP_002731689.1 1844359 D 123214 CDS YP_002731690.1 225851456 7674629 complement(1846148..1846681) 1 NC_012440.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1846681 pgsA_2 7674629 pgsA_2 Persephonella marina EX-H1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_002731690.1 1846148 R 123214 CDS YP_002731691.1 225851457 7675423 complement(1846668..1847123) 1 NC_012440.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02199; bifunctional protein RfaE, domain II 1847123 rfaE_2 7675423 rfaE_2 Persephonella marina EX-H1 bifunctional protein RfaE, domain II YP_002731691.1 1846668 R 123214 CDS YP_002731692.1 225851458 7675863 complement(1847125..1847490) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1847490 7675863 PERMA_1931 Persephonella marina EX-H1 hypothetical protein YP_002731692.1 1847125 R 123214 CDS YP_002731693.1 225851459 7675310 complement(1847483..1847812) 1 NC_012440.1 identified by match to protein family HMM PF00126; molybdenum-pterin-binding protein 1847812 7675310 PERMA_1932 Persephonella marina EX-H1 molybdenum-pterin-binding protein YP_002731693.1 1847483 R 123214 CDS YP_002731694.1 225851460 7674952 complement(1847827..1848606) 1 NC_012440.1 identified by match to protein family HMM PF01478; match to protein family HMM PF06750; leader peptidase PppA 1848606 7674952 PERMA_1933 Persephonella marina EX-H1 leader peptidase PppA YP_002731694.1 1847827 R 123214 CDS YP_002731695.1 225851461 7674976 complement(1848606..1848938) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1848938 7674976 PERMA_1934 Persephonella marina EX-H1 hypothetical protein YP_002731695.1 1848606 R 123214 CDS YP_002731696.1 225851462 7674946 1849864..1850433 1 NC_012440.1 hypothetical protein 1850433 7674946 PERMA_1936 Persephonella marina EX-H1 hypothetical protein YP_002731696.1 1849864 D 123214 CDS YP_002731697.1 225851463 7675468 1851065..1851544 1 NC_012440.1 hypothetical protein 1851544 7675468 PERMA_1937 Persephonella marina EX-H1 hypothetical protein YP_002731697.1 1851065 D 123214 CDS YP_002731698.1 225851464 7674300 1851568..1852170 1 NC_012440.1 hypothetical protein 1852170 7674300 PERMA_1938 Persephonella marina EX-H1 hypothetical protein YP_002731698.1 1851568 D 123214 CDS YP_002731699.1 225851465 7674918 complement(1854552..1855082) 1 NC_012440.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 1855082 ppa 7674918 ppa Persephonella marina EX-H1 inorganic pyrophosphatase YP_002731699.1 1854552 R 123214 CDS YP_002731700.1 225851466 7674943 complement(1855304..1858600) 1 NC_012440.1 identified by match to protein family HMM PF00133; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00422; valyl-tRNA synthetase 1858600 valS 7674943 valS Persephonella marina EX-H1 valyl-tRNA synthetase YP_002731700.1 1855304 R 123214 CDS YP_002731701.1 225851467 7675007 complement(1858674..1859228) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1859228 7675007 PERMA_1948 Persephonella marina EX-H1 hypothetical protein YP_002731701.1 1858674 R 123214 CDS YP_002731702.1 225851468 7675651 1859312..1859908 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1859908 7675651 PERMA_1949 Persephonella marina EX-H1 hypothetical protein YP_002731702.1 1859312 D 123214 CDS YP_002731703.1 225851469 7674220 complement(1859929..1861128) 1 NC_012440.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 1861128 argG 7674220 argG Persephonella marina EX-H1 argininosuccinate synthase YP_002731703.1 1859929 R 123214 CDS YP_002731704.1 225851470 7676069 1861196..1862233 1 NC_012440.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720; match to protein family HMM PF08238; TPR Domain containing protein 1862233 7676069 PERMA_1951 Persephonella marina EX-H1 TPR Domain containing protein YP_002731704.1 1861196 D 123214 CDS YP_002731705.1 225851471 7675390 1862300..1863322 1 NC_012440.1 identified by match to protein family HMM PF00248; aldo/keto reductase 1863322 7675390 PERMA_1952 Persephonella marina EX-H1 aldo/keto reductase YP_002731705.1 1862300 D 123214 CDS YP_002731706.1 225851472 7674508 1863391..1864710 1 NC_012440.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; hypothetical protein 1864710 7674508 PERMA_1953 Persephonella marina EX-H1 hypothetical protein YP_002731706.1 1863391 D 123214 CDS YP_002731707.1 225851473 7675909 1864707..1865294 1 NC_012440.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; Redoxin superfamily protein 1865294 7675909 PERMA_1954 Persephonella marina EX-H1 Redoxin superfamily protein YP_002731707.1 1864707 D 123214 CDS YP_002731708.1 225851474 7674446 1865296..1865550 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1865550 7674446 PERMA_1955 Persephonella marina EX-H1 hypothetical protein YP_002731708.1 1865296 D 123214 CDS YP_002731709.1 225851475 7675980 1865562..1865942 1 NC_012440.1 identified by match to protein family HMM PF00581; hypothetical protein 1865942 7675980 PERMA_1956 Persephonella marina EX-H1 hypothetical protein YP_002731709.1 1865562 D 123214 CDS YP_002731710.1 225851476 7675147 1865900..1866409 1 NC_012440.1 identified by match to protein family HMM PF01464; soluble lytic murein transglycosylase 1866409 7675147 PERMA_1957 Persephonella marina EX-H1 soluble lytic murein transglycosylase YP_002731710.1 1865900 D 123214 CDS YP_002731711.1 225851477 7675972 complement(1866417..1867604) 1 NC_012440.1 identified by match to protein family HMM PF01464; membrane-bound lytic murein transglycosylase C 1867604 7675972 PERMA_1958 Persephonella marina EX-H1 membrane-bound lytic murein transglycosylase C YP_002731711.1 1866417 R 123214 CDS YP_002731712.1 225851478 7674484 complement(1867616..1868011) 1 NC_012440.1 lipoprotein 1868011 7674484 PERMA_1959 Persephonella marina EX-H1 lipoprotein YP_002731712.1 1867616 R 123214 CDS YP_002731713.1 225851479 7675915 complement(1868052..1868639) 1 NC_012440.1 lipoprotein 1868639 7675915 PERMA_1960 Persephonella marina EX-H1 lipoprotein YP_002731713.1 1868052 R 123214 CDS YP_002731714.1 225851480 7675362 complement(1868676..1870544) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1870544 7675362 PERMA_1961 Persephonella marina EX-H1 hypothetical protein YP_002731714.1 1868676 R 123214 CDS YP_002731715.1 225851481 7674191 complement(1870560..1871759) 1 NC_012440.1 lipoprotein 1871759 7674191 PERMA_1962 Persephonella marina EX-H1 lipoprotein YP_002731715.1 1870560 R 123214 CDS YP_002731716.1 225851482 7676138 1871892..1872521 1 NC_012440.1 lipoprotein 1872521 7676138 PERMA_1964 Persephonella marina EX-H1 lipoprotein YP_002731716.1 1871892 D 123214 CDS YP_002731717.1 225851483 7674908 complement(1872494..1872955) 1 NC_012440.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; hypothetical protein 1872955 7674908 PERMA_1963 Persephonella marina EX-H1 hypothetical protein YP_002731717.1 1872494 R 123214 CDS YP_002731718.1 225851484 7675104 complement(1872959..1873930) 1 NC_012440.1 identified by match to protein family HMM PF02562; phosphate starvation-inducible protein 1873930 7675104 PERMA_1965 Persephonella marina EX-H1 phosphate starvation-inducible protein YP_002731718.1 1872959 R 123214 CDS YP_002731719.1 225851485 7675784 complement(1873986..1874495) 1 NC_012440.1 identified by match to protein family HMM PF01782; match to protein family HMM TIGR02273; 16S rRNA processing protein RimM 1874495 rimM 7675784 rimM Persephonella marina EX-H1 16S rRNA processing protein RimM YP_002731719.1 1873986 R 123214 CDS YP_002731720.1 225851486 7674812 complement(1874501..1874899) 1 NC_012440.1 identified by match to protein family HMM PF02472; biopolymer transport protein ExbD/TolR 1874899 7674812 PERMA_1967 Persephonella marina EX-H1 biopolymer transport protein ExbD/TolR YP_002731720.1 1874501 R 123214 CDS YP_002731721.1 225851487 7675836 complement(1874896..1875537) 1 NC_012440.1 identified by match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein 1875537 7675836 PERMA_1968 Persephonella marina EX-H1 MotA/TolQ/ExbB proton channel family protein YP_002731721.1 1874896 R 123214 CDS YP_002731722.1 225851488 7674811 complement(1875552..1878356) 1 NC_012440.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 1878356 7674811 PERMA_1969 Persephonella marina EX-H1 hypothetical protein YP_002731722.1 1875552 R 123214 CDS YP_002731723.1 225851489 7675115 complement(1878353..1879273) 1 NC_012440.1 identified by match to protein family HMM PF01467; match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; match to protein family HMM TIGR00125; riboflavin biosynthesis protein RibF 1879273 ribF 7675115 ribF Persephonella marina EX-H1 riboflavin biosynthesis protein RibF YP_002731723.1 1878353 R 123214 CDS YP_002731724.1 225851490 7675415 complement(1879270..1879689) 1 NC_012440.1 identified by match to protein family HMM PF02631; regulatory protein RecX 1879689 recX 7675415 recX Persephonella marina EX-H1 regulatory protein RecX YP_002731724.1 1879270 R 123214 CDS YP_002731725.1 225851491 7675595 complement(1879686..1880807) 1 NC_012440.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching mobility protein 1880807 7675595 PERMA_1972 Persephonella marina EX-H1 twitching mobility protein YP_002731725.1 1879686 R 123214 CDS YP_002731726.1 225851492 7676088 complement(1880826..1881842) 1 NC_012440.1 identified by match to protein family HMM PF00154; match to protein family HMM TIGR02012; protein RecA 1881842 recA 7676088 recA Persephonella marina EX-H1 protein RecA YP_002731726.1 1880826 R 123214 CDS YP_002731727.1 225851493 7675387 complement(1881866..1882156) 1 NC_012440.1 identified by match to protein family HMM PF02686; match to protein family HMM TIGR00135; glutamyl-tRNA(Gln) amidotransferase, C subunit 1882156 gatC 7675387 gatC Persephonella marina EX-H1 glutamyl-tRNA(Gln) amidotransferase, C subunit YP_002731727.1 1881866 R 123214 CDS YP_002731728.1 225851494 7675814 complement(1882327..1884369) 1 NC_012440.1 identified by match to protein family HMM PF01131; match to protein family HMM PF01751; match to protein family HMM TIGR01051; DNA topoisomerase I 1884369 topA 7675814 topA Persephonella marina EX-H1 DNA topoisomerase I YP_002731728.1 1882327 R 123214 CDS YP_002731729.1 225851495 7674991 complement(1884372..1885055) 1 NC_012440.1 identified by match to protein family HMM PF01507; match to protein family HMM PF06508; match to protein family HMM TIGR00364; ExsB protein 1885055 7674991 PERMA_1976 Persephonella marina EX-H1 ExsB protein YP_002731729.1 1884372 R 123214 CDS YP_002731730.1 225851496 7675354 complement(1885398..1886291) 1 NC_012440.1 identified by match to protein family HMM PF01551; peptidase, M23/M37 family 1886291 7675354 PERMA_1977 Persephonella marina EX-H1 peptidase, M23/M37 family YP_002731730.1 1885398 R 123214 CDS YP_002731731.1 225851497 7676091 complement(1886294..1887406) 1 NC_012440.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 1887406 prfB 7676091 prfB Persephonella marina EX-H1 peptide chain release factor 2 YP_002731731.1 1886294 R 123214 CDS YP_002731732.1 225851498 7675187 complement(1887485..1887874) 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1887874 7675187 PERMA_1979 Persephonella marina EX-H1 hypothetical protein YP_002731732.1 1887485 R 123214 CDS YP_002731733.1 225851499 7675429 complement(1887887..1889053) 1 NC_012440.1 identified by match to protein family HMM PF02636; hypothetical protein 1889053 7675429 PERMA_1980 Persephonella marina EX-H1 hypothetical protein YP_002731733.1 1887887 R 123214 CDS YP_002731734.1 225851500 7674493 1889112..1889420 1 NC_012440.1 nuclease 1889420 7674493 PERMA_1981 Persephonella marina EX-H1 nuclease YP_002731734.1 1889112 D 123214 CDS YP_002731735.1 225851501 7674903 1889465..1891276 1 NC_012440.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 1891276 glmS 7674903 glmS Persephonella marina EX-H1 glucosamine--fructose-6-phosphate aminotransferase YP_002731735.1 1889465 D 123214 CDS YP_002731736.1 225851502 7676137 1891507..1892667 1 NC_012440.1 identified by match to protein family HMM PF01747; match to protein family HMM TIGR00339; sulfate adenylyltransferase 1892667 sat 7676137 sat Persephonella marina EX-H1 sulfate adenylyltransferase YP_002731736.1 1891507 D 123214 CDS YP_002731737.1 225851503 7676195 1892755..1893390 1 NC_012440.1 hypothetical protein 1893390 7676195 PERMA_1984 Persephonella marina EX-H1 hypothetical protein YP_002731737.1 1892755 D 123214 CDS YP_002731738.1 225851504 7675022 1893394..1893702 1 NC_012440.1 identified by match to protein family HMM PF01909; DNA polymerase, beta domain protein region 1893702 7675022 PERMA_1985 Persephonella marina EX-H1 DNA polymerase, beta domain protein region YP_002731738.1 1893394 D 123214 CDS YP_002731739.1 225851505 7674410 1893928..1894170 1 NC_012440.1 identified by match to protein family HMM PF01909; DNA polymerase, beta domain protein region 1894170 7674410 PERMA_1986 Persephonella marina EX-H1 DNA polymerase, beta domain protein region YP_002731739.1 1893928 D 123214 CDS YP_002731740.1 225851506 7674356 1894210..1895019 1 NC_012440.1 identified by match to protein family HMM PF00459; match to protein family HMM TIGR01331; 3'(2'),5'-bisphosphate nucleotidase 1895019 cysQ 7674356 cysQ Persephonella marina EX-H1 3'(2'),5'-bisphosphate nucleotidase YP_002731740.1 1894210 D 123214 CDS YP_002731741.1 225851507 7674835 1895009..1896769 1 NC_012440.1 identified by match to protein family HMM PF02080; match to protein family HMM PF03600; match to protein family HMM PF06808; TrkA-C domain protein 1896769 7674835 PERMA_1988 Persephonella marina EX-H1 TrkA-C domain protein YP_002731741.1 1895009 D 123214 CDS YP_002731742.1 225851508 7674982 1896785..1897399 1 NC_012440.1 identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455; adenylylsulfate kinase 1897399 cysC 7674982 cysC Persephonella marina EX-H1 adenylylsulfate kinase YP_002731742.1 1896785 D 123214 CDS YP_002731743.1 225851509 7676161 1897411..1897722 1 NC_012440.1 identified by match to protein family HMM PF01909; DNA polymerase, beta domain protein region 1897722 7676161 PERMA_1990 Persephonella marina EX-H1 DNA polymerase, beta domain protein region YP_002731743.1 1897411 D 123214 CDS YP_002731744.1 225851510 7675601 1897728..1898195 1 NC_012440.1 hypothetical protein 1898195 7675601 PERMA_1991 Persephonella marina EX-H1 hypothetical protein YP_002731744.1 1897728 D 123214 CDS YP_002731745.1 225851511 7675170 1898209..1898445 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1898445 7675170 PERMA_1992 Persephonella marina EX-H1 hypothetical protein YP_002731745.1 1898209 D 123214 CDS YP_002731746.1 225851512 7674254 1898465..1899238 1 NC_012440.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR02623; glucose-1-phosphate cytidylyltransferase 1899238 rfbF 7674254 rfbF Persephonella marina EX-H1 glucose-1-phosphate cytidylyltransferase YP_002731746.1 1898465 D 123214 CDS YP_002731747.1 225851513 7675647 1899243..1900139 1 NC_012440.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; CDP-abequose synthase 1900139 7675647 PERMA_1994 Persephonella marina EX-H1 CDP-abequose synthase YP_002731747.1 1899243 D 123214 CDS YP_002731748.1 225851514 7674336 1900120..1901229 1 NC_012440.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR02622; CDP-glucose 4,6-dehydratase 1901229 rfbG 7674336 rfbG Persephonella marina EX-H1 CDP-glucose 4,6-dehydratase YP_002731748.1 1900120 D 123214 CDS YP_002731749.1 225851515 7674581 1901244..1902665 1 NC_012440.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01053; DegT/DnrJ/EryC1/StrS aminotransferase family enzyme 1902665 7674581 PERMA_1996 Persephonella marina EX-H1 DegT/DnrJ/EryC1/StrS aminotransferase family enzyme YP_002731749.1 1901244 D 123214 CDS YP_002731750.1 225851516 7675434 1902666..1903688 1 NC_012440.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; CDP-paratose 2-epimerase (CDP-tyvelose 2-epimerase) 1903688 7675434 PERMA_1997 Persephonella marina EX-H1 CDP-paratose 2-epimerase (CDP-tyvelose 2-epimerase) YP_002731750.1 1902666 D 123214 CDS YP_002731751.1 225851517 7675085 1903708..1904706 1 NC_012440.1 identified by match to protein family HMM PF00535; O antigen biosynthesis abequosyltransferase RfbV 1904706 7675085 PERMA_1998 Persephonella marina EX-H1 O antigen biosynthesis abequosyltransferase RfbV YP_002731751.1 1903708 D 123214 CDS YP_002731752.1 225851518 7675729 1904711..1905997 1 NC_012440.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; polysaccharide biosynthesis protein 1905997 7675729 PERMA_1999 Persephonella marina EX-H1 polysaccharide biosynthesis protein YP_002731752.1 1904711 D 123214 CDS YP_002731753.1 225851519 7675616 1905994..1907334 1 NC_012440.1 identified by match to protein family HMM PF04932; O-Antigen Polymerase family protein 1907334 7675616 PERMA_2000 Persephonella marina EX-H1 O-Antigen Polymerase family protein YP_002731753.1 1905994 D 123214 CDS YP_002731754.1 225851520 7676004 1907303..1908124 1 NC_012440.1 identified by match to protein family HMM PF00685; sulfotransferase 1908124 7676004 PERMA_2001 Persephonella marina EX-H1 sulfotransferase YP_002731754.1 1907303 D 123214 CDS YP_002731755.1 225851521 7674990 1908252..1909277 1 NC_012440.1 identified by match to protein family HMM PF01370; match to protein family HMM TIGR01472; GDP-mannose 4,6-dehydratase 1909277 gmd 7674990 gmd Persephonella marina EX-H1 GDP-mannose 4,6-dehydratase YP_002731755.1 1908252 D 123214 CDS YP_002731756.1 225851522 7674965 1909285..1910394 1 NC_012440.1 identified by match to protein family HMM PF00534; glycosyl transferase, group 1 1910394 7674965 PERMA_2003 Persephonella marina EX-H1 glycosyl transferase, group 1 YP_002731756.1 1909285 D 123214 CDS YP_002731757.1 225851523 7675573 1910442..1911872 1 NC_012440.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 1911872 7675573 PERMA_2004 Persephonella marina EX-H1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_002731757.1 1910442 D 123214 CDS YP_002731758.1 225851524 7676190 1911999..1912217 1 NC_012440.1 hypothetical protein 1912217 7676190 PERMA_2005 Persephonella marina EX-H1 hypothetical protein YP_002731758.1 1911999 D 123214 CDS YP_002731759.1 225851525 7675427 1912218..1912619 1 NC_012440.1 identified by match to protein family HMM PF01850; PIN 1912619 7675427 PERMA_2006 Persephonella marina EX-H1 PIN YP_002731759.1 1912218 D 123214 CDS YP_002731760.1 225851526 7674546 1912782..1913756 1 NC_012440.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase 1913756 galE 7674546 galE Persephonella marina EX-H1 UDP-glucose 4-epimerase YP_002731760.1 1912782 D 123214 CDS YP_002731761.1 225851527 7674870 1913840..1915237 1 NC_012440.1 identified by match to protein family HMM PF02397; match to protein family HMM TIGR03022; match to protein family HMM TIGR03025; UDP-phosphate galactose phosphotransferase 1915237 7674870 PERMA_2008 Persephonella marina EX-H1 UDP-phosphate galactose phosphotransferase YP_002731761.1 1913840 D 123214 CDS YP_002731762.1 225851528 7676060 1915234..1915731 1 NC_012440.1 hypothetical protein 1915731 7676060 PERMA_2009 Persephonella marina EX-H1 hypothetical protein YP_002731762.1 1915234 D 123214 CDS YP_002731763.1 225851529 7675140 1915701..1916510 1 NC_012440.1 identified by match to protein family HMM PF00753; beta-lactamase domain protein 1916510 7675140 PERMA_2010 Persephonella marina EX-H1 beta-lactamase domain protein YP_002731763.1 1915701 D 123214 CDS YP_002731764.1 225851530 7675974 1916495..1917685 1 NC_012440.1 hypothetical protein 1917685 7675974 PERMA_2011 Persephonella marina EX-H1 hypothetical protein YP_002731764.1 1916495 D 123214 CDS YP_002731765.1 225851531 7675848 complement(1917711..1918325) 1 NC_012440.1 hypothetical protein 1918325 7675848 PERMA_2012 Persephonella marina EX-H1 hypothetical protein YP_002731765.1 1917711 R 123214 CDS YP_002731766.1 225851532 7675731 1918752..1919165 1 NC_012440.1 identified by match to protein family HMM PF08780; match to protein family HMM TIGR01987; nucleotidyltransferase substrate binding protein, family 1919165 7675731 PERMA_2013 Persephonella marina EX-H1 nucleotidyltransferase substrate binding protein, family YP_002731766.1 1918752 D 123214 CDS YP_002731767.1 225851533 7676093 1919229..1919765 1 NC_012440.1 identified by match to protein family HMM PF05685; hypothetical protein 1919765 7676093 PERMA_2014 Persephonella marina EX-H1 hypothetical protein YP_002731767.1 1919229 D 123214 CDS YP_002731768.1 225851534 7674928 complement(1919916..1920401) 1 NC_012440.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1920401 folK 7674928 folK Persephonella marina EX-H1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_002731768.1 1919916 R 123214 CDS YP_002731769.1 225851535 7675117 1920420..1921703 1 NC_012440.1 identified by match to protein family HMM PF01476; match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 1921703 7675117 PERMA_2017 Persephonella marina EX-H1 ErfK/YbiS/YcfS/YnhG family protein YP_002731769.1 1920420 D 123214 CDS YP_002731770.1 225851536 7674637 complement(1921704..1922090) 1 NC_012440.1 lipoprotein 1922090 7674637 PERMA_2018 Persephonella marina EX-H1 lipoprotein YP_002731770.1 1921704 R 123214 CDS YP_002731771.1 225851537 7674556 1922224..1922760 1 NC_012440.1 identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) 1922760 7674556 PERMA_2019 Persephonella marina EX-H1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) YP_002731771.1 1922224 D 123214 CDS YP_002731772.1 225851538 7675524 1922747..1923298 1 NC_012440.1 identified by match to protein family HMM PF03848; match to protein family HMM PF08241; match to protein family HMM PF08242; tellurite resistance protein TehB 1923298 7675524 PERMA_2020 Persephonella marina EX-H1 tellurite resistance protein TehB YP_002731772.1 1922747 D 123214 CDS YP_002731773.1 225851539 7674492 1923313..1923612 1 NC_012440.1 identified by Glimmer3; hypothetical protein 1923612 7674492 PERMA_2022 Persephonella marina EX-H1 hypothetical protein YP_002731773.1 1923313 D 123214 CDS YP_002731774.1 225851540 7674618 complement(1923606..1925339) 1 NC_012440.1 identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360; competence protein 1925339 7674618 PERMA_2021 Persephonella marina EX-H1 competence protein YP_002731774.1 1923606 R 123214 CDS YP_002731775.1 225851541 7675289 complement(1925455..1926450) 1 NC_012440.1 hypothetical protein 1926450 7675289 PERMA_2023 Persephonella marina EX-H1 hypothetical protein YP_002731775.1 1925455 R 123214 CDS YP_002731776.1 225851542 7675157 complement(1926500..1927798) 1 NC_012440.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter NrgA (Membrane protein nrgA) (Protein amtB) 1927798 7675157 PERMA_2024 Persephonella marina EX-H1 ammonium transporter NrgA (Membrane protein nrgA) (Protein amtB) YP_002731776.1 1926500 R 123214 CDS YP_002731777.1 225851543 7675870 complement(1927830..1928168) 1 NC_012440.1 identified by match to protein family HMM PF00543; nitrogen regulatory protein P-II 1928168 7675870 PERMA_2025 Persephonella marina EX-H1 nitrogen regulatory protein P-II YP_002731777.1 1927830 R 123214 CDS YP_002731778.1 225851544 7674964 complement(1928394..1930031) 1 NC_012440.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 1930031 groEL 7674964 groEL Persephonella marina EX-H1 chaperonin GroEL YP_002731778.1 1928394 R 123214 CDS YP_002731779.1 225851545 7675297 complement(1930060..1930227) 1 NC_012440.1 identified by match to protein family HMM PF00166; chaperonin GroS 1930227 groS_2 7675297 groS_2 Persephonella marina EX-H1 chaperonin GroS YP_002731779.1 1930060 R 123214 CDS