-- dump date 20120504_154759 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_015455.1 47104026 2806699 317..709 1 NC_005871.1 putative sex pilus assembly and synthesis protein (TraY) 709 2806699 PBPRC0001 Photobacterium profundum SS9 putative sex pilus assembly and synthesis protein (TraY) YP_015455.1 317 D 298386 CDS YP_015456.1 47104027 2806692 complement(917..1201) 1 NC_005871.1 hypothetical protein 1201 2806692 PBPRC0002 Photobacterium profundum SS9 hypothetical protein YP_015456.1 917 R 298386 CDS YP_015457.1 47104028 2806698 1503..1775 1 NC_005871.1 hypothetical protein 1775 2806698 PBPRC0003 Photobacterium profundum SS9 hypothetical protein YP_015457.1 1503 D 298386 CDS YP_015458.1 47104029 2806702 2007..2654 1 NC_005871.1 sex pilus assembly and synthesis protein TraE 2654 2806702 PBPRC0004 Photobacterium profundum SS9 sex pilus assembly and synthesis protein TraE YP_015458.1 2007 D 298386 CDS YP_015459.1 47104030 2806697 2651..3385 1 NC_005871.1 hypothetical protein 3385 2806697 PBPRC0005 Photobacterium profundum SS9 hypothetical protein YP_015459.1 2651 D 298386 CDS YP_015460.1 47104031 2806707 3379..4848 1 NC_005871.1 putative sex pilus assembly and synthesis protein TraB 4848 2806707 PBPRC0006 Photobacterium profundum SS9 putative sex pilus assembly and synthesis protein TraB YP_015460.1 3379 D 298386 CDS YP_015461.1 47104032 2806689 4860..5255 1 NC_005871.1 hypothetical protein 5255 2806689 PBPRC0007 Photobacterium profundum SS9 hypothetical protein YP_015461.1 4860 D 298386 CDS YP_015462.1 47104033 2806654 5259..7847 1 NC_005871.1 putative sex pilus assembly and synthesis protein TraC 7847 2806654 PBPRC0008 Photobacterium profundum SS9 putative sex pilus assembly and synthesis protein TraC YP_015462.1 5259 D 298386 CDS YP_015463.1 47104034 2806653 complement(7943..8359) 1 NC_005871.1 hypothetical protein 8359 2806653 PBPRC0009 Photobacterium profundum SS9 hypothetical protein YP_015463.1 7943 R 298386 CDS YP_015464.1 47104035 2806645 8406..9104 1 NC_005871.1 sex pilus assembly and synthesis protein TraW 9104 2806645 PBPRC0010 Photobacterium profundum SS9 sex pilus assembly and synthesis protein TraW YP_015464.1 8406 D 298386 CDS YP_015465.1 47104036 2806690 9108..10112 1 NC_005871.1 putative sex pilus assembly and synthesis protein TraU 10112 2806690 PBPRC0011 Photobacterium profundum SS9 putative sex pilus assembly and synthesis protein TraU YP_015465.1 9108 D 298386 CDS YP_015466.1 47104037 2806660 10303..11007 1 NC_005871.1 conjugative transfer protein TrbC 11007 2806660 PBPRC0012 Photobacterium profundum SS9 conjugative transfer protein TrbC YP_015466.1 10303 D 298386 CDS YP_015467.1 47104038 2806652 11009..12811 1 NC_005871.1 TraN; TrhN; involved in stabilizing mating pairs during plasmid conjugation; F plasmid TraN appears to recognize OmpA in the recipient cell; conjugal transfer mating pair stabilization protein TraN 12811 2806652 PBPRC0013 Photobacterium profundum SS9 conjugal transfer mating pair stabilization protein TraN YP_015467.1 11009 D 298386 CDS YP_015468.1 47104039 2806643 12808..13599 1 NC_005871.1 sex pilus assembly and synthesis protein TraF 13599 2806643 PBPRC0014 Photobacterium profundum SS9 sex pilus assembly and synthesis protein TraF YP_015468.1 12808 D 298386 CDS YP_015469.1 47104040 2806644 13611..14051 1 NC_005871.1 putative thiol-disulfide isomerase 14051 2806644 PBPRC0015 Photobacterium profundum SS9 putative thiol-disulfide isomerase YP_015469.1 13611 D 298386 CDS YP_015470.1 47104041 2806641 15384..18218 1 NC_005871.1 putative sex pilus assembly and mating pair TraG 18218 2806641 PBPRC0016 Photobacterium profundum SS9 putative sex pilus assembly and mating pair TraG YP_015470.1 15384 D 298386 CDS YP_015471.1 47104042 2806701 complement(18222..18701) 1 NC_005871.1 hypothetical protein 18701 2806701 PBPRC0017 Photobacterium profundum SS9 hypothetical protein YP_015471.1 18222 R 298386 CDS YP_015472.1 47104043 2806685 18779..19150 1 NC_005871.1 hypothetical protein 19150 2806685 PBPRC0018 Photobacterium profundum SS9 hypothetical protein YP_015472.1 18779 D 298386 CDS YP_015473.1 47104044 2806674 19147..21252 1 NC_005871.1 conjugative transfer protein TraD 21252 2806674 PBPRC0019 Photobacterium profundum SS9 conjugative transfer protein TraD YP_015473.1 19147 D 298386 CDS YP_015474.1 47104045 2806665 21670..22164 1 NC_005871.1 hypothetical protein 22164 2806665 PBPRC0020 Photobacterium profundum SS9 hypothetical protein YP_015474.1 21670 D 298386 CDS YP_015475.1 47104046 2806693 complement(22182..23342) 1 NC_005871.1 hypothetical protein 23342 2806693 PBPRC0021 Photobacterium profundum SS9 hypothetical protein YP_015475.1 22182 R 298386 CDS YP_015476.1 47104047 2806681 23492..29434 1 NC_005871.1 DNA helicase TraI 29434 2806681 PBPRC0022 Photobacterium profundum SS9 DNA helicase TraI YP_015476.1 23492 D 298386 CDS YP_015477.1 47104048 2806663 complement(29463..29849) 1 NC_005871.1 hypothetical protein 29849 2806663 PBPRC0023 Photobacterium profundum SS9 hypothetical protein YP_015477.1 29463 R 298386 CDS YP_015478.1 47104049 2806658 complement(30909..31367) 1 NC_005871.1 hypothetical protein 31367 2806658 PBPRC0024 Photobacterium profundum SS9 hypothetical protein YP_015478.1 30909 R 298386 CDS YP_015479.1 47104050 2806647 complement(31938..32915) 1 NC_005871.1 putative antirestriction protein 32915 2806647 PBPRC0025 Photobacterium profundum SS9 putative antirestriction protein YP_015479.1 31938 R 298386 CDS YP_015480.1 47104051 2806679 33557..34747 1 NC_005871.1 putative partitioning protein A 34747 2806679 PBPRC0026 Photobacterium profundum SS9 putative partitioning protein A YP_015480.1 33557 D 298386 CDS YP_015481.1 47104052 2806684 34750..35835 1 NC_005871.1 putative partitioning protein B 35835 2806684 PBPRC0027 Photobacterium profundum SS9 putative partitioning protein B YP_015481.1 34750 D 298386 CDS YP_015482.1 47104053 2806673 complement(36432..36779) 1 NC_005871.1 hypothetical protein 36779 2806673 PBPRC0028 Photobacterium profundum SS9 hypothetical protein YP_015482.1 36432 R 298386 CDS YP_015483.1 47104054 2806664 complement(36895..37743) 1 NC_005871.1 putative endonuclease I 37743 2806664 PBPRC0029 Photobacterium profundum SS9 putative endonuclease I YP_015483.1 36895 R 298386 CDS YP_015484.1 47104055 2806683 complement(37791..38285) 1 NC_005871.1 hypothetical protein 38285 2806683 PBPRC0030 Photobacterium profundum SS9 hypothetical protein YP_015484.1 37791 R 298386 CDS YP_015485.1 47104056 2806687 complement(38487..39068) 1 NC_005871.1 hypothetical protein 39068 2806687 PBPRC0031 Photobacterium profundum SS9 hypothetical protein YP_015485.1 38487 R 298386 CDS YP_015486.1 47104057 2806694 complement(39908..40201) 1 NC_005871.1 hypothetical protein 40201 2806694 PBPRC0032 Photobacterium profundum SS9 hypothetical protein YP_015486.1 39908 R 298386 CDS YP_015487.1 47104058 2806651 complement(43366..43674) 1 NC_005871.1 hypothetical protein 43674 2806651 PBPRC0033 Photobacterium profundum SS9 hypothetical protein YP_015487.1 43366 R 298386 CDS YP_015488.1 47104059 2806704 complement(43683..44603) 1 NC_005871.1 hypothetical protein 44603 2806704 PBPRC0034 Photobacterium profundum SS9 hypothetical protein YP_015488.1 43683 R 298386 CDS YP_015489.1 47104060 2806648 complement(44619..46046) 1 NC_005871.1 unknown function; in E. coli this protein is regulated by BaeR, a protein involved in resistance to novobiocin and deoxycholate; hypothetical protein 46046 2806648 PBPRC0035 Photobacterium profundum SS9 hypothetical protein YP_015489.1 44619 R 298386 CDS YP_015490.1 47104061 2806672 complement(46078..46740) 1 NC_005871.1 hypothetical protein 46740 2806672 PBPRC0036 Photobacterium profundum SS9 hypothetical protein YP_015490.1 46078 R 298386 CDS YP_015491.1 47104062 2806671 complement(46753..47778) 1 NC_005871.1 hypothetical protein 47778 2806671 PBPRC0037 Photobacterium profundum SS9 hypothetical protein YP_015491.1 46753 R 298386 CDS YP_015492.1 47104063 2806642 complement(47819..48235) 1 NC_005871.1 hypothetical protein 48235 2806642 PBPRC0038 Photobacterium profundum SS9 hypothetical protein YP_015492.1 47819 R 298386 CDS YP_015493.1 47104064 2806677 complement(48251..48799) 1 NC_005871.1 hypothetical protein 48799 2806677 PBPRC0039 Photobacterium profundum SS9 hypothetical protein YP_015493.1 48251 R 298386 CDS YP_015494.1 47104065 2806657 complement(48841..51318) 1 NC_005871.1 hypothetical protein 51318 2806657 PBPRC0040 Photobacterium profundum SS9 hypothetical protein YP_015494.1 48841 R 298386 CDS YP_015495.1 47104066 2806668 51581..51868 1 NC_005871.1 hypothetical protein 51868 2806668 PBPRC0041 Photobacterium profundum SS9 hypothetical protein YP_015495.1 51581 D 298386 CDS YP_015496.1 47104067 2806700 complement(51938..52891) 1 NC_005871.1 hypothetical protein 52891 2806700 PBPRC0042 Photobacterium profundum SS9 hypothetical protein YP_015496.1 51938 R 298386 CDS YP_015497.1 47104068 2806686 54028..56025 1 NC_005871.1 putative exonuclease 56025 2806686 PBPRC0043 Photobacterium profundum SS9 putative exonuclease YP_015497.1 54028 D 298386 CDS YP_015498.1 47104069 2806659 56032..57750 1 NC_005871.1 putative helicase 57750 2806659 PBPRC0044 Photobacterium profundum SS9 putative helicase YP_015498.1 56032 D 298386 CDS YP_015499.1 47104070 2806667 complement(57943..58239) 1 NC_005871.1 hypothetical protein 58239 2806667 PBPRC0045 Photobacterium profundum SS9 hypothetical protein YP_015499.1 57943 R 298386 CDS YP_015500.1 47104071 2806705 58879..59142 1 NC_005871.1 hypothetical protein 59142 2806705 PBPRC0046 Photobacterium profundum SS9 hypothetical protein YP_015500.1 58879 D 298386 CDS YP_015501.1 47104072 2806706 complement(59286..59594) 1 NC_005871.1 hypothetical protein 59594 2806706 PBPRC0047 Photobacterium profundum SS9 hypothetical protein YP_015501.1 59286 R 298386 CDS YP_015502.1 47104073 2806680 complement(59613..59972) 1 NC_005871.1 hypothetical protein 59972 2806680 PBPRC0048 Photobacterium profundum SS9 hypothetical protein YP_015502.1 59613 R 298386 CDS YP_015503.1 47104074 2806688 61198..61812 1 NC_005871.1 putative cyclopropane fatty acid synthase 61812 2806688 PBPRC0049 Photobacterium profundum SS9 putative cyclopropane fatty acid synthase YP_015503.1 61198 D 298386 CDS YP_015504.1 47104075 2806646 complement(61899..62543) 1 NC_005871.1 putative transposase 62543 2806646 PBPRC0050 Photobacterium profundum SS9 putative transposase YP_015504.1 61899 R 298386 CDS YP_015505.1 47104076 2806649 complement(63001..63306) 1 NC_005871.1 hypothetical protein 63306 2806649 PBPRC0051 Photobacterium profundum SS9 hypothetical protein YP_015505.1 63001 R 298386 CDS YP_015506.1 47104077 2806682 63869..64501 1 NC_005871.1 resolvase family; putative site-specific recombinase 64501 2806682 PBPRC0052 Photobacterium profundum SS9 putative site-specific recombinase YP_015506.1 63869 D 298386 CDS YP_015507.1 47104078 2806676 64523..64918 1 NC_005871.1 putative transposase 64918 2806676 PBPRC0053 Photobacterium profundum SS9 putative transposase YP_015507.1 64523 D 298386 CDS YP_015508.1 47104079 2806670 complement(65355..66380) 1 NC_005871.1 hypothetical protein 66380 2806670 PBPRC0054 Photobacterium profundum SS9 hypothetical protein YP_015508.1 65355 R 298386 CDS YP_015509.1 47104080 2806695 66987..67478 1 NC_005871.1 putative transposase 67478 2806695 PBPRC0055 Photobacterium profundum SS9 putative transposase YP_015509.1 66987 D 298386 CDS YP_015510.1 47104081 2806655 complement(67811..68134) 1 NC_005871.1 hypothetical protein 68134 2806655 PBPRC0056 Photobacterium profundum SS9 hypothetical protein YP_015510.1 67811 R 298386 CDS YP_015511.1 47104082 2806656 68271..70019 1 NC_005871.1 hypothetical protein 70019 2806656 PBPRC0057 Photobacterium profundum SS9 hypothetical protein YP_015511.1 68271 D 298386 CDS YP_015512.1 47104083 2806650 complement(70380..71414) 1 NC_005871.1 hypothetical protein 71414 2806650 PBPRC0058 Photobacterium profundum SS9 hypothetical protein YP_015512.1 70380 R 298386 CDS YP_015513.1 47104084 2806678 complement(71507..72244) 1 NC_005871.1 putative transposase 72244 2806678 PBPRC0059 Photobacterium profundum SS9 putative transposase YP_015513.1 71507 R 298386 CDS YP_015514.1 47104085 2806675 72364..72777 1 NC_005871.1 hypothetical protein 72777 2806675 PBPRC0060 Photobacterium profundum SS9 hypothetical protein YP_015514.1 72364 D 298386 CDS YP_015515.1 47104086 2806666 73628..74278 1 NC_005871.1 hypothetical protein 74278 2806666 PBPRC0061 Photobacterium profundum SS9 hypothetical protein YP_015515.1 73628 D 298386 CDS YP_015516.1 47104087 2806662 74859..75119 1 NC_005871.1 hypothetical protein 75119 2806662 PBPRC0062 Photobacterium profundum SS9 hypothetical protein YP_015516.1 74859 D 298386 CDS YP_015517.1 47104088 2806691 75119..75421 1 NC_005871.1 stabilization protein ParE 75421 2806691 PBPRC0063 Photobacterium profundum SS9 stabilization protein ParE YP_015517.1 75119 D 298386 CDS YP_015518.1 47104089 2806703 75589..76602 1 NC_005871.1 KrfA; hypothetical protein 76602 2806703 PBPRC0064 Photobacterium profundum SS9 hypothetical protein YP_015518.1 75589 D 298386 CDS YP_015519.1 47104090 2806669 77016..77291 1 NC_005871.1 hypothetical protein 77291 2806669 PBPRC0065 Photobacterium profundum SS9 hypothetical protein YP_015519.1 77016 D 298386 CDS YP_015520.1 47104091 2806661 complement(77981..78874) 1 NC_005871.1 hypothetical protein 78874 2806661 PBPRC0066 Photobacterium profundum SS9 hypothetical protein YP_015520.1 77981 R 298386 CDS YP_015521.1 47104092 2806696 79373..79657 1 NC_005871.1 hypothetical protein 79657 2806696 PBPRC0067 Photobacterium profundum SS9 hypothetical protein YP_015521.1 79373 D 298386 CDS YP_128258.1 54307238 3122501 complement(139..591) 1 NC_006370.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 591 3122501 PBPRA0001 Photobacterium profundum SS9 flavodoxin YP_128258.1 139 R 298386 CDS YP_128259.1 54307239 3123947 complement(746..2113) 1 NC_006370.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 2113 trmE 3123947 trmE Photobacterium profundum SS9 tRNA modification GTPase TrmE YP_128259.1 746 R 298386 CDS YP_128260.1 54307240 3122830 complement(2254..3870) 1 NC_006370.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 3870 3122830 PBPRA0003 Photobacterium profundum SS9 inner membrane protein translocase component YidC YP_128260.1 2254 R 298386 CDS YP_128261.1 54307241 3122735 complement(4097..4453) 1 NC_006370.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 4453 rnpA 3122735 rnpA Photobacterium profundum SS9 ribonuclease P YP_128261.1 4097 R 298386 CDS YP_128262.1 54307242 3121963 complement(4752..5522) 1 NC_006370.1 amino acid ABC transporter ATP-binding protein 5522 3121963 PBPRA0005 Photobacterium profundum SS9 amino acid ABC transporter ATP-binding protein YP_128262.1 4752 R 298386 CDS YP_128263.1 54307243 3122275 complement(5519..6244) 1 NC_006370.1 amino acid ABC transporter permease 6244 3122275 PBPRA0006 Photobacterium profundum SS9 amino acid ABC transporter permease YP_128263.1 5519 R 298386 CDS YP_128264.1 54307244 3122014 complement(6296..7051) 1 NC_006370.1 amino acid ABC transporter substrate-binding protein 7051 3122014 PBPRA0007 Photobacterium profundum SS9 amino acid ABC transporter substrate-binding protein YP_128264.1 6296 R 298386 CDS YP_128265.1 54307245 3125204 7364..8788 1 NC_006370.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 8788 dnaA 3125204 dnaA Photobacterium profundum SS9 chromosome replication initiator DnaA YP_128265.1 7364 D 298386 CDS YP_128266.1 54307246 3124984 8790..9890 1 NC_006370.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 9890 3124984 PBPRA0009 Photobacterium profundum SS9 DNA polymerase III subunit beta YP_128266.1 8790 D 298386 CDS YP_128267.2 161936342 3123204 9894..10973 1 NC_006370.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 10973 recF 3123204 recF Photobacterium profundum SS9 recombination protein F YP_128267.2 9894 D 298386 CDS YP_128268.1 54307248 3123807 10993..13410 1 NC_006370.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 13410 gyrB 3123807 gyrB Photobacterium profundum SS9 DNA gyrase subunit B YP_128268.1 10993 D 298386 CDS YP_128269.1 54307249 3125402 complement(13497..15599) 1 NC_006370.1 flagellar biosynthesis protein 15599 3125402 PBPRA0012 Photobacterium profundum SS9 flagellar biosynthesis protein YP_128269.1 13497 R 298386 CDS YP_128270.1 54307250 3122400 complement(15616..16743) 1 NC_006370.1 FlhB flagellar biosynthetic protein 16743 3122400 PBPRA0013 Photobacterium profundum SS9 FlhB flagellar biosynthetic protein YP_128270.1 15616 R 298386 CDS YP_128271.1 54307251 3124852 complement(16740..17519) 1 NC_006370.1 flagellar biosynthetic protein FliR 17519 3124852 PBPRA0014 Photobacterium profundum SS9 flagellar biosynthetic protein FliR YP_128271.1 16740 R 298386 CDS YP_128272.1 54307252 3121977 complement(17523..17792) 1 NC_006370.1 flagellar biosynthetic protein 17792 3121977 PBPRA0015 Photobacterium profundum SS9 flagellar biosynthetic protein YP_128272.1 17523 R 298386 CDS YP_128273.1 54307253 3124683 complement(17795..18523) 1 NC_006370.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 18523 fliP 3124683 fliP Photobacterium profundum SS9 flagellar biosynthesis protein FliP YP_128273.1 17795 R 298386 CDS YP_128274.1 54307254 3123404 complement(18523..18876) 1 NC_006370.1 flagellar motor switch protein 18876 3123404 PBPRA0017 Photobacterium profundum SS9 flagellar motor switch protein YP_128274.1 18523 R 298386 CDS YP_128275.1 54307255 3124733 complement(18888..19778) 1 NC_006370.1 hypothetical protein 19778 3124733 PBPRA0018 Photobacterium profundum SS9 hypothetical protein YP_128275.1 18888 R 298386 CDS YP_128276.1 54307256 3124413 20484..21356 1 NC_006370.1 hypothetical protein 21356 3124413 PBPRA0019 Photobacterium profundum SS9 hypothetical protein YP_128276.1 20484 D 298386 CDS YP_128277.1 54307257 3122157 21377..22795 1 NC_006370.1 two-component response regulator 22795 3122157 PBPRA0020 Photobacterium profundum SS9 two-component response regulator YP_128277.1 21377 D 298386 CDS YP_128278.1 54307258 3124474 22816..23160 1 NC_006370.1 FliE-like hook basal body protein 23160 3124474 PBPRA0021 Photobacterium profundum SS9 FliE-like hook basal body protein YP_128278.1 22816 D 298386 CDS YP_128279.1 54307259 3124952 23174..24856 1 NC_006370.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; the Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar MS-ring protein 24856 fliF 3124952 fliF Photobacterium profundum SS9 flagellar MS-ring protein YP_128279.1 23174 D 298386 CDS YP_128280.1 54307260 3124332 24843..25850 1 NC_006370.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 25850 fliG 3124332 fliG Photobacterium profundum SS9 flagellar motor switch protein G YP_128280.1 24843 D 298386 CDS YP_128281.1 54307261 3124470 25868..26554 1 NC_006370.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 26554 fliH 3124470 fliH Photobacterium profundum SS9 flagellar assembly protein H YP_128281.1 25868 D 298386 CDS YP_128282.1 54307262 3124188 26547..27887 1 NC_006370.1 FliI, flagellum-specific ATP synthase 27887 3124188 PBPRA0025 Photobacterium profundum SS9 FliI, flagellum-specific ATP synthase YP_128282.1 26547 D 298386 CDS YP_128283.1 54307263 3125515 27987..28325 1 NC_006370.1 hypothetical protein 28325 3125515 PBPRA0026 Photobacterium profundum SS9 hypothetical protein YP_128283.1 27987 D 298386 CDS YP_128284.1 54307264 3123198 complement(28357..28737) 1 NC_006370.1 hypothetical protein 28737 3123198 PBPRA0027 Photobacterium profundum SS9 hypothetical protein YP_128284.1 28357 R 298386 CDS YP_128285.1 54307265 3122351 complement(28830..29111) 1 NC_006370.1 flagellar protein 29111 3122351 PBPRA0028 Photobacterium profundum SS9 flagellar protein YP_128285.1 28830 R 298386 CDS YP_128286.1 54307266 3122207 complement(29470..30231) 1 NC_006370.1 hypothetical protein 30231 3122207 PBPRA0029 Photobacterium profundum SS9 hypothetical protein YP_128286.1 29470 R 298386 CDS YP_128287.1 54307267 3121983 30287..30706 1 NC_006370.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar basal-body rod protein FlgB 30706 flgB 3121983 flgB Photobacterium profundum SS9 flagellar basal-body rod protein FlgB YP_128287.1 30287 D 298386 CDS YP_128288.1 54307268 3123242 30712..31128 1 NC_006370.1 flagellar basal body rod protein FlgC 31128 3123242 PBPRA0031 Photobacterium profundum SS9 flagellar basal body rod protein FlgC YP_128288.1 30712 D 298386 CDS YP_128289.1 54307269 3125529 31138..31812 1 NC_006370.1 flagellar basal body rod modification protein FlgD 31812 3125529 PBPRA0032 Photobacterium profundum SS9 flagellar basal body rod modification protein FlgD YP_128289.1 31138 D 298386 CDS YP_128290.1 54307270 3121943 31866..33284 1 NC_006370.1 flagellar hook protein FlgE 33284 3121943 PBPRA0033 Photobacterium profundum SS9 flagellar hook protein FlgE YP_128290.1 31866 D 298386 CDS YP_128291.1 54307271 3122120 33299..34033 1 NC_006370.1 FlgF flagellar basal-body rod protein 34033 3122120 PBPRA0034 Photobacterium profundum SS9 FlgF flagellar basal-body rod protein YP_128291.1 33299 D 298386 CDS YP_128292.1 54307272 3125427 34093..34878 1 NC_006370.1 FlgG flagellar basal-body rod protein 34878 3125427 PBPRA0035 Photobacterium profundum SS9 FlgG flagellar basal-body rod protein YP_128292.1 34093 D 298386 CDS YP_128293.1 54307273 3122010 35533..36657 1 NC_006370.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring biosynthesis protein FlgA 36657 flgI 3122010 flgI Photobacterium profundum SS9 flagellar basal body P-ring biosynthesis protein FlgA YP_128293.1 35533 D 298386 CDS YP_128294.1 54307274 3125497 36807..37181 1 NC_006370.1 flagellar protein 37181 3125497 PBPRA0037 Photobacterium profundum SS9 flagellar protein YP_128294.1 36807 D 298386 CDS YP_128295.1 54307275 3125324 37178..38584 1 NC_006370.1 flagellar hook-associated protein 38584 3125324 PBPRA0038 Photobacterium profundum SS9 flagellar hook-associated protein YP_128295.1 37178 D 298386 CDS YP_128296.1 54307276 3122305 38612..39526 1 NC_006370.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; in Vibrio parahaemolyticus the protein in this cluster is associated with the lateral flagella; flagellar hook-associated protein FlgL 39526 flgL 3122305 flgL Photobacterium profundum SS9 flagellar hook-associated protein FlgL YP_128296.1 38612 D 298386 CDS YP_128297.1 54307277 3124953 39582..40667 1 NC_006370.1 hypothetical protein 40667 3124953 PBPRA0040 Photobacterium profundum SS9 hypothetical protein YP_128297.1 39582 D 298386 CDS YP_128298.1 54307278 3122999 41029..42309 1 NC_006370.1 flagellin type B 42309 3122999 PBPRA0041 Photobacterium profundum SS9 flagellin type B YP_128298.1 41029 D 298386 CDS YP_128299.1 54307279 3122412 42577..44121 1 NC_006370.1 hypothetical protein 44121 3122412 PBPRA0042 Photobacterium profundum SS9 hypothetical protein YP_128299.1 42577 D 298386 CDS YP_128300.1 54307280 3124144 44142..44549 1 NC_006370.1 LafC 44549 3124144 PBPRA0043 Photobacterium profundum SS9 LafC YP_128300.1 44142 D 298386 CDS YP_128301.1 54307281 3125123 44569..44826 1 NC_006370.1 hypothetical protein 44826 3125123 PBPRA0044 Photobacterium profundum SS9 hypothetical protein YP_128301.1 44569 D 298386 CDS YP_128302.1 54307282 3125009 44839..46113 1 NC_006370.1 flagellar hook control length protein 46113 3125009 PBPRA0045 Photobacterium profundum SS9 flagellar hook control length protein YP_128302.1 44839 D 298386 CDS YP_128303.1 54307283 3124047 46134..46628 1 NC_006370.1 hypothetical protein 46628 3124047 PBPRA0046 Photobacterium profundum SS9 hypothetical protein YP_128303.1 46134 D 298386 CDS YP_128304.1 54307284 3125006 46640..47395 1 NC_006370.1 flagellar-specific transcription initiation factor sigma, LafS 47395 3125006 PBPRA0047 Photobacterium profundum SS9 flagellar-specific transcription initiation factor sigma, LafS YP_128304.1 46640 D 298386 CDS YP_128305.1 54307285 3125139 47408..48256 1 NC_006370.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 48256 3125139 PBPRA0048 Photobacterium profundum SS9 flagellar motor protein MotA YP_128305.1 47408 D 298386 CDS YP_128306.1 54307286 3125334 48263..49255 1 NC_006370.1 chemotaxis LafU protein 49255 3125334 PBPRA0049 Photobacterium profundum SS9 chemotaxis LafU protein YP_128306.1 48263 D 298386 CDS YP_128307.1 54307287 3122803 49573..50670 1 NC_006370.1 hypothetical protein 50670 3122803 PBPRA0050 Photobacterium profundum SS9 hypothetical protein YP_128307.1 49573 D 298386 CDS YP_128308.1 54307288 3122191 50663..51361 1 NC_006370.1 hypothetical protein 51361 3122191 PBPRA0051 Photobacterium profundum SS9 hypothetical protein YP_128308.1 50663 D 298386 CDS YP_128309.1 54307289 3123335 complement(51476..51781) 1 NC_006370.1 hypothetical protein 51781 3123335 PBPRA0052 Photobacterium profundum SS9 hypothetical protein YP_128309.1 51476 R 298386 CDS YP_128310.1 54307290 3124759 51829..52266 1 NC_006370.1 16kDa heat shock protein A 52266 3124759 PBPRA0053 Photobacterium profundum SS9 16kDa heat shock protein A YP_128310.1 51829 D 298386 CDS YP_128311.1 54307291 3125386 complement(52470..53720) 1 NC_006370.1 transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis; valine--pyruvate transaminase 53720 avtA 3125386 avtA Photobacterium profundum SS9 valine--pyruvate transaminase YP_128311.1 52470 R 298386 CDS YP_128312.1 54307292 3122909 complement(54008..56077) 1 NC_006370.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 56077 glyS 3122909 glyS Photobacterium profundum SS9 glycyl-tRNA synthetase subunit beta YP_128312.1 54008 R 298386 CDS YP_128313.1 54307293 3122155 complement(56087..57052) 1 NC_006370.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 57052 glyQ 3122155 glyQ Photobacterium profundum SS9 glycyl-tRNA synthetase subunit alpha YP_128313.1 56087 R 298386 CDS YP_128314.1 54307294 3123662 57289..58014 1 NC_006370.1 OmpA family protein 58014 3123662 PBPRA0057 Photobacterium profundum SS9 OmpA family protein YP_128314.1 57289 D 298386 CDS YP_128315.1 54307295 3121998 58322..58879 1 NC_006370.1 hypothetical protein 58879 3121998 PBPRA0058 Photobacterium profundum SS9 hypothetical protein YP_128315.1 58322 D 298386 CDS YP_128316.1 54307296 3122486 59018..59281 1 NC_006370.1 NADH dehydrogenase subunit II-like protein 59281 3122486 PBPRA0059 Photobacterium profundum SS9 NADH dehydrogenase subunit II-like protein YP_128316.1 59018 D 298386 CDS YP_128317.1 54307297 3122532 complement(59336..59584) 1 NC_006370.1 hypothetical protein 59584 3122532 PBPRA0060 Photobacterium profundum SS9 hypothetical protein YP_128317.1 59336 R 298386 CDS YP_128318.1 54307298 3123411 60065..61006 1 NC_006370.1 LysR family transcriptional regulator 61006 3123411 PBPRA0061 Photobacterium profundum SS9 LysR family transcriptional regulator YP_128318.1 60065 D 298386 CDS YP_128319.1 54307299 3123635 complement(61412..62482) 1 NC_006370.1 zinc-binding alcohol dehydrogenase 62482 3123635 PBPRA0062 Photobacterium profundum SS9 zinc-binding alcohol dehydrogenase YP_128319.1 61412 R 298386 CDS YP_128320.1 54307300 3122990 complement(62599..63762) 1 NC_006370.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 63762 fadA 3122990 fadA Photobacterium profundum SS9 3-ketoacyl-CoA thiolase YP_128320.1 62599 R 298386 CDS YP_128321.1 54307301 3123934 complement(63779..65941) 1 NC_006370.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha 65941 fadB 3123934 fadB Photobacterium profundum SS9 multifunctional fatty acid oxidation complex subunit alpha YP_128321.1 63779 R 298386 CDS YP_128322.1 54307302 3123615 66439..67065 1 NC_006370.1 hypothetical protein 67065 3123615 PBPRA0065 Photobacterium profundum SS9 hypothetical protein YP_128322.1 66439 D 298386 CDS YP_128323.1 54307303 3124860 67096..68553 1 NC_006370.1 potassium uptake protein TrkH 68553 3124860 PBPRA0066 Photobacterium profundum SS9 potassium uptake protein TrkH YP_128323.1 67096 D 298386 CDS YP_128324.1 54307304 3122828 68563..69087 1 NC_006370.1 catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; protoporphyrinogen oxidase 69087 hemG 3122828 hemG Photobacterium profundum SS9 protoporphyrinogen oxidase YP_128324.1 68563 D 298386 CDS YP_128325.1 54307305 3125031 complement(81181..81744) 1 NC_006370.1 transposase and inactivated derivative 81744 3125031 PBPRA0078 Photobacterium profundum SS9 transposase and inactivated derivative YP_128325.1 81181 R 298386 CDS YP_128326.1 54307306 3124054 complement(81746..82216) 1 NC_006370.1 transposase and inactivated derivative 82216 3124054 PBPRA0079 Photobacterium profundum SS9 transposase and inactivated derivative YP_128326.1 81746 R 298386 CDS YP_128327.1 54307307 3122133 82353..83369 1 NC_006370.1 transposase 83369 3122133 PBPRA0080 Photobacterium profundum SS9 transposase YP_128327.1 82353 D 298386 CDS YP_128328.1 54307308 3123999 complement(83654..84217) 1 NC_006370.1 transposase and inactivated derivative 84217 3123999 PBPRA0081 Photobacterium profundum SS9 transposase and inactivated derivative YP_128328.1 83654 R 298386 CDS YP_128329.1 54307309 3124979 complement(84219..84689) 1 NC_006370.1 transposase and inactivated derivative 84689 3124979 PBPRA0082 Photobacterium profundum SS9 transposase and inactivated derivative YP_128329.1 84219 R 298386 CDS YP_128330.1 54307310 3124076 84826..85842 1 NC_006370.1 transposase 85842 3124076 PBPRA0083 Photobacterium profundum SS9 transposase YP_128330.1 84826 D 298386 CDS YP_128331.1 54307311 3123333 complement(86129..86998) 1 NC_006370.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 86998 3123333 PBPRA0084 Photobacterium profundum SS9 DNA-binding transcriptional regulator IlvY YP_128331.1 86129 R 298386 CDS YP_128332.1 54307312 3125383 87131..88615 1 NC_006370.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 88615 3125383 PBPRA0085 Photobacterium profundum SS9 ketol-acid reductoisomerase YP_128332.1 87131 D 298386 CDS YP_128333.1 54307313 3122924 complement(88717..88983) 1 NC_006370.1 hypothetical protein 88983 3122924 PBPRA0086 Photobacterium profundum SS9 hypothetical protein YP_128333.1 88717 R 298386 CDS YP_128334.1 54307314 3121990 complement(89116..92232) 1 NC_006370.1 multidrug resistance protein 92232 3121990 PBPRA0087 Photobacterium profundum SS9 multidrug resistance protein YP_128334.1 89116 R 298386 CDS YP_128335.1 54307315 3124021 complement(92245..92757) 1 NC_006370.1 hypothetical protein 92757 3124021 PBPRA0088 Photobacterium profundum SS9 hypothetical protein YP_128335.1 92245 R 298386 CDS YP_128336.1 54307316 3125110 complement(92772..93332) 1 NC_006370.1 hypothetical protein 93332 3125110 PBPRA0089 Photobacterium profundum SS9 hypothetical protein YP_128336.1 92772 R 298386 CDS YP_128337.1 54307317 3125060 complement(93379..94005) 1 NC_006370.1 TetR family transcriptional regulator 94005 3125060 PBPRA0090 Photobacterium profundum SS9 TetR family transcriptional regulator YP_128337.1 93379 R 298386 CDS YP_128338.1 54307318 3122283 94145..96166 1 NC_006370.1 ATP-dependent DNA helicase Rep 96166 3122283 PBPRA0091 Photobacterium profundum SS9 ATP-dependent DNA helicase Rep YP_128338.1 94145 D 298386 CDS YP_128339.1 54307319 3122525 complement(96262..96672) 1 NC_006370.1 cytochrome c5 96672 3122525 PBPRA0092 Photobacterium profundum SS9 cytochrome c5 YP_128339.1 96262 R 298386 CDS YP_128340.1 54307320 3123938 98233..99951 1 NC_006370.1 peptide ABC transporter, ATP-binding protein 99951 3123938 PBPRA0098 Photobacterium profundum SS9 peptide ABC transporter, ATP-binding protein YP_128340.1 98233 D 298386 CDS YP_128341.1 54307321 3122945 100062..101621 1 NC_006370.1 peptide ABC transporter,periplasmic peptide-binding protein 101621 3122945 PBPRA0099 Photobacterium profundum SS9 peptide ABC transporter,periplasmic peptide-binding protein YP_128341.1 100062 D 298386 CDS YP_128342.1 54307322 3124757 101704..102681 1 NC_006370.1 peptide ABC transporter 102681 3124757 PBPRA0100 Photobacterium profundum SS9 peptide ABC transporter YP_128342.1 101704 D 298386 CDS YP_128343.1 54307323 3123812 102685..103626 1 NC_006370.1 peptide ABC transporter, permease protein 103626 3123812 PBPRA0101 Photobacterium profundum SS9 peptide ABC transporter, permease protein YP_128343.1 102685 D 298386 CDS YP_128344.1 54307324 3123962 complement(104006..104389) 1 NC_006370.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 104389 ccrB 3123962 ccrB Photobacterium profundum SS9 camphor resistance protein CrcB YP_128344.1 104006 R 298386 CDS YP_128345.1 54307325 3123252 104704..105984 1 NC_006370.1 hypothetical protein 105984 3123252 PBPRA0104 Photobacterium profundum SS9 hypothetical protein YP_128345.1 104704 D 298386 CDS YP_128346.1 54307326 3122939 106057..106479 1 NC_006370.1 hypothetical protein 106479 3122939 PBPRA0105 Photobacterium profundum SS9 hypothetical protein YP_128346.1 106057 D 298386 CDS YP_128347.1 54307327 3123101 106855..108777 1 NC_006370.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 108777 3123101 PBPRA0106 Photobacterium profundum SS9 thiamine biosynthesis protein ThiC YP_128347.1 106855 D 298386 CDS YP_128348.1 54307328 3123087 108777..110048 1 NC_006370.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 110048 thiE 3123087 thiE Photobacterium profundum SS9 thiamine-phosphate pyrophosphorylase YP_128348.1 108777 D 298386 CDS YP_128349.1 54307329 3124788 110035..110811 1 NC_006370.1 molybdopterin biosynthesis MoeB protein 110811 3124788 PBPRA0108 Photobacterium profundum SS9 molybdopterin biosynthesis MoeB protein YP_128349.1 110035 D 298386 CDS YP_128350.1 54307330 3125384 111057..111827 1 NC_006370.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 111827 thiG 3125384 thiG Photobacterium profundum SS9 thiazole synthase YP_128350.1 111057 D 298386 CDS YP_128351.1 54307331 3123099 111837..112949 1 NC_006370.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 112949 thiH 3123099 thiH Photobacterium profundum SS9 thiamine biosynthesis protein ThiH YP_128351.1 111837 D 298386 CDS YP_128352.1 54307332 3124780 complement(113086..114900) 1 NC_006370.1 aminopeptidase P 114900 3124780 PBPRA0111 Photobacterium profundum SS9 aminopeptidase P YP_128352.1 113086 R 298386 CDS YP_128353.1 54307333 3124459 complement(115072..116088) 1 NC_006370.1 LysR family transcriptional regulator 116088 3124459 PBPRA0112 Photobacterium profundum SS9 LysR family transcriptional regulator YP_128353.1 115072 R 298386 CDS YP_128354.1 54307334 3123377 116135..117355 1 NC_006370.1 multidrug resistance protein 117355 3123377 PBPRA0113 Photobacterium profundum SS9 multidrug resistance protein YP_128354.1 116135 D 298386 CDS YP_128355.1 54307335 3122781 complement(117455..118357) 1 NC_006370.1 hypothetical protein 118357 3122781 PBPRA0114 Photobacterium profundum SS9 hypothetical protein YP_128355.1 117455 R 298386 CDS YP_128356.1 54307336 3122951 118582..120120 1 NC_006370.1 hypothetical protein 120120 3122951 PBPRA0115 Photobacterium profundum SS9 hypothetical protein YP_128356.1 118582 D 298386 CDS YP_128357.1 54307337 3124028 120259..120951 1 NC_006370.1 ubiquinone/menaquinone biosynthesis methlytransferase UbiE 120951 3124028 PBPRA0116 Photobacterium profundum SS9 ubiquinone/menaquinone biosynthesis methlytransferase UbiE YP_128357.1 120259 D 298386 CDS YP_128358.1 54307338 3124515 120959..121570 1 NC_006370.1 hypothetical protein 121570 3124515 PBPRA0117 Photobacterium profundum SS9 hypothetical protein YP_128358.1 120959 D 298386 CDS YP_128359.1 54307339 3124433 121567..123204 1 NC_006370.1 an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; ubiquinone biosynthesis protein UbiB 123204 ubiB 3124433 ubiB Photobacterium profundum SS9 ubiquinone biosynthesis protein UbiB YP_128359.1 121567 D 298386 CDS YP_128360.1 54307340 3124239 123288..123551 1 NC_006370.1 TatA protein 123551 3124239 PBPRA0119 Photobacterium profundum SS9 TatA protein YP_128360.1 123288 D 298386 CDS YP_128361.1 54307341 3124623 123555..123893 1 NC_006370.1 mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase 123893 3124623 PBPRA0120 Photobacterium profundum SS9 sec-independent translocase YP_128361.1 123555 D 298386 CDS YP_128362.1 54307342 3123554 123905..124666 1 NC_006370.1 hypothetical protein 124666 3123554 PBPRA0121 Photobacterium profundum SS9 hypothetical protein YP_128362.1 123905 D 298386 CDS YP_128363.1 54307343 3124294 124833..125546 1 NC_006370.1 tatD gene product 125546 3124294 PBPRA0122 Photobacterium profundum SS9 tatD gene product YP_128363.1 124833 D 298386 CDS YP_128364.1 54307344 3122870 125675..126727 1 NC_006370.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 126727 3122870 PBPRA0123 Photobacterium profundum SS9 delta-aminolevulinic acid dehydratase YP_128364.1 125675 D 298386 CDS YP_128365.1 54307345 3125114 complement(126847..127722) 1 NC_006370.1 MadN protein 127722 3125114 PBPRA0124 Photobacterium profundum SS9 MadN protein YP_128365.1 126847 R 298386 CDS YP_128366.1 54307346 3122096 complement(127911..128333) 1 NC_006370.1 universal stress protein A 128333 3122096 PBPRA0125 Photobacterium profundum SS9 universal stress protein A YP_128366.1 127911 R 298386 CDS YP_128367.1 54307347 3122196 128586..129113 1 NC_006370.1 ferritin 129113 3122196 PBPRA0126 Photobacterium profundum SS9 ferritin YP_128367.1 128586 D 298386 CDS YP_128368.1 54307348 3124967 129166..129528 1 NC_006370.1 ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein UspB 129528 3124967 PBPRA0127 Photobacterium profundum SS9 universal stress protein UspB YP_128368.1 129166 D 298386 CDS YP_128369.1 54307349 3125102 129642..130739 1 NC_006370.1 hypothetical protein 130739 3125102 PBPRA0128 Photobacterium profundum SS9 hypothetical protein YP_128369.1 129642 D 298386 CDS YP_128370.1 54307350 3125305 130868..132055 1 NC_006370.1 hypothetical protein 132055 3125305 PBPRA0129 Photobacterium profundum SS9 hypothetical protein YP_128370.1 130868 D 298386 CDS YP_128371.1 54307351 3123406 132343..132858 1 NC_006370.1 hypothetical protein 132858 3123406 PBPRA0130 Photobacterium profundum SS9 hypothetical protein YP_128371.1 132343 D 298386 CDS YP_128372.1 54307352 3124994 complement(132950..133549) 1 NC_006370.1 TetR family transcriptional regulator 133549 3124994 PBPRA0131 Photobacterium profundum SS9 TetR family transcriptional regulator YP_128372.1 132950 R 298386 CDS YP_128373.1 54307353 3125162 complement(133571..135004) 1 NC_006370.1 aldehyde dehydrogenase 135004 3125162 PBPRA0132 Photobacterium profundum SS9 aldehyde dehydrogenase YP_128373.1 133571 R 298386 CDS YP_128374.1 54307354 3125057 complement(135158..135739) 1 NC_006370.1 hypothetical protein 135739 3125057 PBPRA0133 Photobacterium profundum SS9 hypothetical protein YP_128374.1 135158 R 298386 CDS YP_128375.1 54307355 3125135 complement(135850..136950) 1 NC_006370.1 hypothetical protein 136950 3125135 PBPRA0134 Photobacterium profundum SS9 hypothetical protein YP_128375.1 135850 R 298386 CDS YP_128376.1 54307356 3123584 136978..137469 1 NC_006370.1 hypothetical protein 137469 3123584 PBPRA0135 Photobacterium profundum SS9 hypothetical protein YP_128376.1 136978 D 298386 CDS YP_128377.1 54307357 3125281 complement(137550..138383) 1 NC_006370.1 hypothetical protein 138383 3125281 PBPRA0136 Photobacterium profundum SS9 hypothetical protein YP_128377.1 137550 R 298386 CDS YP_128378.1 54307358 3125231 complement(138484..139488) 1 NC_006370.1 lysophospholipase 139488 3125231 PBPRA0137 Photobacterium profundum SS9 lysophospholipase YP_128378.1 138484 R 298386 CDS YP_128379.1 54307359 3125337 139760..140377 1 NC_006370.1 homoserine/homoserine lactone efflux protein 140377 rhtB 3125337 rhtB Photobacterium profundum SS9 homoserine/homoserine lactone efflux protein YP_128379.1 139760 D 298386 CDS YP_128380.1 54307360 3123763 140419..141633 1 NC_006370.1 hypothetical protein 141633 3123763 PBPRA0139 Photobacterium profundum SS9 hypothetical protein YP_128380.1 140419 D 298386 CDS YP_128381.1 54307361 3123055 complement(141644..142528) 1 NC_006370.1 hypothetical protein 142528 3123055 PBPRA0140 Photobacterium profundum SS9 hypothetical protein YP_128381.1 141644 R 298386 CDS YP_128382.1 54307362 3124037 complement(142627..143508) 1 NC_006370.1 LysR family transcriptional regulator 143508 3124037 PBPRA0141 Photobacterium profundum SS9 LysR family transcriptional regulator YP_128382.1 142627 R 298386 CDS YP_128383.1 54307363 3123777 complement(143705..145306) 1 NC_006370.1 efflux pump component MtrF 145306 3123777 PBPRA0142 Photobacterium profundum SS9 efflux pump component MtrF YP_128383.1 143705 R 298386 CDS YP_128384.1 54307364 3122831 145831..146553 1 NC_006370.1 oxidoreductase 146553 3122831 PBPRA0143 Photobacterium profundum SS9 oxidoreductase YP_128384.1 145831 D 298386 CDS YP_128385.1 54307365 3124784 146708..147712 1 NC_006370.1 hypothetical protein 147712 3124784 PBPRA0144 Photobacterium profundum SS9 hypothetical protein YP_128385.1 146708 D 298386 CDS YP_128386.1 54307366 3124668 complement(147790..148122) 1 NC_006370.1 hypothetical protein 148122 3124668 PBPRA0145 Photobacterium profundum SS9 hypothetical protein YP_128386.1 147790 R 298386 CDS YP_128387.1 54307367 3122635 148479..148844 1 NC_006370.1 hypothetical protein 148844 3122635 PBPRA0146 Photobacterium profundum SS9 hypothetical protein YP_128387.1 148479 D 298386 CDS YP_128388.1 54307368 3123363 150100..150774 1 NC_006370.1 hypothetical protein 150774 3123363 PBPRA0147 Photobacterium profundum SS9 hypothetical protein YP_128388.1 150100 D 298386 CDS YP_128389.1 54307369 3124201 151155..151466 1 NC_006370.1 hypothetical protein 151466 3124201 PBPRA0148 Photobacterium profundum SS9 hypothetical protein YP_128389.1 151155 D 298386 CDS YP_128390.1 54307370 3125194 151588..151830 1 NC_006370.1 hypothetical protein 151830 3125194 PBPRA0149 Photobacterium profundum SS9 hypothetical protein YP_128390.1 151588 D 298386 CDS YP_128391.1 54307371 3125105 151996..152589 1 NC_006370.1 hypothetical protein 152589 3125105 PBPRA0150 Photobacterium profundum SS9 hypothetical protein YP_128391.1 151996 D 298386 CDS YP_128392.1 54307372 3125301 complement(152677..152943) 1 NC_006370.1 hypothetical protein 152943 3125301 PBPRA0151 Photobacterium profundum SS9 hypothetical protein YP_128392.1 152677 R 298386 CDS YP_128393.1 54307373 3124864 complement(152940..153545) 1 NC_006370.1 hypothetical protein 153545 3124864 PBPRA0152 Photobacterium profundum SS9 hypothetical protein YP_128393.1 152940 R 298386 CDS YP_128394.1 54307374 3125027 153630..154913 1 NC_006370.1 cell division protein FtsY 154913 3125027 PBPRA0153 Photobacterium profundum SS9 cell division protein FtsY YP_128394.1 153630 D 298386 CDS YP_128395.1 54307375 3125276 155569..156501 1 NC_006370.1 cell division protein FtsX 156501 3125276 PBPRA0154 Photobacterium profundum SS9 cell division protein FtsX YP_128395.1 155569 D 298386 CDS YP_128396.1 54307376 3123122 156677..157525 1 NC_006370.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 157525 3123122 PBPRA0155 Photobacterium profundum SS9 RNA polymerase factor sigma-32 YP_128396.1 156677 D 298386 CDS YP_128397.1 54307377 3124917 158146..158478 1 NC_006370.1 belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase 158478 glpE 3124917 glpE Photobacterium profundum SS9 thiosulfate sulfurtransferase YP_128397.1 158146 D 298386 CDS YP_128398.1 54307378 3124489 158520..159362 1 NC_006370.1 hypothetical protein 159362 3124489 PBPRA0157 Photobacterium profundum SS9 hypothetical protein YP_128398.1 158520 D 298386 CDS YP_128399.1 54307379 3122367 159736..161106 1 NC_006370.1 catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; sn-glycerol-3-phosphate transporter 161106 glpT 3122367 glpT Photobacterium profundum SS9 sn-glycerol-3-phosphate transporter YP_128399.1 159736 D 298386 CDS YP_128400.1 54307380 3122001 161204..161983 1 NC_006370.1 glycerol-3-phosphate repressor protein 161983 3122001 PBPRA0159 Photobacterium profundum SS9 glycerol-3-phosphate repressor protein YP_128400.1 161204 D 298386 CDS YP_128401.1 54307381 3123919 162247..163785 1 NC_006370.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 163785 glpD 3123919 glpD Photobacterium profundum SS9 glycerol-3-phosphate dehydrogenase YP_128401.1 162247 D 298386 CDS YP_128402.1 54307382 3124384 complement(163921..164337) 1 NC_006370.1 flagellar basal body protein FliL 164337 3124384 PBPRA0161 Photobacterium profundum SS9 flagellar basal body protein FliL YP_128402.1 163921 R 298386 CDS YP_128403.1 54307383 3124988 164506..165048 1 NC_006370.1 chorismate--pyruvate lyase 165048 3124988 PBPRA0162 Photobacterium profundum SS9 chorismate--pyruvate lyase YP_128403.1 164506 D 298386 CDS YP_128404.1 54307384 3122264 165042..165905 1 NC_006370.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 165905 ubiA 3122264 ubiA Photobacterium profundum SS9 4-hydroxybenzoate octaprenyltransferase YP_128404.1 165042 D 298386 CDS YP_128405.2 161936341 3123993 complement(166431..168860) 1 NC_006370.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 168860 3123993 PBPRA0164 Photobacterium profundum SS9 glycerol-3-phosphate acyltransferase YP_128405.2 166431 R 298386 CDS YP_128406.1 54307386 3124954 169235..169813 1 NC_006370.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 169813 3124954 PBPRA0165 Photobacterium profundum SS9 LexA repressor YP_128406.1 169235 D 298386 CDS YP_128407.1 54307387 3122936 169925..170722 1 NC_006370.1 O-methyltransferase-relateprotein 170722 3122936 PBPRA0166 Photobacterium profundum SS9 O-methyltransferase-relateprotein YP_128407.1 169925 D 298386 CDS YP_128408.1 54307388 3122151 170974..172122 1 NC_006370.1 cytochrome c oxidase, subunit II 172122 3122151 PBPRA0167 Photobacterium profundum SS9 cytochrome c oxidase, subunit II YP_128408.1 170974 D 298386 CDS YP_128409.1 54307389 3123581 172137..173801 1 NC_006370.1 cytochrome c oxidase, subunit I 173801 3123581 PBPRA0168 Photobacterium profundum SS9 cytochrome c oxidase, subunit I YP_128409.1 172137 D 298386 CDS YP_128410.1 54307390 3122345 173857..174447 1 NC_006370.1 involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 174447 3122345 PBPRA0169 Photobacterium profundum SS9 cytochrome C oxidase assembly protein YP_128410.1 173857 D 298386 CDS YP_128411.1 54307391 3123744 174467..175384 1 NC_006370.1 cytochrome c oxidase subunit III 175384 3123744 PBPRA0170 Photobacterium profundum SS9 cytochrome c oxidase subunit III YP_128411.1 174467 D 298386 CDS YP_128412.1 54307392 3123224 175699..176388 1 NC_006370.1 hypothetical protein 176388 3123224 PBPRA0171 Photobacterium profundum SS9 hypothetical protein YP_128412.1 175699 D 298386 CDS YP_128413.1 54307393 3122153 176423..176986 1 NC_006370.1 hypothetical protein 176986 3122153 PBPRA0172 Photobacterium profundum SS9 hypothetical protein YP_128413.1 176423 D 298386 CDS YP_128414.1 54307394 3121951 177044..178105 1 NC_006370.1 cytochrome c oxidase assembly protein 178105 3121951 PBPRA0173 Photobacterium profundum SS9 cytochrome c oxidase assembly protein YP_128414.1 177044 D 298386 CDS YP_128415.1 54307395 3121987 178017..179048 1 NC_006370.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 179048 3121987 PBPRA0174 Photobacterium profundum SS9 protoheme IX farnesyltransferase YP_128415.1 178017 D 298386 CDS YP_128416.1 54307396 3122145 179146..180495 1 NC_006370.1 DNA-damage-inducible protein F 180495 3122145 PBPRA0175 Photobacterium profundum SS9 DNA-damage-inducible protein F YP_128416.1 179146 D 298386 CDS YP_128417.1 54307397 3122920 180516..180983 1 NC_006370.1 hypothetical protein 180983 3122920 PBPRA0176 Photobacterium profundum SS9 hypothetical protein YP_128417.1 180516 D 298386 CDS YP_128418.2 229557969 3122248 complement(181329..181907) 1 NC_006370.1 cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; DNA uptake protein 181907 3122248 PBPRA0177 Photobacterium profundum SS9 DNA uptake protein YP_128418.2 181329 R 298386 CDS YP_128419.1 54307399 3123585 complement(182043..182756) 1 NC_006370.1 amidophosphoribosyltransferase 182756 3123585 PBPRA0178 Photobacterium profundum SS9 amidophosphoribosyltransferase YP_128419.1 182043 R 298386 CDS YP_128420.1 54307400 3122504 182815..183579 1 NC_006370.1 bioH protein 183579 3122504 PBPRA0179 Photobacterium profundum SS9 bioH protein YP_128420.1 182815 D 298386 CDS YP_128421.1 54307401 3123517 183686..184066 1 NC_006370.1 hypothetical protein 184066 3123517 PBPRA0180 Photobacterium profundum SS9 hypothetical protein YP_128421.1 183686 D 298386 CDS YP_128422.1 54307402 3123147 184158..184622 1 NC_006370.1 hypothetical protein 184622 3123147 PBPRA0181 Photobacterium profundum SS9 hypothetical protein YP_128422.1 184158 D 298386 CDS YP_128423.1 54307403 3125094 complement(184715..187093) 1 NC_006370.1 hypothetical protein 187093 3125094 PBPRA0182 Photobacterium profundum SS9 hypothetical protein YP_128423.1 184715 R 298386 CDS YP_128424.1 54307404 3123678 complement(187189..187659) 1 NC_006370.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 187659 greB 3123678 greB Photobacterium profundum SS9 transcription elongation factor GreB YP_128424.1 187189 R 298386 CDS YP_128425.1 54307405 3125354 187956..188675 1 NC_006370.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 188675 ompR 3125354 ompR Photobacterium profundum SS9 osmolarity response regulator YP_128425.1 187956 D 298386 CDS YP_128426.1 54307406 3124679 188679..190010 1 NC_006370.1 membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein 190010 envZ 3124679 envZ Photobacterium profundum SS9 osmolarity sensor protein YP_128426.1 188679 D 298386 CDS YP_128427.1 54307407 3124483 complement(190071..191450) 1 NC_006370.1 xanthine/uracil permease 191450 3124483 PBPRA0186 Photobacterium profundum SS9 xanthine/uracil permease YP_128427.1 190071 R 298386 CDS YP_128428.1 54307408 3122680 complement(191928..194021) 1 NC_006370.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 194021 3122680 PBPRA0187 Photobacterium profundum SS9 ATP-dependent DNA helicase RecG YP_128428.1 191928 R 298386 CDS YP_128429.2 161936340 3123116 complement(194046..194750) 1 NC_006370.1 specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase 194750 3123116 PBPRA0188 Photobacterium profundum SS9 tRNA guanosine-2'-O-methyltransferase YP_128429.2 194046 R 298386 CDS YP_128430.1 54307410 3123690 complement(194849..196960) 1 NC_006370.1 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 196960 3123690 PBPRA0189 Photobacterium profundum SS9 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase YP_128430.1 194849 R 298386 CDS YP_128431.1 54307411 3123597 complement(196979..197263) 1 NC_006370.1 promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 197263 rpoZ 3123597 rpoZ Photobacterium profundum SS9 DNA-directed RNA polymerase subunit omega YP_128431.1 196979 R 298386 CDS YP_128432.1 54307412 3123975 complement(197313..197939) 1 NC_006370.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 197939 gmk 3123975 gmk Photobacterium profundum SS9 guanylate kinase YP_128432.1 197313 R 298386 CDS YP_128433.1 54307413 3122937 198329..198619 1 NC_006370.1 hypothetical protein 198619 3122937 PBPRA0192 Photobacterium profundum SS9 hypothetical protein YP_128433.1 198329 D 298386 CDS YP_128434.1 54307414 3124823 198609..199934 1 NC_006370.1 hypothetical protein 199934 3124823 PBPRA0193 Photobacterium profundum SS9 hypothetical protein YP_128434.1 198609 D 298386 CDS YP_128435.1 54307415 3122499 199959..200966 1 NC_006370.1 hypothetical protein 200966 3122499 PBPRA0194 Photobacterium profundum SS9 hypothetical protein YP_128435.1 199959 D 298386 CDS YP_128436.1 54307416 3122698 201484..203283 1 NC_006370.1 hypothetical protein 203283 3122698 PBPRA0195 Photobacterium profundum SS9 hypothetical protein YP_128436.1 201484 D 298386 CDS YP_128437.1 54307417 3123921 203299..205680 1 NC_006370.1 hypothetical protein 205680 3123921 PBPRA0196 Photobacterium profundum SS9 hypothetical protein YP_128437.1 203299 D 298386 CDS YP_128438.1 54307418 3125519 complement(205871..206734) 1 NC_006370.1 hypothetical protein 206734 3125519 PBPRA0197 Photobacterium profundum SS9 hypothetical protein YP_128438.1 205871 R 298386 CDS YP_128439.1 54307419 3125319 206991..207707 1 NC_006370.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 207707 rph 3125319 rph Photobacterium profundum SS9 ribonuclease PH YP_128439.1 206991 D 298386 CDS YP_128440.1 54307420 3125007 208098..208739 1 NC_006370.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 208739 pyrE 3125007 pyrE Photobacterium profundum SS9 orotate phosphoribosyltransferase YP_128440.1 208098 D 298386 CDS YP_128441.1 54307421 3125104 complement(208898..209488) 1 NC_006370.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 209488 slmA 3125104 slmA Photobacterium profundum SS9 nucleoid occlusion protein YP_128441.1 208898 R 298386 CDS YP_128442.1 54307422 3125238 complement(209751..210992) 1 NC_006370.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 210992 3125238 PBPRA0201 Photobacterium profundum SS9 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_128442.1 209751 R 298386 CDS YP_128443.1 54307423 3124998 211238..211912 1 NC_006370.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 211912 radC 3124998 radC Photobacterium profundum SS9 DNA repair protein RadC YP_128443.1 211238 D 298386 CDS YP_128444.1 54307424 3125342 212070..212321 1 NC_006370.1 ribosomal protein L28 212321 3125342 PBPRA0203 Photobacterium profundum SS9 ribosomal protein L28 YP_128444.1 212070 D 298386 CDS YP_128445.1 54307425 3125498 212336..212503 1 NC_006370.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 212503 rpmG 3125498 rpmG Photobacterium profundum SS9 50S ribosomal protein L33 YP_128445.1 212336 D 298386 CDS YP_128446.1 54307426 3125344 212702..213193 1 NC_006370.1 hypothetical protein 213193 3125344 PBPRA0205 Photobacterium profundum SS9 hypothetical protein YP_128446.1 212702 D 298386 CDS YP_128447.1 54307427 3125511 213233..214042 1 NC_006370.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 214042 3125511 PBPRA0206 Photobacterium profundum SS9 formamidopyrimidine-DNA glycosylase YP_128447.1 213233 D 298386 CDS YP_128448.1 54307428 3122396 214187..215191 1 NC_006370.1 nucleotide sugar epimerase 215191 3122396 PBPRA0207 Photobacterium profundum SS9 nucleotide sugar epimerase YP_128448.1 214187 D 298386 CDS YP_128449.1 54307429 3125326 complement(215260..215751) 1 NC_006370.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 215751 coaD 3125326 coaD Photobacterium profundum SS9 phosphopantetheine adenylyltransferase YP_128449.1 215260 R 298386 CDS YP_128450.1 54307430 3122628 complement(215772..216824) 1 NC_006370.1 lipopolysaccharide biosynthesis protein 216824 3122628 PBPRA0209 Photobacterium profundum SS9 lipopolysaccharide biosynthesis protein YP_128450.1 215772 R 298386 CDS YP_128451.1 54307431 3122637 217087..217797 1 NC_006370.1 catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase 217797 3122637 PBPRA0210 Photobacterium profundum SS9 3-deoxy-D-manno-octulosonic-acid kinase YP_128451.1 217087 D 298386 CDS YP_128452.1 54307432 3124266 complement(217776..219065) 1 NC_006370.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 219065 3124266 PBPRA0211 Photobacterium profundum SS9 3-deoxy-D-manno-octulosonic-acid transferase YP_128452.1 217776 R 298386 CDS YP_128453.1 54307433 3123030 219177..220241 1 NC_006370.1 hypothetical protein 220241 3123030 PBPRA0212 Photobacterium profundum SS9 hypothetical protein YP_128453.1 219177 D 298386 CDS YP_128454.1 54307434 3123631 220308..221072 1 NC_006370.1 lipopolysaccharide biosynthesis glycosyltransferase 221072 3123631 PBPRA0213 Photobacterium profundum SS9 lipopolysaccharide biosynthesis glycosyltransferase YP_128454.1 220308 D 298386 CDS YP_128455.1 54307435 3124523 221099..222016 1 NC_006370.1 hypothetical protein 222016 3124523 PBPRA0214 Photobacterium profundum SS9 hypothetical protein YP_128455.1 221099 D 298386 CDS YP_128456.1 54307436 3124492 222045..223181 1 NC_006370.1 glycosyl transferase 223181 3124492 PBPRA0215 Photobacterium profundum SS9 glycosyl transferase YP_128456.1 222045 D 298386 CDS YP_128457.1 54307437 3123810 complement(223217..224293) 1 NC_006370.1 capsular polysaccharide biosynthesis protein 224293 3123810 PBPRA0216 Photobacterium profundum SS9 capsular polysaccharide biosynthesis protein YP_128457.1 223217 R 298386 CDS YP_128458.1 54307438 3124545 complement(224296..225057) 1 NC_006370.1 Lex2B protein (lipooligosaccharide 5G8 epitope biosynthesis-associated protein) 225057 3124545 PBPRA0217 Photobacterium profundum SS9 Lex2B protein (lipooligosaccharide 5G8 epitope biosynthesis-associated protein) YP_128458.1 224296 R 298386 CDS YP_128459.1 54307439 3124372 complement(225051..226169) 1 NC_006370.1 O-antigen ligase 226169 3124372 PBPRA0218 Photobacterium profundum SS9 O-antigen ligase YP_128459.1 225051 R 298386 CDS YP_128460.1 54307440 3124671 complement(226241..227194) 1 NC_006370.1 Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 227194 3124671 PBPRA0219 Photobacterium profundum SS9 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase YP_128460.1 226241 R 298386 CDS YP_128461.1 54307441 3124324 complement(227211..228155) 1 NC_006370.1 catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; ADP-L-glycero-D-manno-heptose-6-epimerase 228155 rfaD 3124324 rfaD Photobacterium profundum SS9 ADP-L-glycero-D-manno-heptose-6-epimerase YP_128461.1 227211 R 298386 CDS YP_128462.1 54307442 3124582 228275..228922 1 NC_006370.1 transcriptional regulator 228922 3124582 PBPRA0221 Photobacterium profundum SS9 transcriptional regulator YP_128462.1 228275 D 298386 CDS YP_128463.1 54307443 3123918 complement(229011..229826) 1 NC_006370.1 hypothetical protein 229826 3123918 PBPRA0222 Photobacterium profundum SS9 hypothetical protein YP_128463.1 229011 R 298386 CDS YP_128464.1 54307444 3123380 complement(230096..231268) 1 NC_006370.1 NlpD-related protein M3 family7 unassigned peptidase 231268 3123380 PBPRA0223 Photobacterium profundum SS9 NlpD-related protein M3 family7 unassigned peptidase YP_128464.1 230096 R 298386 CDS YP_128465.1 54307445 3123978 complement(231277..232833) 1 NC_006370.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 232833 3123978 PBPRA0224 Photobacterium profundum SS9 phosphoglyceromutase YP_128465.1 231277 R 298386 CDS YP_128466.1 54307446 3123983 233245..233685 1 NC_006370.1 hypothetical protein 233685 3123983 PBPRA0225 Photobacterium profundum SS9 hypothetical protein YP_128466.1 233245 D 298386 CDS YP_128467.1 54307447 3125317 233802..234275 1 NC_006370.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 234275 3125317 PBPRA0226 Photobacterium profundum SS9 preprotein translocase subunit SecB YP_128467.1 233802 D 298386 CDS YP_128468.1 54307448 3125307 234292..235308 1 NC_006370.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 235308 gpsA 3125307 gpsA Photobacterium profundum SS9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_128468.1 234292 D 298386 CDS YP_128469.1 54307449 3125256 235522..236343 1 NC_006370.1 catalyzes the O-acetylation of serine; serine acetyltransferase 236343 cysE 3125256 cysE Photobacterium profundum SS9 serine acetyltransferase YP_128469.1 235522 D 298386 CDS YP_128470.1 54307450 3124066 complement(236446..236925) 1 NC_006370.1 rRNA methylase 236925 3124066 PBPRA0229 Photobacterium profundum SS9 rRNA methylase YP_128470.1 236446 R 298386 CDS YP_128471.1 54307451 3125449 complement(237020..238387) 1 NC_006370.1 part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; two-component sensor protein 238387 cpxA 3125449 cpxA Photobacterium profundum SS9 two-component sensor protein YP_128471.1 237020 R 298386 CDS YP_128472.1 54307452 3123959 complement(238387..238875) 1 NC_006370.1 transcriptional regulator CpxR 238875 3123959 PBPRA0231 Photobacterium profundum SS9 transcriptional regulator CpxR YP_128472.1 238387 R 298386 CDS YP_128473.1 54307453 3123146 complement(238838..239083) 1 NC_006370.1 transcriptional regulator CpxR 239083 3123146 PBPRA0232 Photobacterium profundum SS9 transcriptional regulator CpxR YP_128473.1 238838 R 298386 CDS YP_128474.1 54307454 3123920 239289..239771 1 NC_006370.1 repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA; CpxP is degraded by DegP protease especially in the presence of misfolded substrates; periplasmic repressor CpxP 239771 cpxP 3123920 cpxP Photobacterium profundum SS9 periplasmic repressor CpxP YP_128474.1 239289 D 298386 CDS YP_128475.1 54307455 3122183 240156..241118 1 NC_006370.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 241118 pfkA 3122183 pfkA Photobacterium profundum SS9 6-phosphofructokinase YP_128475.1 240156 D 298386 CDS YP_128476.1 54307456 3124564 complement(241320..242108) 1 NC_006370.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 242108 tpiA 3124564 tpiA Photobacterium profundum SS9 triosephosphate isomerase YP_128476.1 241320 R 298386 CDS YP_128477.1 54307457 3125048 242441..242788 1 NC_006370.1 5-carboxymethyl-2-hydroxymuconate delta isomerase 242788 3125048 PBPRA0236 Photobacterium profundum SS9 5-carboxymethyl-2-hydroxymuconate delta isomerase YP_128477.1 242441 D 298386 CDS YP_128478.1 54307458 3122622 complement(242785..243135) 1 NC_006370.1 hypothetical protein 243135 3122622 PBPRA0237 Photobacterium profundum SS9 hypothetical protein YP_128478.1 242785 R 298386 CDS YP_128479.1 54307459 3122866 complement(243300..244058) 1 NC_006370.1 ferredoxin-NADP reductase 244058 3122866 PBPRA0238 Photobacterium profundum SS9 ferredoxin-NADP reductase YP_128479.1 243300 R 298386 CDS YP_128480.1 54307460 3122201 complement(244076..244696) 1 NC_006370.1 hypothetical protein 244696 3122201 PBPRA0239 Photobacterium profundum SS9 hypothetical protein YP_128480.1 244076 R 298386 CDS YP_128481.2 161936339 3122660 complement(244912..245919) 1 NC_006370.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 245919 glpX 3122660 glpX Photobacterium profundum SS9 fructose 1,6-bisphosphatase II YP_128481.2 244912 R 298386 CDS YP_128482.1 54307462 3122032 complement(246571..246816) 1 NC_006370.1 hypothetical protein 246816 3122032 PBPRA0241 Photobacterium profundum SS9 hypothetical protein YP_128482.1 246571 R 298386 CDS YP_128483.1 54307463 3123203 complement(246865..247224) 1 NC_006370.1 hypothetical protein 247224 3123203 PBPRA0242 Photobacterium profundum SS9 hypothetical protein YP_128483.1 246865 R 298386 CDS YP_128484.1 54307464 3123033 complement(247372..248826) 1 NC_006370.1 hypothetical protein 248826 3123033 PBPRA0243 Photobacterium profundum SS9 hypothetical protein YP_128484.1 247372 R 298386 CDS YP_128485.1 54307465 3124152 249484..249972 1 NC_006370.1 hypothetical protein 249972 3124152 PBPRA0244 Photobacterium profundum SS9 hypothetical protein YP_128485.1 249484 D 298386 CDS YP_128486.1 54307466 3122807 complement(249960..251156) 1 NC_006370.1 transposase 251156 3122807 PBPRA0245 Photobacterium profundum SS9 transposase YP_128486.1 249960 R 298386 CDS YP_128487.1 54307467 3123401 251502..252071 1 NC_006370.1 toxin secretion, membrane fusionprotein 252071 3123401 PBPRA0246 Photobacterium profundum SS9 toxin secretion, membrane fusionprotein YP_128487.1 251502 D 298386 CDS YP_128488.1 54307468 3123734 252068..254203 1 NC_006370.1 toxin transporter 254203 3123734 PBPRA0247 Photobacterium profundum SS9 toxin transporter YP_128488.1 252068 D 298386 CDS YP_128489.1 54307469 3125073 complement(254312..255838) 1 NC_006370.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 255838 glpK 3125073 glpK Photobacterium profundum SS9 glycerol kinase YP_128489.1 254312 R 298386 CDS YP_128490.1 54307470 3122313 complement(255880..256734) 1 NC_006370.1 glycerol uptake facilitator protein 256734 3122313 PBPRA0249 Photobacterium profundum SS9 glycerol uptake facilitator protein YP_128490.1 255880 R 298386 CDS YP_128491.1 54307471 3122915 257899..258150 1 NC_006370.1 hypothetical protein 258150 3122915 PBPRA0250 Photobacterium profundum SS9 hypothetical protein YP_128491.1 257899 D 298386 CDS YP_128492.1 54307472 3123234 complement(258212..258697) 1 NC_006370.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 258697 3123234 PBPRA0251 Photobacterium profundum SS9 ribonuclease activity regulator protein RraA YP_128492.1 258212 R 298386 CDS YP_128493.1 54307473 3124755 complement(258843..259793) 1 NC_006370.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 259793 3124755 PBPRA0252 Photobacterium profundum SS9 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_128493.1 258843 R 298386 CDS YP_128494.1 54307474 3122293 complement(259912..261243) 1 NC_006370.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 261243 hslU 3122293 hslU Photobacterium profundum SS9 ATP-dependent protease ATP-binding subunit HslU YP_128494.1 259912 R 298386 CDS YP_128495.1 54307475 3124654 complement(261254..261781) 1 NC_006370.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 261781 3124654 PBPRA0254 Photobacterium profundum SS9 ATP-dependent protease peptidase subunit YP_128495.1 261254 R 298386 CDS YP_128496.1 54307476 3123160 complement(261939..262568) 1 NC_006370.1 cell division protein 262568 3123160 PBPRA0255 Photobacterium profundum SS9 cell division protein YP_128496.1 261939 R 298386 CDS YP_128497.1 54307477 3124202 complement(262733..263737) 1 NC_006370.1 negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins; DNA-binding transcriptional regulator CytR 263737 3124202 PBPRA0256 Photobacterium profundum SS9 DNA-binding transcriptional regulator CytR YP_128497.1 262733 R 298386 CDS YP_128498.1 54307478 3123809 complement(263909..266110) 1 NC_006370.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 266110 3123809 PBPRA0257 Photobacterium profundum SS9 primosome assembly protein PriA YP_128498.1 263909 R 298386 CDS YP_128499.1 54307479 3123736 266433..266645 1 NC_006370.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 266645 rpmE 3123736 rpmE Photobacterium profundum SS9 50S ribosomal protein L31 YP_128499.1 266433 D 298386 CDS YP_128500.1 54307480 3122724 266979..268229 1 NC_006370.1 malate oxidoreductase 268229 3122724 PBPRA0259 Photobacterium profundum SS9 malate oxidoreductase YP_128500.1 266979 D 298386 CDS YP_128501.1 54307481 3122834 complement(268339..268656) 1 NC_006370.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 268656 3122834 PBPRA0260 Photobacterium profundum SS9 transcriptional repressor protein MetJ YP_128501.1 268339 R 298386 CDS YP_128502.1 54307482 3125269 268837..270003 1 NC_006370.1 catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase 270003 3125269 PBPRA0261 Photobacterium profundum SS9 cystathionine gamma-synthase YP_128502.1 268837 D 298386 CDS YP_128503.1 54307483 3124550 270015..272420 1 NC_006370.1 multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 272420 metL 3124550 metL Photobacterium profundum SS9 bifunctional aspartate kinase II/homoserine dehydrogenase II YP_128503.1 270015 D 298386 CDS YP_128504.1 54307484 3122051 272709..273608 1 NC_006370.1 MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 273608 metF 3122051 metF Photobacterium profundum SS9 5,10-methylenetetrahydrofolate reductase YP_128504.1 272709 D 298386 CDS YP_128505.1 54307485 3124155 complement(273690..274256) 1 NC_006370.1 transcriptional regulator 274256 3124155 PBPRA0264 Photobacterium profundum SS9 transcriptional regulator YP_128505.1 273690 R 298386 CDS YP_128506.2 161936338 3122446 complement(274693..277323) 1 NC_006370.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 277323 3122446 PBPRA0265 Photobacterium profundum SS9 phosphoenolpyruvate carboxylase YP_128506.2 274693 R 298386 CDS YP_128507.1 54307487 3125107 278072..279085 1 NC_006370.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 279085 argC 3125107 argC Photobacterium profundum SS9 N-acetyl-gamma-glutamyl-phosphate reductase YP_128507.1 278072 D 298386 CDS YP_128508.1 54307488 3124865 279096..279878 1 NC_006370.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 279878 3124865 PBPRA0267 Photobacterium profundum SS9 acetylglutamate kinase YP_128508.1 279096 D 298386 CDS YP_128509.1 54307489 3122122 279978..281192 1 NC_006370.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 281192 3122122 PBPRA0268 Photobacterium profundum SS9 argininosuccinate synthase YP_128509.1 279978 D 298386 CDS YP_128510.1 54307490 3122615 281305..283182 1 NC_006370.1 catalyzes the formation of arginine from (N-L-arginino)succinate and the formation of N-acetylglutamate from glutamate and acetyl-CoA; bifunctional argininosuccinate lyase/N-acetylglutamate synthase 283182 3122615 PBPRA0269 Photobacterium profundum SS9 bifunctional argininosuccinate lyase/N-acetylglutamate synthase YP_128510.1 281305 D 298386 CDS YP_128511.1 54307491 3123578 complement(283267..283524) 1 NC_006370.1 hypothetical protein 283524 3123578 PBPRA0270 Photobacterium profundum SS9 hypothetical protein YP_128511.1 283267 R 298386 CDS YP_128512.2 161936337 3124116 complement(283661..285112) 1 NC_006370.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 285112 3124116 PBPRA0271 Photobacterium profundum SS9 dihydrolipoamide dehydrogenase YP_128512.2 283661 R 298386 CDS YP_128513.1 54307493 3122758 complement(285231..285959) 1 NC_006370.1 peroxiredoxin/glutaredoxin family protein 285959 3122758 PBPRA0272 Photobacterium profundum SS9 peroxiredoxin/glutaredoxin family protein YP_128513.1 285231 R 298386 CDS YP_128514.1 54307494 3124517 286122..287021 1 NC_006370.1 Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA; DNA-binding transcriptional regulator OxyR 287021 3124517 PBPRA0273 Photobacterium profundum SS9 DNA-binding transcriptional regulator OxyR YP_128514.1 286122 D 298386 CDS YP_128515.1 54307495 3124052 complement(287154..289727) 1 NC_006370.1 penicillin-binding protein 1A 289727 3124052 PBPRA0274 Photobacterium profundum SS9 penicillin-binding protein 1A YP_128515.1 287154 R 298386 CDS YP_128516.1 54307496 3122169 289879..290913 1 NC_006370.1 fimbrial assembly protein PilM 290913 3122169 PBPRA0275 Photobacterium profundum SS9 fimbrial assembly protein PilM YP_128516.1 289879 D 298386 CDS YP_128517.1 54307497 3122490 290910..291569 1 NC_006370.1 fimbrial assembly protein PilN 291569 3122490 PBPRA0276 Photobacterium profundum SS9 fimbrial assembly protein PilN YP_128517.1 290910 D 298386 CDS YP_128518.1 54307498 3125291 291562..292161 1 NC_006370.1 fimbrial assembly protein PilO 292161 3125291 PBPRA0277 Photobacterium profundum SS9 fimbrial assembly protein PilO YP_128518.1 291562 D 298386 CDS YP_128519.1 54307499 3122359 292158..292679 1 NC_006370.1 fimbrial assembly protein PilP 292679 3122359 PBPRA0278 Photobacterium profundum SS9 fimbrial assembly protein PilP YP_128519.1 292158 D 298386 CDS YP_128520.1 54307500 3124287 292702..294405 1 NC_006370.1 fimbrial assembly protein 294405 3124287 PBPRA0279 Photobacterium profundum SS9 fimbrial assembly protein YP_128520.1 292702 D 298386 CDS YP_128521.2 161936336 3124704 294569..295087 1 NC_006370.1 type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I 295087 aroK 3124704 aroK Photobacterium profundum SS9 shikimate kinase I YP_128521.2 294569 D 298386 CDS YP_128522.1 54307502 3122030 295111..296190 1 NC_006370.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 296190 aroB 3122030 aroB Photobacterium profundum SS9 3-dehydroquinate synthase YP_128522.1 295111 D 298386 CDS YP_128523.1 54307503 3122903 296205..297713 1 NC_006370.1 DamX-like protein 297713 3122903 PBPRA0282 Photobacterium profundum SS9 DamX-like protein YP_128523.1 296205 D 298386 CDS YP_128524.1 54307504 3125330 297828..298664 1 NC_006370.1 DNA adenine methylase 298664 3125330 PBPRA0283 Photobacterium profundum SS9 DNA adenine methylase YP_128524.1 297828 D 298386 CDS YP_128525.1 54307505 3123833 299052..299714 1 NC_006370.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 299714 3123833 PBPRA0284 Photobacterium profundum SS9 ribulose-phosphate 3-epimerase YP_128525.1 299052 D 298386 CDS YP_128526.1 54307506 3123369 299717..300406 1 NC_006370.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 300406 3123369 PBPRA0285 Photobacterium profundum SS9 phosphoglycolate phosphatase YP_128526.1 299717 D 298386 CDS YP_128527.1 54307507 3124129 300504..301523 1 NC_006370.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 301523 3124129 PBPRA0286 Photobacterium profundum SS9 tryptophanyl-tRNA synthetase YP_128527.1 300504 D 298386 CDS YP_128528.1 54307508 3124615 301785..304130 1 NC_006370.1 extracellular nuclease 304130 3124615 PBPRA0287 Photobacterium profundum SS9 extracellular nuclease YP_128528.1 301785 D 298386 CDS YP_128529.1 54307509 3123124 304238..304816 1 NC_006370.1 aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity; para-aminobenzoate synthase component II 304816 3123124 PBPRA0288 Photobacterium profundum SS9 para-aminobenzoate synthase component II YP_128529.1 304238 D 298386 CDS YP_128530.1 54307510 3124888 305173..306390 1 NC_006370.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 306390 argD 3124888 argD Photobacterium profundum SS9 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein YP_128530.1 305173 D 298386 CDS YP_128531.1 54307511 3124651 306619..307635 1 NC_006370.1 arginine/ornithine succinyltransferase 307635 3124651 PBPRA0290 Photobacterium profundum SS9 arginine/ornithine succinyltransferase YP_128531.1 306619 D 298386 CDS YP_128532.1 54307512 3123901 307727..309184 1 NC_006370.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 309184 astD 3123901 astD Photobacterium profundum SS9 succinylglutamic semialdehyde dehydrogenase YP_128532.1 307727 D 298386 CDS YP_128533.1 54307513 3124635 309272..310063 1 NC_006370.1 hypothetical protein 310063 3124635 PBPRA0292 Photobacterium profundum SS9 hypothetical protein YP_128533.1 309272 D 298386 CDS YP_128534.1 54307514 3122073 complement(310573..311205) 1 NC_006370.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 311205 3122073 PBPRA0293 Photobacterium profundum SS9 cAMP-regulatory protein YP_128534.1 310573 R 298386 CDS YP_128535.1 54307515 3123588 311443..311859 1 NC_006370.1 hypothetical protein 311859 3123588 PBPRA0294 Photobacterium profundum SS9 hypothetical protein YP_128535.1 311443 D 298386 CDS YP_128536.1 54307516 3125029 complement(311949..312818) 1 NC_006370.1 phosphoribulokinase 312818 3125029 PBPRA0295 Photobacterium profundum SS9 phosphoribulokinase YP_128536.1 311949 R 298386 CDS YP_128537.1 54307517 3125285 complement(312941..313165) 1 NC_006370.1 hypothetical protein 313165 3125285 PBPRA0296 Photobacterium profundum SS9 hypothetical protein YP_128537.1 312941 R 298386 CDS YP_128538.1 54307518 3122187 complement(313237..314199) 1 NC_006370.1 hydrolase 314199 3122187 PBPRA0297 Photobacterium profundum SS9 hydrolase YP_128538.1 313237 R 298386 CDS YP_128539.1 54307519 3123632 complement(314235..315635) 1 NC_006370.1 transcriptional regulator 315635 3123632 PBPRA0298 Photobacterium profundum SS9 transcriptional regulator YP_128539.1 314235 R 298386 CDS YP_128540.1 54307520 3125179 315780..316382 1 NC_006370.1 hypothetical protein 316382 3125179 PBPRA0299 Photobacterium profundum SS9 hypothetical protein YP_128540.1 315780 D 298386 CDS YP_128541.1 54307521 3122322 complement(316404..316877) 1 NC_006370.1 hypothetical protein 316877 3122322 PBPRA0300 Photobacterium profundum SS9 hypothetical protein YP_128541.1 316404 R 298386 CDS YP_128542.1 54307522 3122529 complement(316864..318789) 1 NC_006370.1 ABC transporter, ATP-binding protein 318789 3122529 PBPRA0301 Photobacterium profundum SS9 ABC transporter, ATP-binding protein YP_128542.1 316864 R 298386 CDS YP_128543.1 54307523 3122460 318937..319611 1 NC_006370.1 required for KefB activity; glutathione-regulated potassium-efflux system ancillary protein KefG 319611 3122460 PBPRA0302 Photobacterium profundum SS9 glutathione-regulated potassium-efflux system ancillary protein KefG YP_128543.1 318937 D 298386 CDS YP_128544.1 54307524 3122217 319601..321403 1 NC_006370.1 involved in potassium efflux; glutathione-regulated potassium-efflux system protein KefB 321403 3122217 PBPRA0303 Photobacterium profundum SS9 glutathione-regulated potassium-efflux system protein KefB YP_128544.1 319601 D 298386 CDS YP_128545.1 54307525 3124660 321499..321717 1 NC_006370.1 hypothetical protein 321717 3124660 PBPRA0304 Photobacterium profundum SS9 hypothetical protein YP_128545.1 321499 D 298386 CDS YP_128546.1 54307526 3125004 321827..322369 1 NC_006370.1 peptidyl-prolyl cis-trans isomerase 322369 3125004 PBPRA0305 Photobacterium profundum SS9 peptidyl-prolyl cis-trans isomerase YP_128546.1 321827 D 298386 CDS YP_128547.1 54307527 3125433 complement(322494..322730) 1 NC_006370.1 slyX protein (slyX) 322730 3125433 PBPRA0306 Photobacterium profundum SS9 slyX protein (slyX) YP_128547.1 322494 R 298386 CDS YP_128548.1 54307528 3122608 complement(322767..323765) 1 NC_006370.1 hypothetical protein 323765 3122608 PBPRA0307 Photobacterium profundum SS9 hypothetical protein YP_128548.1 322767 R 298386 CDS YP_128549.1 54307529 3124717 323925..324743 1 NC_006370.1 FKBP-type peptidyl-prolyl cis-trans isomerase 1 324743 3124717 PBPRA0308 Photobacterium profundum SS9 FKBP-type peptidyl-prolyl cis-trans isomerase 1 YP_128549.1 323925 D 298386 CDS YP_128550.1 54307530 3125211 324919..325656 1 NC_006370.1 hypothetical protein 325656 3125211 PBPRA0309 Photobacterium profundum SS9 hypothetical protein YP_128550.1 324919 D 298386 CDS YP_128551.1 54307531 3125339 325653..326045 1 NC_006370.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD 326045 3125339 PBPRA0310 Photobacterium profundum SS9 sulfur transfer complex subunit TusD YP_128551.1 325653 D 298386 CDS YP_128552.1 54307532 3125159 326082..326438 1 NC_006370.1 hypothetical protein 326438 3125159 PBPRA0311 Photobacterium profundum SS9 hypothetical protein YP_128552.1 326082 D 298386 CDS YP_128553.1 54307533 3125051 326446..326739 1 NC_006370.1 hypothetical protein 326739 3125051 PBPRA0312 Photobacterium profundum SS9 hypothetical protein YP_128553.1 326446 D 298386 CDS YP_128554.1 54307534 3123069 326919..327293 1 NC_006370.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 327293 rpsL 3123069 rpsL Photobacterium profundum SS9 30S ribosomal protein S12 YP_128554.1 326919 D 298386 CDS YP_128555.1 54307535 3125044 327386..327856 1 NC_006370.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 327856 3125044 PBPRA0314 Photobacterium profundum SS9 30S ribosomal protein S7 YP_128555.1 327386 D 298386 CDS YP_128556.1 54307536 3125243 327935..330031 1 NC_006370.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 330031 3125243 PBPRA0315 Photobacterium profundum SS9 elongation factor G YP_128556.1 327935 D 298386 CDS YP_128557.1 54307537 3125348 330133..331317 1 NC_006370.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 331317 tuf 3125348 tuf Photobacterium profundum SS9 elongation factor Tu YP_128557.1 330133 D 298386 CDS YP_128558.1 54307538 3122128 331561..331749 1 NC_006370.1 bacterioferritin-associated ferredoxin 331749 3122128 PBPRA0317 Photobacterium profundum SS9 bacterioferritin-associated ferredoxin YP_128558.1 331561 D 298386 CDS YP_128559.1 54307539 3125258 331836..332312 1 NC_006370.1 bacterioferritin 332312 3125258 PBPRA0318 Photobacterium profundum SS9 bacterioferritin YP_128559.1 331836 D 298386 CDS YP_128560.1 54307540 3124675 332677..332988 1 NC_006370.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 332988 rpsJ 3124675 rpsJ Photobacterium profundum SS9 30S ribosomal protein S10 YP_128560.1 332677 D 298386 CDS YP_128561.1 54307541 3122428 333001..333630 1 NC_006370.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 333630 rplC 3122428 rplC Photobacterium profundum SS9 50S ribosomal protein L3 YP_128561.1 333001 D 298386 CDS YP_128562.1 54307542 3122184 333646..334248 1 NC_006370.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 334248 rplD 3122184 rplD Photobacterium profundum SS9 50S ribosomal protein L4 YP_128562.1 333646 D 298386 CDS YP_128563.1 54307543 3122042 334245..334547 1 NC_006370.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 334547 rplW 3122042 rplW Photobacterium profundum SS9 50S ribosomal protein L23 YP_128563.1 334245 D 298386 CDS YP_128564.1 54307544 3124216 334566..335393 1 NC_006370.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 335393 rplB 3124216 rplB Photobacterium profundum SS9 50S ribosomal protein L2 YP_128564.1 334566 D 298386 CDS YP_128565.1 54307545 3122663 335411..335689 1 NC_006370.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 335689 rpsS 3122663 rpsS Photobacterium profundum SS9 30S ribosomal protein S19 YP_128565.1 335411 D 298386 CDS YP_128566.1 54307546 3122626 335700..336032 1 NC_006370.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 336032 rplV 3122626 rplV Photobacterium profundum SS9 50S ribosomal protein L22 YP_128566.1 335700 D 298386 CDS YP_128567.1 54307547 3123240 336048..336737 1 NC_006370.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 336737 rpsC 3123240 rpsC Photobacterium profundum SS9 30S ribosomal protein S3 YP_128567.1 336048 D 298386 CDS YP_128568.1 54307548 3122452 336749..337159 1 NC_006370.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 337159 rplP 3122452 rplP Photobacterium profundum SS9 50S ribosomal protein L16 YP_128568.1 336749 D 298386 CDS YP_128569.1 54307549 3122633 337156..337350 1 NC_006370.1 ribosomal protein L29 337350 3122633 PBPRA0328 Photobacterium profundum SS9 ribosomal protein L29 YP_128569.1 337156 D 298386 CDS YP_128570.1 54307550 3123046 337350..337604 1 NC_006370.1 30S ribosomal protein S17 337604 3123046 PBPRA0329 Photobacterium profundum SS9 30S ribosomal protein S17 YP_128570.1 337350 D 298386 CDS YP_128571.1 54307551 3123857 337769..338140 1 NC_006370.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 338140 rplN 3123857 rplN Photobacterium profundum SS9 50S ribosomal protein L14 YP_128571.1 337769 D 298386 CDS YP_128572.1 54307552 3123428 338152..338466 1 NC_006370.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 338466 rplX 3123428 rplX Photobacterium profundum SS9 50S ribosomal protein L24 YP_128572.1 338152 D 298386 CDS YP_128573.1 54307553 3125332 338484..339023 1 NC_006370.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 339023 rplE 3125332 rplE Photobacterium profundum SS9 50S ribosomal protein L5 YP_128573.1 338484 D 298386 CDS YP_128574.1 54307554 3123519 339039..339344 1 NC_006370.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 339344 rpsN 3123519 rpsN Photobacterium profundum SS9 30S ribosomal protein S14 YP_128574.1 339039 D 298386 CDS YP_128575.1 54307555 3123196 339379..339771 1 NC_006370.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 339771 rpsH 3123196 rpsH Photobacterium profundum SS9 30S ribosomal protein S8 YP_128575.1 339379 D 298386 CDS YP_128576.1 54307556 3124855 339784..340317 1 NC_006370.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 340317 rplF 3124855 rplF Photobacterium profundum SS9 50S ribosomal protein L6 YP_128576.1 339784 D 298386 CDS YP_128577.1 54307557 3124278 340327..340680 1 NC_006370.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 340680 rplR 3124278 rplR Photobacterium profundum SS9 50S ribosomal protein L18 YP_128577.1 340327 D 298386 CDS YP_128578.1 54307558 3123625 340694..341191 1 NC_006370.1 30S ribosomal protein S5 341191 3123625 PBPRA0337 Photobacterium profundum SS9 30S ribosomal protein S5 YP_128578.1 340694 D 298386 CDS YP_128579.1 54307559 3123504 341188..341376 1 NC_006370.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 341376 rpmD 3123504 rpmD Photobacterium profundum SS9 50S ribosomal protein L30 YP_128579.1 341188 D 298386 CDS YP_128580.1 54307560 3123636 341382..341816 1 NC_006370.1 late assembly protein; 50S ribosomal protein L15 341816 rplO 3123636 rplO Photobacterium profundum SS9 50S ribosomal protein L15 YP_128580.1 341382 D 298386 CDS YP_128581.1 54307561 3125536 341839..343155 1 NC_006370.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 343155 secY 3125536 secY Photobacterium profundum SS9 preprotein translocase subunit SecY YP_128581.1 341839 D 298386 CDS YP_128582.1 54307562 3122817 343192..343305 1 NC_006370.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 343305 rpmJ 3122817 rpmJ Photobacterium profundum SS9 50S ribosomal protein L36 YP_128582.1 343192 D 298386 CDS YP_128583.1 54307563 3123813 343450..343806 1 NC_006370.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 343806 rpsM 3123813 rpsM Photobacterium profundum SS9 30S ribosomal protein S13 YP_128583.1 343450 D 298386 CDS YP_128584.1 54307564 3125115 343826..344215 1 NC_006370.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 344215 3125115 PBPRA0343 Photobacterium profundum SS9 30S ribosomal protein S11 YP_128584.1 343826 D 298386 CDS YP_128585.2 161936335 3122299 344243..344863 1 NC_006370.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 344863 rpsD 3122299 rpsD Photobacterium profundum SS9 30S ribosomal protein S4 YP_128585.2 344243 D 298386 CDS YP_128586.1 54307566 3123359 344887..345876 1 NC_006370.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 345876 3123359 PBPRA0345 Photobacterium profundum SS9 DNA-directed RNA polymerase subunit alpha YP_128586.1 344887 D 298386 CDS YP_128587.1 54307567 3122925 345910..346293 1 NC_006370.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 346293 rplQ 3122925 rplQ Photobacterium profundum SS9 50S ribosomal protein L17 YP_128587.1 345910 D 298386 CDS YP_128588.1 54307568 3125196 346381..347361 1 NC_006370.1 glycosyltransferase 347361 3125196 PBPRA0347 Photobacterium profundum SS9 glycosyltransferase YP_128588.1 346381 D 298386 CDS YP_128589.1 54307569 3123879 complement(347409..347993) 1 NC_006370.1 hypothetical protein 347993 3123879 PBPRA0348 Photobacterium profundum SS9 hypothetical protein YP_128589.1 347409 R 298386 CDS YP_128590.1 54307570 3123652 complement(348101..351055) 1 NC_006370.1 periplasmic protein involved in polysaccharide export 351055 3123652 PBPRA0349 Photobacterium profundum SS9 periplasmic protein involved in polysaccharide export YP_128590.1 348101 R 298386 CDS YP_128591.1 54307571 3125157 complement(351052..351813) 1 NC_006370.1 hypothetical protein 351813 3125157 PBPRA0350 Photobacterium profundum SS9 hypothetical protein YP_128591.1 351052 R 298386 CDS YP_128592.1 54307572 3124139 complement(351831..352142) 1 NC_006370.1 anti-anti-sigma regulatory factor 352142 3124139 PBPRA0351 Photobacterium profundum SS9 anti-anti-sigma regulatory factor YP_128592.1 351831 R 298386 CDS YP_128593.1 54307573 3123749 complement(352200..353993) 1 NC_006370.1 intercellular adhesion protein A 353993 3123749 PBPRA0352 Photobacterium profundum SS9 intercellular adhesion protein A YP_128593.1 352200 R 298386 CDS YP_128594.1 54307574 3121955 complement(354018..355091) 1 NC_006370.1 glycosyltransferase 355091 3121955 PBPRA0353 Photobacterium profundum SS9 glycosyltransferase YP_128594.1 354018 R 298386 CDS YP_128595.1 54307575 3123826 complement(355102..356529) 1 NC_006370.1 polysaccharide export protein 356529 3123826 PBPRA0354 Photobacterium profundum SS9 polysaccharide export protein YP_128595.1 355102 R 298386 CDS YP_128596.1 54307576 3123392 complement(356531..356869) 1 NC_006370.1 hypothetical protein 356869 3123392 PBPRA0355 Photobacterium profundum SS9 hypothetical protein YP_128596.1 356531 R 298386 CDS YP_128597.1 54307577 3123192 complement(356933..358069) 1 NC_006370.1 glycosyltransferase 358069 3123192 PBPRA0356 Photobacterium profundum SS9 glycosyltransferase YP_128597.1 356933 R 298386 CDS YP_128598.1 54307578 3124593 complement(358153..359487) 1 NC_006370.1 ExoQ family protein 359487 3124593 PBPRA0357 Photobacterium profundum SS9 ExoQ family protein YP_128598.1 358153 R 298386 CDS YP_128599.1 54307579 3124496 complement(359787..360533) 1 NC_006370.1 transposase 360533 3124496 PBPRA0358 Photobacterium profundum SS9 transposase YP_128599.1 359787 R 298386 CDS YP_128600.1 54307580 3122604 complement(367296..367859) 1 NC_006370.1 transposase and inactivated derivative 367859 3122604 PBPRA0366 Photobacterium profundum SS9 transposase and inactivated derivative YP_128600.1 367296 R 298386 CDS YP_128601.1 54307581 3122086 complement(367861..368331) 1 NC_006370.1 transposase and inactivated derivative 368331 3122086 PBPRA0367 Photobacterium profundum SS9 transposase and inactivated derivative YP_128601.1 367861 R 298386 CDS YP_128602.1 54307582 3124908 complement(368410..368973) 1 NC_006370.1 transposase and inactivated derivative 368973 3124908 PBPRA0368 Photobacterium profundum SS9 transposase and inactivated derivative YP_128602.1 368410 R 298386 CDS YP_128603.1 54307583 3122271 370017..370961 1 NC_006370.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 370961 3122271 PBPRA0369 Photobacterium profundum SS9 homoserine O-succinyltransferase YP_128603.1 370017 D 298386 CDS YP_128604.1 54307584 3122059 complement(371009..371875) 1 NC_006370.1 hypothetical protein 371875 3122059 PBPRA0370 Photobacterium profundum SS9 hypothetical protein YP_128604.1 371009 R 298386 CDS YP_128605.1 54307585 3124778 complement(372136..372621) 1 NC_006370.1 hypothetical protein 372621 3124778 PBPRA0371 Photobacterium profundum SS9 hypothetical protein YP_128605.1 372136 R 298386 CDS YP_128606.1 54307586 3125293 complement(372633..373892) 1 NC_006370.1 peptide ABC transporter permease 373892 3125293 PBPRA0372 Photobacterium profundum SS9 peptide ABC transporter permease YP_128606.1 372633 R 298386 CDS YP_128607.1 54307587 3124800 complement(373889..374584) 1 NC_006370.1 ABC transporter 374584 3124800 PBPRA0373 Photobacterium profundum SS9 ABC transporter YP_128607.1 373889 R 298386 CDS YP_128608.1 54307588 3122222 complement(374625..375326) 1 NC_006370.1 hypothetical protein 375326 3122222 PBPRA0374 Photobacterium profundum SS9 hypothetical protein YP_128608.1 374625 R 298386 CDS YP_128609.1 54307589 3122578 complement(375366..375677) 1 NC_006370.1 hypothetical protein 375677 3122578 PBPRA0375 Photobacterium profundum SS9 hypothetical protein YP_128609.1 375366 R 298386 CDS YP_128610.1 54307590 3125178 complement(375752..376306) 1 NC_006370.1 transcriptional regulator 376306 3125178 PBPRA0376 Photobacterium profundum SS9 transcriptional regulator YP_128610.1 375752 R 298386 CDS YP_128611.1 54307591 3122825 376611..376823 1 NC_006370.1 hypothetical protein 376823 3122825 PBPRA0377 Photobacterium profundum SS9 hypothetical protein YP_128611.1 376611 D 298386 CDS YP_128612.1 54307592 3124249 complement(376866..377501) 1 NC_006370.1 peptide methionine sulfoxide reductase 377501 3124249 PBPRA0378 Photobacterium profundum SS9 peptide methionine sulfoxide reductase YP_128612.1 376866 R 298386 CDS YP_128613.1 54307593 3125010 377670..379406 1 NC_006370.1 hypothetical protein 379406 3125010 PBPRA0379 Photobacterium profundum SS9 hypothetical protein YP_128613.1 377670 D 298386 CDS YP_128614.1 54307594 3125492 379403..383158 1 NC_006370.1 hypothetical protein 383158 3125492 PBPRA0380 Photobacterium profundum SS9 hypothetical protein YP_128614.1 379403 D 298386 CDS YP_128615.1 54307595 3122707 383254..383562 1 NC_006370.1 hypothetical protein 383562 3122707 PBPRA0381 Photobacterium profundum SS9 hypothetical protein YP_128615.1 383254 D 298386 CDS YP_128616.1 54307596 3123102 complement(383636..384025) 1 NC_006370.1 phage shock protein E 384025 3123102 PBPRA0382 Photobacterium profundum SS9 phage shock protein E YP_128616.1 383636 R 298386 CDS YP_128617.1 54307597 3125303 complement(384106..384636) 1 NC_006370.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 384636 3125303 PBPRA0383 Photobacterium profundum SS9 inorganic pyrophosphatase YP_128617.1 384106 R 298386 CDS YP_128618.1 54307598 3122844 complement(384856..385890) 1 NC_006370.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 385890 3122844 PBPRA0384 Photobacterium profundum SS9 fructose-1,6-bisphosphatase YP_128618.1 384856 R 298386 CDS YP_128619.1 54307599 3122647 386067..387425 1 NC_006370.1 UDP-N-acetylmuramate-alanine ligase 387425 3122647 PBPRA0385 Photobacterium profundum SS9 UDP-N-acetylmuramate-alanine ligase YP_128619.1 386067 D 298386 CDS YP_128620.1 54307600 3125155 387447..388067 1 NC_006370.1 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; aromatic acid decarboxylase 388067 3125155 PBPRA0386 Photobacterium profundum SS9 aromatic acid decarboxylase YP_128620.1 387447 D 298386 CDS YP_128621.1 54307601 3123373 complement(388125..388571) 1 NC_006370.1 universal stress protein UspA 388571 3123373 PBPRA0387 Photobacterium profundum SS9 universal stress protein UspA YP_128621.1 388125 R 298386 CDS YP_128622.1 54307602 3125056 complement(388647..391223) 1 NC_006370.1 TRAP-type uncharacterized transport system, fused permease component 391223 3125056 PBPRA0388 Photobacterium profundum SS9 TRAP-type uncharacterized transport system, fused permease component YP_128622.1 388647 R 298386 CDS YP_128623.1 54307603 3124977 complement(391330..392301) 1 NC_006370.1 immunogenic protein 392301 3124977 PBPRA0389 Photobacterium profundum SS9 immunogenic protein YP_128623.1 391330 R 298386 CDS YP_128624.1 54307604 3125442 complement(392596..393066) 1 NC_006370.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor ArgR 393066 3125442 PBPRA0390 Photobacterium profundum SS9 arginine repressor ArgR YP_128624.1 392596 R 298386 CDS YP_128625.1 54307605 3125294 393419..394357 1 NC_006370.1 oxidizes malate to oxaloacetate; malate dehydrogenase 394357 3125294 PBPRA0391 Photobacterium profundum SS9 malate dehydrogenase YP_128625.1 393419 D 298386 CDS YP_128626.1 54307606 3125098 394724..395947 1 NC_006370.1 transposase 395947 3125098 PBPRA0392 Photobacterium profundum SS9 transposase YP_128626.1 394724 D 298386 CDS YP_128627.1 54307607 3125210 complement(396110..397081) 1 NC_006370.1 octaprenyl-diphosphate synthase 397081 3125210 PBPRA0393 Photobacterium profundum SS9 octaprenyl-diphosphate synthase YP_128627.1 396110 R 298386 CDS YP_128628.1 54307608 3122325 397360..397671 1 NC_006370.1 50S ribosomal protein L21 397671 rplU 3122325 rplU Photobacterium profundum SS9 50S ribosomal protein L21 YP_128628.1 397360 D 298386 CDS YP_128629.1 54307609 3125181 397691..397948 1 NC_006370.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 397948 rpmA 3125181 rpmA Photobacterium profundum SS9 50S ribosomal protein L27 YP_128629.1 397691 D 298386 CDS YP_128630.1 54307610 3122524 398013..398939 1 NC_006370.1 hypothetical protein 398939 3122524 PBPRA0396 Photobacterium profundum SS9 hypothetical protein YP_128630.1 398013 D 298386 CDS YP_128631.1 54307611 3122213 399044..400216 1 NC_006370.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 400216 obgE 3122213 obgE Photobacterium profundum SS9 GTPase ObgE YP_128631.1 399044 D 298386 CDS YP_128632.1 54307612 3122320 400402..401193 1 NC_006370.1 hypothetical protein 401193 3122320 PBPRA0398 Photobacterium profundum SS9 hypothetical protein YP_128632.1 400402 D 298386 CDS YP_128633.1 54307613 3122971 401552..402214 1 NC_006370.1 dihydrofolate reductase 402214 3122971 PBPRA0399 Photobacterium profundum SS9 dihydrofolate reductase YP_128633.1 401552 D 298386 CDS YP_128634.1 54307614 3125460 complement(402290..403111) 1 NC_006370.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 403111 apaH 3125460 apaH Photobacterium profundum SS9 diadenosine tetraphosphatase YP_128634.1 402290 R 298386 CDS YP_128635.1 54307615 3125148 complement(403120..403503) 1 NC_006370.1 protein associated with Co2+ and Mg2+ efflux; ApaG 403503 apaG 3125148 apaG Photobacterium profundum SS9 ApaG YP_128635.1 403120 R 298386 CDS YP_128636.1 54307616 3122567 complement(403654..404514) 1 NC_006370.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 404514 ksgA 3122567 ksgA Photobacterium profundum SS9 dimethyladenosine transferase YP_128636.1 403654 R 298386 CDS YP_128637.1 54307617 3122353 complement(404466..405461) 1 NC_006370.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 405461 pdxA 3122353 pdxA Photobacterium profundum SS9 4-hydroxythreonine-4-phosphate dehydrogenase YP_128637.1 404466 R 298386 CDS YP_128638.1 54307618 3122528 complement(405445..406749) 1 NC_006370.1 survival protein SurA 406749 3122528 PBPRA0404 Photobacterium profundum SS9 survival protein SurA YP_128638.1 405445 R 298386 CDS YP_128639.1 54307619 3122083 complement(406796..409162) 1 NC_006370.1 determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein 409162 3122083 PBPRA0405 Photobacterium profundum SS9 organic solvent tolerance protein YP_128639.1 406796 R 298386 CDS YP_128640.2 161936334 3124960 409336..410175 1 NC_006370.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 410175 djlA 3124960 djlA Photobacterium profundum SS9 Dna-J like membrane chaperone protein YP_128640.2 409336 D 298386 CDS YP_128641.1 54307621 3122230 complement(410296..411300) 1 NC_006370.1 Catalyzes the reduction of sulfopyruvate to (R)-sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate, alpha-ketoglutarate, and to a much lower extent, KHTCA, but not pyruvate. Involved in the biosynthes; D-lactate dehydrogenase 411300 3122230 PBPRA0407 Photobacterium profundum SS9 D-lactate dehydrogenase YP_128641.1 410296 R 298386 CDS YP_128642.1 54307622 3122233 complement(411383..412102) 1 NC_006370.1 ribosomal large subunit pseudouridine synthase A 412102 3122233 PBPRA0408 Photobacterium profundum SS9 ribosomal large subunit pseudouridine synthase A YP_128642.1 411383 R 298386 CDS YP_128643.1 54307623 3123225 complement(412195..415113) 1 NC_006370.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 415113 3123225 PBPRA0409 Photobacterium profundum SS9 ATP-dependent helicase HepA YP_128643.1 412195 R 298386 CDS YP_128644.1 54307624 3121947 415433..416809 1 NC_006370.1 hypothetical protein 416809 3121947 PBPRA0410 Photobacterium profundum SS9 hypothetical protein YP_128644.1 415433 D 298386 CDS YP_128645.1 54307625 3123536 complement(416829..417566) 1 NC_006370.1 thiamine ABC transporter 417566 3123536 PBPRA0411 Photobacterium profundum SS9 thiamine ABC transporter YP_128645.1 416829 R 298386 CDS YP_128646.1 54307626 3123478 complement(417567..419210) 1 NC_006370.1 permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein 419210 thiP 3123478 thiP Photobacterium profundum SS9 thiamine transporter membrane protein YP_128646.1 417567 R 298386 CDS YP_128647.2 161936333 3122739 complement(419248..420234) 1 NC_006370.1 part of the thiamine and TPP transport system tbpA-thiPQ; thiamine transporter substrate binding subunit 420234 tbpA 3122739 tbpA Photobacterium profundum SS9 thiamine transporter substrate binding subunit YP_128647.2 419248 R 298386 CDS YP_128648.1 54307628 3123795 complement(420679..421602) 1 NC_006370.1 hypothetical protein 421602 3123795 PBPRA0414 Photobacterium profundum SS9 hypothetical protein YP_128648.1 420679 R 298386 CDS YP_128649.1 54307629 3124040 421851..422243 1 NC_006370.1 hypothetical protein 422243 3124040 PBPRA0415 Photobacterium profundum SS9 hypothetical protein YP_128649.1 421851 D 298386 CDS YP_128650.1 54307630 3122097 complement(422616..423218) 1 NC_006370.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 423218 leuD 3122097 leuD Photobacterium profundum SS9 isopropylmalate isomerase small subunit YP_128650.1 422616 R 298386 CDS YP_128651.1 54307631 3124180 complement(423236..424735) 1 NC_006370.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 424735 3124180 PBPRA0417 Photobacterium profundum SS9 isopropylmalate isomerase large subunit YP_128651.1 423236 R 298386 CDS YP_128652.1 54307632 3122278 complement(424763..425851) 1 NC_006370.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 425851 3122278 PBPRA0418 Photobacterium profundum SS9 3-isopropylmalate dehydrogenase YP_128652.1 424763 R 298386 CDS YP_128653.1 54307633 3122657 complement(426021..427565) 1 NC_006370.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 427565 3122657 PBPRA0419 Photobacterium profundum SS9 2-isopropylmalate synthase YP_128653.1 426021 R 298386 CDS YP_128654.1 54307634 3124100 428209..428853 1 NC_006370.1 transcriptional regulator 428853 3124100 PBPRA0420 Photobacterium profundum SS9 transcriptional regulator YP_128654.1 428209 D 298386 CDS YP_128655.1 54307635 3123819 428850..430193 1 NC_006370.1 hypothetical protein 430193 3123819 PBPRA0421 Photobacterium profundum SS9 hypothetical protein YP_128655.1 428850 D 298386 CDS YP_128656.1 54307636 3124145 430190..433300 1 NC_006370.1 cation/multidrug efflux pump 433300 3124145 PBPRA0422 Photobacterium profundum SS9 cation/multidrug efflux pump YP_128656.1 430190 D 298386 CDS YP_128657.1 54307637 3124992 433869..434825 1 NC_006370.1 activator for leuABCD operon; member of LysR family of transcriptional activators; leucine transcriptional activator 434825 leuO 3124992 leuO Photobacterium profundum SS9 leucine transcriptional activator YP_128657.1 433869 D 298386 CDS YP_128658.1 54307638 3124241 435179..436993 1 NC_006370.1 long-chain-fatty-acid-CoAligase 436993 3124241 PBPRA0424 Photobacterium profundum SS9 long-chain-fatty-acid-CoAligase YP_128658.1 435179 D 298386 CDS YP_128659.1 54307639 3122321 437816..439534 1 NC_006370.1 with IlvH catalyzes the formation of 2-acetolactate from pyruvate; acetolactate synthase 3 catalytic subunit 439534 3122321 PBPRA0425 Photobacterium profundum SS9 acetolactate synthase 3 catalytic subunit YP_128659.1 437816 D 298386 CDS YP_128660.1 54307640 3122192 439534..440031 1 NC_006370.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; acetolactate synthase III small subunit 440031 3122192 PBPRA0426 Photobacterium profundum SS9 acetolactate synthase III small subunit YP_128660.1 439534 D 298386 CDS YP_128661.1 54307641 3122447 complement(440538..441191) 1 NC_006370.1 LuxZ 441191 3122447 PBPRA0427 Photobacterium profundum SS9 LuxZ YP_128661.1 440538 R 298386 CDS YP_128662.1 54307642 3125171 complement(441531..442943) 1 NC_006370.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 442943 3125171 PBPRA0428 Photobacterium profundum SS9 pyruvate kinase YP_128662.1 441531 R 298386 CDS YP_128663.1 54307643 3124743 complement(443877..445715) 1 NC_006370.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 445715 3124743 PBPRA0430 Photobacterium profundum SS9 RNA polymerase sigma factor RpoD YP_128663.1 443877 R 298386 CDS YP_128664.1 54307644 3125121 complement(445808..447634) 1 NC_006370.1 synthesizes RNA primers at the replication forks; DNA primase 447634 dnaG 3125121 dnaG Photobacterium profundum SS9 DNA primase YP_128664.1 445808 R 298386 CDS YP_128665.1 54307645 3123017 complement(447690..448133) 1 NC_006370.1 hypothetical protein 448133 3123017 PBPRA0432 Photobacterium profundum SS9 hypothetical protein YP_128665.1 447690 R 298386 CDS YP_128666.1 54307646 3124503 complement(448160..448375) 1 NC_006370.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 448375 rpsU 3124503 rpsU Photobacterium profundum SS9 30S ribosomal protein S21 YP_128666.1 448160 R 298386 CDS YP_128667.1 54307647 3123603 448627..449646 1 NC_006370.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 449646 3123603 PBPRA0434 Photobacterium profundum SS9 DNA-binding/iron metalloprotein/AP endonuclease YP_128667.1 448627 D 298386 CDS YP_128668.1 54307648 3122101 complement(449727..450338) 1 NC_006370.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY 450338 3122101 PBPRA0435 Photobacterium profundum SS9 glycerol-3-phosphate acyltransferase PlsY YP_128668.1 449727 R 298386 CDS YP_128669.1 54307649 3124355 450567..450926 1 NC_006370.1 dihydroneopterin aldolase 450926 3124355 PBPRA0436 Photobacterium profundum SS9 dihydroneopterin aldolase YP_128669.1 450567 D 298386 CDS YP_128670.1 54307650 3124422 450923..451411 1 NC_006370.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 451411 3124422 PBPRA0437 Photobacterium profundum SS9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_128670.1 450923 D 298386 CDS YP_128671.1 54307651 3124436 451429..452232 1 NC_006370.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 452232 uppP 3124436 uppP Photobacterium profundum SS9 undecaprenyl pyrophosphate phosphatase YP_128671.1 451429 D 298386 CDS YP_128672.1 54307652 3124277 complement(452363..453598) 1 NC_006370.1 catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 453598 cca 3124277 cca Photobacterium profundum SS9 multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase YP_128672.1 452363 R 298386 CDS YP_128673.1 54307653 3124340 454184..455854 1 NC_006370.1 general secretion pathway protein A 455854 3124340 PBPRA0440 Photobacterium profundum SS9 general secretion pathway protein A YP_128673.1 454184 D 298386 CDS YP_128674.1 54307654 3124880 455854..456810 1 NC_006370.1 hypothetical protein 456810 3124880 PBPRA0441 Photobacterium profundum SS9 hypothetical protein YP_128674.1 455854 D 298386 CDS YP_128675.1 54307655 3123958 complement(456896..457513) 1 NC_006370.1 hypothetical protein 457513 3123958 PBPRA0442 Photobacterium profundum SS9 hypothetical protein YP_128675.1 456896 R 298386 CDS YP_128676.1 54307656 3124214 complement(457627..458895) 1 NC_006370.1 phosphate/sulphate permease 458895 3124214 PBPRA0443 Photobacterium profundum SS9 phosphate/sulphate permease YP_128676.1 457627 R 298386 CDS YP_128677.1 54307657 3124090 complement(458928..459608) 1 NC_006370.1 phosphate transport regulator 459608 3124090 PBPRA0444 Photobacterium profundum SS9 phosphate transport regulator YP_128677.1 458928 R 298386 CDS YP_128678.1 54307658 3124105 459770..461311 1 NC_006370.1 hypothetical protein 461311 3124105 PBPRA0445 Photobacterium profundum SS9 hypothetical protein YP_128678.1 459770 D 298386 CDS YP_128679.1 54307659 3123885 complement(461342..462157) 1 NC_006370.1 potassium channel protein 462157 3123885 PBPRA0446 Photobacterium profundum SS9 potassium channel protein YP_128679.1 461342 R 298386 CDS YP_128680.1 54307660 3123723 462339..463940 1 NC_006370.1 methyl-accepting chemotaxis protein 463940 3123723 PBPRA0447 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_128680.1 462339 D 298386 CDS YP_128681.1 54307661 3123694 464159..467032 1 NC_006370.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 467032 3123694 PBPRA0448 Photobacterium profundum SS9 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_128681.1 464159 D 298386 CDS YP_128682.1 54307662 3122384 467192..468622 1 NC_006370.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 468622 3122384 PBPRA0449 Photobacterium profundum SS9 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_128682.1 467192 D 298386 CDS YP_128683.1 54307663 3122390 complement(468803..470089) 1 NC_006370.1 trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 470089 tolC 3122390 tolC Photobacterium profundum SS9 outer membrane channel protein YP_128683.1 468803 R 298386 CDS YP_128684.1 54307664 3122402 470351..470983 1 NC_006370.1 MutT/nudix family protein 470983 3122402 PBPRA0451 Photobacterium profundum SS9 MutT/nudix family protein YP_128684.1 470351 D 298386 CDS YP_128685.1 54307665 3122058 471079..471507 1 NC_006370.1 hypothetical protein 471507 3122058 PBPRA0452 Photobacterium profundum SS9 hypothetical protein YP_128685.1 471079 D 298386 CDS YP_128686.1 54307666 3124777 471539..472363 1 NC_006370.1 cyclic 3',5'-adenosine monophosphate phosphodiesterase 472363 3124777 PBPRA0453 Photobacterium profundum SS9 cyclic 3',5'-adenosine monophosphate phosphodiesterase YP_128686.1 471539 D 298386 CDS YP_128687.2 161936332 3124768 472364..472942 1 NC_006370.1 Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase 472942 3124768 PBPRA0454 Photobacterium profundum SS9 esterase YP_128687.2 472364 D 298386 CDS YP_128688.1 54307668 3125343 473063..474946 1 NC_006370.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 474946 3125343 PBPRA0455 Photobacterium profundum SS9 DNA topoisomerase IV subunit B YP_128688.1 473063 D 298386 CDS YP_128689.1 54307669 3124829 475084..477354 1 NC_006370.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 477354 3124829 PBPRA0456 Photobacterium profundum SS9 DNA topoisomerase IV subunit A YP_128689.1 475084 D 298386 CDS YP_128690.2 161936331 3124776 complement(477500..478819) 1 NC_006370.1 catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase 478819 3124776 PBPRA0457 Photobacterium profundum SS9 xylose isomerase YP_128690.2 477500 R 298386 CDS YP_128691.1 54307671 3124744 479197..480540 1 NC_006370.1 uncharacterized member of the GPH family of galactose-pentose-hexuronide transporters; symporter YagG 480540 3124744 PBPRA0458 Photobacterium profundum SS9 symporter YagG YP_128691.1 479197 D 298386 CDS YP_128692.1 54307672 3122181 480635..481660 1 NC_006370.1 hypothetical protein 481660 3122181 PBPRA0459 Photobacterium profundum SS9 hypothetical protein YP_128692.1 480635 D 298386 CDS YP_128693.1 54307673 3124775 481776..482879 1 NC_006370.1 hypothetical protein 482879 3124775 PBPRA0460 Photobacterium profundum SS9 hypothetical protein YP_128693.1 481776 D 298386 CDS YP_128694.1 54307674 3124786 483054..485414 1 NC_006370.1 xylosidase 485414 3124786 PBPRA0461 Photobacterium profundum SS9 xylosidase YP_128694.1 483054 D 298386 CDS YP_128695.1 54307675 3124811 485799..486794 1 NC_006370.1 periplasmic substrate-binding component of the ATP-dependent xylose transport system; high affinity; D-xylose transporter subunit XylF 486794 xylF 3124811 xylF Photobacterium profundum SS9 D-xylose transporter subunit XylF YP_128695.1 485799 D 298386 CDS YP_128696.1 54307676 3121961 486875..488398 1 NC_006370.1 with XylFH is part of the high affinity xylose ABC transporter; xylose transporter ATP-binding subunit 488398 3121961 PBPRA0463 Photobacterium profundum SS9 xylose transporter ATP-binding subunit YP_128696.1 486875 D 298386 CDS YP_128697.1 54307677 3122962 488398..489573 1 NC_006370.1 inner membrane permease of D-xyloseABC transporter 489573 3122962 PBPRA0464 Photobacterium profundum SS9 inner membrane permease of D-xyloseABC transporter YP_128697.1 488398 D 298386 CDS YP_128698.1 54307678 3124766 complement(489699..490043) 1 NC_006370.1 hypothetical protein 490043 3124766 PBPRA0465 Photobacterium profundum SS9 hypothetical protein YP_128698.1 489699 R 298386 CDS YP_128699.1 54307679 3125190 complement(490139..490855) 1 NC_006370.1 xylose operon regulatory protein 490855 3125190 PBPRA0466 Photobacterium profundum SS9 xylose operon regulatory protein YP_128699.1 490139 R 298386 CDS YP_128700.1 54307680 3122031 491096..492547 1 NC_006370.1 xylulose kinase 492547 3122031 PBPRA0467 Photobacterium profundum SS9 xylulose kinase YP_128700.1 491096 D 298386 CDS YP_128701.1 54307681 3122005 492691..493416 1 NC_006370.1 1-acyl-sn-glycerol-3-phosphateacyltransferase 493416 3122005 PBPRA0468 Photobacterium profundum SS9 1-acyl-sn-glycerol-3-phosphateacyltransferase YP_128701.1 492691 D 298386 CDS YP_128702.1 54307682 3122444 493585..494127 1 NC_006370.1 isopentenyldiphosphate isomerase 494127 3122444 PBPRA0469 Photobacterium profundum SS9 isopentenyldiphosphate isomerase YP_128702.1 493585 D 298386 CDS YP_128703.1 54307683 3122356 complement(494511..494897) 1 NC_006370.1 translation initiation inhibitor 494897 3122356 PBPRA0470 Photobacterium profundum SS9 translation initiation inhibitor YP_128703.1 494511 R 298386 CDS YP_128704.1 54307684 3122102 complement(495046..495540) 1 NC_006370.1 hypothetical protein 495540 3122102 PBPRA0471 Photobacterium profundum SS9 hypothetical protein YP_128704.1 495046 R 298386 CDS YP_128705.1 54307685 3122039 complement(495698..496693) 1 NC_006370.1 hypothetical protein 496693 3122039 PBPRA0472 Photobacterium profundum SS9 hypothetical protein YP_128705.1 495698 R 298386 CDS YP_128706.1 54307686 3122654 complement(496907..497410) 1 NC_006370.1 involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase 497410 3122654 PBPRA0473 Photobacterium profundum SS9 aspartate carbamoyltransferase YP_128706.1 496907 R 298386 CDS YP_128707.1 54307687 3124443 complement(497388..498317) 1 NC_006370.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 498317 pyrB 3124443 pyrB Photobacterium profundum SS9 aspartate carbamoyltransferase YP_128707.1 497388 R 298386 CDS YP_128708.1 54307688 3122547 complement(498779..499789) 1 NC_006370.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase 499789 3122547 PBPRA0475 Photobacterium profundum SS9 ornithine carbamoyltransferase YP_128708.1 498779 R 298386 CDS YP_128709.1 54307689 3122174 complement(499913..500824) 1 NC_006370.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 500824 3122174 PBPRA0476 Photobacterium profundum SS9 carbamate kinase YP_128709.1 499913 R 298386 CDS YP_128710.1 54307690 3122045 complement(500945..502165) 1 NC_006370.1 catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 502165 3122045 PBPRA0477 Photobacterium profundum SS9 arginine deiminase YP_128710.1 500945 R 298386 CDS YP_128711.1 54307691 3122111 complement(503339..504784) 1 NC_006370.1 hypothetical protein 504784 3122111 PBPRA0478 Photobacterium profundum SS9 hypothetical protein YP_128711.1 503339 R 298386 CDS YP_128712.1 54307692 3122093 505530..505937 1 NC_006370.1 hypothetical protein 505937 3122093 PBPRA0479 Photobacterium profundum SS9 hypothetical protein YP_128712.1 505530 D 298386 CDS YP_128713.1 54307693 3124199 506166..508604 1 NC_006370.1 beta-mannosidase precursor 508604 3124199 PBPRA0480 Photobacterium profundum SS9 beta-mannosidase precursor YP_128713.1 506166 D 298386 CDS YP_128714.1 54307694 3122370 complement(508707..509648) 1 NC_006370.1 MarR family transcriptional regulator 509648 3122370 PBPRA0481 Photobacterium profundum SS9 MarR family transcriptional regulator YP_128714.1 508707 R 298386 CDS YP_128715.1 54307695 3122464 complement(509741..510340) 1 NC_006370.1 hypothetical protein 510340 3122464 PBPRA0482 Photobacterium profundum SS9 hypothetical protein YP_128715.1 509741 R 298386 CDS YP_128716.1 54307696 3122410 complement(510398..513334) 1 NC_006370.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 513334 valS 3122410 valS Photobacterium profundum SS9 valyl-tRNA synthetase YP_128716.1 510398 R 298386 CDS YP_128717.1 54307697 3122668 complement(513791..515299) 1 NC_006370.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 515299 3122668 PBPRA0484 Photobacterium profundum SS9 leucyl aminopeptidase YP_128717.1 513791 R 298386 CDS YP_128718.1 54307698 3122631 515495..516595 1 NC_006370.1 permease 516595 3122631 PBPRA0485 Photobacterium profundum SS9 permease YP_128718.1 515495 D 298386 CDS YP_128719.1 54307699 3122872 516595..517665 1 NC_006370.1 permease 517665 3122872 PBPRA0486 Photobacterium profundum SS9 permease YP_128719.1 516595 D 298386 CDS YP_128720.1 54307700 3122682 517814..518080 1 NC_006370.1 hypothetical protein 518080 3122682 PBPRA0487 Photobacterium profundum SS9 hypothetical protein YP_128720.1 517814 D 298386 CDS YP_128721.1 54307701 3123140 518074..518865 1 NC_006370.1 hypothetical protein 518865 3123140 PBPRA0488 Photobacterium profundum SS9 hypothetical protein YP_128721.1 518074 D 298386 CDS YP_128722.1 54307702 3123079 518870..519199 1 NC_006370.1 Tn5 transposase 519199 3123079 PBPRA0489 Photobacterium profundum SS9 Tn5 transposase YP_128722.1 518870 D 298386 CDS YP_128723.1 54307703 3125345 complement(519246..519737) 1 NC_006370.1 hypothetical protein 519737 3125345 PBPRA0490 Photobacterium profundum SS9 hypothetical protein YP_128723.1 519246 R 298386 CDS YP_128724.1 54307704 3123165 complement(520344..520601) 1 NC_006370.1 hypothetical protein 520601 3123165 PBPRA0492 Photobacterium profundum SS9 hypothetical protein YP_128724.1 520344 R 298386 CDS YP_128725.1 54307705 3125304 520969..521310 1 NC_006370.1 hypothetical protein 521310 3125304 PBPRA0493 Photobacterium profundum SS9 hypothetical protein YP_128725.1 520969 D 298386 CDS YP_128726.1 54307706 3122536 complement(521400..522707) 1 NC_006370.1 deacetylase DA1 522707 3122536 PBPRA0494 Photobacterium profundum SS9 deacetylase DA1 YP_128726.1 521400 R 298386 CDS YP_128727.1 54307707 3123461 523124..523234 1 NC_006370.1 phosphotransferase system cellobiose-specific component IIB 523234 3123461 PBPRA0495 Photobacterium profundum SS9 phosphotransferase system cellobiose-specific component IIB YP_128727.1 523124 D 298386 CDS YP_128728.1 54307708 3124192 523486..524814 1 NC_006370.1 phosphotransferase system cellobiose-specific component IIC 524814 3124192 PBPRA0496 Photobacterium profundum SS9 phosphotransferase system cellobiose-specific component IIC YP_128728.1 523486 D 298386 CDS YP_128729.1 54307709 3123444 524884..526197 1 NC_006370.1 6-phospho-beta-glucosidase 526197 3123444 PBPRA0497 Photobacterium profundum SS9 6-phospho-beta-glucosidase YP_128729.1 524884 D 298386 CDS YP_128730.1 54307710 3125470 526260..526997 1 NC_006370.1 hypothetical protein 526997 3125470 PBPRA0498 Photobacterium profundum SS9 hypothetical protein YP_128730.1 526260 D 298386 CDS YP_128731.1 54307711 3123604 527273..528007 1 NC_006370.1 LacI family transcriptional regulator 528007 3123604 PBPRA0499 Photobacterium profundum SS9 LacI family transcriptional regulator YP_128731.1 527273 D 298386 CDS YP_128732.1 54307712 3122690 528031..528270 1 NC_006370.1 hypothetical protein 528270 3122690 PBPRA0500 Photobacterium profundum SS9 hypothetical protein YP_128732.1 528031 D 298386 CDS YP_128733.1 54307713 3123180 528427..529089 1 NC_006370.1 hypothetical protein 529089 3123180 PBPRA0501 Photobacterium profundum SS9 hypothetical protein YP_128733.1 528427 D 298386 CDS YP_128734.1 54307714 3123027 complement(535412..535798) 1 NC_006370.1 hypothetical protein 535798 3123027 PBPRA0509 Photobacterium profundum SS9 hypothetical protein YP_128734.1 535412 R 298386 CDS YP_128735.1 54307715 3124747 complement(536061..536558) 1 NC_006370.1 transposase 536558 3124747 PBPRA0510 Photobacterium profundum SS9 transposase YP_128735.1 536061 R 298386 CDS YP_128736.1 54307716 3124063 complement(536703..537719) 1 NC_006370.1 transposase 537719 3124063 PBPRA0511 Photobacterium profundum SS9 transposase YP_128736.1 536703 R 298386 CDS YP_128737.1 54307717 3124113 complement(537931..538494) 1 NC_006370.1 transposase 538494 3124113 PBPRA0512 Photobacterium profundum SS9 transposase YP_128737.1 537931 R 298386 CDS YP_128738.1 54307718 3124121 complement(538496..538966) 1 NC_006370.1 transposase and inactivatedderivatives 538966 3124121 PBPRA0513 Photobacterium profundum SS9 transposase and inactivatedderivatives YP_128738.1 538496 R 298386 CDS YP_128739.1 54307719 3124246 539245..540525 1 NC_006370.1 hypothetical protein 540525 3124246 PBPRA0514 Photobacterium profundum SS9 hypothetical protein YP_128739.1 539245 D 298386 CDS YP_128740.1 54307720 3124135 complement(540867..541388) 1 NC_006370.1 transposase 541388 3124135 PBPRA0515 Photobacterium profundum SS9 transposase YP_128740.1 540867 R 298386 CDS YP_128741.1 54307721 3124477 complement(541673..543085) 1 NC_006370.1 phosphoglucomutase/phosphomannomutase 543085 3124477 PBPRA0516 Photobacterium profundum SS9 phosphoglucomutase/phosphomannomutase YP_128741.1 541673 R 298386 CDS YP_128742.1 54307722 3124685 complement(543150..545555) 1 NC_006370.1 N,N-diacetylchitobiose phosphorylase 545555 3124685 PBPRA0517 Photobacterium profundum SS9 N,N-diacetylchitobiose phosphorylase YP_128742.1 543150 R 298386 CDS YP_128743.1 54307723 3124735 complement(545595..547526) 1 NC_006370.1 N-acetyl-beta-hexosaminidase 547526 3124735 PBPRA0518 Photobacterium profundum SS9 N-acetyl-beta-hexosaminidase YP_128743.1 545595 R 298386 CDS YP_128744.1 54307724 3123215 complement(547536..548423) 1 NC_006370.1 N-acetylglucosamine kinase 548423 3123215 PBPRA0519 Photobacterium profundum SS9 N-acetylglucosamine kinase YP_128744.1 547536 R 298386 CDS YP_128745.1 54307725 3124327 complement(548416..550152) 1 NC_006370.1 endoglucanase-related protein 550152 3124327 PBPRA0520 Photobacterium profundum SS9 endoglucanase-related protein YP_128745.1 548416 R 298386 CDS YP_128746.1 54307726 3124335 complement(550194..551189) 1 NC_006370.1 ABC-type oligopeptide transport system, ATPase component 551189 3124335 PBPRA0521 Photobacterium profundum SS9 ABC-type oligopeptide transport system, ATPase component YP_128746.1 550194 R 298386 CDS YP_128747.1 54307727 3124581 complement(551218..552189) 1 NC_006370.1 peptide ABC transporter, ATP-binding protein 552189 3124581 PBPRA0522 Photobacterium profundum SS9 peptide ABC transporter, ATP-binding protein YP_128747.1 551218 R 298386 CDS YP_128748.1 54307728 3124557 complement(552189..553217) 1 NC_006370.1 peptide ABC transporter, permeaseprotein 553217 3124557 PBPRA0523 Photobacterium profundum SS9 peptide ABC transporter, permeaseprotein YP_128748.1 552189 R 298386 CDS YP_128749.1 54307729 3125409 complement(553220..554206) 1 NC_006370.1 peptide ABC transporter, permease protein 554206 3125409 PBPRA0524 Photobacterium profundum SS9 peptide ABC transporter, permease protein YP_128749.1 553220 R 298386 CDS YP_128750.1 54307730 3124418 complement(554348..556027) 1 NC_006370.1 peptide ABC transporter, periplasmicpeptide-binding protein 556027 3124418 PBPRA0525 Photobacterium profundum SS9 peptide ABC transporter, periplasmicpeptide-binding protein YP_128750.1 554348 R 298386 CDS YP_128751.1 54307731 3124444 complement(556781..560176) 1 NC_006370.1 sensory box sensor histidine kinase/response regulator 560176 3124444 PBPRA0526 Photobacterium profundum SS9 sensory box sensor histidine kinase/response regulator YP_128751.1 556781 R 298386 CDS YP_128752.1 54307732 3124238 complement(560502..561521) 1 NC_006370.1 hypothetical protein 561521 3124238 PBPRA0527 Photobacterium profundum SS9 hypothetical protein YP_128752.1 560502 R 298386 CDS YP_128753.1 54307733 3124338 complement(561645..562730) 1 NC_006370.1 permease 562730 3124338 PBPRA0528 Photobacterium profundum SS9 permease YP_128753.1 561645 R 298386 CDS YP_128754.1 54307734 3124012 complement(563052..564350) 1 NC_006370.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 564350 3124012 PBPRA0529 Photobacterium profundum SS9 glutamate-1-semialdehyde aminotransferase YP_128754.1 563052 R 298386 CDS YP_128755.1 54307735 3124122 564591..565994 1 NC_006370.1 Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation; chloride channel protein 565994 3124122 PBPRA0530 Photobacterium profundum SS9 chloride channel protein YP_128755.1 564591 D 298386 CDS YP_128756.1 54307736 3123495 566055..566396 1 NC_006370.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 566396 3123495 PBPRA0531 Photobacterium profundum SS9 iron-sulfur cluster insertion protein ErpA YP_128756.1 566055 D 298386 CDS YP_128757.1 54307737 3124011 complement(566519..567844) 1 NC_006370.1 hypothetical protein 567844 3124011 PBPRA0532 Photobacterium profundum SS9 hypothetical protein YP_128757.1 566519 R 298386 CDS YP_128758.1 54307738 3123720 567971..569158 1 NC_006370.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 569158 3123720 PBPRA0533 Photobacterium profundum SS9 tyrosyl-tRNA synthetase YP_128758.1 567971 D 298386 CDS YP_128759.1 54307739 3123991 569282..569896 1 NC_006370.1 DedA family protein 569896 3123991 PBPRA0534 Photobacterium profundum SS9 DedA family protein YP_128759.1 569282 D 298386 CDS YP_128760.1 54307740 3123570 complement(570064..570675) 1 NC_006370.1 hypothetical protein 570675 3123570 PBPRA0535 Photobacterium profundum SS9 hypothetical protein YP_128760.1 570064 R 298386 CDS YP_128761.1 54307741 3125228 complement(570797..571621) 1 NC_006370.1 hypothetical protein 571621 3125228 PBPRA0536 Photobacterium profundum SS9 hypothetical protein YP_128761.1 570797 R 298386 CDS YP_128762.1 54307742 3124289 complement(571622..572578) 1 NC_006370.1 catalyzes the formation of adenosylcobinamide-phosphate from adenosylcobyric acid; adenosylcobinamide-phosphate synthase 572578 3124289 PBPRA0537 Photobacterium profundum SS9 adenosylcobinamide-phosphate synthase YP_128762.1 571622 R 298386 CDS YP_128763.1 54307743 3125411 complement(572578..573276) 1 NC_006370.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 573276 3125411 PBPRA0538 Photobacterium profundum SS9 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_128763.1 572578 R 298386 CDS YP_128764.1 54307744 3123141 complement(573461..574873) 1 NC_006370.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 574873 gltD 3123141 gltD Photobacterium profundum SS9 glutamate synthase subunit beta YP_128764.1 573461 R 298386 CDS YP_128765.1 54307745 3123448 complement(574889..579394) 1 NC_006370.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 579394 gltB 3123448 gltB Photobacterium profundum SS9 glutamate synthase subunit alpha YP_128765.1 574889 R 298386 CDS YP_128766.1 54307746 3123466 complement(579782..581254) 1 NC_006370.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 581254 gltD 3123466 gltD Photobacterium profundum SS9 glutamate synthase subunit beta YP_128766.1 579782 R 298386 CDS YP_128767.1 54307747 3124939 complement(581247..585794) 1 NC_006370.1 glutamate synthase, large subunit 585794 3124939 PBPRA0542 Photobacterium profundum SS9 glutamate synthase, large subunit YP_128767.1 581247 R 298386 CDS YP_128768.1 54307748 3123329 586442..587386 1 NC_006370.1 Fe-S oxidoreductase 587386 3123329 PBPRA0543 Photobacterium profundum SS9 Fe-S oxidoreductase YP_128768.1 586442 D 298386 CDS YP_128769.1 54307749 3123441 587505..589331 1 NC_006370.1 sensory box/GGDEF family protein 589331 3123441 PBPRA0544 Photobacterium profundum SS9 sensory box/GGDEF family protein YP_128769.1 587505 D 298386 CDS YP_128770.2 161936330 3123174 589481..591877 1 NC_006370.1 sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; aerobic respiration control sensor protein ArcB 591877 3123174 PBPRA0545 Photobacterium profundum SS9 aerobic respiration control sensor protein ArcB YP_128770.2 589481 D 298386 CDS YP_128771.1 54307751 3122968 592017..592451 1 NC_006370.1 hypothetical protein 592451 3122968 PBPRA0546 Photobacterium profundum SS9 hypothetical protein YP_128771.1 592017 D 298386 CDS YP_128772.1 54307752 3123086 complement(592581..593300) 1 NC_006370.1 two-component response regulator 593300 3123086 PBPRA0547 Photobacterium profundum SS9 two-component response regulator YP_128772.1 592581 R 298386 CDS YP_128773.1 54307753 3124945 593683..594096 1 NC_006370.1 hypothetical protein 594096 3124945 PBPRA0548 Photobacterium profundum SS9 hypothetical protein YP_128773.1 593683 D 298386 CDS YP_128774.1 54307754 3123170 594171..594662 1 NC_006370.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 594662 3123170 PBPRA0549 Photobacterium profundum SS9 ribonuclease activity regulator protein RraA YP_128774.1 594171 D 298386 CDS YP_128775.1 54307755 3122300 complement(594763..595218) 1 NC_006370.1 hypothetical protein 595218 3122300 PBPRA0550 Photobacterium profundum SS9 hypothetical protein YP_128775.1 594763 R 298386 CDS YP_128776.1 54307756 3122314 complement(595386..597113) 1 NC_006370.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 597113 aceK 3122314 aceK Photobacterium profundum SS9 bifunctional isocitrate dehydrogenase kinase/phosphatase protein YP_128776.1 595386 R 298386 CDS YP_128777.1 54307757 3125244 597569..600028 1 NC_006370.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homeserine dehydrogenase I 600028 thrA 3125244 thrA Photobacterium profundum SS9 bifunctional aspartokinase I/homeserine dehydrogenase I YP_128777.1 597569 D 298386 CDS YP_128778.1 54307758 3123577 600031..600987 1 NC_006370.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 600987 3123577 PBPRA0553 Photobacterium profundum SS9 homoserine kinase YP_128778.1 600031 D 298386 CDS YP_128779.1 54307759 3124220 600990..602276 1 NC_006370.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 602276 3124220 PBPRA0554 Photobacterium profundum SS9 threonine synthase YP_128779.1 600990 D 298386 CDS YP_128780.1 54307760 3122574 complement(602342..603562) 1 NC_006370.1 sodium:dicarboxylate symporter 603562 3122574 PBPRA0555 Photobacterium profundum SS9 sodium:dicarboxylate symporter YP_128780.1 602342 R 298386 CDS YP_128781.2 161936329 3122818 complement(603832..604209) 1 NC_006370.1 stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA 604209 3122818 PBPRA0556 Photobacterium profundum SS9 autonomous glycyl radical cofactor GrcA YP_128781.2 603832 R 298386 CDS YP_128782.1 54307762 3125166 604560..605399 1 NC_006370.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 605399 3125166 PBPRA0557 Photobacterium profundum SS9 endonuclease IV YP_128782.1 604560 D 298386 CDS YP_128783.1 54307763 3122745 605801..606484 1 NC_006370.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 606484 3122745 PBPRA0558 Photobacterium profundum SS9 uracil-DNA glycosylase YP_128783.1 605801 D 298386 CDS YP_128784.1 54307764 3124398 606632..607165 1 NC_006370.1 hypothetical protein 607165 3124398 PBPRA0559 Photobacterium profundum SS9 hypothetical protein YP_128784.1 606632 D 298386 CDS YP_128785.1 54307765 3122649 608355..609788 1 NC_006370.1 sodium/alanine symporter 609788 3122649 PBPRA0560 Photobacterium profundum SS9 sodium/alanine symporter YP_128785.1 608355 D 298386 CDS YP_128786.1 54307766 3123070 609894..610673 1 NC_006370.1 hypothetical protein 610673 3123070 PBPRA0561 Photobacterium profundum SS9 hypothetical protein YP_128786.1 609894 D 298386 CDS YP_128787.1 54307767 3122503 complement(610816..612075) 1 NC_006370.1 facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 612075 3122503 PBPRA0562 Photobacterium profundum SS9 ATP-dependent RNA helicase SrmB YP_128787.1 610816 R 298386 CDS YP_128788.1 54307768 3125390 complement(612270..613061) 1 NC_006370.1 O-methyltransferase 613061 3125390 PBPRA0563 Photobacterium profundum SS9 O-methyltransferase YP_128788.1 612270 R 298386 CDS YP_128789.1 54307769 3122522 613454..614761 1 NC_006370.1 branched chain amino acid transport system II carrier protein 614761 3122522 PBPRA0564 Photobacterium profundum SS9 branched chain amino acid transport system II carrier protein YP_128789.1 613454 D 298386 CDS YP_128790.1 54307770 3122566 complement(614863..615384) 1 NC_006370.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic; flavodoxin FldB 615384 3122566 PBPRA0565 Photobacterium profundum SS9 flavodoxin FldB YP_128790.1 614863 R 298386 CDS YP_128791.1 54307771 3121994 615616..616494 1 NC_006370.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 616494 xerD 3121994 xerD Photobacterium profundum SS9 site-specific tyrosine recombinase XerD YP_128791.1 615616 D 298386 CDS YP_128792.1 54307772 3122397 616624..617346 1 NC_006370.1 hypothetical protein 617346 3122397 PBPRA0567 Photobacterium profundum SS9 hypothetical protein YP_128792.1 616624 D 298386 CDS YP_128793.2 161936328 3122457 617519..619243 1 NC_006370.1 5'-3' single-stranded-DNA-specific exonuclease; ssDNA exonuclease RecJ 619243 3122457 PBPRA0568 Photobacterium profundum SS9 ssDNA exonuclease RecJ YP_128793.2 617519 D 298386 CDS YP_128794.1 54307774 3122268 619486..620547 1 NC_006370.1 peptide chain release factor 2 620547 3122268 PBPRA0569 Photobacterium profundum SS9 peptide chain release factor 2 YP_128794.1 619486 D 298386 CDS YP_128795.1 54307775 3124097 620583..622091 1 NC_006370.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 622091 lysS 3124097 lysS Photobacterium profundum SS9 lysyl-tRNA synthetase YP_128795.1 620583 D 298386 CDS YP_128796.1 54307776 3125119 622890..624164 1 NC_006370.1 Sodium/glutamate symporter 624164 3125119 PBPRA0571 Photobacterium profundum SS9 Sodium/glutamate symporter YP_128796.1 622890 D 298386 CDS YP_128797.1 54307777 3124737 624438..625895 1 NC_006370.1 sigma-54 dependent transcriptional regulator 625895 3124737 PBPRA0572 Photobacterium profundum SS9 sigma-54 dependent transcriptional regulator YP_128797.1 624438 D 298386 CDS YP_128798.1 54307778 3125376 626376..626636 1 NC_006370.1 hypothetical protein 626636 3125376 PBPRA0573 Photobacterium profundum SS9 hypothetical protein YP_128798.1 626376 D 298386 CDS YP_128799.1 54307779 3124301 complement(626922..627956) 1 NC_006370.1 oxidoreductase 627956 3124301 PBPRA0574 Photobacterium profundum SS9 oxidoreductase YP_128799.1 626922 R 298386 CDS YP_128800.1 54307780 3125278 628131..628433 1 NC_006370.1 hypothetical protein 628433 3125278 PBPRA0575 Photobacterium profundum SS9 hypothetical protein YP_128800.1 628131 D 298386 CDS YP_128801.1 54307781 3123929 complement(628490..629158) 1 NC_006370.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 629158 3123929 PBPRA0576 Photobacterium profundum SS9 DNA mismatch repair protein YP_128801.1 628490 R 298386 CDS YP_128802.1 54307782 3124851 630067..630591 1 NC_006370.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 630591 3124851 PBPRA0577 Photobacterium profundum SS9 dinucleoside polyphosphate hydrolase YP_128802.1 630067 D 298386 CDS YP_128803.1 54307783 3125261 630635..632890 1 NC_006370.1 member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr; fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain 632890 3125261 PBPRA0578 Photobacterium profundum SS9 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain YP_128803.1 630635 D 298386 CDS YP_128804.1 54307784 3122641 632922..633725 1 NC_006370.1 hypothetical protein 633725 3122641 PBPRA0579 Photobacterium profundum SS9 hypothetical protein YP_128804.1 632922 D 298386 CDS YP_128805.1 54307785 3122895 633812..634612 1 NC_006370.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 634612 3122895 PBPRA0580 Photobacterium profundum SS9 prolipoprotein diacylglyceryl transferase YP_128805.1 633812 D 298386 CDS YP_128806.1 54307786 3124233 634773..635624 1 NC_006370.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 635624 thyA 3124233 thyA Photobacterium profundum SS9 thymidylate synthase YP_128806.1 634773 D 298386 CDS YP_128807.1 54307787 3124792 complement(635752..637062) 1 NC_006370.1 sodium-dependent phosphate pump NptA 637062 3124792 PBPRA0582 Photobacterium profundum SS9 sodium-dependent phosphate pump NptA YP_128807.1 635752 R 298386 CDS YP_128808.1 54307788 3124944 637377..638534 1 NC_006370.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 638534 nhaA 3124944 nhaA Photobacterium profundum SS9 pH-dependent sodium/proton antiporter YP_128808.1 637377 D 298386 CDS YP_128809.1 54307789 3125446 638536..638805 1 NC_006370.1 hypothetical protein 638805 3125446 PBPRA0584 Photobacterium profundum SS9 hypothetical protein YP_128809.1 638536 D 298386 CDS YP_128810.1 54307790 3124835 638899..639786 1 NC_006370.1 Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 639786 nhaR 3124835 nhaR Photobacterium profundum SS9 transcriptional activator NhaR YP_128810.1 638899 D 298386 CDS YP_128811.1 54307791 3125415 639883..640176 1 NC_006370.1 transcription activator HlyU 640176 3125415 PBPRA0586 Photobacterium profundum SS9 transcription activator HlyU YP_128811.1 639883 D 298386 CDS YP_128812.1 54307792 3125393 complement(640286..640579) 1 NC_006370.1 ribosomal protein S20 640579 3125393 PBPRA0587 Photobacterium profundum SS9 ribosomal protein S20 YP_128812.1 640286 R 298386 CDS YP_128813.1 54307793 3122401 640631..641662 1 NC_006370.1 MviN protein 641662 3122401 PBPRA0588 Photobacterium profundum SS9 MviN protein YP_128813.1 640631 D 298386 CDS YP_128814.1 54307794 3124840 641716..642312 1 NC_006370.1 hypothetical protein 642312 3124840 PBPRA0589 Photobacterium profundum SS9 hypothetical protein YP_128814.1 641716 D 298386 CDS YP_128815.2 161936327 3125357 642376..643347 1 NC_006370.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 643347 3125357 PBPRA0590 Photobacterium profundum SS9 bifunctional riboflavin kinase/FMN adenylyltransferase YP_128815.2 642376 D 298386 CDS YP_128816.1 54307796 3125510 643344..646208 1 NC_006370.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 646208 ileS 3125510 ileS Photobacterium profundum SS9 isoleucyl-tRNA synthetase YP_128816.1 643344 D 298386 CDS YP_128817.1 54307797 3124589 646268..646732 1 NC_006370.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 646732 lspA 3124589 lspA Photobacterium profundum SS9 lipoprotein signal peptidase YP_128817.1 646268 D 298386 CDS YP_128818.1 54307798 3124401 646919..647353 1 NC_006370.1 peptidyl-prolyl cis-trans isomerase, FKBP-type 647353 3124401 PBPRA0593 Photobacterium profundum SS9 peptidyl-prolyl cis-trans isomerase, FKBP-type YP_128818.1 646919 D 298386 CDS YP_128819.1 54307799 3123666 647366..648307 1 NC_006370.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 648307 ispH 3123666 ispH Photobacterium profundum SS9 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_128819.1 647366 D 298386 CDS YP_128820.2 229557968 3123249 648431..649240 1 NC_006370.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 649240 3123249 PBPRA0595 Photobacterium profundum SS9 dihydrodipicolinate reductase YP_128820.2 648431 D 298386 CDS YP_128821.1 54307801 3125111 649764..650918 1 NC_006370.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 650918 3125111 PBPRA0596 Photobacterium profundum SS9 carbamoyl phosphate synthase small subunit YP_128821.1 649764 D 298386 CDS YP_128822.1 54307802 3124711 650935..654168 1 NC_006370.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 654168 carB 3124711 carB Photobacterium profundum SS9 carbamoyl phosphate synthase large subunit YP_128822.1 650935 D 298386 CDS YP_128823.1 54307803 3122942 654638..655546 1 NC_006370.1 hypothetical protein 655546 3122942 PBPRA0598 Photobacterium profundum SS9 hypothetical protein YP_128823.1 654638 D 298386 CDS YP_128824.1 54307804 3122062 complement(655647..657065) 1 NC_006370.1 penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase/endopeptidase 657065 3122062 PBPRA0599 Photobacterium profundum SS9 D-alanyl-D-alanine carboxypeptidase/endopeptidase YP_128824.1 655647 R 298386 CDS YP_128825.1 54307805 3124270 complement(657179..658204) 1 NC_006370.1 ompL_phopr porin-like protein L precursor 658204 3124270 PBPRA0600 Photobacterium profundum SS9 ompL_phopr porin-like protein L precursor YP_128825.1 657179 R 298386 CDS YP_128826.1 54307806 3124381 658663..659163 1 NC_006370.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 659163 greA 3124381 greA Photobacterium profundum SS9 transcription elongation factor GreA YP_128826.1 658663 D 298386 CDS YP_128827.1 54307807 3124511 complement(659301..659633) 1 NC_006370.1 RNA-binding protein 659633 3124511 PBPRA0602 Photobacterium profundum SS9 RNA-binding protein YP_128827.1 659301 R 298386 CDS YP_128828.1 54307808 3123905 659737..660366 1 NC_006370.1 Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase 660366 rrmJ 3123905 rrmJ Photobacterium profundum SS9 23S rRNA methyltransferase YP_128828.1 659737 D 298386 CDS YP_128829.1 54307809 3122821 660341..662431 1 NC_006370.1 cell division protein FtsH 662431 3122821 PBPRA0604 Photobacterium profundum SS9 cell division protein FtsH YP_128829.1 660341 D 298386 CDS YP_128830.1 54307810 3122301 662539..663336 1 NC_006370.1 dihydropteroate synthase 663336 3122301 PBPRA0605 Photobacterium profundum SS9 dihydropteroate synthase YP_128830.1 662539 D 298386 CDS YP_128831.1 54307811 3122749 663661..664764 1 NC_006370.1 phosphoglucomutase/phosphomannomutasefamily protein MrsA 664764 3122749 PBPRA0606 Photobacterium profundum SS9 phosphoglucomutase/phosphomannomutasefamily protein MrsA YP_128831.1 663661 D 298386 CDS YP_128832.1 54307812 3122752 664992..665327 1 NC_006370.1 protein export-membrane protein 665327 3122752 PBPRA0607 Photobacterium profundum SS9 protein export-membrane protein YP_128832.1 664992 D 298386 CDS YP_128833.1 54307813 3123770 665737..666192 1 NC_006370.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 666192 3123770 PBPRA0610 Photobacterium profundum SS9 hypothetical protein YP_128833.1 665737 D 298386 CDS YP_128834.1 54307814 3124298 666215..667702 1 NC_006370.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 667702 nusA 3124298 nusA Photobacterium profundum SS9 transcription elongation factor NusA YP_128834.1 666215 D 298386 CDS YP_128835.1 54307815 3125047 667730..670429 1 NC_006370.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 670429 infB 3125047 infB Photobacterium profundum SS9 translation initiation factor IF-2 YP_128835.1 667730 D 298386 CDS YP_128836.1 54307816 3122802 670653..670958 1 NC_006370.1 ribosome-binding factor A 670958 3122802 PBPRA0613 Photobacterium profundum SS9 ribosome-binding factor A YP_128836.1 670653 D 298386 CDS YP_128837.1 54307817 3125036 670958..671908 1 NC_006370.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 671908 truB 3125036 truB Photobacterium profundum SS9 tRNA pseudouridine synthase B YP_128837.1 670958 D 298386 CDS YP_128838.1 54307818 3124149 672077..672346 1 NC_006370.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 672346 rpsO 3124149 rpsO Photobacterium profundum SS9 30S ribosomal protein S15 YP_128838.1 672077 D 298386 CDS YP_128839.1 54307819 3122127 672632..674755 1 NC_006370.1 polynucleotide phosphorylase 674755 3122127 PBPRA0616 Photobacterium profundum SS9 polynucleotide phosphorylase YP_128839.1 672632 D 298386 CDS YP_128840.1 54307820 3124863 674837..675730 1 NC_006370.1 lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 675730 3124863 PBPRA0617 Photobacterium profundum SS9 lipoprotein NlpI YP_128840.1 674837 D 298386 CDS YP_128841.1 54307821 3122855 complement(675838..676734) 1 NC_006370.1 protease 676734 3122855 PBPRA0618 Photobacterium profundum SS9 protease YP_128841.1 675838 R 298386 CDS YP_128842.1 54307822 3122766 complement(676725..677732) 1 NC_006370.1 protease 677732 3122766 PBPRA0619 Photobacterium profundum SS9 protease YP_128842.1 676725 R 298386 CDS YP_128843.1 54307823 3124125 complement(677875..679914) 1 NC_006370.1 c-di-GMP phosphodiesterase A-related protein 679914 3124125 PBPRA0620 Photobacterium profundum SS9 c-di-GMP phosphodiesterase A-related protein YP_128843.1 677875 R 298386 CDS YP_128844.1 54307824 3124281 680179..680700 1 NC_006370.1 lipid carrier protein 680700 3124281 PBPRA0621 Photobacterium profundum SS9 lipid carrier protein YP_128844.1 680179 D 298386 CDS YP_128845.1 54307825 3122506 680690..681193 1 NC_006370.1 acetyltransferase 681193 3122506 PBPRA0622 Photobacterium profundum SS9 acetyltransferase YP_128845.1 680690 D 298386 CDS YP_128846.1 54307826 3123279 681363..681764 1 NC_006370.1 DNA polymerase III, psi subunit 681764 3123279 PBPRA0623 Photobacterium profundum SS9 DNA polymerase III, psi subunit YP_128846.1 681363 D 298386 CDS YP_128847.1 54307827 3125338 681754..682200 1 NC_006370.1 ribosomal-protein-alanine acetyltransferase 682200 3125338 PBPRA0624 Photobacterium profundum SS9 ribosomal-protein-alanine acetyltransferase YP_128847.1 681754 D 298386 CDS YP_128848.1 54307828 3123561 682420..683397 1 NC_006370.1 peptide chain release factor RF-3 683397 3123561 PBPRA0625 Photobacterium profundum SS9 peptide chain release factor RF-3 YP_128848.1 682420 D 298386 CDS YP_128849.1 54307829 3123778 683400..683999 1 NC_006370.1 hypothetical protein 683999 3123778 PBPRA0626 Photobacterium profundum SS9 hypothetical protein YP_128849.1 683400 D 298386 CDS YP_128850.1 54307830 3123638 684177..686297 1 NC_006370.1 glycogen operon protein 686297 3123638 PBPRA0627 Photobacterium profundum SS9 glycogen operon protein YP_128850.1 684177 D 298386 CDS YP_128851.1 54307831 3123381 686412..687320 1 NC_006370.1 hypothetical protein 687320 3123381 PBPRA0628 Photobacterium profundum SS9 hypothetical protein YP_128851.1 686412 D 298386 CDS YP_128852.1 54307832 3123473 687541..688794 1 NC_006370.1 NupC family protein 688794 3123473 PBPRA0629 Photobacterium profundum SS9 NupC family protein YP_128852.1 687541 D 298386 CDS YP_128853.1 54307833 3123609 689607..690380 1 NC_006370.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 690380 3123609 PBPRA0630 Photobacterium profundum SS9 deoxyribose-phosphate aldolase YP_128853.1 689607 D 298386 CDS YP_128854.2 161936326 3124140 690582..691913 1 NC_006370.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 691913 deoA 3124140 deoA Photobacterium profundum SS9 thymidine phosphorylase YP_128854.2 690582 D 298386 CDS YP_128855.1 54307835 3124935 691924..693144 1 NC_006370.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 693144 3124935 PBPRA0632 Photobacterium profundum SS9 phosphopentomutase YP_128855.1 691924 D 298386 CDS YP_128856.1 54307836 3124092 693282..694007 1 NC_006370.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 694007 deoD 3124092 deoD Photobacterium profundum SS9 purine nucleoside phosphorylase YP_128856.1 693282 D 298386 CDS YP_128857.1 54307837 3123872 complement(694082..694702) 1 NC_006370.1 SerB-cotransposed membrane protein precursor 694702 3123872 PBPRA0634 Photobacterium profundum SS9 SerB-cotransposed membrane protein precursor YP_128857.1 694082 R 298386 CDS YP_128858.1 54307838 3122182 694966..695937 1 NC_006370.1 catalyzes the formation of serine from O-phosphoserine; phosphoserine phosphatase 695937 serB 3122182 serB Photobacterium profundum SS9 phosphoserine phosphatase YP_128858.1 694966 D 298386 CDS YP_128859.1 54307839 3125087 complement(696112..698463) 1 NC_006370.1 hypothetical protein 698463 3125087 PBPRA0636 Photobacterium profundum SS9 hypothetical protein YP_128859.1 696112 R 298386 CDS YP_128860.1 54307840 3125156 698610..699989 1 NC_006370.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 699989 3125156 PBPRA0637 Photobacterium profundum SS9 DNA repair protein RadA YP_128860.1 698610 D 298386 CDS YP_128861.1 54307841 3123996 complement(700197..701189) 1 NC_006370.1 ToxR-activated protein TagE 701189 3123996 PBPRA0638 Photobacterium profundum SS9 ToxR-activated protein TagE YP_128861.1 700197 R 298386 CDS YP_128862.1 54307842 3124521 complement(701206..701586) 1 NC_006370.1 hypothetical protein 701586 3124521 PBPRA0639 Photobacterium profundum SS9 hypothetical protein YP_128862.1 701206 R 298386 CDS YP_128863.1 54307843 3122618 complement(701867..703534) 1 NC_006370.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein 703534 3122618 PBPRA0640 Photobacterium profundum SS9 ABC transporter ATP-binding protein YP_128863.1 701867 R 298386 CDS YP_128864.1 54307844 3123058 703667..705601 1 NC_006370.1 soluble lytic murein transglycosylase 705601 3123058 PBPRA0641 Photobacterium profundum SS9 soluble lytic murein transglycosylase YP_128864.1 703667 D 298386 CDS YP_128865.1 54307845 3123186 705722..706033 1 NC_006370.1 When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 706033 3123186 PBPRA0642 Photobacterium profundum SS9 Trp operon repressor YP_128865.1 705722 D 298386 CDS YP_128866.1 54307846 3122899 complement(706146..706670) 1 NC_006370.1 pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase 706670 3122899 PBPRA0643 Photobacterium profundum SS9 NTPase YP_128866.1 706146 R 298386 CDS YP_128867.1 54307847 3123418 complement(707122..707814) 1 NC_006370.1 transcriptional regulator 707814 3123418 PBPRA0644 Photobacterium profundum SS9 transcriptional regulator YP_128867.1 707122 R 298386 CDS YP_128868.1 54307848 3123785 complement(708540..709352) 1 NC_006370.1 response regulator 709352 3123785 PBPRA0645 Photobacterium profundum SS9 response regulator YP_128868.1 708540 R 298386 CDS YP_128869.1 54307849 3125197 complement(709410..710447) 1 NC_006370.1 hypothetical protein 710447 3125197 PBPRA0646 Photobacterium profundum SS9 hypothetical protein YP_128869.1 709410 R 298386 CDS YP_128870.1 54307850 3122385 complement(710447..711805) 1 NC_006370.1 hypothetical protein 711805 3122385 PBPRA0647 Photobacterium profundum SS9 hypothetical protein YP_128870.1 710447 R 298386 CDS YP_128871.1 54307851 3125520 complement(711865..712689) 1 NC_006370.1 hypothetical protein 712689 3125520 PBPRA0648 Photobacterium profundum SS9 hypothetical protein YP_128871.1 711865 R 298386 CDS YP_128872.1 54307852 3122449 complement(712682..714016) 1 NC_006370.1 hypothetical protein 714016 3122449 PBPRA0649 Photobacterium profundum SS9 hypothetical protein YP_128872.1 712682 R 298386 CDS YP_128873.1 54307853 3122255 complement(714004..714702) 1 NC_006370.1 ABC transporter ATP-binding protein 714702 3122255 PBPRA0650 Photobacterium profundum SS9 ABC transporter ATP-binding protein YP_128873.1 714004 R 298386 CDS YP_128874.1 54307854 3124041 complement(714789..715487) 1 NC_006370.1 hypothetical protein 715487 3124041 PBPRA0651 Photobacterium profundum SS9 hypothetical protein YP_128874.1 714789 R 298386 CDS YP_128875.1 54307855 3122868 715750..716688 1 NC_006370.1 hypothetical protein 716688 3122868 PBPRA0652 Photobacterium profundum SS9 hypothetical protein YP_128875.1 715750 D 298386 CDS YP_128876.1 54307856 3122683 complement(716760..717380) 1 NC_006370.1 hypothetical protein 717380 3122683 PBPRA0653 Photobacterium profundum SS9 hypothetical protein YP_128876.1 716760 R 298386 CDS YP_128877.1 54307857 3122979 717589..718539 1 NC_006370.1 hypothetical protein 718539 3122979 PBPRA0654 Photobacterium profundum SS9 hypothetical protein YP_128877.1 717589 D 298386 CDS YP_128878.1 54307858 3124137 718443..718889 1 NC_006370.1 hypothetical protein 718889 3124137 PBPRA0655 Photobacterium profundum SS9 hypothetical protein YP_128878.1 718443 D 298386 CDS YP_128879.1 54307859 3124699 719070..719549 1 NC_006370.1 hypothetical protein 719549 3124699 PBPRA0656 Photobacterium profundum SS9 hypothetical protein YP_128879.1 719070 D 298386 CDS YP_128880.1 54307860 3124843 complement(719613..721811) 1 NC_006370.1 serine/threonine protein kinase 721811 3124843 PBPRA0657 Photobacterium profundum SS9 serine/threonine protein kinase YP_128880.1 719613 R 298386 CDS YP_128881.1 54307861 3125302 721945..723255 1 NC_006370.1 hypothetical protein 723255 3125302 PBPRA0658 Photobacterium profundum SS9 hypothetical protein YP_128881.1 721945 D 298386 CDS YP_128882.1 54307862 3122006 723258..723725 1 NC_006370.1 hypothetical protein 723725 3122006 PBPRA0659 Photobacterium profundum SS9 hypothetical protein YP_128882.1 723258 D 298386 CDS YP_128883.1 54307863 3122246 723881..725206 1 NC_006370.1 hypothetical protein 725206 3122246 PBPRA0660 Photobacterium profundum SS9 hypothetical protein YP_128883.1 723881 D 298386 CDS YP_128884.1 54307864 3124000 725233..726552 1 NC_006370.1 hypothetical protein 726552 3124000 PBPRA0661 Photobacterium profundum SS9 hypothetical protein YP_128884.1 725233 D 298386 CDS YP_128885.1 54307865 3124645 726552..730097 1 NC_006370.1 hypothetical protein 730097 3124645 PBPRA0662 Photobacterium profundum SS9 hypothetical protein YP_128885.1 726552 D 298386 CDS YP_128886.1 54307866 3125452 730052..730765 1 NC_006370.1 hypothetical protein 730765 3125452 PBPRA0663 Photobacterium profundum SS9 hypothetical protein YP_128886.1 730052 D 298386 CDS YP_128887.1 54307867 3123244 730681..731589 1 NC_006370.1 serine/threonine protein phosphatase 731589 3123244 PBPRA0664 Photobacterium profundum SS9 serine/threonine protein phosphatase YP_128887.1 730681 D 298386 CDS YP_128888.1 54307868 3124160 731589..732722 1 NC_006370.1 hypothetical protein 732722 3124160 PBPRA0665 Photobacterium profundum SS9 hypothetical protein YP_128888.1 731589 D 298386 CDS YP_128889.1 54307869 3123035 732758..733291 1 NC_006370.1 hypothetical protein 733291 3123035 PBPRA0666 Photobacterium profundum SS9 hypothetical protein YP_128889.1 732758 D 298386 CDS YP_128890.1 54307870 3122912 733291..734781 1 NC_006370.1 hypothetical protein 734781 3122912 PBPRA0667 Photobacterium profundum SS9 hypothetical protein YP_128890.1 733291 D 298386 CDS YP_128891.1 54307871 3122751 734842..736383 1 NC_006370.1 hypothetical protein 736383 3122751 PBPRA0668 Photobacterium profundum SS9 hypothetical protein YP_128891.1 734842 D 298386 CDS YP_128892.1 54307872 3123067 736388..737182 1 NC_006370.1 hypothetical protein 737182 3123067 PBPRA0669 Photobacterium profundum SS9 hypothetical protein YP_128892.1 736388 D 298386 CDS YP_128893.1 54307873 3124661 737337..737672 1 NC_006370.1 hypothetical protein 737672 3124661 PBPRA0670 Photobacterium profundum SS9 hypothetical protein YP_128893.1 737337 D 298386 CDS YP_128894.1 54307874 3122422 737674..739503 1 NC_006370.1 hypothetical protein 739503 3122422 PBPRA0671 Photobacterium profundum SS9 hypothetical protein YP_128894.1 737674 D 298386 CDS YP_128895.1 54307875 3123326 739467..740471 1 NC_006370.1 hypothetical protein 740471 3123326 PBPRA0672 Photobacterium profundum SS9 hypothetical protein YP_128895.1 739467 D 298386 CDS YP_128896.1 54307876 3122992 740336..743080 1 NC_006370.1 ATPase with chaperone activity 743080 3122992 PBPRA0673 Photobacterium profundum SS9 ATPase with chaperone activity YP_128896.1 740336 D 298386 CDS YP_128897.1 54307877 3122114 743312..743791 1 NC_006370.1 hypothetical protein 743791 3122114 PBPRA0674 Photobacterium profundum SS9 hypothetical protein YP_128897.1 743312 D 298386 CDS YP_128898.1 54307878 3123049 743850..745700 1 NC_006370.1 hypothetical protein 745700 3123049 PBPRA0675 Photobacterium profundum SS9 hypothetical protein YP_128898.1 743850 D 298386 CDS YP_128899.1 54307879 3123064 745739..746029 1 NC_006370.1 hypothetical protein 746029 3123064 PBPRA0676 Photobacterium profundum SS9 hypothetical protein YP_128899.1 745739 D 298386 CDS YP_128900.1 54307880 3125128 746042..747007 1 NC_006370.1 hypothetical protein 747007 3125128 PBPRA0677 Photobacterium profundum SS9 hypothetical protein YP_128900.1 746042 D 298386 CDS YP_128901.1 54307881 3122309 746998..751056 1 NC_006370.1 nucleotidyltransferase 751056 3122309 PBPRA0678 Photobacterium profundum SS9 nucleotidyltransferase YP_128901.1 746998 D 298386 CDS YP_128902.1 54307882 3122417 751084..751689 1 NC_006370.1 hypothetical protein 751689 3122417 PBPRA0679 Photobacterium profundum SS9 hypothetical protein YP_128902.1 751084 D 298386 CDS YP_128903.1 54307883 3124171 751807..753405 1 NC_006370.1 hypothetical protein 753405 3124171 PBPRA0680 Photobacterium profundum SS9 hypothetical protein YP_128903.1 751807 D 298386 CDS YP_128904.1 54307884 3122090 753398..753751 1 NC_006370.1 hypothetical protein 753751 3122090 PBPRA0681 Photobacterium profundum SS9 hypothetical protein YP_128904.1 753398 D 298386 CDS YP_128905.1 54307885 3123866 754269..754553 1 NC_006370.1 hypothetical protein 754553 3123866 PBPRA0682 Photobacterium profundum SS9 hypothetical protein YP_128905.1 754269 D 298386 CDS YP_128906.1 54307886 3124434 754813..755766 1 NC_006370.1 hypothetical protein 755766 3124434 PBPRA0683 Photobacterium profundum SS9 hypothetical protein YP_128906.1 754813 D 298386 CDS YP_128907.1 54307887 3125506 755772..756992 1 NC_006370.1 hypothetical protein 756992 3125506 PBPRA0684 Photobacterium profundum SS9 hypothetical protein YP_128907.1 755772 D 298386 CDS YP_128908.1 54307888 3123306 757277..759340 1 NC_006370.1 hypothetical protein 759340 3123306 PBPRA0685 Photobacterium profundum SS9 hypothetical protein YP_128908.1 757277 D 298386 CDS YP_128909.1 54307889 3124870 759400..761112 1 NC_006370.1 hypothetical protein 761112 3124870 PBPRA0686 Photobacterium profundum SS9 hypothetical protein YP_128909.1 759400 D 298386 CDS YP_128910.1 54307890 3122694 761245..763095 1 NC_006370.1 hypothetical protein 763095 3122694 PBPRA0687 Photobacterium profundum SS9 hypothetical protein YP_128910.1 761245 D 298386 CDS YP_128911.1 54307891 3125463 763173..764453 1 NC_006370.1 transposase of Tn5 764453 3125463 PBPRA0688 Photobacterium profundum SS9 transposase of Tn5 YP_128911.1 763173 D 298386 CDS YP_128912.1 54307892 3123378 764555..765991 1 NC_006370.1 hypothetical protein 765991 3123378 PBPRA0689 Photobacterium profundum SS9 hypothetical protein YP_128912.1 764555 D 298386 CDS YP_128913.1 54307893 3123318 complement(766645..767121) 1 NC_006370.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 767121 smpB 3123318 smpB Photobacterium profundum SS9 SsrA-binding protein YP_128913.1 766645 R 298386 CDS YP_128914.1 54307894 3123222 767354..767788 1 NC_006370.1 hypothetical protein 767788 3123222 PBPRA0691 Photobacterium profundum SS9 hypothetical protein YP_128914.1 767354 D 298386 CDS YP_128915.1 54307895 3123426 767778..768104 1 NC_006370.1 hypothetical protein 768104 3123426 PBPRA0692 Photobacterium profundum SS9 hypothetical protein YP_128915.1 767778 D 298386 CDS YP_128916.1 54307896 3123838 complement(768186..768542) 1 NC_006370.1 hypothetical protein 768542 3123838 PBPRA0693 Photobacterium profundum SS9 hypothetical protein YP_128916.1 768186 R 298386 CDS YP_128917.1 54307897 3122366 complement(768745..770412) 1 NC_006370.1 recombination and repair protein 770412 3122366 PBPRA0694 Photobacterium profundum SS9 recombination and repair protein YP_128917.1 768745 R 298386 CDS YP_128918.1 54307898 3123353 complement(770592..771473) 1 NC_006370.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 771473 ppnK 3123353 ppnK Photobacterium profundum SS9 inorganic polyphosphate/ATP-NAD kinase YP_128918.1 770592 R 298386 CDS YP_128919.1 54307899 3124190 771687..772307 1 NC_006370.1 heat shock protein GrpE 772307 3124190 PBPRA0696 Photobacterium profundum SS9 heat shock protein GrpE YP_128919.1 771687 D 298386 CDS YP_128920.1 54307900 3123539 772514..774433 1 NC_006370.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 774433 dnaK 3123539 dnaK Photobacterium profundum SS9 molecular chaperone DnaK YP_128920.1 772514 D 298386 CDS YP_128921.1 54307901 3124921 774522..775664 1 NC_006370.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ 775664 3124921 PBPRA0698 Photobacterium profundum SS9 molecular chaperone DnaJ YP_128921.1 774522 D 298386 CDS YP_128922.1 54307902 3123565 complement(775743..776123) 1 NC_006370.1 fimbrial assembly protein PilE 776123 3123565 PBPRA0699 Photobacterium profundum SS9 fimbrial assembly protein PilE YP_128922.1 775743 R 298386 CDS YP_128923.1 54307903 3124639 776216..776845 1 NC_006370.1 type IV pilin 776845 3124639 PBPRA0700 Photobacterium profundum SS9 type IV pilin YP_128923.1 776216 D 298386 CDS YP_128924.1 54307904 3122287 776802..777458 1 NC_006370.1 hypothetical protein 777458 3122287 PBPRA0701 Photobacterium profundum SS9 hypothetical protein YP_128924.1 776802 D 298386 CDS YP_128925.1 54307905 3123982 777458..778753 1 NC_006370.1 hypothetical protein 778753 3123982 PBPRA0702 Photobacterium profundum SS9 hypothetical protein YP_128925.1 777458 D 298386 CDS YP_128926.1 54307906 3123293 778779..779147 1 NC_006370.1 type IV pilin 779147 3123293 PBPRA0703 Photobacterium profundum SS9 type IV pilin YP_128926.1 778779 D 298386 CDS YP_128927.1 54307907 3124341 complement(786125..786688) 1 NC_006370.1 transposase 786688 3124341 PBPRA0712 Photobacterium profundum SS9 transposase YP_128927.1 786125 R 298386 CDS YP_128928.1 54307908 3124657 complement(786690..787160) 1 NC_006370.1 transposase and inactivatedderivatives 787160 3124657 PBPRA0713 Photobacterium profundum SS9 transposase and inactivatedderivatives YP_128928.1 786690 R 298386 CDS YP_128929.1 54307909 3123594 787608..788588 1 NC_006370.1 SorC family transcriptional regulator 788588 3123594 PBPRA0714 Photobacterium profundum SS9 SorC family transcriptional regulator YP_128929.1 787608 D 298386 CDS YP_128930.1 54307910 3124312 788715..789551 1 NC_006370.1 D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase 789551 mepA 3124312 mepA Photobacterium profundum SS9 penicillin-insensitive murein endopeptidase YP_128930.1 788715 D 298386 CDS YP_128931.1 54307911 3123628 complement(789602..789856) 1 NC_006370.1 ferredoxin 789856 3123628 PBPRA0716 Photobacterium profundum SS9 ferredoxin YP_128931.1 789602 R 298386 CDS YP_128932.1 54307912 3125502 complement(789861..791267) 1 NC_006370.1 protease 791267 3125502 PBPRA0717 Photobacterium profundum SS9 protease YP_128932.1 789861 R 298386 CDS YP_128933.2 161936325 3125237 complement(791491..792405) 1 NC_006370.1 Required for efficient pilin antigenic variation; recombination associated protein 792405 rdgC 3125237 rdgC Photobacterium profundum SS9 recombination associated protein YP_128933.2 791491 R 298386 CDS YP_128934.1 54307914 3122087 792542..793825 1 NC_006370.1 exonuclease SbcD 793825 3122087 PBPRA0719 Photobacterium profundum SS9 exonuclease SbcD YP_128934.1 792542 D 298386 CDS YP_128935.1 54307915 3122303 793825..797595 1 NC_006370.1 hypothetical protein 797595 3122303 PBPRA0720 Photobacterium profundum SS9 hypothetical protein YP_128935.1 793825 D 298386 CDS YP_128936.1 54307916 3125270 797762..798451 1 NC_006370.1 DNA-binding response regulator PhoB 798451 3125270 PBPRA0721 Photobacterium profundum SS9 DNA-binding response regulator PhoB YP_128936.1 797762 D 298386 CDS YP_128937.1 54307917 3124902 798638..799942 1 NC_006370.1 membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; phosphate regulon sensor protein 799942 phoR 3124902 phoR Photobacterium profundum SS9 phosphate regulon sensor protein YP_128937.1 798638 D 298386 CDS YP_128938.1 54307918 3123798 800036..800998 1 NC_006370.1 phosphate-binding protein 800998 3123798 PBPRA0723 Photobacterium profundum SS9 phosphate-binding protein YP_128938.1 800036 D 298386 CDS YP_128939.1 54307919 3125225 complement(801105..802292) 1 NC_006370.1 exopolyphosphatase 802292 3125225 PBPRA0724 Photobacterium profundum SS9 exopolyphosphatase YP_128939.1 801105 R 298386 CDS YP_128940.1 54307920 3124382 complement(802445..802612) 1 NC_006370.1 hypothetical protein 802612 3124382 PBPRA0725 Photobacterium profundum SS9 hypothetical protein YP_128940.1 802445 R 298386 CDS YP_128941.1 54307921 3123870 complement(802599..804701) 1 NC_006370.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 804701 3123870 PBPRA0726 Photobacterium profundum SS9 polyphosphate kinase YP_128941.1 802599 R 298386 CDS YP_128942.1 54307922 3125321 complement(804822..805334) 1 NC_006370.1 hypothetical protein 805334 3125321 PBPRA0727 Photobacterium profundum SS9 hypothetical protein YP_128942.1 804822 R 298386 CDS YP_128943.1 54307923 3125257 805706..807949 1 NC_006370.1 phosphate ABC transporter permease 807949 3125257 PBPRA0728 Photobacterium profundum SS9 phosphate ABC transporter permease YP_128943.1 805706 D 298386 CDS YP_128944.1 54307924 3123575 808049..809710 1 NC_006370.1 phosphate ABC transporter, permease protein 809710 3123575 PBPRA0729 Photobacterium profundum SS9 phosphate ABC transporter, permease protein YP_128944.1 808049 D 298386 CDS YP_128945.1 54307925 3123436 809737..810555 1 NC_006370.1 ABC-type phosphate transport system,ATPase component 810555 3123436 PBPRA0730 Photobacterium profundum SS9 ABC-type phosphate transport system,ATPase component YP_128945.1 809737 D 298386 CDS YP_128946.1 54307926 3123209 810567..811277 1 NC_006370.1 regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU 811277 3123209 PBPRA0731 Photobacterium profundum SS9 transcriptional regulator PhoU YP_128946.1 810567 D 298386 CDS YP_128947.1 54307927 3123576 complement(811582..812382) 1 NC_006370.1 hypothetical protein 812382 3123576 PBPRA0732 Photobacterium profundum SS9 hypothetical protein YP_128947.1 811582 R 298386 CDS YP_128948.1 54307928 3125120 812675..813481 1 NC_006370.1 hypothetical protein 813481 3125120 PBPRA0733 Photobacterium profundum SS9 hypothetical protein YP_128948.1 812675 D 298386 CDS YP_128949.1 54307929 3125083 complement(813549..814286) 1 NC_006370.1 copper homeostasis protein 814286 3125083 PBPRA0734 Photobacterium profundum SS9 copper homeostasis protein YP_128949.1 813549 R 298386 CDS YP_128950.1 54307930 3125405 complement(814563..815180) 1 NC_006370.1 Ahp/CTSA family anti-oxidant protein 815180 3125405 PBPRA0735 Photobacterium profundum SS9 Ahp/CTSA family anti-oxidant protein YP_128950.1 814563 R 298386 CDS YP_128951.1 54307931 3125266 815298..816194 1 NC_006370.1 LysR family transcriptional regulator 816194 3125266 PBPRA0736 Photobacterium profundum SS9 LysR family transcriptional regulator YP_128951.1 815298 D 298386 CDS YP_128952.1 54307932 3123546 816794..818407 1 NC_006370.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 818407 3123546 PBPRA0737 Photobacterium profundum SS9 malate synthase YP_128952.1 816794 D 298386 CDS YP_128953.1 54307933 3123092 818530..819834 1 NC_006370.1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase 819834 3123092 PBPRA0738 Photobacterium profundum SS9 isocitrate lyase YP_128953.1 818530 D 298386 CDS YP_128954.1 54307934 3123020 complement(819914..820501) 1 NC_006370.1 hypothetical protein 820501 3123020 PBPRA0739 Photobacterium profundum SS9 hypothetical protein YP_128954.1 819914 R 298386 CDS YP_128955.1 54307935 3125507 complement(820517..820972) 1 NC_006370.1 acetoin utilization protein AcuB 820972 3125507 PBPRA0740 Photobacterium profundum SS9 acetoin utilization protein AcuB YP_128955.1 820517 R 298386 CDS YP_128956.1 54307936 3125513 821286..822374 1 NC_006370.1 trypsin-like serine protease 822374 3125513 PBPRA0741 Photobacterium profundum SS9 trypsin-like serine protease YP_128956.1 821286 D 298386 CDS YP_128957.1 54307937 3125127 822468..823571 1 NC_006370.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase 823571 queA 3125127 queA Photobacterium profundum SS9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_128957.1 822468 D 298386 CDS YP_128958.1 54307938 3124971 823858..824985 1 NC_006370.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 824985 tgt 3124971 tgt Photobacterium profundum SS9 queuine tRNA-ribosyltransferase YP_128958.1 823858 D 298386 CDS YP_128959.1 54307939 3122998 825010..825345 1 NC_006370.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 825345 yajC 3122998 yajC Photobacterium profundum SS9 preprotein translocase subunit YajC YP_128959.1 825010 D 298386 CDS YP_128960.1 54307940 3124929 825371..827224 1 NC_006370.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 827224 secD 3124929 secD Photobacterium profundum SS9 preprotein translocase subunit SecD YP_128960.1 825371 D 298386 CDS YP_128961.1 54307941 3122887 827236..828183 1 NC_006370.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 828183 secF 3122887 secF Photobacterium profundum SS9 preprotein translocase subunit SecF YP_128961.1 827236 D 298386 CDS YP_128962.1 54307942 3122539 complement(828477..829277) 1 NC_006370.1 inositol monophosphate family protein 829277 3122539 PBPRA0747 Photobacterium profundum SS9 inositol monophosphate family protein YP_128962.1 828477 R 298386 CDS YP_128963.1 54307943 3122658 829487..830218 1 NC_006370.1 TrmH family RNA methyltransferase 830218 3122658 PBPRA0748 Photobacterium profundum SS9 TrmH family RNA methyltransferase YP_128963.1 829487 D 298386 CDS YP_128964.1 54307944 3122791 830331..830849 1 NC_006370.1 transcriptional regulator 830849 3122791 PBPRA0749 Photobacterium profundum SS9 transcriptional regulator YP_128964.1 830331 D 298386 CDS YP_128965.1 54307945 3122753 830881..832095 1 NC_006370.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 832095 3122753 PBPRA0750 Photobacterium profundum SS9 cysteine desulfurase YP_128965.1 830881 D 298386 CDS YP_128966.1 54307946 3124392 832142..832528 1 NC_006370.1 scaffold protein 832528 3124392 PBPRA0751 Photobacterium profundum SS9 scaffold protein YP_128966.1 832142 D 298386 CDS YP_128967.1 54307947 3123053 832547..832870 1 NC_006370.1 hesB family protein 832870 3123053 PBPRA0752 Photobacterium profundum SS9 hesB family protein YP_128967.1 832547 D 298386 CDS YP_128968.1 54307948 3124664 832956..833471 1 NC_006370.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 833471 hscB 3124664 hscB Photobacterium profundum SS9 co-chaperone HscB YP_128968.1 832956 D 298386 CDS YP_128969.1 54307949 3123751 833510..835363 1 NC_006370.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 835363 hscA 3123751 hscA Photobacterium profundum SS9 chaperone protein HscA YP_128969.1 833510 D 298386 CDS YP_128970.1 54307950 3124394 835366..835704 1 NC_006370.1 ferredoxin 835704 3124394 PBPRA0755 Photobacterium profundum SS9 ferredoxin YP_128970.1 835366 D 298386 CDS YP_128971.1 54307951 3123792 835804..836004 1 NC_006370.1 hypothetical protein 836004 3123792 PBPRA0756 Photobacterium profundum SS9 hypothetical protein YP_128971.1 835804 D 298386 CDS YP_128972.1 54307952 3124411 836331..837617 1 NC_006370.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase 837617 3124411 PBPRA0757 Photobacterium profundum SS9 aminopeptidase YP_128972.1 836331 D 298386 CDS YP_128973.1 54307953 3123374 837733..839010 1 NC_006370.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase 839010 3123374 PBPRA0758 Photobacterium profundum SS9 aminopeptidase YP_128973.1 837733 D 298386 CDS YP_128974.1 54307954 3123280 839155..839583 1 NC_006370.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 839583 ndk 3123280 ndk Photobacterium profundum SS9 nucleoside diphosphate kinase YP_128974.1 839155 D 298386 CDS YP_128975.1 54307955 3123477 839836..840957 1 NC_006370.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 840957 3123477 PBPRA0760 Photobacterium profundum SS9 ribosomal RNA large subunit methyltransferase N YP_128975.1 839836 D 298386 CDS YP_128976.1 54307956 3123464 841023..841751 1 NC_006370.1 fimbrial biogenesis and twitching motility protein 841751 3123464 PBPRA0761 Photobacterium profundum SS9 fimbrial biogenesis and twitching motility protein YP_128976.1 841023 D 298386 CDS YP_128977.1 54307957 3123336 841798..842733 1 NC_006370.1 DNA-binding protein 842733 3123336 PBPRA0762 Photobacterium profundum SS9 DNA-binding protein YP_128977.1 841798 D 298386 CDS YP_128978.1 54307958 3123695 842746..843867 1 NC_006370.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 843867 ispG 3123695 ispG Photobacterium profundum SS9 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_128978.1 842746 D 298386 CDS YP_128979.1 54307959 3123188 843963..845231 1 NC_006370.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 845231 hisS 3123188 hisS Photobacterium profundum SS9 histidyl-tRNA synthetase YP_128979.1 843963 D 298386 CDS YP_128980.1 54307960 3123292 845245..845856 1 NC_006370.1 hypothetical protein 845856 3123292 PBPRA0765 Photobacterium profundum SS9 hypothetical protein YP_128980.1 845245 D 298386 CDS YP_128981.1 54307961 3123909 845868..847025 1 NC_006370.1 with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 847025 3123909 PBPRA0766 Photobacterium profundum SS9 outer membrane protein assembly complex subunit YfgL YP_128981.1 845868 D 298386 CDS YP_128982.1 54307962 3123771 847204..848685 1 NC_006370.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 848685 engA 3123771 engA Photobacterium profundum SS9 GTP-binding protein EngA YP_128982.1 847204 D 298386 CDS YP_128983.1 54307963 3123614 848955..849830 1 NC_006370.1 metal-dependent hydrolase 849830 3123614 PBPRA0768 Photobacterium profundum SS9 metal-dependent hydrolase YP_128983.1 848955 D 298386 CDS YP_128984.1 54307964 3123610 complement(849831..850082) 1 NC_006370.1 hypothetical protein 850082 3123610 PBPRA0769 Photobacterium profundum SS9 hypothetical protein YP_128984.1 849831 R 298386 CDS YP_128985.1 54307965 3124217 complement(850155..850403) 1 NC_006370.1 hypothetical protein 850403 3124217 PBPRA0770 Photobacterium profundum SS9 hypothetical protein YP_128985.1 850155 R 298386 CDS YP_128986.1 54307966 3123219 850601..851779 1 NC_006370.1 methyl-accepting chemotaxis protein 851779 3123219 PBPRA0771 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_128986.1 850601 D 298386 CDS YP_128987.1 54307967 3124120 851795..852163 1 NC_006370.1 chemotaxis protein CheY 852163 3124120 PBPRA0772 Photobacterium profundum SS9 chemotaxis protein CheY YP_128987.1 851795 D 298386 CDS YP_128988.1 54307968 3124451 852178..852489 1 NC_006370.1 hypothetical protein 852489 3124451 PBPRA0773 Photobacterium profundum SS9 hypothetical protein YP_128988.1 852178 D 298386 CDS YP_128989.1 54307969 3122431 852553..854793 1 NC_006370.1 chemotaxis histidine protein kinase CheA 854793 3122431 PBPRA0774 Photobacterium profundum SS9 chemotaxis histidine protein kinase CheA YP_128989.1 852553 D 298386 CDS YP_128990.1 54307970 3123168 complement(854840..855337) 1 NC_006370.1 hypothetical protein 855337 3123168 PBPRA0775 Photobacterium profundum SS9 hypothetical protein YP_128990.1 854840 R 298386 CDS YP_128991.1 54307971 3124336 855531..858326 1 NC_006370.1 hypothetical protein 858326 3124336 PBPRA0776 Photobacterium profundum SS9 hypothetical protein YP_128991.1 855531 D 298386 CDS YP_128992.1 54307972 3124275 858444..859355 1 NC_006370.1 chemotaxis protein methyltransferase 859355 3124275 PBPRA0777 Photobacterium profundum SS9 chemotaxis protein methyltransferase YP_128992.1 858444 D 298386 CDS YP_128993.2 161936324 3122515 859426..860502 1 NC_006370.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 860502 3122515 PBPRA0778 Photobacterium profundum SS9 chemotaxis-specific methylesterase YP_128993.2 859426 D 298386 CDS YP_128994.1 54307974 3123283 complement(861331..862677) 1 NC_006370.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 862677 xseA 3123283 xseA Photobacterium profundum SS9 exodeoxyribonuclease VII large subunit YP_128994.1 861331 R 298386 CDS YP_128995.1 54307975 3122478 862936..864399 1 NC_006370.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 864399 3122478 PBPRA0780 Photobacterium profundum SS9 inosine 5'-monophosphate dehydrogenase YP_128995.1 862936 D 298386 CDS YP_128996.1 54307976 3123698 864532..866115 1 NC_006370.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 866115 guaA 3123698 guaA Photobacterium profundum SS9 GMP synthase YP_128996.1 864532 D 298386 CDS YP_128997.1 54307977 3123429 866566..868125 1 NC_006370.1 p-aminobenzoyl-glutamatetransporter 868125 3123429 PBPRA0782 Photobacterium profundum SS9 p-aminobenzoyl-glutamatetransporter YP_128997.1 866566 D 298386 CDS YP_128998.1 54307978 3124877 complement(868235..869077) 1 NC_006370.1 esterase 869077 3124877 PBPRA0783 Photobacterium profundum SS9 esterase YP_128998.1 868235 R 298386 CDS YP_128999.1 54307979 3125216 complement(869183..870313) 1 NC_006370.1 alcohol dehydrogenase class III 870313 3125216 PBPRA0784 Photobacterium profundum SS9 alcohol dehydrogenase class III YP_128999.1 869183 R 298386 CDS YP_129000.1 54307980 3123129 complement(870306..870548) 1 NC_006370.1 hypothetical protein 870548 3123129 PBPRA0785 Photobacterium profundum SS9 hypothetical protein YP_129000.1 870306 R 298386 CDS YP_129001.1 54307981 3123784 870681..871196 1 NC_006370.1 cytosine/adenosine deaminase 871196 3123784 PBPRA0786 Photobacterium profundum SS9 cytosine/adenosine deaminase YP_129001.1 870681 D 298386 CDS YP_129002.1 54307982 3122277 complement(871693..873237) 1 NC_006370.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; transglycosylase 873237 3122277 PBPRA0787 Photobacterium profundum SS9 transglycosylase YP_129002.1 871693 R 298386 CDS YP_129003.1 54307983 3122744 873584..877552 1 NC_006370.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 877552 3122744 PBPRA0788 Photobacterium profundum SS9 phosphoribosylformylglycinamidine synthase YP_129003.1 873584 D 298386 CDS YP_129004.1 54307984 3122856 complement(877957..878265) 1 NC_006370.1 transposase 878265 3122856 PBPRA0789 Photobacterium profundum SS9 transposase YP_129004.1 877957 R 298386 CDS YP_129005.1 54307985 3122355 complement(878336..878770) 1 NC_006370.1 transposase 878770 3122355 PBPRA0790 Photobacterium profundum SS9 transposase YP_129005.1 878336 R 298386 CDS YP_129006.1 54307986 3122221 complement(878835..879344) 1 NC_006370.1 hypothetical protein 879344 3122221 PBPRA0791 Photobacterium profundum SS9 hypothetical protein YP_129006.1 878835 R 298386 CDS YP_129007.1 54307987 3122069 879761..880174 1 NC_006370.1 hypothetical protein 880174 3122069 PBPRA0792 Photobacterium profundum SS9 hypothetical protein YP_129007.1 879761 D 298386 CDS YP_129008.1 54307988 3123485 880544..880882 1 NC_006370.1 nitrogen regulatory protein P-II 880882 3123485 PBPRA0793 Photobacterium profundum SS9 nitrogen regulatory protein P-II YP_129008.1 880544 D 298386 CDS YP_129009.1 54307989 3123731 complement(880980..881597) 1 NC_006370.1 hypothetical protein 881597 3123731 PBPRA0794 Photobacterium profundum SS9 hypothetical protein YP_129009.1 880980 R 298386 CDS YP_129010.1 54307990 3123727 881996..883246 1 NC_006370.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 883246 glyA 3123727 glyA Photobacterium profundum SS9 serine hydroxymethyltransferase YP_129010.1 881996 D 298386 CDS YP_129011.1 54307991 3124102 883456..883905 1 NC_006370.1 transcriptional regulator NrdR 883905 nrdR 3124102 nrdR Photobacterium profundum SS9 transcriptional regulator NrdR YP_129011.1 883456 D 298386 CDS YP_129012.1 54307992 3123642 883985..885100 1 NC_006370.1 pyrimidine deaminase/pyrimidine reductase 885100 3123642 PBPRA0797 Photobacterium profundum SS9 pyrimidine deaminase/pyrimidine reductase YP_129012.1 883985 D 298386 CDS YP_129013.1 54307993 3122987 885129..885785 1 NC_006370.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 885785 3122987 PBPRA0798 Photobacterium profundum SS9 riboflavin synthase subunit alpha YP_129013.1 885129 D 298386 CDS YP_129014.1 54307994 3123687 885807..886910 1 NC_006370.1 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II 886910 3123687 PBPRA0799 Photobacterium profundum SS9 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II YP_129014.1 885807 D 298386 CDS YP_129015.1 54307995 3124886 887105..887575 1 NC_006370.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 887575 ribH 3124886 ribH Photobacterium profundum SS9 6,7-dimethyl-8-ribityllumazine synthase YP_129015.1 887105 D 298386 CDS YP_129016.1 54307996 3122016 887587..888042 1 NC_006370.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 888042 nusB 3122016 nusB Photobacterium profundum SS9 transcription antitermination protein NusB YP_129016.1 887587 D 298386 CDS YP_129017.1 54307997 3122656 888137..889111 1 NC_006370.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 889111 3122656 PBPRA0802 Photobacterium profundum SS9 thiamine monophosphate kinase YP_129017.1 888137 D 298386 CDS YP_129018.1 54307998 3122533 889115..889600 1 NC_006370.1 hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate; phosphatidylglycerophosphatase A 889600 3122533 PBPRA0803 Photobacterium profundum SS9 phosphatidylglycerophosphatase A YP_129018.1 889115 D 298386 CDS YP_129019.1 54307999 3123132 889765..891840 1 NC_006370.1 hypothetical protein 891840 3123132 PBPRA0804 Photobacterium profundum SS9 hypothetical protein YP_129019.1 889765 D 298386 CDS YP_129020.1 54308000 3125521 complement(891999..893861) 1 NC_006370.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 893861 3125521 PBPRA0805 Photobacterium profundum SS9 1-deoxy-D-xylulose-5-phosphate synthase YP_129020.1 891999 R 298386 CDS YP_129021.1 54308001 3122121 complement(893886..894788) 1 NC_006370.1 geranyltranstransferase 894788 3122121 PBPRA0806 Photobacterium profundum SS9 geranyltranstransferase YP_129021.1 893886 R 298386 CDS YP_129022.1 54308002 3125145 complement(894781..895023) 1 NC_006370.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 895023 3125145 PBPRA0807 Photobacterium profundum SS9 exodeoxyribonuclease VII small subunit YP_129022.1 894781 R 298386 CDS YP_129023.1 54308003 3123289 895240..896001 1 NC_006370.1 Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.; flagellar motor protein PomA 896001 3123289 PBPRA0808 Photobacterium profundum SS9 flagellar motor protein PomA YP_129023.1 895240 D 298386 CDS YP_129024.1 54308004 3122869 896010..896942 1 NC_006370.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar motor protein MotB 896942 motB 3122869 motB Photobacterium profundum SS9 flagellar motor protein MotB YP_129024.1 896010 D 298386 CDS YP_129025.1 54308005 3124228 897147..898595 1 NC_006370.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 898595 3124228 PBPRA0810 Photobacterium profundum SS9 thiamine biosynthesis protein ThiI YP_129025.1 897147 D 298386 CDS YP_129026.1 54308006 3122958 complement(898675..899295) 1 NC_006370.1 4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme 899295 3122958 PBPRA0811 Photobacterium profundum SS9 4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme YP_129026.1 898675 R 298386 CDS YP_129027.1 54308007 3123942 complement(899285..900250) 1 NC_006370.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 900250 3123942 PBPRA0812 Photobacterium profundum SS9 2-dehydropantoate 2-reductase YP_129027.1 899285 R 298386 CDS YP_129028.1 54308008 3122152 complement(900697..901515) 1 NC_006370.1 outer membrane protein ompK precursor 901515 3122152 PBPRA0813 Photobacterium profundum SS9 outer membrane protein ompK precursor YP_129028.1 900697 R 298386 CDS YP_129029.1 54308009 3124368 complement(901890..902765) 1 NC_006370.1 outer membrane protein OmpK 902765 3124368 PBPRA0814 Photobacterium profundum SS9 outer membrane protein OmpK YP_129029.1 901890 R 298386 CDS YP_129030.1 54308010 3122905 complement(903125..904513) 1 NC_006370.1 ampG protein 904513 3122905 PBPRA0815 Photobacterium profundum SS9 ampG protein YP_129030.1 903125 R 298386 CDS YP_129031.1 54308011 3122734 complement(904752..905114) 1 NC_006370.1 hypothetical protein 905114 3122734 PBPRA0816 Photobacterium profundum SS9 hypothetical protein YP_129031.1 904752 R 298386 CDS YP_129032.1 54308012 3122614 complement(905161..905712) 1 NC_006370.1 peptidyl-prolyl cis-trans isomerase A 905712 3122614 PBPRA0817 Photobacterium profundum SS9 peptidyl-prolyl cis-trans isomerase A YP_129032.1 905161 R 298386 CDS YP_129033.1 54308013 3124074 complement(905712..906281) 1 NC_006370.1 lipoprotein 906281 3124074 PBPRA0818 Photobacterium profundum SS9 lipoprotein YP_129033.1 905712 R 298386 CDS YP_129034.1 54308014 3122084 complement(906373..907497) 1 NC_006370.1 methyltransferase 907497 3122084 PBPRA0819 Photobacterium profundum SS9 methyltransferase YP_129034.1 906373 R 298386 CDS YP_129035.1 54308015 3123482 907621..907929 1 NC_006370.1 cell division protein BolA 907929 3123482 PBPRA0820 Photobacterium profundum SS9 cell division protein BolA YP_129035.1 907621 D 298386 CDS YP_129036.1 54308016 3123639 908222..909307 1 NC_006370.1 hypothetical protein 909307 3123639 PBPRA0821 Photobacterium profundum SS9 hypothetical protein YP_129036.1 908222 D 298386 CDS YP_129037.1 54308017 3124069 complement(909390..909653) 1 NC_006370.1 hypothetical protein 909653 3124069 PBPRA0822 Photobacterium profundum SS9 hypothetical protein YP_129037.1 909390 R 298386 CDS YP_129038.1 54308018 3123891 909713..911059 1 NC_006370.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 911059 3123891 PBPRA0823 Photobacterium profundum SS9 Na(+)-translocating NADH-quinone reductase subunit A YP_129038.1 909713 D 298386 CDS YP_129039.1 54308019 3123339 911063..912307 1 NC_006370.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 912307 3123339 PBPRA0824 Photobacterium profundum SS9 Na(+)-translocating NADH-quinone reductase subunit B YP_129039.1 911063 D 298386 CDS YP_129040.1 54308020 3123684 912297..913091 1 NC_006370.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 913091 3123684 PBPRA0825 Photobacterium profundum SS9 Na(+)-translocating NADH-quinone reductase subunit C YP_129040.1 912297 D 298386 CDS YP_129041.1 54308021 3122399 913084..913716 1 NC_006370.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 913716 3122399 PBPRA0826 Photobacterium profundum SS9 Na(+)-translocating NADH-quinone reductase subunit D YP_129041.1 913084 D 298386 CDS YP_129042.1 54308022 3122779 913724..914320 1 NC_006370.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 914320 3122779 PBPRA0827 Photobacterium profundum SS9 Na(+)-translocating NADH-quinone reductase subunit E YP_129042.1 913724 D 298386 CDS YP_129043.1 54308023 3122624 914344..915567 1 NC_006370.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 915567 3122624 PBPRA0828 Photobacterium profundum SS9 Na(+)-translocating NADH-quinone reductase subunit F YP_129043.1 914344 D 298386 CDS YP_129044.1 54308024 3122776 915760..916782 1 NC_006370.1 thiamin biosynthesis lipoprotein ApbE 916782 3122776 PBPRA0829 Photobacterium profundum SS9 thiamin biosynthesis lipoprotein ApbE YP_129044.1 915760 D 298386 CDS YP_129045.1 54308025 3124230 916792..917013 1 NC_006370.1 hypothetical protein 917013 3124230 PBPRA0830 Photobacterium profundum SS9 hypothetical protein YP_129045.1 916792 D 298386 CDS YP_129046.1 54308026 3123328 complement(917163..918395) 1 NC_006370.1 transcriptional regulator 918395 3123328 PBPRA0831 Photobacterium profundum SS9 transcriptional regulator YP_129046.1 917163 R 298386 CDS YP_129047.1 54308027 3125241 918650..919726 1 NC_006370.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 919726 3125241 PBPRA0832 Photobacterium profundum SS9 DNA polymerase IV YP_129047.1 918650 D 298386 CDS YP_129048.1 54308028 3123126 complement(919892..921352) 1 NC_006370.1 aminoacyl-histidine dipeptidase 921352 3123126 PBPRA0833 Photobacterium profundum SS9 aminoacyl-histidine dipeptidase YP_129048.1 919892 R 298386 CDS YP_129049.1 54308029 3124153 complement(922640..923590) 1 NC_006370.1 transposase 923590 3124153 PBPRA0834 Photobacterium profundum SS9 transposase YP_129049.1 922640 R 298386 CDS YP_129050.1 54308030 3122332 923797..925236 1 NC_006370.1 xanthine/uracil permease family protein 925236 3122332 PBPRA0835 Photobacterium profundum SS9 xanthine/uracil permease family protein YP_129050.1 923797 D 298386 CDS YP_129051.1 54308031 3124106 925291..925749 1 NC_006370.1 catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 925749 3124106 PBPRA0836 Photobacterium profundum SS9 xanthine-guanine phosphoribosyltransferase YP_129051.1 925291 D 298386 CDS YP_129052.1 54308032 3124739 926000..927259 1 NC_006370.1 forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation; fermentation/respiration switch protein 927259 frsA 3124739 frsA Photobacterium profundum SS9 fermentation/respiration switch protein YP_129052.1 926000 D 298386 CDS YP_129053.1 54308033 3125089 927417..927818 1 NC_006370.1 involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS; DNA-binding transcriptional regulator Crl 927818 3125089 PBPRA0838 Photobacterium profundum SS9 DNA-binding transcriptional regulator Crl YP_129053.1 927417 D 298386 CDS YP_129054.1 54308034 3123815 928117..929253 1 NC_006370.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 929253 3123815 PBPRA0839 Photobacterium profundum SS9 gamma-glutamyl kinase YP_129054.1 928117 D 298386 CDS YP_129055.1 54308035 3124046 929351..930607 1 NC_006370.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 930607 proA 3124046 proA Photobacterium profundum SS9 gamma-glutamyl phosphate reductase YP_129055.1 929351 D 298386 CDS YP_129056.1 54308036 3123829 930849..932447 1 NC_006370.1 hypothetical protein 932447 3123829 PBPRA0841 Photobacterium profundum SS9 hypothetical protein YP_129056.1 930849 D 298386 CDS YP_129057.1 54308037 3122173 932578..933468 1 NC_006370.1 hypothetical protein 933468 3122173 PBPRA0842 Photobacterium profundum SS9 hypothetical protein YP_129057.1 932578 D 298386 CDS YP_129058.1 54308038 3123106 complement(933740..934501) 1 NC_006370.1 D,D-carboxypeptidase-related protein 934501 3123106 PBPRA0843 Photobacterium profundum SS9 D,D-carboxypeptidase-related protein YP_129058.1 933740 R 298386 CDS YP_129059.1 54308039 3123341 complement(934429..935562) 1 NC_006370.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 935562 3123341 PBPRA0844 Photobacterium profundum SS9 succinyl-diaminopimelate desuccinylase YP_129059.1 934429 R 298386 CDS YP_129060.1 54308040 3124841 complement(935577..935939) 1 NC_006370.1 arsenate reductase 935939 3124841 PBPRA0845 Photobacterium profundum SS9 arsenate reductase YP_129060.1 935577 R 298386 CDS YP_129061.1 54308041 3123674 complement(936038..936499) 1 NC_006370.1 hypothetical protein 936499 3123674 PBPRA0846 Photobacterium profundum SS9 hypothetical protein YP_129061.1 936038 R 298386 CDS YP_129062.1 54308042 3122673 936880..937173 1 NC_006370.1 hypothetical protein 937173 3122673 PBPRA0847 Photobacterium profundum SS9 hypothetical protein YP_129062.1 936880 D 298386 CDS YP_129063.1 54308043 3123954 complement(937231..937563) 1 NC_006370.1 outer membrane lipoprotein 937563 3123954 PBPRA0848 Photobacterium profundum SS9 outer membrane lipoprotein YP_129063.1 937231 R 298386 CDS YP_129064.1 54308044 3122433 complement(937563..938189) 1 NC_006370.1 nitrate/nitrite response regulator protein 938189 3122433 PBPRA0849 Photobacterium profundum SS9 nitrate/nitrite response regulator protein YP_129064.1 937563 R 298386 CDS YP_129065.1 54308045 3122092 complement(938199..939896) 1 NC_006370.1 nitrate/nitrite sensor protein NarQ 939896 3122092 PBPRA0850 Photobacterium profundum SS9 nitrate/nitrite sensor protein NarQ YP_129065.1 938199 R 298386 CDS YP_129066.1 54308046 3124079 940213..940692 1 NC_006370.1 (Fe-S)-binding protein 940692 3124079 PBPRA0851 Photobacterium profundum SS9 (Fe-S)-binding protein YP_129066.1 940213 D 298386 CDS YP_129067.1 54308047 3123471 940707..940979 1 NC_006370.1 NapD protein 940979 3123471 PBPRA0852 Photobacterium profundum SS9 NapD protein YP_129067.1 940707 D 298386 CDS YP_129068.1 54308048 3123080 940976..943462 1 NC_006370.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 943462 3123080 PBPRA0853 Photobacterium profundum SS9 nitrate reductase catalytic subunit YP_129068.1 940976 D 298386 CDS YP_129069.1 54308049 3123270 943577..944062 1 NC_006370.1 periplasmic nitrate reductase,cytochrome c-type protein 944062 3123270 PBPRA0854 Photobacterium profundum SS9 periplasmic nitrate reductase,cytochrome c-type protein YP_129069.1 943577 D 298386 CDS YP_129070.1 54308050 3122538 944123..944668 1 NC_006370.1 periplasmic nitrate reductase, cytochrome c-type protein 944668 3122538 PBPRA0855 Photobacterium profundum SS9 periplasmic nitrate reductase, cytochrome c-type protein YP_129070.1 944123 D 298386 CDS YP_129071.1 54308051 3122993 complement(945191..945640) 1 NC_006370.1 hypothetical protein 945640 3122993 PBPRA0856 Photobacterium profundum SS9 hypothetical protein YP_129071.1 945191 R 298386 CDS YP_129072.1 54308052 3124268 complement(945667..946014) 1 NC_006370.1 hypothetical protein 946014 3124268 PBPRA0857 Photobacterium profundum SS9 hypothetical protein YP_129072.1 945667 R 298386 CDS YP_129073.1 54308053 3124311 946471..946932 1 NC_006370.1 hypothetical protein 946932 3124311 PBPRA0858 Photobacterium profundum SS9 hypothetical protein YP_129073.1 946471 D 298386 CDS YP_129074.1 54308054 3122621 946938..947345 1 NC_006370.1 hypothetical protein 947345 3122621 PBPRA0859 Photobacterium profundum SS9 hypothetical protein YP_129074.1 946938 D 298386 CDS YP_129075.1 54308055 3124853 947546..948442 1 NC_006370.1 TyrA protein 948442 3124853 PBPRA0860 Photobacterium profundum SS9 TyrA protein YP_129075.1 947546 D 298386 CDS YP_129076.1 54308056 3122672 complement(948601..949110) 1 NC_006370.1 functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter subunit 949110 3122672 PBPRA0861 Photobacterium profundum SS9 PTS system glucose-specific transporter subunit YP_129076.1 948601 R 298386 CDS YP_129077.1 54308057 3122850 complement(949151..950878) 1 NC_006370.1 Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; phosphoenolpyruvate-protein phosphotransferase 950878 3122850 PBPRA0862 Photobacterium profundum SS9 phosphoenolpyruvate-protein phosphotransferase YP_129077.1 949151 R 298386 CDS YP_129078.1 54308058 3123043 complement(950931..951188) 1 NC_006370.1 phosphocarrier protein HPr 951188 3123043 PBPRA0863 Photobacterium profundum SS9 phosphocarrier protein HPr YP_129078.1 950931 R 298386 CDS YP_129079.1 54308059 3122986 complement(951508..952476) 1 NC_006370.1 cysteine synthase A 952476 3122986 PBPRA0864 Photobacterium profundum SS9 cysteine synthase A YP_129079.1 951508 R 298386 CDS YP_129080.1 54308060 3124485 complement(952739..953500) 1 NC_006370.1 role in sulfur assimilation; sulfate transport protein CysZ 953500 3124485 PBPRA0865 Photobacterium profundum SS9 sulfate transport protein CysZ YP_129080.1 952739 R 298386 CDS YP_129081.1 54308061 3125522 953849..954907 1 NC_006370.1 cell division protein ZipA 954907 3125522 PBPRA0866 Photobacterium profundum SS9 cell division protein ZipA YP_129081.1 953849 D 298386 CDS YP_129082.1 54308062 3122505 955019..957049 1 NC_006370.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 957049 ligA 3122505 ligA Photobacterium profundum SS9 NAD-dependent DNA ligase LigA YP_129082.1 955019 D 298386 CDS YP_129083.1 54308063 3124110 957471..958985 1 NC_006370.1 hypothetical protein 958985 3124110 PBPRA0868 Photobacterium profundum SS9 hypothetical protein YP_129083.1 957471 D 298386 CDS YP_129084.1 54308064 3125071 complement(959439..960473) 1 NC_006370.1 hypothetical protein 960473 3125071 PBPRA0869 Photobacterium profundum SS9 hypothetical protein YP_129084.1 959439 R 298386 CDS YP_129085.1 54308065 3122548 960497..960760 1 NC_006370.1 hypothetical protein 960760 3122548 PBPRA0870 Photobacterium profundum SS9 hypothetical protein YP_129085.1 960497 D 298386 CDS YP_129086.1 54308066 3122027 961012..962004 1 NC_006370.1 hypothetical protein 962004 3122027 PBPRA0871 Photobacterium profundum SS9 hypothetical protein YP_129086.1 961012 D 298386 CDS YP_129087.1 54308067 3122082 962809..964200 1 NC_006370.1 hypothetical protein 964200 3122082 PBPRA0872 Photobacterium profundum SS9 hypothetical protein YP_129087.1 962809 D 298386 CDS YP_129088.1 54308068 3122833 964776..965027 1 NC_006370.1 hypothetical protein 965027 3122833 PBPRA0873 Photobacterium profundum SS9 hypothetical protein YP_129088.1 964776 D 298386 CDS YP_129089.1 54308069 3123878 965162..966586 1 NC_006370.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 966586 gltX 3123878 gltX Photobacterium profundum SS9 glutamyl-tRNA synthetase YP_129089.1 965162 D 298386 CDS YP_129090.1 54308070 3124154 967097..968239 1 NC_006370.1 hypothetical protein 968239 3124154 PBPRA0876 Photobacterium profundum SS9 hypothetical protein YP_129090.1 967097 D 298386 CDS YP_129091.1 54308071 3123793 968594..969934 1 NC_006370.1 integrase 969934 3123793 PBPRA0877 Photobacterium profundum SS9 integrase YP_129091.1 968594 D 298386 CDS YP_129092.1 54308072 3125300 970763..971149 1 NC_006370.1 hypothetical protein 971149 3125300 PBPRA0878 Photobacterium profundum SS9 hypothetical protein YP_129092.1 970763 D 298386 CDS YP_129093.1 54308073 3124479 971158..971445 1 NC_006370.1 hypothetical protein 971445 3124479 PBPRA0879 Photobacterium profundum SS9 hypothetical protein YP_129093.1 971158 D 298386 CDS YP_129094.1 54308074 3123231 971454..972146 1 NC_006370.1 hypothetical protein 972146 3123231 PBPRA0880 Photobacterium profundum SS9 hypothetical protein YP_129094.1 971454 D 298386 CDS YP_129095.1 54308075 3123298 973089..973436 1 NC_006370.1 transposase 973436 3123298 PBPRA0881 Photobacterium profundum SS9 transposase YP_129095.1 973089 D 298386 CDS YP_129096.1 54308076 3124364 973507..975888 1 NC_006370.1 DNA methylase HsdM 975888 3124364 PBPRA0882 Photobacterium profundum SS9 DNA methylase HsdM YP_129096.1 973507 D 298386 CDS YP_129097.1 54308077 3125505 975891..977204 1 NC_006370.1 type I restriction-modification system specificity determinant 977204 3125505 PBPRA0883 Photobacterium profundum SS9 type I restriction-modification system specificity determinant YP_129097.1 975891 D 298386 CDS YP_129098.1 54308078 3125034 977210..978679 1 NC_006370.1 hypothetical protein 978679 3125034 PBPRA0884 Photobacterium profundum SS9 hypothetical protein YP_129098.1 977210 D 298386 CDS YP_129099.1 54308079 3121942 978676..980715 1 NC_006370.1 hypothetical protein 980715 3121942 PBPRA0885 Photobacterium profundum SS9 hypothetical protein YP_129099.1 978676 D 298386 CDS YP_129100.1 54308080 3122179 980703..983753 1 NC_006370.1 type I restriction enzyme HsdR 983753 3122179 PBPRA0886 Photobacterium profundum SS9 type I restriction enzyme HsdR YP_129100.1 980703 D 298386 CDS YP_129101.1 54308081 3122809 complement(984260..984640) 1 NC_006370.1 hypothetical protein 984640 3122809 PBPRA0887 Photobacterium profundum SS9 hypothetical protein YP_129101.1 984260 R 298386 CDS YP_129102.1 54308082 3122144 complement(985300..985878) 1 NC_006370.1 resolvase 985878 3122144 PBPRA0888 Photobacterium profundum SS9 resolvase YP_129102.1 985300 R 298386 CDS YP_129103.1 54308083 3122117 complement(986509..987153) 1 NC_006370.1 hypothetical protein 987153 3122117 PBPRA0889 Photobacterium profundum SS9 hypothetical protein YP_129103.1 986509 R 298386 CDS YP_129104.1 54308084 3123111 complement(987397..987861) 1 NC_006370.1 hypothetical protein 987861 3123111 PBPRA0890 Photobacterium profundum SS9 hypothetical protein YP_129104.1 987397 R 298386 CDS YP_129105.1 54308085 3123516 989174..990355 1 NC_006370.1 hypothetical protein 990355 3123516 PBPRA0891 Photobacterium profundum SS9 hypothetical protein YP_129105.1 989174 D 298386 CDS YP_129106.1 54308086 3122198 complement(991218..992354) 1 NC_006370.1 hypothetical protein 992354 3122198 PBPRA0893 Photobacterium profundum SS9 hypothetical protein YP_129106.1 991218 R 298386 CDS YP_129107.1 54308087 3125392 992589..993224 1 NC_006370.1 hypothetical protein 993224 3125392 PBPRA0894 Photobacterium profundum SS9 hypothetical protein YP_129107.1 992589 D 298386 CDS YP_129108.1 54308088 3125037 993233..993661 1 NC_006370.1 hypothetical protein 993661 3125037 PBPRA0895 Photobacterium profundum SS9 hypothetical protein YP_129108.1 993233 D 298386 CDS YP_129109.1 54308089 3123360 complement(993677..994105) 1 NC_006370.1 chaperone FlgN 994105 3123360 PBPRA0896 Photobacterium profundum SS9 chaperone FlgN YP_129109.1 993677 R 298386 CDS YP_129110.1 54308090 3124061 complement(994152..994466) 1 NC_006370.1 negative regulator of flagellin synthesis FlgM 994466 3124061 PBPRA0897 Photobacterium profundum SS9 negative regulator of flagellin synthesis FlgM YP_129110.1 994152 R 298386 CDS YP_129111.1 54308091 3122352 complement(994628..995335) 1 NC_006370.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 995335 flgA 3122352 flgA Photobacterium profundum SS9 flagellar basal body P-ring biosynthesis protein FlgA YP_129111.1 994628 R 298386 CDS YP_129112.1 54308092 3122216 995465..996391 1 NC_006370.1 chemotaxis CheV 996391 3122216 PBPRA0899 Photobacterium profundum SS9 chemotaxis CheV YP_129112.1 995465 D 298386 CDS YP_129113.1 54308093 3124756 996431..997261 1 NC_006370.1 chemotaxis protein methyltransferase CheR 997261 3124756 PBPRA0900 Photobacterium profundum SS9 chemotaxis protein methyltransferase CheR YP_129113.1 996431 D 298386 CDS YP_129114.1 54308094 3125423 997400..997795 1 NC_006370.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal-body rod protein FlgB 997795 flgB 3125423 flgB Photobacterium profundum SS9 flagellar basal-body rod protein FlgB YP_129114.1 997400 D 298386 CDS YP_129115.1 54308095 3122495 997799..998215 1 NC_006370.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 998215 flgC 3122495 flgC Photobacterium profundum SS9 flagellar basal body rod protein FlgC YP_129115.1 997799 D 298386 CDS YP_129116.1 54308096 3125476 998233..998949 1 NC_006370.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 998949 flgD 3125476 flgD Photobacterium profundum SS9 flagellar basal body rod modification protein YP_129116.1 998233 D 298386 CDS YP_129117.1 54308097 3122250 999019..1000326 1 NC_006370.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1000326 flgE 3122250 flgE Photobacterium profundum SS9 flagellar hook protein FlgE YP_129117.1 999019 D 298386 CDS YP_129118.1 54308098 3125113 1000531..1001280 1 NC_006370.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1001280 flgF 3125113 flgF Photobacterium profundum SS9 flagellar basal body rod protein FlgF YP_129118.1 1000531 D 298386 CDS YP_129119.1 54308099 3124894 1001301..1002089 1 NC_006370.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1002089 flgG 3124894 flgG Photobacterium profundum SS9 flagellar basal body rod protein FlgG YP_129119.1 1001301 D 298386 CDS YP_129120.1 54308100 3122719 1002107..1002877 1 NC_006370.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 1002877 flgH 3122719 flgH Photobacterium profundum SS9 flagellar basal body L-ring protein YP_129120.1 1002107 D 298386 CDS YP_129121.1 54308101 3123665 1002944..1004035 1 NC_006370.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring biosynthesis protein FlgA 1004035 flgI 3123665 flgI Photobacterium profundum SS9 flagellar basal body P-ring biosynthesis protein FlgA YP_129121.1 1002944 D 298386 CDS YP_129122.1 54308102 3123272 1004121..1005074 1 NC_006370.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1005074 flgJ 3123272 flgJ Photobacterium profundum SS9 flagellar rod assembly protein/muramidase FlgJ YP_129122.1 1004121 D 298386 CDS YP_129123.1 54308103 3123006 1005457..1007337 1 NC_006370.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 1007337 flgK 3123006 flgK Photobacterium profundum SS9 flagellar hook-associated protein FlgK YP_129123.1 1005457 D 298386 CDS YP_129124.1 54308104 3125465 1007350..1008540 1 NC_006370.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.; flagellar hook-associated protein FlgL 1008540 flgL 3125465 flgL Photobacterium profundum SS9 flagellar hook-associated protein FlgL YP_129124.1 1007350 D 298386 CDS YP_129125.1 54308105 3124222 1008775..1009923 1 NC_006370.1 structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus; flagellin 1009923 3124222 PBPRA0912 Photobacterium profundum SS9 flagellin YP_129125.1 1008775 D 298386 CDS YP_129126.1 54308106 3124132 1010212..1011393 1 NC_006370.1 structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus; flagellin 1011393 3124132 PBPRA0913 Photobacterium profundum SS9 flagellin YP_129126.1 1010212 D 298386 CDS YP_129127.1 54308107 3123412 1011509..1011943 1 NC_006370.1 possibly involved in flagella export; flagellar protein FlaG 1011943 3123412 PBPRA0914 Photobacterium profundum SS9 flagellar protein FlaG YP_129127.1 1011509 D 298386 CDS YP_129128.1 54308108 3124172 1011969..1013342 1 NC_006370.1 flagellar hook-associated protein 2 1013342 3124172 PBPRA0915 Photobacterium profundum SS9 flagellar hook-associated protein 2 YP_129128.1 1011969 D 298386 CDS YP_129129.1 54308109 3122247 1013450..1013734 1 NC_006370.1 flagellar rod protein FlaI 1013734 3122247 PBPRA0916 Photobacterium profundum SS9 flagellar rod protein FlaI YP_129129.1 1013450 D 298386 CDS YP_129130.1 54308110 3124719 1013744..1014154 1 NC_006370.1 flagellin specific chaperone; flagellar protein FliS 1014154 fliS 3124719 fliS Photobacterium profundum SS9 flagellar protein FliS YP_129130.1 1013744 D 298386 CDS YP_129131.1 54308111 3123634 1014497..1015954 1 NC_006370.1 polar flagellar protein FlaK 1015954 3123634 PBPRA0918 Photobacterium profundum SS9 polar flagellar protein FlaK YP_129131.1 1014497 D 298386 CDS YP_129132.1 54308112 3122938 complement(1016318..1017523) 1 NC_006370.1 transposase 1017523 3122938 PBPRA0919 Photobacterium profundum SS9 transposase YP_129132.1 1016318 R 298386 CDS YP_129133.1 54308113 3123066 1017834..1018919 1 NC_006370.1 sensory box sensor histidine kinase 1018919 3123066 PBPRA0920 Photobacterium profundum SS9 sensory box sensor histidine kinase YP_129133.1 1017834 D 298386 CDS YP_129134.1 54308114 3123311 1018950..1020350 1 NC_006370.1 response regulator 1020350 3123311 PBPRA0921 Photobacterium profundum SS9 response regulator YP_129134.1 1018950 D 298386 CDS YP_129135.1 54308115 3122426 1020472..1020783 1 NC_006370.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 1020783 fliE 3122426 fliE Photobacterium profundum SS9 flagellar hook-basal body protein FliE YP_129135.1 1020472 D 298386 CDS YP_129136.1 54308116 3122531 1020800..1022542 1 NC_006370.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1022542 fliF 3122531 fliF Photobacterium profundum SS9 flagellar MS-ring protein YP_129136.1 1020800 D 298386 CDS YP_129137.1 54308117 3122940 1022529..1023578 1 NC_006370.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1023578 fliG 3122940 fliG Photobacterium profundum SS9 flagellar motor switch protein G YP_129137.1 1022529 D 298386 CDS YP_129138.1 54308118 3122197 1023613..1024413 1 NC_006370.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 1024413 fliH 3122197 fliH Photobacterium profundum SS9 flagellar assembly protein H YP_129138.1 1023613 D 298386 CDS YP_129139.1 54308119 3123138 1024413..1025735 1 NC_006370.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1025735 fliI 3123138 fliI Photobacterium profundum SS9 flagellum-specific ATP synthase YP_129139.1 1024413 D 298386 CDS YP_129140.1 54308120 3125099 1025766..1026206 1 NC_006370.1 rod/hook and filament chaperone; flagellar biosynthesis chaperone 1026206 fliJ 3125099 fliJ Photobacterium profundum SS9 flagellar biosynthesis chaperone YP_129140.1 1025766 D 298386 CDS YP_129141.1 54308121 3124565 1026278..1028185 1 NC_006370.1 polar flagellar hook-length control protein FliK 1028185 3124565 PBPRA0928 Photobacterium profundum SS9 polar flagellar hook-length control protein FliK YP_129141.1 1026278 D 298386 CDS YP_129142.1 54308122 3121970 1028267..1028761 1 NC_006370.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body protein FliL 1028761 fliL 3121970 fliL Photobacterium profundum SS9 flagellar basal body protein FliL YP_129142.1 1028267 D 298386 CDS YP_129143.1 54308123 3123862 1028769..1029815 1 NC_006370.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 1029815 fliM 3123862 fliM Photobacterium profundum SS9 flagellar motor switch protein FliM YP_129143.1 1028769 D 298386 CDS YP_129144.1 54308124 3125251 1029833..1030222 1 NC_006370.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 1030222 fliN 3125251 fliN Photobacterium profundum SS9 flagellar motor switch protein YP_129144.1 1029833 D 298386 CDS YP_129145.1 54308125 3123940 1030622..1031476 1 NC_006370.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 1031476 fliP 3123940 fliP Photobacterium profundum SS9 flagellar biosynthesis protein FliP YP_129145.1 1030622 D 298386 CDS YP_129146.1 54308126 3124420 1031539..1031808 1 NC_006370.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 1031808 fliQ 3124420 fliQ Photobacterium profundum SS9 flagellar biosynthesis protein FliQ YP_129146.1 1031539 D 298386 CDS YP_129147.1 54308127 3124736 1031894..1032676 1 NC_006370.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 1032676 fliR 3124736 fliR Photobacterium profundum SS9 flagellar biosynthesis protein FliR YP_129147.1 1031894 D 298386 CDS YP_129148.1 54308128 3123276 1032676..1033806 1 NC_006370.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1033806 flhB 3123276 flhB Photobacterium profundum SS9 flagellar biosynthesis protein FlhB YP_129148.1 1032676 D 298386 CDS YP_129149.1 54308129 3125327 1034110..1036206 1 NC_006370.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1036206 flhA 3125327 flhA Photobacterium profundum SS9 flagellar biosynthesis protein FlhA YP_129149.1 1034110 D 298386 CDS YP_129150.2 161936323 3123104 1036311..1038053 1 NC_006370.1 positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 1038053 flhF 3123104 flhF Photobacterium profundum SS9 flagellar biosynthesis regulator FlhF YP_129150.2 1036311 D 298386 CDS YP_129151.1 54308131 3123288 1038046..1038933 1 NC_006370.1 MinD-related protein 1038933 3123288 PBPRA0938 Photobacterium profundum SS9 MinD-related protein YP_129151.1 1038046 D 298386 CDS YP_129152.1 54308132 3123980 1038926..1039648 1 NC_006370.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 1039648 fliA 3123980 fliA Photobacterium profundum SS9 flagellar biosynthesis sigma factor YP_129152.1 1038926 D 298386 CDS YP_129153.1 54308133 3123330 1039712..1040095 1 NC_006370.1 chemotaxis protein CheY 1040095 3123330 PBPRA0940 Photobacterium profundum SS9 chemotaxis protein CheY YP_129153.1 1039712 D 298386 CDS YP_129154.1 54308134 3122696 1040134..1040850 1 NC_006370.1 chemotaxis protein CheZ 1040850 3122696 PBPRA0941 Photobacterium profundum SS9 chemotaxis protein CheZ YP_129154.1 1040134 D 298386 CDS YP_129155.1 54308135 3124204 1040860..1043100 1 NC_006370.1 chemotaxis protein CheA 1043100 3124204 PBPRA0942 Photobacterium profundum SS9 chemotaxis protein CheA YP_129155.1 1040860 D 298386 CDS YP_129156.1 54308136 3122451 1043187..1044371 1 NC_006370.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1044371 3122451 PBPRA0943 Photobacterium profundum SS9 chemotaxis-specific methylesterase YP_129156.1 1043187 D 298386 CDS YP_129157.1 54308137 3124556 1044382..1045161 1 NC_006370.1 SOJ-like and chromosome partitioning protein 1045161 3124556 PBPRA0944 Photobacterium profundum SS9 SOJ-like and chromosome partitioning protein YP_129157.1 1044382 D 298386 CDS YP_129158.1 54308138 3124605 1045151..1046272 1 NC_006370.1 hypothetical protein 1046272 3124605 PBPRA0945 Photobacterium profundum SS9 hypothetical protein YP_129158.1 1045151 D 298386 CDS YP_129159.1 54308139 3124473 1046296..1046790 1 NC_006370.1 purine-binding chemotaxis protein CheW 1046790 3124473 PBPRA0946 Photobacterium profundum SS9 purine-binding chemotaxis protein CheW YP_129159.1 1046296 D 298386 CDS YP_129160.1 54308140 3123562 1046766..1047224 1 NC_006370.1 hypothetical protein 1047224 3123562 PBPRA0947 Photobacterium profundum SS9 hypothetical protein YP_129160.1 1046766 D 298386 CDS YP_129161.1 54308141 3125479 1047854..1048504 1 NC_006370.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 1048504 3125479 PBPRA0948 Photobacterium profundum SS9 cytochrome c biogenesis protein CcmA YP_129161.1 1047854 D 298386 CDS YP_129162.1 54308142 3122098 1048510..1049178 1 NC_006370.1 heme exporter protein B 1049178 3122098 PBPRA0949 Photobacterium profundum SS9 heme exporter protein B YP_129162.1 1048510 D 298386 CDS YP_129163.1 54308143 3123094 1049468..1050076 1 NC_006370.1 heme exporter protein C 1050076 3123094 PBPRA0950 Photobacterium profundum SS9 heme exporter protein C YP_129163.1 1049468 D 298386 CDS YP_129164.1 54308144 3123397 1050287..1050772 1 NC_006370.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 1050772 3123397 PBPRA0951 Photobacterium profundum SS9 cytochrome c-type biogenesis protein CcmE YP_129164.1 1050287 D 298386 CDS YP_129165.1 54308145 3125425 1050769..1052757 1 NC_006370.1 cytochrome c-type biogenesis protein CcmF 1052757 3125425 PBPRA0952 Photobacterium profundum SS9 cytochrome c-type biogenesis protein CcmF YP_129165.1 1050769 D 298386 CDS YP_129166.1 54308146 3123850 1052777..1053304 1 NC_006370.1 thiol:disulfide interchange protein DsbE 1053304 3123850 PBPRA0953 Photobacterium profundum SS9 thiol:disulfide interchange protein DsbE YP_129166.1 1052777 D 298386 CDS YP_129167.1 54308147 3125537 1053301..1053828 1 NC_006370.1 cytochrome c-type biogenesis protein 1053828 3125537 PBPRA0954 Photobacterium profundum SS9 cytochrome c-type biogenesis protein YP_129167.1 1053301 D 298386 CDS YP_129168.1 54308148 3125352 1053825..1055096 1 NC_006370.1 cytochrome c-type biogenesis protein 1055096 3125352 PBPRA0955 Photobacterium profundum SS9 cytochrome c-type biogenesis protein YP_129168.1 1053825 D 298386 CDS YP_129169.1 54308149 3125488 1055195..1055980 1 NC_006370.1 hypothetical protein 1055980 3125488 PBPRA0956 Photobacterium profundum SS9 hypothetical protein YP_129169.1 1055195 D 298386 CDS YP_129170.1 54308150 3125464 complement(1056086..1057378) 1 NC_006370.1 long-chain fatty acid transport protein 1057378 3125464 PBPRA0957 Photobacterium profundum SS9 long-chain fatty acid transport protein YP_129170.1 1056086 R 298386 CDS YP_129171.1 54308151 3125066 complement(1057734..1058984) 1 NC_006370.1 long-chain fatty acid transport protein 1058984 3125066 PBPRA0958 Photobacterium profundum SS9 long-chain fatty acid transport protein YP_129171.1 1057734 R 298386 CDS YP_129172.1 54308152 3125096 complement(1059302..1060015) 1 NC_006370.1 hypothetical protein 1060015 3125096 PBPRA0959 Photobacterium profundum SS9 hypothetical protein YP_129172.1 1059302 R 298386 CDS YP_129173.1 54308153 3125150 complement(1060002..1060637) 1 NC_006370.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 1060637 3125150 PBPRA0960 Photobacterium profundum SS9 RNA polymerase sigma factor YP_129173.1 1060002 R 298386 CDS YP_129174.1 54308154 3125106 1061286..1062596 1 NC_006370.1 FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 1062596 fadI 3125106 fadI Photobacterium profundum SS9 3-ketoacyl-CoA thiolase YP_129174.1 1061286 D 298386 CDS YP_129175.1 54308155 3125191 1062596..1064743 1 NC_006370.1 multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha 1064743 fadJ 3125191 fadJ Photobacterium profundum SS9 multifunctional fatty acid oxidation complex subunit alpha YP_129175.1 1062596 D 298386 CDS YP_129176.1 54308156 3125080 complement(1064883..1067708) 1 NC_006370.1 peptidase insulinase family 1067708 3125080 PBPRA0963 Photobacterium profundum SS9 peptidase insulinase family YP_129176.1 1064883 R 298386 CDS YP_129177.1 54308157 3124887 1068154..1068624 1 NC_006370.1 phosphohistidine phosphatase 1068624 3124887 PBPRA0964 Photobacterium profundum SS9 phosphohistidine phosphatase YP_129177.1 1068154 D 298386 CDS YP_129178.1 54308158 3122467 1068774..1069217 1 NC_006370.1 hypothetical protein 1069217 3122467 PBPRA0965 Photobacterium profundum SS9 hypothetical protein YP_129178.1 1068774 D 298386 CDS YP_129179.1 54308159 3124871 complement(1069338..1069868) 1 NC_006370.1 hypothetical protein 1069868 3124871 PBPRA0966 Photobacterium profundum SS9 hypothetical protein YP_129179.1 1069338 R 298386 CDS YP_129180.1 54308160 3124897 1069922..1070854 1 NC_006370.1 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1070854 3124897 PBPRA0967 Photobacterium profundum SS9 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_129180.1 1069922 D 298386 CDS YP_129181.1 54308161 3124999 complement(1070948..1071646) 1 NC_006370.1 YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His; queuosine biosynthesis protein QueC 1071646 3124999 PBPRA0968 Photobacterium profundum SS9 queuosine biosynthesis protein QueC YP_129181.1 1070948 R 298386 CDS YP_129182.1 54308162 3125131 complement(1071930..1073015) 1 NC_006370.1 cysteine synthase/cystathionine (CysK) 1073015 3125131 PBPRA0969 Photobacterium profundum SS9 cysteine synthase/cystathionine (CysK) YP_129182.1 1071930 R 298386 CDS YP_129183.1 54308163 3122886 1073196..1073657 1 NC_006370.1 AsnC family transcriptional regulator 1073657 3122886 PBPRA0970 Photobacterium profundum SS9 AsnC family transcriptional regulator YP_129183.1 1073196 D 298386 CDS YP_129184.1 54308164 3125213 1073973..1075715 1 NC_006370.1 transport ATP-binding protein MsbA 1075715 3125213 PBPRA0971 Photobacterium profundum SS9 transport ATP-binding protein MsbA YP_129184.1 1073973 D 298386 CDS YP_129185.1 54308165 3124972 1075715..1077493 1 NC_006370.1 ABC transporter ATP-binding protein 1077493 3124972 PBPRA0972 Photobacterium profundum SS9 ABC transporter ATP-binding protein YP_129185.1 1075715 D 298386 CDS YP_129186.1 54308166 3122135 complement(1077558..1078445) 1 NC_006370.1 acyl-CoA thioesterase II 1078445 3122135 PBPRA0973 Photobacterium profundum SS9 acyl-CoA thioesterase II YP_129186.1 1077558 R 298386 CDS YP_129187.1 54308167 3125130 1078549..1078968 1 NC_006370.1 lipoprotein-like protein 1078968 3125130 PBPRA0974 Photobacterium profundum SS9 lipoprotein-like protein YP_129187.1 1078549 D 298386 CDS YP_129188.1 54308168 3124640 complement(1079100..1079465) 1 NC_006370.1 methylated DNA-proteincysteine methyltransferase 1079465 3124640 PBPRA0975 Photobacterium profundum SS9 methylated DNA-proteincysteine methyltransferase YP_129188.1 1079100 R 298386 CDS YP_129189.1 54308169 3125298 1079510..1080241 1 NC_006370.1 hypothetical protein 1080241 3125298 PBPRA0976 Photobacterium profundum SS9 hypothetical protein YP_129189.1 1079510 D 298386 CDS YP_129190.1 54308170 3123583 1080340..1080591 1 NC_006370.1 hypothetical protein 1080591 3123583 PBPRA0977 Photobacterium profundum SS9 hypothetical protein YP_129190.1 1080340 D 298386 CDS YP_129191.1 54308171 3125341 1080630..1080959 1 NC_006370.1 hypothetical protein 1080959 3125341 PBPRA0978 Photobacterium profundum SS9 hypothetical protein YP_129191.1 1080630 D 298386 CDS YP_129192.1 54308172 3122227 1081249..1082979 1 NC_006370.1 transposase 1082979 3122227 PBPRA0979 Photobacterium profundum SS9 transposase YP_129192.1 1081249 D 298386 CDS YP_129193.1 54308173 3124626 complement(1082942..1083892) 1 NC_006370.1 transposase 1083892 3124626 PBPRA0980 Photobacterium profundum SS9 transposase YP_129193.1 1082942 R 298386 CDS YP_129194.1 54308174 3123442 complement(1084150..1084629) 1 NC_006370.1 copper tolerance protein 1084629 3123442 PBPRA0981 Photobacterium profundum SS9 copper tolerance protein YP_129194.1 1084150 R 298386 CDS YP_129195.1 54308175 3124738 complement(1084646..1085575) 1 NC_006370.1 copper resistance protein B precursor 1085575 3124738 PBPRA0982 Photobacterium profundum SS9 copper resistance protein B precursor YP_129195.1 1084646 R 298386 CDS YP_129196.1 54308176 3122070 complement(1085572..1087365) 1 NC_006370.1 hypothetical protein 1087365 3122070 PBPRA0983 Photobacterium profundum SS9 hypothetical protein YP_129196.1 1085572 R 298386 CDS YP_129197.1 54308177 3122204 1087502..1087888 1 NC_006370.1 hypothetical protein 1087888 3122204 PBPRA0984 Photobacterium profundum SS9 hypothetical protein YP_129197.1 1087502 D 298386 CDS YP_129198.1 54308178 3122134 1087975..1088280 1 NC_006370.1 hypothetical protein 1088280 3122134 PBPRA0985 Photobacterium profundum SS9 hypothetical protein YP_129198.1 1087975 D 298386 CDS YP_129199.1 54308179 3123655 1088363..1089058 1 NC_006370.1 two component response regulator transcription regulator protein 1089058 3123655 PBPRA0986 Photobacterium profundum SS9 two component response regulator transcription regulator protein YP_129199.1 1088363 D 298386 CDS YP_129200.1 54308180 3121993 1089055..1090407 1 NC_006370.1 two component sensor protein 1090407 3121993 PBPRA0987 Photobacterium profundum SS9 two component sensor protein YP_129200.1 1089055 D 298386 CDS YP_129201.1 54308181 3122413 1090636..1090947 1 NC_006370.1 hypothetical protein 1090947 3122413 PBPRA0988 Photobacterium profundum SS9 hypothetical protein YP_129201.1 1090636 D 298386 CDS YP_129202.1 54308182 3122007 1091902..1093857 1 NC_006370.1 methyl-accepting chemotaxis protein 1093857 3122007 PBPRA0989 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_129202.1 1091902 D 298386 CDS YP_129203.1 54308183 3122165 1094452..1095387 1 NC_006370.1 transporter 1095387 3122165 PBPRA0990 Photobacterium profundum SS9 transporter YP_129203.1 1094452 D 298386 CDS YP_129204.1 54308184 3124924 1095400..1096860 1 NC_006370.1 hypothetical protein 1096860 3124924 PBPRA0991 Photobacterium profundum SS9 hypothetical protein YP_129204.1 1095400 D 298386 CDS YP_129205.1 54308185 3122108 complement(1096917..1097828) 1 NC_006370.1 transcriptional regulator 1097828 3122108 PBPRA0992 Photobacterium profundum SS9 transcriptional regulator YP_129205.1 1096917 R 298386 CDS YP_129206.1 54308186 3122981 1098327..1099559 1 NC_006370.1 amidinotransferase 1099559 3122981 PBPRA0993 Photobacterium profundum SS9 amidinotransferase YP_129206.1 1098327 D 298386 CDS YP_129207.1 54308187 3122693 1099969..1102011 1 NC_006370.1 hypothetical protein 1102011 3122693 PBPRA0994 Photobacterium profundum SS9 hypothetical protein YP_129207.1 1099969 D 298386 CDS YP_129208.1 54308188 3122573 1102412..1102900 1 NC_006370.1 hypothetical protein 1102900 3122573 PBPRA0995 Photobacterium profundum SS9 hypothetical protein YP_129208.1 1102412 D 298386 CDS YP_129209.1 54308189 3122740 complement(1103057..1103587) 1 NC_006370.1 hypothetical protein 1103587 3122740 PBPRA0996 Photobacterium profundum SS9 hypothetical protein YP_129209.1 1103057 R 298386 CDS YP_129210.1 54308190 3125389 complement(1103588..1104319) 1 NC_006370.1 hypothetical protein 1104319 3125389 PBPRA0997 Photobacterium profundum SS9 hypothetical protein YP_129210.1 1103588 R 298386 CDS YP_129211.1 54308191 3121969 complement(1104687..1106576) 1 NC_006370.1 hypothetical protein 1106576 3121969 PBPRA0998 Photobacterium profundum SS9 hypothetical protein YP_129211.1 1104687 R 298386 CDS YP_129212.1 54308192 3122585 1106877..1107269 1 NC_006370.1 hypothetical protein 1107269 3122585 PBPRA0999 Photobacterium profundum SS9 hypothetical protein YP_129212.1 1106877 D 298386 CDS YP_129213.1 54308193 3124369 complement(1107317..1108684) 1 NC_006370.1 signal transduction protein 1108684 3124369 PBPRA1000 Photobacterium profundum SS9 signal transduction protein YP_129213.1 1107317 R 298386 CDS YP_129214.1 54308194 3122430 complement(1108681..1109358) 1 NC_006370.1 transcriptionalregulator 1109358 3122430 PBPRA1001 Photobacterium profundum SS9 transcriptionalregulator YP_129214.1 1108681 R 298386 CDS YP_129215.1 54308195 3122383 complement(1109413..1109961) 1 NC_006370.1 hypothetical protein 1109961 3122383 PBPRA1002 Photobacterium profundum SS9 hypothetical protein YP_129215.1 1109413 R 298386 CDS YP_129216.1 54308196 3125055 complement(1110086..1113211) 1 NC_006370.1 cation efflux system transmembrane protein 1113211 3125055 PBPRA1003 Photobacterium profundum SS9 cation efflux system transmembrane protein YP_129216.1 1110086 R 298386 CDS YP_129217.1 54308197 3123423 complement(1113208..1114788) 1 NC_006370.1 cation efflux system transmembrane protein 1114788 3123423 PBPRA1004 Photobacterium profundum SS9 cation efflux system transmembrane protein YP_129217.1 1113208 R 298386 CDS YP_129218.1 54308198 3122586 complement(1114797..1116149) 1 NC_006370.1 outer membrane cation efflux protein 1116149 3122586 PBPRA1005 Photobacterium profundum SS9 outer membrane cation efflux protein YP_129218.1 1114797 R 298386 CDS YP_129219.1 54308199 3122838 complement(1116343..1116693) 1 NC_006370.1 hypothetical protein 1116693 3122838 PBPRA1006 Photobacterium profundum SS9 hypothetical protein YP_129219.1 1116343 R 298386 CDS YP_129220.1 54308200 3122894 1117368..1118324 1 NC_006370.1 cation efflux family protein 1118324 3122894 PBPRA1007 Photobacterium profundum SS9 cation efflux family protein YP_129220.1 1117368 D 298386 CDS YP_129221.1 54308201 3122954 1118344..1118760 1 NC_006370.1 MarR family transcriptional regulator 1118760 3122954 PBPRA1008 Photobacterium profundum SS9 MarR family transcriptional regulator YP_129221.1 1118344 D 298386 CDS YP_129222.1 54308202 3122601 complement(1118814..1119011) 1 NC_006370.1 hypothetical protein 1119011 3122601 PBPRA1009 Photobacterium profundum SS9 hypothetical protein YP_129222.1 1118814 R 298386 CDS YP_129223.1 54308203 3122785 complement(1119051..1119602) 1 NC_006370.1 primosomal replication protein N`` 1119602 3122785 PBPRA1010 Photobacterium profundum SS9 primosomal replication protein N`` YP_129223.1 1119051 R 298386 CDS YP_129224.1 54308204 3122930 complement(1119721..1121799) 1 NC_006370.1 helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 1121799 dinG 3122930 dinG Photobacterium profundum SS9 ATP-dependent DNA helicase DinG YP_129224.1 1119721 R 298386 CDS YP_129225.1 54308205 3122534 1122337..1123317 1 NC_006370.1 OmpH porin-like protein H precursor 1123317 3122534 PBPRA1012 Photobacterium profundum SS9 OmpH porin-like protein H precursor YP_129225.1 1122337 D 298386 CDS YP_129226.1 54308206 3122952 1123518..1124168 1 NC_006370.1 hypothetical protein 1124168 3122952 PBPRA1013 Photobacterium profundum SS9 hypothetical protein YP_129226.1 1123518 D 298386 CDS YP_129227.1 54308207 3125283 complement(1124325..1124687) 1 NC_006370.1 DksA-type zinc finger protein 1124687 3125283 PBPRA1014 Photobacterium profundum SS9 DksA-type zinc finger protein YP_129227.1 1124325 R 298386 CDS YP_129228.1 54308208 3124899 1125068..1125442 1 NC_006370.1 hypothetical protein 1125442 3124899 PBPRA1015 Photobacterium profundum SS9 hypothetical protein YP_129228.1 1125068 D 298386 CDS YP_129229.1 54308209 3123526 1125634..1126158 1 NC_006370.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1126158 3123526 PBPRA1016 Photobacterium profundum SS9 adenine phosphoribosyltransferase YP_129229.1 1125634 D 298386 CDS YP_129230.1 54308210 3123458 1126323..1128584 1 NC_006370.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 1128584 3123458 PBPRA1017 Photobacterium profundum SS9 DNA polymerase III subunits gamma and tau YP_129230.1 1126323 D 298386 CDS YP_129231.1 54308211 3123127 1128661..1128972 1 NC_006370.1 hypothetical protein 1128972 3123127 PBPRA1018 Photobacterium profundum SS9 hypothetical protein YP_129231.1 1128661 D 298386 CDS YP_129232.1 54308212 3123433 1128976..1129584 1 NC_006370.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1129584 recR 3123433 recR Photobacterium profundum SS9 recombination protein RecR YP_129232.1 1128976 D 298386 CDS YP_129233.1 54308213 3123137 1130084..1131163 1 NC_006370.1 hypothetical protein 1131163 3123137 PBPRA1020 Photobacterium profundum SS9 hypothetical protein YP_129233.1 1130084 D 298386 CDS YP_129234.1 54308214 3122118 complement(1131245..1131793) 1 NC_006370.1 ToxS 1131793 3122118 PBPRA1021 Photobacterium profundum SS9 ToxS YP_129234.1 1131245 R 298386 CDS YP_129235.1 54308215 3123119 complement(1131784..1132656) 1 NC_006370.1 transcription activator ToxR 1132656 3123119 PBPRA1022 Photobacterium profundum SS9 transcription activator ToxR YP_129235.1 1131784 R 298386 CDS YP_129236.1 54308216 3125247 1132849..1134753 1 NC_006370.1 molecular chaperone; heat shock protein 90 1134753 3125247 PBPRA1023 Photobacterium profundum SS9 heat shock protein 90 YP_129236.1 1132849 D 298386 CDS YP_129237.1 54308217 3125182 1135012..1135656 1 NC_006370.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1135656 adk 3125182 adk Photobacterium profundum SS9 adenylate kinase YP_129237.1 1135012 D 298386 CDS YP_129238.1 54308218 3125329 1135876..1136874 1 NC_006370.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1136874 hemH 3125329 hemH Photobacterium profundum SS9 ferrochelatase YP_129238.1 1135876 D 298386 CDS YP_129239.1 54308219 3123278 1136996..1138300 1 NC_006370.1 inosine-guanosine kinase 1138300 3123278 PBPRA1026 Photobacterium profundum SS9 inosine-guanosine kinase YP_129239.1 1136996 D 298386 CDS YP_129240.1 54308220 3123305 complement(1138453..1140120) 1 NC_006370.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B 1140120 asnB 3123305 asnB Photobacterium profundum SS9 asparagine synthetase B YP_129240.1 1138453 R 298386 CDS YP_129241.1 54308221 3123414 complement(1140420..1142006) 1 NC_006370.1 glutathione-regulated potassium-efflux system protein KefB 1142006 3123414 PBPRA1028 Photobacterium profundum SS9 glutathione-regulated potassium-efflux system protein KefB YP_129241.1 1140420 R 298386 CDS YP_129242.1 54308222 3123152 complement(1142297..1143511) 1 NC_006370.1 N-acetylglucosamine repressor 1143511 3123152 PBPRA1029 Photobacterium profundum SS9 N-acetylglucosamine repressor YP_129242.1 1142297 R 298386 CDS YP_129243.1 54308223 3123831 complement(1143515..1144657) 1 NC_006370.1 catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; N-acetylglucosamine-6-phosphate deacetylase 1144657 nagA 3123831 nagA Photobacterium profundum SS9 N-acetylglucosamine-6-phosphate deacetylase YP_129243.1 1143515 R 298386 CDS YP_129244.1 54308224 3123601 complement(1144668..1145468) 1 NC_006370.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase 1145468 nagB 3123601 nagB Photobacterium profundum SS9 glucosamine-6-phosphate deaminase YP_129244.1 1144668 R 298386 CDS YP_129245.1 54308225 3124919 1145725..1147215 1 NC_006370.1 PTS permease for N-acetylglucosamine and glucose 1147215 3124919 PBPRA1032 Photobacterium profundum SS9 PTS permease for N-acetylglucosamine and glucose YP_129245.1 1145725 D 298386 CDS YP_129246.1 54308226 3125035 1147302..1150040 1 NC_006370.1 beta-N-acetylhexosaminidase 1150040 3125035 PBPRA1033 Photobacterium profundum SS9 beta-N-acetylhexosaminidase YP_129246.1 1147302 D 298386 CDS YP_129247.1 54308227 3122893 1150392..1152059 1 NC_006370.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 1152059 3122893 PBPRA1034 Photobacterium profundum SS9 glutaminyl-tRNA synthetase YP_129247.1 1150392 D 298386 CDS YP_129248.1 54308228 3125532 complement(1152168..1152614) 1 NC_006370.1 negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator 1152614 fur 3125532 fur Photobacterium profundum SS9 ferric uptake regulator YP_129248.1 1152168 R 298386 CDS YP_129249.1 54308229 3122386 complement(1153285..1153812) 1 NC_006370.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 1153812 3122386 PBPRA1036 Photobacterium profundum SS9 flavodoxin FldA YP_129249.1 1153285 R 298386 CDS YP_129250.1 54308230 3123903 complement(1153977..1154198) 1 NC_006370.1 hypothetical protein 1154198 3123903 PBPRA1037 Photobacterium profundum SS9 hypothetical protein YP_129250.1 1153977 R 298386 CDS YP_129251.1 54308231 3123325 complement(1154262..1155026) 1 NC_006370.1 esterase 1155026 3123325 PBPRA1038 Photobacterium profundum SS9 esterase YP_129251.1 1154262 R 298386 CDS YP_129252.2 161936322 3121954 1155131..1155667 1 NC_006370.1 negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 1155667 3121954 PBPRA1039 Photobacterium profundum SS9 replication initiation regulator SeqA YP_129252.2 1155131 D 298386 CDS YP_129253.1 54308233 3122865 1155703..1157349 1 NC_006370.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 1157349 3122865 PBPRA1040 Photobacterium profundum SS9 phosphoglucomutase YP_129253.1 1155703 D 298386 CDS YP_129254.1 54308234 3124627 complement(1157437..1158255) 1 NC_006370.1 hypothetical protein 1158255 3124627 PBPRA1041 Photobacterium profundum SS9 hypothetical protein YP_129254.1 1157437 R 298386 CDS YP_129255.1 54308235 3122742 1158657..1159415 1 NC_006370.1 hypothetical protein 1159415 3122742 PBPRA1042 Photobacterium profundum SS9 hypothetical protein YP_129255.1 1158657 D 298386 CDS YP_129256.2 161936321 3123611 complement(1159467..1160756) 1 NC_006370.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 1160756 gltA 3123611 gltA Photobacterium profundum SS9 type II citrate synthase YP_129256.2 1159467 R 298386 CDS YP_129257.1 54308237 3124264 1161168..1161548 1 NC_006370.1 succinate dehydrogenase cytochrome b556 large membrane subunit 1161548 sdhC 3124264 sdhC Photobacterium profundum SS9 succinate dehydrogenase cytochrome b556 large membrane subunit YP_129257.1 1161168 D 298386 CDS YP_129258.1 54308238 3125249 1161542..1161889 1 NC_006370.1 succinate dehydrogenase, hydrophobic membrane anchor protein 1161889 3125249 PBPRA1045 Photobacterium profundum SS9 succinate dehydrogenase, hydrophobic membrane anchor protein YP_129258.1 1161542 D 298386 CDS YP_129259.2 161936320 3122035 1161890..1163656 1 NC_006370.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1163656 sdhA 3122035 sdhA Photobacterium profundum SS9 succinate dehydrogenase flavoprotein subunit YP_129259.2 1161890 D 298386 CDS YP_129260.1 54308240 3122450 1163670..1164383 1 NC_006370.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 1164383 sdhB 3122450 sdhB Photobacterium profundum SS9 succinate dehydrogenase iron-sulfur subunit YP_129260.1 1163670 D 298386 CDS YP_129261.1 54308241 3124166 1164493..1167306 1 NC_006370.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 1167306 sucA 3124166 sucA Photobacterium profundum SS9 2-oxoglutarate dehydrogenase E1 YP_129261.1 1164493 D 298386 CDS YP_129262.1 54308242 3124575 1167335..1168540 1 NC_006370.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 1168540 3124575 PBPRA1049 Photobacterium profundum SS9 dihydrolipoamide succinyltransferase YP_129262.1 1167335 D 298386 CDS YP_129263.1 54308243 3122324 1168678..1169844 1 NC_006370.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 1169844 sucC 3122324 sucC Photobacterium profundum SS9 succinyl-CoA synthetase subunit beta YP_129263.1 1168678 D 298386 CDS YP_129264.1 54308244 3122236 1169844..1170716 1 NC_006370.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 1170716 3122236 PBPRA1051 Photobacterium profundum SS9 succinyl-CoA synthetase subunit alpha YP_129264.1 1169844 D 298386 CDS YP_129265.1 54308245 3123513 1171055..1171363 1 NC_006370.1 hypothetical protein 1171363 3123513 PBPRA1052 Photobacterium profundum SS9 hypothetical protein YP_129265.1 1171055 D 298386 CDS YP_129266.1 54308246 3123837 complement(1171474..1172259) 1 NC_006370.1 ABC-type Mn2+/Zn2+ transport system, permease component 1172259 3123837 PBPRA1053 Photobacterium profundum SS9 ABC-type Mn2+/Zn2+ transport system, permease component YP_129266.1 1171474 R 298386 CDS YP_129267.1 54308247 3125086 complement(1172252..1173025) 1 NC_006370.1 zinc ABC transporter ATP-binding protein 1173025 3125086 PBPRA1054 Photobacterium profundum SS9 zinc ABC transporter ATP-binding protein YP_129267.1 1172252 R 298386 CDS YP_129268.1 54308248 3124391 1173034..1173402 1 NC_006370.1 hypothetical protein 1173402 3124391 PBPRA1055 Photobacterium profundum SS9 hypothetical protein YP_129268.1 1173034 D 298386 CDS YP_129269.1 54308249 3123593 1173413..1174015 1 NC_006370.1 zinc ABC transporter periplasmic substrate-binding protein 1174015 3123593 PBPRA1056 Photobacterium profundum SS9 zinc ABC transporter periplasmic substrate-binding protein YP_129269.1 1173413 D 298386 CDS YP_129270.1 54308250 3125468 1174018..1175367 1 NC_006370.1 hypothetical protein 1175367 3125468 PBPRA1057 Photobacterium profundum SS9 hypothetical protein YP_129270.1 1174018 D 298386 CDS YP_129271.1 54308251 3123548 1175604..1175831 1 NC_006370.1 ferrous iron transport protein A 1175831 3123548 PBPRA1058 Photobacterium profundum SS9 ferrous iron transport protein A YP_129271.1 1175604 D 298386 CDS YP_129272.1 54308252 3124356 1175831..1178104 1 NC_006370.1 ferrous iron transport protein B 1178104 3124356 PBPRA1059 Photobacterium profundum SS9 ferrous iron transport protein B YP_129272.1 1175831 D 298386 CDS YP_129273.1 54308253 3124750 1178101..1178343 1 NC_006370.1 hypothetical protein 1178343 3124750 PBPRA1060 Photobacterium profundum SS9 hypothetical protein YP_129273.1 1178101 D 298386 CDS YP_129274.1 54308254 3122063 complement(1178435..1178863) 1 NC_006370.1 diadenosine tetraphosphate hydrolase 1178863 3122063 PBPRA1061 Photobacterium profundum SS9 diadenosine tetraphosphate hydrolase YP_129274.1 1178435 R 298386 CDS YP_129275.1 54308255 3124482 1179276..1179893 1 NC_006370.1 hypothetical protein 1179893 3124482 PBPRA1062 Photobacterium profundum SS9 hypothetical protein YP_129275.1 1179276 D 298386 CDS YP_129276.1 54308256 3122199 complement(1180062..1181081) 1 NC_006370.1 GGDEF family protein 1181081 3122199 PBPRA1063 Photobacterium profundum SS9 GGDEF family protein YP_129276.1 1180062 R 298386 CDS YP_129277.1 54308257 3124269 complement(1181301..1183031) 1 NC_006370.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 1183031 argS 3124269 argS Photobacterium profundum SS9 arginyl-tRNA synthetase YP_129277.1 1181301 R 298386 CDS YP_129278.1 54308258 3122716 1183461..1184051 1 NC_006370.1 hypothetical protein 1184051 3122716 PBPRA1065 Photobacterium profundum SS9 hypothetical protein YP_129278.1 1183461 D 298386 CDS YP_129279.1 54308259 3123859 complement(1184151..1184990) 1 NC_006370.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1184990 purU 3123859 purU Photobacterium profundum SS9 formyltetrahydrofolate deformylase YP_129279.1 1184151 R 298386 CDS YP_129280.1 54308260 3124367 complement(1185250..1186410) 1 NC_006370.1 hypothetical protein 1186410 3124367 PBPRA1067 Photobacterium profundum SS9 hypothetical protein YP_129280.1 1185250 R 298386 CDS YP_129281.1 54308261 3122799 complement(1186413..1187057) 1 NC_006370.1 hypothetical protein 1187057 3122799 PBPRA1068 Photobacterium profundum SS9 hypothetical protein YP_129281.1 1186413 R 298386 CDS YP_129282.1 54308262 3123184 complement(1187333..1187977) 1 NC_006370.1 hypothetical protein 1187977 3123184 PBPRA1069 Photobacterium profundum SS9 hypothetical protein YP_129282.1 1187333 R 298386 CDS YP_129283.1 54308263 3124493 1188489..1190432 1 NC_006370.1 ATP-dependent helicase 1190432 3124493 PBPRA1070 Photobacterium profundum SS9 ATP-dependent helicase YP_129283.1 1188489 D 298386 CDS YP_129284.1 54308264 3124475 1190448..1191158 1 NC_006370.1 hypothetical protein 1191158 3124475 PBPRA1071 Photobacterium profundum SS9 hypothetical protein YP_129284.1 1190448 D 298386 CDS YP_129285.1 54308265 3124689 1191282..1191563 1 NC_006370.1 hypothetical protein 1191563 3124689 PBPRA1072 Photobacterium profundum SS9 hypothetical protein YP_129285.1 1191282 D 298386 CDS YP_129286.1 54308266 3123834 1191710..1192264 1 NC_006370.1 starvation-inducible outer membrane lipoprotein 1192264 3123834 PBPRA1073 Photobacterium profundum SS9 starvation-inducible outer membrane lipoprotein YP_129286.1 1191710 D 298386 CDS YP_129287.1 54308267 3123502 1192296..1193198 1 NC_006370.1 hydrolase/acyltransferase 1193198 3123502 PBPRA1074 Photobacterium profundum SS9 hydrolase/acyltransferase YP_129287.1 1192296 D 298386 CDS YP_129288.1 54308268 3123459 1193351..1195042 1 NC_006370.1 Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 1195042 3123459 PBPRA1075 Photobacterium profundum SS9 long-chain-fatty-acid--CoA ligase YP_129288.1 1193351 D 298386 CDS YP_129289.1 54308269 3122424 1195431..1196555 1 NC_006370.1 ribonuclease D 1196555 3122424 PBPRA1076 Photobacterium profundum SS9 ribonuclease D YP_129289.1 1195431 D 298386 CDS YP_129290.1 54308270 3123084 complement(1196616..1196876) 1 NC_006370.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 1196876 minE 3123084 minE Photobacterium profundum SS9 cell division topological specificity factor MinE YP_129290.1 1196616 R 298386 CDS YP_129291.1 54308271 3123741 complement(1196883..1197695) 1 NC_006370.1 septum site-determining protein MinD 1197695 3123741 PBPRA1078 Photobacterium profundum SS9 septum site-determining protein MinD YP_129291.1 1196883 R 298386 CDS YP_129292.1 54308272 3122771 complement(1197718..1198380) 1 NC_006370.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 1198380 minC 3122771 minC Photobacterium profundum SS9 septum formation inhibitor YP_129292.1 1197718 R 298386 CDS YP_129293.1 54308273 3122130 1198561..1198881 1 NC_006370.1 hypothetical protein 1198881 3122130 PBPRA1080 Photobacterium profundum SS9 hypothetical protein YP_129293.1 1198561 D 298386 CDS YP_129294.1 54308274 3122147 1198890..1199861 1 NC_006370.1 lytic murein transglycosylase 1199861 3122147 PBPRA1081 Photobacterium profundum SS9 lytic murein transglycosylase YP_129294.1 1198890 D 298386 CDS YP_129295.1 54308275 3122845 complement(1200362..1200757) 1 NC_006370.1 DNA-binding protein H-NS 1200757 3122845 PBPRA1082 Photobacterium profundum SS9 DNA-binding protein H-NS YP_129295.1 1200362 R 298386 CDS YP_129296.1 54308276 3122709 1201505..1203004 1 NC_006370.1 Na+/H+ antiporter 1203004 3122709 PBPRA1083 Photobacterium profundum SS9 Na+/H+ antiporter YP_129296.1 1201505 D 298386 CDS YP_129297.1 54308277 3123989 1203249..1203827 1 NC_006370.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 1203827 3123989 PBPRA1084 Photobacterium profundum SS9 thymidine kinase YP_129297.1 1203249 D 298386 CDS YP_129298.1 54308278 3123515 complement(1203949..1204572) 1 NC_006370.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein 1204572 3123515 PBPRA1085 Photobacterium profundum SS9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein YP_129298.1 1203949 R 298386 CDS YP_129299.1 54308279 3124254 complement(1204569..1205342) 1 NC_006370.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 1205342 3124254 PBPRA1086 Photobacterium profundum SS9 imidazole glycerol phosphate synthase subunit HisF YP_129299.1 1204569 R 298386 CDS YP_129300.2 161936319 3124577 complement(1205362..1206096) 1 NC_006370.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 1206096 3124577 PBPRA1087 Photobacterium profundum SS9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_129300.2 1205362 R 298386 CDS YP_129301.1 54308281 3122244 complement(1206321..1206953) 1 NC_006370.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 1206953 hisH 3122244 hisH Photobacterium profundum SS9 imidazole glycerol phosphate synthase subunit HisH YP_129301.1 1206321 R 298386 CDS YP_129302.1 54308282 3123382 complement(1206953..1208038) 1 NC_006370.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 1208038 3123382 PBPRA1089 Photobacterium profundum SS9 imidazole glycerol-phosphate dehydratase/histidinol phosphatase YP_129302.1 1206953 R 298386 CDS YP_129303.1 54308283 3124655 complement(1208056..1209180) 1 NC_006370.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1209180 3124655 PBPRA1090 Photobacterium profundum SS9 histidinol-phosphate aminotransferase YP_129303.1 1208056 R 298386 CDS YP_129304.1 54308284 3123241 complement(1209183..1210514) 1 NC_006370.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1210514 hisD 3123241 hisD Photobacterium profundum SS9 histidinol dehydrogenase YP_129304.1 1209183 R 298386 CDS YP_129305.1 54308285 3124669 complement(1210519..1211415) 1 NC_006370.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 1211415 hisG 3124669 hisG Photobacterium profundum SS9 ATP phosphoribosyltransferase YP_129305.1 1210519 R 298386 CDS YP_129306.1 54308286 3124702 complement(1212301..1212837) 1 NC_006370.1 hypothetical protein 1212837 3124702 PBPRA1093 Photobacterium profundum SS9 hypothetical protein YP_129306.1 1212301 R 298386 CDS YP_129307.1 54308287 3122564 complement(1212840..1214063) 1 NC_006370.1 signal transduction protein 1214063 3122564 PBPRA1094 Photobacterium profundum SS9 signal transduction protein YP_129307.1 1212840 R 298386 CDS YP_129308.1 54308288 3124624 1214387..1215232 1 NC_006370.1 hypothetical protein 1215232 3124624 PBPRA1095 Photobacterium profundum SS9 hypothetical protein YP_129308.1 1214387 D 298386 CDS YP_129309.1 54308289 3125014 complement(1215315..1216052) 1 NC_006370.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 1216052 3125014 PBPRA1096 Photobacterium profundum SS9 UDP-2,3-diacylglucosamine hydrolase YP_129309.1 1215315 R 298386 CDS YP_129310.1 54308290 3124934 complement(1216093..1216590) 1 NC_006370.1 peptidyl-prolyl cis-trans isomerase B 1216590 3124934 PBPRA1097 Photobacterium profundum SS9 peptidyl-prolyl cis-trans isomerase B YP_129310.1 1216093 R 298386 CDS YP_129311.1 54308291 3124958 1216806..1218200 1 NC_006370.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1218200 cysS 3124958 cysS Photobacterium profundum SS9 cysteinyl-tRNA synthetase YP_129311.1 1216806 D 298386 CDS YP_129312.1 54308292 3125406 1218275..1218517 1 NC_006370.1 hypothetical protein 1218517 3125406 PBPRA1099 Photobacterium profundum SS9 hypothetical protein YP_129312.1 1218275 D 298386 CDS YP_129313.1 54308293 3122327 1218623..1219705 1 NC_006370.1 hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase 1219705 glpQ 3122327 glpQ Photobacterium profundum SS9 glycerophosphodiester phosphodiesterase YP_129313.1 1218623 D 298386 CDS YP_129314.1 54308294 3122380 complement(1219923..1220741) 1 NC_006370.1 potassium channel 1220741 3122380 PBPRA1101 Photobacterium profundum SS9 potassium channel YP_129314.1 1219923 R 298386 CDS YP_129315.1 54308295 3122706 complement(1220947..1221603) 1 NC_006370.1 hypothetical protein 1221603 3122706 PBPRA1102 Photobacterium profundum SS9 hypothetical protein YP_129315.1 1220947 R 298386 CDS YP_129316.1 54308296 3123068 1222327..1225032 1 NC_006370.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1225032 3123068 PBPRA1103 Photobacterium profundum SS9 bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_129316.1 1222327 D 298386 CDS YP_129317.1 54308297 3122978 complement(1225165..1225863) 1 NC_006370.1 short chain dehydrogenase 1225863 3122978 PBPRA1104 Photobacterium profundum SS9 short chain dehydrogenase YP_129317.1 1225165 R 298386 CDS YP_129318.1 54308298 3124412 complement(1226063..1226572) 1 NC_006370.1 hypothetical protein 1226572 3124412 PBPRA1105 Photobacterium profundum SS9 hypothetical protein YP_129318.1 1226063 R 298386 CDS YP_129319.1 54308299 3122406 complement(1226798..1227784) 1 NC_006370.1 hypothetical protein 1227784 3122406 PBPRA1106 Photobacterium profundum SS9 hypothetical protein YP_129319.1 1226798 R 298386 CDS YP_129320.1 54308300 3123182 complement(1227788..1229299) 1 NC_006370.1 hypothetical protein 1229299 3123182 PBPRA1107 Photobacterium profundum SS9 hypothetical protein YP_129320.1 1227788 R 298386 CDS YP_129321.1 54308301 3122239 complement(1229314..1230090) 1 NC_006370.1 hypothetical protein 1230090 3122239 PBPRA1108 Photobacterium profundum SS9 hypothetical protein YP_129321.1 1229314 R 298386 CDS YP_129322.1 54308302 3122858 complement(1230180..1231154) 1 NC_006370.1 hypothetical protein 1231154 3122858 PBPRA1109 Photobacterium profundum SS9 hypothetical protein YP_129322.1 1230180 R 298386 CDS YP_129323.1 54308303 3123142 complement(1231172..1231906) 1 NC_006370.1 hypothetical protein 1231906 3123142 PBPRA1110 Photobacterium profundum SS9 hypothetical protein YP_129323.1 1231172 R 298386 CDS YP_129324.1 54308304 3121949 complement(1232083..1232973) 1 NC_006370.1 hypothetical protein 1232973 3121949 PBPRA1111 Photobacterium profundum SS9 hypothetical protein YP_129324.1 1232083 R 298386 CDS YP_129325.1 54308305 3123405 1233303..1235096 1 NC_006370.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1235096 aspS 3123405 aspS Photobacterium profundum SS9 aspartyl-tRNA synthetase YP_129325.1 1233303 D 298386 CDS YP_129326.1 54308306 3122972 1235211..1235954 1 NC_006370.1 hypothetical protein 1235954 3122972 PBPRA1113 Photobacterium profundum SS9 hypothetical protein YP_129326.1 1235211 D 298386 CDS YP_129327.1 54308307 3123693 1235992..1236513 1 NC_006370.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1236513 ruvC 3123693 ruvC Photobacterium profundum SS9 Holliday junction resolvase YP_129327.1 1235992 D 298386 CDS YP_129328.1 54308308 3124774 1236736..1238196 1 NC_006370.1 methyl-accepting chemotaxis protein 1238196 3124774 PBPRA1115 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_129328.1 1236736 D 298386 CDS YP_129329.2 161936318 3123806 1238325..1238945 1 NC_006370.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1238945 ruvA 3123806 ruvA Photobacterium profundum SS9 Holliday junction DNA helicase RuvA YP_129329.2 1238325 D 298386 CDS YP_129330.1 54308310 3123083 1238967..1239980 1 NC_006370.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1239980 ruvB 3123083 ruvB Photobacterium profundum SS9 Holliday junction DNA helicase RuvB YP_129330.1 1238967 D 298386 CDS YP_129331.1 54308311 3123211 1241088..1243112 1 NC_006370.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1243112 3123211 PBPRA1118 Photobacterium profundum SS9 excinuclease ABC subunit B YP_129331.1 1241088 D 298386 CDS YP_129332.1 54308312 3122186 1243539..1244996 1 NC_006370.1 repressor protein luxO 1244996 3122186 PBPRA1119 Photobacterium profundum SS9 repressor protein luxO YP_129332.1 1243539 D 298386 CDS YP_129333.1 54308313 3123714 1245000..1245359 1 NC_006370.1 phosphorelay protein 1245359 3123714 PBPRA1120 Photobacterium profundum SS9 phosphorelay protein YP_129333.1 1245000 D 298386 CDS YP_129334.1 54308314 3123802 complement(1245321..1246226) 1 NC_006370.1 hypothetical protein 1246226 3123802 PBPRA1121 Photobacterium profundum SS9 hypothetical protein YP_129334.1 1245321 R 298386 CDS YP_129335.1 54308315 3124068 complement(1246424..1246999) 1 NC_006370.1 hypothetical protein 1246999 3124068 PBPRA1122 Photobacterium profundum SS9 hypothetical protein YP_129335.1 1246424 R 298386 CDS YP_129336.1 54308316 3123864 complement(1247174..1247470) 1 NC_006370.1 hypothetical protein 1247470 3123864 PBPRA1123 Photobacterium profundum SS9 hypothetical protein YP_129336.1 1247174 R 298386 CDS YP_129337.1 54308317 3123501 1247725..1248732 1 NC_006370.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 1248732 moaA 3123501 moaA Photobacterium profundum SS9 molybdenum cofactor biosynthesis protein A YP_129337.1 1247725 D 298386 CDS YP_129338.1 54308318 3122636 1248865..1249362 1 NC_006370.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 1249362 moaC 3122636 moaC Photobacterium profundum SS9 molybdenum cofactor biosynthesis protein MoaC YP_129338.1 1248865 D 298386 CDS YP_129339.1 54308319 3124734 1249359..1249604 1 NC_006370.1 catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase small subunit 1249604 moaD 3124734 moaD Photobacterium profundum SS9 molybdopterin synthase small subunit YP_129339.1 1249359 D 298386 CDS YP_129340.1 54308320 3124091 1249607..1250056 1 NC_006370.1 molybdenum cofactor biosynthesisprotein E 1250056 3124091 PBPRA1127 Photobacterium profundum SS9 molybdenum cofactor biosynthesisprotein E YP_129340.1 1249607 D 298386 CDS YP_129341.1 54308321 3123988 1250645..1251880 1 NC_006370.1 porin 1251880 3123988 PBPRA1128 Photobacterium profundum SS9 porin YP_129341.1 1250645 D 298386 CDS YP_129342.1 54308322 3123470 complement(1252073..1252519) 1 NC_006370.1 transcriptional regulator 1252519 3123470 PBPRA1129 Photobacterium profundum SS9 transcriptional regulator YP_129342.1 1252073 R 298386 CDS YP_129343.1 54308323 3124223 1252921..1253190 1 NC_006370.1 hypothetical protein 1253190 3124223 PBPRA1130 Photobacterium profundum SS9 hypothetical protein YP_129343.1 1252921 D 298386 CDS YP_129344.1 54308324 3124663 1253769..1255472 1 NC_006370.1 oligopeptide ABC transporter,periplasmic oligopeptide-binding protein 1255472 3124663 PBPRA1131 Photobacterium profundum SS9 oligopeptide ABC transporter,periplasmic oligopeptide-binding protein YP_129344.1 1253769 D 298386 CDS YP_129345.1 54308325 3124684 1255567..1256487 1 NC_006370.1 oligopeptide transporter permease 1256487 oppB 3124684 oppB Photobacterium profundum SS9 oligopeptide transporter permease YP_129345.1 1255567 D 298386 CDS YP_129346.1 54308326 3122008 1256499..1257413 1 NC_006370.1 oligopeptide ABC transporter 1257413 3122008 PBPRA1133 Photobacterium profundum SS9 oligopeptide ABC transporter YP_129346.1 1256499 D 298386 CDS YP_129347.1 54308327 3122891 1257501..1258466 1 NC_006370.1 oligopeptide transporter ATP-binding component 1258466 oppD 3122891 oppD Photobacterium profundum SS9 oligopeptide transporter ATP-binding component YP_129347.1 1257501 D 298386 CDS YP_129348.1 54308328 3124365 1258466..1259455 1 NC_006370.1 oligopeptide ABC transporter,ATP-binding protein 1259455 3124365 PBPRA1135 Photobacterium profundum SS9 oligopeptide ABC transporter,ATP-binding protein YP_129348.1 1258466 D 298386 CDS YP_129349.1 54308329 3121965 1259891..1262026 1 NC_006370.1 methyl-accepting chemotaxis protein 1262026 3121965 PBPRA1136 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_129349.1 1259891 D 298386 CDS YP_129350.1 54308330 3123384 complement(1262100..1263581) 1 NC_006370.1 hypothetical protein 1263581 3123384 PBPRA1137 Photobacterium profundum SS9 hypothetical protein YP_129350.1 1262100 R 298386 CDS YP_129351.1 54308331 3123782 complement(1263670..1265298) 1 NC_006370.1 hypothetical protein 1265298 3123782 PBPRA1138 Photobacterium profundum SS9 hypothetical protein YP_129351.1 1263670 R 298386 CDS YP_129352.1 54308332 3125003 complement(1265549..1266688) 1 NC_006370.1 hypothetical protein 1266688 3125003 PBPRA1139 Photobacterium profundum SS9 hypothetical protein YP_129352.1 1265549 R 298386 CDS YP_129353.1 54308333 3125129 1267251..1277450 1 NC_006370.1 hypothetical protein 1277450 3125129 PBPRA1140 Photobacterium profundum SS9 hypothetical protein YP_129353.1 1267251 D 298386 CDS YP_129354.1 54308334 3125222 1277549..1281046 1 NC_006370.1 hypothetical protein 1281046 3125222 PBPRA1141 Photobacterium profundum SS9 hypothetical protein YP_129354.1 1277549 D 298386 CDS YP_129355.1 54308335 3122376 1281088..1281594 1 NC_006370.1 hypothetical protein 1281594 3122376 PBPRA1142 Photobacterium profundum SS9 hypothetical protein YP_129355.1 1281088 D 298386 CDS YP_129356.1 54308336 3123970 complement(1281707..1282852) 1 NC_006370.1 catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase; nitric oxide reductase 1282852 3123970 PBPRA1143 Photobacterium profundum SS9 nitric oxide reductase YP_129356.1 1281707 R 298386 CDS YP_129357.1 54308337 3122141 complement(1282862..1284406) 1 NC_006370.1 detoxifies nitric oxide using NADH; anaerobic nitric oxide reductase flavorubredoxin 1284406 3122141 PBPRA1144 Photobacterium profundum SS9 anaerobic nitric oxide reductase flavorubredoxin YP_129357.1 1282862 R 298386 CDS YP_129358.1 54308338 3124082 complement(1284662..1286029) 1 NC_006370.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1286029 3124082 PBPRA1145 Photobacterium profundum SS9 adenylosuccinate lyase YP_129358.1 1284662 R 298386 CDS YP_129359.1 54308339 3124370 complement(1286115..1286732) 1 NC_006370.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 1286732 3124370 PBPRA1146 Photobacterium profundum SS9 hypothetical protein YP_129359.1 1286115 R 298386 CDS YP_129360.2 161936317 3124187 complement(1286747..1287862) 1 NC_006370.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 1287862 mnmA 3124187 mnmA Photobacterium profundum SS9 tRNA-specific 2-thiouridylase MnmA YP_129360.2 1286747 R 298386 CDS YP_129361.1 54308341 3123969 complement(1288206..1288856) 1 NC_006370.1 pseudouridine synthase 1288856 3123969 PBPRA1148 Photobacterium profundum SS9 pseudouridine synthase YP_129361.1 1288206 R 298386 CDS YP_129362.1 54308342 3123732 1288997..1290250 1 NC_006370.1 Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 1290250 3123732 PBPRA1149 Photobacterium profundum SS9 isocitrate dehydrogenase YP_129362.1 1288997 D 298386 CDS YP_129363.1 54308343 3123686 complement(1291013..1291234) 1 NC_006370.1 cold shock-like protein CspD 1291234 3123686 PBPRA1150 Photobacterium profundum SS9 cold shock-like protein CspD YP_129363.1 1291013 R 298386 CDS YP_129364.1 54308344 3123830 1291460..1291780 1 NC_006370.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 1291780 clpS 3123830 clpS Photobacterium profundum SS9 ATP-dependent Clp protease adaptor protein ClpS YP_129364.1 1291460 D 298386 CDS YP_129365.1 54308345 3124761 1291826..1294096 1 NC_006370.1 ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; ATP-dependent Clp protease ATP-binding subunit 1294096 clpA 3124761 clpA Photobacterium profundum SS9 ATP-dependent Clp protease ATP-binding subunit YP_129365.1 1291826 D 298386 CDS YP_129366.1 54308346 3122100 complement(1294259..1294477) 1 NC_006370.1 initiation factor IF-1 1294477 3122100 PBPRA1153 Photobacterium profundum SS9 initiation factor IF-1 YP_129366.1 1294259 R 298386 CDS YP_129367.1 54308347 3125217 complement(1294697..1295386) 1 NC_006370.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 1295386 3125217 PBPRA1154 Photobacterium profundum SS9 arginyl-tRNA-protein transferase YP_129367.1 1294697 R 298386 CDS YP_129368.1 54308348 3125263 complement(1295395..1296117) 1 NC_006370.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 1296117 aat 3125263 aat Photobacterium profundum SS9 leucyl/phenylalanyl-tRNA--protein transferase YP_129368.1 1295395 R 298386 CDS YP_129369.1 54308349 3123074 1296188..1296646 1 NC_006370.1 outer membrane lipoprotein 1296646 3123074 PBPRA1156 Photobacterium profundum SS9 outer membrane lipoprotein YP_129369.1 1296188 D 298386 CDS YP_129370.2 161936316 3123389 complement(1296767..1298488) 1 NC_006370.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding component 1298488 3123389 PBPRA1157 Photobacterium profundum SS9 cysteine/glutathione ABC transporter membrane/ATP-binding component YP_129370.2 1296767 R 298386 CDS YP_129371.1 54308351 3124148 complement(1298481..1300253) 1 NC_006370.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding component 1300253 3124148 PBPRA1158 Photobacterium profundum SS9 cysteine/glutathione ABC transporter membrane/ATP-binding component YP_129371.1 1298481 R 298386 CDS YP_129372.1 54308352 3121941 complement(1300353..1301315) 1 NC_006370.1 thioredoxin reductase 1301315 3121941 PBPRA1159 Photobacterium profundum SS9 thioredoxin reductase YP_129372.1 1300353 R 298386 CDS YP_129373.1 54308353 3124062 complement(1301936..1303057) 1 NC_006370.1 alanine dehydrogenase 1303057 3124062 PBPRA1160 Photobacterium profundum SS9 alanine dehydrogenase YP_129373.1 1301936 R 298386 CDS YP_129374.2 161936315 3122339 1303215..1303709 1 NC_006370.1 mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 1303709 3122339 PBPRA1161 Photobacterium profundum SS9 leucine-responsive transcriptional regulator YP_129374.2 1303215 D 298386 CDS YP_129375.1 54308355 3124844 1304187..1307450 1 NC_006370.1 DNA translocase FtsK 1307450 3124844 PBPRA1162 Photobacterium profundum SS9 DNA translocase FtsK YP_129375.1 1304187 D 298386 CDS YP_129376.1 54308356 3123791 1307528..1308130 1 NC_006370.1 participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 1308130 lolA 3123791 lolA Photobacterium profundum SS9 outer-membrane lipoprotein carrier protein YP_129376.1 1307528 D 298386 CDS YP_129377.1 54308357 3123555 1308251..1309591 1 NC_006370.1 recombination factor protein RarA 1309591 3123555 PBPRA1164 Photobacterium profundum SS9 recombination factor protein RarA YP_129377.1 1308251 D 298386 CDS YP_129378.1 54308358 3124937 1309717..1311009 1 NC_006370.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1311009 3124937 PBPRA1165 Photobacterium profundum SS9 seryl-tRNA synthetase YP_129378.1 1309717 D 298386 CDS YP_129379.1 54308359 3123296 complement(1311089..1311955) 1 NC_006370.1 hypothetical protein 1311955 3123296 PBPRA1166 Photobacterium profundum SS9 hypothetical protein YP_129379.1 1311089 R 298386 CDS YP_129380.1 54308360 3123063 complement(1312201..1313514) 1 NC_006370.1 proton/glutamate symporter 1313514 3123063 PBPRA1167 Photobacterium profundum SS9 proton/glutamate symporter YP_129380.1 1312201 R 298386 CDS YP_129381.1 54308361 3123543 complement(1314092..1316134) 1 NC_006370.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 1316134 metG 3123543 metG Photobacterium profundum SS9 methionyl-tRNA synthetase YP_129381.1 1314092 R 298386 CDS YP_129382.1 54308362 3124290 1316413..1317489 1 NC_006370.1 ATP-binding protein 1317489 3124290 PBPRA1169 Photobacterium profundum SS9 ATP-binding protein YP_129382.1 1316413 D 298386 CDS YP_129383.1 54308363 3125421 1317551..1318297 1 NC_006370.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 1318297 3125421 PBPRA1170 Photobacterium profundum SS9 uridine kinase YP_129383.1 1317551 D 298386 CDS YP_129384.1 54308364 3123672 complement(1318597..1319076) 1 NC_006370.1 hypothetical protein 1319076 3123672 PBPRA1171 Photobacterium profundum SS9 hypothetical protein YP_129384.1 1318597 R 298386 CDS YP_129385.1 54308365 3123568 1319667..1321436 1 NC_006370.1 AsmA protein 1321436 3123568 PBPRA1172 Photobacterium profundum SS9 AsmA protein YP_129385.1 1319667 D 298386 CDS YP_129386.1 54308366 3123465 1321481..1321813 1 NC_006370.1 AsmA family protein 1321813 3123465 PBPRA1173 Photobacterium profundum SS9 AsmA family protein YP_129386.1 1321481 D 298386 CDS YP_129387.1 54308367 3123443 1322085..1323011 1 NC_006370.1 hypothetical protein 1323011 3123443 PBPRA1174 Photobacterium profundum SS9 hypothetical protein YP_129387.1 1322085 D 298386 CDS YP_129388.1 54308368 3124067 complement(1323093..1323551) 1 NC_006370.1 hypothetical protein 1323551 3124067 PBPRA1175 Photobacterium profundum SS9 hypothetical protein YP_129388.1 1323093 R 298386 CDS YP_129389.1 54308369 3124723 complement(1323757..1324080) 1 NC_006370.1 hypothetical protein 1324080 3124723 PBPRA1176 Photobacterium profundum SS9 hypothetical protein YP_129389.1 1323757 R 298386 CDS YP_129390.1 54308370 3123767 1324349..1325389 1 NC_006370.1 hypothetical protein 1325389 3123767 PBPRA1177 Photobacterium profundum SS9 hypothetical protein YP_129390.1 1324349 D 298386 CDS YP_129391.1 54308371 3124119 1325752..1327077 1 NC_006370.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter 1327077 3124119 PBPRA1178 Photobacterium profundum SS9 anaerobic C4-dicarboxylate transporter YP_129391.1 1325752 D 298386 CDS YP_129392.1 54308372 3123435 complement(1327187..1327621) 1 NC_006370.1 hypothetical protein 1327621 3123435 PBPRA1179 Photobacterium profundum SS9 hypothetical protein YP_129392.1 1327187 R 298386 CDS YP_129393.1 54308373 3123922 complement(1328060..1328665) 1 NC_006370.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 1328665 3123922 PBPRA1180 Photobacterium profundum SS9 cob(I)yrinic acid a,c-diamide adenosyltransferase YP_129393.1 1328060 R 298386 CDS YP_129394.1 54308374 3123218 complement(1328702..1329538) 1 NC_006370.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 1329538 cobS 3123218 cobS Photobacterium profundum SS9 cobalamin synthase YP_129394.1 1328702 R 298386 CDS YP_129395.1 54308375 3122997 complement(1329535..1330563) 1 NC_006370.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1330563 cobT 3122997 cobT Photobacterium profundum SS9 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_129395.1 1329535 R 298386 CDS YP_129396.1 54308376 3124064 1330905..1331489 1 NC_006370.1 hypothetical protein 1331489 3124064 PBPRA1183 Photobacterium profundum SS9 hypothetical protein YP_129396.1 1330905 D 298386 CDS YP_129397.1 54308377 3124005 1331682..1332167 1 NC_006370.1 phosphotyrosine protein phosphatase 1332167 3124005 PBPRA1184 Photobacterium profundum SS9 phosphotyrosine protein phosphatase YP_129397.1 1331682 D 298386 CDS YP_129398.1 54308378 3122907 complement(1332310..1333869) 1 NC_006370.1 sulfate permease family protein 1333869 3122907 PBPRA1185 Photobacterium profundum SS9 sulfate permease family protein YP_129398.1 1332310 R 298386 CDS YP_129399.1 54308379 3123520 complement(1334103..1337405) 1 NC_006370.1 ribonuclease E 1337405 3123520 PBPRA1186 Photobacterium profundum SS9 ribonuclease E YP_129399.1 1334103 R 298386 CDS YP_129400.1 54308380 3122704 1337865..1338788 1 NC_006370.1 23S rRNA ribosomal pseudouridinesynthase 1338788 3122704 PBPRA1187 Photobacterium profundum SS9 23S rRNA ribosomal pseudouridinesynthase YP_129400.1 1337865 D 298386 CDS YP_129401.1 54308381 3123772 1338856..1339521 1 NC_006370.1 hydrolase haloacid dehalogenase-likefamily 1339521 3123772 PBPRA1188 Photobacterium profundum SS9 hydrolase haloacid dehalogenase-likefamily YP_129401.1 1338856 D 298386 CDS YP_129402.1 54308382 3124089 complement(1339655..1340266) 1 NC_006370.1 Maf-like protein 1340266 3124089 PBPRA1189 Photobacterium profundum SS9 Maf-like protein YP_129402.1 1339655 R 298386 CDS YP_129403.1 54308383 3122859 1340601..1341116 1 NC_006370.1 hypothetical protein 1341116 3122859 PBPRA1190 Photobacterium profundum SS9 hypothetical protein YP_129403.1 1340601 D 298386 CDS YP_129404.1 54308384 3124161 1341142..1341312 1 NC_006370.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1341312 rpmF 3124161 rpmF Photobacterium profundum SS9 50S ribosomal protein L32 YP_129404.1 1341142 D 298386 CDS YP_129405.1 54308385 3124141 1341322..1342347 1 NC_006370.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 1342347 3124141 PBPRA1192 Photobacterium profundum SS9 glycerol-3-phosphate acyltransferase PlsX YP_129405.1 1341322 D 298386 CDS YP_129406.1 54308386 3124331 1342353..1343309 1 NC_006370.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1343309 3124331 PBPRA1193 Photobacterium profundum SS9 3-oxoacyl-ACP synthase YP_129406.1 1342353 D 298386 CDS YP_129407.1 54308387 3124271 1343461..1344384 1 NC_006370.1 ACP S-malonyltransferase 1344384 3124271 PBPRA1194 Photobacterium profundum SS9 ACP S-malonyltransferase YP_129407.1 1343461 D 298386 CDS YP_129408.1 54308388 3124300 1344408..1345142 1 NC_006370.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1345142 fabG 3124300 fabG Photobacterium profundum SS9 3-ketoacyl-ACP reductase YP_129408.1 1344408 D 298386 CDS YP_129409.1 54308389 3124440 1345302..1345538 1 NC_006370.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1345538 acpP 3124440 acpP Photobacterium profundum SS9 acyl carrier protein YP_129409.1 1345302 D 298386 CDS YP_129410.1 54308390 3124686 1345623..1346864 1 NC_006370.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 1346864 3124686 PBPRA1197 Photobacterium profundum SS9 3-oxoacyl-ACP synthase YP_129410.1 1345623 D 298386 CDS YP_129411.1 54308391 3124741 1346997..1347806 1 NC_006370.1 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 1347806 3124741 PBPRA1198 Photobacterium profundum SS9 4-amino-4-deoxychorismate lyase YP_129411.1 1346997 D 298386 CDS YP_129412.1 54308392 3123054 1347800..1348813 1 NC_006370.1 hypothetical protein 1348813 3123054 PBPRA1199 Photobacterium profundum SS9 hypothetical protein YP_129412.1 1347800 D 298386 CDS YP_129413.1 54308393 3124240 1348813..1349442 1 NC_006370.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1349442 tmk 3124240 tmk Photobacterium profundum SS9 thymidylate kinase YP_129413.1 1348813 D 298386 CDS YP_129414.1 54308394 3124504 1349505..1350419 1 NC_006370.1 DNA polymerase III subunit delta' 1350419 3124504 PBPRA1201 Photobacterium profundum SS9 DNA polymerase III subunit delta' YP_129414.1 1349505 D 298386 CDS YP_129415.1 54308395 3124299 1350394..1351185 1 NC_006370.1 deoxyribonuclease 1351185 3124299 PBPRA1202 Photobacterium profundum SS9 deoxyribonuclease YP_129415.1 1350394 D 298386 CDS YP_129416.1 54308396 3125408 1351645..1353078 1 NC_006370.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucose-specific transporter subunits IIBC 1353078 3125408 PBPRA1203 Photobacterium profundum SS9 PTS system glucose-specific transporter subunits IIBC YP_129416.1 1351645 D 298386 CDS YP_129417.1 54308397 3124431 complement(1353298..1354203) 1 NC_006370.1 hypothetical protein 1354203 3124431 PBPRA1204 Photobacterium profundum SS9 hypothetical protein YP_129417.1 1353298 R 298386 CDS YP_129418.1 54308398 3124242 complement(1354616..1355539) 1 NC_006370.1 hypothetical protein 1355539 3124242 PBPRA1205 Photobacterium profundum SS9 hypothetical protein YP_129418.1 1354616 R 298386 CDS YP_129419.1 54308399 3124285 complement(1355680..1356264) 1 NC_006370.1 hypothetical protein 1356264 3124285 PBPRA1206 Photobacterium profundum SS9 hypothetical protein YP_129419.1 1355680 R 298386 CDS YP_129420.1 54308400 3124143 1356556..1357143 1 NC_006370.1 hypothetical protein 1357143 3124143 PBPRA1207 Photobacterium profundum SS9 hypothetical protein YP_129420.1 1356556 D 298386 CDS YP_129421.1 54308401 3124024 1357241..1358155 1 NC_006370.1 regulates the synthesis and expression of the dsdXA operon and dadA gene; DNA-binding transcriptional regulator DsdC 1358155 3124024 PBPRA1208 Photobacterium profundum SS9 DNA-binding transcriptional regulator DsdC YP_129421.1 1357241 D 298386 CDS YP_129422.1 54308402 3124072 complement(1358290..1358832) 1 NC_006370.1 hypothetical protein 1358832 3124072 PBPRA1209 Photobacterium profundum SS9 hypothetical protein YP_129422.1 1358290 R 298386 CDS YP_129423.1 54308403 3124002 complement(1359195..1360220) 1 NC_006370.1 Catalyzes the reduction of sulfopyruvate to (R)-sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate, alpha-ketoglutarate, and to a much lower extent, KHTCA, but not pyruvate. Involved in the biosynthes; D-lactate dehydrogenase 1360220 3124002 PBPRA1210 Photobacterium profundum SS9 D-lactate dehydrogenase YP_129423.1 1359195 R 298386 CDS YP_129424.1 54308404 3123620 complement(1360315..1360815) 1 NC_006370.1 response regulator 1360815 3123620 PBPRA1211 Photobacterium profundum SS9 response regulator YP_129424.1 1360315 R 298386 CDS YP_129425.1 54308405 3123590 complement(1360826..1362760) 1 NC_006370.1 response regulator 1362760 3123590 PBPRA1212 Photobacterium profundum SS9 response regulator YP_129425.1 1360826 R 298386 CDS YP_129426.1 54308406 3123750 1362937..1364247 1 NC_006370.1 hypothetical protein 1364247 3123750 PBPRA1213 Photobacterium profundum SS9 hypothetical protein YP_129426.1 1362937 D 298386 CDS YP_129427.1 54308407 3123775 1364551..1364940 1 NC_006370.1 inosine monophosphate dehydrogenase-related protein 1364940 3123775 PBPRA1214 Photobacterium profundum SS9 inosine monophosphate dehydrogenase-related protein YP_129427.1 1364551 D 298386 CDS YP_129428.1 54308408 3123076 1365220..1366569 1 NC_006370.1 MATE efflux family protein 1366569 3123076 PBPRA1215 Photobacterium profundum SS9 MATE efflux family protein YP_129428.1 1365220 D 298386 CDS YP_129429.1 54308409 3123065 1367359..1368774 1 NC_006370.1 transporter 1368774 3123065 PBPRA1216 Photobacterium profundum SS9 transporter YP_129429.1 1367359 D 298386 CDS YP_129430.1 54308410 3123096 1368798..1370123 1 NC_006370.1 sensor histidine kinase 1370123 3123096 PBPRA1217 Photobacterium profundum SS9 sensor histidine kinase YP_129430.1 1368798 D 298386 CDS YP_129431.1 54308411 3123026 1370077..1370607 1 NC_006370.1 chemotaxis protein CheY 1370607 3123026 PBPRA1218 Photobacterium profundum SS9 chemotaxis protein CheY YP_129431.1 1370077 D 298386 CDS YP_129432.1 54308412 3123718 complement(1370658..1372223) 1 NC_006370.1 hypothetical protein 1372223 3123718 PBPRA1219 Photobacterium profundum SS9 hypothetical protein YP_129432.1 1370658 R 298386 CDS YP_129433.1 54308413 3123181 1372544..1374949 1 NC_006370.1 P-type ATPase involved in the export of lead, cadmium, zinc and mercury; zinc/cadmium/mercury/lead-transporting ATPase 1374949 zntA 3123181 zntA Photobacterium profundum SS9 zinc/cadmium/mercury/lead-transporting ATPase YP_129433.1 1372544 D 298386 CDS YP_129434.1 54308414 3122276 1375343..1376110 1 NC_006370.1 catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 1376110 3122276 PBPRA1221 Photobacterium profundum SS9 uridine phosphorylase YP_129434.1 1375343 D 298386 CDS YP_129435.1 54308415 3123451 complement(1376302..1377474) 1 NC_006370.1 hypothetical protein 1377474 3123451 PBPRA1222 Photobacterium profundum SS9 hypothetical protein YP_129435.1 1376302 R 298386 CDS YP_129436.1 54308416 3123863 1377978..1378928 1 NC_006370.1 regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon; trehalose repressor 1378928 treR 3123863 treR Photobacterium profundum SS9 trehalose repressor YP_129436.1 1377978 D 298386 CDS YP_129437.1 54308417 3123391 1379158..1380600 1 NC_006370.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system trehalose(maltose)-specific transporter subunits IIBC 1380600 3123391 PBPRA1224 Photobacterium profundum SS9 PTS system trehalose(maltose)-specific transporter subunits IIBC YP_129437.1 1379158 D 298386 CDS YP_129438.1 54308418 3123430 1380685..1382367 1 NC_006370.1 trehalose-6-phosphate hydrolase 1382367 3123430 PBPRA1225 Photobacterium profundum SS9 trehalose-6-phosphate hydrolase YP_129438.1 1380685 D 298386 CDS YP_129439.1 54308419 3123221 complement(1382499..1383146) 1 NC_006370.1 hypothetical protein 1383146 3123221 PBPRA1226 Photobacterium profundum SS9 hypothetical protein YP_129439.1 1382499 R 298386 CDS YP_129440.1 54308420 3123109 complement(1383718..1385898) 1 NC_006370.1 efflux (PET) family transporter 1385898 3123109 PBPRA1227 Photobacterium profundum SS9 efflux (PET) family transporter YP_129440.1 1383718 R 298386 CDS YP_129441.1 54308421 3124156 1386239..1388323 1 NC_006370.1 catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand; DNA helicase IV 1388323 helD 3124156 helD Photobacterium profundum SS9 DNA helicase IV YP_129441.1 1386239 D 298386 CDS YP_129442.1 54308422 3123191 complement(1388438..1389430) 1 NC_006370.1 hypothetical protein 1389430 3123191 PBPRA1229 Photobacterium profundum SS9 hypothetical protein YP_129442.1 1388438 R 298386 CDS YP_129443.2 161936314 3122671 complement(1389668..1390126) 1 NC_006370.1 catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 1390126 mgsA 3122671 mgsA Photobacterium profundum SS9 methylglyoxal synthase YP_129443.2 1389668 R 298386 CDS YP_129444.1 54308424 3125017 complement(1390269..1391363) 1 NC_006370.1 periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT 1391363 3125017 PBPRA1231 Photobacterium profundum SS9 TMAO reductase system periplasmic protein TorT YP_129444.1 1390269 R 298386 CDS YP_129445.1 54308425 3122371 1391445..1394396 1 NC_006370.1 sensor protein TorS 1394396 3122371 PBPRA1232 Photobacterium profundum SS9 sensor protein TorS YP_129445.1 1391445 D 298386 CDS YP_129446.1 54308426 3124175 1394655..1396106 1 NC_006370.1 dipeptidase 1396106 3124175 PBPRA1233 Photobacterium profundum SS9 dipeptidase YP_129446.1 1394655 D 298386 CDS YP_129447.1 54308427 3122560 complement(1396176..1398263) 1 NC_006370.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 1398263 3122560 PBPRA1234 Photobacterium profundum SS9 elongation factor G YP_129447.1 1396176 R 298386 CDS YP_129448.1 54308428 3122500 complement(1398737..1399594) 1 NC_006370.1 hypothetical protein 1399594 3122500 PBPRA1235 Photobacterium profundum SS9 hypothetical protein YP_129448.1 1398737 R 298386 CDS YP_129449.1 54308429 3124316 1399676..1400173 1 NC_006370.1 hypothetical protein 1400173 3124316 PBPRA1236 Photobacterium profundum SS9 hypothetical protein YP_129449.1 1399676 D 298386 CDS YP_129450.1 54308430 3124015 1400216..1401124 1 NC_006370.1 hypothetical protein 1401124 3124015 PBPRA1237 Photobacterium profundum SS9 hypothetical protein YP_129450.1 1400216 D 298386 CDS YP_129451.1 54308431 3122711 complement(1401532..1401936) 1 NC_006370.1 transcriptional regulator 1401936 3122711 PBPRA1238 Photobacterium profundum SS9 transcriptional regulator YP_129451.1 1401532 R 298386 CDS YP_129452.1 54308432 3123022 1402031..1402939 1 NC_006370.1 oxidoreductase, aldo/keto reductase 2 1402939 3123022 PBPRA1239 Photobacterium profundum SS9 oxidoreductase, aldo/keto reductase 2 YP_129452.1 1402031 D 298386 CDS YP_129453.1 54308433 3123395 complement(1403095..1404408) 1 NC_006370.1 thiosulfate sulfur transferase 1404408 3123395 PBPRA1240 Photobacterium profundum SS9 thiosulfate sulfur transferase YP_129453.1 1403095 R 298386 CDS YP_129454.1 54308434 3124980 1404722..1405489 1 NC_006370.1 hypothetical protein 1405489 3124980 PBPRA1241 Photobacterium profundum SS9 hypothetical protein YP_129454.1 1404722 D 298386 CDS YP_129455.1 54308435 3124923 1405479..1405697 1 NC_006370.1 hypothetical protein 1405697 3124923 PBPRA1242 Photobacterium profundum SS9 hypothetical protein YP_129455.1 1405479 D 298386 CDS YP_129456.1 54308436 3124969 1406971..1408509 1 NC_006370.1 hypothetical protein 1408509 3124969 PBPRA1243 Photobacterium profundum SS9 hypothetical protein YP_129456.1 1406971 D 298386 CDS YP_129457.1 54308437 3123048 complement(1408952..1409983) 1 NC_006370.1 hypothetical protein 1409983 3123048 PBPRA1244 Photobacterium profundum SS9 hypothetical protein YP_129457.1 1408952 R 298386 CDS YP_129458.1 54308438 3125012 1410292..1410777 1 NC_006370.1 hypothetical protein 1410777 3125012 PBPRA1245 Photobacterium profundum SS9 hypothetical protein YP_129458.1 1410292 D 298386 CDS YP_129459.1 54308439 3123598 1410841..1412007 1 NC_006370.1 hypothetical protein 1412007 3123598 PBPRA1246 Photobacterium profundum SS9 hypothetical protein YP_129459.1 1410841 D 298386 CDS YP_129460.1 54308440 3123724 1412377..1413504 1 NC_006370.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 1413504 3123724 PBPRA1247 Photobacterium profundum SS9 methylcitrate synthase YP_129460.1 1412377 D 298386 CDS YP_129461.1 54308441 3122535 1413544..1414170 1 NC_006370.1 alkylated DNA repair protein 1414170 3122535 PBPRA1248 Photobacterium profundum SS9 alkylated DNA repair protein YP_129461.1 1413544 D 298386 CDS YP_129462.1 54308442 3122266 1414640..1415779 1 NC_006370.1 hypothetical protein 1415779 3122266 PBPRA1249 Photobacterium profundum SS9 hypothetical protein YP_129462.1 1414640 D 298386 CDS YP_129463.1 54308443 3123007 complement(1415876..1416490) 1 NC_006370.1 hypothetical protein 1416490 3123007 PBPRA1250 Photobacterium profundum SS9 hypothetical protein YP_129463.1 1415876 R 298386 CDS YP_129464.1 54308444 3124817 complement(1416453..1417235) 1 NC_006370.1 hypothetical protein 1417235 3124817 PBPRA1251 Photobacterium profundum SS9 hypothetical protein YP_129464.1 1416453 R 298386 CDS YP_129465.1 54308445 3125169 1417385..1418401 1 NC_006370.1 pyruvate formate lyase-activating enzyme 1418401 3125169 PBPRA1252 Photobacterium profundum SS9 pyruvate formate lyase-activating enzyme YP_129465.1 1417385 D 298386 CDS YP_129466.1 54308446 3124885 1418509..1418817 1 NC_006370.1 hypothetical protein 1418817 3124885 PBPRA1253 Photobacterium profundum SS9 hypothetical protein YP_129466.1 1418509 D 298386 CDS YP_129467.1 54308447 3125308 complement(1419133..1421055) 1 NC_006370.1 methyl-accepting chemotaxis protein 1421055 3125308 PBPRA1254 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_129467.1 1419133 R 298386 CDS YP_129468.1 54308448 3122279 complement(1421502..1421777) 1 NC_006370.1 hypothetical protein 1421777 3122279 PBPRA1255 Photobacterium profundum SS9 hypothetical protein YP_129468.1 1421502 R 298386 CDS YP_129469.1 54308449 3125416 1422613..1423284 1 NC_006370.1 hypothetical protein 1423284 3125416 PBPRA1256 Photobacterium profundum SS9 hypothetical protein YP_129469.1 1422613 D 298386 CDS YP_129470.1 54308450 3122364 1423473..1424126 1 NC_006370.1 formate-dependent nitrite reductase complex, NrfG protein 1424126 3122364 PBPRA1257 Photobacterium profundum SS9 formate-dependent nitrite reductase complex, NrfG protein YP_129470.1 1423473 D 298386 CDS YP_129471.1 54308451 3124830 complement(1424726..1426189) 1 NC_006370.1 catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 1426189 nrfA 3124830 nrfA Photobacterium profundum SS9 cytochrome c552 YP_129471.1 1424726 R 298386 CDS YP_129472.1 54308452 3122562 1426811..1427413 1 NC_006370.1 part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia; cytochrome c nitrite reductase pentaheme subunit 1427413 3122562 PBPRA1259 Photobacterium profundum SS9 cytochrome c nitrite reductase pentaheme subunit YP_129472.1 1426811 D 298386 CDS YP_129473.1 54308453 3123008 1427425..1428117 1 NC_006370.1 nitrite reductase, Fe-S protein (NrfC) 1428117 3123008 PBPRA1260 Photobacterium profundum SS9 nitrite reductase, Fe-S protein (NrfC) YP_129473.1 1427425 D 298386 CDS YP_129474.1 54308454 3125275 1428114..1429073 1 NC_006370.1 nitrate reductase, formate dependent (NrfD) 1429073 3125275 PBPRA1261 Photobacterium profundum SS9 nitrate reductase, formate dependent (NrfD) YP_129474.1 1428114 D 298386 CDS YP_129475.1 54308455 3122829 1429232..1431280 1 NC_006370.1 cytochrome c-type biogenesis protein CcmF 1431280 3122829 PBPRA1262 Photobacterium profundum SS9 cytochrome c-type biogenesis protein CcmF YP_129475.1 1429232 D 298386 CDS YP_129476.1 54308456 3123789 1431288..1431818 1 NC_006370.1 thiol:disulfide interchange protein DsbE 1431818 3123789 PBPRA1263 Photobacterium profundum SS9 thiol:disulfide interchange protein DsbE YP_129476.1 1431288 D 298386 CDS YP_129477.1 54308457 3124025 1431821..1432339 1 NC_006370.1 cytochrome c-type biogenesis protein NrfF 1432339 3124025 PBPRA1264 Photobacterium profundum SS9 cytochrome c-type biogenesis protein NrfF YP_129477.1 1431821 D 298386 CDS YP_129478.1 54308458 3124396 1432565..1434670 1 NC_006370.1 beta-lactamase 1434670 3124396 PBPRA1265 Photobacterium profundum SS9 beta-lactamase YP_129478.1 1432565 D 298386 CDS YP_129479.1 54308459 3124547 1434892..1435434 1 NC_006370.1 peptidyl-prolyl cis-trans isomerase B 1435434 3124547 PBPRA1266 Photobacterium profundum SS9 peptidyl-prolyl cis-trans isomerase B YP_129479.1 1434892 D 298386 CDS YP_129480.1 54308460 3123739 complement(1435588..1436142) 1 NC_006370.1 hypothetical protein 1436142 3123739 PBPRA1267 Photobacterium profundum SS9 hypothetical protein YP_129480.1 1435588 R 298386 CDS YP_129481.1 54308461 3123105 complement(1436831..1439251) 1 NC_006370.1 hypothetical protein 1439251 3123105 PBPRA1268 Photobacterium profundum SS9 hypothetical protein YP_129481.1 1436831 R 298386 CDS YP_129482.1 54308462 3125019 1439575..1440573 1 NC_006370.1 transposase 1440573 3125019 PBPRA1269 Photobacterium profundum SS9 transposase YP_129482.1 1439575 D 298386 CDS YP_129483.1 54308463 3124439 complement(1440774..1442048) 1 NC_006370.1 hypothetical protein 1442048 3124439 PBPRA1270 Photobacterium profundum SS9 hypothetical protein YP_129483.1 1440774 R 298386 CDS YP_129484.1 54308464 3123586 1442138..1443085 1 NC_006370.1 RpiR family transcriptional regulator 1443085 3123586 PBPRA1271 Photobacterium profundum SS9 RpiR family transcriptional regulator YP_129484.1 1442138 D 298386 CDS YP_129485.1 54308465 3123704 1443161..1444600 1 NC_006370.1 N-acyl-D-aspartate/D-glutamate deacylase 1444600 3123704 PBPRA1272 Photobacterium profundum SS9 N-acyl-D-aspartate/D-glutamate deacylase YP_129485.1 1443161 D 298386 CDS YP_129486.1 54308466 3123251 1444721..1445113 1 NC_006370.1 YjgF family translation initiation inhibitor 1445113 3123251 PBPRA1273 Photobacterium profundum SS9 YjgF family translation initiation inhibitor YP_129486.1 1444721 D 298386 CDS YP_129487.1 54308467 3124986 1445422..1446912 1 NC_006370.1 Na+/proline symporter 1446912 3124986 PBPRA1274 Photobacterium profundum SS9 Na+/proline symporter YP_129487.1 1445422 D 298386 CDS YP_129488.1 54308468 3125361 1447013..1447933 1 NC_006370.1 2-dehydro-3-deoxygluconokinase 1447933 3125361 PBPRA1275 Photobacterium profundum SS9 2-dehydro-3-deoxygluconokinase YP_129488.1 1447013 D 298386 CDS YP_129489.1 54308469 3122494 1447947..1448579 1 NC_006370.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 1448579 3122494 PBPRA1276 Photobacterium profundum SS9 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_129489.1 1447947 D 298386 CDS YP_129490.1 54308470 3124873 complement(1448696..1448941) 1 NC_006370.1 hypothetical protein 1448941 3124873 PBPRA1277 Photobacterium profundum SS9 hypothetical protein YP_129490.1 1448696 R 298386 CDS YP_129491.1 54308471 3123075 1449654..1451075 1 NC_006370.1 amino acid carrier protein 1451075 3123075 PBPRA1278 Photobacterium profundum SS9 amino acid carrier protein YP_129491.1 1449654 D 298386 CDS YP_129492.1 54308472 3123607 1452850..1453206 1 NC_006370.1 hypothetical protein 1453206 3123607 PBPRA1279 Photobacterium profundum SS9 hypothetical protein YP_129492.1 1452850 D 298386 CDS YP_129493.1 54308473 3123858 complement(1453288..1453449) 1 NC_006370.1 hypothetical protein 1453449 3123858 PBPRA1280 Photobacterium profundum SS9 hypothetical protein YP_129493.1 1453288 R 298386 CDS YP_129494.1 54308474 3122267 1453691..1454446 1 NC_006370.1 LamB/YcsF family protein 1454446 3122267 PBPRA1281 Photobacterium profundum SS9 LamB/YcsF family protein YP_129494.1 1453691 D 298386 CDS YP_129495.1 54308475 3123424 1454443..1455174 1 NC_006370.1 hypothetical protein 1455174 3123424 PBPRA1282 Photobacterium profundum SS9 hypothetical protein YP_129495.1 1454443 D 298386 CDS YP_129496.1 54308476 3123002 1455156..1456109 1 NC_006370.1 allophanate hydrolase subunit 2 1456109 3123002 PBPRA1283 Photobacterium profundum SS9 allophanate hydrolase subunit 2 YP_129496.1 1455156 D 298386 CDS YP_129497.1 54308477 3122493 1456138..1456710 1 NC_006370.1 hypothetical protein 1456710 3122493 PBPRA1284 Photobacterium profundum SS9 hypothetical protein YP_129497.1 1456138 D 298386 CDS YP_129498.1 54308478 3124291 1456769..1457020 1 NC_006370.1 hypothetical protein 1457020 3124291 PBPRA1285 Photobacterium profundum SS9 hypothetical protein YP_129498.1 1456769 D 298386 CDS YP_129499.1 54308479 3124262 complement(1457142..1457906) 1 NC_006370.1 hypothetical protein 1457906 3124262 PBPRA1286 Photobacterium profundum SS9 hypothetical protein YP_129499.1 1457142 R 298386 CDS YP_129500.1 54308480 3122530 complement(1458124..1459671) 1 NC_006370.1 long-chain-fatty acid-CoAligase 1459671 3122530 PBPRA1287 Photobacterium profundum SS9 long-chain-fatty acid-CoAligase YP_129500.1 1458124 R 298386 CDS YP_129501.1 54308481 3123134 1460682..1461116 1 NC_006370.1 hypothetical protein 1461116 3123134 PBPRA1288 Photobacterium profundum SS9 hypothetical protein YP_129501.1 1460682 D 298386 CDS YP_129502.1 54308482 3123303 1461116..1461562 1 NC_006370.1 hypothetical protein 1461562 3123303 PBPRA1289 Photobacterium profundum SS9 hypothetical protein YP_129502.1 1461116 D 298386 CDS YP_129503.1 54308483 3122854 1461851..1462324 1 NC_006370.1 hypothetical protein 1462324 3122854 PBPRA1290 Photobacterium profundum SS9 hypothetical protein YP_129503.1 1461851 D 298386 CDS YP_129504.1 54308484 3122688 complement(1462408..1463184) 1 NC_006370.1 pirin 1463184 3122688 PBPRA1291 Photobacterium profundum SS9 pirin YP_129504.1 1462408 R 298386 CDS YP_129505.1 54308485 3124519 complement(1463513..1464937) 1 NC_006370.1 alpha-amylase 1464937 3124519 PBPRA1292 Photobacterium profundum SS9 alpha-amylase YP_129505.1 1463513 R 298386 CDS YP_129506.1 54308486 3123175 1465223..1466740 1 NC_006370.1 hypothetical protein 1466740 3123175 PBPRA1293 Photobacterium profundum SS9 hypothetical protein YP_129506.1 1465223 D 298386 CDS YP_129507.1 54308487 3123469 1466882..1469953 1 NC_006370.1 Fe-S oxidoreductase 1469953 3123469 PBPRA1294 Photobacterium profundum SS9 Fe-S oxidoreductase YP_129507.1 1466882 D 298386 CDS YP_129508.1 54308488 3124098 complement(1470067..1470825) 1 NC_006370.1 porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure; aquaporin Z 1470825 3124098 PBPRA1295 Photobacterium profundum SS9 aquaporin Z YP_129508.1 1470067 R 298386 CDS YP_129509.1 54308489 3123768 complement(1471194..1472102) 1 NC_006370.1 transcriptional regulator 1472102 3123768 PBPRA1296 Photobacterium profundum SS9 transcriptional regulator YP_129509.1 1471194 R 298386 CDS YP_129510.1 54308490 3123250 1472257..1472958 1 NC_006370.1 cation efflux system protein 1472958 3123250 PBPRA1297 Photobacterium profundum SS9 cation efflux system protein YP_129510.1 1472257 D 298386 CDS YP_129511.1 54308491 3124803 complement(1473082..1473561) 1 NC_006370.1 hypothetical protein 1473561 3124803 PBPRA1298 Photobacterium profundum SS9 hypothetical protein YP_129511.1 1473082 R 298386 CDS YP_129512.1 54308492 3123521 complement(1473687..1473938) 1 NC_006370.1 CG2 omega domain-containing protein 1473938 3123521 PBPRA1299 Photobacterium profundum SS9 CG2 omega domain-containing protein YP_129512.1 1473687 R 298386 CDS YP_129513.1 54308493 3124133 1474129..1474869 1 NC_006370.1 hypothetical protein 1474869 3124133 PBPRA1300 Photobacterium profundum SS9 hypothetical protein YP_129513.1 1474129 D 298386 CDS YP_129514.1 54308494 3123867 complement(1475306..1476301) 1 NC_006370.1 outer membrane phospholipase A precursor 1476301 3123867 PBPRA1301 Photobacterium profundum SS9 outer membrane phospholipase A precursor YP_129514.1 1475306 R 298386 CDS YP_129515.1 54308495 3123524 complement(1476412..1478811) 1 NC_006370.1 hypothetical protein 1478811 3123524 PBPRA1302 Photobacterium profundum SS9 hypothetical protein YP_129515.1 1476412 R 298386 CDS YP_129516.1 54308496 3123295 complement(1478816..1480051) 1 NC_006370.1 prophage CP-933V integrase 1480051 3123295 PBPRA1303 Photobacterium profundum SS9 prophage CP-933V integrase YP_129516.1 1478816 R 298386 CDS YP_129517.1 54308497 3123158 complement(1480063..1480320) 1 NC_006370.1 hypothetical protein 1480320 3123158 PBPRA1304 Photobacterium profundum SS9 hypothetical protein YP_129517.1 1480063 R 298386 CDS YP_129518.1 54308498 3125318 complement(1480364..1480678) 1 NC_006370.1 hypothetical protein 1480678 3125318 PBPRA1305 Photobacterium profundum SS9 hypothetical protein YP_129518.1 1480364 R 298386 CDS YP_129519.1 54308499 3123627 complement(1480915..1481700) 1 NC_006370.1 hypothetical protein 1481700 3123627 PBPRA1306 Photobacterium profundum SS9 hypothetical protein YP_129519.1 1480915 R 298386 CDS YP_129520.1 54308500 3123719 complement(1482132..1482461) 1 NC_006370.1 hypothetical protein 1482461 3123719 PBPRA1307 Photobacterium profundum SS9 hypothetical protein YP_129520.1 1482132 R 298386 CDS YP_129521.1 54308501 3124247 1482641..1482997 1 NC_006370.1 hypothetical protein 1482997 3124247 PBPRA1308 Photobacterium profundum SS9 hypothetical protein YP_129521.1 1482641 D 298386 CDS YP_129522.1 54308502 3123624 1483004..1483882 1 NC_006370.1 hypothetical protein 1483882 3123624 PBPRA1309 Photobacterium profundum SS9 hypothetical protein YP_129522.1 1483004 D 298386 CDS YP_129523.1 54308503 3124465 1483955..1485310 1 NC_006370.1 bacteriophage replication protein P 1485310 3124465 PBPRA1310 Photobacterium profundum SS9 bacteriophage replication protein P YP_129523.1 1483955 D 298386 CDS YP_129524.1 54308504 3124767 1485575..1485835 1 NC_006370.1 hypothetical protein 1485835 3124767 PBPRA1311 Photobacterium profundum SS9 hypothetical protein YP_129524.1 1485575 D 298386 CDS YP_129525.1 54308505 3122023 complement(1485946..1486320) 1 NC_006370.1 hypothetical protein 1486320 3122023 PBPRA1312 Photobacterium profundum SS9 hypothetical protein YP_129525.1 1485946 R 298386 CDS YP_129526.1 54308506 3125367 complement(1486722..1487756) 1 NC_006370.1 hypothetical protein 1487756 3125367 PBPRA1313 Photobacterium profundum SS9 hypothetical protein YP_129526.1 1486722 R 298386 CDS YP_129527.1 54308507 3123746 complement(1487854..1488699) 1 NC_006370.1 hypothetical protein 1488699 3123746 PBPRA1314 Photobacterium profundum SS9 hypothetical protein YP_129527.1 1487854 R 298386 CDS YP_129528.1 54308508 3124406 1489240..1489482 1 NC_006370.1 hypothetical protein 1489482 3124406 PBPRA1315 Photobacterium profundum SS9 hypothetical protein YP_129528.1 1489240 D 298386 CDS YP_129529.1 54308509 3122632 1489490..1490284 1 NC_006370.1 hypothetical protein 1490284 3122632 PBPRA1316 Photobacterium profundum SS9 hypothetical protein YP_129529.1 1489490 D 298386 CDS YP_129530.1 54308510 3122004 1490498..1491517 1 NC_006370.1 hypothetical protein 1491517 3122004 PBPRA1317 Photobacterium profundum SS9 hypothetical protein YP_129530.1 1490498 D 298386 CDS YP_129531.1 54308511 3122106 complement(1492518..1494062) 1 NC_006370.1 hypotethical transposase 1494062 3122106 PBPRA1318 Photobacterium profundum SS9 hypotethical transposase YP_129531.1 1492518 R 298386 CDS YP_129532.1 54308512 3122232 complement(1494171..1494518) 1 NC_006370.1 hypothetical protein 1494518 3122232 PBPRA1319 Photobacterium profundum SS9 hypothetical protein YP_129532.1 1494171 R 298386 CDS YP_129533.1 54308513 3121964 complement(1494518..1494814) 1 NC_006370.1 hypothetical protein 1494814 3121964 PBPRA1320 Photobacterium profundum SS9 hypothetical protein YP_129533.1 1494518 R 298386 CDS YP_129534.1 54308514 3123496 1494876..1495145 1 NC_006370.1 hypothetical protein 1495145 3123496 PBPRA1321 Photobacterium profundum SS9 hypothetical protein YP_129534.1 1494876 D 298386 CDS YP_129535.1 54308515 3122378 1495306..1495557 1 NC_006370.1 hypothetical protein 1495557 3122378 PBPRA1322 Photobacterium profundum SS9 hypothetical protein YP_129535.1 1495306 D 298386 CDS YP_129536.1 54308516 3122218 complement(1495657..1496862) 1 NC_006370.1 hypothetical protein 1496862 3122218 PBPRA1323 Photobacterium profundum SS9 hypothetical protein YP_129536.1 1495657 R 298386 CDS YP_129537.1 54308517 3124530 complement(1496866..1497171) 1 NC_006370.1 hypothetical protein 1497171 3124530 PBPRA1324 Photobacterium profundum SS9 hypothetical protein YP_129537.1 1496866 R 298386 CDS YP_129538.1 54308518 3122238 1497265..1498545 1 NC_006370.1 hypothetical protein 1498545 3122238 PBPRA1325 Photobacterium profundum SS9 hypothetical protein YP_129538.1 1497265 D 298386 CDS YP_129539.1 54308519 3122498 complement(1498550..1498927) 1 NC_006370.1 hypothetical protein 1498927 3122498 PBPRA1326 Photobacterium profundum SS9 hypothetical protein YP_129539.1 1498550 R 298386 CDS YP_129540.1 54308520 3122589 1499293..1499556 1 NC_006370.1 hypothetical protein 1499556 3122589 PBPRA1327 Photobacterium profundum SS9 hypothetical protein YP_129540.1 1499293 D 298386 CDS YP_129541.1 54308521 3122350 1500094..1500444 1 NC_006370.1 hypothetical protein 1500444 3122350 PBPRA1328 Photobacterium profundum SS9 hypothetical protein YP_129541.1 1500094 D 298386 CDS YP_129542.1 54308522 3122193 1500790..1501041 1 NC_006370.1 hypothetical protein 1501041 3122193 PBPRA1329 Photobacterium profundum SS9 hypothetical protein YP_129542.1 1500790 D 298386 CDS YP_129543.1 54308523 3122813 1501082..1501642 1 NC_006370.1 hypothetical protein 1501642 3122813 PBPRA1330 Photobacterium profundum SS9 hypothetical protein YP_129543.1 1501082 D 298386 CDS YP_129544.1 54308524 3124512 1501639..1502115 1 NC_006370.1 hypothetical protein 1502115 3124512 PBPRA1331 Photobacterium profundum SS9 hypothetical protein YP_129544.1 1501639 D 298386 CDS YP_129545.1 54308525 3123762 1502598..1503158 1 NC_006370.1 hypothetical protein 1503158 3123762 PBPRA1332 Photobacterium profundum SS9 hypothetical protein YP_129545.1 1502598 D 298386 CDS YP_129546.1 54308526 3124165 1503713..1504993 1 NC_006370.1 hypothetical protein 1504993 3124165 PBPRA1333 Photobacterium profundum SS9 hypothetical protein YP_129546.1 1503713 D 298386 CDS YP_129547.1 54308527 3124528 1505088..1505711 1 NC_006370.1 hypothetical protein 1505711 3124528 PBPRA1334 Photobacterium profundum SS9 hypothetical protein YP_129547.1 1505088 D 298386 CDS YP_129548.1 54308528 3124915 complement(1505989..1507041) 1 NC_006370.1 IS91 family transposase 1507041 3124915 PBPRA1335 Photobacterium profundum SS9 IS91 family transposase YP_129548.1 1505989 R 298386 CDS YP_129549.1 54308529 3122815 complement(1507038..1507925) 1 NC_006370.1 integrase 1507925 3122815 PBPRA1336 Photobacterium profundum SS9 integrase YP_129549.1 1507038 R 298386 CDS YP_129550.1 54308530 3122079 complement(1508327..1508803) 1 NC_006370.1 hypothetical protein 1508803 3122079 PBPRA1337 Photobacterium profundum SS9 hypothetical protein YP_129550.1 1508327 R 298386 CDS YP_129551.1 54308531 3125268 complement(1508922..1509374) 1 NC_006370.1 hypothetical protein 1509374 3125268 PBPRA1338 Photobacterium profundum SS9 hypothetical protein YP_129551.1 1508922 R 298386 CDS YP_129552.1 54308532 3122021 1510278..1510574 1 NC_006370.1 hypothetical protein 1510574 3122021 PBPRA1339 Photobacterium profundum SS9 hypothetical protein YP_129552.1 1510278 D 298386 CDS YP_129553.1 54308533 3125134 1510574..1510921 1 NC_006370.1 hypothetical protein 1510921 3125134 PBPRA1340 Photobacterium profundum SS9 hypothetical protein YP_129553.1 1510574 D 298386 CDS YP_129554.1 54308534 3123754 1511042..1512574 1 NC_006370.1 transposase 1512574 3123754 PBPRA1341 Photobacterium profundum SS9 transposase YP_129554.1 1511042 D 298386 CDS YP_129555.1 54308535 3122036 1512703..1512957 1 NC_006370.1 hypothetical protein 1512957 3122036 PBPRA1342 Photobacterium profundum SS9 hypothetical protein YP_129555.1 1512703 D 298386 CDS YP_129556.1 54308536 3124315 1512990..1513310 1 NC_006370.1 hypothetical protein 1513310 3124315 PBPRA1343 Photobacterium profundum SS9 hypothetical protein YP_129556.1 1512990 D 298386 CDS YP_129557.1 54308537 3124814 1514094..1515536 1 NC_006370.1 tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; tryptophanase 1515536 tnaA 3124814 tnaA Photobacterium profundum SS9 tryptophanase YP_129557.1 1514094 D 298386 CDS YP_129558.1 54308538 3125394 1515579..1516868 1 NC_006370.1 tryptophan-specific transport protein 1516868 3125394 PBPRA1345 Photobacterium profundum SS9 tryptophan-specific transport protein YP_129558.1 1515579 D 298386 CDS YP_129559.1 54308539 3123532 1516880..1518019 1 NC_006370.1 hypothetical protein 1518019 3123532 PBPRA1346 Photobacterium profundum SS9 hypothetical protein YP_129559.1 1516880 D 298386 CDS YP_129560.1 54308540 3122112 1518094..1519410 1 NC_006370.1 hypothetical protein 1519410 3122112 PBPRA1347 Photobacterium profundum SS9 hypothetical protein YP_129560.1 1518094 D 298386 CDS YP_129561.1 54308541 3125118 1519573..1520790 1 NC_006370.1 hypothetical protein 1520790 3125118 PBPRA1348 Photobacterium profundum SS9 hypothetical protein YP_129561.1 1519573 D 298386 CDS YP_129562.1 54308542 3124164 1520787..1521419 1 NC_006370.1 hypothetical protein 1521419 3124164 PBPRA1349 Photobacterium profundum SS9 hypothetical protein YP_129562.1 1520787 D 298386 CDS YP_129563.1 54308543 3123888 complement(1521565..1521933) 1 NC_006370.1 biphenyl-2,3-diol 1,2-dioxygenase III-like protein 1521933 3123888 PBPRA1350 Photobacterium profundum SS9 biphenyl-2,3-diol 1,2-dioxygenase III-like protein YP_129563.1 1521565 R 298386 CDS YP_129564.1 54308544 3123012 complement(1521960..1522205) 1 NC_006370.1 hypothetical protein 1522205 3123012 PBPRA1351 Photobacterium profundum SS9 hypothetical protein YP_129564.1 1521960 R 298386 CDS YP_129565.1 54308545 3124065 1522504..1522824 1 NC_006370.1 hypothetical protein 1522824 3124065 PBPRA1352 Photobacterium profundum SS9 hypothetical protein YP_129565.1 1522504 D 298386 CDS YP_129566.1 54308546 3125151 1523060..1523425 1 NC_006370.1 hypothetical protein 1523425 3125151 PBPRA1353 Photobacterium profundum SS9 hypothetical protein YP_129566.1 1523060 D 298386 CDS YP_129567.1 54308547 3124906 1523434..1525095 1 NC_006370.1 hypothetical protein 1525095 3124906 PBPRA1354 Photobacterium profundum SS9 hypothetical protein YP_129567.1 1523434 D 298386 CDS YP_129568.1 54308548 3121980 1525096..1526394 1 NC_006370.1 phage portal protein 1526394 3121980 PBPRA1355 Photobacterium profundum SS9 phage portal protein YP_129568.1 1525096 D 298386 CDS YP_129569.1 54308549 3122507 1526357..1527160 1 NC_006370.1 protease/scaffold protein 1527160 3122507 PBPRA1356 Photobacterium profundum SS9 protease/scaffold protein YP_129569.1 1526357 D 298386 CDS YP_129570.1 54308550 3125496 1527174..1528436 1 NC_006370.1 hypothetical protein 1528436 3125496 PBPRA1357 Photobacterium profundum SS9 hypothetical protein YP_129570.1 1527174 D 298386 CDS YP_129571.1 54308551 3123669 1528663..1528980 1 NC_006370.1 hypothetical protein 1528980 3123669 PBPRA1358 Photobacterium profundum SS9 hypothetical protein YP_129571.1 1528663 D 298386 CDS YP_129572.1 54308552 3125188 1528995..1529300 1 NC_006370.1 hypothetical protein 1529300 3125188 PBPRA1359 Photobacterium profundum SS9 hypothetical protein YP_129572.1 1528995 D 298386 CDS YP_129573.1 54308553 3122991 1530440..1530790 1 NC_006370.1 hypothetical protein 1530790 3122991 PBPRA1360 Photobacterium profundum SS9 hypothetical protein YP_129573.1 1530440 D 298386 CDS YP_129574.1 54308554 3125143 1531250..1531879 1 NC_006370.1 homoserine/homoserine lactone efflux protein 1531879 3125143 PBPRA1361 Photobacterium profundum SS9 homoserine/homoserine lactone efflux protein YP_129574.1 1531250 D 298386 CDS YP_129575.1 54308555 3122949 1532346..1532816 1 NC_006370.1 transposase and inactivate derivatives 1532816 3122949 PBPRA1362 Photobacterium profundum SS9 transposase and inactivate derivatives YP_129575.1 1532346 D 298386 CDS YP_129576.1 54308556 3123052 1532818..1533381 1 NC_006370.1 transposase 1533381 3123052 PBPRA1363 Photobacterium profundum SS9 transposase YP_129576.1 1532818 D 298386 CDS YP_129577.1 54308557 3123321 1533580..1534059 1 NC_006370.1 hypothetical protein 1534059 3123321 PBPRA1364 Photobacterium profundum SS9 hypothetical protein YP_129577.1 1533580 D 298386 CDS YP_129578.1 54308558 3124208 1534156..1534443 1 NC_006370.1 hypothetical protein 1534443 3124208 PBPRA1365 Photobacterium profundum SS9 hypothetical protein YP_129578.1 1534156 D 298386 CDS YP_129579.1 54308559 3124602 complement(1534584..1535951) 1 NC_006370.1 responsible for the transport of C4-dicarboxylates during anaerobic growth; C4-dicarboxylate transporter DcuC 1535951 dcuC 3124602 dcuC Photobacterium profundum SS9 C4-dicarboxylate transporter DcuC YP_129579.1 1534584 R 298386 CDS YP_129580.1 54308560 3123446 complement(1536541..1537413) 1 NC_006370.1 LysR family transcriptional regulator 1537413 3123446 PBPRA1367 Photobacterium profundum SS9 LysR family transcriptional regulator YP_129580.1 1536541 R 298386 CDS YP_129581.1 54308561 3125292 1537425..1538771 1 NC_006370.1 multidrug resistance protein 1538771 3125292 PBPRA1368 Photobacterium profundum SS9 multidrug resistance protein YP_129581.1 1537425 D 298386 CDS YP_129582.1 54308562 3123402 complement(1538794..1540734) 1 NC_006370.1 methyl-accepting chemotaxis protein 1540734 3123402 PBPRA1369 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_129582.1 1538794 R 298386 CDS YP_129583.1 54308563 3124526 complement(1541348..1542559) 1 NC_006370.1 anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; sn-glycerol-3-phosphate dehydrogenase subunit C 1542559 glpC 3124526 glpC Photobacterium profundum SS9 sn-glycerol-3-phosphate dehydrogenase subunit C YP_129583.1 1541348 R 298386 CDS YP_129584.1 54308564 3122523 complement(1542556..1543884) 1 NC_006370.1 sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B 1543884 3122523 PBPRA1371 Photobacterium profundum SS9 anaerobic glycerol-3-phosphate dehydrogenase subunit B YP_129584.1 1542556 R 298386 CDS YP_129585.1 54308565 3124866 complement(1543881..1545581) 1 NC_006370.1 anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor; sn-glycerol-3-phosphate dehydrogenase subunit A 1545581 glpA 3124866 glpA Photobacterium profundum SS9 sn-glycerol-3-phosphate dehydrogenase subunit A YP_129585.1 1543881 R 298386 CDS YP_129586.1 54308566 3124103 complement(1545844..1546455) 1 NC_006370.1 hypothetical protein 1546455 3124103 PBPRA1373 Photobacterium profundum SS9 hypothetical protein YP_129586.1 1545844 R 298386 CDS YP_129587.1 54308567 3122393 complement(1546569..1547606) 1 NC_006370.1 hypothetical protein 1547606 3122393 PBPRA1374 Photobacterium profundum SS9 hypothetical protein YP_129587.1 1546569 R 298386 CDS YP_129588.1 54308568 3124501 complement(1547637..1548140) 1 NC_006370.1 hypothetical protein 1548140 3124501 PBPRA1375 Photobacterium profundum SS9 hypothetical protein YP_129588.1 1547637 R 298386 CDS YP_129589.1 54308569 3123847 1548409..1549080 1 NC_006370.1 hypothetical protein 1549080 3123847 PBPRA1376 Photobacterium profundum SS9 hypothetical protein YP_129589.1 1548409 D 298386 CDS YP_129590.1 54308570 3123347 1549218..1549406 1 NC_006370.1 hypothetical protein 1549406 3123347 PBPRA1377 Photobacterium profundum SS9 hypothetical protein YP_129590.1 1549218 D 298386 CDS YP_129591.1 54308571 3123313 complement(1549496..1550407) 1 NC_006370.1 transcriptional activator 1550407 3123313 PBPRA1378 Photobacterium profundum SS9 transcriptional activator YP_129591.1 1549496 R 298386 CDS YP_129592.1 54308572 3122841 1550662..1552962 1 NC_006370.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 1552962 3122841 PBPRA1379 Photobacterium profundum SS9 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase YP_129592.1 1550662 D 298386 CDS YP_129593.1 54308573 3123475 complement(1553114..1553551) 1 NC_006370.1 heat shock protein HslJ 1553551 3123475 PBPRA1380 Photobacterium profundum SS9 heat shock protein HslJ YP_129593.1 1553114 R 298386 CDS YP_129594.1 54308574 3122581 complement(1553909..1555552) 1 NC_006370.1 hypothetical protein 1555552 3122581 PBPRA1381 Photobacterium profundum SS9 hypothetical protein YP_129594.1 1553909 R 298386 CDS YP_129595.1 54308575 3124950 complement(1555974..1556351) 1 NC_006370.1 hypothetical protein 1556351 3124950 PBPRA1382 Photobacterium profundum SS9 hypothetical protein YP_129595.1 1555974 R 298386 CDS YP_129596.1 54308576 3123509 complement(1556579..1556827) 1 NC_006370.1 hypothetical protein 1556827 3123509 PBPRA1383 Photobacterium profundum SS9 hypothetical protein YP_129596.1 1556579 R 298386 CDS YP_129597.1 54308577 3122602 complement(1556911..1557624) 1 NC_006370.1 hypothetical protein 1557624 3122602 PBPRA1384 Photobacterium profundum SS9 hypothetical protein YP_129597.1 1556911 R 298386 CDS YP_129598.1 54308578 3125438 1558329..1558943 1 NC_006370.1 hypothetical protein 1558943 3125438 PBPRA1385 Photobacterium profundum SS9 hypothetical protein YP_129598.1 1558329 D 298386 CDS YP_129599.1 54308579 3122571 1559021..1559494 1 NC_006370.1 hypothetical protein 1559494 3122571 PBPRA1386 Photobacterium profundum SS9 hypothetical protein YP_129599.1 1559021 D 298386 CDS YP_129600.1 54308580 3123692 complement(1560254..1561819) 1 NC_006370.1 hypothetical protein 1561819 3123692 PBPRA1387 Photobacterium profundum SS9 hypothetical protein YP_129600.1 1560254 R 298386 CDS YP_129601.1 54308581 3125401 1562150..1562881 1 NC_006370.1 transposase 1562881 3125401 PBPRA1388 Photobacterium profundum SS9 transposase YP_129601.1 1562150 D 298386 CDS YP_129602.1 54308582 3125207 complement(1563655..1563981) 1 NC_006370.1 hypothetical protein 1563981 3125207 PBPRA1389 Photobacterium profundum SS9 hypothetical protein YP_129602.1 1563655 R 298386 CDS YP_129603.1 54308583 3125140 complement(1563983..1564483) 1 NC_006370.1 hypothetical protein 1564483 3125140 PBPRA1390 Photobacterium profundum SS9 hypothetical protein YP_129603.1 1563983 R 298386 CDS YP_129604.1 54308584 3125076 complement(1564770..1565534) 1 NC_006370.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein 1565534 3125076 PBPRA1391 Photobacterium profundum SS9 phosphate ABC transporter ATP-binding protein YP_129604.1 1564770 R 298386 CDS YP_129605.1 54308585 3125509 complement(1565538..1566428) 1 NC_006370.1 phosphate ABC transporter, permease protein 1566428 3125509 PBPRA1392 Photobacterium profundum SS9 phosphate ABC transporter, permease protein YP_129605.1 1565538 R 298386 CDS YP_129606.1 54308586 3125466 complement(1566434..1567393) 1 NC_006370.1 phosphate ABC transporter, permease protein 1567393 3125466 PBPRA1393 Photobacterium profundum SS9 phosphate ABC transporter, permease protein YP_129606.1 1566434 R 298386 CDS YP_129607.1 54308587 3123285 complement(1567490..1568314) 1 NC_006370.1 phosphate ABC transporter, periplasmicphosphate-binding protein 1568314 3123285 PBPRA1394 Photobacterium profundum SS9 phosphate ABC transporter, periplasmicphosphate-binding protein YP_129607.1 1567490 R 298386 CDS YP_129608.1 54308588 3125028 1568708..1570336 1 NC_006370.1 methyl-accepting chemotaxis protein 1570336 3125028 PBPRA1395 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_129608.1 1568708 D 298386 CDS YP_129609.1 54308589 3125041 1570554..1571453 1 NC_006370.1 LysR family transcriptional regulator 1571453 3125041 PBPRA1396 Photobacterium profundum SS9 LysR family transcriptional regulator YP_129609.1 1570554 D 298386 CDS YP_129610.1 54308590 3122588 1571720..1572937 1 NC_006370.1 NupC family protein 1572937 3122588 PBPRA1397 Photobacterium profundum SS9 NupC family protein YP_129610.1 1571720 D 298386 CDS YP_129611.1 54308591 3123145 1573572..1573850 1 NC_006370.1 hypothetical protein 1573850 3123145 PBPRA1398 Photobacterium profundum SS9 hypothetical protein YP_129611.1 1573572 D 298386 CDS YP_129612.1 54308592 3122178 complement(1574137..1574517) 1 NC_006370.1 hypothetical protein 1574517 3122178 PBPRA1399 Photobacterium profundum SS9 hypothetical protein YP_129612.1 1574137 R 298386 CDS YP_129613.1 54308593 3122074 complement(1574818..1575123) 1 NC_006370.1 hypothetical protein 1575123 3122074 PBPRA1400 Photobacterium profundum SS9 hypothetical protein YP_129613.1 1574818 R 298386 CDS YP_129614.1 54308594 3122220 1575245..1576147 1 NC_006370.1 LysR family transcriptional regulator 1576147 3122220 PBPRA1401 Photobacterium profundum SS9 LysR family transcriptional regulator YP_129614.1 1575245 D 298386 CDS YP_129615.1 54308595 3122484 1576750..1577835 1 NC_006370.1 hypothetical protein 1577835 3122484 PBPRA1402 Photobacterium profundum SS9 hypothetical protein YP_129615.1 1576750 D 298386 CDS YP_129616.1 54308596 3124170 1577902..1578468 1 NC_006370.1 permease 1578468 3124170 PBPRA1403 Photobacterium profundum SS9 permease YP_129616.1 1577902 D 298386 CDS YP_129617.1 54308597 3122298 1578465..1579844 1 NC_006370.1 C4 dicarboxylate transporter permease 1579844 3122298 PBPRA1404 Photobacterium profundum SS9 C4 dicarboxylate transporter permease YP_129617.1 1578465 D 298386 CDS YP_129618.1 54308598 3122411 1579980..1580864 1 NC_006370.1 hypothetical protein 1580864 3122411 PBPRA1405 Photobacterium profundum SS9 hypothetical protein YP_129618.1 1579980 D 298386 CDS YP_129619.1 54308599 3122043 1580967..1581566 1 NC_006370.1 hypothetical protein 1581566 3122043 PBPRA1406 Photobacterium profundum SS9 hypothetical protein YP_129619.1 1580967 D 298386 CDS YP_129620.1 54308600 3122512 complement(1581681..1584512) 1 NC_006370.1 ferredoxin 1584512 3122512 PBPRA1407 Photobacterium profundum SS9 ferredoxin YP_129620.1 1581681 R 298386 CDS YP_129621.1 54308601 3124746 complement(1584499..1585164) 1 NC_006370.1 hypothetical protein 1585164 3124746 PBPRA1408 Photobacterium profundum SS9 hypothetical protein YP_129621.1 1584499 R 298386 CDS YP_129622.1 54308602 3122810 complement(1585161..1586621) 1 NC_006370.1 (Fe-S)-binding protein 1586621 3122810 PBPRA1409 Photobacterium profundum SS9 (Fe-S)-binding protein YP_129622.1 1585161 R 298386 CDS YP_129623.1 54308603 3122702 complement(1586623..1587375) 1 NC_006370.1 hypothetical protein 1587375 3122702 PBPRA1410 Photobacterium profundum SS9 hypothetical protein YP_129623.1 1586623 R 298386 CDS YP_129624.1 54308604 3124389 complement(1587584..1589287) 1 NC_006370.1 L-lactate permease 1589287 3124389 PBPRA1411 Photobacterium profundum SS9 L-lactate permease YP_129624.1 1587584 R 298386 CDS YP_129625.1 54308605 3123600 1589515..1590417 1 NC_006370.1 LysR family transcriptional regulator 1590417 3123600 PBPRA1412 Photobacterium profundum SS9 LysR family transcriptional regulator YP_129625.1 1589515 D 298386 CDS YP_129626.1 54308606 3123641 complement(1590452..1590772) 1 NC_006370.1 hypothetical protein 1590772 3123641 PBPRA1413 Photobacterium profundum SS9 hypothetical protein YP_129626.1 1590452 R 298386 CDS YP_129627.1 54308607 3123747 complement(1590804..1591058) 1 NC_006370.1 hypothetical protein 1591058 3123747 PBPRA1414 Photobacterium profundum SS9 hypothetical protein YP_129627.1 1590804 R 298386 CDS YP_129628.1 54308608 3124038 1591158..1591511 1 NC_006370.1 hypothetical protein 1591511 3124038 PBPRA1415 Photobacterium profundum SS9 hypothetical protein YP_129628.1 1591158 D 298386 CDS YP_129629.1 54308609 3124595 complement(1591702..1592094) 1 NC_006370.1 hypothetical protein 1592094 3124595 PBPRA1416 Photobacterium profundum SS9 hypothetical protein YP_129629.1 1591702 R 298386 CDS YP_129630.1 54308610 3124596 complement(1592315..1592686) 1 NC_006370.1 hypothetical protein 1592686 3124596 PBPRA1417 Photobacterium profundum SS9 hypothetical protein YP_129630.1 1592315 R 298386 CDS YP_129631.1 54308611 3124481 complement(1592689..1592979) 1 NC_006370.1 hypothetical protein 1592979 3124481 PBPRA1418 Photobacterium profundum SS9 hypothetical protein YP_129631.1 1592689 R 298386 CDS YP_129632.1 54308612 3122705 complement(1593008..1593385) 1 NC_006370.1 hypothetical protein 1593385 3122705 PBPRA1419 Photobacterium profundum SS9 hypothetical protein YP_129632.1 1593008 R 298386 CDS YP_129633.1 54308613 3124358 complement(1593382..1594350) 1 NC_006370.1 hypothetical protein 1594350 3124358 PBPRA1420 Photobacterium profundum SS9 hypothetical protein YP_129633.1 1593382 R 298386 CDS YP_129634.1 54308614 3123990 complement(1594724..1596427) 1 NC_006370.1 NADH oxidase 1596427 3123990 PBPRA1421 Photobacterium profundum SS9 NADH oxidase YP_129634.1 1594724 R 298386 CDS YP_129635.1 54308615 3123261 1596629..1597048 1 NC_006370.1 hypothetical protein 1597048 3123261 PBPRA1422 Photobacterium profundum SS9 hypothetical protein YP_129635.1 1596629 D 298386 CDS YP_129636.1 54308616 3124727 1597062..1597499 1 NC_006370.1 hypothetical protein 1597499 3124727 PBPRA1423 Photobacterium profundum SS9 hypothetical protein YP_129636.1 1597062 D 298386 CDS YP_129637.1 54308617 3124435 complement(1597630..1597995) 1 NC_006370.1 hypothetical protein 1597995 3124435 PBPRA1424 Photobacterium profundum SS9 hypothetical protein YP_129637.1 1597630 R 298386 CDS YP_129638.1 54308618 3124638 complement(1598159..1599022) 1 NC_006370.1 uroporphyrinogen-III methylase 1599022 3124638 PBPRA1425 Photobacterium profundum SS9 uroporphyrinogen-III methylase YP_129638.1 1598159 R 298386 CDS YP_129639.1 54308619 3124393 complement(1599067..1599888) 1 NC_006370.1 member of the FNT family of formate and nitrite transporters; nitrite transporter NirC 1599888 3124393 PBPRA1426 Photobacterium profundum SS9 nitrite transporter NirC YP_129639.1 1599067 R 298386 CDS YP_129640.1 54308620 3124614 complement(1600019..1600345) 1 NC_006370.1 involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations; nitrite reductase small subunit 1600345 nirD 3124614 nirD Photobacterium profundum SS9 nitrite reductase small subunit YP_129640.1 1600019 R 298386 CDS YP_129641.1 54308621 3124346 complement(1600342..1602891) 1 NC_006370.1 nitrite reductase (NAD(P)H), large subunit 1602891 3124346 PBPRA1428 Photobacterium profundum SS9 nitrite reductase (NAD(P)H), large subunit YP_129641.1 1600342 R 298386 CDS YP_129642.1 54308622 3124049 1603259..1603561 1 NC_006370.1 hypothetical protein 1603561 3124049 PBPRA1429 Photobacterium profundum SS9 hypothetical protein YP_129642.1 1603259 D 298386 CDS YP_129643.1 54308623 3124096 1603824..1604570 1 NC_006370.1 nicotinamide mononucleotide transporter 1604570 3124096 PBPRA1430 Photobacterium profundum SS9 nicotinamide mononucleotide transporter YP_129643.1 1603824 D 298386 CDS YP_129644.1 54308624 3124476 1604570..1605325 1 NC_006370.1 uridine phosphorylase 1605325 3124476 PBPRA1431 Photobacterium profundum SS9 uridine phosphorylase YP_129644.1 1604570 D 298386 CDS YP_129645.1 54308625 3123911 1605574..1606254 1 NC_006370.1 cyclic nucleotide binding protein 1606254 3123911 PBPRA1432 Photobacterium profundum SS9 cyclic nucleotide binding protein YP_129645.1 1605574 D 298386 CDS YP_129646.1 54308626 3123912 1606795..1607973 1 NC_006370.1 tyrosine transporter 1607973 3123912 PBPRA1433 Photobacterium profundum SS9 tyrosine transporter YP_129646.1 1606795 D 298386 CDS YP_129647.1 54308627 3123923 1608530..1609333 1 NC_006370.1 Ap4A phosphorylase II 1609333 3123923 PBPRA1434 Photobacterium profundum SS9 Ap4A phosphorylase II YP_129647.1 1608530 D 298386 CDS YP_129648.1 54308628 3122034 complement(1609462..1610628) 1 NC_006370.1 hypothetical protein 1610628 3122034 PBPRA1435 Photobacterium profundum SS9 hypothetical protein YP_129648.1 1609462 R 298386 CDS YP_129649.1 54308629 3123854 complement(1610825..1611205) 1 NC_006370.1 cell wall-associated hydrolase 1611205 3123854 PBPRA1436 Photobacterium profundum SS9 cell wall-associated hydrolase YP_129649.1 1610825 R 298386 CDS YP_129650.1 54308630 3123547 complement(1611245..1612441) 1 NC_006370.1 transposase 1612441 3123547 PBPRA1437 Photobacterium profundum SS9 transposase YP_129650.1 1611245 R 298386 CDS YP_129651.1 54308631 3123616 1613157..1614344 1 NC_006370.1 hypothetical protein 1614344 3123616 PBPRA1438 Photobacterium profundum SS9 hypothetical protein YP_129651.1 1613157 D 298386 CDS YP_129652.1 54308632 3123808 1614341..1616443 1 NC_006370.1 hypothetical protein 1616443 3123808 PBPRA1439 Photobacterium profundum SS9 hypothetical protein YP_129652.1 1614341 D 298386 CDS YP_129653.1 54308633 3123773 complement(1616510..1616983) 1 NC_006370.1 TrmH family RNA methyltransferase 1616983 3123773 PBPRA1440 Photobacterium profundum SS9 TrmH family RNA methyltransferase YP_129653.1 1616510 R 298386 CDS YP_129654.1 54308634 3123566 complement(1617144..1617476) 1 NC_006370.1 hypothetical protein 1617476 3123566 PBPRA1441 Photobacterium profundum SS9 hypothetical protein YP_129654.1 1617144 R 298386 CDS YP_129655.1 54308635 3124351 1618002..1619501 1 NC_006370.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1619501 3124351 PBPRA1442 Photobacterium profundum SS9 glucose-6-phosphate 1-dehydrogenase YP_129655.1 1618002 D 298386 CDS YP_129656.1 54308636 3123781 1619504..1620220 1 NC_006370.1 catalyzes the formation of 6-phospho-D-gluconate from 6-phospho-D-glucono-1,5-lactone; 6-phosphogluconolactonase 1620220 3123781 PBPRA1443 Photobacterium profundum SS9 6-phosphogluconolactonase YP_129656.1 1619504 D 298386 CDS YP_129657.1 54308637 3123367 1620181..1621680 1 NC_006370.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 1621680 3123367 PBPRA1444 Photobacterium profundum SS9 6-phosphogluconate dehydrogenase YP_129657.1 1620181 D 298386 CDS YP_129658.1 54308638 3123319 1622096..1623769 1 NC_006370.1 sodium/alanine symporter 1623769 3123319 PBPRA1445 Photobacterium profundum SS9 sodium/alanine symporter YP_129658.1 1622096 D 298386 CDS YP_129659.1 54308639 3124410 1624077..1624562 1 NC_006370.1 lactoylglutathione lyase 1624562 3124410 PBPRA1446 Photobacterium profundum SS9 lactoylglutathione lyase YP_129659.1 1624077 D 298386 CDS YP_129660.1 54308640 3124109 1624889..1625581 1 NC_006370.1 hypothetical protein 1625581 3124109 PBPRA1447 Photobacterium profundum SS9 hypothetical protein YP_129660.1 1624889 D 298386 CDS YP_129661.1 54308641 3124874 1625630..1626502 1 NC_006370.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1626502 3124874 PBPRA1448 Photobacterium profundum SS9 formyltetrahydrofolate deformylase YP_129661.1 1625630 D 298386 CDS YP_129662.1 54308642 3124071 complement(1626757..1627518) 1 NC_006370.1 hypothetical protein 1627518 3124071 PBPRA1449 Photobacterium profundum SS9 hypothetical protein YP_129662.1 1626757 R 298386 CDS YP_129663.1 54308643 3124304 complement(1627515..1627898) 1 NC_006370.1 hypothetical protein 1627898 3124304 PBPRA1450 Photobacterium profundum SS9 hypothetical protein YP_129663.1 1627515 R 298386 CDS YP_129664.1 54308644 3124539 complement(1628056..1628811) 1 NC_006370.1 hypothetical protein 1628811 3124539 PBPRA1451 Photobacterium profundum SS9 hypothetical protein YP_129664.1 1628056 R 298386 CDS YP_129665.1 54308645 3125525 complement(1629086..1629478) 1 NC_006370.1 hypothetical protein 1629478 3125525 PBPRA1452 Photobacterium profundum SS9 hypothetical protein YP_129665.1 1629086 R 298386 CDS YP_129666.1 54308646 3123457 complement(1629488..1631533) 1 NC_006370.1 alkaline serine protease 1631533 3123457 PBPRA1453 Photobacterium profundum SS9 alkaline serine protease YP_129666.1 1629488 R 298386 CDS YP_129667.1 54308647 3124219 complement(1631709..1631951) 1 NC_006370.1 hypothetical protein 1631951 3124219 PBPRA1454 Photobacterium profundum SS9 hypothetical protein YP_129667.1 1631709 R 298386 CDS YP_129668.1 54308648 3122408 1632041..1632454 1 NC_006370.1 hypothetical protein 1632454 3122408 PBPRA1455 Photobacterium profundum SS9 hypothetical protein YP_129668.1 1632041 D 298386 CDS YP_129669.1 54308649 3124801 1632912..1633838 1 NC_006370.1 hypothetical protein 1633838 3124801 PBPRA1456 Photobacterium profundum SS9 hypothetical protein YP_129669.1 1632912 D 298386 CDS YP_129670.1 54308650 3123835 complement(1634245..1635879) 1 NC_006370.1 omega-3 polyunsaturated fatty acid synthase PfaD 1635879 3123835 PBPRA1457 Photobacterium profundum SS9 omega-3 polyunsaturated fatty acid synthase PfaD YP_129670.1 1634245 R 298386 CDS YP_129671.1 54308651 3123783 complement(1635898..1641918) 1 NC_006370.1 omega-3 polyunsaturated fatty acid synthase PfaC 1641918 3123783 PBPRA1458 Photobacterium profundum SS9 omega-3 polyunsaturated fatty acid synthase PfaC YP_129671.1 1635898 R 298386 CDS YP_129672.1 54308652 3123617 complement(1641771..1643846) 1 NC_006370.1 omega-3 polyunsaturated fatty acid synthase PfaB 1643846 3123617 PBPRA1459 Photobacterium profundum SS9 omega-3 polyunsaturated fatty acid synthase PfaB YP_129672.1 1641771 R 298386 CDS YP_129673.1 54308653 3123705 complement(1643870..1651615) 1 NC_006370.1 omega-3 polyunsaturated fatty acid synthase PfaA 1651615 3123705 PBPRA1460 Photobacterium profundum SS9 omega-3 polyunsaturated fatty acid synthase PfaA YP_129673.1 1643870 R 298386 CDS YP_129674.1 54308654 3124003 complement(1652677..1653096) 1 NC_006370.1 hypothetical protein 1653096 3124003 PBPRA1461 Photobacterium profundum SS9 hypothetical protein YP_129674.1 1652677 R 298386 CDS YP_129675.1 54308655 3122335 1653516..1654550 1 NC_006370.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1654550 3122335 PBPRA1462 Photobacterium profundum SS9 3-oxoacyl-ACP synthase YP_129675.1 1653516 D 298386 CDS YP_129676.1 54308656 3125101 1654662..1655573 1 NC_006370.1 haloalkane dehalogenase 1655573 3125101 PBPRA1463 Photobacterium profundum SS9 haloalkane dehalogenase YP_129676.1 1654662 D 298386 CDS YP_129677.1 54308657 3122228 1655570..1657327 1 NC_006370.1 Catalyzes the specific recognition and activation of amino acids during peptide synthesis; peptide synthase 1657327 3122228 PBPRA1464 Photobacterium profundum SS9 peptide synthase YP_129677.1 1655570 D 298386 CDS YP_129678.1 54308658 3124466 1657324..1658439 1 NC_006370.1 steroid dehydrogenase 1658439 3124466 PBPRA1465 Photobacterium profundum SS9 steroid dehydrogenase YP_129678.1 1657324 D 298386 CDS YP_129679.1 54308659 3123550 complement(1658529..1660397) 1 NC_006370.1 methyl-accepting chemotaxis protein 1660397 3123550 PBPRA1466 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_129679.1 1658529 R 298386 CDS YP_129680.1 54308660 3121967 complement(1660806..1663274) 1 NC_006370.1 trimethylamine-N-oxide reductase 1663274 3121967 PBPRA1467 Photobacterium profundum SS9 trimethylamine-N-oxide reductase YP_129680.1 1660806 R 298386 CDS YP_129681.1 54308661 3122843 complement(1663292..1664470) 1 NC_006370.1 cytochrome c-type protein TorC 1664470 3122843 PBPRA1468 Photobacterium profundum SS9 cytochrome c-type protein TorC YP_129681.1 1663292 R 298386 CDS YP_129682.1 54308662 3123208 complement(1665306..1666409) 1 NC_006370.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1666409 hemH 3123208 hemH Photobacterium profundum SS9 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_129682.1 1665306 R 298386 CDS YP_129683.1 54308663 3125246 1666891..1669218 1 NC_006370.1 hypothetical protein 1669218 3125246 PBPRA1470 Photobacterium profundum SS9 hypothetical protein YP_129683.1 1666891 D 298386 CDS YP_129684.1 54308664 3124667 1669257..1670153 1 NC_006370.1 LysR family transcriptional regulator 1670153 3124667 PBPRA1471 Photobacterium profundum SS9 LysR family transcriptional regulator YP_129684.1 1669257 D 298386 CDS YP_129685.1 54308665 3124610 complement(1670195..1671904) 1 NC_006370.1 hypothetical protein 1671904 3124610 PBPRA1472 Photobacterium profundum SS9 hypothetical protein YP_129685.1 1670195 R 298386 CDS YP_129686.1 54308666 3124438 complement(1672459..1673934) 1 NC_006370.1 hypothetical protein 1673934 3124438 PBPRA1473 Photobacterium profundum SS9 hypothetical protein YP_129686.1 1672459 R 298386 CDS YP_129687.1 54308667 3123713 complement(1674625..1675386) 1 NC_006370.1 hypothetical protein 1675386 3123713 PBPRA1474 Photobacterium profundum SS9 hypothetical protein YP_129687.1 1674625 R 298386 CDS YP_129688.1 54308668 3124016 1675889..1676686 1 NC_006370.1 hypothetical protein 1676686 3124016 PBPRA1475 Photobacterium profundum SS9 hypothetical protein YP_129688.1 1675889 D 298386 CDS YP_129689.1 54308669 3122158 1676768..1677715 1 NC_006370.1 amino acid ABC transporter permease 1677715 3122158 PBPRA1476 Photobacterium profundum SS9 amino acid ABC transporter permease YP_129689.1 1676768 D 298386 CDS YP_129690.1 54308670 3122616 1677708..1678460 1 NC_006370.1 amino acid ABC transporter 1678460 3122616 PBPRA1477 Photobacterium profundum SS9 amino acid ABC transporter YP_129690.1 1677708 D 298386 CDS YP_129691.1 54308671 3125064 complement(1678579..1679451) 1 NC_006370.1 hypothetical protein 1679451 3125064 PBPRA1478 Photobacterium profundum SS9 hypothetical protein YP_129691.1 1678579 R 298386 CDS YP_129692.1 54308672 3124449 complement(1679436..1680680) 1 NC_006370.1 Na(+)/H(+)-dicarboxylate symporters 1680680 3124449 PBPRA1479 Photobacterium profundum SS9 Na(+)/H(+)-dicarboxylate symporters YP_129692.1 1679436 R 298386 CDS YP_129693.1 54308673 3122052 complement(1680863..1681993) 1 NC_006370.1 alcohol dehydrogenase class III 1681993 3122052 PBPRA1480 Photobacterium profundum SS9 alcohol dehydrogenase class III YP_129693.1 1680863 R 298386 CDS YP_129694.1 54308674 3123199 complement(1682181..1683467) 1 NC_006370.1 uncharacterized member of the APC superfamily of amino acid transporters; unknown function; hypothetical protein 1683467 3123199 PBPRA1481 Photobacterium profundum SS9 hypothetical protein YP_129694.1 1682181 R 298386 CDS YP_129695.1 54308675 3123095 1683636..1684052 1 NC_006370.1 AsnC family transcriptional regulator 1684052 3123095 PBPRA1482 Photobacterium profundum SS9 AsnC family transcriptional regulator YP_129695.1 1683636 D 298386 CDS YP_129696.1 54308676 3125534 complement(1684353..1684631) 1 NC_006370.1 hypothetical protein 1684631 3125534 PBPRA1483 Photobacterium profundum SS9 hypothetical protein YP_129696.1 1684353 R 298386 CDS YP_129697.1 54308677 3124974 complement(1684752..1686677) 1 NC_006370.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1686677 dnaK 3124974 dnaK Photobacterium profundum SS9 molecular chaperone DnaK YP_129697.1 1684752 R 298386 CDS YP_129698.1 54308678 3121939 complement(1686932..1687390) 1 NC_006370.1 16 kDa heat shock protein A 1687390 3121939 PBPRA1485 Photobacterium profundum SS9 16 kDa heat shock protein A YP_129698.1 1686932 R 298386 CDS YP_129699.1 54308679 3123881 complement(1687793..1688857) 1 NC_006370.1 hypothetical protein 1688857 3123881 PBPRA1486 Photobacterium profundum SS9 hypothetical protein YP_129699.1 1687793 R 298386 CDS YP_129700.1 54308680 3123936 1688954..1689232 1 NC_006370.1 hypothetical protein 1689232 3123936 PBPRA1487 Photobacterium profundum SS9 hypothetical protein YP_129700.1 1688954 D 298386 CDS YP_129701.1 54308681 3124460 complement(1689237..1689968) 1 NC_006370.1 transposase 1689968 3124460 PBPRA1488 Photobacterium profundum SS9 transposase YP_129701.1 1689237 R 298386 CDS YP_129702.1 54308682 3124345 complement(1690205..1690513) 1 NC_006370.1 hypothetical protein 1690513 3124345 PBPRA1489 Photobacterium profundum SS9 hypothetical protein YP_129702.1 1690205 R 298386 CDS YP_129703.1 54308683 3124305 1690787..1691863 1 NC_006370.1 hypothetical protein 1691863 3124305 PBPRA1490 Photobacterium profundum SS9 hypothetical protein YP_129703.1 1690787 D 298386 CDS YP_129704.1 54308684 3124821 complement(1692041..1692289) 1 NC_006370.1 hypothetical protein 1692289 3124821 PBPRA1491 Photobacterium profundum SS9 hypothetical protein YP_129704.1 1692041 R 298386 CDS YP_129705.1 54308685 3124453 1692698..1693087 1 NC_006370.1 hypothetical protein 1693087 3124453 PBPRA1492 Photobacterium profundum SS9 hypothetical protein YP_129705.1 1692698 D 298386 CDS YP_129706.1 54308686 3123737 complement(1693224..1693781) 1 NC_006370.1 hypothetical protein 1693781 3123737 PBPRA1493 Photobacterium profundum SS9 hypothetical protein YP_129706.1 1693224 R 298386 CDS YP_129707.1 54308687 3124317 complement(1693983..1694633) 1 NC_006370.1 TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD 1694633 torD 3124317 torD Photobacterium profundum SS9 chaperone protein TorD YP_129707.1 1693983 R 298386 CDS YP_129708.1 54308688 3122713 complement(1694883..1697414) 1 NC_006370.1 trimethylamine-N-oxide reductase 1 precursor 1697414 3122713 PBPRA1495 Photobacterium profundum SS9 trimethylamine-N-oxide reductase 1 precursor YP_129708.1 1694883 R 298386 CDS YP_129709.1 54308689 3122923 complement(1697484..1698650) 1 NC_006370.1 hypotetical trimethylamine N-oxide reductase,cytochrome c-type subunit 1698650 3122923 PBPRA1496 Photobacterium profundum SS9 hypotetical trimethylamine N-oxide reductase,cytochrome c-type subunit YP_129709.1 1697484 R 298386 CDS YP_129710.1 54308690 3123262 1698851..1699564 1 NC_006370.1 response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR 1699564 3123262 PBPRA1497 Photobacterium profundum SS9 DNA-binding transcriptional regulator TorR YP_129710.1 1698851 D 298386 CDS YP_129711.1 54308691 3122054 complement(1700030..1701679) 1 NC_006370.1 glutamate decarboxylase 1701679 3122054 PBPRA1498 Photobacterium profundum SS9 glutamate decarboxylase YP_129711.1 1700030 R 298386 CDS YP_129712.1 54308692 3124405 complement(1701843..1702823) 1 NC_006370.1 periplasmic protein 1702823 3124405 PBPRA1499 Photobacterium profundum SS9 periplasmic protein YP_129712.1 1701843 R 298386 CDS YP_129713.1 54308693 3122072 complement(1703198..1703710) 1 NC_006370.1 hypothetical protein 1703710 3122072 PBPRA1500 Photobacterium profundum SS9 hypothetical protein YP_129713.1 1703198 R 298386 CDS YP_129714.1 54308694 3122953 1704040..1704411 1 NC_006370.1 hypothetical protein 1704411 3122953 PBPRA1501 Photobacterium profundum SS9 hypothetical protein YP_129714.1 1704040 D 298386 CDS YP_129715.1 54308695 3122695 complement(1704552..1705013) 1 NC_006370.1 hypothetical protein 1705013 3122695 PBPRA1502 Photobacterium profundum SS9 hypothetical protein YP_129715.1 1704552 R 298386 CDS YP_129716.1 54308696 3122878 complement(1705166..1705855) 1 NC_006370.1 hypothetical protein 1705855 3122878 PBPRA1503 Photobacterium profundum SS9 hypothetical protein YP_129716.1 1705166 R 298386 CDS YP_129717.1 54308697 3124790 complement(1706054..1707058) 1 NC_006370.1 hypothetical protein 1707058 3124790 PBPRA1504 Photobacterium profundum SS9 hypothetical protein YP_129717.1 1706054 R 298386 CDS YP_129718.1 54308698 3124824 1707628..1707912 1 NC_006370.1 DNA-damage-inducible protein J 1707912 3124824 PBPRA1505 Photobacterium profundum SS9 DNA-damage-inducible protein J YP_129718.1 1707628 D 298386 CDS YP_129719.1 54308699 3125239 1707909..1708187 1 NC_006370.1 hypothetical protein 1708187 3125239 PBPRA1506 Photobacterium profundum SS9 hypothetical protein YP_129719.1 1707909 D 298386 CDS YP_129720.1 54308700 3124303 complement(1708331..1708642) 1 NC_006370.1 hypothetical protein 1708642 3124303 PBPRA1507 Photobacterium profundum SS9 hypothetical protein YP_129720.1 1708331 R 298386 CDS YP_129721.1 54308701 3124330 complement(1708657..1709028) 1 NC_006370.1 hypothetical protein 1709028 3124330 PBPRA1508 Photobacterium profundum SS9 hypothetical protein YP_129721.1 1708657 R 298386 CDS YP_129722.1 54308702 3122317 complement(1709030..1709752) 1 NC_006370.1 hypothetical protein 1709752 3122317 PBPRA1509 Photobacterium profundum SS9 hypothetical protein YP_129722.1 1709030 R 298386 CDS YP_129723.1 54308703 3122076 complement(1710345..1711832) 1 NC_006370.1 sodium-dependent transporter 1711832 3122076 PBPRA1510 Photobacterium profundum SS9 sodium-dependent transporter YP_129723.1 1710345 R 298386 CDS YP_129724.1 54308704 3124691 complement(1712217..1712816) 1 NC_006370.1 hypothetical protein 1712816 3124691 PBPRA1511 Photobacterium profundum SS9 hypothetical protein YP_129724.1 1712217 R 298386 CDS YP_129725.1 54308705 3124093 1713322..1714485 1 NC_006370.1 alpha/beta hydrolase 1714485 3124093 PBPRA1512 Photobacterium profundum SS9 alpha/beta hydrolase YP_129725.1 1713322 D 298386 CDS YP_129726.1 54308706 3124524 complement(1714574..1715584) 1 NC_006370.1 catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase 1715584 3124524 PBPRA1513 Photobacterium profundum SS9 manganese-dependent inorganic pyrophosphatase YP_129726.1 1714574 R 298386 CDS YP_129727.1 54308707 3123845 complement(1715729..1716886) 1 NC_006370.1 hypothetical protein 1716886 3123845 PBPRA1514 Photobacterium profundum SS9 hypothetical protein YP_129727.1 1715729 R 298386 CDS YP_129728.1 54308708 3122755 complement(1716786..1717478) 1 NC_006370.1 hypothetical protein 1717478 3122755 PBPRA1515 Photobacterium profundum SS9 hypothetical protein YP_129728.1 1716786 R 298386 CDS YP_129729.1 54308709 3124520 1717473..1717724 1 NC_006370.1 hypothetical protein 1717724 3124520 PBPRA1516 Photobacterium profundum SS9 hypothetical protein YP_129729.1 1717473 D 298386 CDS YP_129730.1 54308710 3124555 1718093..1719385 1 NC_006370.1 prolyl aminopeptidase 1719385 3124555 PBPRA1517 Photobacterium profundum SS9 prolyl aminopeptidase YP_129730.1 1718093 D 298386 CDS YP_129731.1 54308711 3124280 1719739..1720092 1 NC_006370.1 hypothetical protein 1720092 3124280 PBPRA1518 Photobacterium profundum SS9 hypothetical protein YP_129731.1 1719739 D 298386 CDS YP_129732.1 54308712 3125020 1720465..1720875 1 NC_006370.1 GTP cyclohydrolase II 1720875 3125020 PBPRA1519 Photobacterium profundum SS9 GTP cyclohydrolase II YP_129732.1 1720465 D 298386 CDS YP_129733.1 54308713 3123868 1720887..1721063 1 NC_006370.1 hypothetical protein 1721063 3123868 PBPRA1520 Photobacterium profundum SS9 hypothetical protein YP_129733.1 1720887 D 298386 CDS YP_129734.1 54308714 3125125 1721434..1722642 1 NC_006370.1 multidrug efflux protein involved in adaptation to low energy shock; multidrug resistance protein D 1722642 emrD 3125125 emrD Photobacterium profundum SS9 multidrug resistance protein D YP_129734.1 1721434 D 298386 CDS YP_129735.1 54308715 3122966 complement(1722766..1723092) 1 NC_006370.1 highly acidic protein; the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi); binds heat-unstable protein (HU-alpha) which is a histone-like protein; dsDNA-mimic protein 1723092 3122966 PBPRA1522 Photobacterium profundum SS9 dsDNA-mimic protein YP_129735.1 1722766 R 298386 CDS YP_129736.1 54308716 3123315 complement(1723227..1724774) 1 NC_006370.1 hypothetical protein 1724774 3123315 PBPRA1523 Photobacterium profundum SS9 hypothetical protein YP_129736.1 1723227 R 298386 CDS YP_129737.1 54308717 3122053 complement(1725751..1726041) 1 NC_006370.1 hypothetical protein 1726041 3122053 PBPRA1524 Photobacterium profundum SS9 hypothetical protein YP_129737.1 1725751 R 298386 CDS YP_129738.1 54308718 3124366 complement(1726545..1727972) 1 NC_006370.1 hypothetical protein 1727972 3124366 PBPRA1525 Photobacterium profundum SS9 hypothetical protein YP_129738.1 1726545 R 298386 CDS YP_129739.1 54308719 3122333 complement(1728123..1728719) 1 NC_006370.1 hypothetical protein 1728719 3122333 PBPRA1526 Photobacterium profundum SS9 hypothetical protein YP_129739.1 1728123 R 298386 CDS YP_129740.1 54308720 3124057 complement(1729069..1730538) 1 NC_006370.1 PTR2 family transport protein 1730538 3124057 PBPRA1527 Photobacterium profundum SS9 PTR2 family transport protein YP_129740.1 1729069 R 298386 CDS YP_129741.1 54308721 3124215 1730945..1731292 1 NC_006370.1 transposase 1731292 3124215 PBPRA1528 Photobacterium profundum SS9 transposase YP_129741.1 1730945 D 298386 CDS YP_129742.1 54308722 3124834 complement(1731486..1732973) 1 NC_006370.1 PTR2 family transport protein 1732973 3124834 PBPRA1529 Photobacterium profundum SS9 PTR2 family transport protein YP_129742.1 1731486 R 298386 CDS YP_129743.1 54308723 3122110 1733361..1734134 1 NC_006370.1 hypothetical protein 1734134 3122110 PBPRA1530 Photobacterium profundum SS9 hypothetical protein YP_129743.1 1733361 D 298386 CDS YP_129744.1 54308724 3124562 1734239..1736548 1 NC_006370.1 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II 1736548 3124562 PBPRA1531 Photobacterium profundum SS9 DNA polymerase II YP_129744.1 1734239 D 298386 CDS YP_129745.1 54308725 3124487 complement(1736702..1737013) 1 NC_006370.1 hypothetical protein 1737013 3124487 PBPRA1532 Photobacterium profundum SS9 hypothetical protein YP_129745.1 1736702 R 298386 CDS YP_129746.1 54308726 3122679 1737231..1737542 1 NC_006370.1 Fe-S protein 1737542 3122679 PBPRA1533 Photobacterium profundum SS9 Fe-S protein YP_129746.1 1737231 D 298386 CDS YP_129747.2 161936313 3124207 complement(1737645..1737923) 1 NC_006370.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 1737923 3124207 PBPRA1534 Photobacterium profundum SS9 50S ribosomal protein L25 YP_129747.2 1737645 R 298386 CDS YP_129748.1 54308728 3121944 1738246..1740393 1 NC_006370.1 heme receptor 1740393 3121944 PBPRA1535 Photobacterium profundum SS9 heme receptor YP_129748.1 1738246 D 298386 CDS YP_129749.1 54308729 3124310 complement(1740502..1741668) 1 NC_006370.1 isoaspartyl dipeptidase 1741668 3124310 PBPRA1536 Photobacterium profundum SS9 isoaspartyl dipeptidase YP_129749.1 1740502 R 298386 CDS YP_129750.1 54308730 3122746 1742327..1743520 1 NC_006370.1 methylamine metabolism protein 1743520 3122746 PBPRA1537 Photobacterium profundum SS9 methylamine metabolism protein YP_129750.1 1742327 D 298386 CDS YP_129751.1 54308731 3123799 complement(1743512..1744579) 1 NC_006370.1 hypothetical protein 1744579 3123799 PBPRA1538 Photobacterium profundum SS9 hypothetical protein YP_129751.1 1743512 R 298386 CDS YP_129752.1 54308732 3124361 complement(1744989..1746770) 1 NC_006370.1 ATP-dependent helicase 1746770 3124361 PBPRA1539 Photobacterium profundum SS9 ATP-dependent helicase YP_129752.1 1744989 R 298386 CDS YP_129753.1 54308733 3122722 1747057..1748124 1 NC_006370.1 heavy metal membrane efflux protein 1748124 3122722 PBPRA1540 Photobacterium profundum SS9 heavy metal membrane efflux protein YP_129753.1 1747057 D 298386 CDS YP_129754.1 54308734 3123939 1748135..1748509 1 NC_006370.1 repressor protein 1748509 3123939 PBPRA1541 Photobacterium profundum SS9 repressor protein YP_129754.1 1748135 D 298386 CDS YP_129755.1 54308735 3121984 1748526..1750298 1 NC_006370.1 arsenical pump-driving ATPase(arsenite-translocating ATPase) 1750298 3121984 PBPRA1542 Photobacterium profundum SS9 arsenical pump-driving ATPase(arsenite-translocating ATPase) YP_129755.1 1748526 D 298386 CDS YP_129756.1 54308736 3123154 complement(1750421..1750915) 1 NC_006370.1 hypothetical protein 1750915 3123154 PBPRA1543 Photobacterium profundum SS9 hypothetical protein YP_129756.1 1750421 R 298386 CDS YP_129757.1 54308737 3123549 1751224..1751922 1 NC_006370.1 hypothetical protein 1751922 3123549 PBPRA1544 Photobacterium profundum SS9 hypothetical protein YP_129757.1 1751224 D 298386 CDS YP_129758.1 54308738 3122056 1752176..1753390 1 NC_006370.1 Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; bicyclomycin/multidrug efflux system 1753390 3122056 PBPRA1545 Photobacterium profundum SS9 bicyclomycin/multidrug efflux system YP_129758.1 1752176 D 298386 CDS YP_129759.1 54308739 3122215 1753484..1754143 1 NC_006370.1 hypothetical protein 1754143 3122215 PBPRA1546 Photobacterium profundum SS9 hypothetical protein YP_129759.1 1753484 D 298386 CDS YP_129760.1 54308740 3122862 complement(1754519..1755067) 1 NC_006370.1 hypothetical protein 1755067 3122862 PBPRA1547 Photobacterium profundum SS9 hypothetical protein YP_129760.1 1754519 R 298386 CDS YP_129761.1 54308741 3122768 1755558..1756148 1 NC_006370.1 hypothetical protein 1756148 3122768 PBPRA1548 Photobacterium profundum SS9 hypothetical protein YP_129761.1 1755558 D 298386 CDS YP_129762.1 54308742 3125516 1756242..1756895 1 NC_006370.1 hypothetical protein 1756895 3125516 PBPRA1549 Photobacterium profundum SS9 hypothetical protein YP_129762.1 1756242 D 298386 CDS YP_129763.1 54308743 3125039 1757233..1758825 1 NC_006370.1 glycine betaine transporter 1758825 3125039 PBPRA1550 Photobacterium profundum SS9 glycine betaine transporter YP_129763.1 1757233 D 298386 CDS YP_129764.1 54308744 3123679 complement(1759026..1760495) 1 NC_006370.1 nucleoside-diphosphate-sugar epimerase 1760495 3123679 PBPRA1551 Photobacterium profundum SS9 nucleoside-diphosphate-sugar epimerase YP_129764.1 1759026 R 298386 CDS YP_129765.1 54308745 3123484 1760716..1762083 1 NC_006370.1 hypothetical protein 1762083 3123484 PBPRA1552 Photobacterium profundum SS9 hypothetical protein YP_129765.1 1760716 D 298386 CDS YP_129766.1 54308746 3123297 1762362..1763039 1 NC_006370.1 ABC transporter, ATP-binding protein 1763039 3123297 PBPRA1553 Photobacterium profundum SS9 ABC transporter, ATP-binding protein YP_129766.1 1762362 D 298386 CDS YP_129767.1 54308747 3124804 1763020..1765479 1 NC_006370.1 hypothetical protein 1765479 3124804 PBPRA1554 Photobacterium profundum SS9 hypothetical protein YP_129767.1 1763020 D 298386 CDS YP_129768.1 54308748 3122881 1765479..1766570 1 NC_006370.1 hydrolase 1766570 3122881 PBPRA1555 Photobacterium profundum SS9 hydrolase YP_129768.1 1765479 D 298386 CDS YP_129769.1 54308749 3122857 1766605..1767900 1 NC_006370.1 hydrolase 1767900 3122857 PBPRA1556 Photobacterium profundum SS9 hydrolase YP_129769.1 1766605 D 298386 CDS YP_129770.1 54308750 3124989 1768265..1770559 1 NC_006370.1 hypothetical protein 1770559 3124989 PBPRA1557 Photobacterium profundum SS9 hypothetical protein YP_129770.1 1768265 D 298386 CDS YP_129771.1 54308751 3125471 1770676..1772229 1 NC_006370.1 outer membrane protein 1772229 3125471 PBPRA1558 Photobacterium profundum SS9 outer membrane protein YP_129771.1 1770676 D 298386 CDS YP_129772.1 54308752 3124701 1772229..1772438 1 NC_006370.1 hypothetical protein 1772438 3124701 PBPRA1559 Photobacterium profundum SS9 hypothetical protein YP_129772.1 1772229 D 298386 CDS YP_129773.1 54308753 3124680 1772441..1773337 1 NC_006370.1 hypothetical protein 1773337 3124680 PBPRA1560 Photobacterium profundum SS9 hypothetical protein YP_129773.1 1772441 D 298386 CDS YP_129774.1 54308754 3123841 1773482..1774093 1 NC_006370.1 hypothetical protein 1774093 3123841 PBPRA1561 Photobacterium profundum SS9 hypothetical protein YP_129774.1 1773482 D 298386 CDS YP_129775.1 54308755 3123344 1774095..1775216 1 NC_006370.1 hypothetical protein 1775216 3123344 PBPRA1562 Photobacterium profundum SS9 hypothetical protein YP_129775.1 1774095 D 298386 CDS YP_129776.1 54308756 3124732 complement(1775337..1777385) 1 NC_006370.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron-hydroxamate transporter permease subunit 1777385 3124732 PBPRA1563 Photobacterium profundum SS9 iron-hydroxamate transporter permease subunit YP_129776.1 1775337 R 298386 CDS YP_129777.1 54308757 3124856 complement(1777591..1778259) 1 NC_006370.1 iron(III) ABC transporter, periplasmic iron-compound-binding protein 1778259 3124856 PBPRA1564 Photobacterium profundum SS9 iron(III) ABC transporter, periplasmic iron-compound-binding protein YP_129777.1 1777591 R 298386 CDS YP_129778.1 54308758 3124032 complement(1778250..1779035) 1 NC_006370.1 iron(III) ABC transporter, ATP-binding protein 1779035 3124032 PBPRA1565 Photobacterium profundum SS9 iron(III) ABC transporter, ATP-binding protein YP_129778.1 1778250 R 298386 CDS YP_129779.1 54308759 3124073 complement(1779120..1781219) 1 NC_006370.1 iron(III) compound receptor 1781219 3124073 PBPRA1566 Photobacterium profundum SS9 iron(III) compound receptor YP_129779.1 1779120 R 298386 CDS YP_129780.1 54308760 3122590 1781766..1783478 1 NC_006370.1 hemolysin secretion ATP-binding protein 1783478 3122590 PBPRA1567 Photobacterium profundum SS9 hemolysin secretion ATP-binding protein YP_129780.1 1781766 D 298386 CDS YP_129781.1 54308761 3125487 complement(1783748..1785313) 1 NC_006370.1 hypothetical protein 1785313 3125487 PBPRA1568 Photobacterium profundum SS9 hypothetical protein YP_129781.1 1783748 R 298386 CDS YP_129782.1 54308762 3122790 complement(1785501..1786499) 1 NC_006370.1 hypothetical protein 1786499 3122790 PBPRA1569 Photobacterium profundum SS9 hypothetical protein YP_129782.1 1785501 R 298386 CDS YP_129783.1 54308763 3124179 1786883..1787827 1 NC_006370.1 hypothetical protein 1787827 3124179 PBPRA1570 Photobacterium profundum SS9 hypothetical protein YP_129783.1 1786883 D 298386 CDS YP_129784.1 54308764 3125042 1788071..1789684 1 NC_006370.1 hypothetical protein 1789684 3125042 PBPRA1571 Photobacterium profundum SS9 hypothetical protein YP_129784.1 1788071 D 298386 CDS YP_129785.1 54308765 3122983 complement(1789749..1790732) 1 NC_006370.1 binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR 1790732 3122983 PBPRA1572 Photobacterium profundum SS9 DNA-binding transcriptional regulator FruR YP_129785.1 1789749 R 298386 CDS YP_129786.1 54308766 3122274 1791073..1792191 1 NC_006370.1 phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr; bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein 1792191 3122274 PBPRA1573 Photobacterium profundum SS9 bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein YP_129786.1 1791073 D 298386 CDS YP_129787.1 54308767 3122579 1792194..1793222 1 NC_006370.1 1-phosphofructokinase 1793222 3122579 PBPRA1574 Photobacterium profundum SS9 1-phosphofructokinase YP_129787.1 1792194 D 298386 CDS YP_129788.1 54308768 3122265 1793244..1794983 1 NC_006370.1 PTS system, fructose-specific IIBC component 1794983 3122265 PBPRA1575 Photobacterium profundum SS9 PTS system, fructose-specific IIBC component YP_129788.1 1793244 D 298386 CDS YP_129789.1 54308769 3122139 1795432..1795827 1 NC_006370.1 hypothetical protein 1795827 3122139 PBPRA1576 Photobacterium profundum SS9 hypothetical protein YP_129789.1 1795432 D 298386 CDS YP_129790.1 54308770 3124197 complement(1795931..1797337) 1 NC_006370.1 arginine/ornithine antiporter 1797337 3124197 PBPRA1577 Photobacterium profundum SS9 arginine/ornithine antiporter YP_129790.1 1795931 R 298386 CDS YP_129791.1 54308771 3124900 complement(1797538..1798008) 1 NC_006370.1 SOS-response cell division inhibitor 1798008 3124900 PBPRA1578 Photobacterium profundum SS9 SOS-response cell division inhibitor YP_129791.1 1797538 R 298386 CDS YP_129792.1 54308772 3123013 1799171..1800142 1 NC_006370.1 hypothetical protein 1800142 3123013 PBPRA1579 Photobacterium profundum SS9 hypothetical protein YP_129792.1 1799171 D 298386 CDS YP_129793.1 54308773 3125050 complement(1800147..1801343) 1 NC_006370.1 transposase 1801343 3125050 PBPRA1580 Photobacterium profundum SS9 transposase YP_129793.1 1800147 R 298386 CDS YP_129794.1 54308774 3122020 1801879..1803159 1 NC_006370.1 transposase 1803159 3122020 PBPRA1581 Photobacterium profundum SS9 transposase YP_129794.1 1801879 D 298386 CDS YP_129795.1 54308775 3125160 1803275..1803583 1 NC_006370.1 hypothetical protein 1803583 3125160 PBPRA1582 Photobacterium profundum SS9 hypothetical protein YP_129795.1 1803275 D 298386 CDS YP_129796.1 54308776 3124926 1803580..1805532 1 NC_006370.1 hypothetical protein 1805532 3124926 PBPRA1583 Photobacterium profundum SS9 hypothetical protein YP_129796.1 1803580 D 298386 CDS YP_129797.1 54308777 3122369 1805869..1810845 1 NC_006370.1 hypothetical protein 1810845 3122369 PBPRA1584 Photobacterium profundum SS9 hypothetical protein YP_129797.1 1805869 D 298386 CDS YP_129798.1 54308778 3121999 1810842..1812263 1 NC_006370.1 hypothetical protein 1812263 3121999 PBPRA1585 Photobacterium profundum SS9 hypothetical protein YP_129798.1 1810842 D 298386 CDS YP_129799.1 54308779 3122730 1812820..1813113 1 NC_006370.1 hypothetical protein 1813113 3122730 PBPRA1586 Photobacterium profundum SS9 hypothetical protein YP_129799.1 1812820 D 298386 CDS YP_129800.1 54308780 3122630 1813282..1814142 1 NC_006370.1 transposase 1814142 3122630 PBPRA1587 Photobacterium profundum SS9 transposase YP_129800.1 1813282 D 298386 CDS YP_129801.1 54308781 3123236 1814474..1814764 1 NC_006370.1 transposase 1814764 3123236 PBPRA1588 Photobacterium profundum SS9 transposase YP_129801.1 1814474 D 298386 CDS YP_129802.1 54308782 3122132 1814800..1815354 1 NC_006370.1 hypothetical protein 1815354 3122132 PBPRA1589 Photobacterium profundum SS9 hypothetical protein YP_129802.1 1814800 D 298386 CDS YP_129803.1 54308783 3123811 complement(1815598..1817142) 1 NC_006370.1 hypotethical transposase 1817142 3123811 PBPRA1590 Photobacterium profundum SS9 hypotethical transposase YP_129803.1 1815598 R 298386 CDS YP_129804.1 54308784 3124421 complement(1817251..1817598) 1 NC_006370.1 hypothetical protein 1817598 3124421 PBPRA1591 Photobacterium profundum SS9 hypothetical protein YP_129804.1 1817251 R 298386 CDS YP_129805.1 54308785 3125254 complement(1817598..1817894) 1 NC_006370.1 hypothetical protein 1817894 3125254 PBPRA1592 Photobacterium profundum SS9 hypothetical protein YP_129805.1 1817598 R 298386 CDS YP_129806.1 54308786 3124117 1818063..1823024 1 NC_006370.1 hypothetical protein 1823024 3124117 PBPRA1593 Photobacterium profundum SS9 hypothetical protein YP_129806.1 1818063 D 298386 CDS YP_129807.1 54308787 3125320 1823024..1824574 1 NC_006370.1 hypothetical protein 1824574 3125320 PBPRA1594 Photobacterium profundum SS9 hypothetical protein YP_129807.1 1823024 D 298386 CDS YP_129808.1 54308788 3124056 1825022..1825639 1 NC_006370.1 hypothetical protein 1825639 3124056 PBPRA1595 Photobacterium profundum SS9 hypothetical protein YP_129808.1 1825022 D 298386 CDS YP_129809.1 54308789 3124964 1826082..1828391 1 NC_006370.1 hypothetical protein 1828391 3124964 PBPRA1596 Photobacterium profundum SS9 hypothetical protein YP_129809.1 1826082 D 298386 CDS YP_129810.1 54308790 3122252 1828517..1829713 1 NC_006370.1 hypothetical protein 1829713 3122252 PBPRA1597 Photobacterium profundum SS9 hypothetical protein YP_129810.1 1828517 D 298386 CDS YP_129811.1 54308791 3121972 1829710..1831908 1 NC_006370.1 ATP-dependent helicase 1831908 3121972 PBPRA1598 Photobacterium profundum SS9 ATP-dependent helicase YP_129811.1 1829710 D 298386 CDS YP_129812.1 54308792 3122808 1832878..1833318 1 NC_006370.1 hypothetical protein 1833318 3122808 PBPRA1599 Photobacterium profundum SS9 hypothetical protein YP_129812.1 1832878 D 298386 CDS YP_129813.1 54308793 3122677 complement(1833472..1833855) 1 NC_006370.1 hypothetical protein 1833855 3122677 PBPRA1600 Photobacterium profundum SS9 hypothetical protein YP_129813.1 1833472 R 298386 CDS YP_129814.1 54308794 3123302 complement(1833925..1834575) 1 NC_006370.1 hypothetical protein 1834575 3123302 PBPRA1601 Photobacterium profundum SS9 hypothetical protein YP_129814.1 1833925 R 298386 CDS YP_129815.1 54308795 3123884 complement(1834604..1834849) 1 NC_006370.1 hypothetical protein 1834849 3123884 PBPRA1602 Photobacterium profundum SS9 hypothetical protein YP_129815.1 1834604 R 298386 CDS YP_129816.1 54308796 3124248 1834940..1835338 1 NC_006370.1 hypothetical protein 1835338 3124248 PBPRA1603 Photobacterium profundum SS9 hypothetical protein YP_129816.1 1834940 D 298386 CDS YP_129817.1 54308797 3123613 1836067..1837497 1 NC_006370.1 Fe-S oxidoreductase 1837497 3123613 PBPRA1604 Photobacterium profundum SS9 Fe-S oxidoreductase YP_129817.1 1836067 D 298386 CDS YP_129818.1 54308798 3125349 complement(1838787..1839347) 1 NC_006370.1 hymidylate kinase 1839347 3125349 PBPRA1605 Photobacterium profundum SS9 hymidylate kinase YP_129818.1 1838787 R 298386 CDS YP_129819.1 54308799 3122826 1839409..1839705 1 NC_006370.1 hypothetical protein 1839705 3122826 PBPRA1606 Photobacterium profundum SS9 hypothetical protein YP_129819.1 1839409 D 298386 CDS YP_129820.1 54308800 3124910 1839705..1840052 1 NC_006370.1 hypothetical protein 1840052 3124910 PBPRA1607 Photobacterium profundum SS9 hypothetical protein YP_129820.1 1839705 D 298386 CDS YP_129821.1 54308801 3122876 1840174..1841706 1 NC_006370.1 transposase 1841706 3122876 PBPRA1608 Photobacterium profundum SS9 transposase YP_129821.1 1840174 D 298386 CDS YP_129822.1 54308802 3123028 complement(1842231..1842515) 1 NC_006370.1 hypothetical protein 1842515 3123028 PBPRA1609 Photobacterium profundum SS9 hypothetical protein YP_129822.1 1842231 R 298386 CDS YP_129823.1 54308803 3122875 complement(1842755..1843621) 1 NC_006370.1 hypothetical protein 1843621 3122875 PBPRA1610 Photobacterium profundum SS9 hypothetical protein YP_129823.1 1842755 R 298386 CDS YP_129824.1 54308804 3122840 complement(1843770..1844474) 1 NC_006370.1 hypothetical protein 1844474 3122840 PBPRA1611 Photobacterium profundum SS9 hypothetical protein YP_129824.1 1843770 R 298386 CDS YP_129825.1 54308805 3124807 complement(1844465..1844809) 1 NC_006370.1 hypothetical protein 1844809 3124807 PBPRA1612 Photobacterium profundum SS9 hypothetical protein YP_129825.1 1844465 R 298386 CDS YP_129826.1 54308806 3123805 complement(1844806..1845300) 1 NC_006370.1 hypothetical protein 1845300 3123805 PBPRA1613 Photobacterium profundum SS9 hypothetical protein YP_129826.1 1844806 R 298386 CDS YP_129827.1 54308807 3123906 complement(1845610..1846431) 1 NC_006370.1 hypothetical protein 1846431 3123906 PBPRA1614 Photobacterium profundum SS9 hypothetical protein YP_129827.1 1845610 R 298386 CDS YP_129828.1 54308808 3123167 1846887..1847345 1 NC_006370.1 hypothetical protein 1847345 3123167 PBPRA1615 Photobacterium profundum SS9 hypothetical protein YP_129828.1 1846887 D 298386 CDS YP_129829.1 54308809 3125428 1847490..1847921 1 NC_006370.1 hypothetical protein 1847921 3125428 PBPRA1616 Photobacterium profundum SS9 hypothetical protein YP_129829.1 1847490 D 298386 CDS YP_129830.1 54308810 3125299 complement(1848095..1850014) 1 NC_006370.1 flagellin 1850014 3125299 PBPRA1617 Photobacterium profundum SS9 flagellin YP_129830.1 1848095 R 298386 CDS YP_129831.1 54308811 3125420 1850047..1850292 1 NC_006370.1 hypothetical protein 1850292 3125420 PBPRA1618 Photobacterium profundum SS9 hypothetical protein YP_129831.1 1850047 D 298386 CDS YP_129832.1 54308812 3122819 1850541..1851158 1 NC_006370.1 hypothetical protein 1851158 3122819 PBPRA1619 Photobacterium profundum SS9 hypothetical protein YP_129832.1 1850541 D 298386 CDS YP_129833.1 54308813 3122612 1851155..1851715 1 NC_006370.1 hypothetical protein 1851715 3122612 PBPRA1620 Photobacterium profundum SS9 hypothetical protein YP_129833.1 1851155 D 298386 CDS YP_129834.1 54308814 3122342 1851715..1853085 1 NC_006370.1 hypothetical protein 1853085 3122342 PBPRA1621 Photobacterium profundum SS9 hypothetical protein YP_129834.1 1851715 D 298386 CDS YP_129835.1 54308815 3123409 1853091..1854014 1 NC_006370.1 hypothetical protein 1854014 3123409 PBPRA1622 Photobacterium profundum SS9 hypothetical protein YP_129835.1 1853091 D 298386 CDS YP_129836.1 54308816 3123510 1854011..1855744 1 NC_006370.1 hypothetical protein 1855744 3123510 PBPRA1623 Photobacterium profundum SS9 hypothetical protein YP_129836.1 1854011 D 298386 CDS YP_129837.1 54308817 3123085 1856739..1857269 1 NC_006370.1 hypothetical protein 1857269 3123085 PBPRA1624 Photobacterium profundum SS9 hypothetical protein YP_129837.1 1856739 D 298386 CDS YP_129838.1 54308818 3123059 complement(1857534..1858370) 1 NC_006370.1 reverse transcriptase/maturase family protein 1858370 3123059 PBPRA1625 Photobacterium profundum SS9 reverse transcriptase/maturase family protein YP_129838.1 1857534 R 298386 CDS YP_129839.1 54308819 3124707 1858530..1859297 1 NC_006370.1 transposase 1859297 3124707 PBPRA1626 Photobacterium profundum SS9 transposase YP_129839.1 1858530 D 298386 CDS YP_129840.1 54308820 3123779 complement(1859285..1860481) 1 NC_006370.1 hypothetical protein 1860481 3123779 PBPRA1627 Photobacterium profundum SS9 hypothetical protein YP_129840.1 1859285 R 298386 CDS YP_129841.1 54308821 3122489 1860777..1861064 1 NC_006370.1 hypothetical protein 1861064 3122489 PBPRA1628 Photobacterium profundum SS9 hypothetical protein YP_129841.1 1860777 D 298386 CDS YP_129842.1 54308822 3122225 complement(1861197..1861826) 1 NC_006370.1 recombinase 1861826 3122225 PBPRA1629 Photobacterium profundum SS9 recombinase YP_129842.1 1861197 R 298386 CDS YP_129843.1 54308823 3122185 1862317..1862664 1 NC_006370.1 transposase 1862664 3122185 PBPRA1630 Photobacterium profundum SS9 transposase YP_129843.1 1862317 D 298386 CDS YP_129844.1 54308824 3124323 1862896..1863465 1 NC_006370.1 acyltransferase 1863465 3124323 PBPRA1631 Photobacterium profundum SS9 acyltransferase YP_129844.1 1862896 D 298386 CDS YP_129845.1 54308825 3125280 1863755..1864084 1 NC_006370.1 hypothetical protein 1864084 3125280 PBPRA1632 Photobacterium profundum SS9 hypothetical protein YP_129845.1 1863755 D 298386 CDS YP_129846.1 54308826 3125490 1864204..1864557 1 NC_006370.1 hypothetical protein 1864557 3125490 PBPRA1633 Photobacterium profundum SS9 hypothetical protein YP_129846.1 1864204 D 298386 CDS YP_129847.1 54308827 3123825 1864622..1865128 1 NC_006370.1 hypothetical protein 1865128 3123825 PBPRA1634 Photobacterium profundum SS9 hypothetical protein YP_129847.1 1864622 D 298386 CDS YP_129848.1 54308828 3123680 complement(1865300..1865719) 1 NC_006370.1 transposase 1865719 3123680 PBPRA1635 Photobacterium profundum SS9 transposase YP_129848.1 1865300 R 298386 CDS YP_129849.1 54308829 3123717 1866098..1866811 1 NC_006370.1 hypothetical protein 1866811 3123717 PBPRA1636 Photobacterium profundum SS9 hypothetical protein YP_129849.1 1866098 D 298386 CDS YP_129850.1 54308830 3123371 complement(1867376..1868572) 1 NC_006370.1 transposase 1868572 3123371 PBPRA1637 Photobacterium profundum SS9 transposase YP_129850.1 1867376 R 298386 CDS YP_129851.1 54308831 3124862 1869164..1869730 1 NC_006370.1 hypothetical protein 1869730 3124862 PBPRA1638 Photobacterium profundum SS9 hypothetical protein YP_129851.1 1869164 D 298386 CDS YP_129852.1 54308832 3123890 1869865..1870119 1 NC_006370.1 hypothetical protein 1870119 3123890 PBPRA1639 Photobacterium profundum SS9 hypothetical protein YP_129852.1 1869865 D 298386 CDS YP_129853.1 54308833 3124585 complement(1870174..1871124) 1 NC_006370.1 transposase 1871124 3124585 PBPRA1640 Photobacterium profundum SS9 transposase YP_129853.1 1870174 R 298386 CDS YP_129854.1 54308834 3122908 complement(1871643..1872839) 1 NC_006370.1 transposase 1872839 3122908 PBPRA1641 Photobacterium profundum SS9 transposase YP_129854.1 1871643 R 298386 CDS YP_129855.1 54308835 3122743 1873072..1873623 1 NC_006370.1 hypothetical protein 1873623 3122743 PBPRA1642 Photobacterium profundum SS9 hypothetical protein YP_129855.1 1873072 D 298386 CDS YP_129856.1 54308836 3122666 complement(1874053..1874385) 1 NC_006370.1 hypothetical protein 1874385 3122666 PBPRA1643 Photobacterium profundum SS9 hypothetical protein YP_129856.1 1874053 R 298386 CDS YP_129857.1 54308837 3122482 complement(1874397..1874663) 1 NC_006370.1 hypothetical protein 1874663 3122482 PBPRA1644 Photobacterium profundum SS9 hypothetical protein YP_129857.1 1874397 R 298386 CDS YP_129858.1 54308838 3124009 1874783..1875406 1 NC_006370.1 hypothetical protein 1875406 3124009 PBPRA1645 Photobacterium profundum SS9 hypothetical protein YP_129858.1 1874783 D 298386 CDS YP_129859.1 54308839 3123897 complement(1875679..1876620) 1 NC_006370.1 hypothetical protein 1876620 3123897 PBPRA1646 Photobacterium profundum SS9 hypothetical protein YP_129859.1 1875679 R 298386 CDS YP_129860.1 54308840 3123220 complement(1876739..1877068) 1 NC_006370.1 Na(+)/H(+) antiporter 1877068 3123220 PBPRA1647 Photobacterium profundum SS9 Na(+)/H(+) antiporter YP_129860.1 1876739 R 298386 CDS YP_129861.1 54308841 3124799 1877230..1877730 1 NC_006370.1 hypothetical protein 1877730 3124799 PBPRA1648 Photobacterium profundum SS9 hypothetical protein YP_129861.1 1877230 D 298386 CDS YP_129862.1 54308842 3122012 complement(1878457..1878786) 1 NC_006370.1 hypothetical protein 1878786 3122012 PBPRA1649 Photobacterium profundum SS9 hypothetical protein YP_129862.1 1878457 R 298386 CDS YP_129863.1 54308843 3124127 1878901..1879578 1 NC_006370.1 hypothetical protein 1879578 3124127 PBPRA1650 Photobacterium profundum SS9 hypothetical protein YP_129863.1 1878901 D 298386 CDS YP_129864.1 54308844 3124168 complement(1879600..1879881) 1 NC_006370.1 hypothetical protein 1879881 3124168 PBPRA1651 Photobacterium profundum SS9 hypothetical protein YP_129864.1 1879600 R 298386 CDS YP_129865.1 54308845 3122970 1880243..1880686 1 NC_006370.1 hypothetical protein 1880686 3122970 PBPRA1652 Photobacterium profundum SS9 hypothetical protein YP_129865.1 1880243 D 298386 CDS YP_129866.1 54308846 3122877 1880786..1881802 1 NC_006370.1 transposase 1881802 3122877 PBPRA1653 Photobacterium profundum SS9 transposase YP_129866.1 1880786 D 298386 CDS YP_129867.1 54308847 3123342 1882111..1882533 1 NC_006370.1 hypothetical protein 1882533 3123342 PBPRA1654 Photobacterium profundum SS9 hypothetical protein YP_129867.1 1882111 D 298386 CDS YP_129868.1 54308848 3122099 1882573..1883349 1 NC_006370.1 hypothetical protein 1883349 3122099 PBPRA1655 Photobacterium profundum SS9 hypothetical protein YP_129868.1 1882573 D 298386 CDS YP_129869.1 54308849 3122381 complement(1883403..1884056) 1 NC_006370.1 glutathione S-transferase 1884056 3122381 PBPRA1656 Photobacterium profundum SS9 glutathione S-transferase YP_129869.1 1883403 R 298386 CDS YP_129870.1 54308850 3122212 complement(1884213..1885799) 1 NC_006370.1 ABC transporter ATPase 1885799 3122212 PBPRA1657 Photobacterium profundum SS9 ABC transporter ATPase YP_129870.1 1884213 R 298386 CDS YP_129871.1 54308851 3125070 1886154..1886897 1 NC_006370.1 hypothetical protein 1886897 3125070 PBPRA1658 Photobacterium profundum SS9 hypothetical protein YP_129871.1 1886154 D 298386 CDS YP_129872.1 54308852 3123229 1887599..1889125 1 NC_006370.1 hypothetical protein 1889125 3123229 PBPRA1659 Photobacterium profundum SS9 hypothetical protein YP_129872.1 1887599 D 298386 CDS YP_129873.1 54308853 3122057 1889299..1890951 1 NC_006370.1 hypothetical protein 1890951 3122057 PBPRA1660 Photobacterium profundum SS9 hypothetical protein YP_129873.1 1889299 D 298386 CDS YP_129874.1 54308854 3122392 1890944..1892632 1 NC_006370.1 ABC transporter ATP-binding protein 1892632 3122392 PBPRA1661 Photobacterium profundum SS9 ABC transporter ATP-binding protein YP_129874.1 1890944 D 298386 CDS YP_129875.1 54308855 3123973 complement(1892709..1894352) 1 NC_006370.1 EntE, peptide arylation enzyme 1894352 3123973 PBPRA1662 Photobacterium profundum SS9 EntE, peptide arylation enzyme YP_129875.1 1892709 R 298386 CDS YP_129876.1 54308856 3123984 complement(1894349..1895752) 1 NC_006370.1 hypotetical anthranilate synthase 1895752 3123984 PBPRA1663 Photobacterium profundum SS9 hypotetical anthranilate synthase YP_129876.1 1894349 R 298386 CDS YP_129877.1 54308857 3125265 complement(1895774..1896610) 1 NC_006370.1 thioesterase 1896610 3125265 PBPRA1664 Photobacterium profundum SS9 thioesterase YP_129877.1 1895774 R 298386 CDS YP_129878.2 161936312 3122963 complement(1896624..1897706) 1 NC_006370.1 reductase component 1897706 3122963 PBPRA1665 Photobacterium profundum SS9 reductase component YP_129878.2 1896624 R 298386 CDS YP_129879.1 54308859 3122882 complement(1897699..1899423) 1 NC_006370.1 AMP-binding enzyme 1899423 3122882 PBPRA1666 Photobacterium profundum SS9 AMP-binding enzyme YP_129879.1 1897699 R 298386 CDS YP_129880.1 54308860 3123452 complement(1899721..1909869) 1 NC_006370.1 Beta-ketoacyl synthase 1909869 3123452 PBPRA1667 Photobacterium profundum SS9 Beta-ketoacyl synthase YP_129880.1 1899721 R 298386 CDS YP_129881.1 54308861 3125540 complement(1909933..1916121) 1 NC_006370.1 non-ribosomal peptide synthetase 1916121 3125540 PBPRA1668 Photobacterium profundum SS9 non-ribosomal peptide synthetase YP_129881.1 1909933 R 298386 CDS YP_129882.1 54308862 3124538 complement(1916238..1917506) 1 NC_006370.1 hypothetical protein 1917506 3124538 PBPRA1669 Photobacterium profundum SS9 hypothetical protein YP_129882.1 1916238 R 298386 CDS YP_129883.1 54308863 3122777 complement(1917511..1919478) 1 NC_006370.1 outer membrane receptor 1919478 3122777 PBPRA1670 Photobacterium profundum SS9 outer membrane receptor YP_129883.1 1917511 R 298386 CDS YP_129884.1 54308864 3122667 complement(1919730..1920662) 1 NC_006370.1 transcriptional regulator 1920662 3122667 PBPRA1671 Photobacterium profundum SS9 transcriptional regulator YP_129884.1 1919730 R 298386 CDS YP_129885.1 54308865 3124609 complement(1920893..1921858) 1 NC_006370.1 AraC family transcriptional regulator 1921858 3124609 PBPRA1672 Photobacterium profundum SS9 AraC family transcriptional regulator YP_129885.1 1920893 R 298386 CDS YP_129886.1 54308866 3125100 1923083..1923430 1 NC_006370.1 transposase 1923430 3125100 PBPRA1677 Photobacterium profundum SS9 transposase YP_129886.1 1923083 D 298386 CDS YP_129887.1 54308867 3124962 1923649..1924122 1 NC_006370.1 signal peptide protein 1924122 3124962 PBPRA1678 Photobacterium profundum SS9 signal peptide protein YP_129887.1 1923649 D 298386 CDS YP_129888.1 54308868 3125245 1924383..1925891 1 NC_006370.1 transport protein 1925891 3125245 PBPRA1679 Photobacterium profundum SS9 transport protein YP_129888.1 1924383 D 298386 CDS YP_129889.1 54308869 3125152 complement(1925984..1927474) 1 NC_006370.1 hypothetical protein 1927474 3125152 PBPRA1680 Photobacterium profundum SS9 hypothetical protein YP_129889.1 1925984 R 298386 CDS YP_129890.1 54308870 3125097 1927752..1928123 1 NC_006370.1 spore germination protein 1928123 3125097 PBPRA1681 Photobacterium profundum SS9 spore germination protein YP_129890.1 1927752 D 298386 CDS YP_129891.1 54308871 3124677 complement(1928128..1928565) 1 NC_006370.1 hypothetical protein 1928565 3124677 PBPRA1682 Photobacterium profundum SS9 hypothetical protein YP_129891.1 1928128 R 298386 CDS YP_129892.1 54308872 3124628 1928812..1929120 1 NC_006370.1 hypothetical protein 1929120 3124628 PBPRA1683 Photobacterium profundum SS9 hypothetical protein YP_129892.1 1928812 D 298386 CDS YP_129893.1 54308873 3124599 1929359..1930000 1 NC_006370.1 catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 1930000 3124599 PBPRA1684 Photobacterium profundum SS9 thiopurine S-methyltransferase YP_129893.1 1929359 D 298386 CDS YP_129894.1 54308874 3124653 complement(1930187..1931362) 1 NC_006370.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 1931362 purT 3124653 purT Photobacterium profundum SS9 phosphoribosylglycinamide formyltransferase 2 YP_129894.1 1930187 R 298386 CDS YP_129895.1 54308875 3124620 1931805..1932182 1 NC_006370.1 hypothetical protein 1932182 3124620 PBPRA1686 Photobacterium profundum SS9 hypothetical protein YP_129895.1 1931805 D 298386 CDS YP_129896.1 54308876 3124621 complement(1932305..1933276) 1 NC_006370.1 immunogenic protein 1933276 3124621 PBPRA1687 Photobacterium profundum SS9 immunogenic protein YP_129896.1 1932305 R 298386 CDS YP_129897.1 54308877 3124646 complement(1933615..1934511) 1 NC_006370.1 transporter 1934511 3124646 PBPRA1688 Photobacterium profundum SS9 transporter YP_129897.1 1933615 R 298386 CDS YP_129898.1 54308878 3124678 complement(1934681..1935568) 1 NC_006370.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 1935568 3124678 PBPRA1689 Photobacterium profundum SS9 cytidine deaminase YP_129898.1 1934681 R 298386 CDS YP_129899.1 54308879 3125398 complement(1935780..1936463) 1 NC_006370.1 yohK (seritonin transporter) 1936463 3125398 PBPRA1690 Photobacterium profundum SS9 yohK (seritonin transporter) YP_129899.1 1935780 R 298386 CDS YP_129900.1 54308880 3123300 complement(1936463..1936801) 1 NC_006370.1 hypothetical protein 1936801 3123300 PBPRA1691 Photobacterium profundum SS9 hypothetical protein YP_129900.1 1936463 R 298386 CDS YP_129901.1 54308881 3124342 complement(1936945..1937469) 1 NC_006370.1 hypothetical protein 1937469 3124342 PBPRA1692 Photobacterium profundum SS9 hypothetical protein YP_129901.1 1936945 R 298386 CDS YP_129902.1 54308882 3122812 complement(1937769..1939193) 1 NC_006370.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 1939193 sbcB 3122812 sbcB Photobacterium profundum SS9 exonuclease I YP_129902.1 1937769 R 298386 CDS YP_129903.1 54308883 3121968 1939371..1940546 1 NC_006370.1 hypothetical protein 1940546 3121968 PBPRA1694 Photobacterium profundum SS9 hypothetical protein YP_129903.1 1939371 D 298386 CDS YP_129904.1 54308884 3123248 1940780..1941061 1 NC_006370.1 hypothetical protein 1941061 3123248 PBPRA1695 Photobacterium profundum SS9 hypothetical protein YP_129904.1 1940780 D 298386 CDS YP_129905.1 54308885 3125227 1941058..1941357 1 NC_006370.1 hypothetical protein 1941357 3125227 PBPRA1696 Photobacterium profundum SS9 hypothetical protein YP_129905.1 1941058 D 298386 CDS YP_129906.1 54308886 3125038 complement(1941598..1942650) 1 NC_006370.1 IS91 family transposase 1942650 3125038 PBPRA1697 Photobacterium profundum SS9 IS91 family transposase YP_129906.1 1941598 R 298386 CDS YP_129907.1 54308887 3125065 complement(1942647..1943189) 1 NC_006370.1 integrase-recombinase 1943189 3125065 PBPRA1698 Photobacterium profundum SS9 integrase-recombinase YP_129907.1 1942647 R 298386 CDS YP_129908.1 54308888 3124828 1943589..1943885 1 NC_006370.1 hypothetical protein 1943885 3124828 PBPRA1699 Photobacterium profundum SS9 hypothetical protein YP_129908.1 1943589 D 298386 CDS YP_129909.1 54308889 3124670 1944160..1944888 1 NC_006370.1 hypothetical protein 1944888 3124670 PBPRA1700 Photobacterium profundum SS9 hypothetical protein YP_129909.1 1944160 D 298386 CDS YP_129910.1 54308890 3124598 complement(1945084..1946649) 1 NC_006370.1 hypothetical protein 1946649 3124598 PBPRA1701 Photobacterium profundum SS9 hypothetical protein YP_129910.1 1945084 R 298386 CDS YP_129911.1 54308891 3124527 complement(1947212..1948249) 1 NC_006370.1 hypothetical protein 1948249 3124527 PBPRA1702 Photobacterium profundum SS9 hypothetical protein YP_129911.1 1947212 R 298386 CDS YP_129912.1 54308892 3122569 1948293..1948670 1 NC_006370.1 hypothetical protein 1948670 3122569 PBPRA1703 Photobacterium profundum SS9 hypothetical protein YP_129912.1 1948293 D 298386 CDS YP_129913.1 54308893 3124404 complement(1948720..1949739) 1 NC_006370.1 transposase 1949739 3124404 PBPRA1704 Photobacterium profundum SS9 transposase YP_129913.1 1948720 R 298386 CDS YP_129914.1 54308894 3124409 complement(1949772..1950293) 1 NC_006370.1 transposase 1950293 3124409 PBPRA1705 Photobacterium profundum SS9 transposase YP_129914.1 1949772 R 298386 CDS YP_129915.1 54308895 3124282 1950895..1951350 1 NC_006370.1 transposase 1951350 3124282 PBPRA1706 Photobacterium profundum SS9 transposase YP_129915.1 1950895 D 298386 CDS YP_129916.1 54308896 3125043 1951527..1951832 1 NC_006370.1 ATP-dependent helicase 1951832 3125043 PBPRA1707 Photobacterium profundum SS9 ATP-dependent helicase YP_129916.1 1951527 D 298386 CDS YP_129917.1 54308897 3124553 complement(1951855..1952730) 1 NC_006370.1 hypothetical protein 1952730 3124553 PBPRA1708 Photobacterium profundum SS9 hypothetical protein YP_129917.1 1951855 R 298386 CDS YP_129918.1 54308898 3124419 1953610..1954890 1 NC_006370.1 transposase 1954890 3124419 PBPRA1709 Photobacterium profundum SS9 transposase YP_129918.1 1953610 D 298386 CDS YP_129919.1 54308899 3124234 1955049..1956059 1 NC_006370.1 hypothetical protein 1956059 3124234 PBPRA1710 Photobacterium profundum SS9 hypothetical protein YP_129919.1 1955049 D 298386 CDS YP_129920.1 54308900 3125000 1956066..1956422 1 NC_006370.1 hypothetical protein 1956422 3125000 PBPRA1711 Photobacterium profundum SS9 hypothetical protein YP_129920.1 1956066 D 298386 CDS YP_129921.1 54308901 3125186 1956795..1957826 1 NC_006370.1 hypothetical protein 1957826 3125186 PBPRA1712 Photobacterium profundum SS9 hypothetical protein YP_129921.1 1956795 D 298386 CDS YP_129922.1 54308902 3122480 1957877..1958242 1 NC_006370.1 hypothetical protein 1958242 3122480 PBPRA1713 Photobacterium profundum SS9 hypothetical protein YP_129922.1 1957877 D 298386 CDS YP_129923.1 54308903 3122782 complement(1958431..1958889) 1 NC_006370.1 hypothetical protein 1958889 3122782 PBPRA1714 Photobacterium profundum SS9 hypothetical protein YP_129923.1 1958431 R 298386 CDS YP_129924.1 54308904 3122918 complement(1958911..1961082) 1 NC_006370.1 hypothetical protein 1961082 3122918 PBPRA1715 Photobacterium profundum SS9 hypothetical protein YP_129924.1 1958911 R 298386 CDS YP_129925.1 54308905 3122469 complement(1961413..1963050) 1 NC_006370.1 hypothetical protein 1963050 3122469 PBPRA1716 Photobacterium profundum SS9 hypothetical protein YP_129925.1 1961413 R 298386 CDS YP_129926.1 54308906 3125189 complement(1963238..1964830) 1 NC_006370.1 hypothetical protein 1964830 3125189 PBPRA1717 Photobacterium profundum SS9 hypothetical protein YP_129926.1 1963238 R 298386 CDS YP_129927.1 54308907 3123320 1964981..1965229 1 NC_006370.1 hypothetical protein 1965229 3123320 PBPRA1718 Photobacterium profundum SS9 hypothetical protein YP_129927.1 1964981 D 298386 CDS YP_129928.1 54308908 3123216 1965230..1966039 1 NC_006370.1 hypothetical protein 1966039 3123216 PBPRA1719 Photobacterium profundum SS9 hypothetical protein YP_129928.1 1965230 D 298386 CDS YP_129929.1 54308909 3123161 1966026..1968656 1 NC_006370.1 polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis; cellulose synthase catalytic subunit 1968656 bcsA 3123161 bcsA Photobacterium profundum SS9 cellulose synthase catalytic subunit YP_129929.1 1966026 D 298386 CDS YP_129930.1 54308910 3125025 1968646..1970922 1 NC_006370.1 binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); cellulose synthase regulator protein 1970922 3125025 PBPRA1721 Photobacterium profundum SS9 cellulose synthase regulator protein YP_129930.1 1968646 D 298386 CDS YP_129931.1 54308911 3124446 1970919..1972028 1 NC_006370.1 catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; endo-1,4-D-glucanase 1972028 3124446 PBPRA1722 Photobacterium profundum SS9 endo-1,4-D-glucanase YP_129931.1 1970919 D 298386 CDS YP_129932.1 54308912 3122747 1972025..1975810 1 NC_006370.1 hypothetical protein 1975810 3122747 PBPRA1723 Photobacterium profundum SS9 hypothetical protein YP_129932.1 1972025 D 298386 CDS YP_129933.1 54308913 3122598 complement(1975910..1977349) 1 NC_006370.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase 1977349 3122598 PBPRA1724 Photobacterium profundum SS9 glyceraldehyde-3-phosphate dehydrogenase YP_129933.1 1975910 R 298386 CDS YP_129934.1 54308914 3125062 complement(1977968..1979125) 1 NC_006370.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 1979125 anmK 3125062 anmK Photobacterium profundum SS9 anhydro-N-acetylmuramic acid kinase YP_129934.1 1977968 R 298386 CDS YP_129935.1 54308915 3124956 complement(1979354..1981219) 1 NC_006370.1 maltodextrin glucosidase 1981219 3124956 PBPRA1726 Photobacterium profundum SS9 maltodextrin glucosidase YP_129935.1 1979354 R 298386 CDS YP_129936.1 54308916 3124970 complement(1981456..1981899) 1 NC_006370.1 hypothetical protein 1981899 3124970 PBPRA1727 Photobacterium profundum SS9 hypothetical protein YP_129936.1 1981456 R 298386 CDS YP_129937.1 54308917 3125108 complement(1982050..1982982) 1 NC_006370.1 LysR family transcriptional regulator 1982982 3125108 PBPRA1728 Photobacterium profundum SS9 LysR family transcriptional regulator YP_129937.1 1982050 R 298386 CDS YP_129938.1 54308918 3125024 1983189..1984400 1 NC_006370.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate CoA ligase 1984400 3125024 PBPRA1729 Photobacterium profundum SS9 2-amino-3-ketobutyrate CoA ligase YP_129938.1 1983189 D 298386 CDS YP_129939.2 161936311 3125455 1984587..1985618 1 NC_006370.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 1985618 tdh 3125455 tdh Photobacterium profundum SS9 L-threonine 3-dehydrogenase YP_129939.2 1984587 D 298386 CDS YP_129940.1 54308920 3125067 complement(1985752..1986177) 1 NC_006370.1 hypothetical protein 1986177 3125067 PBPRA1731 Photobacterium profundum SS9 hypothetical protein YP_129940.1 1985752 R 298386 CDS YP_129941.1 54308921 3123148 complement(1986300..1987094) 1 NC_006370.1 hypothetical protein 1987094 3123148 PBPRA1732 Photobacterium profundum SS9 hypothetical protein YP_129941.1 1986300 R 298386 CDS YP_129942.1 54308922 3122640 complement(1987474..1988628) 1 NC_006370.1 hypothetical protein 1988628 3122640 PBPRA1733 Photobacterium profundum SS9 hypothetical protein YP_129942.1 1987474 R 298386 CDS YP_129943.1 54308923 3124985 1988825..1989751 1 NC_006370.1 hypothetical protein 1989751 3124985 PBPRA1734 Photobacterium profundum SS9 hypothetical protein YP_129943.1 1988825 D 298386 CDS YP_129944.1 54308924 3124911 1989850..1991304 1 NC_006370.1 hypothetical protein 1991304 3124911 PBPRA1735 Photobacterium profundum SS9 hypothetical protein YP_129944.1 1989850 D 298386 CDS YP_129945.1 54308925 3124728 1991734..1992651 1 NC_006370.1 hypothetical protein 1992651 3124728 PBPRA1736 Photobacterium profundum SS9 hypothetical protein YP_129945.1 1991734 D 298386 CDS YP_129946.1 54308926 3124288 1992838..1994433 1 NC_006370.1 ABC transporter, ATP-binding protein 1994433 3124288 PBPRA1737 Photobacterium profundum SS9 ABC transporter, ATP-binding protein YP_129946.1 1992838 D 298386 CDS YP_129947.1 54308927 3123742 1994593..1995045 1 NC_006370.1 hypothetical protein 1995045 3123742 PBPRA1738 Photobacterium profundum SS9 hypothetical protein YP_129947.1 1994593 D 298386 CDS YP_129948.1 54308928 3124625 1995229..1995507 1 NC_006370.1 hypothetical protein 1995507 3124625 PBPRA1739 Photobacterium profundum SS9 hypothetical protein YP_129948.1 1995229 D 298386 CDS YP_129949.1 54308929 3125093 complement(1995575..1996657) 1 NC_006370.1 hypothetical protein 1996657 3125093 PBPRA1740 Photobacterium profundum SS9 hypothetical protein YP_129949.1 1995575 R 298386 CDS YP_129950.1 54308930 3125030 complement(1996838..1997512) 1 NC_006370.1 hypothetical protein 1997512 3125030 PBPRA1741 Photobacterium profundum SS9 hypothetical protein YP_129950.1 1996838 R 298386 CDS YP_129951.1 54308931 3122883 complement(1997741..1998100) 1 NC_006370.1 hypothetical protein 1998100 3122883 PBPRA1742 Photobacterium profundum SS9 hypothetical protein YP_129951.1 1997741 R 298386 CDS YP_129952.1 54308932 3125158 1998575..1999492 1 NC_006370.1 chemotaxis protein CheY 1999492 3125158 PBPRA1743 Photobacterium profundum SS9 chemotaxis protein CheY YP_129952.1 1998575 D 298386 CDS YP_129953.1 54308933 3125075 1999489..2000469 1 NC_006370.1 sensory box/GGDEF family protein 2000469 3125075 PBPRA1744 Photobacterium profundum SS9 sensory box/GGDEF family protein YP_129953.1 1999489 D 298386 CDS YP_129954.1 54308934 3125163 2000551..2000895 1 NC_006370.1 hypothetical protein 2000895 3125163 PBPRA1745 Photobacterium profundum SS9 hypothetical protein YP_129954.1 2000551 D 298386 CDS YP_129955.1 54308935 3125219 2001313..2002041 1 NC_006370.1 hypothetical protein 2002041 3125219 PBPRA1746 Photobacterium profundum SS9 hypothetical protein YP_129955.1 2001313 D 298386 CDS YP_129956.1 54308936 3124377 2002480..2003391 1 NC_006370.1 catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine; N-acetyl-D-glucosamine kinase 2003391 3124377 PBPRA1747 Photobacterium profundum SS9 N-acetyl-D-glucosamine kinase YP_129956.1 2002480 D 298386 CDS YP_129957.1 54308937 3123107 2003598..2004866 1 NC_006370.1 ATP-dependent RNA helicase 2004866 3123107 PBPRA1748 Photobacterium profundum SS9 ATP-dependent RNA helicase YP_129957.1 2003598 D 298386 CDS YP_129958.1 54308938 3122374 complement(2005183..2005959) 1 NC_006370.1 hypothetical protein 2005959 3122374 PBPRA1749 Photobacterium profundum SS9 hypothetical protein YP_129958.1 2005183 R 298386 CDS YP_129959.1 54308939 3121995 complement(2006309..2007142) 1 NC_006370.1 hypothetical protein 2007142 3121995 PBPRA1750 Photobacterium profundum SS9 hypothetical protein YP_129959.1 2006309 R 298386 CDS YP_129960.1 54308940 3125331 2007327..2009690 1 NC_006370.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 2009690 3125331 PBPRA1751 Photobacterium profundum SS9 phosphoenolpyruvate synthase YP_129960.1 2007327 D 298386 CDS YP_129961.1 54308941 3125493 complement(2009762..2010211) 1 NC_006370.1 hypothetical protein 2010211 3125493 PBPRA1752 Photobacterium profundum SS9 hypothetical protein YP_129961.1 2009762 R 298386 CDS YP_129962.1 54308942 3123506 complement(2010398..2011282) 1 NC_006370.1 AraC family transcriptional regulator 2011282 3123506 PBPRA1753 Photobacterium profundum SS9 AraC family transcriptional regulator YP_129962.1 2010398 R 298386 CDS YP_129963.1 54308943 3123463 complement(2011430..2011747) 1 NC_006370.1 hypothetical protein 2011747 3123463 PBPRA1754 Photobacterium profundum SS9 hypothetical protein YP_129963.1 2011430 R 298386 CDS YP_129964.1 54308944 3123019 complement(2011744..2013309) 1 NC_006370.1 hypothetical protein 2013309 3123019 PBPRA1755 Photobacterium profundum SS9 hypothetical protein YP_129964.1 2011744 R 298386 CDS YP_129965.1 54308945 3123193 2014654..2014914 1 NC_006370.1 hypothetical protein 2014914 3123193 PBPRA1756 Photobacterium profundum SS9 hypothetical protein YP_129965.1 2014654 D 298386 CDS YP_129966.2 161936310 3123078 2014986..2018825 1 NC_006370.1 involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain; ATP-dependent RNA helicase HrpA 2018825 3123078 PBPRA1757 Photobacterium profundum SS9 ATP-dependent RNA helicase HrpA YP_129966.2 2014986 D 298386 CDS YP_129967.1 54308947 3123761 2019038..2021296 1 NC_006370.1 collagenase family protease 2021296 3123761 PBPRA1758 Photobacterium profundum SS9 collagenase family protease YP_129967.1 2019038 D 298386 CDS YP_129968.1 54308948 3123937 2021519..2021977 1 NC_006370.1 hypothetical protein 2021977 3123937 PBPRA1759 Photobacterium profundum SS9 hypothetical protein YP_129968.1 2021519 D 298386 CDS YP_129969.1 54308949 3123338 complement(2022424..2023812) 1 NC_006370.1 PTS system glucose-specific II BC component 2023812 3123338 PBPRA1760 Photobacterium profundum SS9 PTS system glucose-specific II BC component YP_129969.1 2022424 R 298386 CDS YP_129970.1 54308950 3123197 complement(2024341..2024748) 1 NC_006370.1 hypothetical protein 2024748 3123197 PBPRA1761 Photobacterium profundum SS9 hypothetical protein YP_129970.1 2024341 R 298386 CDS YP_129971.1 54308951 3125167 complement(2024772..2025128) 1 NC_006370.1 hypothetical protein 2025128 3125167 PBPRA1762 Photobacterium profundum SS9 hypothetical protein YP_129971.1 2024772 R 298386 CDS YP_129972.1 54308952 3124035 complement(2025357..2026574) 1 NC_006370.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 2026574 3124035 PBPRA1763 Photobacterium profundum SS9 nicotinate phosphoribosyltransferase YP_129972.1 2025357 R 298386 CDS YP_129973.1 54308953 3125378 2026907..2029534 1 NC_006370.1 aminopeptidase 2029534 pepN 3125378 pepN Photobacterium profundum SS9 aminopeptidase YP_129973.1 2026907 D 298386 CDS YP_129974.1 54308954 3125528 2029586..2029870 1 NC_006370.1 hypothetical protein 2029870 3125528 PBPRA1765 Photobacterium profundum SS9 hypothetical protein YP_129974.1 2029586 D 298386 CDS YP_129975.1 54308955 3123194 2030254..2035083 1 NC_006370.1 NAD-glutamate dehydrogenase 2035083 3123194 PBPRA1766 Photobacterium profundum SS9 NAD-glutamate dehydrogenase YP_129975.1 2030254 D 298386 CDS YP_129976.1 54308956 3125082 2035405..2036415 1 NC_006370.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2036415 3125082 PBPRA1767 Photobacterium profundum SS9 dihydroorotate dehydrogenase 2 YP_129976.1 2035405 D 298386 CDS YP_129977.1 54308957 3125224 2036659..2037198 1 NC_006370.1 hypothetical protein 2037198 3125224 PBPRA1768 Photobacterium profundum SS9 hypothetical protein YP_129977.1 2036659 D 298386 CDS YP_129978.1 54308958 3123889 2038189..2040327 1 NC_006370.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 2040327 rlmL 3123889 rlmL Photobacterium profundum SS9 23S rRNA m(2)G2445 methyltransferase YP_129978.1 2038189 D 298386 CDS YP_129979.1 54308959 3123944 2040328..2040651 1 NC_006370.1 hypothetical protein 2040651 3123944 PBPRA1770 Photobacterium profundum SS9 hypothetical protein YP_129979.1 2040328 D 298386 CDS YP_129980.1 54308960 3122801 2040638..2042566 1 NC_006370.1 Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase component 2042566 3122801 PBPRA1771 Photobacterium profundum SS9 ABC transporter ATPase component YP_129980.1 2040638 D 298386 CDS YP_129981.1 54308961 3124027 2042566..2044626 1 NC_006370.1 hypothetical protein 2044626 3124027 PBPRA1772 Photobacterium profundum SS9 hypothetical protein YP_129981.1 2042566 D 298386 CDS YP_129982.1 54308962 3124130 complement(2045256..2045771) 1 NC_006370.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 2045771 3124130 PBPRA1773 Photobacterium profundum SS9 3-hydroxydecanoyl-ACP dehydratase YP_129982.1 2045256 R 298386 CDS YP_129983.1 54308963 3123312 complement(2045840..2047588) 1 NC_006370.1 ATP-dependent protease LA-like protein 2047588 3123312 PBPRA1774 Photobacterium profundum SS9 ATP-dependent protease LA-like protein YP_129983.1 2045840 R 298386 CDS YP_129984.1 54308964 3123277 2047783..2048229 1 NC_006370.1 hypothetical protein 2048229 3123277 PBPRA1775 Photobacterium profundum SS9 hypothetical protein YP_129984.1 2047783 D 298386 CDS YP_129985.1 54308965 3123072 2048324..2048629 1 NC_006370.1 hypothetical protein 2048629 3123072 PBPRA1776 Photobacterium profundum SS9 hypothetical protein YP_129985.1 2048324 D 298386 CDS YP_129986.1 54308966 3123112 2048716..2049111 1 NC_006370.1 DNA-binding protein 2049111 3123112 PBPRA1777 Photobacterium profundum SS9 DNA-binding protein YP_129986.1 2048716 D 298386 CDS YP_129987.1 54308967 3125364 complement(2049542..2049787) 1 NC_006370.1 hypothetical protein 2049787 3125364 PBPRA1778 Photobacterium profundum SS9 hypothetical protein YP_129987.1 2049542 R 298386 CDS YP_129988.1 54308968 3125072 2050078..2050800 1 NC_006370.1 hypothetical protein 2050800 3125072 PBPRA1779 Photobacterium profundum SS9 hypothetical protein YP_129988.1 2050078 D 298386 CDS YP_129989.1 54308969 3124083 complement(<2051246..2051473) 1 NC_006370.1 hypothetical protein 2051473 3124083 PBPRA1780 Photobacterium profundum SS9 hypothetical protein YP_129989.1 <2051246 R 298386 CDS YP_129990.1 54308970 3123472 complement(2051466..2052212) 1 NC_006370.1 hypothetical protein 2052212 3123472 PBPRA1781 Photobacterium profundum SS9 hypothetical protein YP_129990.1 2051466 R 298386 CDS YP_129991.1 54308971 3123239 complement(2052332..2053018) 1 NC_006370.1 hypothetical protein 2053018 3123239 PBPRA1782 Photobacterium profundum SS9 hypothetical protein YP_129991.1 2052332 R 298386 CDS YP_129992.1 54308972 3122879 complement(2053063..2053404) 1 NC_006370.1 hypothetical protein 2053404 3122879 PBPRA1783 Photobacterium profundum SS9 hypothetical protein YP_129992.1 2053063 R 298386 CDS YP_129993.1 54308973 3123820 2053492..2054778 1 NC_006370.1 transposase 2054778 3123820 PBPRA1784 Photobacterium profundum SS9 transposase YP_129993.1 2053492 D 298386 CDS YP_129994.1 54308974 3123898 complement(2054980..2055660) 1 NC_006370.1 hypothetical protein 2055660 3123898 PBPRA1785 Photobacterium profundum SS9 hypothetical protein YP_129994.1 2054980 R 298386 CDS YP_129995.1 54308975 3125138 2056875..2058044 1 NC_006370.1 transcriptional regulator 2058044 3125138 PBPRA1786 Photobacterium profundum SS9 transcriptional regulator YP_129995.1 2056875 D 298386 CDS YP_129996.1 54308976 3122094 2058109..2058555 1 NC_006370.1 acetyltransferase 2058555 3122094 PBPRA1787 Photobacterium profundum SS9 acetyltransferase YP_129996.1 2058109 D 298386 CDS YP_129997.1 54308977 3122249 2058745..>2059500 1 NC_006370.1 transposase >2059500 3122249 PBPRA1788 Photobacterium profundum SS9 transposase YP_129997.1 2058745 D 298386 CDS YP_129998.1 54308978 3122874 2060063..2061112 1 NC_006370.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 2061112 3122874 PBPRA1789 Photobacterium profundum SS9 ribosome-associated GTPase YP_129998.1 2060063 D 298386 CDS YP_129999.1 54308979 3124491 2061449..2061739 1 NC_006370.1 hypothetical protein 2061739 3124491 PBPRA1790 Photobacterium profundum SS9 hypothetical protein YP_129999.1 2061449 D 298386 CDS YP_130000.1 54308980 3123291 2061915..2062199 1 NC_006370.1 hypothetical protein 2062199 3123291 PBPRA1791 Photobacterium profundum SS9 hypothetical protein YP_130000.1 2061915 D 298386 CDS YP_130001.1 54308981 3123206 complement(2062581..2062955) 1 NC_006370.1 hypothetical protein 2062955 3123206 PBPRA1792 Photobacterium profundum SS9 hypothetical protein YP_130001.1 2062581 R 298386 CDS YP_130002.1 54308982 3123061 2063316..2063951 1 NC_006370.1 hypothetical protein 2063951 3123061 PBPRA1793 Photobacterium profundum SS9 hypothetical protein YP_130002.1 2063316 D 298386 CDS YP_130003.1 54308983 3125371 complement(2066202..2068055) 1 NC_006370.1 hypothetical protein 2068055 3125371 PBPRA1796 Photobacterium profundum SS9 hypothetical protein YP_130003.1 2066202 R 298386 CDS YP_130004.1 54308984 3122710 complement(2068142..2068954) 1 NC_006370.1 hypothetical protein 2068954 3122710 PBPRA1797 Photobacterium profundum SS9 hypothetical protein YP_130004.1 2068142 R 298386 CDS YP_130005.1 54308985 3123038 complement(2068972..2069655) 1 NC_006370.1 hypothetical protein 2069655 3123038 PBPRA1798 Photobacterium profundum SS9 hypothetical protein YP_130005.1 2068972 R 298386 CDS YP_130006.1 54308986 3124173 complement(2069799..2071712) 1 NC_006370.1 hypothetical protein 2071712 3124173 PBPRA1799 Photobacterium profundum SS9 hypothetical protein YP_130006.1 2069799 R 298386 CDS YP_130007.1 54308987 3125397 complement(2071702..2073045) 1 NC_006370.1 hypothetical protein 2073045 3125397 PBPRA1800 Photobacterium profundum SS9 hypothetical protein YP_130007.1 2071702 R 298386 CDS YP_130008.1 54308988 3123434 complement(2073201..2075102) 1 NC_006370.1 hypothetical protein 2075102 3123434 PBPRA1801 Photobacterium profundum SS9 hypothetical protein YP_130008.1 2073201 R 298386 CDS YP_130009.1 54308989 3124946 complement(2075105..2076760) 1 NC_006370.1 Type I restriction enzyme ecoeispecificity protein 2076760 3124946 PBPRA1802 Photobacterium profundum SS9 Type I restriction enzyme ecoeispecificity protein YP_130009.1 2075105 R 298386 CDS YP_130010.1 54308990 3125377 complement(2076886..2078388) 1 NC_006370.1 type I restriction enzyme EcoEI Mprotein 2078388 3125377 PBPRA1803 Photobacterium profundum SS9 type I restriction enzyme EcoEI Mprotein YP_130010.1 2076886 R 298386 CDS YP_130011.1 54308991 3123474 complement(2078558..2081029) 1 NC_006370.1 type I restriction enzyme R protein 2081029 3123474 PBPRA1804 Photobacterium profundum SS9 type I restriction enzyme R protein YP_130011.1 2078558 R 298386 CDS YP_130012.1 54308992 3122337 complement(2081164..2082540) 1 NC_006370.1 hypothetical protein 2082540 3122337 PBPRA1805 Photobacterium profundum SS9 hypothetical protein YP_130012.1 2081164 R 298386 CDS YP_130013.1 54308993 3122994 complement(2082537..2083088) 1 NC_006370.1 hypothetical protein 2083088 3122994 PBPRA1806 Photobacterium profundum SS9 hypothetical protein YP_130013.1 2082537 R 298386 CDS YP_130014.1 54308994 3124193 2083239..2083544 1 NC_006370.1 transcriptional regulator 2083544 3124193 PBPRA1807 Photobacterium profundum SS9 transcriptional regulator YP_130014.1 2083239 D 298386 CDS YP_130015.1 54308995 3122984 2083941..2084273 1 NC_006370.1 hypothetical protein 2084273 3122984 PBPRA1808 Photobacterium profundum SS9 hypothetical protein YP_130015.1 2083941 D 298386 CDS YP_130016.1 54308996 3125144 2084517..2085404 1 NC_006370.1 hypothetical protein 2085404 3125144 PBPRA1809 Photobacterium profundum SS9 hypothetical protein YP_130016.1 2084517 D 298386 CDS YP_130017.1 54308997 3125424 2085394..2086962 1 NC_006370.1 hypothetical protein 2086962 3125424 PBPRA1810 Photobacterium profundum SS9 hypothetical protein YP_130017.1 2085394 D 298386 CDS YP_130018.1 54308998 3123135 2087275..2088471 1 NC_006370.1 hypothetical protein 2088471 3123135 PBPRA1811 Photobacterium profundum SS9 hypothetical protein YP_130018.1 2087275 D 298386 CDS YP_130019.1 54308999 3123189 2088613..2090895 1 NC_006370.1 hypothetical protein 2090895 3123189 PBPRA1812 Photobacterium profundum SS9 hypothetical protein YP_130019.1 2088613 D 298386 CDS YP_130020.1 54309000 3123337 2090895..2091353 1 NC_006370.1 hypothetical protein 2091353 3123337 PBPRA1813 Photobacterium profundum SS9 hypothetical protein YP_130020.1 2090895 D 298386 CDS YP_130021.1 54309001 3123379 2091343..2091798 1 NC_006370.1 hypothetical protein 2091798 3123379 PBPRA1814 Photobacterium profundum SS9 hypothetical protein YP_130021.1 2091343 D 298386 CDS YP_130022.1 54309002 3123227 2091798..2093969 1 NC_006370.1 ATP-dependent exoDNAse (exonuclease V), alpha subunit 2093969 3123227 PBPRA1815 Photobacterium profundum SS9 ATP-dependent exoDNAse (exonuclease V), alpha subunit YP_130022.1 2091798 D 298386 CDS YP_130023.1 54309003 3122009 complement(2094137..2094469) 1 NC_006370.1 hypothetical protein 2094469 3122009 PBPRA1816 Photobacterium profundum SS9 hypothetical protein YP_130023.1 2094137 R 298386 CDS YP_130024.1 54309004 3125018 complement(2094466..2095554) 1 NC_006370.1 cell division protein 2095554 3125018 PBPRA1817 Photobacterium profundum SS9 cell division protein YP_130024.1 2094466 R 298386 CDS YP_130025.1 54309005 3125400 complement(2096006..2096992) 1 NC_006370.1 hypothetical protein 2096992 3125400 PBPRA1818 Photobacterium profundum SS9 hypothetical protein YP_130025.1 2096006 R 298386 CDS YP_130026.1 54309006 3123322 2097999..2099564 1 NC_006370.1 hypothetical protein 2099564 3123322 PBPRA1820 Photobacterium profundum SS9 hypothetical protein YP_130026.1 2097999 D 298386 CDS YP_130027.1 54309007 3123003 complement(2099517..2100464) 1 NC_006370.1 hypothetical protein 2100464 3123003 PBPRA1821 Photobacterium profundum SS9 hypothetical protein YP_130027.1 2099517 R 298386 CDS YP_130028.1 54309008 3123350 complement(2100487..2102529) 1 NC_006370.1 hypothetical protein 2102529 3123350 PBPRA1822 Photobacterium profundum SS9 hypothetical protein YP_130028.1 2100487 R 298386 CDS YP_130029.1 54309009 3122308 2102698..2103021 1 NC_006370.1 hypothetical protein 2103021 3122308 PBPRA1823 Photobacterium profundum SS9 hypothetical protein YP_130029.1 2102698 D 298386 CDS YP_130030.1 54309010 3123139 2103018..2103371 1 NC_006370.1 hypothetical protein 2103371 3123139 PBPRA1824 Photobacterium profundum SS9 hypothetical protein YP_130030.1 2103018 D 298386 CDS YP_130031.1 54309011 3123202 2103431..2104594 1 NC_006370.1 ISPpu15 transposase Orf2 2104594 3123202 PBPRA1825 Photobacterium profundum SS9 ISPpu15 transposase Orf2 YP_130031.1 2103431 D 298386 CDS YP_130032.1 54309012 3125272 complement(2105080..2107758) 1 NC_006370.1 hypothetical protein 2107758 3125272 PBPRA1826 Photobacterium profundum SS9 hypothetical protein YP_130032.1 2105080 R 298386 CDS YP_130033.1 54309013 3124729 complement(2108443..2110524) 1 NC_006370.1 hypothetical protein 2110524 3124729 PBPRA1827 Photobacterium profundum SS9 hypothetical protein YP_130033.1 2108443 R 298386 CDS YP_130034.1 54309014 3124896 complement(2110505..2111713) 1 NC_006370.1 hypothetical protein 2111713 3124896 PBPRA1828 Photobacterium profundum SS9 hypothetical protein YP_130034.1 2110505 R 298386 CDS YP_130035.1 54309015 3123343 2111853..2112608 1 NC_006370.1 short chain dehydrogenase/reductase family oxidoreductase 2112608 3123343 PBPRA1829 Photobacterium profundum SS9 short chain dehydrogenase/reductase family oxidoreductase YP_130035.1 2111853 D 298386 CDS YP_130036.1 54309016 3124471 complement(2112759..2113202) 1 NC_006370.1 hypothetical protein 2113202 3124471 PBPRA1830 Photobacterium profundum SS9 hypothetical protein YP_130036.1 2112759 R 298386 CDS YP_130037.1 54309017 3125141 2113474..2114901 1 NC_006370.1 CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 2114901 3125141 PBPRA1831 Photobacterium profundum SS9 cbb3-type cytochrome c oxidase subunit I YP_130037.1 2113474 D 298386 CDS YP_130038.1 54309018 3123103 2114914..2115522 1 NC_006370.1 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 2115522 3123103 PBPRA1832 Photobacterium profundum SS9 cbb3-type cytochrome c oxidase subunit II YP_130038.1 2114914 D 298386 CDS YP_130039.1 54309019 3125002 2115532..2115705 1 NC_006370.1 cytochrome c oxidase, subunit CcoQ 2115705 3125002 PBPRA1833 Photobacterium profundum SS9 cytochrome c oxidase, subunit CcoQ YP_130039.1 2115532 D 298386 CDS YP_130040.1 54309020 3123387 2115711..2116691 1 NC_006370.1 cytochrome c oxidase, subunit CcoP 2116691 3123387 PBPRA1834 Photobacterium profundum SS9 cytochrome c oxidase, subunit CcoP YP_130040.1 2115711 D 298386 CDS YP_130041.1 54309021 3124115 2116813..2117307 1 NC_006370.1 hypothetical protein 2117307 3124115 PBPRA1835 Photobacterium profundum SS9 hypothetical protein YP_130041.1 2116813 D 298386 CDS YP_130042.1 54309022 3123670 2117406..2119715 1 NC_006370.1 cation transport ATPase E1-E2 family 2119715 3123670 PBPRA1836 Photobacterium profundum SS9 cation transport ATPase E1-E2 family YP_130042.1 2117406 D 298386 CDS YP_130043.1 54309023 3123245 2119932..2120609 1 NC_006370.1 hypothetical protein 2120609 3123245 PBPRA1837 Photobacterium profundum SS9 hypothetical protein YP_130043.1 2119932 D 298386 CDS YP_130044.1 54309024 3123976 2120684..2121436 1 NC_006370.1 Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 2121436 3123976 PBPRA1838 Photobacterium profundum SS9 fumarate/nitrate reduction transcriptional regulator YP_130044.1 2120684 D 298386 CDS YP_130045.2 161936309 3123925 2121630..2122571 1 NC_006370.1 with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 2122571 3123925 PBPRA1839 Photobacterium profundum SS9 universal stress protein UspE YP_130045.2 2121630 D 298386 CDS YP_130046.1 54309026 3123654 complement(2122685..2123038) 1 NC_006370.1 hypothetical protein 2123038 3123654 PBPRA1840 Photobacterium profundum SS9 hypothetical protein YP_130046.1 2122685 R 298386 CDS YP_130047.1 54309027 3123505 2123443..2124348 1 NC_006370.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 2124348 3123505 PBPRA1841 Photobacterium profundum SS9 C32 tRNA thiolase YP_130047.1 2123443 D 298386 CDS YP_130048.1 54309028 3124552 complement(2124505..2125719) 1 NC_006370.1 D-alanyl-D-alanine carboxypeptidase 2125719 3124552 PBPRA1842 Photobacterium profundum SS9 D-alanyl-D-alanine carboxypeptidase YP_130048.1 2124505 R 298386 CDS YP_130049.1 54309029 3123949 2126195..2127679 1 NC_006370.1 thermostable carboxypeptidase 1 2127679 3123949 PBPRA1843 Photobacterium profundum SS9 thermostable carboxypeptidase 1 YP_130049.1 2126195 D 298386 CDS YP_130050.1 54309030 3122372 2127842..2128162 1 NC_006370.1 hypothetical protein 2128162 3122372 PBPRA1844 Photobacterium profundum SS9 hypothetical protein YP_130050.1 2127842 D 298386 CDS YP_130051.1 54309031 3125203 complement(2128256..2128924) 1 NC_006370.1 hypothetical protein 2128924 3125203 PBPRA1845 Photobacterium profundum SS9 hypothetical protein YP_130051.1 2128256 R 298386 CDS YP_130052.1 54309032 3123725 complement(2128936..2129340) 1 NC_006370.1 hypothetical protein 2129340 3123725 PBPRA1846 Photobacterium profundum SS9 hypothetical protein YP_130052.1 2128936 R 298386 CDS YP_130053.1 54309033 3123935 2129651..2130568 1 NC_006370.1 hypothetical protein 2130568 3123935 PBPRA1847 Photobacterium profundum SS9 hypothetical protein YP_130053.1 2129651 D 298386 CDS YP_130054.1 54309034 3125458 complement(2130671..2131900) 1 NC_006370.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 2131900 3125458 PBPRA1848 Photobacterium profundum SS9 peptidase T YP_130054.1 2130671 R 298386 CDS YP_130055.1 54309035 3124634 complement(2132135..2132797) 1 NC_006370.1 hypothetical protein 2132797 3124634 PBPRA1849 Photobacterium profundum SS9 hypothetical protein YP_130055.1 2132135 R 298386 CDS YP_130056.1 54309036 3125325 complement(2132798..2133565) 1 NC_006370.1 bax protein 2133565 3125325 PBPRA1850 Photobacterium profundum SS9 bax protein YP_130056.1 2132798 R 298386 CDS YP_130057.1 54309037 3123029 complement(2133565..2134548) 1 NC_006370.1 hypothetical protein 2134548 3123029 PBPRA1851 Photobacterium profundum SS9 hypothetical protein YP_130057.1 2133565 R 298386 CDS YP_130058.1 54309038 3125229 2134990..2136108 1 NC_006370.1 functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase protein 2136108 potA 3125229 potA Photobacterium profundum SS9 putrescine/spermidine ABC transporter ATPase protein YP_130058.1 2134990 D 298386 CDS YP_130059.1 54309039 3124622 2136092..2136949 1 NC_006370.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; spermidine/putrescine ABC transporter membrane protein 2136949 potB 3124622 potB Photobacterium profundum SS9 spermidine/putrescine ABC transporter membrane protein YP_130059.1 2136092 D 298386 CDS YP_130060.1 54309040 3124432 2136949..2137719 1 NC_006370.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter membrane protein 2137719 potC 3124432 potC Photobacterium profundum SS9 spermidine/putrescine ABC transporter membrane protein YP_130060.1 2136949 D 298386 CDS YP_130061.1 54309041 3123213 2137833..2138864 1 NC_006370.1 spermidine/putrescine-binding periplasmic protein 2138864 3123213 PBPRA1855 Photobacterium profundum SS9 spermidine/putrescine-binding periplasmic protein YP_130061.1 2137833 D 298386 CDS YP_130062.1 54309042 3123090 2139093..2140136 1 NC_006370.1 permidine/putrescine ABC transporter,periplasmic spermidine/putrescine-binding protein 2140136 3123090 PBPRA1856 Photobacterium profundum SS9 permidine/putrescine ABC transporter,periplasmic spermidine/putrescine-binding protein YP_130062.1 2139093 D 298386 CDS YP_130063.1 54309043 3125336 complement(2140253..2140687) 1 NC_006370.1 transposase 2140687 3125336 PBPRA1857 Photobacterium profundum SS9 transposase YP_130063.1 2140253 R 298386 CDS YP_130064.1 54309044 3124252 complement(2141016..2141345) 1 NC_006370.1 hypothetical protein 2141345 3124252 PBPRA1858 Photobacterium profundum SS9 hypothetical protein YP_130064.1 2141016 R 298386 CDS YP_130065.1 54309045 3124231 complement(2141675..2142391) 1 NC_006370.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 2142391 3124231 PBPRA1859 Photobacterium profundum SS9 NAD-dependent deacetylase YP_130065.1 2141675 R 298386 CDS YP_130066.1 54309046 3124075 complement(2142795..2143871) 1 NC_006370.1 formate dehydrogenase, cytochrome B556subunit 2143871 3124075 PBPRA1860 Photobacterium profundum SS9 formate dehydrogenase, cytochrome B556subunit YP_130066.1 2142795 R 298386 CDS YP_130067.1 54309047 3123060 complement(2144014..2144631) 1 NC_006370.1 formate dehydrogenase, iron-sulfur subunit 2144631 3123060 PBPRA1861 Photobacterium profundum SS9 formate dehydrogenase, iron-sulfur subunit YP_130067.1 2144014 R 298386 CDS YP_130068.1 54309048 3124007 complement(2144644..2147499) 1 NC_006370.1 formate dehydrogenase largesubunit 2147499 3124007 PBPRA1862 Photobacterium profundum SS9 formate dehydrogenase largesubunit YP_130068.1 2144644 R 298386 CDS YP_130069.1 54309049 3124212 complement(2147512..2147793) 1 NC_006370.1 hypothetical protein 2147793 3124212 PBPRA1863 Photobacterium profundum SS9 hypothetical protein YP_130069.1 2147512 R 298386 CDS YP_130070.1 54309050 3124088 complement(2147815..2148423) 1 NC_006370.1 chaperone 2148423 3124088 PBPRA1864 Photobacterium profundum SS9 chaperone YP_130070.1 2147815 R 298386 CDS YP_130071.1 54309051 3122286 complement(2148448..2150193) 1 NC_006370.1 (Fe-S)-binding protein 2150193 3122286 PBPRA1865 Photobacterium profundum SS9 (Fe-S)-binding protein YP_130071.1 2148448 R 298386 CDS YP_130072.1 54309052 3122136 complement(2150464..2151189) 1 NC_006370.1 hypothetical protein 2151189 3122136 PBPRA1866 Photobacterium profundum SS9 hypothetical protein YP_130072.1 2150464 R 298386 CDS YP_130073.1 54309053 3123997 complement(2151179..2151661) 1 NC_006370.1 hypothetical protein 2151661 3123997 PBPRA1867 Photobacterium profundum SS9 hypothetical protein YP_130073.1 2151179 R 298386 CDS YP_130074.1 54309054 3122832 2152039..2152932 1 NC_006370.1 formate dehydrogenase accessory protein 2152932 3122832 PBPRA1868 Photobacterium profundum SS9 formate dehydrogenase accessory protein YP_130074.1 2152039 D 298386 CDS YP_130075.1 54309055 3123304 2152932..2153846 1 NC_006370.1 hypothetical protein 2153846 3123304 PBPRA1869 Photobacterium profundum SS9 hypothetical protein YP_130075.1 2152932 D 298386 CDS YP_130076.1 54309056 3122721 2154407..2156395 1 NC_006370.1 short chain dehydrogenase 2156395 3122721 PBPRA1870 Photobacterium profundum SS9 short chain dehydrogenase YP_130076.1 2154407 D 298386 CDS YP_130077.1 54309057 3125264 2156405..2156923 1 NC_006370.1 hypothetical protein 2156923 3125264 PBPRA1871 Photobacterium profundum SS9 hypothetical protein YP_130077.1 2156405 D 298386 CDS YP_130078.1 54309058 3123260 2157049..2157681 1 NC_006370.1 transcriptional regulator 2157681 3123260 PBPRA1872 Photobacterium profundum SS9 transcriptional regulator YP_130078.1 2157049 D 298386 CDS YP_130079.1 54309059 3123960 2158190..2159155 1 NC_006370.1 hypothetical protein 2159155 3123960 PBPRA1873 Photobacterium profundum SS9 hypothetical protein YP_130079.1 2158190 D 298386 CDS YP_130080.1 54309060 3123707 complement(2159490..2159846) 1 NC_006370.1 hypothetical protein 2159846 3123707 PBPRA1874 Photobacterium profundum SS9 hypothetical protein YP_130080.1 2159490 R 298386 CDS YP_130081.1 54309061 3125477 2160026..2160976 1 NC_006370.1 D-alanyl-D-alanine endopeptidase 2160976 3125477 PBPRA1875 Photobacterium profundum SS9 D-alanyl-D-alanine endopeptidase YP_130081.1 2160026 D 298386 CDS YP_130082.1 54309062 3125504 complement(2161121..2161870) 1 NC_006370.1 ribonuclease HI 2161870 3125504 PBPRA1876 Photobacterium profundum SS9 ribonuclease HI YP_130082.1 2161121 R 298386 CDS YP_130083.1 54309063 3123530 complement(2162016..2162435) 1 NC_006370.1 hypothetical protein 2162435 3123530 PBPRA1877 Photobacterium profundum SS9 hypothetical protein YP_130083.1 2162016 R 298386 CDS YP_130084.1 54309064 3124328 complement(2162713..2163648) 1 NC_006370.1 lipase/esterase protein 2163648 3124328 PBPRA1878 Photobacterium profundum SS9 lipase/esterase protein YP_130084.1 2162713 R 298386 CDS YP_130085.1 54309065 3123871 complement(2164041..2164400) 1 NC_006370.1 hypothetical protein 2164400 3123871 PBPRA1879 Photobacterium profundum SS9 hypothetical protein YP_130085.1 2164041 R 298386 CDS YP_130086.1 54309066 3123454 complement(2164504..2165229) 1 NC_006370.1 hypothetical protein 2165229 3123454 PBPRA1880 Photobacterium profundum SS9 hypothetical protein YP_130086.1 2164504 R 298386 CDS YP_130087.1 54309067 3124159 complement(2165472..2165798) 1 NC_006370.1 hypothetical protein 2165798 3124159 PBPRA1881 Photobacterium profundum SS9 hypothetical protein YP_130087.1 2165472 R 298386 CDS YP_130088.1 54309068 3123964 complement(2165926..2166447) 1 NC_006370.1 hypothetical protein 2166447 3123964 PBPRA1882 Photobacterium profundum SS9 hypothetical protein YP_130088.1 2165926 R 298386 CDS YP_130089.1 54309069 3122703 2166730..2167983 1 NC_006370.1 membrane-bound lytic murein transglycosylase D 2167983 3122703 PBPRA1883 Photobacterium profundum SS9 membrane-bound lytic murein transglycosylase D YP_130089.1 2166730 D 298386 CDS YP_130090.1 54309070 3122726 complement(2168040..2168441) 1 NC_006370.1 hypothetical protein 2168441 3122726 PBPRA1884 Photobacterium profundum SS9 hypothetical protein YP_130090.1 2168040 R 298386 CDS YP_130091.1 54309071 3123729 2168752..2170317 1 NC_006370.1 hypothetical protein 2170317 3123729 PBPRA1885 Photobacterium profundum SS9 hypothetical protein YP_130091.1 2168752 D 298386 CDS YP_130092.1 54309072 3124205 2170660..2171862 1 NC_006370.1 drug transport transmembrane protein 2171862 3124205 PBPRA1886 Photobacterium profundum SS9 drug transport transmembrane protein YP_130092.1 2170660 D 298386 CDS YP_130093.1 54309073 3123287 complement(2172946..2174991) 1 NC_006370.1 sensor histidine kinase 2174991 3123287 PBPRA1887 Photobacterium profundum SS9 sensor histidine kinase YP_130093.1 2172946 R 298386 CDS YP_130094.1 54309074 3123051 complement(2174988..2176457) 1 NC_006370.1 sigma-54 dependent response regulator 2176457 3123051 PBPRA1888 Photobacterium profundum SS9 sigma-54 dependent response regulator YP_130094.1 2174988 R 298386 CDS YP_130095.1 54309075 3123738 2176748..2177599 1 NC_006370.1 extracellular tungstate binding protein 2177599 3123738 PBPRA1889 Photobacterium profundum SS9 extracellular tungstate binding protein YP_130095.1 2176748 D 298386 CDS YP_130096.1 54309076 3123971 2177649..2178350 1 NC_006370.1 ABC transporter permease 2178350 3123971 PBPRA1890 Photobacterium profundum SS9 ABC transporter permease YP_130096.1 2177649 D 298386 CDS YP_130097.1 54309077 3122919 2178363..2179076 1 NC_006370.1 ABC-type cobalt transport system, ATPase component 2179076 3122919 PBPRA1891 Photobacterium profundum SS9 ABC-type cobalt transport system, ATPase component YP_130097.1 2178363 D 298386 CDS YP_130098.1 54309078 3124760 2179063..2179647 1 NC_006370.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 2179647 mobA 3124760 mobA Photobacterium profundum SS9 molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_130098.1 2179063 D 298386 CDS YP_130099.1 54309079 3124997 2179644..2181440 1 NC_006370.1 bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA 2181440 3124997 PBPRA1893 Photobacterium profundum SS9 bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA YP_130099.1 2179644 D 298386 CDS YP_130100.1 54309080 3124211 2182329..2183045 1 NC_006370.1 hypothetical protein 2183045 3124211 PBPRA1894 Photobacterium profundum SS9 hypothetical protein YP_130100.1 2182329 D 298386 CDS YP_130101.1 54309081 3123832 2183189..2183440 1 NC_006370.1 hypothetical protein 2183440 3123832 PBPRA1895 Photobacterium profundum SS9 hypothetical protein YP_130101.1 2183189 D 298386 CDS YP_130102.1 54309082 3123876 2183355..2184098 1 NC_006370.1 transcriptional regulator 2184098 3123876 PBPRA1896 Photobacterium profundum SS9 transcriptional regulator YP_130102.1 2183355 D 298386 CDS YP_130103.1 54309083 3123039 2184287..2185291 1 NC_006370.1 hypothetical protein 2185291 3123039 PBPRA1897 Photobacterium profundum SS9 hypothetical protein YP_130103.1 2184287 D 298386 CDS YP_130104.1 54309084 3123479 2185335..2186312 1 NC_006370.1 muconate cycloisomerase I 2186312 3123479 PBPRA1898 Photobacterium profundum SS9 muconate cycloisomerase I YP_130104.1 2185335 D 298386 CDS YP_130105.1 54309085 3122556 complement(2186334..2187236) 1 NC_006370.1 hypothetical protein 2187236 3122556 PBPRA1899 Photobacterium profundum SS9 hypothetical protein YP_130105.1 2186334 R 298386 CDS YP_130106.1 54309086 3122226 2187543..2188829 1 NC_006370.1 transposase 2188829 3122226 PBPRA1900 Photobacterium profundum SS9 transposase YP_130106.1 2187543 D 298386 CDS YP_130107.1 54309087 3124892 complement(2188755..2189792) 1 NC_006370.1 Gfo/Idh/MocA family oxidoreductase 2189792 3124892 PBPRA1901 Photobacterium profundum SS9 Gfo/Idh/MocA family oxidoreductase YP_130107.1 2188755 R 298386 CDS YP_130108.1 54309088 3123537 2190008..2190727 1 NC_006370.1 phosphatidylglycerophosphatase B 2190727 3123537 PBPRA1902 Photobacterium profundum SS9 phosphatidylglycerophosphatase B YP_130108.1 2190008 D 298386 CDS YP_130109.1 54309089 3124779 complement(2190879..2191241) 1 NC_006370.1 hypothetical protein 2191241 3124779 PBPRA1903 Photobacterium profundum SS9 hypothetical protein YP_130109.1 2190879 R 298386 CDS YP_130110.1 54309090 3124722 2191579..2192004 1 NC_006370.1 hypothetical protein 2192004 3124722 PBPRA1904 Photobacterium profundum SS9 hypothetical protein YP_130110.1 2191579 D 298386 CDS YP_130111.1 54309091 3123730 2192082..2192525 1 NC_006370.1 metal-binding protein 2192525 3123730 PBPRA1905 Photobacterium profundum SS9 metal-binding protein YP_130111.1 2192082 D 298386 CDS YP_130112.1 54309092 3123605 complement(2192639..2193625) 1 NC_006370.1 hypothetical protein 2193625 3123605 PBPRA1906 Photobacterium profundum SS9 hypothetical protein YP_130112.1 2192639 R 298386 CDS YP_130113.1 54309093 3121975 2193904..2194605 1 NC_006370.1 hypothetical protein 2194605 3121975 PBPRA1907 Photobacterium profundum SS9 hypothetical protein YP_130113.1 2193904 D 298386 CDS YP_130114.1 54309094 3122019 2194890..2196194 1 NC_006370.1 inosine-guanosine kinase 2196194 3122019 PBPRA1908 Photobacterium profundum SS9 inosine-guanosine kinase YP_130114.1 2194890 D 298386 CDS YP_130115.1 54309095 3125205 complement(2196332..2196541) 1 NC_006370.1 cold shock-like protein 2196541 3125205 PBPRA1909 Photobacterium profundum SS9 cold shock-like protein YP_130115.1 2196332 R 298386 CDS YP_130116.1 54309096 3123255 complement(2196902..2197792) 1 NC_006370.1 chemotaxis protein CheV 2197792 3123255 PBPRA1910 Photobacterium profundum SS9 chemotaxis protein CheV YP_130116.1 2196902 R 298386 CDS YP_130117.1 54309097 3122847 2198070..2198240 1 NC_006370.1 hypothetical protein 2198240 3122847 PBPRA1911 Photobacterium profundum SS9 hypothetical protein YP_130117.1 2198070 D 298386 CDS YP_130118.1 54309098 3124781 2198663..2199127 1 NC_006370.1 hypothetical protein 2199127 3124781 PBPRA1912 Photobacterium profundum SS9 hypothetical protein YP_130118.1 2198663 D 298386 CDS YP_130119.1 54309099 3124881 complement(2199532..2199858) 1 NC_006370.1 hypothetical protein 2199858 3124881 PBPRA1913 Photobacterium profundum SS9 hypothetical protein YP_130119.1 2199532 R 298386 CDS YP_130120.1 54309100 3123552 2200024..2200653 1 NC_006370.1 hypothetical protein 2200653 3123552 PBPRA1914 Photobacterium profundum SS9 hypothetical protein YP_130120.1 2200024 D 298386 CDS YP_130121.2 161936308 3125524 complement(2200939..2201514) 1 NC_006370.1 Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein; elongation factor P 2201514 3125524 PBPRA1915 Photobacterium profundum SS9 elongation factor P YP_130121.2 2200939 R 298386 CDS YP_130122.1 54309102 3123365 complement(2201766..2202044) 1 NC_006370.1 hypothetical protein 2202044 3123365 PBPRA1916 Photobacterium profundum SS9 hypothetical protein YP_130122.1 2201766 R 298386 CDS YP_130123.1 54309103 3124263 complement(2202181..2202762) 1 NC_006370.1 hypothetical protein 2202762 3124263 PBPRA1917 Photobacterium profundum SS9 hypothetical protein YP_130123.1 2202181 R 298386 CDS YP_130124.1 54309104 3124095 complement(2202817..2203236) 1 NC_006370.1 glyoxalase family protein 2203236 3124095 PBPRA1918 Photobacterium profundum SS9 glyoxalase family protein YP_130124.1 2202817 R 298386 CDS YP_130125.1 54309105 3123851 2203317..2204678 1 NC_006370.1 hypothetical protein 2204678 3123851 PBPRA1919 Photobacterium profundum SS9 hypothetical protein YP_130125.1 2203317 D 298386 CDS YP_130126.1 54309106 3124078 complement(2204741..2205403) 1 NC_006370.1 hypothetical protein 2205403 3124078 PBPRA1920 Photobacterium profundum SS9 hypothetical protein YP_130126.1 2204741 R 298386 CDS YP_130127.1 54309107 3123645 complement(2205646..2207646) 1 NC_006370.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 2207646 3123645 PBPRA1921 Photobacterium profundum SS9 carboxy-terminal protease YP_130127.1 2205646 R 298386 CDS YP_130128.1 54309108 3123591 complement(2207664..2208308) 1 NC_006370.1 affects solute and DNA transport through an unknown mechanism; solute/DNA competence effector 2208308 3123591 PBPRA1922 Photobacterium profundum SS9 solute/DNA competence effector YP_130128.1 2207664 R 298386 CDS YP_130129.1 54309109 3122488 complement(2208418..2208825) 1 NC_006370.1 hypothetical protein 2208825 3122488 PBPRA1923 Photobacterium profundum SS9 hypothetical protein YP_130129.1 2208418 R 298386 CDS YP_130130.1 54309110 3124183 2208825..2210891 1 NC_006370.1 ABC transporter, ATP-binding protein 2210891 3124183 PBPRA1924 Photobacterium profundum SS9 ABC transporter, ATP-binding protein YP_130130.1 2208825 D 298386 CDS YP_130131.1 54309111 3123205 2210993..2212270 1 NC_006370.1 hypothetical protein 2212270 3123205 PBPRA1925 Photobacterium profundum SS9 hypothetical protein YP_130131.1 2210993 D 298386 CDS YP_130132.1 54309112 3122391 2212251..2214878 1 NC_006370.1 paraquat-inducible protein B 2214878 3122391 PBPRA1926 Photobacterium profundum SS9 paraquat-inducible protein B YP_130132.1 2212251 D 298386 CDS YP_130133.1 54309113 3125214 2215026..2216480 1 NC_006370.1 in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 2216480 yebU 3125214 yebU Photobacterium profundum SS9 rRNA (cytosine-C(5)-)-methyltransferase RsmF YP_130133.1 2215026 D 298386 CDS YP_130134.1 54309114 3124857 2217089..2217454 1 NC_006370.1 hypothetical protein 2217454 3124857 PBPRA1928 Photobacterium profundum SS9 hypothetical protein YP_130134.1 2217089 D 298386 CDS YP_130135.1 54309115 3122975 complement(2217833..2219245) 1 NC_006370.1 xanthine/uracil permease 2219245 3122975 PBPRA1929 Photobacterium profundum SS9 xanthine/uracil permease YP_130135.1 2217833 R 298386 CDS YP_130136.1 54309116 3122926 complement(2219488..2220804) 1 NC_006370.1 Catalyzes the deamination of guanine; guanine deaminase 2220804 3122926 PBPRA1930 Photobacterium profundum SS9 guanine deaminase YP_130136.1 2219488 R 298386 CDS YP_130137.1 54309117 3124499 complement(2221025..2222506) 1 NC_006370.1 xanthine permease 2222506 3124499 PBPRA1931 Photobacterium profundum SS9 xanthine permease YP_130137.1 2221025 R 298386 CDS YP_130138.1 54309118 3122822 complement(2222702..2225572) 1 NC_006370.1 with YgfK and YgfM forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; molybdopterin-containing enzyme; oxidase activity toward hypoxanthine and xanthine can be detected if these substrates are present at high concentration; selenate reductase subunit YgfN 2225572 3122822 PBPRA1932 Photobacterium profundum SS9 selenate reductase subunit YgfN YP_130138.1 2222702 R 298386 CDS YP_130139.1 54309119 3124232 complement(2225575..2226369) 1 NC_006370.1 with YgfK and YgfN forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; YgfM contains a FAD domain; selenate reductase subunit YgfM 2226369 3124232 PBPRA1933 Photobacterium profundum SS9 selenate reductase subunit YgfM YP_130139.1 2225575 R 298386 CDS YP_130140.1 54309120 3122375 complement(2227080..2228687) 1 NC_006370.1 BCCT family transporter 2228687 3122375 PBPRA1934 Photobacterium profundum SS9 BCCT family transporter YP_130140.1 2227080 R 298386 CDS YP_130141.1 54309121 3124672 2229092..2230144 1 NC_006370.1 transposase 2230144 3124672 PBPRA1935 Photobacterium profundum SS9 transposase YP_130141.1 2229092 D 298386 CDS YP_130142.1 54309122 3125184 complement(2230616..2231257) 1 NC_006370.1 ABC transporter ATP-binding protein 2231257 3125184 PBPRA1936 Photobacterium profundum SS9 ABC transporter ATP-binding protein YP_130142.1 2230616 R 298386 CDS YP_130143.1 54309123 3122670 2231630..2233195 1 NC_006370.1 hypothetical protein 2233195 3122670 PBPRA1937 Photobacterium profundum SS9 hypothetical protein YP_130143.1 2231630 D 298386 CDS YP_130144.1 54309124 3122442 2233577..2234242 1 NC_006370.1 short-chain dehydrogenase 2234242 3122442 PBPRA1938 Photobacterium profundum SS9 short-chain dehydrogenase YP_130144.1 2233577 D 298386 CDS YP_130145.1 54309125 3122463 complement(2234492..2235391) 1 NC_006370.1 dehydrogenase 2235391 3122463 PBPRA1939 Photobacterium profundum SS9 dehydrogenase YP_130145.1 2234492 R 298386 CDS YP_130146.1 54309126 3124546 complement(2235385..2235909) 1 NC_006370.1 aerobic carbon monoxide dehydrogenase 2235909 3124546 PBPRA1940 Photobacterium profundum SS9 aerobic carbon monoxide dehydrogenase YP_130146.1 2235385 R 298386 CDS YP_130147.1 54309127 3124467 complement(2235899..2238079) 1 NC_006370.1 xanthine dehydrogenase 2238079 3124467 PBPRA1941 Photobacterium profundum SS9 xanthine dehydrogenase YP_130147.1 2235899 R 298386 CDS YP_130148.1 54309128 3123349 complement(2238094..2239422) 1 NC_006370.1 in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS; chlorohydrolase/aminohydrolase 2239422 3123349 PBPRA1942 Photobacterium profundum SS9 chlorohydrolase/aminohydrolase YP_130148.1 2238094 R 298386 CDS YP_130149.1 54309129 3122176 complement(2239438..2242581) 1 NC_006370.1 with YgfM and YgfN forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; YgfK mutants are unable to reduce selenate; involved in purine salvage process; seems to act as an oxidoreductase, but sequence similarity suggests it is a dihydrothymine dehydrogenase; selenate reductase subunit YgfK 2242581 3122176 PBPRA1943 Photobacterium profundum SS9 selenate reductase subunit YgfK YP_130149.1 2239438 R 298386 CDS YP_130150.1 54309130 3122454 complement(2243117..2243365) 1 NC_006370.1 hypothetical protein 2243365 3122454 PBPRA1944 Photobacterium profundum SS9 hypothetical protein YP_130150.1 2243117 R 298386 CDS YP_130151.1 54309131 3121976 2243710..2244486 1 NC_006370.1 hypothetical protein 2244486 3121976 PBPRA1945 Photobacterium profundum SS9 hypothetical protein YP_130151.1 2243710 D 298386 CDS YP_130152.1 54309132 3124221 complement(2245073..2245954) 1 NC_006370.1 hypothetical protein 2245954 3124221 PBPRA1946 Photobacterium profundum SS9 hypothetical protein YP_130152.1 2245073 R 298386 CDS YP_130153.1 54309133 3125218 complement(2246044..2246340) 1 NC_006370.1 hypothetical protein 2246340 3125218 PBPRA1947 Photobacterium profundum SS9 hypothetical protein YP_130153.1 2246044 R 298386 CDS YP_130154.1 54309134 3122081 2246469..2246789 1 NC_006370.1 hypothetical protein 2246789 3122081 PBPRA1948 Photobacterium profundum SS9 hypothetical protein YP_130154.1 2246469 D 298386 CDS YP_130155.1 54309135 3124494 complement(2247191..2247913) 1 NC_006370.1 pseudouridylate synthase 2247913 3124494 PBPRA1949 Photobacterium profundum SS9 pseudouridylate synthase YP_130155.1 2247191 R 298386 CDS YP_130156.1 54309136 3124196 complement(2248078..2248500) 1 NC_006370.1 acetyltransferase 2248500 3124196 PBPRA1950 Photobacterium profundum SS9 acetyltransferase YP_130156.1 2248078 R 298386 CDS YP_130157.1 54309137 3124549 complement(2248632..2249291) 1 NC_006370.1 haemagglutinin associated protein 2249291 3124549 PBPRA1951 Photobacterium profundum SS9 haemagglutinin associated protein YP_130157.1 2248632 R 298386 CDS YP_130158.1 54309138 3124251 complement(2249441..2249962) 1 NC_006370.1 hypothetical protein 2249962 3124251 PBPRA1952 Photobacterium profundum SS9 hypothetical protein YP_130158.1 2249441 R 298386 CDS YP_130159.1 54309139 3124388 complement(2250123..2250476) 1 NC_006370.1 hypothetical protein 2250476 3124388 PBPRA1953 Photobacterium profundum SS9 hypothetical protein YP_130159.1 2250123 R 298386 CDS YP_130160.1 54309140 3122416 complement(2250546..2251457) 1 NC_006370.1 hypothetical protein 2251457 3122416 PBPRA1954 Photobacterium profundum SS9 hypothetical protein YP_130160.1 2250546 R 298386 CDS YP_130161.1 54309141 3122583 complement(2251464..2252195) 1 NC_006370.1 Tn5 transposase 2252195 3122583 PBPRA1955 Photobacterium profundum SS9 Tn5 transposase YP_130161.1 2251464 R 298386 CDS YP_130162.1 54309142 3122933 complement(2252343..2253908) 1 NC_006370.1 hypothetical protein 2253908 3122933 PBPRA1956 Photobacterium profundum SS9 hypothetical protein YP_130162.1 2252343 R 298386 CDS YP_130163.1 54309143 3122231 complement(2254062..2254433) 1 NC_006370.1 transposase 2254433 3122231 PBPRA1957 Photobacterium profundum SS9 transposase YP_130163.1 2254062 R 298386 CDS YP_130164.1 54309144 3122319 2254826..2255419 1 NC_006370.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 2255419 acpD 3122319 acpD Photobacterium profundum SS9 azoreductase YP_130164.1 2254826 D 298386 CDS YP_130165.1 54309145 3122689 2255679..2256155 1 NC_006370.1 hypothetical protein 2256155 3122689 PBPRA1959 Photobacterium profundum SS9 hypothetical protein YP_130165.1 2255679 D 298386 CDS YP_130166.1 54309146 3124907 complement(2256234..2257598) 1 NC_006370.1 hypothetical protein 2257598 3124907 PBPRA1960 Photobacterium profundum SS9 hypothetical protein YP_130166.1 2256234 R 298386 CDS YP_130167.1 54309147 3125478 complement(2257793..2258098) 1 NC_006370.1 hypothetical protein 2258098 3125478 PBPRA1961 Photobacterium profundum SS9 hypothetical protein YP_130167.1 2257793 R 298386 CDS YP_130168.1 54309148 3125185 2258626..2258874 1 NC_006370.1 cold shock-like protein cspG 2258874 3125185 PBPRA1962 Photobacterium profundum SS9 cold shock-like protein cspG YP_130168.1 2258626 D 298386 CDS YP_130169.1 54309149 3122143 2259301..2259510 1 NC_006370.1 cold shock-like protein 2259510 3122143 PBPRA1963 Photobacterium profundum SS9 cold shock-like protein YP_130169.1 2259301 D 298386 CDS YP_130170.1 54309150 3122596 complement(2259608..2260534) 1 NC_006370.1 D-alanine-D-alanine ligase B 2260534 3122596 PBPRA1964 Photobacterium profundum SS9 D-alanine-D-alanine ligase B YP_130170.1 2259608 R 298386 CDS YP_130171.1 54309151 3122772 complement(2260798..2261427) 1 NC_006370.1 hypothetical protein 2261427 3122772 PBPRA1965 Photobacterium profundum SS9 hypothetical protein YP_130171.1 2260798 R 298386 CDS YP_130172.1 54309152 3124194 complement(2261526..2262041) 1 NC_006370.1 hypothetical protein 2262041 3124194 PBPRA1966 Photobacterium profundum SS9 hypothetical protein YP_130172.1 2261526 R 298386 CDS YP_130173.1 54309153 3124314 complement(2262166..2262549) 1 NC_006370.1 carboxymuconolactone decarboxylase family protein 2262549 3124314 PBPRA1967 Photobacterium profundum SS9 carboxymuconolactone decarboxylase family protein YP_130173.1 2262166 R 298386 CDS YP_130174.1 54309154 3125172 complement(2262778..2265927) 1 NC_006370.1 hypothetical protein 2265927 3125172 PBPRA1968 Photobacterium profundum SS9 hypothetical protein YP_130174.1 2262778 R 298386 CDS YP_130175.1 54309155 3122123 2266455..2266715 1 NC_006370.1 hypothetical protein 2266715 3122123 PBPRA1969 Photobacterium profundum SS9 hypothetical protein YP_130175.1 2266455 D 298386 CDS YP_130176.1 54309156 3125453 2266964..2268826 1 NC_006370.1 hypothetical protein 2268826 3125453 PBPRA1970 Photobacterium profundum SS9 hypothetical protein YP_130176.1 2266964 D 298386 CDS YP_130177.1 54309157 3122066 complement(2269320..2269799) 1 NC_006370.1 acetyltransferase 2269799 3122066 PBPRA1972 Photobacterium profundum SS9 acetyltransferase YP_130177.1 2269320 R 298386 CDS YP_130178.1 54309158 3121956 2270743..2272308 1 NC_006370.1 hypothetical protein 2272308 3121956 PBPRA1973 Photobacterium profundum SS9 hypothetical protein YP_130178.1 2270743 D 298386 CDS YP_130179.1 54309159 3122243 complement(2272318..2272767) 1 NC_006370.1 hypothetical protein 2272767 3122243 PBPRA1974 Photobacterium profundum SS9 hypothetical protein YP_130179.1 2272318 R 298386 CDS YP_130180.1 54309160 3125375 complement(2273096..2273701) 1 NC_006370.1 oxidoreductase 2273701 3125375 PBPRA1975 Photobacterium profundum SS9 oxidoreductase YP_130180.1 2273096 R 298386 CDS YP_130181.1 54309161 3125469 complement(2273725..2274114) 1 NC_006370.1 transcriptional regulator 2274114 3125469 PBPRA1976 Photobacterium profundum SS9 transcriptional regulator YP_130181.1 2273725 R 298386 CDS YP_130182.1 54309162 3122479 complement(2274320..2274607) 1 NC_006370.1 hypothetical protein 2274607 3122479 PBPRA1977 Photobacterium profundum SS9 hypothetical protein YP_130182.1 2274320 R 298386 CDS YP_130183.1 54309163 3122731 complement(2274730..2275164) 1 NC_006370.1 transposase 2275164 3122731 PBPRA1978 Photobacterium profundum SS9 transposase YP_130183.1 2274730 R 298386 CDS YP_130184.1 54309164 3122546 complement(2275237..2275905) 1 NC_006370.1 lysophospholipase 2275905 3122546 PBPRA1979 Photobacterium profundum SS9 lysophospholipase YP_130184.1 2275237 R 298386 CDS YP_130185.1 54309165 3125279 2276061..2276507 1 NC_006370.1 hypothetical protein 2276507 3125279 PBPRA1980 Photobacterium profundum SS9 hypothetical protein YP_130185.1 2276061 D 298386 CDS YP_130186.1 54309166 3122205 complement(2276625..2276984) 1 NC_006370.1 hypothetical protein 2276984 3122205 PBPRA1981 Photobacterium profundum SS9 hypothetical protein YP_130186.1 2276625 R 298386 CDS YP_130187.1 54309167 3125248 complement(2277451..2278329) 1 NC_006370.1 hypothetical protein 2278329 3125248 PBPRA1982 Photobacterium profundum SS9 hypothetical protein YP_130187.1 2277451 R 298386 CDS YP_130188.1 54309168 3123828 complement(2278348..2278659) 1 NC_006370.1 transcriptional regulator 2278659 3123828 PBPRA1983 Photobacterium profundum SS9 transcriptional regulator YP_130188.1 2278348 R 298386 CDS YP_130189.1 54309169 3122762 complement(2279120..2279566) 1 NC_006370.1 hypothetical protein 2279566 3122762 PBPRA1984 Photobacterium profundum SS9 hypothetical protein YP_130189.1 2279120 R 298386 CDS YP_130190.1 54309170 3124891 complement(2279625..2281223) 1 NC_006370.1 protein yqeB 2281223 3124891 PBPRA1985 Photobacterium profundum SS9 protein yqeB YP_130190.1 2279625 R 298386 CDS YP_130191.1 54309171 3125288 complement(2281263..2282165) 1 NC_006370.1 hypothetical protein 2282165 3125288 PBPRA1986 Photobacterium profundum SS9 hypothetical protein YP_130191.1 2281263 R 298386 CDS YP_130192.1 54309172 3125456 2282226..2282801 1 NC_006370.1 hypothetical protein 2282801 3125456 PBPRA1987 Photobacterium profundum SS9 hypothetical protein YP_130192.1 2282226 D 298386 CDS YP_130193.1 54309173 3125310 complement(2282995..2286639) 1 NC_006370.1 pyruvate oxidoreductase 2286639 3125310 PBPRA1988 Photobacterium profundum SS9 pyruvate oxidoreductase YP_130193.1 2282995 R 298386 CDS YP_130194.1 54309174 3125032 complement(2286649..2288259) 1 NC_006370.1 unknown function; glutamate synthase (NADPH) small subunit 2288259 3125032 PBPRA1989 Photobacterium profundum SS9 glutamate synthase (NADPH) small subunit YP_130194.1 2286649 R 298386 CDS YP_130195.1 54309175 3122715 complement(2288439..2289341) 1 NC_006370.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 2289341 3122715 PBPRA1990 Photobacterium profundum SS9 carbamate kinase YP_130195.1 2288439 R 298386 CDS YP_130196.1 54309176 3125235 complement(2289385..2290881) 1 NC_006370.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase 2290881 3125235 PBPRA1991 Photobacterium profundum SS9 phenylhydantoinase YP_130196.1 2289385 R 298386 CDS YP_130197.1 54309177 3125486 complement(2291103..2292320) 1 NC_006370.1 Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases; peptidase 2292320 3125486 PBPRA1992 Photobacterium profundum SS9 peptidase YP_130197.1 2291103 R 298386 CDS YP_130198.1 54309178 3125001 complement(2292556..2293758) 1 NC_006370.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 2293758 3125001 PBPRA1993 Photobacterium profundum SS9 diaminopropionate ammonia-lyase YP_130198.1 2292556 R 298386 CDS YP_130199.1 54309179 3123010 complement(2293833..2295020) 1 NC_006370.1 catalyzes the formation of L-citruline from L-ornithine and carbamoylphosphate; aspartate/ornithine carbamoyltransferase 2295020 3123010 PBPRA1994 Photobacterium profundum SS9 aspartate/ornithine carbamoyltransferase YP_130199.1 2293833 R 298386 CDS YP_130200.1 54309180 3125284 2295444..2297201 1 NC_006370.1 transcriptional regulator 2297201 3125284 PBPRA1995 Photobacterium profundum SS9 transcriptional regulator YP_130200.1 2295444 D 298386 CDS YP_130201.1 54309181 3124949 complement(2297663..2297911) 1 NC_006370.1 hypothetical protein 2297911 3124949 PBPRA1996 Photobacterium profundum SS9 hypothetical protein YP_130201.1 2297663 R 298386 CDS YP_130202.2 229557967 3122794 2297827..2299515 1 NC_006370.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 2299515 3122794 PBPRA1997 Photobacterium profundum SS9 malate dehydrogenase YP_130202.2 2297827 D 298386 CDS YP_130203.1 54309183 3124461 2299806..2300507 1 NC_006370.1 SanA protein 2300507 3124461 PBPRA1998 Photobacterium profundum SS9 SanA protein YP_130203.1 2299806 D 298386 CDS YP_130204.1 54309184 3123136 2301349..2302719 1 NC_006370.1 NadC family transporter 2302719 3123136 PBPRA1999 Photobacterium profundum SS9 NadC family transporter YP_130204.1 2301349 D 298386 CDS YP_130205.1 54309185 3125142 complement(2302821..2303804) 1 NC_006370.1 oxidoreductase ygjR 2303804 3125142 PBPRA2000 Photobacterium profundum SS9 oxidoreductase ygjR YP_130205.1 2302821 R 298386 CDS YP_130206.1 54309186 3123683 2304055..2305131 1 NC_006370.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis; 3-oxoacyl-ACP synthase 2305131 3123683 PBPRA2001 Photobacterium profundum SS9 3-oxoacyl-ACP synthase YP_130206.1 2304055 D 298386 CDS YP_130207.1 54309187 3125426 2305594..2306547 1 NC_006370.1 transmembrane transportprotein 2306547 3125426 PBPRA2002 Photobacterium profundum SS9 transmembrane transportprotein YP_130207.1 2305594 D 298386 CDS YP_130208.1 54309188 3121959 2306984..2308549 1 NC_006370.1 methyl-accepting chemotaxis protein 2308549 3121959 PBPRA2003 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_130208.1 2306984 D 298386 CDS YP_130209.1 54309189 3124402 complement(2308683..2310419) 1 NC_006370.1 amidase 2310419 3124402 PBPRA2004 Photobacterium profundum SS9 amidase YP_130209.1 2308683 R 298386 CDS YP_130210.1 54309190 3123629 complement(2310772..2311089) 1 NC_006370.1 hemolysin 2311089 3123629 PBPRA2005 Photobacterium profundum SS9 hemolysin YP_130210.1 2310772 R 298386 CDS YP_130211.1 54309191 3123653 2311163..2312752 1 NC_006370.1 hypothetical protein 2312752 3123653 PBPRA2006 Photobacterium profundum SS9 hypothetical protein YP_130211.1 2311163 D 298386 CDS YP_130212.1 54309192 3123804 2312831..2313787 1 NC_006370.1 pyruvate formate lyase activating enzyme 2313787 3123804 PBPRA2007 Photobacterium profundum SS9 pyruvate formate lyase activating enzyme YP_130212.1 2312831 D 298386 CDS YP_130213.1 54309193 3122358 complement(2313857..2314786) 1 NC_006370.1 LysR family transcriptional regulator 2314786 3122358 PBPRA2008 Photobacterium profundum SS9 LysR family transcriptional regulator YP_130213.1 2313857 R 298386 CDS YP_130214.1 54309194 3123025 complement(2314896..2315549) 1 NC_006370.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 2315549 folE 3123025 folE Photobacterium profundum SS9 GTP cyclohydrolase I YP_130214.1 2314896 R 298386 CDS YP_130215.1 54309195 3123372 2315857..2317092 1 NC_006370.1 molybdopterin biosynthesis protein MoeA 2317092 3123372 PBPRA2010 Photobacterium profundum SS9 molybdopterin biosynthesis protein MoeA YP_130215.1 2315857 D 298386 CDS YP_130216.1 54309196 3123173 2317264..2318010 1 NC_006370.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 2318010 3123173 PBPRA2011 Photobacterium profundum SS9 molybdopterin biosynthesis protein MoeB YP_130216.1 2317264 D 298386 CDS YP_130217.1 54309197 3123589 complement(2318112..2319320) 1 NC_006370.1 NupC, nucleoside permease 2319320 3123589 PBPRA2012 Photobacterium profundum SS9 NupC, nucleoside permease YP_130217.1 2318112 R 298386 CDS YP_130218.1 54309198 3122780 complement(2319642..2320895) 1 NC_006370.1 hypothetical protein 2320895 3122780 PBPRA2013 Photobacterium profundum SS9 hypothetical protein YP_130218.1 2319642 R 298386 CDS YP_130219.1 54309199 3124243 complement(2321156..2322787) 1 NC_006370.1 oligopeptide ABC transporter periplasmic oligopeptide-binding protein 2322787 3124243 PBPRA2014 Photobacterium profundum SS9 oligopeptide ABC transporter periplasmic oligopeptide-binding protein YP_130219.1 2321156 R 298386 CDS YP_130220.1 54309200 3124235 complement(2323054..2323896) 1 NC_006370.1 hypothetical protein 2323896 3124235 PBPRA2015 Photobacterium profundum SS9 hypothetical protein YP_130220.1 2323054 R 298386 CDS YP_130221.1 54309201 3124151 2324174..2325535 1 NC_006370.1 hypothetical protein 2325535 3124151 PBPRA2016 Photobacterium profundum SS9 hypothetical protein YP_130221.1 2324174 D 298386 CDS YP_130222.1 54309202 3123910 2325694..2326746 1 NC_006370.1 hypothetical protein 2326746 3123910 PBPRA2017 Photobacterium profundum SS9 hypothetical protein YP_130222.1 2325694 D 298386 CDS YP_130223.1 54309203 3123726 2327447..2329540 1 NC_006370.1 methyl-accepting chemotaxisprotein 2329540 3123726 PBPRA2018 Photobacterium profundum SS9 methyl-accepting chemotaxisprotein YP_130223.1 2327447 D 298386 CDS YP_130224.1 54309204 3122354 complement(2330027..2330371) 1 NC_006370.1 hypothetical protein 2330371 3122354 PBPRA2019 Photobacterium profundum SS9 hypothetical protein YP_130224.1 2330027 R 298386 CDS YP_130225.1 54309205 3123880 2330713..2332281 1 NC_006370.1 hypothetical protein 2332281 3123880 PBPRA2020 Photobacterium profundum SS9 hypothetical protein YP_130225.1 2330713 D 298386 CDS YP_130226.1 54309206 3123760 2332560..2333576 1 NC_006370.1 hypothetical protein 2333576 3123760 PBPRA2021 Photobacterium profundum SS9 hypothetical protein YP_130226.1 2332560 D 298386 CDS YP_130227.1 54309207 3123001 complement(2333736..2334641) 1 NC_006370.1 hypothetical protein 2334641 3123001 PBPRA2022 Photobacterium profundum SS9 hypothetical protein YP_130227.1 2333736 R 298386 CDS YP_130228.1 54309208 3122576 2335282..2336337 1 NC_006370.1 tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase 2336337 3122576 PBPRA2023 Photobacterium profundum SS9 phospho-2-dehydro-3-deoxyheptonate aldolase YP_130228.1 2335282 D 298386 CDS YP_130229.1 54309209 3123334 2336853..2337338 1 NC_006370.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 2337338 3123334 PBPRA2024 Photobacterium profundum SS9 nucleotide-binding protein YP_130229.1 2336853 D 298386 CDS YP_130230.1 54309210 3122597 2337626..2338291 1 NC_006370.1 hypothetical protein 2338291 3122597 PBPRA2025 Photobacterium profundum SS9 hypothetical protein YP_130230.1 2337626 D 298386 CDS YP_130231.1 54309211 3122172 2338443..2339288 1 NC_006370.1 pirin 2339288 3122172 PBPRA2026 Photobacterium profundum SS9 pirin YP_130231.1 2338443 D 298386 CDS YP_130232.1 54309212 3122131 complement(2339646..2340578) 1 NC_006370.1 lipid A biosynthesis lauroylacyltransferase 2340578 3122131 PBPRA2027 Photobacterium profundum SS9 lipid A biosynthesis lauroylacyltransferase YP_130232.1 2339646 R 298386 CDS YP_130233.1 54309213 3122124 complement(2340889..2341470) 1 NC_006370.1 cytochrome c-type protein NapC 2341470 3122124 PBPRA2028 Photobacterium profundum SS9 cytochrome c-type protein NapC YP_130233.1 2340889 R 298386 CDS YP_130234.1 54309214 3122254 complement(2341484..2341933) 1 NC_006370.1 periplasmic nitrate reductase small subunit precursor 2341933 3122254 PBPRA2029 Photobacterium profundum SS9 periplasmic nitrate reductase small subunit precursor YP_130234.1 2341484 R 298386 CDS YP_130235.1 54309215 3122235 complement(2341958..2344474) 1 NC_006370.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 2344474 3122235 PBPRA2030 Photobacterium profundum SS9 nitrate reductase catalytic subunit YP_130235.1 2341958 R 298386 CDS YP_130236.1 54309216 3124561 2344937..2345230 1 NC_006370.1 hypothetical protein 2345230 3124561 PBPRA2031 Photobacterium profundum SS9 hypothetical protein YP_130236.1 2344937 D 298386 CDS YP_130237.1 54309217 3124566 2345331..2346413 1 NC_006370.1 hypothetical protein 2346413 3124566 PBPRA2032 Photobacterium profundum SS9 hypothetical protein YP_130237.1 2345331 D 298386 CDS YP_130238.1 54309218 3124480 complement(2346568..2346921) 1 NC_006370.1 hypothetical protein 2346921 3124480 PBPRA2033 Photobacterium profundum SS9 hypothetical protein YP_130238.1 2346568 R 298386 CDS YP_130239.1 54309219 3124321 2347409..2348080 1 NC_006370.1 hypothetical protein 2348080 3124321 PBPRA2034 Photobacterium profundum SS9 hypothetical protein YP_130239.1 2347409 D 298386 CDS YP_130240.1 54309220 3124773 2348080..2349915 1 NC_006370.1 molecular chaperone DnaK 2349915 3124773 PBPRA2035 Photobacterium profundum SS9 molecular chaperone DnaK YP_130240.1 2348080 D 298386 CDS YP_130241.1 54309221 3124789 2350117..2353095 1 NC_006370.1 molecular chaperone DnaK 2353095 3124789 PBPRA2036 Photobacterium profundum SS9 molecular chaperone DnaK YP_130241.1 2350117 D 298386 CDS YP_130242.1 54309222 3124397 complement(2353689..2354546) 1 NC_006370.1 ABC transporter 2354546 3124397 PBPRA2037 Photobacterium profundum SS9 ABC transporter YP_130242.1 2353689 R 298386 CDS YP_130243.1 54309223 3124259 complement(2354543..2355400) 1 NC_006370.1 ABC transporter ATP-binding protein 2355400 3124259 PBPRA2038 Photobacterium profundum SS9 ABC transporter ATP-binding protein YP_130243.1 2354543 R 298386 CDS YP_130244.1 54309224 3124257 complement(2355384..2355767) 1 NC_006370.1 GntR family transcriptional regulator 2355767 3124257 PBPRA2039 Photobacterium profundum SS9 GntR family transcriptional regulator YP_130244.1 2355384 R 298386 CDS YP_130245.1 54309225 3124362 complement(2356253..2356621) 1 NC_006370.1 hypothetical protein 2356621 3124362 PBPRA2040 Photobacterium profundum SS9 hypothetical protein YP_130245.1 2356253 R 298386 CDS YP_130246.1 54309226 3124146 2357563..2358084 1 NC_006370.1 transposase 2358084 3124146 PBPRA2041 Photobacterium profundum SS9 transposase YP_130246.1 2357563 D 298386 CDS YP_130247.1 54309227 3124497 complement(2358365..2358715) 1 NC_006370.1 transposase 2358715 3124497 PBPRA2042 Photobacterium profundum SS9 transposase YP_130247.1 2358365 R 298386 CDS YP_130248.1 54309228 3124508 complement(2358813..2359247) 1 NC_006370.1 transposase 2359247 3124508 PBPRA2043 Photobacterium profundum SS9 transposase YP_130248.1 2358813 R 298386 CDS YP_130249.1 54309229 3123842 2361060..2361923 1 NC_006370.1 transposase 2361923 3123842 PBPRA2045 Photobacterium profundum SS9 transposase YP_130249.1 2361060 D 298386 CDS YP_130250.1 54309230 3123016 2361998..2362609 1 NC_006370.1 ribonuclease 2362609 3123016 PBPRA2046 Photobacterium profundum SS9 ribonuclease YP_130250.1 2361998 D 298386 CDS YP_130251.1 54309231 3124867 2363691..2365160 1 NC_006370.1 sodium:alanine symporter family protein 2365160 3124867 PBPRA2047 Photobacterium profundum SS9 sodium:alanine symporter family protein YP_130251.1 2363691 D 298386 CDS YP_130252.1 54309232 3124603 2365430..2365792 1 NC_006370.1 hypothetical protein 2365792 3124603 PBPRA2048 Photobacterium profundum SS9 hypothetical protein YP_130252.1 2365430 D 298386 CDS YP_130253.1 54309233 3124244 complement(2365918..2366199) 1 NC_006370.1 hypothetical protein 2366199 3124244 PBPRA2049 Photobacterium profundum SS9 hypothetical protein YP_130253.1 2365918 R 298386 CDS YP_130254.1 54309234 3124258 2366486..2366878 1 NC_006370.1 hypothetical protein 2366878 3124258 PBPRA2050 Photobacterium profundum SS9 hypothetical protein YP_130254.1 2366486 D 298386 CDS YP_130255.1 54309235 3124462 complement(2366970..2367623) 1 NC_006370.1 homoserine/homoserine lactoneefflux protein 2367623 3124462 PBPRA2051 Photobacterium profundum SS9 homoserine/homoserine lactoneefflux protein YP_130255.1 2366970 R 298386 CDS YP_130256.1 54309236 3123900 2368116..2368451 1 NC_006370.1 PTS system, cellobiose-specific IIB component 2368451 3123900 PBPRA2052 Photobacterium profundum SS9 PTS system, cellobiose-specific IIB component YP_130256.1 2368116 D 298386 CDS YP_130257.1 54309237 3124859 2368510..2368791 1 NC_006370.1 hypothetical protein 2368791 3124859 PBPRA2053 Photobacterium profundum SS9 hypothetical protein YP_130257.1 2368510 D 298386 CDS YP_130258.1 54309238 3125412 complement(2368927..2370123) 1 NC_006370.1 transposase 2370123 3125412 PBPRA2054 Photobacterium profundum SS9 transposase YP_130258.1 2368927 R 298386 CDS YP_130259.1 54309239 3123844 2370645..2372552 1 NC_006370.1 PTS system, fructose-specific IIABC component 2372552 3123844 PBPRA2055 Photobacterium profundum SS9 PTS system, fructose-specific IIABC component YP_130259.1 2370645 D 298386 CDS YP_130260.1 54309240 3123688 complement(2372675..2373121) 1 NC_006370.1 hypothetical protein 2373121 3123688 PBPRA2056 Photobacterium profundum SS9 hypothetical protein YP_130260.1 2372675 R 298386 CDS YP_130261.1 54309241 3123855 complement(2373190..2373669) 1 NC_006370.1 hypothetical protein 2373669 3123855 PBPRA2057 Photobacterium profundum SS9 hypothetical protein YP_130261.1 2373190 R 298386 CDS YP_130262.1 54309242 3125008 2373817..2374479 1 NC_006370.1 b-type cytochrome 2374479 3125008 PBPRA2058 Photobacterium profundum SS9 b-type cytochrome YP_130262.1 2373817 D 298386 CDS YP_130263.1 54309243 3124142 2374572..2375006 1 NC_006370.1 transcriptional regulator 2375006 3124142 PBPRA2059 Photobacterium profundum SS9 transcriptional regulator YP_130263.1 2374572 D 298386 CDS YP_130264.1 54309244 3124560 2375163..2375528 1 NC_006370.1 hypothetical protein 2375528 3124560 PBPRA2060 Photobacterium profundum SS9 hypothetical protein YP_130264.1 2375163 D 298386 CDS YP_130265.1 54309245 3124343 2375691..2376218 1 NC_006370.1 polypeptide deformylase 2376218 3124343 PBPRA2061 Photobacterium profundum SS9 polypeptide deformylase YP_130265.1 2375691 D 298386 CDS YP_130266.1 54309246 3124848 2376433..2377365 1 NC_006370.1 Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1 2377365 rihA 3124848 rihA Photobacterium profundum SS9 ribonucleoside hydrolase 1 YP_130266.1 2376433 D 298386 CDS YP_130267.1 54309247 3124889 complement(2377481..2378026) 1 NC_006370.1 hypothetical protein 2378026 3124889 PBPRA2063 Photobacterium profundum SS9 hypothetical protein YP_130267.1 2377481 R 298386 CDS YP_130268.1 54309248 3125011 2378565..2379476 1 NC_006370.1 hypothetical protein 2379476 3125011 PBPRA2064 Photobacterium profundum SS9 hypothetical protein YP_130268.1 2378565 D 298386 CDS YP_130269.1 54309249 3125432 complement(2379557..2379886) 1 NC_006370.1 hypothetical protein 2379886 3125432 PBPRA2065 Photobacterium profundum SS9 hypothetical protein YP_130269.1 2379557 R 298386 CDS YP_130270.1 54309250 3122552 complement(2380038..2380433) 1 NC_006370.1 hypothetical protein 2380433 3122552 PBPRA2066 Photobacterium profundum SS9 hypothetical protein YP_130270.1 2380038 R 298386 CDS YP_130271.1 54309251 3122629 complement(2380643..2381257) 1 NC_006370.1 phosphatase/phosphohexomutase 2381257 3122629 PBPRA2067 Photobacterium profundum SS9 phosphatase/phosphohexomutase YP_130271.1 2380643 R 298386 CDS YP_130272.1 54309252 3122811 complement(2381528..2382424) 1 NC_006370.1 hypothetical protein 2382424 3122811 PBPRA2068 Photobacterium profundum SS9 hypothetical protein YP_130272.1 2381528 R 298386 CDS YP_130273.1 54309253 3123361 complement(2382433..2385843) 1 NC_006370.1 hypothetical protein 2385843 3123361 PBPRA2069 Photobacterium profundum SS9 hypothetical protein YP_130273.1 2382433 R 298386 CDS YP_130274.1 54309254 3123259 complement(2385836..2386729) 1 NC_006370.1 hypothetical protein 2386729 3123259 PBPRA2070 Photobacterium profundum SS9 hypothetical protein YP_130274.1 2385836 R 298386 CDS YP_130275.1 54309255 3123567 2386813..2387292 1 NC_006370.1 hypothetical protein 2387292 3123567 PBPRA2071 Photobacterium profundum SS9 hypothetical protein YP_130275.1 2386813 D 298386 CDS YP_130276.1 54309256 3123917 complement(2387490..2387813) 1 NC_006370.1 hypothetical protein 2387813 3123917 PBPRA2072 Photobacterium profundum SS9 hypothetical protein YP_130276.1 2387490 R 298386 CDS YP_130277.1 54309257 3122617 2387812..2388540 1 NC_006370.1 With ArtMQJI transports arginine across the inner membrane; arginine transporter ATP-binding subunit 2388540 artP 3122617 artP Photobacterium profundum SS9 arginine transporter ATP-binding subunit YP_130277.1 2387812 D 298386 CDS YP_130278.1 54309258 3122200 2388682..2389335 1 NC_006370.1 ABC-type amino acid transport/signaltransduction system 2389335 3122200 PBPRA2074 Photobacterium profundum SS9 ABC-type amino acid transport/signaltransduction system YP_130278.1 2388682 D 298386 CDS YP_130279.1 54309259 3124337 2389337..2390026 1 NC_006370.1 with ArtPMJI transports arginine across the inner membrane; arginine transporter permease subunit ArtQ 2390026 3124337 PBPRA2075 Photobacterium profundum SS9 arginine transporter permease subunit ArtQ YP_130279.1 2389337 D 298386 CDS YP_130280.1 54309260 3122554 2390023..2390694 1 NC_006370.1 with ArtPQJI acts to transport arginine across the inner membrane; arginine transporter permease subunit ArtM 2390694 artM 3122554 artM Photobacterium profundum SS9 arginine transporter permease subunit ArtM YP_130280.1 2390023 D 298386 CDS YP_130281.1 54309261 3122543 2391024..2393027 1 NC_006370.1 methyl-accepting chemotaxis protein 2393027 3122543 PBPRA2077 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_130281.1 2391024 D 298386 CDS YP_130282.1 54309262 3124387 2393345..2394367 1 NC_006370.1 LacI family transcriptional regulator 2394367 3124387 PBPRA2078 Photobacterium profundum SS9 LacI family transcriptional regulator YP_130282.1 2393345 D 298386 CDS YP_130283.2 161936307 3123492 complement(2394450..2395535) 1 NC_006370.1 catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose; aldose 1-epimerase 2395535 galM 3123492 galM Photobacterium profundum SS9 aldose 1-epimerase YP_130283.2 2394450 R 298386 CDS YP_130284.1 54309264 3124176 complement(2395560..2396762) 1 NC_006370.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase 2396762 3124176 PBPRA2080 Photobacterium profundum SS9 galactokinase YP_130284.1 2395560 R 298386 CDS YP_130285.1 54309265 3124578 complement(2396815..2397912) 1 NC_006370.1 catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; galactose-1-phosphate uridylyltransferase 2397912 3124578 PBPRA2081 Photobacterium profundum SS9 galactose-1-phosphate uridylyltransferase YP_130285.1 2396815 R 298386 CDS YP_130286.1 54309266 3123823 complement(2398050..2399060) 1 NC_006370.1 UDP-glucose 4-epimerase 2399060 3123823 PBPRA2082 Photobacterium profundum SS9 UDP-glucose 4-epimerase YP_130286.1 2398050 R 298386 CDS YP_130287.1 54309267 3122974 2399564..2400541 1 NC_006370.1 DNA-binding transcriptional repressor EbgR 2400541 3122974 PBPRA2083 Photobacterium profundum SS9 DNA-binding transcriptional repressor EbgR YP_130287.1 2399564 D 298386 CDS YP_130288.2 161936306 3122860 2401002..2404118 1 NC_006370.1 in Escherichia coli this is the second beta-galactosidase system; cryptic beta-D-galactosidase subunit alpha 2404118 ebgA 3122860 ebgA Photobacterium profundum SS9 cryptic beta-D-galactosidase subunit alpha YP_130288.2 2401002 D 298386 CDS YP_130289.1 54309269 3123499 2404119..2404571 1 NC_006370.1 in Escherichia coli this is the second beta-galactosidase system; cryptic beta-D-galactosidase subunit beta 2404571 ebgC 3123499 ebgC Photobacterium profundum SS9 cryptic beta-D-galactosidase subunit beta YP_130289.1 2404119 D 298386 CDS YP_130290.1 54309270 3122687 2404719..2406143 1 NC_006370.1 oxidoreductase 2406143 3122687 PBPRA2086 Photobacterium profundum SS9 oxidoreductase YP_130290.1 2404719 D 298386 CDS YP_130291.1 54309271 3123460 2406411..2409572 1 NC_006370.1 hypothetical protein 2409572 3123460 PBPRA2087 Photobacterium profundum SS9 hypothetical protein YP_130291.1 2406411 D 298386 CDS YP_130292.1 54309272 3122080 2409690..2410040 1 NC_006370.1 hypothetical protein 2410040 3122080 PBPRA2088 Photobacterium profundum SS9 hypothetical protein YP_130292.1 2409690 D 298386 CDS YP_130293.1 54309273 3123195 2410795..2412018 1 NC_006370.1 sodium/glutamate symporter 2412018 3123195 PBPRA2089 Photobacterium profundum SS9 sodium/glutamate symporter YP_130293.1 2410795 D 298386 CDS YP_130294.1 54309274 3124574 2412301..2412573 1 NC_006370.1 hypothetical protein 2412573 3124574 PBPRA2090 Photobacterium profundum SS9 hypothetical protein YP_130294.1 2412301 D 298386 CDS YP_130295.1 54309275 3124178 2412794..2413591 1 NC_006370.1 ParA family protein 2413591 3124178 PBPRA2091 Photobacterium profundum SS9 ParA family protein YP_130295.1 2412794 D 298386 CDS YP_130296.1 54309276 3124344 2415062..2415595 1 NC_006370.1 transposase 2415595 3124344 PBPRA2096 Photobacterium profundum SS9 transposase YP_130296.1 2415062 D 298386 CDS YP_130297.1 54309277 3122824 2415617..2416138 1 NC_006370.1 transposase 2416138 3122824 PBPRA2097 Photobacterium profundum SS9 transposase YP_130297.1 2415617 D 298386 CDS YP_130298.1 54309278 3122946 2416171..2417190 1 NC_006370.1 transposase 2417190 3122946 PBPRA2098 Photobacterium profundum SS9 transposase YP_130298.1 2416171 D 298386 CDS YP_130299.1 54309279 3124742 2417217..2417462 1 NC_006370.1 hypothetical protein 2417462 3124742 PBPRA2099 Photobacterium profundum SS9 hypothetical protein YP_130299.1 2417217 D 298386 CDS YP_130300.1 54309280 3124036 complement(2417997..2418554) 1 NC_006370.1 HugZ protein 2418554 3124036 PBPRA2100 Photobacterium profundum SS9 HugZ protein YP_130300.1 2417997 R 298386 CDS YP_130301.1 54309281 3123623 complement(2418674..2419192) 1 NC_006370.1 heme iron utilization protein 2419192 3123623 PBPRA2101 Photobacterium profundum SS9 heme iron utilization protein YP_130301.1 2418674 R 298386 CDS YP_130302.1 54309282 3124551 complement(2419264..2420715) 1 NC_006370.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 2420715 3124551 PBPRA2102 Photobacterium profundum SS9 coproporphyrinogen III oxidase YP_130302.1 2419264 R 298386 CDS YP_130303.1 54309283 3123131 2421178..2421957 1 NC_006370.1 TonB protein 2421957 3123131 PBPRA2103 Photobacterium profundum SS9 TonB protein YP_130303.1 2421178 D 298386 CDS YP_130304.1 54309284 3122341 2421961..2422626 1 NC_006370.1 ExbB-like protein 2422626 3122341 PBPRA2104 Photobacterium profundum SS9 ExbB-like protein YP_130304.1 2421961 D 298386 CDS YP_130305.1 54309285 3122013 2422719..2423042 1 NC_006370.1 ExbD, biopolymer transport protein ExbD/TolR 2423042 3122013 PBPRA2105 Photobacterium profundum SS9 ExbD, biopolymer transport protein ExbD/TolR YP_130305.1 2422719 D 298386 CDS YP_130306.1 54309286 3124731 2423054..2423911 1 NC_006370.1 hemin ABC transporter periplasmichemin-binding protein HutB 2423911 3124731 PBPRA2106 Photobacterium profundum SS9 hemin ABC transporter periplasmichemin-binding protein HutB YP_130306.1 2423054 D 298386 CDS YP_130307.1 54309287 3125124 2423930..2424982 1 NC_006370.1 hemin ABC transporter, permease protein 2424982 3125124 PBPRA2107 Photobacterium profundum SS9 hemin ABC transporter, permease protein YP_130307.1 2423930 D 298386 CDS YP_130308.1 54309288 3125078 2424979..2425812 1 NC_006370.1 with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit 2425812 hmuV 3125078 hmuV Photobacterium profundum SS9 hemin importer ATP-binding subunit YP_130308.1 2424979 D 298386 CDS YP_130309.1 54309289 3123518 2426254..2427330 1 NC_006370.1 LacI family transcriptional regulator 2427330 3123518 PBPRA2109 Photobacterium profundum SS9 LacI family transcriptional regulator YP_130309.1 2426254 D 298386 CDS YP_130310.1 54309290 3123677 2427798..2428388 1 NC_006370.1 hypothetical protein 2428388 3123677 PBPRA2110 Photobacterium profundum SS9 hypothetical protein YP_130310.1 2427798 D 298386 CDS YP_130311.1 54309291 3123413 2428841..2429194 1 NC_006370.1 hypothetical protein 2429194 3123413 PBPRA2111 Photobacterium profundum SS9 hypothetical protein YP_130311.1 2428841 D 298386 CDS YP_130312.1 54309292 3123503 2429305..2429904 1 NC_006370.1 hypothetical protein 2429904 3123503 PBPRA2112 Photobacterium profundum SS9 hypothetical protein YP_130312.1 2429305 D 298386 CDS YP_130313.1 54309293 3123081 2429913..2432132 1 NC_006370.1 hypothetical protein 2432132 3123081 PBPRA2113 Photobacterium profundum SS9 hypothetical protein YP_130313.1 2429913 D 298386 CDS YP_130314.1 54309294 3123682 2432155..2433363 1 NC_006370.1 ABC transporter solute-binding protein 2433363 3123682 PBPRA2114 Photobacterium profundum SS9 ABC transporter solute-binding protein YP_130314.1 2432155 D 298386 CDS YP_130315.1 54309295 3122018 2433489..2435246 1 NC_006370.1 hypohetical ABC transporter, permeaseprotein 2435246 3122018 PBPRA2115 Photobacterium profundum SS9 hypohetical ABC transporter, permeaseprotein YP_130315.1 2433489 D 298386 CDS YP_130316.1 54309296 3125387 2435212..2435871 1 NC_006370.1 ABC-type uncharacterized transport system ATPase component 2435871 3125387 PBPRA2116 Photobacterium profundum SS9 ABC-type uncharacterized transport system ATPase component YP_130316.1 2435212 D 298386 CDS YP_130317.1 54309297 3124849 2435864..2436493 1 NC_006370.1 phosphatidylglycerophosphate synthase 2436493 3124849 PBPRA2117 Photobacterium profundum SS9 phosphatidylglycerophosphate synthase YP_130317.1 2435864 D 298386 CDS YP_130318.1 54309298 3123468 complement(2436639..2437706) 1 NC_006370.1 alcohol dehydrogenase, zinc-containing 2437706 3123468 PBPRA2118 Photobacterium profundum SS9 alcohol dehydrogenase, zinc-containing YP_130318.1 2436639 R 298386 CDS YP_130319.1 54309299 3122996 2437895..2438836 1 NC_006370.1 LysR family transcriptional regulator 2438836 3122996 PBPRA2119 Photobacterium profundum SS9 LysR family transcriptional regulator YP_130319.1 2437895 D 298386 CDS YP_130320.1 54309300 3122175 complement(2438883..2439785) 1 NC_006370.1 DNA-binding transcriptional regulator 2439785 3122175 PBPRA2120 Photobacterium profundum SS9 DNA-binding transcriptional regulator YP_130320.1 2438883 R 298386 CDS YP_130321.1 54309301 3123130 2439892..2441100 1 NC_006370.1 uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC 2441100 3123130 PBPRA2121 Photobacterium profundum SS9 inner membrane transport protein YdhC YP_130321.1 2439892 D 298386 CDS YP_130322.1 54309302 3123790 complement(2441287..2442057) 1 NC_006370.1 cyclohexadienyl dehydratase precursor signal peptide protein 2442057 3123790 PBPRA2122 Photobacterium profundum SS9 cyclohexadienyl dehydratase precursor signal peptide protein YP_130322.1 2441287 R 298386 CDS YP_130323.1 54309303 3121997 complement(2442473..2442871) 1 NC_006370.1 outer membrane lipoprotein 2442871 3121997 PBPRA2123 Photobacterium profundum SS9 outer membrane lipoprotein YP_130323.1 2442473 R 298386 CDS YP_130324.1 54309304 3122307 2443002..2444282 1 NC_006370.1 hypothetical protein 2444282 3122307 PBPRA2124 Photobacterium profundum SS9 hypothetical protein YP_130324.1 2443002 D 298386 CDS YP_130325.1 54309305 3122795 complement(2444565..2445086) 1 NC_006370.1 TetR family transcriptional regulator 2445086 3122795 PBPRA2125 Photobacterium profundum SS9 TetR family transcriptional regulator YP_130325.1 2444565 R 298386 CDS YP_130326.1 54309306 3124642 2445375..2446616 1 NC_006370.1 hypothetical protein 2446616 3124642 PBPRA2126 Photobacterium profundum SS9 hypothetical protein YP_130326.1 2445375 D 298386 CDS YP_130327.1 54309307 3124882 2446619..2446861 1 NC_006370.1 hypothetical protein 2446861 3124882 PBPRA2127 Photobacterium profundum SS9 hypothetical protein YP_130327.1 2446619 D 298386 CDS YP_130328.1 54309308 3123745 complement(2446916..2447350) 1 NC_006370.1 transposase 2447350 3123745 PBPRA2128 Photobacterium profundum SS9 transposase YP_130328.1 2446916 R 298386 CDS YP_130329.1 54309309 3122889 2447503..2450301 1 NC_006370.1 AcrB/AcrD/AcrF family protein 2450301 3122889 PBPRA2129 Photobacterium profundum SS9 AcrB/AcrD/AcrF family protein YP_130329.1 2447503 D 298386 CDS YP_130330.1 54309310 3122645 complement(2450399..2451541) 1 NC_006370.1 hypothetical protein 2451541 3122645 PBPRA2130 Photobacterium profundum SS9 hypothetical protein YP_130330.1 2450399 R 298386 CDS YP_130331.1 54309311 3124808 complement(2451983..2452684) 1 NC_006370.1 transcriptional regulator 2452684 3124808 PBPRA2131 Photobacterium profundum SS9 transcriptional regulator YP_130331.1 2451983 R 298386 CDS YP_130332.1 54309312 3124890 2453694..2455085 1 NC_006370.1 sodium/alanine symporter 2455085 3124890 PBPRA2132 Photobacterium profundum SS9 sodium/alanine symporter YP_130332.1 2453694 D 298386 CDS YP_130333.1 54309313 3122511 complement(2455184..2455531) 1 NC_006370.1 hypothetical protein 2455531 3122511 PBPRA2133 Photobacterium profundum SS9 hypothetical protein YP_130333.1 2455184 R 298386 CDS YP_130334.1 54309314 3122977 2455559..2455837 1 NC_006370.1 hypothetical protein 2455837 3122977 PBPRA2134 Photobacterium profundum SS9 hypothetical protein YP_130334.1 2455559 D 298386 CDS YP_130335.1 54309315 3121971 complement(2455907..2456560) 1 NC_006370.1 hypothetical protein 2456560 3121971 PBPRA2135 Photobacterium profundum SS9 hypothetical protein YP_130335.1 2455907 R 298386 CDS YP_130336.1 54309316 3125382 2456940..2457248 1 NC_006370.1 hypothetical protein 2457248 3125382 PBPRA2136 Photobacterium profundum SS9 hypothetical protein YP_130336.1 2456940 D 298386 CDS YP_130337.1 54309317 3124525 complement(2457326..2458678) 1 NC_006370.1 chaperone 2458678 3124525 PBPRA2137 Photobacterium profundum SS9 chaperone YP_130337.1 2457326 R 298386 CDS YP_130338.1 54309318 3124809 2458744..2459478 1 NC_006370.1 disulfide oxidoreductase 2459478 3124809 PBPRA2138 Photobacterium profundum SS9 disulfide oxidoreductase YP_130338.1 2458744 D 298386 CDS YP_130339.1 54309319 3123449 2459994..2461076 1 NC_006370.1 hypothetical protein 2461076 3123449 PBPRA2139 Photobacterium profundum SS9 hypothetical protein YP_130339.1 2459994 D 298386 CDS YP_130340.1 54309320 3125250 2461365..2462369 1 NC_006370.1 major outer membrane protein OmpU 2462369 3125250 PBPRA2140 Photobacterium profundum SS9 major outer membrane protein OmpU YP_130340.1 2461365 D 298386 CDS YP_130341.1 54309321 3125385 2462406..2462720 1 NC_006370.1 hypothetical protein 2462720 3125385 PBPRA2141 Photobacterium profundum SS9 hypothetical protein YP_130341.1 2462406 D 298386 CDS YP_130342.1 54309322 3123348 2462770..2464920 1 NC_006370.1 hypothetical protein 2464920 3123348 PBPRA2142 Photobacterium profundum SS9 hypothetical protein YP_130342.1 2462770 D 298386 CDS YP_130343.1 54309323 3124983 2464941..2465648 1 NC_006370.1 hypothetical protein 2465648 3124983 PBPRA2143 Photobacterium profundum SS9 hypothetical protein YP_130343.1 2464941 D 298386 CDS YP_130344.1 54309324 3123836 2466073..2467731 1 NC_006370.1 hypothetical protein 2467731 3123836 PBPRA2144 Photobacterium profundum SS9 hypothetical protein YP_130344.1 2466073 D 298386 CDS YP_130345.1 54309325 3122568 2468130..2469815 1 NC_006370.1 methyl-accepting chemotaxis protein 2469815 3122568 PBPRA2145 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_130345.1 2468130 D 298386 CDS YP_130346.1 54309326 3124975 2470000..2471007 1 NC_006370.1 transcriptional regulator 2471007 3124975 PBPRA2146 Photobacterium profundum SS9 transcriptional regulator YP_130346.1 2470000 D 298386 CDS YP_130347.1 54309327 3122115 2471170..2472633 1 NC_006370.1 Na+/H+ antiporter 2472633 3122115 PBPRA2147 Photobacterium profundum SS9 Na+/H+ antiporter YP_130347.1 2471170 D 298386 CDS YP_130348.1 54309328 3123021 2472661..2473830 1 NC_006370.1 PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities 2473830 3123021 PBPRA2148 Photobacterium profundum SS9 PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities YP_130348.1 2472661 D 298386 CDS YP_130349.1 54309329 3123420 complement(2474046..2474789) 1 NC_006370.1 hypothetical protein 2474789 3123420 PBPRA2149 Photobacterium profundum SS9 hypothetical protein YP_130349.1 2474046 R 298386 CDS YP_130350.1 54309330 3123162 complement(2474920..2475333) 1 NC_006370.1 hypothetical protein 2475333 3123162 PBPRA2150 Photobacterium profundum SS9 hypothetical protein YP_130350.1 2474920 R 298386 CDS YP_130351.1 54309331 3124070 complement(2475499..2476260) 1 NC_006370.1 ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell; vitamin B12-transporter ATPase 2476260 3124070 PBPRA2151 Photobacterium profundum SS9 vitamin B12-transporter ATPase YP_130351.1 2475499 R 298386 CDS YP_130352.1 54309332 3122853 complement(2476287..2477312) 1 NC_006370.1 with BtuD and BtuF transports vitamin B12 into the cell; vtamin B12-transporter permease 2477312 3122853 PBPRA2152 Photobacterium profundum SS9 vtamin B12-transporter permease YP_130352.1 2476287 R 298386 CDS YP_130353.1 54309333 3124758 complement(2477436..2478503) 1 NC_006370.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 2478503 3124758 PBPRA2153 Photobacterium profundum SS9 succinylglutamate desuccinylase YP_130353.1 2477436 R 298386 CDS YP_130354.1 54309334 3122272 complement(2478793..2479104) 1 NC_006370.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 2479104 ihfA 3122272 ihfA Photobacterium profundum SS9 integration host factor subunit alpha YP_130354.1 2478793 R 298386 CDS YP_130355.1 54309335 3123540 complement(2479608..2482046) 1 NC_006370.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2482046 pheT 3123540 pheT Photobacterium profundum SS9 phenylalanyl-tRNA synthetase subunit beta YP_130355.1 2479608 R 298386 CDS YP_130356.2 161936305 3123047 complement(2482064..2483047) 1 NC_006370.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2483047 pheS 3123047 pheS Photobacterium profundum SS9 phenylalanyl-tRNA synthetase subunit alpha YP_130356.2 2482064 R 298386 CDS YP_130357.1 54309337 3123541 complement(2483502..2483855) 1 NC_006370.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2483855 rplT 3123541 rplT Photobacterium profundum SS9 50S ribosomal protein L20 YP_130357.1 2483502 R 298386 CDS YP_130358.1 54309338 3123490 complement(2484189..2484578) 1 NC_006370.1 initiation factor IF3 2484578 3123490 PBPRA2158 Photobacterium profundum SS9 initiation factor IF3 YP_130358.1 2484189 R 298386 CDS YP_130359.1 54309339 3123894 complement(2484744..2485181) 1 NC_006370.1 tRNA synthetase 2485181 3123894 PBPRA2159 Photobacterium profundum SS9 tRNA synthetase YP_130359.1 2484744 R 298386 CDS YP_130360.1 54309340 3125262 complement(2485389..2485628) 1 NC_006370.1 hypothetical protein 2485628 3125262 PBPRA2160 Photobacterium profundum SS9 hypothetical protein YP_130360.1 2485389 R 298386 CDS YP_130361.1 54309341 3124673 complement(2485697..2486674) 1 NC_006370.1 threonyl-tRNA synthetase 2486674 3124673 PBPRA2161 Photobacterium profundum SS9 threonyl-tRNA synthetase YP_130361.1 2485697 R 298386 CDS YP_130362.1 54309342 3122783 complement(2487370..2487849) 1 NC_006370.1 hypothetical protein 2487849 3122783 PBPRA2162 Photobacterium profundum SS9 hypothetical protein YP_130362.1 2487370 R 298386 CDS YP_130363.1 54309343 3123728 complement(2487858..2488100) 1 NC_006370.1 hypothetical protein 2488100 3123728 PBPRA2163 Photobacterium profundum SS9 hypothetical protein YP_130363.1 2487858 R 298386 CDS YP_130364.1 54309344 3124043 2488133..2488399 1 NC_006370.1 hypothetical protein 2488399 3124043 PBPRA2164 Photobacterium profundum SS9 hypothetical protein YP_130364.1 2488133 D 298386 CDS YP_130365.1 54309345 3124174 complement(2489605..2489874) 1 NC_006370.1 hypothetical protein 2489874 3124174 PBPRA2166 Photobacterium profundum SS9 hypothetical protein YP_130365.1 2489605 R 298386 CDS YP_130366.1 54309346 3122119 2490163..2491620 1 NC_006370.1 hypothetical protein 2491620 3122119 PBPRA2167 Photobacterium profundum SS9 hypothetical protein YP_130366.1 2490163 D 298386 CDS YP_130367.1 54309347 3121966 complement(2491692..2492027) 1 NC_006370.1 hypothetical protein 2492027 3121966 PBPRA2168 Photobacterium profundum SS9 hypothetical protein YP_130367.1 2491692 R 298386 CDS YP_130368.1 54309348 3123314 2492474..2493178 1 NC_006370.1 histidine utilization repressor 2493178 3123314 PBPRA2169 Photobacterium profundum SS9 histidine utilization repressor YP_130368.1 2492474 D 298386 CDS YP_130369.1 54309349 3123031 2493429..2494664 1 NC_006370.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 2494664 3123031 PBPRA2170 Photobacterium profundum SS9 imidazolonepropionase YP_130369.1 2493429 D 298386 CDS YP_130370.1 54309350 3125068 2494654..2495748 1 NC_006370.1 catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase 2495748 3125068 PBPRA2171 Photobacterium profundum SS9 formimidoylglutamase YP_130370.1 2494654 D 298386 CDS YP_130371.1 54309351 3123994 2495827..2497533 1 NC_006370.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 2497533 3123994 PBPRA2172 Photobacterium profundum SS9 urocanate hydratase YP_130371.1 2495827 D 298386 CDS YP_130372.1 54309352 3125410 2497557..2499089 1 NC_006370.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 2499089 hutH 3125410 hutH Photobacterium profundum SS9 histidine ammonia-lyase YP_130372.1 2497557 D 298386 CDS YP_130373.1 54309353 3124845 2499372..2500262 1 NC_006370.1 hypothetical protein 2500262 3124845 PBPRA2174 Photobacterium profundum SS9 hypothetical protein YP_130373.1 2499372 D 298386 CDS YP_130374.1 54309354 3123368 2500597..2501130 1 NC_006370.1 phosphatase 2501130 3123368 PBPRA2175 Photobacterium profundum SS9 phosphatase YP_130374.1 2500597 D 298386 CDS YP_130375.1 54309355 3123843 complement(2502044..2502664) 1 NC_006370.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2502664 3123843 PBPRA2176 Photobacterium profundum SS9 riboflavin synthase subunit alpha YP_130375.1 2502044 R 298386 CDS YP_130376.1 54309356 3122302 complement(2502823..2504268) 1 NC_006370.1 hypothetical protein 2504268 3122302 PBPRA2177 Photobacterium profundum SS9 hypothetical protein YP_130376.1 2502823 R 298386 CDS YP_130377.1 54309357 3124826 complement(2504261..2505046) 1 NC_006370.1 DNA-binding response regulator OmpR 2505046 3124826 PBPRA2178 Photobacterium profundum SS9 DNA-binding response regulator OmpR YP_130377.1 2504261 R 298386 CDS YP_130378.1 54309358 3123044 complement(2505262..2505534) 1 NC_006370.1 hypothetical protein 2505534 3123044 PBPRA2179 Photobacterium profundum SS9 hypothetical protein YP_130378.1 2505262 R 298386 CDS YP_130379.1 54309359 3123933 2506047..2507417 1 NC_006370.1 NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein 2507417 3123933 PBPRA2180 Photobacterium profundum SS9 multidrug efflux protein YP_130379.1 2506047 D 298386 CDS YP_130380.1 54309360 3121940 2508155..2509837 1 NC_006370.1 chitinase 2509837 3121940 PBPRA2181 Photobacterium profundum SS9 chitinase YP_130380.1 2508155 D 298386 CDS YP_130381.1 54309361 3122916 2510778..2513078 1 NC_006370.1 hypothetical protein 2513078 3122916 PBPRA2182 Photobacterium profundum SS9 hypothetical protein YP_130381.1 2510778 D 298386 CDS YP_130382.1 54309362 3123644 2513978..2514769 1 NC_006370.1 hypothetical protein 2514769 3123644 PBPRA2184 Photobacterium profundum SS9 hypothetical protein YP_130382.1 2513978 D 298386 CDS YP_130383.1 54309363 3123580 2515378..2516406 1 NC_006370.1 amino acid ABC transporter, periplasmic amino acid-binding protein 2516406 3123580 PBPRA2185 Photobacterium profundum SS9 amino acid ABC transporter, periplasmic amino acid-binding protein YP_130383.1 2515378 D 298386 CDS YP_130384.1 54309364 3122729 2516494..2517705 1 NC_006370.1 amino acid ABC transporter, permease protein 2517705 3122729 PBPRA2186 Photobacterium profundum SS9 amino acid ABC transporter, permease protein YP_130384.1 2516494 D 298386 CDS YP_130385.1 54309365 3122544 2517710..2518807 1 NC_006370.1 ABC-type amino acid transport system, permease component 2518807 3122544 PBPRA2187 Photobacterium profundum SS9 ABC-type amino acid transport system, permease component YP_130385.1 2517710 D 298386 CDS YP_130386.1 54309366 3124157 2518822..2519646 1 NC_006370.1 amino acid ABC transporter, ATP-binding protein 2519646 3124157 PBPRA2188 Photobacterium profundum SS9 amino acid ABC transporter, ATP-binding protein YP_130386.1 2518822 D 298386 CDS YP_130387.1 54309367 3122138 2519728..2519997 1 NC_006370.1 hypothetical protein 2519997 3122138 PBPRA2189 Photobacterium profundum SS9 hypothetical protein YP_130387.1 2519728 D 298386 CDS YP_130388.1 54309368 3123390 2520033..2520698 1 NC_006370.1 carrier/transport protein 2520698 3123390 PBPRA2190 Photobacterium profundum SS9 carrier/transport protein YP_130388.1 2520033 D 298386 CDS YP_130389.1 54309369 3122901 2520795..2521181 1 NC_006370.1 sulfite reductase 2521181 3122901 PBPRA2191 Photobacterium profundum SS9 sulfite reductase YP_130389.1 2520795 D 298386 CDS YP_130390.1 54309370 3123037 complement(2521310..2521582) 1 NC_006370.1 acylphosphatase 2521582 3123037 PBPRA2192 Photobacterium profundum SS9 acylphosphatase YP_130390.1 2521310 R 298386 CDS YP_130391.1 54309371 3124905 2521677..2523077 1 NC_006370.1 methyl-accepting chemotaxis protein 2523077 3124905 PBPRA2193 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_130391.1 2521677 D 298386 CDS YP_130392.1 54309372 3124748 2523127..2524383 1 NC_006370.1 SAM-dependent methyltransferase 2524383 3124748 PBPRA2194 Photobacterium profundum SS9 SAM-dependent methyltransferase YP_130392.1 2523127 D 298386 CDS YP_130393.1 54309373 3124793 complement(2524447..2525205) 1 NC_006370.1 hypothetical protein 2525205 3124793 PBPRA2195 Photobacterium profundum SS9 hypothetical protein YP_130393.1 2524447 R 298386 CDS YP_130394.1 54309374 3124996 2525494..2526138 1 NC_006370.1 hypothetical protein 2526138 3124996 PBPRA2196 Photobacterium profundum SS9 hypothetical protein YP_130394.1 2525494 D 298386 CDS YP_130395.1 54309375 3122848 complement(2526216..2527445) 1 NC_006370.1 hypothetical protein 2527445 3122848 PBPRA2197 Photobacterium profundum SS9 hypothetical protein YP_130395.1 2526216 R 298386 CDS YP_130396.1 54309376 3123040 2527805..2529625 1 NC_006370.1 chitinase 2529625 3123040 PBPRA2198 Photobacterium profundum SS9 chitinase YP_130396.1 2527805 D 298386 CDS YP_130397.1 54309377 3124126 2529673..2531052 1 NC_006370.1 hypothetical protein 2531052 3124126 PBPRA2199 Photobacterium profundum SS9 hypothetical protein YP_130397.1 2529673 D 298386 CDS YP_130398.1 54309378 3124427 2531538..2532155 1 NC_006370.1 hypothetical protein 2532155 3124427 PBPRA2200 Photobacterium profundum SS9 hypothetical protein YP_130398.1 2531538 D 298386 CDS YP_130399.1 54309379 3122323 complement(2532784..2533905) 1 NC_006370.1 alanine dehydrogenase 2533905 3122323 PBPRA2201 Photobacterium profundum SS9 alanine dehydrogenase YP_130399.1 2532784 R 298386 CDS YP_130400.1 54309380 3122443 complement(2534968..2535711) 1 NC_006370.1 hypothetical protein 2535711 3122443 PBPRA2202 Photobacterium profundum SS9 hypothetical protein YP_130400.1 2534968 R 298386 CDS YP_130401.1 54309381 3123559 complement(2535767..2536537) 1 NC_006370.1 hypothetical protein 2536537 3123559 PBPRA2203 Photobacterium profundum SS9 hypothetical protein YP_130401.1 2535767 R 298386 CDS YP_130402.1 54309382 3124430 complement(2536534..2537742) 1 NC_006370.1 hypothetical protein 2537742 3124430 PBPRA2204 Photobacterium profundum SS9 hypothetical protein YP_130402.1 2536534 R 298386 CDS YP_130403.1 54309383 3124914 2538453..2538704 1 NC_006370.1 hypothetical protein 2538704 3124914 PBPRA2205 Photobacterium profundum SS9 hypothetical protein YP_130403.1 2538453 D 298386 CDS YP_130404.1 54309384 3125290 complement(2538804..2539562) 1 NC_006370.1 phosphatase/phosphohexomutase 2539562 3125290 PBPRA2206 Photobacterium profundum SS9 phosphatase/phosphohexomutase YP_130404.1 2538804 R 298386 CDS YP_130405.1 54309385 3124912 complement(2539619..2540908) 1 NC_006370.1 transporter 2540908 3124912 PBPRA2207 Photobacterium profundum SS9 transporter YP_130405.1 2539619 R 298386 CDS YP_130406.1 54309386 3125117 complement(2540958..2541977) 1 NC_006370.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 2541977 3125117 PBPRA2208 Photobacterium profundum SS9 glyceraldehyde-3-phosphate dehydrogenase YP_130406.1 2540958 R 298386 CDS YP_130407.1 54309387 3122223 complement(2542170..2542682) 1 NC_006370.1 phosphatase 2542682 3122223 PBPRA2209 Photobacterium profundum SS9 phosphatase YP_130407.1 2542170 R 298386 CDS YP_130408.1 54309388 3122296 complement(2542749..2543447) 1 NC_006370.1 hypothetical protein 2543447 3122296 PBPRA2210 Photobacterium profundum SS9 hypothetical protein YP_130408.1 2542749 R 298386 CDS YP_130409.1 54309389 3123703 complement(2543670..2544827) 1 NC_006370.1 hypothetical protein 2544827 3123703 PBPRA2211 Photobacterium profundum SS9 hypothetical protein YP_130409.1 2543670 R 298386 CDS YP_130410.1 54309390 3124339 complement(2545114..2546751) 1 NC_006370.1 alcohol dehydrogenase 2546751 3124339 PBPRA2212 Photobacterium profundum SS9 alcohol dehydrogenase YP_130410.1 2545114 R 298386 CDS YP_130411.1 54309391 3123093 2547056..2549047 1 NC_006370.1 short chain dehydrogenase 2549047 3123093 PBPRA2213 Photobacterium profundum SS9 short chain dehydrogenase YP_130411.1 2547056 D 298386 CDS YP_130412.1 54309392 3122594 2549117..2549383 1 NC_006370.1 acyl-CoA-binding protein 2549383 3122594 PBPRA2214 Photobacterium profundum SS9 acyl-CoA-binding protein YP_130412.1 2549117 D 298386 CDS YP_130413.1 54309393 3122684 complement(2549506..2551185) 1 NC_006370.1 hypothetical protein 2551185 3122684 PBPRA2215 Photobacterium profundum SS9 hypothetical protein YP_130413.1 2549506 R 298386 CDS YP_130414.1 54309394 3124502 complement(2551197..2551553) 1 NC_006370.1 hypothetical protein 2551553 3124502 PBPRA2216 Photobacterium profundum SS9 hypothetical protein YP_130414.1 2551197 R 298386 CDS YP_130415.1 54309395 3122976 2551964..2554234 1 NC_006370.1 hypothetical protein 2554234 3122976 PBPRA2217 Photobacterium profundum SS9 hypothetical protein YP_130415.1 2551964 D 298386 CDS YP_130416.1 54309396 3123998 complement(2555696..2557342) 1 NC_006370.1 hypothetical protein 2557342 3123998 PBPRA2220 Photobacterium profundum SS9 hypothetical protein YP_130416.1 2555696 R 298386 CDS YP_130417.1 54309397 3124403 2557966..2558943 1 NC_006370.1 LysR family transcriptional regulator 2558943 3124403 PBPRA2222 Photobacterium profundum SS9 LysR family transcriptional regulator YP_130417.1 2557966 D 298386 CDS YP_130418.1 54309398 3124650 complement(2559015..2560706) 1 NC_006370.1 L-lactate permease 2560706 3124650 PBPRA2223 Photobacterium profundum SS9 L-lactate permease YP_130418.1 2559015 R 298386 CDS YP_130419.1 54309399 3123364 2561571..2563277 1 NC_006370.1 component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; D-lactate dehydrogenase 2563277 3123364 PBPRA2224 Photobacterium profundum SS9 D-lactate dehydrogenase YP_130419.1 2561571 D 298386 CDS YP_130420.1 54309400 3125069 complement(2564783..2565916) 1 NC_006370.1 carboxynorspermidine decarboxylase 2565916 3125069 PBPRA2228 Photobacterium profundum SS9 carboxynorspermidine decarboxylase YP_130420.1 2564783 R 298386 CDS YP_130421.1 54309401 3124938 complement(2565998..2567242) 1 NC_006370.1 saccharopine dehydrogenase 2567242 3124938 PBPRA2229 Photobacterium profundum SS9 saccharopine dehydrogenase YP_130421.1 2565998 R 298386 CDS YP_130422.1 54309402 3125126 complement(2567391..2570276) 1 NC_006370.1 diaminobutyrate-pyruvate transaminase & L-2,4-diaminobutyrate decarboxylase 2570276 3125126 PBPRA2230 Photobacterium profundum SS9 diaminobutyrate-pyruvate transaminase & L-2,4-diaminobutyrate decarboxylase YP_130422.1 2567391 R 298386 CDS YP_130423.1 54309403 3125201 2571438..2572460 1 NC_006370.1 regulatory protein PfoR 2572460 3125201 PBPRA2231 Photobacterium profundum SS9 regulatory protein PfoR YP_130423.1 2571438 D 298386 CDS YP_130424.1 54309404 3125180 complement(2573340..2573897) 1 NC_006370.1 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase 2573897 3125180 PBPRA2236 Photobacterium profundum SS9 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase YP_130424.1 2573340 R 298386 CDS YP_130425.1 54309405 3125500 complement(2573956..2575806) 1 NC_006370.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 2575806 uvrC 3125500 uvrC Photobacterium profundum SS9 excinuclease ABC subunit C YP_130425.1 2573956 R 298386 CDS YP_130426.1 54309406 3125396 complement(2575806..2576450) 1 NC_006370.1 in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator 2576450 3125396 PBPRA2238 Photobacterium profundum SS9 response regulator YP_130426.1 2575806 R 298386 CDS YP_130427.1 54309407 3125533 2577347..2577949 1 NC_006370.1 hypothetical protein 2577949 3125533 PBPRA2239 Photobacterium profundum SS9 hypothetical protein YP_130427.1 2577347 D 298386 CDS YP_130428.1 54309408 3125316 2577953..2579647 1 NC_006370.1 ABC transporter, ATP-binding protein 2579647 3125316 PBPRA2240 Photobacterium profundum SS9 ABC transporter, ATP-binding protein YP_130428.1 2577953 D 298386 CDS YP_130429.1 54309409 3124955 2579647..2580486 1 NC_006370.1 ABC transporter, membrane-spanning permease 2580486 3124955 PBPRA2241 Photobacterium profundum SS9 ABC transporter, membrane-spanning permease YP_130429.1 2579647 D 298386 CDS YP_130430.1 54309410 3122046 2580818..2581564 1 NC_006370.1 GntR family transcriptional regulator 2581564 3122046 PBPRA2242 Photobacterium profundum SS9 GntR family transcriptional regulator YP_130430.1 2580818 D 298386 CDS YP_130431.1 54309411 3125132 2582332..2583780 1 NC_006370.1 xanthine dehydrogenase, XdhA subunit 2583780 3125132 PBPRA2243 Photobacterium profundum SS9 xanthine dehydrogenase, XdhA subunit YP_130431.1 2582332 D 298386 CDS YP_130432.1 54309412 3124637 2583773..2586175 1 NC_006370.1 xanthine dehydrogenase, XdhB subunit 2586175 3124637 PBPRA2244 Photobacterium profundum SS9 xanthine dehydrogenase, XdhB subunit YP_130432.1 2583773 D 298386 CDS YP_130433.1 54309413 3125053 2586199..2587032 1 NC_006370.1 xanthine dehydrogenase accessory factor XdhC 2587032 3125053 PBPRA2245 Photobacterium profundum SS9 xanthine dehydrogenase accessory factor XdhC YP_130433.1 2586199 D 298386 CDS YP_130434.1 54309414 3125447 2587059..2588396 1 NC_006370.1 Catalyzes the deamination of guanine; guanine deaminase 2588396 3125447 PBPRA2246 Photobacterium profundum SS9 guanine deaminase YP_130434.1 2587059 D 298386 CDS YP_130435.1 54309415 3124580 2588482..2588808 1 NC_006370.1 hypothetical protein 2588808 3124580 PBPRA2247 Photobacterium profundum SS9 hypothetical protein YP_130435.1 2588482 D 298386 CDS YP_130436.1 54309416 3124715 complement(2589006..2589272) 1 NC_006370.1 hypothetical protein 2589272 3124715 PBPRA2248 Photobacterium profundum SS9 hypothetical protein YP_130436.1 2589006 R 298386 CDS YP_130437.1 54309417 3121946 2589659..2589964 1 NC_006370.1 merR protein 2589964 3121946 PBPRA2249 Photobacterium profundum SS9 merR protein YP_130437.1 2589659 D 298386 CDS YP_130438.1 54309418 3124698 2591375..2592115 1 NC_006370.1 RepE; RepFIB; replication protein 2592115 3124698 PBPRA2250 Photobacterium profundum SS9 replication protein YP_130438.1 2591375 D 298386 CDS YP_130439.1 54309419 3124588 2592300..2593784 1 NC_006370.1 ABC transporter periplasmic solute-binding protein 2593784 3124588 PBPRA2251 Photobacterium profundum SS9 ABC transporter periplasmic solute-binding protein YP_130439.1 2592300 D 298386 CDS YP_130440.1 54309420 3122037 2593888..2594853 1 NC_006370.1 ABC transporter permease 2594853 3122037 PBPRA2252 Photobacterium profundum SS9 ABC transporter permease YP_130440.1 2593888 D 298386 CDS YP_130441.1 54309421 3122284 2594855..2595715 1 NC_006370.1 ABC transporter permease 2595715 3122284 PBPRA2253 Photobacterium profundum SS9 ABC transporter permease YP_130441.1 2594855 D 298386 CDS YP_130442.1 54309422 3122055 2595726..2597384 1 NC_006370.1 oligopeptide transport ATP-binding protein 2597384 3122055 PBPRA2254 Photobacterium profundum SS9 oligopeptide transport ATP-binding protein YP_130442.1 2595726 D 298386 CDS YP_130443.1 54309423 3122555 2598612..2599877 1 NC_006370.1 porin involved in the transport of maltose and maltodextrins; maltoporin 2599877 lamB 3122555 lamB Photobacterium profundum SS9 maltoporin YP_130443.1 2598612 D 298386 CDS YP_130444.1 54309424 3122398 2599898..2600731 1 NC_006370.1 maltose operon periplasmic protein 2600731 3122398 PBPRA2256 Photobacterium profundum SS9 maltose operon periplasmic protein YP_130444.1 2599898 D 298386 CDS YP_130445.1 54309425 3121979 2600886..2601248 1 NC_006370.1 hypothetical protein 2601248 3121979 PBPRA2257 Photobacterium profundum SS9 hypothetical protein YP_130445.1 2600886 D 298386 CDS YP_130446.1 54309426 3122149 complement(2601378..2601944) 1 NC_006370.1 hypothetical protein 2601944 3122149 PBPRA2258 Photobacterium profundum SS9 hypothetical protein YP_130446.1 2601378 R 298386 CDS YP_130447.1 54309427 3122497 complement(2602174..2603400) 1 NC_006370.1 hypothetical protein 2603400 3122497 PBPRA2259 Photobacterium profundum SS9 hypothetical protein YP_130447.1 2602174 R 298386 CDS YP_130448.1 54309428 3122611 complement(2603555..2604154) 1 NC_006370.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase 2604154 3122611 PBPRA2260 Photobacterium profundum SS9 ureidoglycolate hydrolase YP_130448.1 2603555 R 298386 CDS YP_130449.1 54309429 3125523 complement(2604349..2605341) 1 NC_006370.1 catalyzes the formation of S-ureidoglycolate and urea from allantoate; allantoicase 2605341 3125523 PBPRA2261 Photobacterium profundum SS9 allantoicase YP_130449.1 2604349 R 298386 CDS YP_130450.1 54309430 3122316 complement(2605439..2605954) 1 NC_006370.1 hypothetical protein 2605954 3122316 PBPRA2262 Photobacterium profundum SS9 hypothetical protein YP_130450.1 2605439 R 298386 CDS YP_130451.1 54309431 3122757 complement(2605957..2606880) 1 NC_006370.1 polysaccharide deacetylase family protein 2606880 3122757 PBPRA2263 Photobacterium profundum SS9 polysaccharide deacetylase family protein YP_130451.1 2605957 R 298386 CDS YP_130452.1 54309432 3122415 2607259..2607612 1 NC_006370.1 transthyretin family protein 2607612 3122415 PBPRA2264 Photobacterium profundum SS9 transthyretin family protein YP_130452.1 2607259 D 298386 CDS YP_130453.1 54309433 3122508 2607860..2609209 1 NC_006370.1 transporter 2609209 3122508 PBPRA2265 Photobacterium profundum SS9 transporter YP_130453.1 2607860 D 298386 CDS YP_130454.1 54309434 3122655 2609434..2610840 1 NC_006370.1 xanthine/uracil permease 2610840 3122655 PBPRA2266 Photobacterium profundum SS9 xanthine/uracil permease YP_130454.1 2609434 D 298386 CDS YP_130455.1 54309435 3122820 2611028..2612392 1 NC_006370.1 catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway.; hydroxydechloroatrazine ethylaminohydrolase 2612392 3122820 PBPRA2267 Photobacterium profundum SS9 hydroxydechloroatrazine ethylaminohydrolase YP_130455.1 2611028 D 298386 CDS YP_130456.1 54309436 3122720 complement(2612565..2613173) 1 NC_006370.1 transcriptional regulator 2613173 3122720 PBPRA2268 Photobacterium profundum SS9 transcriptional regulator YP_130456.1 2612565 R 298386 CDS YP_130457.1 54309437 3122448 2613710..2614816 1 NC_006370.1 alpha/beta hydrolase 2614816 3122448 PBPRA2269 Photobacterium profundum SS9 alpha/beta hydrolase YP_130457.1 2613710 D 298386 CDS YP_130458.1 54309438 3122440 complement(2614922..2615356) 1 NC_006370.1 transposase 2615356 3122440 PBPRA2270 Photobacterium profundum SS9 transposase YP_130458.1 2614922 R 298386 CDS YP_130459.1 54309439 3122700 complement(2615511..2615873) 1 NC_006370.1 hypothetical protein 2615873 3122700 PBPRA2271 Photobacterium profundum SS9 hypothetical protein YP_130459.1 2615511 R 298386 CDS YP_130460.1 54309440 3123113 complement(2615973..2617280) 1 NC_006370.1 hydroxypyruvate reductase 2617280 3123113 PBPRA2272 Photobacterium profundum SS9 hydroxypyruvate reductase YP_130460.1 2615973 R 298386 CDS YP_130461.1 54309441 3122823 complement(2617611..2618498) 1 NC_006370.1 oxidoreductase 2618498 3122823 PBPRA2273 Photobacterium profundum SS9 oxidoreductase YP_130461.1 2617611 R 298386 CDS YP_130462.1 54309442 3122900 complement(2618510..2619307) 1 NC_006370.1 hydroxypyruvate isomerase 2619307 3122900 PBPRA2274 Photobacterium profundum SS9 hydroxypyruvate isomerase YP_130462.1 2618510 R 298386 CDS YP_130463.2 161936304 3122472 complement(2619323..2621098) 1 NC_006370.1 catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 2621098 3122472 PBPRA2275 Photobacterium profundum SS9 glyoxylate carboligase YP_130463.2 2619323 R 298386 CDS YP_130464.1 54309444 3122788 2621419..2623065 1 NC_006370.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 2623065 3122788 PBPRA2276 Photobacterium profundum SS9 malate synthase YP_130464.1 2621419 D 298386 CDS YP_130465.1 54309445 3122965 2623109..2623531 1 NC_006370.1 hypothetical protein 2623531 3122965 PBPRA2277 Photobacterium profundum SS9 hypothetical protein YP_130465.1 2623109 D 298386 CDS YP_130466.1 54309446 3123082 2623808..2624098 1 NC_006370.1 hypothetical protein 2624098 3123082 PBPRA2278 Photobacterium profundum SS9 hypothetical protein YP_130466.1 2623808 D 298386 CDS YP_130467.1 54309447 3123274 complement(2624252..2625535) 1 NC_006370.1 TRAP-type C4-dicarboxylate transport system, large permease component 2625535 3123274 PBPRA2279 Photobacterium profundum SS9 TRAP-type C4-dicarboxylate transport system, large permease component YP_130467.1 2624252 R 298386 CDS YP_130468.1 54309448 3123432 complement(2625545..2626057) 1 NC_006370.1 TRAP-type C4-dicarboxylate transport system, small permease component 2626057 3123432 PBPRA2280 Photobacterium profundum SS9 TRAP-type C4-dicarboxylate transport system, small permease component YP_130468.1 2625545 R 298386 CDS YP_130469.1 54309449 3123117 complement(2626152..2627120) 1 NC_006370.1 TRAP-type C4-dicarboxylate transport system, periplasmic component 2627120 3123117 PBPRA2281 Photobacterium profundum SS9 TRAP-type C4-dicarboxylate transport system, periplasmic component YP_130469.1 2626152 R 298386 CDS YP_130470.1 54309450 3122980 complement(2627566..2628057) 1 NC_006370.1 hypothetical protein 2628057 3122980 PBPRA2282 Photobacterium profundum SS9 hypothetical protein YP_130470.1 2627566 R 298386 CDS YP_130471.1 54309451 3123440 complement(2628145..2629635) 1 NC_006370.1 sodium/glucose cotransporter 2629635 3123440 PBPRA2283 Photobacterium profundum SS9 sodium/glucose cotransporter YP_130471.1 2628145 R 298386 CDS YP_130472.1 54309452 3123290 complement(2629739..2630617) 1 NC_006370.1 catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein; N-acetylmannosamine kinase 2630617 3123290 PBPRA2284 Photobacterium profundum SS9 N-acetylmannosamine kinase YP_130472.1 2629739 R 298386 CDS YP_130473.1 54309453 3123421 complement(2630614..2631321) 1 NC_006370.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 2631321 3123421 PBPRA2285 Photobacterium profundum SS9 N-acetylmannosamine-6-phosphate 2-epimerase YP_130473.1 2630614 R 298386 CDS YP_130474.1 54309454 3123164 complement(2631912..2632784) 1 NC_006370.1 rpiR family transcriptional regulatory protein 2632784 3123164 PBPRA2286 Photobacterium profundum SS9 rpiR family transcriptional regulatory protein YP_130474.1 2631912 R 298386 CDS YP_130475.1 54309455 3125287 2633155..2634051 1 NC_006370.1 N-acetylneuraminate lyase 2634051 3125287 PBPRA2287 Photobacterium profundum SS9 N-acetylneuraminate lyase YP_130475.1 2633155 D 298386 CDS YP_130476.1 54309456 3123110 2634669..2637323 1 NC_006370.1 ToxR-regulated lipoprotein 2637323 3123110 PBPRA2288 Photobacterium profundum SS9 ToxR-regulated lipoprotein YP_130476.1 2634669 D 298386 CDS YP_130477.1 54309457 3123383 complement(2637837..2638661) 1 NC_006370.1 hypothetical protein 2638661 3123383 PBPRA2289 Photobacterium profundum SS9 hypothetical protein YP_130477.1 2637837 R 298386 CDS YP_130478.1 54309458 3123238 complement(2638738..2639682) 1 NC_006370.1 triphosphoribosyl-dephospho-CoA synthase 2639682 3123238 PBPRA2290 Photobacterium profundum SS9 triphosphoribosyl-dephospho-CoA synthase YP_130478.1 2638738 R 298386 CDS YP_130479.1 54309459 3123317 complement(2639675..2640202) 1 NC_006370.1 apo-citrate lyase phosphoribosyl-dephospho-CoA transferase 2640202 3123317 PBPRA2291 Photobacterium profundum SS9 apo-citrate lyase phosphoribosyl-dephospho-CoA transferase YP_130479.1 2639675 R 298386 CDS YP_130480.1 54309460 3123431 complement(2640199..2641725) 1 NC_006370.1 citrate lyase, alpha subunit 2641725 3123431 PBPRA2292 Photobacterium profundum SS9 citrate lyase, alpha subunit YP_130480.1 2640199 R 298386 CDS YP_130481.1 54309461 3123649 complement(2641735..2642625) 1 NC_006370.1 citrate lyase, beta subunit 2642625 3123649 PBPRA2293 Photobacterium profundum SS9 citrate lyase, beta subunit YP_130481.1 2641735 R 298386 CDS YP_130482.1 54309462 3125539 2642617..2642931 1 NC_006370.1 hypothetical protein 2642931 3125539 PBPRA2294 Photobacterium profundum SS9 hypothetical protein YP_130482.1 2642617 D 298386 CDS YP_130483.1 54309463 3125404 complement(2642978..2644096) 1 NC_006370.1 citrate (pro-3S)-lyase ligase 2644096 3125404 PBPRA2295 Photobacterium profundum SS9 citrate (pro-3S)-lyase ligase YP_130483.1 2642978 R 298386 CDS YP_130484.1 54309464 3123599 2644285..2645628 1 NC_006370.1 citrate-sodium symporter 2645628 3123599 PBPRA2296 Photobacterium profundum SS9 citrate-sodium symporter YP_130484.1 2644285 D 298386 CDS YP_130485.1 54309465 3123643 complement(2645629..2645895) 1 NC_006370.1 hypothetical protein 2645895 3123643 PBPRA2297 Photobacterium profundum SS9 hypothetical protein YP_130485.1 2645629 R 298386 CDS YP_130486.1 54309466 3123765 2645972..2647762 1 NC_006370.1 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 2647762 3123765 PBPRA2298 Photobacterium profundum SS9 oxaloacetate decarboxylase YP_130486.1 2645972 D 298386 CDS YP_130487.1 54309467 3123967 2647780..2649081 1 NC_006370.1 oxaloacetate decarboxylase, beta subunit 2649081 3123967 PBPRA2299 Photobacterium profundum SS9 oxaloacetate decarboxylase, beta subunit YP_130487.1 2647780 D 298386 CDS YP_130488.1 54309468 3124966 2649193..2650845 1 NC_006370.1 sensor kinase citA 2650845 3124966 PBPRA2300 Photobacterium profundum SS9 sensor kinase citA YP_130488.1 2649193 D 298386 CDS YP_130489.1 54309469 3123534 2650847..2651509 1 NC_006370.1 transcriptional regulator CitB 2651509 3123534 PBPRA2301 Photobacterium profundum SS9 transcriptional regulator CitB YP_130489.1 2650847 D 298386 CDS YP_130490.1 54309470 3123685 2651521..2651907 1 NC_006370.1 hypothetical protein 2651907 3123685 PBPRA2302 Photobacterium profundum SS9 hypothetical protein YP_130490.1 2651521 D 298386 CDS YP_130491.1 54309471 3125323 complement(2651947..2653593) 1 NC_006370.1 hemolysin secretion protein HylB 2653593 3125323 PBPRA2303 Photobacterium profundum SS9 hemolysin secretion protein HylB YP_130491.1 2651947 R 298386 CDS YP_130492.1 54309472 3124261 complement(2654042..2654386) 1 NC_006370.1 hypothetical protein 2654386 3124261 PBPRA2304 Photobacterium profundum SS9 hypothetical protein YP_130492.1 2654042 R 298386 CDS YP_130493.1 54309473 3124509 2655037..2655372 1 NC_006370.1 hypothetical protein 2655372 3124509 PBPRA2306 Photobacterium profundum SS9 hypothetical protein YP_130493.1 2655037 D 298386 CDS YP_130494.1 54309474 3122784 complement(2655404..2656309) 1 NC_006370.1 DMT family permease 2656309 3122784 PBPRA2307 Photobacterium profundum SS9 DMT family permease YP_130494.1 2655404 R 298386 CDS YP_130495.1 54309475 3122627 2656462..2657913 1 NC_006370.1 transcriptional regulator 2657913 3122627 PBPRA2308 Photobacterium profundum SS9 transcriptional regulator YP_130495.1 2656462 D 298386 CDS YP_130496.1 54309476 3123447 complement(2658011..2658856) 1 NC_006370.1 hypothetical protein 2658856 3123447 PBPRA2309 Photobacterium profundum SS9 hypothetical protein YP_130496.1 2658011 R 298386 CDS YP_130497.1 54309477 3124703 complement(2658940..2659374) 1 NC_006370.1 transposase 2659374 3124703 PBPRA2310 Photobacterium profundum SS9 transposase YP_130497.1 2658940 R 298386 CDS YP_130498.1 54309478 3123308 complement(2660450..2661574) 1 NC_006370.1 transmembrane protein 2661574 3123308 PBPRA2311 Photobacterium profundum SS9 transmembrane protein YP_130498.1 2660450 R 298386 CDS YP_130499.1 54309479 3122814 complement(2661574..2662608) 1 NC_006370.1 ABC-type multidrug transport system, ATPase component 2662608 3122814 PBPRA2312 Photobacterium profundum SS9 ABC-type multidrug transport system, ATPase component YP_130499.1 2661574 R 298386 CDS YP_130500.1 54309480 3123673 complement(2662532..2663494) 1 NC_006370.1 hypothetical protein 2663494 3123673 PBPRA2313 Photobacterium profundum SS9 hypothetical protein YP_130500.1 2662532 R 298386 CDS YP_130501.1 54309481 3124607 complement(2663695..2665305) 1 NC_006370.1 FAD-dependent dehydrogenase 2665305 3124607 PBPRA2314 Photobacterium profundum SS9 FAD-dependent dehydrogenase YP_130501.1 2663695 R 298386 CDS YP_130502.1 54309482 3124875 2665456..2665620 1 NC_006370.1 hypothetical protein 2665620 3124875 PBPRA2315 Photobacterium profundum SS9 hypothetical protein YP_130502.1 2665456 D 298386 CDS YP_130503.1 54309483 3122107 2665721..2666011 1 NC_006370.1 hypothetical protein 2666011 3122107 PBPRA2316 Photobacterium profundum SS9 hypothetical protein YP_130503.1 2665721 D 298386 CDS YP_130504.1 54309484 3122414 complement(2666099..2666461) 1 NC_006370.1 hypothetical protein 2666461 3122414 PBPRA2317 Photobacterium profundum SS9 hypothetical protein YP_130504.1 2666099 R 298386 CDS YP_130505.1 54309485 3122741 complement(2666739..2669843) 1 NC_006370.1 AcrB/D/F family transporter 2669843 3122741 PBPRA2318 Photobacterium profundum SS9 AcrB/D/F family transporter YP_130505.1 2666739 R 298386 CDS YP_130506.1 54309486 3123257 complement(2669844..2670971) 1 NC_006370.1 membrane-fusion protein 2670971 3123257 PBPRA2319 Photobacterium profundum SS9 membrane-fusion protein YP_130506.1 2669844 R 298386 CDS YP_130507.1 54309487 3121988 2671113..2672048 1 NC_006370.1 LysR family transcriptional regulator 2672048 3121988 PBPRA2320 Photobacterium profundum SS9 LysR family transcriptional regulator YP_130507.1 2671113 D 298386 CDS YP_130508.1 54309488 3121992 2672450..2673688 1 NC_006370.1 MFS transporter 2673688 3121992 PBPRA2321 Photobacterium profundum SS9 MFS transporter YP_130508.1 2672450 D 298386 CDS YP_130509.1 54309489 3124708 complement(2673837..2674736) 1 NC_006370.1 metalloprotease; heat shock protein HtpX 2674736 3124708 PBPRA2322 Photobacterium profundum SS9 heat shock protein HtpX YP_130509.1 2673837 R 298386 CDS YP_130510.1 54309490 3122202 2675371..2675652 1 NC_006370.1 sulfate permease 2675652 3122202 PBPRA2323 Photobacterium profundum SS9 sulfate permease YP_130510.1 2675371 D 298386 CDS YP_130511.1 54309491 3122206 2675786..2676847 1 NC_006370.1 sulfate permease 2676847 3122206 PBPRA2324 Photobacterium profundum SS9 sulfate permease YP_130511.1 2675786 D 298386 CDS YP_130512.1 54309492 3122180 2676923..2677696 1 NC_006370.1 hypothetical protein 2677696 3122180 PBPRA2325 Photobacterium profundum SS9 hypothetical protein YP_130512.1 2676923 D 298386 CDS YP_130513.1 54309493 3122210 complement(2678676..2679338) 1 NC_006370.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 2679338 bioD 3122210 bioD Photobacterium profundum SS9 dithiobiotin synthetase YP_130513.1 2678676 R 298386 CDS YP_130514.1 54309494 3122038 complement(2679331..2680170) 1 NC_006370.1 biotin synthesis protein BioC 2680170 3122038 PBPRA2327 Photobacterium profundum SS9 biotin synthesis protein BioC YP_130514.1 2679331 R 298386 CDS YP_130515.1 54309495 3122067 complement(2680160..2681386) 1 NC_006370.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 2681386 3122067 PBPRA2328 Photobacterium profundum SS9 8-amino-7-oxononanoate synthase YP_130515.1 2680160 R 298386 CDS YP_130516.1 54309496 3125388 complement(2681325..2682377) 1 NC_006370.1 biotin synthase 2682377 3125388 PBPRA2329 Photobacterium profundum SS9 biotin synthase YP_130516.1 2681325 R 298386 CDS YP_130517.1 54309497 3124720 2682530..2683816 1 NC_006370.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 2683816 3124720 PBPRA2330 Photobacterium profundum SS9 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_130517.1 2682530 D 298386 CDS YP_130518.1 54309498 3124796 2683994..2684560 1 NC_006370.1 hypothetical protein 2684560 3124796 PBPRA2331 Photobacterium profundum SS9 hypothetical protein YP_130518.1 2683994 D 298386 CDS YP_130519.1 54309499 3122251 complement(2684635..2685849) 1 NC_006370.1 ROK family transcriptional regulator 2685849 3122251 PBPRA2332 Photobacterium profundum SS9 ROK family transcriptional regulator YP_130519.1 2684635 R 298386 CDS YP_130520.1 54309500 3122048 2686131..2686799 1 NC_006370.1 organic radical activating enzyme 2686799 3122048 PBPRA2333 Photobacterium profundum SS9 organic radical activating enzyme YP_130520.1 2686131 D 298386 CDS YP_130521.1 54309501 3122338 2687096..2689936 1 NC_006370.1 hyothetical protein 2689936 3122338 PBPRA2334 Photobacterium profundum SS9 hyothetical protein YP_130521.1 2687096 D 298386 CDS YP_130522.1 54309502 3122304 2690272..2691672 1 NC_006370.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 2691672 asnC 3122304 asnC Photobacterium profundum SS9 asparaginyl-tRNA synthetase YP_130522.1 2690272 D 298386 CDS YP_130523.1 54309503 3122290 complement(2691937..2693112) 1 NC_006370.1 Na(+)/H(+)-dicarboxylate symporter 2693112 3122290 PBPRA2336 Photobacterium profundum SS9 Na(+)/H(+)-dicarboxylate symporter YP_130523.1 2691937 R 298386 CDS YP_130524.1 54309504 3124385 2694009..2694833 1 NC_006370.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase 2694833 3124385 PBPRA2337 Photobacterium profundum SS9 hydroxyethylthiazole kinase YP_130524.1 2694009 D 298386 CDS YP_130525.1 54309505 3122620 complement(2695060..2695530) 1 NC_006370.1 hypothetical protein 2695530 3122620 PBPRA2338 Photobacterium profundum SS9 hypothetical protein YP_130525.1 2695060 R 298386 CDS YP_130526.1 54309506 3123573 2695892..2696668 1 NC_006370.1 enoyl-CoA hydratase 2696668 3123573 PBPRA2339 Photobacterium profundum SS9 enoyl-CoA hydratase YP_130526.1 2695892 D 298386 CDS YP_130527.1 54309507 3123462 complement(2696791..2698197) 1 NC_006370.1 transport protein 2698197 3123462 PBPRA2340 Photobacterium profundum SS9 transport protein YP_130527.1 2696791 R 298386 CDS YP_130528.1 54309508 3123425 2698703..2699893 1 NC_006370.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2699893 3123425 PBPRA2341 Photobacterium profundum SS9 aromatic amino acid aminotransferase YP_130528.1 2698703 D 298386 CDS YP_130529.1 54309509 3123120 complement(2700020..2700325) 1 NC_006370.1 hypothetical protein 2700325 3123120 PBPRA2342 Photobacterium profundum SS9 hypothetical protein YP_130529.1 2700020 R 298386 CDS YP_130530.1 54309510 3122737 complement(2700647..2701057) 1 NC_006370.1 hypothetical protein 2701057 3122737 PBPRA2343 Photobacterium profundum SS9 hypothetical protein YP_130530.1 2700647 R 298386 CDS YP_130531.1 54309511 3122664 2701562..2702227 1 NC_006370.1 hypothetical protein 2702227 3122664 PBPRA2344 Photobacterium profundum SS9 hypothetical protein YP_130531.1 2701562 D 298386 CDS YP_130532.1 54309512 3122015 complement(2702270..2703607) 1 NC_006370.1 membrane protein regulates uhpT expression; regulatory protein UhpC 2703607 3122015 PBPRA2345 Photobacterium profundum SS9 regulatory protein UhpC YP_130532.1 2702270 R 298386 CDS YP_130533.1 54309513 3122188 complement(2703673..2705268) 1 NC_006370.1 Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph; sensory histidine kinase UhpB 2705268 3122188 PBPRA2346 Photobacterium profundum SS9 sensory histidine kinase UhpB YP_130533.1 2703673 R 298386 CDS YP_130534.1 54309514 3124017 complement(2705268..2705963) 1 NC_006370.1 LuxR family transcriptional regulator 2705963 3124017 PBPRA2347 Photobacterium profundum SS9 LuxR family transcriptional regulator YP_130534.1 2705268 R 298386 CDS YP_130535.2 161936303 3122563 complement(2706096..2707496) 1 NC_006370.1 cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate; sugar phosphate antiporter 2707496 uhpT 3122563 uhpT Photobacterium profundum SS9 sugar phosphate antiporter YP_130535.2 2706096 R 298386 CDS YP_130536.1 54309516 3124373 complement(2707938..2708648) 1 NC_006370.1 glyoxylase II family protein 2708648 3124373 PBPRA2349 Photobacterium profundum SS9 glyoxylase II family protein YP_130536.1 2707938 R 298386 CDS YP_130537.1 54309517 3122388 complement(2708832..2709380) 1 NC_006370.1 hypothetical protein 2709380 3122388 PBPRA2350 Photobacterium profundum SS9 hypothetical protein YP_130537.1 2708832 R 298386 CDS YP_130538.1 54309518 3122435 complement(2709534..2711252) 1 NC_006370.1 hypothetical protein 2711252 3122435 PBPRA2351 Photobacterium profundum SS9 hypothetical protein YP_130538.1 2709534 R 298386 CDS YP_130539.1 54309519 3123118 2711766..2712260 1 NC_006370.1 MarR family transcriptional regulator 2712260 3123118 PBPRA2352 Photobacterium profundum SS9 MarR family transcriptional regulator YP_130539.1 2711766 D 298386 CDS YP_130540.1 54309520 3124004 2712463..2713320 1 NC_006370.1 LysR family transcriptional regulator 2713320 3124004 PBPRA2353 Photobacterium profundum SS9 LysR family transcriptional regulator YP_130540.1 2712463 D 298386 CDS YP_130541.1 54309521 3123281 complement(2713280..2714050) 1 NC_006370.1 hypothetical protein 2714050 3123281 PBPRA2354 Photobacterium profundum SS9 hypothetical protein YP_130541.1 2713280 R 298386 CDS YP_130542.1 54309522 3124559 complement(2714241..2715194) 1 NC_006370.1 LysR family transcriptional regulator 2715194 3124559 PBPRA2355 Photobacterium profundum SS9 LysR family transcriptional regulator YP_130542.1 2714241 R 298386 CDS YP_130543.1 54309523 3124273 2715349..2716029 1 NC_006370.1 aspartate racemase 2716029 3124273 PBPRA2356 Photobacterium profundum SS9 aspartate racemase YP_130543.1 2715349 D 298386 CDS YP_130544.1 54309524 3123273 2716527..2718110 1 NC_006370.1 L-lactate permease, LctP 2718110 3123273 PBPRA2357 Photobacterium profundum SS9 L-lactate permease, LctP YP_130544.1 2716527 D 298386 CDS YP_130545.1 54309525 3124878 2718262..2718981 1 NC_006370.1 dehydrogenase subunit 2718981 3124878 PBPRA2358 Photobacterium profundum SS9 dehydrogenase subunit YP_130545.1 2718262 D 298386 CDS YP_130546.1 54309526 3122229 2718994..2720403 1 NC_006370.1 electron transport protein ykgF 2720403 3122229 PBPRA2359 Photobacterium profundum SS9 electron transport protein ykgF YP_130546.1 2718994 D 298386 CDS YP_130547.1 54309527 3123948 2720421..2721167 1 NC_006370.1 hypothetical protein 2721167 3123948 PBPRA2360 Photobacterium profundum SS9 hypothetical protein YP_130547.1 2720421 D 298386 CDS YP_130548.1 54309528 3121945 2721306..2722211 1 NC_006370.1 LysR family transcriptional regulator 2722211 3121945 PBPRA2361 Photobacterium profundum SS9 LysR family transcriptional regulator YP_130548.1 2721306 D 298386 CDS YP_130549.1 54309529 3125295 complement(2722284..2722766) 1 NC_006370.1 hypothetical protein 2722766 3125295 PBPRA2362 Photobacterium profundum SS9 hypothetical protein YP_130549.1 2722284 R 298386 CDS YP_130550.1 54309530 3123125 complement(2722901..2725378) 1 NC_006370.1 trimethylamine-N-oxide reductase 2725378 3123125 PBPRA2363 Photobacterium profundum SS9 trimethylamine-N-oxide reductase YP_130550.1 2722901 R 298386 CDS YP_130551.1 54309531 3123928 complement(2725450..2726634) 1 NC_006370.1 cytochrome c-type protein TorC 2726634 3123928 PBPRA2364 Photobacterium profundum SS9 cytochrome c-type protein TorC YP_130551.1 2725450 R 298386 CDS YP_130552.1 54309532 3122659 2727281..2728585 1 NC_006370.1 hypothetical protein 2728585 3122659 PBPRA2365 Photobacterium profundum SS9 hypothetical protein YP_130552.1 2727281 D 298386 CDS YP_130553.1 54309533 3125484 complement(2728745..2729650) 1 NC_006370.1 hypothetical protein 2729650 3125484 PBPRA2366 Photobacterium profundum SS9 hypothetical protein YP_130553.1 2728745 R 298386 CDS YP_130554.1 54309534 3124751 complement(2729900..2730934) 1 NC_006370.1 hypothetical protein 2730934 3124751 PBPRA2367 Photobacterium profundum SS9 hypothetical protein YP_130554.1 2729900 R 298386 CDS YP_130555.1 54309535 3124822 complement(2731477..2732046) 1 NC_006370.1 hypothetical protein 2732046 3124822 PBPRA2368 Photobacterium profundum SS9 hypothetical protein YP_130555.1 2731477 R 298386 CDS YP_130556.1 54309536 3125360 complement(2734240..2735256) 1 NC_006370.1 transposase 2735256 3125360 PBPRA2369 Photobacterium profundum SS9 transposase YP_130556.1 2734240 R 298386 CDS YP_130557.1 54309537 3124884 2735423..2735944 1 NC_006370.1 transposase 2735944 3124884 PBPRA2370 Photobacterium profundum SS9 transposase YP_130557.1 2735423 D 298386 CDS YP_130558.1 54309538 3124490 2735977..2736996 1 NC_006370.1 transposase 2736996 3124490 PBPRA2371 Photobacterium profundum SS9 transposase YP_130558.1 2735977 D 298386 CDS YP_130559.1 54309539 3122725 2737062..2737532 1 NC_006370.1 transposase and inactivated derivative 2737532 3122725 PBPRA2372 Photobacterium profundum SS9 transposase and inactivated derivative YP_130559.1 2737062 D 298386 CDS YP_130560.1 54309540 3123488 2737534..2737971 1 NC_006370.1 transposase and inactivated derivative 2737971 3123488 PBPRA2373 Photobacterium profundum SS9 transposase and inactivated derivative YP_130560.1 2737534 D 298386 CDS YP_130561.1 54309541 3123955 2738310..2738657 1 NC_006370.1 transposase 2738657 3123955 PBPRA2374 Photobacterium profundum SS9 transposase YP_130561.1 2738310 D 298386 CDS YP_130562.1 54309542 3125514 2738767..2740311 1 NC_006370.1 hypothetical protein 2740311 3125514 PBPRA2375 Photobacterium profundum SS9 hypothetical protein YP_130562.1 2738767 D 298386 CDS YP_130563.1 54309543 3123345 complement(2741041..2745501) 1 NC_006370.1 SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; cell division protein MukB 2745501 mukB 3123345 mukB Photobacterium profundum SS9 cell division protein MukB YP_130563.1 2741041 R 298386 CDS YP_130564.1 54309544 3122932 complement(2745501..2746292) 1 NC_006370.1 acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; condesin subunit E 2746292 3122932 PBPRA2377 Photobacterium profundum SS9 condesin subunit E YP_130564.1 2745501 R 298386 CDS YP_130565.1 54309545 3124981 complement(2746216..2747538) 1 NC_006370.1 acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; condesin subunit F 2747538 3124981 PBPRA2378 Photobacterium profundum SS9 condesin subunit F YP_130565.1 2746216 R 298386 CDS YP_130566.1 54309546 3124872 complement(2747607..2748419) 1 NC_006370.1 involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens; expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc; NO elicits release of Zn ions from SmtA; metallothionein SmtA 2748419 3124872 PBPRA2379 Photobacterium profundum SS9 metallothionein SmtA YP_130566.1 2747607 R 298386 CDS YP_130567.1 54309547 3122260 2748542..2749396 1 NC_006370.1 hypothetical protein 2749396 3122260 PBPRA2380 Photobacterium profundum SS9 hypothetical protein YP_130567.1 2748542 D 298386 CDS YP_130568.1 54309548 3122425 2749728..2751125 1 NC_006370.1 sodium/dicarboxylate symporter 2751125 3122425 PBPRA2381 Photobacterium profundum SS9 sodium/dicarboxylate symporter YP_130568.1 2749728 D 298386 CDS YP_130569.1 54309549 3122789 complement(2751275..2752021) 1 NC_006370.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 2752021 3122789 PBPRA2382 Photobacterium profundum SS9 3-deoxy-manno-octulosonate cytidylyltransferase YP_130569.1 2751275 R 298386 CDS YP_130570.1 54309550 3125177 complement(2752021..2752200) 1 NC_006370.1 hypothetical protein 2752200 3125177 PBPRA2383 Photobacterium profundum SS9 hypothetical protein YP_130570.1 2752021 R 298386 CDS YP_130571.1 54309551 3123235 complement(2752181..2753215) 1 NC_006370.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 2753215 lpxK 3123235 lpxK Photobacterium profundum SS9 tetraacyldisaccharide 4'-kinase YP_130571.1 2752181 R 298386 CDS YP_130572.1 54309552 3123201 complement(2753215..2754972) 1 NC_006370.1 involved in the transport of lipid A across the inner membrane; lipid transporter ATP-binding/permease protein 2754972 3123201 PBPRA2385 Photobacterium profundum SS9 lipid transporter ATP-binding/permease protein YP_130572.1 2753215 R 298386 CDS YP_130573.1 54309553 3122967 complement(2755159..2757573) 1 NC_006370.1 Rec2-like protein 2757573 3122967 PBPRA2386 Photobacterium profundum SS9 Rec2-like protein YP_130573.1 2755159 R 298386 CDS YP_130574.1 54309554 3123453 2757690..2758202 1 NC_006370.1 hypothetical protein 2758202 3123453 PBPRA2387 Photobacterium profundum SS9 hypothetical protein YP_130574.1 2757690 D 298386 CDS YP_130575.1 54309555 3122572 complement(2758511..2759755) 1 NC_006370.1 part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolE 2759755 3122572 PBPRA2388 Photobacterium profundum SS9 outer membrane-specific lipoprotein transporter subunit LolE YP_130575.1 2758511 R 298386 CDS YP_130576.1 54309556 3124806 complement(2759755..2760504) 1 NC_006370.1 ABC transporter ATP-binding protein 2760504 3124806 PBPRA2389 Photobacterium profundum SS9 ABC transporter ATP-binding protein YP_130576.1 2759755 R 298386 CDS YP_130577.1 54309557 3122540 complement(2760437..2761645) 1 NC_006370.1 ABC transporter integral membrane subunit 2761645 3122540 PBPRA2390 Photobacterium profundum SS9 ABC transporter integral membrane subunit YP_130577.1 2760437 R 298386 CDS YP_130578.1 54309558 3123476 2761894..2762490 1 NC_006370.1 hypothetical protein 2762490 3123476 PBPRA2391 Photobacterium profundum SS9 hypothetical protein YP_130578.1 2761894 D 298386 CDS YP_130579.1 54309559 3124740 2762500..2765955 1 NC_006370.1 transcription-repair coupling factor 2765955 3124740 PBPRA2392 Photobacterium profundum SS9 transcription-repair coupling factor YP_130579.1 2762500 D 298386 CDS YP_130580.1 54309560 3125146 2766044..2766940 1 NC_006370.1 hypothetical protein 2766940 3125146 PBPRA2393 Photobacterium profundum SS9 hypothetical protein YP_130580.1 2766044 D 298386 CDS YP_130581.1 54309561 3124901 2767128..2767685 1 NC_006370.1 ribosomal-protein-serine acetyltransferase 2767685 3124901 PBPRA2394 Photobacterium profundum SS9 ribosomal-protein-serine acetyltransferase YP_130581.1 2767128 D 298386 CDS YP_130582.1 54309562 3122033 2767729..2768202 1 NC_006370.1 peptidyl-prolyl cis-trans isomerase, FKBP-type 2768202 3122033 PBPRA2395 Photobacterium profundum SS9 peptidyl-prolyl cis-trans isomerase, FKBP-type YP_130582.1 2767729 D 298386 CDS YP_130583.1 54309563 3122681 complement(2768521..2769810) 1 NC_006370.1 NADH dehydrogenase 2769810 3122681 PBPRA2396 Photobacterium profundum SS9 NADH dehydrogenase YP_130583.1 2768521 R 298386 CDS YP_130584.1 54309564 3125049 complement(2769911..2770447) 1 NC_006370.1 hypothetical protein 2770447 3125049 PBPRA2397 Photobacterium profundum SS9 hypothetical protein YP_130584.1 2769911 R 298386 CDS YP_130585.1 54309565 3123393 complement(2771519..2772451) 1 NC_006370.1 hypothetical protein 2772451 3123393 PBPRA2399 Photobacterium profundum SS9 hypothetical protein YP_130585.1 2771519 R 298386 CDS YP_130586.1 54309566 3122960 complement(2772559..2773152) 1 NC_006370.1 hypothetical protein 2773152 3122960 PBPRA2400 Photobacterium profundum SS9 hypothetical protein YP_130586.1 2772559 R 298386 CDS YP_130587.1 54309567 3122160 complement(2773176..2773562) 1 NC_006370.1 hypothetical protein 2773562 3122160 PBPRA2401 Photobacterium profundum SS9 hypothetical protein YP_130587.1 2773176 R 298386 CDS YP_130588.1 54309568 3122419 complement(2773562..2774962) 1 NC_006370.1 hypothetical protein 2774962 3122419 PBPRA2402 Photobacterium profundum SS9 hypothetical protein YP_130588.1 2773562 R 298386 CDS YP_130589.1 54309569 3123233 complement(2775127..2775477) 1 NC_006370.1 Hit family diadenosine tetraphosphate hydrolase 2775477 3123233 PBPRA2403 Photobacterium profundum SS9 Hit family diadenosine tetraphosphate hydrolase YP_130589.1 2775127 R 298386 CDS YP_130590.1 54309570 3124904 2775863..2777866 1 NC_006370.1 methyl-accepting chemotaxis protein 2777866 3124904 PBPRA2404 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_130590.1 2775863 D 298386 CDS YP_130591.1 54309571 3123036 2778105..2779133 1 NC_006370.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 2779133 3123036 PBPRA2405 Photobacterium profundum SS9 dihydroorotase YP_130591.1 2778105 D 298386 CDS YP_130592.1 54309572 3123050 complement(2779283..2782351) 1 NC_006370.1 AcrB, cation/multidrug efflux pump 2782351 3123050 PBPRA2406 Photobacterium profundum SS9 AcrB, cation/multidrug efflux pump YP_130592.1 2779283 R 298386 CDS YP_130593.1 54309573 3125074 complement(2782351..2783439) 1 NC_006370.1 periplasmic linker protein 2783439 3125074 PBPRA2407 Photobacterium profundum SS9 periplasmic linker protein YP_130593.1 2782351 R 298386 CDS YP_130594.1 54309574 3125495 complement(2783441..2784475) 1 NC_006370.1 hypothetical protein 2784475 3125495 PBPRA2408 Photobacterium profundum SS9 hypothetical protein YP_130594.1 2783441 R 298386 CDS YP_130595.1 54309575 3124008 complement(2784820..2786328) 1 NC_006370.1 fumarate hydratase, class I 2786328 3124008 PBPRA2409 Photobacterium profundum SS9 fumarate hydratase, class I YP_130595.1 2784820 R 298386 CDS YP_130596.1 54309576 3124836 2786644..2788047 1 NC_006370.1 catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; para-aminobenzoate synthase component I 2788047 3124836 PBPRA2410 Photobacterium profundum SS9 para-aminobenzoate synthase component I YP_130596.1 2786644 D 298386 CDS YP_130597.1 54309577 3125328 2788160..2788759 1 NC_006370.1 MutT/nudix family protein 2788759 3125328 PBPRA2411 Photobacterium profundum SS9 MutT/nudix family protein YP_130597.1 2788160 D 298386 CDS YP_130598.1 54309578 3123877 2788951..2790204 1 NC_006370.1 serine transporter 2790204 3123877 PBPRA2412 Photobacterium profundum SS9 serine transporter YP_130598.1 2788951 D 298386 CDS YP_130599.1 54309579 3123450 2790449..2791810 1 NC_006370.1 L-serine dehydratase 1 2791810 3123450 PBPRA2413 Photobacterium profundum SS9 L-serine dehydratase 1 YP_130599.1 2790449 D 298386 CDS YP_130600.1 54309580 3122116 complement(2791925..2792887) 1 NC_006370.1 hypothetical protein 2792887 3122116 PBPRA2414 Photobacterium profundum SS9 hypothetical protein YP_130600.1 2791925 R 298386 CDS YP_130601.1 54309581 3123735 complement(2793360..2793953) 1 NC_006370.1 hypothetical protein 2793953 3123735 PBPRA2415 Photobacterium profundum SS9 hypothetical protein YP_130601.1 2793360 R 298386 CDS YP_130602.1 54309582 3124535 complement(2794410..2795618) 1 NC_006370.1 hypothetical protein 2795618 3124535 PBPRA2416 Photobacterium profundum SS9 hypothetical protein YP_130602.1 2794410 R 298386 CDS YP_130603.1 54309583 3122914 complement(2795773..2796504) 1 NC_006370.1 NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds; nitroreductase A 2796504 3122914 PBPRA2417 Photobacterium profundum SS9 nitroreductase A YP_130603.1 2795773 R 298386 CDS YP_130604.1 54309584 3122897 complement(2796694..2797902) 1 NC_006370.1 iron-containing alcohol dehydrogenase 2797902 3122897 PBPRA2418 Photobacterium profundum SS9 iron-containing alcohol dehydrogenase YP_130604.1 2796694 R 298386 CDS YP_130605.2 161936302 3122600 2798559..2798822 1 NC_006370.1 functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 1 2798822 grxA 3122600 grxA Photobacterium profundum SS9 glutaredoxin 1 YP_130605.2 2798559 D 298386 CDS YP_130606.1 54309586 3122360 2799162..2800799 1 NC_006370.1 hypothetical protein 2800799 3122360 PBPRA2420 Photobacterium profundum SS9 hypothetical protein YP_130606.1 2799162 D 298386 CDS YP_130607.1 54309587 3122964 2801015..2801704 1 NC_006370.1 transcriptional regulatory protein PhoP 2801704 3122964 PBPRA2421 Photobacterium profundum SS9 transcriptional regulatory protein PhoP YP_130607.1 2801015 D 298386 CDS YP_130608.1 54309588 3123818 2801701..2803047 1 NC_006370.1 sensor protein PhoQ 2803047 3123818 PBPRA2422 Photobacterium profundum SS9 sensor protein PhoQ YP_130608.1 2801701 D 298386 CDS YP_130609.2 229557966 3123974 complement(2803121..2804323) 1 NC_006370.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 2804323 3123974 PBPRA2423 Photobacterium profundum SS9 trans-2-enoyl-CoA reductase YP_130609.2 2803121 R 298386 CDS YP_130610.1 54309590 3124706 complement(2804574..2806850) 1 NC_006370.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2806850 3124706 PBPRA2424 Photobacterium profundum SS9 acyl-CoA dehydrogenase YP_130610.1 2804574 R 298386 CDS YP_130611.1 54309591 3124649 2808252..2809460 1 NC_006370.1 transposase 2809460 3124649 PBPRA2426 Photobacterium profundum SS9 transposase YP_130611.1 2808252 D 298386 CDS YP_130612.1 54309592 3125372 complement(2809564..2810688) 1 NC_006370.1 carboxypeptidase G2 2810688 3125372 PBPRA2427 Photobacterium profundum SS9 carboxypeptidase G2 YP_130612.1 2809564 R 298386 CDS YP_130613.1 54309593 3125314 complement(2811609..2812043) 1 NC_006370.1 transposase 2812043 3125314 PBPRA2428 Photobacterium profundum SS9 transposase YP_130613.1 2811609 R 298386 CDS YP_130614.1 54309594 3125531 complement(2813129..2813962) 1 NC_006370.1 hypothetical protein 2813962 3125531 PBPRA2429 Photobacterium profundum SS9 hypothetical protein YP_130614.1 2813129 R 298386 CDS YP_130615.1 54309595 3122439 2814554..2815408 1 NC_006370.1 Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 2815408 3122439 PBPRA2430 Photobacterium profundum SS9 DNA-binding transcriptional regulator HexR YP_130615.1 2814554 D 298386 CDS YP_130616.1 54309596 3125407 2815722..2817179 1 NC_006370.1 pyruvate kinase II 2817179 3125407 PBPRA2431 Photobacterium profundum SS9 pyruvate kinase II YP_130616.1 2815722 D 298386 CDS YP_130617.1 54309597 3122570 complement(2817312..2817893) 1 NC_006370.1 ribosomal-protein-alanine acetyltransferase 2817893 3122570 PBPRA2432 Photobacterium profundum SS9 ribosomal-protein-alanine acetyltransferase YP_130617.1 2817312 R 298386 CDS YP_130618.1 54309598 3123407 2817922..2818425 1 NC_006370.1 6-O-methylguanine-DNA methyltransferase 2818425 3123407 PBPRA2433 Photobacterium profundum SS9 6-O-methylguanine-DNA methyltransferase YP_130618.1 2817922 D 298386 CDS YP_130619.1 54309599 3123945 complement(2818487..2820022) 1 NC_006370.1 transcriptional regulator TyrR 2820022 3123945 PBPRA2434 Photobacterium profundum SS9 transcriptional regulator TyrR YP_130619.1 2818487 R 298386 CDS YP_130620.1 54309600 3122957 complement(2820268..2821314) 1 NC_006370.1 hypothetical protein 2821314 3122957 PBPRA2435 Photobacterium profundum SS9 hypothetical protein YP_130620.1 2820268 R 298386 CDS YP_130621.1 54309601 3123961 complement(2821311..2822747) 1 NC_006370.1 ATPase 2822747 3123961 PBPRA2436 Photobacterium profundum SS9 ATPase YP_130621.1 2821311 R 298386 CDS YP_130622.1 54309602 3125187 complement(2823157..2823543) 1 NC_006370.1 phage shock protein C 2823543 3125187 PBPRA2437 Photobacterium profundum SS9 phage shock protein C YP_130622.1 2823157 R 298386 CDS YP_130623.1 54309603 3125351 complement(2823543..2823770) 1 NC_006370.1 acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B 2823770 pspB 3125351 pspB Photobacterium profundum SS9 phage shock protein B YP_130623.1 2823543 R 298386 CDS YP_130624.1 54309604 3123986 complement(2823875..2824540) 1 NC_006370.1 phage shock protein A 2824540 3123986 PBPRA2439 Photobacterium profundum SS9 phage shock protein A YP_130624.1 2823875 R 298386 CDS YP_130625.1 54309605 3124558 2824728..2825741 1 NC_006370.1 psp operon transcriptional activator 2825741 3124558 PBPRA2440 Photobacterium profundum SS9 psp operon transcriptional activator YP_130625.1 2824728 D 298386 CDS YP_130626.1 54309606 3125226 2825939..2827558 1 NC_006370.1 peptide ABC transporter substrate-binding protein 2827558 3125226 PBPRA2441 Photobacterium profundum SS9 peptide ABC transporter substrate-binding protein YP_130626.1 2825939 D 298386 CDS YP_130627.1 54309607 3123097 2827562..2828524 1 NC_006370.1 peptide ABC transporter, permease protein 2828524 3123097 PBPRA2442 Photobacterium profundum SS9 peptide ABC transporter, permease protein YP_130627.1 2827562 D 298386 CDS YP_130628.1 54309608 3125494 2828511..2829398 1 NC_006370.1 peptide ABC transporter, permease protein 2829398 3125494 PBPRA2443 Photobacterium profundum SS9 peptide ABC transporter, permease protein YP_130628.1 2828511 D 298386 CDS YP_130629.1 54309609 3125154 2829399..2830397 1 NC_006370.1 peptide ABC transporter, ATP-binding protein 2830397 3125154 PBPRA2444 Photobacterium profundum SS9 peptide ABC transporter, ATP-binding protein YP_130629.1 2829399 D 298386 CDS YP_130630.1 54309610 3125527 2830394..2831218 1 NC_006370.1 peptide ABC transporter ATPase 2831218 3125527 PBPRA2445 Photobacterium profundum SS9 peptide ABC transporter ATPase YP_130630.1 2830394 D 298386 CDS YP_130631.1 54309611 3124334 complement(2831295..2831990) 1 NC_006370.1 OMP decarboxylase; OMPDCase; OMPdecase; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 2831990 3124334 PBPRA2446 Photobacterium profundum SS9 orotidine 5'-phosphate decarboxylase YP_130631.1 2831295 R 298386 CDS YP_130632.1 54309612 3122140 complement(2832108..2833277) 1 NC_006370.1 tetratricopeptide repeat protein 2833277 3122140 PBPRA2447 Photobacterium profundum SS9 tetratricopeptide repeat protein YP_130632.1 2832108 R 298386 CDS YP_130633.1 54309613 3124541 complement(2833284..2833568) 1 NC_006370.1 hypothetical protein 2833568 3124541 PBPRA2448 Photobacterium profundum SS9 hypothetical protein YP_130633.1 2833284 R 298386 CDS YP_130634.1 54309614 3123786 complement(2833699..2833989) 1 NC_006370.1 integration host factor, beta subunit 2833989 3123786 PBPRA2449 Photobacterium profundum SS9 integration host factor, beta subunit YP_130634.1 2833699 R 298386 CDS YP_130635.1 54309615 3123852 complement(2834072..2835742) 1 NC_006370.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2835742 rpsA 3123852 rpsA Photobacterium profundum SS9 30S ribosomal protein S1 YP_130635.1 2834072 R 298386 CDS YP_130636.1 54309616 3122550 complement(2835855..2836586) 1 NC_006370.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 2836586 cmk 3122550 cmk Photobacterium profundum SS9 cytidylate kinase YP_130636.1 2835855 R 298386 CDS YP_130637.1 54309617 3125473 complement(2836811..2838097) 1 NC_006370.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 2838097 3125473 PBPRA2452 Photobacterium profundum SS9 3-phosphoshikimate 1-carboxyvinyltransferase YP_130637.1 2836811 R 298386 CDS YP_130638.1 54309618 3125467 complement(2838806..2840065) 1 NC_006370.1 lipoprotein 2840065 3125467 PBPRA2454 Photobacterium profundum SS9 lipoprotein YP_130638.1 2838806 R 298386 CDS YP_130639.1 54309619 3124442 complement(2840415..2841497) 1 NC_006370.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 2841497 3124442 PBPRA2455 Photobacterium profundum SS9 phosphoserine aminotransferase YP_130639.1 2840415 R 298386 CDS YP_130640.1 54309620 3122365 complement(2842025..2844709) 1 NC_006370.1 DNA topoisomerase (ATP-hydrolyzing) 2844709 3122365 PBPRA2456 Photobacterium profundum SS9 DNA topoisomerase (ATP-hydrolyzing) YP_130640.1 2842025 R 298386 CDS YP_130641.1 54309621 3125435 2845490..2846197 1 NC_006370.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2846197 3125435 PBPRA2457 Photobacterium profundum SS9 3-demethylubiquinone-9 3-methyltransferase YP_130641.1 2845490 D 298386 CDS YP_130642.1 54309622 3125322 2846680..2847357 1 NC_006370.1 phosphoglycolate phosphatase 2847357 3125322 PBPRA2458 Photobacterium profundum SS9 phosphoglycolate phosphatase YP_130642.1 2846680 D 298386 CDS YP_130643.1 54309623 3125355 2847734..2849995 1 NC_006370.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2849995 3125355 PBPRA2459 Photobacterium profundum SS9 ribonucleotide-diphosphate reductase subunit alpha YP_130643.1 2847734 D 298386 CDS YP_130644.1 54309624 3125350 2850046..2851179 1 NC_006370.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 2851179 nrdB 3125350 nrdB Photobacterium profundum SS9 ribonucleotide-diphosphate reductase subunit beta YP_130644.1 2850046 D 298386 CDS YP_130645.1 54309625 3125374 2851176..2851463 1 NC_006370.1 (Fe-S)-binding protein 2851463 3125374 PBPRA2461 Photobacterium profundum SS9 (Fe-S)-binding protein YP_130645.1 2851176 D 298386 CDS YP_130646.1 54309626 3124959 complement(2851625..2852482) 1 NC_006370.1 hypothetical protein 2852482 3124959 PBPRA2462 Photobacterium profundum SS9 hypothetical protein YP_130646.1 2851625 R 298386 CDS YP_130647.1 54309627 3124942 2852781..2853053 1 NC_006370.1 hypothetical protein 2853053 3124942 PBPRA2463 Photobacterium profundum SS9 hypothetical protein YP_130647.1 2852781 D 298386 CDS YP_130648.1 54309628 3125164 complement(2853146..2854369) 1 NC_006370.1 competence damage protein CinA 2854369 3125164 PBPRA2464 Photobacterium profundum SS9 competence damage protein CinA YP_130648.1 2853146 R 298386 CDS YP_130649.1 54309629 3125193 2854754..2856019 1 NC_006370.1 tyrosine-specific transport protein 2856019 3125193 PBPRA2465 Photobacterium profundum SS9 tyrosine-specific transport protein YP_130649.1 2854754 D 298386 CDS YP_130650.1 54309630 3125192 2856333..2857262 1 NC_006370.1 hypothetical protein 2857262 3125192 PBPRA2466 Photobacterium profundum SS9 hypothetical protein YP_130650.1 2856333 D 298386 CDS YP_130651.1 54309631 3125206 2857448..2859439 1 NC_006370.1 hypothetical protein 2859439 3125206 PBPRA2467 Photobacterium profundum SS9 hypothetical protein YP_130651.1 2857448 D 298386 CDS YP_130652.1 54309632 3125022 complement(2859521..2860249) 1 NC_006370.1 hypothetical protein 2860249 3125022 PBPRA2468 Photobacterium profundum SS9 hypothetical protein YP_130652.1 2859521 R 298386 CDS YP_130653.1 54309633 3125274 complement(2860277..2861473) 1 NC_006370.1 hypothetical protein 2861473 3125274 PBPRA2469 Photobacterium profundum SS9 hypothetical protein YP_130653.1 2860277 R 298386 CDS YP_130654.2 161936301 3124968 complement(2861659..2862633) 1 NC_006370.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 2862633 cysB 3124968 cysB Photobacterium profundum SS9 transcriptional regulator CysB YP_130654.2 2861659 R 298386 CDS YP_130655.1 54309635 3125088 2863017..2863745 1 NC_006370.1 hypothetical protein 2863745 3125088 PBPRA2471 Photobacterium profundum SS9 hypothetical protein YP_130655.1 2863017 D 298386 CDS YP_130656.1 54309636 3125436 2863902..2864693 1 NC_006370.1 tRNA-(MSIO[6]A)-hydroxylase 2864693 3125436 PBPRA2472 Photobacterium profundum SS9 tRNA-(MSIO[6]A)-hydroxylase YP_130656.1 2863902 D 298386 CDS YP_130657.1 54309637 3124918 2865072..2866043 1 NC_006370.1 transcriptional regulator CysB-like protein 2866043 3124918 PBPRA2473 Photobacterium profundum SS9 transcriptional regulator CysB-like protein YP_130657.1 2865072 D 298386 CDS YP_130658.1 54309638 3124898 complement(2866144..2867325) 1 NC_006370.1 metal-dependent amidase/aminoacylase/carboxypeptidase 2867325 3124898 PBPRA2474 Photobacterium profundum SS9 metal-dependent amidase/aminoacylase/carboxypeptidase YP_130658.1 2866144 R 298386 CDS YP_130659.1 54309639 3125063 complement(2867325..2867774) 1 NC_006370.1 hypothetical protein 2867774 3125063 PBPRA2475 Photobacterium profundum SS9 hypothetical protein YP_130659.1 2867325 R 298386 CDS YP_130660.1 54309640 3125538 complement(2867767..2868594) 1 NC_006370.1 hypothetical protein 2868594 3125538 PBPRA2476 Photobacterium profundum SS9 hypothetical protein YP_130660.1 2867767 R 298386 CDS YP_130661.1 54309641 3125461 complement(2868976..2871627) 1 NC_006370.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 2871627 3125461 PBPRA2477 Photobacterium profundum SS9 DNA topoisomerase I YP_130661.1 2868976 R 298386 CDS YP_130662.1 54309642 3124927 2872099..2872347 1 NC_006370.1 hypothetical protein 2872347 3124927 PBPRA2478 Photobacterium profundum SS9 hypothetical protein YP_130662.1 2872099 D 298386 CDS YP_130663.1 54309643 3125153 complement(2872502..2872903) 1 NC_006370.1 hypothetical protein 2872903 3125153 PBPRA2479 Photobacterium profundum SS9 hypothetical protein YP_130663.1 2872502 R 298386 CDS YP_130664.1 54309644 3125450 complement(2873036..2874097) 1 NC_006370.1 SohB; periplasmic protein; member of the peptidase S49 family; periplasmic protease 2874097 3125450 PBPRA2480 Photobacterium profundum SS9 periplasmic protease YP_130664.1 2873036 R 298386 CDS YP_130665.1 54309645 3125356 2874413..2875156 1 NC_006370.1 short chain dehydrogenase 2875156 3125356 PBPRA2481 Photobacterium profundum SS9 short chain dehydrogenase YP_130665.1 2874413 D 298386 CDS YP_130666.1 54309646 3125417 complement(2875243..2876376) 1 NC_006370.1 pseudouridine synthase 2876376 3125417 PBPRA2482 Photobacterium profundum SS9 pseudouridine synthase YP_130666.1 2875243 R 298386 CDS YP_130667.1 54309647 3125422 complement(2876607..2877227) 1 NC_006370.1 translation factor 2877227 3125422 PBPRA2483 Photobacterium profundum SS9 translation factor YP_130667.1 2876607 R 298386 CDS YP_130668.1 54309648 3125137 complement(2877224..2878117) 1 NC_006370.1 metal-dependent phosphoesterase 2878117 3125137 PBPRA2484 Photobacterium profundum SS9 metal-dependent phosphoesterase YP_130668.1 2877224 R 298386 CDS YP_130669.1 54309649 3125289 2878429..2879442 1 NC_006370.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; 3-deoxy-7-phosphoheptulonate synthase 2879442 3125289 PBPRA2485 Photobacterium profundum SS9 3-deoxy-7-phosphoheptulonate synthase YP_130669.1 2878429 D 298386 CDS YP_130670.1 54309650 3125472 2879439..2881031 1 NC_006370.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 2881031 3125472 PBPRA2486 Photobacterium profundum SS9 anthranilate synthase component I YP_130670.1 2879439 D 298386 CDS YP_130671.1 54309651 3125271 2881044..2881682 1 NC_006370.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 2881682 3125271 PBPRA2487 Photobacterium profundum SS9 anthranilate synthase component II YP_130671.1 2881044 D 298386 CDS YP_130672.2 161936300 3125230 2881694..2882704 1 NC_006370.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 2882704 trpD 3125230 trpD Photobacterium profundum SS9 anthranilate phosphoribosyltransferase YP_130672.2 2881694 D 298386 CDS YP_130673.1 54309653 3124947 2882707..2884077 1 NC_006370.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 2884077 3124947 PBPRA2489 Photobacterium profundum SS9 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase YP_130673.1 2882707 D 298386 CDS YP_130674.1 54309654 3125369 2884093..2885283 1 NC_006370.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 2885283 3125369 PBPRA2490 Photobacterium profundum SS9 tryptophan synthase subunit beta YP_130674.1 2884093 D 298386 CDS YP_130675.1 54309655 3125234 2885283..2886092 1 NC_006370.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 2886092 trpA 3125234 trpA Photobacterium profundum SS9 tryptophan synthase subunit alpha YP_130675.1 2885283 D 298386 CDS YP_130676.1 54309656 3122595 2886462..2887682 1 NC_006370.1 proton/glutamate symporter 2887682 3122595 PBPRA2492 Photobacterium profundum SS9 proton/glutamate symporter YP_130676.1 2886462 D 298386 CDS YP_130677.1 54309657 3125183 2888362..2889246 1 NC_006370.1 hypothetical protein 2889246 3125183 PBPRA2493 Photobacterium profundum SS9 hypothetical protein YP_130677.1 2888362 D 298386 CDS YP_130678.1 54309658 3122103 2889826..2890263 1 NC_006370.1 hypothetical protein 2890263 3122103 PBPRA2494 Photobacterium profundum SS9 hypothetical protein YP_130678.1 2889826 D 298386 CDS YP_130679.1 54309659 3122105 2890273..2891127 1 NC_006370.1 hypothetical protein 2891127 3122105 PBPRA2495 Photobacterium profundum SS9 hypothetical protein YP_130679.1 2890273 D 298386 CDS YP_130680.1 54309660 3122280 2891127..2892512 1 NC_006370.1 Flp pilus assembly protein 2892512 3122280 PBPRA2496 Photobacterium profundum SS9 Flp pilus assembly protein YP_130680.1 2891127 D 298386 CDS YP_130681.1 54309661 3122605 2892509..2893003 1 NC_006370.1 hypothetical protein 2893003 3122605 PBPRA2497 Photobacterium profundum SS9 hypothetical protein YP_130681.1 2892509 D 298386 CDS YP_130682.1 54309662 3125403 2893017..2894282 1 NC_006370.1 hypothetical protein 2894282 3125403 PBPRA2498 Photobacterium profundum SS9 hypothetical protein YP_130682.1 2893017 D 298386 CDS YP_130683.1 54309663 3122613 2894279..2895553 1 NC_006370.1 Flp pilus assembly protein 2895553 3122613 PBPRA2499 Photobacterium profundum SS9 Flp pilus assembly protein YP_130683.1 2894279 D 298386 CDS YP_130684.1 54309664 3122582 2895550..2896458 1 NC_006370.1 Flp pilus assembly protein TadB 2896458 3122582 PBPRA2500 Photobacterium profundum SS9 Flp pilus assembly protein TadB YP_130684.1 2895550 D 298386 CDS YP_130685.1 54309665 3122405 2896458..2897309 1 NC_006370.1 Flp pilus assembly protein TadC 2897309 3122405 PBPRA2501 Photobacterium profundum SS9 Flp pilus assembly protein TadC YP_130685.1 2896458 D 298386 CDS YP_130686.1 54309666 3122577 2897306..2898067 1 NC_006370.1 hypothetical protein 2898067 3122577 PBPRA2502 Photobacterium profundum SS9 hypothetical protein YP_130686.1 2897306 D 298386 CDS YP_130687.1 54309667 3122379 2898517..2899074 1 NC_006370.1 hypothetical protein 2899074 3122379 PBPRA2503 Photobacterium profundum SS9 hypothetical protein YP_130687.1 2898517 D 298386 CDS YP_130688.1 54309668 3122418 2899121..2900605 1 NC_006370.1 hypothetical protein 2900605 3122418 PBPRA2504 Photobacterium profundum SS9 hypothetical protein YP_130688.1 2899121 D 298386 CDS YP_130689.1 54309669 3122471 2900611..2901273 1 NC_006370.1 hypothetical protein 2901273 3122471 PBPRA2505 Photobacterium profundum SS9 hypothetical protein YP_130689.1 2900611 D 298386 CDS YP_130690.1 54309670 3122761 2901467..2902006 1 NC_006370.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 2902006 3122761 PBPRA2506 Photobacterium profundum SS9 intracellular septation protein A YP_130690.1 2901467 D 298386 CDS YP_130691.1 54309671 3122750 2902029..2902427 1 NC_006370.1 acyl-CoA hydrolase 2902427 3122750 PBPRA2507 Photobacterium profundum SS9 acyl-CoA hydrolase YP_130691.1 2902029 D 298386 CDS YP_130692.1 54309672 3122797 2902588..2902887 1 NC_006370.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; hypothetical protein 2902887 3122797 PBPRA2508 Photobacterium profundum SS9 hypothetical protein YP_130692.1 2902588 D 298386 CDS YP_130693.1 54309673 3122491 2902887..2903273 1 NC_006370.1 hypothetical protein 2903273 3122491 PBPRA2509 Photobacterium profundum SS9 hypothetical protein YP_130693.1 2902887 D 298386 CDS YP_130694.1 54309674 3122873 complement(2903379..2904317) 1 NC_006370.1 hypothetical protein 2904317 3122873 PBPRA2510 Photobacterium profundum SS9 hypothetical protein YP_130694.1 2903379 R 298386 CDS YP_130695.1 54309675 3122806 complement(2904623..2905363) 1 NC_006370.1 pseudouridine synthase Rlu family protein 2905363 3122806 PBPRA2511 Photobacterium profundum SS9 pseudouridine synthase Rlu family protein YP_130695.1 2904623 R 298386 CDS YP_130696.1 54309676 3122646 complement(2905462..2906796) 1 NC_006370.1 sodium-dependent transporter 2906796 3122646 PBPRA2512 Photobacterium profundum SS9 sodium-dependent transporter YP_130696.1 2905462 R 298386 CDS YP_130697.1 54309677 3122927 2907239..2908696 1 NC_006370.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 2908696 cls 3122927 cls Photobacterium profundum SS9 cardiolipin synthetase YP_130697.1 2907239 D 298386 CDS YP_130698.1 54309678 3122476 2908893..2909384 1 NC_006370.1 hypothetical protein 2909384 3122476 PBPRA2514 Photobacterium profundum SS9 hypothetical protein YP_130698.1 2908893 D 298386 CDS YP_130699.1 54309679 3123077 2909386..2910552 1 NC_006370.1 GGDEF family protein 2910552 3123077 PBPRA2515 Photobacterium profundum SS9 GGDEF family protein YP_130699.1 2909386 D 298386 CDS YP_130700.1 54309680 3123166 complement(2910693..2912270) 1 NC_006370.1 BCCT family transporter 2912270 3123166 PBPRA2516 Photobacterium profundum SS9 BCCT family transporter YP_130700.1 2910693 R 298386 CDS YP_130701.1 54309681 3123356 complement(2912796..2913515) 1 NC_006370.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 2913515 3123356 PBPRA2517 Photobacterium profundum SS9 DNA polymerase III subunit epsilon YP_130701.1 2912796 R 298386 CDS YP_130702.1 54309682 3122929 complement(2913520..2915409) 1 NC_006370.1 hypothetical protein 2915409 3122929 PBPRA2518 Photobacterium profundum SS9 hypothetical protein YP_130702.1 2913520 R 298386 CDS YP_130703.1 54309683 3123370 complement(2915665..2916813) 1 NC_006370.1 alcohol dehydrogenase 2916813 3123370 PBPRA2519 Photobacterium profundum SS9 alcohol dehydrogenase YP_130703.1 2915665 R 298386 CDS YP_130704.1 54309684 3123253 complement(2917214..2919109) 1 NC_006370.1 hypothetical protein 2919109 3123253 PBPRA2520 Photobacterium profundum SS9 hypothetical protein YP_130704.1 2917214 R 298386 CDS YP_130705.1 54309685 3122922 complement(2919233..2920708) 1 NC_006370.1 nitrate transporter 2920708 3122922 PBPRA2521 Photobacterium profundum SS9 nitrate transporter YP_130705.1 2919233 R 298386 CDS YP_130706.1 54309686 3123091 complement(2920995..2921327) 1 NC_006370.1 nitrite reductase NADPH 2921327 3123091 PBPRA2522 Photobacterium profundum SS9 nitrite reductase NADPH YP_130706.1 2920995 R 298386 CDS YP_130707.1 54309687 3123527 complement(2921405..2923939) 1 NC_006370.1 NAD(P)H-nitrite reductase, large subunit 2923939 3123527 PBPRA2523 Photobacterium profundum SS9 NAD(P)H-nitrite reductase, large subunit YP_130707.1 2921405 R 298386 CDS YP_130708.1 54309688 3123907 complement(2923988..2924824) 1 NC_006370.1 uroporphyrin-III C-methyltransferase 2924824 3123907 PBPRA2524 Photobacterium profundum SS9 uroporphyrin-III C-methyltransferase YP_130708.1 2923988 R 298386 CDS YP_130709.1 54309689 3123931 2925276..2927972 1 NC_006370.1 nitrate reductase large subunit 2927972 3123931 PBPRA2525 Photobacterium profundum SS9 nitrate reductase large subunit YP_130709.1 2925276 D 298386 CDS YP_130710.1 54309690 3123827 complement(2927950..2928885) 1 NC_006370.1 hypothetical protein 2928885 3123827 PBPRA2526 Photobacterium profundum SS9 hypothetical protein YP_130710.1 2927950 R 298386 CDS YP_130711.1 54309691 3123676 complement(2928904..2930229) 1 NC_006370.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 2930229 3123676 PBPRA2527 Photobacterium profundum SS9 trans-2-enoyl-CoA reductase YP_130711.1 2928904 R 298386 CDS YP_130712.1 54309692 3123699 complement(2930721..2931191) 1 NC_006370.1 hypothetical protein 2931191 3123699 PBPRA2528 Photobacterium profundum SS9 hypothetical protein YP_130712.1 2930721 R 298386 CDS YP_130713.1 54309693 3124510 2932284..2935592 1 NC_006370.1 hypothetical protein 2935592 3124510 PBPRA2531 Photobacterium profundum SS9 hypothetical protein YP_130713.1 2932284 D 298386 CDS YP_130714.1 54309694 3124359 2936464..2937930 1 NC_006370.1 tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; tryptophanase 2937930 tnaA 3124359 tnaA Photobacterium profundum SS9 tryptophanase YP_130714.1 2936464 D 298386 CDS YP_130715.1 54309695 3124347 2938147..2939295 1 NC_006370.1 tryptophan-specific transport protein 2939295 3124347 PBPRA2533 Photobacterium profundum SS9 tryptophan-specific transport protein YP_130715.1 2938147 D 298386 CDS YP_130716.1 54309696 3123528 2939744..2940619 1 NC_006370.1 pyridoxine kinase 2940619 3123528 PBPRA2534 Photobacterium profundum SS9 pyridoxine kinase YP_130716.1 2939744 D 298386 CDS YP_130717.1 54309697 3124326 complement(2940719..2941198) 1 NC_006370.1 inner membrane protein 2941198 3124326 PBPRA2535 Photobacterium profundum SS9 inner membrane protein YP_130717.1 2940719 R 298386 CDS YP_130718.1 54309698 3124255 2942079..2943611 1 NC_006370.1 forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase 2943611 dgt 3124255 dgt Photobacterium profundum SS9 deoxyguanosinetriphosphate triphosphohydrolase YP_130718.1 2942079 D 298386 CDS YP_130719.1 54309699 3124429 complement(2943937..2944632) 1 NC_006370.1 hypothetical protein 2944632 3124429 PBPRA2537 Photobacterium profundum SS9 hypothetical protein YP_130719.1 2943937 R 298386 CDS YP_130720.1 54309700 3124265 complement(2944647..2945846) 1 NC_006370.1 hypothetical protein 2945846 3124265 PBPRA2538 Photobacterium profundum SS9 hypothetical protein YP_130720.1 2944647 R 298386 CDS YP_130721.1 54309701 3124319 complement(2946083..2946577) 1 NC_006370.1 hypothetical protein 2946577 3124319 PBPRA2539 Photobacterium profundum SS9 hypothetical protein YP_130721.1 2946083 R 298386 CDS YP_130722.1 54309702 3124569 complement(2946646..2948055) 1 NC_006370.1 hypothetical protein 2948055 3124569 PBPRA2540 Photobacterium profundum SS9 hypothetical protein YP_130722.1 2946646 R 298386 CDS YP_130723.1 54309703 3124662 complement(2948048..2950987) 1 NC_006370.1 hypothetical protein 2950987 3124662 PBPRA2541 Photobacterium profundum SS9 hypothetical protein YP_130723.1 2948048 R 298386 CDS YP_130724.1 54309704 3124452 complement(2950991..2951770) 1 NC_006370.1 hypothetical protein 2951770 3124452 PBPRA2542 Photobacterium profundum SS9 hypothetical protein YP_130724.1 2950991 R 298386 CDS YP_130725.1 54309705 3124226 2951984..2952838 1 NC_006370.1 hypothetical protein 2952838 3124226 PBPRA2543 Photobacterium profundum SS9 hypothetical protein YP_130725.1 2951984 D 298386 CDS YP_130726.1 54309706 3124724 2953470..2954051 1 NC_006370.1 hypothetical protein 2954051 3124724 PBPRA2545 Photobacterium profundum SS9 hypothetical protein YP_130726.1 2953470 D 298386 CDS YP_130727.1 54309707 3124694 complement(2954193..2955050) 1 NC_006370.1 Na(+)-dependent transporter 2955050 3124694 PBPRA2546 Photobacterium profundum SS9 Na(+)-dependent transporter YP_130727.1 2954193 R 298386 CDS YP_130728.1 54309708 3124568 complement(2955180..2956241) 1 NC_006370.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 2956241 3124568 PBPRA2547 Photobacterium profundum SS9 quinolinate synthetase YP_130728.1 2955180 R 298386 CDS YP_130729.1 54309709 3124659 complement(2956387..2957136) 1 NC_006370.1 hypothetical protein 2957136 3124659 PBPRA2548 Photobacterium profundum SS9 hypothetical protein YP_130729.1 2956387 R 298386 CDS YP_130730.1 54309710 3124441 complement(2957155..2957679) 1 NC_006370.1 peptidoglycan-associated lipoprotein 2957679 3124441 PBPRA2549 Photobacterium profundum SS9 peptidoglycan-associated lipoprotein YP_130730.1 2957155 R 298386 CDS YP_130731.1 54309711 3124371 complement(2957716..2959065) 1 NC_006370.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 2959065 tolB 3124371 tolB Photobacterium profundum SS9 translocation protein TolB YP_130731.1 2957716 R 298386 CDS YP_130732.1 54309712 3124375 complement(2959077..2960120) 1 NC_006370.1 hypothetical protein 2960120 3124375 PBPRA2551 Photobacterium profundum SS9 hypothetical protein YP_130732.1 2959077 R 298386 CDS YP_130733.1 54309713 3124428 complement(2960133..2960576) 1 NC_006370.1 tolR membrane protein 2960576 3124428 PBPRA2552 Photobacterium profundum SS9 tolR membrane protein YP_130733.1 2960133 R 298386 CDS YP_130734.1 54309714 3124426 complement(2960583..2961269) 1 NC_006370.1 TolQ protein 2961269 3124426 PBPRA2553 Photobacterium profundum SS9 TolQ protein YP_130734.1 2960583 R 298386 CDS YP_130735.1 54309715 3124536 complement(2961266..2961673) 1 NC_006370.1 hypothetical protein 2961673 3124536 PBPRA2554 Photobacterium profundum SS9 hypothetical protein YP_130735.1 2961266 R 298386 CDS YP_130736.1 54309716 3124542 complement(2961923..2962228) 1 NC_006370.1 hypothetical protein 2962228 3124542 PBPRA2555 Photobacterium profundum SS9 hypothetical protein YP_130736.1 2961923 R 298386 CDS YP_130737.1 54309717 3124567 complement(2962221..2962328) 1 NC_006370.1 hypothetical protein 2962328 3124567 PBPRA2556 Photobacterium profundum SS9 hypothetical protein YP_130737.1 2962221 R 298386 CDS YP_130738.1 54309718 3124572 complement(2962340..2963476) 1 NC_006370.1 cytochrome d ubiquinol oxidase, subunit II 2963476 3124572 PBPRA2557 Photobacterium profundum SS9 cytochrome d ubiquinol oxidase, subunit II YP_130738.1 2962340 R 298386 CDS YP_130739.1 54309719 3124753 complement(2963494..2965080) 1 NC_006370.1 cytochrome d ubiquinol oxidase, subunit I 2965080 3124753 PBPRA2558 Photobacterium profundum SS9 cytochrome d ubiquinol oxidase, subunit I YP_130739.1 2963494 R 298386 CDS YP_130740.1 54309720 3124014 complement(2966245..2966982) 1 NC_006370.1 alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E 2966982 3124014 PBPRA2559 Photobacterium profundum SS9 peptidase E YP_130740.1 2966245 R 298386 CDS YP_130741.1 54309721 3124134 2967355..2967936 1 NC_006370.1 Na(+)-translocating NADH-quinone reductase subunit E 2967936 3124134 PBPRA2560 Photobacterium profundum SS9 Na(+)-translocating NADH-quinone reductase subunit E YP_130741.1 2967355 D 298386 CDS YP_130742.1 54309722 3124543 2967937..2968515 1 NC_006370.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 2968515 3124543 PBPRA2561 Photobacterium profundum SS9 electron transport complex protein RnfB YP_130742.1 2967937 D 298386 CDS YP_130743.1 54309723 3124293 2968518..2970803 1 NC_006370.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 2970803 3124293 PBPRA2562 Photobacterium profundum SS9 electron transport complex protein RnfC YP_130743.1 2968518 D 298386 CDS YP_130744.1 54309724 3124352 2970807..2971856 1 NC_006370.1 RnfD-related protein 2971856 3124352 PBPRA2563 Photobacterium profundum SS9 RnfD-related protein YP_130744.1 2970807 D 298386 CDS YP_130745.1 54309725 3124353 2971869..2972504 1 NC_006370.1 part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG 2972504 3124353 PBPRA2564 Photobacterium profundum SS9 electron transport complex protein RnfG YP_130745.1 2971869 D 298386 CDS YP_130746.1 54309726 3123619 2972501..2973202 1 NC_006370.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex RsxE subunit 2973202 3123619 PBPRA2565 Photobacterium profundum SS9 electron transport complex RsxE subunit YP_130746.1 2972501 D 298386 CDS YP_130747.1 54309727 3123899 2973340..2973981 1 NC_006370.1 endonuclease III 2973981 3123899 PBPRA2566 Photobacterium profundum SS9 endonuclease III YP_130747.1 2973340 D 298386 CDS YP_130748.1 54309728 3123557 2974043..2974408 1 NC_006370.1 lactoylglutathione lyase 2974408 3123557 PBPRA2567 Photobacterium profundum SS9 lactoylglutathione lyase YP_130748.1 2974043 D 298386 CDS YP_130749.1 54309729 3123943 complement(2974458..2974796) 1 NC_006370.1 hypothetical protein 2974796 3123943 PBPRA2568 Photobacterium profundum SS9 hypothetical protein YP_130749.1 2974458 R 298386 CDS YP_130750.1 54309730 3123946 2974959..2975570 1 NC_006370.1 manganese superoxide dismutase 2975570 3123946 PBPRA2569 Photobacterium profundum SS9 manganese superoxide dismutase YP_130750.1 2974959 D 298386 CDS YP_130751.1 54309731 3123965 2975697..2976140 1 NC_006370.1 hypothetical protein 2976140 3123965 PBPRA2570 Photobacterium profundum SS9 hypothetical protein YP_130751.1 2975697 D 298386 CDS YP_130752.1 54309732 3123551 complement(2976253..2977143) 1 NC_006370.1 sodium-type flagellar protein MotY 2977143 3123551 PBPRA2571 Photobacterium profundum SS9 sodium-type flagellar protein MotY YP_130752.1 2976253 R 298386 CDS YP_130753.1 54309733 3123930 2977313..2977984 1 NC_006370.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 2977984 3123930 PBPRA2572 Photobacterium profundum SS9 ribonuclease T YP_130753.1 2977313 D 298386 CDS YP_130754.1 54309734 3123668 2978419..2979666 1 NC_006370.1 long-chain fatty acid transport protein 2979666 3123668 PBPRA2573 Photobacterium profundum SS9 long-chain fatty acid transport protein YP_130754.1 2978419 D 298386 CDS YP_130755.1 54309735 3123663 2979720..2982104 1 NC_006370.1 lipase 2982104 3123663 PBPRA2574 Photobacterium profundum SS9 lipase YP_130755.1 2979720 D 298386 CDS YP_130756.1 54309736 3123759 complement(2982200..2982817) 1 NC_006370.1 Ahp/CTSA family anti-oxidant protein 2982817 3123759 PBPRA2575 Photobacterium profundum SS9 Ahp/CTSA family anti-oxidant protein YP_130756.1 2982200 R 298386 CDS YP_130757.1 54309737 3123706 2983111..2984433 1 NC_006370.1 permease 2984433 3123706 PBPRA2576 Photobacterium profundum SS9 permease YP_130757.1 2983111 D 298386 CDS YP_130758.1 54309738 3123658 complement(2984729..2985070) 1 NC_006370.1 glutaredoxin-related protein 2985070 3123658 PBPRA2577 Photobacterium profundum SS9 glutaredoxin-related protein YP_130758.1 2984729 R 298386 CDS YP_130759.1 54309739 3124276 2985330..2985914 1 NC_006370.1 superoxide dismutase 2985914 3124276 PBPRA2578 Photobacterium profundum SS9 superoxide dismutase YP_130759.1 2985330 D 298386 CDS YP_130760.1 54309740 3124879 complement(2986014..2987132) 1 NC_006370.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 2987132 3124879 PBPRA2579 Photobacterium profundum SS9 aspartate-semialdehyde dehydrogenase YP_130760.1 2986014 R 298386 CDS YP_130761.1 54309741 3122961 2987903..2989342 1 NC_006370.1 Na+/H+ antiporter 2989342 3122961 PBPRA2580 Photobacterium profundum SS9 Na+/H+ antiporter YP_130761.1 2987903 D 298386 CDS YP_130762.1 54309742 3122982 2989763..2990494 1 NC_006370.1 hypothetical protein 2990494 3122982 PBPRA2581 Photobacterium profundum SS9 hypothetical protein YP_130762.1 2989763 D 298386 CDS YP_130763.1 54309743 3123932 2990494..2990955 1 NC_006370.1 hypothetical protein 2990955 3123932 PBPRA2582 Photobacterium profundum SS9 hypothetical protein YP_130763.1 2990494 D 298386 CDS YP_130764.1 54309744 3123491 2991049..2992185 1 NC_006370.1 carboxypeptidase G2 2992185 3123491 PBPRA2583 Photobacterium profundum SS9 carboxypeptidase G2 YP_130764.1 2991049 D 298386 CDS YP_130765.1 54309745 3123396 complement(2992340..2992651) 1 NC_006370.1 hypothetical protein 2992651 3123396 PBPRA2584 Photobacterium profundum SS9 hypothetical protein YP_130765.1 2992340 R 298386 CDS YP_130766.1 54309746 3122466 complement(2993023..2994036) 1 NC_006370.1 nucleoid-associated protein NdpA 2994036 3122466 PBPRA2585 Photobacterium profundum SS9 nucleoid-associated protein NdpA YP_130766.1 2993023 R 298386 CDS YP_130767.1 54309747 3123650 2994126..2994338 1 NC_006370.1 hypothetical protein 2994338 3123650 PBPRA2586 Photobacterium profundum SS9 hypothetical protein YP_130767.1 2994126 D 298386 CDS YP_130768.1 54309748 3124124 2994392..2996251 1 NC_006370.1 alkaline phosphatase 2996251 3124124 PBPRA2587 Photobacterium profundum SS9 alkaline phosphatase YP_130768.1 2994392 D 298386 CDS YP_130769.1 54309749 3124136 complement(2996387..2996674) 1 NC_006370.1 hypothetical protein 2996674 3124136 PBPRA2588 Photobacterium profundum SS9 hypothetical protein YP_130769.1 2996387 R 298386 CDS YP_130770.1 54309750 3124029 2996929..2998551 1 NC_006370.1 hypothetical protein 2998551 3124029 PBPRA2589 Photobacterium profundum SS9 hypothetical protein YP_130770.1 2996929 D 298386 CDS YP_130771.1 54309751 3125200 complement(2998548..3000497) 1 NC_006370.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 3000497 3125200 PBPRA2590 Photobacterium profundum SS9 DNA topoisomerase III YP_130771.1 2998548 R 298386 CDS YP_130772.1 54309752 3124333 complement(3000706..3001800) 1 NC_006370.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 3001800 3124333 PBPRA2591 Photobacterium profundum SS9 tRNA 2-selenouridine synthase YP_130772.1 3000706 R 298386 CDS YP_130773.1 54309753 3123856 complement(3001794..3002834) 1 NC_006370.1 selenophosphate synthase 3002834 3123856 PBPRA2592 Photobacterium profundum SS9 selenophosphate synthase YP_130773.1 3001794 R 298386 CDS YP_130774.1 54309754 3123143 complement(3003080..3003646) 1 NC_006370.1 nitroreductase 3003646 3123143 PBPRA2593 Photobacterium profundum SS9 nitroreductase YP_130774.1 3003080 R 298386 CDS YP_130775.1 54309755 3123408 complement(3003754..3005769) 1 NC_006370.1 2,4-dienoyl-CoA reductase 3005769 3123408 PBPRA2594 Photobacterium profundum SS9 2,4-dienoyl-CoA reductase YP_130775.1 3003754 R 298386 CDS YP_130776.1 54309756 3124812 3005930..3007783 1 NC_006370.1 protease IV 3007783 3124812 PBPRA2595 Photobacterium profundum SS9 protease IV YP_130776.1 3005930 D 298386 CDS YP_130777.1 54309757 3122805 3007980..3008879 1 NC_006370.1 converts asparagine to aspartate and ammonia; cytoplasmic asparaginase I 3008879 ansA 3122805 ansA Photobacterium profundum SS9 cytoplasmic asparaginase I YP_130777.1 3007980 D 298386 CDS YP_130778.1 54309758 3124656 3008983..3009651 1 NC_006370.1 glutathione S-transferase 3009651 3124656 PBPRA2597 Photobacterium profundum SS9 glutathione S-transferase YP_130778.1 3008983 D 298386 CDS YP_130779.1 54309759 3122162 complement(3009661..3009966) 1 NC_006370.1 hypothetical protein 3009966 3122162 PBPRA2598 Photobacterium profundum SS9 hypothetical protein YP_130779.1 3009661 R 298386 CDS YP_130780.1 54309760 3125508 3010224..3011036 1 NC_006370.1 hypothetical protein 3011036 3125508 PBPRA2599 Photobacterium profundum SS9 hypothetical protein YP_130780.1 3010224 D 298386 CDS YP_130781.1 54309761 3124237 complement(3011120..3012328) 1 NC_006370.1 ISSod3 transposase 3012328 3124237 PBPRA2600 Photobacterium profundum SS9 ISSod3 transposase YP_130781.1 3011120 R 298386 CDS YP_130782.1 54309762 3123483 complement(3012933..3013361) 1 NC_006370.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 3013361 3123483 PBPRA2601 Photobacterium profundum SS9 methionine sulfoxide reductase B YP_130782.1 3012933 R 298386 CDS YP_130783.2 161936299 3124118 3013657..3014649 1 NC_006370.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 3014649 3124118 PBPRA2602 Photobacterium profundum SS9 glyceraldehyde-3-phosphate dehydrogenase YP_130783.2 3013657 D 298386 CDS YP_130784.1 54309764 3123217 3014991..3015866 1 NC_006370.1 hypothetical protein 3015866 3123217 PBPRA2603 Photobacterium profundum SS9 hypothetical protein YP_130784.1 3014991 D 298386 CDS YP_130785.1 54309765 3123758 complement(3015960..3016340) 1 NC_006370.1 hypothetical protein 3016340 3123758 PBPRA2604 Photobacterium profundum SS9 hypothetical protein YP_130785.1 3015960 R 298386 CDS YP_130786.1 54309766 3125475 3017003..3018877 1 NC_006370.1 Ser protein kinase 3018877 3125475 PBPRA2605 Photobacterium profundum SS9 Ser protein kinase YP_130786.1 3017003 D 298386 CDS YP_130787.1 54309767 3124357 3018927..3020198 1 NC_006370.1 hypothetical protein 3020198 3124357 PBPRA2606 Photobacterium profundum SS9 hypothetical protein YP_130787.1 3018927 D 298386 CDS YP_130788.1 54309768 3122347 3020261..3021799 1 NC_006370.1 SpoVR family protein 3021799 3122347 PBPRA2607 Photobacterium profundum SS9 SpoVR family protein YP_130788.1 3020261 D 298386 CDS YP_130789.1 54309769 3125535 complement(3021908..3022759) 1 NC_006370.1 Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 3022759 3125535 PBPRA2608 Photobacterium profundum SS9 fatty acid metabolism regulator YP_130789.1 3021908 R 298386 CDS YP_130790.1 54309770 3124681 3023200..3024792 1 NC_006370.1 involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 3024792 nhaB 3124681 nhaB Photobacterium profundum SS9 sodium/proton antiporter YP_130790.1 3023200 D 298386 CDS YP_130791.1 54309771 3125021 3024895..3025425 1 NC_006370.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 3025425 3125021 PBPRA2610 Photobacterium profundum SS9 disulfide bond formation protein B YP_130791.1 3024895 D 298386 CDS YP_130792.1 54309772 3122928 complement(3025565..3026200) 1 NC_006370.1 preprotein translocase SecA 3026200 3122928 PBPRA2611 Photobacterium profundum SS9 preprotein translocase SecA YP_130792.1 3025565 R 298386 CDS YP_130793.1 54309773 3125399 3026505..3027218 1 NC_006370.1 hypothetical protein 3027218 3125399 PBPRA2612 Photobacterium profundum SS9 hypothetical protein YP_130793.1 3026505 D 298386 CDS YP_130794.1 54309774 3125418 3027354..3028259 1 NC_006370.1 regulator protein 3028259 3125418 PBPRA2613 Photobacterium profundum SS9 regulator protein YP_130794.1 3027354 D 298386 CDS YP_130795.1 54309775 3125232 complement(3028385..3028828) 1 NC_006370.1 hypothetical protein 3028828 3125232 PBPRA2614 Photobacterium profundum SS9 hypothetical protein YP_130795.1 3028385 R 298386 CDS YP_130796.1 54309776 3125221 3029087..3029329 1 NC_006370.1 proteinase inhibitor 3029329 3125221 PBPRA2615 Photobacterium profundum SS9 proteinase inhibitor YP_130796.1 3029087 D 298386 CDS YP_130797.1 54309777 3125309 complement(3029361..3029606) 1 NC_006370.1 transcriptional regulator 3029606 3125309 PBPRA2616 Photobacterium profundum SS9 transcriptional regulator YP_130797.1 3029361 R 298386 CDS YP_130798.1 54309778 3125347 complement(3030252..3031121) 1 NC_006370.1 hypothetical protein 3031121 3125347 PBPRA2617 Photobacterium profundum SS9 hypothetical protein YP_130798.1 3030252 R 298386 CDS YP_130799.1 54309779 3125373 3031527..3031922 1 NC_006370.1 hypothetical protein 3031922 3125373 PBPRA2618 Photobacterium profundum SS9 hypothetical protein YP_130799.1 3031527 D 298386 CDS YP_130800.1 54309780 3125165 3032199..3032762 1 NC_006370.1 transcriptional regulator 3032762 3125165 PBPRA2619 Photobacterium profundum SS9 transcriptional regulator YP_130800.1 3032199 D 298386 CDS YP_130801.1 54309781 3124961 3032775..3034652 1 NC_006370.1 acyltransferase 3034652 3124961 PBPRA2620 Photobacterium profundum SS9 acyltransferase YP_130801.1 3032775 D 298386 CDS YP_130802.1 54309782 3124206 complement(3034720..3036156) 1 NC_006370.1 O-succinylbenzoic acid--CoA ligase 3036156 3124206 PBPRA2621 Photobacterium profundum SS9 O-succinylbenzoic acid--CoA ligase YP_130802.1 3034720 R 298386 CDS YP_130803.1 54309783 3125209 complement(3036144..3037163) 1 NC_006370.1 catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 3037163 3125209 PBPRA2622 Photobacterium profundum SS9 O-succinylbenzoate synthase YP_130803.1 3036144 R 298386 CDS YP_130804.1 54309784 3125208 complement(3037144..3037989) 1 NC_006370.1 catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; acyl-CoA thioester hydrolase 3037989 3125208 PBPRA2623 Photobacterium profundum SS9 acyl-CoA thioester hydrolase YP_130804.1 3037144 R 298386 CDS YP_130805.1 54309785 3124990 complement(3037958..3039688) 1 NC_006370.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 3039688 3124990 PBPRA2624 Photobacterium profundum SS9 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase YP_130805.1 3037958 R 298386 CDS YP_130806.1 54309786 3125026 complement(3039685..3041085) 1 NC_006370.1 synthesizes isochorismate acid from chorismate; menaquinone-specific isochorismate synthase 3041085 3125026 PBPRA2625 Photobacterium profundum SS9 menaquinone-specific isochorismate synthase YP_130806.1 3039685 R 298386 CDS YP_130807.1 54309787 3125061 3041896..3043110 1 NC_006370.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase 3043110 3125061 PBPRA2626 Photobacterium profundum SS9 aminotransferase YP_130807.1 3041896 D 298386 CDS YP_130808.1 54309788 3125103 3043368..3043952 1 NC_006370.1 hypothetical protein 3043952 3125103 PBPRA2627 Photobacterium profundum SS9 hypothetical protein YP_130808.1 3043368 D 298386 CDS YP_130809.1 54309789 3125085 3044009..3045319 1 NC_006370.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 3045319 3125085 PBPRA2628 Photobacterium profundum SS9 deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_130809.1 3044009 D 298386 CDS YP_130810.1 54309790 3124925 complement(3045409..3046062) 1 NC_006370.1 hypothetical protein 3046062 3124925 PBPRA2629 Photobacterium profundum SS9 hypothetical protein YP_130810.1 3045409 R 298386 CDS YP_130811.1 54309791 3124963 3046072..3046635 1 NC_006370.1 hypothetical protein 3046635 3124963 PBPRA2630 Photobacterium profundum SS9 hypothetical protein YP_130811.1 3046072 D 298386 CDS YP_130812.1 54309792 3125260 3046781..3047119 1 NC_006370.1 hypothetical protein 3047119 3125260 PBPRA2631 Photobacterium profundum SS9 hypothetical protein YP_130812.1 3046781 D 298386 CDS YP_130813.1 54309793 3124933 complement(3047769..3048053) 1 NC_006370.1 DNA uptake protein 3048053 3124933 PBPRA2632 Photobacterium profundum SS9 DNA uptake protein YP_130813.1 3047769 R 298386 CDS YP_130814.1 54309794 3125462 complement(3048244..3050115) 1 NC_006370.1 peptidyl-prolyl cis-trans isomerase D 3050115 3125462 PBPRA2633 Photobacterium profundum SS9 peptidyl-prolyl cis-trans isomerase D YP_130814.1 3048244 R 298386 CDS YP_130815.1 54309795 3125176 complement(3050386..3050697) 1 NC_006370.1 nucleoid DNA-binding protein 3050697 3125176 PBPRA2634 Photobacterium profundum SS9 nucleoid DNA-binding protein YP_130815.1 3050386 R 298386 CDS YP_130816.1 54309796 3124931 complement(3050899..3053271) 1 NC_006370.1 ATP-dependent protease LA 3053271 3124931 PBPRA2635 Photobacterium profundum SS9 ATP-dependent protease LA YP_130816.1 3050899 R 298386 CDS YP_130817.1 54309797 3125353 complement(3053409..3054689) 1 NC_006370.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 3054689 clpX 3125353 clpX Photobacterium profundum SS9 ATP-dependent protease ATP-binding subunit ClpX YP_130817.1 3053409 R 298386 CDS YP_130818.1 54309798 3125366 complement(3054805..3055428) 1 NC_006370.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 3055428 clpP 3125366 clpP Photobacterium profundum SS9 ATP-dependent Clp protease proteolytic subunit YP_130818.1 3054805 R 298386 CDS YP_130819.1 54309799 3122473 complement(3055534..3056850) 1 NC_006370.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 3056850 tig 3122473 tig Photobacterium profundum SS9 trigger factor YP_130819.1 3055534 R 298386 CDS YP_130820.1 54309800 3122487 3057057..3057323 1 NC_006370.1 hypothetical protein 3057323 3122487 PBPRA2639 Photobacterium profundum SS9 hypothetical protein YP_130820.1 3057057 D 298386 CDS YP_130821.1 54309801 3122764 3058130..3058987 1 NC_006370.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 3058987 3122764 PBPRA2641 Photobacterium profundum SS9 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_130821.1 3058130 D 298386 CDS YP_130822.1 54309802 3122676 complement(3059169..3060089) 1 NC_006370.1 glucose-1-phosphate uridylyltransferase 3060089 3122676 PBPRA2642 Photobacterium profundum SS9 glucose-1-phosphate uridylyltransferase YP_130822.1 3059169 R 298386 CDS YP_130823.1 54309803 3122610 complement(3060369..3060866) 1 NC_006370.1 transcriptional activator RfaH 3060866 rfaH 3122610 rfaH Photobacterium profundum SS9 transcriptional activator RfaH YP_130823.1 3060369 R 298386 CDS YP_130824.1 54309804 3122549 3061273..3062658 1 NC_006370.1 dipeptide/tripeptide permease 3062658 3122549 PBPRA2644 Photobacterium profundum SS9 dipeptide/tripeptide permease YP_130824.1 3061273 D 298386 CDS YP_130825.1 54309805 3123151 complement(3063042..3064091) 1 NC_006370.1 response regulator 3064091 3123151 PBPRA2645 Photobacterium profundum SS9 response regulator YP_130825.1 3063042 R 298386 CDS YP_130826.1 54309806 3123538 3064465..3065343 1 NC_006370.1 transcriptional regulator 3065343 3123538 PBPRA2646 Photobacterium profundum SS9 transcriptional regulator YP_130826.1 3064465 D 298386 CDS YP_130827.1 54309807 3123073 3065552..3066151 1 NC_006370.1 hypothetical protein 3066151 3123073 PBPRA2647 Photobacterium profundum SS9 hypothetical protein YP_130827.1 3065552 D 298386 CDS YP_130828.1 54309808 3122691 complement(3066259..3067776) 1 NC_006370.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 3067776 3122691 PBPRA2648 Photobacterium profundum SS9 amidophosphoribosyltransferase YP_130828.1 3066259 R 298386 CDS YP_130829.1 54309809 3122553 complement(3067870..3068364) 1 NC_006370.1 bacteriocin production protein 3068364 3122553 PBPRA2649 Photobacterium profundum SS9 bacteriocin production protein YP_130829.1 3067870 R 298386 CDS YP_130830.1 54309810 3123269 complement(3068426..3069013) 1 NC_006370.1 DedD protein 3069013 3123269 PBPRA2650 Photobacterium profundum SS9 DedD protein YP_130830.1 3068426 R 298386 CDS YP_130831.1 54309811 3123282 complement(3069091..3070371) 1 NC_006370.1 folylpolyglutamate synthase/dihydrofolate synthase 3070371 3123282 PBPRA2651 Photobacterium profundum SS9 folylpolyglutamate synthase/dihydrofolate synthase YP_130831.1 3069091 R 298386 CDS YP_130832.1 54309812 3123691 complement(3070593..3071516) 1 NC_006370.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 3071516 3123691 PBPRA2652 Photobacterium profundum SS9 acetyl-CoA carboxylase subunit beta YP_130832.1 3070593 R 298386 CDS YP_130833.1 54309813 3123187 complement(3071659..3072444) 1 NC_006370.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 3072444 truA 3123187 truA Photobacterium profundum SS9 tRNA pseudouridine synthase A YP_130833.1 3071659 R 298386 CDS YP_130834.1 54309814 3123388 complement(3072634..3076860) 1 NC_006370.1 hypothetical protein 3076860 3123388 PBPRA2654 Photobacterium profundum SS9 hypothetical protein YP_130834.1 3072634 R 298386 CDS YP_130835.1 54309815 3123415 complement(3077357..3078370) 1 NC_006370.1 aspartate-semialdehyde dehydrogenase 3078370 3123415 PBPRA2655 Photobacterium profundum SS9 aspartate-semialdehyde dehydrogenase YP_130835.1 3077357 R 298386 CDS YP_130836.1 54309816 3123480 complement(3078367..3079542) 1 NC_006370.1 catalyzes the formation of 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate from erythronate-4-phosphate; erythronate-4-phosphate dehydrogenase 3079542 3123480 PBPRA2656 Photobacterium profundum SS9 erythronate-4-phosphate dehydrogenase YP_130836.1 3078367 R 298386 CDS YP_130837.1 54309817 3123416 complement(3079590..3080756) 1 NC_006370.1 UDP-glucose dehydrogenase 3080756 3123416 PBPRA2657 Photobacterium profundum SS9 UDP-glucose dehydrogenase YP_130837.1 3079590 R 298386 CDS YP_130838.1 54309818 3123560 complement(3081183..3082397) 1 NC_006370.1 3-oxoacyl- synthase I 3082397 3123560 PBPRA2658 Photobacterium profundum SS9 3-oxoacyl- synthase I YP_130838.1 3081183 R 298386 CDS YP_130839.1 54309819 3123497 3082671..3084764 1 NC_006370.1 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 3084764 mnmC 3123497 mnmC Photobacterium profundum SS9 5-methylaminomethyl-2-thiouridine methyltransferase YP_130839.1 3082671 D 298386 CDS YP_130840.1 54309820 3123671 complement(3084883..3085266) 1 NC_006370.1 hypothetical protein 3085266 3123671 PBPRA2660 Photobacterium profundum SS9 hypothetical protein YP_130840.1 3084883 R 298386 CDS YP_130841.1 54309821 3123651 complement(3085280..3086641) 1 NC_006370.1 hypothetical protein 3086641 3123651 PBPRA2661 Photobacterium profundum SS9 hypothetical protein YP_130841.1 3085280 R 298386 CDS YP_130842.1 54309822 3123596 3086958..3088523 1 NC_006370.1 hypothetical protein 3088523 3123596 PBPRA2662 Photobacterium profundum SS9 hypothetical protein YP_130842.1 3086958 D 298386 CDS YP_130843.1 54309823 3123595 3088767..3089834 1 NC_006370.1 hypothetical protein 3089834 3123595 PBPRA2663 Photobacterium profundum SS9 hypothetical protein YP_130843.1 3088767 D 298386 CDS YP_130844.1 54309824 3122061 complement(3089950..3090291) 1 NC_006370.1 undecaprenylphosphate N-acetylglucosamine 1-phosphate transferase 3090291 3122061 PBPRA2664 Photobacterium profundum SS9 undecaprenylphosphate N-acetylglucosamine 1-phosphate transferase YP_130844.1 3089950 R 298386 CDS YP_130845.1 54309825 3123574 complement(3090350..3091060) 1 NC_006370.1 undecaprenylphosphate N-acetylglucosamine 1-phosphate transferase 3091060 3123574 PBPRA2665 Photobacterium profundum SS9 undecaprenylphosphate N-acetylglucosamine 1-phosphate transferase YP_130845.1 3090350 R 298386 CDS YP_130846.1 54309826 3123533 complement(3091473..3091742) 1 NC_006370.1 hypothetical protein 3091742 3123533 PBPRA2666 Photobacterium profundum SS9 hypothetical protein YP_130846.1 3091473 R 298386 CDS YP_130847.1 54309827 3123794 complement(3091884..3095780) 1 NC_006370.1 hypothetical protein 3095780 3123794 PBPRA2667 Photobacterium profundum SS9 hypothetical protein YP_130847.1 3091884 R 298386 CDS YP_130848.1 54309828 3123788 complement(3095871..3097541) 1 NC_006370.1 hypothetical protein 3097541 3123788 PBPRA2668 Photobacterium profundum SS9 hypothetical protein YP_130848.1 3095871 R 298386 CDS YP_130849.1 54309829 3123660 3098002..3099237 1 NC_006370.1 hypothetical protein 3099237 3123660 PBPRA2669 Photobacterium profundum SS9 hypothetical protein YP_130849.1 3098002 D 298386 CDS YP_130850.1 54309830 3123979 3099191..3099664 1 NC_006370.1 hypothetical protein 3099664 3123979 PBPRA2670 Photobacterium profundum SS9 hypothetical protein YP_130850.1 3099191 D 298386 CDS YP_130851.1 54309831 3123860 3100310..3100564 1 NC_006370.1 cell growth regulatory protein mazE 3100564 3123860 PBPRA2671 Photobacterium profundum SS9 cell growth regulatory protein mazE YP_130851.1 3100310 D 298386 CDS YP_130852.1 54309832 3122049 3100564..3100917 1 NC_006370.1 MazF protein 3100917 3122049 PBPRA2672 Photobacterium profundum SS9 MazF protein YP_130852.1 3100564 D 298386 CDS YP_130853.1 54309833 3123895 complement(3101075..3102175) 1 NC_006370.1 hypothetical protein 3102175 3123895 PBPRA2673 Photobacterium profundum SS9 hypothetical protein YP_130853.1 3101075 R 298386 CDS YP_130854.1 54309834 3124104 complement(3102475..3103425) 1 NC_006370.1 UTP-glucose-1-phosphateuridylyltransferase, galU 3103425 3124104 PBPRA2674 Photobacterium profundum SS9 UTP-glucose-1-phosphateuridylyltransferase, galU YP_130854.1 3102475 R 298386 CDS YP_130855.1 54309835 3124055 complement(3103582..3104748) 1 NC_006370.1 nucleotide sugar dehydrogenase 3104748 3124055 PBPRA2675 Photobacterium profundum SS9 nucleotide sugar dehydrogenase YP_130855.1 3103582 R 298386 CDS YP_130856.1 54309836 3124010 complement(3104767..3105774) 1 NC_006370.1 nucleotide sugar epimerase 3105774 3124010 PBPRA2676 Photobacterium profundum SS9 nucleotide sugar epimerase YP_130856.1 3104767 R 298386 CDS YP_130857.1 54309837 3124150 complement(3105776..3106504) 1 NC_006370.1 hypotetical teichoic acid biosynthesis protein A 3106504 3124150 PBPRA2677 Photobacterium profundum SS9 hypotetical teichoic acid biosynthesis protein A YP_130857.1 3105776 R 298386 CDS YP_130858.1 54309838 3124101 complement(3106474..3107652) 1 NC_006370.1 hypothetical protein 3107652 3124101 PBPRA2678 Photobacterium profundum SS9 hypothetical protein YP_130858.1 3106474 R 298386 CDS YP_130859.1 54309839 3124128 complement(3107645..3108880) 1 NC_006370.1 hypothetical protein 3108880 3124128 PBPRA2679 Photobacterium profundum SS9 hypothetical protein YP_130859.1 3107645 R 298386 CDS YP_130860.1 54309840 3124229 complement(3108864..3110021) 1 NC_006370.1 glycosyltransferase 3110021 3124229 PBPRA2680 Photobacterium profundum SS9 glycosyltransferase YP_130860.1 3108864 R 298386 CDS YP_130861.1 54309841 3124209 complement(3110474..3111385) 1 NC_006370.1 glycosyl transferase 3111385 3124209 PBPRA2681 Photobacterium profundum SS9 glycosyl transferase YP_130861.1 3110474 R 298386 CDS YP_130862.1 54309842 3122800 complement(3111417..3112556) 1 NC_006370.1 hypothetical protein 3112556 3122800 PBPRA2682 Photobacterium profundum SS9 hypothetical protein YP_130862.1 3111417 R 298386 CDS YP_130863.1 54309843 3124184 complement(3112613..3113749) 1 NC_006370.1 hypothetical protein 3113749 3124184 PBPRA2683 Photobacterium profundum SS9 hypothetical protein YP_130863.1 3112613 R 298386 CDS YP_130864.1 54309844 3124308 complement(3113782..3115113) 1 NC_006370.1 hypothetical protein 3115113 3124308 PBPRA2684 Photobacterium profundum SS9 hypothetical protein YP_130864.1 3113782 R 298386 CDS YP_130865.1 54309845 3124286 complement(3115342..3115761) 1 NC_006370.1 glycerol-3-phosphatecytidyltransferase 3115761 3124286 PBPRA2685 Photobacterium profundum SS9 glycerol-3-phosphatecytidyltransferase YP_130865.1 3115342 R 298386 CDS YP_130866.1 54309846 3124531 complement(3115805..3117946) 1 NC_006370.1 tyrosine-protein kinase Wzc 3117946 3124531 PBPRA2686 Photobacterium profundum SS9 tyrosine-protein kinase Wzc YP_130866.1 3115805 R 298386 CDS YP_130867.1 54309847 3124513 complement(3118064..3118495) 1 NC_006370.1 protein-tyrosine-phosphatase 3118495 3124513 PBPRA2687 Photobacterium profundum SS9 protein-tyrosine-phosphatase YP_130867.1 3118064 R 298386 CDS YP_130868.1 54309848 3124450 complement(3118638..3119774) 1 NC_006370.1 capsular polysaccharide transport protein 3119774 3124450 PBPRA2688 Photobacterium profundum SS9 capsular polysaccharide transport protein YP_130868.1 3118638 R 298386 CDS YP_130869.1 54309849 3124424 complement(3120435..3120722) 1 NC_006370.1 hypothetical protein 3120722 3124424 PBPRA2689 Photobacterium profundum SS9 hypothetical protein YP_130869.1 3120435 R 298386 CDS YP_130870.1 54309850 3124400 3120884..3121579 1 NC_006370.1 lipoprotein 3121579 3124400 PBPRA2690 Photobacterium profundum SS9 lipoprotein YP_130870.1 3120884 D 298386 CDS YP_130871.1 54309851 3124260 3121592..3122473 1 NC_006370.1 polysaccharide synthesis-like protein 3122473 3124260 PBPRA2691 Photobacterium profundum SS9 polysaccharide synthesis-like protein YP_130871.1 3121592 D 298386 CDS YP_130872.1 54309852 3124099 3122473..3124671 1 NC_006370.1 hypothetical protein 3124671 3124099 PBPRA2692 Photobacterium profundum SS9 hypothetical protein YP_130872.1 3122473 D 298386 CDS YP_130873.1 54309853 3124468 3124965..3125261 1 NC_006370.1 hypothetical protein 3125261 3124468 PBPRA2693 Photobacterium profundum SS9 hypothetical protein YP_130873.1 3124965 D 298386 CDS YP_130874.1 54309854 3124815 complement(3125355..3125630) 1 NC_006370.1 hypothetical protein 3125630 3124815 PBPRA2694 Photobacterium profundum SS9 hypothetical protein YP_130874.1 3125355 R 298386 CDS YP_130875.1 54309855 3124695 complement(3125699..3125998) 1 NC_006370.1 transporting ATPase 3125998 3124695 PBPRA2695 Photobacterium profundum SS9 transporting ATPase YP_130875.1 3125699 R 298386 CDS YP_130876.1 54309856 3124676 complement(3125961..3126233) 1 NC_006370.1 transporting ATPase 3126233 3124676 PBPRA2696 Photobacterium profundum SS9 transporting ATPase YP_130876.1 3125961 R 298386 CDS YP_130877.1 54309857 3124495 complement(3126387..3126950) 1 NC_006370.1 galactosyl-transferase 3126950 3124495 PBPRA2697 Photobacterium profundum SS9 galactosyl-transferase YP_130877.1 3126387 R 298386 CDS YP_130878.1 54309858 3124712 3127191..3129095 1 NC_006370.1 mannosyl-transferase 3129095 3124712 PBPRA2698 Photobacterium profundum SS9 mannosyl-transferase YP_130878.1 3127191 D 298386 CDS YP_130879.1 54309859 3124716 complement(3129127..3130071) 1 NC_006370.1 nucleoside-diphosphate-sugar epimerase 3130071 3124716 PBPRA2699 Photobacterium profundum SS9 nucleoside-diphosphate-sugar epimerase YP_130879.1 3129127 R 298386 CDS YP_130880.1 54309860 3124484 3130127..3131026 1 NC_006370.1 hypothetical protein 3131026 3124484 PBPRA2700 Photobacterium profundum SS9 hypothetical protein YP_130880.1 3130127 D 298386 CDS YP_130881.1 54309861 3124506 complement(3132038..3133933) 1 NC_006370.1 hypothetical protein 3133933 3124506 PBPRA2701 Photobacterium profundum SS9 hypothetical protein YP_130881.1 3132038 R 298386 CDS YP_130882.1 54309862 3124644 complement(3133926..3134948) 1 NC_006370.1 hypothetical protein 3134948 3124644 PBPRA2702 Photobacterium profundum SS9 hypothetical protein YP_130882.1 3133926 R 298386 CDS YP_130883.1 54309863 3124594 complement(3135035..3135430) 1 NC_006370.1 glycerol-3-phosphate cytidyltransferase 3135430 3124594 PBPRA2703 Photobacterium profundum SS9 glycerol-3-phosphate cytidyltransferase YP_130883.1 3135035 R 298386 CDS YP_130884.1 54309864 3124390 complement(3135532..3135966) 1 NC_006370.1 transposase 3135966 3124390 PBPRA2704 Photobacterium profundum SS9 transposase YP_130884.1 3135532 R 298386 CDS YP_130885.1 54309865 3124472 complement(3136120..3138216) 1 NC_006370.1 hypothetical protein 3138216 3124472 PBPRA2705 Photobacterium profundum SS9 hypothetical protein YP_130885.1 3136120 R 298386 CDS YP_130886.1 54309866 3124306 complement(3138213..3139547) 1 NC_006370.1 hypothetical protein 3139547 3124306 PBPRA2706 Photobacterium profundum SS9 hypothetical protein YP_130886.1 3138213 R 298386 CDS YP_130887.1 54309867 3124378 complement(3139602..3140648) 1 NC_006370.1 polysaccharide biosynthesis protein, NeuB 3140648 3124378 PBPRA2707 Photobacterium profundum SS9 polysaccharide biosynthesis protein, NeuB YP_130887.1 3139602 R 298386 CDS YP_130888.1 54309868 3123375 complement(3140651..3142213) 1 NC_006370.1 hypothetical protein 3142213 3123375 PBPRA2708 Photobacterium profundum SS9 hypothetical protein YP_130888.1 3140651 R 298386 CDS YP_130889.1 54309869 3124182 complement(3142210..3142908) 1 NC_006370.1 NeuA 3142908 3124182 PBPRA2709 Photobacterium profundum SS9 NeuA YP_130889.1 3142210 R 298386 CDS YP_130890.1 54309870 3124198 complement(3142908..3144086) 1 NC_006370.1 FlmB 3144086 3124198 PBPRA2710 Photobacterium profundum SS9 FlmB YP_130890.1 3142908 R 298386 CDS YP_130891.1 54309871 3124253 complement(3144083..3145096) 1 NC_006370.1 polysaccharide biosynthesis protein 3145096 3124253 PBPRA2711 Photobacterium profundum SS9 polysaccharide biosynthesis protein YP_130891.1 3144083 R 298386 CDS YP_130892.1 54309872 3124087 complement(3145373..3146521) 1 NC_006370.1 teichoic acid biosynthesis protein F 3146521 3124087 PBPRA2712 Photobacterium profundum SS9 teichoic acid biosynthesis protein F YP_130892.1 3145373 R 298386 CDS YP_130893.1 54309873 3124112 3147232..3147822 1 NC_006370.1 hypothetical protein 3147822 3124112 PBPRA2713 Photobacterium profundum SS9 hypothetical protein YP_130893.1 3147232 D 298386 CDS YP_130894.1 54309874 3124131 complement(3147901..3148986) 1 NC_006370.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 3148986 3124131 PBPRA2714 Photobacterium profundum SS9 chorismate synthase YP_130894.1 3147901 R 298386 CDS YP_130895.1 54309875 3124023 complement(3149134..3151029) 1 NC_006370.1 PTS system, fructose-specific IIABC component 3151029 3124023 PBPRA2715 Photobacterium profundum SS9 PTS system, fructose-specific IIABC component YP_130895.1 3149134 R 298386 CDS YP_130896.1 54309876 3124053 complement(3151643..3152848) 1 NC_006370.1 mannose-6-phosphate isomer 3152848 3124053 PBPRA2716 Photobacterium profundum SS9 mannose-6-phosphate isomer YP_130896.1 3151643 R 298386 CDS YP_130897.1 54309877 3124042 3153254..3154099 1 NC_006370.1 transcriptional regulator 3154099 3124042 PBPRA2717 Photobacterium profundum SS9 transcriptional regulator YP_130897.1 3153254 D 298386 CDS YP_130898.1 54309878 3123883 complement(3154152..3154958) 1 NC_006370.1 hypothetical protein 3154958 3123883 PBPRA2718 Photobacterium profundum SS9 hypothetical protein YP_130898.1 3154152 R 298386 CDS YP_130899.1 54309879 3123873 complement(3154960..3155262) 1 NC_006370.1 phosphotransferase system fructose-specific component IIB 3155262 3123873 PBPRA2719 Photobacterium profundum SS9 phosphotransferase system fructose-specific component IIB YP_130899.1 3154960 R 298386 CDS YP_130900.1 54309880 3123981 complement(3155387..3156505) 1 NC_006370.1 16S rRNA uridine-516 pseudouridylate synthase 3156505 3123981 PBPRA2720 Photobacterium profundum SS9 16S rRNA uridine-516 pseudouridylate synthase YP_130900.1 3155387 R 298386 CDS YP_130901.1 54309881 3123985 complement(3156748..3159879) 1 NC_006370.1 multidrug resistance protein 3159879 3123985 PBPRA2721 Photobacterium profundum SS9 multidrug resistance protein YP_130901.1 3156748 R 298386 CDS YP_130902.1 54309882 3123956 complement(3159879..3161081) 1 NC_006370.1 HlyD family secretion protein 3161081 3123956 PBPRA2722 Photobacterium profundum SS9 HlyD family secretion protein YP_130902.1 3159879 R 298386 CDS YP_130903.1 54309883 3123115 3162340..3164088 1 NC_006370.1 hypothetical protein 3164088 3123115 PBPRA2729 Photobacterium profundum SS9 hypothetical protein YP_130903.1 3162340 D 298386 CDS YP_130904.1 54309884 3123267 complement(3164136..3165098) 1 NC_006370.1 glutathione S-transferase 3165098 3123267 PBPRA2730 Photobacterium profundum SS9 glutathione S-transferase YP_130904.1 3164136 R 298386 CDS YP_130905.1 54309885 3122842 complement(3165265..3166332) 1 NC_006370.1 hypothetical protein 3166332 3122842 PBPRA2731 Photobacterium profundum SS9 hypothetical protein YP_130905.1 3165265 R 298386 CDS YP_130906.1 54309886 3122989 complement(3166625..3167542) 1 NC_006370.1 transcriptional regulator 3167542 3122989 PBPRA2732 Photobacterium profundum SS9 transcriptional regulator YP_130906.1 3166625 R 298386 CDS YP_130907.1 54309887 3122988 3167918..3168877 1 NC_006370.1 hypothetical protein 3168877 3122988 PBPRA2733 Photobacterium profundum SS9 hypothetical protein YP_130907.1 3167918 D 298386 CDS YP_130908.1 54309888 3123004 complement(3169249..3170457) 1 NC_006370.1 ISSod3 transposase 3170457 3123004 PBPRA2734 Photobacterium profundum SS9 ISSod3 transposase YP_130908.1 3169249 R 298386 CDS YP_130909.2 161936298 3122756 complement(3170633..3172546) 1 NC_006370.1 choline-glycine betaine transporter 3172546 3122756 PBPRA2735 Photobacterium profundum SS9 choline-glycine betaine transporter YP_130909.2 3170633 R 298386 CDS YP_130910.1 54309890 3122502 3172990..3174573 1 NC_006370.1 Na+/H+ antiporter 3174573 3122502 PBPRA2736 Photobacterium profundum SS9 Na+/H+ antiporter YP_130910.1 3172990 D 298386 CDS YP_130911.1 54309891 3122557 3174764..3175570 1 NC_006370.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 3175570 3122557 PBPRA2737 Photobacterium profundum SS9 exonuclease III YP_130911.1 3174764 D 298386 CDS YP_130912.1 54309892 3122774 3175645..3176295 1 NC_006370.1 cofactor involved in the reduction of disulfides; glutaredoxin 2 3176295 3122774 PBPRA2738 Photobacterium profundum SS9 glutaredoxin 2 YP_130912.1 3175645 D 298386 CDS YP_130913.1 54309893 3122315 complement(3176399..3177076) 1 NC_006370.1 ABC-type arginine/histidine transport system, permease component 3177076 3122315 PBPRA2739 Photobacterium profundum SS9 ABC-type arginine/histidine transport system, permease component YP_130913.1 3176399 R 298386 CDS YP_130914.1 54309894 3122368 complement(3177080..3177820) 1 NC_006370.1 ABC-type arginine transport system, permease component 3177820 3122368 PBPRA2740 Photobacterium profundum SS9 ABC-type arginine transport system, permease component YP_130914.1 3177080 R 298386 CDS YP_130915.1 54309895 3122382 complement(3177904..3178722) 1 NC_006370.1 amino acid ABC transporter, periplasmic amino acid-binding protein 3178722 3122382 PBPRA2741 Photobacterium profundum SS9 amino acid ABC transporter, periplasmic amino acid-binding protein YP_130915.1 3177904 R 298386 CDS YP_130916.1 54309896 3122261 complement(3178809..3179603) 1 NC_006370.1 ABC-type histidine transport system, ATPase component 3179603 3122261 PBPRA2742 Photobacterium profundum SS9 ABC-type histidine transport system, ATPase component YP_130916.1 3178809 R 298386 CDS YP_130917.1 54309897 3122211 3180478..3182205 1 NC_006370.1 peptide ABC transporter substrate-binding protein 3182205 3122211 PBPRA2743 Photobacterium profundum SS9 peptide ABC transporter substrate-binding protein YP_130917.1 3180478 D 298386 CDS YP_130918.1 54309898 3122189 complement(3182237..3182530) 1 NC_006370.1 ArsR family transcriptional regulator 3182530 3122189 PBPRA2744 Photobacterium profundum SS9 ArsR family transcriptional regulator YP_130918.1 3182237 R 298386 CDS YP_130919.1 54309899 3122109 complement(3182698..3184179) 1 NC_006370.1 hypothetical protein 3184179 3122109 PBPRA2745 Photobacterium profundum SS9 hypothetical protein YP_130919.1 3182698 R 298386 CDS YP_130920.1 54309900 3122163 complement(3184176..3185543) 1 NC_006370.1 hypothetical protein 3185543 3122163 PBPRA2746 Photobacterium profundum SS9 hypothetical protein YP_130920.1 3184176 R 298386 CDS YP_130921.1 54309901 3122148 complement(3185716..3186015) 1 NC_006370.1 hypothetical protein 3186015 3122148 PBPRA2747 Photobacterium profundum SS9 hypothetical protein YP_130921.1 3185716 R 298386 CDS YP_130922.1 54309902 3121957 3186014..3187750 1 NC_006370.1 hypothetical protein 3187750 3121957 PBPRA2748 Photobacterium profundum SS9 hypothetical protein YP_130922.1 3186014 D 298386 CDS YP_130923.1 54309903 3121981 3188218..3189732 1 NC_006370.1 hypothetical protein 3189732 3121981 PBPRA2749 Photobacterium profundum SS9 hypothetical protein YP_130923.1 3188218 D 298386 CDS YP_130924.1 54309904 3122029 3189946..3192222 1 NC_006370.1 formate acetyltransferase 3192222 3122029 PBPRA2750 Photobacterium profundum SS9 formate acetyltransferase YP_130924.1 3189946 D 298386 CDS YP_130925.1 54309905 3122291 3192467..3193120 1 NC_006370.1 hypothetical protein 3193120 3122291 PBPRA2751 Photobacterium profundum SS9 hypothetical protein YP_130925.1 3192467 D 298386 CDS YP_130926.1 54309906 3124763 3193370..3194110 1 NC_006370.1 activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 3194110 pflA 3124763 pflA Photobacterium profundum SS9 pyruvate formate lyase-activating enzyme 1 YP_130926.1 3193370 D 298386 CDS YP_130927.1 54309907 3122485 complement(3194260..3195198) 1 NC_006370.1 hypothetical protein 3195198 3122485 PBPRA2753 Photobacterium profundum SS9 hypothetical protein YP_130927.1 3194260 R 298386 CDS YP_130928.1 54309908 3124820 3195570..3196562 1 NC_006370.1 tricarboxylic transport TctC 3196562 3124820 PBPRA2754 Photobacterium profundum SS9 tricarboxylic transport TctC YP_130928.1 3195570 D 298386 CDS YP_130929.1 54309909 3124831 3196675..3197184 1 NC_006370.1 tricarboxylic transport TctB 3197184 3124831 PBPRA2755 Photobacterium profundum SS9 tricarboxylic transport TctB YP_130929.1 3196675 D 298386 CDS YP_130930.1 54309910 3124769 3197195..3198127 1 NC_006370.1 tricarboxylic transport TctA 3198127 3124769 PBPRA2756 Photobacterium profundum SS9 tricarboxylic transport TctA YP_130930.1 3197195 D 298386 CDS YP_130931.1 54309911 3124787 3198174..3199454 1 NC_006370.1 hypothetical protein 3199454 3124787 PBPRA2757 Photobacterium profundum SS9 hypothetical protein YP_130931.1 3198174 D 298386 CDS YP_130932.1 54309912 3121953 3199438..3200136 1 NC_006370.1 hypothetical protein 3200136 3121953 PBPRA2758 Photobacterium profundum SS9 hypothetical protein YP_130932.1 3199438 D 298386 CDS YP_130933.1 54309913 3124762 complement(3200337..3201488) 1 NC_006370.1 iron-containing alcohol dehydrogenase 3201488 3124762 PBPRA2759 Photobacterium profundum SS9 iron-containing alcohol dehydrogenase YP_130933.1 3200337 R 298386 CDS YP_130934.1 54309914 3122011 complement(3201626..3202312) 1 NC_006370.1 ThiJ/PfpI family protein 3202312 3122011 PBPRA2760 Photobacterium profundum SS9 ThiJ/PfpI family protein YP_130934.1 3201626 R 298386 CDS YP_130935.1 54309915 3122697 3202497..3203396 1 NC_006370.1 transcriptional regulator 3203396 3122697 PBPRA2761 Photobacterium profundum SS9 transcriptional regulator YP_130935.1 3202497 D 298386 CDS YP_130936.1 54309916 3122085 complement(3203451..3204128) 1 NC_006370.1 response regulator ofcitrate/malate metabolism 3204128 3122085 PBPRA2762 Photobacterium profundum SS9 response regulator ofcitrate/malate metabolism YP_130936.1 3203451 R 298386 CDS YP_130937.1 54309917 3122071 complement(3204168..3205772) 1 NC_006370.1 citrate/malate metabolism signal transduction histidine kinase 3205772 3122071 PBPRA2763 Photobacterium profundum SS9 citrate/malate metabolism signal transduction histidine kinase YP_130937.1 3204168 R 298386 CDS YP_130938.1 54309918 3122167 3206048..3207802 1 NC_006370.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 3207802 3122167 PBPRA2764 Photobacterium profundum SS9 formate--tetrahydrofolate ligase YP_130938.1 3206048 D 298386 CDS YP_130939.1 54309919 3122164 complement(3208120..3209025) 1 NC_006370.1 LysR family transcriptional regulator 3209025 3122164 PBPRA2765 Photobacterium profundum SS9 LysR family transcriptional regulator YP_130939.1 3208120 R 298386 CDS YP_130940.1 54309920 3122281 3209246..3210724 1 NC_006370.1 formate transporter 1 3210724 3122281 PBPRA2766 Photobacterium profundum SS9 formate transporter 1 YP_130940.1 3209246 D 298386 CDS YP_130941.1 54309921 3122256 complement(3210859..3211512) 1 NC_006370.1 hypothetical protein 3211512 3122256 PBPRA2767 Photobacterium profundum SS9 hypothetical protein YP_130941.1 3210859 R 298386 CDS YP_130942.1 54309922 3122340 3211749..3212249 1 NC_006370.1 hypothetical protein 3212249 3122340 PBPRA2768 Photobacterium profundum SS9 hypothetical protein YP_130942.1 3211749 D 298386 CDS YP_130943.1 54309923 3122318 3212510..3213769 1 NC_006370.1 phosphoglycerate transport regulatory protein PgtC 3213769 3122318 PBPRA2769 Photobacterium profundum SS9 phosphoglycerate transport regulatory protein PgtC YP_130943.1 3212510 D 298386 CDS YP_130944.1 54309924 3122292 3213772..3216132 1 NC_006370.1 phosphoglycerate transport regulatory protein PgtB 3216132 3122292 PBPRA2770 Photobacterium profundum SS9 phosphoglycerate transport regulatory protein PgtB YP_130944.1 3213772 D 298386 CDS YP_130945.1 54309925 3122395 3216119..3217402 1 NC_006370.1 phosphoglycerate transport system transcription regulator 3217402 3122395 PBPRA2771 Photobacterium profundum SS9 phosphoglycerate transport system transcription regulator YP_130945.1 3216119 D 298386 CDS YP_130946.1 54309926 3122373 complement(3217704..3219005) 1 NC_006370.1 transporter permease 3219005 3122373 PBPRA2772 Photobacterium profundum SS9 transporter permease YP_130946.1 3217704 R 298386 CDS YP_130947.1 54309927 3122792 complement(3219015..3219374) 1 NC_006370.1 hypothetical protein 3219374 3122792 PBPRA2773 Photobacterium profundum SS9 hypothetical protein YP_130947.1 3219015 R 298386 CDS YP_130948.1 54309928 3122420 complement(3219391..3220266) 1 NC_006370.1 hydrolase 3220266 3122420 PBPRA2774 Photobacterium profundum SS9 hydrolase YP_130948.1 3219391 R 298386 CDS YP_130949.1 54309929 3122409 complement(3220531..3221427) 1 NC_006370.1 hypothetical protein 3221427 3122409 PBPRA2775 Photobacterium profundum SS9 hypothetical protein YP_130949.1 3220531 R 298386 CDS YP_130950.1 54309930 3122648 3221897..3222214 1 NC_006370.1 PTS system, cellobiose-specific iibcomponent 3222214 3122648 PBPRA2776 Photobacterium profundum SS9 PTS system, cellobiose-specific iibcomponent YP_130950.1 3221897 D 298386 CDS YP_130951.1 54309931 3122948 3222232..3223557 1 NC_006370.1 phosphotransferase systemcellobiose-specific component IIC 3223557 3122948 PBPRA2777 Photobacterium profundum SS9 phosphotransferase systemcellobiose-specific component IIC YP_130951.1 3222232 D 298386 CDS YP_130952.1 54309932 3122864 3223560..3223898 1 NC_006370.1 PTS system, cellobiose-specific iiacomponent 3223898 3122864 PBPRA2778 Photobacterium profundum SS9 PTS system, cellobiose-specific iiacomponent YP_130952.1 3223560 D 298386 CDS YP_130953.1 54309933 3122852 3223909..3224799 1 NC_006370.1 hypothetical protein 3224799 3122852 PBPRA2779 Photobacterium profundum SS9 hypothetical protein YP_130953.1 3223909 D 298386 CDS YP_130954.1 54309934 3123011 3225000..3225560 1 NC_006370.1 hypothetical protein 3225560 3123011 PBPRA2780 Photobacterium profundum SS9 hypothetical protein YP_130954.1 3225000 D 298386 CDS YP_130955.1 54309935 3122944 complement(3225858..3228044) 1 NC_006370.1 hypothetical protein 3228044 3122944 PBPRA2781 Photobacterium profundum SS9 hypothetical protein YP_130955.1 3225858 R 298386 CDS YP_130956.1 54309936 3123200 complement(3228209..3229435) 1 NC_006370.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; mutase 3229435 3123200 PBPRA2782 Photobacterium profundum SS9 mutase YP_130956.1 3228209 R 298386 CDS YP_130957.1 54309937 3123163 complement(3229428..3230609) 1 NC_006370.1 hypothetical protein 3230609 3123163 PBPRA2783 Photobacterium profundum SS9 hypothetical protein YP_130957.1 3229428 R 298386 CDS YP_130958.1 54309938 3123340 complement(3230684..3231985) 1 NC_006370.1 transport system permease protein 3231985 3123340 PBPRA2784 Photobacterium profundum SS9 transport system permease protein YP_130958.1 3230684 R 298386 CDS YP_130959.1 54309939 3123323 complement(3231995..3232354) 1 NC_006370.1 protein yhfU 3232354 3123323 PBPRA2785 Photobacterium profundum SS9 protein yhfU YP_130959.1 3231995 R 298386 CDS YP_130960.1 54309940 3123226 complement(3232371..3233246) 1 NC_006370.1 hydrolase 3233246 3123226 PBPRA2786 Photobacterium profundum SS9 hydrolase YP_130960.1 3232371 R 298386 CDS YP_130961.1 54309941 3123542 complement(3233271..3233591) 1 NC_006370.1 hypothetical protein 3233591 3123542 PBPRA2787 Photobacterium profundum SS9 hypothetical protein YP_130961.1 3233271 R 298386 CDS YP_130962.1 54309942 3123489 complement(3233647..3234543) 1 NC_006370.1 hypothetical protein 3234543 3123489 PBPRA2788 Photobacterium profundum SS9 hypothetical protein YP_130962.1 3233647 R 298386 CDS YP_130963.1 54309943 3123493 complement(3234838..3235476) 1 NC_006370.1 hypothetical protein 3235476 3123493 PBPRA2789 Photobacterium profundum SS9 hypothetical protein YP_130963.1 3234838 R 298386 CDS YP_130964.1 54309944 3123592 complement(3235563..3236591) 1 NC_006370.1 outer membrane protein 3236591 3123592 PBPRA2790 Photobacterium profundum SS9 outer membrane protein YP_130964.1 3235563 R 298386 CDS YP_130965.2 161936297 3123608 3237057..3237872 1 NC_006370.1 methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase 3237872 rrmA 3123608 rrmA Photobacterium profundum SS9 23S rRNA methyltransferase YP_130965.2 3237057 D 298386 CDS YP_130966.1 54309946 3123553 3238087..3239052 1 NC_006370.1 hypothetical protein 3239052 3123553 PBPRA2792 Photobacterium profundum SS9 hypothetical protein YP_130966.1 3238087 D 298386 CDS YP_130967.1 54309947 3123689 3239486..3240454 1 NC_006370.1 ABC transporter substrate-binding protein 3240454 3123689 PBPRA2793 Photobacterium profundum SS9 ABC transporter substrate-binding protein YP_130967.1 3239486 D 298386 CDS YP_130968.1 54309948 3123640 3240554..3241480 1 NC_006370.1 ABC transporter, permease protein 3241480 3123640 PBPRA2794 Photobacterium profundum SS9 ABC transporter, permease protein YP_130968.1 3240554 D 298386 CDS YP_130969.1 54309949 3123766 3241490..3242284 1 NC_006370.1 ABC transporter, ATP-binding protein 3242284 3123766 PBPRA2795 Photobacterium profundum SS9 ABC transporter, ATP-binding protein YP_130969.1 3241490 D 298386 CDS YP_130970.1 54309950 3123748 3242606..3242917 1 NC_006370.1 hypothetical protein 3242917 3123748 PBPRA2796 Photobacterium profundum SS9 hypothetical protein YP_130970.1 3242606 D 298386 CDS YP_130971.1 54309951 3123952 complement(3243116..3243628) 1 NC_006370.1 hypothetical protein 3243628 3123952 PBPRA2797 Photobacterium profundum SS9 hypothetical protein YP_130971.1 3243116 R 298386 CDS YP_130972.1 54309952 3123821 3243901..3245097 1 NC_006370.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 3245097 3123821 PBPRA2798 Photobacterium profundum SS9 acetate kinase YP_130972.1 3243901 D 298386 CDS YP_130973.1 54309953 3123839 3245262..3247418 1 NC_006370.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 3247418 3123839 PBPRA2799 Photobacterium profundum SS9 phosphate acetyltransferase YP_130973.1 3245262 D 298386 CDS YP_130974.1 54309954 3124026 3247730..3248707 1 NC_006370.1 hypothetical protein 3248707 3124026 PBPRA2800 Photobacterium profundum SS9 hypothetical protein YP_130974.1 3247730 D 298386 CDS YP_130975.1 54309955 3123987 3248704..3249081 1 NC_006370.1 hypothetical protein 3249081 3123987 PBPRA2801 Photobacterium profundum SS9 hypothetical protein YP_130975.1 3248704 D 298386 CDS YP_130976.1 54309956 3124094 3249147..3249416 1 NC_006370.1 hypothetical protein 3249416 3124094 PBPRA2802 Photobacterium profundum SS9 hypothetical protein YP_130976.1 3249147 D 298386 CDS YP_130977.1 54309957 3124060 3249648..3249914 1 NC_006370.1 hypothetical protein 3249914 3124060 PBPRA2803 Photobacterium profundum SS9 hypothetical protein YP_130977.1 3249648 D 298386 CDS YP_130978.1 54309958 3124111 complement(3249959..3250216) 1 NC_006370.1 hypothetical protein 3250216 3124111 PBPRA2804 Photobacterium profundum SS9 hypothetical protein YP_130978.1 3249959 R 298386 CDS YP_130979.1 54309959 3124218 3250344..3251096 1 NC_006370.1 transposase 3251096 3124218 PBPRA2805 Photobacterium profundum SS9 transposase YP_130979.1 3250344 D 298386 CDS YP_130980.1 54309960 3124210 3251181..3252746 1 NC_006370.1 hypothetical protein 3252746 3124210 PBPRA2806 Photobacterium profundum SS9 hypothetical protein YP_130980.1 3251181 D 298386 CDS YP_130981.1 54309961 3124177 complement(3253096..3253941) 1 NC_006370.1 formate transporter 1 3253941 3124177 PBPRA2807 Photobacterium profundum SS9 formate transporter 1 YP_130981.1 3253096 R 298386 CDS YP_130982.1 54309962 3124380 complement(3254489..3255037) 1 NC_006370.1 phosphodiesterase 3255037 3124380 PBPRA2808 Photobacterium profundum SS9 phosphodiesterase YP_130982.1 3254489 R 298386 CDS YP_130983.1 54309963 3124284 complement(3255156..3255572) 1 NC_006370.1 hypothetical protein 3255572 3124284 PBPRA2809 Photobacterium profundum SS9 hypothetical protein YP_130983.1 3255156 R 298386 CDS YP_130984.1 54309964 3124463 complement(3255584..3255934) 1 NC_006370.1 nitrogen regulatory protein P-II family protein 3255934 3124463 PBPRA2810 Photobacterium profundum SS9 nitrogen regulatory protein P-II family protein YP_130984.1 3255584 R 298386 CDS YP_130985.1 54309965 3124682 complement(3255934..3256716) 1 NC_006370.1 PTS system mannose-specific, factor IIC 3256716 3124682 PBPRA2811 Photobacterium profundum SS9 PTS system mannose-specific, factor IIC YP_130985.1 3255934 R 298386 CDS YP_130986.1 54309966 3124658 complement(3256735..3257469) 1 NC_006370.1 PTS system mannose-specific, factor IIC 3257469 3124658 PBPRA2812 Photobacterium profundum SS9 PTS system mannose-specific, factor IIC YP_130986.1 3256735 R 298386 CDS YP_130987.1 54309967 3124611 3257836..3258753 1 NC_006370.1 sugar nucleotide epimerase 3258753 3124611 PBPRA2813 Photobacterium profundum SS9 sugar nucleotide epimerase YP_130987.1 3257836 D 298386 CDS YP_130988.1 54309968 3124604 complement(3258820..3261285) 1 NC_006370.1 permease 3261285 3124604 PBPRA2814 Photobacterium profundum SS9 permease YP_130988.1 3258820 R 298386 CDS YP_130989.1 54309969 3124688 complement(3261282..3261944) 1 NC_006370.1 ABC transporter ATP-binding protein 3261944 3124688 PBPRA2815 Photobacterium profundum SS9 ABC transporter ATP-binding protein YP_130989.1 3261282 R 298386 CDS YP_130990.1 54309970 3124749 3261814..3262554 1 NC_006370.1 arylesterase 3262554 3124749 PBPRA2816 Photobacterium profundum SS9 arylesterase YP_130990.1 3261814 D 298386 CDS YP_130991.1 54309971 3124730 complement(3262759..3264846) 1 NC_006370.1 hypothetical protein 3264846 3124730 PBPRA2817 Photobacterium profundum SS9 hypothetical protein YP_130991.1 3262759 R 298386 CDS YP_130992.1 54309972 3124629 complement(3265857..3266684) 1 NC_006370.1 short chain dehydrogenase/reductase family oxidoreductase 3266684 3124629 PBPRA2818 Photobacterium profundum SS9 short chain dehydrogenase/reductase family oxidoreductase YP_130992.1 3265857 R 298386 CDS YP_130993.1 54309973 3124486 3267398..3268252 1 NC_006370.1 thioredoxin-like protein 3268252 3124486 PBPRA2819 Photobacterium profundum SS9 thioredoxin-like protein YP_130993.1 3267398 D 298386 CDS YP_130994.1 54309974 3124425 complement(3268333..3268893) 1 NC_006370.1 heat shock protein 3268893 3124425 PBPRA2820 Photobacterium profundum SS9 heat shock protein YP_130994.1 3268333 R 298386 CDS YP_130995.1 54309975 3124250 complement(3268934..3269893) 1 NC_006370.1 hypothetical protein 3269893 3124250 PBPRA2821 Photobacterium profundum SS9 hypothetical protein YP_130995.1 3268934 R 298386 CDS YP_130996.1 54309976 3124350 3270578..3271213 1 NC_006370.1 hypothetical protein 3271213 3124350 PBPRA2822 Photobacterium profundum SS9 hypothetical protein YP_130996.1 3270578 D 298386 CDS YP_130997.1 54309977 3124349 complement(3271637..3272101) 1 NC_006370.1 SoxR family transcriptional regulator 3272101 3124349 PBPRA2823 Photobacterium profundum SS9 SoxR family transcriptional regulator YP_130997.1 3271637 R 298386 CDS YP_130998.1 54309978 3122156 3272255..3275152 1 NC_006370.1 cation-transporting ATPase 3275152 3122156 PBPRA2824 Photobacterium profundum SS9 cation-transporting ATPase YP_130998.1 3272255 D 298386 CDS YP_130999.1 54309979 3124846 3275393..3276253 1 NC_006370.1 hypothetical protein 3276253 3124846 PBPRA2825 Photobacterium profundum SS9 hypothetical protein YP_130999.1 3275393 D 298386 CDS YP_131000.1 54309980 3123284 3278714..3278854 1 NC_006370.1 hypothetical protein 3278854 3123284 PBPRA2831 Photobacterium profundum SS9 hypothetical protein YP_131000.1 3278714 D 298386 CDS YP_131001.1 54309981 3123385 3279248..3279829 1 NC_006370.1 hypothetical protein 3279829 3123385 PBPRA2832 Photobacterium profundum SS9 hypothetical protein YP_131001.1 3279248 D 298386 CDS YP_131002.1 54309982 3123254 complement(3279933..3280586) 1 NC_006370.1 threonine efflux protein 3280586 3123254 PBPRA2833 Photobacterium profundum SS9 threonine efflux protein YP_131002.1 3279933 R 298386 CDS YP_131003.1 54309983 3122445 complement(3280603..3281547) 1 NC_006370.1 LysR family transcriptional regulator 3281547 3122445 PBPRA2834 Photobacterium profundum SS9 LysR family transcriptional regulator YP_131003.1 3280603 R 298386 CDS YP_131004.1 54309984 3122760 complement(3281558..3282064) 1 NC_006370.1 hypothetical protein 3282064 3122760 PBPRA2835 Photobacterium profundum SS9 hypothetical protein YP_131004.1 3281558 R 298386 CDS YP_131005.1 54309985 3122748 complement(3282244..3283926) 1 NC_006370.1 catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor 3283926 ushA 3122748 ushA Photobacterium profundum SS9 bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor YP_131005.1 3282244 R 298386 CDS YP_131006.1 54309986 3122436 complement(3284196..3285551) 1 NC_006370.1 Na+/H+ antiporter 3285551 3122436 PBPRA2837 Photobacterium profundum SS9 Na+/H+ antiporter YP_131006.1 3284196 R 298386 CDS YP_131007.1 54309987 3122545 3285790..3287670 1 NC_006370.1 methyl-accepting chemotaxis protein 3287670 3122545 PBPRA2838 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_131007.1 3285790 D 298386 CDS YP_131008.1 54309988 3122592 3287913..3289796 1 NC_006370.1 methyl-accepting chemotaxis protein 3289796 3122592 PBPRA2839 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_131008.1 3287913 D 298386 CDS YP_131009.1 54309989 3122609 complement(3289883..3291139) 1 NC_006370.1 serine transporter 3291139 3122609 PBPRA2840 Photobacterium profundum SS9 serine transporter YP_131009.1 3289883 R 298386 CDS YP_131010.1 54309990 3122591 complement(3291450..3292304) 1 NC_006370.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 3292304 3122591 PBPRA2841 Photobacterium profundum SS9 2-dehydro-3-deoxyphosphooctonate aldolase YP_131010.1 3291450 R 298386 CDS YP_131011.1 54309991 3122778 complement(3292324..3293133) 1 NC_006370.1 hypothetical protein 3293133 3122778 PBPRA2842 Photobacterium profundum SS9 hypothetical protein YP_131011.1 3292324 R 298386 CDS YP_131012.1 54309992 3123757 complement(3293136..3293516) 1 NC_006370.1 hypothetical protein 3293516 3123757 PBPRA2843 Photobacterium profundum SS9 hypothetical protein YP_131012.1 3293136 R 298386 CDS YP_131013.1 54309993 3122461 complement(3293529..3294377) 1 NC_006370.1 HemK protein, methylase of polypeptide chain release factors 3294377 3122461 PBPRA2844 Photobacterium profundum SS9 HemK protein, methylase of polypeptide chain release factors YP_131013.1 3293529 R 298386 CDS YP_131014.1 54309994 3122519 complement(3294377..3295465) 1 NC_006370.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 3295465 prfA 3122519 prfA Photobacterium profundum SS9 peptide chain release factor 1 YP_131014.1 3294377 R 298386 CDS YP_131015.1 54309995 3122003 complement(3295478..3296740) 1 NC_006370.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 3296740 hemA 3122003 hemA Photobacterium profundum SS9 glutamyl-tRNA reductase YP_131015.1 3295478 R 298386 CDS YP_131016.1 54309996 3122002 3297089..3297760 1 NC_006370.1 molecular chaperone LolB 3297760 3122002 PBPRA2847 Photobacterium profundum SS9 molecular chaperone LolB YP_131016.1 3297089 D 298386 CDS YP_131017.1 54309997 3125430 3297769..3298659 1 NC_006370.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 3298659 ipk 3125430 ipk Photobacterium profundum SS9 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_131017.1 3297769 D 298386 CDS YP_131018.1 54309998 3124832 3298692..3299639 1 NC_006370.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 3299639 3124832 PBPRA2849 Photobacterium profundum SS9 ribose-phosphate pyrophosphokinase YP_131018.1 3298692 D 298386 CDS YP_131019.1 54309999 3122170 3299955..3300545 1 NC_006370.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 3300545 3122170 PBPRA2850 Photobacterium profundum SS9 peptidyl-tRNA hydrolase YP_131019.1 3299955 D 298386 CDS YP_131020.1 54310000 3125501 3300649..3301740 1 NC_006370.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 3301740 3125501 PBPRA2851 Photobacterium profundum SS9 GTP-dependent nucleic acid-binding protein EngD YP_131020.1 3300649 D 298386 CDS YP_131021.1 54310001 3124167 complement(3305760..3307019) 1 NC_006370.1 catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 3307019 3124167 PBPRA2876 Photobacterium profundum SS9 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_131021.1 3305760 R 298386 CDS YP_131022.1 54310002 3123437 3307153..3307791 1 NC_006370.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 3307791 mtgA 3123437 mtgA Photobacterium profundum SS9 monofunctional biosynthetic peptidoglycan transglycosylase YP_131022.1 3307153 D 298386 CDS YP_131023.1 54310003 3123535 3308002..3309426 1 NC_006370.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 3309426 3123535 PBPRA2878 Photobacterium profundum SS9 (dimethylallyl)adenosine tRNA methylthiotransferase YP_131023.1 3308002 D 298386 CDS YP_131024.1 54310004 3124383 3309541..3310602 1 NC_006370.1 phoH family protein 3310602 3124383 PBPRA2879 Photobacterium profundum SS9 phoH family protein YP_131024.1 3309541 D 298386 CDS YP_131025.1 54310005 3124379 3310609..3311073 1 NC_006370.1 metalloprotease 3311073 3124379 PBPRA2880 Photobacterium profundum SS9 metalloprotease YP_131025.1 3310609 D 298386 CDS YP_131026.1 54310006 3124274 3311175..3312047 1 NC_006370.1 hemolysin 3312047 3124274 PBPRA2881 Photobacterium profundum SS9 hemolysin YP_131026.1 3311175 D 298386 CDS YP_131027.1 54310007 3123024 3312050..3313603 1 NC_006370.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 3313603 lnt 3123024 lnt Photobacterium profundum SS9 apolipoprotein N-acyltransferase YP_131027.1 3312050 D 298386 CDS YP_131028.1 54310008 3123386 3313699..3314376 1 NC_006370.1 hypothetical protein 3314376 3123386 PBPRA2883 Photobacterium profundum SS9 hypothetical protein YP_131028.1 3313699 D 298386 CDS YP_131029.1 54310009 3122950 complement(3314480..3314962) 1 NC_006370.1 hypothetical protein 3314962 3122950 PBPRA2884 Photobacterium profundum SS9 hypothetical protein YP_131029.1 3314480 R 298386 CDS YP_131030.1 54310010 3122219 3315411..3317987 1 NC_006370.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 3317987 leuS 3122219 leuS Photobacterium profundum SS9 leucyl-tRNA synthetase YP_131030.1 3315411 D 298386 CDS YP_131031.1 54310011 3122137 3318171..3318884 1 NC_006370.1 rare lipoprotein B 3318884 3122137 PBPRA2886 Photobacterium profundum SS9 rare lipoprotein B YP_131031.1 3318171 D 298386 CDS YP_131032.1 54310012 3122793 3318881..3319912 1 NC_006370.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 3319912 holA 3122793 holA Photobacterium profundum SS9 DNA polymerase III subunit delta YP_131032.1 3318881 D 298386 CDS YP_131033.1 54310013 3124423 3320134..3320451 1 NC_006370.1 hypothetical protein 3320451 3124423 PBPRA2888 Photobacterium profundum SS9 hypothetical protein YP_131033.1 3320134 D 298386 CDS YP_131034.2 229557965 3122527 3320458..3320928 1 NC_006370.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 3320928 3122527 PBPRA2889 Photobacterium profundum SS9 rRNA large subunit methyltransferase YP_131034.2 3320458 D 298386 CDS YP_131035.1 54310015 3122521 3320935..3322878 1 NC_006370.1 penicillin-binding protein 2 3322878 3122521 PBPRA2890 Photobacterium profundum SS9 penicillin-binding protein 2 YP_131035.1 3320935 D 298386 CDS YP_131036.1 54310016 3122343 3322884..3323996 1 NC_006370.1 rod shape-determining protein RodA 3323996 3122343 PBPRA2891 Photobacterium profundum SS9 rod shape-determining protein RodA YP_131036.1 3322884 D 298386 CDS YP_131037.1 54310017 3122146 3323997..3324902 1 NC_006370.1 rare lipoprotein A 3324902 3122146 PBPRA2892 Photobacterium profundum SS9 rare lipoprotein A YP_131037.1 3323997 D 298386 CDS YP_131038.1 54310018 3125482 3325054..3326229 1 NC_006370.1 D-alanyl-D-alanine carboxypeptidase 3326229 3125482 PBPRA2893 Photobacterium profundum SS9 D-alanyl-D-alanine carboxypeptidase YP_131038.1 3325054 D 298386 CDS YP_131039.1 54310019 3122767 3326367..3326693 1 NC_006370.1 hypothetical protein 3326693 3122767 PBPRA2894 Photobacterium profundum SS9 hypothetical protein YP_131039.1 3326367 D 298386 CDS YP_131040.1 54310020 3121974 3326848..3327492 1 NC_006370.1 lipoyl-[acyl-carrier protein]-protein-N-lipoyltransferse; lipoate-protein ligase B; transfers lipoate to apolipoproteins; involved in lipoate metabolism; lipoyltransferase 3327492 lipB 3121974 lipB Photobacterium profundum SS9 lipoyltransferase YP_131040.1 3326848 D 298386 CDS YP_131041.1 54310021 3124044 3327495..3328463 1 NC_006370.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 3328463 3124044 PBPRA2896 Photobacterium profundum SS9 lipoyl synthase YP_131041.1 3327495 D 298386 CDS YP_131042.1 54310022 3124033 complement(3328549..3329577) 1 NC_006370.1 lipoprotein 3329577 3124033 PBPRA2897 Photobacterium profundum SS9 lipoprotein YP_131042.1 3328549 R 298386 CDS YP_131043.1 54310023 3125077 complement(3329609..3330496) 1 NC_006370.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 3330496 dapA 3125077 dapA Photobacterium profundum SS9 dihydrodipicolinate synthase YP_131043.1 3329609 R 298386 CDS YP_131044.1 54310024 3123544 3330741..3331292 1 NC_006370.1 glycine cleavage system transcriptional repressor 3331292 3123544 PBPRA2899 Photobacterium profundum SS9 glycine cleavage system transcriptional repressor YP_131044.1 3330741 D 298386 CDS YP_131045.1 54310025 3125090 3331358..3331828 1 NC_006370.1 bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 3331828 bcp 3125090 bcp Photobacterium profundum SS9 thioredoxin-dependent thiol peroxidase YP_131045.1 3331358 D 298386 CDS YP_131046.1 54310026 3122619 complement(3331919..3332989) 1 NC_006370.1 permease PerM 3332989 3122619 PBPRA2901 Photobacterium profundum SS9 permease PerM YP_131046.1 3331919 R 298386 CDS YP_131047.1 54310027 3122599 3333409..3334866 1 NC_006370.1 Zn-dependent protease 3334866 3122599 PBPRA2902 Photobacterium profundum SS9 Zn-dependent protease YP_131047.1 3333409 D 298386 CDS YP_131048.1 54310028 3123009 3335018..3335368 1 NC_006370.1 arsenate reductase ArsC 3335368 3123009 PBPRA2903 Photobacterium profundum SS9 arsenate reductase ArsC YP_131048.1 3335018 D 298386 CDS YP_131049.1 54310029 3123681 3335368..3335952 1 NC_006370.1 Trp repressor-binding protein 3335952 3123681 PBPRA2904 Photobacterium profundum SS9 Trp repressor-binding protein YP_131049.1 3335368 D 298386 CDS YP_131050.1 54310030 3123659 3335996..3336430 1 NC_006370.1 hypothetical protein 3336430 3123659 PBPRA2905 Photobacterium profundum SS9 hypothetical protein YP_131050.1 3335996 D 298386 CDS YP_131051.1 54310031 3122328 complement(3336492..3337721) 1 NC_006370.1 hypothetical protein 3337721 3122328 PBPRA2906 Photobacterium profundum SS9 hypothetical protein YP_131051.1 3336492 R 298386 CDS YP_131052.1 54310032 3122349 3338125..3339378 1 NC_006370.1 uracil permease 3339378 3122349 PBPRA2907 Photobacterium profundum SS9 uracil permease YP_131052.1 3338125 D 298386 CDS YP_131053.1 54310033 3123558 complement(3339453..3339887) 1 NC_006370.1 transposase 3339887 3123558 PBPRA2908 Photobacterium profundum SS9 transposase YP_131053.1 3339453 R 298386 CDS YP_131054.1 54310034 3125381 complement(3340070..3340696) 1 NC_006370.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 3340696 upp 3125381 upp Photobacterium profundum SS9 uracil phosphoribosyltransferase YP_131054.1 3340070 R 298386 CDS YP_131055.1 54310035 3124086 3340886..3341926 1 NC_006370.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 3341926 3124086 PBPRA2910 Photobacterium profundum SS9 phosphoribosylaminoimidazole synthetase YP_131055.1 3340886 D 298386 CDS YP_131056.1 54310036 3123875 3341931..3342575 1 NC_006370.1 phosphoribosylglycinamide formyltransferase 2 3342575 3123875 PBPRA2911 Photobacterium profundum SS9 phosphoribosylglycinamide formyltransferase 2 YP_131056.1 3341931 D 298386 CDS YP_131057.1 54310037 3122404 complement(3342637..3343500) 1 NC_006370.1 amidotransferase 3343500 3122404 PBPRA2912 Photobacterium profundum SS9 amidotransferase YP_131057.1 3342637 R 298386 CDS YP_131058.1 54310038 3122357 complement(3343478..3344056) 1 NC_006370.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 3344056 gmhA 3122357 gmhA Photobacterium profundum SS9 phosphoheptose isomerase YP_131058.1 3343478 R 298386 CDS YP_131059.1 54310039 3124376 complement(3344121..3345863) 1 NC_006370.1 role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; sulfate transporter YchM 3345863 3124376 PBPRA2914 Photobacterium profundum SS9 sulfate transporter YchM YP_131059.1 3344121 R 298386 CDS YP_131060.1 54310040 3123398 3346324..3348792 1 NC_006370.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 3348792 fadE 3123398 fadE Photobacterium profundum SS9 acyl-CoA dehydrogenase YP_131060.1 3346324 D 298386 CDS YP_131061.1 54310041 3122263 complement(3348900..3350141) 1 NC_006370.1 hypothetical protein 3350141 3122263 PBPRA2916 Photobacterium profundum SS9 hypothetical protein YP_131061.1 3348900 R 298386 CDS YP_131062.1 54310042 3124322 complement(3350149..3350889) 1 NC_006370.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 3350889 3124322 PBPRA2917 Photobacterium profundum SS9 DNA polymerase III subunit epsilon YP_131062.1 3350149 R 298386 CDS YP_131063.1 54310043 3124147 3350860..3351399 1 NC_006370.1 ribonuclease HI 3351399 3124147 PBPRA2918 Photobacterium profundum SS9 ribonuclease HI YP_131063.1 3350860 D 298386 CDS YP_131064.1 54310044 3124868 complement(3351457..3352200) 1 NC_006370.1 SAM-dependent methyltransferase 3352200 3124868 PBPRA2919 Photobacterium profundum SS9 SAM-dependent methyltransferase YP_131064.1 3351457 R 298386 CDS YP_131065.1 54310045 3122245 3352206..3353000 1 NC_006370.1 hydroxyacylglutathione hydrolase GloB 3353000 3122245 PBPRA2920 Photobacterium profundum SS9 hydroxyacylglutathione hydrolase GloB YP_131065.1 3352206 D 298386 CDS YP_131066.1 54310046 3124795 3353071..3354642 1 NC_006370.1 membrane-bound lytic murein transglycosylase D 3354642 3124795 PBPRA2921 Photobacterium profundum SS9 membrane-bound lytic murein transglycosylase D YP_131066.1 3353071 D 298386 CDS YP_131067.1 54310047 3122346 3354639..3355328 1 NC_006370.1 hypothetical protein 3355328 3122346 PBPRA2922 Photobacterium profundum SS9 hypothetical protein YP_131067.1 3354639 D 298386 CDS YP_131068.1 54310048 3125362 complement(3355309..3356160) 1 NC_006370.1 hypothetical protein 3356160 3125362 PBPRA2923 Photobacterium profundum SS9 hypothetical protein YP_131068.1 3355309 R 298386 CDS YP_131069.1 54310049 3125092 complement(3356240..3356632) 1 NC_006370.1 hypothetical protein 3356632 3125092 PBPRA2924 Photobacterium profundum SS9 hypothetical protein YP_131069.1 3356240 R 298386 CDS YP_131070.1 54310050 3123243 complement(3363212..3364234) 1 NC_006370.1 ABC-type oligopeptide transportsystem, ATPase component 3364234 3123243 PBPRA2934 Photobacterium profundum SS9 ABC-type oligopeptide transportsystem, ATPase component YP_131070.1 3363212 R 298386 CDS YP_131071.1 54310051 3125526 complement(3364207..3365193) 1 NC_006370.1 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 3365193 3125526 PBPRA2935 Photobacterium profundum SS9 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component YP_131071.1 3364207 R 298386 CDS YP_131072.1 54310052 3125273 complement(3365211..3367037) 1 NC_006370.1 binding protein component ofABC transporter 3367037 3125273 PBPRA2936 Photobacterium profundum SS9 binding protein component ofABC transporter YP_131072.1 3365211 R 298386 CDS YP_131073.1 54310053 3123258 complement(3367066..3368109) 1 NC_006370.1 peptide ABC transporter,permease protein 3368109 3123258 PBPRA2937 Photobacterium profundum SS9 peptide ABC transporter,permease protein YP_131073.1 3367066 R 298386 CDS YP_131074.1 54310054 3123159 complement(3368110..3369135) 1 NC_006370.1 transmembrane ABC transporterprotein 3369135 3123159 PBPRA2938 Photobacterium profundum SS9 transmembrane ABC transporterprotein YP_131074.1 3368110 R 298386 CDS YP_131075.1 54310055 3123498 complement(3369712..3370266) 1 NC_006370.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 3370266 3123498 PBPRA2939 Photobacterium profundum SS9 D,D-heptose 1,7-bisphosphate phosphatase YP_131075.1 3369712 R 298386 CDS YP_131076.2 161936296 3122911 3370566..3371600 1 NC_006370.1 part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 3371600 metN 3122911 metN Photobacterium profundum SS9 DL-methionine transporter ATP-binding subunit YP_131076.2 3370566 D 298386 CDS YP_131077.1 54310057 3124619 3371590..3372276 1 NC_006370.1 ABC-type metal ion transport system,permease component 3372276 3124619 PBPRA2941 Photobacterium profundum SS9 ABC-type metal ion transport system,permease component YP_131077.1 3371590 D 298386 CDS YP_131078.1 54310058 3123702 3372379..3373194 1 NC_006370.1 DL-methionine transporter substrate-binding subunit 3373194 metQ 3123702 metQ Photobacterium profundum SS9 DL-methionine transporter substrate-binding subunit YP_131078.1 3372379 D 298386 CDS YP_131079.1 54310059 3125437 3373572..3374273 1 NC_006370.1 hypothetical protein 3374273 3125437 PBPRA2943 Photobacterium profundum SS9 hypothetical protein YP_131079.1 3373572 D 298386 CDS YP_131080.1 54310060 3125474 3374365..3376080 1 NC_006370.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 3376080 3125474 PBPRA2944 Photobacterium profundum SS9 prolyl-tRNA synthetase YP_131080.1 3374365 D 298386 CDS YP_131081.1 54310061 3124537 3376621..3377745 1 NC_006370.1 hypothetical protein 3377745 3124537 PBPRA2945 Photobacterium profundum SS9 hypothetical protein YP_131081.1 3376621 D 298386 CDS YP_131082.1 54310062 3122644 3377838..3378692 1 NC_006370.1 hypothetical protein 3378692 3122644 PBPRA2946 Photobacterium profundum SS9 hypothetical protein YP_131082.1 3377838 D 298386 CDS YP_131083.1 54310063 3125311 3378824..3379027 1 NC_006370.1 hypothetical protein 3379027 3125311 PBPRA2947 Photobacterium profundum SS9 hypothetical protein YP_131083.1 3378824 D 298386 CDS YP_131084.1 54310064 3124978 3379030..3379218 1 NC_006370.1 hypothetical protein 3379218 3124978 PBPRA2948 Photobacterium profundum SS9 hypothetical protein YP_131084.1 3379030 D 298386 CDS YP_131085.1 54310065 3125081 complement(3379302..3380663) 1 NC_006370.1 sodium-dependent transporter 3380663 3125081 PBPRA2949 Photobacterium profundum SS9 sodium-dependent transporter YP_131085.1 3379302 R 298386 CDS YP_131086.1 54310066 3122804 complement(3380877..3381188) 1 NC_006370.1 cytochrome 3381188 3122804 PBPRA2950 Photobacterium profundum SS9 cytochrome YP_131086.1 3380877 R 298386 CDS YP_131087.1 54310067 3125259 complement(3381257..3382564) 1 NC_006370.1 cell cycle protein MesJ 3382564 3125259 PBPRA2951 Photobacterium profundum SS9 cell cycle protein MesJ YP_131087.1 3381257 R 298386 CDS YP_131088.1 54310068 3125481 complement(3382697..3383656) 1 NC_006370.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 3383656 3125481 PBPRA2952 Photobacterium profundum SS9 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_131088.1 3382697 R 298386 CDS YP_131089.1 54310069 3122432 complement(3383753..3387229) 1 NC_006370.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 3387229 dnaE 3122432 dnaE Photobacterium profundum SS9 DNA polymerase III subunit alpha YP_131089.1 3383753 R 298386 CDS YP_131090.1 54310070 3125015 complement(3387343..3387948) 1 NC_006370.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 3387948 rnhB 3125015 rnhB Photobacterium profundum SS9 ribonuclease HII YP_131090.1 3387343 R 298386 CDS YP_131091.1 54310071 3125363 complement(3387958..3389100) 1 NC_006370.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 3389100 lpxB 3125363 lpxB Photobacterium profundum SS9 lipid-A-disaccharide synthase YP_131091.1 3387958 R 298386 CDS YP_131092.1 54310072 3122483 complement(3389100..3389909) 1 NC_006370.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 3389909 3122483 PBPRA2956 Photobacterium profundum SS9 UDP-N-acetylglucosamine acyltransferase YP_131092.1 3389100 R 298386 CDS YP_131093.1 54310073 3122129 complement(3389888..3390340) 1 NC_006370.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 3390340 fabZ 3122129 fabZ Photobacterium profundum SS9 (3R)-hydroxymyristoyl-ACP dehydratase YP_131093.1 3389888 R 298386 CDS YP_131094.1 54310074 3122623 complement(3390465..3391490) 1 NC_006370.1 UDP-3-O- glucosamine N-acyltransferase 3391490 3122623 PBPRA2958 Photobacterium profundum SS9 UDP-3-O- glucosamine N-acyltransferase YP_131094.1 3390465 R 298386 CDS YP_131095.1 54310075 3122496 complement(3391571..3392146) 1 NC_006370.1 outer membrane protein OmpH 3392146 3122496 PBPRA2959 Photobacterium profundum SS9 outer membrane protein OmpH YP_131095.1 3391571 R 298386 CDS YP_131096.1 54310076 3122714 complement(3392100..3394517) 1 NC_006370.1 part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins; outer membrane protein assembly factor YaeT 3394517 3122714 PBPRA2960 Photobacterium profundum SS9 outer membrane protein assembly factor YaeT YP_131096.1 3392100 R 298386 CDS YP_131097.1 54310077 3122465 complement(3394555..3395916) 1 NC_006370.1 membrane-associated Zn-dependent protease 3395916 3122465 PBPRA2961 Photobacterium profundum SS9 membrane-associated Zn-dependent protease YP_131097.1 3394555 R 298386 CDS YP_131098.1 54310078 3122712 complement(3395913..3397106) 1 NC_006370.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 3397106 3122712 PBPRA2962 Photobacterium profundum SS9 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_131098.1 3395913 R 298386 CDS YP_131099.1 54310079 3122699 complement(3397169..3398017) 1 NC_006370.1 phosphatidate cytidylyltransferase 3398017 3122699 PBPRA2963 Photobacterium profundum SS9 phosphatidate cytidylyltransferase YP_131099.1 3397169 R 298386 CDS YP_131100.1 54310080 3122652 complement(3398130..3398894) 1 NC_006370.1 undecaprenyl diphosphate synthase 3398894 3122652 PBPRA2964 Photobacterium profundum SS9 undecaprenyl diphosphate synthase YP_131100.1 3398130 R 298386 CDS YP_131101.1 54310081 3122437 complement(3398981..3399538) 1 NC_006370.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 3399538 frr 3122437 frr Photobacterium profundum SS9 ribosome recycling factor YP_131101.1 3398981 R 298386 CDS YP_131102.1 54310082 3122770 complement(3399682..3400404) 1 NC_006370.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 3400404 pyrH 3122770 pyrH Photobacterium profundum SS9 uridylate kinase YP_131102.1 3399682 R 298386 CDS YP_131103.2 161936295 3123149 complement(3400503..3401357) 1 NC_006370.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 3401357 tsf 3123149 tsf Photobacterium profundum SS9 elongation factor Ts YP_131103.2 3400503 R 298386 CDS YP_131104.1 54310084 3122421 complement(3401469..3402197) 1 NC_006370.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 3402197 rpsB 3122421 rpsB Photobacterium profundum SS9 30S ribosomal protein S2 YP_131104.1 3401469 R 298386 CDS YP_131105.1 54310085 3123743 3402524..3403351 1 NC_006370.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 3403351 3123743 PBPRA2969 Photobacterium profundum SS9 methionine aminopeptidase YP_131105.1 3402524 D 298386 CDS YP_131106.1 54310086 3123062 3403493..3406117 1 NC_006370.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 3406117 3123062 PBPRA2970 Photobacterium profundum SS9 PII uridylyl-transferase YP_131106.1 3403493 D 298386 CDS YP_131107.1 54310087 3123309 3406306..3406686 1 NC_006370.1 hypothetical protein 3406686 3123309 PBPRA2971 Photobacterium profundum SS9 hypothetical protein YP_131107.1 3406306 D 298386 CDS YP_131108.1 54310088 3123098 complement(3406732..3407187) 1 NC_006370.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 3407187 3123098 PBPRA2972 Photobacterium profundum SS9 flavodoxin YP_131108.1 3406732 R 298386 CDS YP_131109.1 54310089 3123056 complement(3407314..3408051) 1 NC_006370.1 catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; tRNA pseudouridine synthase C 3408051 3123056 PBPRA2973 Photobacterium profundum SS9 tRNA pseudouridine synthase C YP_131109.1 3407314 R 298386 CDS YP_131110.1 54310090 3123228 complement(3408054..3408374) 1 NC_006370.1 hypothetical protein 3408374 3123228 PBPRA2974 Photobacterium profundum SS9 hypothetical protein YP_131110.1 3408054 R 298386 CDS YP_131111.1 54310091 3123950 3408549..3409595 1 NC_006370.1 hypothetical protein 3409595 3123950 PBPRA2975 Photobacterium profundum SS9 hypothetical protein YP_131111.1 3408549 D 298386 CDS YP_131112.1 54310092 3123776 3409656..3409970 1 NC_006370.1 hypothetical protein 3409970 3123776 PBPRA2976 Photobacterium profundum SS9 hypothetical protein YP_131112.1 3409656 D 298386 CDS YP_131113.1 54310093 3123618 3412543..3412773 1 NC_006370.1 hypothetical protein 3412773 3123618 PBPRA2977 Photobacterium profundum SS9 hypothetical protein YP_131113.1 3412543 D 298386 CDS YP_131114.1 54310094 3123514 3412812..3413087 1 NC_006370.1 hypothetical protein 3413087 3123514 PBPRA2978 Photobacterium profundum SS9 hypothetical protein YP_131114.1 3412812 D 298386 CDS YP_131115.1 54310095 3124030 3413273..3414658 1 NC_006370.1 Tn5 transposase 3414658 3124030 PBPRA2979 Photobacterium profundum SS9 Tn5 transposase YP_131115.1 3413273 D 298386 CDS YP_131116.1 54310096 3125168 complement(3414715..3415488) 1 NC_006370.1 Zn-ribbon-containing protein 3415488 3125168 PBPRA2980 Photobacterium profundum SS9 Zn-ribbon-containing protein YP_131116.1 3414715 R 298386 CDS YP_131117.1 54310097 3123817 complement(3415491..3416057) 1 NC_006370.1 SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd 3416057 3123817 PBPRA2981 Photobacterium profundum SS9 SecY interacting protein Syd YP_131117.1 3415491 R 298386 CDS YP_131118.1 54310098 3124050 3416201..3417046 1 NC_006370.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3417046 queF 3124050 queF Photobacterium profundum SS9 7-cyano-7-deazaguanine reductase YP_131118.1 3416201 D 298386 CDS YP_131119.1 54310099 3124563 3417164..3419443 1 NC_006370.1 hypothetical protein 3419443 3124563 PBPRA2983 Photobacterium profundum SS9 hypothetical protein YP_131119.1 3417164 D 298386 CDS YP_131120.1 54310100 3124415 3419581..3421140 1 NC_006370.1 hypothetical protein 3421140 3124415 PBPRA2984 Photobacterium profundum SS9 hypothetical protein YP_131120.1 3419581 D 298386 CDS YP_131121.1 54310101 3124416 3421435..3422808 1 NC_006370.1 hypothetical protein 3422808 3124416 PBPRA2985 Photobacterium profundum SS9 hypothetical protein YP_131121.1 3421435 D 298386 CDS YP_131122.1 54310102 3124700 3422834..3423670 1 NC_006370.1 has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 3423670 xni 3124700 xni Photobacterium profundum SS9 exonuclease IX YP_131122.1 3422834 D 298386 CDS YP_131123.1 54310103 3124633 complement(3423796..3424878) 1 NC_006370.1 RNA 2'-O-ribose methyltransferase 3424878 3124633 PBPRA2987 Photobacterium profundum SS9 RNA 2'-O-ribose methyltransferase YP_131123.1 3423796 R 298386 CDS YP_131124.1 54310104 3124195 complement(3424888..3425262) 1 NC_006370.1 hypothetical protein 3425262 3124195 PBPRA2988 Photobacterium profundum SS9 hypothetical protein YP_131124.1 3424888 R 298386 CDS YP_131125.1 54310105 3124643 complement(3425252..3425962) 1 NC_006370.1 hypothetical protein 3425962 3124643 PBPRA2989 Photobacterium profundum SS9 hypothetical protein YP_131125.1 3425252 R 298386 CDS YP_131126.1 54310106 3124726 complement(3425955..3426863) 1 NC_006370.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 3426863 3124726 PBPRA2990 Photobacterium profundum SS9 DNA-binding transcriptional activator GcvA YP_131126.1 3425955 R 298386 CDS YP_131127.1 54310107 3124292 3427302..3428522 1 NC_006370.1 aminotransferase, class V 3428522 3124292 PBPRA2991 Photobacterium profundum SS9 aminotransferase, class V YP_131127.1 3427302 D 298386 CDS YP_131128.1 54310108 3124363 3428537..3428971 1 NC_006370.1 hypothetical protein 3428971 3124363 PBPRA2992 Photobacterium profundum SS9 hypothetical protein YP_131128.1 3428537 D 298386 CDS YP_131129.1 54310109 3123995 complement(3429091..3429903) 1 NC_006370.1 HesA/MoeB/ThiF family protein 3429903 3123995 PBPRA2993 Photobacterium profundum SS9 HesA/MoeB/ThiF family protein YP_131129.1 3429091 R 298386 CDS YP_131130.1 54310110 3124283 complement(3430036..3431139) 1 NC_006370.1 membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase A 3431139 mltA 3124283 mltA Photobacterium profundum SS9 murein transglycosylase A YP_131130.1 3430036 R 298386 CDS YP_131131.1 54310111 3123846 complement(3431395..3431769) 1 NC_006370.1 hypothetical protein 3431769 3123846 PBPRA2995 Photobacterium profundum SS9 hypothetical protein YP_131131.1 3431395 R 298386 CDS YP_131132.1 54310112 3123697 3431957..3433282 1 NC_006370.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 3433282 3123697 PBPRA2996 Photobacterium profundum SS9 N-acetylglutamate synthase YP_131132.1 3431957 D 298386 CDS YP_131133.1 54310113 3123951 complement(3433343..3435466) 1 NC_006370.1 exodeoxyribonuclease V, 67 kDa subunit 3435466 3123951 PBPRA2997 Photobacterium profundum SS9 exodeoxyribonuclease V, 67 kDa subunit YP_131133.1 3433343 R 298386 CDS YP_131134.1 54310114 3123902 complement(3435441..3439124) 1 NC_006370.1 exodeoxyribonuclease V 3439124 3123902 PBPRA2998 Photobacterium profundum SS9 exodeoxyribonuclease V YP_131134.1 3435441 R 298386 CDS YP_131135.1 54310115 3123612 complement(3439531..3443010) 1 NC_006370.1 catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination; exonuclease V subunit gamma 3443010 recC 3123612 recC Photobacterium profundum SS9 exonuclease V subunit gamma YP_131135.1 3439531 R 298386 CDS YP_131136.1 54310116 3123647 complement(3443207..3444184) 1 NC_006370.1 hypothetical protein 3444184 3123647 PBPRA3000 Photobacterium profundum SS9 hypothetical protein YP_131136.1 3443207 R 298386 CDS YP_131137.1 54310117 3123764 3444368..3445258 1 NC_006370.1 transcriptional regulator 3445258 3123764 PBPRA3001 Photobacterium profundum SS9 transcriptional regulator YP_131137.1 3444368 D 298386 CDS YP_131138.1 54310118 3123941 complement(3445276..3445965) 1 NC_006370.1 hypothetical protein 3445965 3123941 PBPRA3002 Photobacterium profundum SS9 hypothetical protein YP_131138.1 3445276 R 298386 CDS YP_131139.1 54310119 3123150 3446040..3446348 1 NC_006370.1 DNA damage-inducible gene in sosregulon, dependent on cyclic AMP and H-NS 3446348 3123150 PBPRA3003 Photobacterium profundum SS9 DNA damage-inducible gene in sosregulon, dependent on cyclic AMP and H-NS YP_131139.1 3446040 D 298386 CDS YP_131140.1 54310120 3123351 3446651..3447682 1 NC_006370.1 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 3447682 3123351 PBPRA3004 Photobacterium profundum SS9 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase YP_131140.1 3446651 D 298386 CDS YP_131141.1 54310121 3123913 complement(3447775..3448110) 1 NC_006370.1 hypothetical protein 3448110 3123913 PBPRA3005 Photobacterium profundum SS9 hypothetical protein YP_131141.1 3447775 R 298386 CDS YP_131142.1 54310122 3123525 complement(3448198..3449394) 1 NC_006370.1 multidrug resistance protein 3449394 3123525 PBPRA3006 Photobacterium profundum SS9 multidrug resistance protein YP_131142.1 3448198 R 298386 CDS YP_131143.1 54310123 3123266 complement(3449508..3449810) 1 NC_006370.1 hypothetical protein 3449810 3123266 PBPRA3007 Photobacterium profundum SS9 hypothetical protein YP_131143.1 3449508 R 298386 CDS YP_131144.1 54310124 3123071 3450153..3450674 1 NC_006370.1 hypothetical protein 3450674 3123071 PBPRA3008 Photobacterium profundum SS9 hypothetical protein YP_131144.1 3450153 D 298386 CDS YP_131145.1 54310125 3123114 3450863..3451726 1 NC_006370.1 transposase 3451726 3123114 PBPRA3009 Photobacterium profundum SS9 transposase YP_131145.1 3450863 D 298386 CDS YP_131146.1 54310126 3123455 3451877..3452347 1 NC_006370.1 transposase and inactivated derivative 3452347 3123455 PBPRA3010 Photobacterium profundum SS9 transposase and inactivated derivative YP_131146.1 3451877 D 298386 CDS YP_131147.1 54310127 3122717 3452349..3452912 1 NC_006370.1 transposase and inactivated derivative 3452912 3122717 PBPRA3011 Photobacterium profundum SS9 transposase and inactivated derivative YP_131147.1 3452349 D 298386 CDS YP_131148.1 54310128 3124854 complement(3459381..3461966) 1 NC_006370.1 clpB, ATPase with chaperone activity 3461966 3124854 PBPRA3018 Photobacterium profundum SS9 clpB, ATPase with chaperone activity YP_131148.1 3459381 R 298386 CDS YP_131149.1 54310129 3124838 3462242..3462619 1 NC_006370.1 hypothetical protein 3462619 3124838 PBPRA3019 Photobacterium profundum SS9 hypothetical protein YP_131149.1 3462242 D 298386 CDS YP_131150.1 54310130 3124783 complement(3462738..3463490) 1 NC_006370.1 hypothetical protein 3463490 3124783 PBPRA3020 Photobacterium profundum SS9 hypothetical protein YP_131150.1 3462738 R 298386 CDS YP_131151.1 54310131 3124797 complement(3463492..3464466) 1 NC_006370.1 responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA; 23S rRNA pseudouridine synthase D 3464466 rluD 3124797 rluD Photobacterium profundum SS9 23S rRNA pseudouridine synthase D YP_131151.1 3463492 R 298386 CDS YP_131152.1 54310132 3122060 3464634..3465362 1 NC_006370.1 hypothetical protein 3465362 3122060 PBPRA3022 Photobacterium profundum SS9 hypothetical protein YP_131152.1 3464634 D 298386 CDS YP_131153.1 54310133 3123508 3465778..3466128 1 NC_006370.1 sigma-54 modulation protein 3466128 3123508 PBPRA3023 Photobacterium profundum SS9 sigma-54 modulation protein YP_131153.1 3465778 D 298386 CDS YP_131154.1 54310134 3125431 3466374..3467549 1 NC_006370.1 chorismate mutase/prephenate dehydratase 3467549 3125431 PBPRA3024 Photobacterium profundum SS9 chorismate mutase/prephenate dehydratase YP_131154.1 3466374 D 298386 CDS YP_131155.1 54310135 3123212 complement(3467617..3468744) 1 NC_006370.1 catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 3468744 tyrA 3123212 tyrA Photobacterium profundum SS9 bifunctional chorismate mutase/prephenate dehydrogenase YP_131155.1 3467617 R 298386 CDS YP_131156.2 229557964 3125033 complement(3468907..3469980) 1 NC_006370.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 3469980 3125033 PBPRA3026 Photobacterium profundum SS9 phospho-2-dehydro-3-deoxyheptonate aldolase YP_131156.2 3468907 R 298386 CDS YP_131157.1 54310137 3122331 3470225..3471943 1 NC_006370.1 cell autolysis regulator LytS 3471943 3122331 PBPRA3027 Photobacterium profundum SS9 cell autolysis regulator LytS YP_131157.1 3470225 D 298386 CDS YP_131158.1 54310138 3125282 complement(3472354..3473061) 1 NC_006370.1 DNA-binding protein 3473061 3125282 PBPRA3028 Photobacterium profundum SS9 DNA-binding protein YP_131158.1 3472354 R 298386 CDS YP_131159.1 54310139 3123018 3473297..3473809 1 NC_006370.1 hypothetical protein 3473809 3123018 PBPRA3029 Photobacterium profundum SS9 hypothetical protein YP_131159.1 3473297 D 298386 CDS YP_131160.1 54310140 3124842 3473763..3474221 1 NC_006370.1 hypothetical protein 3474221 3124842 PBPRA3030 Photobacterium profundum SS9 hypothetical protein YP_131160.1 3473763 D 298386 CDS YP_131161.1 54310141 3122224 3474238..3474618 1 NC_006370.1 YjgF family translation initiation inhibitor 3474618 3122224 PBPRA3031 Photobacterium profundum SS9 YjgF family translation initiation inhibitor YP_131161.1 3474238 D 298386 CDS YP_131162.1 54310142 3122669 3474679..3475971 1 NC_006370.1 hypothetical protein 3475971 3122669 PBPRA3032 Photobacterium profundum SS9 hypothetical protein YP_131162.1 3474679 D 298386 CDS YP_131163.1 54310143 3124191 3476205..3476609 1 NC_006370.1 transposase 3476609 3124191 PBPRA3033 Photobacterium profundum SS9 transposase YP_131163.1 3476205 D 298386 CDS YP_131164.1 54310144 3123299 3476795..3478267 1 NC_006370.1 hypothetical protein 3478267 3123299 PBPRA3034 Photobacterium profundum SS9 hypothetical protein YP_131164.1 3476795 D 298386 CDS YP_131165.1 54310145 3123417 3478626..3479339 1 NC_006370.1 unknown function; when overproduced it confers drug-resistance; two-component response-regulatory protein YehT 3479339 3123417 PBPRA3035 Photobacterium profundum SS9 two-component response-regulatory protein YehT YP_131165.1 3478626 D 298386 CDS YP_131166.1 54310146 3124454 complement(3479660..3480046) 1 NC_006370.1 hypothetical protein 3480046 3124454 PBPRA3036 Photobacterium profundum SS9 hypothetical protein YP_131166.1 3479660 R 298386 CDS YP_131167.1 54310147 3123419 3480535..3482061 1 NC_006370.1 carbon starvation protein A 3482061 3123419 PBPRA3037 Photobacterium profundum SS9 carbon starvation protein A YP_131167.1 3480535 D 298386 CDS YP_131168.1 54310148 3123156 complement(3482462..3482821) 1 NC_006370.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 3482821 rplS 3123156 rplS Photobacterium profundum SS9 50S ribosomal protein L19 YP_131168.1 3482462 R 298386 CDS YP_131169.1 54310149 3124579 complement(3482852..3483601) 1 NC_006370.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 3483601 trmD 3124579 trmD Photobacterium profundum SS9 tRNA (guanine-N(1)-)-methyltransferase YP_131169.1 3482852 R 298386 CDS YP_131170.1 54310150 3125346 complement(3483628..3484161) 1 NC_006370.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 3484161 rimM 3125346 rimM Photobacterium profundum SS9 16S rRNA-processing protein RimM YP_131170.1 3483628 R 298386 CDS YP_131171.1 54310151 3125441 complement(3484191..3484442) 1 NC_006370.1 ribosomal protein S16 3484442 3125441 PBPRA3041 Photobacterium profundum SS9 ribosomal protein S16 YP_131171.1 3484191 R 298386 CDS YP_131172.1 54310152 3123316 complement(3484622..3485989) 1 NC_006370.1 signal recognition particle protein 3485989 3123316 PBPRA3042 Photobacterium profundum SS9 signal recognition particle protein YP_131172.1 3484622 R 298386 CDS YP_131173.1 54310153 3124913 3486160..3486936 1 NC_006370.1 hypothetical protein 3486936 3124913 PBPRA3043 Photobacterium profundum SS9 hypothetical protein YP_131173.1 3486160 D 298386 CDS YP_131174.1 54310154 3125040 3487023..3488300 1 NC_006370.1 Mg2+ and Co2+ transporter CorB 3488300 3125040 PBPRA3044 Photobacterium profundum SS9 Mg2+ and Co2+ transporter CorB YP_131174.1 3487023 D 298386 CDS YP_131175.1 54310155 3125199 complement(3488390..3488917) 1 NC_006370.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 3488917 3125199 PBPRA3045 Photobacterium profundum SS9 S-ribosylhomocysteinase YP_131175.1 3488390 R 298386 CDS YP_131176.1 54310156 3124943 complement(3488978..3489619) 1 NC_006370.1 hypothetical protein 3489619 3124943 PBPRA3046 Photobacterium profundum SS9 hypothetical protein YP_131176.1 3488978 R 298386 CDS YP_131177.1 54310157 3125122 complement(3489785..3491359) 1 NC_006370.1 involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 3491359 3125122 PBPRA3047 Photobacterium profundum SS9 glutamate--cysteine ligase YP_131177.1 3489785 R 298386 CDS YP_131178.1 54310158 3125439 complement(3491505..3494351) 1 NC_006370.1 insulinase family protease 3494351 3125439 PBPRA3048 Photobacterium profundum SS9 insulinase family protease YP_131178.1 3491505 R 298386 CDS YP_131179.1 54310159 3122837 complement(3494363..3494794) 1 NC_006370.1 hypothetical protein 3494794 3122837 PBPRA3049 Photobacterium profundum SS9 hypothetical protein YP_131179.1 3494363 R 298386 CDS YP_131180.1 54310160 3123268 complement(3495215..3496345) 1 NC_006370.1 oxaloacetate decarboxylase, beta subunit 3496345 3123268 PBPRA3050 Photobacterium profundum SS9 oxaloacetate decarboxylase, beta subunit YP_131180.1 3495215 R 298386 CDS YP_131181.1 54310161 3123927 complement(3496355..3498130) 1 NC_006370.1 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 3498130 3123927 PBPRA3051 Photobacterium profundum SS9 oxaloacetate decarboxylase YP_131181.1 3496355 R 298386 CDS YP_131182.1 54310162 3124548 complement(3498174..3498422) 1 NC_006370.1 oxaloacetate decarboxylase subunit gamma 3498422 3124548 PBPRA3052 Photobacterium profundum SS9 oxaloacetate decarboxylase subunit gamma YP_131182.1 3498174 R 298386 CDS YP_131183.1 54310163 3125175 complement(3500838..3501035) 1 NC_006370.1 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 3501035 3125175 PBPRA3065 Photobacterium profundum SS9 carbon storage regulator YP_131183.1 3500838 R 298386 CDS YP_131184.1 54310164 3123648 complement(3501121..3502299) 1 NC_006370.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; aspartate kinase 3502299 3123648 PBPRA3066 Photobacterium profundum SS9 aspartate kinase YP_131184.1 3501121 R 298386 CDS YP_131185.1 54310165 3124267 complement(3502316..3505036) 1 NC_006370.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 3505036 alaS 3124267 alaS Photobacterium profundum SS9 alanyl-tRNA synthetase YP_131185.1 3502316 R 298386 CDS YP_131186.1 54310166 3123155 complement(3505387..3506457) 1 NC_006370.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 3506457 recA 3123155 recA Photobacterium profundum SS9 recombinase A YP_131186.1 3505387 R 298386 CDS YP_131187.1 54310167 3123716 complement(3506571..3507062) 1 NC_006370.1 CinA-related protein 3507062 3123716 PBPRA3069 Photobacterium profundum SS9 CinA-related protein YP_131187.1 3506571 R 298386 CDS YP_131188.1 54310168 3122171 3507285..3509855 1 NC_006370.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 3509855 3122171 PBPRA3070 Photobacterium profundum SS9 DNA mismatch repair protein MutS YP_131188.1 3507285 D 298386 CDS YP_131189.1 54310169 3123121 complement(3509986..3511014) 1 NC_006370.1 RNA polymerase sigma-38 factor 3511014 3123121 PBPRA3071 Photobacterium profundum SS9 RNA polymerase sigma-38 factor YP_131189.1 3509986 R 298386 CDS YP_131190.1 54310170 3125368 complement(3511040..3511948) 1 NC_006370.1 lipoprotein NlpD 3511948 3125368 PBPRA3072 Photobacterium profundum SS9 lipoprotein NlpD YP_131190.1 3511040 R 298386 CDS YP_131191.1 54310171 3123849 complement(3511965..3512594) 1 NC_006370.1 catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 3512594 pcm 3123849 pcm Photobacterium profundum SS9 protein-L-isoaspartate O-methyltransferase YP_131191.1 3511965 R 298386 CDS YP_131192.1 54310172 3125414 complement(3512597..3513370) 1 NC_006370.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 3513370 surE 3125414 surE Photobacterium profundum SS9 stationary phase survival protein SurE YP_131192.1 3512597 R 298386 CDS YP_131193.1 54310173 3125315 complement(3513327..3514397) 1 NC_006370.1 catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 3514397 truD 3125315 truD Photobacterium profundum SS9 tRNA pseudouridine synthase D YP_131193.1 3513327 R 298386 CDS YP_131194.1 54310174 3123324 complement(3514411..3514884) 1 NC_006370.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 3514884 ispF 3123324 ispF Photobacterium profundum SS9 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_131194.1 3514411 R 298386 CDS YP_131195.1 54310175 3124816 complement(3514890..3515594) 1 NC_006370.1 2-C-methyl-D-erythritol 4-phosphatecytidylyltransferase 3515594 3124816 PBPRA3077 Photobacterium profundum SS9 2-C-methyl-D-erythritol 4-phosphatecytidylyltransferase YP_131195.1 3514890 R 298386 CDS YP_131196.1 54310176 3125195 complement(3515628..3515915) 1 NC_006370.1 hypothetical protein 3515915 3125195 PBPRA3078 Photobacterium profundum SS9 hypothetical protein YP_131196.1 3515628 R 298386 CDS YP_131197.1 54310177 3124764 complement(3516160..3517461) 1 NC_006370.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 3517461 eno 3124764 eno Photobacterium profundum SS9 phosphopyruvate hydratase YP_131197.1 3516160 R 298386 CDS YP_131198.1 54310178 3124318 complement(3517545..3519182) 1 NC_006370.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 3519182 pyrG 3124318 pyrG Photobacterium profundum SS9 CTP synthetase YP_131198.1 3517545 R 298386 CDS YP_131199.1 54310179 3122587 complement(3519416..3520234) 1 NC_006370.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 3520234 mazG 3122587 mazG Photobacterium profundum SS9 nucleoside triphosphate pyrophosphohydrolase YP_131199.1 3519416 R 298386 CDS YP_131200.1 54310180 3123892 complement(3520367..3522598) 1 NC_006370.1 GTP pyrophosphokinase 3522598 3123892 PBPRA3082 Photobacterium profundum SS9 GTP pyrophosphokinase YP_131200.1 3520367 R 298386 CDS YP_131201.1 54310181 3123178 complement(3522640..3524055) 1 NC_006370.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 3524055 rumA 3123178 rumA Photobacterium profundum SS9 23S rRNA 5-methyluridine methyltransferase YP_131201.1 3522640 R 298386 CDS YP_131202.2 161936294 3125365 3524161..3526944 1 NC_006370.1 part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA 3526944 3125365 PBPRA3084 Photobacterium profundum SS9 hybrid sensory histidine kinase BarA YP_131202.2 3524161 D 298386 CDS YP_131203.1 54310183 3123579 complement(3527086..3527466) 1 NC_006370.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 3527466 acpS 3123579 acpS Photobacterium profundum SS9 4'-phosphopantetheinyl transferase YP_131203.1 3527086 R 298386 CDS YP_131204.1 54310184 3123572 complement(3527466..3528197) 1 NC_006370.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 3528197 3123572 PBPRA3086 Photobacterium profundum SS9 pyridoxine 5'-phosphate synthase YP_131204.1 3527466 R 298386 CDS YP_131205.1 54310185 3122510 complement(3528194..3528904) 1 NC_006370.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 3528904 recO 3122510 recO Photobacterium profundum SS9 DNA repair protein RecO YP_131205.1 3528194 R 298386 CDS YP_131206.1 54310186 3122041 complement(3528913..3529818) 1 NC_006370.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 3529818 era 3122041 era Photobacterium profundum SS9 GTP-binding protein Era YP_131206.1 3528913 R 298386 CDS YP_131207.1 54310187 3124081 complement(3529815..3530489) 1 NC_006370.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 3530489 rnc 3124081 rnc Photobacterium profundum SS9 ribonuclease III YP_131207.1 3529815 R 298386 CDS YP_131208.1 54310188 3123481 complement(3530500..3531399) 1 NC_006370.1 signal peptidase I 3531399 3123481 PBPRA3090 Photobacterium profundum SS9 signal peptidase I YP_131208.1 3530500 R 298386 CDS YP_131209.1 54310189 3122026 complement(3531552..3533345) 1 NC_006370.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 3533345 3122026 PBPRA3091 Photobacterium profundum SS9 GTP-binding protein LepA YP_131209.1 3531552 R 298386 CDS YP_131210.1 54310190 3123171 complement(3533422..3533919) 1 NC_006370.1 hypothetical protein 3533919 3123171 PBPRA3092 Photobacterium profundum SS9 hypothetical protein YP_131210.1 3533422 R 298386 CDS YP_131211.1 54310191 3124464 complement(3533916..3534911) 1 NC_006370.1 periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; periplasmic negative regulator of sigmaE 3534911 rseB 3124464 rseB Photobacterium profundum SS9 periplasmic negative regulator of sigmaE YP_131211.1 3533916 R 298386 CDS YP_131212.1 54310192 3125136 complement(3534911..3535609) 1 NC_006370.1 sigma-E factor negative regulatory protein RseA 3535609 3125136 PBPRA3094 Photobacterium profundum SS9 sigma-E factor negative regulatory protein RseA YP_131212.1 3534911 R 298386 CDS YP_131213.1 54310193 3124802 complement(3535634..3536212) 1 NC_006370.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 3536212 3124802 PBPRA3095 Photobacterium profundum SS9 RNA polymerase sigma factor RpoE YP_131213.1 3535634 R 298386 CDS YP_131214.1 54310194 3125112 3536325..3536573 1 NC_006370.1 hypothetical protein 3536573 3125112 PBPRA3096 Photobacterium profundum SS9 hypothetical protein YP_131214.1 3536325 D 298386 CDS YP_131215.1 54310195 3124587 3537010..3538674 1 NC_006370.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 3538674 3124587 PBPRA3097 Photobacterium profundum SS9 L-aspartate oxidase YP_131215.1 3537010 D 298386 CDS YP_131216.1 54310196 3124408 complement(3538789..3539208) 1 NC_006370.1 cell shape-determining protein 3539208 3124408 PBPRA3098 Photobacterium profundum SS9 cell shape-determining protein YP_131216.1 3538789 R 298386 CDS YP_131217.1 54310197 3123700 complement(3539177..3539443) 1 NC_006370.1 hypothetical protein 3539443 3123700 PBPRA3099 Photobacterium profundum SS9 hypothetical protein YP_131217.1 3539177 R 298386 CDS YP_131218.1 54310198 3123712 3539793..3540782 1 NC_006370.1 hypothetical protein 3540782 3123712 PBPRA3100 Photobacterium profundum SS9 hypothetical protein YP_131218.1 3539793 D 298386 CDS YP_131219.1 54310199 3124940 3540784..3541245 1 NC_006370.1 hypothetical protein 3541245 3124940 PBPRA3101 Photobacterium profundum SS9 hypothetical protein YP_131219.1 3540784 D 298386 CDS YP_131220.1 54310200 3124456 3541666..3543546 1 NC_006370.1 hypothetical protein 3543546 3124456 PBPRA3102 Photobacterium profundum SS9 hypothetical protein YP_131220.1 3541666 D 298386 CDS YP_131221.1 54310201 3124295 3543558..3544256 1 NC_006370.1 hypothetical protein 3544256 3124295 PBPRA3103 Photobacterium profundum SS9 hypothetical protein YP_131221.1 3543558 D 298386 CDS YP_131222.1 54310202 3123602 3544253..3544867 1 NC_006370.1 hypothetical protein 3544867 3123602 PBPRA3104 Photobacterium profundum SS9 hypothetical protein YP_131222.1 3544253 D 298386 CDS YP_131223.1 54310203 3125370 3545046..3545372 1 NC_006370.1 hypothetical protein 3545372 3125370 PBPRA3105 Photobacterium profundum SS9 hypothetical protein YP_131223.1 3545046 D 298386 CDS YP_131224.1 54310204 3122559 3545450..3546730 1 NC_006370.1 hypothetical protein 3546730 3122559 PBPRA3106 Photobacterium profundum SS9 hypothetical protein YP_131224.1 3545450 D 298386 CDS YP_131225.1 54310205 3123908 3546745..3547068 1 NC_006370.1 hypothetical protein 3547068 3123908 PBPRA3107 Photobacterium profundum SS9 hypothetical protein YP_131225.1 3546745 D 298386 CDS YP_131226.1 54310206 3122973 3547407..3547673 1 NC_006370.1 hypothetical protein 3547673 3122973 PBPRA3108 Photobacterium profundum SS9 hypothetical protein YP_131226.1 3547407 D 298386 CDS YP_131227.1 54310207 3124272 3549022..3549459 1 NC_006370.1 hypothetical protein 3549459 3124272 PBPRA3110 Photobacterium profundum SS9 hypothetical protein YP_131227.1 3549022 D 298386 CDS YP_131228.1 54310208 3122910 3549604..3550563 1 NC_006370.1 LysR family transcriptional regulator 3550563 3122910 PBPRA3111 Photobacterium profundum SS9 LysR family transcriptional regulator YP_131228.1 3549604 D 298386 CDS YP_131229.1 54310209 3122985 complement(3550708..3550902) 1 NC_006370.1 hypothetical protein 3550902 3122985 PBPRA3112 Photobacterium profundum SS9 hypothetical protein YP_131229.1 3550708 R 298386 CDS YP_131230.1 54310210 3122931 complement(3550899..3551375) 1 NC_006370.1 hypothetical protein 3551375 3122931 PBPRA3113 Photobacterium profundum SS9 hypothetical protein YP_131230.1 3550899 R 298386 CDS YP_131231.1 54310211 3124059 complement(3551377..3551754) 1 NC_006370.1 hypothetical protein 3551754 3124059 PBPRA3114 Photobacterium profundum SS9 hypothetical protein YP_131231.1 3551377 R 298386 CDS YP_131232.1 54310212 3123861 3552240..3552443 1 NC_006370.1 hypothetical protein 3552443 3123861 PBPRA3115 Photobacterium profundum SS9 hypothetical protein YP_131232.1 3552240 D 298386 CDS YP_131233.1 54310213 3124616 complement(3552560..3552952) 1 NC_006370.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 3552952 3124616 PBPRA3116 Photobacterium profundum SS9 glycine cleavage system protein H YP_131233.1 3552560 R 298386 CDS YP_131234.1 54310214 3123803 complement(3553238..3554446) 1 NC_006370.1 catalyzes the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone from 2-octaprenyl-6-methoxyphenol; 2-octaprenyl-6-methoxyphenol hydroxylase 3554446 3123803 PBPRA3117 Photobacterium profundum SS9 2-octaprenyl-6-methoxyphenol hydroxylase YP_131234.1 3553238 R 298386 CDS YP_131235.1 54310215 3125109 complement(3554443..3555651) 1 NC_006370.1 Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase 3555651 3125109 PBPRA3118 Photobacterium profundum SS9 2-octaprenyl-6-methoxyphenyl hydroxylase YP_131235.1 3554443 R 298386 CDS YP_131236.1 54310216 3122863 complement(3555731..3556399) 1 NC_006370.1 the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein 3556399 3122863 PBPRA3119 Photobacterium profundum SS9 hypothetical protein YP_131236.1 3555731 R 298386 CDS YP_131237.1 54310217 3124507 3556674..3556976 1 NC_006370.1 hypothetical protein 3556976 3124507 PBPRA3120 Photobacterium profundum SS9 hypothetical protein YP_131237.1 3556674 D 298386 CDS YP_131238.1 54310218 3122917 3557263..3557868 1 NC_006370.1 5-formyltetrahydrofolate cyclo-ligase 3557868 3122917 PBPRA3121 Photobacterium profundum SS9 5-formyltetrahydrofolate cyclo-ligase YP_131238.1 3557263 D 298386 CDS YP_131239.1 54310219 3125286 3558149..3558808 1 NC_006370.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 3558808 3125286 PBPRA3122 Photobacterium profundum SS9 ribose-5-phosphate isomerase A YP_131239.1 3558149 D 298386 CDS YP_131240.1 54310220 3124847 3559070..3559666 1 NC_006370.1 phosphoglycerate dehydrogenase 3559666 3124847 PBPRA3123 Photobacterium profundum SS9 phosphoglycerate dehydrogenase YP_131240.1 3559070 D 298386 CDS YP_131241.1 54310221 3123263 3559632..3560300 1 NC_006370.1 D-3-phosphoglycerate dehydrogenase 3560300 3123263 PBPRA3124 Photobacterium profundum SS9 D-3-phosphoglycerate dehydrogenase YP_131241.1 3559632 D 298386 CDS YP_131242.1 54310222 3123183 complement(3560361..3561062) 1 NC_006370.1 hypothetical protein 3561062 3123183 PBPRA3125 Photobacterium profundum SS9 hypothetical protein YP_131242.1 3560361 R 298386 CDS YP_131243.1 54310223 3125333 complement(3561247..3562149) 1 NC_006370.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 3562149 3125333 PBPRA3126 Photobacterium profundum SS9 chromosome replication initiation inhibitor protein YP_131243.1 3561247 R 298386 CDS YP_131244.1 54310224 3122475 3562303..3562938 1 NC_006370.1 lysine efflux permease 3562938 3122475 PBPRA3127 Photobacterium profundum SS9 lysine efflux permease YP_131244.1 3562303 D 298386 CDS YP_131245.1 54310225 3123926 3562925..3563455 1 NC_006370.1 DNA-binding protein 3563455 3123926 PBPRA3128 Photobacterium profundum SS9 DNA-binding protein YP_131245.1 3562925 D 298386 CDS YP_131246.1 54310226 3122675 complement(3563549..3564433) 1 NC_006370.1 hypothetical protein 3564433 3122675 PBPRA3129 Photobacterium profundum SS9 hypothetical protein YP_131246.1 3563549 R 298386 CDS YP_131247.1 54310227 3123169 complement(3564781..3565857) 1 NC_006370.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 3565857 3123169 PBPRA3130 Photobacterium profundum SS9 fructose-bisphosphate aldolase YP_131247.1 3564781 R 298386 CDS YP_131248.1 54310228 3124532 complement(3566003..3567181) 1 NC_006370.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 3567181 pgk 3124532 pgk Photobacterium profundum SS9 phosphoglycerate kinase YP_131248.1 3566003 R 298386 CDS YP_131249.2 161936293 3123661 complement(3567239..3568321) 1 NC_006370.1 NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase 3568321 3123661 PBPRA3132 Photobacterium profundum SS9 erythrose 4-phosphate dehydrogenase YP_131249.2 3567239 R 298386 CDS YP_131250.1 54310230 3124478 complement(3568597..3570609) 1 NC_006370.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 3570609 3124478 PBPRA3133 Photobacterium profundum SS9 transketolase YP_131250.1 3568597 R 298386 CDS YP_131251.1 54310231 3124973 3571009..3572163 1 NC_006370.1 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 3572163 3124973 PBPRA3134 Photobacterium profundum SS9 S-adenosylmethionine synthetase YP_131251.1 3571009 D 298386 CDS YP_131252.1 54310232 3123108 3572274..3572756 1 NC_006370.1 hypothetical protein 3572756 3123108 PBPRA3135 Photobacterium profundum SS9 hypothetical protein YP_131252.1 3572274 D 298386 CDS YP_131253.1 54310233 3123271 3572931..3573674 1 NC_006370.1 extracellular deoxyribonucleaseprecursor 3573674 3123271 PBPRA3136 Photobacterium profundum SS9 extracellular deoxyribonucleaseprecursor YP_131253.1 3572931 D 298386 CDS YP_131254.2 161936292 3122941 3573880..3574611 1 NC_006370.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 3574611 3122941 PBPRA3137 Photobacterium profundum SS9 16S ribosomal RNA methyltransferase RsmE YP_131254.2 3573880 D 298386 CDS YP_131255.1 54310235 3124987 3574641..3575588 1 NC_006370.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 3575588 3124987 PBPRA3138 Photobacterium profundum SS9 glutathione synthetase YP_131255.1 3574641 D 298386 CDS YP_131256.1 54310236 3123721 3576288..3576749 1 NC_006370.1 hypothetical protein 3576749 3123721 PBPRA3139 Photobacterium profundum SS9 hypothetical protein YP_131256.1 3576288 D 298386 CDS YP_131257.1 54310237 3123247 3576746..3577174 1 NC_006370.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 3577174 3123247 PBPRA3140 Photobacterium profundum SS9 Holliday junction resolvase-like protein YP_131257.1 3576746 D 298386 CDS YP_131258.1 54310238 3122653 complement(3577569..3578678) 1 NC_006370.1 twitching motility protein PilT 3578678 3122653 PBPRA3141 Photobacterium profundum SS9 twitching motility protein PilT YP_131258.1 3577569 R 298386 CDS YP_131259.1 54310239 3122427 complement(3578747..3579784) 1 NC_006370.1 twitching motility protein PilT 3579784 3122427 PBPRA3142 Photobacterium profundum SS9 twitching motility protein PilT YP_131259.1 3578747 R 298386 CDS YP_131260.1 54310240 3124570 3579774..3580508 1 NC_006370.1 TIM-barrel fold family protein 3580508 3124570 PBPRA3143 Photobacterium profundum SS9 TIM-barrel fold family protein YP_131260.1 3579774 D 298386 CDS YP_131261.1 54310241 3124827 3580558..3581376 1 NC_006370.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 3581376 3124827 PBPRA3144 Photobacterium profundum SS9 pyrroline-5-carboxylate reductase YP_131261.1 3580558 D 298386 CDS YP_131262.1 54310242 3124641 3581386..3581748 1 NC_006370.1 hypothetical protein 3581748 3124641 PBPRA3145 Photobacterium profundum SS9 hypothetical protein YP_131262.1 3581386 D 298386 CDS YP_131263.1 54310243 3124583 3581926..3582231 1 NC_006370.1 hypothetical protein 3582231 3124583 PBPRA3146 Photobacterium profundum SS9 hypothetical protein YP_131263.1 3581926 D 298386 CDS YP_131264.1 54310244 3124770 3582322..3582750 1 NC_006370.1 hypothetical protein 3582750 3124770 PBPRA3147 Photobacterium profundum SS9 hypothetical protein YP_131264.1 3582322 D 298386 CDS YP_131265.2 161936291 3124833 3583120..3583713 1 NC_006370.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 3583713 3124833 PBPRA3148 Photobacterium profundum SS9 deoxyribonucleotide triphosphate pyrophosphatase YP_131265.2 3583120 D 298386 CDS YP_131266.1 54310246 3124928 3583713..3584867 1 NC_006370.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 3584867 3124928 PBPRA3149 Photobacterium profundum SS9 coproporphyrinogen III oxidase YP_131266.1 3583713 D 298386 CDS YP_131267.1 54310247 3122462 complement(3584948..3585358) 1 NC_006370.1 hypothetical protein 3585358 3122462 PBPRA3150 Photobacterium profundum SS9 hypothetical protein YP_131267.1 3584948 R 298386 CDS YP_131268.1 54310248 3125380 complement(3585407..3586327) 1 NC_006370.1 catalyzes the formation of glutamate from glutamine; glutaminase 3586327 3125380 PBPRA3151 Photobacterium profundum SS9 glutaminase YP_131268.1 3585407 R 298386 CDS YP_131269.1 54310249 3125253 complement(3586486..3587223) 1 NC_006370.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 3587223 trmB 3125253 trmB Photobacterium profundum SS9 tRNA (guanine-N(7)-)-methyltransferase YP_131269.1 3586486 R 298386 CDS YP_131270.1 54310250 3124630 complement(3587271..3587552) 1 NC_006370.1 hypothetical protein 3587552 3124630 PBPRA3153 Photobacterium profundum SS9 hypothetical protein YP_131270.1 3587271 R 298386 CDS YP_131271.1 54310251 3123256 3587579..3588538 1 NC_006370.1 A/G-specific adenine glycosylase 3588538 3123256 PBPRA3154 Photobacterium profundum SS9 A/G-specific adenine glycosylase YP_131271.1 3587579 D 298386 CDS YP_131272.1 54310252 3125091 3588677..3588949 1 NC_006370.1 hypothetical protein 3588949 3125091 PBPRA3155 Photobacterium profundum SS9 hypothetical protein YP_131272.1 3588677 D 298386 CDS YP_131273.1 54310253 3124417 3589041..3590204 1 NC_006370.1 membrane-bound lytic mureintransglycosylase C 3590204 3124417 PBPRA3156 Photobacterium profundum SS9 membrane-bound lytic mureintransglycosylase C YP_131273.1 3589041 D 298386 CDS YP_131274.1 54310254 3123840 3591849..3593105 1 NC_006370.1 hypothetical protein 3593105 3123840 PBPRA3166 Photobacterium profundum SS9 hypothetical protein YP_131274.1 3591849 D 298386 CDS YP_131275.1 54310255 3122686 complement(3593196..3595619) 1 NC_006370.1 penicillin-binding protein 1B 3595619 3122686 PBPRA3167 Photobacterium profundum SS9 penicillin-binding protein 1B YP_131275.1 3593196 R 298386 CDS YP_131276.1 54310256 3122068 complement(3595813..3598323) 1 NC_006370.1 similar in sequence to the ATP-dependent RNA helicase HrpA; ATP-dependent RNA helicase HrpB 3598323 3122068 PBPRA3168 Photobacterium profundum SS9 ATP-dependent RNA helicase HrpB YP_131276.1 3595813 R 298386 CDS YP_131277.1 54310257 3122242 3598420..3599049 1 NC_006370.1 hypothetical protein 3599049 3122242 PBPRA3169 Photobacterium profundum SS9 hypothetical protein YP_131277.1 3598420 D 298386 CDS YP_131278.1 54310258 3123556 3599096..3599800 1 NC_006370.1 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 3599800 3123556 PBPRA3170 Photobacterium profundum SS9 sugar fermentation stimulation protein A YP_131278.1 3599096 D 298386 CDS YP_131279.1 54310259 3122509 3599937..3600386 1 NC_006370.1 DnaK suppressor protein 3600386 3122509 PBPRA3171 Photobacterium profundum SS9 DnaK suppressor protein YP_131279.1 3599937 D 298386 CDS YP_131280.1 54310260 3124951 3600511..3601443 1 NC_006370.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase 3601443 3124951 PBPRA3172 Photobacterium profundum SS9 glutamyl-Q tRNA(Asp) synthetase YP_131280.1 3600511 D 298386 CDS YP_131281.1 54310261 3125306 3601619..3602968 1 NC_006370.1 polyA polymerase 3602968 3125306 PBPRA3173 Photobacterium profundum SS9 polyA polymerase YP_131281.1 3601619 D 298386 CDS YP_131282.1 54310262 3122288 3602965..3603450 1 NC_006370.1 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase 3603450 3122288 PBPRA3174 Photobacterium profundum SS9 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase YP_131282.1 3602965 D 298386 CDS YP_131283.1 54310263 3122934 3603478..3604272 1 NC_006370.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 3604272 panB 3122934 panB Photobacterium profundum SS9 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_131283.1 3603478 D 298386 CDS YP_131284.1 54310264 3122642 3604282..3605169 1 NC_006370.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 3605169 panC 3122642 panC Photobacterium profundum SS9 pantoate--beta-alanine ligase YP_131284.1 3604282 D 298386 CDS YP_131285.1 54310265 3124714 complement(3605274..3606044) 1 NC_006370.1 permease 3606044 3124714 PBPRA3177 Photobacterium profundum SS9 permease YP_131285.1 3605274 R 298386 CDS YP_131286.1 54310266 3123708 complement(3606041..3606979) 1 NC_006370.1 ABC transporter ATP-binding protein 3606979 3123708 PBPRA3178 Photobacterium profundum SS9 ABC transporter ATP-binding protein YP_131286.1 3606041 R 298386 CDS YP_131287.1 54310267 3122394 3607107..3607763 1 NC_006370.1 carbonic anhydrase 3607763 3122394 PBPRA3179 Photobacterium profundum SS9 carbonic anhydrase YP_131287.1 3607107 D 298386 CDS YP_131288.2 161936290 3122836 complement(3607879..3608412) 1 NC_006370.1 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase 3608412 3122836 PBPRA3180 Photobacterium profundum SS9 hypoxanthine-guanine phosphoribosyltransferase YP_131288.2 3607879 R 298386 CDS YP_131289.1 54310269 3122330 3608641..3609249 1 NC_006370.1 hypothetical protein 3609249 3122330 PBPRA3181 Photobacterium profundum SS9 hypothetical protein YP_131289.1 3608641 D 298386 CDS YP_131290.1 54310270 3122257 complement(3609345..3610385) 1 NC_006370.1 iron(III) ABC transporter, ATP-binding protein 3610385 3122257 PBPRA3182 Photobacterium profundum SS9 iron(III) ABC transporter, ATP-binding protein YP_131290.1 3609345 R 298386 CDS YP_131291.1 54310271 3121950 complement(3610385..3612013) 1 NC_006370.1 iron(III) ABC transporter, permease protein 3612013 3121950 PBPRA3183 Photobacterium profundum SS9 iron(III) ABC transporter, permease protein YP_131291.1 3610385 R 298386 CDS YP_131292.1 54310272 3123646 complement(3612210..3613268) 1 NC_006370.1 ABC transporter, periplasmic iron-compound-binding protein 3613268 3123646 PBPRA3184 Photobacterium profundum SS9 ABC transporter, periplasmic iron-compound-binding protein YP_131292.1 3612210 R 298386 CDS YP_131293.1 54310273 3122237 complement(3613428..3614657) 1 NC_006370.1 ammonium transporter 3614657 3122237 PBPRA3185 Photobacterium profundum SS9 ammonium transporter YP_131293.1 3613428 R 298386 CDS YP_131294.1 54310274 3123014 complement(3614711..3615049) 1 NC_006370.1 nitrogen regulatory protein P-II 3615049 3123014 PBPRA3186 Photobacterium profundum SS9 nitrogen regulatory protein P-II YP_131294.1 3614711 R 298386 CDS YP_131295.1 54310275 3122166 complement(3615238..3615606) 1 NC_006370.1 hypothetical protein 3615606 3122166 PBPRA3187 Photobacterium profundum SS9 hypothetical protein YP_131295.1 3615238 R 298386 CDS YP_131296.1 54310276 3122643 3615681..3616838 1 NC_006370.1 sugar diacid utilization regulator 3616838 3122643 PBPRA3188 Photobacterium profundum SS9 sugar diacid utilization regulator YP_131296.1 3615681 D 298386 CDS YP_131297.1 54310277 3123507 3617018..3618283 1 NC_006370.1 permease 3618283 3123507 PBPRA3189 Photobacterium profundum SS9 permease YP_131297.1 3617018 D 298386 CDS YP_131298.1 54310278 3121989 3618296..3619432 1 NC_006370.1 glycerate kinase 3619432 3121989 PBPRA3190 Photobacterium profundum SS9 glycerate kinase YP_131298.1 3618296 D 298386 CDS YP_131299.1 54310279 3123564 complement(3619602..3622199) 1 NC_006370.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 3622199 3123564 PBPRA3191 Photobacterium profundum SS9 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_131299.1 3619602 R 298386 CDS YP_131300.1 54310280 3122816 complement(3622437..3624767) 1 NC_006370.1 hypothetical protein 3624767 3122816 PBPRA3192 Photobacterium profundum SS9 hypothetical protein YP_131300.1 3622437 R 298386 CDS YP_131301.1 54310281 3122593 3624832..3626748 1 NC_006370.1 methyl-accepting chemotaxis protein 3626748 3122593 PBPRA3193 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_131301.1 3624832 D 298386 CDS YP_131302.1 54310282 3122078 complement(3626827..3628269) 1 NC_006370.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 3628269 3122078 PBPRA3194 Photobacterium profundum SS9 dihydrolipoamide dehydrogenase YP_131302.1 3626827 R 298386 CDS YP_131303.2 161936289 3121962 complement(3628517..3630409) 1 NC_006370.1 E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; dihydrolipoamide acetyltransferase 3630409 aceF 3121962 aceF Photobacterium profundum SS9 dihydrolipoamide acetyltransferase YP_131303.2 3628517 R 298386 CDS YP_131304.1 54310284 3122871 complement(3630423..3633089) 1 NC_006370.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 3633089 aceE 3122871 aceE Photobacterium profundum SS9 pyruvate dehydrogenase subunit E1 YP_131304.1 3630423 R 298386 CDS YP_131305.1 54310285 3125491 complement(3633170..3633943) 1 NC_006370.1 activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 3633943 pdhR 3125491 pdhR Photobacterium profundum SS9 transcriptional regulator PdhR YP_131305.1 3633170 R 298386 CDS YP_131306.1 54310286 3121986 complement(3634275..3634832) 1 NC_006370.1 N-acetyl-anhydromuranmyl-L-alanine amidase 3634832 3121986 PBPRA3198 Photobacterium profundum SS9 N-acetyl-anhydromuranmyl-L-alanine amidase YP_131306.1 3634275 R 298386 CDS YP_131307.1 54310287 3122434 3634948..3635898 1 NC_006370.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; quinolinate phosphoribosyltransferase 3635898 3122434 PBPRA3199 Photobacterium profundum SS9 quinolinate phosphoribosyltransferase YP_131307.1 3634948 D 298386 CDS YP_131308.1 54310288 3124839 3636200..3636607 1 NC_006370.1 pilin PilA 3636607 3124839 PBPRA3200 Photobacterium profundum SS9 pilin PilA YP_131308.1 3636200 D 298386 CDS YP_131309.1 54310289 3121985 3636660..3638297 1 NC_006370.1 type IV pilin assembly protein PilB 3638297 3121985 PBPRA3201 Photobacterium profundum SS9 type IV pilin assembly protein PilB YP_131309.1 3636660 D 298386 CDS YP_131310.1 54310290 3125454 3638397..3639617 1 NC_006370.1 Type IV pilin biogenesis protein 3639617 3125454 PBPRA3202 Photobacterium profundum SS9 Type IV pilin biogenesis protein YP_131310.1 3638397 D 298386 CDS YP_131311.1 54310291 3123500 3639765..3640664 1 NC_006370.1 leader peptidase PilD 3640664 3123500 PBPRA3203 Photobacterium profundum SS9 leader peptidase PilD YP_131311.1 3639765 D 298386 CDS YP_131312.1 54310292 3123331 3640667..3641269 1 NC_006370.1 dephospho-CoA kinase 3641269 3123331 PBPRA3204 Photobacterium profundum SS9 dephospho-CoA kinase YP_131312.1 3640667 D 298386 CDS YP_131313.1 54310293 3123015 3641324..3642061 1 NC_006370.1 hypothetical protein 3642061 3123015 PBPRA3205 Photobacterium profundum SS9 hypothetical protein YP_131313.1 3641324 D 298386 CDS YP_131314.1 54310294 3123210 3642055..3642285 1 NC_006370.1 zinc-binding protein 3642285 3123210 PBPRA3206 Photobacterium profundum SS9 zinc-binding protein YP_131314.1 3642055 D 298386 CDS YP_131315.1 54310295 3123358 complement(3642309..3642728) 1 NC_006370.1 mutator MutT protein 3642728 3123358 PBPRA3207 Photobacterium profundum SS9 mutator MutT protein YP_131315.1 3642309 R 298386 CDS YP_131316.1 54310296 3124348 complement(3642881..3645613) 1 NC_006370.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 3645613 3124348 PBPRA3208 Photobacterium profundum SS9 preprotein translocase subunit SecA YP_131316.1 3642881 R 298386 CDS YP_131317.1 54310297 3123606 3645968..3646441 1 NC_006370.1 hypothetical protein 3646441 3123606 PBPRA3209 Photobacterium profundum SS9 hypothetical protein YP_131317.1 3645968 D 298386 CDS YP_131318.2 161936288 3123972 complement(3646526..3647440) 1 NC_006370.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 3647440 lpxC 3123972 lpxC Photobacterium profundum SS9 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_131318.2 3646526 R 298386 CDS YP_131319.1 54310299 3122884 complement(3647625..3648809) 1 NC_006370.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 3648809 3122884 PBPRA3211 Photobacterium profundum SS9 cell division protein FtsZ YP_131319.1 3647625 R 298386 CDS YP_131320.1 54310300 3122336 complement(3648843..3650099) 1 NC_006370.1 ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane; cell division protein FtsA 3650099 ftsA 3122336 ftsA Photobacterium profundum SS9 cell division protein FtsA YP_131320.1 3648843 R 298386 CDS YP_131321.1 54310301 3122896 complement(3650115..3650876) 1 NC_006370.1 cell division protein FtsQ 3650876 3122896 PBPRA3213 Photobacterium profundum SS9 cell division protein FtsQ YP_131321.1 3650115 R 298386 CDS YP_131322.1 54310302 3124019 complement(3651142..3652605) 1 NC_006370.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 3652605 murC 3124019 murC Photobacterium profundum SS9 UDP-N-acetylmuramate--L-alanine ligase YP_131322.1 3651142 R 298386 CDS YP_131323.1 54310303 3123531 complement(3652618..3653700) 1 NC_006370.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 3653700 murG 3123531 murG Photobacterium profundum SS9 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_131323.1 3652618 R 298386 CDS YP_131324.1 54310304 3123000 complement(3653669..3654904) 1 NC_006370.1 cell division protein FtsW 3654904 3123000 PBPRA3216 Photobacterium profundum SS9 cell division protein FtsW YP_131324.1 3653669 R 298386 CDS YP_131325.1 54310305 3125440 complement(3654898..3656241) 1 NC_006370.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 3656241 murD 3125440 murD Photobacterium profundum SS9 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_131325.1 3654898 R 298386 CDS YP_131326.1 54310306 3122344 complement(3656242..3657324) 1 NC_006370.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 3657324 mraY 3122344 mraY Photobacterium profundum SS9 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_131326.1 3656242 R 298386 CDS YP_131327.1 54310307 3124522 complement(3657321..3658727) 1 NC_006370.1 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-- D-alanyl-D-alanyl ligase 3658727 3124522 PBPRA3219 Photobacterium profundum SS9 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-- D-alanyl-D-alanyl ligase YP_131327.1 3657321 R 298386 CDS YP_131328.1 54310308 3122077 complement(3658724..3660244) 1 NC_006370.1 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 3660244 3122077 PBPRA3220 Photobacterium profundum SS9 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_131328.1 3658724 R 298386 CDS YP_131329.1 54310309 3124447 complement(3660259..3662013) 1 NC_006370.1 division protein FtsI; penicillin-binding protein 3662013 3124447 PBPRA3221 Photobacterium profundum SS9 division protein FtsI; penicillin-binding protein YP_131329.1 3660259 R 298386 CDS YP_131330.1 54310310 3122190 complement(3662017..3662337) 1 NC_006370.1 cell division protein FtsL 3662337 3122190 PBPRA3222 Photobacterium profundum SS9 cell division protein FtsL YP_131330.1 3662017 R 298386 CDS YP_131331.1 54310311 3124540 complement(3662334..3663281) 1 NC_006370.1 S-adenosyl-methyltransferase MraW 3663281 mraW 3124540 mraW Photobacterium profundum SS9 S-adenosyl-methyltransferase MraW YP_131331.1 3662334 R 298386 CDS YP_131332.1 54310312 3122387 3663352..3663657 1 NC_006370.1 hypothetical protein 3663657 3122387 PBPRA3224 Photobacterium profundum SS9 hypothetical protein YP_131332.1 3663352 D 298386 CDS YP_131333.1 54310313 3124544 3663957..3664199 1 NC_006370.1 hypothetical protein 3664199 3124544 PBPRA3225 Photobacterium profundum SS9 hypothetical protein YP_131333.1 3663957 D 298386 CDS YP_131334.1 54310314 3125419 complement(3664347..3665207) 1 NC_006370.1 methyltransferase 3665207 3125419 PBPRA3226 Photobacterium profundum SS9 methyltransferase YP_131334.1 3664347 R 298386 CDS YP_131335.1 54310315 3123366 3665260..3667101 1 NC_006370.1 lipoprotein 3667101 3123366 PBPRA3227 Photobacterium profundum SS9 lipoprotein YP_131335.1 3665260 D 298386 CDS YP_131336.1 54310316 3125046 3667076..3667453 1 NC_006370.1 hypothetical protein 3667453 3125046 PBPRA3228 Photobacterium profundum SS9 hypothetical protein YP_131336.1 3667076 D 298386 CDS YP_131337.1 54310317 3123376 3667456..3668046 1 NC_006370.1 phosphoheptose isomerase 3668046 3123376 PBPRA3229 Photobacterium profundum SS9 phosphoheptose isomerase YP_131337.1 3667456 D 298386 CDS YP_131338.1 54310318 3122959 3668050..3668589 1 NC_006370.1 hemolysin 3668589 3122959 PBPRA3230 Photobacterium profundum SS9 hemolysin YP_131338.1 3668050 D 298386 CDS YP_131339.1 54310319 3123100 complement(3668664..3669170) 1 NC_006370.1 ClpXP protease specificity-enhancing factor 3669170 3123100 PBPRA3231 Photobacterium profundum SS9 ClpXP protease specificity-enhancing factor YP_131339.1 3668664 R 298386 CDS YP_131340.1 54310320 3124666 complement(3669171..3669809) 1 NC_006370.1 transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A 3669809 sspA 3124666 sspA Photobacterium profundum SS9 stringent starvation protein A YP_131340.1 3669171 R 298386 CDS YP_131341.1 54310321 3123916 complement(3669897..3670634) 1 NC_006370.1 ubiquinol--cytochrome c reductase, cytochrome c1 3670634 3123916 PBPRA3233 Photobacterium profundum SS9 ubiquinol--cytochrome c reductase, cytochrome c1 YP_131341.1 3669897 R 298386 CDS YP_131342.1 54310322 3124488 complement(3670631..3671896) 1 NC_006370.1 ubiquinol-cytochrome c reductase, cytochrome B 3671896 3124488 PBPRA3234 Photobacterium profundum SS9 ubiquinol-cytochrome c reductase, cytochrome B YP_131342.1 3670631 R 298386 CDS YP_131343.1 54310323 3124020 complement(3671896..3672486) 1 NC_006370.1 ubiquinol-cytochrome c reductase,iron-sulfur subunit 3672486 3124020 PBPRA3235 Photobacterium profundum SS9 ubiquinol-cytochrome c reductase,iron-sulfur subunit YP_131343.1 3671896 R 298386 CDS YP_131344.1 54310324 3124018 complement(3672816..3673223) 1 NC_006370.1 30S ribosomal protein S9 3673223 3124018 PBPRA3236 Photobacterium profundum SS9 30S ribosomal protein S9 YP_131344.1 3672816 R 298386 CDS YP_131345.1 54310325 3122904 complement(3673224..3673652) 1 NC_006370.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 3673652 rplM 3122904 rplM Photobacterium profundum SS9 50S ribosomal protein L13 YP_131345.1 3673224 R 298386 CDS YP_131346.1 54310326 3125313 complement(3673941..3675044) 1 NC_006370.1 ATPase 3675044 3125313 PBPRA3238 Photobacterium profundum SS9 ATPase YP_131346.1 3673941 R 298386 CDS YP_131347.1 54310327 3125198 3675223..3675660 1 NC_006370.1 cytochrome d ubiquinol oxidase subunit III 3675660 3125198 PBPRA3239 Photobacterium profundum SS9 cytochrome d ubiquinol oxidase subunit III YP_131347.1 3675223 D 298386 CDS YP_131348.1 54310328 3123486 3675776..3677143 1 NC_006370.1 DegQ serine protease 3677143 3123486 PBPRA3240 Photobacterium profundum SS9 DegQ serine protease YP_131348.1 3675776 D 298386 CDS YP_131349.1 54310329 3123264 3677406..3678494 1 NC_006370.1 DegS serine protease 3678494 3123264 PBPRA3241 Photobacterium profundum SS9 DegS serine protease YP_131349.1 3677406 D 298386 CDS YP_131350.1 54310330 3124297 complement(3678615..3679877) 1 NC_006370.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3679877 3124297 PBPRA3242 Photobacterium profundum SS9 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_131350.1 3678615 R 298386 CDS YP_131351.1 54310331 3124782 complement(3679885..3680139) 1 NC_006370.1 BolA/YrbA family protein, transcriptional regulator 3680139 3124782 PBPRA3243 Photobacterium profundum SS9 BolA/YrbA family protein, transcriptional regulator YP_131351.1 3679885 R 298386 CDS YP_131352.1 54310332 3122177 complement(3680159..3680470) 1 NC_006370.1 anti-sigma B factor antagonist 3680470 3122177 PBPRA3244 Photobacterium profundum SS9 anti-sigma B factor antagonist YP_131352.1 3680159 R 298386 CDS YP_131353.1 54310333 3122075 complement(3680463..3681107) 1 NC_006370.1 hypothetical protein 3681107 3122075 PBPRA3245 Photobacterium profundum SS9 hypothetical protein YP_131353.1 3680463 R 298386 CDS YP_131354.1 54310334 3122064 complement(3681119..3681619) 1 NC_006370.1 ABC transporter 3681619 3122064 PBPRA3246 Photobacterium profundum SS9 ABC transporter YP_131354.1 3681119 R 298386 CDS YP_131355.1 54310335 3122423 complement(3681687..3682469) 1 NC_006370.1 hypothetical protein 3682469 3122423 PBPRA3247 Photobacterium profundum SS9 hypothetical protein YP_131355.1 3681687 R 298386 CDS YP_131356.1 54310336 3123882 complement(3682688..3683503) 1 NC_006370.1 ABC transporter, ATP-binding protein 3683503 3123882 PBPRA3248 Photobacterium profundum SS9 ABC transporter, ATP-binding protein YP_131356.1 3682688 R 298386 CDS YP_131357.1 54310337 3122481 3683999..3684964 1 NC_006370.1 Ca2+/Na+ antiporter 3684964 3122481 PBPRA3249 Photobacterium profundum SS9 Ca2+/Na+ antiporter YP_131357.1 3683999 D 298386 CDS YP_131358.1 54310338 3122542 3684977..3685948 1 NC_006370.1 sugar phosphate isomerase 3685948 3122542 PBPRA3250 Photobacterium profundum SS9 sugar phosphate isomerase YP_131358.1 3684977 D 298386 CDS YP_131359.1 54310339 3122558 3685948..3686505 1 NC_006370.1 forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3686505 3122558 PBPRA3251 Photobacterium profundum SS9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_131359.1 3685948 D 298386 CDS YP_131360.1 54310340 3122733 3686502..3687065 1 NC_006370.1 hypothetical protein 3687065 3122733 PBPRA3252 Photobacterium profundum SS9 hypothetical protein YP_131360.1 3686502 D 298386 CDS YP_131361.1 54310341 3124414 3687046..3687543 1 NC_006370.1 hypothetical protein 3687543 3124414 PBPRA3253 Photobacterium profundum SS9 hypothetical protein YP_131361.1 3687046 D 298386 CDS YP_131362.1 54310342 3123157 3687553..3688278 1 NC_006370.1 ABC transporter, ATP-binding protein 3688278 3123157 PBPRA3254 Photobacterium profundum SS9 ABC transporter, ATP-binding protein YP_131362.1 3687553 D 298386 CDS YP_131363.1 54310343 3122955 3688332..3689846 1 NC_006370.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 3689846 3122955 PBPRA3255 Photobacterium profundum SS9 RNA polymerase factor sigma-54 YP_131363.1 3688332 D 298386 CDS YP_131364.1 54310344 3123403 3689867..3690160 1 NC_006370.1 sigma-54 modulation protein 3690160 3123403 PBPRA3256 Photobacterium profundum SS9 sigma-54 modulation protein YP_131364.1 3689867 D 298386 CDS YP_131365.1 54310345 3123816 3690181..3690612 1 NC_006370.1 nitrogen regulatory IIA protein PtsN 3690612 3123816 PBPRA3257 Photobacterium profundum SS9 nitrogen regulatory IIA protein PtsN YP_131365.1 3690181 D 298386 CDS YP_131366.1 54310346 3124458 3690649..3691497 1 NC_006370.1 hypothetical protein 3691497 3124458 PBPRA3258 Photobacterium profundum SS9 hypothetical protein YP_131366.1 3690649 D 298386 CDS YP_131367.1 54310347 3123657 3691497..3691772 1 NC_006370.1 phosphocarrier protein NPr 3691772 3123657 PBPRA3259 Photobacterium profundum SS9 phosphocarrier protein NPr YP_131367.1 3691497 D 298386 CDS YP_131368.1 54310348 3123904 3691993..3693351 1 NC_006370.1 magnesium transporter 3693351 3123904 PBPRA3260 Photobacterium profundum SS9 magnesium transporter YP_131368.1 3691993 D 298386 CDS YP_131369.1 54310349 3123522 complement(3693475..3694818) 1 NC_006370.1 protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD; peptidase PmbA 3694818 3123522 PBPRA3261 Photobacterium profundum SS9 peptidase PmbA YP_131369.1 3693475 R 298386 CDS YP_131370.1 54310350 3124861 3695010..3695465 1 NC_006370.1 hypothetical protein 3695465 3124861 PBPRA3262 Photobacterium profundum SS9 hypothetical protein YP_131370.1 3695010 D 298386 CDS YP_131371.1 54310351 3124077 complement(3695559..3697022) 1 NC_006370.1 TldD, Zn-dependent protease and theirinactivated homologs 3697022 3124077 PBPRA3263 Photobacterium profundum SS9 TldD, Zn-dependent protease and theirinactivated homologs YP_131371.1 3695559 R 298386 CDS YP_131372.1 54310352 3124554 complement(3697023..3697841) 1 NC_006370.1 carbon-nitrogen hydrolase 3697841 3124554 PBPRA3264 Photobacterium profundum SS9 carbon-nitrogen hydrolase YP_131372.1 3697023 R 298386 CDS YP_131373.1 54310353 3124256 complement(3697890..3701780) 1 NC_006370.1 hypothetical protein 3701780 3124256 PBPRA3265 Photobacterium profundum SS9 hypothetical protein YP_131373.1 3697890 R 298386 CDS YP_131374.1 54310354 3124395 complement(3701801..3703270) 1 NC_006370.1 involved in the processing of the 5'end of 16S rRNA; ribonuclease G 3703270 3124395 PBPRA3266 Photobacterium profundum SS9 ribonuclease G YP_131374.1 3701801 R 298386 CDS YP_131375.1 54310355 3124313 complement(3703283..3703873) 1 NC_006370.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 3703873 maf 3124313 maf Photobacterium profundum SS9 Maf-like protein YP_131375.1 3703283 R 298386 CDS YP_131376.1 54310356 3124601 complement(3703979..3704467) 1 NC_006370.1 part of cell wall structural complex MreBCD; transmembrane component; rod shape-determining protein MreD 3704467 3124601 PBPRA3268 Photobacterium profundum SS9 rod shape-determining protein MreD YP_131376.1 3703979 R 298386 CDS YP_131377.1 54310357 3124837 complement(3704457..3705317) 1 NC_006370.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 3705317 3124837 PBPRA3269 Photobacterium profundum SS9 rod shape-determining protein MreC YP_131377.1 3704457 R 298386 CDS YP_131378.1 54310358 3125444 complement(3705358..3706401) 1 NC_006370.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 3706401 3125444 PBPRA3270 Photobacterium profundum SS9 rod shape-determining protein MreB YP_131378.1 3705358 R 298386 CDS YP_131379.1 54310359 3125312 complement(3706516..3710058) 1 NC_006370.1 MSHA biogenesis protein MshQ 3710058 3125312 PBPRA3271 Photobacterium profundum SS9 MSHA biogenesis protein MshQ YP_131379.1 3706516 R 298386 CDS YP_131380.1 54310360 3125340 complement(3710058..3710444) 1 NC_006370.1 hypothetical protein 3710444 3125340 PBPRA3272 Photobacterium profundum SS9 hypothetical protein YP_131380.1 3710058 R 298386 CDS YP_131381.1 54310361 3125395 complement(3710467..3711180) 1 NC_006370.1 hypothetical protein 3711180 3125395 PBPRA3273 Photobacterium profundum SS9 hypothetical protein YP_131381.1 3710467 R 298386 CDS YP_131382.1 54310362 3125133 complement(3711228..3711854) 1 NC_006370.1 pilin protein 3711854 3125133 PBPRA3274 Photobacterium profundum SS9 pilin protein YP_131382.1 3711228 R 298386 CDS YP_131383.1 54310363 3122638 complement(3711851..3712354) 1 NC_006370.1 hypothetical protein 3712354 3122638 PBPRA3275 Photobacterium profundum SS9 hypothetical protein YP_131383.1 3711851 R 298386 CDS YP_131384.1 54310364 3122888 complement(3712442..3712918) 1 NC_006370.1 MSHA pilin protein MshA 3712918 3122888 PBPRA3276 Photobacterium profundum SS9 MSHA pilin protein MshA YP_131384.1 3712442 R 298386 CDS YP_131385.1 54310365 3124858 complement(3712932..3713522) 1 NC_006370.1 MSHA pilin protein MshB 3713522 3124858 PBPRA3277 Photobacterium profundum SS9 MSHA pilin protein MshB YP_131385.1 3712932 R 298386 CDS YP_131386.1 54310366 3124001 complement(3713547..3713891) 1 NC_006370.1 hypothetical protein 3713891 3124001 PBPRA3278 Photobacterium profundum SS9 hypothetical protein YP_131386.1 3713547 R 298386 CDS YP_131387.1 54310367 3124045 complement(3714013..3715236) 1 NC_006370.1 MSHA biogenesis protein MshG 3715236 3124045 PBPRA3279 Photobacterium profundum SS9 MSHA biogenesis protein MshG YP_131387.1 3714013 R 298386 CDS YP_131388.1 54310368 3124876 complement(3715244..3716956) 1 NC_006370.1 MSHA biogenesis protein MshE 3716956 3124876 PBPRA3280 Photobacterium profundum SS9 MSHA biogenesis protein MshE YP_131388.1 3715244 R 298386 CDS YP_131389.1 54310369 3123275 complement(3716961..3718223) 1 NC_006370.1 hypothetical protein 3718223 3123275 PBPRA3281 Photobacterium profundum SS9 hypothetical protein YP_131389.1 3716961 R 298386 CDS YP_131390.1 54310370 3122846 complement(3718226..3719068) 1 NC_006370.1 type II secretory pathway protein ExeA 3719068 3122846 PBPRA3282 Photobacterium profundum SS9 type II secretory pathway protein ExeA YP_131390.1 3718226 R 298386 CDS YP_131391.1 54310371 3123865 complement(3719072..3720742) 1 NC_006370.1 MSHA biogenesis protein MshL 3720742 3123865 PBPRA3283 Photobacterium profundum SS9 MSHA biogenesis protein MshL YP_131391.1 3719072 R 298386 CDS YP_131392.1 54310372 3123176 complement(3720752..3721084) 1 NC_006370.1 MSHA biogenesis protein MshK 3721084 3123176 PBPRA3284 Photobacterium profundum SS9 MSHA biogenesis protein MshK YP_131392.1 3720752 R 298386 CDS YP_131393.1 54310373 3124455 complement(3721077..3721712) 1 NC_006370.1 MSHA biogenesis protein MshJ 3721712 3124455 PBPRA3285 Photobacterium profundum SS9 MSHA biogenesis protein MshJ YP_131393.1 3721077 R 298386 CDS YP_131394.1 54310374 3123023 complement(3721709..3723184) 1 NC_006370.1 MSHA biogenesis protein MshI 3723184 3123023 PBPRA3286 Photobacterium profundum SS9 MSHA biogenesis protein MshI YP_131394.1 3721709 R 298386 CDS YP_131395.1 54310375 3123294 complement(3723342..3725285) 1 NC_006370.1 regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD 3725285 3123294 PBPRA3287 Photobacterium profundum SS9 regulatory protein CsrD YP_131395.1 3723342 R 298386 CDS YP_131396.2 161936287 3124213 complement(3726755..3727306) 1 NC_006370.1 binds to single stranded DNA and PriA helcase facilitate replication restart; single-stranded DNA-binding protein 3727306 3124213 PBPRA3289 Photobacterium profundum SS9 single-stranded DNA-binding protein YP_131396.2 3726755 R 298386 CDS YP_131397.1 54310377 3123710 3727669..3730494 1 NC_006370.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 3730494 uvrA 3123710 uvrA Photobacterium profundum SS9 excinuclease ABC subunit A YP_131397.1 3727669 D 298386 CDS YP_131398.1 54310378 3124818 3730593..3732362 1 NC_006370.1 hypothetical protein 3732362 3124818 PBPRA3291 Photobacterium profundum SS9 hypothetical protein YP_131398.1 3730593 D 298386 CDS YP_131399.1 54310379 3124084 complement(3732443..3733561) 1 NC_006370.1 Serine-pyruvate aminotransferase/ aspartate aminotransferase 3733561 3124084 PBPRA3292 Photobacterium profundum SS9 Serine-pyruvate aminotransferase/ aspartate aminotransferase YP_131399.1 3732443 R 298386 CDS YP_131400.1 54310380 3124754 3734130..3735509 1 NC_006370.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase 3735509 3124754 PBPRA3293 Photobacterium profundum SS9 aspartate kinase YP_131400.1 3734130 D 298386 CDS YP_131401.1 54310381 3124469 complement(3735593..3739264) 1 NC_006370.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 3739264 metH 3124469 metH Photobacterium profundum SS9 B12-dependent methionine synthase YP_131401.1 3735593 R 298386 CDS YP_131402.1 54310382 3124189 3739632..3740741 1 NC_006370.1 Na+/H+ antiporter 3740741 3124189 PBPRA3295 Photobacterium profundum SS9 Na+/H+ antiporter YP_131402.1 3739632 D 298386 CDS YP_131403.1 54310383 3123214 3740910..3741242 1 NC_006370.1 hypothetical protein 3741242 3123214 PBPRA3296 Photobacterium profundum SS9 hypothetical protein YP_131403.1 3740910 D 298386 CDS YP_131404.1 54310384 3125485 3741244..3741807 1 NC_006370.1 transposase 3741807 3125485 PBPRA3297 Photobacterium profundum SS9 transposase YP_131404.1 3741244 D 298386 CDS YP_131405.1 54310385 3125457 3741886..3742356 1 NC_006370.1 transposase and inactivated derivative 3742356 3125457 PBPRA3298 Photobacterium profundum SS9 transposase and inactivated derivative YP_131405.1 3741886 D 298386 CDS YP_131406.1 54310386 3125223 3742358..3742921 1 NC_006370.1 transposase and inactivated derivative 3742921 3125223 PBPRA3299 Photobacterium profundum SS9 transposase and inactivated derivative YP_131406.1 3742358 D 298386 CDS YP_131407.1 54310387 3122377 complement(3754796..3755539) 1 NC_006370.1 sulfite synthesis pathway protein 3755539 3122377 PBPRA3307 Photobacterium profundum SS9 sulfite synthesis pathway protein YP_131407.1 3754796 R 298386 CDS YP_131408.1 54310388 3122429 complement(3755552..3756178) 1 NC_006370.1 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 3756178 3122429 PBPRA3308 Photobacterium profundum SS9 adenylylsulfate kinase YP_131408.1 3755552 R 298386 CDS YP_131409.1 54310389 3123893 complement(3756211..3757974) 1 NC_006370.1 sodium/sulfate symporter 3757974 3123893 PBPRA3309 Photobacterium profundum SS9 sodium/sulfate symporter YP_131409.1 3756211 R 298386 CDS YP_131410.1 54310390 3122104 complement(3757943..3759373) 1 NC_006370.1 may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 3759373 cysN 3122104 cysN Photobacterium profundum SS9 sulfate adenylyltransferase subunit 1 YP_131410.1 3757943 R 298386 CDS YP_131411.1 54310391 3121958 complement(3759384..3760304) 1 NC_006370.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 3760304 3121958 PBPRA3311 Photobacterium profundum SS9 sulfate adenylyltransferase subunit 2 YP_131411.1 3759384 R 298386 CDS YP_131412.1 54310392 3125518 complement(3760306..3761715) 1 NC_006370.1 siroheme synthase 3761715 3125518 PBPRA3312 Photobacterium profundum SS9 siroheme synthase YP_131412.1 3760306 R 298386 CDS YP_131413.1 54310393 3122902 3762102..3764090 1 NC_006370.1 periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein 3764090 cpdB 3122902 cpdB Photobacterium profundum SS9 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein YP_131413.1 3762102 D 298386 CDS YP_131414.1 54310394 3123438 3764191..3764757 1 NC_006370.1 cAMP-binding proteins 3764757 3123438 PBPRA3314 Photobacterium profundum SS9 cAMP-binding proteins YP_131414.1 3764191 D 298386 CDS YP_131415.1 54310395 3123787 3764862..3765314 1 NC_006370.1 ElaA-like protein 3765314 3123787 PBPRA3315 Photobacterium profundum SS9 ElaA-like protein YP_131415.1 3764862 D 298386 CDS YP_131416.1 54310396 3124114 complement(3765405..3766127) 1 NC_006370.1 hypothetical protein 3766127 3124114 PBPRA3316 Photobacterium profundum SS9 hypothetical protein YP_131416.1 3765405 R 298386 CDS YP_131417.1 54310397 3124791 3766241..3766861 1 NC_006370.1 peptidyl-prolyl cis-trans isomerase 3766861 3124791 PBPRA3317 Photobacterium profundum SS9 peptidyl-prolyl cis-trans isomerase YP_131417.1 3766241 D 298386 CDS YP_131418.1 54310398 3122898 3767038..3767529 1 NC_006370.1 hypothetical protein 3767529 3122898 PBPRA3318 Photobacterium profundum SS9 hypothetical protein YP_131418.1 3767038 D 298386 CDS YP_131419.1 54310399 3124048 complement(3767693..3768454) 1 NC_006370.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 3768454 3124048 PBPRA3319 Photobacterium profundum SS9 phosphoadenosine phosphosulfate reductase YP_131419.1 3767693 R 298386 CDS YP_131420.1 54310400 3122708 complement(3768447..3770138) 1 NC_006370.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 3770138 3122708 PBPRA3320 Photobacterium profundum SS9 sulfite reductase subunit beta YP_131420.1 3768447 R 298386 CDS YP_131421.1 54310401 3125530 complement(3770138..3771955) 1 NC_006370.1 sulfite reductase (NADPH) flavoprotein alpha-component 3771955 3125530 PBPRA3321 Photobacterium profundum SS9 sulfite reductase (NADPH) flavoprotein alpha-component YP_131421.1 3770138 R 298386 CDS YP_131422.1 54310402 3124995 complement(3772124..3772357) 1 NC_006370.1 hypothetical protein 3772357 3124995 PBPRA3322 Photobacterium profundum SS9 hypothetical protein YP_131422.1 3772124 R 298386 CDS YP_131423.1 54310403 3124850 complement(3772474..3773124) 1 NC_006370.1 hypothetical protein 3773124 3124850 PBPRA3323 Photobacterium profundum SS9 hypothetical protein YP_131423.1 3772474 R 298386 CDS YP_131424.1 54310404 3124437 3773409..3773672 1 NC_006370.1 hypothetical protein 3773672 3124437 PBPRA3324 Photobacterium profundum SS9 hypothetical protein YP_131424.1 3773409 D 298386 CDS YP_131425.1 54310405 3122273 complement(3773714..3774754) 1 NC_006370.1 tRNA-dihydrouridine synthase A 3774754 3122273 PBPRA3325 Photobacterium profundum SS9 tRNA-dihydrouridine synthase A YP_131425.1 3773714 R 298386 CDS YP_131426.1 54310406 3123327 3775256..3775702 1 NC_006370.1 zinc uptake regulation protein 3775702 3123327 PBPRA3326 Photobacterium profundum SS9 zinc uptake regulation protein YP_131426.1 3775256 D 298386 CDS YP_131427.1 54310407 3121996 3775736..3776197 1 NC_006370.1 hypothetical protein 3776197 3121996 PBPRA3327 Photobacterium profundum SS9 hypothetical protein YP_131427.1 3775736 D 298386 CDS YP_131428.1 54310408 3123057 complement(3776305..3777957) 1 NC_006370.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 3777957 pgi 3123057 pgi Photobacterium profundum SS9 glucose-6-phosphate isomerase YP_131428.1 3776305 R 298386 CDS YP_131429.1 54310409 3124022 complement(3778427..3779677) 1 NC_006370.1 hypothetical protein 3779677 3124022 PBPRA3329 Photobacterium profundum SS9 hypothetical protein YP_131429.1 3778427 R 298386 CDS YP_131430.1 54310410 3122161 complement(3779702..3780781) 1 NC_006370.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 3780781 alr 3122161 alr Photobacterium profundum SS9 alanine racemase YP_131430.1 3779702 R 298386 CDS YP_131431.1 54310411 3122692 complement(3780809..3782206) 1 NC_006370.1 unwinds double stranded DNA; replicative DNA helicase 3782206 3122692 PBPRA3331 Photobacterium profundum SS9 replicative DNA helicase YP_131431.1 3780809 R 298386 CDS YP_131432.1 54310412 3122701 3782453..3783208 1 NC_006370.1 hypothetical protein 3783208 3122701 PBPRA3332 Photobacterium profundum SS9 hypothetical protein YP_131432.1 3782453 D 298386 CDS YP_131433.1 54310413 3124108 complement(3783453..3783815) 1 NC_006370.1 hypothetical protein 3783815 3124108 PBPRA3333 Photobacterium profundum SS9 hypothetical protein YP_131433.1 3783453 R 298386 CDS YP_131434.1 54310414 3124571 complement(3783812..3784834) 1 NC_006370.1 hypothetical protein 3784834 3124571 PBPRA3334 Photobacterium profundum SS9 hypothetical protein YP_131434.1 3783812 R 298386 CDS YP_131435.1 54310415 3124612 3785461..3785706 1 NC_006370.1 transposase 3785706 3124612 PBPRA3335 Photobacterium profundum SS9 transposase YP_131435.1 3785461 D 298386 CDS YP_131436.1 54310416 3124632 complement(3785900..3786352) 1 NC_006370.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 3786352 rplI 3124632 rplI Photobacterium profundum SS9 50S ribosomal protein L9 YP_131436.1 3785900 R 298386 CDS YP_131437.1 54310417 3123301 complement(3786390..3786617) 1 NC_006370.1 ribosomal protein S18 3786617 3123301 PBPRA3337 Photobacterium profundum SS9 ribosomal protein S18 YP_131437.1 3786390 R 298386 CDS YP_131438.1 54310418 3122759 complement(3786621..3786935) 1 NC_006370.1 binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 3786935 3122759 PBPRA3338 Photobacterium profundum SS9 primosomal replication protein N YP_131438.1 3786621 R 298386 CDS YP_131439.1 54310419 3122736 complement(3786944..3787387) 1 NC_006370.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 3787387 rpsF 3122736 rpsF Photobacterium profundum SS9 30S ribosomal protein S6 YP_131439.1 3786944 R 298386 CDS YP_131440.1 54310420 3125059 complement(3787617..3788354) 1 NC_006370.1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 3788354 3125059 PBPRA3340 Photobacterium profundum SS9 23S rRNA (guanosine-2'-O-)-methyltransferase YP_131440.1 3787617 R 298386 CDS YP_131441.1 54310421 3125023 complement(3788354..3790915) 1 NC_006370.1 exoribonuclease R 3790915 3125023 PBPRA3341 Photobacterium profundum SS9 exoribonuclease R YP_131441.1 3788354 R 298386 CDS YP_131442.2 161936286 3124936 complement(3791033..3791467) 1 NC_006370.1 negatively regulates the transcription of genes upregulated by nitrosative stress; transcriptional repressor NsrR 3791467 3124936 PBPRA3342 Photobacterium profundum SS9 transcriptional repressor NsrR YP_131442.2 3791033 R 298386 CDS YP_131443.1 54310423 3124922 3791570..3792754 1 NC_006370.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 3792754 3124922 PBPRA3343 Photobacterium profundum SS9 nitric oxide dioxygenase YP_131443.1 3791570 D 298386 CDS YP_131444.1 54310424 3123545 complement(3792908..3793537) 1 NC_006370.1 sodium-type flagellar protein MotX 3793537 3123545 PBPRA3344 Photobacterium profundum SS9 sodium-type flagellar protein MotX YP_131444.1 3792908 R 298386 CDS YP_131445.1 54310425 3123089 complement(3793726..3795024) 1 NC_006370.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 3795024 3123089 PBPRA3345 Photobacterium profundum SS9 adenylosuccinate synthetase YP_131445.1 3793726 R 298386 CDS YP_131446.1 54310426 3122551 complement(3795146..3795394) 1 NC_006370.1 hypothetical protein 3795394 3122551 PBPRA3346 Photobacterium profundum SS9 hypothetical protein YP_131446.1 3795146 R 298386 CDS YP_131447.1 54310427 3123667 complement(3795434..3796432) 1 NC_006370.1 hflC protein 3796432 3123667 PBPRA3347 Photobacterium profundum SS9 hflC protein YP_131447.1 3795434 R 298386 CDS YP_131448.1 54310428 3122839 complement(3796435..3797598) 1 NC_006370.1 membrane protease subunits 3797598 3122839 PBPRA3348 Photobacterium profundum SS9 membrane protease subunits YP_131448.1 3796435 R 298386 CDS YP_131449.1 54310429 3122665 complement(3797652..3798941) 1 NC_006370.1 involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein; GTPase HflX 3798941 3122665 PBPRA3349 Photobacterium profundum SS9 GTPase HflX YP_131449.1 3797652 R 298386 CDS YP_131450.1 54310430 3125252 complement(3798971..3799228) 1 NC_006370.1 Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 3799228 hfq 3125252 hfq Photobacterium profundum SS9 RNA-binding protein Hfq YP_131450.1 3798971 R 298386 CDS YP_131451.1 54310431 3124514 complement(3799320..3800255) 1 NC_006370.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 3800255 miaA 3124514 miaA Photobacterium profundum SS9 tRNA delta(2)-isopentenylpyrophosphate transferase YP_131451.1 3799320 R 298386 CDS YP_131452.1 54310432 3124883 complement(3800248..3802401) 1 NC_006370.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 3802401 mutL 3124883 mutL Photobacterium profundum SS9 DNA mismatch repair protein YP_131452.1 3800248 R 298386 CDS YP_131453.1 54310433 3125429 complement(3802404..3804131) 1 NC_006370.1 N-acetylmuramoyl-L-alanine amidase 3804131 3125429 PBPRA3353 Photobacterium profundum SS9 N-acetylmuramoyl-L-alanine amidase YP_131453.1 3802404 R 298386 CDS YP_131454.1 54310434 3123207 complement(3804128..3804592) 1 NC_006370.1 nucleotide-binding protein 3804592 3123207 PBPRA3354 Photobacterium profundum SS9 nucleotide-binding protein YP_131454.1 3804128 R 298386 CDS YP_131455.1 54310435 3124932 complement(3804601..3806091) 1 NC_006370.1 hypothetical protein 3806091 3124932 PBPRA3355 Photobacterium profundum SS9 hypothetical protein YP_131455.1 3804601 R 298386 CDS YP_131456.1 54310436 3122678 3806711..3807760 1 NC_006370.1 iron-sulfur cluster-binding protein 3807760 3122678 PBPRA3356 Photobacterium profundum SS9 iron-sulfur cluster-binding protein YP_131456.1 3806711 D 298386 CDS YP_131457.1 54310437 3123042 complement(3810333..3810878) 1 NC_006370.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 3810878 3123042 PBPRA3370 Photobacterium profundum SS9 oligoribonuclease YP_131457.1 3810333 R 298386 CDS YP_131458.2 161936285 3123265 3810958..3812010 1 NC_006370.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 3812010 3123265 PBPRA3371 Photobacterium profundum SS9 ribosome-associated GTPase YP_131458.2 3810958 D 298386 CDS YP_131459.1 54310439 3122584 3812224..3813099 1 NC_006370.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 3813099 psd 3122584 psd Photobacterium profundum SS9 phosphatidylserine decarboxylase YP_131459.1 3812224 D 298386 CDS YP_131460.1 54310440 3124185 3813235..3814650 1 NC_006370.1 transporter 3814650 3124185 PBPRA3373 Photobacterium profundum SS9 transporter YP_131460.1 3813235 D 298386 CDS YP_131461.1 54310441 3123494 3814662..3814919 1 NC_006370.1 hypothetical protein 3814919 3123494 PBPRA3374 Photobacterium profundum SS9 hypothetical protein YP_131461.1 3814662 D 298386 CDS YP_131462.1 54310442 3124309 3814916..3816799 1 NC_006370.1 methyl-accepting chemotaxis protein 3816799 3124309 PBPRA3375 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_131462.1 3814916 D 298386 CDS YP_131463.1 54310443 3123523 3817100..3817825 1 NC_006370.1 carbonic anhydrase 3817825 3123523 PBPRA3376 Photobacterium profundum SS9 carbonic anhydrase YP_131463.1 3817100 D 298386 CDS YP_131464.1 54310444 3123753 complement(3818320..3819291) 1 NC_006370.1 lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase 3819291 3123753 PBPRA3377 Photobacterium profundum SS9 lysyl-tRNA synthetase YP_131464.1 3818320 R 298386 CDS YP_131465.1 54310445 3123307 3819842..3821653 1 NC_006370.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 3821653 3123307 PBPRA3378 Photobacterium profundum SS9 fumarate reductase flavoprotein subunit YP_131465.1 3819842 D 298386 CDS YP_131466.1 54310446 3122040 3821653..3822393 1 NC_006370.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 3822393 3122040 PBPRA3379 Photobacterium profundum SS9 fumarate reductase iron-sulfur subunit YP_131466.1 3821653 D 298386 CDS YP_131467.1 54310447 3122241 3822396..3822779 1 NC_006370.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase subunit C 3822779 3122241 PBPRA3380 Photobacterium profundum SS9 fumarate reductase subunit C YP_131467.1 3822396 D 298386 CDS YP_131468.1 54310448 3122906 3822790..3823152 1 NC_006370.1 in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D 3823152 3122906 PBPRA3381 Photobacterium profundum SS9 fumarate reductase subunit D YP_131468.1 3822790 D 298386 CDS YP_131469.2 161936284 3122214 complement(3823399..3823965) 1 NC_006370.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 3823965 3122214 PBPRA3382 Photobacterium profundum SS9 elongation factor P YP_131469.2 3823399 R 298386 CDS YP_131470.1 54310450 3123774 3823949..3825022 1 NC_006370.1 hypothetical protein 3825022 3123774 PBPRA3383 Photobacterium profundum SS9 hypothetical protein YP_131470.1 3823949 D 298386 CDS YP_131471.1 54310451 3125413 3825226..3826842 1 NC_006370.1 methyl-accepting chemotaxis protein 3826842 3125413 PBPRA3384 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_131471.1 3825226 D 298386 CDS YP_131472.1 54310452 3125459 3826887..3828101 1 NC_006370.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 3828101 alr 3125459 alr Photobacterium profundum SS9 alanine racemase YP_131472.1 3826887 D 298386 CDS YP_131473.1 54310453 3122492 3828687..3829592 1 NC_006370.1 ribosomal protein S6 modification protein 3829592 3122492 PBPRA3386 Photobacterium profundum SS9 ribosomal protein S6 modification protein YP_131473.1 3828687 D 298386 CDS YP_131474.1 54310454 3122943 complement(3830626..3832278) 1 NC_006370.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 3832278 groEL 3122943 groEL Photobacterium profundum SS9 molecular chaperone GroEL YP_131474.1 3830626 R 298386 CDS YP_131475.2 161936283 3122921 complement(3832320..3832610) 1 NC_006370.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 3832610 groES 3122921 groES Photobacterium profundum SS9 co-chaperonin GroES YP_131475.2 3832320 R 298386 CDS YP_131476.1 54310456 3123153 3832797..3834206 1 NC_006370.1 hypothetical protein 3834206 3123153 PBPRA3389 Photobacterium profundum SS9 hypothetical protein YP_131476.1 3832797 D 298386 CDS YP_131477.1 54310457 3123977 complement(3834336..3834911) 1 NC_006370.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA 3834911 fxsA 3123977 fxsA Photobacterium profundum SS9 FxsA YP_131477.1 3834336 R 298386 CDS YP_131478.1 54310458 3124576 3835364..3836824 1 NC_006370.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 3836824 aspA 3124576 aspA Photobacterium profundum SS9 aspartate ammonia-lyase YP_131478.1 3835364 D 298386 CDS YP_131479.1 54310459 3124203 3836947..3838254 1 NC_006370.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter 3838254 3124203 PBPRA3392 Photobacterium profundum SS9 anaerobic C4-dicarboxylate transporter YP_131479.1 3836947 D 298386 CDS YP_131480.1 54310460 3124652 3838756..3839673 1 NC_006370.1 LysR family transcriptional regulator 3839673 3124652 PBPRA3393 Photobacterium profundum SS9 LysR family transcriptional regulator YP_131480.1 3838756 D 298386 CDS YP_131481.1 54310461 3123887 3841770..3842576 1 NC_006370.1 LuxR family transcriptional regulator 3842576 3123887 PBPRA3395 Photobacterium profundum SS9 LuxR family transcriptional regulator YP_131481.1 3841770 D 298386 CDS YP_131482.1 54310462 3123529 3842879..3843511 1 NC_006370.1 multidrug ABC transporter 3843511 3123529 PBPRA3396 Photobacterium profundum SS9 multidrug ABC transporter YP_131482.1 3842879 D 298386 CDS YP_131483.1 54310463 3122095 3843693..3843980 1 NC_006370.1 hypothetical protein 3843980 3122095 PBPRA3397 Photobacterium profundum SS9 hypothetical protein YP_131483.1 3843693 D 298386 CDS YP_131484.1 54310464 3124752 3843991..3845694 1 NC_006370.1 sodium/solute symporter 3845694 3124752 PBPRA3398 Photobacterium profundum SS9 sodium/solute symporter YP_131484.1 3843991 D 298386 CDS YP_131485.1 54310465 3123512 complement(3845802..3849266) 1 NC_006370.1 Signal transduction histidinekinase 3849266 3123512 PBPRA3399 Photobacterium profundum SS9 Signal transduction histidinekinase YP_131485.1 3845802 R 298386 CDS YP_131486.1 54310466 3123310 complement(3849418..3850644) 1 NC_006370.1 transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; 3-phenylpropionic acid transporter 3850644 3123310 PBPRA3400 Photobacterium profundum SS9 3-phenylpropionic acid transporter YP_131486.1 3849418 R 298386 CDS YP_131487.1 54310467 3125202 3850954..3852756 1 NC_006370.1 hypothetical protein 3852756 3125202 PBPRA3401 Photobacterium profundum SS9 hypothetical protein YP_131487.1 3850954 D 298386 CDS YP_131488.1 54310468 3125445 3852759..3853382 1 NC_006370.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 3853382 3125445 PBPRA3402 Photobacterium profundum SS9 DNA polymerase III subunit epsilon YP_131488.1 3852759 D 298386 CDS YP_131489.1 54310469 3125480 3853584..3855533 1 NC_006370.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 3855533 3125480 PBPRA3403 Photobacterium profundum SS9 acetyl-CoA synthetase YP_131489.1 3853584 D 298386 CDS YP_131490.1 54310470 3125379 3856338..3856790 1 NC_006370.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 3856790 3125379 PBPRA3404 Photobacterium profundum SS9 3-dehydroquinate dehydratase YP_131490.1 3856338 D 298386 CDS YP_131491.1 54310471 3125212 3856818..3857276 1 NC_006370.1 acetyl-CoA carboxylase, biotin carboxyl carrier protein 3857276 3125212 PBPRA3405 Photobacterium profundum SS9 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_131491.1 3856818 D 298386 CDS YP_131492.1 54310472 3125297 3857289..3858632 1 NC_006370.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 3858632 3125297 PBPRA3406 Photobacterium profundum SS9 acetyl-CoA carboxylase biotin carboxylase subunit YP_131492.1 3857289 D 298386 CDS YP_131493.1 54310473 3125058 3858887..3859168 1 NC_006370.1 hypothetical protein 3859168 3125058 PBPRA3407 Photobacterium profundum SS9 hypothetical protein YP_131493.1 3858887 D 298386 CDS YP_131494.1 54310474 3124957 3859161..3860615 1 NC_006370.1 mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter 3860615 panF 3124957 panF Photobacterium profundum SS9 sodium/panthothenate symporter YP_131494.1 3859161 D 298386 CDS YP_131495.2 161936282 3125045 3860788..3861672 1 NC_006370.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase 3861672 prmA 3125045 prmA Photobacterium profundum SS9 ribosomal protein L11 methyltransferase YP_131495.2 3860788 D 298386 CDS YP_131496.1 54310476 3125147 3861845..3862810 1 NC_006370.1 dihydrouridine synthase 3862810 3125147 PBPRA3410 Photobacterium profundum SS9 dihydrouridine synthase YP_131496.1 3861845 D 298386 CDS YP_131497.1 54310477 3125215 3862834..3863130 1 NC_006370.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; Fis family transcriptional regulator 3863130 fis 3125215 fis Photobacterium profundum SS9 Fis family transcriptional regulator YP_131497.1 3862834 D 298386 CDS YP_131498.1 54310478 3125242 3863576..3864592 1 NC_006370.1 transposase 3864592 3125242 PBPRA3412 Photobacterium profundum SS9 transposase YP_131498.1 3863576 D 298386 CDS YP_131499.1 54310479 3124982 complement(3864772..3865017) 1 NC_006370.1 hypothetical protein 3865017 3124982 PBPRA3413 Photobacterium profundum SS9 hypothetical protein YP_131499.1 3864772 R 298386 CDS YP_131500.1 54310480 3125359 complement(3865248..3865796) 1 NC_006370.1 hypothetical protein 3865796 3125359 PBPRA3414 Photobacterium profundum SS9 hypothetical protein YP_131500.1 3865248 R 298386 CDS YP_131501.1 54310481 3125149 3866009..3866278 1 NC_006370.1 hypothetical protein 3866278 3125149 PBPRA3415 Photobacterium profundum SS9 hypothetical protein YP_131501.1 3866009 D 298386 CDS YP_131502.1 54310482 3124976 complement(3866339..3866635) 1 NC_006370.1 hypothetical protein 3866635 3124976 PBPRA3416 Photobacterium profundum SS9 hypothetical protein YP_131502.1 3866339 R 298386 CDS YP_131503.1 54310483 3124909 3866792..3866998 1 NC_006370.1 hypothetical protein 3866998 3124909 PBPRA3417 Photobacterium profundum SS9 hypothetical protein YP_131503.1 3866792 D 298386 CDS YP_131504.1 54310484 3125541 complement(3867033..3867458) 1 NC_006370.1 mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator 3867458 zntR 3125541 zntR Photobacterium profundum SS9 zinc-responsive transcriptional regulator YP_131504.1 3867033 R 298386 CDS YP_131505.1 54310485 3122312 3867684..3869318 1 NC_006370.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 3869318 purH 3122312 purH Photobacterium profundum SS9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_131505.1 3867684 D 298386 CDS YP_131506.1 54310486 3122089 3869441..3870730 1 NC_006370.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 3870730 3122089 PBPRA3420 Photobacterium profundum SS9 phosphoribosylamine--glycine ligase YP_131506.1 3869441 D 298386 CDS YP_131507.1 54310487 3122285 complement(3870868..3871578) 1 NC_006370.1 hypothetical protein 3871578 3122285 PBPRA3421 Photobacterium profundum SS9 hypothetical protein YP_131507.1 3870868 R 298386 CDS YP_131508.1 54310488 3122348 complement(3871610..3871882) 1 NC_006370.1 DNA-binding protein HU-alpha 3871882 3122348 PBPRA3422 Photobacterium profundum SS9 DNA-binding protein HU-alpha YP_131508.1 3871610 R 298386 CDS YP_131509.1 54310489 3122028 3872112..3873167 1 NC_006370.1 hypothetical protein 3873167 3122028 PBPRA3423 Photobacterium profundum SS9 hypothetical protein YP_131509.1 3872112 D 298386 CDS YP_131510.1 54310490 3122661 complement(3873269..3874588) 1 NC_006370.1 branched chain amino acid transporter 3874588 3122661 PBPRA3424 Photobacterium profundum SS9 branched chain amino acid transporter YP_131510.1 3873269 R 298386 CDS YP_131511.1 54310491 3122718 complement(3875155..3875769) 1 NC_006370.1 hypothetical protein 3875769 3122718 PBPRA3425 Photobacterium profundum SS9 hypothetical protein YP_131511.1 3875155 R 298386 CDS YP_131512.1 54310492 3122738 3875811..3876722 1 NC_006370.1 D-isomer specific 2-hydroxyacid dehydrogenase family protein 3876722 3122738 PBPRA3426 Photobacterium profundum SS9 D-isomer specific 2-hydroxyacid dehydrogenase family protein YP_131512.1 3875811 D 298386 CDS YP_131513.1 54310493 3122561 3876733..3877326 1 NC_006370.1 hypothetical protein 3877326 3122561 PBPRA3427 Photobacterium profundum SS9 hypothetical protein YP_131513.1 3876733 D 298386 CDS YP_131514.1 54310494 3122765 complement(3877484..3878563) 1 NC_006370.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 3878563 hemE 3122765 hemE Photobacterium profundum SS9 uroporphyrinogen decarboxylase YP_131514.1 3877484 R 298386 CDS YP_131515.1 54310495 3122407 complement(3878756..3879556) 1 NC_006370.1 can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase 3879556 nudC 3122407 nudC Photobacterium profundum SS9 NADH pyrophosphatase YP_131515.1 3878756 R 298386 CDS YP_131516.1 54310496 3122786 3879746..3880228 1 NC_006370.1 binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 3880228 3122786 PBPRA3430 Photobacterium profundum SS9 anti-RNA polymerase sigma 70 factor YP_131516.1 3879746 D 298386 CDS YP_131517.1 54310497 3122732 complement(3880492..3884781) 1 NC_006370.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 3884781 3122732 PBPRA3431 Photobacterium profundum SS9 DNA-directed RNA polymerase subunit beta' YP_131517.1 3880492 R 298386 CDS YP_131518.1 54310498 3122565 complement(3884804..3888829) 1 NC_006370.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 3888829 rpoB 3122565 rpoB Photobacterium profundum SS9 DNA-directed RNA polymerase subunit beta YP_131518.1 3884804 R 298386 CDS YP_131519.2 161936281 3122650 complement(3889056..3889421) 1 NC_006370.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 3889421 rplL 3122650 rplL Photobacterium profundum SS9 50S ribosomal protein L7/L12 YP_131519.2 3889056 R 298386 CDS YP_131520.2 161936280 3122639 complement(3889482..3889976) 1 NC_006370.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 3889976 rplJ 3122639 rplJ Photobacterium profundum SS9 50S ribosomal protein L10 YP_131520.2 3889482 R 298386 CDS YP_131521.1 54310501 3122947 complement(3890233..3890934) 1 NC_006370.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 3890934 rplA 3122947 rplA Photobacterium profundum SS9 50S ribosomal protein L1 YP_131521.1 3890233 R 298386 CDS YP_131522.1 54310502 3122827 complement(3890939..3891367) 1 NC_006370.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 3891367 rplK 3122827 rplK Photobacterium profundum SS9 50S ribosomal protein L11 YP_131522.1 3890939 R 298386 CDS YP_131523.1 54310503 3122890 complement(3891491..3892036) 1 NC_006370.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 3892036 nusG 3122890 nusG Photobacterium profundum SS9 transcription antitermination protein NusG YP_131523.1 3891491 R 298386 CDS YP_131524.1 54310504 3124765 complement(3892048..3892425) 1 NC_006370.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 3892425 secE 3124765 secE Photobacterium profundum SS9 preprotein translocase subunit SecE YP_131524.1 3892048 R 298386 CDS YP_131525.2 161936279 3124810 complement(3892644..3893828) 1 NC_006370.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 3893828 tuf 3124810 tuf Photobacterium profundum SS9 elongation factor Tu YP_131525.2 3892644 R 298386 CDS YP_131526.1 54310506 3124710 complement(3894546..3895127) 1 NC_006370.1 hypothetical protein 3895127 3124710 PBPRA3444 Photobacterium profundum SS9 hypothetical protein YP_131526.1 3894546 R 298386 CDS YP_131527.1 54310507 3124697 complement(3895127..3896089) 1 NC_006370.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 3896089 3124697 PBPRA3445 Photobacterium profundum SS9 biotin--protein ligase YP_131527.1 3895127 R 298386 CDS YP_131528.1 54310508 3124696 complement(3896086..3897126) 1 NC_006370.1 UDP-N-acetylpyruvoylglucosamine reductase 3897126 3124696 PBPRA3446 Photobacterium profundum SS9 UDP-N-acetylpyruvoylglucosamine reductase YP_131528.1 3896086 R 298386 CDS YP_131529.1 54310509 3124771 3897202..3897627 1 NC_006370.1 hypothetical protein 3897627 3124771 PBPRA3447 Photobacterium profundum SS9 hypothetical protein YP_131529.1 3897202 D 298386 CDS YP_131530.1 54310510 3124794 3897756..3899105 1 NC_006370.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 3899105 pssA 3124794 pssA Photobacterium profundum SS9 phosphatidylserine synthase YP_131530.1 3897756 D 298386 CDS YP_131531.1 54310511 3124709 3899113..3899742 1 NC_006370.1 pyrazinamidase/nicotinamidase PncA 3899742 3124709 PBPRA3449 Photobacterium profundum SS9 pyrazinamidase/nicotinamidase PncA YP_131531.1 3899113 D 298386 CDS YP_131532.1 54310512 3122088 3899877..3901085 1 NC_006370.1 transposase 3901085 3122088 PBPRA3450 Photobacterium profundum SS9 transposase YP_131532.1 3899877 D 298386 CDS YP_131533.1 54310513 3121982 complement(3901683..3902825) 1 NC_006370.1 transposase 3902825 3121982 PBPRA3451 Photobacterium profundum SS9 transposase YP_131533.1 3901683 R 298386 CDS YP_131534.1 54310514 3122297 3915485..3915943 1 NC_006370.1 RNA-binding protein 3915943 3122297 PBPRA3461 Photobacterium profundum SS9 RNA-binding protein YP_131534.1 3915485 D 298386 CDS YP_131535.1 54310515 3122126 complement(3915912..3916700) 1 NC_006370.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 3916700 3122126 PBPRA3462 Photobacterium profundum SS9 glutamate racemase YP_131535.1 3915912 R 298386 CDS YP_131536.1 54310516 3122113 complement(3916785..3917453) 1 NC_006370.1 hypothetical protein 3917453 3122113 PBPRA3463 Photobacterium profundum SS9 hypothetical protein YP_131536.1 3916785 R 298386 CDS YP_131537.1 54310517 3122282 complement(3917501..3919321) 1 NC_006370.1 outer membrane cobalamin receptor protein 3919321 3122282 PBPRA3464 Photobacterium profundum SS9 outer membrane cobalamin receptor protein YP_131537.1 3917501 R 298386 CDS YP_131538.1 54310518 3122203 3919730..3920836 1 NC_006370.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 3920836 3122203 PBPRA3465 Photobacterium profundum SS9 tRNA (uracil-5-)-methyltransferase YP_131538.1 3919730 D 298386 CDS YP_131539.1 54310519 3122294 complement(3920930..3921304) 1 NC_006370.1 hypothetical protein 3921304 3122294 PBPRA3466 Photobacterium profundum SS9 hypothetical protein YP_131539.1 3920930 R 298386 CDS YP_131540.1 54310520 3122150 complement(3921328..3921960) 1 NC_006370.1 negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR 3921960 3122150 PBPRA3467 Photobacterium profundum SS9 DNA-binding transcriptional repressor FabR YP_131540.1 3921328 R 298386 CDS YP_131541.1 54310521 3122142 3922301..3923710 1 NC_006370.1 catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 3923710 3122142 PBPRA3468 Photobacterium profundum SS9 soluble pyridine nucleotide transhydrogenase YP_131541.1 3922301 D 298386 CDS YP_131542.1 54310522 3122159 complement(3923801..3924634) 1 NC_006370.1 CysQ protein 3924634 3122159 PBPRA3469 Photobacterium profundum SS9 CysQ protein YP_131542.1 3923801 R 298386 CDS YP_131543.1 54310523 3122195 complement(3924644..3925195) 1 NC_006370.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 3925195 nudE 3122195 nudE Photobacterium profundum SS9 ADP-ribose diphosphatase NudE YP_131543.1 3924644 R 298386 CDS YP_131544.1 54310524 3121960 complement(3925289..3926047) 1 NC_006370.1 general secretion pathway protein N 3926047 3121960 PBPRA3471 Photobacterium profundum SS9 general secretion pathway protein N YP_131544.1 3925289 R 298386 CDS YP_131545.1 54310525 3122258 complement(3926050..3926526) 1 NC_006370.1 general secretion pathway protein M 3926526 3122258 PBPRA3472 Photobacterium profundum SS9 general secretion pathway protein M YP_131545.1 3926050 R 298386 CDS YP_131546.1 54310526 3122154 complement(3926523..3927869) 1 NC_006370.1 general secretion pathway protein L 3927869 3122154 PBPRA3473 Photobacterium profundum SS9 general secretion pathway protein L YP_131546.1 3926523 R 298386 CDS YP_131547.1 54310527 3122262 complement(3927811..3928764) 1 NC_006370.1 hypotetical general secretion pathway protein K 3928764 3122262 PBPRA3474 Photobacterium profundum SS9 hypotetical general secretion pathway protein K YP_131547.1 3927811 R 298386 CDS YP_131548.1 54310528 3122289 complement(3928851..3929519) 1 NC_006370.1 Type II secretory pathway, component EpsJ 3929519 3122289 PBPRA3475 Photobacterium profundum SS9 Type II secretory pathway, component EpsJ YP_131548.1 3928851 R 298386 CDS YP_131549.1 54310529 3122065 complement(3929509..3929829) 1 NC_006370.1 type II secretory pathway, pseudopilin EpsI 3929829 3122065 PBPRA3476 Photobacterium profundum SS9 type II secretory pathway, pseudopilin EpsI YP_131549.1 3929509 R 298386 CDS YP_131550.1 54310530 3121991 complement(3929865..3930446) 1 NC_006370.1 general secretion pathway protein H 3930446 3121991 PBPRA3477 Photobacterium profundum SS9 general secretion pathway protein H YP_131550.1 3929865 R 298386 CDS YP_131551.1 54310531 3122209 complement(3930464..3930931) 1 NC_006370.1 type II secretory pathway, pseudopilin EpsG 3930931 3122209 PBPRA3478 Photobacterium profundum SS9 type II secretory pathway, pseudopilin EpsG YP_131551.1 3930464 R 298386 CDS YP_131552.1 54310532 3122270 complement(3930921..3932153) 1 NC_006370.1 general secretion pathway protein F 3932153 3122270 PBPRA3479 Photobacterium profundum SS9 general secretion pathway protein F YP_131552.1 3930921 R 298386 CDS YP_131553.1 54310533 3121973 complement(3932153..3933637) 1 NC_006370.1 general secretion pathway protein E 3933637 3121973 PBPRA3480 Photobacterium profundum SS9 general secretion pathway protein E YP_131553.1 3932153 R 298386 CDS YP_131554.1 54310534 3122295 complement(3933652..3935664) 1 NC_006370.1 type II secretory pathway, component EpsD 3935664 3122295 PBPRA3481 Photobacterium profundum SS9 type II secretory pathway, component EpsD YP_131554.1 3933652 R 298386 CDS YP_131555.1 54310535 3122311 complement(3935707..3936603) 1 NC_006370.1 general secretion pathway protein C 3936603 3122311 PBPRA3482 Photobacterium profundum SS9 general secretion pathway protein C YP_131555.1 3935707 R 298386 CDS YP_131556.1 54310536 3122259 3936862..3937272 1 NC_006370.1 heat shock protein 15 3937272 3122259 PBPRA3483 Photobacterium profundum SS9 heat shock protein 15 YP_131556.1 3936862 D 298386 CDS YP_131557.1 54310537 3122517 3937382..3938260 1 NC_006370.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; heat shock protein 33 3938260 hslO 3122517 hslO Photobacterium profundum SS9 heat shock protein 33 YP_131557.1 3937382 D 298386 CDS YP_131558.1 54310538 3122334 3938620..3940212 1 NC_006370.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 3940212 3122334 PBPRA3485 Photobacterium profundum SS9 phosphoenolpyruvate carboxykinase YP_131558.1 3938620 D 298386 CDS YP_131559.1 54310539 3122728 3940409..3942388 1 NC_006370.1 hypothetical protein 3942388 3122728 PBPRA3486 Photobacterium profundum SS9 hypothetical protein YP_131559.1 3940409 D 298386 CDS YP_131560.1 54310540 3122362 complement(3942343..3943263) 1 NC_006370.1 hypothetical protein 3943263 3122362 PBPRA3487 Photobacterium profundum SS9 hypothetical protein YP_131560.1 3942343 R 298386 CDS YP_131561.1 54310541 3122526 complement(3943345..3943782) 1 NC_006370.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 3943782 3122526 PBPRA3488 Photobacterium profundum SS9 D-tyrosyl-tRNA(Tyr) deacylase YP_131561.1 3943345 R 298386 CDS YP_131562.1 54310542 3122763 complement(3943783..3944742) 1 NC_006370.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 3944742 rbn 3122763 rbn Photobacterium profundum SS9 ribonuclease BN YP_131562.1 3943783 R 298386 CDS YP_131563.1 54310543 3122017 complement(3944805..3945419) 1 NC_006370.1 transcriptional regulator 3945419 3122017 PBPRA3490 Photobacterium profundum SS9 transcriptional regulator YP_131563.1 3944805 R 298386 CDS YP_131564.1 54310544 3122474 complement(3945496..3947340) 1 NC_006370.1 virulence regulator BipA 3947340 3122474 PBPRA3491 Photobacterium profundum SS9 virulence regulator BipA YP_131564.1 3945496 R 298386 CDS YP_131565.1 54310545 3122796 3947899..3949308 1 NC_006370.1 forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase 3949308 glnA 3122796 glnA Photobacterium profundum SS9 glutamine synthetase YP_131565.1 3947899 D 298386 CDS YP_131566.1 54310546 3122674 3949425..3950000 1 NC_006370.1 hypothetical protein 3950000 3122674 PBPRA3493 Photobacterium profundum SS9 hypothetical protein YP_131566.1 3949425 D 298386 CDS YP_131567.1 54310547 3122775 3950150..3951223 1 NC_006370.1 sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation; nitrogen regulation protein NR(II) 3951223 glnL 3122775 glnL Photobacterium profundum SS9 nitrogen regulation protein NR(II) YP_131567.1 3950150 D 298386 CDS YP_131568.1 54310548 3122363 3951298..3952713 1 NC_006370.1 nitrogen regulation protein 3952713 3122363 PBPRA3495 Photobacterium profundum SS9 nitrogen regulation protein YP_131568.1 3951298 D 298386 CDS YP_131569.1 54310549 3122651 3952926..3953978 1 NC_006370.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 3953978 3122651 PBPRA3496 Photobacterium profundum SS9 adenosine deaminase YP_131569.1 3952926 D 298386 CDS YP_131570.1 54310550 3122575 complement(3954089..3955462) 1 NC_006370.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 3955462 3122575 PBPRA3497 Photobacterium profundum SS9 coproporphyrinogen III oxidase YP_131570.1 3954089 R 298386 CDS YP_131571.1 54310551 3122513 complement(3955623..3956102) 1 NC_006370.1 hypothetical protein 3956102 3122513 PBPRA3498 Photobacterium profundum SS9 hypothetical protein YP_131571.1 3955623 R 298386 CDS YP_131572.1 54310552 3122625 complement(3956106..3956648) 1 NC_006370.1 hypothetical protein 3956648 3122625 PBPRA3499 Photobacterium profundum SS9 hypothetical protein YP_131572.1 3956106 R 298386 CDS YP_131573.1 54310553 3122456 complement(3956850..3957113) 1 NC_006370.1 hypothetical protein 3957113 3122456 PBPRA3500 Photobacterium profundum SS9 hypothetical protein YP_131573.1 3956850 R 298386 CDS YP_131574.1 54310554 3122580 complement(3958033..3958689) 1 NC_006370.1 cytochrome c4 3958689 3122580 PBPRA3501 Photobacterium profundum SS9 cytochrome c4 YP_131574.1 3958033 R 298386 CDS YP_131575.1 54310555 3122861 3958740..3959495 1 NC_006370.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 3959495 engB 3122861 engB Photobacterium profundum SS9 ribosome biogenesis GTP-binding protein YsxC YP_131575.1 3958740 D 298386 CDS YP_131576.1 54310556 3122727 complement(3960508..3963321) 1 NC_006370.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 3963321 3122727 PBPRA3503 Photobacterium profundum SS9 DNA polymerase I YP_131576.1 3960508 R 298386 CDS YP_131577.1 54310557 3122662 3963663..3964313 1 NC_006370.1 isoprenoid biosynthesis protein with amidotransferase-like domain 3964313 3122662 PBPRA3504 Photobacterium profundum SS9 isoprenoid biosynthesis protein with amidotransferase-like domain YP_131577.1 3963663 D 298386 CDS YP_131578.1 54310558 3122754 complement(3964575..3965024) 1 NC_006370.1 hypothetical protein 3965024 3122754 PBPRA3505 Photobacterium profundum SS9 hypothetical protein YP_131578.1 3964575 R 298386 CDS YP_131579.1 54310559 3122685 complement(3965101..3965808) 1 NC_006370.1 hypothetical protein 3965808 3122685 PBPRA3506 Photobacterium profundum SS9 hypothetical protein YP_131579.1 3965101 R 298386 CDS YP_131580.1 54310560 3122867 complement(3966003..3966338) 1 NC_006370.1 hypothetical protein 3966338 3122867 PBPRA3507 Photobacterium profundum SS9 hypothetical protein YP_131580.1 3966003 R 298386 CDS YP_131581.1 54310561 3122851 complement(3966664..3968511) 1 NC_006370.1 functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; ATP-dependent DNA helicase RecQ 3968511 3122851 PBPRA3508 Photobacterium profundum SS9 ATP-dependent DNA helicase RecQ YP_131581.1 3966664 R 298386 CDS YP_131582.1 54310562 3122773 3968793..3969704 1 NC_006370.1 RarD 3969704 3122773 PBPRA3509 Photobacterium profundum SS9 RarD YP_131582.1 3968793 D 298386 CDS YP_131583.1 54310563 3122798 3969861..3970610 1 NC_006370.1 AraC family transcriptional regulator 3970610 3122798 PBPRA3510 Photobacterium profundum SS9 AraC family transcriptional regulator YP_131583.1 3969861 D 298386 CDS YP_131584.1 54310564 3123041 3970751..3971407 1 NC_006370.1 threonine efflux protein 3971407 3123041 PBPRA3511 Photobacterium profundum SS9 threonine efflux protein YP_131584.1 3970751 D 298386 CDS YP_131585.1 54310565 3123992 3971558..3973312 1 NC_006370.1 gamma-glutamyltranspeptidase 3973312 3123992 PBPRA3512 Photobacterium profundum SS9 gamma-glutamyltranspeptidase YP_131585.1 3971558 D 298386 CDS YP_131586.1 54310566 3123005 complement(3973445..3975619) 1 NC_006370.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 3975619 uvrD 3123005 uvrD Photobacterium profundum SS9 DNA-dependent helicase II YP_131586.1 3973445 R 298386 CDS YP_131587.1 54310567 3123177 3975912..3976172 1 NC_006370.1 signal peptide protein 3976172 3123177 PBPRA3514 Photobacterium profundum SS9 signal peptide protein YP_131587.1 3975912 D 298386 CDS YP_131588.1 54310568 3122956 3976239..3976496 1 NC_006370.1 signal peptide protein 3976496 3122956 PBPRA3515 Photobacterium profundum SS9 signal peptide protein YP_131588.1 3976239 D 298386 CDS YP_131589.1 54310569 3123088 3976510..3977361 1 NC_006370.1 hypothetical protein 3977361 3123088 PBPRA3516 Photobacterium profundum SS9 hypothetical protein YP_131589.1 3976510 D 298386 CDS YP_131590.1 54310570 3122885 3977423..3978115 1 NC_006370.1 hypothetical protein 3978115 3122885 PBPRA3517 Photobacterium profundum SS9 hypothetical protein YP_131590.1 3977423 D 298386 CDS YP_131591.1 54310571 3122913 3978115..3978573 1 NC_006370.1 transmembrane protein 3978573 3122913 PBPRA3518 Photobacterium profundum SS9 transmembrane protein YP_131591.1 3978115 D 298386 CDS YP_131592.1 54310572 3123352 complement(3978830..3979549) 1 NC_006370.1 hypothetical protein 3979549 3123352 PBPRA3519 Photobacterium profundum SS9 hypothetical protein YP_131592.1 3978830 R 298386 CDS YP_131593.1 54310573 3122880 complement(3979664..3980605) 1 NC_006370.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 3980605 xerC 3122880 xerC Photobacterium profundum SS9 site-specific tyrosine recombinase XerC YP_131593.1 3979664 R 298386 CDS YP_131594.1 54310574 3123422 complement(3980575..3981276) 1 NC_006370.1 hypothetical protein 3981276 3123422 PBPRA3521 Photobacterium profundum SS9 hypothetical protein YP_131594.1 3980575 R 298386 CDS YP_131595.1 54310575 3123232 complement(3981273..3982103) 1 NC_006370.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 3982103 dapF 3123232 dapF Photobacterium profundum SS9 diaminopimelate epimerase YP_131595.1 3981273 R 298386 CDS YP_131596.1 54310576 3123362 complement(3982140..3983390) 1 NC_006370.1 diaminopimelate decarboxylase 3983390 3123362 PBPRA3523 Photobacterium profundum SS9 diaminopimelate decarboxylase YP_131596.1 3982140 R 298386 CDS YP_131597.1 54310577 3123286 3983688..3984005 1 NC_006370.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 3984005 cyaY 3123286 cyaY Photobacterium profundum SS9 frataxin-like protein YP_131597.1 3983688 D 298386 CDS YP_131598.1 54310578 3123246 3984284..3985849 1 NC_006370.1 hypothetical protein 3985849 3123246 PBPRA3525 Photobacterium profundum SS9 hypothetical protein YP_131598.1 3984284 D 298386 CDS YP_131599.1 54310579 3123190 complement(3985864..3988437) 1 NC_006370.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 3988437 cyaA 3123190 cyaA Photobacterium profundum SS9 adenylate cyclase YP_131599.1 3985864 R 298386 CDS YP_131600.1 54310580 3123400 3988741..3989445 1 NC_006370.1 porphobilinogen deaminase 3989445 3123400 PBPRA3527 Photobacterium profundum SS9 porphobilinogen deaminase YP_131600.1 3988741 D 298386 CDS YP_131601.1 54310581 3123128 3989453..3989767 1 NC_006370.1 hypothetical protein 3989767 3123128 PBPRA3528 Photobacterium profundum SS9 hypothetical protein YP_131601.1 3989453 D 298386 CDS YP_131602.1 54310582 3122892 3989776..3990522 1 NC_006370.1 uroporphyrinogen III synthase 3990522 3122892 PBPRA3529 Photobacterium profundum SS9 uroporphyrinogen III synthase YP_131602.1 3989776 D 298386 CDS YP_131603.1 54310583 3123332 3990527..3991828 1 NC_006370.1 uroporphyrin-III C-methyltransferase 3991828 3123332 PBPRA3530 Photobacterium profundum SS9 uroporphyrin-III C-methyltransferase YP_131603.1 3990527 D 298386 CDS YP_131604.1 54310584 3123399 3991825..3993012 1 NC_006370.1 protoheme IX synthesis protein HemY 3993012 3123399 PBPRA3531 Photobacterium profundum SS9 protoheme IX synthesis protein HemY YP_131604.1 3991825 D 298386 CDS YP_131605.1 54310585 3123346 complement(3993379..3993885) 1 NC_006370.1 hypothetical protein 3993885 3123346 PBPRA3532 Photobacterium profundum SS9 hypothetical protein YP_131605.1 3993379 R 298386 CDS YP_131606.1 54310586 3123045 complement(3993920..3994738) 1 NC_006370.1 hypothetical protein 3994738 3123045 PBPRA3533 Photobacterium profundum SS9 hypothetical protein YP_131606.1 3993920 R 298386 CDS YP_131607.1 54310587 3123172 complement(3994796..3997954) 1 NC_006370.1 hipothetical sensory box/GGDEF family protein 3997954 3123172 PBPRA3534 Photobacterium profundum SS9 hipothetical sensory box/GGDEF family protein YP_131607.1 3994796 R 298386 CDS YP_131608.1 54310588 3123133 3998112..3998573 1 NC_006370.1 transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC 3998573 3123133 PBPRA3535 Photobacterium profundum SS9 DNA-binding transcriptional regulator AsnC YP_131608.1 3998112 D 298386 CDS YP_131609.1 54310589 3123622 complement(3998745..3999338) 1 NC_006370.1 NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase 3999338 fre 3123622 fre Photobacterium profundum SS9 FMN reductase YP_131609.1 3998745 R 298386 CDS YP_131610.1 54310590 3123439 complement(3999482..3999637) 1 NC_006370.1 ferredoxin 3999637 3123439 PBPRA3537 Photobacterium profundum SS9 ferredoxin YP_131610.1 3999482 R 298386 CDS YP_131611.1 54310591 3123427 complement(3999779..4001674) 1 NC_006370.1 3-polyprenyl-4-hydroxybenzoate decarboxylase 4001674 3123427 PBPRA3538 Photobacterium profundum SS9 3-polyprenyl-4-hydroxybenzoate decarboxylase YP_131611.1 3999779 R 298386 CDS YP_131612.1 54310592 3123467 complement(4001863..4002858) 1 NC_006370.1 hypothetical protein 4002858 3123467 PBPRA3539 Photobacterium profundum SS9 hypothetical protein YP_131612.1 4001863 R 298386 CDS YP_131613.1 54310593 3123123 complement(4003147..4004514) 1 NC_006370.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 4004514 rho 3123123 rho Photobacterium profundum SS9 transcription termination factor Rho YP_131613.1 4003147 R 298386 CDS YP_131614.1 54310594 3123621 complement(4004606..4004944) 1 NC_006370.1 thioredoxin 4004944 3123621 PBPRA3541 Photobacterium profundum SS9 thioredoxin YP_131614.1 4004606 R 298386 CDS YP_131615.1 54310595 3123896 4005045..4006358 1 NC_006370.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 4006358 3123896 PBPRA3542 Photobacterium profundum SS9 ATP-dependent RNA helicase RhlB YP_131615.1 4005045 D 298386 CDS YP_131616.1 54310596 3123968 4006371..4007864 1 NC_006370.1 catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation; guanosine pentaphosphate phosphohydrolase 4007864 3123968 PBPRA3543 Photobacterium profundum SS9 guanosine pentaphosphate phosphohydrolase YP_131616.1 4006371 D 298386 CDS YP_131617.1 54310597 3123587 complement(4008116..4010158) 1 NC_006370.1 oligopeptidase A 4010158 3123587 PBPRA3544 Photobacterium profundum SS9 oligopeptidase A YP_131617.1 4008116 R 298386 CDS YP_131618.1 54310598 3123563 4011430..4012785 1 NC_006370.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 4012785 3123563 PBPRA3546 Photobacterium profundum SS9 glutathione reductase YP_131618.1 4011430 D 298386 CDS YP_131619.1 54310599 3123780 4013099..4014463 1 NC_006370.1 hypothetical protein 4014463 3123780 PBPRA3547 Photobacterium profundum SS9 hypothetical protein YP_131619.1 4013099 D 298386 CDS YP_131620.1 54310600 3123675 complement(4014632..4015378) 1 NC_006370.1 transposase 4015378 3123675 PBPRA3548 Photobacterium profundum SS9 transposase YP_131620.1 4014632 R 298386 CDS YP_131621.1 54310601 3123633 4015529..4015795 1 NC_006370.1 hypothetical protein 4015795 3123633 PBPRA3549 Photobacterium profundum SS9 hypothetical protein YP_131621.1 4015529 D 298386 CDS YP_131622.1 54310602 3123656 4015831..4016508 1 NC_006370.1 transposase 4016508 3123656 PBPRA3550 Photobacterium profundum SS9 transposase YP_131622.1 4015831 D 298386 CDS YP_131623.1 54310603 3123696 complement(4016497..4017513) 1 NC_006370.1 transposase 4017513 3123696 PBPRA3551 Photobacterium profundum SS9 transposase YP_131623.1 4016497 R 298386 CDS YP_131624.1 54310604 3123630 4017744..4019354 1 NC_006370.1 Y4jO 4019354 3123630 PBPRA3552 Photobacterium profundum SS9 Y4jO YP_131624.1 4017744 D 298386 CDS YP_131625.1 54310605 3123664 4019423..4019893 1 NC_006370.1 transposase and inactivated derivative 4019893 3123664 PBPRA3553 Photobacterium profundum SS9 transposase and inactivated derivative YP_131625.1 4019423 D 298386 CDS YP_131626.1 54310606 3123814 4019895..4020458 1 NC_006370.1 transposase and inactivated derivative 4020458 3123814 PBPRA3554 Photobacterium profundum SS9 transposase and inactivated derivative YP_131626.1 4019895 D 298386 CDS YP_131627.1 54310607 3124529 4038003..4038551 1 NC_006370.1 carbonic anhydrase family 3 4038551 3124529 PBPRA3569 Photobacterium profundum SS9 carbonic anhydrase family 3 YP_131627.1 4038003 D 298386 CDS YP_131628.1 54310608 3124058 complement(4038548..4038811) 1 NC_006370.1 hypothetical protein 4038811 3124058 PBPRA3570 Photobacterium profundum SS9 hypothetical protein YP_131628.1 4038548 R 298386 CDS YP_131629.1 54310609 3124516 complement(4038822..4039673) 1 NC_006370.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 4039673 aroE 3124516 aroE Photobacterium profundum SS9 shikimate 5-dehydrogenase YP_131629.1 4038822 R 298386 CDS YP_131630.1 54310610 3124200 complement(4039734..4040639) 1 NC_006370.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 4040639 3124200 PBPRA3572 Photobacterium profundum SS9 coproporphyrinogen III oxidase YP_131630.1 4039734 R 298386 CDS YP_131631.1 54310611 3124445 complement(4040665..4041243) 1 NC_006370.1 Sua5/YciO/YrdC family protein 4041243 3124445 PBPRA3573 Photobacterium profundum SS9 Sua5/YciO/YrdC family protein YP_131631.1 4040665 R 298386 CDS YP_131632.1 54310612 3124498 complement(4041303..4041908) 1 NC_006370.1 phosphoribosylaminoimidazole carboxylase, catalytic subunit 4041908 3124498 PBPRA3574 Photobacterium profundum SS9 phosphoribosylaminoimidazole carboxylase, catalytic subunit YP_131632.1 4041303 R 298386 CDS YP_131633.1 54310613 3124245 complement(4041887..4042462) 1 NC_006370.1 DNA topoisomerase I-related protein 4042462 3124245 PBPRA3575 Photobacterium profundum SS9 DNA topoisomerase I-related protein YP_131633.1 4041887 R 298386 CDS YP_131634.1 54310614 3124386 complement(4042481..4042954) 1 NC_006370.1 hypothetical protein 4042954 3124386 PBPRA3576 Photobacterium profundum SS9 hypothetical protein YP_131634.1 4042481 R 298386 CDS YP_131635.1 54310615 3124448 complement(4042957..4044054) 1 NC_006370.1 Smf protein 4044054 3124448 PBPRA3577 Photobacterium profundum SS9 Smf protein YP_131635.1 4042957 R 298386 CDS YP_131636.1 54310616 3124320 complement(4044051..4045109) 1 NC_006370.1 hypothetical protein 4045109 3124320 PBPRA3578 Photobacterium profundum SS9 hypothetical protein YP_131636.1 4044051 R 298386 CDS YP_131637.1 54310617 3124360 4045463..4045972 1 NC_006370.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 4045972 def 3124360 def Photobacterium profundum SS9 peptide deformylase YP_131637.1 4045463 D 298386 CDS YP_131638.1 54310618 3124279 4045989..4046933 1 NC_006370.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 4046933 fmt 3124279 fmt Photobacterium profundum SS9 methionyl-tRNA formyltransferase YP_131638.1 4045989 D 298386 CDS YP_131639.1 54310619 3124399 4047004..4048299 1 NC_006370.1 Sun protein 4048299 3124399 PBPRA3581 Photobacterium profundum SS9 Sun protein YP_131639.1 4047004 D 298386 CDS YP_131640.1 54310620 3124518 4048411..4049787 1 NC_006370.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane component 4049787 trkA 3124518 trkA Photobacterium profundum SS9 potassium transporter peripheral membrane component YP_131640.1 4048411 D 298386 CDS YP_131641.1 54310621 3124457 4049791..4051236 1 NC_006370.1 potassium uptake protein TrkH 4051236 3124457 PBPRA3583 Photobacterium profundum SS9 potassium uptake protein TrkH YP_131641.1 4049791 D 298386 CDS YP_131642.1 54310622 3124354 complement(4051376..4052035) 1 NC_006370.1 hemolysin 4052035 3124354 PBPRA3584 Photobacterium profundum SS9 hemolysin YP_131642.1 4051376 R 298386 CDS YP_131643.1 54310623 3124500 complement(4052173..4052961) 1 NC_006370.1 SpoOM-related protein 4052961 3124500 PBPRA3585 Photobacterium profundum SS9 SpoOM-related protein YP_131643.1 4052173 R 298386 CDS YP_131644.1 54310624 3124573 complement(4053107..4053778) 1 NC_006370.1 GntR family transcriptional regulator 4053778 3124573 PBPRA3586 Photobacterium profundum SS9 GntR family transcriptional regulator YP_131644.1 4053107 R 298386 CDS YP_131645.1 54310625 3124608 4054482..4054760 1 NC_006370.1 hypothetical protein 4054760 3124608 PBPRA3587 Photobacterium profundum SS9 hypothetical protein YP_131645.1 4054482 D 298386 CDS YP_131646.1 54310626 3124592 4055012..4056442 1 NC_006370.1 FixG-related protein 4056442 3124592 PBPRA3588 Photobacterium profundum SS9 FixG-related protein YP_131646.1 4055012 D 298386 CDS YP_131647.2 161936278 3124505 4056544..4057530 1 NC_006370.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 4057530 3124505 PBPRA3589 Photobacterium profundum SS9 serine/threonine protein kinase YP_131647.2 4056544 D 298386 CDS YP_131648.1 54310628 3124606 4057615..4058217 1 NC_006370.1 thiol:disulfide interchange protein 4058217 3124606 PBPRA3590 Photobacterium profundum SS9 thiol:disulfide interchange protein YP_131648.1 4057615 D 298386 CDS YP_131649.1 54310629 3124590 4058256..4058744 1 NC_006370.1 hypothetical protein 4058744 3124590 PBPRA3591 Photobacterium profundum SS9 hypothetical protein YP_131649.1 4058256 D 298386 CDS YP_131650.1 54310630 3124591 complement(4058766..4060298) 1 NC_006370.1 ComM-related protein 4060298 3124591 PBPRA3592 Photobacterium profundum SS9 ComM-related protein YP_131650.1 4058766 R 298386 CDS YP_131651.1 54310631 3124586 4060686..4062332 1 NC_006370.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 4062332 3124586 PBPRA3593 Photobacterium profundum SS9 acetolactate synthase 2 catalytic subunit YP_131651.1 4060686 D 298386 CDS YP_131652.1 54310632 3124600 4062602..4063540 1 NC_006370.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 4063540 3124600 PBPRA3594 Photobacterium profundum SS9 branched-chain amino acid aminotransferase YP_131652.1 4062602 D 298386 CDS YP_131653.2 161936277 3124665 4063634..4065475 1 NC_006370.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 4065475 3124665 PBPRA3595 Photobacterium profundum SS9 dihydroxy-acid dehydratase YP_131653.2 4063634 D 298386 CDS YP_131654.1 54310634 3124721 4065481..4067034 1 NC_006370.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 4067034 3124721 PBPRA3596 Photobacterium profundum SS9 threonine dehydratase YP_131654.1 4065481 D 298386 CDS YP_131655.1 54310635 3124636 complement(4067083..4067448) 1 NC_006370.1 transcriptional regulator 4067448 3124636 PBPRA3597 Photobacterium profundum SS9 transcriptional regulator YP_131655.1 4067083 R 298386 CDS YP_131656.1 54310636 3124745 complement(4067694..4068071) 1 NC_006370.1 transcriptional regulator 4068071 3124745 PBPRA3598 Photobacterium profundum SS9 transcriptional regulator YP_131656.1 4067694 R 298386 CDS YP_131657.1 54310637 3124705 complement(4068379..4070211) 1 NC_006370.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 4070211 3124705 PBPRA3599 Photobacterium profundum SS9 glucosamine--fructose-6-phosphate aminotransferase YP_131657.1 4068379 R 298386 CDS YP_131658.1 54310638 3124693 complement(4070230..4071021) 1 NC_006370.1 DeoR family transcriptional regulator 4071021 3124693 PBPRA3600 Photobacterium profundum SS9 DeoR family transcriptional regulator YP_131658.1 4070230 R 298386 CDS YP_131659.1 54310639 3124725 complement(4071214..4072575) 1 NC_006370.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 4072575 glmU 3124725 glmU Photobacterium profundum SS9 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_131659.1 4071214 R 298386 CDS YP_131660.1 54310640 3124597 4073143..4073394 1 NC_006370.1 hypothetical protein 4073394 3124597 PBPRA3602 Photobacterium profundum SS9 hypothetical protein YP_131660.1 4073143 D 298386 CDS YP_131661.1 54310641 3124713 complement(4073652..4074074) 1 NC_006370.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; ATP synthase F0F1 subunit epsilon 4074074 atpC 3124713 atpC Photobacterium profundum SS9 ATP synthase F0F1 subunit epsilon YP_131661.1 4073652 R 298386 CDS YP_131662.1 54310642 3124618 complement(4074092..4075498) 1 NC_006370.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 4075498 3124618 PBPRA3604 Photobacterium profundum SS9 ATP synthase F0F1 subunit beta YP_131662.1 4074092 R 298386 CDS YP_131663.1 54310643 3122306 complement(4075531..4076397) 1 NC_006370.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma 4076397 3122306 PBPRA3605 Photobacterium profundum SS9 ATP synthase F0F1 subunit gamma YP_131663.1 4075531 R 298386 CDS YP_131664.1 54310644 3124674 complement(4076442..4077983) 1 NC_006370.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 4077983 3124674 PBPRA3606 Photobacterium profundum SS9 ATP synthase F0F1 subunit alpha YP_131664.1 4076442 R 298386 CDS YP_131665.1 54310645 3124374 complement(4078000..4078533) 1 NC_006370.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta 4078533 3124374 PBPRA3607 Photobacterium profundum SS9 ATP synthase F0F1 subunit delta YP_131665.1 4078000 R 298386 CDS YP_131666.1 54310646 3124617 complement(4078550..4079020) 1 NC_006370.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; ATP synthase F0F1 subunit B 4079020 3124617 PBPRA3608 Photobacterium profundum SS9 ATP synthase F0F1 subunit B YP_131666.1 4078550 R 298386 CDS YP_131667.1 54310647 3124224 complement(4079097..4079357) 1 NC_006370.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C 4079357 3124224 PBPRA3609 Photobacterium profundum SS9 ATP synthase F0F1 subunit C YP_131667.1 4079097 R 298386 CDS YP_131668.1 54310648 3124613 complement(4079423..4080211) 1 NC_006370.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 4080211 3124613 PBPRA3610 Photobacterium profundum SS9 ATP synthase F0F1 subunit A YP_131668.1 4079423 R 298386 CDS YP_131669.1 54310649 3124325 complement(4080220..4080609) 1 NC_006370.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I 4080609 3124325 PBPRA3611 Photobacterium profundum SS9 F0F1 ATP synthase subunit I YP_131669.1 4080220 R 298386 CDS YP_131670.1 54310650 3124584 complement(4080788..4081681) 1 NC_006370.1 ParB family protein 4081681 3124584 PBPRA3612 Photobacterium profundum SS9 ParB family protein YP_131670.1 4080788 R 298386 CDS YP_131671.1 54310651 3124647 complement(4081691..4082485) 1 NC_006370.1 ParA family protein 4082485 3124647 PBPRA3613 Photobacterium profundum SS9 ParA family protein YP_131671.1 4081691 R 298386 CDS YP_131672.1 54310652 3124296 complement(4082502..4083122) 1 NC_006370.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 4083122 gidB 3124296 gidB Photobacterium profundum SS9 16S rRNA methyltransferase GidB YP_131672.1 4082502 R 298386 CDS YP_131673.1 54310653 3124534 complement(4083132..4085021) 1 NC_006370.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 4085021 3124534 PBPRA3615 Photobacterium profundum SS9 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA YP_131673.1 4083132 R 298386 CDS YP_131674.1 54301681 3121069 469..2475 1 NC_006371.1 translation elongation factors 2475 3121069 PBPRB0001 Photobacterium profundum SS9 translation elongation factors YP_131674.1 469 D 298386 CDS YP_131675.1 54301682 3120004 2805..5087 1 NC_006371.1 hypothetical protein 5087 3120004 PBPRB0002 Photobacterium profundum SS9 hypothetical protein YP_131675.1 2805 D 298386 CDS YP_131676.1 54301683 3120479 complement(5583..8672) 1 NC_006371.1 tetrathionate reductase, subunit A 8672 3120479 PBPRB0003 Photobacterium profundum SS9 tetrathionate reductase, subunit A YP_131676.1 5583 R 298386 CDS YP_131677.1 54301684 3120151 complement(8684..9820) 1 NC_006371.1 tetrathionate reductase complex, subunit C 9820 3120151 PBPRB0004 Photobacterium profundum SS9 tetrathionate reductase complex, subunit C YP_131677.1 8684 R 298386 CDS YP_131678.1 54301685 3119939 10026..10460 1 NC_006371.1 transposase 10460 3119939 PBPRB0005 Photobacterium profundum SS9 transposase YP_131678.1 10026 D 298386 CDS YP_131679.1 54301686 3121897 complement(10515..11183) 1 NC_006371.1 tetrathionate reductase, subunit B 11183 3121897 PBPRB0006 Photobacterium profundum SS9 tetrathionate reductase, subunit B YP_131679.1 10515 R 298386 CDS YP_131680.1 54301687 3121652 11441..13357 1 NC_006371.1 histidine kinase 13357 3121652 PBPRB0007 Photobacterium profundum SS9 histidine kinase YP_131680.1 11441 D 298386 CDS YP_131681.1 54301688 3120144 13373..13966 1 NC_006371.1 tetrathionate reductase complex response regulator 13966 3120144 PBPRB0008 Photobacterium profundum SS9 tetrathionate reductase complex response regulator YP_131681.1 13373 D 298386 CDS YP_131682.1 54301689 3119954 14133..14780 1 NC_006371.1 maltose O-acetyltransferase 14780 3119954 PBPRB0009 Photobacterium profundum SS9 maltose O-acetyltransferase YP_131682.1 14133 D 298386 CDS YP_131683.1 54301690 3119959 complement(14899..15693) 1 NC_006371.1 AraC family transcriptional regulator 15693 3119959 PBPRB0010 Photobacterium profundum SS9 AraC family transcriptional regulator YP_131683.1 14899 R 298386 CDS YP_131684.1 54301691 3120137 15915..16490 1 NC_006371.1 hypothetical protein 16490 3120137 PBPRB0011 Photobacterium profundum SS9 hypothetical protein YP_131684.1 15915 D 298386 CDS YP_131685.1 54301692 3120548 17264..18151 1 NC_006371.1 hypothetical protein 18151 3120548 PBPRB0012 Photobacterium profundum SS9 hypothetical protein YP_131685.1 17264 D 298386 CDS YP_131686.1 54301693 3121786 18413..19069 1 NC_006371.1 transposase 19069 3121786 PBPRB0013 Photobacterium profundum SS9 transposase YP_131686.1 18413 D 298386 CDS YP_131687.1 54301694 3120674 19200..22037 1 NC_006371.1 acyltransferase 22037 3120674 PBPRB0014 Photobacterium profundum SS9 acyltransferase YP_131687.1 19200 D 298386 CDS YP_131688.1 54301695 3121360 22130..22852 1 NC_006371.1 transposase 22852 3121360 PBPRB0015 Photobacterium profundum SS9 transposase YP_131688.1 22130 D 298386 CDS YP_131689.1 54301696 3120708 complement(23171..23641) 1 NC_006371.1 transposase 23641 3120708 PBPRB0016 Photobacterium profundum SS9 transposase YP_131689.1 23171 R 298386 CDS YP_131690.1 54301697 3120342 complement(24090..25724) 1 NC_006371.1 deacylase 25724 3120342 PBPRB0017 Photobacterium profundum SS9 deacylase YP_131690.1 24090 R 298386 CDS YP_131691.1 54301698 3120205 complement(26221..27603) 1 NC_006371.1 alpha-galactosidase (melibiase) 27603 3120205 PBPRB0018 Photobacterium profundum SS9 alpha-galactosidase (melibiase) YP_131691.1 26221 R 298386 CDS YP_131692.1 54301699 3121028 complement(27606..28595) 1 NC_006371.1 AraH,ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 28595 3121028 PBPRB0019 Photobacterium profundum SS9 AraH,ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components YP_131692.1 27606 R 298386 CDS YP_131693.1 54301700 3121012 complement(28595..29350) 1 NC_006371.1 sugar ABC transporter ATPase protein 29350 3121012 PBPRB0020 Photobacterium profundum SS9 sugar ABC transporter ATPase protein YP_131693.1 28595 R 298386 CDS YP_131694.1 54301701 3120117 complement(29350..30363) 1 NC_006371.1 hypothetical protein 30363 3120117 PBPRB0021 Photobacterium profundum SS9 hypothetical protein YP_131694.1 29350 R 298386 CDS YP_131695.1 54301702 3121539 30916..31182 1 NC_006371.1 hypothetical protein 31182 3121539 PBPRB0022 Photobacterium profundum SS9 hypothetical protein YP_131695.1 30916 D 298386 CDS YP_131696.1 54301703 3119967 31218..32363 1 NC_006371.1 transposase 32363 3119967 PBPRB0023 Photobacterium profundum SS9 transposase YP_131696.1 31218 D 298386 CDS YP_131697.1 54301704 3120200 32504..32755 1 NC_006371.1 hypothetical protein 32755 3120200 PBPRB0024 Photobacterium profundum SS9 hypothetical protein YP_131697.1 32504 D 298386 CDS YP_131698.1 54301705 3120386 33436..34137 1 NC_006371.1 response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR 34137 3120386 PBPRB0025 Photobacterium profundum SS9 DNA-binding transcriptional regulator TorR YP_131698.1 33436 D 298386 CDS YP_131699.1 54301706 3121841 34174..37281 1 NC_006371.1 sensor protein TorS 37281 3121841 PBPRB0026 Photobacterium profundum SS9 sensor protein TorS YP_131699.1 34174 D 298386 CDS YP_131700.1 54301707 3120277 37653..38234 1 NC_006371.1 hypothetical protein 38234 3120277 PBPRB0027 Photobacterium profundum SS9 hypothetical protein YP_131700.1 37653 D 298386 CDS YP_131701.1 54301708 3121661 38421..40496 1 NC_006371.1 methyl-accepting chemotaxisprotein 40496 3121661 PBPRB0028 Photobacterium profundum SS9 methyl-accepting chemotaxisprotein YP_131701.1 38421 D 298386 CDS YP_131702.1 54301709 3120691 40752..41087 1 NC_006371.1 hypothetical protein 41087 3120691 PBPRB0029 Photobacterium profundum SS9 hypothetical protein YP_131702.1 40752 D 298386 CDS YP_131703.1 54301710 3121692 41148..42116 1 NC_006371.1 hypothetical protein 42116 3121692 PBPRB0030 Photobacterium profundum SS9 hypothetical protein YP_131703.1 41148 D 298386 CDS YP_131704.1 54301711 3120228 42164..43288 1 NC_006371.1 associated with arginine deiminase pathway genes; probably functions in arginine catabolism; transaminase 43288 3120228 PBPRB0031 Photobacterium profundum SS9 transaminase YP_131704.1 42164 D 298386 CDS YP_131705.1 54301712 3121830 complement(43331..43996) 1 NC_006371.1 hypothetical protein 43996 3121830 PBPRB0032 Photobacterium profundum SS9 hypothetical protein YP_131705.1 43331 R 298386 CDS YP_131706.1 54301713 3120423 complement(44301..45806) 1 NC_006371.1 hypothetical protein 45806 3120423 PBPRB0033 Photobacterium profundum SS9 hypothetical protein YP_131706.1 44301 R 298386 CDS YP_131707.1 54301714 3120206 complement(46151..49243) 1 NC_006371.1 forms a homotetramer; hydrolyzes lactose disaccharide to galactose and glucose; converts lactose to allolactose which is the natural inducer of the lac operon; beta-D-galactosidase 49243 lacZ 3120206 lacZ Photobacterium profundum SS9 beta-D-galactosidase YP_131707.1 46151 R 298386 CDS YP_131708.1 54301715 3120175 49880..50128 1 NC_006371.1 hypothetical protein 50128 3120175 PBPRB0035 Photobacterium profundum SS9 hypothetical protein YP_131708.1 49880 D 298386 CDS YP_131709.1 54301716 3120123 complement(50257..50496) 1 NC_006371.1 cold shock-like protein 50496 3120123 PBPRB0036 Photobacterium profundum SS9 cold shock-like protein YP_131709.1 50257 R 298386 CDS YP_131710.1 54301717 3120487 complement(50503..50745) 1 NC_006371.1 hypothetical protein 50745 3120487 PBPRB0037 Photobacterium profundum SS9 hypothetical protein YP_131710.1 50503 R 298386 CDS YP_131711.1 54301718 3120811 50807..51694 1 NC_006371.1 hypothetical protein 51694 3120811 PBPRB0038 Photobacterium profundum SS9 hypothetical protein YP_131711.1 50807 D 298386 CDS YP_131712.1 54301719 3120257 complement(51741..52121) 1 NC_006371.1 hypothetical protein 52121 3120257 PBPRB0039 Photobacterium profundum SS9 hypothetical protein YP_131712.1 51741 R 298386 CDS YP_131713.1 54301720 3120234 complement(52150..53313) 1 NC_006371.1 hypothetical protein 53313 3120234 PBPRB0040 Photobacterium profundum SS9 hypothetical protein YP_131713.1 52150 R 298386 CDS YP_131714.1 54301721 3121813 complement(53598..53906) 1 NC_006371.1 hypothetical protein 53906 3121813 PBPRB0041 Photobacterium profundum SS9 hypothetical protein YP_131714.1 53598 R 298386 CDS YP_131715.1 54301722 3121191 complement(54129..54737) 1 NC_006371.1 transcriptional regulator 54737 3121191 PBPRB0042 Photobacterium profundum SS9 transcriptional regulator YP_131715.1 54129 R 298386 CDS YP_131716.1 54301723 3121882 54858..56009 1 NC_006371.1 hypothetical protein 56009 3121882 PBPRB0043 Photobacterium profundum SS9 hypothetical protein YP_131716.1 54858 D 298386 CDS YP_131717.1 54301724 3121928 56111..56539 1 NC_006371.1 hypothetical protein 56539 3121928 PBPRB0044 Photobacterium profundum SS9 hypothetical protein YP_131717.1 56111 D 298386 CDS YP_131718.1 54301725 3119957 complement(56801..57742) 1 NC_006371.1 hypothetical protein 57742 3119957 PBPRB0045 Photobacterium profundum SS9 hypothetical protein YP_131718.1 56801 R 298386 CDS YP_131719.1 54301726 3121687 57895..59382 1 NC_006371.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 59382 3121687 PBPRB0046 Photobacterium profundum SS9 aspartate ammonia-lyase YP_131719.1 57895 D 298386 CDS YP_131720.1 54301727 3121686 59382..60740 1 NC_006371.1 hypothetical protein 60740 3121686 PBPRB0047 Photobacterium profundum SS9 hypothetical protein YP_131720.1 59382 D 298386 CDS YP_131721.1 54301728 3119958 60766..62070 1 NC_006371.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter 62070 3119958 PBPRB0048 Photobacterium profundum SS9 anaerobic C4-dicarboxylate transporter YP_131721.1 60766 D 298386 CDS YP_131722.1 54301729 3120190 62274..63494 1 NC_006371.1 hypothetical protein 63494 3120190 PBPRB0049 Photobacterium profundum SS9 hypothetical protein YP_131722.1 62274 D 298386 CDS YP_131723.1 54301730 3121182 63815..65158 1 NC_006371.1 methylamine utilization protein 65158 3121182 PBPRB0050 Photobacterium profundum SS9 methylamine utilization protein YP_131723.1 63815 D 298386 CDS YP_131724.1 54301731 3120453 complement(65219..65842) 1 NC_006371.1 hypothetical protein 65842 3120453 PBPRB0051 Photobacterium profundum SS9 hypothetical protein YP_131724.1 65219 R 298386 CDS YP_131725.1 54301732 3121791 complement(65854..66270) 1 NC_006371.1 hypothetical protein 66270 3121791 PBPRB0052 Photobacterium profundum SS9 hypothetical protein YP_131725.1 65854 R 298386 CDS YP_131726.1 54301733 3120685 complement(66302..66937) 1 NC_006371.1 hypothetical protein 66937 3120685 PBPRB0053 Photobacterium profundum SS9 hypothetical protein YP_131726.1 66302 R 298386 CDS YP_131727.1 54301734 3121337 complement(66982..68007) 1 NC_006371.1 potassium channel related protein 68007 3121337 PBPRB0054 Photobacterium profundum SS9 potassium channel related protein YP_131727.1 66982 R 298386 CDS YP_131728.1 54301735 3120611 complement(68059..68745) 1 NC_006371.1 hypothetical protein 68745 3120611 PBPRB0055 Photobacterium profundum SS9 hypothetical protein YP_131728.1 68059 R 298386 CDS YP_131729.1 54301736 3120429 complement(68745..69143) 1 NC_006371.1 hypothetical protein 69143 3120429 PBPRB0056 Photobacterium profundum SS9 hypothetical protein YP_131729.1 68745 R 298386 CDS YP_131730.1 54301737 3120703 complement(69234..69482) 1 NC_006371.1 hypothetical protein 69482 3120703 PBPRB0057 Photobacterium profundum SS9 hypothetical protein YP_131730.1 69234 R 298386 CDS YP_131731.1 54301738 3121712 complement(69616..71697) 1 NC_006371.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 71697 3121712 PBPRB0058 Photobacterium profundum SS9 transketolase YP_131731.1 69616 R 298386 CDS YP_131732.1 54301739 3120437 complement(71705..72655) 1 NC_006371.1 Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase B 72655 3120437 PBPRB0059 Photobacterium profundum SS9 transaldolase B YP_131732.1 71705 R 298386 CDS YP_131733.1 54301740 3121696 complement(73110..76025) 1 NC_006371.1 BaeS, Signal transduction histidine kinase 76025 3121696 PBPRB0060 Photobacterium profundum SS9 BaeS, Signal transduction histidine kinase YP_131733.1 73110 R 298386 CDS YP_131734.1 54301741 3121793 complement(76296..77786) 1 NC_006371.1 hypothetical protein 77786 3121793 PBPRB0061 Photobacterium profundum SS9 hypothetical protein YP_131734.1 76296 R 298386 CDS YP_131735.1 54301742 3121238 complement(78188..78898) 1 NC_006371.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 78898 3121238 PBPRB0062 Photobacterium profundum SS9 purine nucleoside phosphorylase YP_131735.1 78188 R 298386 CDS YP_131736.1 54301743 3120070 complement(80266..81636) 1 NC_006371.1 hypothetical protein 81636 3120070 PBPRB0063 Photobacterium profundum SS9 hypothetical protein YP_131736.1 80266 R 298386 CDS YP_131737.1 54301744 3121188 81829..82338 1 NC_006371.1 hypothetical protein 82338 3121188 PBPRB0064 Photobacterium profundum SS9 hypothetical protein YP_131737.1 81829 D 298386 CDS YP_131738.1 54301745 3121247 complement(82581..82994) 1 NC_006371.1 hypothetical protein 82994 3121247 PBPRB0065 Photobacterium profundum SS9 hypothetical protein YP_131738.1 82581 R 298386 CDS YP_131739.1 54301746 3121138 83354..84661 1 NC_006371.1 hypothetical protein 84661 3121138 PBPRB0066 Photobacterium profundum SS9 hypothetical protein YP_131739.1 83354 D 298386 CDS YP_131740.1 54301747 3121826 complement(84775..85431) 1 NC_006371.1 phosphatase/phosphohexomutase 85431 3121826 PBPRB0067 Photobacterium profundum SS9 phosphatase/phosphohexomutase YP_131740.1 84775 R 298386 CDS YP_131741.1 54301748 3120082 85927..86622 1 NC_006371.1 chloramphenicol acetyltransferase 86622 3120082 PBPRB0068 Photobacterium profundum SS9 chloramphenicol acetyltransferase YP_131741.1 85927 D 298386 CDS YP_131742.1 54301749 3121868 complement(86671..87879) 1 NC_006371.1 transposase 87879 3121868 PBPRB0069 Photobacterium profundum SS9 transposase YP_131742.1 86671 R 298386 CDS YP_131743.1 54301750 3121175 complement(88149..90203) 1 NC_006371.1 penicillin-binding protein 2 90203 3121175 PBPRB0070 Photobacterium profundum SS9 penicillin-binding protein 2 YP_131743.1 88149 R 298386 CDS YP_131744.1 54301751 3121896 complement(90507..91436) 1 NC_006371.1 hypothetical protein 91436 3121896 PBPRB0071 Photobacterium profundum SS9 hypothetical protein YP_131744.1 90507 R 298386 CDS YP_131745.1 54301752 3121365 91541..92434 1 NC_006371.1 transcriptional regulator 92434 3121365 PBPRB0072 Photobacterium profundum SS9 transcriptional regulator YP_131745.1 91541 D 298386 CDS YP_131746.1 54301753 3121808 92524..93474 1 NC_006371.1 hypothetical protein 93474 3121808 PBPRB0073 Photobacterium profundum SS9 hypothetical protein YP_131746.1 92524 D 298386 CDS YP_131747.1 54301754 3120656 93922..95172 1 NC_006371.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 95172 3120656 PBPRB0074 Photobacterium profundum SS9 acetate kinase YP_131747.1 93922 D 298386 CDS YP_131748.1 54301755 3121938 complement(95429..96526) 1 NC_006371.1 hypothetical protein 96526 3121938 PBPRB0075 Photobacterium profundum SS9 hypothetical protein YP_131748.1 95429 R 298386 CDS YP_131749.1 54301756 3121382 complement(97101..98405) 1 NC_006371.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 98405 3121382 PBPRB0076 Photobacterium profundum SS9 anaerobic C4-dicarboxylate transporter YP_131749.1 97101 R 298386 CDS YP_131750.1 54301757 3121020 complement(99275..100093) 1 NC_006371.1 transcriptional regulator 100093 3121020 PBPRB0077 Photobacterium profundum SS9 transcriptional regulator YP_131750.1 99275 R 298386 CDS YP_131751.1 54301758 3120274 complement(100104..100709) 1 NC_006371.1 efflux family protein 100709 3120274 PBPRB0078 Photobacterium profundum SS9 efflux family protein YP_131751.1 100104 R 298386 CDS YP_131752.1 54301759 3121013 complement(101163..103799) 1 NC_006371.1 biotin sulfoxide reductase (bisC) 103799 3121013 PBPRB0079 Photobacterium profundum SS9 biotin sulfoxide reductase (bisC) YP_131752.1 101163 R 298386 CDS YP_131753.1 54301760 3120670 complement(104246..104713) 1 NC_006371.1 regulatory helix-turn-helix protein 104713 3120670 PBPRB0080 Photobacterium profundum SS9 regulatory helix-turn-helix protein YP_131753.1 104246 R 298386 CDS YP_131754.1 54301761 3120091 104761..105009 1 NC_006371.1 hypothetical protein 105009 3120091 PBPRB0081 Photobacterium profundum SS9 hypothetical protein YP_131754.1 104761 D 298386 CDS YP_131755.1 54301762 3121471 complement(105107..106072) 1 NC_006371.1 hypothetical protein 106072 3121471 PBPRB0082 Photobacterium profundum SS9 hypothetical protein YP_131755.1 105107 R 298386 CDS YP_131756.1 54301763 3121641 complement(107296..107625) 1 NC_006371.1 hypothetical protein 107625 3121641 PBPRB0083 Photobacterium profundum SS9 hypothetical protein YP_131756.1 107296 R 298386 CDS YP_131757.1 54301764 3120020 complement(107635..108198) 1 NC_006371.1 transposase 108198 3120020 PBPRB0084 Photobacterium profundum SS9 transposase YP_131757.1 107635 R 298386 CDS YP_131758.1 54301765 3120328 complement(108200..108670) 1 NC_006371.1 transposase 108670 3120328 PBPRB0085 Photobacterium profundum SS9 transposase YP_131758.1 108200 R 298386 CDS YP_131759.1 54301766 3120366 complement(108916..109278) 1 NC_006371.1 hypothetical protein 109278 3120366 PBPRB0086 Photobacterium profundum SS9 hypothetical protein YP_131759.1 108916 R 298386 CDS YP_131760.1 54301767 3120619 109739..110044 1 NC_006371.1 hypothetical protein 110044 3120619 PBPRB0087 Photobacterium profundum SS9 hypothetical protein YP_131760.1 109739 D 298386 CDS YP_131761.1 54301768 3120198 complement(110124..110513) 1 NC_006371.1 universal stress protein A 110513 3120198 PBPRB0088 Photobacterium profundum SS9 universal stress protein A YP_131761.1 110124 R 298386 CDS YP_131762.1 54301769 3119927 complement(111285..111947) 1 NC_006371.1 prophage MuSo1, Cro/CI family transcriptional regulator 111947 3119927 PBPRB0089 Photobacterium profundum SS9 prophage MuSo1, Cro/CI family transcriptional regulator YP_131762.1 111285 R 298386 CDS YP_131763.1 54301770 3120086 113365..113700 1 NC_006371.1 bacteriophage transcriptional regulator 113700 3120086 PBPRB0090 Photobacterium profundum SS9 bacteriophage transcriptional regulator YP_131763.1 113365 D 298386 CDS YP_131764.1 54301771 3120075 113961..114473 1 NC_006371.1 hypothetical protein 114473 3120075 PBPRB0091 Photobacterium profundum SS9 hypothetical protein YP_131764.1 113961 D 298386 CDS YP_131765.1 54301772 3119964 complement(114535..114834) 1 NC_006371.1 hypothetical protein 114834 3119964 PBPRB0092 Photobacterium profundum SS9 hypothetical protein YP_131765.1 114535 R 298386 CDS YP_131766.1 54301773 3119953 complement(115057..115482) 1 NC_006371.1 hypothetical protein 115482 3119953 PBPRB0093 Photobacterium profundum SS9 hypothetical protein YP_131766.1 115057 R 298386 CDS YP_131767.1 54301774 3120302 115844..117409 1 NC_006371.1 hypothetical protein 117409 3120302 PBPRB0094 Photobacterium profundum SS9 hypothetical protein YP_131767.1 115844 D 298386 CDS YP_131768.1 54301775 3121875 117478..117744 1 NC_006371.1 hypothetical protein 117744 3121875 PBPRB0095 Photobacterium profundum SS9 hypothetical protein YP_131768.1 117478 D 298386 CDS YP_131769.1 54301776 3120194 117817..118251 1 NC_006371.1 transposase 118251 3120194 PBPRB0096 Photobacterium profundum SS9 transposase YP_131769.1 117817 D 298386 CDS YP_131770.1 54301777 3121357 118489..118797 1 NC_006371.1 hypothetical protein 118797 3121357 PBPRB0097 Photobacterium profundum SS9 hypothetical protein YP_131770.1 118489 D 298386 CDS YP_131771.1 54301778 3121264 118937..119629 1 NC_006371.1 hypothetical protein 119629 3121264 PBPRB0098 Photobacterium profundum SS9 hypothetical protein YP_131771.1 118937 D 298386 CDS YP_131772.1 54301779 3120071 120024..121232 1 NC_006371.1 ISSod3 transposase 121232 3120071 PBPRB0099 Photobacterium profundum SS9 ISSod3 transposase YP_131772.1 120024 D 298386 CDS YP_131773.1 54301780 3121891 121597..123603 1 NC_006371.1 methyl-accepting chemotaxis protein 123603 3121891 PBPRB0100 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_131773.1 121597 D 298386 CDS YP_131774.1 54301781 3121289 complement(123789..124532) 1 NC_006371.1 hypothetical protein 124532 3121289 PBPRB0101 Photobacterium profundum SS9 hypothetical protein YP_131774.1 123789 R 298386 CDS YP_131775.1 54301782 3121703 124719..125720 1 NC_006371.1 hypothetical protein 125720 3121703 PBPRB0102 Photobacterium profundum SS9 hypothetical protein YP_131775.1 124719 D 298386 CDS YP_131776.1 54301783 3121401 126041..126778 1 NC_006371.1 hypothetical protein 126778 3121401 PBPRB0103 Photobacterium profundum SS9 hypothetical protein YP_131776.1 126041 D 298386 CDS YP_131777.1 54301784 3121162 complement(128100..129326) 1 NC_006371.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 129326 3121162 PBPRB0104 Photobacterium profundum SS9 3-oxoacyl-ACP synthase YP_131777.1 128100 R 298386 CDS YP_131778.1 54301785 3121848 complement(129323..130048) 1 NC_006371.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 130048 fabG 3121848 fabG Photobacterium profundum SS9 3-ketoacyl-ACP reductase YP_131778.1 129323 R 298386 CDS YP_131779.1 54301786 3121934 complement(130045..130536) 1 NC_006371.1 beta-hydroxydecanoyl-ACP dehydrase 130536 3121934 PBPRB0106 Photobacterium profundum SS9 beta-hydroxydecanoyl-ACP dehydrase YP_131779.1 130045 R 298386 CDS YP_131780.1 54301787 3120967 complement(130677..131792) 1 NC_006371.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 131792 3120967 PBPRB0107 Photobacterium profundum SS9 3-oxoacyl-ACP synthase YP_131780.1 130677 R 298386 CDS YP_131781.1 54301788 3121922 complement(131804..132430) 1 NC_006371.1 hypothetical protein 132430 3121922 PBPRB0108 Photobacterium profundum SS9 hypothetical protein YP_131781.1 131804 R 298386 CDS YP_131782.1 54301789 3119974 complement(132427..134823) 1 NC_006371.1 hypothetical protein 134823 3119974 PBPRB0109 Photobacterium profundum SS9 hypothetical protein YP_131782.1 132427 R 298386 CDS YP_131783.1 54301790 3119956 complement(134807..135493) 1 NC_006371.1 hypothetical protein 135493 3119956 PBPRB0110 Photobacterium profundum SS9 hypothetical protein YP_131783.1 134807 R 298386 CDS YP_131784.1 54301791 3120253 complement(135477..135914) 1 NC_006371.1 hypothetical protein 135914 3120253 PBPRB0111 Photobacterium profundum SS9 hypothetical protein YP_131784.1 135477 R 298386 CDS YP_131785.1 54301792 3120531 complement(135959..137515) 1 NC_006371.1 histidine ammonia-lyase protein 137515 3120531 PBPRB0112 Photobacterium profundum SS9 histidine ammonia-lyase protein YP_131785.1 135959 R 298386 CDS YP_131786.1 54301793 3121700 complement(137493..139181) 1 NC_006371.1 hypothetical protein 139181 3121700 PBPRB0113 Photobacterium profundum SS9 hypothetical protein YP_131786.1 137493 R 298386 CDS YP_131787.1 54301794 3120396 complement(139181..139531) 1 NC_006371.1 3-hydroxylacyl-ACP dehydratase 139531 3120396 PBPRB0114 Photobacterium profundum SS9 3-hydroxylacyl-ACP dehydratase YP_131787.1 139181 R 298386 CDS YP_131788.1 54301795 3121433 complement(139556..141010) 1 NC_006371.1 acyl-CoA synthetase 141010 3121433 PBPRB0115 Photobacterium profundum SS9 acyl-CoA synthetase YP_131788.1 139556 R 298386 CDS YP_131789.1 54301796 3120603 complement(141017..141580) 1 NC_006371.1 hypothetical protein 141580 3120603 PBPRB0116 Photobacterium profundum SS9 hypothetical protein YP_131789.1 141017 R 298386 CDS YP_131790.1 54301797 3120094 complement(141580..141837) 1 NC_006371.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 141837 3120094 PBPRB0117 Photobacterium profundum SS9 acyl carrier protein YP_131790.1 141580 R 298386 CDS YP_131791.1 54301798 3120043 complement(141902..142159) 1 NC_006371.1 acyl carrier protein 142159 3120043 PBPRB0118 Photobacterium profundum SS9 acyl carrier protein YP_131791.1 141902 R 298386 CDS YP_131792.1 54301799 3121803 complement(142190..142981) 1 NC_006371.1 phospholipid biosynthesis acyltransferase 142981 3121803 PBPRB0119 Photobacterium profundum SS9 phospholipid biosynthesis acyltransferase YP_131792.1 142190 R 298386 CDS YP_131793.1 54301800 3120491 complement(142986..143738) 1 NC_006371.1 hypothetical protein 143738 3120491 PBPRB0120 Photobacterium profundum SS9 hypothetical protein YP_131793.1 142986 R 298386 CDS YP_131794.1 54301801 3120047 143810..144286 1 NC_006371.1 lipoprotein 144286 3120047 PBPRB0121 Photobacterium profundum SS9 lipoprotein YP_131794.1 143810 D 298386 CDS YP_131795.1 54301802 3121637 144706..145818 1 NC_006371.1 O-methyltransferase 145818 3121637 PBPRB0122 Photobacterium profundum SS9 O-methyltransferase YP_131795.1 144706 D 298386 CDS YP_131796.1 54301803 3120715 complement(145923..146798) 1 NC_006371.1 hypothetical protein 146798 3120715 PBPRB0123 Photobacterium profundum SS9 hypothetical protein YP_131796.1 145923 R 298386 CDS YP_131797.1 54301804 3120551 147154..148410 1 NC_006371.1 oxidoreductase protein 148410 3120551 PBPRB0124 Photobacterium profundum SS9 oxidoreductase protein YP_131797.1 147154 D 298386 CDS YP_131798.1 54301805 3120397 148812..149468 1 NC_006371.1 hypothetical protein 149468 3120397 PBPRB0125 Photobacterium profundum SS9 hypothetical protein YP_131798.1 148812 D 298386 CDS YP_131799.1 54301806 3120667 complement(149548..149772) 1 NC_006371.1 hypothetical protein 149772 3120667 PBPRB0126 Photobacterium profundum SS9 hypothetical protein YP_131799.1 149548 R 298386 CDS YP_131800.1 54301807 3120334 149916..150812 1 NC_006371.1 permease 150812 3120334 PBPRB0127 Photobacterium profundum SS9 permease YP_131800.1 149916 D 298386 CDS YP_131801.1 54301808 3120324 complement(150948..151772) 1 NC_006371.1 hypothetical protein 151772 3120324 PBPRB0128 Photobacterium profundum SS9 hypothetical protein YP_131801.1 150948 R 298386 CDS YP_131802.1 54301809 3121226 152308..152706 1 NC_006371.1 hypothetical protein 152706 3121226 PBPRB0129 Photobacterium profundum SS9 hypothetical protein YP_131802.1 152308 D 298386 CDS YP_131803.1 54301810 3121655 152708..153475 1 NC_006371.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 153475 3121655 PBPRB0130 Photobacterium profundum SS9 ATP synthase F0F1 subunit A YP_131803.1 152708 D 298386 CDS YP_131804.2 161936353 3121656 153564..153800 1 NC_006371.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C 153800 3121656 PBPRB0131 Photobacterium profundum SS9 ATP synthase F0F1 subunit C YP_131804.2 153564 D 298386 CDS YP_131805.1 54301812 3121415 153885..154289 1 NC_006371.1 ATP synthase subunit B 154289 3121415 PBPRB0132 Photobacterium profundum SS9 ATP synthase subunit B YP_131805.1 153885 D 298386 CDS YP_131806.1 54301813 3119951 154369..154917 1 NC_006371.1 ATP synthase F1 subunit delta 154917 3119951 PBPRB0133 Photobacterium profundum SS9 ATP synthase F1 subunit delta YP_131806.1 154369 D 298386 CDS YP_131807.1 54301814 3120449 154930..156471 1 NC_006371.1 produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 156471 3120449 PBPRB0134 Photobacterium profundum SS9 ATP synthase F0F1 subunit alpha YP_131807.1 154930 D 298386 CDS YP_131808.1 54301815 3120286 156546..157421 1 NC_006371.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma 157421 3120286 PBPRB0135 Photobacterium profundum SS9 ATP synthase F0F1 subunit gamma YP_131808.1 156546 D 298386 CDS YP_131809.1 54301816 3120960 157443..158828 1 NC_006371.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 158828 3120960 PBPRB0136 Photobacterium profundum SS9 ATP synthase F0F1 subunit beta YP_131809.1 157443 D 298386 CDS YP_131810.1 54301817 3120678 158844..159287 1 NC_006371.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; ATP synthase F0F1 subunit epsilon 159287 atpC 3120678 atpC Photobacterium profundum SS9 ATP synthase F0F1 subunit epsilon YP_131810.1 158844 D 298386 CDS YP_131811.1 54301818 3120718 complement(159605..160333) 1 NC_006371.1 hypothetical protein 160333 3120718 PBPRB0138 Photobacterium profundum SS9 hypothetical protein YP_131811.1 159605 R 298386 CDS YP_131812.1 54301819 3120430 complement(160373..161935) 1 NC_006371.1 sulfatase 161935 3120430 PBPRB0139 Photobacterium profundum SS9 sulfatase YP_131812.1 160373 R 298386 CDS YP_131813.1 54301820 3121406 162384..163160 1 NC_006371.1 DeoR family transcriptional regulator 163160 3121406 PBPRB0140 Photobacterium profundum SS9 DeoR family transcriptional regulator YP_131813.1 162384 D 298386 CDS YP_131814.1 54301821 3120910 163209..164495 1 NC_006371.1 tagatose 6-phosphate kinase 164495 3120910 PBPRB0141 Photobacterium profundum SS9 tagatose 6-phosphate kinase YP_131814.1 163209 D 298386 CDS YP_131815.1 54301822 3121864 164506..165669 1 NC_006371.1 phosphosugar isomerase 165669 3121864 PBPRB0142 Photobacterium profundum SS9 phosphosugar isomerase YP_131815.1 164506 D 298386 CDS YP_131816.1 54301823 3120088 165695..166195 1 NC_006371.1 PTS transport protein, component 2 166195 3120088 PBPRB0143 Photobacterium profundum SS9 PTS transport protein, component 2 YP_131816.1 165695 D 298386 CDS YP_131817.1 54301824 3121685 166231..166995 1 NC_006371.1 permease protein 166995 3121685 PBPRB0144 Photobacterium profundum SS9 permease protein YP_131817.1 166231 D 298386 CDS YP_131818.1 54301825 3121678 166985..167878 1 NC_006371.1 PTS permease protein 167878 3121678 PBPRB0145 Photobacterium profundum SS9 PTS permease protein YP_131818.1 166985 D 298386 CDS YP_131819.1 54301826 3120333 167938..168381 1 NC_006371.1 PTS permease protein 168381 3120333 PBPRB0146 Photobacterium profundum SS9 PTS permease protein YP_131819.1 167938 D 298386 CDS YP_131820.1 54301827 3120002 168384..169535 1 NC_006371.1 N-acetylglucosamine-6-phosphatedeacetylase 169535 3120002 PBPRB0147 Photobacterium profundum SS9 N-acetylglucosamine-6-phosphatedeacetylase YP_131820.1 168384 D 298386 CDS YP_131821.1 54301828 3119944 169557..170417 1 NC_006371.1 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; 5-keto-4-deoxyuronate isomerase 170417 3119944 PBPRB0148 Photobacterium profundum SS9 5-keto-4-deoxyuronate isomerase YP_131821.1 169557 D 298386 CDS YP_131822.1 54301829 3119970 170447..171268 1 NC_006371.1 catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; 2-deoxy-D-gluconate 3-dehydrogenase 171268 3119970 PBPRB0149 Photobacterium profundum SS9 2-deoxy-D-gluconate 3-dehydrogenase YP_131822.1 170447 D 298386 CDS YP_131823.1 54301830 3121680 171279..172328 1 NC_006371.1 hypothetical protein 172328 3121680 PBPRB0150 Photobacterium profundum SS9 hypothetical protein YP_131823.1 171279 D 298386 CDS YP_131824.1 54301831 3121738 172430..173155 1 NC_006371.1 hypothetical protein 173155 3121738 PBPRB0151 Photobacterium profundum SS9 hypothetical protein YP_131824.1 172430 D 298386 CDS YP_131825.1 54301832 3121728 173251..173769 1 NC_006371.1 hypothetical protein 173769 3121728 PBPRB0152 Photobacterium profundum SS9 hypothetical protein YP_131825.1 173251 D 298386 CDS YP_131826.1 54301833 3121859 complement(173871..176957) 1 NC_006371.1 chondroitinase 176957 3121859 PBPRB0153 Photobacterium profundum SS9 chondroitinase YP_131826.1 173871 R 298386 CDS YP_131827.1 54301834 3121522 177286..178563 1 NC_006371.1 arylsulfatase regulator 178563 3121522 PBPRB0154 Photobacterium profundum SS9 arylsulfatase regulator YP_131827.1 177286 D 298386 CDS YP_131828.1 54301835 3120337 178589..180196 1 NC_006371.1 sulfatase 180196 3120337 PBPRB0155 Photobacterium profundum SS9 sulfatase YP_131828.1 178589 D 298386 CDS YP_131829.1 54301836 3120392 180256..181749 1 NC_006371.1 hypothetical protein 181749 3120392 PBPRB0156 Photobacterium profundum SS9 hypothetical protein YP_131829.1 180256 D 298386 CDS YP_131830.2 161936352 3121143 181858..182712 1 NC_006371.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; tagatose-bisphosphate aldolase 182712 gatY 3121143 gatY Photobacterium profundum SS9 tagatose-bisphosphate aldolase YP_131830.2 181858 D 298386 CDS YP_131831.1 54301838 3120758 182755..183828 1 NC_006371.1 2-dehydro-3-deoxygluconokinase 183828 3120758 PBPRB0158 Photobacterium profundum SS9 2-dehydro-3-deoxygluconokinase YP_131831.1 182755 D 298386 CDS YP_131832.1 54301839 3121553 183821..184465 1 NC_006371.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 184465 3121553 PBPRB0159 Photobacterium profundum SS9 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_131832.1 183821 D 298386 CDS YP_131833.1 54301840 3120127 184476..185063 1 NC_006371.1 ThiJ/PfpI family thiamine biogenesis protein 185063 3120127 PBPRB0160 Photobacterium profundum SS9 ThiJ/PfpI family thiamine biogenesis protein YP_131833.1 184476 D 298386 CDS YP_131834.1 54301841 3121596 complement(185226..185579) 1 NC_006371.1 hypothetical protein 185579 3121596 PBPRB0161 Photobacterium profundum SS9 hypothetical protein YP_131834.1 185226 R 298386 CDS YP_131835.1 54301842 3120590 complement(185733..186242) 1 NC_006371.1 acetyltransferase 186242 3120590 PBPRB0162 Photobacterium profundum SS9 acetyltransferase YP_131835.1 185733 R 298386 CDS YP_131836.1 54301843 3121440 complement(186657..187184) 1 NC_006371.1 hypothetical protein 187184 3121440 PBPRB0163 Photobacterium profundum SS9 hypothetical protein YP_131836.1 186657 R 298386 CDS YP_131837.1 54301844 3121390 187430..187924 1 NC_006371.1 hypothetical protein 187924 3121390 PBPRB0164 Photobacterium profundum SS9 hypothetical protein YP_131837.1 187430 D 298386 CDS YP_131838.1 54301845 3121720 187997..188431 1 NC_006371.1 transposase 188431 3121720 PBPRB0165 Photobacterium profundum SS9 transposase YP_131838.1 187997 D 298386 CDS YP_131839.1 54301846 3121491 188512..189183 1 NC_006371.1 hypothetical protein 189183 3121491 PBPRB0166 Photobacterium profundum SS9 hypothetical protein YP_131839.1 188512 D 298386 CDS YP_131840.1 54301847 3120632 complement(189364..189714) 1 NC_006371.1 hypothetical protein 189714 3120632 PBPRB0167 Photobacterium profundum SS9 hypothetical protein YP_131840.1 189364 R 298386 CDS YP_131841.1 54301848 3120113 complement(189723..190274) 1 NC_006371.1 hypothetical protein 190274 3120113 PBPRB0168 Photobacterium profundum SS9 hypothetical protein YP_131841.1 189723 R 298386 CDS YP_131842.1 54301849 3120406 190367..191260 1 NC_006371.1 hypothetical protein 191260 3120406 PBPRB0169 Photobacterium profundum SS9 hypothetical protein YP_131842.1 190367 D 298386 CDS YP_131843.1 54301850 3120579 complement(191995..192297) 1 NC_006371.1 hypothetical protein 192297 3120579 PBPRB0170 Photobacterium profundum SS9 hypothetical protein YP_131843.1 191995 R 298386 CDS YP_131844.1 54301851 3121850 complement(192369..192794) 1 NC_006371.1 universal stress protein A 192794 3121850 PBPRB0171 Photobacterium profundum SS9 universal stress protein A YP_131844.1 192369 R 298386 CDS YP_131845.1 54301852 3120000 complement(193212..194126) 1 NC_006371.1 hypothetical protein 194126 3120000 PBPRB0172 Photobacterium profundum SS9 hypothetical protein YP_131845.1 193212 R 298386 CDS YP_131846.1 54301853 3120097 194494..195399 1 NC_006371.1 acetyltransferase 195399 3120097 PBPRB0173 Photobacterium profundum SS9 acetyltransferase YP_131846.1 194494 D 298386 CDS YP_131847.1 54301854 3121854 complement(195855..196100) 1 NC_006371.1 hypothetical protein 196100 3121854 PBPRB0174 Photobacterium profundum SS9 hypothetical protein YP_131847.1 195855 R 298386 CDS YP_131848.1 54301855 3120750 196365..197414 1 NC_006371.1 periplasmic solute-bindingprotein 197414 3120750 PBPRB0175 Photobacterium profundum SS9 periplasmic solute-bindingprotein YP_131848.1 196365 D 298386 CDS YP_131849.1 54301856 3120428 197424..198254 1 NC_006371.1 hypothetical protein 198254 3120428 PBPRB0176 Photobacterium profundum SS9 hypothetical protein YP_131849.1 197424 D 298386 CDS YP_131850.1 54301857 3119941 198251..199174 1 NC_006371.1 permease of ABC transporter 199174 3119941 PBPRB0177 Photobacterium profundum SS9 permease of ABC transporter YP_131850.1 198251 D 298386 CDS YP_131851.1 54301858 3121670 199161..199952 1 NC_006371.1 permease of ABC transporter 199952 3121670 PBPRB0178 Photobacterium profundum SS9 permease of ABC transporter YP_131851.1 199161 D 298386 CDS YP_131852.1 54301859 3121183 199973..201022 1 NC_006371.1 ATP-binding component of ABC transporter 201022 3121183 PBPRB0179 Photobacterium profundum SS9 ATP-binding component of ABC transporter YP_131852.1 199973 D 298386 CDS YP_131853.1 54301860 3120968 complement(201434..202429) 1 NC_006371.1 hypothetical protein 202429 3120968 PBPRB0180 Photobacterium profundum SS9 hypothetical protein YP_131853.1 201434 R 298386 CDS YP_131854.1 54301861 3121816 complement(202460..203701) 1 NC_006371.1 hypothetical protein 203701 3121816 PBPRB0181 Photobacterium profundum SS9 hypothetical protein YP_131854.1 202460 R 298386 CDS YP_131855.1 54301862 3120177 complement(203706..204119) 1 NC_006371.1 hypothetical protein 204119 3120177 PBPRB0182 Photobacterium profundum SS9 hypothetical protein YP_131855.1 203706 R 298386 CDS YP_131856.1 54301863 3120665 204463..205194 1 NC_006371.1 hypothetical protein 205194 3120665 PBPRB0183 Photobacterium profundum SS9 hypothetical protein YP_131856.1 204463 D 298386 CDS YP_131857.1 54301864 3121299 205318..205629 1 NC_006371.1 hypothetical protein 205629 3121299 PBPRB0184 Photobacterium profundum SS9 hypothetical protein YP_131857.1 205318 D 298386 CDS YP_131858.1 54301865 3120019 complement(205648..206553) 1 NC_006371.1 transposase 206553 3120019 PBPRB0185 Photobacterium profundum SS9 transposase YP_131858.1 205648 R 298386 CDS YP_131859.1 54301866 3121684 complement(206594..207187) 1 NC_006371.1 hypothetical protein 207187 3121684 PBPRB0186 Photobacterium profundum SS9 hypothetical protein YP_131859.1 206594 R 298386 CDS YP_131860.1 54301867 3120539 complement(207297..207644) 1 NC_006371.1 transposase 207644 3120539 PBPRB0187 Photobacterium profundum SS9 transposase YP_131860.1 207297 R 298386 CDS YP_131861.1 54301868 3121208 complement(209816..211471) 1 NC_006371.1 hypothetical protein 211471 3121208 PBPRB0188 Photobacterium profundum SS9 hypothetical protein YP_131861.1 209816 R 298386 CDS YP_131862.1 54301869 3120374 complement(211455..212741) 1 NC_006371.1 transposase 212741 3120374 PBPRB0189 Photobacterium profundum SS9 transposase YP_131862.1 211455 R 298386 CDS YP_131863.1 54301870 3121600 213135..213479 1 NC_006371.1 transposase 213479 3121600 PBPRB0190 Photobacterium profundum SS9 transposase YP_131863.1 213135 D 298386 CDS YP_131864.1 54301871 3121621 complement(213602..214177) 1 NC_006371.1 hypothetical protein 214177 3121621 PBPRB0191 Photobacterium profundum SS9 hypothetical protein YP_131864.1 213602 R 298386 CDS YP_131865.1 54301872 3121496 complement(214408..215430) 1 NC_006371.1 hypothetical protein 215430 3121496 PBPRB0192 Photobacterium profundum SS9 hypothetical protein YP_131865.1 214408 R 298386 CDS YP_131866.1 54301873 3121338 complement(215433..215951) 1 NC_006371.1 hypothetical protein 215951 3121338 PBPRB0193 Photobacterium profundum SS9 hypothetical protein YP_131866.1 215433 R 298386 CDS YP_131867.1 54301874 3121091 complement(216061..216408) 1 NC_006371.1 ISPpu15 transposase 216408 3121091 PBPRB0194 Photobacterium profundum SS9 ISPpu15 transposase YP_131867.1 216061 R 298386 CDS YP_131868.1 54301875 3120353 complement(216408..216704) 1 NC_006371.1 hypothetical protein 216704 3120353 PBPRB0195 Photobacterium profundum SS9 hypothetical protein YP_131868.1 216408 R 298386 CDS YP_131869.1 54301876 3120495 216881..217096 1 NC_006371.1 hypothetical protein 217096 3120495 PBPRB0196 Photobacterium profundum SS9 hypothetical protein YP_131869.1 216881 D 298386 CDS YP_131870.1 54301877 3120914 complement(217319..217630) 1 NC_006371.1 hypothetical protein 217630 3120914 PBPRB0197 Photobacterium profundum SS9 hypothetical protein YP_131870.1 217319 R 298386 CDS YP_131871.1 54301878 3121898 217732..218076 1 NC_006371.1 hypothetical protein 218076 3121898 PBPRB0198 Photobacterium profundum SS9 hypothetical protein YP_131871.1 217732 D 298386 CDS YP_131872.1 54301879 3120248 complement(218106..219473) 1 NC_006371.1 ATP-dependent RNA helicase 219473 3120248 PBPRB0199 Photobacterium profundum SS9 ATP-dependent RNA helicase YP_131872.1 218106 R 298386 CDS YP_131873.1 54301880 3120830 219755..221074 1 NC_006371.1 oxidoreductase 221074 3120830 PBPRB0200 Photobacterium profundum SS9 oxidoreductase YP_131873.1 219755 D 298386 CDS YP_131874.1 54301881 3121110 complement(221191..221706) 1 NC_006371.1 hypothetical protein 221706 3121110 PBPRB0201 Photobacterium profundum SS9 hypothetical protein YP_131874.1 221191 R 298386 CDS YP_131875.1 54301882 3120219 221890..222246 1 NC_006371.1 hypothetical protein 222246 3120219 PBPRB0202 Photobacterium profundum SS9 hypothetical protein YP_131875.1 221890 D 298386 CDS YP_131876.1 54301883 3120954 222426..223271 1 NC_006371.1 hypothetical protein 223271 3120954 PBPRB0203 Photobacterium profundum SS9 hypothetical protein YP_131876.1 222426 D 298386 CDS YP_131877.1 54301884 3119955 223951..225858 1 NC_006371.1 methyl-accepting chemotaxis protein 225858 3119955 PBPRB0204 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_131877.1 223951 D 298386 CDS YP_131878.1 54301885 3119952 226087..228081 1 NC_006371.1 hypothetical protein 228081 3119952 PBPRB0205 Photobacterium profundum SS9 hypothetical protein YP_131878.1 226087 D 298386 CDS YP_131879.1 54301886 3119950 complement(228198..229187) 1 NC_006371.1 hypothetical protein 229187 3119950 PBPRB0206 Photobacterium profundum SS9 hypothetical protein YP_131879.1 228198 R 298386 CDS YP_131880.1 54301887 3119949 229583..230851 1 NC_006371.1 autoinducer synthase 230851 3119949 PBPRB0207 Photobacterium profundum SS9 autoinducer synthase YP_131880.1 229583 D 298386 CDS YP_131881.1 54301888 3119948 230844..233726 1 NC_006371.1 sensor protein LuxN 233726 3119948 PBPRB0208 Photobacterium profundum SS9 sensor protein LuxN YP_131881.1 230844 D 298386 CDS YP_131882.1 54301889 3119947 233930..235462 1 NC_006371.1 Ada family regulatory protein 235462 3119947 PBPRB0209 Photobacterium profundum SS9 Ada family regulatory protein YP_131882.1 233930 D 298386 CDS YP_131883.1 54301890 3119946 235455..235919 1 NC_006371.1 methylated DNA-protein cysteinemethyltransferase 235919 3119946 PBPRB0210 Photobacterium profundum SS9 methylated DNA-protein cysteinemethyltransferase YP_131883.1 235455 D 298386 CDS YP_131884.1 54301891 3121927 complement(236615..237172) 1 NC_006371.1 MSHA pilin protein MshA 237172 3121927 PBPRB0211 Photobacterium profundum SS9 MSHA pilin protein MshA YP_131884.1 236615 R 298386 CDS YP_131885.1 54301892 3119968 237697..239085 1 NC_006371.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 239085 3119968 PBPRB0212 Photobacterium profundum SS9 ATP-dependent RNA helicase DbpA YP_131885.1 237697 D 298386 CDS YP_131886.1 54301893 3119966 complement(239331..239666) 1 NC_006371.1 hypothetical protein 239666 3119966 PBPRB0213 Photobacterium profundum SS9 hypothetical protein YP_131886.1 239331 R 298386 CDS YP_131887.1 54301894 3119969 complement(239730..240065) 1 NC_006371.1 hypothetical protein 240065 3119969 PBPRB0214 Photobacterium profundum SS9 hypothetical protein YP_131887.1 239730 R 298386 CDS YP_131888.1 54301895 3119965 240236..240796 1 NC_006371.1 hypothetical protein 240796 3119965 PBPRB0215 Photobacterium profundum SS9 hypothetical protein YP_131888.1 240236 D 298386 CDS YP_131889.1 54301896 3119921 241197..243152 1 NC_006371.1 Positively regulates the dhaKLM operon from a sigma-70 promoter; DNA-binding transcriptional regulator DhaR 243152 3119921 PBPRB0216 Photobacterium profundum SS9 DNA-binding transcriptional regulator DhaR YP_131889.1 241197 D 298386 CDS YP_131890.1 54301897 3121744 complement(243220..245727) 1 NC_006371.1 phosphoenolpyruvate-protein phosphotransferase 245727 3121744 PBPRB0217 Photobacterium profundum SS9 phosphoenolpyruvate-protein phosphotransferase YP_131890.1 243220 R 298386 CDS YP_131891.1 54301898 3119920 complement(245790..246416) 1 NC_006371.1 with DhaK and DhaM catalyzes the phosphorylation of dihydroxyacetone; dihydroxyacetone kinase subunit DhaL 246416 3119920 PBPRB0218 Photobacterium profundum SS9 dihydroxyacetone kinase subunit DhaL YP_131891.1 245790 R 298386 CDS YP_131892.1 54301899 3121616 complement(246434..247501) 1 NC_006371.1 with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK 247501 3121616 PBPRB0219 Photobacterium profundum SS9 dihydroxyacetone kinase subunit DhaK YP_131892.1 246434 R 298386 CDS YP_131893.1 54301900 3121665 248031..249575 1 NC_006371.1 methyl-accepting chemotaxis protein 249575 3121665 PBPRB0220 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_131893.1 248031 D 298386 CDS YP_131894.1 54301901 3121627 complement(249668..250648) 1 NC_006371.1 adh_zinc, Zinc-binding dehydrogenase 250648 3121627 PBPRB0221 Photobacterium profundum SS9 adh_zinc, Zinc-binding dehydrogenase YP_131894.1 249668 R 298386 CDS YP_131895.1 54301902 3120063 250787..251686 1 NC_006371.1 transcriptional regulator 251686 3120063 PBPRB0222 Photobacterium profundum SS9 transcriptional regulator YP_131895.1 250787 D 298386 CDS YP_131896.1 54301903 3121633 complement(251855..252646) 1 NC_006371.1 hypothetical protein 252646 3121633 PBPRB0223 Photobacterium profundum SS9 hypothetical protein YP_131896.1 251855 R 298386 CDS YP_131897.1 54301904 3121626 complement(252840..253724) 1 NC_006371.1 hypothetical protein 253724 3121626 PBPRB0224 Photobacterium profundum SS9 hypothetical protein YP_131897.1 252840 R 298386 CDS YP_131898.1 54301905 3121642 253964..255244 1 NC_006371.1 hypothetical protein 255244 3121642 PBPRB0225 Photobacterium profundum SS9 hypothetical protein YP_131898.1 253964 D 298386 CDS YP_131899.1 54301906 3121647 255251..255550 1 NC_006371.1 hypothetical protein 255550 3121647 PBPRB0226 Photobacterium profundum SS9 hypothetical protein YP_131899.1 255251 D 298386 CDS YP_131900.1 54301907 3120116 255806..257209 1 NC_006371.1 ScrA 257209 3120116 PBPRB0227 Photobacterium profundum SS9 ScrA YP_131900.1 255806 D 298386 CDS YP_131901.1 54301908 3120115 257264..258196 1 NC_006371.1 ScrB 258196 3120115 PBPRB0228 Photobacterium profundum SS9 ScrB YP_131901.1 257264 D 298386 CDS YP_131902.1 54301909 3120114 258199..260547 1 NC_006371.1 hypothetical protein 260547 3120114 PBPRB0229 Photobacterium profundum SS9 hypothetical protein YP_131902.1 258199 D 298386 CDS YP_131903.1 54301910 3120112 261098..262435 1 NC_006371.1 isomerase 262435 3120112 PBPRB0230 Photobacterium profundum SS9 isomerase YP_131903.1 261098 D 298386 CDS YP_131904.1 54301911 3120111 262502..262768 1 NC_006371.1 hypothetical protein 262768 3120111 PBPRB0231 Photobacterium profundum SS9 hypothetical protein YP_131904.1 262502 D 298386 CDS YP_131905.1 54301912 3120108 262804..263949 1 NC_006371.1 transposase 263949 3120108 PBPRB0232 Photobacterium profundum SS9 transposase YP_131905.1 262804 D 298386 CDS YP_131906.1 54301913 3120107 264093..265412 1 NC_006371.1 hypothetical protein 265412 3120107 PBPRB0233 Photobacterium profundum SS9 hypothetical protein YP_131906.1 264093 D 298386 CDS YP_131907.1 54301914 3120106 265727..266470 1 NC_006371.1 GntR family transcriptional regulator 266470 3120106 PBPRB0234 Photobacterium profundum SS9 GntR family transcriptional regulator YP_131907.1 265727 D 298386 CDS YP_131908.1 54301915 3120105 266569..267438 1 NC_006371.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 267438 prpB 3120105 prpB Photobacterium profundum SS9 2-methylisocitrate lyase YP_131908.1 266569 D 298386 CDS YP_131909.2 161936351 3120104 267593..268753 1 NC_006371.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 268753 3120104 PBPRB0236 Photobacterium profundum SS9 methylcitrate synthase YP_131909.2 267593 D 298386 CDS YP_131910.1 54301917 3120103 268797..270248 1 NC_006371.1 functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 270248 prpD 3120103 prpD Photobacterium profundum SS9 2-methylcitrate dehydratase YP_131910.1 268797 D 298386 CDS YP_131911.1 54301918 3120102 270300..272198 1 NC_006371.1 Acyl-coenzyme A synthetase;AMP-(fatty) acid ligase 272198 3120102 PBPRB0238 Photobacterium profundum SS9 Acyl-coenzyme A synthetase;AMP-(fatty) acid ligase YP_131911.1 270300 D 298386 CDS YP_131912.1 54301919 3121748 complement(272355..272762) 1 NC_006371.1 hypothetical protein 272762 3121748 PBPRB0239 Photobacterium profundum SS9 hypothetical protein YP_131912.1 272355 R 298386 CDS YP_131913.1 54301920 3120101 273017..274324 1 NC_006371.1 hypothetical protein 274324 3120101 PBPRB0240 Photobacterium profundum SS9 hypothetical protein YP_131913.1 273017 D 298386 CDS YP_131914.1 54301921 3120095 274405..274782 1 NC_006371.1 translation initiation inhibitor 274782 3120095 PBPRB0241 Photobacterium profundum SS9 translation initiation inhibitor YP_131914.1 274405 D 298386 CDS YP_131915.1 54301922 3120099 275295..276626 1 NC_006371.1 transport system permease protein 276626 3120099 PBPRB0242 Photobacterium profundum SS9 transport system permease protein YP_131915.1 275295 D 298386 CDS YP_131916.1 54301923 3120098 complement(276751..278025) 1 NC_006371.1 phospholipase 278025 3120098 PBPRB0243 Photobacterium profundum SS9 phospholipase YP_131916.1 276751 R 298386 CDS YP_131917.1 54301924 3120015 complement(278125..279975) 1 NC_006371.1 hypothetical protein 279975 3120015 PBPRB0244 Photobacterium profundum SS9 hypothetical protein YP_131917.1 278125 R 298386 CDS YP_131918.1 54301925 3120395 280580..282190 1 NC_006371.1 hypothetical protein 282190 3120395 PBPRB0245 Photobacterium profundum SS9 hypothetical protein YP_131918.1 280580 D 298386 CDS YP_131919.1 54301926 3120096 282267..282692 1 NC_006371.1 diacylglycerol kinase 282692 3120096 PBPRB0246 Photobacterium profundum SS9 diacylglycerol kinase YP_131919.1 282267 D 298386 CDS YP_131920.1 54301927 3120092 complement(282766..283167) 1 NC_006371.1 GGDEF family protein 283167 3120092 PBPRB0247 Photobacterium profundum SS9 GGDEF family protein YP_131920.1 282766 R 298386 CDS YP_131921.1 54301928 3121664 complement(283167..283631) 1 NC_006371.1 hypothetical protein 283631 3121664 PBPRB0248 Photobacterium profundum SS9 hypothetical protein YP_131921.1 283167 R 298386 CDS YP_131922.1 54301929 3120090 283965..284339 1 NC_006371.1 hypothetical protein 284339 3120090 PBPRB0249 Photobacterium profundum SS9 hypothetical protein YP_131922.1 283965 D 298386 CDS YP_131923.1 54301930 3121635 284653..285018 1 NC_006371.1 hypothetical protein 285018 3121635 PBPRB0250 Photobacterium profundum SS9 hypothetical protein YP_131923.1 284653 D 298386 CDS YP_131924.1 54301931 3121679 285039..285581 1 NC_006371.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor SigZ 285581 3121679 PBPRB0251 Photobacterium profundum SS9 RNA polymerase sigma factor SigZ YP_131924.1 285039 D 298386 CDS YP_131925.1 54301932 3121606 285652..286365 1 NC_006371.1 hypothetical protein 286365 3121606 PBPRB0252 Photobacterium profundum SS9 hypothetical protein YP_131925.1 285652 D 298386 CDS YP_131926.1 54301933 3121663 complement(286538..286915) 1 NC_006371.1 hypothetical protein 286915 3121663 PBPRB0253 Photobacterium profundum SS9 hypothetical protein YP_131926.1 286538 R 298386 CDS YP_131927.1 54301934 3121651 287658..288050 1 NC_006371.1 hypothetical protein 288050 3121651 PBPRB0254 Photobacterium profundum SS9 hypothetical protein YP_131927.1 287658 D 298386 CDS YP_131928.1 54301935 3121648 complement(288981..290834) 1 NC_006371.1 ABC-type multidrug transport system, ATPase and permease component 290834 3121648 PBPRB0255 Photobacterium profundum SS9 ABC-type multidrug transport system, ATPase and permease component YP_131928.1 288981 R 298386 CDS YP_131929.1 54301936 3121650 complement(290982..291488) 1 NC_006371.1 melibiose operon regulatory protein 291488 3121650 PBPRB0256 Photobacterium profundum SS9 melibiose operon regulatory protein YP_131929.1 290982 R 298386 CDS YP_131930.1 54301937 3121649 complement(291571..291990) 1 NC_006371.1 melibiose operon regulatory protein 291990 3121649 PBPRB0257 Photobacterium profundum SS9 melibiose operon regulatory protein YP_131930.1 291571 R 298386 CDS YP_131931.1 54301938 3121653 292315..293670 1 NC_006371.1 alpha-galactosidase 293670 3121653 PBPRB0258 Photobacterium profundum SS9 alpha-galactosidase YP_131931.1 292315 D 298386 CDS YP_131932.1 54301939 3121667 293770..295197 1 NC_006371.1 melibiose:sodium symporter 295197 3121667 PBPRB0259 Photobacterium profundum SS9 melibiose:sodium symporter YP_131932.1 293770 D 298386 CDS YP_131933.1 54301940 3121666 295314..297572 1 NC_006371.1 hypothetical protein 297572 3121666 PBPRB0260 Photobacterium profundum SS9 hypothetical protein YP_131933.1 295314 D 298386 CDS YP_131934.1 54301941 3120084 complement(297675..298991) 1 NC_006371.1 sensor histidine kinase 298991 3120084 PBPRB0261 Photobacterium profundum SS9 sensor histidine kinase YP_131934.1 297675 R 298386 CDS YP_131935.1 54301942 3121888 complement(298972..299649) 1 NC_006371.1 DNA-binding response regulator 299649 3121888 PBPRB0262 Photobacterium profundum SS9 DNA-binding response regulator YP_131935.1 298972 R 298386 CDS YP_131936.1 54301943 3121669 complement(299761..301131) 1 NC_006371.1 phosphotransferase system IIC components, N-acetylglucosamine-specific IIABC component 301131 3121669 PBPRB0263 Photobacterium profundum SS9 phosphotransferase system IIC components, N-acetylglucosamine-specific IIABC component YP_131936.1 299761 R 298386 CDS YP_131937.1 54301944 3121675 complement(301390..302610) 1 NC_006371.1 response regulator protein 302610 3121675 PBPRB0264 Photobacterium profundum SS9 response regulator protein YP_131937.1 301390 R 298386 CDS YP_131938.1 54301945 3121674 complement(303161..304003) 1 NC_006371.1 hypothetical protein 304003 3121674 PBPRB0265 Photobacterium profundum SS9 hypothetical protein YP_131938.1 303161 R 298386 CDS YP_131939.1 54301946 3121658 complement(304131..307130) 1 NC_006371.1 hypothetical protein 307130 3121658 PBPRB0266 Photobacterium profundum SS9 hypothetical protein YP_131939.1 304131 R 298386 CDS YP_131940.1 54301947 3121682 307420..308325 1 NC_006371.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid-6-phosphate etherase 308325 murQ 3121682 murQ Photobacterium profundum SS9 N-acetylmuramic acid-6-phosphate etherase YP_131940.1 307420 D 298386 CDS YP_131941.1 54301948 3121676 complement(308484..309239) 1 NC_006371.1 negative regulator of ulaG and ulaABCDEF; transcriptional repressor UlaR 309239 3121676 PBPRB0268 Photobacterium profundum SS9 transcriptional repressor UlaR YP_131941.1 308484 R 298386 CDS YP_131942.1 54301949 3121662 complement(309470..310342) 1 NC_006371.1 L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; L-xylulose 5-phosphate 3-epimerase 310342 3121662 PBPRB0269 Photobacterium profundum SS9 L-xylulose 5-phosphate 3-epimerase YP_131942.1 309470 R 298386 CDS YP_131943.1 54301950 3120083 complement(310368..311219) 1 NC_006371.1 hypothetical protein 311219 3120083 PBPRB0270 Photobacterium profundum SS9 hypothetical protein YP_131943.1 310368 R 298386 CDS YP_131944.1 54301951 3120081 complement(311359..312426) 1 NC_006371.1 L-ascorbate 6-phosphate lactonase 312426 3120081 PBPRB0271 Photobacterium profundum SS9 L-ascorbate 6-phosphate lactonase YP_131944.1 311359 R 298386 CDS YP_131945.1 54301952 3120079 complement(312536..313291) 1 NC_006371.1 negative regulator of ulaG and ulaABCDEF; transcriptional repressor UlaR 313291 3120079 PBPRB0272 Photobacterium profundum SS9 transcriptional repressor UlaR YP_131945.1 312536 R 298386 CDS YP_131946.2 161936350 3120078 313750..315498 1 NC_006371.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunits IICB 315498 ulaA 3120078 ulaA Photobacterium profundum SS9 PTS system ascorbate-specific transporter subunits IICB YP_131946.2 313750 D 298386 CDS YP_131947.1 54301954 3120077 315512..316042 1 NC_006371.1 phosphotransferase system mannitol/fructose-specific IIA component 316042 3120077 PBPRB0274 Photobacterium profundum SS9 phosphotransferase system mannitol/fructose-specific IIA component YP_131947.1 315512 D 298386 CDS YP_131948.1 54301955 3120076 316111..316803 1 NC_006371.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 316803 araD 3120076 araD Photobacterium profundum SS9 L-ribulose-5-phosphate 4-epimerase YP_131948.1 316111 D 298386 CDS YP_131949.1 54301956 3120074 317025..317669 1 NC_006371.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; 3-keto-L-gulonate-6-phosphate decarboxylase 317669 ulaD 3120074 ulaD Photobacterium profundum SS9 3-keto-L-gulonate-6-phosphate decarboxylase YP_131949.1 317025 D 298386 CDS YP_131950.1 54301957 3120073 complement(318056..319525) 1 NC_006371.1 amino acid decarboxylase 319525 3120073 PBPRB0277 Photobacterium profundum SS9 amino acid decarboxylase YP_131950.1 318056 R 298386 CDS YP_131951.1 54301958 3120072 319856..321142 1 NC_006371.1 hypothetical protein 321142 3120072 PBPRB0278 Photobacterium profundum SS9 hypothetical protein YP_131951.1 319856 D 298386 CDS YP_131952.1 54301959 3119923 complement(321266..322684) 1 NC_006371.1 arginine repressor 322684 3119923 PBPRB0279 Photobacterium profundum SS9 arginine repressor YP_131952.1 321266 R 298386 CDS YP_131953.1 54301960 3120068 complement(322678..323772) 1 NC_006371.1 hypothetical protein 323772 3120068 PBPRB0280 Photobacterium profundum SS9 hypothetical protein YP_131953.1 322678 R 298386 CDS YP_131954.1 54301961 3120069 complement(323941..324867) 1 NC_006371.1 transcriptional regulator 324867 3120069 PBPRB0281 Photobacterium profundum SS9 transcriptional regulator YP_131954.1 323941 R 298386 CDS YP_131955.1 54301962 3120067 complement(325024..325743) 1 NC_006371.1 hypothetical protein 325743 3120067 PBPRB0282 Photobacterium profundum SS9 hypothetical protein YP_131955.1 325024 R 298386 CDS YP_131956.1 54301963 3120066 complement(325865..326938) 1 NC_006371.1 hypothetical protein 326938 3120066 PBPRB0283 Photobacterium profundum SS9 hypothetical protein YP_131956.1 325865 R 298386 CDS YP_131959.1 54301966 3121755 complement(327197..328642) 1 NC_006371.1 catalase 328642 3121755 PBPRB0286 Photobacterium profundum SS9 catalase YP_131959.1 327197 R 298386 CDS YP_131960.1 54301967 3120062 328948..329715 1 NC_006371.1 transmembrane protein 329715 3120062 PBPRB0287 Photobacterium profundum SS9 transmembrane protein YP_131960.1 328948 D 298386 CDS YP_131961.1 54301968 3120061 329836..330441 1 NC_006371.1 IS1328 transposase 330441 3120061 PBPRB0288 Photobacterium profundum SS9 IS1328 transposase YP_131961.1 329836 D 298386 CDS YP_131962.1 54301969 3120060 330967..331986 1 NC_006371.1 transposase 331986 3120060 PBPRB0289 Photobacterium profundum SS9 transposase YP_131962.1 330967 D 298386 CDS YP_131963.1 54301970 3120059 332086..332346 1 NC_006371.1 transposase 332346 3120059 PBPRB0290 Photobacterium profundum SS9 transposase YP_131963.1 332086 D 298386 CDS YP_131964.1 54301971 3120058 332633..332998 1 NC_006371.1 hypothetical protein 332998 3120058 PBPRB0291 Photobacterium profundum SS9 hypothetical protein YP_131964.1 332633 D 298386 CDS YP_131965.1 54301972 3120057 332995..333270 1 NC_006371.1 hypothetical protein 333270 3120057 PBPRB0292 Photobacterium profundum SS9 hypothetical protein YP_131965.1 332995 D 298386 CDS YP_131966.1 54301973 3121725 333366..333662 1 NC_006371.1 hypothetical protein 333662 3121725 PBPRB0293 Photobacterium profundum SS9 hypothetical protein YP_131966.1 333366 D 298386 CDS YP_131967.1 54301974 3120055 333662..334009 1 NC_006371.1 ISPpu15 transposase 334009 3120055 PBPRB0294 Photobacterium profundum SS9 ISPpu15 transposase YP_131967.1 333662 D 298386 CDS YP_131968.1 54301975 3120053 334130..335662 1 NC_006371.1 transposase 335662 3120053 PBPRB0295 Photobacterium profundum SS9 transposase YP_131968.1 334130 D 298386 CDS YP_131969.1 54301976 3120054 336127..336423 1 NC_006371.1 hypothetical protein 336423 3120054 PBPRB0296 Photobacterium profundum SS9 hypothetical protein YP_131969.1 336127 D 298386 CDS YP_131970.1 54301977 3120052 complement(336676..338064) 1 NC_006371.1 transposase 338064 3120052 PBPRB0297 Photobacterium profundum SS9 transposase YP_131970.1 336676 R 298386 CDS YP_131971.1 54301978 3120050 338113..338424 1 NC_006371.1 hypothetical protein 338424 3120050 PBPRB0298 Photobacterium profundum SS9 hypothetical protein YP_131971.1 338113 D 298386 CDS YP_131972.1 54301979 3120051 338530..339048 1 NC_006371.1 hypothetical protein 339048 3120051 PBPRB0299 Photobacterium profundum SS9 hypothetical protein YP_131972.1 338530 D 298386 CDS YP_131973.1 54301980 3120049 complement(339096..339554) 1 NC_006371.1 transposase 339554 3120049 PBPRB0300 Photobacterium profundum SS9 transposase YP_131973.1 339096 R 298386 CDS YP_131974.1 54301981 3120048 complement(339551..340153) 1 NC_006371.1 hypothetical protein 340153 3120048 PBPRB0301 Photobacterium profundum SS9 hypothetical protein YP_131974.1 339551 R 298386 CDS YP_131975.1 54301982 3120046 340270..342105 1 NC_006371.1 hypothetical protein 342105 3120046 PBPRB0302 Photobacterium profundum SS9 hypothetical protein YP_131975.1 340270 D 298386 CDS YP_131976.1 54301983 3120045 complement(342191..343639) 1 NC_006371.1 hypothetical protein 343639 3120045 PBPRB0303 Photobacterium profundum SS9 hypothetical protein YP_131976.1 342191 R 298386 CDS YP_131977.1 54301984 3120041 complement(343636..344661) 1 NC_006371.1 endoglucanase 344661 3120041 PBPRB0304 Photobacterium profundum SS9 endoglucanase YP_131977.1 343636 R 298386 CDS YP_131978.1 54301985 3120040 complement(344658..346736) 1 NC_006371.1 hypothetical protein 346736 3120040 PBPRB0305 Photobacterium profundum SS9 hypothetical protein YP_131978.1 344658 R 298386 CDS YP_131979.1 54301986 3120039 complement(346733..348964) 1 NC_006371.1 glycosyltransferase 348964 3120039 PBPRB0306 Photobacterium profundum SS9 glycosyltransferase YP_131979.1 346733 R 298386 CDS YP_131980.1 54301987 3120038 complement(348966..349493) 1 NC_006371.1 hypothetical protein 349493 3120038 PBPRB0307 Photobacterium profundum SS9 hypothetical protein YP_131980.1 348966 R 298386 CDS YP_131981.1 54301988 3120037 complement(349835..350779) 1 NC_006371.1 hypothetical protein 350779 3120037 PBPRB0308 Photobacterium profundum SS9 hypothetical protein YP_131981.1 349835 R 298386 CDS YP_131982.1 54301989 3120035 complement(350958..352478) 1 NC_006371.1 aldehyde dehydrogenase 352478 3120035 PBPRB0309 Photobacterium profundum SS9 aldehyde dehydrogenase YP_131982.1 350958 R 298386 CDS YP_131983.1 54301990 3120036 352729..354540 1 NC_006371.1 Fis family transcriptional regulator 354540 3120036 PBPRB0310 Photobacterium profundum SS9 Fis family transcriptional regulator YP_131983.1 352729 D 298386 CDS YP_131984.1 54301991 3120034 complement(354775..355116) 1 NC_006371.1 hypothetical protein 355116 3120034 PBPRB0311 Photobacterium profundum SS9 hypothetical protein YP_131984.1 354775 R 298386 CDS YP_131985.1 54301992 3120033 355697..357163 1 NC_006371.1 GbpA; plays a role mediating bacterial attachment and colonization of zooplankton and/or intestinal epithelium; in Vibrio cholerae this protein probably binds directly N-acetylglucosamine residues in chitin, glycoproteins and lipids on intestinal epithelial cells; N-acetylglucosamine-binding protein A 357163 3120033 PBPRB0312 Photobacterium profundum SS9 N-acetylglucosamine-binding protein A YP_131985.1 355697 D 298386 CDS YP_131986.1 54301993 3120032 357254..357790 1 NC_006371.1 hypothetical protein 357790 3120032 PBPRB0313 Photobacterium profundum SS9 hypothetical protein YP_131986.1 357254 D 298386 CDS YP_131987.1 54301994 3120031 358040..358240 1 NC_006371.1 multidrug efflux transporter 358240 3120031 PBPRB0314 Photobacterium profundum SS9 multidrug efflux transporter YP_131987.1 358040 D 298386 CDS YP_131988.1 54301995 3120030 358262..358507 1 NC_006371.1 hypothetical protein 358507 3120030 PBPRB0315 Photobacterium profundum SS9 hypothetical protein YP_131988.1 358262 D 298386 CDS YP_131989.1 54301996 3120029 complement(358526..358894) 1 NC_006371.1 hypothetical protein 358894 3120029 PBPRB0316 Photobacterium profundum SS9 hypothetical protein YP_131989.1 358526 R 298386 CDS YP_131990.1 54301997 3120028 complement(359007..360572) 1 NC_006371.1 hypothetical protein 360572 3120028 PBPRB0317 Photobacterium profundum SS9 hypothetical protein YP_131990.1 359007 R 298386 CDS YP_131991.1 54301998 3120027 360963..361628 1 NC_006371.1 phospholipase/carboxylesterase family protein 361628 3120027 PBPRB0318 Photobacterium profundum SS9 phospholipase/carboxylesterase family protein YP_131991.1 360963 D 298386 CDS YP_131992.1 54301999 3120026 complement(361683..363053) 1 NC_006371.1 L-serine dehydratase 1 363053 3120026 PBPRB0319 Photobacterium profundum SS9 L-serine dehydratase 1 YP_131992.1 361683 R 298386 CDS YP_131993.1 54302000 3120025 363479..363688 1 NC_006371.1 hypothetical protein 363688 3120025 PBPRB0320 Photobacterium profundum SS9 hypothetical protein YP_131993.1 363479 D 298386 CDS YP_131994.1 54302001 3120024 complement(363809..366778) 1 NC_006371.1 hypothetical protein 366778 3120024 PBPRB0321 Photobacterium profundum SS9 hypothetical protein YP_131994.1 363809 R 298386 CDS YP_131995.1 54302002 3120023 complement(367104..368477) 1 NC_006371.1 hypothetical protein 368477 3120023 PBPRB0322 Photobacterium profundum SS9 hypothetical protein YP_131995.1 367104 R 298386 CDS YP_131996.1 54302003 3120021 368636..369250 1 NC_006371.1 amino acid transporter LysE 369250 3120021 PBPRB0323 Photobacterium profundum SS9 amino acid transporter LysE YP_131996.1 368636 D 298386 CDS YP_131997.1 54302004 3121764 369405..370763 1 NC_006371.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter 370763 3121764 PBPRB0324 Photobacterium profundum SS9 anaerobic C4-dicarboxylate transporter YP_131997.1 369405 D 298386 CDS YP_131998.1 54302005 3121766 complement(372421..373785) 1 NC_006371.1 Trk family potassium uptake protein 373785 3121766 PBPRB0325 Photobacterium profundum SS9 Trk family potassium uptake protein YP_131998.1 372421 R 298386 CDS YP_131999.1 54302006 3121762 complement(373787..374440) 1 NC_006371.1 potassium uptake protein 374440 3121762 PBPRB0326 Photobacterium profundum SS9 potassium uptake protein YP_131999.1 373787 R 298386 CDS YP_132000.1 54302007 3121694 complement(374523..375230) 1 NC_006371.1 transcriptional regulatory protein KdpE 375230 3121694 PBPRB0327 Photobacterium profundum SS9 transcriptional regulatory protein KdpE YP_132000.1 374523 R 298386 CDS YP_132001.1 54302008 3121704 complement(375205..376248) 1 NC_006371.1 sensor histidine kinase 376248 3121704 PBPRB0328 Photobacterium profundum SS9 sensor histidine kinase YP_132001.1 375205 R 298386 CDS YP_132002.1 54302009 3121807 complement(376786..377688) 1 NC_006371.1 anaerobic dimethyl sulfoxide reductase subunit C 377688 3121807 PBPRB0329 Photobacterium profundum SS9 anaerobic dimethyl sulfoxide reductase subunit C YP_132002.1 376786 R 298386 CDS YP_132003.1 54302010 3121809 complement(378258..380702) 1 NC_006371.1 anaerobic dimethyl sulfoxide reductase, subunit A 380702 3121809 PBPRB0330 Photobacterium profundum SS9 anaerobic dimethyl sulfoxide reductase, subunit A YP_132003.1 378258 R 298386 CDS YP_132004.1 54302011 3120089 381066..381650 1 NC_006371.1 hypothetical protein 381650 3120089 PBPRB0331 Photobacterium profundum SS9 hypothetical protein YP_132004.1 381066 D 298386 CDS YP_132005.1 54302012 3121702 381650..382207 1 NC_006371.1 ferredoxin-type protein NapF 382207 3121702 PBPRB0332 Photobacterium profundum SS9 ferredoxin-type protein NapF YP_132005.1 381650 D 298386 CDS YP_132006.1 54302013 3120118 382546..382923 1 NC_006371.1 hypothetical protein 382923 3120118 PBPRB0333 Photobacterium profundum SS9 hypothetical protein YP_132006.1 382546 D 298386 CDS YP_132007.1 54302014 3120087 383101..383841 1 NC_006371.1 hypothetical protein 383841 3120087 PBPRB0334 Photobacterium profundum SS9 hypothetical protein YP_132007.1 383101 D 298386 CDS YP_132008.1 54302015 3119926 383989..384864 1 NC_006371.1 hypothetical protein 384864 3119926 PBPRB0335 Photobacterium profundum SS9 hypothetical protein YP_132008.1 383989 D 298386 CDS YP_132009.1 54302016 3119928 385003..385905 1 NC_006371.1 hypothetical protein 385905 3119928 PBPRB0336 Photobacterium profundum SS9 hypothetical protein YP_132009.1 385003 D 298386 CDS YP_132010.1 54302017 3119929 386036..386692 1 NC_006371.1 2-hydroxychromene-2-carboxylate isomerase 386692 3119929 PBPRB0337 Photobacterium profundum SS9 2-hydroxychromene-2-carboxylate isomerase YP_132010.1 386036 D 298386 CDS YP_132011.1 54302018 3119924 386980..387723 1 NC_006371.1 hypothetical protein 387723 3119924 PBPRB0338 Photobacterium profundum SS9 hypothetical protein YP_132011.1 386980 D 298386 CDS YP_132012.1 54302019 3119930 387793..388527 1 NC_006371.1 hypothetical protein 388527 3119930 PBPRB0339 Photobacterium profundum SS9 hypothetical protein YP_132012.1 387793 D 298386 CDS YP_132013.1 54302020 3119931 388552..388857 1 NC_006371.1 hypothetical protein 388857 3119931 PBPRB0340 Photobacterium profundum SS9 hypothetical protein YP_132013.1 388552 D 298386 CDS YP_132014.1 54302021 3119932 complement(388963..389427) 1 NC_006371.1 hypothetical protein 389427 3119932 PBPRB0341 Photobacterium profundum SS9 hypothetical protein YP_132014.1 388963 R 298386 CDS YP_132015.1 54302022 3119934 complement(389531..389956) 1 NC_006371.1 hypothetical protein 389956 3119934 PBPRB0342 Photobacterium profundum SS9 hypothetical protein YP_132015.1 389531 R 298386 CDS YP_132016.1 54302023 3119933 390502..392067 1 NC_006371.1 hypothetical protein 392067 3119933 PBPRB0343 Photobacterium profundum SS9 hypothetical protein YP_132016.1 390502 D 298386 CDS YP_132017.1 54302024 3119935 392928..393272 1 NC_006371.1 hypothetical protein 393272 3119935 PBPRB0344 Photobacterium profundum SS9 hypothetical protein YP_132017.1 392928 D 298386 CDS YP_132018.1 54302025 3119937 complement(393320..393589) 1 NC_006371.1 hypothetical protein 393589 3119937 PBPRB0345 Photobacterium profundum SS9 hypothetical protein YP_132018.1 393320 R 298386 CDS YP_132019.1 54302026 3119936 complement(393688..394833) 1 NC_006371.1 transposase 394833 3119936 PBPRB0346 Photobacterium profundum SS9 transposase YP_132019.1 393688 R 298386 CDS YP_132020.1 54302027 3119938 complement(394869..395135) 1 NC_006371.1 hypothetical protein 395135 3119938 PBPRB0347 Photobacterium profundum SS9 hypothetical protein YP_132020.1 394869 R 298386 CDS YP_132021.1 54302028 3121884 complement(395202..395546) 1 NC_006371.1 hypothetical protein 395546 3121884 PBPRB0348 Photobacterium profundum SS9 hypothetical protein YP_132021.1 395202 R 298386 CDS YP_132022.1 54302029 3121885 complement(395888..396193) 1 NC_006371.1 hypothetical protein 396193 3121885 PBPRB0349 Photobacterium profundum SS9 hypothetical protein YP_132022.1 395888 R 298386 CDS YP_132023.1 54302030 3119963 396632..397375 1 NC_006371.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 397375 fabG 3119963 fabG Photobacterium profundum SS9 3-ketoacyl-ACP reductase YP_132023.1 396632 D 298386 CDS YP_132024.1 54302031 3121860 397604..397951 1 NC_006371.1 hypothetical protein 397951 3121860 PBPRB0351 Photobacterium profundum SS9 hypothetical protein YP_132024.1 397604 D 298386 CDS YP_132025.1 54302032 3120100 398017..399834 1 NC_006371.1 polyhydroxyalkanoic acid synthase 399834 3120100 PBPRB0352 Photobacterium profundum SS9 polyhydroxyalkanoic acid synthase YP_132025.1 398017 D 298386 CDS YP_132026.1 54302033 3120085 complement(400022..400270) 1 NC_006371.1 hypothetical protein 400270 3120085 PBPRB0353 Photobacterium profundum SS9 hypothetical protein YP_132026.1 400022 R 298386 CDS YP_132027.1 54302034 3121677 complement(400313..400633) 1 NC_006371.1 hypothetical protein 400633 3121677 PBPRB0354 Photobacterium profundum SS9 hypothetical protein YP_132027.1 400313 R 298386 CDS YP_132028.1 54302035 3121735 complement(400780..401238) 1 NC_006371.1 hypothetical protein 401238 3121735 PBPRB0355 Photobacterium profundum SS9 hypothetical protein YP_132028.1 400780 R 298386 CDS YP_132029.1 54302036 3121681 401623..402384 1 NC_006371.1 hypothetical protein 402384 3121681 PBPRB0356 Photobacterium profundum SS9 hypothetical protein YP_132029.1 401623 D 298386 CDS YP_132030.1 54302037 3121672 402423..403037 1 NC_006371.1 hypothetical protein 403037 3121672 PBPRB0357 Photobacterium profundum SS9 hypothetical protein YP_132030.1 402423 D 298386 CDS YP_132031.1 54302038 3121673 403107..403667 1 NC_006371.1 hypothetical protein 403667 3121673 PBPRB0358 Photobacterium profundum SS9 hypothetical protein YP_132031.1 403107 D 298386 CDS YP_132032.1 54302039 3121734 404646..405008 1 NC_006371.1 alkaline phosphatase 405008 3121734 PBPRB0359 Photobacterium profundum SS9 alkaline phosphatase YP_132032.1 404646 D 298386 CDS YP_132033.1 54302040 3121683 complement(405081..405881) 1 NC_006371.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase 405881 nagB 3121683 nagB Photobacterium profundum SS9 glucosamine-6-phosphate deaminase YP_132033.1 405081 R 298386 CDS YP_132034.1 54302041 3120016 complement(406131..406661) 1 NC_006371.1 Acts as a repressor of the mtlAD operon; mannitol repressor protein 406661 mtlR 3120016 mtlR Photobacterium profundum SS9 mannitol repressor protein YP_132034.1 406131 R 298386 CDS YP_132035.1 54302042 3120018 complement(406767..407912) 1 NC_006371.1 mannitol-1-phosphate 5-dehydrogenase 407912 3120018 PBPRB0362 Photobacterium profundum SS9 mannitol-1-phosphate 5-dehydrogenase YP_132035.1 406767 R 298386 CDS YP_132036.1 54302043 3120014 complement(408017..409969) 1 NC_006371.1 mannitol-specific IIABC component, PTS system 409969 3120014 PBPRB0363 Photobacterium profundum SS9 mannitol-specific IIABC component, PTS system YP_132036.1 408017 R 298386 CDS YP_132037.1 54302044 3120013 410652..413024 1 NC_006371.1 ATP-dependent protease LA-relatedprotein 413024 3120013 PBPRB0364 Photobacterium profundum SS9 ATP-dependent protease LA-relatedprotein YP_132037.1 410652 D 298386 CDS YP_132038.1 54302045 3120011 413233..414909 1 NC_006371.1 methyl-accepting chemotaxis protein 414909 3120011 PBPRB0365 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_132038.1 413233 D 298386 CDS YP_132039.1 54302046 3120012 complement(414998..415885) 1 NC_006371.1 hypothetical protein 415885 3120012 PBPRB0366 Photobacterium profundum SS9 hypothetical protein YP_132039.1 414998 R 298386 CDS YP_132040.1 54302047 3120009 complement(416175..417803) 1 NC_006371.1 methyl-accepting chemotaxis protein 417803 3120009 PBPRB0367 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_132040.1 416175 R 298386 CDS YP_132041.1 54302048 3120010 complement(418069..418776) 1 NC_006371.1 ABC transporter, ATP-binding protein 418776 3120010 PBPRB0368 Photobacterium profundum SS9 ABC transporter, ATP-binding protein YP_132041.1 418069 R 298386 CDS YP_132042.1 54302049 3120007 complement(418783..420063) 1 NC_006371.1 hypothetical protein 420063 3120007 PBPRB0369 Photobacterium profundum SS9 hypothetical protein YP_132042.1 418783 R 298386 CDS YP_132043.1 54302050 3120008 complement(420065..421282) 1 NC_006371.1 hypothetical protein 421282 3120008 PBPRB0370 Photobacterium profundum SS9 hypothetical protein YP_132043.1 420065 R 298386 CDS YP_132044.1 54302051 3120005 complement(421279..422577) 1 NC_006371.1 outer membrane protein TolC 422577 3120005 PBPRB0371 Photobacterium profundum SS9 outer membrane protein TolC YP_132044.1 421279 R 298386 CDS YP_132045.1 54302052 3120006 complement(422570..423709) 1 NC_006371.1 hypothetical protein 423709 3120006 PBPRB0372 Photobacterium profundum SS9 hypothetical protein YP_132045.1 422570 R 298386 CDS YP_132046.2 161936349 3121894 complement(423947..425002) 1 NC_006371.1 Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import; ferric transporter ATP-binding subunit 425002 fbpC 3121894 fbpC Photobacterium profundum SS9 ferric transporter ATP-binding subunit YP_132046.2 423947 R 298386 CDS YP_132047.1 54302054 3119981 complement(425021..427117) 1 NC_006371.1 ABC transporter, permease 427117 3119981 PBPRB0374 Photobacterium profundum SS9 ABC transporter, permease YP_132047.1 425021 R 298386 CDS YP_132048.1 54302055 3119978 complement(427419..428453) 1 NC_006371.1 iron(III) ABC transporter, periplasmic iron-compound-binding protein 428453 3119978 PBPRB0375 Photobacterium profundum SS9 iron(III) ABC transporter, periplasmic iron-compound-binding protein YP_132048.1 427419 R 298386 CDS YP_132049.1 54302056 3119979 complement(428622..429947) 1 NC_006371.1 membrane protein regulates uhpT expression; regulatory protein UhpC 429947 3119979 PBPRB0376 Photobacterium profundum SS9 regulatory protein UhpC YP_132049.1 428622 R 298386 CDS YP_132050.1 54302057 3119977 complement(430047..431660) 1 NC_006371.1 hypoyhetical signal transduction histidine kinase 431660 3119977 PBPRB0377 Photobacterium profundum SS9 hypoyhetical signal transduction histidine kinase YP_132050.1 430047 R 298386 CDS YP_132051.1 54302058 3119976 complement(431664..432293) 1 NC_006371.1 transcriptional regulator UhpA 432293 3119976 PBPRB0378 Photobacterium profundum SS9 transcriptional regulator UhpA YP_132051.1 431664 R 298386 CDS YP_132052.1 54302059 3120044 complement(432499..433716) 1 NC_006371.1 ammonium permease 433716 3120044 PBPRB0379 Photobacterium profundum SS9 ammonium permease YP_132052.1 432499 R 298386 CDS YP_132053.1 54302060 3120748 complement(433778..434152) 1 NC_006371.1 hypothetical protein 434152 3120748 PBPRB0380 Photobacterium profundum SS9 hypothetical protein YP_132053.1 433778 R 298386 CDS YP_132054.1 54302061 3119975 434803..436716 1 NC_006371.1 methyl-accepting chemotaxis protein 436716 3119975 PBPRB0381 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_132054.1 434803 D 298386 CDS YP_132055.1 54302062 3121710 complement(436848..438248) 1 NC_006371.1 tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; tryptophanase 438248 tnaA 3121710 tnaA Photobacterium profundum SS9 tryptophanase YP_132055.1 436848 R 298386 CDS YP_132056.1 54302063 3121731 complement(439023..439346) 1 NC_006371.1 hypothetical protein 439346 3121731 PBPRB0383 Photobacterium profundum SS9 hypothetical protein YP_132056.1 439023 R 298386 CDS YP_132057.1 54302064 3121736 439893..440216 1 NC_006371.1 hypothetical protein 440216 3121736 PBPRB0384 Photobacterium profundum SS9 hypothetical protein YP_132057.1 439893 D 298386 CDS YP_132058.1 54302065 3121732 complement(440356..441504) 1 NC_006371.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 441504 3121732 PBPRB0385 Photobacterium profundum SS9 ribosome-associated GTPase YP_132058.1 440356 R 298386 CDS YP_132059.1 54302066 3121814 441662..442768 1 NC_006371.1 cytochrome c oxidase subunit II 442768 3121814 PBPRB0386 Photobacterium profundum SS9 cytochrome c oxidase subunit II YP_132059.1 441662 D 298386 CDS YP_132060.1 54302067 3121869 442806..444608 1 NC_006371.1 cytochrome C oxidase 444608 3121869 PBPRB0387 Photobacterium profundum SS9 cytochrome C oxidase YP_132060.1 442806 D 298386 CDS YP_132061.1 54302068 3121843 444601..445227 1 NC_006371.1 cytochrome c oxidase subunit III 445227 3121843 PBPRB0388 Photobacterium profundum SS9 cytochrome c oxidase subunit III YP_132061.1 444601 D 298386 CDS YP_132062.1 54302069 3119942 445242..445991 1 NC_006371.1 cytochrome c oxidase subunit III 445991 3119942 PBPRB0389 Photobacterium profundum SS9 cytochrome c oxidase subunit III YP_132062.1 445242 D 298386 CDS YP_132063.1 54302070 3121833 446002..446325 1 NC_006371.1 small integral membrane protein 446325 3121833 PBPRB0390 Photobacterium profundum SS9 small integral membrane protein YP_132063.1 446002 D 298386 CDS YP_132064.1 54302071 3119940 complement(446404..446958) 1 NC_006371.1 hypothetical protein 446958 3119940 PBPRB0391 Photobacterium profundum SS9 hypothetical protein YP_132064.1 446404 R 298386 CDS YP_132065.1 54302072 3119945 447769..448413 1 NC_006371.1 hypothetical protein 448413 3119945 PBPRB0392 Photobacterium profundum SS9 hypothetical protein YP_132065.1 447769 D 298386 CDS YP_132066.1 54302073 3119943 complement(448410..448979) 1 NC_006371.1 hypothetical protein 448979 3119943 PBPRB0393 Photobacterium profundum SS9 hypothetical protein YP_132066.1 448410 R 298386 CDS YP_132067.1 54302074 3121592 complement(449870..450574) 1 NC_006371.1 hypothetical protein 450574 3121592 PBPRB0394 Photobacterium profundum SS9 hypothetical protein YP_132067.1 449870 R 298386 CDS YP_132068.1 54302075 3121907 450900..451325 1 NC_006371.1 hypothetical protein 451325 3121907 PBPRB0395 Photobacterium profundum SS9 hypothetical protein YP_132068.1 450900 D 298386 CDS YP_132069.1 54302076 3119973 451522..453261 1 NC_006371.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 453261 3119973 PBPRB0396 Photobacterium profundum SS9 malate dehydrogenase YP_132069.1 451522 D 298386 CDS YP_132070.1 54302077 3119972 453595..454614 1 NC_006371.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 454614 3119972 PBPRB0397 Photobacterium profundum SS9 tryptophanyl-tRNA synthetase YP_132070.1 453595 D 298386 CDS YP_132071.1 54302078 3121936 complement(454805..455527) 1 NC_006371.1 hypothetical protein 455527 3121936 PBPRB0398 Photobacterium profundum SS9 hypothetical protein YP_132071.1 454805 R 298386 CDS YP_132072.1 54302079 3119971 complement(455800..456369) 1 NC_006371.1 hypothetical protein 456369 3119971 PBPRB0399 Photobacterium profundum SS9 hypothetical protein YP_132072.1 455800 R 298386 CDS YP_132073.1 54302080 3121861 complement(456366..456908) 1 NC_006371.1 cytochrome b561 456908 3121861 PBPRB0400 Photobacterium profundum SS9 cytochrome b561 YP_132073.1 456366 R 298386 CDS YP_132074.1 54302081 3121925 complement(457200..457904) 1 NC_006371.1 hydrolase 457904 3121925 PBPRB0401 Photobacterium profundum SS9 hydrolase YP_132074.1 457200 R 298386 CDS YP_132075.2 161936348 3121863 complement(458054..459439) 1 NC_006371.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 459439 fumC 3121863 fumC Photobacterium profundum SS9 fumarate hydratase YP_132075.2 458054 R 298386 CDS YP_132076.1 54302083 3121877 complement(460055..461206) 1 NC_006371.1 hydrolase 461206 3121877 PBPRB0403 Photobacterium profundum SS9 hydrolase YP_132076.1 460055 R 298386 CDS YP_132077.1 54302084 3121878 complement(461655..463079) 1 NC_006371.1 alpha-amylase 463079 3121878 PBPRB0404 Photobacterium profundum SS9 alpha-amylase YP_132077.1 461655 R 298386 CDS YP_132078.1 54302085 3119925 463461..464678 1 NC_006371.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 464678 glgC 3119925 glgC Photobacterium profundum SS9 glucose-1-phosphate adenylyltransferase YP_132078.1 463461 D 298386 CDS YP_132079.1 54302086 3120142 464668..466194 1 NC_006371.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 466194 glgA 3120142 glgA Photobacterium profundum SS9 glycogen synthase YP_132079.1 464668 D 298386 CDS YP_132080.1 54302087 3120140 466486..468372 1 NC_006371.1 methyl-accepting chemotaxis protein 468372 3120140 PBPRB0407 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_132080.1 466486 D 298386 CDS YP_132081.1 54302088 3120141 complement(468501..469181) 1 NC_006371.1 hypothetical protein 469181 3120141 PBPRB0408 Photobacterium profundum SS9 hypothetical protein YP_132081.1 468501 R 298386 CDS YP_132082.1 54302089 3120139 complement(469335..470288) 1 NC_006371.1 transcriptional regulator 470288 3120139 PBPRB0409 Photobacterium profundum SS9 transcriptional regulator YP_132082.1 469335 R 298386 CDS YP_132083.1 54302090 3120138 470489..472132 1 NC_006371.1 glycosidase 472132 3120138 PBPRB0410 Photobacterium profundum SS9 glycosidase YP_132083.1 470489 D 298386 CDS YP_132084.1 54302091 3120135 472475..473335 1 NC_006371.1 hypothetical protein 473335 3120135 PBPRB0411 Photobacterium profundum SS9 hypothetical protein YP_132084.1 472475 D 298386 CDS YP_132085.1 54302092 3120136 complement(473443..475392) 1 NC_006371.1 glycogen protein GlgX 475392 3120136 PBPRB0412 Photobacterium profundum SS9 glycogen protein GlgX YP_132085.1 473443 R 298386 CDS YP_132086.1 54302093 3120134 475911..477269 1 NC_006371.1 maltoporin 477269 3120134 PBPRB0413 Photobacterium profundum SS9 maltoporin YP_132086.1 475911 D 298386 CDS YP_132087.1 54302094 3120132 477401..478279 1 NC_006371.1 hypothetical protein 478279 3120132 PBPRB0414 Photobacterium profundum SS9 hypothetical protein YP_132087.1 477401 D 298386 CDS YP_132088.1 54302095 3120133 478415..480214 1 NC_006371.1 glycosidase 480214 3120133 PBPRB0415 Photobacterium profundum SS9 glycosidase YP_132088.1 478415 D 298386 CDS YP_132089.1 54302096 3120269 480768..481952 1 NC_006371.1 functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; maltose ABC transporter substrate-binding protein 481952 malE 3120269 malE Photobacterium profundum SS9 maltose ABC transporter substrate-binding protein YP_132089.1 480768 D 298386 CDS YP_132090.1 54302097 3120131 482091..484886 1 NC_006371.1 glycogen debranching enzyme 484886 3120131 PBPRB0417 Photobacterium profundum SS9 glycogen debranching enzyme YP_132090.1 482091 D 298386 CDS YP_132091.1 54302098 3120130 485808..486143 1 NC_006371.1 hypothetical protein 486143 3120130 PBPRB0418 Photobacterium profundum SS9 hypothetical protein YP_132091.1 485808 D 298386 CDS YP_132092.1 54302099 3120129 486223..486540 1 NC_006371.1 hypothetical protein 486540 3120129 PBPRB0419 Photobacterium profundum SS9 hypothetical protein YP_132092.1 486223 D 298386 CDS YP_132093.1 54302100 3120109 complement(487537..488679) 1 NC_006371.1 with malEFG is involved in import of maltose/maltodextrin; maltose ABC transporter ATP-binding protein 488679 3120109 PBPRB0420 Photobacterium profundum SS9 maltose ABC transporter ATP-binding protein YP_132093.1 487537 R 298386 CDS YP_132094.1 54302101 3120128 489271..490452 1 NC_006371.1 functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; maltose ABC transporter substrate-binding protein 490452 malE 3120128 malE Photobacterium profundum SS9 maltose ABC transporter substrate-binding protein YP_132094.1 489271 D 298386 CDS YP_132095.1 54302102 3121297 490518..492092 1 NC_006371.1 with MalKGE is involved in maltose transport into the cell; maltose transporter membrane protein 492092 malF 3121297 malF Photobacterium profundum SS9 maltose transporter membrane protein YP_132095.1 490518 D 298386 CDS YP_132096.1 54302103 3120125 492104..492994 1 NC_006371.1 with MalKFE is involved in the transport of maltose into the cell; maltose ABC transporter permease 492994 malG 3120125 malG Photobacterium profundum SS9 maltose ABC transporter permease YP_132096.1 492104 D 298386 CDS YP_132097.1 54302104 3120124 complement(493584..494825) 1 NC_006371.1 GGDEF family protein 494825 3120124 PBPRB0424 Photobacterium profundum SS9 GGDEF family protein YP_132097.1 493584 R 298386 CDS YP_132098.1 54302105 3120126 complement(495003..495545) 1 NC_006371.1 hypothetical protein 495545 3120126 PBPRB0425 Photobacterium profundum SS9 hypothetical protein YP_132098.1 495003 R 298386 CDS YP_132099.1 54302106 3120122 complement(495692..497794) 1 NC_006371.1 Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II 497794 3120122 PBPRB0426 Photobacterium profundum SS9 exoribonuclease II YP_132099.1 495692 R 298386 CDS YP_132100.1 54302107 3120093 498315..500186 1 NC_006371.1 ATP-dependent RNA helicase 500186 3120093 PBPRB0427 Photobacterium profundum SS9 ATP-dependent RNA helicase YP_132100.1 498315 D 298386 CDS YP_132101.1 54302108 3120121 complement(500800..501582) 1 NC_006371.1 hypothetical protein 501582 3120121 PBPRB0428 Photobacterium profundum SS9 hypothetical protein YP_132101.1 500800 R 298386 CDS YP_132102.1 54302109 3120120 complement(501621..502817) 1 NC_006371.1 hypothetical protein 502817 3120120 PBPRB0429 Photobacterium profundum SS9 hypothetical protein YP_132102.1 501621 R 298386 CDS YP_132103.1 54302110 3120119 complement(503245..504027) 1 NC_006371.1 hypothetical protein 504027 3120119 PBPRB0430 Photobacterium profundum SS9 hypothetical protein YP_132103.1 503245 R 298386 CDS YP_132104.1 54302111 3119982 504438..504767 1 NC_006371.1 hypothetical protein 504767 3119982 PBPRB0431 Photobacterium profundum SS9 hypothetical protein YP_132104.1 504438 D 298386 CDS YP_132105.1 54302112 3119983 complement(504882..505238) 1 NC_006371.1 hypothetical protein 505238 3119983 PBPRB0432 Photobacterium profundum SS9 hypothetical protein YP_132105.1 504882 R 298386 CDS YP_132106.1 54302113 3119984 complement(505369..505761) 1 NC_006371.1 hypothetical protein 505761 3119984 PBPRB0433 Photobacterium profundum SS9 hypothetical protein YP_132106.1 505369 R 298386 CDS YP_132107.1 54302114 3119985 complement(505963..506976) 1 NC_006371.1 hypothetical protein 506976 3119985 PBPRB0434 Photobacterium profundum SS9 hypothetical protein YP_132107.1 505963 R 298386 CDS YP_132108.1 54302115 3119986 507354..508058 1 NC_006371.1 hypothetical protein 508058 3119986 PBPRB0435 Photobacterium profundum SS9 hypothetical protein YP_132108.1 507354 D 298386 CDS YP_132109.1 54302116 3119989 508103..508435 1 NC_006371.1 hypothetical protein 508435 3119989 PBPRB0436 Photobacterium profundum SS9 hypothetical protein YP_132109.1 508103 D 298386 CDS YP_132110.1 54302117 3119990 508640..509269 1 NC_006371.1 hypothetical protein 509269 3119990 PBPRB0437 Photobacterium profundum SS9 hypothetical protein YP_132110.1 508640 D 298386 CDS YP_132111.1 54302118 3119993 509440..510114 1 NC_006371.1 hypothetical protein 510114 3119993 PBPRB0438 Photobacterium profundum SS9 hypothetical protein YP_132111.1 509440 D 298386 CDS YP_132112.1 54302119 3119995 510123..510626 1 NC_006371.1 hypothetical protein 510626 3119995 PBPRB0439 Photobacterium profundum SS9 hypothetical protein YP_132112.1 510123 D 298386 CDS YP_132113.1 54302120 3119997 510928..512286 1 NC_006371.1 Fis family transcriptional regulator 512286 3119997 PBPRB0440 Photobacterium profundum SS9 Fis family transcriptional regulator YP_132113.1 510928 D 298386 CDS YP_132114.1 54302121 3119998 complement(513060..514502) 1 NC_006371.1 glycosylase 514502 3119998 PBPRB0441 Photobacterium profundum SS9 glycosylase YP_132114.1 513060 R 298386 CDS YP_132115.1 54302122 3119999 515024..517159 1 NC_006371.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 517159 3119999 PBPRB0442 Photobacterium profundum SS9 anaerobic ribonucleoside triphosphate reductase YP_132115.1 515024 D 298386 CDS YP_132116.2 161936347 3120001 517260..517733 1 NC_006371.1 activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein 517733 nrdG 3120001 nrdG Photobacterium profundum SS9 anaerobic ribonucleotide reductase-activating protein YP_132116.2 517260 D 298386 CDS YP_132117.1 54302124 3120003 518059..518322 1 NC_006371.1 hypothetical protein 518322 3120003 PBPRB0444 Photobacterium profundum SS9 hypothetical protein YP_132117.1 518059 D 298386 CDS YP_132118.1 54302125 3121836 complement(518410..519204) 1 NC_006371.1 hypothetical protein 519204 3121836 PBPRB0445 Photobacterium profundum SS9 hypothetical protein YP_132118.1 518410 R 298386 CDS YP_132119.1 54302126 3120143 complement(519213..519614) 1 NC_006371.1 hypothetical protein 519614 3120143 PBPRB0446 Photobacterium profundum SS9 hypothetical protein YP_132119.1 519213 R 298386 CDS YP_132120.1 54302127 3120145 520531..521925 1 NC_006371.1 serine transporter 521925 3120145 PBPRB0447 Photobacterium profundum SS9 serine transporter YP_132120.1 520531 D 298386 CDS YP_132121.1 54302128 3120146 complement(522066..522599) 1 NC_006371.1 dihydrofolate reductase 522599 3120146 PBPRB0448 Photobacterium profundum SS9 dihydrofolate reductase YP_132121.1 522066 R 298386 CDS YP_132122.1 54302129 3120147 522786..523352 1 NC_006371.1 TetR family transcriptional regulator 523352 3120147 PBPRB0449 Photobacterium profundum SS9 TetR family transcriptional regulator YP_132122.1 522786 D 298386 CDS YP_132123.1 54302130 3120148 523374..523991 1 NC_006371.1 hypothetical protein 523991 3120148 PBPRB0450 Photobacterium profundum SS9 hypothetical protein YP_132123.1 523374 D 298386 CDS YP_132124.1 54302131 3120149 complement(524261..525826) 1 NC_006371.1 hypothetical protein 525826 3120149 PBPRB0451 Photobacterium profundum SS9 hypothetical protein YP_132124.1 524261 R 298386 CDS YP_132125.1 54302132 3120150 complement(526465..526737) 1 NC_006371.1 hypothetical protein 526737 3120150 PBPRB0452 Photobacterium profundum SS9 hypothetical protein YP_132125.1 526465 R 298386 CDS YP_132126.1 54302133 3120153 complement(526897..527277) 1 NC_006371.1 hypothetical protein 527277 3120153 PBPRB0453 Photobacterium profundum SS9 hypothetical protein YP_132126.1 526897 R 298386 CDS YP_132127.1 54302134 3120152 527490..528677 1 NC_006371.1 catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 528677 3120152 PBPRB0454 Photobacterium profundum SS9 cystathionine beta-lyase YP_132127.1 527490 D 298386 CDS YP_132128.1 54302135 3120154 complement(528827..529387) 1 NC_006371.1 hypothetical protein 529387 3120154 PBPRB0455 Photobacterium profundum SS9 hypothetical protein YP_132128.1 528827 R 298386 CDS YP_132129.1 54302136 3120156 complement(529380..530642) 1 NC_006371.1 predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein; N-glycosyltransferase 530642 3120156 PBPRB0456 Photobacterium profundum SS9 N-glycosyltransferase YP_132129.1 529380 R 298386 CDS YP_132130.1 54302137 3120157 complement(530642..532606) 1 NC_006371.1 hypothetical protein 532606 3120157 PBPRB0457 Photobacterium profundum SS9 hypothetical protein YP_132130.1 530642 R 298386 CDS YP_132131.1 54302138 3120159 complement(532603..535014) 1 NC_006371.1 hypothetical protein 535014 3120159 PBPRB0458 Photobacterium profundum SS9 hypothetical protein YP_132131.1 532603 R 298386 CDS YP_132132.1 54302139 3120158 complement(535409..536293) 1 NC_006371.1 transcriptional regulator 536293 3120158 PBPRB0459 Photobacterium profundum SS9 transcriptional regulator YP_132132.1 535409 R 298386 CDS YP_132133.1 54302140 3120160 complement(536404..537846) 1 NC_006371.1 hyopthetical permease 537846 3120160 PBPRB0460 Photobacterium profundum SS9 hyopthetical permease YP_132133.1 536404 R 298386 CDS YP_132134.1 54302141 3120161 538381..539274 1 NC_006371.1 myo-inositol catabolismprotein iolB 539274 3120161 PBPRB0461 Photobacterium profundum SS9 myo-inositol catabolismprotein iolB YP_132134.1 538381 D 298386 CDS YP_132135.1 54302142 3120289 539421..541295 1 NC_006371.1 acetolactate synthase IolD 541295 3120289 PBPRB0462 Photobacterium profundum SS9 acetolactate synthase IolD YP_132135.1 539421 D 298386 CDS YP_132136.1 54302143 3120162 541343..542536 1 NC_006371.1 oxidoreductase 542536 3120162 PBPRB0463 Photobacterium profundum SS9 oxidoreductase YP_132136.1 541343 D 298386 CDS YP_132137.1 54302144 3120163 542548..543543 1 NC_006371.1 pfkB family carbohydrate kinase 543543 3120163 PBPRB0464 Photobacterium profundum SS9 pfkB family carbohydrate kinase YP_132137.1 542548 D 298386 CDS YP_132138.1 54302145 3120164 544018..544890 1 NC_006371.1 hypothetical protein 544890 3120164 PBPRB0465 Photobacterium profundum SS9 hypothetical protein YP_132138.1 544018 D 298386 CDS YP_132139.1 54302146 3120165 544903..545730 1 NC_006371.1 fructose-1,6-bisphosphate aldolase 545730 3120165 PBPRB0466 Photobacterium profundum SS9 fructose-1,6-bisphosphate aldolase YP_132139.1 544903 D 298386 CDS YP_132140.1 54302147 3120166 545810..546652 1 NC_006371.1 transcriptional regulator 546652 3120166 PBPRB0467 Photobacterium profundum SS9 transcriptional regulator YP_132140.1 545810 D 298386 CDS YP_132141.1 54302148 3120167 complement(546724..547569) 1 NC_006371.1 hypothetical protein 547569 3120167 PBPRB0468 Photobacterium profundum SS9 hypothetical protein YP_132141.1 546724 R 298386 CDS YP_132142.1 54302149 3120168 548056..548886 1 NC_006371.1 hypothetical protein 548886 3120168 PBPRB0469 Photobacterium profundum SS9 hypothetical protein YP_132142.1 548056 D 298386 CDS YP_132143.1 54302150 3120169 549006..549992 1 NC_006371.1 myo-inositol 2-dehydrogenase 549992 3120169 PBPRB0470 Photobacterium profundum SS9 myo-inositol 2-dehydrogenase YP_132143.1 549006 D 298386 CDS YP_132144.1 54302151 3120170 complement(550153..550986) 1 NC_006371.1 transcriptional regulator 550986 3120170 PBPRB0471 Photobacterium profundum SS9 transcriptional regulator YP_132144.1 550153 R 298386 CDS YP_132145.1 54302152 3120171 complement(551216..552232) 1 NC_006371.1 sugar ABC transporter (permease) 552232 3120171 PBPRB0472 Photobacterium profundum SS9 sugar ABC transporter (permease) YP_132145.1 551216 R 298386 CDS YP_132146.1 54302153 3120172 complement(552277..553770) 1 NC_006371.1 galactoside transport ATP-binding protein MglA 553770 3120172 PBPRB0473 Photobacterium profundum SS9 galactoside transport ATP-binding protein MglA YP_132146.1 552277 R 298386 CDS YP_132147.1 54302154 3120173 complement(553843..554856) 1 NC_006371.1 sugar ABC transporter, periplasmic sugar-binding 554856 3120173 PBPRB0474 Photobacterium profundum SS9 sugar ABC transporter, periplasmic sugar-binding YP_132147.1 553843 R 298386 CDS YP_132148.1 54302155 3120178 555776..557683 1 NC_006371.1 carbohydrate kinase 557683 3120178 PBPRB0475 Photobacterium profundum SS9 carbohydrate kinase YP_132148.1 555776 D 298386 CDS YP_132149.1 54302156 3120174 557695..559548 1 NC_006371.1 acetolactate synthase 559548 3120174 PBPRB0476 Photobacterium profundum SS9 acetolactate synthase YP_132149.1 557695 D 298386 CDS YP_132150.1 54302157 3120179 559580..560473 1 NC_006371.1 myo-inositol catabolismprotein iolB 560473 3120179 PBPRB0477 Photobacterium profundum SS9 myo-inositol catabolismprotein iolB YP_132150.1 559580 D 298386 CDS YP_132151.1 54302158 3120180 560485..561993 1 NC_006371.1 aldehyde dehydrogenase 561993 3120180 PBPRB0478 Photobacterium profundum SS9 aldehyde dehydrogenase YP_132151.1 560485 D 298386 CDS YP_132152.1 54302159 3120181 complement(562088..562750) 1 NC_006371.1 hypothetical protein 562750 3120181 PBPRB0479 Photobacterium profundum SS9 hypothetical protein YP_132152.1 562088 R 298386 CDS YP_132153.1 54302160 3120183 complement(562758..563306) 1 NC_006371.1 acetyltransferase 563306 3120183 PBPRB0480 Photobacterium profundum SS9 acetyltransferase YP_132153.1 562758 R 298386 CDS YP_132154.1 54302161 3120184 563398..563652 1 NC_006371.1 hypothetical protein 563652 3120184 PBPRB0481 Photobacterium profundum SS9 hypothetical protein YP_132154.1 563398 D 298386 CDS YP_132155.1 54302162 3120185 563918..564424 1 NC_006371.1 hypothetical protein 564424 3120185 PBPRB0482 Photobacterium profundum SS9 hypothetical protein YP_132155.1 563918 D 298386 CDS YP_132156.1 54302163 3120186 564701..565444 1 NC_006371.1 hypothetical protein 565444 3120186 PBPRB0483 Photobacterium profundum SS9 hypothetical protein YP_132156.1 564701 D 298386 CDS YP_132157.1 54302164 3120187 565479..565874 1 NC_006371.1 hypothetical protein 565874 3120187 PBPRB0484 Photobacterium profundum SS9 hypothetical protein YP_132157.1 565479 D 298386 CDS YP_132158.1 54302165 3120188 complement(565962..566327) 1 NC_006371.1 hypothetical protein 566327 3120188 PBPRB0485 Photobacterium profundum SS9 hypothetical protein YP_132158.1 565962 R 298386 CDS YP_132159.1 54302166 3120017 566999..568804 1 NC_006371.1 hypothetical protein 568804 3120017 PBPRB0486 Photobacterium profundum SS9 hypothetical protein YP_132159.1 566999 D 298386 CDS YP_132160.1 54302167 3120189 569443..569889 1 NC_006371.1 hypothetical protein 569889 3120189 PBPRB0487 Photobacterium profundum SS9 hypothetical protein YP_132160.1 569443 D 298386 CDS YP_132161.1 54302168 3120191 569927..570505 1 NC_006371.1 hypothetical protein 570505 3120191 PBPRB0488 Photobacterium profundum SS9 hypothetical protein YP_132161.1 569927 D 298386 CDS YP_132162.1 54302169 3120192 complement(570816..571166) 1 NC_006371.1 hypothetical protein 571166 3120192 PBPRB0489 Photobacterium profundum SS9 hypothetical protein YP_132162.1 570816 R 298386 CDS YP_132163.1 54302170 3121671 complement(571369..572928) 1 NC_006371.1 hypothetical protein 572928 3121671 PBPRB0490 Photobacterium profundum SS9 hypothetical protein YP_132163.1 571369 R 298386 CDS YP_132164.1 54302171 3120193 complement(572931..574010) 1 NC_006371.1 hypothetical protein 574010 3120193 PBPRB0491 Photobacterium profundum SS9 hypothetical protein YP_132164.1 572931 R 298386 CDS YP_132165.1 54302172 3120195 574288..574884 1 NC_006371.1 hypothetical protein 574884 3120195 PBPRB0492 Photobacterium profundum SS9 hypothetical protein YP_132165.1 574288 D 298386 CDS YP_132166.1 54302173 3120197 complement(575309..575758) 1 NC_006371.1 hypothetical protein 575758 3120197 PBPRB0493 Photobacterium profundum SS9 hypothetical protein YP_132166.1 575309 R 298386 CDS YP_132167.1 54302174 3120199 complement(575960..576556) 1 NC_006371.1 intracellular protease/amidase 576556 3120199 PBPRB0494 Photobacterium profundum SS9 intracellular protease/amidase YP_132167.1 575960 R 298386 CDS YP_132168.1 54302175 3120201 complement(576701..577033) 1 NC_006371.1 hypothetical protein 577033 3120201 PBPRB0495 Photobacterium profundum SS9 hypothetical protein YP_132168.1 576701 R 298386 CDS YP_132169.1 54302176 3120056 577504..578784 1 NC_006371.1 hypothetical protein 578784 3120056 PBPRB0496 Photobacterium profundum SS9 hypothetical protein YP_132169.1 577504 D 298386 CDS YP_132170.1 54302177 3120202 complement(578772..579218) 1 NC_006371.1 hypothetical protein 579218 3120202 PBPRB0497 Photobacterium profundum SS9 hypothetical protein YP_132170.1 578772 R 298386 CDS YP_132171.1 54302178 3120203 579659..580342 1 NC_006371.1 hypothetical protein 580342 3120203 PBPRB0498 Photobacterium profundum SS9 hypothetical protein YP_132171.1 579659 D 298386 CDS YP_132172.1 54302179 3120633 580580..581092 1 NC_006371.1 hypothetical protein 581092 3120633 PBPRB0499 Photobacterium profundum SS9 hypothetical protein YP_132172.1 580580 D 298386 CDS YP_132173.1 54302180 3120204 581353..583188 1 NC_006371.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 583188 secD 3120204 secD Photobacterium profundum SS9 preprotein translocase subunit SecD YP_132173.1 581353 D 298386 CDS YP_132174.1 54302181 3120502 583193..584092 1 NC_006371.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 584092 secF 3120502 secF Photobacterium profundum SS9 preprotein translocase subunit SecF YP_132174.1 583193 D 298386 CDS YP_132175.1 54302182 3120207 584298..584540 1 NC_006371.1 hypothetical protein 584540 3120207 PBPRB0502 Photobacterium profundum SS9 hypothetical protein YP_132175.1 584298 D 298386 CDS YP_132176.1 54302183 3120208 complement(585132..585431) 1 NC_006371.1 hypothetical protein 585431 3120208 PBPRB0503 Photobacterium profundum SS9 hypothetical protein YP_132176.1 585132 R 298386 CDS YP_132177.1 54302184 3120209 complement(585524..587422) 1 NC_006371.1 permease 587422 3120209 PBPRB0504 Photobacterium profundum SS9 permease YP_132177.1 585524 R 298386 CDS YP_132178.1 54302185 3120210 complement(587650..588579) 1 NC_006371.1 hypothetical protein 588579 3120210 PBPRB0505 Photobacterium profundum SS9 hypothetical protein YP_132178.1 587650 R 298386 CDS YP_132179.1 54302186 3120212 complement(588973..589323) 1 NC_006371.1 hypothetical protein 589323 3120212 PBPRB0506 Photobacterium profundum SS9 hypothetical protein YP_132179.1 588973 R 298386 CDS YP_132180.1 54302187 3120213 complement(589602..591527) 1 NC_006371.1 ATP-dependent DNA helicase RecQ 591527 3120213 PBPRB0507 Photobacterium profundum SS9 ATP-dependent DNA helicase RecQ YP_132180.1 589602 R 298386 CDS YP_132181.1 54302188 3120214 complement(591993..593549) 1 NC_006371.1 methyl-accepting chemotaxis protein 593549 3120214 PBPRB0508 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_132181.1 591993 R 298386 CDS YP_132182.1 54302189 3120215 593859..595502 1 NC_006371.1 methyl-accepting chemotaxisprotein 595502 3120215 PBPRB0509 Photobacterium profundum SS9 methyl-accepting chemotaxisprotein YP_132182.1 593859 D 298386 CDS YP_132183.1 54302190 3120216 complement(595618..597312) 1 NC_006371.1 long-chain-fatty-acid-CoA ligase 597312 3120216 PBPRB0510 Photobacterium profundum SS9 long-chain-fatty-acid-CoA ligase YP_132183.1 595618 R 298386 CDS YP_132184.1 54302191 3120217 597620..598360 1 NC_006371.1 hypothetical protein 598360 3120217 PBPRB0511 Photobacterium profundum SS9 hypothetical protein YP_132184.1 597620 D 298386 CDS YP_132185.1 54302192 3120218 598640..599101 1 NC_006371.1 transcriptional regulator LuxT 599101 3120218 PBPRB0512 Photobacterium profundum SS9 transcriptional regulator LuxT YP_132185.1 598640 D 298386 CDS YP_132186.1 54302193 3120221 599422..600828 1 NC_006371.1 hypothetical protein 600828 3120221 PBPRB0513 Photobacterium profundum SS9 hypothetical protein YP_132186.1 599422 D 298386 CDS YP_132187.1 54302194 3120222 600825..601802 1 NC_006371.1 hypothetical protein 601802 3120222 PBPRB0514 Photobacterium profundum SS9 hypothetical protein YP_132187.1 600825 D 298386 CDS YP_132188.1 54302195 3120293 601807..603015 1 NC_006371.1 hypothetical protein 603015 3120293 PBPRB0515 Photobacterium profundum SS9 hypothetical protein YP_132188.1 601807 D 298386 CDS YP_132189.1 54302196 3120223 603012..604184 1 NC_006371.1 hypothetical protein 604184 3120223 PBPRB0516 Photobacterium profundum SS9 hypothetical protein YP_132189.1 603012 D 298386 CDS YP_132190.1 54302197 3120224 complement(604290..604760) 1 NC_006371.1 hypothetical protein 604760 3120224 PBPRB0517 Photobacterium profundum SS9 hypothetical protein YP_132190.1 604290 R 298386 CDS YP_132191.1 54302198 3120225 complement(604855..605628) 1 NC_006371.1 transcriptional regulator 605628 3120225 PBPRB0518 Photobacterium profundum SS9 transcriptional regulator YP_132191.1 604855 R 298386 CDS YP_132192.1 54302199 3120226 606208..606843 1 NC_006371.1 hypothetical protein 606843 3120226 PBPRB0519 Photobacterium profundum SS9 hypothetical protein YP_132192.1 606208 D 298386 CDS YP_132193.1 54302200 3120229 607220..607549 1 NC_006371.1 hypothetical protein 607549 3120229 PBPRB0520 Photobacterium profundum SS9 hypothetical protein YP_132193.1 607220 D 298386 CDS YP_132194.1 54302201 3120227 complement(607673..608740) 1 NC_006371.1 hypothetical protein 608740 3120227 PBPRB0521 Photobacterium profundum SS9 hypothetical protein YP_132194.1 607673 R 298386 CDS YP_132195.1 54302202 3120155 complement(608991..609434) 1 NC_006371.1 heat shock protein HslJ 609434 3120155 PBPRB0522 Photobacterium profundum SS9 heat shock protein HslJ YP_132195.1 608991 R 298386 CDS YP_132196.1 54302203 3120196 complement(609503..609853) 1 NC_006371.1 hypothetical protein 609853 3120196 PBPRB0523 Photobacterium profundum SS9 hypothetical protein YP_132196.1 609503 R 298386 CDS YP_132197.1 54302204 3120230 complement(609865..610173) 1 NC_006371.1 hypothetical protein 610173 3120230 PBPRB0524 Photobacterium profundum SS9 hypothetical protein YP_132197.1 609865 R 298386 CDS YP_132198.1 54302205 3120231 complement(610313..612427) 1 NC_006371.1 hypothetical protein 612427 3120231 PBPRB0525 Photobacterium profundum SS9 hypothetical protein YP_132198.1 610313 R 298386 CDS YP_132199.1 54302206 3121796 612689..613258 1 NC_006371.1 hypothetical protein 613258 3121796 PBPRB0526 Photobacterium profundum SS9 hypothetical protein YP_132199.1 612689 D 298386 CDS YP_132200.1 54302207 3120232 complement(613578..613886) 1 NC_006371.1 hypothetical protein 613886 3120232 PBPRB0527 Photobacterium profundum SS9 hypothetical protein YP_132200.1 613578 R 298386 CDS YP_132201.1 54302208 3120042 complement(614360..615553) 1 NC_006371.1 catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; hydroxyglutarate oxidase 615553 3120042 PBPRB0528 Photobacterium profundum SS9 hydroxyglutarate oxidase YP_132201.1 614360 R 298386 CDS YP_132202.1 54302209 3120233 615784..616275 1 NC_006371.1 acetyltransferase 616275 3120233 PBPRB0529 Photobacterium profundum SS9 acetyltransferase YP_132202.1 615784 D 298386 CDS YP_132203.1 54302210 3120235 complement(616340..616879) 1 NC_006371.1 acetyltransferase 616879 3120235 PBPRB0530 Photobacterium profundum SS9 acetyltransferase YP_132203.1 616340 R 298386 CDS YP_132204.1 54302211 3120236 complement(617192..617635) 1 NC_006371.1 hypothetical protein 617635 3120236 PBPRB0531 Photobacterium profundum SS9 hypothetical protein YP_132204.1 617192 R 298386 CDS YP_132205.1 54302212 3120238 complement(618540..620150) 1 NC_006371.1 hypothetical protein 620150 3120238 PBPRB0532 Photobacterium profundum SS9 hypothetical protein YP_132205.1 618540 R 298386 CDS YP_132206.1 54302213 3120239 620436..621167 1 NC_006371.1 transposase 621167 3120239 PBPRB0533 Photobacterium profundum SS9 transposase YP_132206.1 620436 D 298386 CDS YP_132207.1 54302214 3120240 complement(621155..622525) 1 NC_006371.1 hypothetical protein 622525 3120240 PBPRB0534 Photobacterium profundum SS9 hypothetical protein YP_132207.1 621155 R 298386 CDS YP_132208.1 54302215 3120241 complement(623608..624027) 1 NC_006371.1 hypothetical protein 624027 3120241 PBPRB0535 Photobacterium profundum SS9 hypothetical protein YP_132208.1 623608 R 298386 CDS YP_132209.1 54302216 3120242 complement(624874..625632) 1 NC_006371.1 amino acid ABC transporter 625632 3120242 PBPRB0536 Photobacterium profundum SS9 amino acid ABC transporter YP_132209.1 624874 R 298386 CDS YP_132210.1 54302217 3120243 625712..626263 1 NC_006371.1 two-component sensor 626263 3120243 PBPRB0537 Photobacterium profundum SS9 two-component sensor YP_132210.1 625712 D 298386 CDS YP_132211.1 54302218 3120244 626221..628263 1 NC_006371.1 two-component sensor 628263 3120244 PBPRB0538 Photobacterium profundum SS9 two-component sensor YP_132211.1 626221 D 298386 CDS YP_132212.1 54302219 3120245 complement(628330..628608) 1 NC_006371.1 hypothetical protein 628608 3120245 PBPRB0539 Photobacterium profundum SS9 hypothetical protein YP_132212.1 628330 R 298386 CDS YP_132213.1 54302220 3120246 complement(628615..629811) 1 NC_006371.1 hypothetical protein 629811 3120246 PBPRB0540 Photobacterium profundum SS9 hypothetical protein YP_132213.1 628615 R 298386 CDS YP_132214.1 54302221 3120247 630462..632786 1 NC_006371.1 chitinase 632786 3120247 PBPRB0541 Photobacterium profundum SS9 chitinase YP_132214.1 630462 D 298386 CDS YP_132215.1 54302222 3120249 633178..634014 1 NC_006371.1 ABC transporter ATP-binding protein 634014 3120249 PBPRB0542 Photobacterium profundum SS9 ABC transporter ATP-binding protein YP_132215.1 633178 D 298386 CDS YP_132216.1 54302223 3120250 634011..634877 1 NC_006371.1 hipothetical ABC transporter permease protein 634877 3120250 PBPRB0543 Photobacterium profundum SS9 hipothetical ABC transporter permease protein YP_132216.1 634011 D 298386 CDS YP_132217.1 54302224 3120251 634816..635886 1 NC_006371.1 hypothetical protein 635886 3120251 PBPRB0544 Photobacterium profundum SS9 hypothetical protein YP_132217.1 634816 D 298386 CDS YP_132218.1 54302225 3120252 complement(636032..637162) 1 NC_006371.1 hypothetical protein 637162 3120252 PBPRB0545 Photobacterium profundum SS9 hypothetical protein YP_132218.1 636032 R 298386 CDS YP_132219.1 54302226 3120254 complement(637164..637799) 1 NC_006371.1 hypothetical protein 637799 3120254 PBPRB0546 Photobacterium profundum SS9 hypothetical protein YP_132219.1 637164 R 298386 CDS YP_132220.1 54302227 3120255 638107..638502 1 NC_006371.1 hypothetical protein 638502 3120255 PBPRB0547 Photobacterium profundum SS9 hypothetical protein YP_132220.1 638107 D 298386 CDS YP_132221.1 54302228 3120256 638744..639367 1 NC_006371.1 NAD(P)H oxidoreductase 639367 3120256 PBPRB0548 Photobacterium profundum SS9 NAD(P)H oxidoreductase YP_132221.1 638744 D 298386 CDS YP_132222.1 54302229 3120258 639480..640049 1 NC_006371.1 hypothetical protein 640049 3120258 PBPRB0549 Photobacterium profundum SS9 hypothetical protein YP_132222.1 639480 D 298386 CDS YP_132223.1 54302230 3120259 639946..641178 1 NC_006371.1 TrkA family protein 641178 3120259 PBPRB0550 Photobacterium profundum SS9 TrkA family protein YP_132223.1 639946 D 298386 CDS YP_132224.2 71803679 3120211 641435..642676 1 NC_006371.1 integrase 642676 3120211 PBPRB0551 Photobacterium profundum SS9 integrase YP_132224.2 641435 D 298386 CDS YP_277298.1 71803680 3562287 complement(642718..643005) 1 NC_006371.1 hypothetical protein 643005 3562287 PBPR_B2026 Photobacterium profundum SS9 hypothetical protein YP_277298.1 642718 R 298386 CDS YP_132225.2 71803681 3120260 complement(643031..643633) 1 NC_006371.1 hypothetical protein 643633 3120260 PBPRB0552 Photobacterium profundum SS9 hypothetical protein YP_132225.2 643031 R 298386 CDS YP_132226.1 54302233 3120261 643999..644508 1 NC_006371.1 hypothetical protein 644508 3120261 PBPRB0553 Photobacterium profundum SS9 hypothetical protein YP_132226.1 643999 D 298386 CDS YP_132227.1 54302234 3121912 644520..644903 1 NC_006371.1 hypothetical protein 644903 3121912 PBPRB0554 Photobacterium profundum SS9 hypothetical protein YP_132227.1 644520 D 298386 CDS YP_277299.1 71803682 3562288 644914..645123 1 NC_006371.1 hypothetical protein 645123 3562288 PBPR_B2027 Photobacterium profundum SS9 hypothetical protein YP_277299.1 644914 D 298386 CDS YP_132228.1 54302235 3120262 complement(645430..646380) 1 NC_006371.1 hypothetical protein 646380 3120262 PBPRB0555 Photobacterium profundum SS9 hypothetical protein YP_132228.1 645430 R 298386 CDS YP_277300.1 71803683 3562289 646535..646693 1 NC_006371.1 hypothetical protein 646693 3562289 PBPR_B2028 Photobacterium profundum SS9 hypothetical protein YP_277300.1 646535 D 298386 CDS YP_132229.1 54302236 3120263 647149..647403 1 NC_006371.1 hypothetical protein 647403 3120263 PBPRB0556 Photobacterium profundum SS9 hypothetical protein YP_132229.1 647149 D 298386 CDS YP_277301.1 71803684 3562290 647884..648039 1 NC_006371.1 hypothetical protein 648039 3562290 PBPR_B2029 Photobacterium profundum SS9 hypothetical protein YP_277301.1 647884 D 298386 CDS YP_132230.2 71803685 3120264 648079..648384 1 NC_006371.1 hypotethical transcriptional regulator 648384 3120264 PBPRB0557 Photobacterium profundum SS9 hypotethical transcriptional regulator YP_132230.2 648079 D 298386 CDS YP_132231.1 54302238 3120265 648365..649321 1 NC_006371.1 hypothetical protein 649321 3120265 PBPRB0558 Photobacterium profundum SS9 hypothetical protein YP_132231.1 648365 D 298386 CDS YP_277302.1 71803686 3562281 complement(649590..649823) 1 NC_006371.1 hypothetical protein 649823 3562281 PBPR_B2030 Photobacterium profundum SS9 hypothetical protein YP_277302.1 649590 R 298386 CDS YP_277303.1 71803687 3562282 complement(649826..650002) 1 NC_006371.1 hypothetical protein 650002 3562282 PBPR_B2031 Photobacterium profundum SS9 hypothetical protein YP_277303.1 649826 R 298386 CDS YP_132232.1 54302239 3120270 complement(650013..651059) 1 NC_006371.1 similar to PBPRB0558; Gifsy-1 prophage 651059 3120270 PBPRB0559 Photobacterium profundum SS9 Gifsy-1 prophage YP_132232.1 650013 R 298386 CDS YP_132233.1 54302240 3120266 complement(651071..654517) 1 NC_006371.1 exodeoxyribonuclease VIII 654517 3120266 PBPRB0560 Photobacterium profundum SS9 exodeoxyribonuclease VIII YP_132233.1 651071 R 298386 CDS YP_277304.1 71803688 3562283 complement(654517..654651) 1 NC_006371.1 hypothetical protein 654651 3562283 PBPR_B2032 Photobacterium profundum SS9 hypothetical protein YP_277304.1 654517 R 298386 CDS YP_132234.1 54302241 3120267 complement(654998..655327) 1 NC_006371.1 hypothetical protein 655327 3120267 PBPRB0561 Photobacterium profundum SS9 hypothetical protein YP_132234.1 654998 R 298386 CDS YP_132235.2 71803689 3120182 655456..655677 1 NC_006371.1 hypothetical protein 655677 3120182 PBPRB0562 Photobacterium profundum SS9 hypothetical protein YP_132235.2 655456 D 298386 CDS YP_132236.1 54302243 3120268 655683..656573 1 NC_006371.1 hypothetical protein 656573 3120268 PBPRB0563 Photobacterium profundum SS9 hypothetical protein YP_132236.1 655683 D 298386 CDS YP_277305.1 71803690 3562284 656566..656760 1 NC_006371.1 hypothetical protein 656760 3562284 PBPR_B2033 Photobacterium profundum SS9 hypothetical protein YP_277305.1 656566 D 298386 CDS YP_132237.1 54302244 3120271 656906..657187 1 NC_006371.1 hypothetical protein 657187 3120271 PBPRB0564 Photobacterium profundum SS9 hypothetical protein YP_132237.1 656906 D 298386 CDS YP_277306.1 71803691 3562285 657293..657484 1 NC_006371.1 hypothetical protein 657484 3562285 PBPR_B2034 Photobacterium profundum SS9 hypothetical protein YP_277306.1 657293 D 298386 CDS YP_132238.1 54302245 3120272 657670..658149 1 NC_006371.1 similar to terminase small subunit gp1 found in GenBank Accession Number AAO06064 for Enterobacteria phage epsilon15; terminase small subunit 658149 3120272 PBPRB0565 Photobacterium profundum SS9 terminase small subunit YP_132238.1 657670 D 298386 CDS YP_132239.1 54302246 3120273 658149..659690 1 NC_006371.1 DNA pacase B subunit; similar to terminase large subunit gp2 found in GenBank Accession Number AAO06065 for Enterobacteria phage epsilon15; terminase large subunit 659690 3120273 PBPRB0566 Photobacterium profundum SS9 terminase large subunit YP_132239.1 658149 D 298386 CDS YP_277307.1 71803692 3562286 659706..659915 1 NC_006371.1 hypothetical protein 659915 3562286 PBPR_B2035 Photobacterium profundum SS9 hypothetical protein YP_277307.1 659706 D 298386 CDS YP_132240.1 54302247 3120275 659918..661576 1 NC_006371.1 similar to protein gp4 found in GenBank Accession Number AAO06067 for Enterobacteria phage epsilon15; head-tail connector protein 661576 3120275 PBPRB0567 Photobacterium profundum SS9 head-tail connector protein YP_132240.1 659918 D 298386 CDS YP_132241.1 54302248 3120276 661576..661899 1 NC_006371.1 similar to protein gp5 found in GenBank Accession Number AAO06068 for Enterobacteria phage epsilon15; hypothetical protein 661899 3120276 PBPRB0568 Photobacterium profundum SS9 hypothetical protein YP_132241.1 661576 D 298386 CDS YP_132242.1 54302249 3120279 661889..662722 1 NC_006371.1 similar to endoprotease gp6 found in GenBank Accession Number AAO06069 for Enterobacteria phage epsilon15; endoprotease 662722 3120279 PBPRB0569 Photobacterium profundum SS9 endoprotease YP_132242.1 661889 D 298386 CDS YP_132243.1 54302250 3120278 662737..663726 1 NC_006371.1 similar to protein gp7 found in GenBank Accession Number AAO06070 for Enterobacteria phage epsilon15; hypothetical protein 663726 3120278 PBPRB0570 Photobacterium profundum SS9 hypothetical protein YP_132243.1 662737 D 298386 CDS YP_132244.1 54302251 3120280 663793..664224 1 NC_006371.1 similar to protein gp8 found in GenBank Accession Number AAO06071 Enterobacteria phage epsilon15; hypothetical protein 664224 3120280 PBPRB0571 Photobacterium profundum SS9 hypothetical protein YP_132244.1 663793 D 298386 CDS YP_132245.2 71803693 3120559 664236..664721 1 NC_006371.1 hypothetical protein 664721 3120559 PBPRB0572 Photobacterium profundum SS9 hypothetical protein YP_132245.2 664236 D 298386 CDS YP_132246.1 54302253 3120281 664832..665455 1 NC_006371.1 similar to protein gp11 found in GenBank Accession Number AAO06074 Enterobacteria phage epsilon15; hypothetical protein 665455 3120281 PBPRB0573 Photobacterium profundum SS9 hypothetical protein YP_132246.1 664832 D 298386 CDS YP_132247.1 54302254 3120282 665455..668214 1 NC_006371.1 similar to protein gp12 found in GenBank Accession Number AAO06075 Enterobacteria phage epsilon15; hypothetical protein 668214 3120282 PBPRB0574 Photobacterium profundum SS9 hypothetical protein YP_132247.1 665455 D 298386 CDS YP_277308.1 71803694 3562280 668201..668662 1 NC_006371.1 similar to protein gp13 found in GenBank Accession Number AAO06076 for Enterobacteria phage epsilon15; hypothetical protein 668662 3562280 PBPR_B2036 Photobacterium profundum SS9 hypothetical protein YP_277308.1 668201 D 298386 CDS YP_132248.1 54302255 3120283 668647..669171 1 NC_006371.1 similar to protein gp14 found in GenBank Accession Number AAO06077 Enterobacteria phage epsilon15; hypothetical protein 669171 3120283 PBPRB0575 Photobacterium profundum SS9 hypothetical protein YP_132248.1 668647 D 298386 CDS YP_132249.1 54302256 3120287 669181..670890 1 NC_006371.1 similar to protein gp15 found in GenBank Accession Number AAO06078 for Enterobacteria phage epsilon15; hypothetical protein 670890 3120287 PBPRB0576 Photobacterium profundum SS9 hypothetical protein YP_132249.1 669181 D 298386 CDS YP_132250.1 54302257 3120284 670890..677033 1 NC_006371.1 hypothetical protein 677033 3120284 PBPRB0577 Photobacterium profundum SS9 hypothetical protein YP_132250.1 670890 D 298386 CDS YP_132251.1 54302258 3120285 677177..679552 1 NC_006371.1 similar to tail fiber protein gp20 found in GenBank Accession Number AAO06083 for Enterobacteria phage epsilon15; tail fiber protein 679552 3120285 PBPRB0578 Photobacterium profundum SS9 tail fiber protein YP_132251.1 677177 D 298386 CDS YP_132252.1 54302259 3120288 complement(679818..681944) 1 NC_006371.1 toxin secretion ATP-binding protein 681944 3120288 PBPRB0579 Photobacterium profundum SS9 toxin secretion ATP-binding protein YP_132252.1 679818 R 298386 CDS YP_132253.1 54302260 3120292 complement(681941..683893) 1 NC_006371.1 hypothetical protein 683893 3120292 PBPRB0580 Photobacterium profundum SS9 hypothetical protein YP_132253.1 681941 R 298386 CDS YP_132254.1 54302261 3120290 complement(683890..684555) 1 NC_006371.1 hypothetical protein 684555 3120290 PBPRB0581 Photobacterium profundum SS9 hypothetical protein YP_132254.1 683890 R 298386 CDS YP_132255.1 54302262 3120291 complement(684584..685174) 1 NC_006371.1 outer membrane protein 685174 3120291 PBPRB0582 Photobacterium profundum SS9 outer membrane protein YP_132255.1 684584 R 298386 CDS YP_132256.1 54302263 3120294 complement(685192..686505) 1 NC_006371.1 agglutination protein 686505 3120294 PBPRB0583 Photobacterium profundum SS9 agglutination protein YP_132256.1 685192 R 298386 CDS YP_132257.1 54302264 3120295 complement(686511..687941) 1 NC_006371.1 HlyD family secretion protein 687941 3120295 PBPRB0584 Photobacterium profundum SS9 HlyD family secretion protein YP_132257.1 686511 R 298386 CDS YP_132258.1 54302265 3120296 688506..692972 1 NC_006371.1 hypothetical protein 692972 3120296 PBPRB0585 Photobacterium profundum SS9 hypothetical protein YP_132258.1 688506 D 298386 CDS YP_132259.1 54302266 3120297 693087..693440 1 NC_006371.1 hypothetical protein 693440 3120297 PBPRB0586 Photobacterium profundum SS9 hypothetical protein YP_132259.1 693087 D 298386 CDS YP_132260.1 54302267 3120299 693409..694584 1 NC_006371.1 hypothetical protein 694584 3120299 PBPRB0587 Photobacterium profundum SS9 hypothetical protein YP_132260.1 693409 D 298386 CDS YP_132261.1 54302268 3120300 complement(693432..693803) 1 NC_006371.1 hypothetical protein 693803 3120300 PBPRB0588 Photobacterium profundum SS9 hypothetical protein YP_132261.1 693432 R 298386 CDS YP_132262.1 54302269 3120301 complement(694188..694454) 1 NC_006371.1 hypothetical protein 694454 3120301 PBPRB0589 Photobacterium profundum SS9 hypothetical protein YP_132262.1 694188 R 298386 CDS YP_132263.1 54302270 3121474 694454..708508 1 NC_006371.1 hypothetical protein 708508 3121474 PBPRB0590 Photobacterium profundum SS9 hypothetical protein YP_132263.1 694454 D 298386 CDS YP_132264.1 54302271 3120298 708774..710108 1 NC_006371.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 710108 3120298 PBPRB0591 Photobacterium profundum SS9 succinylarginine dihydrolase YP_132264.1 708774 D 298386 CDS YP_132265.1 54302272 3120303 710516..710893 1 NC_006371.1 hypothetical protein 710893 3120303 PBPRB0592 Photobacterium profundum SS9 hypothetical protein YP_132265.1 710516 D 298386 CDS YP_132266.1 54302273 3120176 710890..712377 1 NC_006371.1 hypothetical protein 712377 3120176 PBPRB0593 Photobacterium profundum SS9 hypothetical protein YP_132266.1 710890 D 298386 CDS YP_132267.1 54302274 3120304 712794..713468 1 NC_006371.1 hypothetical protein 713468 3120304 PBPRB0594 Photobacterium profundum SS9 hypothetical protein YP_132267.1 712794 D 298386 CDS YP_132268.1 54302275 3120305 713499..714494 1 NC_006371.1 hypothetical protein 714494 3120305 PBPRB0595 Photobacterium profundum SS9 hypothetical protein YP_132268.1 713499 D 298386 CDS YP_132269.1 54302276 3120306 complement(714586..714969) 1 NC_006371.1 glyoxylase I family protein 714969 3120306 PBPRB0596 Photobacterium profundum SS9 glyoxylase I family protein YP_132269.1 714586 R 298386 CDS YP_132270.1 54302277 3120307 complement(715141..716250) 1 NC_006371.1 N-ethylmaleimide reductase 716250 3120307 PBPRB0597 Photobacterium profundum SS9 N-ethylmaleimide reductase YP_132270.1 715141 R 298386 CDS YP_132271.1 54302278 3120308 716399..717313 1 NC_006371.1 transcriptional regulator 717313 3120308 PBPRB0598 Photobacterium profundum SS9 transcriptional regulator YP_132271.1 716399 D 298386 CDS YP_132272.1 54302279 3120309 717727..718248 1 NC_006371.1 nucleoprotein/polynucleotide-associated enzyme 718248 3120309 PBPRB0599 Photobacterium profundum SS9 nucleoprotein/polynucleotide-associated enzyme YP_132272.1 717727 D 298386 CDS YP_132273.1 54302280 3120310 complement(718444..719529) 1 NC_006371.1 hypothetical protein 719529 3120310 PBPRB0600 Photobacterium profundum SS9 hypothetical protein YP_132273.1 718444 R 298386 CDS YP_132274.1 54302281 3120311 complement(719556..720524) 1 NC_006371.1 tight adherence TadC-like transmembrane protein 720524 3120311 PBPRB0601 Photobacterium profundum SS9 tight adherence TadC-like transmembrane protein YP_132274.1 719556 R 298386 CDS YP_132275.1 54302282 3120312 complement(720526..721392) 1 NC_006371.1 Flp pilus assembly protein TadB 721392 3120312 PBPRB0602 Photobacterium profundum SS9 Flp pilus assembly protein TadB YP_132275.1 720526 R 298386 CDS YP_132276.1 54302283 3120313 complement(721500..722888) 1 NC_006371.1 pilus assembly protein 722888 3120313 PBPRB0603 Photobacterium profundum SS9 pilus assembly protein YP_132276.1 721500 R 298386 CDS YP_132277.1 54302284 3120314 complement(722891..724129) 1 NC_006371.1 hypothetical protein 724129 3120314 PBPRB0604 Photobacterium profundum SS9 hypothetical protein YP_132277.1 722891 R 298386 CDS YP_132278.1 54302285 3120315 complement(724143..724631) 1 NC_006371.1 hypothetical protein 724631 3120315 PBPRB0605 Photobacterium profundum SS9 hypothetical protein YP_132278.1 724143 R 298386 CDS YP_132279.1 54302286 3120316 complement(724631..725077) 1 NC_006371.1 hypothetical protein 725077 3120316 PBPRB0606 Photobacterium profundum SS9 hypothetical protein YP_132279.1 724631 R 298386 CDS YP_132280.1 54302287 3120317 complement(725077..726387) 1 NC_006371.1 hypothetical protein 726387 3120317 PBPRB0607 Photobacterium profundum SS9 hypothetical protein YP_132280.1 725077 R 298386 CDS YP_132281.1 54302288 3120318 complement(726688..727341) 1 NC_006371.1 pilus assembly transmembrane protein 727341 3120318 PBPRB0608 Photobacterium profundum SS9 pilus assembly transmembrane protein YP_132281.1 726688 R 298386 CDS YP_132282.1 54302289 3120319 complement(727348..728439) 1 NC_006371.1 hypothetical protein 728439 3120319 PBPRB0609 Photobacterium profundum SS9 hypothetical protein YP_132282.1 727348 R 298386 CDS YP_132283.1 54302290 3120320 complement(728676..729566) 1 NC_006371.1 Flp pilus assembly protein 729566 3120320 PBPRB0610 Photobacterium profundum SS9 Flp pilus assembly protein YP_132283.1 728676 R 298386 CDS YP_132284.1 54302291 3120321 complement(729585..730379) 1 NC_006371.1 Flp pilus assembly protein 730379 3120321 PBPRB0611 Photobacterium profundum SS9 Flp pilus assembly protein YP_132284.1 729585 R 298386 CDS YP_132285.1 54302292 3120322 complement(730372..731718) 1 NC_006371.1 hypothetical protein 731718 3120322 PBPRB0612 Photobacterium profundum SS9 hypothetical protein YP_132285.1 730372 R 298386 CDS YP_132286.1 54302293 3120323 complement(731734..732231) 1 NC_006371.1 hypothetical protein 732231 3120323 PBPRB0613 Photobacterium profundum SS9 hypothetical protein YP_132286.1 731734 R 298386 CDS YP_132287.1 54302294 3120326 733007..734716 1 NC_006371.1 phosphomannomutase 734716 3120326 PBPRB0614 Photobacterium profundum SS9 phosphomannomutase YP_132287.1 733007 D 298386 CDS YP_132288.1 54302295 3120327 complement(734836..735282) 1 NC_006371.1 hypothetical protein 735282 3120327 PBPRB0615 Photobacterium profundum SS9 hypothetical protein YP_132288.1 734836 R 298386 CDS YP_132289.1 54302296 3120330 735560..737950 1 NC_006371.1 carboxypeptidase 737950 3120330 PBPRB0616 Photobacterium profundum SS9 carboxypeptidase YP_132289.1 735560 D 298386 CDS YP_132290.1 54302297 3120329 738043..738615 1 NC_006371.1 MutT/nudix family protein 738615 3120329 PBPRB0617 Photobacterium profundum SS9 MutT/nudix family protein YP_132290.1 738043 D 298386 CDS YP_132291.1 54302298 3120331 739113..740186 1 NC_006371.1 hypothetical protein 740186 3120331 PBPRB0618 Photobacterium profundum SS9 hypothetical protein YP_132291.1 739113 D 298386 CDS YP_132292.1 54302299 3120335 740179..740487 1 NC_006371.1 hypothetical protein 740487 3120335 PBPRB0619 Photobacterium profundum SS9 hypothetical protein YP_132292.1 740179 D 298386 CDS YP_132293.1 54302300 3120336 complement(740492..742057) 1 NC_006371.1 hypothetical protein 742057 3120336 PBPRB0620 Photobacterium profundum SS9 hypothetical protein YP_132293.1 740492 R 298386 CDS YP_132294.1 54302301 3120673 742237..745362 1 NC_006371.1 hypothetical protein 745362 3120673 PBPRB0621 Photobacterium profundum SS9 hypothetical protein YP_132294.1 742237 D 298386 CDS YP_132295.1 54302302 3120338 745371..745658 1 NC_006371.1 hypothetical protein 745658 3120338 PBPRB0622 Photobacterium profundum SS9 hypothetical protein YP_132295.1 745371 D 298386 CDS YP_132296.1 54302303 3120346 745649..746047 1 NC_006371.1 hypothetical protein 746047 3120346 PBPRB0623 Photobacterium profundum SS9 hypothetical protein YP_132296.1 745649 D 298386 CDS YP_132297.1 54302304 3120348 746350..746982 1 NC_006371.1 hypothetical protein 746982 3120348 PBPRB0624 Photobacterium profundum SS9 hypothetical protein YP_132297.1 746350 D 298386 CDS YP_132298.1 54302305 3120349 747220..747603 1 NC_006371.1 hypothetical protein 747603 3120349 PBPRB0625 Photobacterium profundum SS9 hypothetical protein YP_132298.1 747220 D 298386 CDS YP_132299.1 54302306 3120350 747707..748300 1 NC_006371.1 hypothetical protein 748300 3120350 PBPRB0626 Photobacterium profundum SS9 hypothetical protein YP_132299.1 747707 D 298386 CDS YP_132300.1 54302307 3120352 748628..749644 1 NC_006371.1 transposase 749644 3120352 PBPRB0627 Photobacterium profundum SS9 transposase YP_132300.1 748628 D 298386 CDS YP_132301.1 54302308 3120356 750100..750717 1 NC_006371.1 fumarylacetoacetate hydrolase family protein 750717 3120356 PBPRB0628 Photobacterium profundum SS9 fumarylacetoacetate hydrolase family protein YP_132301.1 750100 D 298386 CDS YP_132302.1 54302309 3120357 751031..751300 1 NC_006371.1 hypothetical protein 751300 3120357 PBPRB0629 Photobacterium profundum SS9 hypothetical protein YP_132302.1 751031 D 298386 CDS YP_132303.1 54302310 3120359 complement(751412..752890) 1 NC_006371.1 hypothetical protein 752890 3120359 PBPRB0630 Photobacterium profundum SS9 hypothetical protein YP_132303.1 751412 R 298386 CDS YP_132304.1 54302311 3120220 complement(752896..754287) 1 NC_006371.1 hypothetical protein 754287 3120220 PBPRB0631 Photobacterium profundum SS9 hypothetical protein YP_132304.1 752896 R 298386 CDS YP_132305.1 54302312 3120360 754518..754940 1 NC_006371.1 hypothetical protein 754940 3120360 PBPRB0632 Photobacterium profundum SS9 hypothetical protein YP_132305.1 754518 D 298386 CDS YP_132306.1 54302313 3120022 755214..755804 1 NC_006371.1 hypothetical protein 755804 3120022 PBPRB0633 Photobacterium profundum SS9 hypothetical protein YP_132306.1 755214 D 298386 CDS YP_132307.1 54302314 3120362 complement(756223..756648) 1 NC_006371.1 hypothetical protein 756648 3120362 PBPRB0634 Photobacterium profundum SS9 hypothetical protein YP_132307.1 756223 R 298386 CDS YP_132308.1 54302315 3120365 complement(756755..758365) 1 NC_006371.1 hypothetical protein 758365 3120365 PBPRB0635 Photobacterium profundum SS9 hypothetical protein YP_132308.1 756755 R 298386 CDS YP_132309.1 54302316 3120368 complement(758477..758983) 1 NC_006371.1 metal-dependent hydrolase 758983 3120368 PBPRB0636 Photobacterium profundum SS9 metal-dependent hydrolase YP_132309.1 758477 R 298386 CDS YP_132310.1 54302317 3120372 759308..759760 1 NC_006371.1 hypothetical protein 759760 3120372 PBPRB0637 Photobacterium profundum SS9 hypothetical protein YP_132310.1 759308 D 298386 CDS YP_132311.1 54302318 3120373 759923..761371 1 NC_006371.1 succinate-semialdehyde dehydrogenase 761371 3120373 PBPRB0638 Photobacterium profundum SS9 succinate-semialdehyde dehydrogenase YP_132311.1 759923 D 298386 CDS YP_132312.1 54302319 3120375 761642..762175 1 NC_006371.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 762175 mogA 3120375 mogA Photobacterium profundum SS9 molybdenum cofactor biosynthesis protein MogA YP_132312.1 761642 D 298386 CDS YP_132313.1 54302320 3120376 762244..762927 1 NC_006371.1 hypothetical protein 762927 3120376 PBPRB0640 Photobacterium profundum SS9 hypothetical protein YP_132313.1 762244 D 298386 CDS YP_132314.1 54302321 3120377 complement(763042..764508) 1 NC_006371.1 hypothetical protein 764508 3120377 PBPRB0641 Photobacterium profundum SS9 hypothetical protein YP_132314.1 763042 R 298386 CDS YP_132315.1 54302322 3120378 765310..766284 1 NC_006371.1 outer membrane protein OmpA 766284 3120378 PBPRB0642 Photobacterium profundum SS9 outer membrane protein OmpA YP_132315.1 765310 D 298386 CDS YP_132316.1 54302323 3121900 complement(766525..767199) 1 NC_006371.1 cytochrome c-type protein 767199 3121900 PBPRB0643 Photobacterium profundum SS9 cytochrome c-type protein YP_132316.1 766525 R 298386 CDS YP_132317.1 54302324 3120380 complement(767192..767887) 1 NC_006371.1 hypothetical protein 767887 3120380 PBPRB0644 Photobacterium profundum SS9 hypothetical protein YP_132317.1 767192 R 298386 CDS YP_132318.1 54302325 3120383 complement(767919..769445) 1 NC_006371.1 hypothetical protein 769445 3120383 PBPRB0645 Photobacterium profundum SS9 hypothetical protein YP_132318.1 767919 R 298386 CDS YP_132319.1 54302326 3120385 complement(769442..770029) 1 NC_006371.1 hypothetical protein 770029 3120385 PBPRB0646 Photobacterium profundum SS9 hypothetical protein YP_132319.1 769442 R 298386 CDS YP_132320.1 54302327 3120389 complement(770041..770673) 1 NC_006371.1 hypothetical protein 770673 3120389 PBPRB0647 Photobacterium profundum SS9 hypothetical protein YP_132320.1 770041 R 298386 CDS YP_132321.1 54302328 3120390 complement(770683..771747) 1 NC_006371.1 ferredoxin-type protein 771747 3120390 PBPRB0648 Photobacterium profundum SS9 ferredoxin-type protein YP_132321.1 770683 R 298386 CDS YP_132322.1 54302329 3120391 complement(771747..772352) 1 NC_006371.1 ferredoxin-type protein napG 772352 3120391 PBPRB0649 Photobacterium profundum SS9 ferredoxin-type protein napG YP_132322.1 771747 R 298386 CDS YP_132323.1 54302330 3120394 complement(772526..775225) 1 NC_006371.1 hypothetical protein 775225 3120394 PBPRB0650 Photobacterium profundum SS9 hypothetical protein YP_132323.1 772526 R 298386 CDS YP_132324.1 54302331 3120398 complement(775240..775890) 1 NC_006371.1 hypothetical protein 775890 3120398 PBPRB0651 Photobacterium profundum SS9 hypothetical protein YP_132324.1 775240 R 298386 CDS YP_132325.1 54302332 3120403 776320..778674 1 NC_006371.1 hypothetical protein 778674 3120403 PBPRB0652 Photobacterium profundum SS9 hypothetical protein YP_132325.1 776320 D 298386 CDS YP_132326.1 54302333 3120404 complement(778767..780356) 1 NC_006371.1 methyl-accepting chemotaxis protein 780356 3120404 PBPRB0653 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_132326.1 778767 R 298386 CDS YP_132327.1 54302334 3120405 780609..780935 1 NC_006371.1 hypothetical protein 780935 3120405 PBPRB0654 Photobacterium profundum SS9 hypothetical protein YP_132327.1 780609 D 298386 CDS YP_132328.1 54302335 3120408 781021..781323 1 NC_006371.1 transposase 781323 3120408 PBPRB0655 Photobacterium profundum SS9 transposase YP_132328.1 781021 D 298386 CDS YP_132329.1 54302336 3120412 complement(781357..783006) 1 NC_006371.1 hypothetical protein 783006 3120412 PBPRB0656 Photobacterium profundum SS9 hypothetical protein YP_132329.1 781357 R 298386 CDS YP_132330.1 54302337 3120415 complement(783369..784553) 1 NC_006371.1 transposase 784553 3120415 PBPRB0657 Photobacterium profundum SS9 transposase YP_132330.1 783369 R 298386 CDS YP_132331.1 54302338 3120417 784625..785890 1 NC_006371.1 hypothetical protein 785890 3120417 PBPRB0658 Photobacterium profundum SS9 hypothetical protein YP_132331.1 784625 D 298386 CDS YP_132332.1 54302339 3119992 786152..786682 1 NC_006371.1 hypothetical protein 786682 3119992 PBPRB0659 Photobacterium profundum SS9 hypothetical protein YP_132332.1 786152 D 298386 CDS YP_132333.1 54302340 3120418 787017..787553 1 NC_006371.1 hypothetical protein 787553 3120418 PBPRB0660 Photobacterium profundum SS9 hypothetical protein YP_132333.1 787017 D 298386 CDS YP_132334.1 54302341 3120419 complement(787715..788506) 1 NC_006371.1 hypothetical protein 788506 3120419 PBPRB0661 Photobacterium profundum SS9 hypothetical protein YP_132334.1 787715 R 298386 CDS YP_132335.1 54302342 3120432 788740..789174 1 NC_006371.1 hypothetical protein 789174 3120432 PBPRB0662 Photobacterium profundum SS9 hypothetical protein YP_132335.1 788740 D 298386 CDS YP_132336.1 54302343 3120435 789175..789411 1 NC_006371.1 hypothetical protein 789411 3120435 PBPRB0663 Photobacterium profundum SS9 hypothetical protein YP_132336.1 789175 D 298386 CDS YP_132337.1 54302344 3120433 789677..790570 1 NC_006371.1 hypothetical protein 790570 3120433 PBPRB0664 Photobacterium profundum SS9 hypothetical protein YP_132337.1 789677 D 298386 CDS YP_132338.1 54302345 3120442 790650..791267 1 NC_006371.1 hypothetical protein 791267 3120442 PBPRB0665 Photobacterium profundum SS9 hypothetical protein YP_132338.1 790650 D 298386 CDS YP_132339.1 54302346 3119922 complement(791352..792176) 1 NC_006371.1 hypothetical protein 792176 3119922 PBPRB0666 Photobacterium profundum SS9 hypothetical protein YP_132339.1 791352 R 298386 CDS YP_132340.1 54302347 3120445 792370..792819 1 NC_006371.1 cytochrome c 792819 3120445 PBPRB0667 Photobacterium profundum SS9 cytochrome c YP_132340.1 792370 D 298386 CDS YP_132341.1 54302348 3120452 complement(792937..793620) 1 NC_006371.1 b-type cytochrome 793620 3120452 PBPRB0668 Photobacterium profundum SS9 b-type cytochrome YP_132341.1 792937 R 298386 CDS YP_132342.1 54302349 3120459 complement(793837..794157) 1 NC_006371.1 hypothetical protein 794157 3120459 PBPRB0669 Photobacterium profundum SS9 hypothetical protein YP_132342.1 793837 R 298386 CDS YP_132343.1 54302350 3120110 794359..794625 1 NC_006371.1 hypothetical protein 794625 3120110 PBPRB0670 Photobacterium profundum SS9 hypothetical protein YP_132343.1 794359 D 298386 CDS YP_132344.1 54302351 3120461 794856..795806 1 NC_006371.1 hypothetical protein 795806 3120461 PBPRB0671 Photobacterium profundum SS9 hypothetical protein YP_132344.1 794856 D 298386 CDS YP_132345.1 54302352 3120462 complement(795831..796130) 1 NC_006371.1 isomerase 796130 3120462 PBPRB0672 Photobacterium profundum SS9 isomerase YP_132345.1 795831 R 298386 CDS YP_132346.1 54302353 3120465 complement(796543..797832) 1 NC_006371.1 hypothetical protein 797832 3120465 PBPRB0673 Photobacterium profundum SS9 hypothetical protein YP_132346.1 796543 R 298386 CDS YP_132347.1 54302354 3120472 complement(798219..798671) 1 NC_006371.1 hypothetical protein 798671 3120472 PBPRB0674 Photobacterium profundum SS9 hypothetical protein YP_132347.1 798219 R 298386 CDS YP_132348.1 54302355 3120473 798923..799870 1 NC_006371.1 sensory transduction system regulatory protein 799870 3120473 PBPRB0675 Photobacterium profundum SS9 sensory transduction system regulatory protein YP_132348.1 798923 D 298386 CDS YP_132349.1 54302356 3120237 800107..800775 1 NC_006371.1 hypothetical protein 800775 3120237 PBPRB0676 Photobacterium profundum SS9 hypothetical protein YP_132349.1 800107 D 298386 CDS YP_132350.1 54302357 3120595 800861..801211 1 NC_006371.1 hypothetical protein 801211 3120595 PBPRB0677 Photobacterium profundum SS9 hypothetical protein YP_132350.1 800861 D 298386 CDS YP_132351.1 54302358 3120480 801537..802076 1 NC_006371.1 hypothetical protein 802076 3120480 PBPRB0678 Photobacterium profundum SS9 hypothetical protein YP_132351.1 801537 D 298386 CDS YP_132352.1 54302359 3120482 complement(802157..802408) 1 NC_006371.1 hypothetical protein 802408 3120482 PBPRB0679 Photobacterium profundum SS9 hypothetical protein YP_132352.1 802157 R 298386 CDS YP_132353.1 54302360 3120483 802562..803215 1 NC_006371.1 hypothetical protein 803215 3120483 PBPRB0680 Photobacterium profundum SS9 hypothetical protein YP_132353.1 802562 D 298386 CDS YP_132354.1 54302361 3120485 complement(803324..803992) 1 NC_006371.1 glutathione S-transferase 803992 3120485 PBPRB0681 Photobacterium profundum SS9 glutathione S-transferase YP_132354.1 803324 R 298386 CDS YP_132355.1 54302362 3120486 complement(804045..804656) 1 NC_006371.1 glutathione S-transferase 804656 3120486 PBPRB0682 Photobacterium profundum SS9 glutathione S-transferase YP_132355.1 804045 R 298386 CDS YP_132356.1 54302363 3120490 804767..805354 1 NC_006371.1 TetR family transcriptional regulator 805354 3120490 PBPRB0683 Photobacterium profundum SS9 TetR family transcriptional regulator YP_132356.1 804767 D 298386 CDS YP_132357.1 54302364 3120496 complement(805455..806123) 1 NC_006371.1 transcriptional activator 806123 3120496 PBPRB0684 Photobacterium profundum SS9 transcriptional activator YP_132357.1 805455 R 298386 CDS YP_132358.1 54302365 3120733 complement(806159..807100) 1 NC_006371.1 ABC transporter substrate-binding protein 807100 3120733 PBPRB0685 Photobacterium profundum SS9 ABC transporter substrate-binding protein YP_132358.1 806159 R 298386 CDS YP_132359.1 54302366 3120498 complement(807188..808066) 1 NC_006371.1 ABC transporter permease protein 808066 3120498 PBPRB0686 Photobacterium profundum SS9 ABC transporter permease protein YP_132359.1 807188 R 298386 CDS YP_132360.1 54302367 3120618 complement(808002..808784) 1 NC_006371.1 hypothetical protein 808784 3120618 PBPRB0687 Photobacterium profundum SS9 hypothetical protein YP_132360.1 808002 R 298386 CDS YP_132361.1 54302368 3120499 complement(808799..809629) 1 NC_006371.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 809629 3120499 PBPRB0688 Photobacterium profundum SS9 phosphomethylpyrimidine kinase YP_132361.1 808799 R 298386 CDS YP_132362.1 54302369 3120500 complement(809990..810559) 1 NC_006371.1 phnA protein 810559 3120500 PBPRB0689 Photobacterium profundum SS9 phnA protein YP_132362.1 809990 R 298386 CDS YP_132363.1 54302370 3120716 complement(811022..811333) 1 NC_006371.1 hypothetical protein 811333 3120716 PBPRB0691 Photobacterium profundum SS9 hypothetical protein YP_132363.1 811022 R 298386 CDS YP_132364.1 54302371 3120508 811601..812782 1 NC_006371.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 812782 3120508 PBPRB0692 Photobacterium profundum SS9 aromatic amino acid aminotransferase YP_132364.1 811601 D 298386 CDS YP_132365.1 54302372 3120513 complement(813154..813498) 1 NC_006371.1 hypothetical protein 813498 3120513 PBPRB0693 Photobacterium profundum SS9 hypothetical protein YP_132365.1 813154 R 298386 CDS YP_132366.1 54302373 3120514 813887..814699 1 NC_006371.1 hypothetical protein 814699 3120514 PBPRB0694 Photobacterium profundum SS9 hypothetical protein YP_132366.1 813887 D 298386 CDS YP_132367.1 54302374 3120515 814701..816068 1 NC_006371.1 biopolymer transport proteinexbb-related protein 816068 3120515 PBPRB0695 Photobacterium profundum SS9 biopolymer transport proteinexbb-related protein YP_132367.1 814701 D 298386 CDS YP_132368.1 54302375 3120518 816068..816598 1 NC_006371.1 TonB system transport protein ExbB2 816598 3120518 PBPRB0696 Photobacterium profundum SS9 TonB system transport protein ExbB2 YP_132368.1 816068 D 298386 CDS YP_132369.1 54302376 3120519 816598..817002 1 NC_006371.1 TonB system transport protein ExbD2 817002 3120519 PBPRB0697 Photobacterium profundum SS9 TonB system transport protein ExbD2 YP_132369.1 816598 D 298386 CDS YP_132370.1 54302377 3120523 817002..817673 1 NC_006371.1 TonB2 protein 817673 3120523 PBPRB0698 Photobacterium profundum SS9 TonB2 protein YP_132370.1 817002 D 298386 CDS YP_132371.1 54302378 3120525 817670..818845 1 NC_006371.1 hypothetical protein 818845 3120525 PBPRB0699 Photobacterium profundum SS9 hypothetical protein YP_132371.1 817670 D 298386 CDS YP_132372.1 54302379 3120526 818930..819598 1 NC_006371.1 transcriptional regulator CpxR 819598 3120526 PBPRB0700 Photobacterium profundum SS9 transcriptional regulator CpxR YP_132372.1 818930 D 298386 CDS YP_132373.1 54302380 3120527 819630..821021 1 NC_006371.1 two-component system sensor kinase 821021 3120527 PBPRB0701 Photobacterium profundum SS9 two-component system sensor kinase YP_132373.1 819630 D 298386 CDS YP_132374.1 54302381 3120533 complement(821117..822964) 1 NC_006371.1 oligoendopeptidase F 822964 3120533 PBPRB0702 Photobacterium profundum SS9 oligoendopeptidase F YP_132374.1 821117 R 298386 CDS YP_132375.1 54302382 3120534 823180..823710 1 NC_006371.1 acetyltransferase 823710 3120534 PBPRB0703 Photobacterium profundum SS9 acetyltransferase YP_132375.1 823180 D 298386 CDS YP_132376.1 54302383 3120541 complement(823782..826091) 1 NC_006371.1 hypothetical protein 826091 3120541 PBPRB0704 Photobacterium profundum SS9 hypothetical protein YP_132376.1 823782 R 298386 CDS YP_132377.1 54302384 3120542 complement(826148..827020) 1 NC_006371.1 hypothetical protein 827020 3120542 PBPRB0705 Photobacterium profundum SS9 hypothetical protein YP_132377.1 826148 R 298386 CDS YP_132378.1 54302385 3120543 complement(827053..827721) 1 NC_006371.1 transcriptional regulator 827721 3120543 PBPRB0706 Photobacterium profundum SS9 transcriptional regulator YP_132378.1 827053 R 298386 CDS YP_132379.1 54302386 3120544 complement(827697..829163) 1 NC_006371.1 sensor histidine kinase 829163 3120544 PBPRB0707 Photobacterium profundum SS9 sensor histidine kinase YP_132379.1 827697 R 298386 CDS YP_132380.1 54302387 3120546 complement(829373..832039) 1 NC_006371.1 hypothetical protein 832039 3120546 PBPRB0708 Photobacterium profundum SS9 hypothetical protein YP_132380.1 829373 R 298386 CDS YP_132381.1 54302388 3120549 complement(832042..833580) 1 NC_006371.1 hypothetical protein 833580 3120549 PBPRB0709 Photobacterium profundum SS9 hypothetical protein YP_132381.1 832042 R 298386 CDS YP_132382.1 54302389 3120555 complement(833577..834575) 1 NC_006371.1 hypothetical protein 834575 3120555 PBPRB0710 Photobacterium profundum SS9 hypothetical protein YP_132382.1 833577 R 298386 CDS YP_132383.1 54302390 3120562 834757..835860 1 NC_006371.1 carboxypeptidase G2 835860 3120562 PBPRB0711 Photobacterium profundum SS9 carboxypeptidase G2 YP_132383.1 834757 D 298386 CDS YP_132384.1 54302391 3120569 complement(835941..836879) 1 NC_006371.1 transcriptional regulator 836879 3120569 PBPRB0712 Photobacterium profundum SS9 transcriptional regulator YP_132384.1 835941 R 298386 CDS YP_132385.1 54302392 3121584 complement(837159..837782) 1 NC_006371.1 hypothetical protein 837782 3121584 PBPRB0713 Photobacterium profundum SS9 hypothetical protein YP_132385.1 837159 R 298386 CDS YP_132386.1 54302393 3120570 complement(837890..839026) 1 NC_006371.1 ATPase component, ABC-type sugar transport systems 839026 3120570 PBPRB0714 Photobacterium profundum SS9 ATPase component, ABC-type sugar transport systems YP_132386.1 837890 R 298386 CDS YP_132387.1 54302394 3121541 complement(839026..839940) 1 NC_006371.1 maltose ABC transporter permease 839940 3121541 PBPRB0715 Photobacterium profundum SS9 maltose ABC transporter permease YP_132387.1 839026 R 298386 CDS YP_132388.1 54302395 3120591 complement(839940..841238) 1 NC_006371.1 sugar ABC transporter permease protein 841238 3120591 PBPRB0716 Photobacterium profundum SS9 sugar ABC transporter permease protein YP_132388.1 839940 R 298386 CDS YP_132389.1 54302396 3120571 complement(841354..842487) 1 NC_006371.1 maltose/maltodextrin-binding protein 842487 3120571 PBPRB0717 Photobacterium profundum SS9 maltose/maltodextrin-binding protein YP_132389.1 841354 R 298386 CDS YP_132390.1 54302397 3120577 843314..844288 1 NC_006371.1 periplasmic binding protein 844288 3120577 PBPRB0718 Photobacterium profundum SS9 periplasmic binding protein YP_132390.1 843314 D 298386 CDS YP_132391.1 54302398 3120582 844322..845842 1 NC_006371.1 ATP-binding protein of abctransporter 845842 3120582 PBPRB0719 Photobacterium profundum SS9 ATP-binding protein of abctransporter YP_132391.1 844322 D 298386 CDS YP_132392.1 54302399 3120587 845835..846833 1 NC_006371.1 permease of ABC transporter 846833 3120587 PBPRB0720 Photobacterium profundum SS9 permease of ABC transporter YP_132392.1 845835 D 298386 CDS YP_132393.1 54302400 3121291 846833..847792 1 NC_006371.1 ABC transporter, permease protein 847792 3121291 PBPRB0721 Photobacterium profundum SS9 ABC transporter, permease protein YP_132393.1 846833 D 298386 CDS YP_132394.1 54302401 3120589 847806..849440 1 NC_006371.1 carbohydrate kinase 849440 3120589 PBPRB0722 Photobacterium profundum SS9 carbohydrate kinase YP_132394.1 847806 D 298386 CDS YP_132395.1 54302402 3120594 complement(849597..851765) 1 NC_006371.1 signal transduction protein 851765 3120594 PBPRB0723 Photobacterium profundum SS9 signal transduction protein YP_132395.1 849597 R 298386 CDS YP_132396.1 54302403 3120601 852049..852990 1 NC_006371.1 transcriptional regulator 852990 3120601 PBPRB0724 Photobacterium profundum SS9 transcriptional regulator YP_132396.1 852049 D 298386 CDS YP_132397.1 54302404 3120605 853145..854023 1 NC_006371.1 hypothetical protein 854023 3120605 PBPRB0725 Photobacterium profundum SS9 hypothetical protein YP_132397.1 853145 D 298386 CDS YP_132398.1 54302405 3120606 complement(854179..855723) 1 NC_006371.1 transposase 855723 3120606 PBPRB0726 Photobacterium profundum SS9 transposase YP_132398.1 854179 R 298386 CDS YP_132399.1 54302406 3120681 complement(855833..856180) 1 NC_006371.1 ISPpu15 transposase 856180 3120681 PBPRB0727 Photobacterium profundum SS9 ISPpu15 transposase YP_132399.1 855833 R 298386 CDS YP_132400.1 54302407 3120610 complement(856180..856476) 1 NC_006371.1 hypothetical protein 856476 3120610 PBPRB0728 Photobacterium profundum SS9 hypothetical protein YP_132400.1 856180 R 298386 CDS YP_132401.1 54302408 3120612 856600..857376 1 NC_006371.1 hypothetical protein 857376 3120612 PBPRB0729 Photobacterium profundum SS9 hypothetical protein YP_132401.1 856600 D 298386 CDS YP_132402.1 54302409 3120615 857658..857930 1 NC_006371.1 hypothetical protein 857930 3120615 PBPRB0730 Photobacterium profundum SS9 hypothetical protein YP_132402.1 857658 D 298386 CDS YP_132403.1 54302410 3120620 857848..858828 1 NC_006371.1 hypothetical protein 858828 3120620 PBPRB0731 Photobacterium profundum SS9 hypothetical protein YP_132403.1 857848 D 298386 CDS YP_132404.1 54302411 3120621 859063..861849 1 NC_006371.1 Zn-dependent peptidase 861849 3120621 PBPRB0732 Photobacterium profundum SS9 Zn-dependent peptidase YP_132404.1 859063 D 298386 CDS YP_132405.1 54302412 3120624 complement(861998..862606) 1 NC_006371.1 hypothetical protein 862606 3120624 PBPRB0733 Photobacterium profundum SS9 hypothetical protein YP_132405.1 861998 R 298386 CDS YP_132406.1 54302413 3120625 complement(862779..863558) 1 NC_006371.1 hypothetical protein 863558 3120625 PBPRB0734 Photobacterium profundum SS9 hypothetical protein YP_132406.1 862779 R 298386 CDS YP_132407.1 54302414 3120880 864072..864632 1 NC_006371.1 hypothetical protein 864632 3120880 PBPRB0735 Photobacterium profundum SS9 hypothetical protein YP_132407.1 864072 D 298386 CDS YP_132408.1 54302415 3120807 864761..865162 1 NC_006371.1 hypothetical protein 865162 3120807 PBPRB0736 Photobacterium profundum SS9 hypothetical protein YP_132408.1 864761 D 298386 CDS YP_132409.1 54302416 3120628 complement(865291..865920) 1 NC_006371.1 hypothetical protein 865920 3120628 PBPRB0737 Photobacterium profundum SS9 hypothetical protein YP_132409.1 865291 R 298386 CDS YP_132410.1 54302417 3120669 complement(866173..866814) 1 NC_006371.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase subunit YedZ 866814 3120669 PBPRB0738 Photobacterium profundum SS9 sulfite oxidase subunit YedZ YP_132410.1 866173 R 298386 CDS YP_132411.1 54302418 3120629 complement(866814..867836) 1 NC_006371.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY 867836 3120629 PBPRB0739 Photobacterium profundum SS9 sulfite oxidase subunit YedY YP_132411.1 866814 R 298386 CDS YP_132412.1 54302419 3120634 868136..868546 1 NC_006371.1 hypothetical protein 868546 3120634 PBPRB0740 Photobacterium profundum SS9 hypothetical protein YP_132412.1 868136 D 298386 CDS YP_132413.1 54302420 3120636 868610..869080 1 NC_006371.1 hypothetical protein 869080 3120636 PBPRB0741 Photobacterium profundum SS9 hypothetical protein YP_132413.1 868610 D 298386 CDS YP_132414.1 54302421 3120638 869354..870493 1 NC_006371.1 delta-9 fatty acid desaturase 870493 3120638 PBPRB0742 Photobacterium profundum SS9 delta-9 fatty acid desaturase YP_132414.1 869354 D 298386 CDS YP_132415.1 54302422 3120641 870765..871670 1 NC_006371.1 hypothetical protein 871670 3120641 PBPRB0743 Photobacterium profundum SS9 hypothetical protein YP_132415.1 870765 D 298386 CDS YP_132416.1 54302423 3120643 complement(871921..872184) 1 NC_006371.1 lipoprotein 872184 3120643 PBPRB0744 Photobacterium profundum SS9 lipoprotein YP_132416.1 871921 R 298386 CDS YP_132417.1 54302424 3120666 complement(872595..873191) 1 NC_006371.1 hypothetical protein 873191 3120666 PBPRB0745 Photobacterium profundum SS9 hypothetical protein YP_132417.1 872595 R 298386 CDS YP_132418.1 54302425 3120649 complement(873188..873682) 1 NC_006371.1 hypothetical protein 873682 3120649 PBPRB0746 Photobacterium profundum SS9 hypothetical protein YP_132418.1 873188 R 298386 CDS YP_132419.1 54302426 3120646 complement(873864..874832) 1 NC_006371.1 hypothetical protein 874832 3120646 PBPRB0747 Photobacterium profundum SS9 hypothetical protein YP_132419.1 873864 R 298386 CDS YP_132420.1 54302427 3120658 complement(875482..876774) 1 NC_006371.1 hypothetical protein 876774 3120658 PBPRB0748 Photobacterium profundum SS9 hypothetical protein YP_132420.1 875482 R 298386 CDS YP_132421.1 54302428 3120661 complement(876780..877454) 1 NC_006371.1 two-component response regulator 877454 3120661 PBPRB0749 Photobacterium profundum SS9 two-component response regulator YP_132421.1 876780 R 298386 CDS YP_132422.1 54302429 3120662 877611..878765 1 NC_006371.1 glycosyl transferase 878765 3120662 PBPRB0750 Photobacterium profundum SS9 glycosyl transferase YP_132422.1 877611 D 298386 CDS YP_132423.1 54302430 3120451 878765..880216 1 NC_006371.1 hypothetical protein 880216 3120451 PBPRB0751 Photobacterium profundum SS9 hypothetical protein YP_132423.1 878765 D 298386 CDS YP_132424.1 54302431 3120664 880450..880701 1 NC_006371.1 hypothetical protein 880701 3120664 PBPRB0752 Photobacterium profundum SS9 hypothetical protein YP_132424.1 880450 D 298386 CDS YP_132425.1 54302432 3120671 880983..881381 1 NC_006371.1 hypothetical protein 881381 3120671 PBPRB0753 Photobacterium profundum SS9 hypothetical protein YP_132425.1 880983 D 298386 CDS YP_132426.1 54302433 3120675 complement(881655..881906) 1 NC_006371.1 hypothetical protein 881906 3120675 PBPRB0754 Photobacterium profundum SS9 hypothetical protein YP_132426.1 881655 R 298386 CDS YP_132427.1 54302434 3120677 882404..882667 1 NC_006371.1 hypothetical protein 882667 3120677 PBPRB0755 Photobacterium profundum SS9 hypothetical protein YP_132427.1 882404 D 298386 CDS YP_132428.1 54302435 3120684 882846..884126 1 NC_006371.1 hypothetical protein 884126 3120684 PBPRB0756 Photobacterium profundum SS9 hypothetical protein YP_132428.1 882846 D 298386 CDS YP_132429.1 54302436 3120686 complement(884899..887034) 1 NC_006371.1 sensor histidine kinase 887034 3120686 PBPRB0757 Photobacterium profundum SS9 sensor histidine kinase YP_132429.1 884899 R 298386 CDS YP_132430.1 54302437 3120688 complement(887161..887949) 1 NC_006371.1 DNA-binding response regulator 887949 3120688 PBPRB0758 Photobacterium profundum SS9 DNA-binding response regulator YP_132430.1 887161 R 298386 CDS YP_132431.1 54302438 3120694 888106..888864 1 NC_006371.1 OmpA family protein 888864 3120694 PBPRB0759 Photobacterium profundum SS9 OmpA family protein YP_132431.1 888106 D 298386 CDS YP_132432.1 54302439 3120697 complement(888978..889319) 1 NC_006371.1 hypothetical protein 889319 3120697 PBPRB0760 Photobacterium profundum SS9 hypothetical protein YP_132432.1 888978 R 298386 CDS YP_132433.1 54302440 3120701 complement(889480..890004) 1 NC_006371.1 chemotaxis protein 890004 3120701 PBPRB0761 Photobacterium profundum SS9 chemotaxis protein YP_132433.1 889480 R 298386 CDS YP_132434.1 54302441 3120704 complement(890054..890443) 1 NC_006371.1 chemotaxis protein 890443 3120704 PBPRB0762 Photobacterium profundum SS9 chemotaxis protein YP_132434.1 890054 R 298386 CDS YP_132435.1 54302442 3120724 890820..895004 1 NC_006371.1 formate dehydrogenase, alphasubunit 895004 3120724 PBPRB0763 Photobacterium profundum SS9 formate dehydrogenase, alphasubunit YP_132435.1 890820 D 298386 CDS YP_132436.1 54302443 3120712 895506..895877 1 NC_006371.1 hypothetical protein 895877 3120712 PBPRB0764 Photobacterium profundum SS9 hypothetical protein YP_132436.1 895506 D 298386 CDS YP_132437.1 54302444 3120719 complement(895960..897156) 1 NC_006371.1 N-acetylglucosamine-6-phosphate deacetylase 897156 3120719 PBPRB0765 Photobacterium profundum SS9 N-acetylglucosamine-6-phosphate deacetylase YP_132437.1 895960 R 298386 CDS YP_132438.1 54302445 3120723 complement(897429..898316) 1 NC_006371.1 LysR family transcriptional regulator 898316 3120723 PBPRB0766 Photobacterium profundum SS9 LysR family transcriptional regulator YP_132438.1 897429 R 298386 CDS YP_132439.1 54302446 3120725 898404..899813 1 NC_006371.1 multidrug transporter 899813 3120725 PBPRB0767 Photobacterium profundum SS9 multidrug transporter YP_132439.1 898404 D 298386 CDS YP_132440.1 54302447 3120727 899992..900777 1 NC_006371.1 hypothetical protein 900777 3120727 PBPRB0768 Photobacterium profundum SS9 hypothetical protein YP_132440.1 899992 D 298386 CDS YP_132441.1 54302448 3120728 complement(900888..901427) 1 NC_006371.1 isochorismatase family protein 901427 3120728 PBPRB0769 Photobacterium profundum SS9 isochorismatase family protein YP_132441.1 900888 R 298386 CDS YP_132442.1 54302449 3120729 901708..902655 1 NC_006371.1 hypothetical protein 902655 3120729 PBPRB0770 Photobacterium profundum SS9 hypothetical protein YP_132442.1 901708 D 298386 CDS YP_132443.1 54302450 3120731 902838..903947 1 NC_006371.1 NAD/NADP octopine/nopalinedehydrogenas 903947 3120731 PBPRB0771 Photobacterium profundum SS9 NAD/NADP octopine/nopalinedehydrogenas YP_132443.1 902838 D 298386 CDS YP_132444.1 54302451 3120734 903975..905417 1 NC_006371.1 hypothetical protein 905417 3120734 PBPRB0772 Photobacterium profundum SS9 hypothetical protein YP_132444.1 903975 D 298386 CDS YP_132445.1 54302452 3120736 complement(905558..906955) 1 NC_006371.1 hypothetical protein 906955 3120736 PBPRB0773 Photobacterium profundum SS9 hypothetical protein YP_132445.1 905558 R 298386 CDS YP_132446.1 54302453 3120737 complement(907078..907728) 1 NC_006371.1 phosphonate ABC transporter ATP-binding protein 907728 3120737 PBPRB0774 Photobacterium profundum SS9 phosphonate ABC transporter ATP-binding protein YP_132446.1 907078 R 298386 CDS YP_132447.1 54302454 3120740 complement(907728..908576) 1 NC_006371.1 phosphate/phosphonate ABC transporter periplasmic protein 908576 3120740 PBPRB0775 Photobacterium profundum SS9 phosphate/phosphonate ABC transporter periplasmic protein YP_132447.1 907728 R 298386 CDS YP_132448.1 54302455 3120741 908734..909279 1 NC_006371.1 adenylate cyclase CyaB 909279 3120741 PBPRB0776 Photobacterium profundum SS9 adenylate cyclase CyaB YP_132448.1 908734 D 298386 CDS YP_132449.1 54302456 3120743 complement(909385..910491) 1 NC_006371.1 M20 family peptidase 910491 3120743 PBPRB0777 Photobacterium profundum SS9 M20 family peptidase YP_132449.1 909385 R 298386 CDS YP_132450.1 54302457 3120746 complement(910634..910966) 1 NC_006371.1 hypothetical protein 910966 3120746 PBPRB0778 Photobacterium profundum SS9 hypothetical protein YP_132450.1 910634 R 298386 CDS YP_132451.1 54302458 3120749 911170..911583 1 NC_006371.1 peptidyl-tRNA hydrolase domain protein 911583 3120749 PBPRB0779 Photobacterium profundum SS9 peptidyl-tRNA hydrolase domain protein YP_132451.1 911170 D 298386 CDS YP_132452.1 54302459 3120751 911788..912117 1 NC_006371.1 hypothetical protein 912117 3120751 PBPRB0780 Photobacterium profundum SS9 hypothetical protein YP_132452.1 911788 D 298386 CDS YP_132453.1 54302460 3120757 912337..913221 1 NC_006371.1 catalyzes the conversion of N-acetyl_L-aspartic acid (NAA) to aspartate and acetate; aspartoacylase 913221 3120757 PBPRB0781 Photobacterium profundum SS9 aspartoacylase YP_132453.1 912337 D 298386 CDS YP_132454.1 54302461 3120759 913549..913983 1 NC_006371.1 glyoxalase/bleomycin resistance protein/dioxygenase family protein 913983 3120759 PBPRB0782 Photobacterium profundum SS9 glyoxalase/bleomycin resistance protein/dioxygenase family protein YP_132454.1 913549 D 298386 CDS YP_132455.1 54302462 3120761 913977..914864 1 NC_006371.1 hypothetical protein 914864 3120761 PBPRB0783 Photobacterium profundum SS9 hypothetical protein YP_132455.1 913977 D 298386 CDS YP_132456.1 54302463 3120762 complement(914902..915219) 1 NC_006371.1 aromatic ring-cleaving dioxygenase 915219 3120762 PBPRB0784 Photobacterium profundum SS9 aromatic ring-cleaving dioxygenase YP_132456.1 914902 R 298386 CDS YP_132457.1 54302464 3120764 915372..916700 1 NC_006371.1 hypothetical protein 916700 3120764 PBPRB0785 Photobacterium profundum SS9 hypothetical protein YP_132457.1 915372 D 298386 CDS YP_132458.1 54302465 3120767 complement(917007..917675) 1 NC_006371.1 hypothetical protein 917675 3120767 PBPRB0786 Photobacterium profundum SS9 hypothetical protein YP_132458.1 917007 R 298386 CDS YP_132459.1 54302466 3120768 complement(918258..918770) 1 NC_006371.1 hypothetical protein 918770 3120768 PBPRB0787 Photobacterium profundum SS9 hypothetical protein YP_132459.1 918258 R 298386 CDS YP_132460.1 54302467 3120769 complement(918865..919617) 1 NC_006371.1 nitroreductase 919617 3120769 PBPRB0788 Photobacterium profundum SS9 nitroreductase YP_132460.1 918865 R 298386 CDS YP_132461.1 54302468 3120770 919869..920552 1 NC_006371.1 hypothetical protein 920552 3120770 PBPRB0789 Photobacterium profundum SS9 hypothetical protein YP_132461.1 919869 D 298386 CDS YP_132462.1 54302469 3120777 921013..922713 1 NC_006371.1 ABC transporter periplasmic solute-binding protein 922713 3120777 PBPRB0790 Photobacterium profundum SS9 ABC transporter periplasmic solute-binding protein YP_132462.1 921013 D 298386 CDS YP_132463.1 54302470 3120783 complement(922850..924034) 1 NC_006371.1 D-alanyl-D-alanine carboxypeptidase 924034 3120783 PBPRB0791 Photobacterium profundum SS9 D-alanyl-D-alanine carboxypeptidase YP_132463.1 922850 R 298386 CDS YP_132464.1 54302471 3120784 complement(924124..924582) 1 NC_006371.1 hypothetical protein 924582 3120784 PBPRB0792 Photobacterium profundum SS9 hypothetical protein YP_132464.1 924124 R 298386 CDS YP_132465.1 54302472 3120786 924756..926261 1 NC_006371.1 Na+/H+ antiporter 926261 3120786 PBPRB0793 Photobacterium profundum SS9 Na+/H+ antiporter YP_132465.1 924756 D 298386 CDS YP_132466.1 54302473 3120787 926381..927142 1 NC_006371.1 hypothetical protein 927142 3120787 PBPRB0794 Photobacterium profundum SS9 hypothetical protein YP_132466.1 926381 D 298386 CDS YP_132467.1 54302474 3120788 complement(927198..928205) 1 NC_006371.1 threonine aldolase 928205 3120788 PBPRB0795 Photobacterium profundum SS9 threonine aldolase YP_132467.1 927198 R 298386 CDS YP_132468.1 54302475 3120789 928690..928992 1 NC_006371.1 hypothetical protein 928992 3120789 PBPRB0796 Photobacterium profundum SS9 hypothetical protein YP_132468.1 928690 D 298386 CDS YP_132469.1 54302476 3120790 complement(929232..929582) 1 NC_006371.1 hypothetical protein 929582 3120790 PBPRB0797 Photobacterium profundum SS9 hypothetical protein YP_132469.1 929232 R 298386 CDS YP_132470.1 54302477 3120791 929824..930198 1 NC_006371.1 hypothetical protein 930198 3120791 PBPRB0798 Photobacterium profundum SS9 hypothetical protein YP_132470.1 929824 D 298386 CDS YP_132471.1 54302478 3120796 930315..931082 1 NC_006371.1 hypothetical protein 931082 3120796 PBPRB0799 Photobacterium profundum SS9 hypothetical protein YP_132471.1 930315 D 298386 CDS YP_132472.1 54302479 3120798 931436..932275 1 NC_006371.1 oxidoreductase 932275 3120798 PBPRB0800 Photobacterium profundum SS9 oxidoreductase YP_132472.1 931436 D 298386 CDS YP_132473.1 54302480 3120799 complement(932372..932995) 1 NC_006371.1 cytosine deaminase 932995 3120799 PBPRB0801 Photobacterium profundum SS9 cytosine deaminase YP_132473.1 932372 R 298386 CDS YP_132474.1 54302481 3120802 complement(932974..933777) 1 NC_006371.1 cytosine deaminase 933777 3120802 PBPRB0802 Photobacterium profundum SS9 cytosine deaminase YP_132474.1 932974 R 298386 CDS YP_132475.1 54302482 3120804 complement(933983..935320) 1 NC_006371.1 MATE efflux family protein 935320 3120804 PBPRB0803 Photobacterium profundum SS9 MATE efflux family protein YP_132475.1 933983 R 298386 CDS YP_132476.1 54302483 3120810 935816..936514 1 NC_006371.1 hypothetical protein 936514 3120810 PBPRB0804 Photobacterium profundum SS9 hypothetical protein YP_132476.1 935816 D 298386 CDS YP_132477.1 54302484 3120815 complement(936521..936778) 1 NC_006371.1 hypothetical protein 936778 3120815 PBPRB0805 Photobacterium profundum SS9 hypothetical protein YP_132477.1 936521 R 298386 CDS YP_132478.1 54302485 3120820 complement(936961..937224) 1 NC_006371.1 hypothetical protein 937224 3120820 PBPRB0806 Photobacterium profundum SS9 hypothetical protein YP_132478.1 936961 R 298386 CDS YP_132479.1 54302486 3120821 937334..938599 1 NC_006371.1 maturase 938599 3120821 PBPRB0807 Photobacterium profundum SS9 maturase YP_132479.1 937334 D 298386 CDS YP_132480.1 54302487 3120824 complement(938719..939396) 1 NC_006371.1 acyl dehydratase 939396 3120824 PBPRB0808 Photobacterium profundum SS9 acyl dehydratase YP_132480.1 938719 R 298386 CDS YP_132481.1 54302488 3120825 940234..941505 1 NC_006371.1 beta-lactamase-like protein 941505 3120825 PBPRB0809 Photobacterium profundum SS9 beta-lactamase-like protein YP_132481.1 940234 D 298386 CDS YP_132482.1 54302489 3120826 941590..941871 1 NC_006371.1 hypothetical protein 941871 3120826 PBPRB0810 Photobacterium profundum SS9 hypothetical protein YP_132482.1 941590 D 298386 CDS YP_132483.1 54302490 3120827 942078..942374 1 NC_006371.1 hypothetical protein 942374 3120827 PBPRB0811 Photobacterium profundum SS9 hypothetical protein YP_132483.1 942078 D 298386 CDS YP_132484.1 54302491 3120834 942445..942822 1 NC_006371.1 hypothetical protein 942822 3120834 PBPRB0812 Photobacterium profundum SS9 hypothetical protein YP_132484.1 942445 D 298386 CDS YP_132485.1 54302492 3120836 complement(943265..943810) 1 NC_006371.1 hypothetical protein 943810 3120836 PBPRB0813 Photobacterium profundum SS9 hypothetical protein YP_132485.1 943265 R 298386 CDS YP_132486.1 54302493 3120840 944017..945297 1 NC_006371.1 hypothetical protein 945297 3120840 PBPRB0814 Photobacterium profundum SS9 hypothetical protein YP_132486.1 944017 D 298386 CDS YP_132487.1 54302494 3120841 946823..948094 1 NC_006371.1 Tn5 trasposase 948094 3120841 PBPRB0815 Photobacterium profundum SS9 Tn5 trasposase YP_132487.1 946823 D 298386 CDS YP_132488.1 54302495 3120843 948366..950012 1 NC_006371.1 ATPase of the ABC class 950012 3120843 PBPRB0816 Photobacterium profundum SS9 ATPase of the ABC class YP_132488.1 948366 D 298386 CDS YP_132489.1 54302496 3120848 950189..951025 1 NC_006371.1 hypothetical protein 951025 3120848 PBPRB0817 Photobacterium profundum SS9 hypothetical protein YP_132489.1 950189 D 298386 CDS YP_132490.1 54302497 3120849 951167..951454 1 NC_006371.1 hypothetical protein 951454 3120849 PBPRB0818 Photobacterium profundum SS9 hypothetical protein YP_132490.1 951167 D 298386 CDS YP_132491.1 54302498 3120850 951506..951892 1 NC_006371.1 hypothetical protein 951892 3120850 PBPRB0819 Photobacterium profundum SS9 hypothetical protein YP_132491.1 951506 D 298386 CDS YP_132492.1 54302499 3120851 complement(951923..952186) 1 NC_006371.1 hypothetical protein 952186 3120851 PBPRB0820 Photobacterium profundum SS9 hypothetical protein YP_132492.1 951923 R 298386 CDS YP_132493.1 54302500 3120855 complement(952170..953366) 1 NC_006371.1 hypothetical protein 953366 3120855 PBPRB0821 Photobacterium profundum SS9 hypothetical protein YP_132493.1 952170 R 298386 CDS YP_132494.1 54302501 3120856 complement(953577..953825) 1 NC_006371.1 hypothetical protein 953825 3120856 PBPRB0822 Photobacterium profundum SS9 hypothetical protein YP_132494.1 953577 R 298386 CDS YP_132495.1 54302502 3120738 953916..954407 1 NC_006371.1 hypothetical protein 954407 3120738 PBPRB0823 Photobacterium profundum SS9 hypothetical protein YP_132495.1 953916 D 298386 CDS YP_132496.1 54302503 3120857 954437..954937 1 NC_006371.1 thioredoxin 954937 3120857 PBPRB0824 Photobacterium profundum SS9 thioredoxin YP_132496.1 954437 D 298386 CDS YP_132497.1 54302504 3120860 955138..956052 1 NC_006371.1 hypothetical protein 956052 3120860 PBPRB0825 Photobacterium profundum SS9 hypothetical protein YP_132497.1 955138 D 298386 CDS YP_132498.1 54302505 3120862 956079..957269 1 NC_006371.1 hypothetical protein 957269 3120862 PBPRB0826 Photobacterium profundum SS9 hypothetical protein YP_132498.1 956079 D 298386 CDS YP_132499.1 54302506 3120864 958316..959926 1 NC_006371.1 hypothetical protein 959926 3120864 PBPRB0827 Photobacterium profundum SS9 hypothetical protein YP_132499.1 958316 D 298386 CDS YP_132500.1 54302507 3120865 complement(960075..961079) 1 NC_006371.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 961079 3120865 PBPRB0828 Photobacterium profundum SS9 beta-hexosaminidase YP_132500.1 960075 R 298386 CDS YP_132501.1 54302508 3120866 961471..961956 1 NC_006371.1 hypothetical protein 961956 3120866 PBPRB0829 Photobacterium profundum SS9 hypothetical protein YP_132501.1 961471 D 298386 CDS YP_132502.1 54302509 3120869 complement(962138..962491) 1 NC_006371.1 hypothetical protein 962491 3120869 PBPRB0830 Photobacterium profundum SS9 hypothetical protein YP_132502.1 962138 R 298386 CDS YP_132503.1 54302510 3120873 963241..964278 1 NC_006371.1 IS630 family transposase 964278 3120873 PBPRB0831 Photobacterium profundum SS9 IS630 family transposase YP_132503.1 963241 D 298386 CDS YP_132504.1 54302511 3120875 964303..965340 1 NC_006371.1 transposase 965340 3120875 PBPRB0832 Photobacterium profundum SS9 transposase YP_132504.1 964303 D 298386 CDS YP_132505.1 54302512 3120879 complement(965888..966406) 1 NC_006371.1 hypothetical protein 966406 3120879 PBPRB0833 Photobacterium profundum SS9 hypothetical protein YP_132505.1 965888 R 298386 CDS YP_132506.1 54302513 3120883 966910..967257 1 NC_006371.1 transposase 967257 3120883 PBPRB0834 Photobacterium profundum SS9 transposase YP_132506.1 966910 D 298386 CDS YP_132507.1 54302514 3120885 967367..968911 1 NC_006371.1 hypothetical protein 968911 3120885 PBPRB0835 Photobacterium profundum SS9 hypothetical protein YP_132507.1 967367 D 298386 CDS YP_132508.1 54302515 3120888 complement(968930..969268) 1 NC_006371.1 transposase 969268 3120888 PBPRB0836 Photobacterium profundum SS9 transposase YP_132508.1 968930 R 298386 CDS YP_132509.1 54302516 3120893 complement(969243..969785) 1 NC_006371.1 transposase 969785 3120893 PBPRB0837 Photobacterium profundum SS9 transposase YP_132509.1 969243 R 298386 CDS YP_132510.1 54302517 3120894 complement(969795..971405) 1 NC_006371.1 hypothetical protein 971405 3120894 PBPRB0838 Photobacterium profundum SS9 hypothetical protein YP_132510.1 969795 R 298386 CDS YP_132511.1 54302518 3120895 971540..972628 1 NC_006371.1 transposase 972628 3120895 PBPRB0839 Photobacterium profundum SS9 transposase YP_132511.1 971540 D 298386 CDS YP_132512.1 54302519 3120896 972715..973176 1 NC_006371.1 hypothetical protein 973176 3120896 PBPRB0840 Photobacterium profundum SS9 hypothetical protein YP_132512.1 972715 D 298386 CDS YP_132513.1 54302520 3120897 complement(973130..974167) 1 NC_006371.1 transposase 974167 3120897 PBPRB0841 Photobacterium profundum SS9 transposase YP_132513.1 973130 R 298386 CDS YP_132514.1 54302521 3120904 974469..974711 1 NC_006371.1 hypothetical protein 974711 3120904 PBPRB0842 Photobacterium profundum SS9 hypothetical protein YP_132514.1 974469 D 298386 CDS YP_132515.1 54302522 3121122 complement(974828..976165) 1 NC_006371.1 sensor histidine kinase 976165 3121122 PBPRB0843 Photobacterium profundum SS9 sensor histidine kinase YP_132515.1 974828 R 298386 CDS YP_132516.1 54302523 3120908 complement(976217..976816) 1 NC_006371.1 DNA-binding response regulator 976816 3120908 PBPRB0844 Photobacterium profundum SS9 DNA-binding response regulator YP_132516.1 976217 R 298386 CDS YP_132517.1 54302524 3120909 complement(976813..977163) 1 NC_006371.1 hypothetical protein 977163 3120909 PBPRB0845 Photobacterium profundum SS9 hypothetical protein YP_132517.1 976813 R 298386 CDS YP_132518.1 54302525 3120916 977458..979593 1 NC_006371.1 NosR, regulator of nitric oxide reductase transcription 979593 3120916 PBPRB0846 Photobacterium profundum SS9 NosR, regulator of nitric oxide reductase transcription YP_132518.1 977458 D 298386 CDS YP_132519.1 54302526 3120917 979715..981619 1 NC_006371.1 reduces nitrous oxide to nitrogen; nitrous-oxide reductase 981619 3120917 PBPRB0847 Photobacterium profundum SS9 nitrous-oxide reductase YP_132519.1 979715 D 298386 CDS YP_132520.1 54302527 3120918 981804..983123 1 NC_006371.1 NosD, nitrous oxidase accessory protein 983123 3120918 PBPRB0848 Photobacterium profundum SS9 NosD, nitrous oxidase accessory protein YP_132520.1 981804 D 298386 CDS YP_132521.1 54302528 3120919 983077..984126 1 NC_006371.1 ABC transporter 984126 3120919 PBPRB0849 Photobacterium profundum SS9 ABC transporter YP_132521.1 983077 D 298386 CDS YP_132522.1 54302529 3120819 984123..984941 1 NC_006371.1 nitrous oxide metabolic protein 984941 3120819 PBPRB0850 Photobacterium profundum SS9 nitrous oxide metabolic protein YP_132522.1 984123 D 298386 CDS YP_132523.1 54302530 3120921 985018..985518 1 NC_006371.1 protein disulfide isomerase 985518 3120921 PBPRB0851 Photobacterium profundum SS9 protein disulfide isomerase YP_132523.1 985018 D 298386 CDS YP_132524.1 54302531 3120922 985620..985988 1 NC_006371.1 peptidyl-prolyl cis-trans isomerase C 985988 3120922 PBPRB0852 Photobacterium profundum SS9 peptidyl-prolyl cis-trans isomerase C YP_132524.1 985620 D 298386 CDS YP_132525.1 54302532 3120924 complement(986067..986309) 1 NC_006371.1 hypothetical protein 986309 3120924 PBPRB0853 Photobacterium profundum SS9 hypothetical protein YP_132525.1 986067 R 298386 CDS YP_132526.1 54302533 3120925 986580..987470 1 NC_006371.1 transcriptional regulator 987470 3120925 PBPRB0854 Photobacterium profundum SS9 transcriptional regulator YP_132526.1 986580 D 298386 CDS YP_132527.1 54302534 3120926 complement(987473..987751) 1 NC_006371.1 hypothetical protein 987751 3120926 PBPRB0855 Photobacterium profundum SS9 hypothetical protein YP_132527.1 987473 R 298386 CDS YP_132528.1 54302535 3120928 complement(987857..988348) 1 NC_006371.1 hypothetical protein 988348 3120928 PBPRB0856 Photobacterium profundum SS9 hypothetical protein YP_132528.1 987857 R 298386 CDS YP_132529.1 54302536 3120931 complement(988369..989670) 1 NC_006371.1 hypothetical protein 989670 3120931 PBPRB0857 Photobacterium profundum SS9 hypothetical protein YP_132529.1 988369 R 298386 CDS YP_132530.1 54302537 3120934 complement(989943..990482) 1 NC_006371.1 hypothetical protein 990482 3120934 PBPRB0858 Photobacterium profundum SS9 hypothetical protein YP_132530.1 989943 R 298386 CDS YP_132531.1 54302538 3120935 complement(990632..991369) 1 NC_006371.1 amidotransferase 991369 3120935 PBPRB0859 Photobacterium profundum SS9 amidotransferase YP_132531.1 990632 R 298386 CDS YP_132532.1 54302539 3120939 complement(991434..992591) 1 NC_006371.1 methanol dehydrogenase 992591 3120939 PBPRB0860 Photobacterium profundum SS9 methanol dehydrogenase YP_132532.1 991434 R 298386 CDS YP_132533.1 54302540 3120940 complement(992646..994055) 1 NC_006371.1 aldehyde dehydrogenase 994055 3120940 PBPRB0861 Photobacterium profundum SS9 aldehyde dehydrogenase YP_132533.1 992646 R 298386 CDS YP_132534.1 54302541 3120903 complement(994113..995480) 1 NC_006371.1 hypothetical protein 995480 3120903 PBPRB0862 Photobacterium profundum SS9 hypothetical protein YP_132534.1 994113 R 298386 CDS YP_132535.1 54302542 3120941 995801..996619 1 NC_006371.1 hypothetical protein 996619 3120941 PBPRB0863 Photobacterium profundum SS9 hypothetical protein YP_132535.1 995801 D 298386 CDS YP_132536.1 54302543 3120739 996653..997651 1 NC_006371.1 hypothetical protein 997651 3120739 PBPRB0864 Photobacterium profundum SS9 hypothetical protein YP_132536.1 996653 D 298386 CDS YP_132537.1 54302544 3120944 997777..998481 1 NC_006371.1 hypothetical protein 998481 3120944 PBPRB0865 Photobacterium profundum SS9 hypothetical protein YP_132537.1 997777 D 298386 CDS YP_132538.1 54302545 3121045 998701..1000563 1 NC_006371.1 hypothetical protein 1000563 3121045 PBPRB0866 Photobacterium profundum SS9 hypothetical protein YP_132538.1 998701 D 298386 CDS YP_132539.1 54302546 3120945 complement(1000572..1000925) 1 NC_006371.1 hypothetical protein 1000925 3120945 PBPRB0867 Photobacterium profundum SS9 hypothetical protein YP_132539.1 1000572 R 298386 CDS YP_132540.1 54302547 3120946 complement(1001024..1002220) 1 NC_006371.1 hypothetical protein 1002220 3120946 PBPRB0868 Photobacterium profundum SS9 hypothetical protein YP_132540.1 1001024 R 298386 CDS YP_132541.1 54302548 3120951 complement(1002560..1002982) 1 NC_006371.1 hypothetical protein 1002982 3120951 PBPRB0869 Photobacterium profundum SS9 hypothetical protein YP_132541.1 1002560 R 298386 CDS YP_132542.1 54302549 3120952 complement(1003080..1004015) 1 NC_006371.1 siroheme synthase component enzyme 1004015 3120952 PBPRB0870 Photobacterium profundum SS9 siroheme synthase component enzyme YP_132542.1 1003080 R 298386 CDS YP_132543.1 54302550 3120953 1004188..1004919 1 NC_006371.1 hypothetical protein 1004919 3120953 PBPRB0871 Photobacterium profundum SS9 hypothetical protein YP_132543.1 1004188 D 298386 CDS YP_132544.1 54302551 3120956 1004916..1005968 1 NC_006371.1 transposase 1005968 3120956 PBPRB0872 Photobacterium profundum SS9 transposase YP_132544.1 1004916 D 298386 CDS YP_132545.1 54302552 3120958 1006424..1007548 1 NC_006371.1 multidrug efflux membrane fusion protein 1007548 3120958 PBPRB0873 Photobacterium profundum SS9 multidrug efflux membrane fusion protein YP_132545.1 1006424 D 298386 CDS YP_132546.1 54302553 3120962 1007548..1010703 1 NC_006371.1 acriflavin resistence protein 1010703 3120962 PBPRB0874 Photobacterium profundum SS9 acriflavin resistence protein YP_132546.1 1007548 D 298386 CDS YP_132547.1 54302554 3120964 complement(1010879..1011862) 1 NC_006371.1 hypothetical protein 1011862 3120964 PBPRB0875 Photobacterium profundum SS9 hypothetical protein YP_132547.1 1010879 R 298386 CDS YP_132548.1 54302555 3120965 1012228..1013052 1 NC_006371.1 hypothetical protein 1013052 3120965 PBPRB0876 Photobacterium profundum SS9 hypothetical protein YP_132548.1 1012228 D 298386 CDS YP_132549.1 54302556 3120966 1013094..1013744 1 NC_006371.1 hypothetical protein 1013744 3120966 PBPRB0877 Photobacterium profundum SS9 hypothetical protein YP_132549.1 1013094 D 298386 CDS YP_132550.1 54302557 3120971 complement(1013830..1014819) 1 NC_006371.1 hypothetical protein 1014819 3120971 PBPRB0878 Photobacterium profundum SS9 hypothetical protein YP_132550.1 1013830 R 298386 CDS YP_132551.1 54302558 3120973 complement(1015210..1015707) 1 NC_006371.1 acetyltransferase 1015707 3120973 PBPRB0879 Photobacterium profundum SS9 acetyltransferase YP_132551.1 1015210 R 298386 CDS YP_132552.1 54302559 3120975 complement(1015707..1016054) 1 NC_006371.1 hypothetical protein 1016054 3120975 PBPRB0880 Photobacterium profundum SS9 hypothetical protein YP_132552.1 1015707 R 298386 CDS YP_132553.1 54302560 3120976 1016378..1017943 1 NC_006371.1 hypothetical protein 1017943 3120976 PBPRB0881 Photobacterium profundum SS9 hypothetical protein YP_132553.1 1016378 D 298386 CDS YP_132554.1 54302561 3120977 1018017..1018862 1 NC_006371.1 rhodanese-like sulfurtransferase 1018862 3120977 PBPRB0882 Photobacterium profundum SS9 rhodanese-like sulfurtransferase YP_132554.1 1018017 D 298386 CDS YP_132555.1 54302562 3120979 complement(1019226..1020083) 1 NC_006371.1 ABC transporter periplasmic substrate-binding protein 1020083 3120979 PBPRB0883 Photobacterium profundum SS9 ABC transporter periplasmic substrate-binding protein YP_132555.1 1019226 R 298386 CDS YP_132556.1 54302563 3120985 complement(1020184..1020771) 1 NC_006371.1 hypothetical protein 1020771 3120985 PBPRB0884 Photobacterium profundum SS9 hypothetical protein YP_132556.1 1020184 R 298386 CDS YP_132557.1 54302564 3120989 1020971..1022251 1 NC_006371.1 hypothetical protein 1022251 3120989 PBPRB0885 Photobacterium profundum SS9 hypothetical protein YP_132557.1 1020971 D 298386 CDS YP_132558.1 54302565 3120991 1022951..1024516 1 NC_006371.1 hypothetical protein 1024516 3120991 PBPRB0886 Photobacterium profundum SS9 hypothetical protein YP_132558.1 1022951 D 298386 CDS YP_132559.1 54302566 3120995 1025054..1025395 1 NC_006371.1 hypothetical protein 1025395 3120995 PBPRB0887 Photobacterium profundum SS9 hypothetical protein YP_132559.1 1025054 D 298386 CDS YP_132560.1 54302567 3120997 1025633..1026223 1 NC_006371.1 hypothetical protein 1026223 3120997 PBPRB0888 Photobacterium profundum SS9 hypothetical protein YP_132560.1 1025633 D 298386 CDS YP_132561.1 54302568 3120998 complement(1026914..1028032) 1 NC_006371.1 hypothetical protein 1028032 3120998 PBPRB0889 Photobacterium profundum SS9 hypothetical protein YP_132561.1 1026914 R 298386 CDS YP_132562.1 54302569 3121006 1028295..1029764 1 NC_006371.1 hypothetical protein 1029764 3121006 PBPRB0890 Photobacterium profundum SS9 hypothetical protein YP_132562.1 1028295 D 298386 CDS YP_132563.1 54302570 3121010 1029814..1030581 1 NC_006371.1 stomatin-like protein 1030581 3121010 PBPRB0891 Photobacterium profundum SS9 stomatin-like protein YP_132563.1 1029814 D 298386 CDS YP_132564.1 54302571 3121017 1030782..1031798 1 NC_006371.1 SAM-dependent methyltransferase 1031798 3121017 PBPRB0892 Photobacterium profundum SS9 SAM-dependent methyltransferase YP_132564.1 1030782 D 298386 CDS YP_132565.1 54302572 3121024 1031971..1032543 1 NC_006371.1 hypothetical protein 1032543 3121024 PBPRB0893 Photobacterium profundum SS9 hypothetical protein YP_132565.1 1031971 D 298386 CDS YP_132566.1 54302573 3121026 complement(1032613..1034259) 1 NC_006371.1 ATP-dependent endonuclease 1034259 3121026 PBPRB0894 Photobacterium profundum SS9 ATP-dependent endonuclease YP_132566.1 1032613 R 298386 CDS YP_132567.1 54302574 3121031 1034438..1034833 1 NC_006371.1 hypothetical protein 1034833 3121031 PBPRB0895 Photobacterium profundum SS9 hypothetical protein YP_132567.1 1034438 D 298386 CDS YP_132568.1 54302575 3121038 complement(1035002..1035859) 1 NC_006371.1 hypothetical protein 1035859 3121038 PBPRB0896 Photobacterium profundum SS9 hypothetical protein YP_132568.1 1035002 R 298386 CDS YP_132569.1 54302576 3120809 1036233..1037993 1 NC_006371.1 5`-nucleotidase 1037993 3120809 PBPRB0897 Photobacterium profundum SS9 5`-nucleotidase YP_132569.1 1036233 D 298386 CDS YP_132570.1 54302577 3121042 complement(1038628..1039314) 1 NC_006371.1 3,4-dihydroxy-2-butanone 4-phosphate synthase 1039314 3121042 PBPRB0898 Photobacterium profundum SS9 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_132570.1 1038628 R 298386 CDS YP_132571.1 54302578 3121044 complement(1039742..1040683) 1 NC_006371.1 hypothetical protein 1040683 3121044 PBPRB0899 Photobacterium profundum SS9 hypothetical protein YP_132571.1 1039742 R 298386 CDS YP_132572.1 54302579 3121046 1040963..1041154 1 NC_006371.1 hypothetical protein 1041154 3121046 PBPRB0900 Photobacterium profundum SS9 hypothetical protein YP_132572.1 1040963 D 298386 CDS YP_132573.1 54302580 3121053 1041418..1041681 1 NC_006371.1 hypothetical protein 1041681 3121053 PBPRB0901 Photobacterium profundum SS9 hypothetical protein YP_132573.1 1041418 D 298386 CDS YP_132574.1 54302581 3121054 1042127..1043683 1 NC_006371.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 1043683 pntA 3121054 pntA Photobacterium profundum SS9 NAD(P) transhydrogenase subunit alpha YP_132574.1 1042127 D 298386 CDS YP_132575.1 54302582 3121055 1043694..1045070 1 NC_006371.1 catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 1045070 pntB 3121055 pntB Photobacterium profundum SS9 pyridine nucleotide transhydrogenase YP_132575.1 1043694 D 298386 CDS YP_132576.1 54302583 3121056 1045218..1046663 1 NC_006371.1 sensor histidine kinase 1046663 3121056 PBPRB0904 Photobacterium profundum SS9 sensor histidine kinase YP_132576.1 1045218 D 298386 CDS YP_132577.1 54302584 3121057 1046599..1047297 1 NC_006371.1 transcriptional regulator 1047297 3121057 PBPRB0905 Photobacterium profundum SS9 transcriptional regulator YP_132577.1 1046599 D 298386 CDS YP_132578.1 54302585 3121060 1047327..1048196 1 NC_006371.1 hypothetical protein 1048196 3121060 PBPRB0906 Photobacterium profundum SS9 hypothetical protein YP_132578.1 1047327 D 298386 CDS YP_132579.1 54302586 3121062 1048366..1049571 1 NC_006371.1 hypothetical protein 1049571 3121062 PBPRB0907 Photobacterium profundum SS9 hypothetical protein YP_132579.1 1048366 D 298386 CDS YP_132580.1 54302587 3121068 complement(1049603..1049932) 1 NC_006371.1 hypothetical protein 1049932 3121068 PBPRB0908 Photobacterium profundum SS9 hypothetical protein YP_132580.1 1049603 R 298386 CDS YP_132581.1 54302588 3121072 1050025..1050534 1 NC_006371.1 hypothetical protein 1050534 3121072 PBPRB0909 Photobacterium profundum SS9 hypothetical protein YP_132581.1 1050025 D 298386 CDS YP_132582.1 54302589 3121075 1050745..1052130 1 NC_006371.1 transposase 1052130 3121075 PBPRB0910 Photobacterium profundum SS9 transposase YP_132582.1 1050745 D 298386 CDS YP_132583.1 54302590 3121076 complement(1052205..1053041) 1 NC_006371.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1053041 nadE 3121076 nadE Photobacterium profundum SS9 NAD synthetase YP_132583.1 1052205 R 298386 CDS YP_132584.1 54302591 3121080 1053255..1053779 1 NC_006371.1 catalyzes the formation of deamido-NAD(+) from nicotinate ribonucleotide and ATP; nicotinic acid mononucleotide adenylyltransferase 1053779 3121080 PBPRB0912 Photobacterium profundum SS9 nicotinic acid mononucleotide adenylyltransferase YP_132584.1 1053255 D 298386 CDS YP_132585.1 54302592 3121081 1053804..1054340 1 NC_006371.1 hypothetical protein 1054340 3121081 PBPRB0913 Photobacterium profundum SS9 hypothetical protein YP_132585.1 1053804 D 298386 CDS YP_132586.1 54302593 3121084 complement(1054381..1055058) 1 NC_006371.1 hypothetical protein 1055058 3121084 PBPRB0914 Photobacterium profundum SS9 hypothetical protein YP_132586.1 1054381 R 298386 CDS YP_132587.1 54302594 3121088 1055331..1056443 1 NC_006371.1 hypothetical protein 1056443 3121088 PBPRB0915 Photobacterium profundum SS9 hypothetical protein YP_132587.1 1055331 D 298386 CDS YP_132588.1 54302595 3121089 complement(1056553..1057179) 1 NC_006371.1 hypothetical protein 1057179 3121089 PBPRB0916 Photobacterium profundum SS9 hypothetical protein YP_132588.1 1056553 R 298386 CDS YP_132589.1 54302596 3121092 complement(1057416..1058612) 1 NC_006371.1 hypothetical protein 1058612 3121092 PBPRB0917 Photobacterium profundum SS9 hypothetical protein YP_132589.1 1057416 R 298386 CDS YP_132590.1 54302597 3121097 1058846..1059415 1 NC_006371.1 manganese transporter 1059415 3121097 PBPRB0918 Photobacterium profundum SS9 manganese transporter YP_132590.1 1058846 D 298386 CDS YP_132591.1 54302598 3121099 complement(1059828..1060142) 1 NC_006371.1 hypothetical protein 1060142 3121099 PBPRB0919 Photobacterium profundum SS9 hypothetical protein YP_132591.1 1059828 R 298386 CDS YP_132592.1 54302599 3121100 complement(1060390..1061229) 1 NC_006371.1 hypothetical protein 1061229 3121100 PBPRB0920 Photobacterium profundum SS9 hypothetical protein YP_132592.1 1060390 R 298386 CDS YP_132593.1 54302600 3121101 1061492..1062385 1 NC_006371.1 transcriptional regulator 1062385 3121101 PBPRB0921 Photobacterium profundum SS9 transcriptional regulator YP_132593.1 1061492 D 298386 CDS YP_132594.1 54302601 3121102 complement(1062533..1065262) 1 NC_006371.1 acetyltransferase 1065262 3121102 PBPRB0922 Photobacterium profundum SS9 acetyltransferase YP_132594.1 1062533 R 298386 CDS YP_132595.1 54302602 3121103 complement(1065768..1066331) 1 NC_006371.1 transposase 1066331 3121103 PBPRB0923 Photobacterium profundum SS9 transposase YP_132595.1 1065768 R 298386 CDS YP_132596.1 54302603 3121111 complement(1066333..1066803) 1 NC_006371.1 transposase 1066803 3121111 PBPRB0924 Photobacterium profundum SS9 transposase YP_132596.1 1066333 R 298386 CDS YP_132597.1 54302604 3121113 1067237..1067776 1 NC_006371.1 hypothetical protein 1067776 3121113 PBPRB0925 Photobacterium profundum SS9 hypothetical protein YP_132597.1 1067237 D 298386 CDS YP_132598.1 54302605 3121114 1067863..1068426 1 NC_006371.1 acetyltransferase 1068426 3121114 PBPRB0926 Photobacterium profundum SS9 acetyltransferase YP_132598.1 1067863 D 298386 CDS YP_132599.1 54302606 3121115 1068648..1069640 1 NC_006371.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 1069640 ddl 3121115 ddl Photobacterium profundum SS9 D-alanyl-alanine synthetase A YP_132599.1 1068648 D 298386 CDS YP_132600.1 54302607 3121116 1070087..1070722 1 NC_006371.1 cell filamentation protein 1070722 3121116 PBPRB0928 Photobacterium profundum SS9 cell filamentation protein YP_132600.1 1070087 D 298386 CDS YP_132601.1 54302608 3121118 complement(1070762..1071742) 1 NC_006371.1 hypothetical protein 1071742 3121118 PBPRB0929 Photobacterium profundum SS9 hypothetical protein YP_132601.1 1070762 R 298386 CDS YP_132602.1 54302609 3121120 1071914..1072348 1 NC_006371.1 hypothetical protein 1072348 3121120 PBPRB0930 Photobacterium profundum SS9 hypothetical protein YP_132602.1 1071914 D 298386 CDS YP_132603.1 54302610 3121126 complement(1072469..1072981) 1 NC_006371.1 hypothetical protein 1072981 3121126 PBPRB0931 Photobacterium profundum SS9 hypothetical protein YP_132603.1 1072469 R 298386 CDS YP_132604.1 54302611 3121127 complement(1073093..1073698) 1 NC_006371.1 hypothetical protein 1073698 3121127 PBPRB0932 Photobacterium profundum SS9 hypothetical protein YP_132604.1 1073093 R 298386 CDS YP_132605.1 54302612 3121130 1073803..1074141 1 NC_006371.1 involved in start site selection during the initiation of translation; translation initiation factor Sui1 1074141 3121130 PBPRB0933 Photobacterium profundum SS9 translation initiation factor Sui1 YP_132605.1 1073803 D 298386 CDS YP_132606.1 54302613 3121141 1074738..1075187 1 NC_006371.1 hypothetical protein 1075187 3121141 PBPRB0934 Photobacterium profundum SS9 hypothetical protein YP_132606.1 1074738 D 298386 CDS YP_132607.1 54302614 3121142 1075339..1076031 1 NC_006371.1 hypothetical protein 1076031 3121142 PBPRB0935 Photobacterium profundum SS9 hypothetical protein YP_132607.1 1075339 D 298386 CDS YP_132608.1 54302615 3121144 complement(1076062..1077018) 1 NC_006371.1 hypothetical protein 1077018 3121144 PBPRB0936 Photobacterium profundum SS9 hypothetical protein YP_132608.1 1076062 R 298386 CDS YP_132609.1 54302616 3121145 complement(1077627..1078229) 1 NC_006371.1 hypothetical protein 1078229 3121145 PBPRB0937 Photobacterium profundum SS9 hypothetical protein YP_132609.1 1077627 R 298386 CDS YP_132610.1 54302617 3121147 complement(1078232..1078807) 1 NC_006371.1 hypothetical protein 1078807 3121147 PBPRB0938 Photobacterium profundum SS9 hypothetical protein YP_132610.1 1078232 R 298386 CDS YP_132611.1 54302618 3121149 complement(1078822..1079511) 1 NC_006371.1 hypothetical protein 1079511 3121149 PBPRB0939 Photobacterium profundum SS9 hypothetical protein YP_132611.1 1078822 R 298386 CDS YP_132612.1 54302619 3121154 complement(1079529..1080041) 1 NC_006371.1 hypothetical protein 1080041 3121154 PBPRB0940 Photobacterium profundum SS9 hypothetical protein YP_132612.1 1079529 R 298386 CDS YP_132613.1 54302620 3121155 1080179..1080649 1 NC_006371.1 transposase 1080649 3121155 PBPRB0941 Photobacterium profundum SS9 transposase YP_132613.1 1080179 D 298386 CDS YP_132614.1 54302621 3121157 1080694..1081215 1 NC_006371.1 transposase 1081215 3121157 PBPRB0942 Photobacterium profundum SS9 transposase YP_132614.1 1080694 D 298386 CDS YP_132615.1 54302622 3120689 complement(1081216..1081566) 1 NC_006371.1 hypothetical protein 1081566 3120689 PBPRB0943 Photobacterium profundum SS9 hypothetical protein YP_132615.1 1081216 R 298386 CDS YP_132616.1 54302623 3121158 complement(1081922..1082194) 1 NC_006371.1 hypothetical protein 1082194 3121158 PBPRB0944 Photobacterium profundum SS9 hypothetical protein YP_132616.1 1081922 R 298386 CDS YP_132617.1 54302624 3121166 complement(1082204..1083037) 1 NC_006371.1 outer membrane receptor protein 1083037 3121166 PBPRB0945 Photobacterium profundum SS9 outer membrane receptor protein YP_132617.1 1082204 R 298386 CDS YP_132618.1 54302625 3121167 complement(1083575..1083985) 1 NC_006371.1 hypothetical protein 1083985 3121167 PBPRB0946 Photobacterium profundum SS9 hypothetical protein YP_132618.1 1083575 R 298386 CDS YP_132619.1 54302626 3121171 complement(1084103..1084768) 1 NC_006371.1 hypothetical protein 1084768 3121171 PBPRB0947 Photobacterium profundum SS9 hypothetical protein YP_132619.1 1084103 R 298386 CDS YP_132620.1 54302627 3121172 complement(1084765..1085238) 1 NC_006371.1 hypothetical protein 1085238 3121172 PBPRB0948 Photobacterium profundum SS9 hypothetical protein YP_132620.1 1084765 R 298386 CDS YP_132621.1 54302628 3121174 complement(1085263..1085754) 1 NC_006371.1 hypothetical protein 1085754 3121174 PBPRB0949 Photobacterium profundum SS9 hypothetical protein YP_132621.1 1085263 R 298386 CDS YP_132622.1 54302629 3121176 complement(1085938..1087659) 1 NC_006371.1 hypothetical protein 1087659 3121176 PBPRB0950 Photobacterium profundum SS9 hypothetical protein YP_132622.1 1085938 R 298386 CDS YP_132623.1 54302630 3121177 complement(1087807..1088097) 1 NC_006371.1 hypothetical protein 1088097 3121177 PBPRB0951 Photobacterium profundum SS9 hypothetical protein YP_132623.1 1087807 R 298386 CDS YP_132624.1 54302631 3121178 1088412..1088675 1 NC_006371.1 hypothetical protein 1088675 3121178 PBPRB0952 Photobacterium profundum SS9 hypothetical protein YP_132624.1 1088412 D 298386 CDS YP_132625.1 54302632 3121180 1088820..1089176 1 NC_006371.1 hypothetical protein 1089176 3121180 PBPRB0953 Photobacterium profundum SS9 hypothetical protein YP_132625.1 1088820 D 298386 CDS YP_132626.1 54302633 3121201 1089325..1089600 1 NC_006371.1 hypothetical protein 1089600 3121201 PBPRB0954 Photobacterium profundum SS9 hypothetical protein YP_132626.1 1089325 D 298386 CDS YP_132627.1 54302634 3121185 1090380..1090652 1 NC_006371.1 hypothetical protein 1090652 3121185 PBPRB0955 Photobacterium profundum SS9 hypothetical protein YP_132627.1 1090380 D 298386 CDS YP_132628.1 54302635 3121189 1090609..1090908 1 NC_006371.1 hypothetical protein 1090908 3121189 PBPRB0956 Photobacterium profundum SS9 hypothetical protein YP_132628.1 1090609 D 298386 CDS YP_132629.1 54302636 3121349 1091550..1092206 1 NC_006371.1 hypothetical protein 1092206 3121349 PBPRB0957 Photobacterium profundum SS9 hypothetical protein YP_132629.1 1091550 D 298386 CDS YP_132630.1 54302637 3121190 1092382..1092777 1 NC_006371.1 hypothetical protein 1092777 3121190 PBPRB0958 Photobacterium profundum SS9 hypothetical protein YP_132630.1 1092382 D 298386 CDS YP_132631.1 54302638 3121192 complement(1093121..1093444) 1 NC_006371.1 hypothetical protein 1093444 3121192 PBPRB0959 Photobacterium profundum SS9 hypothetical protein YP_132631.1 1093121 R 298386 CDS YP_132632.1 54302639 3121195 1093648..1094523 1 NC_006371.1 DNA-directed RNA polymerase sigma factor 1094523 3121195 PBPRB0960 Photobacterium profundum SS9 DNA-directed RNA polymerase sigma factor YP_132632.1 1093648 D 298386 CDS YP_132633.1 54302640 3121196 1094760..1095296 1 NC_006371.1 hypothetical protein 1095296 3121196 PBPRB0961 Photobacterium profundum SS9 hypothetical protein YP_132633.1 1094760 D 298386 CDS YP_132634.1 54302641 3121205 complement(1095344..1095640) 1 NC_006371.1 hypothetical protein 1095640 3121205 PBPRB0962 Photobacterium profundum SS9 hypothetical protein YP_132634.1 1095344 R 298386 CDS YP_132635.1 54302642 3121209 complement(1095856..1097022) 1 NC_006371.1 chromate resistance protein-like protein 1097022 3121209 PBPRB0963 Photobacterium profundum SS9 chromate resistance protein-like protein YP_132635.1 1095856 R 298386 CDS YP_132636.1 54302643 3121210 1097501..1098427 1 NC_006371.1 LysR family transcriptional regulator 1098427 3121210 PBPRB0964 Photobacterium profundum SS9 LysR family transcriptional regulator YP_132636.1 1097501 D 298386 CDS YP_132637.1 54302644 3121212 1098725..1100005 1 NC_006371.1 hypothetical protein 1100005 3121212 PBPRB0965 Photobacterium profundum SS9 hypothetical protein YP_132637.1 1098725 D 298386 CDS YP_132638.1 54302645 3121214 complement(1099993..1100409) 1 NC_006371.1 manganese transporter 1100409 3121214 PBPRB0966 Photobacterium profundum SS9 manganese transporter YP_132638.1 1099993 R 298386 CDS YP_132639.1 54302646 3121215 1101051..1104347 1 NC_006371.1 hypothetical protein 1104347 3121215 PBPRB0967 Photobacterium profundum SS9 hypothetical protein YP_132639.1 1101051 D 298386 CDS YP_132640.1 54302647 3121218 1104397..1104606 1 NC_006371.1 hypothetical protein 1104606 3121218 PBPRB0968 Photobacterium profundum SS9 hypothetical protein YP_132640.1 1104397 D 298386 CDS YP_132641.1 54302648 3121219 1104607..1104948 1 NC_006371.1 hypothetical protein 1104948 3121219 PBPRB0969 Photobacterium profundum SS9 hypothetical protein YP_132641.1 1104607 D 298386 CDS YP_132642.1 54302649 3121222 1105123..1106103 1 NC_006371.1 hypothetical protein 1106103 3121222 PBPRB0970 Photobacterium profundum SS9 hypothetical protein YP_132642.1 1105123 D 298386 CDS YP_132643.1 54302650 3121223 1106356..1106637 1 NC_006371.1 hypothetical protein 1106637 3121223 PBPRB0971 Photobacterium profundum SS9 hypothetical protein YP_132643.1 1106356 D 298386 CDS YP_132644.1 54302651 3121225 complement(1106703..1108007) 1 NC_006371.1 hypothetical protein 1108007 3121225 PBPRB0972 Photobacterium profundum SS9 hypothetical protein YP_132644.1 1106703 R 298386 CDS YP_132645.1 54302652 3121230 complement(1108007..1108450) 1 NC_006371.1 hypothetical protein 1108450 3121230 PBPRB0973 Photobacterium profundum SS9 hypothetical protein YP_132645.1 1108007 R 298386 CDS YP_132646.1 54302653 3121231 1108664..1109080 1 NC_006371.1 hypothetical protein 1109080 3121231 PBPRB0974 Photobacterium profundum SS9 hypothetical protein YP_132646.1 1108664 D 298386 CDS YP_132647.1 54302654 3121235 complement(1109221..1109790) 1 NC_006371.1 hypothetical protein 1109790 3121235 PBPRB0975 Photobacterium profundum SS9 hypothetical protein YP_132647.1 1109221 R 298386 CDS YP_132648.1 54302655 3121244 complement(1109803..1111281) 1 NC_006371.1 hypothetical protein 1111281 3121244 PBPRB0976 Photobacterium profundum SS9 hypothetical protein YP_132648.1 1109803 R 298386 CDS YP_132649.1 54302656 3121246 complement(1111297..1113615) 1 NC_006371.1 hypothetical protein 1113615 3121246 PBPRB0977 Photobacterium profundum SS9 hypothetical protein YP_132649.1 1111297 R 298386 CDS YP_132650.1 54302657 3121248 complement(1113627..1115744) 1 NC_006371.1 outer membrane receptor protein 1115744 3121248 PBPRB0978 Photobacterium profundum SS9 outer membrane receptor protein YP_132650.1 1113627 R 298386 CDS YP_132651.1 54302658 3121249 complement(1115762..1117771) 1 NC_006371.1 oligopeptidase B 1117771 3121249 PBPRB0979 Photobacterium profundum SS9 oligopeptidase B YP_132651.1 1115762 R 298386 CDS YP_132652.1 54302659 3121250 complement(1117985..1119394) 1 NC_006371.1 hypothetical protein 1119394 3121250 PBPRB0980 Photobacterium profundum SS9 hypothetical protein YP_132652.1 1117985 R 298386 CDS YP_132653.1 54302660 3121255 1119565..1120533 1 NC_006371.1 hypothetical protein 1120533 3121255 PBPRB0981 Photobacterium profundum SS9 hypothetical protein YP_132653.1 1119565 D 298386 CDS YP_132654.1 54302661 3121259 complement(1120665..1122089) 1 NC_006371.1 ATP-dependent RNA helicase 1122089 3121259 PBPRB0982 Photobacterium profundum SS9 ATP-dependent RNA helicase YP_132654.1 1120665 R 298386 CDS YP_132655.1 54302662 3121260 complement(1122282..1123298) 1 NC_006371.1 UDP-glucose 4-epimerase 1123298 3121260 PBPRB0983 Photobacterium profundum SS9 UDP-glucose 4-epimerase YP_132655.1 1122282 R 298386 CDS YP_132656.1 54302663 3121261 1123910..1124830 1 NC_006371.1 hypothetical protein 1124830 3121261 PBPRB0984 Photobacterium profundum SS9 hypothetical protein YP_132656.1 1123910 D 298386 CDS YP_132657.1 54302664 3121263 1124958..1126007 1 NC_006371.1 hypothetical protein 1126007 3121263 PBPRB0985 Photobacterium profundum SS9 hypothetical protein YP_132657.1 1124958 D 298386 CDS YP_132658.1 54302665 3121269 1126143..1126682 1 NC_006371.1 MutT/NUDIX family protein 1126682 3121269 PBPRB0986 Photobacterium profundum SS9 MutT/NUDIX family protein YP_132658.1 1126143 D 298386 CDS YP_132659.1 54302666 3121270 1126941..1127513 1 NC_006371.1 hypothetical protein 1127513 3121270 PBPRB0987 Photobacterium profundum SS9 hypothetical protein YP_132659.1 1126941 D 298386 CDS YP_132660.1 54302667 3121272 complement(1127628..1128179) 1 NC_006371.1 hypothetical protein 1128179 3121272 PBPRB0988 Photobacterium profundum SS9 hypothetical protein YP_132660.1 1127628 R 298386 CDS YP_132661.1 54302668 3121276 complement(1128405..1129970) 1 NC_006371.1 hypothetical protein 1129970 3121276 PBPRB0989 Photobacterium profundum SS9 hypothetical protein YP_132661.1 1128405 R 298386 CDS YP_132662.1 54302669 3121279 1130137..1131237 1 NC_006371.1 hypothetical protein 1131237 3121279 PBPRB0990 Photobacterium profundum SS9 hypothetical protein YP_132662.1 1130137 D 298386 CDS YP_132663.1 54302670 3121287 complement(1131532..1133010) 1 NC_006371.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 1133010 3121287 PBPRB0991 Photobacterium profundum SS9 cobyric acid synthase YP_132663.1 1131532 R 298386 CDS YP_132664.1 54302671 3121290 complement(1134046..1134381) 1 NC_006371.1 hypothetical protein 1134381 3121290 PBPRB0992 Photobacterium profundum SS9 hypothetical protein YP_132664.1 1134046 R 298386 CDS YP_132665.1 54302672 3121293 complement(1134385..1134795) 1 NC_006371.1 hypothetical protein 1134795 3121293 PBPRB0993 Photobacterium profundum SS9 hypothetical protein YP_132665.1 1134385 R 298386 CDS YP_132666.1 54302673 3121300 complement(1135943..1136563) 1 NC_006371.1 hypothetical protein 1136563 3121300 PBPRB0994 Photobacterium profundum SS9 hypothetical protein YP_132666.1 1135943 R 298386 CDS YP_132667.1 54302674 3121301 complement(1136636..1137214) 1 NC_006371.1 cobinamide kinase 1137214 3121301 PBPRB0995 Photobacterium profundum SS9 cobinamide kinase YP_132667.1 1136636 R 298386 CDS YP_132668.1 54302675 3121303 1137452..1138273 1 NC_006371.1 hypothetical protein 1138273 3121303 PBPRB0996 Photobacterium profundum SS9 hypothetical protein YP_132668.1 1137452 D 298386 CDS YP_132669.1 54302676 3121306 1138315..1138761 1 NC_006371.1 hypothetical protein 1138761 3121306 PBPRB0997 Photobacterium profundum SS9 hypothetical protein YP_132669.1 1138315 D 298386 CDS YP_132670.1 54302677 3121309 complement(1138902..1139402) 1 NC_006371.1 hypothetical protein 1139402 3121309 PBPRB0998 Photobacterium profundum SS9 hypothetical protein YP_132670.1 1138902 R 298386 CDS YP_132671.1 54302678 3121313 1139616..1139897 1 NC_006371.1 hypothetical protein 1139897 3121313 PBPRB0999 Photobacterium profundum SS9 hypothetical protein YP_132671.1 1139616 D 298386 CDS YP_132672.1 54302679 3121316 complement(1140000..1140815) 1 NC_006371.1 beta-ketoadipate enol-lactone hydrolase 1140815 3121316 PBPRB1000 Photobacterium profundum SS9 beta-ketoadipate enol-lactone hydrolase YP_132672.1 1140000 R 298386 CDS YP_132673.1 54302680 3121327 complement(1140918..1142267) 1 NC_006371.1 hypothetical protein 1142267 3121327 PBPRB1001 Photobacterium profundum SS9 hypothetical protein YP_132673.1 1140918 R 298386 CDS YP_132674.1 54302681 3121329 complement(1142516..1142989) 1 NC_006371.1 hypothetical protein 1142989 3121329 PBPRB1002 Photobacterium profundum SS9 hypothetical protein YP_132674.1 1142516 R 298386 CDS YP_132675.1 54302682 3121331 complement(1143241..1144041) 1 NC_006371.1 hypothetical protein 1144041 3121331 PBPRB1003 Photobacterium profundum SS9 hypothetical protein YP_132675.1 1143241 R 298386 CDS YP_132676.1 54302683 3121339 complement(1144432..1144680) 1 NC_006371.1 hypothetical protein 1144680 3121339 PBPRB1004 Photobacterium profundum SS9 hypothetical protein YP_132676.1 1144432 R 298386 CDS YP_132677.1 54302684 3121342 1144679..1144984 1 NC_006371.1 glycerophosphoryl diester phosphodiesterase 1144984 3121342 PBPRB1005 Photobacterium profundum SS9 glycerophosphoryl diester phosphodiesterase YP_132677.1 1144679 D 298386 CDS YP_132678.1 54302685 3121343 1145032..1145382 1 NC_006371.1 hypothetical protein 1145382 3121343 PBPRB1006 Photobacterium profundum SS9 hypothetical protein YP_132678.1 1145032 D 298386 CDS YP_132679.1 54302686 3121350 1145610..1146893 1 NC_006371.1 Na+/H+ antiporter 1146893 3121350 PBPRB1007 Photobacterium profundum SS9 Na+/H+ antiporter YP_132679.1 1145610 D 298386 CDS YP_132680.1 54302687 3121351 1147474..1148769 1 NC_006371.1 ATP-dependent RNA helicase 1148769 3121351 PBPRB1008 Photobacterium profundum SS9 ATP-dependent RNA helicase YP_132680.1 1147474 D 298386 CDS YP_132681.1 54302688 3121352 complement(1149023..1149859) 1 NC_006371.1 carbohydrate kinase PfkB family 1149859 3121352 PBPRB1009 Photobacterium profundum SS9 carbohydrate kinase PfkB family YP_132681.1 1149023 R 298386 CDS YP_132682.1 54302689 3121358 1150083..1150922 1 NC_006371.1 hypothetical protein 1150922 3121358 PBPRB1010 Photobacterium profundum SS9 hypothetical protein YP_132682.1 1150083 D 298386 CDS YP_132683.1 54302690 3121363 1150931..1152784 1 NC_006371.1 hypothetical protein 1152784 3121363 PBPRB1011 Photobacterium profundum SS9 hypothetical protein YP_132683.1 1150931 D 298386 CDS YP_132684.1 54302691 3121368 complement(1152896..1154764) 1 NC_006371.1 beta-ketoacyl synthase 1154764 3121368 PBPRB1012 Photobacterium profundum SS9 beta-ketoacyl synthase YP_132684.1 1152896 R 298386 CDS YP_132685.1 54302692 3121369 1154936..1155916 1 NC_006371.1 hypothetical protein 1155916 3121369 PBPRB1013 Photobacterium profundum SS9 hypothetical protein YP_132685.1 1154936 D 298386 CDS YP_132686.1 54302693 3121371 1156103..1156621 1 NC_006371.1 hypothetical protein 1156621 3121371 PBPRB1014 Photobacterium profundum SS9 hypothetical protein YP_132686.1 1156103 D 298386 CDS YP_132687.1 54302694 3121376 complement(1156868..1157143) 1 NC_006371.1 hypothetical protein 1157143 3121376 PBPRB1015 Photobacterium profundum SS9 hypothetical protein YP_132687.1 1156868 R 298386 CDS YP_132688.1 54302695 3121381 complement(1157412..1160744) 1 NC_006371.1 pullulanase precursor 1160744 3121381 PBPRB1016 Photobacterium profundum SS9 pullulanase precursor YP_132688.1 1157412 R 298386 CDS YP_132689.1 54302696 3121385 1161197..1162087 1 NC_006371.1 LysR family transcriptional regulator 1162087 3121385 PBPRB1017 Photobacterium profundum SS9 LysR family transcriptional regulator YP_132689.1 1161197 D 298386 CDS YP_132690.1 54302697 3121386 complement(1162222..1162671) 1 NC_006371.1 deoxycytidylate deaminase 1162671 3121386 PBPRB1018 Photobacterium profundum SS9 deoxycytidylate deaminase YP_132690.1 1162222 R 298386 CDS YP_132691.1 54302698 3121397 complement(1162997..1163455) 1 NC_006371.1 hypothetical protein 1163455 3121397 PBPRB1019 Photobacterium profundum SS9 hypothetical protein YP_132691.1 1162997 R 298386 CDS YP_132692.1 54302699 3121398 complement(1163452..1164390) 1 NC_006371.1 protease 1164390 3121398 PBPRB1020 Photobacterium profundum SS9 protease YP_132692.1 1163452 R 298386 CDS YP_132693.1 54302700 3121400 complement(1164578..1164970) 1 NC_006371.1 hypothetical protein 1164970 3121400 PBPRB1021 Photobacterium profundum SS9 hypothetical protein YP_132693.1 1164578 R 298386 CDS YP_132694.1 54302701 3121403 1165176..1166252 1 NC_006371.1 hypothetical protein 1166252 3121403 PBPRB1022 Photobacterium profundum SS9 hypothetical protein YP_132694.1 1165176 D 298386 CDS YP_132695.1 54302702 3121404 complement(1166280..1166966) 1 NC_006371.1 ribosomal small subunit pseudouridine synthase A 1166966 3121404 PBPRB1023 Photobacterium profundum SS9 ribosomal small subunit pseudouridine synthase A YP_132695.1 1166280 R 298386 CDS YP_132696.1 54302703 3121410 complement(1167279..1168883) 1 NC_006371.1 BCCT family transporter 1168883 3121410 PBPRB1024 Photobacterium profundum SS9 BCCT family transporter YP_132696.1 1167279 R 298386 CDS YP_132697.1 54302704 3121411 complement(1169425..1170957) 1 NC_006371.1 hypothetical protein 1170957 3121411 PBPRB1025 Photobacterium profundum SS9 hypothetical protein YP_132697.1 1169425 R 298386 CDS YP_132698.1 54302705 3121483 1171020..1171301 1 NC_006371.1 hypothetical protein 1171301 3121483 PBPRB1026 Photobacterium profundum SS9 hypothetical protein YP_132698.1 1171020 D 298386 CDS YP_132699.1 54302706 3121414 complement(1171292..1173649) 1 NC_006371.1 hypothetical protein 1173649 3121414 PBPRB1027 Photobacterium profundum SS9 hypothetical protein YP_132699.1 1171292 R 298386 CDS YP_132700.1 54302707 3121416 complement(1173651..1174115) 1 NC_006371.1 hypothetical protein 1174115 3121416 PBPRB1028 Photobacterium profundum SS9 hypothetical protein YP_132700.1 1173651 R 298386 CDS YP_132701.1 54302708 3121417 complement(1174255..1175700) 1 NC_006371.1 hypothetical protein 1175700 3121417 PBPRB1029 Photobacterium profundum SS9 hypothetical protein YP_132701.1 1174255 R 298386 CDS YP_132702.1 54302709 3121262 complement(1175704..1176294) 1 NC_006371.1 hypothetical protein 1176294 3121262 PBPRB1030 Photobacterium profundum SS9 hypothetical protein YP_132702.1 1175704 R 298386 CDS YP_132703.1 54302710 3121418 complement(1176323..1177801) 1 NC_006371.1 hypothetical protein 1177801 3121418 PBPRB1031 Photobacterium profundum SS9 hypothetical protein YP_132703.1 1176323 R 298386 CDS YP_132704.1 54302711 3121421 complement(1177741..1178559) 1 NC_006371.1 hypothetical protein 1178559 3121421 PBPRB1032 Photobacterium profundum SS9 hypothetical protein YP_132704.1 1177741 R 298386 CDS YP_132705.1 54302712 3121428 complement(1178608..1179093) 1 NC_006371.1 hypothetical protein 1179093 3121428 PBPRB1033 Photobacterium profundum SS9 hypothetical protein YP_132705.1 1178608 R 298386 CDS YP_132706.1 54302713 3121429 complement(1179204..1181225) 1 NC_006371.1 hypothetical protein 1181225 3121429 PBPRB1034 Photobacterium profundum SS9 hypothetical protein YP_132706.1 1179204 R 298386 CDS YP_132707.1 54302714 3121431 1182061..1182855 1 NC_006371.1 transcriptional regulator GlpR 1182855 3121431 PBPRB1035 Photobacterium profundum SS9 transcriptional regulator GlpR YP_132707.1 1182061 D 298386 CDS YP_132708.1 54302715 3121432 1183238..1184014 1 NC_006371.1 sugar metabolism transcriptional regulator 1184014 3121432 PBPRB1036 Photobacterium profundum SS9 sugar metabolism transcriptional regulator YP_132708.1 1183238 D 298386 CDS YP_132709.1 54302716 3121434 1184023..1185327 1 NC_006371.1 tagatose 6-phosphate kinase 1185327 3121434 PBPRB1037 Photobacterium profundum SS9 tagatose 6-phosphate kinase YP_132709.1 1184023 D 298386 CDS YP_132710.1 54302717 3121435 1186528..1187001 1 NC_006371.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake;involved in N-acetylgalactosamine transport; PTS system N-acetylgalactosamine-specific transporter subunit IIB 1187001 3121435 PBPRB1038 Photobacterium profundum SS9 PTS system N-acetylgalactosamine-specific transporter subunit IIB YP_132710.1 1186528 D 298386 CDS YP_132711.1 54302718 3121438 1187019..1187795 1 NC_006371.1 N-acetylgalactosamine-specific IID component, PTS system 1187795 3121438 PBPRB1039 Photobacterium profundum SS9 N-acetylgalactosamine-specific IID component, PTS system YP_132711.1 1187019 D 298386 CDS YP_132712.1 54302719 3121439 1187785..1188672 1 NC_006371.1 N-acetylgalactosamine-specific IID component, PTS system 1188672 3121439 PBPRB1040 Photobacterium profundum SS9 N-acetylgalactosamine-specific IID component, PTS system YP_132712.1 1187785 D 298386 CDS YP_132713.1 54302720 3121442 1188748..1189188 1 NC_006371.1 phosphotransferase system enzyme subunit, mannose/fructose-specific component IIA 1189188 3121442 PBPRB1041 Photobacterium profundum SS9 phosphotransferase system enzyme subunit, mannose/fructose-specific component IIA YP_132713.1 1188748 D 298386 CDS YP_132714.1 54302721 3121444 1189178..1190371 1 NC_006371.1 N-acetylglucosamine-6-phosphate deacetylase 1190371 3121444 PBPRB1042 Photobacterium profundum SS9 N-acetylglucosamine-6-phosphate deacetylase YP_132714.1 1189178 D 298386 CDS YP_132715.1 54302722 3121447 1190362..1191216 1 NC_006371.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; tagatose-bisphosphate aldolase 1191216 gatY 3121447 gatY Photobacterium profundum SS9 tagatose-bisphosphate aldolase YP_132715.1 1190362 D 298386 CDS YP_132716.1 54302723 3121457 complement(1191415..1192338) 1 NC_006371.1 LysR family transcriptional regulator 1192338 3121457 PBPRB1044 Photobacterium profundum SS9 LysR family transcriptional regulator YP_132716.1 1191415 R 298386 CDS YP_132717.1 54302724 3121454 1192418..1193125 1 NC_006371.1 dehydrogenase 1193125 3121454 PBPRB1045 Photobacterium profundum SS9 dehydrogenase YP_132717.1 1192418 D 298386 CDS YP_132718.1 54302725 3121323 1193210..1194394 1 NC_006371.1 major facilitator superfamily transporter 1194394 3121323 PBPRB1046 Photobacterium profundum SS9 major facilitator superfamily transporter YP_132718.1 1193210 D 298386 CDS YP_132719.1 54302726 3121462 complement(1194827..1195393) 1 NC_006371.1 hypothetical protein 1195393 3121462 PBPRB1047 Photobacterium profundum SS9 hypothetical protein YP_132719.1 1194827 R 298386 CDS YP_132720.1 54302727 3121463 1195616..1196263 1 NC_006371.1 naphthoate synthase 1196263 3121463 PBPRB1048 Photobacterium profundum SS9 naphthoate synthase YP_132720.1 1195616 D 298386 CDS YP_132721.1 54302728 3121466 1196260..1196598 1 NC_006371.1 dihydroxynaphthoic acid synthase 1196598 3121466 PBPRB1049 Photobacterium profundum SS9 dihydroxynaphthoic acid synthase YP_132721.1 1196260 D 298386 CDS YP_132722.1 54302729 3121467 complement(1196643..1197113) 1 NC_006371.1 hypothetical protein 1197113 3121467 PBPRB1050 Photobacterium profundum SS9 hypothetical protein YP_132722.1 1196643 R 298386 CDS YP_132723.1 54302730 3121469 1197222..1197521 1 NC_006371.1 hypothetical protein 1197521 3121469 PBPRB1051 Photobacterium profundum SS9 hypothetical protein YP_132723.1 1197222 D 298386 CDS YP_132724.1 54302731 3121477 1197769..1198122 1 NC_006371.1 hypothetical protein 1198122 3121477 PBPRB1052 Photobacterium profundum SS9 hypothetical protein YP_132724.1 1197769 D 298386 CDS YP_132725.1 54302732 3121478 1198525..1198971 1 NC_006371.1 nitric-oxide reductase 1198971 3121478 PBPRB1053 Photobacterium profundum SS9 nitric-oxide reductase YP_132725.1 1198525 D 298386 CDS YP_132726.1 54302733 3121481 1198975..1200363 1 NC_006371.1 nitric-oxide reductase subunit B 1200363 3121481 PBPRB1054 Photobacterium profundum SS9 nitric-oxide reductase subunit B YP_132726.1 1198975 D 298386 CDS YP_132727.1 54302734 3121489 1200488..1202329 1 NC_006371.1 dinitrification protein NorD 1202329 3121489 PBPRB1055 Photobacterium profundum SS9 dinitrification protein NorD YP_132727.1 1200488 D 298386 CDS YP_132728.1 54302735 3121490 1202601..1202969 1 NC_006371.1 hypothetical protein 1202969 3121490 PBPRB1056 Photobacterium profundum SS9 hypothetical protein YP_132728.1 1202601 D 298386 CDS YP_132729.1 54302736 3121494 complement(1202981..1203790) 1 NC_006371.1 denitrification regulatory protein NirQ 1203790 3121494 PBPRB1057 Photobacterium profundum SS9 denitrification regulatory protein NirQ YP_132729.1 1202981 R 298386 CDS YP_132730.1 54302737 3121492 complement(1204172..1204426) 1 NC_006371.1 hypothetical protein 1204426 3121492 PBPRB1058 Photobacterium profundum SS9 hypothetical protein YP_132730.1 1204172 R 298386 CDS YP_132731.1 54302738 3121495 complement(1204433..1205050) 1 NC_006371.1 cytochrome c oxidase polypeptide III 1205050 3121495 PBPRB1059 Photobacterium profundum SS9 cytochrome c oxidase polypeptide III YP_132731.1 1204433 R 298386 CDS YP_132732.1 54302739 3121499 complement(1205119..1206027) 1 NC_006371.1 hypothetical protein 1206027 3121499 PBPRB1060 Photobacterium profundum SS9 hypothetical protein YP_132732.1 1205119 R 298386 CDS YP_132733.1 54302740 3121500 complement(1206371..1206805) 1 NC_006371.1 hypothetical protein 1206805 3121500 PBPRB1061 Photobacterium profundum SS9 hypothetical protein YP_132733.1 1206371 R 298386 CDS YP_132734.1 54302741 3121502 complement(1207255..1207617) 1 NC_006371.1 hypothetical protein 1207617 3121502 PBPRB1062 Photobacterium profundum SS9 hypothetical protein YP_132734.1 1207255 R 298386 CDS YP_132735.1 54302742 3121514 complement(1207861..1208286) 1 NC_006371.1 hypothetical protein 1208286 3121514 PBPRB1063 Photobacterium profundum SS9 hypothetical protein YP_132735.1 1207861 R 298386 CDS YP_132736.1 54302743 3121518 complement(1208513..1208767) 1 NC_006371.1 hypothetical protein 1208767 3121518 PBPRB1064 Photobacterium profundum SS9 hypothetical protein YP_132736.1 1208513 R 298386 CDS YP_132737.1 54302744 3121519 complement(1209016..1209597) 1 NC_006371.1 oxidoreductase 1209597 3121519 PBPRB1065 Photobacterium profundum SS9 oxidoreductase YP_132737.1 1209016 R 298386 CDS YP_132738.1 54302745 3121520 complement(1209979..1210506) 1 NC_006371.1 acetyltransferase 1210506 3121520 PBPRB1066 Photobacterium profundum SS9 acetyltransferase YP_132738.1 1209979 R 298386 CDS YP_132739.1 54302746 3121521 complement(1210543..1210773) 1 NC_006371.1 hypothetical protein 1210773 3121521 PBPRB1067 Photobacterium profundum SS9 hypothetical protein YP_132739.1 1210543 R 298386 CDS YP_132740.1 54302747 3121524 complement(1211071..1212933) 1 NC_006371.1 hypothetical protein 1212933 3121524 PBPRB1068 Photobacterium profundum SS9 hypothetical protein YP_132740.1 1211071 R 298386 CDS YP_132741.1 54302748 3121525 1213125..1214411 1 NC_006371.1 transposase 1214411 3121525 PBPRB1069 Photobacterium profundum SS9 transposase YP_132741.1 1213125 D 298386 CDS YP_132742.1 54302749 3121528 complement(1216243..1216974) 1 NC_006371.1 transposase 1216974 3121528 PBPRB1070 Photobacterium profundum SS9 transposase YP_132742.1 1216243 R 298386 CDS YP_132743.1 54302750 3121533 1217260..1218870 1 NC_006371.1 hypothetical protein 1218870 3121533 PBPRB1071 Photobacterium profundum SS9 hypothetical protein YP_132743.1 1217260 D 298386 CDS YP_132744.1 54302751 3121536 1219313..1220536 1 NC_006371.1 transposase 1220536 3121536 PBPRB1072 Photobacterium profundum SS9 transposase YP_132744.1 1219313 D 298386 CDS YP_132745.1 54302752 3121537 1220888..1222042 1 NC_006371.1 hypothetical protein 1222042 3121537 PBPRB1073 Photobacterium profundum SS9 hypothetical protein YP_132745.1 1220888 D 298386 CDS YP_132746.1 54302753 3121545 complement(1222177..1222488) 1 NC_006371.1 hypothetical protein 1222488 3121545 PBPRB1074 Photobacterium profundum SS9 hypothetical protein YP_132746.1 1222177 R 298386 CDS YP_132747.1 54302754 3121546 complement(1222873..1223202) 1 NC_006371.1 hypothetical protein 1223202 3121546 PBPRB1075 Photobacterium profundum SS9 hypothetical protein YP_132747.1 1222873 R 298386 CDS YP_132748.1 54302755 3121549 complement(1223232..1223555) 1 NC_006371.1 ISVme-ORF2 1223555 3121549 PBPRB1076 Photobacterium profundum SS9 ISVme-ORF2 YP_132748.1 1223232 R 298386 CDS YP_132749.1 54302756 3121551 complement(1223552..1223860) 1 NC_006371.1 hypothetical protein 1223860 3121551 PBPRB1077 Photobacterium profundum SS9 hypothetical protein YP_132749.1 1223552 R 298386 CDS YP_132750.1 54302757 3121552 1224878..1226233 1 NC_006371.1 hypothetical protein 1226233 3121552 PBPRB1078 Photobacterium profundum SS9 hypothetical protein YP_132750.1 1224878 D 298386 CDS YP_132751.1 54302758 3121555 complement(1226318..1227373) 1 NC_006371.1 oxidoreductase 1227373 3121555 PBPRB1079 Photobacterium profundum SS9 oxidoreductase YP_132751.1 1226318 R 298386 CDS YP_132752.1 54302759 3121556 complement(1227376..1227903) 1 NC_006371.1 hypothetical protein 1227903 3121556 PBPRB1080 Photobacterium profundum SS9 hypothetical protein YP_132752.1 1227376 R 298386 CDS YP_132753.1 54302760 3121557 complement(1228088..1228963) 1 NC_006371.1 virK protein 1228963 3121557 PBPRB1081 Photobacterium profundum SS9 virK protein YP_132753.1 1228088 R 298386 CDS YP_132754.1 54302761 3121562 complement(1229312..1229599) 1 NC_006371.1 hypothetical protein 1229599 3121562 PBPRB1082 Photobacterium profundum SS9 hypothetical protein YP_132754.1 1229312 R 298386 CDS YP_132755.1 54302762 3121563 1229896..1230144 1 NC_006371.1 hypothetical protein 1230144 3121563 PBPRB1083 Photobacterium profundum SS9 hypothetical protein YP_132755.1 1229896 D 298386 CDS YP_132756.1 54302763 3121564 complement(1230278..1231249) 1 NC_006371.1 two-component sensor 1231249 3121564 PBPRB1084 Photobacterium profundum SS9 two-component sensor YP_132756.1 1230278 R 298386 CDS YP_132757.1 54302764 3121569 1231356..1231637 1 NC_006371.1 hypothetical protein 1231637 3121569 PBPRB1085 Photobacterium profundum SS9 hypothetical protein YP_132757.1 1231356 D 298386 CDS YP_132758.1 54302765 3121571 1231775..1232470 1 NC_006371.1 hypothetical protein 1232470 3121571 PBPRB1086 Photobacterium profundum SS9 hypothetical protein YP_132758.1 1231775 D 298386 CDS YP_132759.1 54302766 3121573 1232547..1233176 1 NC_006371.1 hypothetical protein 1233176 3121573 PBPRB1087 Photobacterium profundum SS9 hypothetical protein YP_132759.1 1232547 D 298386 CDS YP_132760.1 54302767 3121581 1233167..1234228 1 NC_006371.1 hypothetical protein 1234228 3121581 PBPRB1088 Photobacterium profundum SS9 hypothetical protein YP_132760.1 1233167 D 298386 CDS YP_132761.1 54302768 3121583 complement(1234310..1234627) 1 NC_006371.1 hypothetical protein 1234627 3121583 PBPRB1089 Photobacterium profundum SS9 hypothetical protein YP_132761.1 1234310 R 298386 CDS YP_132762.1 54302769 3121558 complement(1234747..1235433) 1 NC_006371.1 hypothetical protein 1235433 3121558 PBPRB1090 Photobacterium profundum SS9 hypothetical protein YP_132762.1 1234747 R 298386 CDS YP_132763.1 54302770 3121580 1235907..1236317 1 NC_006371.1 hypothetical protein 1236317 3121580 PBPRB1091 Photobacterium profundum SS9 hypothetical protein YP_132763.1 1235907 D 298386 CDS YP_132764.1 54302771 3121585 1236623..1237267 1 NC_006371.1 hypothetical protein 1237267 3121585 PBPRB1092 Photobacterium profundum SS9 hypothetical protein YP_132764.1 1236623 D 298386 CDS YP_132765.1 54302772 3121589 1237477..1238364 1 NC_006371.1 catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase 1238364 3121589 PBPRB1093 Photobacterium profundum SS9 DNA ligase YP_132765.1 1237477 D 298386 CDS YP_132766.1 54302773 3121593 1238808..1239965 1 NC_006371.1 pyruvate dehydrogenase E1 component, alpha subunit 1239965 3121593 PBPRB1094 Photobacterium profundum SS9 pyruvate dehydrogenase E1 component, alpha subunit YP_132766.1 1238808 D 298386 CDS YP_132767.1 54302774 3121594 1239958..1240941 1 NC_006371.1 putaive pyruvate dehydrogenase E1 component, beta subunit 1240941 3121594 PBPRB1095 Photobacterium profundum SS9 putaive pyruvate dehydrogenase E1 component, beta subunit YP_132767.1 1239958 D 298386 CDS YP_132768.1 54302775 3121595 1240932..1242101 1 NC_006371.1 Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; branched-chain alpha-keto acid dehydrogenase subunit E2 1242101 3121595 PBPRB1096 Photobacterium profundum SS9 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_132768.1 1240932 D 298386 CDS YP_132769.1 54302776 3121598 complement(1242154..1243149) 1 NC_006371.1 electron transfer flavoprotein, alpha subunit 1243149 3121598 PBPRB1097 Photobacterium profundum SS9 electron transfer flavoprotein, alpha subunit YP_132769.1 1242154 R 298386 CDS YP_132770.1 54302777 3121601 complement(1243216..1244019) 1 NC_006371.1 electron transfer flavoprotein,beta subunit 1244019 3121601 PBPRB1098 Photobacterium profundum SS9 electron transfer flavoprotein,beta subunit YP_132770.1 1243216 R 298386 CDS YP_132771.1 54302778 3121605 1244236..1245912 1 NC_006371.1 electron transfer flavoprotein-ubiquinone oxidoreductase 1245912 3121605 PBPRB1099 Photobacterium profundum SS9 electron transfer flavoprotein-ubiquinone oxidoreductase YP_132771.1 1244236 D 298386 CDS YP_132772.1 54302779 3121610 complement(1246043..1248106) 1 NC_006371.1 glycosidase 1248106 3121610 PBPRB1100 Photobacterium profundum SS9 glycosidase YP_132772.1 1246043 R 298386 CDS YP_132773.1 54302780 3121614 complement(1248266..1248559) 1 NC_006371.1 hypothetical protein 1248559 3121614 PBPRB1101 Photobacterium profundum SS9 hypothetical protein YP_132773.1 1248266 R 298386 CDS YP_132774.1 54302781 3121615 complement(1248745..1249806) 1 NC_006371.1 saccharopine dehydrogenase 1249806 3121615 PBPRB1102 Photobacterium profundum SS9 saccharopine dehydrogenase YP_132774.1 1248745 R 298386 CDS YP_132775.1 54302782 3121609 complement(1249999..1250727) 1 NC_006371.1 glutathione S-transferase 1250727 3121609 PBPRB1103 Photobacterium profundum SS9 glutathione S-transferase YP_132775.1 1249999 R 298386 CDS YP_132776.1 54302783 3121629 1251068..1251424 1 NC_006371.1 hypothetical protein 1251424 3121629 PBPRB1104 Photobacterium profundum SS9 hypothetical protein YP_132776.1 1251068 D 298386 CDS YP_132777.1 54302784 3121632 1251432..1251686 1 NC_006371.1 hypothetical protein 1251686 3121632 PBPRB1105 Photobacterium profundum SS9 hypothetical protein YP_132777.1 1251432 D 298386 CDS YP_132778.1 54302785 3121634 complement(1252201..1252959) 1 NC_006371.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1252959 fabG 3121634 fabG Photobacterium profundum SS9 3-ketoacyl-ACP reductase YP_132778.1 1252201 R 298386 CDS YP_132779.1 54302786 3121636 complement(1252984..1253886) 1 NC_006371.1 3-hydroxyisobutyrate dehydrogenase 1253886 3121636 PBPRB1107 Photobacterium profundum SS9 3-hydroxyisobutyrate dehydrogenase YP_132779.1 1252984 R 298386 CDS YP_132780.1 54302787 3121639 complement(1253932..1255065) 1 NC_006371.1 enoyl-CoA hydratase 1255065 3121639 PBPRB1108 Photobacterium profundum SS9 enoyl-CoA hydratase YP_132780.1 1253932 R 298386 CDS YP_132781.1 54302788 3121640 complement(1255147..1255938) 1 NC_006371.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1255938 3121640 PBPRB1109 Photobacterium profundum SS9 enoyl-CoA hydratase YP_132781.1 1255147 R 298386 CDS YP_132782.1 54302789 3121643 complement(1256014..1257204) 1 NC_006371.1 acyl-CoA dehydrogenase 1257204 3121643 PBPRB1110 Photobacterium profundum SS9 acyl-CoA dehydrogenase YP_132782.1 1256014 R 298386 CDS YP_132783.1 54302790 3121644 complement(1257247..1258830) 1 NC_006371.1 methylmalonate-semialdehyde dehydrogenase 1258830 3121644 PBPRB1111 Photobacterium profundum SS9 methylmalonate-semialdehyde dehydrogenase YP_132783.1 1257247 R 298386 CDS YP_132784.1 54302791 3121646 complement(1258779..1260026) 1 NC_006371.1 acyl-CoA thiolase 1260026 3121646 PBPRB1112 Photobacterium profundum SS9 acyl-CoA thiolase YP_132784.1 1258779 R 298386 CDS YP_132785.1 54302792 3121645 1260300..1260677 1 NC_006371.1 transcriptional regulator 1260677 3121645 PBPRB1113 Photobacterium profundum SS9 transcriptional regulator YP_132785.1 1260300 D 298386 CDS YP_132786.1 54302793 3121619 1260726..1261895 1 NC_006371.1 acyl-CoA dehydrogenase 1261895 3121619 PBPRB1114 Photobacterium profundum SS9 acyl-CoA dehydrogenase YP_132786.1 1260726 D 298386 CDS YP_132787.1 54302794 3121723 1261979..1262830 1 NC_006371.1 propionyl-CoA carboxylase(beta subunit) protein 1262830 3121723 PBPRB1115 Photobacterium profundum SS9 propionyl-CoA carboxylase(beta subunit) protein YP_132787.1 1261979 D 298386 CDS YP_132788.1 54302795 3121624 1263000..1263584 1 NC_006371.1 propionyl-CoA carboxylase(beta subunit) protein 1263584 3121624 PBPRB1116 Photobacterium profundum SS9 propionyl-CoA carboxylase(beta subunit) protein YP_132788.1 1263000 D 298386 CDS YP_132789.1 54302796 3119991 1263647..1264099 1 NC_006371.1 enoyl-CoA hydratase/isomerase 1264099 3119991 PBPRB1117 Photobacterium profundum SS9 enoyl-CoA hydratase/isomerase YP_132789.1 1263647 D 298386 CDS YP_132790.1 54302797 3121701 1264017..1264574 1 NC_006371.1 hypothetical protein 1264574 3121701 PBPRB1118 Photobacterium profundum SS9 hypothetical protein YP_132790.1 1264017 D 298386 CDS YP_132791.1 54302798 3121746 1264571..1265473 1 NC_006371.1 hydroxymethylglutaryl-CoA lyase 1265473 3121746 PBPRB1119 Photobacterium profundum SS9 hydroxymethylglutaryl-CoA lyase YP_132791.1 1264571 D 298386 CDS YP_132792.1 54302799 3121745 complement(1265913..1266191) 1 NC_006371.1 hypothetical protein 1266191 3121745 PBPRB1120 Photobacterium profundum SS9 hypothetical protein YP_132792.1 1265913 R 298386 CDS YP_132793.1 54302800 3121690 1266604..1267662 1 NC_006371.1 hypothetical protein 1267662 3121690 PBPRB1121 Photobacterium profundum SS9 hypothetical protein YP_132793.1 1266604 D 298386 CDS YP_132794.1 54302801 3119980 complement(1267766..1269010) 1 NC_006371.1 hypothetical protein 1269010 3119980 PBPRB1122 Photobacterium profundum SS9 hypothetical protein YP_132794.1 1267766 R 298386 CDS YP_132795.1 54302802 3119987 complement(1269352..1270581) 1 NC_006371.1 hypothetical protein 1270581 3119987 PBPRB1123 Photobacterium profundum SS9 hypothetical protein YP_132795.1 1269352 R 298386 CDS YP_132796.1 54302803 3119960 complement(1270578..1271261) 1 NC_006371.1 ABC transporter, ATP-binding protein 1271261 3119960 PBPRB1124 Photobacterium profundum SS9 ABC transporter, ATP-binding protein YP_132796.1 1270578 R 298386 CDS YP_132797.1 54302804 3121617 complement(1271264..1272496) 1 NC_006371.1 hypothetical protein 1272496 3121617 PBPRB1125 Photobacterium profundum SS9 hypothetical protein YP_132797.1 1271264 R 298386 CDS YP_132798.1 54302805 3121623 complement(1272486..1273715) 1 NC_006371.1 hypothetical protein 1273715 3121623 PBPRB1126 Photobacterium profundum SS9 hypothetical protein YP_132798.1 1272486 R 298386 CDS YP_132799.1 54302806 3121689 complement(1273809..1274561) 1 NC_006371.1 hypothetical protein 1274561 3121689 PBPRB1127 Photobacterium profundum SS9 hypothetical protein YP_132799.1 1273809 R 298386 CDS YP_132800.1 54302807 3121698 complement(1274874..1275689) 1 NC_006371.1 amino acid ABC transporter substrate-binding protein 1275689 3121698 PBPRB1128 Photobacterium profundum SS9 amino acid ABC transporter substrate-binding protein YP_132800.1 1274874 R 298386 CDS YP_132801.1 54302808 3121697 complement(1275667..1276755) 1 NC_006371.1 histidinol phosphate aminotransferase 1276755 3121697 PBPRB1129 Photobacterium profundum SS9 histidinol phosphate aminotransferase YP_132801.1 1275667 R 298386 CDS YP_132802.1 54302809 3121693 1276956..1277822 1 NC_006371.1 hypothetical protein 1277822 3121693 PBPRB1130 Photobacterium profundum SS9 hypothetical protein YP_132802.1 1276956 D 298386 CDS YP_132803.1 54302810 3121699 complement(1277846..1278460) 1 NC_006371.1 transporter protein 1278460 3121699 PBPRB1131 Photobacterium profundum SS9 transporter protein YP_132803.1 1277846 R 298386 CDS YP_132804.1 54302811 3121691 1278641..1279609 1 NC_006371.1 transcriptional regulator 1279609 3121691 PBPRB1132 Photobacterium profundum SS9 transcriptional regulator YP_132804.1 1278641 D 298386 CDS YP_132805.1 54302812 3121695 complement(1279617..1279886) 1 NC_006371.1 hypothetical protein 1279886 3121695 PBPRB1133 Photobacterium profundum SS9 hypothetical protein YP_132805.1 1279617 R 298386 CDS YP_132806.1 54302813 3119994 1280517..1281014 1 NC_006371.1 hypothetical protein 1281014 3119994 PBPRB1134 Photobacterium profundum SS9 hypothetical protein YP_132806.1 1280517 D 298386 CDS YP_132807.1 54302814 3119988 complement(1281240..1282157) 1 NC_006371.1 endonuclease 1282157 3119988 PBPRB1135 Photobacterium profundum SS9 endonuclease YP_132807.1 1281240 R 298386 CDS YP_132808.1 54302815 3119962 1282460..1284025 1 NC_006371.1 hypothetical protein 1284025 3119962 PBPRB1136 Photobacterium profundum SS9 hypothetical protein YP_132808.1 1282460 D 298386 CDS YP_132809.1 54302816 3121631 1284107..1284565 1 NC_006371.1 hypothetical protein 1284565 3121631 PBPRB1137 Photobacterium profundum SS9 hypothetical protein YP_132809.1 1284107 D 298386 CDS YP_132810.1 54302817 3121597 complement(1284726..1285415) 1 NC_006371.1 methyltransferase 1285415 3121597 PBPRB1138 Photobacterium profundum SS9 methyltransferase YP_132810.1 1284726 R 298386 CDS YP_132811.1 54302818 3121622 1286040..1286579 1 NC_006371.1 hypothetical protein 1286579 3121622 PBPRB1139 Photobacterium profundum SS9 hypothetical protein YP_132811.1 1286040 D 298386 CDS YP_132812.1 54302819 3121604 1287115..1287564 1 NC_006371.1 hypothetical protein 1287564 3121604 PBPRB1140 Photobacterium profundum SS9 hypothetical protein YP_132812.1 1287115 D 298386 CDS YP_132813.1 54302820 3121668 1287704..1288984 1 NC_006371.1 hypothetical protein 1288984 3121668 PBPRB1141 Photobacterium profundum SS9 hypothetical protein YP_132813.1 1287704 D 298386 CDS YP_132814.1 54302821 3121630 complement(1289115..1289363) 1 NC_006371.1 hypothetical protein 1289363 3121630 PBPRB1142 Photobacterium profundum SS9 hypothetical protein YP_132814.1 1289115 R 298386 CDS YP_132815.1 54302822 3121620 complement(1289684..1290271) 1 NC_006371.1 hypothetical protein 1290271 3121620 PBPRB1143 Photobacterium profundum SS9 hypothetical protein YP_132815.1 1289684 R 298386 CDS YP_132816.1 54302823 3121628 complement(1290365..1291384) 1 NC_006371.1 transposase 1291384 3121628 PBPRB1144 Photobacterium profundum SS9 transposase YP_132816.1 1290365 R 298386 CDS YP_132817.1 54302824 3121625 complement(1291417..1291938) 1 NC_006371.1 hypothetical protein 1291938 3121625 PBPRB1145 Photobacterium profundum SS9 hypothetical protein YP_132817.1 1291417 R 298386 CDS YP_132818.1 54302825 3121613 complement(1291950..1292657) 1 NC_006371.1 hypothetical protein 1292657 3121613 PBPRB1146 Photobacterium profundum SS9 hypothetical protein YP_132818.1 1291950 R 298386 CDS YP_132819.1 54302826 3121612 1292833..1293177 1 NC_006371.1 hypothetical protein 1293177 3121612 PBPRB1147 Photobacterium profundum SS9 hypothetical protein YP_132819.1 1292833 D 298386 CDS YP_132820.1 54302827 3121638 1293464..1294609 1 NC_006371.1 hypothetical protein 1294609 3121638 PBPRB1148 Photobacterium profundum SS9 hypothetical protein YP_132820.1 1293464 D 298386 CDS YP_132821.1 54302828 3121659 1295066..1296061 1 NC_006371.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 1296061 rbgA 3121659 rbgA Photobacterium profundum SS9 ribosomal biogenesis GTPase YP_132821.1 1295066 D 298386 CDS YP_132822.1 54302829 3121657 1296741..1297901 1 NC_006371.1 transport protein 1297901 3121657 PBPRB1150 Photobacterium profundum SS9 transport protein YP_132822.1 1296741 D 298386 CDS YP_132823.1 54302830 3121654 complement(1298632..1300368) 1 NC_006371.1 hypothetical protein 1300368 3121654 PBPRB1151 Photobacterium profundum SS9 hypothetical protein YP_132823.1 1298632 R 298386 CDS YP_132824.1 54302831 3121560 complement(1300343..1301335) 1 NC_006371.1 hypothetical protein 1301335 3121560 PBPRB1152 Photobacterium profundum SS9 hypothetical protein YP_132824.1 1300343 R 298386 CDS YP_132825.1 54302832 3121660 1301439..1301924 1 NC_006371.1 hypothetical protein 1301924 3121660 PBPRB1153 Photobacterium profundum SS9 hypothetical protein YP_132825.1 1301439 D 298386 CDS YP_132826.1 54302833 3121611 1301929..1302975 1 NC_006371.1 hypothetical protein 1302975 3121611 PBPRB1154 Photobacterium profundum SS9 hypothetical protein YP_132826.1 1301929 D 298386 CDS YP_132827.1 54302834 3121570 complement(1303254..1304192) 1 NC_006371.1 ROK family protein 1304192 3121570 PBPRB1155 Photobacterium profundum SS9 ROK family protein YP_132827.1 1303254 R 298386 CDS YP_132828.1 54302835 3121618 1304503..1304718 1 NC_006371.1 hypothetical protein 1304718 3121618 PBPRB1156 Photobacterium profundum SS9 hypothetical protein YP_132828.1 1304503 D 298386 CDS YP_132829.1 54302836 3121602 complement(1304882..1305304) 1 NC_006371.1 MarR family transcriptional regulator 1305304 3121602 PBPRB1157 Photobacterium profundum SS9 MarR family transcriptional regulator YP_132829.1 1304882 R 298386 CDS YP_132830.1 54302837 3121599 1305639..1306634 1 NC_006371.1 alcohol dehydrogenase 1306634 3121599 PBPRB1158 Photobacterium profundum SS9 alcohol dehydrogenase YP_132830.1 1305639 D 298386 CDS YP_132831.1 54302838 3121579 complement(1306734..1307327) 1 NC_006371.1 hypothetical protein 1307327 3121579 PBPRB1159 Photobacterium profundum SS9 hypothetical protein YP_132831.1 1306734 R 298386 CDS YP_132832.1 54302839 3121603 complement(1307327..1308973) 1 NC_006371.1 paraquat-inducible protein B 1308973 3121603 PBPRB1160 Photobacterium profundum SS9 paraquat-inducible protein B YP_132832.1 1307327 R 298386 CDS YP_132833.1 54302840 3121607 complement(1308966..1310354) 1 NC_006371.1 paraquat-inducible protein A 1310354 3121607 PBPRB1161 Photobacterium profundum SS9 paraquat-inducible protein A YP_132833.1 1308966 R 298386 CDS YP_132834.1 54302841 3121576 complement(1310684..1312069) 1 NC_006371.1 transposase 1312069 3121576 PBPRB1162 Photobacterium profundum SS9 transposase YP_132834.1 1310684 R 298386 CDS YP_132835.1 54302842 3121577 complement(1312211..1312549) 1 NC_006371.1 pterin-4-alpha-carbinolamine dehydratase 1312549 3121577 PBPRB1163 Photobacterium profundum SS9 pterin-4-alpha-carbinolamine dehydratase YP_132835.1 1312211 R 298386 CDS YP_132836.1 54302843 3121567 complement(1312542..1313354) 1 NC_006371.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 1313354 phhA 3121567 phhA Photobacterium profundum SS9 phenylalanine 4-monooxygenase YP_132836.1 1312542 R 298386 CDS YP_132837.1 54302844 3121498 1313899..1315056 1 NC_006371.1 oxidoreductase 1315056 3121498 PBPRB1165 Photobacterium profundum SS9 oxidoreductase YP_132837.1 1313899 D 298386 CDS YP_132838.1 54302845 3121526 1315146..1316168 1 NC_006371.1 fumarylacetoacetate hydrolase family protein 1316168 3121526 PBPRB1166 Photobacterium profundum SS9 fumarylacetoacetate hydrolase family protein YP_132838.1 1315146 D 298386 CDS YP_132839.1 54302846 3121531 1316190..1316849 1 NC_006371.1 glutathione S-transferase family protein 1316849 3121531 PBPRB1167 Photobacterium profundum SS9 glutathione S-transferase family protein YP_132839.1 1316190 D 298386 CDS YP_132840.1 54302847 3121550 1316938..1318944 1 NC_006371.1 AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase; acetoacetyl-CoA synthetase 1318944 3121550 PBPRB1168 Photobacterium profundum SS9 acetoacetyl-CoA synthetase YP_132840.1 1316938 D 298386 CDS YP_132841.1 54302848 3121587 1319121..1320113 1 NC_006371.1 cobalamin synthesis protein 1320113 3121587 PBPRB1169 Photobacterium profundum SS9 cobalamin synthesis protein YP_132841.1 1319121 D 298386 CDS YP_132842.1 54302849 3121547 1320164..1321591 1 NC_006371.1 TldD protein 1321591 3121547 PBPRB1170 Photobacterium profundum SS9 TldD protein YP_132842.1 1320164 D 298386 CDS YP_132843.1 54302850 3121532 1321591..1322934 1 NC_006371.1 PmbA-related protein 1322934 3121532 PBPRB1171 Photobacterium profundum SS9 PmbA-related protein YP_132843.1 1321591 D 298386 CDS YP_132844.1 54302851 3121504 1323280..1323774 1 NC_006371.1 hypothetical protein 1323774 3121504 PBPRB1172 Photobacterium profundum SS9 hypothetical protein YP_132844.1 1323280 D 298386 CDS YP_132845.1 54302852 3121582 1323790..1325340 1 NC_006371.1 ABC transporter, ATP-binding protein 1325340 3121582 PBPRB1173 Photobacterium profundum SS9 ABC transporter, ATP-binding protein YP_132845.1 1323790 D 298386 CDS YP_132846.1 54302853 3121530 complement(1325579..1326643) 1 NC_006371.1 catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis; L-asparaginase II 1326643 ansB 3121530 ansB Photobacterium profundum SS9 L-asparaginase II YP_132846.1 1325579 R 298386 CDS YP_132847.1 54302854 3121527 complement(1326903..1327154) 1 NC_006371.1 hypothetical protein 1327154 3121527 PBPRB1175 Photobacterium profundum SS9 hypothetical protein YP_132847.1 1326903 R 298386 CDS YP_132848.1 54302855 3121566 complement(1327546..1328022) 1 NC_006371.1 MarR family transcriptional regulator 1328022 3121566 PBPRB1176 Photobacterium profundum SS9 MarR family transcriptional regulator YP_132848.1 1327546 R 298386 CDS YP_132849.1 54302856 3121515 1328155..1328577 1 NC_006371.1 organic hydroperoxide resistance protein 1328577 3121515 PBPRB1177 Photobacterium profundum SS9 organic hydroperoxide resistance protein YP_132849.1 1328155 D 298386 CDS YP_132850.1 54302857 3121548 complement(1328710..1329162) 1 NC_006371.1 thioesterase 1329162 3121548 PBPRB1178 Photobacterium profundum SS9 thioesterase YP_132850.1 1328710 R 298386 CDS YP_132851.1 54302858 3121523 1329588..1330658 1 NC_006371.1 hypothetical protein 1330658 3121523 PBPRB1179 Photobacterium profundum SS9 hypothetical protein YP_132851.1 1329588 D 298386 CDS YP_132852.1 54302859 3121565 complement(1330816..1331913) 1 NC_006371.1 4-hydroxyphenylpyruvate dioxygenase 1331913 3121565 PBPRB1180 Photobacterium profundum SS9 4-hydroxyphenylpyruvate dioxygenase YP_132852.1 1330816 R 298386 CDS YP_132853.1 54302860 3121554 1332250..1333227 1 NC_006371.1 hypothetical protein 1333227 3121554 PBPRB1181 Photobacterium profundum SS9 hypothetical protein YP_132853.1 1332250 D 298386 CDS YP_132854.1 54302861 3121243 complement(1333317..1333871) 1 NC_006371.1 glutathione peroxidase 1333871 3121243 PBPRB1182 Photobacterium profundum SS9 glutathione peroxidase YP_132854.1 1333317 R 298386 CDS YP_132855.1 54302862 3121568 1333945..1334505 1 NC_006371.1 hypothetical protein 1334505 3121568 PBPRB1183 Photobacterium profundum SS9 hypothetical protein YP_132855.1 1333945 D 298386 CDS YP_132856.1 54302863 3121503 complement(1334686..1335720) 1 NC_006371.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 1335720 3121503 PBPRB1184 Photobacterium profundum SS9 adenosine deaminase YP_132856.1 1334686 R 298386 CDS YP_132857.1 54302864 3121509 1335905..1337002 1 NC_006371.1 hipothetical membrane protein 1337002 3121509 PBPRB1185 Photobacterium profundum SS9 hipothetical membrane protein YP_132857.1 1335905 D 298386 CDS YP_132858.1 54302865 3121590 1337164..1337718 1 NC_006371.1 hypothetical protein 1337718 3121590 PBPRB1186 Photobacterium profundum SS9 hypothetical protein YP_132858.1 1337164 D 298386 CDS YP_132859.1 54302866 3121529 1338514..1339551 1 NC_006371.1 hypothetical protein 1339551 3121529 PBPRB1187 Photobacterium profundum SS9 hypothetical protein YP_132859.1 1338514 D 298386 CDS YP_132860.1 54302867 3121508 complement(1339698..1339973) 1 NC_006371.1 hypothetical protein 1339973 3121508 PBPRB1188 Photobacterium profundum SS9 hypothetical protein YP_132860.1 1339698 R 298386 CDS YP_132861.1 54302868 3121241 complement(1339974..1340495) 1 NC_006371.1 hypothetical protein 1340495 3121241 PBPRB1189 Photobacterium profundum SS9 hypothetical protein YP_132861.1 1339974 R 298386 CDS YP_132862.1 54302869 3121346 1341122..1341547 1 NC_006371.1 hypothetical protein 1341547 3121346 PBPRB1190 Photobacterium profundum SS9 hypothetical protein YP_132862.1 1341122 D 298386 CDS YP_132863.1 54302870 3121578 1341695..1342042 1 NC_006371.1 hypothetical protein 1342042 3121578 PBPRB1191 Photobacterium profundum SS9 hypothetical protein YP_132863.1 1341695 D 298386 CDS YP_132864.1 54302871 3121277 1342158..1342571 1 NC_006371.1 hypothetical protein 1342571 3121277 PBPRB1192 Photobacterium profundum SS9 hypothetical protein YP_132864.1 1342158 D 298386 CDS YP_132865.1 54302872 3121574 1343192..1343485 1 NC_006371.1 plasmid stabilization element ParE 1343485 3121574 PBPRB1193 Photobacterium profundum SS9 plasmid stabilization element ParE YP_132865.1 1343192 D 298386 CDS YP_132866.1 54302873 3121588 complement(1343599..1344354) 1 NC_006371.1 hypothetical protein 1344354 3121588 PBPRB1194 Photobacterium profundum SS9 hypothetical protein YP_132866.1 1343599 R 298386 CDS YP_132867.1 54302874 3121572 1345149..1345445 1 NC_006371.1 hypothetical protein 1345445 3121572 PBPRB1195 Photobacterium profundum SS9 hypothetical protein YP_132867.1 1345149 D 298386 CDS YP_132868.1 54302875 3121559 1345585..1346106 1 NC_006371.1 transposase 1346106 3121559 PBPRB1196 Photobacterium profundum SS9 transposase YP_132868.1 1345585 D 298386 CDS YP_132869.1 54302876 3121227 1346468..1347163 1 NC_006371.1 transposase 1347163 3121227 PBPRB1197 Photobacterium profundum SS9 transposase YP_132869.1 1346468 D 298386 CDS YP_132870.1 54302877 3121575 1347263..1347673 1 NC_006371.1 hypothetical protein 1347673 3121575 PBPRB1198 Photobacterium profundum SS9 hypothetical protein YP_132870.1 1347263 D 298386 CDS YP_132871.1 54302878 3121242 complement(1348085..1349209) 1 NC_006371.1 RfbQRSO155-1 1349209 3121242 PBPRB1199 Photobacterium profundum SS9 RfbQRSO155-1 YP_132871.1 1348085 R 298386 CDS YP_132872.1 54302879 3121419 1349928..1350176 1 NC_006371.1 hypothetical protein 1350176 3121419 PBPRB1200 Photobacterium profundum SS9 hypothetical protein YP_132872.1 1349928 D 298386 CDS YP_132873.1 54302880 3121340 1350166..1350456 1 NC_006371.1 relE protein 1350456 3121340 PBPRB1201 Photobacterium profundum SS9 relE protein YP_132873.1 1350166 D 298386 CDS YP_132874.1 54302881 3121294 1351015..1352295 1 NC_006371.1 hypothetical protein 1352295 3121294 PBPRB1202 Photobacterium profundum SS9 hypothetical protein YP_132874.1 1351015 D 298386 CDS YP_132875.1 54302882 3121497 1352411..1352662 1 NC_006371.1 hypothetical protein 1352662 3121497 PBPRB1203 Photobacterium profundum SS9 hypothetical protein YP_132875.1 1352411 D 298386 CDS YP_132876.1 54302883 3121505 1353209..1353835 1 NC_006371.1 hypothetical protein 1353835 3121505 PBPRB1204 Photobacterium profundum SS9 hypothetical protein YP_132876.1 1353209 D 298386 CDS YP_132877.1 54302884 3121534 complement(1354596..1355495) 1 NC_006371.1 hypothetical protein 1355495 3121534 PBPRB1205 Photobacterium profundum SS9 hypothetical protein YP_132877.1 1354596 R 298386 CDS YP_132878.1 54302885 3121538 complement(1355502..1356377) 1 NC_006371.1 permease of ABC transporter 1356377 3121538 PBPRB1206 Photobacterium profundum SS9 permease of ABC transporter YP_132878.1 1355502 R 298386 CDS YP_132879.1 54302886 3121517 complement(1356377..1357135) 1 NC_006371.1 ATP-binding component of ABC transporter 1357135 3121517 PBPRB1207 Photobacterium profundum SS9 ATP-binding component of ABC transporter YP_132879.1 1356377 R 298386 CDS YP_132880.1 54302887 3121535 complement(1357138..1358097) 1 NC_006371.1 adhesion protein 1358097 3121535 PBPRB1208 Photobacterium profundum SS9 adhesion protein YP_132880.1 1357138 R 298386 CDS YP_132881.1 54302888 3121544 complement(1358164..1358748) 1 NC_006371.1 hypothetical protein 1358748 3121544 PBPRB1209 Photobacterium profundum SS9 hypothetical protein YP_132881.1 1358164 R 298386 CDS YP_132882.1 54302889 3121451 complement(1358745..1359077) 1 NC_006371.1 hypothetical protein 1359077 3121451 PBPRB1210 Photobacterium profundum SS9 hypothetical protein YP_132882.1 1358745 R 298386 CDS YP_132883.1 54302890 3121373 complement(1359204..1360043) 1 NC_006371.1 hypothetical protein 1360043 3121373 PBPRB1211 Photobacterium profundum SS9 hypothetical protein YP_132883.1 1359204 R 298386 CDS YP_132884.1 54302891 3121543 complement(1360149..1360685) 1 NC_006371.1 hypothetical protein 1360685 3121543 PBPRB1212 Photobacterium profundum SS9 hypothetical protein YP_132884.1 1360149 R 298386 CDS YP_132885.1 54302892 3121591 complement(1360725..1361351) 1 NC_006371.1 hypothetical protein 1361351 3121591 PBPRB1213 Photobacterium profundum SS9 hypothetical protein YP_132885.1 1360725 R 298386 CDS YP_132886.1 54302893 3121501 1361517..1362098 1 NC_006371.1 hypothetical protein 1362098 3121501 PBPRB1214 Photobacterium profundum SS9 hypothetical protein YP_132886.1 1361517 D 298386 CDS YP_132887.1 54302894 3121561 1362220..1362879 1 NC_006371.1 membrane-associated protein 1362879 3121561 PBPRB1215 Photobacterium profundum SS9 membrane-associated protein YP_132887.1 1362220 D 298386 CDS YP_132888.1 54302895 3121506 complement(1362951..1364117) 1 NC_006371.1 hypothetical protein 1364117 3121506 PBPRB1216 Photobacterium profundum SS9 hypothetical protein YP_132888.1 1362951 R 298386 CDS YP_132889.1 54302896 3121211 complement(1364123..1364806) 1 NC_006371.1 TonB2 protein 1364806 3121211 PBPRB1217 Photobacterium profundum SS9 TonB2 protein YP_132889.1 1364123 R 298386 CDS YP_132890.1 54302897 3121460 complement(1364806..1365210) 1 NC_006371.1 TonB system transport protein ExbD2 1365210 3121460 PBPRB1218 Photobacterium profundum SS9 TonB system transport protein ExbD2 YP_132890.1 1364806 R 298386 CDS YP_132891.1 54302898 3121516 complement(1365207..1365740) 1 NC_006371.1 TonB system transport protein ExbB2 1365740 3121516 PBPRB1219 Photobacterium profundum SS9 TonB system transport protein ExbB2 YP_132891.1 1365207 R 298386 CDS YP_132892.1 54302899 3121420 complement(1365740..1367104) 1 NC_006371.1 biopolymer transport protein ExbB-related protein 1367104 3121420 PBPRB1220 Photobacterium profundum SS9 biopolymer transport protein ExbB-related protein YP_132892.1 1365740 R 298386 CDS YP_132893.1 54302900 3121473 complement(1367107..1367889) 1 NC_006371.1 hypothetical protein 1367889 3121473 PBPRB1221 Photobacterium profundum SS9 hypothetical protein YP_132893.1 1367107 R 298386 CDS YP_132894.1 54302901 3121423 complement(1368284..1370380) 1 NC_006371.1 ferrichrome-iron receptor 1370380 3121423 PBPRB1222 Photobacterium profundum SS9 ferrichrome-iron receptor YP_132894.1 1368284 R 298386 CDS YP_132895.1 54302902 3121586 complement(1370663..1371730) 1 NC_006371.1 hypothetical protein 1371730 3121586 PBPRB1223 Photobacterium profundum SS9 hypothetical protein YP_132895.1 1370663 R 298386 CDS YP_132896.1 54302903 3121380 complement(1372076..1372996) 1 NC_006371.1 transcriptional regulator 1372996 3121380 PBPRB1224 Photobacterium profundum SS9 transcriptional regulator YP_132896.1 1372076 R 298386 CDS YP_132897.1 54302904 3121513 complement(1373847..1375355) 1 NC_006371.1 hypothetical protein 1375355 3121513 PBPRB1225 Photobacterium profundum SS9 hypothetical protein YP_132897.1 1373847 R 298386 CDS YP_132898.1 54302905 3121512 1375704..1377077 1 NC_006371.1 cysteinyl-tRNA synthetase CysS 1377077 3121512 PBPRB1226 Photobacterium profundum SS9 cysteinyl-tRNA synthetase CysS YP_132898.1 1375704 D 298386 CDS YP_132899.1 54302906 3121486 1377374..1377754 1 NC_006371.1 hypothetical protein 1377754 3121486 PBPRB1227 Photobacterium profundum SS9 hypothetical protein YP_132899.1 1377374 D 298386 CDS YP_132900.1 54302907 3121507 complement(1377863..1378411) 1 NC_006371.1 hypothetical protein 1378411 3121507 PBPRB1228 Photobacterium profundum SS9 hypothetical protein YP_132900.1 1377863 R 298386 CDS YP_132901.1 54302908 3121372 1378616..1379260 1 NC_006371.1 DNA polymerase III 1379260 3121372 PBPRB1229 Photobacterium profundum SS9 DNA polymerase III YP_132901.1 1378616 D 298386 CDS YP_132902.1 54302909 3121361 complement(1379340..1379705) 1 NC_006371.1 hypothetical protein 1379705 3121361 PBPRB1230 Photobacterium profundum SS9 hypothetical protein YP_132902.1 1379340 R 298386 CDS YP_132903.1 54302910 3121511 1379983..1381056 1 NC_006371.1 hypothetical protein 1381056 3121511 PBPRB1231 Photobacterium profundum SS9 hypothetical protein YP_132903.1 1379983 D 298386 CDS YP_132904.1 54302911 3121391 complement(1381325..1382740) 1 NC_006371.1 ATP-dependent RNA helicase RhlE 1382740 3121391 PBPRB1232 Photobacterium profundum SS9 ATP-dependent RNA helicase RhlE YP_132904.1 1381325 R 298386 CDS YP_132905.1 54302912 3121378 complement(1382954..1383298) 1 NC_006371.1 hypothetical protein 1383298 3121378 PBPRB1233 Photobacterium profundum SS9 hypothetical protein YP_132905.1 1382954 R 298386 CDS YP_132906.1 54302913 3121285 1383615..1385525 1 NC_006371.1 2`,3`-cyclic-nucleotide 2`-phosphodiesterase 1385525 3121285 PBPRB1234 Photobacterium profundum SS9 2`,3`-cyclic-nucleotide 2`-phosphodiesterase YP_132906.1 1383615 D 298386 CDS YP_132907.1 54302914 3121458 complement(1385909..1386382) 1 NC_006371.1 hypothetical protein 1386382 3121458 PBPRB1235 Photobacterium profundum SS9 hypothetical protein YP_132907.1 1385909 R 298386 CDS YP_132908.1 54302915 3121288 complement(1386496..1387431) 1 NC_006371.1 hypothetical protein 1387431 3121288 PBPRB1236 Photobacterium profundum SS9 hypothetical protein YP_132908.1 1386496 R 298386 CDS YP_132909.1 54302916 3121234 complement(1387651..1388022) 1 NC_006371.1 hypothetical protein 1388022 3121234 PBPRB1237 Photobacterium profundum SS9 hypothetical protein YP_132909.1 1387651 R 298386 CDS YP_132910.1 54302917 3121608 complement(1388144..1388467) 1 NC_006371.1 DNA-binding protein 1388467 3121608 PBPRB1238 Photobacterium profundum SS9 DNA-binding protein YP_132910.1 1388144 R 298386 CDS YP_132911.1 54302918 3121170 1388861..1389184 1 NC_006371.1 hypothetical protein 1389184 3121170 PBPRB1239 Photobacterium profundum SS9 hypothetical protein YP_132911.1 1388861 D 298386 CDS YP_132912.1 54302919 3121281 1389401..1389715 1 NC_006371.1 hypothetical protein 1389715 3121281 PBPRB1240 Photobacterium profundum SS9 hypothetical protein YP_132912.1 1389401 D 298386 CDS YP_132913.1 54302920 3121468 1389931..1390218 1 NC_006371.1 hypothetical protein 1390218 3121468 PBPRB1241 Photobacterium profundum SS9 hypothetical protein YP_132913.1 1389931 D 298386 CDS YP_132914.1 54302921 3121354 1390241..1391158 1 NC_006371.1 glutamate permease 1391158 3121354 PBPRB1242 Photobacterium profundum SS9 glutamate permease YP_132914.1 1390241 D 298386 CDS YP_132915.1 54302922 3121487 1391394..1392044 1 NC_006371.1 hypothetical protein 1392044 3121487 PBPRB1243 Photobacterium profundum SS9 hypothetical protein YP_132915.1 1391394 D 298386 CDS YP_132916.1 54302923 3121252 complement(1392071..1392409) 1 NC_006371.1 hypothetical protein 1392409 3121252 PBPRB1244 Photobacterium profundum SS9 hypothetical protein YP_132916.1 1392071 R 298386 CDS YP_132917.1 54302924 3121202 complement(1392466..1393023) 1 NC_006371.1 rhomboid family protein 1393023 3121202 PBPRB1245 Photobacterium profundum SS9 rhomboid family protein YP_132917.1 1392466 R 298386 CDS YP_132918.1 54302925 3121345 1393322..1393726 1 NC_006371.1 hypothetical protein 1393726 3121345 PBPRB1246 Photobacterium profundum SS9 hypothetical protein YP_132918.1 1393322 D 298386 CDS YP_132919.1 54302926 3121232 complement(1393836..1394270) 1 NC_006371.1 transposase 1394270 3121232 PBPRB1247 Photobacterium profundum SS9 transposase YP_132919.1 1393836 R 298386 CDS YP_132920.1 54302927 3121292 complement(1394441..1394875) 1 NC_006371.1 MarR family transcriptional regulator 1394875 3121292 PBPRB1248 Photobacterium profundum SS9 MarR family transcriptional regulator YP_132920.1 1394441 R 298386 CDS YP_132921.1 54302928 3121446 1394979..1395293 1 NC_006371.1 hypothetical protein 1395293 3121446 PBPRB1249 Photobacterium profundum SS9 hypothetical protein YP_132921.1 1394979 D 298386 CDS YP_132922.1 54302929 3121472 complement(1396688..1397113) 1 NC_006371.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; a fusion protein of this enzyme with MsrB provides protection against oxidative stress in Neisseria gonorrhoeae; methionine sulfoxide reductase A 1397113 3121472 PBPRB1251 Photobacterium profundum SS9 methionine sulfoxide reductase A YP_132922.1 1396688 R 298386 CDS YP_132923.1 54302930 3121304 1397615..1398244 1 NC_006371.1 hypothetical protein 1398244 3121304 PBPRB1252 Photobacterium profundum SS9 hypothetical protein YP_132923.1 1397615 D 298386 CDS YP_132924.1 54302931 3121493 1398394..1398990 1 NC_006371.1 hypothetical protein 1398990 3121493 PBPRB1253 Photobacterium profundum SS9 hypothetical protein YP_132924.1 1398394 D 298386 CDS YP_132925.1 54302932 3121237 1399107..1399781 1 NC_006371.1 hypothetical protein 1399781 3121237 PBPRB1254 Photobacterium profundum SS9 hypothetical protein YP_132925.1 1399107 D 298386 CDS YP_132926.1 54302933 3121367 1399922..1400308 1 NC_006371.1 hypothetical protein 1400308 3121367 PBPRB1255 Photobacterium profundum SS9 hypothetical protein YP_132926.1 1399922 D 298386 CDS YP_132927.1 54302934 3121317 1400352..1400645 1 NC_006371.1 hypothetical protein 1400645 3121317 PBPRB1256 Photobacterium profundum SS9 hypothetical protein YP_132927.1 1400352 D 298386 CDS YP_132928.1 54302935 3121253 complement(1400728..1401534) 1 NC_006371.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1401534 3121253 PBPRB1257 Photobacterium profundum SS9 enoyl-CoA hydratase YP_132928.1 1400728 R 298386 CDS YP_132929.1 54302936 3121540 1401730..1403223 1 NC_006371.1 hypothetical protein 1403223 3121540 PBPRB1258 Photobacterium profundum SS9 hypothetical protein YP_132929.1 1401730 D 298386 CDS YP_132930.1 54302937 3121510 complement(1403230..1403715) 1 NC_006371.1 hypothetical protein 1403715 3121510 PBPRB1259 Photobacterium profundum SS9 hypothetical protein YP_132930.1 1403230 R 298386 CDS YP_132931.1 54302938 3121542 complement(1404421..1404744) 1 NC_006371.1 arsenical resistance operon repressor 1404744 3121542 PBPRB1260 Photobacterium profundum SS9 arsenical resistance operon repressor YP_132931.1 1404421 R 298386 CDS YP_132932.1 54302939 3121245 1404933..1405466 1 NC_006371.1 hypothetical protein 1405466 3121245 PBPRB1261 Photobacterium profundum SS9 hypothetical protein YP_132932.1 1404933 D 298386 CDS YP_132933.1 54302940 3121383 complement(1406286..1407338) 1 NC_006371.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1407338 3121383 PBPRB1262 Photobacterium profundum SS9 phospho-2-dehydro-3-deoxyheptonate aldolase YP_132933.1 1406286 R 298386 CDS YP_132934.1 54302941 3121311 1407788..1408549 1 NC_006371.1 amino acid ABC transporter 1408549 3121311 PBPRB1263 Photobacterium profundum SS9 amino acid ABC transporter YP_132934.1 1407788 D 298386 CDS YP_132935.1 54302942 3121445 1408586..1409416 1 NC_006371.1 amino acid ABC transporter, permease protein 1409416 3121445 PBPRB1264 Photobacterium profundum SS9 amino acid ABC transporter, permease protein YP_132935.1 1408586 D 298386 CDS YP_132936.1 54302943 3121310 1409468..1410277 1 NC_006371.1 amino acid ABC transporter 1410277 3121310 PBPRB1265 Photobacterium profundum SS9 amino acid ABC transporter YP_132936.1 1409468 D 298386 CDS YP_132937.1 54302944 3121295 1410280..1411227 1 NC_006371.1 amino acid ABC transporter, permease protein 1411227 3121295 PBPRB1266 Photobacterium profundum SS9 amino acid ABC transporter, permease protein YP_132937.1 1410280 D 298386 CDS YP_132938.1 54302945 3121409 complement(1411335..1413563) 1 NC_006371.1 hypothetical protein 1413563 3121409 PBPRB1267 Photobacterium profundum SS9 hypothetical protein YP_132938.1 1411335 R 298386 CDS YP_132939.1 54302946 3121275 complement(1414191..1414697) 1 NC_006371.1 hypothetical protein 1414697 3121275 PBPRB1268 Photobacterium profundum SS9 hypothetical protein YP_132939.1 1414191 R 298386 CDS YP_132940.1 54302947 3121364 complement(1414854..1415681) 1 NC_006371.1 short chain dehydrogenase 1415681 3121364 PBPRB1269 Photobacterium profundum SS9 short chain dehydrogenase YP_132940.1 1414854 R 298386 CDS YP_132941.1 54302948 3121240 1415916..1416563 1 NC_006371.1 hypothetical protein 1416563 3121240 PBPRB1270 Photobacterium profundum SS9 hypothetical protein YP_132941.1 1415916 D 298386 CDS YP_132942.1 54302949 3121430 1416977..1418218 1 NC_006371.1 phage integrase family protein 1418218 3121430 PBPRB1271 Photobacterium profundum SS9 phage integrase family protein YP_132942.1 1416977 D 298386 CDS YP_132943.1 54302950 3121274 complement(1418388..1419437) 1 NC_006371.1 hypothetical protein 1419437 3121274 PBPRB1272 Photobacterium profundum SS9 hypothetical protein YP_132943.1 1418388 R 298386 CDS YP_132944.1 54302951 3121424 complement(1419434..1419766) 1 NC_006371.1 hypothetical protein 1419766 3121424 PBPRB1273 Photobacterium profundum SS9 hypothetical protein YP_132944.1 1419434 R 298386 CDS YP_132945.1 54302952 3121334 complement(1419868..1423752) 1 NC_006371.1 hypothetical protein 1423752 3121334 PBPRB1274 Photobacterium profundum SS9 hypothetical protein YP_132945.1 1419868 R 298386 CDS YP_132946.1 54302953 3121307 complement(1424132..1424608) 1 NC_006371.1 hypothetical protein 1424608 3121307 PBPRB1275 Photobacterium profundum SS9 hypothetical protein YP_132946.1 1424132 R 298386 CDS YP_132947.1 54302954 3121320 complement(1424609..1424968) 1 NC_006371.1 hypothetical protein 1424968 3121320 PBPRB1276 Photobacterium profundum SS9 hypothetical protein YP_132947.1 1424609 R 298386 CDS YP_132948.1 54302955 3121408 complement(1424965..1427370) 1 NC_006371.1 hypothetical protein 1427370 3121408 PBPRB1277 Photobacterium profundum SS9 hypothetical protein YP_132948.1 1424965 R 298386 CDS YP_132949.1 54302956 3121268 complement(1427367..1427675) 1 NC_006371.1 hypothetical protein 1427675 3121268 PBPRB1278 Photobacterium profundum SS9 hypothetical protein YP_132949.1 1427367 R 298386 CDS YP_132950.1 54302957 3121326 complement(1427693..1428067) 1 NC_006371.1 hypothetical protein 1428067 3121326 PBPRB1279 Photobacterium profundum SS9 hypothetical protein YP_132950.1 1427693 R 298386 CDS YP_132951.1 54302958 3121356 complement(1428077..1428715) 1 NC_006371.1 hypothetical protein 1428715 3121356 PBPRB1280 Photobacterium profundum SS9 hypothetical protein YP_132951.1 1428077 R 298386 CDS YP_132952.1 54302959 3121465 complement(1428725..1429066) 1 NC_006371.1 hypothetical protein 1429066 3121465 PBPRB1281 Photobacterium profundum SS9 hypothetical protein YP_132952.1 1428725 R 298386 CDS YP_132953.1 54302960 3121456 complement(1429081..1429566) 1 NC_006371.1 hypothetical protein 1429566 3121456 PBPRB1282 Photobacterium profundum SS9 hypothetical protein YP_132953.1 1429081 R 298386 CDS YP_132954.1 54302961 3121278 complement(1429575..1429895) 1 NC_006371.1 hypothetical protein 1429895 3121278 PBPRB1283 Photobacterium profundum SS9 hypothetical protein YP_132954.1 1429575 R 298386 CDS YP_132955.1 54302962 3121328 complement(1429895..1430212) 1 NC_006371.1 hypothetical protein 1430212 3121328 PBPRB1284 Photobacterium profundum SS9 hypothetical protein YP_132955.1 1429895 R 298386 CDS YP_132956.1 54302963 3121283 complement(1430218..1430463) 1 NC_006371.1 hypothetical protein 1430463 3121283 PBPRB1285 Photobacterium profundum SS9 hypothetical protein YP_132956.1 1430218 R 298386 CDS YP_132957.1 54302964 3121236 complement(1430480..1431742) 1 NC_006371.1 gp36 major capsid-like protein 1431742 3121236 PBPRB1286 Photobacterium profundum SS9 gp36 major capsid-like protein YP_132957.1 1430480 R 298386 CDS YP_132958.1 54302965 3121330 complement(1431756..1432568) 1 NC_006371.1 hypothetical protein 1432568 3121330 PBPRB1287 Photobacterium profundum SS9 hypothetical protein YP_132958.1 1431756 R 298386 CDS YP_132959.1 54302966 3121324 complement(1432540..1433688) 1 NC_006371.1 phage portal protein 1433688 3121324 PBPRB1288 Photobacterium profundum SS9 phage portal protein YP_132959.1 1432540 R 298386 CDS YP_132960.1 54302967 3121476 complement(1433806..1435344) 1 NC_006371.1 terminase large subunit 1435344 3121476 PBPRB1289 Photobacterium profundum SS9 terminase large subunit YP_132960.1 1433806 R 298386 CDS YP_132961.1 54302968 3121254 complement(1435476..1435904) 1 NC_006371.1 hypothetical protein 1435904 3121254 PBPRB1290 Photobacterium profundum SS9 hypothetical protein YP_132961.1 1435476 R 298386 CDS YP_132962.1 54302969 3121319 complement(1436079..1436393) 1 NC_006371.1 hypothetical protein 1436393 3121319 PBPRB1291 Photobacterium profundum SS9 hypothetical protein YP_132962.1 1436079 R 298386 CDS YP_132963.1 54302970 3121355 1436516..1437013 1 NC_006371.1 hypothetical protein 1437013 3121355 PBPRB1292 Photobacterium profundum SS9 hypothetical protein YP_132963.1 1436516 D 298386 CDS YP_132964.1 54302971 3121335 1437004..1437675 1 NC_006371.1 hypothetical protein 1437675 3121335 PBPRB1293 Photobacterium profundum SS9 hypothetical protein YP_132964.1 1437004 D 298386 CDS YP_132965.1 54302972 3121384 complement(1437940..1438479) 1 NC_006371.1 hypothetical protein 1438479 3121384 PBPRB1294 Photobacterium profundum SS9 hypothetical protein YP_132965.1 1437940 R 298386 CDS YP_132966.1 54302973 3121305 complement(1438593..1439036) 1 NC_006371.1 hypothetical protein 1439036 3121305 PBPRB1295 Photobacterium profundum SS9 hypothetical protein YP_132966.1 1438593 R 298386 CDS YP_132967.1 54302974 3121488 complement(1439200..1439673) 1 NC_006371.1 hypothetical protein 1439673 3121488 PBPRB1296 Photobacterium profundum SS9 hypothetical protein YP_132967.1 1439200 R 298386 CDS YP_132968.1 54302975 3121470 complement(1440363..1440710) 1 NC_006371.1 transposase 1440710 3121470 PBPRB1297 Photobacterium profundum SS9 transposase YP_132968.1 1440363 R 298386 CDS YP_132969.1 54302976 3121480 complement(1440968..1441873) 1 NC_006371.1 LysR family transcriptional regulator 1441873 3121480 PBPRB1298 Photobacterium profundum SS9 LysR family transcriptional regulator YP_132969.1 1440968 R 298386 CDS YP_132970.1 54302977 3121475 1442157..1442516 1 NC_006371.1 hypothetical protein 1442516 3121475 PBPRB1299 Photobacterium profundum SS9 hypothetical protein YP_132970.1 1442157 D 298386 CDS YP_132971.1 54302978 3121359 complement(1442587..1443147) 1 NC_006371.1 hypothetical protein 1443147 3121359 PBPRB1300 Photobacterium profundum SS9 hypothetical protein YP_132971.1 1442587 R 298386 CDS YP_132972.1 54302979 3121348 complement(1443189..1443440) 1 NC_006371.1 hypothetical protein 1443440 3121348 PBPRB1301 Photobacterium profundum SS9 hypothetical protein YP_132972.1 1443189 R 298386 CDS YP_132973.1 54302980 3121455 complement(1443813..1444307) 1 NC_006371.1 hypothetical protein 1444307 3121455 PBPRB1302 Photobacterium profundum SS9 hypothetical protein YP_132973.1 1443813 R 298386 CDS YP_132974.1 54302981 3121393 complement(1445115..1445912) 1 NC_006371.1 hypothetical protein 1445912 3121393 PBPRB1303 Photobacterium profundum SS9 hypothetical protein YP_132974.1 1445115 R 298386 CDS YP_132975.1 54302982 3121448 complement(1445991..1446299) 1 NC_006371.1 hypothetical protein 1446299 3121448 PBPRB1304 Photobacterium profundum SS9 hypothetical protein YP_132975.1 1445991 R 298386 CDS YP_132976.1 54302983 3121228 1446725..1447063 1 NC_006371.1 hypothetical protein 1447063 3121228 PBPRB1305 Photobacterium profundum SS9 hypothetical protein YP_132976.1 1446725 D 298386 CDS YP_132977.1 54302984 3121314 1448277..1448879 1 NC_006371.1 hypothetical protein 1448879 3121314 PBPRB1306 Photobacterium profundum SS9 hypothetical protein YP_132977.1 1448277 D 298386 CDS YP_132978.1 54302985 3121296 complement(1448867..1450153) 1 NC_006371.1 transposase 1450153 3121296 PBPRB1307 Photobacterium profundum SS9 transposase YP_132978.1 1448867 R 298386 CDS YP_132979.1 54302986 3121427 1450255..1452402 1 NC_006371.1 hypothetical protein 1452402 3121427 PBPRB1308 Photobacterium profundum SS9 hypothetical protein YP_132979.1 1450255 D 298386 CDS YP_132980.1 54302987 3121370 1452503..1453321 1 NC_006371.1 hypothetical protein 1453321 3121370 PBPRB1309 Photobacterium profundum SS9 hypothetical protein YP_132980.1 1452503 D 298386 CDS YP_132981.1 54302988 3121333 1453437..1454096 1 NC_006371.1 hypothetical protein 1454096 3121333 PBPRB1310 Photobacterium profundum SS9 hypothetical protein YP_132981.1 1453437 D 298386 CDS YP_132982.1 54302989 3121461 1454237..1454905 1 NC_006371.1 hypothetical protein 1454905 3121461 PBPRB1311 Photobacterium profundum SS9 hypothetical protein YP_132982.1 1454237 D 298386 CDS YP_132983.1 54302990 3121233 complement(1455468..1456634) 1 NC_006371.1 DNA helicase 1456634 3121233 PBPRB1312 Photobacterium profundum SS9 DNA helicase YP_132983.1 1455468 R 298386 CDS YP_132984.1 54302991 3121412 complement(1456637..1457503) 1 NC_006371.1 hypothetical protein 1457503 3121412 PBPRB1313 Photobacterium profundum SS9 hypothetical protein YP_132984.1 1456637 R 298386 CDS YP_132985.1 54302992 3121485 complement(1457510..1457809) 1 NC_006371.1 hypothetical protein 1457809 3121485 PBPRB1314 Photobacterium profundum SS9 hypothetical protein YP_132985.1 1457510 R 298386 CDS YP_132986.1 54302993 3121464 1458037..1458369 1 NC_006371.1 hypothetical protein 1458369 3121464 PBPRB1315 Photobacterium profundum SS9 hypothetical protein YP_132986.1 1458037 D 298386 CDS YP_132987.1 54302994 3121362 1458756..1459541 1 NC_006371.1 hypothetical protein 1459541 3121362 PBPRB1316 Photobacterium profundum SS9 hypothetical protein YP_132987.1 1458756 D 298386 CDS YP_132988.1 54302995 3121413 1459578..1459940 1 NC_006371.1 transcriptional regulator 1459940 3121413 PBPRB1317 Photobacterium profundum SS9 transcriptional regulator YP_132988.1 1459578 D 298386 CDS YP_132989.1 54302996 3121199 complement(1460397..1460660) 1 NC_006371.1 hypothetical protein 1460660 3121199 PBPRB1318 Photobacterium profundum SS9 hypothetical protein YP_132989.1 1460397 R 298386 CDS YP_132990.1 54302997 3121450 complement(1461481..1462476) 1 NC_006371.1 glycine cleavage system T protein 1462476 3121450 PBPRB1319 Photobacterium profundum SS9 glycine cleavage system T protein YP_132990.1 1461481 R 298386 CDS YP_132991.1 54302998 3121405 complement(1462678..1464039) 1 NC_006371.1 sodium/alanine symporter 1464039 3121405 PBPRB1320 Photobacterium profundum SS9 sodium/alanine symporter YP_132991.1 1462678 R 298386 CDS YP_132992.1 54302999 3121298 complement(1464406..1465032) 1 NC_006371.1 HTH_3family transcriptional regulator 1465032 3121298 PBPRB1321 Photobacterium profundum SS9 HTH_3family transcriptional regulator YP_132992.1 1464406 R 298386 CDS YP_132993.1 54303000 3121443 1465604..1466899 1 NC_006371.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1466899 3121443 PBPRB1322 Photobacterium profundum SS9 serine hydroxymethyltransferase YP_132993.1 1465604 D 298386 CDS YP_132994.1 54303001 3121425 1467091..1467468 1 NC_006371.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 1467468 3121425 PBPRB1323 Photobacterium profundum SS9 glycine cleavage system protein H YP_132994.1 1467091 D 298386 CDS YP_132995.1 54303002 3121484 1467669..1470548 1 NC_006371.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 1470548 3121484 PBPRB1324 Photobacterium profundum SS9 glycine dehydrogenase YP_132995.1 1467669 D 298386 CDS YP_132996.1 54303003 3121436 complement(1471706..1472446) 1 NC_006371.1 hypothetical protein 1472446 3121436 PBPRB1325 Photobacterium profundum SS9 hypothetical protein YP_132996.1 1471706 R 298386 CDS YP_132997.1 54303004 3121402 complement(1473038..1474036) 1 NC_006371.1 hypothetical protein 1474036 3121402 PBPRB1326 Photobacterium profundum SS9 hypothetical protein YP_132997.1 1473038 R 298386 CDS YP_132998.1 54303005 3121387 complement(1474442..1475989) 1 NC_006371.1 methyl-accepting chemotaxis protein 1475989 3121387 PBPRB1327 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_132998.1 1474442 R 298386 CDS YP_132999.1 54303006 3121332 complement(1476361..1478511) 1 NC_006371.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching enzyme 1478511 3121332 PBPRB1328 Photobacterium profundum SS9 glycogen branching enzyme YP_132999.1 1476361 R 298386 CDS YP_133000.1 54303007 3121394 complement(1478574..1480748) 1 NC_006371.1 amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 1480748 malQ 3121394 malQ Photobacterium profundum SS9 4-alpha-glucanotransferase YP_133000.1 1478574 R 298386 CDS YP_133001.1 54303008 3121266 complement(1481193..1483655) 1 NC_006371.1 maltodextrin phosphorylase 1483655 3121266 PBPRB1330 Photobacterium profundum SS9 maltodextrin phosphorylase YP_133001.1 1481193 R 298386 CDS YP_133002.1 54303009 3121388 1484134..1486842 1 NC_006371.1 Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides; transcriptional regulator MalT 1486842 3121388 PBPRB1331 Photobacterium profundum SS9 transcriptional regulator MalT YP_133002.1 1484134 D 298386 CDS YP_133003.1 54303010 3121426 1486930..1487616 1 NC_006371.1 hypothetical protein 1487616 3121426 PBPRB1332 Photobacterium profundum SS9 hypothetical protein YP_133003.1 1486930 D 298386 CDS YP_133004.1 54303011 3121256 1487819..1488484 1 NC_006371.1 hypothetical protein 1488484 3121256 PBPRB1333 Photobacterium profundum SS9 hypothetical protein YP_133004.1 1487819 D 298386 CDS YP_133005.1 54303012 3121265 1488685..1488957 1 NC_006371.1 hypothetical protein 1488957 3121265 PBPRB1334 Photobacterium profundum SS9 hypothetical protein YP_133005.1 1488685 D 298386 CDS YP_133006.1 54303013 3121286 1489003..1489410 1 NC_006371.1 hypothetical protein 1489410 3121286 PBPRB1335 Photobacterium profundum SS9 hypothetical protein YP_133006.1 1489003 D 298386 CDS YP_133007.1 54303014 3121344 1489467..1489790 1 NC_006371.1 hypothetical protein 1489790 3121344 PBPRB1336 Photobacterium profundum SS9 hypothetical protein YP_133007.1 1489467 D 298386 CDS YP_133008.1 54303015 3121312 complement(1489826..1491562) 1 NC_006371.1 hypothetical protein 1491562 3121312 PBPRB1337 Photobacterium profundum SS9 hypothetical protein YP_133008.1 1489826 R 298386 CDS YP_133009.1 54303016 3121321 complement(1491576..1492889) 1 NC_006371.1 Zn-dependent peptidase 1492889 3121321 PBPRB1338 Photobacterium profundum SS9 Zn-dependent peptidase YP_133009.1 1491576 R 298386 CDS YP_133010.1 54303017 3121186 complement(1493075..1493941) 1 NC_006371.1 transcriptional regulator 1493941 3121186 PBPRB1339 Photobacterium profundum SS9 transcriptional regulator YP_133010.1 1493075 R 298386 CDS YP_133011.1 54303018 3121251 1494053..1495120 1 NC_006371.1 secretion protein 1495120 3121251 PBPRB1340 Photobacterium profundum SS9 secretion protein YP_133011.1 1494053 D 298386 CDS YP_133012.1 54303019 3121449 1495159..1496244 1 NC_006371.1 hypothetical protein 1496244 3121449 PBPRB1341 Photobacterium profundum SS9 hypothetical protein YP_133012.1 1495159 D 298386 CDS YP_133013.1 54303020 3121194 1496659..1497471 1 NC_006371.1 hypothetical protein 1497471 3121194 PBPRB1342 Photobacterium profundum SS9 hypothetical protein YP_133013.1 1496659 D 298386 CDS YP_133014.1 54303021 3121375 1497481..1498791 1 NC_006371.1 hypothetical protein 1498791 3121375 PBPRB1343 Photobacterium profundum SS9 hypothetical protein YP_133014.1 1497481 D 298386 CDS YP_133015.1 54303022 3121366 complement(1498828..1499556) 1 NC_006371.1 hypothetical protein 1499556 3121366 PBPRB1344 Photobacterium profundum SS9 hypothetical protein YP_133015.1 1498828 R 298386 CDS YP_133016.1 54303023 3121392 1500594..1502123 1 NC_006371.1 hypothetical protein 1502123 3121392 PBPRB1345 Photobacterium profundum SS9 hypothetical protein YP_133016.1 1500594 D 298386 CDS YP_133017.1 54303024 3121341 1502083..1503453 1 NC_006371.1 hypothetical protein 1503453 3121341 PBPRB1346 Photobacterium profundum SS9 hypothetical protein YP_133017.1 1502083 D 298386 CDS YP_133018.1 54303025 3121267 complement(1503530..1504606) 1 NC_006371.1 Part of the ABC transporter complex modABC involved in molybdenum import; molybdate transporter ATP-binding protein 1504606 modC 3121267 modC Photobacterium profundum SS9 molybdate transporter ATP-binding protein YP_133018.1 1503530 R 298386 CDS YP_133019.1 54303026 3121325 complement(1504675..1505367) 1 NC_006371.1 part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease protein 1505367 modB 3121325 modB Photobacterium profundum SS9 molybdate ABC transporter permease protein YP_133019.1 1504675 R 298386 CDS YP_133020.1 54303027 3121280 complement(1505406..1506185) 1 NC_006371.1 molybdenum ABC transporter,periplasmic molybdenum-binding protein 1506185 3121280 PBPRB1349 Photobacterium profundum SS9 molybdenum ABC transporter,periplasmic molybdenum-binding protein YP_133020.1 1505406 R 298386 CDS YP_133021.1 54303028 3121377 complement(1506361..1506645) 1 NC_006371.1 hypothetical protein 1506645 3121377 PBPRB1350 Photobacterium profundum SS9 hypothetical protein YP_133021.1 1506361 R 298386 CDS YP_133022.1 54303029 3121479 complement(1506684..1507583) 1 NC_006371.1 transcriptional regulator 1507583 3121479 PBPRB1351 Photobacterium profundum SS9 transcriptional regulator YP_133022.1 1506684 R 298386 CDS YP_133023.1 54303030 3121148 1507971..1509146 1 NC_006371.1 Na(+)/H(+)-dicarboxylate symporter 1509146 3121148 PBPRB1352 Photobacterium profundum SS9 Na(+)/H(+)-dicarboxylate symporter YP_133023.1 1507971 D 298386 CDS YP_133024.1 54303031 3121224 1509252..1510532 1 NC_006371.1 hypothetical protein 1510532 3121224 PBPRB1353 Photobacterium profundum SS9 hypothetical protein YP_133024.1 1509252 D 298386 CDS YP_133025.1 54303032 3121452 1510645..1512321 1 NC_006371.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1512321 3121452 PBPRB1354 Photobacterium profundum SS9 malate dehydrogenase YP_133025.1 1510645 D 298386 CDS YP_133026.1 54303033 3121229 complement(1512465..1513487) 1 NC_006371.1 catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase 1513487 3121229 PBPRB1355 Photobacterium profundum SS9 manganese-dependent inorganic pyrophosphatase YP_133026.1 1512465 R 298386 CDS YP_133027.1 54303034 3121200 complement(1513695..1514666) 1 NC_006371.1 hypothetical protein 1514666 3121200 PBPRB1356 Photobacterium profundum SS9 hypothetical protein YP_133027.1 1513695 R 298386 CDS YP_133028.1 54303035 3121257 1515263..1516543 1 NC_006371.1 hypothetical protein 1516543 3121257 PBPRB1357 Photobacterium profundum SS9 hypothetical protein YP_133028.1 1515263 D 298386 CDS YP_133029.1 54303036 3121213 complement(1516469..1517554) 1 NC_006371.1 IS-element 1517554 3121213 PBPRB1358 Photobacterium profundum SS9 IS-element YP_133029.1 1516469 R 298386 CDS YP_133030.1 54303037 3121482 complement(1518022..1519587) 1 NC_006371.1 hypothetical protein 1519587 3121482 PBPRB1359 Photobacterium profundum SS9 hypothetical protein YP_133030.1 1518022 R 298386 CDS YP_133031.1 54303038 3121131 1519918..1520649 1 NC_006371.1 hypothetical protein 1520649 3121131 PBPRB1360 Photobacterium profundum SS9 hypothetical protein YP_133031.1 1519918 D 298386 CDS YP_133032.1 54303039 3121389 complement(1521104..1521370) 1 NC_006371.1 hypothetical protein 1521370 3121389 PBPRB1364 Photobacterium profundum SS9 hypothetical protein YP_133032.1 1521104 R 298386 CDS YP_133033.1 54303040 3121322 complement(1521385..1522437) 1 NC_006371.1 NADH-dependent flavin oxidoreductase 1522437 3121322 PBPRB1366 Photobacterium profundum SS9 NADH-dependent flavin oxidoreductase YP_133033.1 1521385 R 298386 CDS YP_133034.1 54303041 3121399 1522640..1523176 1 NC_006371.1 TetR family transcriptional regulator 1523176 3121399 PBPRB1367 Photobacterium profundum SS9 TetR family transcriptional regulator YP_133034.1 1522640 D 298386 CDS YP_133035.1 54303042 3121374 complement(1523517..1523780) 1 NC_006371.1 hypothetical protein 1523780 3121374 PBPRB1368 Photobacterium profundum SS9 hypothetical protein YP_133035.1 1523517 R 298386 CDS YP_133036.1 54303043 3121271 1523929..1524501 1 NC_006371.1 hypothetical protein 1524501 3121271 PBPRB1369 Photobacterium profundum SS9 hypothetical protein YP_133036.1 1523929 D 298386 CDS YP_133037.1 54303044 3121459 1524953..1525720 1 NC_006371.1 formate dehydrogenase 1525720 3121459 PBPRB1370 Photobacterium profundum SS9 formate dehydrogenase YP_133037.1 1524953 D 298386 CDS YP_133038.1 54303045 3121284 complement(1526006..1526326) 1 NC_006371.1 hypothetical protein 1526326 3121284 PBPRB1371 Photobacterium profundum SS9 hypothetical protein YP_133038.1 1526006 R 298386 CDS YP_133039.1 54303046 3121315 1526434..1529496 1 NC_006371.1 tetrathionate reductase 1529496 3121315 PBPRB1372 Photobacterium profundum SS9 tetrathionate reductase YP_133039.1 1526434 D 298386 CDS YP_133040.1 54303047 3121441 1530118..1531113 1 NC_006371.1 lipoate-protein ligase A 1531113 3121441 PBPRB1373 Photobacterium profundum SS9 lipoate-protein ligase A YP_133040.1 1530118 D 298386 CDS YP_133041.2 161936346 3121204 1531858..1533099 1 NC_006371.1 cytosine permease 1533099 codB 3121204 codB Photobacterium profundum SS9 cytosine permease YP_133041.2 1531858 D 298386 CDS YP_133042.1 54303049 3121302 1533120..1534409 1 NC_006371.1 Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 1534409 3121302 PBPRB1375 Photobacterium profundum SS9 cytosine deaminase YP_133042.1 1533120 D 298386 CDS YP_133043.1 54303050 3121239 complement(1534552..1535757) 1 NC_006371.1 serine protease 1535757 3121239 PBPRB1376 Photobacterium profundum SS9 serine protease YP_133043.1 1534552 R 298386 CDS YP_133044.1 54303051 3121318 complement(1535981..1536466) 1 NC_006371.1 hypothetical protein 1536466 3121318 PBPRB1377 Photobacterium profundum SS9 hypothetical protein YP_133044.1 1535981 R 298386 CDS YP_133045.1 54303052 3121206 complement(1536508..1537254) 1 NC_006371.1 hypothetical protein 1537254 3121206 PBPRB1378 Photobacterium profundum SS9 hypothetical protein YP_133045.1 1536508 R 298386 CDS YP_133046.1 54303053 3121019 complement(1537714..1538718) 1 NC_006371.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 1538718 3121019 PBPRB1379 Photobacterium profundum SS9 adenosine deaminase YP_133046.1 1537714 R 298386 CDS YP_133047.1 54303054 3121422 complement(1538985..1539245) 1 NC_006371.1 hypothetical protein 1539245 3121422 PBPRB1380 Photobacterium profundum SS9 hypothetical protein YP_133047.1 1538985 R 298386 CDS YP_133048.1 54303055 3121407 1539558..1540106 1 NC_006371.1 hypothetical protein 1540106 3121407 PBPRB1381 Photobacterium profundum SS9 hypothetical protein YP_133048.1 1539558 D 298386 CDS YP_133049.1 54303056 3121396 1540116..1540340 1 NC_006371.1 transcriptional regulator 1540340 3121396 PBPRB1382 Photobacterium profundum SS9 transcriptional regulator YP_133049.1 1540116 D 298386 CDS YP_133050.1 54303057 3121395 complement(1540390..1541586) 1 NC_006371.1 hypothetical protein 1541586 3121395 PBPRB1383 Photobacterium profundum SS9 hypothetical protein YP_133050.1 1540390 R 298386 CDS YP_133051.1 54303058 3121379 complement(1541842..1542630) 1 NC_006371.1 iron/siderophore ABC transporter ATP-binding protein 1542630 3121379 PBPRB1384 Photobacterium profundum SS9 iron/siderophore ABC transporter ATP-binding protein YP_133051.1 1541842 R 298386 CDS YP_133052.1 54303059 3121353 complement(1542769..1543146) 1 NC_006371.1 iron ABC transporter 1543146 3121353 PBPRB1385 Photobacterium profundum SS9 iron ABC transporter YP_133052.1 1542769 R 298386 CDS YP_133053.1 54303060 3121336 1543654..1544868 1 NC_006371.1 (Fe-S)-binding protein 1544868 3121336 PBPRB1386 Photobacterium profundum SS9 (Fe-S)-binding protein YP_133053.1 1543654 D 298386 CDS YP_133054.1 54303061 3121308 complement(1545028..1546047) 1 NC_006371.1 transposase 1546047 3121308 PBPRB1387 Photobacterium profundum SS9 transposase YP_133054.1 1545028 R 298386 CDS YP_133055.1 54303062 3121282 complement(1546080..1546601) 1 NC_006371.1 transposase 1546601 3121282 PBPRB1388 Photobacterium profundum SS9 transposase YP_133055.1 1546080 R 298386 CDS YP_133056.1 54303063 3121258 complement(1546839..1547102) 1 NC_006371.1 hypothetical protein 1547102 3121258 PBPRB1389 Photobacterium profundum SS9 hypothetical protein YP_133056.1 1546839 R 298386 CDS YP_133057.1 54303064 3121187 complement(1547113..1547442) 1 NC_006371.1 hypothetical protein 1547442 3121187 PBPRB1390 Photobacterium profundum SS9 hypothetical protein YP_133057.1 1547113 R 298386 CDS YP_133058.1 54303065 3121193 complement(1548548..1549294) 1 NC_006371.1 transposase 1549294 3121193 PBPRB1391 Photobacterium profundum SS9 transposase YP_133058.1 1548548 R 298386 CDS YP_133059.1 54303066 3121197 1549490..1550395 1 NC_006371.1 hypothetical protein 1550395 3121197 PBPRB1392 Photobacterium profundum SS9 hypothetical protein YP_133059.1 1549490 D 298386 CDS YP_133060.1 54303067 3121184 complement(1550470..1550850) 1 NC_006371.1 hypothetical protein 1550850 3121184 PBPRB1393 Photobacterium profundum SS9 hypothetical protein YP_133060.1 1550470 R 298386 CDS YP_133061.1 54303068 3121221 complement(1550981..1551406) 1 NC_006371.1 hypothetical protein 1551406 3121221 PBPRB1394 Photobacterium profundum SS9 hypothetical protein YP_133061.1 1550981 R 298386 CDS YP_133062.1 54303069 3121217 complement(1551408..1551836) 1 NC_006371.1 hypothetical protein 1551836 3121217 PBPRB1395 Photobacterium profundum SS9 hypothetical protein YP_133062.1 1551408 R 298386 CDS YP_133063.1 54303070 3121152 1552885..1553772 1 NC_006371.1 hypothetical protein 1553772 3121152 PBPRB1396 Photobacterium profundum SS9 hypothetical protein YP_133063.1 1552885 D 298386 CDS YP_133064.1 54303071 3121220 1553769..1554821 1 NC_006371.1 transposase 1554821 3121220 PBPRB1397 Photobacterium profundum SS9 transposase YP_133064.1 1553769 D 298386 CDS YP_133065.1 54303072 3121216 complement(1555381..1555704) 1 NC_006371.1 hypothetical protein 1555704 3121216 PBPRB1398 Photobacterium profundum SS9 hypothetical protein YP_133065.1 1555381 R 298386 CDS YP_133066.1 54303073 3121207 complement(1555945..1556472) 1 NC_006371.1 hypothetical protein 1556472 3121207 PBPRB1399 Photobacterium profundum SS9 hypothetical protein YP_133066.1 1555945 R 298386 CDS YP_133067.1 54303074 3121203 complement(1556872..1557264) 1 NC_006371.1 hypothetical protein 1557264 3121203 PBPRB1400 Photobacterium profundum SS9 hypothetical protein YP_133067.1 1556872 R 298386 CDS YP_133068.1 54303075 3121198 complement(1557258..1557557) 1 NC_006371.1 hypothetical protein 1557557 3121198 PBPRB1401 Photobacterium profundum SS9 hypothetical protein YP_133068.1 1557258 R 298386 CDS YP_133069.1 54303076 3121156 1558196..1558573 1 NC_006371.1 hypothetical protein 1558573 3121156 PBPRB1402 Photobacterium profundum SS9 hypothetical protein YP_133069.1 1558196 D 298386 CDS YP_133070.1 54303077 3121059 complement(1558667..1560004) 1 NC_006371.1 hypothetical protein 1560004 3121059 PBPRB1403 Photobacterium profundum SS9 hypothetical protein YP_133070.1 1558667 R 298386 CDS YP_133071.1 54303078 3120763 complement(1560176..1560649) 1 NC_006371.1 hypothetical protein 1560649 3120763 PBPRB1404 Photobacterium profundum SS9 hypothetical protein YP_133071.1 1560176 R 298386 CDS YP_133072.1 54303079 3121007 complement(1560653..1560943) 1 NC_006371.1 DNA-binding protein 1560943 3121007 PBPRB1405 Photobacterium profundum SS9 DNA-binding protein YP_133072.1 1560653 R 298386 CDS YP_133073.1 54303080 3121165 complement(1561194..1563005) 1 NC_006371.1 ATP-binding/permease fusionABC transporter 1563005 3121165 PBPRB1406 Photobacterium profundum SS9 ATP-binding/permease fusionABC transporter YP_133073.1 1561194 R 298386 CDS YP_133074.1 54303081 3121139 complement(1563235..1564632) 1 NC_006371.1 nuclease 1564632 3121139 PBPRB1407 Photobacterium profundum SS9 nuclease YP_133074.1 1563235 R 298386 CDS YP_133075.1 54303082 3121164 complement(1564923..1566254) 1 NC_006371.1 catalyzes the formation of pyruvate from serine; D-serine dehydratase 1566254 3121164 PBPRB1408 Photobacterium profundum SS9 D-serine dehydratase YP_133075.1 1564923 R 298386 CDS YP_133076.1 54303083 3121150 complement(1566270..1566917) 1 NC_006371.1 DsdX permease 1566917 3121150 PBPRB1409 Photobacterium profundum SS9 DsdX permease YP_133076.1 1566270 R 298386 CDS YP_133077.1 54303084 3121132 1567369..1568406 1 NC_006371.1 transposase 1568406 3121132 PBPRB1410 Photobacterium profundum SS9 transposase YP_133077.1 1567369 D 298386 CDS YP_133078.1 54303085 3121133 1568454..1568819 1 NC_006371.1 hypothetical protein 1568819 3121133 PBPRB1411 Photobacterium profundum SS9 hypothetical protein YP_133078.1 1568454 D 298386 CDS YP_133079.1 54303086 3121134 1568984..1570060 1 NC_006371.1 glucose dehydrogenase 1570060 3121134 PBPRB1412 Photobacterium profundum SS9 glucose dehydrogenase YP_133079.1 1568984 D 298386 CDS YP_133080.1 54303087 3121146 complement(1570159..1571271) 1 NC_006371.1 NADH-dependent flavin oxidoreductase 1571271 3121146 PBPRB1413 Photobacterium profundum SS9 NADH-dependent flavin oxidoreductase YP_133080.1 1570159 R 298386 CDS YP_133081.1 54303088 3120877 complement(1571507..1571872) 1 NC_006371.1 hypothetical protein 1571872 3120877 PBPRB1414 Photobacterium profundum SS9 hypothetical protein YP_133081.1 1571507 R 298386 CDS YP_133082.1 54303089 3121136 1572173..1573441 1 NC_006371.1 homocysteine synthase 1573441 3121136 PBPRB1415 Photobacterium profundum SS9 homocysteine synthase YP_133082.1 1572173 D 298386 CDS YP_133083.1 54303090 3121179 complement(1573586..1574764) 1 NC_006371.1 hypothetical protein 1574764 3121179 PBPRB1416 Photobacterium profundum SS9 hypothetical protein YP_133083.1 1573586 R 298386 CDS YP_133084.1 54303091 3121181 1575477..1576445 1 NC_006371.1 inosine-uridine preferring nucleoside hydrolase 1576445 3121181 PBPRB1417 Photobacterium profundum SS9 inosine-uridine preferring nucleoside hydrolase YP_133084.1 1575477 D 298386 CDS YP_133085.1 54303092 3121168 complement(1576504..1577355) 1 NC_006371.1 transcriptional regulator 1577355 3121168 PBPRB1418 Photobacterium profundum SS9 transcriptional regulator YP_133085.1 1576504 R 298386 CDS YP_133086.1 54303093 3121169 1577479..1577901 1 NC_006371.1 hypothetical protein 1577901 3121169 PBPRB1419 Photobacterium profundum SS9 hypothetical protein YP_133086.1 1577479 D 298386 CDS YP_133087.1 54303094 3121153 1577955..1578470 1 NC_006371.1 hypothetical protein 1578470 3121153 PBPRB1420 Photobacterium profundum SS9 hypothetical protein YP_133087.1 1577955 D 298386 CDS YP_133088.1 54303095 3121163 complement(1578641..1579627) 1 NC_006371.1 arginase 1579627 3121163 PBPRB1421 Photobacterium profundum SS9 arginase YP_133088.1 1578641 R 298386 CDS YP_133089.1 54303096 3120800 complement(1579658..1580233) 1 NC_006371.1 transcriptional regulator 1580233 3120800 PBPRB1422 Photobacterium profundum SS9 transcriptional regulator YP_133089.1 1579658 R 298386 CDS YP_133090.1 54303097 3121151 complement(1580304..1580651) 1 NC_006371.1 transposase 1580651 3121151 PBPRB1423 Photobacterium profundum SS9 transposase YP_133090.1 1580304 R 298386 CDS YP_133091.1 54303098 3121093 1581334..1581723 1 NC_006371.1 hypothetical protein 1581723 3121093 PBPRB1424 Photobacterium profundum SS9 hypothetical protein YP_133091.1 1581334 D 298386 CDS YP_133092.1 54303099 3121173 1581955..1582716 1 NC_006371.1 hypothetical protein 1582716 3121173 PBPRB1425 Photobacterium profundum SS9 hypothetical protein YP_133092.1 1581955 D 298386 CDS YP_133093.1 54303100 3121161 1582842..1583168 1 NC_006371.1 hypothetical protein 1583168 3121161 PBPRB1426 Photobacterium profundum SS9 hypothetical protein YP_133093.1 1582842 D 298386 CDS YP_133094.1 54303101 3121159 complement(1583189..1583650) 1 NC_006371.1 transcriptional regulator 1583650 3121159 PBPRB1427 Photobacterium profundum SS9 transcriptional regulator YP_133094.1 1583189 R 298386 CDS YP_133095.1 54303102 3121135 complement(1583941..1584966) 1 NC_006371.1 hypothetical protein 1584966 3121135 PBPRB1428 Photobacterium profundum SS9 hypothetical protein YP_133095.1 1583941 R 298386 CDS YP_133096.1 54303103 3121160 complement(1585008..1585943) 1 NC_006371.1 multidrug resistance efflux pump 1585943 3121160 PBPRB1429 Photobacterium profundum SS9 multidrug resistance efflux pump YP_133096.1 1585008 R 298386 CDS YP_133097.1 54303104 3121137 complement(1586338..1587231) 1 NC_006371.1 transcriptional regulator 1587231 3121137 PBPRB1430 Photobacterium profundum SS9 transcriptional regulator YP_133097.1 1586338 R 298386 CDS YP_133098.1 54303105 3121109 complement(1587265..1588161) 1 NC_006371.1 transcriptional regulator 1588161 3121109 PBPRB1431 Photobacterium profundum SS9 transcriptional regulator YP_133098.1 1587265 R 298386 CDS YP_133099.1 54303106 3121051 1588327..1588677 1 NC_006371.1 hypothetical protein 1588677 3121051 PBPRB1432 Photobacterium profundum SS9 hypothetical protein YP_133099.1 1588327 D 298386 CDS YP_133100.1 54303107 3121106 1588682..1589053 1 NC_006371.1 hypothetical protein 1589053 3121106 PBPRB1433 Photobacterium profundum SS9 hypothetical protein YP_133100.1 1588682 D 298386 CDS YP_133101.1 54303108 3120937 1589313..1589813 1 NC_006371.1 hypothetical protein 1589813 3120937 PBPRB1434 Photobacterium profundum SS9 hypothetical protein YP_133101.1 1589313 D 298386 CDS YP_133102.1 54303109 3120982 complement(1590922..1591470) 1 NC_006371.1 hypothetical protein 1591470 3120982 PBPRB1436 Photobacterium profundum SS9 hypothetical protein YP_133102.1 1590922 R 298386 CDS YP_133103.1 54303110 3120782 complement(1591997..1592362) 1 NC_006371.1 hypothetical protein 1592362 3120782 PBPRB1437 Photobacterium profundum SS9 hypothetical protein YP_133103.1 1591997 R 298386 CDS YP_133104.1 54303111 3120721 complement(1592388..1592750) 1 NC_006371.1 hypothetical protein 1592750 3120721 PBPRB1438 Photobacterium profundum SS9 hypothetical protein YP_133104.1 1592388 R 298386 CDS YP_133105.1 54303112 3120682 complement(1593335..1594897) 1 NC_006371.1 hypothetical protein 1594897 3120682 PBPRB1439 Photobacterium profundum SS9 hypothetical protein YP_133105.1 1593335 R 298386 CDS YP_133106.1 54303113 3120781 complement(1594894..1595574) 1 NC_006371.1 hypothetical protein 1595574 3120781 PBPRB1440 Photobacterium profundum SS9 hypothetical protein YP_133106.1 1594894 R 298386 CDS YP_133107.1 54303114 3120720 complement(1595961..1596743) 1 NC_006371.1 hypothetical protein 1596743 3120720 PBPRB1441 Photobacterium profundum SS9 hypothetical protein YP_133107.1 1595961 R 298386 CDS YP_133108.1 54303115 3120801 complement(1596733..1597008) 1 NC_006371.1 hypothetical protein 1597008 3120801 PBPRB1442 Photobacterium profundum SS9 hypothetical protein YP_133108.1 1596733 R 298386 CDS YP_133109.1 54303116 3120846 complement(1597024..1597554) 1 NC_006371.1 hypothetical protein 1597554 3120846 PBPRB1443 Photobacterium profundum SS9 hypothetical protein YP_133109.1 1597024 R 298386 CDS YP_133110.1 54303117 3120443 complement(1597551..1598309) 1 NC_006371.1 hypothetical protein 1598309 3120443 PBPRB1444 Photobacterium profundum SS9 hypothetical protein YP_133110.1 1597551 R 298386 CDS YP_133111.1 54303118 3120822 complement(1598561..1598908) 1 NC_006371.1 transposase 1598908 3120822 PBPRB1445 Photobacterium profundum SS9 transposase YP_133111.1 1598561 R 298386 CDS YP_133112.1 54303119 3120938 1599131..1599601 1 NC_006371.1 transposase 1599601 3120938 PBPRB1446 Photobacterium profundum SS9 transposase YP_133112.1 1599131 D 298386 CDS YP_133113.1 54303120 3120832 1599603..1600166 1 NC_006371.1 transposase and inactivated derivative 1600166 3120832 PBPRB1447 Photobacterium profundum SS9 transposase and inactivated derivative YP_133113.1 1599603 D 298386 CDS YP_133114.1 54303121 3120974 complement(1603332..1603655) 1 NC_006371.1 transposase 1603655 3120974 PBPRB1448 Photobacterium profundum SS9 transposase YP_133114.1 1603332 R 298386 CDS YP_133115.1 54303122 3120401 complement(1603682..1604179) 1 NC_006371.1 transposase 1604179 3120401 PBPRB1449 Photobacterium profundum SS9 transposase YP_133115.1 1603682 R 298386 CDS YP_133116.1 54303123 3120774 complement(1604188..1604706) 1 NC_006371.1 transposase 1604706 3120774 PBPRB1450 Photobacterium profundum SS9 transposase YP_133116.1 1604188 R 298386 CDS YP_133117.1 54303124 3120778 complement(1604739..1605260) 1 NC_006371.1 hypothetical protein 1605260 3120778 PBPRB1451 Photobacterium profundum SS9 hypothetical protein YP_133117.1 1604739 R 298386 CDS YP_133118.1 54303125 3120754 complement(1605282..1606160) 1 NC_006371.1 transposase 1606160 3120754 PBPRB1452 Photobacterium profundum SS9 transposase YP_133118.1 1605282 R 298386 CDS YP_133119.1 54303126 3120943 complement(1606940..1608550) 1 NC_006371.1 hypothetical protein 1608550 3120943 PBPRB1453 Photobacterium profundum SS9 hypothetical protein YP_133119.1 1606940 R 298386 CDS YP_133120.1 54303127 3120871 1608835..1609872 1 NC_006371.1 hypothetical protein 1609872 3120871 PBPRB1454 Photobacterium profundum SS9 hypothetical protein YP_133120.1 1608835 D 298386 CDS YP_133121.1 54303128 3120942 1609879..1610676 1 NC_006371.1 transposase 1610676 3120942 PBPRB1455 Photobacterium profundum SS9 transposase YP_133121.1 1609879 D 298386 CDS YP_133122.1 54303129 3121034 1610874..1611395 1 NC_006371.1 transposase 1611395 3121034 PBPRB1456 Photobacterium profundum SS9 transposase YP_133122.1 1610874 D 298386 CDS YP_133123.1 54303130 3121070 1611428..1612447 1 NC_006371.1 transposase 1612447 3121070 PBPRB1457 Photobacterium profundum SS9 transposase YP_133123.1 1611428 D 298386 CDS YP_133124.1 54303131 3121058 complement(1612759..1613967) 1 NC_006371.1 NupC family protein (permease) 1613967 3121058 PBPRB1458 Photobacterium profundum SS9 NupC family protein (permease) YP_133124.1 1612759 R 298386 CDS YP_133125.1 54303132 3121037 complement(1614226..1614480) 1 NC_006371.1 hypothetical protein 1614480 3121037 PBPRB1459 Photobacterium profundum SS9 hypothetical protein YP_133125.1 1614226 R 298386 CDS YP_133126.1 54303133 3120933 complement(1614503..1615012) 1 NC_006371.1 hypothetical protein 1615012 3120933 PBPRB1460 Photobacterium profundum SS9 hypothetical protein YP_133126.1 1614503 R 298386 CDS YP_133127.1 54303134 3120955 complement(1615462..1616514) 1 NC_006371.1 GTP cyclohydrolase II 1616514 3120955 PBPRB1461 Photobacterium profundum SS9 GTP cyclohydrolase II YP_133127.1 1615462 R 298386 CDS YP_133128.1 54303135 3121004 1616773..1617456 1 NC_006371.1 manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase 1617456 3121004 PBPRB1462 Photobacterium profundum SS9 nucleotidase YP_133128.1 1616773 D 298386 CDS YP_133129.1 54303136 3121021 1617848..1619143 1 NC_006371.1 branched chain amino acid transporter 1619143 3121021 PBPRB1463 Photobacterium profundum SS9 branched chain amino acid transporter YP_133129.1 1617848 D 298386 CDS YP_133130.1 54303137 3120775 1619589..1620896 1 NC_006371.1 branched chain amino acid transporter 1620896 3120775 PBPRB1464 Photobacterium profundum SS9 branched chain amino acid transporter YP_133130.1 1619589 D 298386 CDS YP_133131.1 54303138 3121035 1621477..1621773 1 NC_006371.1 hypothetical protein 1621773 3121035 PBPRB1465 Photobacterium profundum SS9 hypothetical protein YP_133131.1 1621477 D 298386 CDS YP_133132.1 54303139 3120726 complement(1621843..1622184) 1 NC_006371.1 hypothetical protein 1622184 3120726 PBPRB1466 Photobacterium profundum SS9 hypothetical protein YP_133132.1 1621843 R 298386 CDS YP_133133.1 54303140 3120902 1622429..1623571 1 NC_006371.1 methyl-accepting chemotaxis protein 1623571 3120902 PBPRB1467 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_133133.1 1622429 D 298386 CDS YP_133134.1 54303141 3121123 complement(1623590..1625134) 1 NC_006371.1 transposase 1625134 3121123 PBPRB1468 Photobacterium profundum SS9 transposase YP_133134.1 1623590 R 298386 CDS YP_133135.1 54303142 3121085 complement(1625243..1625590) 1 NC_006371.1 ISPpu15 transposase 1625590 3121085 PBPRB1469 Photobacterium profundum SS9 ISPpu15 transposase YP_133135.1 1625243 R 298386 CDS YP_133136.1 54303143 3120780 1626754..1627050 1 NC_006371.1 hypothetical protein 1627050 3120780 PBPRB1470 Photobacterium profundum SS9 hypothetical protein YP_133136.1 1626754 D 298386 CDS YP_133137.1 54303144 3120732 complement(1627125..1627379) 1 NC_006371.1 hypothetical protein 1627379 3120732 PBPRB1471 Photobacterium profundum SS9 hypothetical protein YP_133137.1 1627125 R 298386 CDS YP_133138.1 54303145 3121001 complement(1627518..1628540) 1 NC_006371.1 hypothetical protein 1628540 3121001 PBPRB1472 Photobacterium profundum SS9 hypothetical protein YP_133138.1 1627518 R 298386 CDS YP_133139.1 54303146 3120835 complement(1628661..1629467) 1 NC_006371.1 hypothetical protein 1629467 3120835 PBPRB1473 Photobacterium profundum SS9 hypothetical protein YP_133139.1 1628661 R 298386 CDS YP_133140.1 54303147 3120776 complement(1629716..1630804) 1 NC_006371.1 hypothetical protein 1630804 3120776 PBPRB1474 Photobacterium profundum SS9 hypothetical protein YP_133140.1 1629716 R 298386 CDS YP_133141.1 54303148 3120714 complement(1631241..1632428) 1 NC_006371.1 hypothetical protein 1632428 3120714 PBPRB1475 Photobacterium profundum SS9 hypothetical protein YP_133141.1 1631241 R 298386 CDS YP_133142.1 54303149 3121066 1632516..1632902 1 NC_006371.1 hypothetical protein 1632902 3121066 PBPRB1476 Photobacterium profundum SS9 hypothetical protein YP_133142.1 1632516 D 298386 CDS YP_133143.1 54303150 3121128 1633072..1633416 1 NC_006371.1 hypothetical protein 1633416 3121128 PBPRB1477 Photobacterium profundum SS9 hypothetical protein YP_133143.1 1633072 D 298386 CDS YP_133144.1 54303151 3120987 complement(1633661..1635643) 1 NC_006371.1 hypothetical protein 1635643 3120987 PBPRB1478 Photobacterium profundum SS9 hypothetical protein YP_133144.1 1633661 R 298386 CDS YP_133145.1 54303152 3120884 complement(1635627..1636667) 1 NC_006371.1 The second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 1636667 3120884 PBPRB1479 Photobacterium profundum SS9 glutathione synthetase YP_133145.1 1635627 R 298386 CDS YP_133146.1 54303153 3121036 complement(1636779..1637129) 1 NC_006371.1 hypothetical protein 1637129 3121036 PBPRB1480 Photobacterium profundum SS9 hypothetical protein YP_133146.1 1636779 R 298386 CDS YP_133147.1 54303154 3120806 1637295..1638155 1 NC_006371.1 LysR family transcriptional regulator 1638155 3120806 PBPRB1481 Photobacterium profundum SS9 LysR family transcriptional regulator YP_133147.1 1637295 D 298386 CDS YP_133148.1 54303155 3120818 1638818..1639114 1 NC_006371.1 hypothetical protein 1639114 3120818 PBPRB1482 Photobacterium profundum SS9 hypothetical protein YP_133148.1 1638818 D 298386 CDS YP_133149.1 54303156 3120823 1639114..1639461 1 NC_006371.1 ISPpu15 transposase 1639461 3120823 PBPRB1483 Photobacterium profundum SS9 ISPpu15 transposase YP_133149.1 1639114 D 298386 CDS YP_133150.1 54303157 3120745 1640139..1641110 1 NC_006371.1 ISPpu15 transposase 1641110 3120745 PBPRB1484 Photobacterium profundum SS9 ISPpu15 transposase YP_133150.1 1640139 D 298386 CDS YP_133151.1 54303158 3120892 complement(1641107..1642225) 1 NC_006371.1 Tn5 trasposase 1642225 3120892 PBPRB1485 Photobacterium profundum SS9 Tn5 trasposase YP_133151.1 1641107 R 298386 CDS YP_133152.1 54303159 3121107 complement(1642219..1642500) 1 NC_006371.1 hypothetical protein 1642500 3121107 PBPRB1486 Photobacterium profundum SS9 hypothetical protein YP_133152.1 1642219 R 298386 CDS YP_133153.1 54303160 3120713 1642657..1643286 1 NC_006371.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; aspartate kinase 1643286 3120713 PBPRB1487 Photobacterium profundum SS9 aspartate kinase YP_133153.1 1642657 D 298386 CDS YP_133154.1 54303161 3120829 complement(1643253..1644290) 1 NC_006371.1 hypothetical protein 1644290 3120829 PBPRB1488 Photobacterium profundum SS9 hypothetical protein YP_133154.1 1643253 R 298386 CDS YP_133155.1 54303162 3121104 1644300..1644671 1 NC_006371.1 hypothetical protein 1644671 3121104 PBPRB1489 Photobacterium profundum SS9 hypothetical protein YP_133155.1 1644300 D 298386 CDS YP_133156.1 54303163 3120947 1645264..1645632 1 NC_006371.1 hypothetical protein 1645632 3120947 PBPRB1490 Photobacterium profundum SS9 hypothetical protein YP_133156.1 1645264 D 298386 CDS YP_133157.1 54303164 3120994 1645965..1648100 1 NC_006371.1 suppressor for copper-sensitivity B precursor 1648100 3120994 PBPRB1491 Photobacterium profundum SS9 suppressor for copper-sensitivity B precursor YP_133157.1 1645965 D 298386 CDS YP_133158.1 54303165 3121124 1648036..1648680 1 NC_006371.1 thioredoxin 1648680 3121124 PBPRB1492 Photobacterium profundum SS9 thioredoxin YP_133158.1 1648036 D 298386 CDS YP_133159.1 54303166 3120996 complement(1648811..1649329) 1 NC_006371.1 hypothetical protein 1649329 3120996 PBPRB1493 Photobacterium profundum SS9 hypothetical protein YP_133159.1 1648811 R 298386 CDS YP_133160.1 54303167 3120756 complement(1649504..1650010) 1 NC_006371.1 lipoprotein NlpC 1650010 3120756 PBPRB1494 Photobacterium profundum SS9 lipoprotein NlpC YP_133160.1 1649504 R 298386 CDS YP_133161.1 54303168 3120881 1650230..1650628 1 NC_006371.1 hypothetical protein 1650628 3120881 PBPRB1495 Photobacterium profundum SS9 hypothetical protein YP_133161.1 1650230 D 298386 CDS YP_133162.1 54303169 3120887 1651113..1651862 1 NC_006371.1 1-acyl-sn-glycerol-3-phosphate acyltransferase 1651862 3120887 PBPRB1496 Photobacterium profundum SS9 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_133162.1 1651113 D 298386 CDS YP_133163.1 54303170 3120911 complement(1652095..1652547) 1 NC_006371.1 hypothetical protein 1652547 3120911 PBPRB1497 Photobacterium profundum SS9 hypothetical protein YP_133163.1 1652095 R 298386 CDS YP_133164.1 54303171 3120898 complement(1652555..1652971) 1 NC_006371.1 hypothetical protein 1652971 3120898 PBPRB1498 Photobacterium profundum SS9 hypothetical protein YP_133164.1 1652555 R 298386 CDS YP_133165.1 54303172 3121078 complement(1653328..1653678) 1 NC_006371.1 hypothetical protein 1653678 3121078 PBPRB1499 Photobacterium profundum SS9 hypothetical protein YP_133165.1 1653328 R 298386 CDS YP_133166.1 54303173 3121003 complement(1653829..1654128) 1 NC_006371.1 hypothetical protein 1654128 3121003 PBPRB1500 Photobacterium profundum SS9 hypothetical protein YP_133166.1 1653829 R 298386 CDS YP_133167.1 54303174 3120972 complement(1654307..1654660) 1 NC_006371.1 hypothetical protein 1654660 3120972 PBPRB1501 Photobacterium profundum SS9 hypothetical protein YP_133167.1 1654307 R 298386 CDS YP_133168.1 54303175 3120981 1655024..1655626 1 NC_006371.1 hypothetical protein 1655626 3120981 PBPRB1502 Photobacterium profundum SS9 hypothetical protein YP_133168.1 1655024 D 298386 CDS YP_133169.1 54303176 3120948 1655779..1656681 1 NC_006371.1 hypothetical protein 1656681 3120948 PBPRB1503 Photobacterium profundum SS9 hypothetical protein YP_133169.1 1655779 D 298386 CDS YP_133170.1 54303177 3121096 1656706..1657056 1 NC_006371.1 hypothetical protein 1657056 3121096 PBPRB1504 Photobacterium profundum SS9 hypothetical protein YP_133170.1 1656706 D 298386 CDS YP_133171.1 54303178 3121050 complement(1657072..1657503) 1 NC_006371.1 SoxR protein 1657503 3121050 PBPRB1505 Photobacterium profundum SS9 SoxR protein YP_133171.1 1657072 R 298386 CDS YP_133172.1 54303179 3120852 1657592..1658791 1 NC_006371.1 hypothetical protein 1658791 3120852 PBPRB1506 Photobacterium profundum SS9 hypothetical protein YP_133172.1 1657592 D 298386 CDS YP_133173.1 54303180 3121082 complement(1658807..1659136) 1 NC_006371.1 hypothetical protein 1659136 3121082 PBPRB1507 Photobacterium profundum SS9 hypothetical protein YP_133173.1 1658807 R 298386 CDS YP_133174.1 54303181 3120753 complement(1659153..1659473) 1 NC_006371.1 hypothetical protein 1659473 3120753 PBPRB1508 Photobacterium profundum SS9 hypothetical protein YP_133174.1 1659153 R 298386 CDS YP_133175.1 54303182 3120874 1659796..1660917 1 NC_006371.1 hypothetical protein 1660917 3120874 PBPRB1509 Photobacterium profundum SS9 hypothetical protein YP_133175.1 1659796 D 298386 CDS YP_133176.1 54303183 3120722 complement(1661046..1661699) 1 NC_006371.1 exu regulon transcriptional regulator 1661699 3120722 PBPRB1510 Photobacterium profundum SS9 exu regulon transcriptional regulator YP_133176.1 1661046 R 298386 CDS YP_133177.1 54303184 3120870 complement(1662006..1662773) 1 NC_006371.1 dicarboxylate-binding periplasmic protein 1662773 3120870 PBPRB1511 Photobacterium profundum SS9 dicarboxylate-binding periplasmic protein YP_133177.1 1662006 R 298386 CDS YP_133178.1 54303185 3120899 complement(1663007..1664071) 1 NC_006371.1 TRAP-type C4-dicarboxylate transport system, large permease component 1664071 3120899 PBPRB1512 Photobacterium profundum SS9 TRAP-type C4-dicarboxylate transport system, large permease component YP_133178.1 1663007 R 298386 CDS YP_133179.1 54303186 3120845 complement(1664091..1664366) 1 NC_006371.1 hypothetical protein 1664366 3120845 PBPRB1513 Photobacterium profundum SS9 hypothetical protein YP_133179.1 1664091 R 298386 CDS YP_133180.1 54303187 3120882 complement(1664366..1664884) 1 NC_006371.1 TRAP-type C4-dicarboxylate transport system, small permease component 1664884 3120882 PBPRB1514 Photobacterium profundum SS9 TRAP-type C4-dicarboxylate transport system, small permease component YP_133180.1 1664366 R 298386 CDS YP_133181.1 54303188 3120906 1665640..1666863 1 NC_006371.1 catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; uronate isomerase 1666863 3120906 PBPRB1515 Photobacterium profundum SS9 uronate isomerase YP_133181.1 1665640 D 298386 CDS YP_133182.1 54303189 3120816 1666863..1668320 1 NC_006371.1 catalyzes the formation of D-tagaturonate from D-altronate; altronate oxidoreductase 1668320 3120816 PBPRB1516 Photobacterium profundum SS9 altronate oxidoreductase YP_133182.1 1666863 D 298386 CDS YP_133183.1 54303190 3120900 1668313..1669812 1 NC_006371.1 altronate hydrolase, uxaA 1669812 3120900 PBPRB1517 Photobacterium profundum SS9 altronate hydrolase, uxaA YP_133183.1 1668313 D 298386 CDS YP_133184.1 54303191 3120853 1670230..1671018 1 NC_006371.1 hypothetical protein 1671018 3120853 PBPRB1518 Photobacterium profundum SS9 hypothetical protein YP_133184.1 1670230 D 298386 CDS YP_133185.1 54303192 3120742 1672295..1673332 1 NC_006371.1 transposase 1673332 3120742 PBPRB1522 Photobacterium profundum SS9 transposase YP_133185.1 1672295 D 298386 CDS YP_133186.1 54303193 3120867 complement(1673361..1674557) 1 NC_006371.1 hypothetical protein 1674557 3120867 PBPRB1523 Photobacterium profundum SS9 hypothetical protein YP_133186.1 1673361 R 298386 CDS YP_133187.1 54303194 3120838 1674735..1675034 1 NC_006371.1 hypothetical protein 1675034 3120838 PBPRB1524 Photobacterium profundum SS9 hypothetical protein YP_133187.1 1674735 D 298386 CDS YP_133188.1 54303195 3120817 1675368..1676318 1 NC_006371.1 transposase 1676318 3120817 PBPRB1525 Photobacterium profundum SS9 transposase YP_133188.1 1675368 D 298386 CDS YP_133189.1 54303196 3120792 1676730..1677482 1 NC_006371.1 transcriptional regulator 1677482 3120792 PBPRB1526 Photobacterium profundum SS9 transcriptional regulator YP_133189.1 1676730 D 298386 CDS YP_133190.1 54303197 3121125 1677521..1678306 1 NC_006371.1 hypothetical protein 1678306 3121125 PBPRB1527 Photobacterium profundum SS9 hypothetical protein YP_133190.1 1677521 D 298386 CDS YP_133191.1 54303198 3120905 1678316..1679494 1 NC_006371.1 hypothetical protein 1679494 3120905 PBPRB1528 Photobacterium profundum SS9 hypothetical protein YP_133191.1 1678316 D 298386 CDS YP_133192.1 54303199 3121140 1679515..1679796 1 NC_006371.1 hypothetical protein 1679796 3121140 PBPRB1529 Photobacterium profundum SS9 hypothetical protein YP_133192.1 1679515 D 298386 CDS YP_133193.1 54303200 3121079 1679956..1680303 1 NC_006371.1 transposase 1680303 3121079 PBPRB1530 Photobacterium profundum SS9 transposase YP_133193.1 1679956 D 298386 CDS YP_133194.1 54303201 3121005 1680835..1681602 1 NC_006371.1 short chain dehydrogenase/reductase family oxidoreductase 1681602 3121005 PBPRB1531 Photobacterium profundum SS9 short chain dehydrogenase/reductase family oxidoreductase YP_133194.1 1680835 D 298386 CDS YP_133195.1 54303202 3120839 1681615..1682529 1 NC_006371.1 hypothetical protein 1682529 3120839 PBPRB1532 Photobacterium profundum SS9 hypothetical protein YP_133195.1 1681615 D 298386 CDS YP_133196.1 54303203 3120986 1682535..1684844 1 NC_006371.1 hypothetical protein 1684844 3120986 PBPRB1533 Photobacterium profundum SS9 hypothetical protein YP_133196.1 1682535 D 298386 CDS YP_133197.1 54303204 3120755 1685019..1685306 1 NC_006371.1 hypothetical protein 1685306 3120755 PBPRB1534 Photobacterium profundum SS9 hypothetical protein YP_133197.1 1685019 D 298386 CDS YP_133198.1 54303205 3120844 1685645..1686130 1 NC_006371.1 acetyltransferase 1686130 3120844 PBPRB1535 Photobacterium profundum SS9 acetyltransferase YP_133198.1 1685645 D 298386 CDS YP_133199.1 54303206 3121087 complement(1686384..1687247) 1 NC_006371.1 hypothetical protein 1687247 3121087 PBPRB1536 Photobacterium profundum SS9 hypothetical protein YP_133199.1 1686384 R 298386 CDS YP_133200.1 54303207 3120699 complement(1687269..1687856) 1 NC_006371.1 hypothetical protein 1687856 3120699 PBPRB1537 Photobacterium profundum SS9 hypothetical protein YP_133200.1 1687269 R 298386 CDS YP_133201.1 54303208 3121048 1688103..1688567 1 NC_006371.1 hypothetical protein 1688567 3121048 PBPRB1538 Photobacterium profundum SS9 hypothetical protein YP_133201.1 1688103 D 298386 CDS YP_133202.1 54303209 3120863 complement(1688615..1690339) 1 NC_006371.1 selenocysteine-specific translation elongation factor 1690339 3120863 PBPRB1539 Photobacterium profundum SS9 selenocysteine-specific translation elongation factor YP_133202.1 1688615 R 298386 CDS YP_133203.1 54303210 3121065 complement(1690447..1691862) 1 NC_006371.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 1691862 3121065 PBPRB1540 Photobacterium profundum SS9 selenocysteine synthase YP_133203.1 1690447 R 298386 CDS YP_133204.1 54303211 3120779 1692630..1693052 1 NC_006371.1 GrdX protein 1693052 3120779 PBPRB1542 Photobacterium profundum SS9 GrdX protein YP_133204.1 1692630 D 298386 CDS YP_133205.1 54303212 3120765 complement(1693408..1694454) 1 NC_006371.1 glycine reductase complex selenoprotein B 1694454 3120765 PBPRB1543 Photobacterium profundum SS9 glycine reductase complex selenoprotein B YP_133205.1 1693408 R 298386 CDS YP_133206.1 54303213 3121033 complement(1694468..1695772) 1 NC_006371.1 glycine reductase proprotein GrdE 1695772 3121033 PBPRB1544 Photobacterium profundum SS9 glycine reductase proprotein GrdE YP_133206.1 1694468 R 298386 CDS YP_133207.1 54303214 3121041 complement(1695833..1696804) 1 NC_006371.1 selenophosphate synthase 1696804 3121041 PBPRB1545 Photobacterium profundum SS9 selenophosphate synthase YP_133207.1 1695833 R 298386 CDS YP_133208.1 54303215 3120992 complement(1697015..1698211) 1 NC_006371.1 Fatty acid/phospholipid biosynthesis enzyme 1698211 3120992 PBPRB1546 Photobacterium profundum SS9 Fatty acid/phospholipid biosynthesis enzyme YP_133208.1 1697015 R 298386 CDS YP_133209.1 54303216 3121090 complement(1698224..1699759) 1 NC_006371.1 glycine reductase protein C 1699759 3121090 PBPRB1547 Photobacterium profundum SS9 glycine reductase protein C YP_133209.1 1698224 R 298386 CDS YP_133210.1 54303217 3121083 complement(1699865..1700188) 1 NC_006371.1 GrdA accepts a carboxymethylselenoether from protein B and transfers it to protein C forming a protein C-bound acetyl-thioester; oxidized GrdA is then reduced by thioredoxin; glycine/sarcosine/betaine reductase complex protein A 1700188 3121083 PBPRB1548 Photobacterium profundum SS9 glycine/sarcosine/betaine reductase complex protein A YP_133210.1 1699865 R 298386 CDS YP_133211.1 54303218 3120772 complement(1700344..1700688) 1 NC_006371.1 GrdA accepts a carboxymethylselenoether from protein B and transfers it to protein C forming a protein C-bound acetyl-thioester; oxidized GrdA is then reduced by thioredoxin; glycine/sarcosine/betaine reductase complex protein A 1700688 3120772 PBPRB1549 Photobacterium profundum SS9 glycine/sarcosine/betaine reductase complex protein A YP_133211.1 1700344 R 298386 CDS YP_133212.1 54303219 3121027 complement(1700931..1701257) 1 NC_006371.1 thioredoxin 1701257 3121027 PBPRB1550 Photobacterium profundum SS9 thioredoxin YP_133212.1 1700931 R 298386 CDS YP_133213.1 54303220 3120805 complement(1701267..1702478) 1 NC_006371.1 thioredoxin reductase 1702478 3120805 PBPRB1551 Photobacterium profundum SS9 thioredoxin reductase YP_133213.1 1701267 R 298386 CDS YP_133214.1 54303221 3121061 1703460..1704872 1 NC_006371.1 catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 1 1704872 3121061 PBPRB1552 Photobacterium profundum SS9 aminopeptidase 1 YP_133214.1 1703460 D 298386 CDS YP_133215.1 54303222 3121040 complement(1705098..1705454) 1 NC_006371.1 hypothetical protein 1705454 3121040 PBPRB1553 Photobacterium profundum SS9 hypothetical protein YP_133215.1 1705098 R 298386 CDS YP_133216.1 54303223 3120785 1705590..1706381 1 NC_006371.1 molybdenum transport regulator 1706381 3120785 PBPRB1554 Photobacterium profundum SS9 molybdenum transport regulator YP_133216.1 1705590 D 298386 CDS YP_133217.1 54303224 3121094 complement(1706504..1706779) 1 NC_006371.1 hypothetical protein 1706779 3121094 PBPRB1555 Photobacterium profundum SS9 hypothetical protein YP_133217.1 1706504 R 298386 CDS YP_133218.1 54303225 3119961 1707134..1707553 1 NC_006371.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 1707553 3119961 PBPRB1556 Photobacterium profundum SS9 D-ribose pyranase YP_133218.1 1707134 D 298386 CDS YP_133219.1 54303226 3121022 1707589..1709103 1 NC_006371.1 with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; D-ribose transporter ATP binding protein 1709103 3121022 PBPRB1557 Photobacterium profundum SS9 D-ribose transporter ATP binding protein YP_133219.1 1707589 D 298386 CDS YP_133220.1 54303227 3121117 1709100..1710089 1 NC_006371.1 functions to transport ribose at high affinity; forms a complex with RbsA2C2B; ribose ABC transporter permease protein 1710089 rbsC 3121117 rbsC Photobacterium profundum SS9 ribose ABC transporter permease protein YP_133220.1 1709100 D 298386 CDS YP_133221.1 54303228 3120795 1710189..1711067 1 NC_006371.1 periplasmic substrate-binding component of the ATP-dependent ribose transport system; D-ribose transporter subunit RbsB 1711067 3120795 PBPRB1559 Photobacterium profundum SS9 D-ribose transporter subunit RbsB YP_133221.1 1710189 D 298386 CDS YP_133222.1 54303229 3120927 1711223..1712143 1 NC_006371.1 catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 1712143 3120927 PBPRB1560 Photobacterium profundum SS9 ribokinase YP_133222.1 1711223 D 298386 CDS YP_133223.1 54303230 3121049 1712287..1713288 1 NC_006371.1 ribose operon repressor, rbsR 1713288 3121049 PBPRB1561 Photobacterium profundum SS9 ribose operon repressor, rbsR YP_133223.1 1712287 D 298386 CDS YP_133224.1 54303231 3120901 complement(1713409..1714053) 1 NC_006371.1 3-oxoacyl-ACP reductase 1714053 3120901 PBPRB1562 Photobacterium profundum SS9 3-oxoacyl-ACP reductase YP_133224.1 1713409 R 298386 CDS YP_133225.1 54303232 3120760 1714434..1715438 1 NC_006371.1 transcription regulator 1715438 3120760 PBPRB1563 Photobacterium profundum SS9 transcription regulator YP_133225.1 1714434 D 298386 CDS YP_133226.1 54303233 3120993 complement(1715457..1716689) 1 NC_006371.1 NADH dehydrogenase 1716689 3120993 PBPRB1564 Photobacterium profundum SS9 NADH dehydrogenase YP_133226.1 1715457 R 298386 CDS YP_133227.1 54303234 3120692 complement(1716871..1717218) 1 NC_006371.1 transposase 1717218 3120692 PBPRB1565 Photobacterium profundum SS9 transposase YP_133227.1 1716871 R 298386 CDS YP_133228.1 54303235 3120837 complement(1717561..1718214) 1 NC_006371.1 esterase 1718214 3120837 PBPRB1566 Photobacterium profundum SS9 esterase YP_133228.1 1717561 R 298386 CDS YP_133229.1 54303236 3121029 complement(1718246..1719442) 1 NC_006371.1 transposase 1719442 3121029 PBPRB1567 Photobacterium profundum SS9 transposase YP_133229.1 1718246 R 298386 CDS YP_133230.1 54303237 3120797 complement(1719573..1719827) 1 NC_006371.1 hypothetical protein 1719827 3120797 PBPRB1568 Photobacterium profundum SS9 hypothetical protein YP_133230.1 1719573 R 298386 CDS YP_133231.1 54303238 3120793 1720085..1720966 1 NC_006371.1 LysR family transcriptional regulator 1720966 3120793 PBPRB1569 Photobacterium profundum SS9 LysR family transcriptional regulator YP_133231.1 1720085 D 298386 CDS YP_133232.1 54303239 3121129 complement(1721061..1721666) 1 NC_006371.1 catalyzes the reaction of formaldehyde with glutathione to form S-hydroxymethylglutathione; glutathione-dependent formaldehyde-activating enzyme 1721666 3121129 PBPRB1570 Photobacterium profundum SS9 glutathione-dependent formaldehyde-activating enzyme YP_133232.1 1721061 R 298386 CDS YP_133233.1 54303240 3120828 complement(1721683..1722075) 1 NC_006371.1 hypothetical protein 1722075 3120828 PBPRB1571 Photobacterium profundum SS9 hypothetical protein YP_133233.1 1721683 R 298386 CDS YP_133234.1 54303241 3120813 complement(1722218..1722529) 1 NC_006371.1 hypothetical protein 1722529 3120813 PBPRB1572 Photobacterium profundum SS9 hypothetical protein YP_133234.1 1722218 R 298386 CDS YP_133235.1 54303242 3121112 1723265..1724293 1 NC_006371.1 catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane fatty acyl phospholipid synthase 1724293 3121112 PBPRB1573 Photobacterium profundum SS9 cyclopropane fatty acyl phospholipid synthase YP_133235.1 1723265 D 298386 CDS YP_133236.1 54303243 3121067 1724574..1725077 1 NC_006371.1 hypothetical protein 1725077 3121067 PBPRB1574 Photobacterium profundum SS9 hypothetical protein YP_133236.1 1724574 D 298386 CDS YP_133237.1 54303244 3121047 1725262..1725708 1 NC_006371.1 hypothetical protein 1725708 3121047 PBPRB1575 Photobacterium profundum SS9 hypothetical protein YP_133237.1 1725262 D 298386 CDS YP_133238.1 54303245 3121052 complement(1725801..1726241) 1 NC_006371.1 hypothetical protein 1726241 3121052 PBPRB1576 Photobacterium profundum SS9 hypothetical protein YP_133238.1 1725801 R 298386 CDS YP_133239.1 54303246 3120332 1726420..1727313 1 NC_006371.1 transcriptional regulator 1727313 3120332 PBPRB1577 Photobacterium profundum SS9 transcriptional regulator YP_133239.1 1726420 D 298386 CDS YP_133240.1 54303247 3120876 complement(1727373..1727615) 1 NC_006371.1 hypothetical protein 1727615 3120876 PBPRB1578 Photobacterium profundum SS9 hypothetical protein YP_133240.1 1727373 R 298386 CDS YP_133241.1 54303248 3121098 complement(1727859..1728125) 1 NC_006371.1 hypothetical protein 1728125 3121098 PBPRB1581 Photobacterium profundum SS9 hypothetical protein YP_133241.1 1727859 R 298386 CDS YP_133242.2 161936345 3120957 1728147..1728869 1 NC_006371.1 hypothetical protein 1728869 3120957 PBPRB1582 Photobacterium profundum SS9 hypothetical protein YP_133242.2 1728147 D 298386 CDS YP_133243.1 54303250 3121009 complement(1728959..1729537) 1 NC_006371.1 hypothetical protein 1729537 3121009 PBPRB1583 Photobacterium profundum SS9 hypothetical protein YP_133243.1 1728959 R 298386 CDS YP_133244.1 54303251 3120923 complement(1729784..1731226) 1 NC_006371.1 PTS system, glucose-specific IIBC component 1731226 3120923 PBPRB1584 Photobacterium profundum SS9 PTS system, glucose-specific IIBC component YP_133244.1 1729784 R 298386 CDS YP_133245.1 54303252 3120709 1731502..1732209 1 NC_006371.1 two-component response regulator 1732209 3120709 PBPRB1585 Photobacterium profundum SS9 two-component response regulator YP_133245.1 1731502 D 298386 CDS YP_133246.1 54303253 3120803 1732199..1733635 1 NC_006371.1 sensor histidine kinase 1733635 3120803 PBPRB1586 Photobacterium profundum SS9 sensor histidine kinase YP_133246.1 1732199 D 298386 CDS YP_133247.1 54303254 3120771 1733639..1734880 1 NC_006371.1 binding protein component of ABC sugar transporter 1734880 3120771 PBPRB1587 Photobacterium profundum SS9 binding protein component of ABC sugar transporter YP_133247.1 1733639 D 298386 CDS YP_133248.1 54303255 3120959 complement(1735121..1736689) 1 NC_006371.1 extracellular protease 1736689 3120959 PBPRB1588 Photobacterium profundum SS9 extracellular protease YP_133248.1 1735121 R 298386 CDS YP_133249.1 54303256 3120752 1737208..1738488 1 NC_006371.1 hypothetical protein 1738488 3120752 PBPRB1589 Photobacterium profundum SS9 hypothetical protein YP_133249.1 1737208 D 298386 CDS YP_133250.1 54303257 3120913 complement(1738905..1739228) 1 NC_006371.1 hypothetical protein 1739228 3120913 PBPRB1590 Photobacterium profundum SS9 hypothetical protein YP_133250.1 1738905 R 298386 CDS YP_133251.1 54303258 3120949 1739451..1740572 1 NC_006371.1 hypothetical protein 1740572 3120949 PBPRB1591 Photobacterium profundum SS9 hypothetical protein YP_133251.1 1739451 D 298386 CDS YP_133252.1 54303259 3120705 complement(1740887..1742305) 1 NC_006371.1 transcriptional regulator 1742305 3120705 PBPRB1592 Photobacterium profundum SS9 transcriptional regulator YP_133252.1 1740887 R 298386 CDS YP_133253.2 161936344 3120711 complement(1742586..1743842) 1 NC_006371.1 catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit 1743842 3120711 PBPRB1593 Photobacterium profundum SS9 D-amino acid dehydrogenase small subunit YP_133253.2 1742586 R 298386 CDS YP_133254.1 54303261 3121105 1743982..1744926 1 NC_006371.1 LysR family transcriptional regulator 1744926 3121105 PBPRB1594 Photobacterium profundum SS9 LysR family transcriptional regulator YP_133254.1 1743982 D 298386 CDS YP_133255.1 54303262 3120854 1745753..1746094 1 NC_006371.1 hypothetical protein 1746094 3120854 PBPRB1595 Photobacterium profundum SS9 hypothetical protein YP_133255.1 1745753 D 298386 CDS YP_133256.1 54303263 3120929 1746383..1746859 1 NC_006371.1 hypothetical protein 1746859 3120929 PBPRB1596 Photobacterium profundum SS9 hypothetical protein YP_133256.1 1746383 D 298386 CDS YP_133257.1 54303264 3120878 1747449..1748027 1 NC_006371.1 hypothetical protein 1748027 3120878 PBPRB1597 Photobacterium profundum SS9 hypothetical protein YP_133257.1 1747449 D 298386 CDS YP_133258.1 54303265 3121074 1748085..1748420 1 NC_006371.1 conjugal transfer protein, TrbC 1748420 3121074 PBPRB1598 Photobacterium profundum SS9 conjugal transfer protein, TrbC YP_133258.1 1748085 D 298386 CDS YP_133259.1 54303266 3121119 1748431..1748724 1 NC_006371.1 mating pair formation protein TrbD 1748724 3121119 PBPRB1599 Photobacterium profundum SS9 mating pair formation protein TrbD YP_133259.1 1748431 D 298386 CDS YP_133260.1 54303267 3121032 1748726..1751122 1 NC_006371.1 mating pair formation protein TrbE 1751122 3121032 PBPRB1600 Photobacterium profundum SS9 mating pair formation protein TrbE YP_133260.1 1748726 D 298386 CDS YP_133261.1 54303268 3120912 1751222..1752001 1 NC_006371.1 hypothetical protein 1752001 3120912 PBPRB1601 Photobacterium profundum SS9 hypothetical protein YP_133261.1 1751222 D 298386 CDS YP_133262.1 54303269 3120511 1752026..1752934 1 NC_006371.1 hypothetical protein 1752934 3120511 PBPRB1602 Photobacterium profundum SS9 hypothetical protein YP_133262.1 1752026 D 298386 CDS YP_133263.1 54303270 3121064 1752944..1754257 1 NC_006371.1 conjugal transfer protein TrbL 1754257 3121064 PBPRB1603 Photobacterium profundum SS9 conjugal transfer protein TrbL YP_133263.1 1752944 D 298386 CDS YP_133264.1 54303271 3120886 1754260..1754928 1 NC_006371.1 conjugal transfer protein TrbF 1754928 3120886 PBPRB1604 Photobacterium profundum SS9 conjugal transfer protein TrbF YP_133264.1 1754260 D 298386 CDS YP_133265.1 54303272 3120932 1754941..1755813 1 NC_006371.1 P-type conjugative transfer protein TrbG 1755813 3120932 PBPRB1605 Photobacterium profundum SS9 P-type conjugative transfer protein TrbG YP_133265.1 1754941 D 298386 CDS YP_133266.1 54303273 3121063 1755817..1756242 1 NC_006371.1 hypothetical protein 1756242 3121063 PBPRB1606 Photobacterium profundum SS9 hypothetical protein YP_133266.1 1755817 D 298386 CDS YP_133267.1 54303274 3120717 1756319..1757455 1 NC_006371.1 hypothetical protein 1757455 3120717 PBPRB1607 Photobacterium profundum SS9 hypothetical protein YP_133267.1 1756319 D 298386 CDS YP_133268.1 54303275 3120890 1757479..1758453 1 NC_006371.1 hypothetical protein 1758453 3120890 PBPRB1608 Photobacterium profundum SS9 hypothetical protein YP_133268.1 1757479 D 298386 CDS YP_133269.1 54303276 3120382 1758453..1759919 1 NC_006371.1 hypothetical protein 1759919 3120382 PBPRB1609 Photobacterium profundum SS9 hypothetical protein YP_133269.1 1758453 D 298386 CDS YP_133270.1 54303277 3120990 1759916..1760242 1 NC_006371.1 hypothetical protein 1760242 3120990 PBPRB1610 Photobacterium profundum SS9 hypothetical protein YP_133270.1 1759916 D 298386 CDS YP_133271.1 54303278 3120794 1760371..1761039 1 NC_006371.1 hypothetical protein 1761039 3120794 PBPRB1611 Photobacterium profundum SS9 hypothetical protein YP_133271.1 1760371 D 298386 CDS YP_133272.1 54303279 3120859 1761084..1761617 1 NC_006371.1 hypothetical protein 1761617 3120859 PBPRB1612 Photobacterium profundum SS9 hypothetical protein YP_133272.1 1761084 D 298386 CDS YP_133273.1 54303280 3120773 1761620..1763209 1 NC_006371.1 type II secretion protein 1763209 3120773 PBPRB1613 Photobacterium profundum SS9 type II secretion protein YP_133273.1 1761620 D 298386 CDS YP_133274.1 54303281 3121014 1763206..1764195 1 NC_006371.1 hypothetical protein 1764195 3121014 PBPRB1614 Photobacterium profundum SS9 hypothetical protein YP_133274.1 1763206 D 298386 CDS YP_133275.1 54303282 3120455 1764207..1764755 1 NC_006371.1 hypothetical protein 1764755 3120455 PBPRB1615 Photobacterium profundum SS9 hypothetical protein YP_133275.1 1764207 D 298386 CDS YP_133276.1 54303283 3120891 1764757..1765269 1 NC_006371.1 polyprotein 1765269 3120891 PBPRB1616 Photobacterium profundum SS9 polyprotein YP_133276.1 1764757 D 298386 CDS YP_133277.1 54303284 3120907 1765269..1766213 1 NC_006371.1 type IV pilin PilA 1766213 3120907 PBPRB1617 Photobacterium profundum SS9 type IV pilin PilA YP_133277.1 1765269 D 298386 CDS YP_133278.1 54303285 3120707 1766229..1766648 1 NC_006371.1 hypothetical protein 1766648 3120707 PBPRB1618 Photobacterium profundum SS9 hypothetical protein YP_133278.1 1766229 D 298386 CDS YP_133279.1 54303286 3120766 1766811..1767869 1 NC_006371.1 hypothetical protein 1767869 3120766 PBPRB1619 Photobacterium profundum SS9 hypothetical protein YP_133279.1 1766811 D 298386 CDS YP_133280.1 54303287 3121025 1767956..1768483 1 NC_006371.1 conjugal transfer protein TraF 1768483 3121025 PBPRB1620 Photobacterium profundum SS9 conjugal transfer protein TraF YP_133280.1 1767956 D 298386 CDS YP_133281.1 54303288 3120831 1768486..1769013 1 NC_006371.1 conjugal transfer protein 1769013 3120831 PBPRB1621 Photobacterium profundum SS9 conjugal transfer protein YP_133281.1 1768486 D 298386 CDS YP_133282.1 54303289 3120847 1769029..1770891 1 NC_006371.1 hypothetical protein 1770891 3120847 PBPRB1622 Photobacterium profundum SS9 hypothetical protein YP_133282.1 1769029 D 298386 CDS YP_133283.1 54303290 3121073 1771055..1771378 1 NC_006371.1 hypothetical protein 1771378 3121073 PBPRB1623 Photobacterium profundum SS9 hypothetical protein YP_133283.1 1771055 D 298386 CDS YP_133284.1 54303291 3120566 complement(1771395..1773161) 1 NC_006371.1 hypothetical protein 1773161 3120566 PBPRB1624 Photobacterium profundum SS9 hypothetical protein YP_133284.1 1771395 R 298386 CDS YP_133285.1 54303292 3120702 complement(1773158..1773481) 1 NC_006371.1 hypothetical protein 1773481 3120702 PBPRB1625 Photobacterium profundum SS9 hypothetical protein YP_133285.1 1773158 R 298386 CDS YP_133286.1 54303293 3120735 1773756..1774076 1 NC_006371.1 hypothetical protein 1774076 3120735 PBPRB1626 Photobacterium profundum SS9 hypothetical protein YP_133286.1 1773756 D 298386 CDS YP_133287.1 54303294 3121775 1774092..1774655 1 NC_006371.1 hypothetical protein 1774655 3121775 PBPRB1627 Photobacterium profundum SS9 hypothetical protein YP_133287.1 1774092 D 298386 CDS YP_133288.1 54303295 3121886 1774950..1775429 1 NC_006371.1 hypothetical protein 1775429 3121886 PBPRB1628 Photobacterium profundum SS9 hypothetical protein YP_133288.1 1774950 D 298386 CDS YP_133289.1 54303296 3121889 complement(1775707..1776222) 1 NC_006371.1 hypothetical protein 1776222 3121889 PBPRB1629 Photobacterium profundum SS9 hypothetical protein YP_133289.1 1775707 R 298386 CDS YP_133290.1 54303297 3121737 complement(1776334..1776588) 1 NC_006371.1 hypothetical protein 1776588 3121737 PBPRB1630 Photobacterium profundum SS9 hypothetical protein YP_133290.1 1776334 R 298386 CDS YP_133291.1 54303298 3121856 complement(1776761..1777738) 1 NC_006371.1 antirestriction protein 1777738 3121856 PBPRB1631 Photobacterium profundum SS9 antirestriction protein YP_133291.1 1776761 R 298386 CDS YP_133292.1 54303299 3121743 1778663..1778986 1 NC_006371.1 Gfo/Idh/MocA family oxidoreductase 1778986 3121743 PBPRB1632 Photobacterium profundum SS9 Gfo/Idh/MocA family oxidoreductase YP_133292.1 1778663 D 298386 CDS YP_133293.1 54303300 3121749 1778983..1779453 1 NC_006371.1 hypothetical protein 1779453 3121749 PBPRB1633 Photobacterium profundum SS9 hypothetical protein YP_133293.1 1778983 D 298386 CDS YP_133294.1 54303301 3121795 1779758..1780114 1 NC_006371.1 cation efflux pump 1780114 3121795 PBPRB1634 Photobacterium profundum SS9 cation efflux pump YP_133294.1 1779758 D 298386 CDS YP_133295.1 54303302 3121770 1780534..1781109 1 NC_006371.1 Na+-driven multidrug efflux pump 1781109 3121770 PBPRB1635 Photobacterium profundum SS9 Na+-driven multidrug efflux pump YP_133295.1 1780534 D 298386 CDS YP_133296.1 54303303 3121785 1781278..1782225 1 NC_006371.1 transcriptional regulator 1782225 3121785 PBPRB1636 Photobacterium profundum SS9 transcriptional regulator YP_133296.1 1781278 D 298386 CDS YP_133297.1 54303304 3121769 1782511..1783653 1 NC_006371.1 RND multidrug efflux membrane fusion protein MexE 1783653 3121769 PBPRB1637 Photobacterium profundum SS9 RND multidrug efflux membrane fusion protein MexE YP_133297.1 1782511 D 298386 CDS YP_133298.1 54303305 3121851 1783665..1786799 1 NC_006371.1 multidrug efflux RND transporter MexF 1786799 3121851 PBPRB1638 Photobacterium profundum SS9 multidrug efflux RND transporter MexF YP_133298.1 1783665 D 298386 CDS YP_133299.1 54303306 3121911 1787124..1788143 1 NC_006371.1 hypothetical protein 1788143 3121911 PBPRB1639 Photobacterium profundum SS9 hypothetical protein YP_133299.1 1787124 D 298386 CDS YP_133300.1 54303307 3121776 complement(1788666..1789694) 1 NC_006371.1 hypothetical protein 1789694 3121776 PBPRB1640 Photobacterium profundum SS9 hypothetical protein YP_133300.1 1788666 R 298386 CDS YP_133301.1 54303308 3121761 1789755..1790141 1 NC_006371.1 hypothetical protein 1790141 3121761 PBPRB1641 Photobacterium profundum SS9 hypothetical protein YP_133301.1 1789755 D 298386 CDS YP_133302.1 54303309 3121753 1790355..1790921 1 NC_006371.1 hypothetical protein 1790921 3121753 PBPRB1642 Photobacterium profundum SS9 hypothetical protein YP_133302.1 1790355 D 298386 CDS YP_133303.1 54303310 3121756 1791024..1791368 1 NC_006371.1 ArsR family transcriptional regulator 1791368 3121756 PBPRB1643 Photobacterium profundum SS9 ArsR family transcriptional regulator YP_133303.1 1791024 D 298386 CDS YP_133304.1 54303311 3121853 1791476..1792816 1 NC_006371.1 succinate-semialdehyde dehydrogenase 1792816 3121853 PBPRB1644 Photobacterium profundum SS9 succinate-semialdehyde dehydrogenase YP_133304.1 1791476 D 298386 CDS YP_133305.1 54303312 3121918 1792826..1793593 1 NC_006371.1 hypothetical protein 1793593 3121918 PBPRB1645 Photobacterium profundum SS9 hypothetical protein YP_133305.1 1792826 D 298386 CDS YP_133306.1 54303313 3121782 1793609..1794757 1 NC_006371.1 oxygen-independent coproporphyrinogen III oxidase 1794757 3121782 PBPRB1646 Photobacterium profundum SS9 oxygen-independent coproporphyrinogen III oxidase YP_133306.1 1793609 D 298386 CDS YP_133307.1 54303314 3121890 complement(1794886..1795506) 1 NC_006371.1 threonine efflux protein 1795506 3121890 PBPRB1647 Photobacterium profundum SS9 threonine efflux protein YP_133307.1 1794886 R 298386 CDS YP_133308.1 54303315 3121919 complement(1795208..1796086) 1 NC_006371.1 transcriptional regulator 1796086 3121919 PBPRB1648 Photobacterium profundum SS9 transcriptional regulator YP_133308.1 1795208 R 298386 CDS YP_133309.1 54303316 3121767 1796297..1796683 1 NC_006371.1 transposase 1796683 3121767 PBPRB1649 Photobacterium profundum SS9 transposase YP_133309.1 1796297 D 298386 CDS YP_133310.1 54303317 3121788 complement(1797648..1798739) 1 NC_006371.1 N-ethylmaleimide reductase 1798739 3121788 PBPRB1650 Photobacterium profundum SS9 N-ethylmaleimide reductase YP_133310.1 1797648 R 298386 CDS YP_133311.1 54303318 3121829 complement(1798742..1799725) 1 NC_006371.1 N-ethylmaleimide reductase 1799725 3121829 PBPRB1651 Photobacterium profundum SS9 N-ethylmaleimide reductase YP_133311.1 1798742 R 298386 CDS YP_133312.1 54303319 3121880 complement(1799972..1800865) 1 NC_006371.1 LysR family transcriptional regulator 1800865 3121880 PBPRB1652 Photobacterium profundum SS9 LysR family transcriptional regulator YP_133312.1 1799972 R 298386 CDS YP_133313.1 54303320 3121870 complement(1801050..1801535) 1 NC_006371.1 transposase 1801535 3121870 PBPRB1653 Photobacterium profundum SS9 transposase YP_133313.1 1801050 R 298386 CDS YP_133314.1 54303321 3121855 complement(1801780..1802310) 1 NC_006371.1 ribosomal protein N-acetyltransferase 1802310 3121855 PBPRB1654 Photobacterium profundum SS9 ribosomal protein N-acetyltransferase YP_133314.1 1801780 R 298386 CDS YP_133315.1 54303322 3121838 1802530..1802847 1 NC_006371.1 transposase Tn10 1802847 3121838 PBPRB1655 Photobacterium profundum SS9 transposase Tn10 YP_133315.1 1802530 D 298386 CDS YP_133316.1 54303323 3121772 complement(1802938..1803498) 1 NC_006371.1 transposase 1803498 3121772 PBPRB1656 Photobacterium profundum SS9 transposase YP_133316.1 1802938 R 298386 CDS YP_133317.1 54303324 3121857 complement(1803744..1804112) 1 NC_006371.1 transcriptional regulator 1804112 3121857 PBPRB1657 Photobacterium profundum SS9 transcriptional regulator YP_133317.1 1803744 R 298386 CDS YP_133318.1 54303325 3121881 complement(1804346..1804825) 1 NC_006371.1 hypothetical protein 1804825 3121881 PBPRB1658 Photobacterium profundum SS9 hypothetical protein YP_133318.1 1804346 R 298386 CDS YP_133319.1 54303326 3121908 complement(1804922..1805506) 1 NC_006371.1 hypothetical protein 1805506 3121908 PBPRB1659 Photobacterium profundum SS9 hypothetical protein YP_133319.1 1804922 R 298386 CDS YP_133320.1 54303327 3121847 1806249..1806599 1 NC_006371.1 acyl-CoA synthetase 1806599 3121847 PBPRB1660 Photobacterium profundum SS9 acyl-CoA synthetase YP_133320.1 1806249 D 298386 CDS YP_133321.1 54303328 3121739 complement(1806635..1806901) 1 NC_006371.1 hypothetical protein 1806901 3121739 PBPRB1661 Photobacterium profundum SS9 hypothetical protein YP_133321.1 1806635 R 298386 CDS YP_133322.1 54303329 3121846 complement(1806902..1807642) 1 NC_006371.1 transposase 1807642 3121846 PBPRB1662 Photobacterium profundum SS9 transposase YP_133322.1 1806902 R 298386 CDS YP_133323.1 54303330 3121930 complement(1807938..1808231) 1 NC_006371.1 hypothetical protein 1808231 3121930 PBPRB1663 Photobacterium profundum SS9 hypothetical protein YP_133323.1 1807938 R 298386 CDS YP_133324.1 54303331 3121752 1808543..1809340 1 NC_006371.1 transposase 1809340 3121752 PBPRB1664 Photobacterium profundum SS9 transposase YP_133324.1 1808543 D 298386 CDS YP_133325.1 54303332 3121902 complement(1809667..1810092) 1 NC_006371.1 riboflavin biosynthesis protein RibD 1810092 3121902 PBPRB1665 Photobacterium profundum SS9 riboflavin biosynthesis protein RibD YP_133325.1 1809667 R 298386 CDS YP_133326.1 54303333 3121929 complement(1810676..1810972) 1 NC_006371.1 hypothetical protein 1810972 3121929 PBPRB1666 Photobacterium profundum SS9 hypothetical protein YP_133326.1 1810676 R 298386 CDS YP_133327.1 54303334 3121804 complement(1811051..1811806) 1 NC_006371.1 short chain dehydrogenase 1811806 3121804 PBPRB1667 Photobacterium profundum SS9 short chain dehydrogenase YP_133327.1 1811051 R 298386 CDS YP_133328.1 54303335 3121867 complement(1811815..1812210) 1 NC_006371.1 hypothetical protein 1812210 3121867 PBPRB1668 Photobacterium profundum SS9 hypothetical protein YP_133328.1 1811815 R 298386 CDS YP_133329.1 54303336 3121778 complement(1812314..1813009) 1 NC_006371.1 transcriptional regulator 1813009 3121778 PBPRB1669 Photobacterium profundum SS9 transcriptional regulator YP_133329.1 1812314 R 298386 CDS YP_133330.1 54303337 3121883 complement(1814272..1814904) 1 NC_006371.1 hypothetical protein 1814904 3121883 PBPRB1670 Photobacterium profundum SS9 hypothetical protein YP_133330.1 1814272 R 298386 CDS YP_133331.1 54303338 3121777 complement(1815106..1815474) 1 NC_006371.1 hypothetical protein 1815474 3121777 PBPRB1671 Photobacterium profundum SS9 hypothetical protein YP_133331.1 1815106 R 298386 CDS YP_133332.1 54303339 3121705 complement(1815474..1815779) 1 NC_006371.1 hypothetical protein 1815779 3121705 PBPRB1672 Photobacterium profundum SS9 hypothetical protein YP_133332.1 1815474 R 298386 CDS YP_133333.1 54303340 3121688 complement(1816114..1816410) 1 NC_006371.1 hypothetical protein 1816410 3121688 PBPRB1673 Photobacterium profundum SS9 hypothetical protein YP_133333.1 1816114 R 298386 CDS YP_133334.1 54303341 3121901 1816697..1817026 1 NC_006371.1 phage repressor protein C 1817026 3121901 PBPRB1674 Photobacterium profundum SS9 phage repressor protein C YP_133334.1 1816697 D 298386 CDS YP_133335.1 54303342 3121892 1817093..1818073 1 NC_006371.1 bacteriophage integrase 1818073 3121892 PBPRB1675 Photobacterium profundum SS9 bacteriophage integrase YP_133335.1 1817093 D 298386 CDS YP_133336.1 54303343 3121840 1818244..1819425 1 NC_006371.1 sodium/hydrogen antiporter family protein 1819425 3121840 PBPRB1676 Photobacterium profundum SS9 sodium/hydrogen antiporter family protein YP_133336.1 1818244 D 298386 CDS YP_133337.1 54303344 3121852 complement(1819585..1822656) 1 NC_006371.1 AcrB/AcrD/AcrF family transporter 1822656 3121852 PBPRB1677 Photobacterium profundum SS9 AcrB/AcrD/AcrF family transporter YP_133337.1 1819585 R 298386 CDS YP_133338.1 54303345 3121781 complement(1822653..1823738) 1 NC_006371.1 periplasmic linker protein 1823738 3121781 PBPRB1678 Photobacterium profundum SS9 periplasmic linker protein YP_133338.1 1822653 R 298386 CDS YP_133339.1 54303346 3121818 complement(1823741..1824808) 1 NC_006371.1 multidrug resistance protein 1824808 3121818 PBPRB1679 Photobacterium profundum SS9 multidrug resistance protein YP_133339.1 1823741 R 298386 CDS YP_133340.1 54303347 3121787 complement(1825423..1826646) 1 NC_006371.1 multidrug resistance efflux pump 1826646 3121787 PBPRB1680 Photobacterium profundum SS9 multidrug resistance efflux pump YP_133340.1 1825423 R 298386 CDS YP_133341.1 54303348 3121763 complement(1826639..1827016) 1 NC_006371.1 major facilitator superfamily permease 1827016 3121763 PBPRB1681 Photobacterium profundum SS9 major facilitator superfamily permease YP_133341.1 1826639 R 298386 CDS YP_133342.1 54303349 3121742 1827335..1828228 1 NC_006371.1 AraC family transcriptional regulator 1828228 3121742 PBPRB1682 Photobacterium profundum SS9 AraC family transcriptional regulator YP_133342.1 1827335 D 298386 CDS YP_133343.1 54303350 3121917 complement(1828238..1828750) 1 NC_006371.1 hypothetical protein 1828750 3121917 PBPRB1683 Photobacterium profundum SS9 hypothetical protein YP_133343.1 1828238 R 298386 CDS YP_133344.1 54303351 3121926 1829043..1829978 1 NC_006371.1 hypothetical protein 1829978 3121926 PBPRB1684 Photobacterium profundum SS9 hypothetical protein YP_133344.1 1829043 D 298386 CDS YP_133345.1 54303352 3121899 complement(1830305..1831792) 1 NC_006371.1 glycine betaine transporter 1831792 3121899 PBPRB1685 Photobacterium profundum SS9 glycine betaine transporter YP_133345.1 1830305 R 298386 CDS YP_133346.1 54303353 3121895 1832253..1833920 1 NC_006371.1 SecA-like protein 1833920 3121895 PBPRB1686 Photobacterium profundum SS9 SecA-like protein YP_133346.1 1832253 D 298386 CDS YP_133347.1 54303354 3121831 complement(1834046..1835233) 1 NC_006371.1 hypothetical protein 1835233 3121831 PBPRB1687 Photobacterium profundum SS9 hypothetical protein YP_133347.1 1834046 R 298386 CDS YP_133348.1 54303355 3121920 1835301..1836566 1 NC_006371.1 hypothetical protein 1836566 3121920 PBPRB1688 Photobacterium profundum SS9 hypothetical protein YP_133348.1 1835301 D 298386 CDS YP_133349.1 54303356 3121750 1836720..1837187 1 NC_006371.1 hypothetical protein 1837187 3121750 PBPRB1689 Photobacterium profundum SS9 hypothetical protein YP_133349.1 1836720 D 298386 CDS YP_133350.1 54303357 3121842 complement(1837721..1838518) 1 NC_006371.1 hypothetical protein 1838518 3121842 PBPRB1690 Photobacterium profundum SS9 hypothetical protein YP_133350.1 1837721 R 298386 CDS YP_133351.1 54303358 3121825 complement(1838597..1838905) 1 NC_006371.1 hypothetical protein 1838905 3121825 PBPRB1691 Photobacterium profundum SS9 hypothetical protein YP_133351.1 1838597 R 298386 CDS YP_133352.1 54303359 3121914 1839386..1840273 1 NC_006371.1 hypothetical protein 1840273 3121914 PBPRB1692 Photobacterium profundum SS9 hypothetical protein YP_133352.1 1839386 D 298386 CDS YP_133353.1 54303360 3121905 1840270..1841322 1 NC_006371.1 transposase 1841322 3121905 PBPRB1693 Photobacterium profundum SS9 transposase YP_133353.1 1840270 D 298386 CDS YP_133354.1 54303361 3121935 1841590..1843155 1 NC_006371.1 hypothetical protein 1843155 3121935 PBPRB1694 Photobacterium profundum SS9 hypothetical protein YP_133354.1 1841590 D 298386 CDS YP_133355.1 54303362 3121866 1843584..1843835 1 NC_006371.1 hypothetical protein 1843835 3121866 PBPRB1695 Photobacterium profundum SS9 hypothetical protein YP_133355.1 1843584 D 298386 CDS YP_133356.1 54303363 3121794 complement(1844257..1844796) 1 NC_006371.1 hypothetical protein 1844796 3121794 PBPRB1696 Photobacterium profundum SS9 hypothetical protein YP_133356.1 1844257 R 298386 CDS YP_133357.1 54303364 3121828 1844967..1846154 1 NC_006371.1 hypothetical protein 1846154 3121828 PBPRB1697 Photobacterium profundum SS9 hypothetical protein YP_133357.1 1844967 D 298386 CDS YP_133358.1 54303365 3121837 complement(1846268..1846774) 1 NC_006371.1 GNAT family acetyltransferase 1846774 3121837 PBPRB1698 Photobacterium profundum SS9 GNAT family acetyltransferase YP_133358.1 1846268 R 298386 CDS YP_133359.1 54303366 3121806 1846840..1848063 1 NC_006371.1 transposase 1848063 3121806 PBPRB1699 Photobacterium profundum SS9 transposase YP_133359.1 1846840 D 298386 CDS YP_133360.1 54303367 3121937 complement(1848487..1849776) 1 NC_006371.1 hypothetical protein 1849776 3121937 PBPRB1700 Photobacterium profundum SS9 hypothetical protein YP_133360.1 1848487 R 298386 CDS YP_133361.1 54303368 3121757 complement(1849988..1850524) 1 NC_006371.1 hypothetical protein 1850524 3121757 PBPRB1701 Photobacterium profundum SS9 hypothetical protein YP_133361.1 1849988 R 298386 CDS YP_133362.1 54303369 3121933 complement(1850536..1851036) 1 NC_006371.1 hypothetical protein 1851036 3121933 PBPRB1702 Photobacterium profundum SS9 hypothetical protein YP_133362.1 1850536 R 298386 CDS YP_133363.1 54303370 3121780 complement(1851493..1851786) 1 NC_006371.1 hypothetical protein 1851786 3121780 PBPRB1703 Photobacterium profundum SS9 hypothetical protein YP_133363.1 1851493 R 298386 CDS YP_133364.1 54303371 3121812 complement(1852579..1852893) 1 NC_006371.1 hypothetical protein 1852893 3121812 PBPRB1704 Photobacterium profundum SS9 hypothetical protein YP_133364.1 1852579 R 298386 CDS YP_133365.1 54303372 3121751 complement(1853074..1854270) 1 NC_006371.1 hypothetical protein 1854270 3121751 PBPRB1705 Photobacterium profundum SS9 hypothetical protein YP_133365.1 1853074 R 298386 CDS YP_133366.1 54303373 3121932 complement(1855126..1855512) 1 NC_006371.1 hypothetical protein 1855512 3121932 PBPRB1706 Photobacterium profundum SS9 hypothetical protein YP_133366.1 1855126 R 298386 CDS YP_133367.1 54303374 3121821 complement(1856254..1856556) 1 NC_006371.1 hypothetical protein 1856556 3121821 PBPRB1707 Photobacterium profundum SS9 hypothetical protein YP_133367.1 1856254 R 298386 CDS YP_133368.1 54303375 3121924 1856764..1857951 1 NC_006371.1 hypothetical protein 1857951 3121924 PBPRB1708 Photobacterium profundum SS9 hypothetical protein YP_133368.1 1856764 D 298386 CDS YP_133369.1 54303376 3121800 1859801..1861366 1 NC_006371.1 hypothetical protein 1861366 3121800 PBPRB1709 Photobacterium profundum SS9 hypothetical protein YP_133369.1 1859801 D 298386 CDS YP_133370.1 54303377 3121760 complement(1861695..1862102) 1 NC_006371.1 hypothetical protein 1862102 3121760 PBPRB1710 Photobacterium profundum SS9 hypothetical protein YP_133370.1 1861695 R 298386 CDS YP_133371.1 54303378 3121789 complement(1862114..1862713) 1 NC_006371.1 hypothetical protein 1862713 3121789 PBPRB1711 Photobacterium profundum SS9 hypothetical protein YP_133371.1 1862114 R 298386 CDS YP_133372.1 54303379 3121819 complement(1862746..1863267) 1 NC_006371.1 transposase 1863267 3121819 PBPRB1712 Photobacterium profundum SS9 transposase YP_133372.1 1862746 R 298386 CDS YP_133373.1 54303380 3121916 1863331..1863750 1 NC_006371.1 hypothetical protein 1863750 3121916 PBPRB1713 Photobacterium profundum SS9 hypothetical protein YP_133373.1 1863331 D 298386 CDS YP_133374.1 54303381 3121790 1863915..1865357 1 NC_006371.1 hypothetical protein 1865357 3121790 PBPRB1714 Photobacterium profundum SS9 hypothetical protein YP_133374.1 1863915 D 298386 CDS YP_133375.1 54303382 3121730 complement(1865753..1866199) 1 NC_006371.1 hypothetical protein 1866199 3121730 PBPRB1715 Photobacterium profundum SS9 hypothetical protein YP_133375.1 1865753 R 298386 CDS YP_133376.1 54303383 3121815 complement(1866311..1867354) 1 NC_006371.1 catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase 1867354 3121815 PBPRB1716 Photobacterium profundum SS9 guanosine 5'-monophosphate oxidoreductase YP_133376.1 1866311 R 298386 CDS YP_133377.1 54303384 3121733 1867721..1868050 1 NC_006371.1 hypothetical protein 1868050 3121733 PBPRB1717 Photobacterium profundum SS9 hypothetical protein YP_133377.1 1867721 D 298386 CDS YP_133378.1 54303385 3121758 complement(1868367..1869263) 1 NC_006371.1 hypothetical protein 1869263 3121758 PBPRB1718 Photobacterium profundum SS9 hypothetical protein YP_133378.1 1868367 R 298386 CDS YP_133379.1 54303386 3121832 complement(1869421..1870566) 1 NC_006371.1 transposase 1870566 3121832 PBPRB1719 Photobacterium profundum SS9 transposase YP_133379.1 1869421 R 298386 CDS YP_133380.1 54303387 3121906 complement(1870602..1870868) 1 NC_006371.1 hypothetical protein 1870868 3121906 PBPRB1720 Photobacterium profundum SS9 hypothetical protein YP_133380.1 1870602 R 298386 CDS YP_133381.1 54303388 3121839 complement(1870957..1871937) 1 NC_006371.1 hypothetical protein 1871937 3121839 PBPRB1721 Photobacterium profundum SS9 hypothetical protein YP_133381.1 1870957 R 298386 CDS YP_133382.1 54303389 3121910 complement(1872237..1873403) 1 NC_006371.1 oligogalacturonate lyase 1873403 3121910 PBPRB1722 Photobacterium profundum SS9 oligogalacturonate lyase YP_133382.1 1872237 R 298386 CDS YP_133383.1 54303390 3121729 complement(1873455..1875167) 1 NC_006371.1 transporter 1875167 3121729 PBPRB1723 Photobacterium profundum SS9 transporter YP_133383.1 1873455 R 298386 CDS YP_133384.1 54303391 3121718 complement(1875394..1876344) 1 NC_006371.1 hypothetical protein 1876344 3121718 PBPRB1724 Photobacterium profundum SS9 hypothetical protein YP_133384.1 1875394 R 298386 CDS YP_133385.1 54303392 3121801 complement(1876686..1878821) 1 NC_006371.1 exopolygalacturonate lyase 1878821 3121801 PBPRB1725 Photobacterium profundum SS9 exopolygalacturonate lyase YP_133385.1 1876686 R 298386 CDS YP_133386.1 54303393 3121865 complement(1878932..1879618) 1 NC_006371.1 hypothetical protein 1879618 3121865 PBPRB1726 Photobacterium profundum SS9 hypothetical protein YP_133386.1 1878932 R 298386 CDS YP_133387.1 54303394 3121835 complement(1879920..1880594) 1 NC_006371.1 transcriptional regulator 1880594 3121835 PBPRB1727 Photobacterium profundum SS9 transcriptional regulator YP_133387.1 1879920 R 298386 CDS YP_133388.1 54303395 3121711 complement(1880820..1882127) 1 NC_006371.1 permease large protein, C4-dicarboxylate transport system 1882127 3121711 PBPRB1728 Photobacterium profundum SS9 permease large protein, C4-dicarboxylate transport system YP_133388.1 1880820 R 298386 CDS YP_133389.1 54303396 3121715 complement(1882140..1882625) 1 NC_006371.1 C4-dicarboxylate transporter, small permease component 1882625 3121715 PBPRB1729 Photobacterium profundum SS9 C4-dicarboxylate transporter, small permease component YP_133389.1 1882140 R 298386 CDS YP_133390.1 54303397 3121721 complement(1882738..1883730) 1 NC_006371.1 C4-dicarboxylate-binding protein 1883730 3121721 PBPRB1730 Photobacterium profundum SS9 C4-dicarboxylate-binding protein YP_133390.1 1882738 R 298386 CDS YP_133391.1 54303398 3121773 complement(1883765..1884604) 1 NC_006371.1 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; 5-keto-4-deoxyuronate isomerase 1884604 3121773 PBPRB1731 Photobacterium profundum SS9 5-keto-4-deoxyuronate isomerase YP_133391.1 1883765 R 298386 CDS YP_133392.1 54303399 3121774 complement(1884872..1885495) 1 NC_006371.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 1885495 3121774 PBPRB1732 Photobacterium profundum SS9 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_133392.1 1884872 R 298386 CDS YP_133393.1 54303400 3121714 complement(1885507..1886436) 1 NC_006371.1 2-dehydro-3-deoxygluconokinase 1886436 3121714 PBPRB1733 Photobacterium profundum SS9 2-dehydro-3-deoxygluconokinase YP_133393.1 1885507 R 298386 CDS YP_133394.1 54303401 3121740 complement(1886625..1887212) 1 NC_006371.1 hypothetical protein 1887212 3121740 PBPRB1734 Photobacterium profundum SS9 hypothetical protein YP_133394.1 1886625 R 298386 CDS YP_133395.1 54303402 3121708 complement(1887303..1887623) 1 NC_006371.1 hypothetical protein 1887623 3121708 PBPRB1735 Photobacterium profundum SS9 hypothetical protein YP_133395.1 1887303 R 298386 CDS YP_133396.1 54303403 3121726 complement(1887642..1888121) 1 NC_006371.1 hypothetical protein 1888121 3121726 PBPRB1736 Photobacterium profundum SS9 hypothetical protein YP_133396.1 1887642 R 298386 CDS YP_133397.1 54303404 3121784 complement(1888192..1888953) 1 NC_006371.1 catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; 2-deoxy-D-gluconate 3-dehydrogenase 1888953 3121784 PBPRB1737 Photobacterium profundum SS9 2-deoxy-D-gluconate 3-dehydrogenase YP_133397.1 1888192 R 298386 CDS YP_133398.1 54303405 3121759 1889212..1889997 1 NC_006371.1 transcriptional regulator 1889997 3121759 PBPRB1738 Photobacterium profundum SS9 transcriptional regulator YP_133398.1 1889212 D 298386 CDS YP_133399.1 54303406 3121727 1890075..1891943 1 NC_006371.1 hypothetical protein 1891943 3121727 PBPRB1739 Photobacterium profundum SS9 hypothetical protein YP_133399.1 1890075 D 298386 CDS YP_133400.1 54303407 3121717 1891946..1892656 1 NC_006371.1 DNA polymerase III 1892656 3121717 PBPRB1740 Photobacterium profundum SS9 DNA polymerase III YP_133400.1 1891946 D 298386 CDS YP_133401.1 54303408 3121716 complement(1892742..1894481) 1 NC_006371.1 carnitine o-acyltransferase 1894481 3121716 PBPRB1741 Photobacterium profundum SS9 carnitine o-acyltransferase YP_133401.1 1892742 R 298386 CDS YP_133402.1 54303409 3121724 complement(1894727..1895929) 1 NC_006371.1 ATP-binding component of ABC transporter 1895929 3121724 PBPRB1742 Photobacterium profundum SS9 ATP-binding component of ABC transporter YP_133402.1 1894727 R 298386 CDS YP_133403.1 54303410 3121709 complement(1895932..1896780) 1 NC_006371.1 permease of ABC transporter 1896780 3121709 PBPRB1743 Photobacterium profundum SS9 permease of ABC transporter YP_133403.1 1895932 R 298386 CDS YP_133404.1 54303411 3121879 complement(1896925..1897875) 1 NC_006371.1 glycine betaine-binding ABC transporter 1897875 3121879 PBPRB1744 Photobacterium profundum SS9 glycine betaine-binding ABC transporter YP_133404.1 1896925 R 298386 CDS YP_133405.1 54303412 3121754 complement(1898022..1899728) 1 NC_006371.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase 1899728 3121754 PBPRB1745 Photobacterium profundum SS9 choline dehydrogenase YP_133405.1 1898022 R 298386 CDS YP_133406.1 54303413 3121876 complement(1900165..1901289) 1 NC_006371.1 betaine aldehyde dehydrogenase 1901289 3121876 PBPRB1746 Photobacterium profundum SS9 betaine aldehyde dehydrogenase YP_133406.1 1900165 R 298386 CDS YP_133407.1 54303414 3121810 complement(1901332..1901910) 1 NC_006371.1 HTH-type; bet1; Repressor involved in choline regulation of the bet genes; transcriptional regulator BetI 1901910 3121810 PBPRB1747 Photobacterium profundum SS9 transcriptional regulator BetI YP_133407.1 1901332 R 298386 CDS YP_133408.1 54303415 3121820 1902621..1904669 1 NC_006371.1 sensor histidine kinase/response regulator LuxN 1904669 3121820 PBPRB1748 Photobacterium profundum SS9 sensor histidine kinase/response regulator LuxN YP_133408.1 1902621 D 298386 CDS YP_133409.1 54303416 3121707 complement(1904723..1905904) 1 NC_006371.1 hypothetical protein 1905904 3121707 PBPRB1749 Photobacterium profundum SS9 hypothetical protein YP_133409.1 1904723 R 298386 CDS YP_133410.1 54303417 3121823 complement(1906308..1908041) 1 NC_006371.1 hypothetical protein 1908041 3121823 PBPRB1750 Photobacterium profundum SS9 hypothetical protein YP_133410.1 1906308 R 298386 CDS YP_133411.1 54303418 3121834 complement(1908254..1908601) 1 NC_006371.1 transposase 1908601 3121834 PBPRB1751 Photobacterium profundum SS9 transposase YP_133411.1 1908254 R 298386 CDS YP_133412.1 54303419 3121792 complement(1909133..1909504) 1 NC_006371.1 hypothetical protein 1909504 3121792 PBPRB1752 Photobacterium profundum SS9 hypothetical protein YP_133412.1 1909133 R 298386 CDS YP_133413.1 54303420 3121741 complement(1909519..1910181) 1 NC_006371.1 hypothetical protein 1910181 3121741 PBPRB1753 Photobacterium profundum SS9 hypothetical protein YP_133413.1 1909519 R 298386 CDS YP_133414.1 54303421 3121849 complement(1910345..1916809) 1 NC_006371.1 hypothetical protein 1916809 3121849 PBPRB1754 Photobacterium profundum SS9 hypothetical protein YP_133414.1 1910345 R 298386 CDS YP_133415.1 54303422 3121844 complement(1917353..1918918) 1 NC_006371.1 hypothetical protein 1918918 3121844 PBPRB1755 Photobacterium profundum SS9 hypothetical protein YP_133415.1 1917353 R 298386 CDS YP_133416.1 54303423 3121719 1919328..1920665 1 NC_006371.1 hypothetical protein 1920665 3121719 PBPRB1756 Photobacterium profundum SS9 hypothetical protein YP_133416.1 1919328 D 298386 CDS YP_133417.1 54303424 3121824 1920672..1922921 1 NC_006371.1 hypothetical protein 1922921 3121824 PBPRB1757 Photobacterium profundum SS9 hypothetical protein YP_133417.1 1920672 D 298386 CDS YP_133418.1 54303425 3121768 1922779..1924302 1 NC_006371.1 ABC-transporter outer membrane protein 1924302 3121768 PBPRB1758 Photobacterium profundum SS9 ABC-transporter outer membrane protein YP_133418.1 1922779 D 298386 CDS YP_133419.1 54303426 3121862 1924315..1925925 1 NC_006371.1 hypothetical protein 1925925 3121862 PBPRB1759 Photobacterium profundum SS9 hypothetical protein YP_133419.1 1924315 D 298386 CDS YP_133420.1 54303427 3121779 1925922..1928063 1 NC_006371.1 hypothetical protein 1928063 3121779 PBPRB1760 Photobacterium profundum SS9 hypothetical protein YP_133420.1 1925922 D 298386 CDS YP_133421.1 54303428 3121845 complement(1928264..1929421) 1 NC_006371.1 ATP-dependent RNA helicase 1929421 3121845 PBPRB1761 Photobacterium profundum SS9 ATP-dependent RNA helicase YP_133421.1 1928264 R 298386 CDS YP_133422.1 54303429 3121873 1930056..1930373 1 NC_006371.1 hypothetical protein 1930373 3121873 PBPRB1762 Photobacterium profundum SS9 hypothetical protein YP_133422.1 1930056 D 298386 CDS YP_133423.1 54303430 3121872 1930380..1930805 1 NC_006371.1 hypothetical protein 1930805 3121872 PBPRB1763 Photobacterium profundum SS9 hypothetical protein YP_133423.1 1930380 D 298386 CDS YP_133424.1 54303431 3121783 complement(1930968..1931339) 1 NC_006371.1 hypothetical protein 1931339 3121783 PBPRB1764 Photobacterium profundum SS9 hypothetical protein YP_133424.1 1930968 R 298386 CDS YP_133425.1 54303432 3121771 complement(1931416..1931904) 1 NC_006371.1 hypothetical protein 1931904 3121771 PBPRB1765 Photobacterium profundum SS9 hypothetical protein YP_133425.1 1931416 R 298386 CDS YP_133426.1 54303433 3121802 1932199..1932981 1 NC_006371.1 transposase 1932981 3121802 PBPRB1766 Photobacterium profundum SS9 transposase YP_133426.1 1932199 D 298386 CDS YP_133427.1 54303434 3121921 complement(1933353..1933730) 1 NC_006371.1 hypothetical protein 1933730 3121921 PBPRB1767 Photobacterium profundum SS9 hypothetical protein YP_133427.1 1933353 R 298386 CDS YP_133428.1 54303435 3121722 1934406..1934720 1 NC_006371.1 hypothetical protein 1934720 3121722 PBPRB1769 Photobacterium profundum SS9 hypothetical protein YP_133428.1 1934406 D 298386 CDS YP_133429.1 54303436 3121798 complement(1934817..1936400) 1 NC_006371.1 hypothetical protein 1936400 3121798 PBPRB1770 Photobacterium profundum SS9 hypothetical protein YP_133429.1 1934817 R 298386 CDS YP_133430.1 54303437 3121811 1936948..1937388 1 NC_006371.1 thioredoxin 1937388 3121811 PBPRB1771 Photobacterium profundum SS9 thioredoxin YP_133430.1 1936948 D 298386 CDS YP_133431.1 54303438 3121915 complement(1937662..1938897) 1 NC_006371.1 endoribonuclease L-PSP 1938897 3121915 PBPRB1772 Photobacterium profundum SS9 endoribonuclease L-PSP YP_133431.1 1937662 R 298386 CDS YP_133432.1 54303439 3121904 1939216..1940289 1 NC_006371.1 hypothetical protein 1940289 3121904 PBPRB1773 Photobacterium profundum SS9 hypothetical protein YP_133432.1 1939216 D 298386 CDS YP_133433.1 54303440 3121923 complement(1940304..1940750) 1 NC_006371.1 hypothetical protein 1940750 3121923 PBPRB1774 Photobacterium profundum SS9 hypothetical protein YP_133433.1 1940304 R 298386 CDS YP_133434.1 54303441 3121858 complement(1940838..1941539) 1 NC_006371.1 hypothetical protein 1941539 3121858 PBPRB1775 Photobacterium profundum SS9 hypothetical protein YP_133434.1 1940838 R 298386 CDS YP_133435.1 54303442 3121931 1941809..1942702 1 NC_006371.1 transcriptional regulator 1942702 3121931 PBPRB1776 Photobacterium profundum SS9 transcriptional regulator YP_133435.1 1941809 D 298386 CDS YP_133436.1 54303443 3121713 complement(1942803..1943891) 1 NC_006371.1 transposase 1943891 3121713 PBPRB1777 Photobacterium profundum SS9 transposase YP_133436.1 1942803 R 298386 CDS YP_133437.1 54303444 3121805 1944232..1944681 1 NC_006371.1 hypothetical protein 1944681 3121805 PBPRB1778 Photobacterium profundum SS9 hypothetical protein YP_133437.1 1944232 D 298386 CDS YP_133438.1 54303445 3121903 complement(1945145..1945459) 1 NC_006371.1 cold shock protein 1945459 3121903 PBPRB1779 Photobacterium profundum SS9 cold shock protein YP_133438.1 1945145 R 298386 CDS YP_133439.1 54303446 3121706 complement(1945696..1947081) 1 NC_006371.1 transposase 1947081 3121706 PBPRB1780 Photobacterium profundum SS9 transposase YP_133439.1 1945696 R 298386 CDS YP_133440.1 54303447 3121822 1947257..1947727 1 NC_006371.1 transposase 1947727 3121822 PBPRB1781 Photobacterium profundum SS9 transposase YP_133440.1 1947257 D 298386 CDS YP_133441.1 54303448 3121765 1947729..1948292 1 NC_006371.1 transposase 1948292 3121765 PBPRB1782 Photobacterium profundum SS9 transposase YP_133441.1 1947729 D 298386 CDS YP_133442.1 54303449 3121874 complement(1948663..1949010) 1 NC_006371.1 transposase 1949010 3121874 PBPRB1783 Photobacterium profundum SS9 transposase YP_133442.1 1948663 R 298386 CDS YP_133443.1 54303450 3121909 complement(1949259..1950188) 1 NC_006371.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 1950188 3121909 PBPRB1784 Photobacterium profundum SS9 carbamate kinase YP_133443.1 1949259 R 298386 CDS YP_133444.1 54303451 3121817 complement(1951038..1951862) 1 NC_006371.1 adenylosuccinate synthase 1951862 3121817 PBPRB1785 Photobacterium profundum SS9 adenylosuccinate synthase YP_133444.1 1951038 R 298386 CDS YP_133445.1 54303452 3121799 complement(1952035..1952292) 1 NC_006371.1 adenylosuccinate synthase 1952292 3121799 PBPRB1786 Photobacterium profundum SS9 adenylosuccinate synthase YP_133445.1 1952035 R 298386 CDS YP_133446.1 54303453 3121797 1952394..1953284 1 NC_006371.1 transcriptional regulator 1953284 3121797 PBPRB1787 Photobacterium profundum SS9 transcriptional regulator YP_133446.1 1952394 D 298386 CDS YP_133447.1 54303454 3121827 complement(1953385..1954668) 1 NC_006371.1 glycine betaine ABC transporter ATP-binding protein 1954668 3121827 PBPRB1788 Photobacterium profundum SS9 glycine betaine ABC transporter ATP-binding protein YP_133447.1 1953385 R 298386 CDS YP_133448.1 54303455 3121893 complement(1954670..1955560) 1 NC_006371.1 permease 1955560 3121893 PBPRB1789 Photobacterium profundum SS9 permease YP_133448.1 1954670 R 298386 CDS YP_133449.1 54303456 3121913 complement(1955621..1956619) 1 NC_006371.1 ABC transporter substrate-binding protein 1956619 3121913 PBPRB1790 Photobacterium profundum SS9 ABC transporter substrate-binding protein YP_133449.1 1955621 R 298386 CDS YP_133450.1 54303457 3121747 1957013..1957822 1 NC_006371.1 hypothetical protein 1957822 3121747 PBPRB1791 Photobacterium profundum SS9 hypothetical protein YP_133450.1 1957013 D 298386 CDS YP_133451.1 54303458 3121871 1957954..1959126 1 NC_006371.1 hypothetical protein 1959126 3121871 PBPRB1792 Photobacterium profundum SS9 hypothetical protein YP_133451.1 1957954 D 298386 CDS YP_133452.1 54303459 3120710 1959116..1960183 1 NC_006371.1 hypothetical protein 1960183 3120710 PBPRB1793 Photobacterium profundum SS9 hypothetical protein YP_133452.1 1959116 D 298386 CDS YP_133453.1 54303460 3121077 complement(1960275..1961159) 1 NC_006371.1 hypothetical protein 1961159 3121077 PBPRB1794 Photobacterium profundum SS9 hypothetical protein YP_133453.1 1960275 R 298386 CDS YP_133454.1 54303461 3120969 complement(1961433..1962668) 1 NC_006371.1 hypothetical protein 1962668 3120969 PBPRB1795 Photobacterium profundum SS9 hypothetical protein YP_133454.1 1961433 R 298386 CDS YP_133455.1 54303462 3120872 complement(1962748..1963287) 1 NC_006371.1 hypothetical protein 1963287 3120872 PBPRB1796 Photobacterium profundum SS9 hypothetical protein YP_133455.1 1962748 R 298386 CDS YP_133456.1 54303463 3121121 complement(1963312..1964508) 1 NC_006371.1 hypothetical protein 1964508 3121121 PBPRB1797 Photobacterium profundum SS9 hypothetical protein YP_133456.1 1963312 R 298386 CDS YP_133457.1 54303464 3121108 1964845..1965585 1 NC_006371.1 hypothetical protein 1965585 3121108 PBPRB1798 Photobacterium profundum SS9 hypothetical protein YP_133457.1 1964845 D 298386 CDS YP_133458.1 54303465 3121095 1965654..1965911 1 NC_006371.1 hypothetical protein 1965911 3121095 PBPRB1799 Photobacterium profundum SS9 hypothetical protein YP_133458.1 1965654 D 298386 CDS YP_133459.1 54303466 3121071 1967435..1967815 1 NC_006371.1 hypothetical protein 1967815 3121071 PBPRB1801 Photobacterium profundum SS9 hypothetical protein YP_133459.1 1967435 D 298386 CDS YP_133460.1 54303467 3121043 complement(1967841..1968719) 1 NC_006371.1 LysR family transcriptional regulator 1968719 3121043 PBPRB1802 Photobacterium profundum SS9 LysR family transcriptional regulator YP_133460.1 1967841 R 298386 CDS YP_133461.1 54303468 3121039 1968909..1969784 1 NC_006371.1 hypothetical protein 1969784 3121039 PBPRB1803 Photobacterium profundum SS9 hypothetical protein YP_133461.1 1968909 D 298386 CDS YP_133462.1 54303469 3121030 1969800..1970312 1 NC_006371.1 hypothetical protein 1970312 3121030 PBPRB1804 Photobacterium profundum SS9 hypothetical protein YP_133462.1 1969800 D 298386 CDS YP_133463.1 54303470 3121023 1970761..1971048 1 NC_006371.1 hypothetical protein 1971048 3121023 PBPRB1805 Photobacterium profundum SS9 hypothetical protein YP_133463.1 1970761 D 298386 CDS YP_133464.1 54303471 3121018 complement(1971416..1971658) 1 NC_006371.1 hypothetical protein 1971658 3121018 PBPRB1806 Photobacterium profundum SS9 hypothetical protein YP_133464.1 1971416 R 298386 CDS YP_133465.1 54303472 3121016 complement(1971863..1972819) 1 NC_006371.1 hypothetical protein 1972819 3121016 PBPRB1807 Photobacterium profundum SS9 hypothetical protein YP_133465.1 1971863 R 298386 CDS YP_133466.1 54303473 3121015 1974538..1975230 1 NC_006371.1 lipoate-protein ligase A 1975230 3121015 PBPRB1808 Photobacterium profundum SS9 lipoate-protein ligase A YP_133466.1 1974538 D 298386 CDS YP_133467.1 54303474 3121011 complement(1975257..1975643) 1 NC_006371.1 hypothetical protein 1975643 3121011 PBPRB1809 Photobacterium profundum SS9 hypothetical protein YP_133467.1 1975257 R 298386 CDS YP_133468.1 54303475 3121008 complement(1975864..1976691) 1 NC_006371.1 cation-efflux family protein 1976691 3121008 PBPRB1810 Photobacterium profundum SS9 cation-efflux family protein YP_133468.1 1975864 R 298386 CDS YP_133469.1 54303476 3121002 complement(1976959..1977192) 1 NC_006371.1 hypothetical protein 1977192 3121002 PBPRB1811 Photobacterium profundum SS9 hypothetical protein YP_133469.1 1976959 R 298386 CDS YP_133470.1 54303477 3121000 1977782..1978603 1 NC_006371.1 hypothetical protein 1978603 3121000 PBPRB1812 Photobacterium profundum SS9 hypothetical protein YP_133470.1 1977782 D 298386 CDS YP_133471.1 54303478 3120999 1978686..1979768 1 NC_006371.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose-4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase 1979768 3120999 PBPRB1813 Photobacterium profundum SS9 phospho-2-dehydro-3-deoxyheptonate aldolase YP_133471.1 1978686 D 298386 CDS YP_133472.1 54303479 3120984 complement(1979940..1980731) 1 NC_006371.1 iron-siderophoreabc-transporter ATP-binding protein 1980731 3120984 PBPRB1814 Photobacterium profundum SS9 iron-siderophoreabc-transporter ATP-binding protein YP_133472.1 1979940 R 298386 CDS YP_133473.1 54303480 3120983 complement(1980731..1981846) 1 NC_006371.1 permease 1981846 3120983 PBPRB1815 Photobacterium profundum SS9 permease YP_133473.1 1980731 R 298386 CDS YP_133474.1 54303481 3120980 complement(1981857..1982873) 1 NC_006371.1 permease 1982873 3120980 PBPRB1816 Photobacterium profundum SS9 permease YP_133474.1 1981857 R 298386 CDS YP_133475.1 54303482 3120978 1983043..1983993 1 NC_006371.1 hypothetical protein 1983993 3120978 PBPRB1817 Photobacterium profundum SS9 hypothetical protein YP_133475.1 1983043 D 298386 CDS YP_133476.1 54303483 3120970 complement(1984126..1986498) 1 NC_006371.1 hypothetical protein 1986498 3120970 PBPRB1818 Photobacterium profundum SS9 hypothetical protein YP_133476.1 1984126 R 298386 CDS YP_133477.1 54303484 3120963 complement(1986488..1992994) 1 NC_006371.1 peptide synthetase 1992994 3120963 PBPRB1819 Photobacterium profundum SS9 peptide synthetase YP_133477.1 1986488 R 298386 CDS YP_133478.1 54303485 3120961 complement(1993058..1993747) 1 NC_006371.1 catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin; 2,3-dihydroxybenzoate-2,3-dehydrogenase 1993747 3120961 PBPRB1820 Photobacterium profundum SS9 2,3-dihydroxybenzoate-2,3-dehydrogenase YP_133478.1 1993058 R 298386 CDS YP_133479.1 54303486 3120950 complement(1993831..1996989) 1 NC_006371.1 hypothetical protein 1996989 3120950 PBPRB1821 Photobacterium profundum SS9 hypothetical protein YP_133479.1 1993831 R 298386 CDS YP_133480.1 54303487 3120936 complement(1997079..1997951) 1 NC_006371.1 2,3-dihydro-2,3-dihydroxybenzoatesynthetase, isochorismatase 1997951 3120936 PBPRB1822 Photobacterium profundum SS9 2,3-dihydro-2,3-dihydroxybenzoatesynthetase, isochorismatase YP_133480.1 1997079 R 298386 CDS YP_133481.1 54303488 3120930 complement(1997954..1999609) 1 NC_006371.1 bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate; enterobactin synthase subunit E 1999609 entE 3120930 entE Photobacterium profundum SS9 enterobactin synthase subunit E YP_133481.1 1997954 R 298386 CDS YP_133482.1 54303489 3120920 complement(1999606..2000805) 1 NC_006371.1 synthesizes isochorismate acid from chorismate; isochorismate synthase 2000805 3120920 PBPRB1824 Photobacterium profundum SS9 isochorismate synthase YP_133482.1 1999606 R 298386 CDS YP_133483.1 54303490 3120915 complement(2001039..2002988) 1 NC_006371.1 hypothetical protein 2002988 3120915 PBPRB1825 Photobacterium profundum SS9 hypothetical protein YP_133483.1 2001039 R 298386 CDS YP_133484.1 54303491 3120889 complement(2003183..2004319) 1 NC_006371.1 hypothetical protein 2004319 3120889 PBPRB1826 Photobacterium profundum SS9 hypothetical protein YP_133484.1 2003183 R 298386 CDS YP_133485.1 54303492 3120868 complement(2004491..2005183) 1 NC_006371.1 phosphopantetheinyl transferase 2005183 3120868 PBPRB1827 Photobacterium profundum SS9 phosphopantetheinyl transferase YP_133485.1 2004491 R 298386 CDS YP_133486.1 54303493 3120861 2005452..2005865 1 NC_006371.1 transposase 2005865 3120861 PBPRB1828 Photobacterium profundum SS9 transposase YP_133486.1 2005452 D 298386 CDS YP_133487.1 54303494 3120833 2006086..2006412 1 NC_006371.1 transposase 2006412 3120833 PBPRB1829 Photobacterium profundum SS9 transposase YP_133487.1 2006086 D 298386 CDS YP_133488.1 54303495 3120698 complement(2013044..2014861) 1 NC_006371.1 polyhydroxyalkanoic acid synthase 2014861 3120698 PBPRB1838 Photobacterium profundum SS9 polyhydroxyalkanoic acid synthase YP_133488.1 2013044 R 298386 CDS YP_133489.1 54303496 3120517 complement(2014927..2015280) 1 NC_006371.1 hypothetical protein 2015280 3120517 PBPRB1839 Photobacterium profundum SS9 hypothetical protein YP_133489.1 2014927 R 298386 CDS YP_133490.1 54303497 3120593 complement(2015376..2016470) 1 NC_006371.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase 2016470 3120593 PBPRB1840 Photobacterium profundum SS9 acetyl-CoA acetyltransferase YP_133490.1 2015376 R 298386 CDS YP_133491.2 161936343 3120588 complement(2016641..2017381) 1 NC_006371.1 catalyzes the conversion of 3-hydroxyacyl-CoA to 3-oxyacyl-CoA; acetoacetyl-CoA reductase 2017381 3120588 PBPRB1841 Photobacterium profundum SS9 acetoacetyl-CoA reductase YP_133491.2 2016641 R 298386 CDS YP_133492.1 54303499 3120683 2018517..2019542 1 NC_006371.1 MoxR-like ATPase 2019542 3120683 PBPRB1842 Photobacterium profundum SS9 MoxR-like ATPase YP_133492.1 2018517 D 298386 CDS YP_133493.1 54303500 3120538 2019587..2020525 1 NC_006371.1 hypothetical protein 2020525 3120538 PBPRB1843 Photobacterium profundum SS9 hypothetical protein YP_133493.1 2019587 D 298386 CDS YP_133494.1 54303501 3120676 2020518..2021090 1 NC_006371.1 hypothetical protein 2021090 3120676 PBPRB1844 Photobacterium profundum SS9 hypothetical protein YP_133494.1 2020518 D 298386 CDS YP_133495.1 54303502 3120700 2021083..2022048 1 NC_006371.1 hypothetical protein 2022048 3120700 PBPRB1845 Photobacterium profundum SS9 hypothetical protein YP_133495.1 2021083 D 298386 CDS YP_133496.1 54303503 3120558 2022041..2023987 1 NC_006371.1 hypothetical protein 2023987 3120558 PBPRB1846 Photobacterium profundum SS9 hypothetical protein YP_133496.1 2022041 D 298386 CDS YP_133497.1 54303504 3120364 2023965..2025692 1 NC_006371.1 hypothetical protein 2025692 3120364 PBPRB1847 Photobacterium profundum SS9 hypothetical protein YP_133497.1 2023965 D 298386 CDS YP_133498.1 54303505 3120528 2025969..2027204 1 NC_006371.1 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 2027204 3120528 PBPRB1848 Photobacterium profundum SS9 serine/threonine transporter SstT YP_133498.1 2025969 D 298386 CDS YP_133499.1 54303506 3120379 2027577..2028851 1 NC_006371.1 hypothetical protein 2028851 3120379 PBPRB1849 Photobacterium profundum SS9 hypothetical protein YP_133499.1 2027577 D 298386 CDS YP_133500.1 54303507 3120426 2028839..2029924 1 NC_006371.1 amino acid racemase 2029924 3120426 PBPRB1850 Photobacterium profundum SS9 amino acid racemase YP_133500.1 2028839 D 298386 CDS YP_133501.1 54303508 3120464 complement(2030335..2031531) 1 NC_006371.1 hypothetical protein 2031531 3120464 PBPRB1851 Photobacterium profundum SS9 hypothetical protein YP_133501.1 2030335 R 298386 CDS YP_133502.1 54303509 3120563 complement(2032037..2032372) 1 NC_006371.1 hypothetical protein 2032372 3120563 PBPRB1852 Photobacterium profundum SS9 hypothetical protein YP_133502.1 2032037 R 298386 CDS YP_133503.1 54303510 3120585 complement(2032741..2033982) 1 NC_006371.1 NifS-related protein 2033982 3120585 PBPRB1853 Photobacterium profundum SS9 NifS-related protein YP_133503.1 2032741 R 298386 CDS YP_133504.1 54303511 3120654 complement(2033966..2034622) 1 NC_006371.1 hypothetical protein 2034622 3120654 PBPRB1854 Photobacterium profundum SS9 hypothetical protein YP_133504.1 2033966 R 298386 CDS YP_133505.1 54303512 3120358 complement(2035121..2035492) 1 NC_006371.1 hypothetical protein 2035492 3120358 PBPRB1855 Photobacterium profundum SS9 hypothetical protein YP_133505.1 2035121 R 298386 CDS YP_133506.1 54303513 3120448 complement(2035870..2036640) 1 NC_006371.1 permease 2036640 3120448 PBPRB1856 Photobacterium profundum SS9 permease YP_133506.1 2035870 R 298386 CDS YP_133507.1 54303514 3120532 complement(2036633..2037322) 1 NC_006371.1 hypothetical protein 2037322 3120532 PBPRB1857 Photobacterium profundum SS9 hypothetical protein YP_133507.1 2036633 R 298386 CDS YP_133508.1 54303515 3120530 complement(2037558..2037767) 1 NC_006371.1 cold shock-like protein 2037767 3120530 PBPRB1858 Photobacterium profundum SS9 cold shock-like protein YP_133508.1 2037558 R 298386 CDS YP_133509.1 54303516 3120509 complement(2038237..2038797) 1 NC_006371.1 hypothetical protein 2038797 3120509 PBPRB1859 Photobacterium profundum SS9 hypothetical protein YP_133509.1 2038237 R 298386 CDS YP_133510.1 54303517 3120631 complement(2038905..2039825) 1 NC_006371.1 transcriptional regulator 2039825 3120631 PBPRB1860 Photobacterium profundum SS9 transcriptional regulator YP_133510.1 2038905 R 298386 CDS YP_133511.1 54303518 3120653 2039906..2041342 1 NC_006371.1 hypothetical protein 2041342 3120653 PBPRB1861 Photobacterium profundum SS9 hypothetical protein YP_133511.1 2039906 D 298386 CDS YP_133512.1 54303519 3120339 2041354..2042499 1 NC_006371.1 multidrug resistance protein 2042499 3120339 PBPRB1862 Photobacterium profundum SS9 multidrug resistance protein YP_133512.1 2041354 D 298386 CDS YP_133513.1 54303520 3120478 2042512..2044050 1 NC_006371.1 multidrug transport protein 2044050 3120478 PBPRB1863 Photobacterium profundum SS9 multidrug transport protein YP_133513.1 2042512 D 298386 CDS YP_133514.1 54303521 3120343 complement(2044343..2044975) 1 NC_006371.1 hypothetical protein 2044975 3120343 PBPRB1864 Photobacterium profundum SS9 hypothetical protein YP_133514.1 2044343 R 298386 CDS YP_133515.1 54303522 3120440 complement(2045104..2046606) 1 NC_006371.1 transport protein 2046606 3120440 PBPRB1865 Photobacterium profundum SS9 transport protein YP_133515.1 2045104 R 298386 CDS YP_133516.1 54303523 3120431 2047236..2048639 1 NC_006371.1 methyl-accepting chemotaxis protein 2048639 3120431 PBPRB1866 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_133516.1 2047236 D 298386 CDS YP_133517.1 54303524 3120402 complement(2048739..2049188) 1 NC_006371.1 hypothetical protein 2049188 3120402 PBPRB1867 Photobacterium profundum SS9 hypothetical protein YP_133517.1 2048739 R 298386 CDS YP_133518.1 54303525 3120384 2049559..2051556 1 NC_006371.1 chemotaxis transducer 2051556 3120384 PBPRB1868 Photobacterium profundum SS9 chemotaxis transducer YP_133518.1 2049559 D 298386 CDS YP_133519.1 54303526 3120416 complement(2051656..2053389) 1 NC_006371.1 methyl-accepting chemotaxis protein 2053389 3120416 PBPRB1869 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_133519.1 2051656 R 298386 CDS YP_133520.1 54303527 3120554 complement(2053465..2054475) 1 NC_006371.1 ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; beta-methylgalactoside transporter inner membrane component 2054475 mglC 3120554 mglC Photobacterium profundum SS9 beta-methylgalactoside transporter inner membrane component YP_133520.1 2053465 R 298386 CDS YP_133521.1 54303528 3120505 complement(2054488..2055963) 1 NC_006371.1 with MglBC transports galactose or methyl galactoside into the cell; contains 2 ATP binding domains; galactose/methyl galaxtoside transporter ATP-binding protein 2055963 3120505 PBPRB1871 Photobacterium profundum SS9 galactose/methyl galaxtoside transporter ATP-binding protein YP_133521.1 2054488 R 298386 CDS YP_133522.1 54303529 3120639 complement(2056066..2057043) 1 NC_006371.1 galactoside ABC transporter, periplasmic D-galactose/D-glucose-binding protein 2057043 3120639 PBPRB1872 Photobacterium profundum SS9 galactoside ABC transporter, periplasmic D-galactose/D-glucose-binding protein YP_133522.1 2056066 R 298386 CDS YP_133523.1 54303530 3120420 2057876..2058361 1 NC_006371.1 acyl-CoA thioester hydrolase 2058361 3120420 PBPRB1873 Photobacterium profundum SS9 acyl-CoA thioester hydrolase YP_133523.1 2057876 D 298386 CDS YP_133524.1 54303531 3120501 complement(2058462..2059646) 1 NC_006371.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 2059646 3120501 PBPRB1874 Photobacterium profundum SS9 mannonate dehydratase YP_133524.1 2058462 R 298386 CDS YP_133525.1 54303532 3120325 complement(2059773..2060456) 1 NC_006371.1 transcriptional regulatory protein 2060456 3120325 PBPRB1875 Photobacterium profundum SS9 transcriptional regulatory protein YP_133525.1 2059773 R 298386 CDS YP_133526.1 54303533 3120552 complement(2060663..2061097) 1 NC_006371.1 C4-dicarboxylate transport system, periplasmic component 2061097 3120552 PBPRB1876 Photobacterium profundum SS9 C4-dicarboxylate transport system, periplasmic component YP_133526.1 2060663 R 298386 CDS YP_133527.1 54303534 3120424 complement(2061358..2061717) 1 NC_006371.1 dicarboxylate-binding periplasmic protein 2061717 3120424 PBPRB1877 Photobacterium profundum SS9 dicarboxylate-binding periplasmic protein YP_133527.1 2061358 R 298386 CDS YP_133528.1 54303535 3120457 2061946..2062455 1 NC_006371.1 small integral C4-dicarboxylate membrane transport protein 2062455 3120457 PBPRB1878 Photobacterium profundum SS9 small integral C4-dicarboxylate membrane transport protein YP_133528.1 2061946 D 298386 CDS YP_133529.1 54303536 3120492 2062481..2063782 1 NC_006371.1 C4-dicarboxylate transport system, integral membrane protein 2063782 3120492 PBPRB1879 Photobacterium profundum SS9 C4-dicarboxylate transport system, integral membrane protein YP_133529.1 2062481 D 298386 CDS YP_133530.1 54303537 3120652 2063865..2065328 1 NC_006371.1 mannonate oxidoreductase 2065328 3120652 PBPRB1880 Photobacterium profundum SS9 mannonate oxidoreductase YP_133530.1 2063865 D 298386 CDS YP_133531.1 54303538 3120640 2066808..2067779 1 NC_006371.1 carbohydrate kinase 2067779 3120640 PBPRB1882 Photobacterium profundum SS9 carbohydrate kinase YP_133531.1 2066808 D 298386 CDS YP_133532.1 54303539 3120466 2067793..2068419 1 NC_006371.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 2068419 3120466 PBPRB1883 Photobacterium profundum SS9 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_133532.1 2067793 D 298386 CDS YP_133533.1 54303540 3120536 2068704..2069210 1 NC_006371.1 hypothetical protein 2069210 3120536 PBPRB1884 Photobacterium profundum SS9 hypothetical protein YP_133533.1 2068704 D 298386 CDS YP_133534.1 54303541 3120648 complement(2069337..2069729) 1 NC_006371.1 hypothetical protein 2069729 3120648 PBPRB1885 Photobacterium profundum SS9 hypothetical protein YP_133534.1 2069337 R 298386 CDS YP_133535.1 54303542 3120690 complement(2070008..2070475) 1 NC_006371.1 hypothetical protein 2070475 3120690 PBPRB1886 Photobacterium profundum SS9 hypothetical protein YP_133535.1 2070008 R 298386 CDS YP_133536.1 54303543 3120504 complement(2070690..2072093) 1 NC_006371.1 C4-dicarboxylate transport protein 2072093 3120504 PBPRB1887 Photobacterium profundum SS9 C4-dicarboxylate transport protein YP_133536.1 2070690 R 298386 CDS YP_133537.1 54303544 3120540 complement(2072096..2072656) 1 NC_006371.1 C4-dicarboxylate transporter, small permease component 2072656 3120540 PBPRB1888 Photobacterium profundum SS9 C4-dicarboxylate transporter, small permease component YP_133537.1 2072096 R 298386 CDS YP_133538.1 54303545 3120447 complement(2072714..2073700) 1 NC_006371.1 C4-dicarboxylate-binding periplasmic protein 2073700 3120447 PBPRB1889 Photobacterium profundum SS9 C4-dicarboxylate-binding periplasmic protein YP_133538.1 2072714 R 298386 CDS YP_133539.1 54303546 3120637 complement(2074108..2074716) 1 NC_006371.1 hypothetical protein 2074716 3120637 PBPRB1890 Photobacterium profundum SS9 hypothetical protein YP_133539.1 2074108 R 298386 CDS YP_133540.1 54303547 3120355 2074797..2075717 1 NC_006371.1 transcriptional regulator 2075717 3120355 PBPRB1891 Photobacterium profundum SS9 transcriptional regulator YP_133540.1 2074797 D 298386 CDS YP_133541.1 54303548 3120369 complement(2075806..2077788) 1 NC_006371.1 hypothetical protein 2077788 3120369 PBPRB1892 Photobacterium profundum SS9 hypothetical protein YP_133541.1 2075806 R 298386 CDS YP_133542.1 54303549 3120680 2078134..2078796 1 NC_006371.1 hypothetical protein 2078796 3120680 PBPRB1893 Photobacterium profundum SS9 hypothetical protein YP_133542.1 2078134 D 298386 CDS YP_133543.1 54303550 3120407 2079011..2081977 1 NC_006371.1 hypothetical protein 2081977 3120407 PBPRB1894 Photobacterium profundum SS9 hypothetical protein YP_133543.1 2079011 D 298386 CDS YP_133544.1 54303551 3120663 complement(2082919..2084274) 1 NC_006371.1 ferredoxin oxidoreductase 2084274 3120663 PBPRB1895 Photobacterium profundum SS9 ferredoxin oxidoreductase YP_133544.1 2082919 R 298386 CDS YP_133545.1 54303552 3120642 complement(2084441..2086105) 1 NC_006371.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 2086105 3120642 PBPRB1896 Photobacterium profundum SS9 hydroxylamine reductase YP_133545.1 2084441 R 298386 CDS YP_133546.1 54303553 3120599 complement(2086293..2087861) 1 NC_006371.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcription regulator 2087861 3120599 PBPRB1897 Photobacterium profundum SS9 anaerobic nitric oxide reductase transcription regulator YP_133546.1 2086293 R 298386 CDS YP_133547.1 54303554 3120529 2089371..2090273 1 NC_006371.1 hypothetical protein 2090273 3120529 PBPRB1899 Photobacterium profundum SS9 hypothetical protein YP_133547.1 2089371 D 298386 CDS YP_133548.1 54303555 3120573 2090375..2091613 1 NC_006371.1 hypothetical protein 2091613 3120573 PBPRB1900 Photobacterium profundum SS9 hypothetical protein YP_133548.1 2090375 D 298386 CDS YP_133549.1 54303556 3120436 complement(2091872..2092798) 1 NC_006371.1 glycine cleavage operon activator 2092798 3120436 PBPRB1901 Photobacterium profundum SS9 glycine cleavage operon activator YP_133549.1 2091872 R 298386 CDS YP_133550.1 54303557 3120616 2092891..2093814 1 NC_006371.1 hypothetical protein 2093814 3120616 PBPRB1902 Photobacterium profundum SS9 hypothetical protein YP_133550.1 2092891 D 298386 CDS YP_133551.1 54303558 3120580 2094180..2095859 1 NC_006371.1 hypothetical protein 2095859 3120580 PBPRB1903 Photobacterium profundum SS9 hypothetical protein YP_133551.1 2094180 D 298386 CDS YP_133552.1 54303559 3120586 complement(2096141..2098144) 1 NC_006371.1 ferrous ion transport protein B 2098144 3120586 PBPRB1904 Photobacterium profundum SS9 ferrous ion transport protein B YP_133552.1 2096141 R 298386 CDS YP_133553.1 54303560 3120488 complement(2098302..2098586) 1 NC_006371.1 hypothetical protein 2098586 3120488 PBPRB1905 Photobacterium profundum SS9 hypothetical protein YP_133553.1 2098302 R 298386 CDS YP_133554.1 54303561 3120572 complement(2099081..2100343) 1 NC_006371.1 ABC-type sugar transport system, periplasmic component 2100343 3120572 PBPRB1906 Photobacterium profundum SS9 ABC-type sugar transport system, periplasmic component YP_133554.1 2099081 R 298386 CDS YP_133555.1 54303562 3120617 complement(2100428..2101867) 1 NC_006371.1 Signal transduction histidine kinase 2101867 3120617 PBPRB1907 Photobacterium profundum SS9 Signal transduction histidine kinase YP_133555.1 2100428 R 298386 CDS YP_133556.1 54303563 3120645 complement(2102019..2102744) 1 NC_006371.1 DNA-binding response regulator 2102744 3120645 PBPRB1908 Photobacterium profundum SS9 DNA-binding response regulator YP_133556.1 2102019 R 298386 CDS YP_133557.1 54303564 3120425 2103416..2103772 1 NC_006371.1 ribosomal subunit interface protein 2103772 3120425 PBPRB1909 Photobacterium profundum SS9 ribosomal subunit interface protein YP_133557.1 2103416 D 298386 CDS YP_133558.1 54303565 3120441 complement(2103908..2104357) 1 NC_006371.1 Lrp/AsnC-like transcriptional regulator 2104357 3120441 PBPRB1910 Photobacterium profundum SS9 Lrp/AsnC-like transcriptional regulator YP_133558.1 2103908 R 298386 CDS YP_133559.1 54303566 3120592 2104574..2105452 1 NC_006371.1 hypothetical protein 2105452 3120592 PBPRB1911 Photobacterium profundum SS9 hypothetical protein YP_133559.1 2104574 D 298386 CDS YP_133560.1 54303567 3120340 2105599..2106954 1 NC_006371.1 sensor protein 2106954 3120340 PBPRB1912 Photobacterium profundum SS9 sensor protein YP_133560.1 2105599 D 298386 CDS YP_133561.1 54303568 3120371 2106951..2107250 1 NC_006371.1 sensor protein 2107250 3120371 PBPRB1913 Photobacterium profundum SS9 sensor protein YP_133561.1 2106951 D 298386 CDS YP_133562.1 54303569 3120553 2107261..2107983 1 NC_006371.1 two component transcriptional regulator 2107983 3120553 PBPRB1914 Photobacterium profundum SS9 two component transcriptional regulator YP_133562.1 2107261 D 298386 CDS YP_133563.1 54303570 3120400 2108142..2109356 1 NC_006371.1 resistance protein, yhjX 2109356 3120400 PBPRB1915 Photobacterium profundum SS9 resistance protein, yhjX YP_133563.1 2108142 D 298386 CDS YP_133564.1 54303571 3120470 complement(2109446..2110210) 1 NC_006371.1 hypothetical protein 2110210 3120470 PBPRB1916 Photobacterium profundum SS9 hypothetical protein YP_133564.1 2109446 R 298386 CDS YP_133565.1 54303572 3120460 complement(2110572..2111963) 1 NC_006371.1 amino acid permease 2111963 3120460 PBPRB1917 Photobacterium profundum SS9 amino acid permease YP_133565.1 2110572 R 298386 CDS YP_133566.1 54303573 3120458 2112280..2113194 1 NC_006371.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 2113194 3120458 PBPRB1918 Photobacterium profundum SS9 carbamate kinase YP_133566.1 2112280 D 298386 CDS YP_133567.1 54303574 3120468 2113285..2113908 1 NC_006371.1 transcriptional regulator 2113908 3120468 PBPRB1919 Photobacterium profundum SS9 transcriptional regulator YP_133567.1 2113285 D 298386 CDS YP_133568.1 54303575 3120609 2113982..2114236 1 NC_006371.1 hypothetical protein 2114236 3120609 PBPRB1920 Photobacterium profundum SS9 hypothetical protein YP_133568.1 2113982 D 298386 CDS YP_133569.1 54303576 3120399 2114326..2115372 1 NC_006371.1 catalyzes the formation of putrescine from carbamoyl-putrescine during agmatine degradation; putrescine carbamoyltransferase 2115372 3120399 PBPRB1921 Photobacterium profundum SS9 putrescine carbamoyltransferase YP_133569.1 2114326 D 298386 CDS YP_133570.1 54303577 3120578 complement(2116364..2116762) 1 NC_006371.1 lipoprotein 2116762 3120578 PBPRB1923 Photobacterium profundum SS9 lipoprotein YP_133570.1 2116364 R 298386 CDS YP_133571.1 54303578 3120581 2117137..2118138 1 NC_006371.1 ornithine carbamoyltransferase 2118138 3120581 PBPRB1924 Photobacterium profundum SS9 ornithine carbamoyltransferase YP_133571.1 2117137 D 298386 CDS YP_133572.1 54303579 3120655 2118893..2119597 1 NC_006371.1 hypothetical protein 2119597 3120655 PBPRB1925 Photobacterium profundum SS9 hypothetical protein YP_133572.1 2118893 D 298386 CDS YP_133573.1 54303580 3120493 complement(2120102..2120407) 1 NC_006371.1 hypothetical protein 2120407 3120493 PBPRB1926 Photobacterium profundum SS9 hypothetical protein YP_133573.1 2120102 R 298386 CDS YP_133574.1 54303581 3120438 complement(2120869..2121255) 1 NC_006371.1 transposase 2121255 3120438 PBPRB1927 Photobacterium profundum SS9 transposase YP_133574.1 2120869 R 298386 CDS YP_133575.1 54303582 3120575 2121649..2122290 1 NC_006371.1 hypothetical protein 2122290 3120575 PBPRB1928 Photobacterium profundum SS9 hypothetical protein YP_133575.1 2121649 D 298386 CDS YP_133576.1 54303583 3120535 complement(2122849..2123058) 1 NC_006371.1 cold shock-like protein 2123058 3120535 PBPRB1929 Photobacterium profundum SS9 cold shock-like protein YP_133576.1 2122849 R 298386 CDS YP_133577.1 54303584 3120351 complement(2123387..2123578) 1 NC_006371.1 hypothetical protein 2123578 3120351 PBPRB1930 Photobacterium profundum SS9 hypothetical protein YP_133577.1 2123387 R 298386 CDS YP_133578.1 54303585 3120387 complement(2123686..2124681) 1 NC_006371.1 lysophospholipase L2 2124681 3120387 PBPRB1931 Photobacterium profundum SS9 lysophospholipase L2 YP_133578.1 2123686 R 298386 CDS YP_133579.1 54303586 3120388 complement(2124691..2125572) 1 NC_006371.1 hypothetical protein 2125572 3120388 PBPRB1932 Photobacterium profundum SS9 hypothetical protein YP_133579.1 2124691 R 298386 CDS YP_133580.1 54303587 3120668 complement(2125900..2126247) 1 NC_006371.1 YjgF family translation initiation inhibitor 2126247 3120668 PBPRB1933 Photobacterium profundum SS9 YjgF family translation initiation inhibitor YP_133580.1 2125900 R 298386 CDS YP_133581.1 54303588 3120411 2126476..2126826 1 NC_006371.1 cytochrome c 2126826 3120411 PBPRB1934 Photobacterium profundum SS9 cytochrome c YP_133581.1 2126476 D 298386 CDS YP_133582.1 54303589 3120393 complement(2126970..2127443) 1 NC_006371.1 acetyltransferase 2127443 3120393 PBPRB1935 Photobacterium profundum SS9 acetyltransferase YP_133582.1 2126970 R 298386 CDS YP_133583.1 54303590 3120370 complement(2127887..2129854) 1 NC_006371.1 hypothetical protein 2129854 3120370 PBPRB1936 Photobacterium profundum SS9 hypothetical protein YP_133583.1 2127887 R 298386 CDS YP_133584.1 54303591 3120596 complement(2129983..2130522) 1 NC_006371.1 hypothetical protein 2130522 3120596 PBPRB1937 Photobacterium profundum SS9 hypothetical protein YP_133584.1 2129983 R 298386 CDS YP_133585.1 54303592 3120450 complement(2130558..2131178) 1 NC_006371.1 hypothetical protein 2131178 3120450 PBPRB1938 Photobacterium profundum SS9 hypothetical protein YP_133585.1 2130558 R 298386 CDS YP_133586.1 54303593 3120345 complement(2131374..2132246) 1 NC_006371.1 transcriptional regulator 2132246 3120345 PBPRB1939 Photobacterium profundum SS9 transcriptional regulator YP_133586.1 2131374 R 298386 CDS YP_133587.1 54303594 3120469 2132359..2133726 1 NC_006371.1 sodium/drug antiporter; functions as a Na(+)-driven Na(+)/drug antiporter; member of multidrug and toxic compound extrusion (MATE) family; extrudes acriflavines and other compounds by utilizing the sodium gradient; multidrug efflux pump VmrA 2133726 vmrA 3120469 vmrA Photobacterium profundum SS9 multidrug efflux pump VmrA YP_133587.1 2132359 D 298386 CDS YP_133588.1 54303595 3120564 complement(2133898..2135370) 1 NC_006371.1 hypothetical protein 2135370 3120564 PBPRB1941 Photobacterium profundum SS9 hypothetical protein YP_133588.1 2133898 R 298386 CDS YP_133589.1 54303596 3120547 2136240..2137157 1 NC_006371.1 AraC family transcriptional regulator 2137157 3120547 PBPRB1942 Photobacterium profundum SS9 AraC family transcriptional regulator YP_133589.1 2136240 D 298386 CDS YP_133590.1 54303597 3120565 2137458..2138039 1 NC_006371.1 hypothetical protein 2138039 3120565 PBPRB1943 Photobacterium profundum SS9 hypothetical protein YP_133590.1 2137458 D 298386 CDS YP_133591.1 54303598 3120672 2138625..2139593 1 NC_006371.1 hypothetical protein 2139593 3120672 PBPRB1944 Photobacterium profundum SS9 hypothetical protein YP_133591.1 2138625 D 298386 CDS YP_133592.1 54303599 3120650 2139590..2140492 1 NC_006371.1 hypothetical protein 2140492 3120650 PBPRB1945 Photobacterium profundum SS9 hypothetical protein YP_133592.1 2139590 D 298386 CDS YP_133593.1 54303600 3120409 2140480..2141274 1 NC_006371.1 membrane channel protein 2141274 3120409 PBPRB1946 Photobacterium profundum SS9 membrane channel protein YP_133593.1 2140480 D 298386 CDS YP_133594.1 54303601 3120363 2142594..2143895 1 NC_006371.1 hypothetical protein 2143895 3120363 PBPRB1949 Photobacterium profundum SS9 hypothetical protein YP_133594.1 2142594 D 298386 CDS YP_133595.1 54303602 3120476 2144574..2147255 1 NC_006371.1 hypothetical protein 2147255 3120476 PBPRB1950 Photobacterium profundum SS9 hypothetical protein YP_133595.1 2144574 D 298386 CDS YP_133596.1 54303603 3120481 2148799..2150436 1 NC_006371.1 methyl-accepting chemotaxis protein 2150436 3120481 PBPRB1951 Photobacterium profundum SS9 methyl-accepting chemotaxis protein YP_133596.1 2148799 D 298386 CDS YP_133597.1 54303604 3120439 2150465..2151682 1 NC_006371.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 2151682 alr 3120439 alr Photobacterium profundum SS9 alanine racemase YP_133597.1 2150465 D 298386 CDS YP_133598.1 54303605 3120512 complement(2152028..2152300) 1 NC_006371.1 hypothetical protein 2152300 3120512 PBPRB1953 Photobacterium profundum SS9 hypothetical protein YP_133598.1 2152028 R 298386 CDS YP_133599.1 54303606 3120647 2152687..2153178 1 NC_006371.1 transcriptional regulator 2153178 3120647 PBPRB1954 Photobacterium profundum SS9 transcriptional regulator YP_133599.1 2152687 D 298386 CDS YP_133600.1 54303607 3120602 2153352..2153597 1 NC_006371.1 hypothetical protein 2153597 3120602 PBPRB1955 Photobacterium profundum SS9 hypothetical protein YP_133600.1 2153352 D 298386 CDS YP_133601.1 54303608 3120614 2153869..2154390 1 NC_006371.1 hypothetical protein 2154390 3120614 PBPRB1956 Photobacterium profundum SS9 hypothetical protein YP_133601.1 2153869 D 298386 CDS YP_133602.1 54303609 3120520 2154492..2154986 1 NC_006371.1 hypothetical protein 2154986 3120520 PBPRB1957 Photobacterium profundum SS9 hypothetical protein YP_133602.1 2154492 D 298386 CDS YP_133603.1 54303610 3120660 2155247..2156128 1 NC_006371.1 hypothetical protein 2156128 3120660 PBPRB1958 Photobacterium profundum SS9 hypothetical protein YP_133603.1 2155247 D 298386 CDS YP_133604.1 54303611 3120600 2156286..2156579 1 NC_006371.1 hypothetical protein 2156579 3120600 PBPRB1959 Photobacterium profundum SS9 hypothetical protein YP_133604.1 2156286 D 298386 CDS YP_133605.1 54303612 3120516 2157035..2157976 1 NC_006371.1 lactonizing lipase 2157976 3120516 PBPRB1960 Photobacterium profundum SS9 lactonizing lipase YP_133605.1 2157035 D 298386 CDS YP_133606.1 54303613 3120561 2157979..2158911 1 NC_006371.1 acts as a molecular chaperone to fold and export lipase A; lipase chaperone 2158911 3120561 PBPRB1961 Photobacterium profundum SS9 lipase chaperone YP_133606.1 2157979 D 298386 CDS YP_133607.1 54303614 3120568 complement(2159245..2159586) 1 NC_006371.1 AraC family transcriptional regulator 2159586 3120568 PBPRB1962 Photobacterium profundum SS9 AraC family transcriptional regulator YP_133607.1 2159245 R 298386 CDS YP_133608.1 54303615 3120456 2159849..2160274 1 NC_006371.1 hypothetical protein 2160274 3120456 PBPRB1963 Photobacterium profundum SS9 hypothetical protein YP_133608.1 2159849 D 298386 CDS YP_133609.1 54303616 3120381 complement(2160378..2161436) 1 NC_006371.1 transposase 2161436 3120381 PBPRB1964 Photobacterium profundum SS9 transposase YP_133609.1 2160378 R 298386 CDS YP_133610.1 54303617 3120567 complement(2161610..2162914) 1 NC_006371.1 PAP2 family protein 2162914 3120567 PBPRB1965 Photobacterium profundum SS9 PAP2 family protein YP_133610.1 2161610 R 298386 CDS YP_133611.1 54303618 3120679 complement(2162983..2164284) 1 NC_006371.1 hypothetical protein 2164284 3120679 PBPRB1966 Photobacterium profundum SS9 hypothetical protein YP_133611.1 2162983 R 298386 CDS YP_133612.1 54303619 3120557 complement(2164390..2165160) 1 NC_006371.1 hypothetical protein 2165160 3120557 PBPRB1967 Photobacterium profundum SS9 hypothetical protein YP_133612.1 2164390 R 298386 CDS YP_133613.1 54303620 3120630 2165592..2166458 1 NC_006371.1 hypothetical protein 2166458 3120630 PBPRB1968 Photobacterium profundum SS9 hypothetical protein YP_133613.1 2165592 D 298386 CDS YP_133614.1 54303621 3120414 complement(2166933..2167241) 1 NC_006371.1 hypothetical protein 2167241 3120414 PBPRB1969 Photobacterium profundum SS9 hypothetical protein YP_133614.1 2166933 R 298386 CDS YP_133615.1 54303622 3120361 2168138..2168725 1 NC_006371.1 hypothetical protein 2168725 3120361 PBPRB1970 Photobacterium profundum SS9 hypothetical protein YP_133615.1 2168138 D 298386 CDS YP_133616.1 54303623 3120521 complement(2168772..2169248) 1 NC_006371.1 hypothetical protein 2169248 3120521 PBPRB1971 Photobacterium profundum SS9 hypothetical protein YP_133616.1 2168772 R 298386 CDS YP_133617.1 54303624 3120454 complement(2169245..2169760) 1 NC_006371.1 hypothetical protein 2169760 3120454 PBPRB1972 Photobacterium profundum SS9 hypothetical protein YP_133617.1 2169245 R 298386 CDS YP_133618.1 54303625 3120080 complement(2169757..2170260) 1 NC_006371.1 hypothetical protein 2170260 3120080 PBPRB1973 Photobacterium profundum SS9 hypothetical protein YP_133618.1 2169757 R 298386 CDS YP_133619.1 54303626 3120444 complement(2170310..2171506) 1 NC_006371.1 hypothetical protein 2171506 3120444 PBPRB1974 Photobacterium profundum SS9 hypothetical protein YP_133619.1 2170310 R 298386 CDS YP_133620.1 54303627 3120410 complement(2171696..2172280) 1 NC_006371.1 hypothetical protein 2172280 3120410 PBPRB1975 Photobacterium profundum SS9 hypothetical protein YP_133620.1 2171696 R 298386 CDS YP_133621.1 54303628 3120427 complement(2172530..2172823) 1 NC_006371.1 hypothetical protein 2172823 3120427 PBPRB1976 Photobacterium profundum SS9 hypothetical protein YP_133621.1 2172530 R 298386 CDS YP_133622.1 54303629 3120687 complement(2174012..2175364) 1 NC_006371.1 hypothetical protein 2175364 3120687 PBPRB1977 Photobacterium profundum SS9 hypothetical protein YP_133622.1 2174012 R 298386 CDS YP_133623.1 54303630 3120463 complement(2175513..2176259) 1 NC_006371.1 hypothetical protein 2176259 3120463 PBPRB1978 Photobacterium profundum SS9 hypothetical protein YP_133623.1 2175513 R 298386 CDS YP_133624.1 54303631 3120422 complement(2176313..2176705) 1 NC_006371.1 hypothetical protein 2176705 3120422 PBPRB1979 Photobacterium profundum SS9 hypothetical protein YP_133624.1 2176313 R 298386 CDS YP_133625.1 54303632 3120545 complement(2176808..2177323) 1 NC_006371.1 hypothetical protein 2177323 3120545 PBPRB1980 Photobacterium profundum SS9 hypothetical protein YP_133625.1 2176808 R 298386 CDS YP_133626.1 54303633 3120524 complement(2177657..2177905) 1 NC_006371.1 hypothetical protein 2177905 3120524 PBPRB1981 Photobacterium profundum SS9 hypothetical protein YP_133626.1 2177657 R 298386 CDS YP_133627.1 54303634 3120446 complement(2178033..2178659) 1 NC_006371.1 thiol-disulfide isomerase 2178659 3120446 PBPRB1982 Photobacterium profundum SS9 thiol-disulfide isomerase YP_133627.1 2178033 R 298386 CDS YP_133628.1 54303635 3120657 2178945..2179211 1 NC_006371.1 hypothetical protein 2179211 3120657 PBPRB1983 Photobacterium profundum SS9 hypothetical protein YP_133628.1 2178945 D 298386 CDS YP_133629.1 54303636 3120626 2179247..2180029 1 NC_006371.1 transposase 2180029 3120626 PBPRB1984 Photobacterium profundum SS9 transposase YP_133629.1 2179247 D 298386 CDS YP_133630.1 54303637 3120494 complement(2180749..2181432) 1 NC_006371.1 hypothetical protein 2181432 3120494 PBPRB1985 Photobacterium profundum SS9 hypothetical protein YP_133630.1 2180749 R 298386 CDS YP_133631.1 54303638 3120560 complement(2181740..2182669) 1 NC_006371.1 lipid A biosynthesis lauroyl acyltransferase 2182669 3120560 PBPRB1986 Photobacterium profundum SS9 lipid A biosynthesis lauroyl acyltransferase YP_133631.1 2181740 R 298386 CDS YP_133632.1 54303639 3120354 complement(2183040..2185952) 1 NC_006371.1 hypothetical protein 2185952 3120354 PBPRB1987 Photobacterium profundum SS9 hypothetical protein YP_133632.1 2183040 R 298386 CDS YP_133633.1 54303640 3120597 complement(2186591..2186797) 1 NC_006371.1 hypothetical protein 2186797 3120597 PBPRB1988 Photobacterium profundum SS9 hypothetical protein YP_133633.1 2186591 R 298386 CDS YP_133634.1 54303641 3120341 complement(2186901..2187665) 1 NC_006371.1 hypothetical protein 2187665 3120341 PBPRB1989 Photobacterium profundum SS9 hypothetical protein YP_133634.1 2186901 R 298386 CDS YP_133635.1 54303642 3120584 complement(2187790..2188161) 1 NC_006371.1 hypothetical protein 2188161 3120584 PBPRB1990 Photobacterium profundum SS9 hypothetical protein YP_133635.1 2187790 R 298386 CDS YP_133636.1 54303643 3120574 complement(2189584..2190138) 1 NC_006371.1 hypothetical protein 2190138 3120574 PBPRB1991 Photobacterium profundum SS9 hypothetical protein YP_133636.1 2189584 R 298386 CDS YP_133637.1 54303644 3120474 complement(2190145..2191053) 1 NC_006371.1 hypothetical protein 2191053 3120474 PBPRB1992 Photobacterium profundum SS9 hypothetical protein YP_133637.1 2190145 R 298386 CDS YP_133638.1 54303645 3120507 complement(2191164..2192111) 1 NC_006371.1 hypothetical protein 2192111 3120507 PBPRB1993 Photobacterium profundum SS9 hypothetical protein YP_133638.1 2191164 R 298386 CDS YP_133639.1 54303646 3120484 complement(2192115..2194898) 1 NC_006371.1 hypothetical protein 2194898 3120484 PBPRB1994 Photobacterium profundum SS9 hypothetical protein YP_133639.1 2192115 R 298386 CDS YP_133640.1 54303647 3120537 complement(2195036..2196031) 1 NC_006371.1 hypothetical protein 2196031 3120537 PBPRB1995 Photobacterium profundum SS9 hypothetical protein YP_133640.1 2195036 R 298386 CDS YP_133641.1 54303648 3120471 2196271..2197836 1 NC_006371.1 hypothetical protein 2197836 3120471 PBPRB1996 Photobacterium profundum SS9 hypothetical protein YP_133641.1 2196271 D 298386 CDS YP_133642.1 54303649 3120583 complement(2198590..2200086) 1 NC_006371.1 sodium/proline symporter 2200086 3120583 PBPRB1997 Photobacterium profundum SS9 sodium/proline symporter YP_133642.1 2198590 R 298386 CDS YP_133643.1 54303650 3120556 complement(2200249..2200944) 1 NC_006371.1 hypothetical protein 2200944 3120556 PBPRB1998 Photobacterium profundum SS9 hypothetical protein YP_133643.1 2200249 R 298386 CDS YP_133644.1 54303651 3120576 complement(2200979..2204104) 1 NC_006371.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 2204104 3120576 PBPRB1999 Photobacterium profundum SS9 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_133644.1 2200979 R 298386 CDS YP_133645.1 54303652 3120489 2204097..2204483 1 NC_006371.1 hypothetical protein 2204483 3120489 PBPRB2000 Photobacterium profundum SS9 hypothetical protein YP_133645.1 2204097 D 298386 CDS YP_133646.1 54303653 3120434 complement(2204527..2205324) 1 NC_006371.1 AraC family transcriptional regulator 2205324 3120434 PBPRB2001 Photobacterium profundum SS9 AraC family transcriptional regulator YP_133646.1 2204527 R 298386 CDS YP_133647.1 54303654 3120550 2206252..2207205 1 NC_006371.1 hypothetical protein 2207205 3120550 PBPRB2002 Photobacterium profundum SS9 hypothetical protein YP_133647.1 2206252 D 298386 CDS YP_133648.1 54303655 3120598 complement(2207220..2208194) 1 NC_006371.1 transcriptional regulator 2208194 3120598 PBPRB2003 Photobacterium profundum SS9 transcriptional regulator YP_133648.1 2207220 R 298386 CDS YP_133649.1 54303656 3120604 complement(2208507..2209859) 1 NC_006371.1 maltoporin 2209859 3120604 PBPRB2004 Photobacterium profundum SS9 maltoporin YP_133649.1 2208507 R 298386 CDS YP_133650.1 54303657 3120659 complement(2210272..2210583) 1 NC_006371.1 PTS system, cellobiose-specific IIA component 2210583 3120659 PBPRB2005 Photobacterium profundum SS9 PTS system, cellobiose-specific IIA component YP_133650.1 2210272 R 298386 CDS YP_133651.1 54303658 3120475 complement(2210749..2212167) 1 NC_006371.1 glycosyl hydrolase 2212167 3120475 PBPRB2006 Photobacterium profundum SS9 glycosyl hydrolase YP_133651.1 2210749 R 298386 CDS YP_133652.1 54303659 3120367 complement(2212219..2213541) 1 NC_006371.1 phosphotransferase system cellobiose-specific component IIC 2213541 3120367 PBPRB2007 Photobacterium profundum SS9 phosphotransferase system cellobiose-specific component IIC YP_133652.1 2212219 R 298386 CDS YP_133653.1 54303660 3120522 complement(2213604..2213984) 1 NC_006371.1 PTS system cellobiose-specific IIB component 2213984 3120522 PBPRB2008 Photobacterium profundum SS9 PTS system cellobiose-specific IIB component YP_133653.1 2213604 R 298386 CDS YP_133654.1 54303661 3120421 2214369..2215679 1 NC_006371.1 phosphotransferase systemcellobiose-specific component IIC 2215679 3120421 PBPRB2009 Photobacterium profundum SS9 phosphotransferase systemcellobiose-specific component IIC YP_133654.1 2214369 D 298386 CDS YP_133655.1 54303662 3120467 complement(2215834..2217246) 1 NC_006371.1 efflux family protein 2217246 3120467 PBPRB2010 Photobacterium profundum SS9 efflux family protein YP_133655.1 2215834 R 298386 CDS YP_133656.1 54303663 3120497 complement(2217413..2217934) 1 NC_006371.1 hypothetical protein 2217934 3120497 PBPRB2011 Photobacterium profundum SS9 hypothetical protein YP_133656.1 2217413 R 298386 CDS YP_133657.1 54303664 3119996 2218309..2219211 1 NC_006371.1 transcriptional regulator 2219211 3119996 PBPRB2012 Photobacterium profundum SS9 transcriptional regulator YP_133657.1 2218309 D 298386 CDS YP_133658.1 54303665 3120413 2219341..2220528 1 NC_006371.1 hypothetical protein 2220528 3120413 PBPRB2013 Photobacterium profundum SS9 hypothetical protein YP_133658.1 2219341 D 298386 CDS YP_133659.1 54303666 3120608 2221055..2221741 1 NC_006371.1 transcriptional regulator 2221741 3120608 PBPRB2014 Photobacterium profundum SS9 transcriptional regulator YP_133659.1 2221055 D 298386 CDS YP_133660.1 54303667 3120651 complement(2222206..2222841) 1 NC_006371.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 2222841 3120651 PBPRB2015 Photobacterium profundum SS9 pyridoxamine 5'-phosphate oxidase YP_133660.1 2222206 R 298386 CDS YP_133661.1 54303668 3120510 2223280..2225139 1 NC_006371.1 C4-dicarboxylate transporter signal transduction histidine kinase 2225139 3120510 PBPRB2016 Photobacterium profundum SS9 C4-dicarboxylate transporter signal transduction histidine kinase YP_133661.1 2223280 D 298386 CDS YP_133662.1 54303669 3120635 2225136..2226488 1 NC_006371.1 C4-dicarboxylate transporttranscriptional regulatory protein 2226488 3120635 PBPRB2017 Photobacterium profundum SS9 C4-dicarboxylate transporttranscriptional regulatory protein YP_133662.1 2225136 D 298386 CDS YP_133663.1 54303670 3120347 2226993..2228918 1 NC_006371.1 hypothetical protein 2228918 3120347 PBPRB2018 Photobacterium profundum SS9 hypothetical protein YP_133663.1 2226993 D 298386 CDS YP_133664.1 54303671 3120613 complement(2228984..2230645) 1 NC_006371.1 hypothetical protein 2230645 3120613 PBPRB2019 Photobacterium profundum SS9 hypothetical protein YP_133664.1 2228984 R 298386 CDS YP_133665.1 54303672 3120607 2230881..2231174 1 NC_006371.1 hypothetical protein 2231174 3120607 PBPRB2020 Photobacterium profundum SS9 hypothetical protein YP_133665.1 2230881 D 298386 CDS YP_133666.1 54303673 3120344 complement(2231213..2231608) 1 NC_006371.1 hypothetical protein 2231608 3120344 PBPRB2021 Photobacterium profundum SS9 hypothetical protein YP_133666.1 2231213 R 298386 CDS YP_133667.1 54303674 3120477 complement(2231869..2232609) 1 NC_006371.1 hydrolase 2232609 3120477 PBPRB2022 Photobacterium profundum SS9 hydrolase YP_133667.1 2231869 R 298386 CDS YP_133668.1 54303675 3120644 complement(2232622..2234754) 1 NC_006371.1 hypothetical protein 2234754 3120644 PBPRB2023 Photobacterium profundum SS9 hypothetical protein YP_133668.1 2232622 R 298386 CDS YP_133669.1 54303676 3120627 complement(2234897..2235871) 1 NC_006371.1 ParB family protein 2235871 3120627 PBPRB2024 Photobacterium profundum SS9 ParB family protein YP_133669.1 2234897 R 298386 CDS YP_133670.1 54303677 3120503 complement(2235880..2237067) 1 NC_006371.1 ParA family protein 2237067 3120503 PBPRB2025 Photobacterium profundum SS9 ParA family protein YP_133670.1 2235880 R 298386 CDS