-- dump date 20120504_154753 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 298386000001 SEQ_END SEQ_END NC_005871.1 80033 80033 DR NC_005871.1; contig end 80033..80033 Photobacterium profundum SS9 298386000002 SEQ_END SEQ_END NC_006370.1 4085304 4085304 DR NC_006370.1; contig end 4085304..4085304 Photobacterium profundum SS9 298386000003 SEQ_END SEQ_END NC_006371.1 2237943 2237943 DR NC_006371.1; contig end 2237943..2237943 Photobacterium profundum SS9 YP_015455.1 CDS PBPRC0001 NC_005871.1 317 709 D putative sex pilus assembly and synthesis protein (TraY) 317..709 Photobacterium profundum SS9 2806699 YP_015456.1 CDS PBPRC0002 NC_005871.1 917 1201 R hypothetical protein complement(917..1201) Photobacterium profundum SS9 2806692 YP_015457.1 CDS PBPRC0003 NC_005871.1 1503 1775 D hypothetical protein 1503..1775 Photobacterium profundum SS9 2806698 YP_015458.1 CDS PBPRC0004 NC_005871.1 2007 2654 D sex pilus assembly and synthesis protein TraE 2007..2654 Photobacterium profundum SS9 2806702 YP_015459.1 CDS PBPRC0005 NC_005871.1 2651 3385 D hypothetical protein 2651..3385 Photobacterium profundum SS9 2806697 YP_015460.1 CDS PBPRC0006 NC_005871.1 3379 4848 D putative sex pilus assembly and synthesis protein TraB 3379..4848 Photobacterium profundum SS9 2806707 YP_015461.1 CDS PBPRC0007 NC_005871.1 4860 5255 D hypothetical protein 4860..5255 Photobacterium profundum SS9 2806689 YP_015462.1 CDS PBPRC0008 NC_005871.1 5259 7847 D putative sex pilus assembly and synthesis protein TraC 5259..7847 Photobacterium profundum SS9 2806654 YP_015463.1 CDS PBPRC0009 NC_005871.1 7943 8359 R hypothetical protein complement(7943..8359) Photobacterium profundum SS9 2806653 YP_015464.1 CDS PBPRC0010 NC_005871.1 8406 9104 D sex pilus assembly and synthesis protein TraW 8406..9104 Photobacterium profundum SS9 2806645 YP_015465.1 CDS PBPRC0011 NC_005871.1 9108 10112 D putative sex pilus assembly and synthesis protein TraU 9108..10112 Photobacterium profundum SS9 2806690 YP_015466.1 CDS PBPRC0012 NC_005871.1 10303 11007 D conjugative transfer protein TrbC 10303..11007 Photobacterium profundum SS9 2806660 YP_015467.1 CDS PBPRC0013 NC_005871.1 11009 12811 D TraN; TrhN; involved in stabilizing mating pairs during plasmid conjugation; F plasmid TraN appears to recognize OmpA in the recipient cell; conjugal transfer mating pair stabilization protein TraN 11009..12811 Photobacterium profundum SS9 2806652 YP_015468.1 CDS PBPRC0014 NC_005871.1 12808 13599 D sex pilus assembly and synthesis protein TraF 12808..13599 Photobacterium profundum SS9 2806643 YP_015469.1 CDS PBPRC0015 NC_005871.1 13611 14051 D putative thiol-disulfide isomerase 13611..14051 Photobacterium profundum SS9 2806644 YP_015470.1 CDS PBPRC0016 NC_005871.1 15384 18218 D putative sex pilus assembly and mating pair TraG 15384..18218 Photobacterium profundum SS9 2806641 YP_015471.1 CDS PBPRC0017 NC_005871.1 18222 18701 R hypothetical protein complement(18222..18701) Photobacterium profundum SS9 2806701 YP_015472.1 CDS PBPRC0018 NC_005871.1 18779 19150 D hypothetical protein 18779..19150 Photobacterium profundum SS9 2806685 YP_015473.1 CDS PBPRC0019 NC_005871.1 19147 21252 D conjugative transfer protein TraD 19147..21252 Photobacterium profundum SS9 2806674 YP_015474.1 CDS PBPRC0020 NC_005871.1 21670 22164 D hypothetical protein 21670..22164 Photobacterium profundum SS9 2806665 YP_015475.1 CDS PBPRC0021 NC_005871.1 22182 23342 R hypothetical protein complement(22182..23342) Photobacterium profundum SS9 2806693 YP_015476.1 CDS PBPRC0022 NC_005871.1 23492 29434 D DNA helicase TraI 23492..29434 Photobacterium profundum SS9 2806681 YP_015477.1 CDS PBPRC0023 NC_005871.1 29463 29849 R hypothetical protein complement(29463..29849) Photobacterium profundum SS9 2806663 YP_015478.1 CDS PBPRC0024 NC_005871.1 30909 31367 R hypothetical protein complement(30909..31367) Photobacterium profundum SS9 2806658 YP_015479.1 CDS PBPRC0025 NC_005871.1 31938 32915 R putative antirestriction protein complement(31938..32915) Photobacterium profundum SS9 2806647 YP_015480.1 CDS PBPRC0026 NC_005871.1 33557 34747 D putative partitioning protein A 33557..34747 Photobacterium profundum SS9 2806679 YP_015481.1 CDS PBPRC0027 NC_005871.1 34750 35835 D putative partitioning protein B 34750..35835 Photobacterium profundum SS9 2806684 YP_015482.1 CDS PBPRC0028 NC_005871.1 36432 36779 R hypothetical protein complement(36432..36779) Photobacterium profundum SS9 2806673 YP_015483.1 CDS PBPRC0029 NC_005871.1 36895 37743 R putative endonuclease I complement(36895..37743) Photobacterium profundum SS9 2806664 YP_015484.1 CDS PBPRC0030 NC_005871.1 37791 38285 R hypothetical protein complement(37791..38285) Photobacterium profundum SS9 2806683 YP_015485.1 CDS PBPRC0031 NC_005871.1 38487 39068 R hypothetical protein complement(38487..39068) Photobacterium profundum SS9 2806687 YP_015486.1 CDS PBPRC0032 NC_005871.1 39908 40201 R hypothetical protein complement(39908..40201) Photobacterium profundum SS9 2806694 YP_015487.1 CDS PBPRC0033 NC_005871.1 43366 43674 R hypothetical protein complement(43366..43674) Photobacterium profundum SS9 2806651 YP_015488.1 CDS PBPRC0034 NC_005871.1 43683 44603 R hypothetical protein complement(43683..44603) Photobacterium profundum SS9 2806704 YP_015489.1 CDS PBPRC0035 NC_005871.1 44619 46046 R unknown function; in E. coli this protein is regulated by BaeR, a protein involved in resistance to novobiocin and deoxycholate; hypothetical protein complement(44619..46046) Photobacterium profundum SS9 2806648 YP_015490.1 CDS PBPRC0036 NC_005871.1 46078 46740 R hypothetical protein complement(46078..46740) Photobacterium profundum SS9 2806672 YP_015491.1 CDS PBPRC0037 NC_005871.1 46753 47778 R hypothetical protein complement(46753..47778) Photobacterium profundum SS9 2806671 YP_015492.1 CDS PBPRC0038 NC_005871.1 47819 48235 R hypothetical protein complement(47819..48235) Photobacterium profundum SS9 2806642 YP_015493.1 CDS PBPRC0039 NC_005871.1 48251 48799 R hypothetical protein complement(48251..48799) Photobacterium profundum SS9 2806677 YP_015494.1 CDS PBPRC0040 NC_005871.1 48841 51318 R hypothetical protein complement(48841..51318) Photobacterium profundum SS9 2806657 YP_015495.1 CDS PBPRC0041 NC_005871.1 51581 51868 D hypothetical protein 51581..51868 Photobacterium profundum SS9 2806668 YP_015496.1 CDS PBPRC0042 NC_005871.1 51938 52891 R hypothetical protein complement(51938..52891) Photobacterium profundum SS9 2806700 YP_015497.1 CDS PBPRC0043 NC_005871.1 54028 56025 D putative exonuclease 54028..56025 Photobacterium profundum SS9 2806686 YP_015498.1 CDS PBPRC0044 NC_005871.1 56032 57750 D putative helicase 56032..57750 Photobacterium profundum SS9 2806659 YP_015499.1 CDS PBPRC0045 NC_005871.1 57943 58239 R hypothetical protein complement(57943..58239) Photobacterium profundum SS9 2806667 YP_015500.1 CDS PBPRC0046 NC_005871.1 58879 59142 D hypothetical protein 58879..59142 Photobacterium profundum SS9 2806705 YP_015501.1 CDS PBPRC0047 NC_005871.1 59286 59594 R hypothetical protein complement(59286..59594) Photobacterium profundum SS9 2806706 YP_015502.1 CDS PBPRC0048 NC_005871.1 59613 59972 R hypothetical protein complement(59613..59972) Photobacterium profundum SS9 2806680 YP_015503.1 CDS PBPRC0049 NC_005871.1 61198 61812 D putative cyclopropane fatty acid synthase 61198..61812 Photobacterium profundum SS9 2806688 YP_015504.1 CDS PBPRC0050 NC_005871.1 61899 62543 R putative transposase complement(61899..62543) Photobacterium profundum SS9 2806646 YP_015505.1 CDS PBPRC0051 NC_005871.1 63001 63306 R hypothetical protein complement(63001..63306) Photobacterium profundum SS9 2806649 YP_015506.1 CDS PBPRC0052 NC_005871.1 63869 64501 D resolvase family; putative site-specific recombinase 63869..64501 Photobacterium profundum SS9 2806682 YP_015507.1 CDS PBPRC0053 NC_005871.1 64523 64918 D putative transposase 64523..64918 Photobacterium profundum SS9 2806676 YP_015508.1 CDS PBPRC0054 NC_005871.1 65355 66380 R hypothetical protein complement(65355..66380) Photobacterium profundum SS9 2806670 YP_015509.1 CDS PBPRC0055 NC_005871.1 66987 67478 D putative transposase 66987..67478 Photobacterium profundum SS9 2806695 YP_015510.1 CDS PBPRC0056 NC_005871.1 67811 68134 R hypothetical protein complement(67811..68134) Photobacterium profundum SS9 2806655 YP_015511.1 CDS PBPRC0057 NC_005871.1 68271 70019 D hypothetical protein 68271..70019 Photobacterium profundum SS9 2806656 YP_015512.1 CDS PBPRC0058 NC_005871.1 70380 71414 R hypothetical protein complement(70380..71414) Photobacterium profundum SS9 2806650 YP_015513.1 CDS PBPRC0059 NC_005871.1 71507 72244 R putative transposase complement(71507..72244) Photobacterium profundum SS9 2806678 YP_015514.1 CDS PBPRC0060 NC_005871.1 72364 72777 D hypothetical protein 72364..72777 Photobacterium profundum SS9 2806675 YP_015515.1 CDS PBPRC0061 NC_005871.1 73628 74278 D hypothetical protein 73628..74278 Photobacterium profundum SS9 2806666 YP_015516.1 CDS PBPRC0062 NC_005871.1 74859 75119 D hypothetical protein 74859..75119 Photobacterium profundum SS9 2806662 YP_015517.1 CDS PBPRC0063 NC_005871.1 75119 75421 D stabilization protein ParE 75119..75421 Photobacterium profundum SS9 2806691 YP_015518.1 CDS PBPRC0064 NC_005871.1 75589 76602 D KrfA; hypothetical protein 75589..76602 Photobacterium profundum SS9 2806703 YP_015519.1 CDS PBPRC0065 NC_005871.1 77016 77291 D hypothetical protein 77016..77291 Photobacterium profundum SS9 2806669 YP_015520.1 CDS PBPRC0066 NC_005871.1 77981 78874 R hypothetical protein complement(77981..78874) Photobacterium profundum SS9 2806661 YP_015521.1 CDS PBPRC0067 NC_005871.1 79373 79657 D hypothetical protein 79373..79657 Photobacterium profundum SS9 2806696 YP_128258.1 CDS PBPRA0001 NC_006370.1 139 591 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(139..591) Photobacterium profundum SS9 3122501 YP_128259.1 CDS trmE NC_006370.1 746 2113 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(746..2113) Photobacterium profundum SS9 3123947 YP_128260.1 CDS PBPRA0003 NC_006370.1 2254 3870 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC complement(2254..3870) Photobacterium profundum SS9 3122830 YP_128261.1 CDS rnpA NC_006370.1 4097 4453 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(4097..4453) Photobacterium profundum SS9 3122735 YP_128262.1 CDS PBPRA0005 NC_006370.1 4752 5522 R amino acid ABC transporter ATP-binding protein complement(4752..5522) Photobacterium profundum SS9 3121963 YP_128263.1 CDS PBPRA0006 NC_006370.1 5519 6244 R amino acid ABC transporter permease complement(5519..6244) Photobacterium profundum SS9 3122275 YP_128264.1 CDS PBPRA0007 NC_006370.1 6296 7051 R amino acid ABC transporter substrate-binding protein complement(6296..7051) Photobacterium profundum SS9 3122014 YP_128265.1 CDS dnaA NC_006370.1 7364 8788 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 7364..8788 Photobacterium profundum SS9 3125204 YP_128266.1 CDS PBPRA0009 NC_006370.1 8790 9890 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 8790..9890 Photobacterium profundum SS9 3124984 YP_128267.2 CDS recF NC_006370.1 9894 10973 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 9894..10973 Photobacterium profundum SS9 3123204 YP_128268.1 CDS gyrB NC_006370.1 10993 13410 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 10993..13410 Photobacterium profundum SS9 3123807 YP_128269.1 CDS PBPRA0012 NC_006370.1 13497 15599 R flagellar biosynthesis protein complement(13497..15599) Photobacterium profundum SS9 3125402 YP_128270.1 CDS PBPRA0013 NC_006370.1 15616 16743 R FlhB flagellar biosynthetic protein complement(15616..16743) Photobacterium profundum SS9 3122400 YP_128271.1 CDS PBPRA0014 NC_006370.1 16740 17519 R flagellar biosynthetic protein FliR complement(16740..17519) Photobacterium profundum SS9 3124852 YP_128272.1 CDS PBPRA0015 NC_006370.1 17523 17792 R flagellar biosynthetic protein complement(17523..17792) Photobacterium profundum SS9 3121977 YP_128273.1 CDS fliP NC_006370.1 17795 18523 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(17795..18523) Photobacterium profundum SS9 3124683 YP_128274.1 CDS PBPRA0017 NC_006370.1 18523 18876 R flagellar motor switch protein complement(18523..18876) Photobacterium profundum SS9 3123404 YP_128275.1 CDS PBPRA0018 NC_006370.1 18888 19778 R hypothetical protein complement(18888..19778) Photobacterium profundum SS9 3124733 YP_128276.1 CDS PBPRA0019 NC_006370.1 20484 21356 D hypothetical protein 20484..21356 Photobacterium profundum SS9 3124413 YP_128277.1 CDS PBPRA0020 NC_006370.1 21377 22795 D two-component response regulator 21377..22795 Photobacterium profundum SS9 3122157 YP_128278.1 CDS PBPRA0021 NC_006370.1 22816 23160 D FliE-like hook basal body protein 22816..23160 Photobacterium profundum SS9 3124474 YP_128279.1 CDS fliF NC_006370.1 23174 24856 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; the Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar MS-ring protein 23174..24856 Photobacterium profundum SS9 3124952 YP_128280.1 CDS fliG NC_006370.1 24843 25850 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 24843..25850 Photobacterium profundum SS9 3124332 YP_128281.1 CDS fliH NC_006370.1 25868 26554 D binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 25868..26554 Photobacterium profundum SS9 3124470 YP_128282.1 CDS PBPRA0025 NC_006370.1 26547 27887 D FliI, flagellum-specific ATP synthase 26547..27887 Photobacterium profundum SS9 3124188 YP_128283.1 CDS PBPRA0026 NC_006370.1 27987 28325 D hypothetical protein 27987..28325 Photobacterium profundum SS9 3125515 YP_128284.1 CDS PBPRA0027 NC_006370.1 28357 28737 R hypothetical protein complement(28357..28737) Photobacterium profundum SS9 3123198 YP_128285.1 CDS PBPRA0028 NC_006370.1 28830 29111 R flagellar protein complement(28830..29111) Photobacterium profundum SS9 3122351 YP_128286.1 CDS PBPRA0029 NC_006370.1 29470 30231 R hypothetical protein complement(29470..30231) Photobacterium profundum SS9 3122207 YP_128287.1 CDS flgB NC_006370.1 30287 30706 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar basal-body rod protein FlgB 30287..30706 Photobacterium profundum SS9 3121983 YP_128288.1 CDS PBPRA0031 NC_006370.1 30712 31128 D flagellar basal body rod protein FlgC 30712..31128 Photobacterium profundum SS9 3123242 YP_128289.1 CDS PBPRA0032 NC_006370.1 31138 31812 D flagellar basal body rod modification protein FlgD 31138..31812 Photobacterium profundum SS9 3125529 YP_128290.1 CDS PBPRA0033 NC_006370.1 31866 33284 D flagellar hook protein FlgE 31866..33284 Photobacterium profundum SS9 3121943 YP_128291.1 CDS PBPRA0034 NC_006370.1 33299 34033 D FlgF flagellar basal-body rod protein 33299..34033 Photobacterium profundum SS9 3122120 YP_128292.1 CDS PBPRA0035 NC_006370.1 34093 34878 D FlgG flagellar basal-body rod protein 34093..34878 Photobacterium profundum SS9 3125427 YP_128293.1 CDS flgI NC_006370.1 35533 36657 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring biosynthesis protein FlgA 35533..36657 Photobacterium profundum SS9 3122010 YP_128294.1 CDS PBPRA0037 NC_006370.1 36807 37181 D flagellar protein 36807..37181 Photobacterium profundum SS9 3125497 YP_128295.1 CDS PBPRA0038 NC_006370.1 37178 38584 D flagellar hook-associated protein 37178..38584 Photobacterium profundum SS9 3125324 YP_128296.1 CDS flgL NC_006370.1 38612 39526 D with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; in Vibrio parahaemolyticus the protein in this cluster is associated with the lateral flagella; flagellar hook-associated protein FlgL 38612..39526 Photobacterium profundum SS9 3122305 YP_128297.1 CDS PBPRA0040 NC_006370.1 39582 40667 D hypothetical protein 39582..40667 Photobacterium profundum SS9 3124953 YP_128298.1 CDS PBPRA0041 NC_006370.1 41029 42309 D flagellin type B 41029..42309 Photobacterium profundum SS9 3122999 YP_128299.1 CDS PBPRA0042 NC_006370.1 42577 44121 D hypothetical protein 42577..44121 Photobacterium profundum SS9 3122412 YP_128300.1 CDS PBPRA0043 NC_006370.1 44142 44549 D LafC 44142..44549 Photobacterium profundum SS9 3124144 YP_128301.1 CDS PBPRA0044 NC_006370.1 44569 44826 D hypothetical protein 44569..44826 Photobacterium profundum SS9 3125123 YP_128302.1 CDS PBPRA0045 NC_006370.1 44839 46113 D flagellar hook control length protein 44839..46113 Photobacterium profundum SS9 3125009 YP_128303.1 CDS PBPRA0046 NC_006370.1 46134 46628 D hypothetical protein 46134..46628 Photobacterium profundum SS9 3124047 YP_128304.1 CDS PBPRA0047 NC_006370.1 46640 47395 D flagellar-specific transcription initiation factor sigma, LafS 46640..47395 Photobacterium profundum SS9 3125006 YP_128305.1 CDS PBPRA0048 NC_006370.1 47408 48256 D With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 47408..48256 Photobacterium profundum SS9 3125139 YP_128306.1 CDS PBPRA0049 NC_006370.1 48263 49255 D chemotaxis LafU protein 48263..49255 Photobacterium profundum SS9 3125334 YP_128307.1 CDS PBPRA0050 NC_006370.1 49573 50670 D hypothetical protein 49573..50670 Photobacterium profundum SS9 3122803 YP_128308.1 CDS PBPRA0051 NC_006370.1 50663 51361 D hypothetical protein 50663..51361 Photobacterium profundum SS9 3122191 YP_128309.1 CDS PBPRA0052 NC_006370.1 51476 51781 R hypothetical protein complement(51476..51781) Photobacterium profundum SS9 3123335 YP_128310.1 CDS PBPRA0053 NC_006370.1 51829 52266 D 16kDa heat shock protein A 51829..52266 Photobacterium profundum SS9 3124759 YP_128311.1 CDS avtA NC_006370.1 52470 53720 R transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis; valine--pyruvate transaminase complement(52470..53720) Photobacterium profundum SS9 3125386 YP_128312.1 CDS glyS NC_006370.1 54008 56077 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(54008..56077) Photobacterium profundum SS9 3122909 YP_128313.1 CDS glyQ NC_006370.1 56087 57052 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(56087..57052) Photobacterium profundum SS9 3122155 YP_128314.1 CDS PBPRA0057 NC_006370.1 57289 58014 D OmpA family protein 57289..58014 Photobacterium profundum SS9 3123662 YP_128315.1 CDS PBPRA0058 NC_006370.1 58322 58879 D hypothetical protein 58322..58879 Photobacterium profundum SS9 3121998 YP_128316.1 CDS PBPRA0059 NC_006370.1 59018 59281 D NADH dehydrogenase subunit II-like protein 59018..59281 Photobacterium profundum SS9 3122486 YP_128317.1 CDS PBPRA0060 NC_006370.1 59336 59584 R hypothetical protein complement(59336..59584) Photobacterium profundum SS9 3122532 YP_128318.1 CDS PBPRA0061 NC_006370.1 60065 61006 D LysR family transcriptional regulator 60065..61006 Photobacterium profundum SS9 3123411 YP_128319.1 CDS PBPRA0062 NC_006370.1 61412 62482 R zinc-binding alcohol dehydrogenase complement(61412..62482) Photobacterium profundum SS9 3123635 YP_128320.1 CDS fadA NC_006370.1 62599 63762 R FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase complement(62599..63762) Photobacterium profundum SS9 3122990 YP_128321.1 CDS fadB NC_006370.1 63779 65941 R includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha complement(63779..65941) Photobacterium profundum SS9 3123934 YP_128322.1 CDS PBPRA0065 NC_006370.1 66439 67065 D hypothetical protein 66439..67065 Photobacterium profundum SS9 3123615 YP_128323.1 CDS PBPRA0066 NC_006370.1 67096 68553 D potassium uptake protein TrkH 67096..68553 Photobacterium profundum SS9 3124860 YP_128324.1 CDS hemG NC_006370.1 68563 69087 D catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; protoporphyrinogen oxidase 68563..69087 Photobacterium profundum SS9 3122828 YP_128325.1 CDS PBPRA0078 NC_006370.1 81181 81744 R transposase and inactivated derivative complement(81181..81744) Photobacterium profundum SS9 3125031 YP_128326.1 CDS PBPRA0079 NC_006370.1 81746 82216 R transposase and inactivated derivative complement(81746..82216) Photobacterium profundum SS9 3124054 YP_128327.1 CDS PBPRA0080 NC_006370.1 82353 83369 D transposase 82353..83369 Photobacterium profundum SS9 3122133 YP_128328.1 CDS PBPRA0081 NC_006370.1 83654 84217 R transposase and inactivated derivative complement(83654..84217) Photobacterium profundum SS9 3123999 YP_128329.1 CDS PBPRA0082 NC_006370.1 84219 84689 R transposase and inactivated derivative complement(84219..84689) Photobacterium profundum SS9 3124979 YP_128330.1 CDS PBPRA0083 NC_006370.1 84826 85842 D transposase 84826..85842 Photobacterium profundum SS9 3124076 YP_128331.1 CDS PBPRA0084 NC_006370.1 86129 86998 R participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY complement(86129..86998) Photobacterium profundum SS9 3123333 YP_128332.1 CDS PBPRA0085 NC_006370.1 87131 88615 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 87131..88615 Photobacterium profundum SS9 3125383 YP_128333.1 CDS PBPRA0086 NC_006370.1 88717 88983 R hypothetical protein complement(88717..88983) Photobacterium profundum SS9 3122924 YP_128334.1 CDS PBPRA0087 NC_006370.1 89116 92232 R multidrug resistance protein complement(89116..92232) Photobacterium profundum SS9 3121990 YP_128335.1 CDS PBPRA0088 NC_006370.1 92245 92757 R hypothetical protein complement(92245..92757) Photobacterium profundum SS9 3124021 YP_128336.1 CDS PBPRA0089 NC_006370.1 92772 93332 R hypothetical protein complement(92772..93332) Photobacterium profundum SS9 3125110 YP_128337.1 CDS PBPRA0090 NC_006370.1 93379 94005 R TetR family transcriptional regulator complement(93379..94005) Photobacterium profundum SS9 3125060 YP_128338.1 CDS PBPRA0091 NC_006370.1 94145 96166 D ATP-dependent DNA helicase Rep 94145..96166 Photobacterium profundum SS9 3122283 YP_128339.1 CDS PBPRA0092 NC_006370.1 96262 96672 R cytochrome c5 complement(96262..96672) Photobacterium profundum SS9 3122525 YP_128340.1 CDS PBPRA0098 NC_006370.1 98233 99951 D peptide ABC transporter, ATP-binding protein 98233..99951 Photobacterium profundum SS9 3123938 YP_128341.1 CDS PBPRA0099 NC_006370.1 100062 101621 D peptide ABC transporter,periplasmic peptide-binding protein 100062..101621 Photobacterium profundum SS9 3122945 YP_128342.1 CDS PBPRA0100 NC_006370.1 101704 102681 D peptide ABC transporter 101704..102681 Photobacterium profundum SS9 3124757 YP_128343.1 CDS PBPRA0101 NC_006370.1 102685 103626 D peptide ABC transporter, permease protein 102685..103626 Photobacterium profundum SS9 3123812 YP_128344.1 CDS ccrB NC_006370.1 104006 104389 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(104006..104389) Photobacterium profundum SS9 3123962 YP_128345.1 CDS PBPRA0104 NC_006370.1 104704 105984 D hypothetical protein 104704..105984 Photobacterium profundum SS9 3123252 YP_128346.1 CDS PBPRA0105 NC_006370.1 106057 106479 D hypothetical protein 106057..106479 Photobacterium profundum SS9 3122939 YP_128347.1 CDS PBPRA0106 NC_006370.1 106855 108777 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 106855..108777 Photobacterium profundum SS9 3123101 YP_128348.1 CDS thiE NC_006370.1 108777 110048 D Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 108777..110048 Photobacterium profundum SS9 3123087 YP_128349.1 CDS PBPRA0108 NC_006370.1 110035 110811 D molybdopterin biosynthesis MoeB protein 110035..110811 Photobacterium profundum SS9 3124788 YP_128350.1 CDS thiG NC_006370.1 111057 111827 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 111057..111827 Photobacterium profundum SS9 3125384 YP_128351.1 CDS thiH NC_006370.1 111837 112949 D in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 111837..112949 Photobacterium profundum SS9 3123099 YP_128352.1 CDS PBPRA0111 NC_006370.1 113086 114900 R aminopeptidase P complement(113086..114900) Photobacterium profundum SS9 3124780 YP_128353.1 CDS PBPRA0112 NC_006370.1 115072 116088 R LysR family transcriptional regulator complement(115072..116088) Photobacterium profundum SS9 3124459 YP_128354.1 CDS PBPRA0113 NC_006370.1 116135 117355 D multidrug resistance protein 116135..117355 Photobacterium profundum SS9 3123377 YP_128355.1 CDS PBPRA0114 NC_006370.1 117455 118357 R hypothetical protein complement(117455..118357) Photobacterium profundum SS9 3122781 YP_128356.1 CDS PBPRA0115 NC_006370.1 118582 120120 D hypothetical protein 118582..120120 Photobacterium profundum SS9 3122951 YP_128357.1 CDS PBPRA0116 NC_006370.1 120259 120951 D ubiquinone/menaquinone biosynthesis methlytransferase UbiE 120259..120951 Photobacterium profundum SS9 3124028 YP_128358.1 CDS PBPRA0117 NC_006370.1 120959 121570 D hypothetical protein 120959..121570 Photobacterium profundum SS9 3124515 YP_128359.1 CDS ubiB NC_006370.1 121567 123204 D an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; ubiquinone biosynthesis protein UbiB 121567..123204 Photobacterium profundum SS9 3124433 YP_128360.1 CDS PBPRA0119 NC_006370.1 123288 123551 D TatA protein 123288..123551 Photobacterium profundum SS9 3124239 YP_128361.1 CDS PBPRA0120 NC_006370.1 123555 123893 D mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase 123555..123893 Photobacterium profundum SS9 3124623 YP_128362.1 CDS PBPRA0121 NC_006370.1 123905 124666 D hypothetical protein 123905..124666 Photobacterium profundum SS9 3123554 YP_128363.1 CDS PBPRA0122 NC_006370.1 124833 125546 D tatD gene product 124833..125546 Photobacterium profundum SS9 3124294 YP_128364.1 CDS PBPRA0123 NC_006370.1 125675 126727 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 125675..126727 Photobacterium profundum SS9 3122870 YP_128365.1 CDS PBPRA0124 NC_006370.1 126847 127722 R MadN protein complement(126847..127722) Photobacterium profundum SS9 3125114 YP_128366.1 CDS PBPRA0125 NC_006370.1 127911 128333 R universal stress protein A complement(127911..128333) Photobacterium profundum SS9 3122096 YP_128367.1 CDS PBPRA0126 NC_006370.1 128586 129113 D ferritin 128586..129113 Photobacterium profundum SS9 3122196 YP_128368.1 CDS PBPRA0127 NC_006370.1 129166 129528 D ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein UspB 129166..129528 Photobacterium profundum SS9 3124967 YP_128369.1 CDS PBPRA0128 NC_006370.1 129642 130739 D hypothetical protein 129642..130739 Photobacterium profundum SS9 3125102 YP_128370.1 CDS PBPRA0129 NC_006370.1 130868 132055 D hypothetical protein 130868..132055 Photobacterium profundum SS9 3125305 YP_128371.1 CDS PBPRA0130 NC_006370.1 132343 132858 D hypothetical protein 132343..132858 Photobacterium profundum SS9 3123406 YP_128372.1 CDS PBPRA0131 NC_006370.1 132950 133549 R TetR family transcriptional regulator complement(132950..133549) Photobacterium profundum SS9 3124994 YP_128373.1 CDS PBPRA0132 NC_006370.1 133571 135004 R aldehyde dehydrogenase complement(133571..135004) Photobacterium profundum SS9 3125162 YP_128374.1 CDS PBPRA0133 NC_006370.1 135158 135739 R hypothetical protein complement(135158..135739) Photobacterium profundum SS9 3125057 YP_128375.1 CDS PBPRA0134 NC_006370.1 135850 136950 R hypothetical protein complement(135850..136950) Photobacterium profundum SS9 3125135 YP_128376.1 CDS PBPRA0135 NC_006370.1 136978 137469 D hypothetical protein 136978..137469 Photobacterium profundum SS9 3123584 YP_128377.1 CDS PBPRA0136 NC_006370.1 137550 138383 R hypothetical protein complement(137550..138383) Photobacterium profundum SS9 3125281 YP_128378.1 CDS PBPRA0137 NC_006370.1 138484 139488 R lysophospholipase complement(138484..139488) Photobacterium profundum SS9 3125231 YP_128379.1 CDS rhtB NC_006370.1 139760 140377 D homoserine/homoserine lactone efflux protein 139760..140377 Photobacterium profundum SS9 3125337 YP_128380.1 CDS PBPRA0139 NC_006370.1 140419 141633 D hypothetical protein 140419..141633 Photobacterium profundum SS9 3123763 YP_128381.1 CDS PBPRA0140 NC_006370.1 141644 142528 R hypothetical protein complement(141644..142528) Photobacterium profundum SS9 3123055 YP_128382.1 CDS PBPRA0141 NC_006370.1 142627 143508 R LysR family transcriptional regulator complement(142627..143508) Photobacterium profundum SS9 3124037 YP_128383.1 CDS PBPRA0142 NC_006370.1 143705 145306 R efflux pump component MtrF complement(143705..145306) Photobacterium profundum SS9 3123777 YP_128384.1 CDS PBPRA0143 NC_006370.1 145831 146553 D oxidoreductase 145831..146553 Photobacterium profundum SS9 3122831 YP_128385.1 CDS PBPRA0144 NC_006370.1 146708 147712 D hypothetical protein 146708..147712 Photobacterium profundum SS9 3124784 YP_128386.1 CDS PBPRA0145 NC_006370.1 147790 148122 R hypothetical protein complement(147790..148122) Photobacterium profundum SS9 3124668 YP_128387.1 CDS PBPRA0146 NC_006370.1 148479 148844 D hypothetical protein 148479..148844 Photobacterium profundum SS9 3122635 YP_128388.1 CDS PBPRA0147 NC_006370.1 150100 150774 D hypothetical protein 150100..150774 Photobacterium profundum SS9 3123363 YP_128389.1 CDS PBPRA0148 NC_006370.1 151155 151466 D hypothetical protein 151155..151466 Photobacterium profundum SS9 3124201 YP_128390.1 CDS PBPRA0149 NC_006370.1 151588 151830 D hypothetical protein 151588..151830 Photobacterium profundum SS9 3125194 YP_128391.1 CDS PBPRA0150 NC_006370.1 151996 152589 D hypothetical protein 151996..152589 Photobacterium profundum SS9 3125105 YP_128392.1 CDS PBPRA0151 NC_006370.1 152677 152943 R hypothetical protein complement(152677..152943) Photobacterium profundum SS9 3125301 YP_128393.1 CDS PBPRA0152 NC_006370.1 152940 153545 R hypothetical protein complement(152940..153545) Photobacterium profundum SS9 3124864 YP_128394.1 CDS PBPRA0153 NC_006370.1 153630 154913 D cell division protein FtsY 153630..154913 Photobacterium profundum SS9 3125027 YP_128395.1 CDS PBPRA0154 NC_006370.1 155569 156501 D cell division protein FtsX 155569..156501 Photobacterium profundum SS9 3125276 YP_128396.1 CDS PBPRA0155 NC_006370.1 156677 157525 D binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 156677..157525 Photobacterium profundum SS9 3123122 YP_128397.1 CDS glpE NC_006370.1 158146 158478 D belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase 158146..158478 Photobacterium profundum SS9 3124917 YP_128398.1 CDS PBPRA0157 NC_006370.1 158520 159362 D hypothetical protein 158520..159362 Photobacterium profundum SS9 3124489 YP_128399.1 CDS glpT NC_006370.1 159736 161106 D catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; sn-glycerol-3-phosphate transporter 159736..161106 Photobacterium profundum SS9 3122367 YP_128400.1 CDS PBPRA0159 NC_006370.1 161204 161983 D glycerol-3-phosphate repressor protein 161204..161983 Photobacterium profundum SS9 3122001 YP_128401.1 CDS glpD NC_006370.1 162247 163785 D in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 162247..163785 Photobacterium profundum SS9 3123919 YP_128402.1 CDS PBPRA0161 NC_006370.1 163921 164337 R flagellar basal body protein FliL complement(163921..164337) Photobacterium profundum SS9 3124384 YP_128403.1 CDS PBPRA0162 NC_006370.1 164506 165048 D chorismate--pyruvate lyase 164506..165048 Photobacterium profundum SS9 3124988 YP_128404.1 CDS ubiA NC_006370.1 165042 165905 D catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 165042..165905 Photobacterium profundum SS9 3122264 YP_128405.2 CDS PBPRA0164 NC_006370.1 166431 168860 R PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase complement(166431..168860) Photobacterium profundum SS9 3123993 YP_128406.1 CDS PBPRA0165 NC_006370.1 169235 169813 D Represses a number of genes involved in the response to DNA damage; LexA repressor 169235..169813 Photobacterium profundum SS9 3124954 YP_128407.1 CDS PBPRA0166 NC_006370.1 169925 170722 D O-methyltransferase-relateprotein 169925..170722 Photobacterium profundum SS9 3122936 YP_128408.1 CDS PBPRA0167 NC_006370.1 170974 172122 D cytochrome c oxidase, subunit II 170974..172122 Photobacterium profundum SS9 3122151 YP_128409.1 CDS PBPRA0168 NC_006370.1 172137 173801 D cytochrome c oxidase, subunit I 172137..173801 Photobacterium profundum SS9 3123581 YP_128410.1 CDS PBPRA0169 NC_006370.1 173857 174447 D involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 173857..174447 Photobacterium profundum SS9 3122345 YP_128411.1 CDS PBPRA0170 NC_006370.1 174467 175384 D cytochrome c oxidase subunit III 174467..175384 Photobacterium profundum SS9 3123744 YP_128412.1 CDS PBPRA0171 NC_006370.1 175699 176388 D hypothetical protein 175699..176388 Photobacterium profundum SS9 3123224 YP_128413.1 CDS PBPRA0172 NC_006370.1 176423 176986 D hypothetical protein 176423..176986 Photobacterium profundum SS9 3122153 YP_128414.1 CDS PBPRA0173 NC_006370.1 177044 178105 D cytochrome c oxidase assembly protein 177044..178105 Photobacterium profundum SS9 3121951 YP_128415.1 CDS PBPRA0174 NC_006370.1 178017 179048 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 178017..179048 Photobacterium profundum SS9 3121987 YP_128416.1 CDS PBPRA0175 NC_006370.1 179146 180495 D DNA-damage-inducible protein F 179146..180495 Photobacterium profundum SS9 3122145 YP_128417.1 CDS PBPRA0176 NC_006370.1 180516 180983 D hypothetical protein 180516..180983 Photobacterium profundum SS9 3122920 YP_128418.2 CDS PBPRA0177 NC_006370.1 181329 181907 R cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; DNA uptake protein complement(181329..181907) Photobacterium profundum SS9 3122248 YP_128419.1 CDS PBPRA0178 NC_006370.1 182043 182756 R amidophosphoribosyltransferase complement(182043..182756) Photobacterium profundum SS9 3123585 YP_128420.1 CDS PBPRA0179 NC_006370.1 182815 183579 D bioH protein 182815..183579 Photobacterium profundum SS9 3122504 YP_128421.1 CDS PBPRA0180 NC_006370.1 183686 184066 D hypothetical protein 183686..184066 Photobacterium profundum SS9 3123517 YP_128422.1 CDS PBPRA0181 NC_006370.1 184158 184622 D hypothetical protein 184158..184622 Photobacterium profundum SS9 3123147 YP_128423.1 CDS PBPRA0182 NC_006370.1 184715 187093 R hypothetical protein complement(184715..187093) Photobacterium profundum SS9 3125094 YP_128424.1 CDS greB NC_006370.1 187189 187659 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB complement(187189..187659) Photobacterium profundum SS9 3123678 YP_128425.1 CDS ompR NC_006370.1 187956 188675 D part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 187956..188675 Photobacterium profundum SS9 3125354 YP_128426.1 CDS envZ NC_006370.1 188679 190010 D membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein 188679..190010 Photobacterium profundum SS9 3124679 YP_128427.1 CDS PBPRA0186 NC_006370.1 190071 191450 R xanthine/uracil permease complement(190071..191450) Photobacterium profundum SS9 3124483 YP_128428.1 CDS PBPRA0187 NC_006370.1 191928 194021 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(191928..194021) Photobacterium profundum SS9 3122680 YP_128429.2 CDS PBPRA0188 NC_006370.1 194046 194750 R specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase complement(194046..194750) Photobacterium profundum SS9 3123116 YP_128430.1 CDS PBPRA0189 NC_006370.1 194849 196960 R bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase complement(194849..196960) Photobacterium profundum SS9 3123690 YP_128431.1 CDS rpoZ NC_006370.1 196979 197263 R promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(196979..197263) Photobacterium profundum SS9 3123597 YP_128432.1 CDS gmk NC_006370.1 197313 197939 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(197313..197939) Photobacterium profundum SS9 3123975 YP_128433.1 CDS PBPRA0192 NC_006370.1 198329 198619 D hypothetical protein 198329..198619 Photobacterium profundum SS9 3122937 YP_128434.1 CDS PBPRA0193 NC_006370.1 198609 199934 D hypothetical protein 198609..199934 Photobacterium profundum SS9 3124823 YP_128435.1 CDS PBPRA0194 NC_006370.1 199959 200966 D hypothetical protein 199959..200966 Photobacterium profundum SS9 3122499 YP_128436.1 CDS PBPRA0195 NC_006370.1 201484 203283 D hypothetical protein 201484..203283 Photobacterium profundum SS9 3122698 YP_128437.1 CDS PBPRA0196 NC_006370.1 203299 205680 D hypothetical protein 203299..205680 Photobacterium profundum SS9 3123921 YP_128438.1 CDS PBPRA0197 NC_006370.1 205871 206734 R hypothetical protein complement(205871..206734) Photobacterium profundum SS9 3125519 YP_128439.1 CDS rph NC_006370.1 206991 207707 D RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 206991..207707 Photobacterium profundum SS9 3125319 YP_128440.1 CDS pyrE NC_006370.1 208098 208739 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 208098..208739 Photobacterium profundum SS9 3125007 YP_128441.1 CDS slmA NC_006370.1 208898 209488 R FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein complement(208898..209488) Photobacterium profundum SS9 3125104 YP_128442.1 CDS PBPRA0201 NC_006370.1 209751 210992 R catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase complement(209751..210992) Photobacterium profundum SS9 3125238 YP_128443.1 CDS radC NC_006370.1 211238 211912 D Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 211238..211912 Photobacterium profundum SS9 3124998 YP_128444.1 CDS PBPRA0203 NC_006370.1 212070 212321 D ribosomal protein L28 212070..212321 Photobacterium profundum SS9 3125342 YP_128445.1 CDS rpmG NC_006370.1 212336 212503 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 212336..212503 Photobacterium profundum SS9 3125498 YP_128446.1 CDS PBPRA0205 NC_006370.1 212702 213193 D hypothetical protein 212702..213193 Photobacterium profundum SS9 3125344 YP_128447.1 CDS PBPRA0206 NC_006370.1 213233 214042 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 213233..214042 Photobacterium profundum SS9 3125511 YP_128448.1 CDS PBPRA0207 NC_006370.1 214187 215191 D nucleotide sugar epimerase 214187..215191 Photobacterium profundum SS9 3122396 YP_128449.1 CDS coaD NC_006370.1 215260 215751 R Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase complement(215260..215751) Photobacterium profundum SS9 3125326 YP_128450.1 CDS PBPRA0209 NC_006370.1 215772 216824 R lipopolysaccharide biosynthesis protein complement(215772..216824) Photobacterium profundum SS9 3122628 YP_128451.1 CDS PBPRA0210 NC_006370.1 217087 217797 D catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase 217087..217797 Photobacterium profundum SS9 3122637 YP_128452.1 CDS PBPRA0211 NC_006370.1 217776 219065 R catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase complement(217776..219065) Photobacterium profundum SS9 3124266 YP_128453.1 CDS PBPRA0212 NC_006370.1 219177 220241 D hypothetical protein 219177..220241 Photobacterium profundum SS9 3123030 YP_128454.1 CDS PBPRA0213 NC_006370.1 220308 221072 D lipopolysaccharide biosynthesis glycosyltransferase 220308..221072 Photobacterium profundum SS9 3123631 YP_128455.1 CDS PBPRA0214 NC_006370.1 221099 222016 D hypothetical protein 221099..222016 Photobacterium profundum SS9 3124523 YP_128456.1 CDS PBPRA0215 NC_006370.1 222045 223181 D glycosyl transferase 222045..223181 Photobacterium profundum SS9 3124492 YP_128457.1 CDS PBPRA0216 NC_006370.1 223217 224293 R capsular polysaccharide biosynthesis protein complement(223217..224293) Photobacterium profundum SS9 3123810 YP_128458.1 CDS PBPRA0217 NC_006370.1 224296 225057 R Lex2B protein (lipooligosaccharide 5G8 epitope biosynthesis-associated protein) complement(224296..225057) Photobacterium profundum SS9 3124545 YP_128459.1 CDS PBPRA0218 NC_006370.1 225051 226169 R O-antigen ligase complement(225051..226169) Photobacterium profundum SS9 3124372 YP_128460.1 CDS PBPRA0219 NC_006370.1 226241 227194 R Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase complement(226241..227194) Photobacterium profundum SS9 3124671 YP_128461.1 CDS rfaD NC_006370.1 227211 228155 R catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; ADP-L-glycero-D-manno-heptose-6-epimerase complement(227211..228155) Photobacterium profundum SS9 3124324 YP_128462.1 CDS PBPRA0221 NC_006370.1 228275 228922 D transcriptional regulator 228275..228922 Photobacterium profundum SS9 3124582 YP_128463.1 CDS PBPRA0222 NC_006370.1 229011 229826 R hypothetical protein complement(229011..229826) Photobacterium profundum SS9 3123918 YP_128464.1 CDS PBPRA0223 NC_006370.1 230096 231268 R NlpD-related protein M3 family7 unassigned peptidase complement(230096..231268) Photobacterium profundum SS9 3123380 YP_128465.1 CDS PBPRA0224 NC_006370.1 231277 232833 R catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase complement(231277..232833) Photobacterium profundum SS9 3123978 YP_128466.1 CDS PBPRA0225 NC_006370.1 233245 233685 D hypothetical protein 233245..233685 Photobacterium profundum SS9 3123983 YP_128467.1 CDS PBPRA0226 NC_006370.1 233802 234275 D molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 233802..234275 Photobacterium profundum SS9 3125317 YP_128468.1 CDS gpsA NC_006370.1 234292 235308 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 234292..235308 Photobacterium profundum SS9 3125307 YP_128469.1 CDS cysE NC_006370.1 235522 236343 D catalyzes the O-acetylation of serine; serine acetyltransferase 235522..236343 Photobacterium profundum SS9 3125256 YP_128470.1 CDS PBPRA0229 NC_006370.1 236446 236925 R rRNA methylase complement(236446..236925) Photobacterium profundum SS9 3124066 YP_128471.1 CDS cpxA NC_006370.1 237020 238387 R part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; two-component sensor protein complement(237020..238387) Photobacterium profundum SS9 3125449 YP_128472.1 CDS PBPRA0231 NC_006370.1 238387 238875 R transcriptional regulator CpxR complement(238387..238875) Photobacterium profundum SS9 3123959 YP_128473.1 CDS PBPRA0232 NC_006370.1 238838 239083 R transcriptional regulator CpxR complement(238838..239083) Photobacterium profundum SS9 3123146 YP_128474.1 CDS cpxP NC_006370.1 239289 239771 D repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA; CpxP is degraded by DegP protease especially in the presence of misfolded substrates; periplasmic repressor CpxP 239289..239771 Photobacterium profundum SS9 3123920 YP_128475.1 CDS pfkA NC_006370.1 240156 241118 D catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 240156..241118 Photobacterium profundum SS9 3122183 YP_128476.1 CDS tpiA NC_006370.1 241320 242108 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(241320..242108) Photobacterium profundum SS9 3124564 YP_128477.1 CDS PBPRA0236 NC_006370.1 242441 242788 D 5-carboxymethyl-2-hydroxymuconate delta isomerase 242441..242788 Photobacterium profundum SS9 3125048 YP_128478.1 CDS PBPRA0237 NC_006370.1 242785 243135 R hypothetical protein complement(242785..243135) Photobacterium profundum SS9 3122622 YP_128479.1 CDS PBPRA0238 NC_006370.1 243300 244058 R ferredoxin-NADP reductase complement(243300..244058) Photobacterium profundum SS9 3122866 YP_128480.1 CDS PBPRA0239 NC_006370.1 244076 244696 R hypothetical protein complement(244076..244696) Photobacterium profundum SS9 3122201 YP_128481.2 CDS glpX NC_006370.1 244912 245919 R type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II complement(244912..245919) Photobacterium profundum SS9 3122660 YP_128482.1 CDS PBPRA0241 NC_006370.1 246571 246816 R hypothetical protein complement(246571..246816) Photobacterium profundum SS9 3122032 YP_128483.1 CDS PBPRA0242 NC_006370.1 246865 247224 R hypothetical protein complement(246865..247224) Photobacterium profundum SS9 3123203 YP_128484.1 CDS PBPRA0243 NC_006370.1 247372 248826 R hypothetical protein complement(247372..248826) Photobacterium profundum SS9 3123033 YP_128485.1 CDS PBPRA0244 NC_006370.1 249484 249972 D hypothetical protein 249484..249972 Photobacterium profundum SS9 3124152 YP_128486.1 CDS PBPRA0245 NC_006370.1 249960 251156 R transposase complement(249960..251156) Photobacterium profundum SS9 3122807 YP_128487.1 CDS PBPRA0246 NC_006370.1 251502 252071 D toxin secretion, membrane fusionprotein 251502..252071 Photobacterium profundum SS9 3123401 YP_128488.1 CDS PBPRA0247 NC_006370.1 252068 254203 D toxin transporter 252068..254203 Photobacterium profundum SS9 3123734 YP_128489.1 CDS glpK NC_006370.1 254312 255838 R Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase complement(254312..255838) Photobacterium profundum SS9 3125073 YP_128490.1 CDS PBPRA0249 NC_006370.1 255880 256734 R glycerol uptake facilitator protein complement(255880..256734) Photobacterium profundum SS9 3122313 YP_128491.1 CDS PBPRA0250 NC_006370.1 257899 258150 D hypothetical protein 257899..258150 Photobacterium profundum SS9 3122915 YP_128492.1 CDS PBPRA0251 NC_006370.1 258212 258697 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA complement(258212..258697) Photobacterium profundum SS9 3123234 YP_128493.1 CDS PBPRA0252 NC_006370.1 258843 259793 R catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(258843..259793) Photobacterium profundum SS9 3124755 YP_128494.1 CDS hslU NC_006370.1 259912 261243 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(259912..261243) Photobacterium profundum SS9 3122293 YP_128495.1 CDS PBPRA0254 NC_006370.1 261254 261781 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(261254..261781) Photobacterium profundum SS9 3124654 YP_128496.1 CDS PBPRA0255 NC_006370.1 261939 262568 R cell division protein complement(261939..262568) Photobacterium profundum SS9 3123160 YP_128497.1 CDS PBPRA0256 NC_006370.1 262733 263737 R negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins; DNA-binding transcriptional regulator CytR complement(262733..263737) Photobacterium profundum SS9 3124202 YP_128498.1 CDS PBPRA0257 NC_006370.1 263909 266110 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(263909..266110) Photobacterium profundum SS9 3123809 YP_128499.1 CDS rpmE NC_006370.1 266433 266645 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 266433..266645 Photobacterium profundum SS9 3123736 YP_128500.1 CDS PBPRA0259 NC_006370.1 266979 268229 D malate oxidoreductase 266979..268229 Photobacterium profundum SS9 3122724 YP_128501.1 CDS PBPRA0260 NC_006370.1 268339 268656 R when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ complement(268339..268656) Photobacterium profundum SS9 3122834 YP_128502.1 CDS PBPRA0261 NC_006370.1 268837 270003 D catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase 268837..270003 Photobacterium profundum SS9 3125269 YP_128503.1 CDS metL NC_006370.1 270015 272420 D multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 270015..272420 Photobacterium profundum SS9 3124550 YP_128504.1 CDS metF NC_006370.1 272709 273608 D MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 272709..273608 Photobacterium profundum SS9 3122051 YP_128505.1 CDS PBPRA0264 NC_006370.1 273690 274256 R transcriptional regulator complement(273690..274256) Photobacterium profundum SS9 3124155 YP_128506.2 CDS PBPRA0265 NC_006370.1 274693 277323 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase complement(274693..277323) Photobacterium profundum SS9 3122446 YP_128507.1 CDS argC NC_006370.1 278072 279085 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 278072..279085 Photobacterium profundum SS9 3125107 YP_128508.1 CDS PBPRA0267 NC_006370.1 279096 279878 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 279096..279878 Photobacterium profundum SS9 3124865 YP_128509.1 CDS PBPRA0268 NC_006370.1 279978 281192 D catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 279978..281192 Photobacterium profundum SS9 3122122 YP_128510.1 CDS PBPRA0269 NC_006370.1 281305 283182 D catalyzes the formation of arginine from (N-L-arginino)succinate and the formation of N-acetylglutamate from glutamate and acetyl-CoA; bifunctional argininosuccinate lyase/N-acetylglutamate synthase 281305..283182 Photobacterium profundum SS9 3122615 YP_128511.1 CDS PBPRA0270 NC_006370.1 283267 283524 R hypothetical protein complement(283267..283524) Photobacterium profundum SS9 3123578 YP_128512.2 CDS PBPRA0271 NC_006370.1 283661 285112 R Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(283661..285112) Photobacterium profundum SS9 3124116 YP_128513.1 CDS PBPRA0272 NC_006370.1 285231 285959 R peroxiredoxin/glutaredoxin family protein complement(285231..285959) Photobacterium profundum SS9 3122758 YP_128514.1 CDS PBPRA0273 NC_006370.1 286122 287021 D Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA; DNA-binding transcriptional regulator OxyR 286122..287021 Photobacterium profundum SS9 3124517 YP_128515.1 CDS PBPRA0274 NC_006370.1 287154 289727 R penicillin-binding protein 1A complement(287154..289727) Photobacterium profundum SS9 3124052 YP_128516.1 CDS PBPRA0275 NC_006370.1 289879 290913 D fimbrial assembly protein PilM 289879..290913 Photobacterium profundum SS9 3122169 YP_128517.1 CDS PBPRA0276 NC_006370.1 290910 291569 D fimbrial assembly protein PilN 290910..291569 Photobacterium profundum SS9 3122490 YP_128518.1 CDS PBPRA0277 NC_006370.1 291562 292161 D fimbrial assembly protein PilO 291562..292161 Photobacterium profundum SS9 3125291 YP_128519.1 CDS PBPRA0278 NC_006370.1 292158 292679 D fimbrial assembly protein PilP 292158..292679 Photobacterium profundum SS9 3122359 YP_128520.1 CDS PBPRA0279 NC_006370.1 292702 294405 D fimbrial assembly protein 292702..294405 Photobacterium profundum SS9 3124287 YP_128521.2 CDS aroK NC_006370.1 294569 295087 D type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I 294569..295087 Photobacterium profundum SS9 3124704 YP_128522.1 CDS aroB NC_006370.1 295111 296190 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 295111..296190 Photobacterium profundum SS9 3122030 YP_128523.1 CDS PBPRA0282 NC_006370.1 296205 297713 D DamX-like protein 296205..297713 Photobacterium profundum SS9 3122903 YP_128524.1 CDS PBPRA0283 NC_006370.1 297828 298664 D DNA adenine methylase 297828..298664 Photobacterium profundum SS9 3125330 YP_128525.1 CDS PBPRA0284 NC_006370.1 299052 299714 D catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 299052..299714 Photobacterium profundum SS9 3123833 YP_128526.1 CDS PBPRA0285 NC_006370.1 299717 300406 D catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 299717..300406 Photobacterium profundum SS9 3123369 YP_128527.1 CDS PBPRA0286 NC_006370.1 300504 301523 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 300504..301523 Photobacterium profundum SS9 3124129 YP_128528.1 CDS PBPRA0287 NC_006370.1 301785 304130 D extracellular nuclease 301785..304130 Photobacterium profundum SS9 3124615 YP_128529.1 CDS PBPRA0288 NC_006370.1 304238 304816 D aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity; para-aminobenzoate synthase component II 304238..304816 Photobacterium profundum SS9 3123124 YP_128530.1 CDS argD NC_006370.1 305173 306390 D DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 305173..306390 Photobacterium profundum SS9 3124888 YP_128531.1 CDS PBPRA0290 NC_006370.1 306619 307635 D arginine/ornithine succinyltransferase 306619..307635 Photobacterium profundum SS9 3124651 YP_128532.1 CDS astD NC_006370.1 307727 309184 D a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 307727..309184 Photobacterium profundum SS9 3123901 YP_128533.1 CDS PBPRA0292 NC_006370.1 309272 310063 D hypothetical protein 309272..310063 Photobacterium profundum SS9 3124635 YP_128534.1 CDS PBPRA0293 NC_006370.1 310573 311205 R complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein complement(310573..311205) Photobacterium profundum SS9 3122073 YP_128535.1 CDS PBPRA0294 NC_006370.1 311443 311859 D hypothetical protein 311443..311859 Photobacterium profundum SS9 3123588 YP_128536.1 CDS PBPRA0295 NC_006370.1 311949 312818 R phosphoribulokinase complement(311949..312818) Photobacterium profundum SS9 3125029 YP_128537.1 CDS PBPRA0296 NC_006370.1 312941 313165 R hypothetical protein complement(312941..313165) Photobacterium profundum SS9 3125285 YP_128538.1 CDS PBPRA0297 NC_006370.1 313237 314199 R hydrolase complement(313237..314199) Photobacterium profundum SS9 3122187 YP_128539.1 CDS PBPRA0298 NC_006370.1 314235 315635 R transcriptional regulator complement(314235..315635) Photobacterium profundum SS9 3123632 YP_128540.1 CDS PBPRA0299 NC_006370.1 315780 316382 D hypothetical protein 315780..316382 Photobacterium profundum SS9 3125179 YP_128541.1 CDS PBPRA0300 NC_006370.1 316404 316877 R hypothetical protein complement(316404..316877) Photobacterium profundum SS9 3122322 YP_128542.1 CDS PBPRA0301 NC_006370.1 316864 318789 R ABC transporter, ATP-binding protein complement(316864..318789) Photobacterium profundum SS9 3122529 YP_128543.1 CDS PBPRA0302 NC_006370.1 318937 319611 D required for KefB activity; glutathione-regulated potassium-efflux system ancillary protein KefG 318937..319611 Photobacterium profundum SS9 3122460 YP_128544.1 CDS PBPRA0303 NC_006370.1 319601 321403 D involved in potassium efflux; glutathione-regulated potassium-efflux system protein KefB 319601..321403 Photobacterium profundum SS9 3122217 YP_128545.1 CDS PBPRA0304 NC_006370.1 321499 321717 D hypothetical protein 321499..321717 Photobacterium profundum SS9 3124660 YP_128546.1 CDS PBPRA0305 NC_006370.1 321827 322369 D peptidyl-prolyl cis-trans isomerase 321827..322369 Photobacterium profundum SS9 3125004 YP_128547.1 CDS PBPRA0306 NC_006370.1 322494 322730 R slyX protein (slyX) complement(322494..322730) Photobacterium profundum SS9 3125433 YP_128548.1 CDS PBPRA0307 NC_006370.1 322767 323765 R hypothetical protein complement(322767..323765) Photobacterium profundum SS9 3122608 YP_128549.1 CDS PBPRA0308 NC_006370.1 323925 324743 D FKBP-type peptidyl-prolyl cis-trans isomerase 1 323925..324743 Photobacterium profundum SS9 3124717 YP_128550.1 CDS PBPRA0309 NC_006370.1 324919 325656 D hypothetical protein 324919..325656 Photobacterium profundum SS9 3125211 YP_128551.1 CDS PBPRA0310 NC_006370.1 325653 326045 D in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD 325653..326045 Photobacterium profundum SS9 3125339 YP_128552.1 CDS PBPRA0311 NC_006370.1 326082 326438 D hypothetical protein 326082..326438 Photobacterium profundum SS9 3125159 YP_128553.1 CDS PBPRA0312 NC_006370.1 326446 326739 D hypothetical protein 326446..326739 Photobacterium profundum SS9 3125051 YP_128554.1 CDS rpsL NC_006370.1 326919 327293 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 326919..327293 Photobacterium profundum SS9 3123069 YP_128555.1 CDS PBPRA0314 NC_006370.1 327386 327856 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 327386..327856 Photobacterium profundum SS9 3125044 YP_128556.1 CDS PBPRA0315 NC_006370.1 327935 330031 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 327935..330031 Photobacterium profundum SS9 3125243 YP_128557.1 CDS tuf NC_006370.1 330133 331317 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 330133..331317 Photobacterium profundum SS9 3125348 YP_128558.1 CDS PBPRA0317 NC_006370.1 331561 331749 D bacterioferritin-associated ferredoxin 331561..331749 Photobacterium profundum SS9 3122128 YP_128559.1 CDS PBPRA0318 NC_006370.1 331836 332312 D bacterioferritin 331836..332312 Photobacterium profundum SS9 3125258 YP_128560.1 CDS rpsJ NC_006370.1 332677 332988 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 332677..332988 Photobacterium profundum SS9 3124675 YP_128561.1 CDS rplC NC_006370.1 333001 333630 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 333001..333630 Photobacterium profundum SS9 3122428 YP_128562.1 CDS rplD NC_006370.1 333646 334248 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 333646..334248 Photobacterium profundum SS9 3122184 YP_128563.1 CDS rplW NC_006370.1 334245 334547 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 334245..334547 Photobacterium profundum SS9 3122042 YP_128564.1 CDS rplB NC_006370.1 334566 335393 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 334566..335393 Photobacterium profundum SS9 3124216 YP_128565.1 CDS rpsS NC_006370.1 335411 335689 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 335411..335689 Photobacterium profundum SS9 3122663 YP_128566.1 CDS rplV NC_006370.1 335700 336032 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 335700..336032 Photobacterium profundum SS9 3122626 YP_128567.1 CDS rpsC NC_006370.1 336048 336737 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 336048..336737 Photobacterium profundum SS9 3123240 YP_128568.1 CDS rplP NC_006370.1 336749 337159 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 336749..337159 Photobacterium profundum SS9 3122452 YP_128569.1 CDS PBPRA0328 NC_006370.1 337156 337350 D ribosomal protein L29 337156..337350 Photobacterium profundum SS9 3122633 YP_128570.1 CDS PBPRA0329 NC_006370.1 337350 337604 D 30S ribosomal protein S17 337350..337604 Photobacterium profundum SS9 3123046 YP_128571.1 CDS rplN NC_006370.1 337769 338140 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 337769..338140 Photobacterium profundum SS9 3123857 YP_128572.1 CDS rplX NC_006370.1 338152 338466 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 338152..338466 Photobacterium profundum SS9 3123428 YP_128573.1 CDS rplE NC_006370.1 338484 339023 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 338484..339023 Photobacterium profundum SS9 3125332 YP_128574.1 CDS rpsN NC_006370.1 339039 339344 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 339039..339344 Photobacterium profundum SS9 3123519 YP_128575.1 CDS rpsH NC_006370.1 339379 339771 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 339379..339771 Photobacterium profundum SS9 3123196 YP_128576.1 CDS rplF NC_006370.1 339784 340317 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 339784..340317 Photobacterium profundum SS9 3124855 YP_128577.1 CDS rplR NC_006370.1 340327 340680 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 340327..340680 Photobacterium profundum SS9 3124278 YP_128578.1 CDS PBPRA0337 NC_006370.1 340694 341191 D 30S ribosomal protein S5 340694..341191 Photobacterium profundum SS9 3123625 YP_128579.1 CDS rpmD NC_006370.1 341188 341376 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 341188..341376 Photobacterium profundum SS9 3123504 YP_128580.1 CDS rplO NC_006370.1 341382 341816 D late assembly protein; 50S ribosomal protein L15 341382..341816 Photobacterium profundum SS9 3123636 YP_128581.1 CDS secY NC_006370.1 341839 343155 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 341839..343155 Photobacterium profundum SS9 3125536 YP_128582.1 CDS rpmJ NC_006370.1 343192 343305 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 343192..343305 Photobacterium profundum SS9 3122817 YP_128583.1 CDS rpsM NC_006370.1 343450 343806 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 343450..343806 Photobacterium profundum SS9 3123813 YP_128584.1 CDS PBPRA0343 NC_006370.1 343826 344215 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 343826..344215 Photobacterium profundum SS9 3125115 YP_128585.2 CDS rpsD NC_006370.1 344243 344863 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 344243..344863 Photobacterium profundum SS9 3122299 YP_128586.1 CDS PBPRA0345 NC_006370.1 344887 345876 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 344887..345876 Photobacterium profundum SS9 3123359 YP_128587.1 CDS rplQ NC_006370.1 345910 346293 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 345910..346293 Photobacterium profundum SS9 3122925 YP_128588.1 CDS PBPRA0347 NC_006370.1 346381 347361 D glycosyltransferase 346381..347361 Photobacterium profundum SS9 3125196 YP_128589.1 CDS PBPRA0348 NC_006370.1 347409 347993 R hypothetical protein complement(347409..347993) Photobacterium profundum SS9 3123879 YP_128590.1 CDS PBPRA0349 NC_006370.1 348101 351055 R periplasmic protein involved in polysaccharide export complement(348101..351055) Photobacterium profundum SS9 3123652 YP_128591.1 CDS PBPRA0350 NC_006370.1 351052 351813 R hypothetical protein complement(351052..351813) Photobacterium profundum SS9 3125157 YP_128592.1 CDS PBPRA0351 NC_006370.1 351831 352142 R anti-anti-sigma regulatory factor complement(351831..352142) Photobacterium profundum SS9 3124139 YP_128593.1 CDS PBPRA0352 NC_006370.1 352200 353993 R intercellular adhesion protein A complement(352200..353993) Photobacterium profundum SS9 3123749 YP_128594.1 CDS PBPRA0353 NC_006370.1 354018 355091 R glycosyltransferase complement(354018..355091) Photobacterium profundum SS9 3121955 YP_128595.1 CDS PBPRA0354 NC_006370.1 355102 356529 R polysaccharide export protein complement(355102..356529) Photobacterium profundum SS9 3123826 YP_128596.1 CDS PBPRA0355 NC_006370.1 356531 356869 R hypothetical protein complement(356531..356869) Photobacterium profundum SS9 3123392 YP_128597.1 CDS PBPRA0356 NC_006370.1 356933 358069 R glycosyltransferase complement(356933..358069) Photobacterium profundum SS9 3123192 YP_128598.1 CDS PBPRA0357 NC_006370.1 358153 359487 R ExoQ family protein complement(358153..359487) Photobacterium profundum SS9 3124593 YP_128599.1 CDS PBPRA0358 NC_006370.1 359787 360533 R transposase complement(359787..360533) Photobacterium profundum SS9 3124496 YP_128600.1 CDS PBPRA0366 NC_006370.1 367296 367859 R transposase and inactivated derivative complement(367296..367859) Photobacterium profundum SS9 3122604 YP_128601.1 CDS PBPRA0367 NC_006370.1 367861 368331 R transposase and inactivated derivative complement(367861..368331) Photobacterium profundum SS9 3122086 YP_128602.1 CDS PBPRA0368 NC_006370.1 368410 368973 R transposase and inactivated derivative complement(368410..368973) Photobacterium profundum SS9 3124908 YP_128603.1 CDS PBPRA0369 NC_006370.1 370017 370961 D catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 370017..370961 Photobacterium profundum SS9 3122271 YP_128604.1 CDS PBPRA0370 NC_006370.1 371009 371875 R hypothetical protein complement(371009..371875) Photobacterium profundum SS9 3122059 YP_128605.1 CDS PBPRA0371 NC_006370.1 372136 372621 R hypothetical protein complement(372136..372621) Photobacterium profundum SS9 3124778 YP_128606.1 CDS PBPRA0372 NC_006370.1 372633 373892 R peptide ABC transporter permease complement(372633..373892) Photobacterium profundum SS9 3125293 YP_128607.1 CDS PBPRA0373 NC_006370.1 373889 374584 R ABC transporter complement(373889..374584) Photobacterium profundum SS9 3124800 YP_128608.1 CDS PBPRA0374 NC_006370.1 374625 375326 R hypothetical protein complement(374625..375326) Photobacterium profundum SS9 3122222 YP_128609.1 CDS PBPRA0375 NC_006370.1 375366 375677 R hypothetical protein complement(375366..375677) Photobacterium profundum SS9 3122578 YP_128610.1 CDS PBPRA0376 NC_006370.1 375752 376306 R transcriptional regulator complement(375752..376306) Photobacterium profundum SS9 3125178 YP_128611.1 CDS PBPRA0377 NC_006370.1 376611 376823 D hypothetical protein 376611..376823 Photobacterium profundum SS9 3122825 YP_128612.1 CDS PBPRA0378 NC_006370.1 376866 377501 R peptide methionine sulfoxide reductase complement(376866..377501) Photobacterium profundum SS9 3124249 YP_128613.1 CDS PBPRA0379 NC_006370.1 377670 379406 D hypothetical protein 377670..379406 Photobacterium profundum SS9 3125010 YP_128614.1 CDS PBPRA0380 NC_006370.1 379403 383158 D hypothetical protein 379403..383158 Photobacterium profundum SS9 3125492 YP_128615.1 CDS PBPRA0381 NC_006370.1 383254 383562 D hypothetical protein 383254..383562 Photobacterium profundum SS9 3122707 YP_128616.1 CDS PBPRA0382 NC_006370.1 383636 384025 R phage shock protein E complement(383636..384025) Photobacterium profundum SS9 3123102 YP_128617.1 CDS PBPRA0383 NC_006370.1 384106 384636 R catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase complement(384106..384636) Photobacterium profundum SS9 3125303 YP_128618.1 CDS PBPRA0384 NC_006370.1 384856 385890 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(384856..385890) Photobacterium profundum SS9 3122844 YP_128619.1 CDS PBPRA0385 NC_006370.1 386067 387425 D UDP-N-acetylmuramate-alanine ligase 386067..387425 Photobacterium profundum SS9 3122647 YP_128620.1 CDS PBPRA0386 NC_006370.1 387447 388067 D catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; aromatic acid decarboxylase 387447..388067 Photobacterium profundum SS9 3125155 YP_128621.1 CDS PBPRA0387 NC_006370.1 388125 388571 R universal stress protein UspA complement(388125..388571) Photobacterium profundum SS9 3123373 YP_128622.1 CDS PBPRA0388 NC_006370.1 388647 391223 R TRAP-type uncharacterized transport system, fused permease component complement(388647..391223) Photobacterium profundum SS9 3125056 YP_128623.1 CDS PBPRA0389 NC_006370.1 391330 392301 R immunogenic protein complement(391330..392301) Photobacterium profundum SS9 3124977 YP_128624.1 CDS PBPRA0390 NC_006370.1 392596 393066 R regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor ArgR complement(392596..393066) Photobacterium profundum SS9 3125442 YP_128625.1 CDS PBPRA0391 NC_006370.1 393419 394357 D oxidizes malate to oxaloacetate; malate dehydrogenase 393419..394357 Photobacterium profundum SS9 3125294 YP_128626.1 CDS PBPRA0392 NC_006370.1 394724 395947 D transposase 394724..395947 Photobacterium profundum SS9 3125098 YP_128627.1 CDS PBPRA0393 NC_006370.1 396110 397081 R octaprenyl-diphosphate synthase complement(396110..397081) Photobacterium profundum SS9 3125210 YP_128628.1 CDS rplU NC_006370.1 397360 397671 D 50S ribosomal protein L21 397360..397671 Photobacterium profundum SS9 3122325 YP_128629.1 CDS rpmA NC_006370.1 397691 397948 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 397691..397948 Photobacterium profundum SS9 3125181 YP_128630.1 CDS PBPRA0396 NC_006370.1 398013 398939 D hypothetical protein 398013..398939 Photobacterium profundum SS9 3122524 YP_128631.1 CDS obgE NC_006370.1 399044 400216 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 399044..400216 Photobacterium profundum SS9 3122213 YP_128632.1 CDS PBPRA0398 NC_006370.1 400402 401193 D hypothetical protein 400402..401193 Photobacterium profundum SS9 3122320 YP_128633.1 CDS PBPRA0399 NC_006370.1 401552 402214 D dihydrofolate reductase 401552..402214 Photobacterium profundum SS9 3122971 YP_128634.1 CDS apaH NC_006370.1 402290 403111 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase complement(402290..403111) Photobacterium profundum SS9 3125460 YP_128635.1 CDS apaG NC_006370.1 403120 403503 R protein associated with Co2+ and Mg2+ efflux; ApaG complement(403120..403503) Photobacterium profundum SS9 3125148 YP_128636.1 CDS ksgA NC_006370.1 403654 404514 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(403654..404514) Photobacterium profundum SS9 3122567 YP_128637.1 CDS pdxA NC_006370.1 404466 405461 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(404466..405461) Photobacterium profundum SS9 3122353 YP_128638.1 CDS PBPRA0404 NC_006370.1 405445 406749 R survival protein SurA complement(405445..406749) Photobacterium profundum SS9 3122528 YP_128639.1 CDS PBPRA0405 NC_006370.1 406796 409162 R determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein complement(406796..409162) Photobacterium profundum SS9 3122083 YP_128640.2 CDS djlA NC_006370.1 409336 410175 D functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 409336..410175 Photobacterium profundum SS9 3124960 YP_128641.1 CDS PBPRA0407 NC_006370.1 410296 411300 R Catalyzes the reduction of sulfopyruvate to (R)-sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate, alpha-ketoglutarate, and to a much lower extent, KHTCA, but not pyruvate. Involved in the biosynthes; D-lactate dehydrogenase complement(410296..411300) Photobacterium profundum SS9 3122230 YP_128642.1 CDS PBPRA0408 NC_006370.1 411383 412102 R ribosomal large subunit pseudouridine synthase A complement(411383..412102) Photobacterium profundum SS9 3122233 YP_128643.1 CDS PBPRA0409 NC_006370.1 412195 415113 R transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA complement(412195..415113) Photobacterium profundum SS9 3123225 YP_128644.1 CDS PBPRA0410 NC_006370.1 415433 416809 D hypothetical protein 415433..416809 Photobacterium profundum SS9 3121947 YP_128645.1 CDS PBPRA0411 NC_006370.1 416829 417566 R thiamine ABC transporter complement(416829..417566) Photobacterium profundum SS9 3123536 YP_128646.1 CDS thiP NC_006370.1 417567 419210 R permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein complement(417567..419210) Photobacterium profundum SS9 3123478 YP_128647.2 CDS tbpA NC_006370.1 419248 420234 R part of the thiamine and TPP transport system tbpA-thiPQ; thiamine transporter substrate binding subunit complement(419248..420234) Photobacterium profundum SS9 3122739 YP_128648.1 CDS PBPRA0414 NC_006370.1 420679 421602 R hypothetical protein complement(420679..421602) Photobacterium profundum SS9 3123795 YP_128649.1 CDS PBPRA0415 NC_006370.1 421851 422243 D hypothetical protein 421851..422243 Photobacterium profundum SS9 3124040 YP_128650.1 CDS leuD NC_006370.1 422616 423218 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit complement(422616..423218) Photobacterium profundum SS9 3122097 YP_128651.1 CDS PBPRA0417 NC_006370.1 423236 424735 R dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit complement(423236..424735) Photobacterium profundum SS9 3124180 YP_128652.1 CDS PBPRA0418 NC_006370.1 424763 425851 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(424763..425851) Photobacterium profundum SS9 3122278 YP_128653.1 CDS PBPRA0419 NC_006370.1 426021 427565 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(426021..427565) Photobacterium profundum SS9 3122657 YP_128654.1 CDS PBPRA0420 NC_006370.1 428209 428853 D transcriptional regulator 428209..428853 Photobacterium profundum SS9 3124100 YP_128655.1 CDS PBPRA0421 NC_006370.1 428850 430193 D hypothetical protein 428850..430193 Photobacterium profundum SS9 3123819 YP_128656.1 CDS PBPRA0422 NC_006370.1 430190 433300 D cation/multidrug efflux pump 430190..433300 Photobacterium profundum SS9 3124145 YP_128657.1 CDS leuO NC_006370.1 433869 434825 D activator for leuABCD operon; member of LysR family of transcriptional activators; leucine transcriptional activator 433869..434825 Photobacterium profundum SS9 3124992 YP_128658.1 CDS PBPRA0424 NC_006370.1 435179 436993 D long-chain-fatty-acid-CoAligase 435179..436993 Photobacterium profundum SS9 3124241 YP_128659.1 CDS PBPRA0425 NC_006370.1 437816 439534 D with IlvH catalyzes the formation of 2-acetolactate from pyruvate; acetolactate synthase 3 catalytic subunit 437816..439534 Photobacterium profundum SS9 3122321 YP_128660.1 CDS PBPRA0426 NC_006370.1 439534 440031 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; acetolactate synthase III small subunit 439534..440031 Photobacterium profundum SS9 3122192 YP_128661.1 CDS PBPRA0427 NC_006370.1 440538 441191 R LuxZ complement(440538..441191) Photobacterium profundum SS9 3122447 YP_128662.1 CDS PBPRA0428 NC_006370.1 441531 442943 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(441531..442943) Photobacterium profundum SS9 3125171 YP_128663.1 CDS PBPRA0430 NC_006370.1 443877 445715 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD complement(443877..445715) Photobacterium profundum SS9 3124743 YP_128664.1 CDS dnaG NC_006370.1 445808 447634 R synthesizes RNA primers at the replication forks; DNA primase complement(445808..447634) Photobacterium profundum SS9 3125121 YP_128665.1 CDS PBPRA0432 NC_006370.1 447690 448133 R hypothetical protein complement(447690..448133) Photobacterium profundum SS9 3123017 YP_128666.1 CDS rpsU NC_006370.1 448160 448375 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(448160..448375) Photobacterium profundum SS9 3124503 YP_128667.1 CDS PBPRA0434 NC_006370.1 448627 449646 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 448627..449646 Photobacterium profundum SS9 3123603 YP_128668.1 CDS PBPRA0435 NC_006370.1 449727 450338 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY complement(449727..450338) Photobacterium profundum SS9 3122101 YP_128669.1 CDS PBPRA0436 NC_006370.1 450567 450926 D dihydroneopterin aldolase 450567..450926 Photobacterium profundum SS9 3124355 YP_128670.1 CDS PBPRA0437 NC_006370.1 450923 451411 D 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 450923..451411 Photobacterium profundum SS9 3124422 YP_128671.1 CDS uppP NC_006370.1 451429 452232 D BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 451429..452232 Photobacterium profundum SS9 3124436 YP_128672.1 CDS cca NC_006370.1 452363 453598 R catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase complement(452363..453598) Photobacterium profundum SS9 3124277 YP_128673.1 CDS PBPRA0440 NC_006370.1 454184 455854 D general secretion pathway protein A 454184..455854 Photobacterium profundum SS9 3124340 YP_128674.1 CDS PBPRA0441 NC_006370.1 455854 456810 D hypothetical protein 455854..456810 Photobacterium profundum SS9 3124880 YP_128675.1 CDS PBPRA0442 NC_006370.1 456896 457513 R hypothetical protein complement(456896..457513) Photobacterium profundum SS9 3123958 YP_128676.1 CDS PBPRA0443 NC_006370.1 457627 458895 R phosphate/sulphate permease complement(457627..458895) Photobacterium profundum SS9 3124214 YP_128677.1 CDS PBPRA0444 NC_006370.1 458928 459608 R phosphate transport regulator complement(458928..459608) Photobacterium profundum SS9 3124090 YP_128678.1 CDS PBPRA0445 NC_006370.1 459770 461311 D hypothetical protein 459770..461311 Photobacterium profundum SS9 3124105 YP_128679.1 CDS PBPRA0446 NC_006370.1 461342 462157 R potassium channel protein complement(461342..462157) Photobacterium profundum SS9 3123885 YP_128680.1 CDS PBPRA0447 NC_006370.1 462339 463940 D methyl-accepting chemotaxis protein 462339..463940 Photobacterium profundum SS9 3123723 YP_128681.1 CDS PBPRA0448 NC_006370.1 464159 467032 D catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 464159..467032 Photobacterium profundum SS9 3123694 YP_128682.1 CDS PBPRA0449 NC_006370.1 467192 468622 D catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 467192..468622 Photobacterium profundum SS9 3122384 YP_128683.1 CDS tolC NC_006370.1 468803 470089 R trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein complement(468803..470089) Photobacterium profundum SS9 3122390 YP_128684.1 CDS PBPRA0451 NC_006370.1 470351 470983 D MutT/nudix family protein 470351..470983 Photobacterium profundum SS9 3122402 YP_128685.1 CDS PBPRA0452 NC_006370.1 471079 471507 D hypothetical protein 471079..471507 Photobacterium profundum SS9 3122058 YP_128686.1 CDS PBPRA0453 NC_006370.1 471539 472363 D cyclic 3',5'-adenosine monophosphate phosphodiesterase 471539..472363 Photobacterium profundum SS9 3124777 YP_128687.2 CDS PBPRA0454 NC_006370.1 472364 472942 D Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase 472364..472942 Photobacterium profundum SS9 3124768 YP_128688.1 CDS PBPRA0455 NC_006370.1 473063 474946 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 473063..474946 Photobacterium profundum SS9 3125343 YP_128689.1 CDS PBPRA0456 NC_006370.1 475084 477354 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 475084..477354 Photobacterium profundum SS9 3124829 YP_128690.2 CDS PBPRA0457 NC_006370.1 477500 478819 R catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase complement(477500..478819) Photobacterium profundum SS9 3124776 YP_128691.1 CDS PBPRA0458 NC_006370.1 479197 480540 D uncharacterized member of the GPH family of galactose-pentose-hexuronide transporters; symporter YagG 479197..480540 Photobacterium profundum SS9 3124744 YP_128692.1 CDS PBPRA0459 NC_006370.1 480635 481660 D hypothetical protein 480635..481660 Photobacterium profundum SS9 3122181 YP_128693.1 CDS PBPRA0460 NC_006370.1 481776 482879 D hypothetical protein 481776..482879 Photobacterium profundum SS9 3124775 YP_128694.1 CDS PBPRA0461 NC_006370.1 483054 485414 D xylosidase 483054..485414 Photobacterium profundum SS9 3124786 YP_128695.1 CDS xylF NC_006370.1 485799 486794 D periplasmic substrate-binding component of the ATP-dependent xylose transport system; high affinity; D-xylose transporter subunit XylF 485799..486794 Photobacterium profundum SS9 3124811 YP_128696.1 CDS PBPRA0463 NC_006370.1 486875 488398 D with XylFH is part of the high affinity xylose ABC transporter; xylose transporter ATP-binding subunit 486875..488398 Photobacterium profundum SS9 3121961 YP_128697.1 CDS PBPRA0464 NC_006370.1 488398 489573 D inner membrane permease of D-xyloseABC transporter 488398..489573 Photobacterium profundum SS9 3122962 YP_128698.1 CDS PBPRA0465 NC_006370.1 489699 490043 R hypothetical protein complement(489699..490043) Photobacterium profundum SS9 3124766 YP_128699.1 CDS PBPRA0466 NC_006370.1 490139 490855 R xylose operon regulatory protein complement(490139..490855) Photobacterium profundum SS9 3125190 YP_128700.1 CDS PBPRA0467 NC_006370.1 491096 492547 D xylulose kinase 491096..492547 Photobacterium profundum SS9 3122031 YP_128701.1 CDS PBPRA0468 NC_006370.1 492691 493416 D 1-acyl-sn-glycerol-3-phosphateacyltransferase 492691..493416 Photobacterium profundum SS9 3122005 YP_128702.1 CDS PBPRA0469 NC_006370.1 493585 494127 D isopentenyldiphosphate isomerase 493585..494127 Photobacterium profundum SS9 3122444 YP_128703.1 CDS PBPRA0470 NC_006370.1 494511 494897 R translation initiation inhibitor complement(494511..494897) Photobacterium profundum SS9 3122356 YP_128704.1 CDS PBPRA0471 NC_006370.1 495046 495540 R hypothetical protein complement(495046..495540) Photobacterium profundum SS9 3122102 YP_128705.1 CDS PBPRA0472 NC_006370.1 495698 496693 R hypothetical protein complement(495698..496693) Photobacterium profundum SS9 3122039 YP_128706.1 CDS PBPRA0473 NC_006370.1 496907 497410 R involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase complement(496907..497410) Photobacterium profundum SS9 3122654 YP_128707.1 CDS pyrB NC_006370.1 497388 498317 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase complement(497388..498317) Photobacterium profundum SS9 3124443 YP_128708.1 CDS PBPRA0475 NC_006370.1 498779 499789 R catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase complement(498779..499789) Photobacterium profundum SS9 3122547 YP_128709.1 CDS PBPRA0476 NC_006370.1 499913 500824 R reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase complement(499913..500824) Photobacterium profundum SS9 3122174 YP_128710.1 CDS PBPRA0477 NC_006370.1 500945 502165 R catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase complement(500945..502165) Photobacterium profundum SS9 3122045 YP_128711.1 CDS PBPRA0478 NC_006370.1 503339 504784 R hypothetical protein complement(503339..504784) Photobacterium profundum SS9 3122111 YP_128712.1 CDS PBPRA0479 NC_006370.1 505530 505937 D hypothetical protein 505530..505937 Photobacterium profundum SS9 3122093 YP_128713.1 CDS PBPRA0480 NC_006370.1 506166 508604 D beta-mannosidase precursor 506166..508604 Photobacterium profundum SS9 3124199 YP_128714.1 CDS PBPRA0481 NC_006370.1 508707 509648 R MarR family transcriptional regulator complement(508707..509648) Photobacterium profundum SS9 3122370 YP_128715.1 CDS PBPRA0482 NC_006370.1 509741 510340 R hypothetical protein complement(509741..510340) Photobacterium profundum SS9 3122464 YP_128716.1 CDS valS NC_006370.1 510398 513334 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(510398..513334) Photobacterium profundum SS9 3122410 YP_128717.1 CDS PBPRA0484 NC_006370.1 513791 515299 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(513791..515299) Photobacterium profundum SS9 3122668 YP_128718.1 CDS PBPRA0485 NC_006370.1 515495 516595 D permease 515495..516595 Photobacterium profundum SS9 3122631 YP_128719.1 CDS PBPRA0486 NC_006370.1 516595 517665 D permease 516595..517665 Photobacterium profundum SS9 3122872 YP_128720.1 CDS PBPRA0487 NC_006370.1 517814 518080 D hypothetical protein 517814..518080 Photobacterium profundum SS9 3122682 YP_128721.1 CDS PBPRA0488 NC_006370.1 518074 518865 D hypothetical protein 518074..518865 Photobacterium profundum SS9 3123140 YP_128722.1 CDS PBPRA0489 NC_006370.1 518870 519199 D Tn5 transposase 518870..519199 Photobacterium profundum SS9 3123079 YP_128723.1 CDS PBPRA0490 NC_006370.1 519246 519737 R hypothetical protein complement(519246..519737) Photobacterium profundum SS9 3125345 YP_128724.1 CDS PBPRA0492 NC_006370.1 520344 520601 R hypothetical protein complement(520344..520601) Photobacterium profundum SS9 3123165 YP_128725.1 CDS PBPRA0493 NC_006370.1 520969 521310 D hypothetical protein 520969..521310 Photobacterium profundum SS9 3125304 YP_128726.1 CDS PBPRA0494 NC_006370.1 521400 522707 R deacetylase DA1 complement(521400..522707) Photobacterium profundum SS9 3122536 YP_128727.1 CDS PBPRA0495 NC_006370.1 523124 523234 D phosphotransferase system cellobiose-specific component IIB 523124..523234 Photobacterium profundum SS9 3123461 YP_128728.1 CDS PBPRA0496 NC_006370.1 523486 524814 D phosphotransferase system cellobiose-specific component IIC 523486..524814 Photobacterium profundum SS9 3124192 YP_128729.1 CDS PBPRA0497 NC_006370.1 524884 526197 D 6-phospho-beta-glucosidase 524884..526197 Photobacterium profundum SS9 3123444 YP_128730.1 CDS PBPRA0498 NC_006370.1 526260 526997 D hypothetical protein 526260..526997 Photobacterium profundum SS9 3125470 YP_128731.1 CDS PBPRA0499 NC_006370.1 527273 528007 D LacI family transcriptional regulator 527273..528007 Photobacterium profundum SS9 3123604 YP_128732.1 CDS PBPRA0500 NC_006370.1 528031 528270 D hypothetical protein 528031..528270 Photobacterium profundum SS9 3122690 YP_128733.1 CDS PBPRA0501 NC_006370.1 528427 529089 D hypothetical protein 528427..529089 Photobacterium profundum SS9 3123180 YP_128734.1 CDS PBPRA0509 NC_006370.1 535412 535798 R hypothetical protein complement(535412..535798) Photobacterium profundum SS9 3123027 YP_128735.1 CDS PBPRA0510 NC_006370.1 536061 536558 R transposase complement(536061..536558) Photobacterium profundum SS9 3124747 YP_128736.1 CDS PBPRA0511 NC_006370.1 536703 537719 R transposase complement(536703..537719) Photobacterium profundum SS9 3124063 YP_128737.1 CDS PBPRA0512 NC_006370.1 537931 538494 R transposase complement(537931..538494) Photobacterium profundum SS9 3124113 YP_128738.1 CDS PBPRA0513 NC_006370.1 538496 538966 R transposase and inactivatedderivatives complement(538496..538966) Photobacterium profundum SS9 3124121 YP_128739.1 CDS PBPRA0514 NC_006370.1 539245 540525 D hypothetical protein 539245..540525 Photobacterium profundum SS9 3124246 YP_128740.1 CDS PBPRA0515 NC_006370.1 540867 541388 R transposase complement(540867..541388) Photobacterium profundum SS9 3124135 YP_128741.1 CDS PBPRA0516 NC_006370.1 541673 543085 R phosphoglucomutase/phosphomannomutase complement(541673..543085) Photobacterium profundum SS9 3124477 YP_128742.1 CDS PBPRA0517 NC_006370.1 543150 545555 R N,N-diacetylchitobiose phosphorylase complement(543150..545555) Photobacterium profundum SS9 3124685 YP_128743.1 CDS PBPRA0518 NC_006370.1 545595 547526 R N-acetyl-beta-hexosaminidase complement(545595..547526) Photobacterium profundum SS9 3124735 YP_128744.1 CDS PBPRA0519 NC_006370.1 547536 548423 R N-acetylglucosamine kinase complement(547536..548423) Photobacterium profundum SS9 3123215 YP_128745.1 CDS PBPRA0520 NC_006370.1 548416 550152 R endoglucanase-related protein complement(548416..550152) Photobacterium profundum SS9 3124327 YP_128746.1 CDS PBPRA0521 NC_006370.1 550194 551189 R ABC-type oligopeptide transport system, ATPase component complement(550194..551189) Photobacterium profundum SS9 3124335 YP_128747.1 CDS PBPRA0522 NC_006370.1 551218 552189 R peptide ABC transporter, ATP-binding protein complement(551218..552189) Photobacterium profundum SS9 3124581 YP_128748.1 CDS PBPRA0523 NC_006370.1 552189 553217 R peptide ABC transporter, permeaseprotein complement(552189..553217) Photobacterium profundum SS9 3124557 YP_128749.1 CDS PBPRA0524 NC_006370.1 553220 554206 R peptide ABC transporter, permease protein complement(553220..554206) Photobacterium profundum SS9 3125409 YP_128750.1 CDS PBPRA0525 NC_006370.1 554348 556027 R peptide ABC transporter, periplasmicpeptide-binding protein complement(554348..556027) Photobacterium profundum SS9 3124418 YP_128751.1 CDS PBPRA0526 NC_006370.1 556781 560176 R sensory box sensor histidine kinase/response regulator complement(556781..560176) Photobacterium profundum SS9 3124444 YP_128752.1 CDS PBPRA0527 NC_006370.1 560502 561521 R hypothetical protein complement(560502..561521) Photobacterium profundum SS9 3124238 YP_128753.1 CDS PBPRA0528 NC_006370.1 561645 562730 R permease complement(561645..562730) Photobacterium profundum SS9 3124338 YP_128754.1 CDS PBPRA0529 NC_006370.1 563052 564350 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(563052..564350) Photobacterium profundum SS9 3124012 YP_128755.1 CDS PBPRA0530 NC_006370.1 564591 565994 D Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation; chloride channel protein 564591..565994 Photobacterium profundum SS9 3124122 YP_128756.1 CDS PBPRA0531 NC_006370.1 566055 566396 D essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 566055..566396 Photobacterium profundum SS9 3123495 YP_128757.1 CDS PBPRA0532 NC_006370.1 566519 567844 R hypothetical protein complement(566519..567844) Photobacterium profundum SS9 3124011 YP_128758.1 CDS PBPRA0533 NC_006370.1 567971 569158 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 567971..569158 Photobacterium profundum SS9 3123720 YP_128759.1 CDS PBPRA0534 NC_006370.1 569282 569896 D DedA family protein 569282..569896 Photobacterium profundum SS9 3123991 YP_128760.1 CDS PBPRA0535 NC_006370.1 570064 570675 R hypothetical protein complement(570064..570675) Photobacterium profundum SS9 3123570 YP_128761.1 CDS PBPRA0536 NC_006370.1 570797 571621 R hypothetical protein complement(570797..571621) Photobacterium profundum SS9 3125228 YP_128762.1 CDS PBPRA0537 NC_006370.1 571622 572578 R catalyzes the formation of adenosylcobinamide-phosphate from adenosylcobyric acid; adenosylcobinamide-phosphate synthase complement(571622..572578) Photobacterium profundum SS9 3124289 YP_128763.1 CDS PBPRA0538 NC_006370.1 572578 573276 R enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(572578..573276) Photobacterium profundum SS9 3125411 YP_128764.1 CDS gltD NC_006370.1 573461 574873 R glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta complement(573461..574873) Photobacterium profundum SS9 3123141 YP_128765.1 CDS gltB NC_006370.1 574889 579394 R catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha complement(574889..579394) Photobacterium profundum SS9 3123448 YP_128766.1 CDS gltD NC_006370.1 579782 581254 R glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta complement(579782..581254) Photobacterium profundum SS9 3123466 YP_128767.1 CDS PBPRA0542 NC_006370.1 581247 585794 R glutamate synthase, large subunit complement(581247..585794) Photobacterium profundum SS9 3124939 YP_128768.1 CDS PBPRA0543 NC_006370.1 586442 587386 D Fe-S oxidoreductase 586442..587386 Photobacterium profundum SS9 3123329 YP_128769.1 CDS PBPRA0544 NC_006370.1 587505 589331 D sensory box/GGDEF family protein 587505..589331 Photobacterium profundum SS9 3123441 YP_128770.2 CDS PBPRA0545 NC_006370.1 589481 591877 D sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; aerobic respiration control sensor protein ArcB 589481..591877 Photobacterium profundum SS9 3123174 YP_128771.1 CDS PBPRA0546 NC_006370.1 592017 592451 D hypothetical protein 592017..592451 Photobacterium profundum SS9 3122968 YP_128772.1 CDS PBPRA0547 NC_006370.1 592581 593300 R two-component response regulator complement(592581..593300) Photobacterium profundum SS9 3123086 YP_128773.1 CDS PBPRA0548 NC_006370.1 593683 594096 D hypothetical protein 593683..594096 Photobacterium profundum SS9 3124945 YP_128774.1 CDS PBPRA0549 NC_006370.1 594171 594662 D regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 594171..594662 Photobacterium profundum SS9 3123170 YP_128775.1 CDS PBPRA0550 NC_006370.1 594763 595218 R hypothetical protein complement(594763..595218) Photobacterium profundum SS9 3122300 YP_128776.1 CDS aceK NC_006370.1 595386 597113 R catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein complement(595386..597113) Photobacterium profundum SS9 3122314 YP_128777.1 CDS thrA NC_006370.1 597569 600028 D multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homeserine dehydrogenase I 597569..600028 Photobacterium profundum SS9 3125244 YP_128778.1 CDS PBPRA0553 NC_006370.1 600031 600987 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 600031..600987 Photobacterium profundum SS9 3123577 YP_128779.1 CDS PBPRA0554 NC_006370.1 600990 602276 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 600990..602276 Photobacterium profundum SS9 3124220 YP_128780.1 CDS PBPRA0555 NC_006370.1 602342 603562 R sodium:dicarboxylate symporter complement(602342..603562) Photobacterium profundum SS9 3122574 YP_128781.2 CDS PBPRA0556 NC_006370.1 603832 604209 R stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA complement(603832..604209) Photobacterium profundum SS9 3122818 YP_128782.1 CDS PBPRA0557 NC_006370.1 604560 605399 D Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 604560..605399 Photobacterium profundum SS9 3125166 YP_128783.1 CDS PBPRA0558 NC_006370.1 605801 606484 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 605801..606484 Photobacterium profundum SS9 3122745 YP_128784.1 CDS PBPRA0559 NC_006370.1 606632 607165 D hypothetical protein 606632..607165 Photobacterium profundum SS9 3124398 YP_128785.1 CDS PBPRA0560 NC_006370.1 608355 609788 D sodium/alanine symporter 608355..609788 Photobacterium profundum SS9 3122649 YP_128786.1 CDS PBPRA0561 NC_006370.1 609894 610673 D hypothetical protein 609894..610673 Photobacterium profundum SS9 3123070 YP_128787.1 CDS PBPRA0562 NC_006370.1 610816 612075 R facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB complement(610816..612075) Photobacterium profundum SS9 3122503 YP_128788.1 CDS PBPRA0563 NC_006370.1 612270 613061 R O-methyltransferase complement(612270..613061) Photobacterium profundum SS9 3125390 YP_128789.1 CDS PBPRA0564 NC_006370.1 613454 614761 D branched chain amino acid transport system II carrier protein 613454..614761 Photobacterium profundum SS9 3122522 YP_128790.1 CDS PBPRA0565 NC_006370.1 614863 615384 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic; flavodoxin FldB complement(614863..615384) Photobacterium profundum SS9 3122566 YP_128791.1 CDS xerD NC_006370.1 615616 616494 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 615616..616494 Photobacterium profundum SS9 3121994 YP_128792.1 CDS PBPRA0567 NC_006370.1 616624 617346 D hypothetical protein 616624..617346 Photobacterium profundum SS9 3122397 YP_128793.2 CDS PBPRA0568 NC_006370.1 617519 619243 D 5'-3' single-stranded-DNA-specific exonuclease; ssDNA exonuclease RecJ 617519..619243 Photobacterium profundum SS9 3122457 YP_128794.1 CDS PBPRA0569 NC_006370.1 619486 620547 D peptide chain release factor 2 619486..620547 Photobacterium profundum SS9 3122268 YP_128795.1 CDS lysS NC_006370.1 620583 622091 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 620583..622091 Photobacterium profundum SS9 3124097 YP_128796.1 CDS PBPRA0571 NC_006370.1 622890 624164 D Sodium/glutamate symporter 622890..624164 Photobacterium profundum SS9 3125119 YP_128797.1 CDS PBPRA0572 NC_006370.1 624438 625895 D sigma-54 dependent transcriptional regulator 624438..625895 Photobacterium profundum SS9 3124737 YP_128798.1 CDS PBPRA0573 NC_006370.1 626376 626636 D hypothetical protein 626376..626636 Photobacterium profundum SS9 3125376 YP_128799.1 CDS PBPRA0574 NC_006370.1 626922 627956 R oxidoreductase complement(626922..627956) Photobacterium profundum SS9 3124301 YP_128800.1 CDS PBPRA0575 NC_006370.1 628131 628433 D hypothetical protein 628131..628433 Photobacterium profundum SS9 3125278 YP_128801.1 CDS PBPRA0576 NC_006370.1 628490 629158 R MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein complement(628490..629158) Photobacterium profundum SS9 3123929 YP_128802.1 CDS PBPRA0577 NC_006370.1 630067 630591 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 630067..630591 Photobacterium profundum SS9 3124851 YP_128803.1 CDS PBPRA0578 NC_006370.1 630635 632890 D member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr; fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain 630635..632890 Photobacterium profundum SS9 3125261 YP_128804.1 CDS PBPRA0579 NC_006370.1 632922 633725 D hypothetical protein 632922..633725 Photobacterium profundum SS9 3122641 YP_128805.1 CDS PBPRA0580 NC_006370.1 633812 634612 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 633812..634612 Photobacterium profundum SS9 3122895 YP_128806.1 CDS thyA NC_006370.1 634773 635624 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 634773..635624 Photobacterium profundum SS9 3124233 YP_128807.1 CDS PBPRA0582 NC_006370.1 635752 637062 R sodium-dependent phosphate pump NptA complement(635752..637062) Photobacterium profundum SS9 3124792 YP_128808.1 CDS nhaA NC_006370.1 637377 638534 D exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 637377..638534 Photobacterium profundum SS9 3124944 YP_128809.1 CDS PBPRA0584 NC_006370.1 638536 638805 D hypothetical protein 638536..638805 Photobacterium profundum SS9 3125446 YP_128810.1 CDS nhaR NC_006370.1 638899 639786 D Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 638899..639786 Photobacterium profundum SS9 3124835 YP_128811.1 CDS PBPRA0586 NC_006370.1 639883 640176 D transcription activator HlyU 639883..640176 Photobacterium profundum SS9 3125415 YP_128812.1 CDS PBPRA0587 NC_006370.1 640286 640579 R ribosomal protein S20 complement(640286..640579) Photobacterium profundum SS9 3125393 YP_128813.1 CDS PBPRA0588 NC_006370.1 640631 641662 D MviN protein 640631..641662 Photobacterium profundum SS9 3122401 YP_128814.1 CDS PBPRA0589 NC_006370.1 641716 642312 D hypothetical protein 641716..642312 Photobacterium profundum SS9 3124840 YP_128815.2 CDS PBPRA0590 NC_006370.1 642376 643347 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 642376..643347 Photobacterium profundum SS9 3125357 YP_128816.1 CDS ileS NC_006370.1 643344 646208 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 643344..646208 Photobacterium profundum SS9 3125510 YP_128817.1 CDS lspA NC_006370.1 646268 646732 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 646268..646732 Photobacterium profundum SS9 3124589 YP_128818.1 CDS PBPRA0593 NC_006370.1 646919 647353 D peptidyl-prolyl cis-trans isomerase, FKBP-type 646919..647353 Photobacterium profundum SS9 3124401 YP_128819.1 CDS ispH NC_006370.1 647366 648307 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 647366..648307 Photobacterium profundum SS9 3123666 YP_128820.2 CDS PBPRA0595 NC_006370.1 648431 649240 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 648431..649240 Photobacterium profundum SS9 3123249 YP_128821.1 CDS PBPRA0596 NC_006370.1 649764 650918 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 649764..650918 Photobacterium profundum SS9 3125111 YP_128822.1 CDS carB NC_006370.1 650935 654168 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 650935..654168 Photobacterium profundum SS9 3124711 YP_128823.1 CDS PBPRA0598 NC_006370.1 654638 655546 D hypothetical protein 654638..655546 Photobacterium profundum SS9 3122942 YP_128824.1 CDS PBPRA0599 NC_006370.1 655647 657065 R penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase/endopeptidase complement(655647..657065) Photobacterium profundum SS9 3122062 YP_128825.1 CDS PBPRA0600 NC_006370.1 657179 658204 R ompL_phopr porin-like protein L precursor complement(657179..658204) Photobacterium profundum SS9 3124270 YP_128826.1 CDS greA NC_006370.1 658663 659163 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 658663..659163 Photobacterium profundum SS9 3124381 YP_128827.1 CDS PBPRA0602 NC_006370.1 659301 659633 R RNA-binding protein complement(659301..659633) Photobacterium profundum SS9 3124511 YP_128828.1 CDS rrmJ NC_006370.1 659737 660366 D Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase 659737..660366 Photobacterium profundum SS9 3123905 YP_128829.1 CDS PBPRA0604 NC_006370.1 660341 662431 D cell division protein FtsH 660341..662431 Photobacterium profundum SS9 3122821 YP_128830.1 CDS PBPRA0605 NC_006370.1 662539 663336 D dihydropteroate synthase 662539..663336 Photobacterium profundum SS9 3122301 YP_128831.1 CDS PBPRA0606 NC_006370.1 663661 664764 D phosphoglucomutase/phosphomannomutasefamily protein MrsA 663661..664764 Photobacterium profundum SS9 3122749 YP_128832.1 CDS PBPRA0607 NC_006370.1 664992 665327 D protein export-membrane protein 664992..665327 Photobacterium profundum SS9 3122752 YP_128833.1 CDS PBPRA0610 NC_006370.1 665737 666192 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 665737..666192 Photobacterium profundum SS9 3123770 YP_128834.1 CDS nusA NC_006370.1 666215 667702 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 666215..667702 Photobacterium profundum SS9 3124298 YP_128835.1 CDS infB NC_006370.1 667730 670429 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 667730..670429 Photobacterium profundum SS9 3125047 YP_128836.1 CDS PBPRA0613 NC_006370.1 670653 670958 D ribosome-binding factor A 670653..670958 Photobacterium profundum SS9 3122802 YP_128837.1 CDS truB NC_006370.1 670958 671908 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 670958..671908 Photobacterium profundum SS9 3125036 YP_128838.1 CDS rpsO NC_006370.1 672077 672346 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 672077..672346 Photobacterium profundum SS9 3124149 YP_128839.1 CDS PBPRA0616 NC_006370.1 672632 674755 D polynucleotide phosphorylase 672632..674755 Photobacterium profundum SS9 3122127 YP_128840.1 CDS PBPRA0617 NC_006370.1 674837 675730 D lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 674837..675730 Photobacterium profundum SS9 3124863 YP_128841.1 CDS PBPRA0618 NC_006370.1 675838 676734 R protease complement(675838..676734) Photobacterium profundum SS9 3122855 YP_128842.1 CDS PBPRA0619 NC_006370.1 676725 677732 R protease complement(676725..677732) Photobacterium profundum SS9 3122766 YP_128843.1 CDS PBPRA0620 NC_006370.1 677875 679914 R c-di-GMP phosphodiesterase A-related protein complement(677875..679914) Photobacterium profundum SS9 3124125 YP_128844.1 CDS PBPRA0621 NC_006370.1 680179 680700 D lipid carrier protein 680179..680700 Photobacterium profundum SS9 3124281 YP_128845.1 CDS PBPRA0622 NC_006370.1 680690 681193 D acetyltransferase 680690..681193 Photobacterium profundum SS9 3122506 YP_128846.1 CDS PBPRA0623 NC_006370.1 681363 681764 D DNA polymerase III, psi subunit 681363..681764 Photobacterium profundum SS9 3123279 YP_128847.1 CDS PBPRA0624 NC_006370.1 681754 682200 D ribosomal-protein-alanine acetyltransferase 681754..682200 Photobacterium profundum SS9 3125338 YP_128848.1 CDS PBPRA0625 NC_006370.1 682420 683397 D peptide chain release factor RF-3 682420..683397 Photobacterium profundum SS9 3123561 YP_128849.1 CDS PBPRA0626 NC_006370.1 683400 683999 D hypothetical protein 683400..683999 Photobacterium profundum SS9 3123778 YP_128850.1 CDS PBPRA0627 NC_006370.1 684177 686297 D glycogen operon protein 684177..686297 Photobacterium profundum SS9 3123638 YP_128851.1 CDS PBPRA0628 NC_006370.1 686412 687320 D hypothetical protein 686412..687320 Photobacterium profundum SS9 3123381 YP_128852.1 CDS PBPRA0629 NC_006370.1 687541 688794 D NupC family protein 687541..688794 Photobacterium profundum SS9 3123473 YP_128853.1 CDS PBPRA0630 NC_006370.1 689607 690380 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 689607..690380 Photobacterium profundum SS9 3123609 YP_128854.2 CDS deoA NC_006370.1 690582 691913 D Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 690582..691913 Photobacterium profundum SS9 3124140 YP_128855.1 CDS PBPRA0632 NC_006370.1 691924 693144 D catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 691924..693144 Photobacterium profundum SS9 3124935 YP_128856.1 CDS deoD NC_006370.1 693282 694007 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 693282..694007 Photobacterium profundum SS9 3124092 YP_128857.1 CDS PBPRA0634 NC_006370.1 694082 694702 R SerB-cotransposed membrane protein precursor complement(694082..694702) Photobacterium profundum SS9 3123872 YP_128858.1 CDS serB NC_006370.1 694966 695937 D catalyzes the formation of serine from O-phosphoserine; phosphoserine phosphatase 694966..695937 Photobacterium profundum SS9 3122182 YP_128859.1 CDS PBPRA0636 NC_006370.1 696112 698463 R hypothetical protein complement(696112..698463) Photobacterium profundum SS9 3125087 YP_128860.1 CDS PBPRA0637 NC_006370.1 698610 699989 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 698610..699989 Photobacterium profundum SS9 3125156 YP_128861.1 CDS PBPRA0638 NC_006370.1 700197 701189 R ToxR-activated protein TagE complement(700197..701189) Photobacterium profundum SS9 3123996 YP_128862.1 CDS PBPRA0639 NC_006370.1 701206 701586 R hypothetical protein complement(701206..701586) Photobacterium profundum SS9 3124521 YP_128863.1 CDS PBPRA0640 NC_006370.1 701867 703534 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein complement(701867..703534) Photobacterium profundum SS9 3122618 YP_128864.1 CDS PBPRA0641 NC_006370.1 703667 705601 D soluble lytic murein transglycosylase 703667..705601 Photobacterium profundum SS9 3123058 YP_128865.1 CDS PBPRA0642 NC_006370.1 705722 706033 D When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 705722..706033 Photobacterium profundum SS9 3123186 YP_128866.1 CDS PBPRA0643 NC_006370.1 706146 706670 R pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase complement(706146..706670) Photobacterium profundum SS9 3122899 YP_128867.1 CDS PBPRA0644 NC_006370.1 707122 707814 R transcriptional regulator complement(707122..707814) Photobacterium profundum SS9 3123418 YP_128868.1 CDS PBPRA0645 NC_006370.1 708540 709352 R response regulator complement(708540..709352) Photobacterium profundum SS9 3123785 YP_128869.1 CDS PBPRA0646 NC_006370.1 709410 710447 R hypothetical protein complement(709410..710447) Photobacterium profundum SS9 3125197 YP_128870.1 CDS PBPRA0647 NC_006370.1 710447 711805 R hypothetical protein complement(710447..711805) Photobacterium profundum SS9 3122385 YP_128871.1 CDS PBPRA0648 NC_006370.1 711865 712689 R hypothetical protein complement(711865..712689) Photobacterium profundum SS9 3125520 YP_128872.1 CDS PBPRA0649 NC_006370.1 712682 714016 R hypothetical protein complement(712682..714016) Photobacterium profundum SS9 3122449 YP_128873.1 CDS PBPRA0650 NC_006370.1 714004 714702 R ABC transporter ATP-binding protein complement(714004..714702) Photobacterium profundum SS9 3122255 YP_128874.1 CDS PBPRA0651 NC_006370.1 714789 715487 R hypothetical protein complement(714789..715487) Photobacterium profundum SS9 3124041 YP_128875.1 CDS PBPRA0652 NC_006370.1 715750 716688 D hypothetical protein 715750..716688 Photobacterium profundum SS9 3122868 YP_128876.1 CDS PBPRA0653 NC_006370.1 716760 717380 R hypothetical protein complement(716760..717380) Photobacterium profundum SS9 3122683 YP_128877.1 CDS PBPRA0654 NC_006370.1 717589 718539 D hypothetical protein 717589..718539 Photobacterium profundum SS9 3122979 YP_128878.1 CDS PBPRA0655 NC_006370.1 718443 718889 D hypothetical protein 718443..718889 Photobacterium profundum SS9 3124137 YP_128879.1 CDS PBPRA0656 NC_006370.1 719070 719549 D hypothetical protein 719070..719549 Photobacterium profundum SS9 3124699 YP_128880.1 CDS PBPRA0657 NC_006370.1 719613 721811 R serine/threonine protein kinase complement(719613..721811) Photobacterium profundum SS9 3124843 YP_128881.1 CDS PBPRA0658 NC_006370.1 721945 723255 D hypothetical protein 721945..723255 Photobacterium profundum SS9 3125302 YP_128882.1 CDS PBPRA0659 NC_006370.1 723258 723725 D hypothetical protein 723258..723725 Photobacterium profundum SS9 3122006 YP_128883.1 CDS PBPRA0660 NC_006370.1 723881 725206 D hypothetical protein 723881..725206 Photobacterium profundum SS9 3122246 YP_128884.1 CDS PBPRA0661 NC_006370.1 725233 726552 D hypothetical protein 725233..726552 Photobacterium profundum SS9 3124000 YP_128885.1 CDS PBPRA0662 NC_006370.1 726552 730097 D hypothetical protein 726552..730097 Photobacterium profundum SS9 3124645 YP_128886.1 CDS PBPRA0663 NC_006370.1 730052 730765 D hypothetical protein 730052..730765 Photobacterium profundum SS9 3125452 YP_128887.1 CDS PBPRA0664 NC_006370.1 730681 731589 D serine/threonine protein phosphatase 730681..731589 Photobacterium profundum SS9 3123244 YP_128888.1 CDS PBPRA0665 NC_006370.1 731589 732722 D hypothetical protein 731589..732722 Photobacterium profundum SS9 3124160 YP_128889.1 CDS PBPRA0666 NC_006370.1 732758 733291 D hypothetical protein 732758..733291 Photobacterium profundum SS9 3123035 YP_128890.1 CDS PBPRA0667 NC_006370.1 733291 734781 D hypothetical protein 733291..734781 Photobacterium profundum SS9 3122912 YP_128891.1 CDS PBPRA0668 NC_006370.1 734842 736383 D hypothetical protein 734842..736383 Photobacterium profundum SS9 3122751 YP_128892.1 CDS PBPRA0669 NC_006370.1 736388 737182 D hypothetical protein 736388..737182 Photobacterium profundum SS9 3123067 YP_128893.1 CDS PBPRA0670 NC_006370.1 737337 737672 D hypothetical protein 737337..737672 Photobacterium profundum SS9 3124661 YP_128894.1 CDS PBPRA0671 NC_006370.1 737674 739503 D hypothetical protein 737674..739503 Photobacterium profundum SS9 3122422 YP_128895.1 CDS PBPRA0672 NC_006370.1 739467 740471 D hypothetical protein 739467..740471 Photobacterium profundum SS9 3123326 YP_128896.1 CDS PBPRA0673 NC_006370.1 740336 743080 D ATPase with chaperone activity 740336..743080 Photobacterium profundum SS9 3122992 YP_128897.1 CDS PBPRA0674 NC_006370.1 743312 743791 D hypothetical protein 743312..743791 Photobacterium profundum SS9 3122114 YP_128898.1 CDS PBPRA0675 NC_006370.1 743850 745700 D hypothetical protein 743850..745700 Photobacterium profundum SS9 3123049 YP_128899.1 CDS PBPRA0676 NC_006370.1 745739 746029 D hypothetical protein 745739..746029 Photobacterium profundum SS9 3123064 YP_128900.1 CDS PBPRA0677 NC_006370.1 746042 747007 D hypothetical protein 746042..747007 Photobacterium profundum SS9 3125128 YP_128901.1 CDS PBPRA0678 NC_006370.1 746998 751056 D nucleotidyltransferase 746998..751056 Photobacterium profundum SS9 3122309 YP_128902.1 CDS PBPRA0679 NC_006370.1 751084 751689 D hypothetical protein 751084..751689 Photobacterium profundum SS9 3122417 YP_128903.1 CDS PBPRA0680 NC_006370.1 751807 753405 D hypothetical protein 751807..753405 Photobacterium profundum SS9 3124171 YP_128904.1 CDS PBPRA0681 NC_006370.1 753398 753751 D hypothetical protein 753398..753751 Photobacterium profundum SS9 3122090 YP_128905.1 CDS PBPRA0682 NC_006370.1 754269 754553 D hypothetical protein 754269..754553 Photobacterium profundum SS9 3123866 YP_128906.1 CDS PBPRA0683 NC_006370.1 754813 755766 D hypothetical protein 754813..755766 Photobacterium profundum SS9 3124434 YP_128907.1 CDS PBPRA0684 NC_006370.1 755772 756992 D hypothetical protein 755772..756992 Photobacterium profundum SS9 3125506 YP_128908.1 CDS PBPRA0685 NC_006370.1 757277 759340 D hypothetical protein 757277..759340 Photobacterium profundum SS9 3123306 YP_128909.1 CDS PBPRA0686 NC_006370.1 759400 761112 D hypothetical protein 759400..761112 Photobacterium profundum SS9 3124870 YP_128910.1 CDS PBPRA0687 NC_006370.1 761245 763095 D hypothetical protein 761245..763095 Photobacterium profundum SS9 3122694 YP_128911.1 CDS PBPRA0688 NC_006370.1 763173 764453 D transposase of Tn5 763173..764453 Photobacterium profundum SS9 3125463 YP_128912.1 CDS PBPRA0689 NC_006370.1 764555 765991 D hypothetical protein 764555..765991 Photobacterium profundum SS9 3123378 YP_128913.1 CDS smpB NC_006370.1 766645 767121 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(766645..767121) Photobacterium profundum SS9 3123318 YP_128914.1 CDS PBPRA0691 NC_006370.1 767354 767788 D hypothetical protein 767354..767788 Photobacterium profundum SS9 3123222 YP_128915.1 CDS PBPRA0692 NC_006370.1 767778 768104 D hypothetical protein 767778..768104 Photobacterium profundum SS9 3123426 YP_128916.1 CDS PBPRA0693 NC_006370.1 768186 768542 R hypothetical protein complement(768186..768542) Photobacterium profundum SS9 3123838 YP_128917.1 CDS PBPRA0694 NC_006370.1 768745 770412 R recombination and repair protein complement(768745..770412) Photobacterium profundum SS9 3122366 YP_128918.1 CDS ppnK NC_006370.1 770592 771473 R catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase complement(770592..771473) Photobacterium profundum SS9 3123353 YP_128919.1 CDS PBPRA0696 NC_006370.1 771687 772307 D heat shock protein GrpE 771687..772307 Photobacterium profundum SS9 3124190 YP_128920.1 CDS dnaK NC_006370.1 772514 774433 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 772514..774433 Photobacterium profundum SS9 3123539 YP_128921.1 CDS PBPRA0698 NC_006370.1 774522 775664 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ 774522..775664 Photobacterium profundum SS9 3124921 YP_128922.1 CDS PBPRA0699 NC_006370.1 775743 776123 R fimbrial assembly protein PilE complement(775743..776123) Photobacterium profundum SS9 3123565 YP_128923.1 CDS PBPRA0700 NC_006370.1 776216 776845 D type IV pilin 776216..776845 Photobacterium profundum SS9 3124639 YP_128924.1 CDS PBPRA0701 NC_006370.1 776802 777458 D hypothetical protein 776802..777458 Photobacterium profundum SS9 3122287 YP_128925.1 CDS PBPRA0702 NC_006370.1 777458 778753 D hypothetical protein 777458..778753 Photobacterium profundum SS9 3123982 YP_128926.1 CDS PBPRA0703 NC_006370.1 778779 779147 D type IV pilin 778779..779147 Photobacterium profundum SS9 3123293 YP_128927.1 CDS PBPRA0712 NC_006370.1 786125 786688 R transposase complement(786125..786688) Photobacterium profundum SS9 3124341 YP_128928.1 CDS PBPRA0713 NC_006370.1 786690 787160 R transposase and inactivatedderivatives complement(786690..787160) Photobacterium profundum SS9 3124657 YP_128929.1 CDS PBPRA0714 NC_006370.1 787608 788588 D SorC family transcriptional regulator 787608..788588 Photobacterium profundum SS9 3123594 YP_128930.1 CDS mepA NC_006370.1 788715 789551 D D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase 788715..789551 Photobacterium profundum SS9 3124312 YP_128931.1 CDS PBPRA0716 NC_006370.1 789602 789856 R ferredoxin complement(789602..789856) Photobacterium profundum SS9 3123628 YP_128932.1 CDS PBPRA0717 NC_006370.1 789861 791267 R protease complement(789861..791267) Photobacterium profundum SS9 3125502 YP_128933.2 CDS rdgC NC_006370.1 791491 792405 R Required for efficient pilin antigenic variation; recombination associated protein complement(791491..792405) Photobacterium profundum SS9 3125237 YP_128934.1 CDS PBPRA0719 NC_006370.1 792542 793825 D exonuclease SbcD 792542..793825 Photobacterium profundum SS9 3122087 YP_128935.1 CDS PBPRA0720 NC_006370.1 793825 797595 D hypothetical protein 793825..797595 Photobacterium profundum SS9 3122303 YP_128936.1 CDS PBPRA0721 NC_006370.1 797762 798451 D DNA-binding response regulator PhoB 797762..798451 Photobacterium profundum SS9 3125270 YP_128937.1 CDS phoR NC_006370.1 798638 799942 D membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; phosphate regulon sensor protein 798638..799942 Photobacterium profundum SS9 3124902 YP_128938.1 CDS PBPRA0723 NC_006370.1 800036 800998 D phosphate-binding protein 800036..800998 Photobacterium profundum SS9 3123798 YP_128939.1 CDS PBPRA0724 NC_006370.1 801105 802292 R exopolyphosphatase complement(801105..802292) Photobacterium profundum SS9 3125225 YP_128940.1 CDS PBPRA0725 NC_006370.1 802445 802612 R hypothetical protein complement(802445..802612) Photobacterium profundum SS9 3124382 YP_128941.1 CDS PBPRA0726 NC_006370.1 802599 804701 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(802599..804701) Photobacterium profundum SS9 3123870 YP_128942.1 CDS PBPRA0727 NC_006370.1 804822 805334 R hypothetical protein complement(804822..805334) Photobacterium profundum SS9 3125321 YP_128943.1 CDS PBPRA0728 NC_006370.1 805706 807949 D phosphate ABC transporter permease 805706..807949 Photobacterium profundum SS9 3125257 YP_128944.1 CDS PBPRA0729 NC_006370.1 808049 809710 D phosphate ABC transporter, permease protein 808049..809710 Photobacterium profundum SS9 3123575 YP_128945.1 CDS PBPRA0730 NC_006370.1 809737 810555 D ABC-type phosphate transport system,ATPase component 809737..810555 Photobacterium profundum SS9 3123436 YP_128946.1 CDS PBPRA0731 NC_006370.1 810567 811277 D regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU 810567..811277 Photobacterium profundum SS9 3123209 YP_128947.1 CDS PBPRA0732 NC_006370.1 811582 812382 R hypothetical protein complement(811582..812382) Photobacterium profundum SS9 3123576 YP_128948.1 CDS PBPRA0733 NC_006370.1 812675 813481 D hypothetical protein 812675..813481 Photobacterium profundum SS9 3125120 YP_128949.1 CDS PBPRA0734 NC_006370.1 813549 814286 R copper homeostasis protein complement(813549..814286) Photobacterium profundum SS9 3125083 YP_128950.1 CDS PBPRA0735 NC_006370.1 814563 815180 R Ahp/CTSA family anti-oxidant protein complement(814563..815180) Photobacterium profundum SS9 3125405 YP_128951.1 CDS PBPRA0736 NC_006370.1 815298 816194 D LysR family transcriptional regulator 815298..816194 Photobacterium profundum SS9 3125266 YP_128952.1 CDS PBPRA0737 NC_006370.1 816794 818407 D Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 816794..818407 Photobacterium profundum SS9 3123546 YP_128953.1 CDS PBPRA0738 NC_006370.1 818530 819834 D Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase 818530..819834 Photobacterium profundum SS9 3123092 YP_128954.1 CDS PBPRA0739 NC_006370.1 819914 820501 R hypothetical protein complement(819914..820501) Photobacterium profundum SS9 3123020 YP_128955.1 CDS PBPRA0740 NC_006370.1 820517 820972 R acetoin utilization protein AcuB complement(820517..820972) Photobacterium profundum SS9 3125507 YP_128956.1 CDS PBPRA0741 NC_006370.1 821286 822374 D trypsin-like serine protease 821286..822374 Photobacterium profundum SS9 3125513 YP_128957.1 CDS queA NC_006370.1 822468 823571 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase 822468..823571 Photobacterium profundum SS9 3125127 YP_128958.1 CDS tgt NC_006370.1 823858 824985 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 823858..824985 Photobacterium profundum SS9 3124971 YP_128959.1 CDS yajC NC_006370.1 825010 825345 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 825010..825345 Photobacterium profundum SS9 3122998 YP_128960.1 CDS secD NC_006370.1 825371 827224 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 825371..827224 Photobacterium profundum SS9 3124929 YP_128961.1 CDS secF NC_006370.1 827236 828183 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 827236..828183 Photobacterium profundum SS9 3122887 YP_128962.1 CDS PBPRA0747 NC_006370.1 828477 829277 R inositol monophosphate family protein complement(828477..829277) Photobacterium profundum SS9 3122539 YP_128963.1 CDS PBPRA0748 NC_006370.1 829487 830218 D TrmH family RNA methyltransferase 829487..830218 Photobacterium profundum SS9 3122658 YP_128964.1 CDS PBPRA0749 NC_006370.1 830331 830849 D transcriptional regulator 830331..830849 Photobacterium profundum SS9 3122791 YP_128965.1 CDS PBPRA0750 NC_006370.1 830881 832095 D catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 830881..832095 Photobacterium profundum SS9 3122753 YP_128966.1 CDS PBPRA0751 NC_006370.1 832142 832528 D scaffold protein 832142..832528 Photobacterium profundum SS9 3124392 YP_128967.1 CDS PBPRA0752 NC_006370.1 832547 832870 D hesB family protein 832547..832870 Photobacterium profundum SS9 3123053 YP_128968.1 CDS hscB NC_006370.1 832956 833471 D J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 832956..833471 Photobacterium profundum SS9 3124664 YP_128969.1 CDS hscA NC_006370.1 833510 835363 D involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 833510..835363 Photobacterium profundum SS9 3123751 YP_128970.1 CDS PBPRA0755 NC_006370.1 835366 835704 D ferredoxin 835366..835704 Photobacterium profundum SS9 3124394 YP_128971.1 CDS PBPRA0756 NC_006370.1 835804 836004 D hypothetical protein 835804..836004 Photobacterium profundum SS9 3123792 YP_128972.1 CDS PBPRA0757 NC_006370.1 836331 837617 D catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase 836331..837617 Photobacterium profundum SS9 3124411 YP_128973.1 CDS PBPRA0758 NC_006370.1 837733 839010 D catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase 837733..839010 Photobacterium profundum SS9 3123374 YP_128974.1 CDS ndk NC_006370.1 839155 839583 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 839155..839583 Photobacterium profundum SS9 3123280 YP_128975.1 CDS PBPRA0760 NC_006370.1 839836 840957 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 839836..840957 Photobacterium profundum SS9 3123477 YP_128976.1 CDS PBPRA0761 NC_006370.1 841023 841751 D fimbrial biogenesis and twitching motility protein 841023..841751 Photobacterium profundum SS9 3123464 YP_128977.1 CDS PBPRA0762 NC_006370.1 841798 842733 D DNA-binding protein 841798..842733 Photobacterium profundum SS9 3123336 YP_128978.1 CDS ispG NC_006370.1 842746 843867 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 842746..843867 Photobacterium profundum SS9 3123695 YP_128979.1 CDS hisS NC_006370.1 843963 845231 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 843963..845231 Photobacterium profundum SS9 3123188 YP_128980.1 CDS PBPRA0765 NC_006370.1 845245 845856 D hypothetical protein 845245..845856 Photobacterium profundum SS9 3123292 YP_128981.1 CDS PBPRA0766 NC_006370.1 845868 847025 D with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 845868..847025 Photobacterium profundum SS9 3123909 YP_128982.1 CDS engA NC_006370.1 847204 848685 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 847204..848685 Photobacterium profundum SS9 3123771 YP_128983.1 CDS PBPRA0768 NC_006370.1 848955 849830 D metal-dependent hydrolase 848955..849830 Photobacterium profundum SS9 3123614 YP_128984.1 CDS PBPRA0769 NC_006370.1 849831 850082 R hypothetical protein complement(849831..850082) Photobacterium profundum SS9 3123610 YP_128985.1 CDS PBPRA0770 NC_006370.1 850155 850403 R hypothetical protein complement(850155..850403) Photobacterium profundum SS9 3124217 YP_128986.1 CDS PBPRA0771 NC_006370.1 850601 851779 D methyl-accepting chemotaxis protein 850601..851779 Photobacterium profundum SS9 3123219 YP_128987.1 CDS PBPRA0772 NC_006370.1 851795 852163 D chemotaxis protein CheY 851795..852163 Photobacterium profundum SS9 3124120 YP_128988.1 CDS PBPRA0773 NC_006370.1 852178 852489 D hypothetical protein 852178..852489 Photobacterium profundum SS9 3124451 YP_128989.1 CDS PBPRA0774 NC_006370.1 852553 854793 D chemotaxis histidine protein kinase CheA 852553..854793 Photobacterium profundum SS9 3122431 YP_128990.1 CDS PBPRA0775 NC_006370.1 854840 855337 R hypothetical protein complement(854840..855337) Photobacterium profundum SS9 3123168 YP_128991.1 CDS PBPRA0776 NC_006370.1 855531 858326 D hypothetical protein 855531..858326 Photobacterium profundum SS9 3124336 YP_128992.1 CDS PBPRA0777 NC_006370.1 858444 859355 D chemotaxis protein methyltransferase 858444..859355 Photobacterium profundum SS9 3124275 YP_128993.2 CDS PBPRA0778 NC_006370.1 859426 860502 D regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 859426..860502 Photobacterium profundum SS9 3122515 YP_128994.1 CDS xseA NC_006370.1 861331 862677 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(861331..862677) Photobacterium profundum SS9 3123283 YP_128995.1 CDS PBPRA0780 NC_006370.1 862936 864399 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 862936..864399 Photobacterium profundum SS9 3122478 YP_128996.1 CDS guaA NC_006370.1 864532 866115 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 864532..866115 Photobacterium profundum SS9 3123698 YP_128997.1 CDS PBPRA0782 NC_006370.1 866566 868125 D p-aminobenzoyl-glutamatetransporter 866566..868125 Photobacterium profundum SS9 3123429 YP_128998.1 CDS PBPRA0783 NC_006370.1 868235 869077 R esterase complement(868235..869077) Photobacterium profundum SS9 3124877 YP_128999.1 CDS PBPRA0784 NC_006370.1 869183 870313 R alcohol dehydrogenase class III complement(869183..870313) Photobacterium profundum SS9 3125216 YP_129000.1 CDS PBPRA0785 NC_006370.1 870306 870548 R hypothetical protein complement(870306..870548) Photobacterium profundum SS9 3123129 YP_129001.1 CDS PBPRA0786 NC_006370.1 870681 871196 D cytosine/adenosine deaminase 870681..871196 Photobacterium profundum SS9 3123784 YP_129002.1 CDS PBPRA0787 NC_006370.1 871693 873237 R YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; transglycosylase complement(871693..873237) Photobacterium profundum SS9 3122277 YP_129003.1 CDS PBPRA0788 NC_006370.1 873584 877552 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 873584..877552 Photobacterium profundum SS9 3122744 YP_129004.1 CDS PBPRA0789 NC_006370.1 877957 878265 R transposase complement(877957..878265) Photobacterium profundum SS9 3122856 YP_129005.1 CDS PBPRA0790 NC_006370.1 878336 878770 R transposase complement(878336..878770) Photobacterium profundum SS9 3122355 YP_129006.1 CDS PBPRA0791 NC_006370.1 878835 879344 R hypothetical protein complement(878835..879344) Photobacterium profundum SS9 3122221 YP_129007.1 CDS PBPRA0792 NC_006370.1 879761 880174 D hypothetical protein 879761..880174 Photobacterium profundum SS9 3122069 YP_129008.1 CDS PBPRA0793 NC_006370.1 880544 880882 D nitrogen regulatory protein P-II 880544..880882 Photobacterium profundum SS9 3123485 YP_129009.1 CDS PBPRA0794 NC_006370.1 880980 881597 R hypothetical protein complement(880980..881597) Photobacterium profundum SS9 3123731 YP_129010.1 CDS glyA NC_006370.1 881996 883246 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 881996..883246 Photobacterium profundum SS9 3123727 YP_129011.1 CDS nrdR NC_006370.1 883456 883905 D transcriptional regulator NrdR 883456..883905 Photobacterium profundum SS9 3124102 YP_129012.1 CDS PBPRA0797 NC_006370.1 883985 885100 D pyrimidine deaminase/pyrimidine reductase 883985..885100 Photobacterium profundum SS9 3123642 YP_129013.1 CDS PBPRA0798 NC_006370.1 885129 885785 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 885129..885785 Photobacterium profundum SS9 3122987 YP_129014.1 CDS PBPRA0799 NC_006370.1 885807 886910 D 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II 885807..886910 Photobacterium profundum SS9 3123687 YP_129015.1 CDS ribH NC_006370.1 887105 887575 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 887105..887575 Photobacterium profundum SS9 3124886 YP_129016.1 CDS nusB NC_006370.1 887587 888042 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 887587..888042 Photobacterium profundum SS9 3122016 YP_129017.1 CDS PBPRA0802 NC_006370.1 888137 889111 D catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 888137..889111 Photobacterium profundum SS9 3122656 YP_129018.1 CDS PBPRA0803 NC_006370.1 889115 889600 D hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate; phosphatidylglycerophosphatase A 889115..889600 Photobacterium profundum SS9 3122533 YP_129019.1 CDS PBPRA0804 NC_006370.1 889765 891840 D hypothetical protein 889765..891840 Photobacterium profundum SS9 3123132 YP_129020.1 CDS PBPRA0805 NC_006370.1 891999 893861 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(891999..893861) Photobacterium profundum SS9 3125521 YP_129021.1 CDS PBPRA0806 NC_006370.1 893886 894788 R geranyltranstransferase complement(893886..894788) Photobacterium profundum SS9 3122121 YP_129022.1 CDS PBPRA0807 NC_006370.1 894781 895023 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(894781..895023) Photobacterium profundum SS9 3125145 YP_129023.1 CDS PBPRA0808 NC_006370.1 895240 896001 D Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.; flagellar motor protein PomA 895240..896001 Photobacterium profundum SS9 3123289 YP_129024.1 CDS motB NC_006370.1 896010 896942 D with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar motor protein MotB 896010..896942 Photobacterium profundum SS9 3122869 YP_129025.1 CDS PBPRA0810 NC_006370.1 897147 898595 D Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 897147..898595 Photobacterium profundum SS9 3124228 YP_129026.1 CDS PBPRA0811 NC_006370.1 898675 899295 R 4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme complement(898675..899295) Photobacterium profundum SS9 3122958 YP_129027.1 CDS PBPRA0812 NC_006370.1 899285 900250 R ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase complement(899285..900250) Photobacterium profundum SS9 3123942 YP_129028.1 CDS PBPRA0813 NC_006370.1 900697 901515 R outer membrane protein ompK precursor complement(900697..901515) Photobacterium profundum SS9 3122152 YP_129029.1 CDS PBPRA0814 NC_006370.1 901890 902765 R outer membrane protein OmpK complement(901890..902765) Photobacterium profundum SS9 3124368 YP_129030.1 CDS PBPRA0815 NC_006370.1 903125 904513 R ampG protein complement(903125..904513) Photobacterium profundum SS9 3122905 YP_129031.1 CDS PBPRA0816 NC_006370.1 904752 905114 R hypothetical protein complement(904752..905114) Photobacterium profundum SS9 3122734 YP_129032.1 CDS PBPRA0817 NC_006370.1 905161 905712 R peptidyl-prolyl cis-trans isomerase A complement(905161..905712) Photobacterium profundum SS9 3122614 YP_129033.1 CDS PBPRA0818 NC_006370.1 905712 906281 R lipoprotein complement(905712..906281) Photobacterium profundum SS9 3124074 YP_129034.1 CDS PBPRA0819 NC_006370.1 906373 907497 R methyltransferase complement(906373..907497) Photobacterium profundum SS9 3122084 YP_129035.1 CDS PBPRA0820 NC_006370.1 907621 907929 D cell division protein BolA 907621..907929 Photobacterium profundum SS9 3123482 YP_129036.1 CDS PBPRA0821 NC_006370.1 908222 909307 D hypothetical protein 908222..909307 Photobacterium profundum SS9 3123639 YP_129037.1 CDS PBPRA0822 NC_006370.1 909390 909653 R hypothetical protein complement(909390..909653) Photobacterium profundum SS9 3124069 YP_129038.1 CDS PBPRA0823 NC_006370.1 909713 911059 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 909713..911059 Photobacterium profundum SS9 3123891 YP_129039.1 CDS PBPRA0824 NC_006370.1 911063 912307 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 911063..912307 Photobacterium profundum SS9 3123339 YP_129040.1 CDS PBPRA0825 NC_006370.1 912297 913091 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 912297..913091 Photobacterium profundum SS9 3123684 YP_129041.1 CDS PBPRA0826 NC_006370.1 913084 913716 D Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 913084..913716 Photobacterium profundum SS9 3122399 YP_129042.1 CDS PBPRA0827 NC_006370.1 913724 914320 D Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 913724..914320 Photobacterium profundum SS9 3122779 YP_129043.1 CDS PBPRA0828 NC_006370.1 914344 915567 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 914344..915567 Photobacterium profundum SS9 3122624 YP_129044.1 CDS PBPRA0829 NC_006370.1 915760 916782 D thiamin biosynthesis lipoprotein ApbE 915760..916782 Photobacterium profundum SS9 3122776 YP_129045.1 CDS PBPRA0830 NC_006370.1 916792 917013 D hypothetical protein 916792..917013 Photobacterium profundum SS9 3124230 YP_129046.1 CDS PBPRA0831 NC_006370.1 917163 918395 R transcriptional regulator complement(917163..918395) Photobacterium profundum SS9 3123328 YP_129047.1 CDS PBPRA0832 NC_006370.1 918650 919726 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 918650..919726 Photobacterium profundum SS9 3125241 YP_129048.1 CDS PBPRA0833 NC_006370.1 919892 921352 R aminoacyl-histidine dipeptidase complement(919892..921352) Photobacterium profundum SS9 3123126 YP_129049.1 CDS PBPRA0834 NC_006370.1 922640 923590 R transposase complement(922640..923590) Photobacterium profundum SS9 3124153 YP_129050.1 CDS PBPRA0835 NC_006370.1 923797 925236 D xanthine/uracil permease family protein 923797..925236 Photobacterium profundum SS9 3122332 YP_129051.1 CDS PBPRA0836 NC_006370.1 925291 925749 D catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 925291..925749 Photobacterium profundum SS9 3124106 YP_129052.1 CDS frsA NC_006370.1 926000 927259 D forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation; fermentation/respiration switch protein 926000..927259 Photobacterium profundum SS9 3124739 YP_129053.1 CDS PBPRA0838 NC_006370.1 927417 927818 D involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS; DNA-binding transcriptional regulator Crl 927417..927818 Photobacterium profundum SS9 3125089 YP_129054.1 CDS PBPRA0839 NC_006370.1 928117 929253 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 928117..929253 Photobacterium profundum SS9 3123815 YP_129055.1 CDS proA NC_006370.1 929351 930607 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 929351..930607 Photobacterium profundum SS9 3124046 YP_129056.1 CDS PBPRA0841 NC_006370.1 930849 932447 D hypothetical protein 930849..932447 Photobacterium profundum SS9 3123829 YP_129057.1 CDS PBPRA0842 NC_006370.1 932578 933468 D hypothetical protein 932578..933468 Photobacterium profundum SS9 3122173 YP_129058.1 CDS PBPRA0843 NC_006370.1 933740 934501 R D,D-carboxypeptidase-related protein complement(933740..934501) Photobacterium profundum SS9 3123106 YP_129059.1 CDS PBPRA0844 NC_006370.1 934429 935562 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(934429..935562) Photobacterium profundum SS9 3123341 YP_129060.1 CDS PBPRA0845 NC_006370.1 935577 935939 R arsenate reductase complement(935577..935939) Photobacterium profundum SS9 3124841 YP_129061.1 CDS PBPRA0846 NC_006370.1 936038 936499 R hypothetical protein complement(936038..936499) Photobacterium profundum SS9 3123674 YP_129062.1 CDS PBPRA0847 NC_006370.1 936880 937173 D hypothetical protein 936880..937173 Photobacterium profundum SS9 3122673 YP_129063.1 CDS PBPRA0848 NC_006370.1 937231 937563 R outer membrane lipoprotein complement(937231..937563) Photobacterium profundum SS9 3123954 YP_129064.1 CDS PBPRA0849 NC_006370.1 937563 938189 R nitrate/nitrite response regulator protein complement(937563..938189) Photobacterium profundum SS9 3122433 YP_129065.1 CDS PBPRA0850 NC_006370.1 938199 939896 R nitrate/nitrite sensor protein NarQ complement(938199..939896) Photobacterium profundum SS9 3122092 YP_129066.1 CDS PBPRA0851 NC_006370.1 940213 940692 D (Fe-S)-binding protein 940213..940692 Photobacterium profundum SS9 3124079 YP_129067.1 CDS PBPRA0852 NC_006370.1 940707 940979 D NapD protein 940707..940979 Photobacterium profundum SS9 3123471 YP_129068.1 CDS PBPRA0853 NC_006370.1 940976 943462 D periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 940976..943462 Photobacterium profundum SS9 3123080 YP_129069.1 CDS PBPRA0854 NC_006370.1 943577 944062 D periplasmic nitrate reductase,cytochrome c-type protein 943577..944062 Photobacterium profundum SS9 3123270 YP_129070.1 CDS PBPRA0855 NC_006370.1 944123 944668 D periplasmic nitrate reductase, cytochrome c-type protein 944123..944668 Photobacterium profundum SS9 3122538 YP_129071.1 CDS PBPRA0856 NC_006370.1 945191 945640 R hypothetical protein complement(945191..945640) Photobacterium profundum SS9 3122993 YP_129072.1 CDS PBPRA0857 NC_006370.1 945667 946014 R hypothetical protein complement(945667..946014) Photobacterium profundum SS9 3124268 YP_129073.1 CDS PBPRA0858 NC_006370.1 946471 946932 D hypothetical protein 946471..946932 Photobacterium profundum SS9 3124311 YP_129074.1 CDS PBPRA0859 NC_006370.1 946938 947345 D hypothetical protein 946938..947345 Photobacterium profundum SS9 3122621 YP_129075.1 CDS PBPRA0860 NC_006370.1 947546 948442 D TyrA protein 947546..948442 Photobacterium profundum SS9 3124853 YP_129076.1 CDS PBPRA0861 NC_006370.1 948601 949110 R functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter subunit complement(948601..949110) Photobacterium profundum SS9 3122672 YP_129077.1 CDS PBPRA0862 NC_006370.1 949151 950878 R Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; phosphoenolpyruvate-protein phosphotransferase complement(949151..950878) Photobacterium profundum SS9 3122850 YP_129078.1 CDS PBPRA0863 NC_006370.1 950931 951188 R phosphocarrier protein HPr complement(950931..951188) Photobacterium profundum SS9 3123043 YP_129079.1 CDS PBPRA0864 NC_006370.1 951508 952476 R cysteine synthase A complement(951508..952476) Photobacterium profundum SS9 3122986 YP_129080.1 CDS PBPRA0865 NC_006370.1 952739 953500 R role in sulfur assimilation; sulfate transport protein CysZ complement(952739..953500) Photobacterium profundum SS9 3124485 YP_129081.1 CDS PBPRA0866 NC_006370.1 953849 954907 D cell division protein ZipA 953849..954907 Photobacterium profundum SS9 3125522 YP_129082.1 CDS ligA NC_006370.1 955019 957049 D this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 955019..957049 Photobacterium profundum SS9 3122505 YP_129083.1 CDS PBPRA0868 NC_006370.1 957471 958985 D hypothetical protein 957471..958985 Photobacterium profundum SS9 3124110 YP_129084.1 CDS PBPRA0869 NC_006370.1 959439 960473 R hypothetical protein complement(959439..960473) Photobacterium profundum SS9 3125071 YP_129085.1 CDS PBPRA0870 NC_006370.1 960497 960760 D hypothetical protein 960497..960760 Photobacterium profundum SS9 3122548 YP_129086.1 CDS PBPRA0871 NC_006370.1 961012 962004 D hypothetical protein 961012..962004 Photobacterium profundum SS9 3122027 YP_129087.1 CDS PBPRA0872 NC_006370.1 962809 964200 D hypothetical protein 962809..964200 Photobacterium profundum SS9 3122082 YP_129088.1 CDS PBPRA0873 NC_006370.1 964776 965027 D hypothetical protein 964776..965027 Photobacterium profundum SS9 3122833 YP_129089.1 CDS gltX NC_006370.1 965162 966586 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 965162..966586 Photobacterium profundum SS9 3123878 YP_129090.1 CDS PBPRA0876 NC_006370.1 967097 968239 D hypothetical protein 967097..968239 Photobacterium profundum SS9 3124154 YP_129091.1 CDS PBPRA0877 NC_006370.1 968594 969934 D integrase 968594..969934 Photobacterium profundum SS9 3123793 YP_129092.1 CDS PBPRA0878 NC_006370.1 970763 971149 D hypothetical protein 970763..971149 Photobacterium profundum SS9 3125300 YP_129093.1 CDS PBPRA0879 NC_006370.1 971158 971445 D hypothetical protein 971158..971445 Photobacterium profundum SS9 3124479 YP_129094.1 CDS PBPRA0880 NC_006370.1 971454 972146 D hypothetical protein 971454..972146 Photobacterium profundum SS9 3123231 YP_129095.1 CDS PBPRA0881 NC_006370.1 973089 973436 D transposase 973089..973436 Photobacterium profundum SS9 3123298 YP_129096.1 CDS PBPRA0882 NC_006370.1 973507 975888 D DNA methylase HsdM 973507..975888 Photobacterium profundum SS9 3124364 YP_129097.1 CDS PBPRA0883 NC_006370.1 975891 977204 D type I restriction-modification system specificity determinant 975891..977204 Photobacterium profundum SS9 3125505 YP_129098.1 CDS PBPRA0884 NC_006370.1 977210 978679 D hypothetical protein 977210..978679 Photobacterium profundum SS9 3125034 YP_129099.1 CDS PBPRA0885 NC_006370.1 978676 980715 D hypothetical protein 978676..980715 Photobacterium profundum SS9 3121942 YP_129100.1 CDS PBPRA0886 NC_006370.1 980703 983753 D type I restriction enzyme HsdR 980703..983753 Photobacterium profundum SS9 3122179 YP_129101.1 CDS PBPRA0887 NC_006370.1 984260 984640 R hypothetical protein complement(984260..984640) Photobacterium profundum SS9 3122809 YP_129102.1 CDS PBPRA0888 NC_006370.1 985300 985878 R resolvase complement(985300..985878) Photobacterium profundum SS9 3122144 YP_129103.1 CDS PBPRA0889 NC_006370.1 986509 987153 R hypothetical protein complement(986509..987153) Photobacterium profundum SS9 3122117 YP_129104.1 CDS PBPRA0890 NC_006370.1 987397 987861 R hypothetical protein complement(987397..987861) Photobacterium profundum SS9 3123111 YP_129105.1 CDS PBPRA0891 NC_006370.1 989174 990355 D hypothetical protein 989174..990355 Photobacterium profundum SS9 3123516 YP_129106.1 CDS PBPRA0893 NC_006370.1 991218 992354 R hypothetical protein complement(991218..992354) Photobacterium profundum SS9 3122198 YP_129107.1 CDS PBPRA0894 NC_006370.1 992589 993224 D hypothetical protein 992589..993224 Photobacterium profundum SS9 3125392 YP_129108.1 CDS PBPRA0895 NC_006370.1 993233 993661 D hypothetical protein 993233..993661 Photobacterium profundum SS9 3125037 YP_129109.1 CDS PBPRA0896 NC_006370.1 993677 994105 R chaperone FlgN complement(993677..994105) Photobacterium profundum SS9 3123360 YP_129110.1 CDS PBPRA0897 NC_006370.1 994152 994466 R negative regulator of flagellin synthesis FlgM complement(994152..994466) Photobacterium profundum SS9 3124061 YP_129111.1 CDS flgA NC_006370.1 994628 995335 R required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA complement(994628..995335) Photobacterium profundum SS9 3122352 YP_129112.1 CDS PBPRA0899 NC_006370.1 995465 996391 D chemotaxis CheV 995465..996391 Photobacterium profundum SS9 3122216 YP_129113.1 CDS PBPRA0900 NC_006370.1 996431 997261 D chemotaxis protein methyltransferase CheR 996431..997261 Photobacterium profundum SS9 3124756 YP_129114.1 CDS flgB NC_006370.1 997400 997795 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal-body rod protein FlgB 997400..997795 Photobacterium profundum SS9 3125423 YP_129115.1 CDS flgC NC_006370.1 997799 998215 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 997799..998215 Photobacterium profundum SS9 3122495 YP_129116.1 CDS flgD NC_006370.1 998233 998949 D acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 998233..998949 Photobacterium profundum SS9 3125476 YP_129117.1 CDS flgE NC_006370.1 999019 1000326 D the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 999019..1000326 Photobacterium profundum SS9 3122250 YP_129118.1 CDS flgF NC_006370.1 1000531 1001280 D FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1000531..1001280 Photobacterium profundum SS9 3125113 YP_129119.1 CDS flgG NC_006370.1 1001301 1002089 D makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1001301..1002089 Photobacterium profundum SS9 3124894 YP_129120.1 CDS flgH NC_006370.1 1002107 1002877 D part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 1002107..1002877 Photobacterium profundum SS9 3122719 YP_129121.1 CDS flgI NC_006370.1 1002944 1004035 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring biosynthesis protein FlgA 1002944..1004035 Photobacterium profundum SS9 3123665 YP_129122.1 CDS flgJ NC_006370.1 1004121 1005074 D Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1004121..1005074 Photobacterium profundum SS9 3123272 YP_129123.1 CDS flgK NC_006370.1 1005457 1007337 D with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 1005457..1007337 Photobacterium profundum SS9 3123006 YP_129124.1 CDS flgL NC_006370.1 1007350 1008540 D with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.; flagellar hook-associated protein FlgL 1007350..1008540 Photobacterium profundum SS9 3125465 YP_129125.1 CDS PBPRA0912 NC_006370.1 1008775 1009923 D structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus; flagellin 1008775..1009923 Photobacterium profundum SS9 3124222 YP_129126.1 CDS PBPRA0913 NC_006370.1 1010212 1011393 D structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus; flagellin 1010212..1011393 Photobacterium profundum SS9 3124132 YP_129127.1 CDS PBPRA0914 NC_006370.1 1011509 1011943 D possibly involved in flagella export; flagellar protein FlaG 1011509..1011943 Photobacterium profundum SS9 3123412 YP_129128.1 CDS PBPRA0915 NC_006370.1 1011969 1013342 D flagellar hook-associated protein 2 1011969..1013342 Photobacterium profundum SS9 3124172 YP_129129.1 CDS PBPRA0916 NC_006370.1 1013450 1013734 D flagellar rod protein FlaI 1013450..1013734 Photobacterium profundum SS9 3122247 YP_129130.1 CDS fliS NC_006370.1 1013744 1014154 D flagellin specific chaperone; flagellar protein FliS 1013744..1014154 Photobacterium profundum SS9 3124719 YP_129131.1 CDS PBPRA0918 NC_006370.1 1014497 1015954 D polar flagellar protein FlaK 1014497..1015954 Photobacterium profundum SS9 3123634 YP_129132.1 CDS PBPRA0919 NC_006370.1 1016318 1017523 R transposase complement(1016318..1017523) Photobacterium profundum SS9 3122938 YP_129133.1 CDS PBPRA0920 NC_006370.1 1017834 1018919 D sensory box sensor histidine kinase 1017834..1018919 Photobacterium profundum SS9 3123066 YP_129134.1 CDS PBPRA0921 NC_006370.1 1018950 1020350 D response regulator 1018950..1020350 Photobacterium profundum SS9 3123311 YP_129135.1 CDS fliE NC_006370.1 1020472 1020783 D forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 1020472..1020783 Photobacterium profundum SS9 3122426 YP_129136.1 CDS fliF NC_006370.1 1020800 1022542 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1020800..1022542 Photobacterium profundum SS9 3122531 YP_129137.1 CDS fliG NC_006370.1 1022529 1023578 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1022529..1023578 Photobacterium profundum SS9 3122940 YP_129138.1 CDS fliH NC_006370.1 1023613 1024413 D binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 1023613..1024413 Photobacterium profundum SS9 3122197 YP_129139.1 CDS fliI NC_006370.1 1024413 1025735 D involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1024413..1025735 Photobacterium profundum SS9 3123138 YP_129140.1 CDS fliJ NC_006370.1 1025766 1026206 D rod/hook and filament chaperone; flagellar biosynthesis chaperone 1025766..1026206 Photobacterium profundum SS9 3125099 YP_129141.1 CDS PBPRA0928 NC_006370.1 1026278 1028185 D polar flagellar hook-length control protein FliK 1026278..1028185 Photobacterium profundum SS9 3124565 YP_129142.1 CDS fliL NC_006370.1 1028267 1028761 D interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body protein FliL 1028267..1028761 Photobacterium profundum SS9 3121970 YP_129143.1 CDS fliM NC_006370.1 1028769 1029815 D with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 1028769..1029815 Photobacterium profundum SS9 3123862 YP_129144.1 CDS fliN NC_006370.1 1029833 1030222 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 1029833..1030222 Photobacterium profundum SS9 3125251 YP_129145.1 CDS fliP NC_006370.1 1030622 1031476 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 1030622..1031476 Photobacterium profundum SS9 3123940 YP_129146.1 CDS fliQ NC_006370.1 1031539 1031808 D with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 1031539..1031808 Photobacterium profundum SS9 3124420 YP_129147.1 CDS fliR NC_006370.1 1031894 1032676 D FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 1031894..1032676 Photobacterium profundum SS9 3124736 YP_129148.1 CDS flhB NC_006370.1 1032676 1033806 D membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1032676..1033806 Photobacterium profundum SS9 3123276 YP_129149.1 CDS flhA NC_006370.1 1034110 1036206 D membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1034110..1036206 Photobacterium profundum SS9 3125327 YP_129150.2 CDS flhF NC_006370.1 1036311 1038053 D positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 1036311..1038053 Photobacterium profundum SS9 3123104 YP_129151.1 CDS PBPRA0938 NC_006370.1 1038046 1038933 D MinD-related protein 1038046..1038933 Photobacterium profundum SS9 3123288 YP_129152.1 CDS fliA NC_006370.1 1038926 1039648 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 1038926..1039648 Photobacterium profundum SS9 3123980 YP_129153.1 CDS PBPRA0940 NC_006370.1 1039712 1040095 D chemotaxis protein CheY 1039712..1040095 Photobacterium profundum SS9 3123330 YP_129154.1 CDS PBPRA0941 NC_006370.1 1040134 1040850 D chemotaxis protein CheZ 1040134..1040850 Photobacterium profundum SS9 3122696 YP_129155.1 CDS PBPRA0942 NC_006370.1 1040860 1043100 D chemotaxis protein CheA 1040860..1043100 Photobacterium profundum SS9 3124204 YP_129156.1 CDS PBPRA0943 NC_006370.1 1043187 1044371 D regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1043187..1044371 Photobacterium profundum SS9 3122451 YP_129157.1 CDS PBPRA0944 NC_006370.1 1044382 1045161 D SOJ-like and chromosome partitioning protein 1044382..1045161 Photobacterium profundum SS9 3124556 YP_129158.1 CDS PBPRA0945 NC_006370.1 1045151 1046272 D hypothetical protein 1045151..1046272 Photobacterium profundum SS9 3124605 YP_129159.1 CDS PBPRA0946 NC_006370.1 1046296 1046790 D purine-binding chemotaxis protein CheW 1046296..1046790 Photobacterium profundum SS9 3124473 YP_129160.1 CDS PBPRA0947 NC_006370.1 1046766 1047224 D hypothetical protein 1046766..1047224 Photobacterium profundum SS9 3123562 YP_129161.1 CDS PBPRA0948 NC_006370.1 1047854 1048504 D ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 1047854..1048504 Photobacterium profundum SS9 3125479 YP_129162.1 CDS PBPRA0949 NC_006370.1 1048510 1049178 D heme exporter protein B 1048510..1049178 Photobacterium profundum SS9 3122098 YP_129163.1 CDS PBPRA0950 NC_006370.1 1049468 1050076 D heme exporter protein C 1049468..1050076 Photobacterium profundum SS9 3123094 YP_129164.1 CDS PBPRA0951 NC_006370.1 1050287 1050772 D CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 1050287..1050772 Photobacterium profundum SS9 3123397 YP_129165.1 CDS PBPRA0952 NC_006370.1 1050769 1052757 D cytochrome c-type biogenesis protein CcmF 1050769..1052757 Photobacterium profundum SS9 3125425 YP_129166.1 CDS PBPRA0953 NC_006370.1 1052777 1053304 D thiol:disulfide interchange protein DsbE 1052777..1053304 Photobacterium profundum SS9 3123850 YP_129167.1 CDS PBPRA0954 NC_006370.1 1053301 1053828 D cytochrome c-type biogenesis protein 1053301..1053828 Photobacterium profundum SS9 3125537 YP_129168.1 CDS PBPRA0955 NC_006370.1 1053825 1055096 D cytochrome c-type biogenesis protein 1053825..1055096 Photobacterium profundum SS9 3125352 YP_129169.1 CDS PBPRA0956 NC_006370.1 1055195 1055980 D hypothetical protein 1055195..1055980 Photobacterium profundum SS9 3125488 YP_129170.1 CDS PBPRA0957 NC_006370.1 1056086 1057378 R long-chain fatty acid transport protein complement(1056086..1057378) Photobacterium profundum SS9 3125464 YP_129171.1 CDS PBPRA0958 NC_006370.1 1057734 1058984 R long-chain fatty acid transport protein complement(1057734..1058984) Photobacterium profundum SS9 3125066 YP_129172.1 CDS PBPRA0959 NC_006370.1 1059302 1060015 R hypothetical protein complement(1059302..1060015) Photobacterium profundum SS9 3125096 YP_129173.1 CDS PBPRA0960 NC_006370.1 1060002 1060637 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(1060002..1060637) Photobacterium profundum SS9 3125150 YP_129174.1 CDS fadI NC_006370.1 1061286 1062596 D FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 1061286..1062596 Photobacterium profundum SS9 3125106 YP_129175.1 CDS fadJ NC_006370.1 1062596 1064743 D multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha 1062596..1064743 Photobacterium profundum SS9 3125191 YP_129176.1 CDS PBPRA0963 NC_006370.1 1064883 1067708 R peptidase insulinase family complement(1064883..1067708) Photobacterium profundum SS9 3125080 YP_129177.1 CDS PBPRA0964 NC_006370.1 1068154 1068624 D phosphohistidine phosphatase 1068154..1068624 Photobacterium profundum SS9 3124887 YP_129178.1 CDS PBPRA0965 NC_006370.1 1068774 1069217 D hypothetical protein 1068774..1069217 Photobacterium profundum SS9 3122467 YP_129179.1 CDS PBPRA0966 NC_006370.1 1069338 1069868 R hypothetical protein complement(1069338..1069868) Photobacterium profundum SS9 3124871 YP_129180.1 CDS PBPRA0967 NC_006370.1 1069922 1070854 D involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1069922..1070854 Photobacterium profundum SS9 3124897 YP_129181.1 CDS PBPRA0968 NC_006370.1 1070948 1071646 R YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His; queuosine biosynthesis protein QueC complement(1070948..1071646) Photobacterium profundum SS9 3124999 YP_129182.1 CDS PBPRA0969 NC_006370.1 1071930 1073015 R cysteine synthase/cystathionine (CysK) complement(1071930..1073015) Photobacterium profundum SS9 3125131 YP_129183.1 CDS PBPRA0970 NC_006370.1 1073196 1073657 D AsnC family transcriptional regulator 1073196..1073657 Photobacterium profundum SS9 3122886 YP_129184.1 CDS PBPRA0971 NC_006370.1 1073973 1075715 D transport ATP-binding protein MsbA 1073973..1075715 Photobacterium profundum SS9 3125213 YP_129185.1 CDS PBPRA0972 NC_006370.1 1075715 1077493 D ABC transporter ATP-binding protein 1075715..1077493 Photobacterium profundum SS9 3124972 YP_129186.1 CDS PBPRA0973 NC_006370.1 1077558 1078445 R acyl-CoA thioesterase II complement(1077558..1078445) Photobacterium profundum SS9 3122135 YP_129187.1 CDS PBPRA0974 NC_006370.1 1078549 1078968 D lipoprotein-like protein 1078549..1078968 Photobacterium profundum SS9 3125130 YP_129188.1 CDS PBPRA0975 NC_006370.1 1079100 1079465 R methylated DNA-proteincysteine methyltransferase complement(1079100..1079465) Photobacterium profundum SS9 3124640 YP_129189.1 CDS PBPRA0976 NC_006370.1 1079510 1080241 D hypothetical protein 1079510..1080241 Photobacterium profundum SS9 3125298 YP_129190.1 CDS PBPRA0977 NC_006370.1 1080340 1080591 D hypothetical protein 1080340..1080591 Photobacterium profundum SS9 3123583 YP_129191.1 CDS PBPRA0978 NC_006370.1 1080630 1080959 D hypothetical protein 1080630..1080959 Photobacterium profundum SS9 3125341 YP_129192.1 CDS PBPRA0979 NC_006370.1 1081249 1082979 D transposase 1081249..1082979 Photobacterium profundum SS9 3122227 YP_129193.1 CDS PBPRA0980 NC_006370.1 1082942 1083892 R transposase complement(1082942..1083892) Photobacterium profundum SS9 3124626 YP_129194.1 CDS PBPRA0981 NC_006370.1 1084150 1084629 R copper tolerance protein complement(1084150..1084629) Photobacterium profundum SS9 3123442 YP_129195.1 CDS PBPRA0982 NC_006370.1 1084646 1085575 R copper resistance protein B precursor complement(1084646..1085575) Photobacterium profundum SS9 3124738 YP_129196.1 CDS PBPRA0983 NC_006370.1 1085572 1087365 R hypothetical protein complement(1085572..1087365) Photobacterium profundum SS9 3122070 YP_129197.1 CDS PBPRA0984 NC_006370.1 1087502 1087888 D hypothetical protein 1087502..1087888 Photobacterium profundum SS9 3122204 YP_129198.1 CDS PBPRA0985 NC_006370.1 1087975 1088280 D hypothetical protein 1087975..1088280 Photobacterium profundum SS9 3122134 YP_129199.1 CDS PBPRA0986 NC_006370.1 1088363 1089058 D two component response regulator transcription regulator protein 1088363..1089058 Photobacterium profundum SS9 3123655 YP_129200.1 CDS PBPRA0987 NC_006370.1 1089055 1090407 D two component sensor protein 1089055..1090407 Photobacterium profundum SS9 3121993 YP_129201.1 CDS PBPRA0988 NC_006370.1 1090636 1090947 D hypothetical protein 1090636..1090947 Photobacterium profundum SS9 3122413 YP_129202.1 CDS PBPRA0989 NC_006370.1 1091902 1093857 D methyl-accepting chemotaxis protein 1091902..1093857 Photobacterium profundum SS9 3122007 YP_129203.1 CDS PBPRA0990 NC_006370.1 1094452 1095387 D transporter 1094452..1095387 Photobacterium profundum SS9 3122165 YP_129204.1 CDS PBPRA0991 NC_006370.1 1095400 1096860 D hypothetical protein 1095400..1096860 Photobacterium profundum SS9 3124924 YP_129205.1 CDS PBPRA0992 NC_006370.1 1096917 1097828 R transcriptional regulator complement(1096917..1097828) Photobacterium profundum SS9 3122108 YP_129206.1 CDS PBPRA0993 NC_006370.1 1098327 1099559 D amidinotransferase 1098327..1099559 Photobacterium profundum SS9 3122981 YP_129207.1 CDS PBPRA0994 NC_006370.1 1099969 1102011 D hypothetical protein 1099969..1102011 Photobacterium profundum SS9 3122693 YP_129208.1 CDS PBPRA0995 NC_006370.1 1102412 1102900 D hypothetical protein 1102412..1102900 Photobacterium profundum SS9 3122573 YP_129209.1 CDS PBPRA0996 NC_006370.1 1103057 1103587 R hypothetical protein complement(1103057..1103587) Photobacterium profundum SS9 3122740 YP_129210.1 CDS PBPRA0997 NC_006370.1 1103588 1104319 R hypothetical protein complement(1103588..1104319) Photobacterium profundum SS9 3125389 YP_129211.1 CDS PBPRA0998 NC_006370.1 1104687 1106576 R hypothetical protein complement(1104687..1106576) Photobacterium profundum SS9 3121969 YP_129212.1 CDS PBPRA0999 NC_006370.1 1106877 1107269 D hypothetical protein 1106877..1107269 Photobacterium profundum SS9 3122585 YP_129213.1 CDS PBPRA1000 NC_006370.1 1107317 1108684 R signal transduction protein complement(1107317..1108684) Photobacterium profundum SS9 3124369 YP_129214.1 CDS PBPRA1001 NC_006370.1 1108681 1109358 R transcriptionalregulator complement(1108681..1109358) Photobacterium profundum SS9 3122430 YP_129215.1 CDS PBPRA1002 NC_006370.1 1109413 1109961 R hypothetical protein complement(1109413..1109961) Photobacterium profundum SS9 3122383 YP_129216.1 CDS PBPRA1003 NC_006370.1 1110086 1113211 R cation efflux system transmembrane protein complement(1110086..1113211) Photobacterium profundum SS9 3125055 YP_129217.1 CDS PBPRA1004 NC_006370.1 1113208 1114788 R cation efflux system transmembrane protein complement(1113208..1114788) Photobacterium profundum SS9 3123423 YP_129218.1 CDS PBPRA1005 NC_006370.1 1114797 1116149 R outer membrane cation efflux protein complement(1114797..1116149) Photobacterium profundum SS9 3122586 YP_129219.1 CDS PBPRA1006 NC_006370.1 1116343 1116693 R hypothetical protein complement(1116343..1116693) Photobacterium profundum SS9 3122838 YP_129220.1 CDS PBPRA1007 NC_006370.1 1117368 1118324 D cation efflux family protein 1117368..1118324 Photobacterium profundum SS9 3122894 YP_129221.1 CDS PBPRA1008 NC_006370.1 1118344 1118760 D MarR family transcriptional regulator 1118344..1118760 Photobacterium profundum SS9 3122954 YP_129222.1 CDS PBPRA1009 NC_006370.1 1118814 1119011 R hypothetical protein complement(1118814..1119011) Photobacterium profundum SS9 3122601 YP_129223.1 CDS PBPRA1010 NC_006370.1 1119051 1119602 R primosomal replication protein N`` complement(1119051..1119602) Photobacterium profundum SS9 3122785 YP_129224.1 CDS dinG NC_006370.1 1119721 1121799 R helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG complement(1119721..1121799) Photobacterium profundum SS9 3122930 YP_129225.1 CDS PBPRA1012 NC_006370.1 1122337 1123317 D OmpH porin-like protein H precursor 1122337..1123317 Photobacterium profundum SS9 3122534 YP_129226.1 CDS PBPRA1013 NC_006370.1 1123518 1124168 D hypothetical protein 1123518..1124168 Photobacterium profundum SS9 3122952 YP_129227.1 CDS PBPRA1014 NC_006370.1 1124325 1124687 R DksA-type zinc finger protein complement(1124325..1124687) Photobacterium profundum SS9 3125283 YP_129228.1 CDS PBPRA1015 NC_006370.1 1125068 1125442 D hypothetical protein 1125068..1125442 Photobacterium profundum SS9 3124899 YP_129229.1 CDS PBPRA1016 NC_006370.1 1125634 1126158 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1125634..1126158 Photobacterium profundum SS9 3123526 YP_129230.1 CDS PBPRA1017 NC_006370.1 1126323 1128584 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 1126323..1128584 Photobacterium profundum SS9 3123458 YP_129231.1 CDS PBPRA1018 NC_006370.1 1128661 1128972 D hypothetical protein 1128661..1128972 Photobacterium profundum SS9 3123127 YP_129232.1 CDS recR NC_006370.1 1128976 1129584 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1128976..1129584 Photobacterium profundum SS9 3123433 YP_129233.1 CDS PBPRA1020 NC_006370.1 1130084 1131163 D hypothetical protein 1130084..1131163 Photobacterium profundum SS9 3123137 YP_129234.1 CDS PBPRA1021 NC_006370.1 1131245 1131793 R ToxS complement(1131245..1131793) Photobacterium profundum SS9 3122118 YP_129235.1 CDS PBPRA1022 NC_006370.1 1131784 1132656 R transcription activator ToxR complement(1131784..1132656) Photobacterium profundum SS9 3123119 YP_129236.1 CDS PBPRA1023 NC_006370.1 1132849 1134753 D molecular chaperone; heat shock protein 90 1132849..1134753 Photobacterium profundum SS9 3125247 YP_129237.1 CDS adk NC_006370.1 1135012 1135656 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1135012..1135656 Photobacterium profundum SS9 3125182 YP_129238.1 CDS hemH NC_006370.1 1135876 1136874 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1135876..1136874 Photobacterium profundum SS9 3125329 YP_129239.1 CDS PBPRA1026 NC_006370.1 1136996 1138300 D inosine-guanosine kinase 1136996..1138300 Photobacterium profundum SS9 3123278 YP_129240.1 CDS asnB NC_006370.1 1138453 1140120 R functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B complement(1138453..1140120) Photobacterium profundum SS9 3123305 YP_129241.1 CDS PBPRA1028 NC_006370.1 1140420 1142006 R glutathione-regulated potassium-efflux system protein KefB complement(1140420..1142006) Photobacterium profundum SS9 3123414 YP_129242.1 CDS PBPRA1029 NC_006370.1 1142297 1143511 R N-acetylglucosamine repressor complement(1142297..1143511) Photobacterium profundum SS9 3123152 YP_129243.1 CDS nagA NC_006370.1 1143515 1144657 R catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; N-acetylglucosamine-6-phosphate deacetylase complement(1143515..1144657) Photobacterium profundum SS9 3123831 YP_129244.1 CDS nagB NC_006370.1 1144668 1145468 R catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase complement(1144668..1145468) Photobacterium profundum SS9 3123601 YP_129245.1 CDS PBPRA1032 NC_006370.1 1145725 1147215 D PTS permease for N-acetylglucosamine and glucose 1145725..1147215 Photobacterium profundum SS9 3124919 YP_129246.1 CDS PBPRA1033 NC_006370.1 1147302 1150040 D beta-N-acetylhexosaminidase 1147302..1150040 Photobacterium profundum SS9 3125035 YP_129247.1 CDS PBPRA1034 NC_006370.1 1150392 1152059 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 1150392..1152059 Photobacterium profundum SS9 3122893 YP_129248.1 CDS fur NC_006370.1 1152168 1152614 R negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator complement(1152168..1152614) Photobacterium profundum SS9 3125532 YP_129249.1 CDS PBPRA1036 NC_006370.1 1153285 1153812 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA complement(1153285..1153812) Photobacterium profundum SS9 3122386 YP_129250.1 CDS PBPRA1037 NC_006370.1 1153977 1154198 R hypothetical protein complement(1153977..1154198) Photobacterium profundum SS9 3123903 YP_129251.1 CDS PBPRA1038 NC_006370.1 1154262 1155026 R esterase complement(1154262..1155026) Photobacterium profundum SS9 3123325 YP_129252.2 CDS PBPRA1039 NC_006370.1 1155131 1155667 D negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 1155131..1155667 Photobacterium profundum SS9 3121954 YP_129253.1 CDS PBPRA1040 NC_006370.1 1155703 1157349 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 1155703..1157349 Photobacterium profundum SS9 3122865 YP_129254.1 CDS PBPRA1041 NC_006370.1 1157437 1158255 R hypothetical protein complement(1157437..1158255) Photobacterium profundum SS9 3124627 YP_129255.1 CDS PBPRA1042 NC_006370.1 1158657 1159415 D hypothetical protein 1158657..1159415 Photobacterium profundum SS9 3122742 YP_129256.2 CDS gltA NC_006370.1 1159467 1160756 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase complement(1159467..1160756) Photobacterium profundum SS9 3123611 YP_129257.1 CDS sdhC NC_006370.1 1161168 1161548 D succinate dehydrogenase cytochrome b556 large membrane subunit 1161168..1161548 Photobacterium profundum SS9 3124264 YP_129258.1 CDS PBPRA1045 NC_006370.1 1161542 1161889 D succinate dehydrogenase, hydrophobic membrane anchor protein 1161542..1161889 Photobacterium profundum SS9 3125249 YP_129259.2 CDS sdhA NC_006370.1 1161890 1163656 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1161890..1163656 Photobacterium profundum SS9 3122035 YP_129260.1 CDS sdhB NC_006370.1 1163670 1164383 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 1163670..1164383 Photobacterium profundum SS9 3122450 YP_129261.1 CDS sucA NC_006370.1 1164493 1167306 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 1164493..1167306 Photobacterium profundum SS9 3124166 YP_129262.1 CDS PBPRA1049 NC_006370.1 1167335 1168540 D component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 1167335..1168540 Photobacterium profundum SS9 3124575 YP_129263.1 CDS sucC NC_006370.1 1168678 1169844 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 1168678..1169844 Photobacterium profundum SS9 3122324 YP_129264.1 CDS PBPRA1051 NC_006370.1 1169844 1170716 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 1169844..1170716 Photobacterium profundum SS9 3122236 YP_129265.1 CDS PBPRA1052 NC_006370.1 1171055 1171363 D hypothetical protein 1171055..1171363 Photobacterium profundum SS9 3123513 YP_129266.1 CDS PBPRA1053 NC_006370.1 1171474 1172259 R ABC-type Mn2+/Zn2+ transport system, permease component complement(1171474..1172259) Photobacterium profundum SS9 3123837 YP_129267.1 CDS PBPRA1054 NC_006370.1 1172252 1173025 R zinc ABC transporter ATP-binding protein complement(1172252..1173025) Photobacterium profundum SS9 3125086 YP_129268.1 CDS PBPRA1055 NC_006370.1 1173034 1173402 D hypothetical protein 1173034..1173402 Photobacterium profundum SS9 3124391 YP_129269.1 CDS PBPRA1056 NC_006370.1 1173413 1174015 D zinc ABC transporter periplasmic substrate-binding protein 1173413..1174015 Photobacterium profundum SS9 3123593 YP_129270.1 CDS PBPRA1057 NC_006370.1 1174018 1175367 D hypothetical protein 1174018..1175367 Photobacterium profundum SS9 3125468 YP_129271.1 CDS PBPRA1058 NC_006370.1 1175604 1175831 D ferrous iron transport protein A 1175604..1175831 Photobacterium profundum SS9 3123548 YP_129272.1 CDS PBPRA1059 NC_006370.1 1175831 1178104 D ferrous iron transport protein B 1175831..1178104 Photobacterium profundum SS9 3124356 YP_129273.1 CDS PBPRA1060 NC_006370.1 1178101 1178343 D hypothetical protein 1178101..1178343 Photobacterium profundum SS9 3124750 YP_129274.1 CDS PBPRA1061 NC_006370.1 1178435 1178863 R diadenosine tetraphosphate hydrolase complement(1178435..1178863) Photobacterium profundum SS9 3122063 YP_129275.1 CDS PBPRA1062 NC_006370.1 1179276 1179893 D hypothetical protein 1179276..1179893 Photobacterium profundum SS9 3124482 YP_129276.1 CDS PBPRA1063 NC_006370.1 1180062 1181081 R GGDEF family protein complement(1180062..1181081) Photobacterium profundum SS9 3122199 YP_129277.1 CDS argS NC_006370.1 1181301 1183031 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(1181301..1183031) Photobacterium profundum SS9 3124269 YP_129278.1 CDS PBPRA1065 NC_006370.1 1183461 1184051 D hypothetical protein 1183461..1184051 Photobacterium profundum SS9 3122716 YP_129279.1 CDS purU NC_006370.1 1184151 1184990 R produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase complement(1184151..1184990) Photobacterium profundum SS9 3123859 YP_129280.1 CDS PBPRA1067 NC_006370.1 1185250 1186410 R hypothetical protein complement(1185250..1186410) Photobacterium profundum SS9 3124367 YP_129281.1 CDS PBPRA1068 NC_006370.1 1186413 1187057 R hypothetical protein complement(1186413..1187057) Photobacterium profundum SS9 3122799 YP_129282.1 CDS PBPRA1069 NC_006370.1 1187333 1187977 R hypothetical protein complement(1187333..1187977) Photobacterium profundum SS9 3123184 YP_129283.1 CDS PBPRA1070 NC_006370.1 1188489 1190432 D ATP-dependent helicase 1188489..1190432 Photobacterium profundum SS9 3124493 YP_129284.1 CDS PBPRA1071 NC_006370.1 1190448 1191158 D hypothetical protein 1190448..1191158 Photobacterium profundum SS9 3124475 YP_129285.1 CDS PBPRA1072 NC_006370.1 1191282 1191563 D hypothetical protein 1191282..1191563 Photobacterium profundum SS9 3124689 YP_129286.1 CDS PBPRA1073 NC_006370.1 1191710 1192264 D starvation-inducible outer membrane lipoprotein 1191710..1192264 Photobacterium profundum SS9 3123834 YP_129287.1 CDS PBPRA1074 NC_006370.1 1192296 1193198 D hydrolase/acyltransferase 1192296..1193198 Photobacterium profundum SS9 3123502 YP_129288.1 CDS PBPRA1075 NC_006370.1 1193351 1195042 D Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 1193351..1195042 Photobacterium profundum SS9 3123459 YP_129289.1 CDS PBPRA1076 NC_006370.1 1195431 1196555 D ribonuclease D 1195431..1196555 Photobacterium profundum SS9 3122424 YP_129290.1 CDS minE NC_006370.1 1196616 1196876 R works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE complement(1196616..1196876) Photobacterium profundum SS9 3123084 YP_129291.1 CDS PBPRA1078 NC_006370.1 1196883 1197695 R septum site-determining protein MinD complement(1196883..1197695) Photobacterium profundum SS9 3123741 YP_129292.1 CDS minC NC_006370.1 1197718 1198380 R blocks the formation of polar Z-ring septums; septum formation inhibitor complement(1197718..1198380) Photobacterium profundum SS9 3122771 YP_129293.1 CDS PBPRA1080 NC_006370.1 1198561 1198881 D hypothetical protein 1198561..1198881 Photobacterium profundum SS9 3122130 YP_129294.1 CDS PBPRA1081 NC_006370.1 1198890 1199861 D lytic murein transglycosylase 1198890..1199861 Photobacterium profundum SS9 3122147 YP_129295.1 CDS PBPRA1082 NC_006370.1 1200362 1200757 R DNA-binding protein H-NS complement(1200362..1200757) Photobacterium profundum SS9 3122845 YP_129296.1 CDS PBPRA1083 NC_006370.1 1201505 1203004 D Na+/H+ antiporter 1201505..1203004 Photobacterium profundum SS9 3122709 YP_129297.1 CDS PBPRA1084 NC_006370.1 1203249 1203827 D catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 1203249..1203827 Photobacterium profundum SS9 3123989 YP_129298.1 CDS PBPRA1085 NC_006370.1 1203949 1204572 R catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein complement(1203949..1204572) Photobacterium profundum SS9 3123515 YP_129299.1 CDS PBPRA1086 NC_006370.1 1204569 1205342 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(1204569..1205342) Photobacterium profundum SS9 3124254 YP_129300.2 CDS PBPRA1087 NC_006370.1 1205362 1206096 R catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase complement(1205362..1206096) Photobacterium profundum SS9 3124577 YP_129301.1 CDS hisH NC_006370.1 1206321 1206953 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(1206321..1206953) Photobacterium profundum SS9 3122244 YP_129302.1 CDS PBPRA1089 NC_006370.1 1206953 1208038 R catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase complement(1206953..1208038) Photobacterium profundum SS9 3123382 YP_129303.1 CDS PBPRA1090 NC_006370.1 1208056 1209180 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(1208056..1209180) Photobacterium profundum SS9 3124655 YP_129304.1 CDS hisD NC_006370.1 1209183 1210514 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(1209183..1210514) Photobacterium profundum SS9 3123241 YP_129305.1 CDS hisG NC_006370.1 1210519 1211415 R long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase complement(1210519..1211415) Photobacterium profundum SS9 3124669 YP_129306.1 CDS PBPRA1093 NC_006370.1 1212301 1212837 R hypothetical protein complement(1212301..1212837) Photobacterium profundum SS9 3124702 YP_129307.1 CDS PBPRA1094 NC_006370.1 1212840 1214063 R signal transduction protein complement(1212840..1214063) Photobacterium profundum SS9 3122564 YP_129308.1 CDS PBPRA1095 NC_006370.1 1214387 1215232 D hypothetical protein 1214387..1215232 Photobacterium profundum SS9 3124624 YP_129309.1 CDS PBPRA1096 NC_006370.1 1215315 1216052 R catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase complement(1215315..1216052) Photobacterium profundum SS9 3125014 YP_129310.1 CDS PBPRA1097 NC_006370.1 1216093 1216590 R peptidyl-prolyl cis-trans isomerase B complement(1216093..1216590) Photobacterium profundum SS9 3124934 YP_129311.1 CDS cysS NC_006370.1 1216806 1218200 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1216806..1218200 Photobacterium profundum SS9 3124958 YP_129312.1 CDS PBPRA1099 NC_006370.1 1218275 1218517 D hypothetical protein 1218275..1218517 Photobacterium profundum SS9 3125406 YP_129313.1 CDS glpQ NC_006370.1 1218623 1219705 D hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase 1218623..1219705 Photobacterium profundum SS9 3122327 YP_129314.1 CDS PBPRA1101 NC_006370.1 1219923 1220741 R potassium channel complement(1219923..1220741) Photobacterium profundum SS9 3122380 YP_129315.1 CDS PBPRA1102 NC_006370.1 1220947 1221603 R hypothetical protein complement(1220947..1221603) Photobacterium profundum SS9 3122706 YP_129316.1 CDS PBPRA1103 NC_006370.1 1222327 1225032 D bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1222327..1225032 Photobacterium profundum SS9 3123068 YP_129317.1 CDS PBPRA1104 NC_006370.1 1225165 1225863 R short chain dehydrogenase complement(1225165..1225863) Photobacterium profundum SS9 3122978 YP_129318.1 CDS PBPRA1105 NC_006370.1 1226063 1226572 R hypothetical protein complement(1226063..1226572) Photobacterium profundum SS9 3124412 YP_129319.1 CDS PBPRA1106 NC_006370.1 1226798 1227784 R hypothetical protein complement(1226798..1227784) Photobacterium profundum SS9 3122406 YP_129320.1 CDS PBPRA1107 NC_006370.1 1227788 1229299 R hypothetical protein complement(1227788..1229299) Photobacterium profundum SS9 3123182 YP_129321.1 CDS PBPRA1108 NC_006370.1 1229314 1230090 R hypothetical protein complement(1229314..1230090) Photobacterium profundum SS9 3122239 YP_129322.1 CDS PBPRA1109 NC_006370.1 1230180 1231154 R hypothetical protein complement(1230180..1231154) Photobacterium profundum SS9 3122858 YP_129323.1 CDS PBPRA1110 NC_006370.1 1231172 1231906 R hypothetical protein complement(1231172..1231906) Photobacterium profundum SS9 3123142 YP_129324.1 CDS PBPRA1111 NC_006370.1 1232083 1232973 R hypothetical protein complement(1232083..1232973) Photobacterium profundum SS9 3121949 YP_129325.1 CDS aspS NC_006370.1 1233303 1235096 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1233303..1235096 Photobacterium profundum SS9 3123405 YP_129326.1 CDS PBPRA1113 NC_006370.1 1235211 1235954 D hypothetical protein 1235211..1235954 Photobacterium profundum SS9 3122972 YP_129327.1 CDS ruvC NC_006370.1 1235992 1236513 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1235992..1236513 Photobacterium profundum SS9 3123693 YP_129328.1 CDS PBPRA1115 NC_006370.1 1236736 1238196 D methyl-accepting chemotaxis protein 1236736..1238196 Photobacterium profundum SS9 3124774 YP_129329.2 CDS ruvA NC_006370.1 1238325 1238945 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1238325..1238945 Photobacterium profundum SS9 3123806 YP_129330.1 CDS ruvB NC_006370.1 1238967 1239980 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1238967..1239980 Photobacterium profundum SS9 3123083 YP_129331.1 CDS PBPRA1118 NC_006370.1 1241088 1243112 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1241088..1243112 Photobacterium profundum SS9 3123211 YP_129332.1 CDS PBPRA1119 NC_006370.1 1243539 1244996 D repressor protein luxO 1243539..1244996 Photobacterium profundum SS9 3122186 YP_129333.1 CDS PBPRA1120 NC_006370.1 1245000 1245359 D phosphorelay protein 1245000..1245359 Photobacterium profundum SS9 3123714 YP_129334.1 CDS PBPRA1121 NC_006370.1 1245321 1246226 R hypothetical protein complement(1245321..1246226) Photobacterium profundum SS9 3123802 YP_129335.1 CDS PBPRA1122 NC_006370.1 1246424 1246999 R hypothetical protein complement(1246424..1246999) Photobacterium profundum SS9 3124068 YP_129336.1 CDS PBPRA1123 NC_006370.1 1247174 1247470 R hypothetical protein complement(1247174..1247470) Photobacterium profundum SS9 3123864 YP_129337.1 CDS moaA NC_006370.1 1247725 1248732 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 1247725..1248732 Photobacterium profundum SS9 3123501 YP_129338.1 CDS moaC NC_006370.1 1248865 1249362 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 1248865..1249362 Photobacterium profundum SS9 3122636 YP_129339.1 CDS moaD NC_006370.1 1249359 1249604 D catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase small subunit 1249359..1249604 Photobacterium profundum SS9 3124734 YP_129340.1 CDS PBPRA1127 NC_006370.1 1249607 1250056 D molybdenum cofactor biosynthesisprotein E 1249607..1250056 Photobacterium profundum SS9 3124091 YP_129341.1 CDS PBPRA1128 NC_006370.1 1250645 1251880 D porin 1250645..1251880 Photobacterium profundum SS9 3123988 YP_129342.1 CDS PBPRA1129 NC_006370.1 1252073 1252519 R transcriptional regulator complement(1252073..1252519) Photobacterium profundum SS9 3123470 YP_129343.1 CDS PBPRA1130 NC_006370.1 1252921 1253190 D hypothetical protein 1252921..1253190 Photobacterium profundum SS9 3124223 YP_129344.1 CDS PBPRA1131 NC_006370.1 1253769 1255472 D oligopeptide ABC transporter,periplasmic oligopeptide-binding protein 1253769..1255472 Photobacterium profundum SS9 3124663 YP_129345.1 CDS oppB NC_006370.1 1255567 1256487 D oligopeptide transporter permease 1255567..1256487 Photobacterium profundum SS9 3124684 YP_129346.1 CDS PBPRA1133 NC_006370.1 1256499 1257413 D oligopeptide ABC transporter 1256499..1257413 Photobacterium profundum SS9 3122008 YP_129347.1 CDS oppD NC_006370.1 1257501 1258466 D oligopeptide transporter ATP-binding component 1257501..1258466 Photobacterium profundum SS9 3122891 YP_129348.1 CDS PBPRA1135 NC_006370.1 1258466 1259455 D oligopeptide ABC transporter,ATP-binding protein 1258466..1259455 Photobacterium profundum SS9 3124365 YP_129349.1 CDS PBPRA1136 NC_006370.1 1259891 1262026 D methyl-accepting chemotaxis protein 1259891..1262026 Photobacterium profundum SS9 3121965 YP_129350.1 CDS PBPRA1137 NC_006370.1 1262100 1263581 R hypothetical protein complement(1262100..1263581) Photobacterium profundum SS9 3123384 YP_129351.1 CDS PBPRA1138 NC_006370.1 1263670 1265298 R hypothetical protein complement(1263670..1265298) Photobacterium profundum SS9 3123782 YP_129352.1 CDS PBPRA1139 NC_006370.1 1265549 1266688 R hypothetical protein complement(1265549..1266688) Photobacterium profundum SS9 3125003 YP_129353.1 CDS PBPRA1140 NC_006370.1 1267251 1277450 D hypothetical protein 1267251..1277450 Photobacterium profundum SS9 3125129 YP_129354.1 CDS PBPRA1141 NC_006370.1 1277549 1281046 D hypothetical protein 1277549..1281046 Photobacterium profundum SS9 3125222 YP_129355.1 CDS PBPRA1142 NC_006370.1 1281088 1281594 D hypothetical protein 1281088..1281594 Photobacterium profundum SS9 3122376 YP_129356.1 CDS PBPRA1143 NC_006370.1 1281707 1282852 R catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase; nitric oxide reductase complement(1281707..1282852) Photobacterium profundum SS9 3123970 YP_129357.1 CDS PBPRA1144 NC_006370.1 1282862 1284406 R detoxifies nitric oxide using NADH; anaerobic nitric oxide reductase flavorubredoxin complement(1282862..1284406) Photobacterium profundum SS9 3122141 YP_129358.1 CDS PBPRA1145 NC_006370.1 1284662 1286029 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(1284662..1286029) Photobacterium profundum SS9 3124082 YP_129359.1 CDS PBPRA1146 NC_006370.1 1286115 1286732 R HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein complement(1286115..1286732) Photobacterium profundum SS9 3124370 YP_129360.2 CDS mnmA NC_006370.1 1286747 1287862 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(1286747..1287862) Photobacterium profundum SS9 3124187 YP_129361.1 CDS PBPRA1148 NC_006370.1 1288206 1288856 R pseudouridine synthase complement(1288206..1288856) Photobacterium profundum SS9 3123969 YP_129362.1 CDS PBPRA1149 NC_006370.1 1288997 1290250 D Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 1288997..1290250 Photobacterium profundum SS9 3123732 YP_129363.1 CDS PBPRA1150 NC_006370.1 1291013 1291234 R cold shock-like protein CspD complement(1291013..1291234) Photobacterium profundum SS9 3123686 YP_129364.1 CDS clpS NC_006370.1 1291460 1291780 D involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 1291460..1291780 Photobacterium profundum SS9 3123830 YP_129365.1 CDS clpA NC_006370.1 1291826 1294096 D ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; ATP-dependent Clp protease ATP-binding subunit 1291826..1294096 Photobacterium profundum SS9 3124761 YP_129366.1 CDS PBPRA1153 NC_006370.1 1294259 1294477 R initiation factor IF-1 complement(1294259..1294477) Photobacterium profundum SS9 3122100 YP_129367.1 CDS PBPRA1154 NC_006370.1 1294697 1295386 R Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase complement(1294697..1295386) Photobacterium profundum SS9 3125217 YP_129368.1 CDS aat NC_006370.1 1295395 1296117 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase complement(1295395..1296117) Photobacterium profundum SS9 3125263 YP_129369.1 CDS PBPRA1156 NC_006370.1 1296188 1296646 D outer membrane lipoprotein 1296188..1296646 Photobacterium profundum SS9 3123074 YP_129370.2 CDS PBPRA1157 NC_006370.1 1296767 1298488 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding component complement(1296767..1298488) Photobacterium profundum SS9 3123389 YP_129371.1 CDS PBPRA1158 NC_006370.1 1298481 1300253 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding component complement(1298481..1300253) Photobacterium profundum SS9 3124148 YP_129372.1 CDS PBPRA1159 NC_006370.1 1300353 1301315 R thioredoxin reductase complement(1300353..1301315) Photobacterium profundum SS9 3121941 YP_129373.1 CDS PBPRA1160 NC_006370.1 1301936 1303057 R alanine dehydrogenase complement(1301936..1303057) Photobacterium profundum SS9 3124062 YP_129374.2 CDS PBPRA1161 NC_006370.1 1303215 1303709 D mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 1303215..1303709 Photobacterium profundum SS9 3122339 YP_129375.1 CDS PBPRA1162 NC_006370.1 1304187 1307450 D DNA translocase FtsK 1304187..1307450 Photobacterium profundum SS9 3124844 YP_129376.1 CDS lolA NC_006370.1 1307528 1308130 D participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 1307528..1308130 Photobacterium profundum SS9 3123791 YP_129377.1 CDS PBPRA1164 NC_006370.1 1308251 1309591 D recombination factor protein RarA 1308251..1309591 Photobacterium profundum SS9 3123555 YP_129378.1 CDS PBPRA1165 NC_006370.1 1309717 1311009 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1309717..1311009 Photobacterium profundum SS9 3124937 YP_129379.1 CDS PBPRA1166 NC_006370.1 1311089 1311955 R hypothetical protein complement(1311089..1311955) Photobacterium profundum SS9 3123296 YP_129380.1 CDS PBPRA1167 NC_006370.1 1312201 1313514 R proton/glutamate symporter complement(1312201..1313514) Photobacterium profundum SS9 3123063 YP_129381.1 CDS metG NC_006370.1 1314092 1316134 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(1314092..1316134) Photobacterium profundum SS9 3123543 YP_129382.1 CDS PBPRA1169 NC_006370.1 1316413 1317489 D ATP-binding protein 1316413..1317489 Photobacterium profundum SS9 3124290 YP_129383.1 CDS PBPRA1170 NC_006370.1 1317551 1318297 D functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 1317551..1318297 Photobacterium profundum SS9 3125421 YP_129384.1 CDS PBPRA1171 NC_006370.1 1318597 1319076 R hypothetical protein complement(1318597..1319076) Photobacterium profundum SS9 3123672 YP_129385.1 CDS PBPRA1172 NC_006370.1 1319667 1321436 D AsmA protein 1319667..1321436 Photobacterium profundum SS9 3123568 YP_129386.1 CDS PBPRA1173 NC_006370.1 1321481 1321813 D AsmA family protein 1321481..1321813 Photobacterium profundum SS9 3123465 YP_129387.1 CDS PBPRA1174 NC_006370.1 1322085 1323011 D hypothetical protein 1322085..1323011 Photobacterium profundum SS9 3123443 YP_129388.1 CDS PBPRA1175 NC_006370.1 1323093 1323551 R hypothetical protein complement(1323093..1323551) Photobacterium profundum SS9 3124067 YP_129389.1 CDS PBPRA1176 NC_006370.1 1323757 1324080 R hypothetical protein complement(1323757..1324080) Photobacterium profundum SS9 3124723 YP_129390.1 CDS PBPRA1177 NC_006370.1 1324349 1325389 D hypothetical protein 1324349..1325389 Photobacterium profundum SS9 3123767 YP_129391.1 CDS PBPRA1178 NC_006370.1 1325752 1327077 D functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter 1325752..1327077 Photobacterium profundum SS9 3124119 YP_129392.1 CDS PBPRA1179 NC_006370.1 1327187 1327621 R hypothetical protein complement(1327187..1327621) Photobacterium profundum SS9 3123435 YP_129393.1 CDS PBPRA1180 NC_006370.1 1328060 1328665 R catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase complement(1328060..1328665) Photobacterium profundum SS9 3123922 YP_129394.1 CDS cobS NC_006370.1 1328702 1329538 R catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase complement(1328702..1329538) Photobacterium profundum SS9 3123218 YP_129395.1 CDS cobT NC_006370.1 1329535 1330563 R catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(1329535..1330563) Photobacterium profundum SS9 3122997 YP_129396.1 CDS PBPRA1183 NC_006370.1 1330905 1331489 D hypothetical protein 1330905..1331489 Photobacterium profundum SS9 3124064 YP_129397.1 CDS PBPRA1184 NC_006370.1 1331682 1332167 D phosphotyrosine protein phosphatase 1331682..1332167 Photobacterium profundum SS9 3124005 YP_129398.1 CDS PBPRA1185 NC_006370.1 1332310 1333869 R sulfate permease family protein complement(1332310..1333869) Photobacterium profundum SS9 3122907 YP_129399.1 CDS PBPRA1186 NC_006370.1 1334103 1337405 R ribonuclease E complement(1334103..1337405) Photobacterium profundum SS9 3123520 YP_129400.1 CDS PBPRA1187 NC_006370.1 1337865 1338788 D 23S rRNA ribosomal pseudouridinesynthase 1337865..1338788 Photobacterium profundum SS9 3122704 YP_129401.1 CDS PBPRA1188 NC_006370.1 1338856 1339521 D hydrolase haloacid dehalogenase-likefamily 1338856..1339521 Photobacterium profundum SS9 3123772 YP_129402.1 CDS PBPRA1189 NC_006370.1 1339655 1340266 R Maf-like protein complement(1339655..1340266) Photobacterium profundum SS9 3124089 YP_129403.1 CDS PBPRA1190 NC_006370.1 1340601 1341116 D hypothetical protein 1340601..1341116 Photobacterium profundum SS9 3122859 YP_129404.1 CDS rpmF NC_006370.1 1341142 1341312 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1341142..1341312 Photobacterium profundum SS9 3124161 YP_129405.1 CDS PBPRA1192 NC_006370.1 1341322 1342347 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 1341322..1342347 Photobacterium profundum SS9 3124141 YP_129406.1 CDS PBPRA1193 NC_006370.1 1342353 1343309 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1342353..1343309 Photobacterium profundum SS9 3124331 YP_129407.1 CDS PBPRA1194 NC_006370.1 1343461 1344384 D ACP S-malonyltransferase 1343461..1344384 Photobacterium profundum SS9 3124271 YP_129408.1 CDS fabG NC_006370.1 1344408 1345142 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1344408..1345142 Photobacterium profundum SS9 3124300 YP_129409.1 CDS acpP NC_006370.1 1345302 1345538 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1345302..1345538 Photobacterium profundum SS9 3124440 YP_129410.1 CDS PBPRA1197 NC_006370.1 1345623 1346864 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 1345623..1346864 Photobacterium profundum SS9 3124686 YP_129411.1 CDS PBPRA1198 NC_006370.1 1346997 1347806 D catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 1346997..1347806 Photobacterium profundum SS9 3124741 YP_129412.1 CDS PBPRA1199 NC_006370.1 1347800 1348813 D hypothetical protein 1347800..1348813 Photobacterium profundum SS9 3123054 YP_129413.1 CDS tmk NC_006370.1 1348813 1349442 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1348813..1349442 Photobacterium profundum SS9 3124240 YP_129414.1 CDS PBPRA1201 NC_006370.1 1349505 1350419 D DNA polymerase III subunit delta' 1349505..1350419 Photobacterium profundum SS9 3124504 YP_129415.1 CDS PBPRA1202 NC_006370.1 1350394 1351185 D deoxyribonuclease 1350394..1351185 Photobacterium profundum SS9 3124299 YP_129416.1 CDS PBPRA1203 NC_006370.1 1351645 1353078 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucose-specific transporter subunits IIBC 1351645..1353078 Photobacterium profundum SS9 3125408 YP_129417.1 CDS PBPRA1204 NC_006370.1 1353298 1354203 R hypothetical protein complement(1353298..1354203) Photobacterium profundum SS9 3124431 YP_129418.1 CDS PBPRA1205 NC_006370.1 1354616 1355539 R hypothetical protein complement(1354616..1355539) Photobacterium profundum SS9 3124242 YP_129419.1 CDS PBPRA1206 NC_006370.1 1355680 1356264 R hypothetical protein complement(1355680..1356264) Photobacterium profundum SS9 3124285 YP_129420.1 CDS PBPRA1207 NC_006370.1 1356556 1357143 D hypothetical protein 1356556..1357143 Photobacterium profundum SS9 3124143 YP_129421.1 CDS PBPRA1208 NC_006370.1 1357241 1358155 D regulates the synthesis and expression of the dsdXA operon and dadA gene; DNA-binding transcriptional regulator DsdC 1357241..1358155 Photobacterium profundum SS9 3124024 YP_129422.1 CDS PBPRA1209 NC_006370.1 1358290 1358832 R hypothetical protein complement(1358290..1358832) Photobacterium profundum SS9 3124072 YP_129423.1 CDS PBPRA1210 NC_006370.1 1359195 1360220 R Catalyzes the reduction of sulfopyruvate to (R)-sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate, alpha-ketoglutarate, and to a much lower extent, KHTCA, but not pyruvate. Involved in the biosynthes; D-lactate dehydrogenase complement(1359195..1360220) Photobacterium profundum SS9 3124002 YP_129424.1 CDS PBPRA1211 NC_006370.1 1360315 1360815 R response regulator complement(1360315..1360815) Photobacterium profundum SS9 3123620 YP_129425.1 CDS PBPRA1212 NC_006370.1 1360826 1362760 R response regulator complement(1360826..1362760) Photobacterium profundum SS9 3123590 YP_129426.1 CDS PBPRA1213 NC_006370.1 1362937 1364247 D hypothetical protein 1362937..1364247 Photobacterium profundum SS9 3123750 YP_129427.1 CDS PBPRA1214 NC_006370.1 1364551 1364940 D inosine monophosphate dehydrogenase-related protein 1364551..1364940 Photobacterium profundum SS9 3123775 YP_129428.1 CDS PBPRA1215 NC_006370.1 1365220 1366569 D MATE efflux family protein 1365220..1366569 Photobacterium profundum SS9 3123076 YP_129429.1 CDS PBPRA1216 NC_006370.1 1367359 1368774 D transporter 1367359..1368774 Photobacterium profundum SS9 3123065 YP_129430.1 CDS PBPRA1217 NC_006370.1 1368798 1370123 D sensor histidine kinase 1368798..1370123 Photobacterium profundum SS9 3123096 YP_129431.1 CDS PBPRA1218 NC_006370.1 1370077 1370607 D chemotaxis protein CheY 1370077..1370607 Photobacterium profundum SS9 3123026 YP_129432.1 CDS PBPRA1219 NC_006370.1 1370658 1372223 R hypothetical protein complement(1370658..1372223) Photobacterium profundum SS9 3123718 YP_129433.1 CDS zntA NC_006370.1 1372544 1374949 D P-type ATPase involved in the export of lead, cadmium, zinc and mercury; zinc/cadmium/mercury/lead-transporting ATPase 1372544..1374949 Photobacterium profundum SS9 3123181 YP_129434.1 CDS PBPRA1221 NC_006370.1 1375343 1376110 D catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 1375343..1376110 Photobacterium profundum SS9 3122276 YP_129435.1 CDS PBPRA1222 NC_006370.1 1376302 1377474 R hypothetical protein complement(1376302..1377474) Photobacterium profundum SS9 3123451 YP_129436.1 CDS treR NC_006370.1 1377978 1378928 D regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon; trehalose repressor 1377978..1378928 Photobacterium profundum SS9 3123863 YP_129437.1 CDS PBPRA1224 NC_006370.1 1379158 1380600 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system trehalose(maltose)-specific transporter subunits IIBC 1379158..1380600 Photobacterium profundum SS9 3123391 YP_129438.1 CDS PBPRA1225 NC_006370.1 1380685 1382367 D trehalose-6-phosphate hydrolase 1380685..1382367 Photobacterium profundum SS9 3123430 YP_129439.1 CDS PBPRA1226 NC_006370.1 1382499 1383146 R hypothetical protein complement(1382499..1383146) Photobacterium profundum SS9 3123221 YP_129440.1 CDS PBPRA1227 NC_006370.1 1383718 1385898 R efflux (PET) family transporter complement(1383718..1385898) Photobacterium profundum SS9 3123109 YP_129441.1 CDS helD NC_006370.1 1386239 1388323 D catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand; DNA helicase IV 1386239..1388323 Photobacterium profundum SS9 3124156 YP_129442.1 CDS PBPRA1229 NC_006370.1 1388438 1389430 R hypothetical protein complement(1388438..1389430) Photobacterium profundum SS9 3123191 YP_129443.2 CDS mgsA NC_006370.1 1389668 1390126 R catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase complement(1389668..1390126) Photobacterium profundum SS9 3122671 YP_129444.1 CDS PBPRA1231 NC_006370.1 1390269 1391363 R periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT complement(1390269..1391363) Photobacterium profundum SS9 3125017 YP_129445.1 CDS PBPRA1232 NC_006370.1 1391445 1394396 D sensor protein TorS 1391445..1394396 Photobacterium profundum SS9 3122371 YP_129446.1 CDS PBPRA1233 NC_006370.1 1394655 1396106 D dipeptidase 1394655..1396106 Photobacterium profundum SS9 3124175 YP_129447.1 CDS PBPRA1234 NC_006370.1 1396176 1398263 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(1396176..1398263) Photobacterium profundum SS9 3122560 YP_129448.1 CDS PBPRA1235 NC_006370.1 1398737 1399594 R hypothetical protein complement(1398737..1399594) Photobacterium profundum SS9 3122500 YP_129449.1 CDS PBPRA1236 NC_006370.1 1399676 1400173 D hypothetical protein 1399676..1400173 Photobacterium profundum SS9 3124316 YP_129450.1 CDS PBPRA1237 NC_006370.1 1400216 1401124 D hypothetical protein 1400216..1401124 Photobacterium profundum SS9 3124015 YP_129451.1 CDS PBPRA1238 NC_006370.1 1401532 1401936 R transcriptional regulator complement(1401532..1401936) Photobacterium profundum SS9 3122711 YP_129452.1 CDS PBPRA1239 NC_006370.1 1402031 1402939 D oxidoreductase, aldo/keto reductase 2 1402031..1402939 Photobacterium profundum SS9 3123022 YP_129453.1 CDS PBPRA1240 NC_006370.1 1403095 1404408 R thiosulfate sulfur transferase complement(1403095..1404408) Photobacterium profundum SS9 3123395 YP_129454.1 CDS PBPRA1241 NC_006370.1 1404722 1405489 D hypothetical protein 1404722..1405489 Photobacterium profundum SS9 3124980 YP_129455.1 CDS PBPRA1242 NC_006370.1 1405479 1405697 D hypothetical protein 1405479..1405697 Photobacterium profundum SS9 3124923 YP_129456.1 CDS PBPRA1243 NC_006370.1 1406971 1408509 D hypothetical protein 1406971..1408509 Photobacterium profundum SS9 3124969 YP_129457.1 CDS PBPRA1244 NC_006370.1 1408952 1409983 R hypothetical protein complement(1408952..1409983) Photobacterium profundum SS9 3123048 YP_129458.1 CDS PBPRA1245 NC_006370.1 1410292 1410777 D hypothetical protein 1410292..1410777 Photobacterium profundum SS9 3125012 YP_129459.1 CDS PBPRA1246 NC_006370.1 1410841 1412007 D hypothetical protein 1410841..1412007 Photobacterium profundum SS9 3123598 YP_129460.1 CDS PBPRA1247 NC_006370.1 1412377 1413504 D catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 1412377..1413504 Photobacterium profundum SS9 3123724 YP_129461.1 CDS PBPRA1248 NC_006370.1 1413544 1414170 D alkylated DNA repair protein 1413544..1414170 Photobacterium profundum SS9 3122535 YP_129462.1 CDS PBPRA1249 NC_006370.1 1414640 1415779 D hypothetical protein 1414640..1415779 Photobacterium profundum SS9 3122266 YP_129463.1 CDS PBPRA1250 NC_006370.1 1415876 1416490 R hypothetical protein complement(1415876..1416490) Photobacterium profundum SS9 3123007 YP_129464.1 CDS PBPRA1251 NC_006370.1 1416453 1417235 R hypothetical protein complement(1416453..1417235) Photobacterium profundum SS9 3124817 YP_129465.1 CDS PBPRA1252 NC_006370.1 1417385 1418401 D pyruvate formate lyase-activating enzyme 1417385..1418401 Photobacterium profundum SS9 3125169 YP_129466.1 CDS PBPRA1253 NC_006370.1 1418509 1418817 D hypothetical protein 1418509..1418817 Photobacterium profundum SS9 3124885 YP_129467.1 CDS PBPRA1254 NC_006370.1 1419133 1421055 R methyl-accepting chemotaxis protein complement(1419133..1421055) Photobacterium profundum SS9 3125308 YP_129468.1 CDS PBPRA1255 NC_006370.1 1421502 1421777 R hypothetical protein complement(1421502..1421777) Photobacterium profundum SS9 3122279 YP_129469.1 CDS PBPRA1256 NC_006370.1 1422613 1423284 D hypothetical protein 1422613..1423284 Photobacterium profundum SS9 3125416 YP_129470.1 CDS PBPRA1257 NC_006370.1 1423473 1424126 D formate-dependent nitrite reductase complex, NrfG protein 1423473..1424126 Photobacterium profundum SS9 3122364 YP_129471.1 CDS nrfA NC_006370.1 1424726 1426189 R catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 complement(1424726..1426189) Photobacterium profundum SS9 3124830 YP_129472.1 CDS PBPRA1259 NC_006370.1 1426811 1427413 D part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia; cytochrome c nitrite reductase pentaheme subunit 1426811..1427413 Photobacterium profundum SS9 3122562 YP_129473.1 CDS PBPRA1260 NC_006370.1 1427425 1428117 D nitrite reductase, Fe-S protein (NrfC) 1427425..1428117 Photobacterium profundum SS9 3123008 YP_129474.1 CDS PBPRA1261 NC_006370.1 1428114 1429073 D nitrate reductase, formate dependent (NrfD) 1428114..1429073 Photobacterium profundum SS9 3125275 YP_129475.1 CDS PBPRA1262 NC_006370.1 1429232 1431280 D cytochrome c-type biogenesis protein CcmF 1429232..1431280 Photobacterium profundum SS9 3122829 YP_129476.1 CDS PBPRA1263 NC_006370.1 1431288 1431818 D thiol:disulfide interchange protein DsbE 1431288..1431818 Photobacterium profundum SS9 3123789 YP_129477.1 CDS PBPRA1264 NC_006370.1 1431821 1432339 D cytochrome c-type biogenesis protein NrfF 1431821..1432339 Photobacterium profundum SS9 3124025 YP_129478.1 CDS PBPRA1265 NC_006370.1 1432565 1434670 D beta-lactamase 1432565..1434670 Photobacterium profundum SS9 3124396 YP_129479.1 CDS PBPRA1266 NC_006370.1 1434892 1435434 D peptidyl-prolyl cis-trans isomerase B 1434892..1435434 Photobacterium profundum SS9 3124547 YP_129480.1 CDS PBPRA1267 NC_006370.1 1435588 1436142 R hypothetical protein complement(1435588..1436142) Photobacterium profundum SS9 3123739 YP_129481.1 CDS PBPRA1268 NC_006370.1 1436831 1439251 R hypothetical protein complement(1436831..1439251) Photobacterium profundum SS9 3123105 YP_129482.1 CDS PBPRA1269 NC_006370.1 1439575 1440573 D transposase 1439575..1440573 Photobacterium profundum SS9 3125019 YP_129483.1 CDS PBPRA1270 NC_006370.1 1440774 1442048 R hypothetical protein complement(1440774..1442048) Photobacterium profundum SS9 3124439 YP_129484.1 CDS PBPRA1271 NC_006370.1 1442138 1443085 D RpiR family transcriptional regulator 1442138..1443085 Photobacterium profundum SS9 3123586 YP_129485.1 CDS PBPRA1272 NC_006370.1 1443161 1444600 D N-acyl-D-aspartate/D-glutamate deacylase 1443161..1444600 Photobacterium profundum SS9 3123704 YP_129486.1 CDS PBPRA1273 NC_006370.1 1444721 1445113 D YjgF family translation initiation inhibitor 1444721..1445113 Photobacterium profundum SS9 3123251 YP_129487.1 CDS PBPRA1274 NC_006370.1 1445422 1446912 D Na+/proline symporter 1445422..1446912 Photobacterium profundum SS9 3124986 YP_129488.1 CDS PBPRA1275 NC_006370.1 1447013 1447933 D 2-dehydro-3-deoxygluconokinase 1447013..1447933 Photobacterium profundum SS9 3125361 YP_129489.1 CDS PBPRA1276 NC_006370.1 1447947 1448579 D catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 1447947..1448579 Photobacterium profundum SS9 3122494 YP_129490.1 CDS PBPRA1277 NC_006370.1 1448696 1448941 R hypothetical protein complement(1448696..1448941) Photobacterium profundum SS9 3124873 YP_129491.1 CDS PBPRA1278 NC_006370.1 1449654 1451075 D amino acid carrier protein 1449654..1451075 Photobacterium profundum SS9 3123075 YP_129492.1 CDS PBPRA1279 NC_006370.1 1452850 1453206 D hypothetical protein 1452850..1453206 Photobacterium profundum SS9 3123607 YP_129493.1 CDS PBPRA1280 NC_006370.1 1453288 1453449 R hypothetical protein complement(1453288..1453449) Photobacterium profundum SS9 3123858 YP_129494.1 CDS PBPRA1281 NC_006370.1 1453691 1454446 D LamB/YcsF family protein 1453691..1454446 Photobacterium profundum SS9 3122267 YP_129495.1 CDS PBPRA1282 NC_006370.1 1454443 1455174 D hypothetical protein 1454443..1455174 Photobacterium profundum SS9 3123424 YP_129496.1 CDS PBPRA1283 NC_006370.1 1455156 1456109 D allophanate hydrolase subunit 2 1455156..1456109 Photobacterium profundum SS9 3123002 YP_129497.1 CDS PBPRA1284 NC_006370.1 1456138 1456710 D hypothetical protein 1456138..1456710 Photobacterium profundum SS9 3122493 YP_129498.1 CDS PBPRA1285 NC_006370.1 1456769 1457020 D hypothetical protein 1456769..1457020 Photobacterium profundum SS9 3124291 YP_129499.1 CDS PBPRA1286 NC_006370.1 1457142 1457906 R hypothetical protein complement(1457142..1457906) Photobacterium profundum SS9 3124262 YP_129500.1 CDS PBPRA1287 NC_006370.1 1458124 1459671 R long-chain-fatty acid-CoAligase complement(1458124..1459671) Photobacterium profundum SS9 3122530 YP_129501.1 CDS PBPRA1288 NC_006370.1 1460682 1461116 D hypothetical protein 1460682..1461116 Photobacterium profundum SS9 3123134 YP_129502.1 CDS PBPRA1289 NC_006370.1 1461116 1461562 D hypothetical protein 1461116..1461562 Photobacterium profundum SS9 3123303 YP_129503.1 CDS PBPRA1290 NC_006370.1 1461851 1462324 D hypothetical protein 1461851..1462324 Photobacterium profundum SS9 3122854 YP_129504.1 CDS PBPRA1291 NC_006370.1 1462408 1463184 R pirin complement(1462408..1463184) Photobacterium profundum SS9 3122688 YP_129505.1 CDS PBPRA1292 NC_006370.1 1463513 1464937 R alpha-amylase complement(1463513..1464937) Photobacterium profundum SS9 3124519 YP_129506.1 CDS PBPRA1293 NC_006370.1 1465223 1466740 D hypothetical protein 1465223..1466740 Photobacterium profundum SS9 3123175 YP_129507.1 CDS PBPRA1294 NC_006370.1 1466882 1469953 D Fe-S oxidoreductase 1466882..1469953 Photobacterium profundum SS9 3123469 YP_129508.1 CDS PBPRA1295 NC_006370.1 1470067 1470825 R porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure; aquaporin Z complement(1470067..1470825) Photobacterium profundum SS9 3124098 YP_129509.1 CDS PBPRA1296 NC_006370.1 1471194 1472102 R transcriptional regulator complement(1471194..1472102) Photobacterium profundum SS9 3123768 YP_129510.1 CDS PBPRA1297 NC_006370.1 1472257 1472958 D cation efflux system protein 1472257..1472958 Photobacterium profundum SS9 3123250 YP_129511.1 CDS PBPRA1298 NC_006370.1 1473082 1473561 R hypothetical protein complement(1473082..1473561) Photobacterium profundum SS9 3124803 YP_129512.1 CDS PBPRA1299 NC_006370.1 1473687 1473938 R CG2 omega domain-containing protein complement(1473687..1473938) Photobacterium profundum SS9 3123521 YP_129513.1 CDS PBPRA1300 NC_006370.1 1474129 1474869 D hypothetical protein 1474129..1474869 Photobacterium profundum SS9 3124133 YP_129514.1 CDS PBPRA1301 NC_006370.1 1475306 1476301 R outer membrane phospholipase A precursor complement(1475306..1476301) Photobacterium profundum SS9 3123867 YP_129515.1 CDS PBPRA1302 NC_006370.1 1476412 1478811 R hypothetical protein complement(1476412..1478811) Photobacterium profundum SS9 3123524 YP_129516.1 CDS PBPRA1303 NC_006370.1 1478816 1480051 R prophage CP-933V integrase complement(1478816..1480051) Photobacterium profundum SS9 3123295 YP_129517.1 CDS PBPRA1304 NC_006370.1 1480063 1480320 R hypothetical protein complement(1480063..1480320) Photobacterium profundum SS9 3123158 YP_129518.1 CDS PBPRA1305 NC_006370.1 1480364 1480678 R hypothetical protein complement(1480364..1480678) Photobacterium profundum SS9 3125318 YP_129519.1 CDS PBPRA1306 NC_006370.1 1480915 1481700 R hypothetical protein complement(1480915..1481700) Photobacterium profundum SS9 3123627 YP_129520.1 CDS PBPRA1307 NC_006370.1 1482132 1482461 R hypothetical protein complement(1482132..1482461) Photobacterium profundum SS9 3123719 YP_129521.1 CDS PBPRA1308 NC_006370.1 1482641 1482997 D hypothetical protein 1482641..1482997 Photobacterium profundum SS9 3124247 YP_129522.1 CDS PBPRA1309 NC_006370.1 1483004 1483882 D hypothetical protein 1483004..1483882 Photobacterium profundum SS9 3123624 YP_129523.1 CDS PBPRA1310 NC_006370.1 1483955 1485310 D bacteriophage replication protein P 1483955..1485310 Photobacterium profundum SS9 3124465 YP_129524.1 CDS PBPRA1311 NC_006370.1 1485575 1485835 D hypothetical protein 1485575..1485835 Photobacterium profundum SS9 3124767 YP_129525.1 CDS PBPRA1312 NC_006370.1 1485946 1486320 R hypothetical protein complement(1485946..1486320) Photobacterium profundum SS9 3122023 YP_129526.1 CDS PBPRA1313 NC_006370.1 1486722 1487756 R hypothetical protein complement(1486722..1487756) Photobacterium profundum SS9 3125367 YP_129527.1 CDS PBPRA1314 NC_006370.1 1487854 1488699 R hypothetical protein complement(1487854..1488699) Photobacterium profundum SS9 3123746 YP_129528.1 CDS PBPRA1315 NC_006370.1 1489240 1489482 D hypothetical protein 1489240..1489482 Photobacterium profundum SS9 3124406 YP_129529.1 CDS PBPRA1316 NC_006370.1 1489490 1490284 D hypothetical protein 1489490..1490284 Photobacterium profundum SS9 3122632 YP_129530.1 CDS PBPRA1317 NC_006370.1 1490498 1491517 D hypothetical protein 1490498..1491517 Photobacterium profundum SS9 3122004 YP_129531.1 CDS PBPRA1318 NC_006370.1 1492518 1494062 R hypotethical transposase complement(1492518..1494062) Photobacterium profundum SS9 3122106 YP_129532.1 CDS PBPRA1319 NC_006370.1 1494171 1494518 R hypothetical protein complement(1494171..1494518) Photobacterium profundum SS9 3122232 YP_129533.1 CDS PBPRA1320 NC_006370.1 1494518 1494814 R hypothetical protein complement(1494518..1494814) Photobacterium profundum SS9 3121964 YP_129534.1 CDS PBPRA1321 NC_006370.1 1494876 1495145 D hypothetical protein 1494876..1495145 Photobacterium profundum SS9 3123496 YP_129535.1 CDS PBPRA1322 NC_006370.1 1495306 1495557 D hypothetical protein 1495306..1495557 Photobacterium profundum SS9 3122378 YP_129536.1 CDS PBPRA1323 NC_006370.1 1495657 1496862 R hypothetical protein complement(1495657..1496862) Photobacterium profundum SS9 3122218 YP_129537.1 CDS PBPRA1324 NC_006370.1 1496866 1497171 R hypothetical protein complement(1496866..1497171) Photobacterium profundum SS9 3124530 YP_129538.1 CDS PBPRA1325 NC_006370.1 1497265 1498545 D hypothetical protein 1497265..1498545 Photobacterium profundum SS9 3122238 YP_129539.1 CDS PBPRA1326 NC_006370.1 1498550 1498927 R hypothetical protein complement(1498550..1498927) Photobacterium profundum SS9 3122498 YP_129540.1 CDS PBPRA1327 NC_006370.1 1499293 1499556 D hypothetical protein 1499293..1499556 Photobacterium profundum SS9 3122589 YP_129541.1 CDS PBPRA1328 NC_006370.1 1500094 1500444 D hypothetical protein 1500094..1500444 Photobacterium profundum SS9 3122350 YP_129542.1 CDS PBPRA1329 NC_006370.1 1500790 1501041 D hypothetical protein 1500790..1501041 Photobacterium profundum SS9 3122193 YP_129543.1 CDS PBPRA1330 NC_006370.1 1501082 1501642 D hypothetical protein 1501082..1501642 Photobacterium profundum SS9 3122813 YP_129544.1 CDS PBPRA1331 NC_006370.1 1501639 1502115 D hypothetical protein 1501639..1502115 Photobacterium profundum SS9 3124512 YP_129545.1 CDS PBPRA1332 NC_006370.1 1502598 1503158 D hypothetical protein 1502598..1503158 Photobacterium profundum SS9 3123762 YP_129546.1 CDS PBPRA1333 NC_006370.1 1503713 1504993 D hypothetical protein 1503713..1504993 Photobacterium profundum SS9 3124165 YP_129547.1 CDS PBPRA1334 NC_006370.1 1505088 1505711 D hypothetical protein 1505088..1505711 Photobacterium profundum SS9 3124528 YP_129548.1 CDS PBPRA1335 NC_006370.1 1505989 1507041 R IS91 family transposase complement(1505989..1507041) Photobacterium profundum SS9 3124915 YP_129549.1 CDS PBPRA1336 NC_006370.1 1507038 1507925 R integrase complement(1507038..1507925) Photobacterium profundum SS9 3122815 YP_129550.1 CDS PBPRA1337 NC_006370.1 1508327 1508803 R hypothetical protein complement(1508327..1508803) Photobacterium profundum SS9 3122079 YP_129551.1 CDS PBPRA1338 NC_006370.1 1508922 1509374 R hypothetical protein complement(1508922..1509374) Photobacterium profundum SS9 3125268 YP_129552.1 CDS PBPRA1339 NC_006370.1 1510278 1510574 D hypothetical protein 1510278..1510574 Photobacterium profundum SS9 3122021 YP_129553.1 CDS PBPRA1340 NC_006370.1 1510574 1510921 D hypothetical protein 1510574..1510921 Photobacterium profundum SS9 3125134 YP_129554.1 CDS PBPRA1341 NC_006370.1 1511042 1512574 D transposase 1511042..1512574 Photobacterium profundum SS9 3123754 YP_129555.1 CDS PBPRA1342 NC_006370.1 1512703 1512957 D hypothetical protein 1512703..1512957 Photobacterium profundum SS9 3122036 YP_129556.1 CDS PBPRA1343 NC_006370.1 1512990 1513310 D hypothetical protein 1512990..1513310 Photobacterium profundum SS9 3124315 YP_129557.1 CDS tnaA NC_006370.1 1514094 1515536 D tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; tryptophanase 1514094..1515536 Photobacterium profundum SS9 3124814 YP_129558.1 CDS PBPRA1345 NC_006370.1 1515579 1516868 D tryptophan-specific transport protein 1515579..1516868 Photobacterium profundum SS9 3125394 YP_129559.1 CDS PBPRA1346 NC_006370.1 1516880 1518019 D hypothetical protein 1516880..1518019 Photobacterium profundum SS9 3123532 YP_129560.1 CDS PBPRA1347 NC_006370.1 1518094 1519410 D hypothetical protein 1518094..1519410 Photobacterium profundum SS9 3122112 YP_129561.1 CDS PBPRA1348 NC_006370.1 1519573 1520790 D hypothetical protein 1519573..1520790 Photobacterium profundum SS9 3125118 YP_129562.1 CDS PBPRA1349 NC_006370.1 1520787 1521419 D hypothetical protein 1520787..1521419 Photobacterium profundum SS9 3124164 YP_129563.1 CDS PBPRA1350 NC_006370.1 1521565 1521933 R biphenyl-2,3-diol 1,2-dioxygenase III-like protein complement(1521565..1521933) Photobacterium profundum SS9 3123888 YP_129564.1 CDS PBPRA1351 NC_006370.1 1521960 1522205 R hypothetical protein complement(1521960..1522205) Photobacterium profundum SS9 3123012 YP_129565.1 CDS PBPRA1352 NC_006370.1 1522504 1522824 D hypothetical protein 1522504..1522824 Photobacterium profundum SS9 3124065 YP_129566.1 CDS PBPRA1353 NC_006370.1 1523060 1523425 D hypothetical protein 1523060..1523425 Photobacterium profundum SS9 3125151 YP_129567.1 CDS PBPRA1354 NC_006370.1 1523434 1525095 D hypothetical protein 1523434..1525095 Photobacterium profundum SS9 3124906 YP_129568.1 CDS PBPRA1355 NC_006370.1 1525096 1526394 D phage portal protein 1525096..1526394 Photobacterium profundum SS9 3121980 YP_129569.1 CDS PBPRA1356 NC_006370.1 1526357 1527160 D protease/scaffold protein 1526357..1527160 Photobacterium profundum SS9 3122507 YP_129570.1 CDS PBPRA1357 NC_006370.1 1527174 1528436 D hypothetical protein 1527174..1528436 Photobacterium profundum SS9 3125496 YP_129571.1 CDS PBPRA1358 NC_006370.1 1528663 1528980 D hypothetical protein 1528663..1528980 Photobacterium profundum SS9 3123669 YP_129572.1 CDS PBPRA1359 NC_006370.1 1528995 1529300 D hypothetical protein 1528995..1529300 Photobacterium profundum SS9 3125188 YP_129573.1 CDS PBPRA1360 NC_006370.1 1530440 1530790 D hypothetical protein 1530440..1530790 Photobacterium profundum SS9 3122991 YP_129574.1 CDS PBPRA1361 NC_006370.1 1531250 1531879 D homoserine/homoserine lactone efflux protein 1531250..1531879 Photobacterium profundum SS9 3125143 YP_129575.1 CDS PBPRA1362 NC_006370.1 1532346 1532816 D transposase and inactivate derivatives 1532346..1532816 Photobacterium profundum SS9 3122949 YP_129576.1 CDS PBPRA1363 NC_006370.1 1532818 1533381 D transposase 1532818..1533381 Photobacterium profundum SS9 3123052 YP_129577.1 CDS PBPRA1364 NC_006370.1 1533580 1534059 D hypothetical protein 1533580..1534059 Photobacterium profundum SS9 3123321 YP_129578.1 CDS PBPRA1365 NC_006370.1 1534156 1534443 D hypothetical protein 1534156..1534443 Photobacterium profundum SS9 3124208 YP_129579.1 CDS dcuC NC_006370.1 1534584 1535951 R responsible for the transport of C4-dicarboxylates during anaerobic growth; C4-dicarboxylate transporter DcuC complement(1534584..1535951) Photobacterium profundum SS9 3124602 YP_129580.1 CDS PBPRA1367 NC_006370.1 1536541 1537413 R LysR family transcriptional regulator complement(1536541..1537413) Photobacterium profundum SS9 3123446 YP_129581.1 CDS PBPRA1368 NC_006370.1 1537425 1538771 D multidrug resistance protein 1537425..1538771 Photobacterium profundum SS9 3125292 YP_129582.1 CDS PBPRA1369 NC_006370.1 1538794 1540734 R methyl-accepting chemotaxis protein complement(1538794..1540734) Photobacterium profundum SS9 3123402 YP_129583.1 CDS glpC NC_006370.1 1541348 1542559 R anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; sn-glycerol-3-phosphate dehydrogenase subunit C complement(1541348..1542559) Photobacterium profundum SS9 3124526 YP_129584.1 CDS PBPRA1371 NC_006370.1 1542556 1543884 R sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B complement(1542556..1543884) Photobacterium profundum SS9 3122523 YP_129585.1 CDS glpA NC_006370.1 1543881 1545581 R anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor; sn-glycerol-3-phosphate dehydrogenase subunit A complement(1543881..1545581) Photobacterium profundum SS9 3124866 YP_129586.1 CDS PBPRA1373 NC_006370.1 1545844 1546455 R hypothetical protein complement(1545844..1546455) Photobacterium profundum SS9 3124103 YP_129587.1 CDS PBPRA1374 NC_006370.1 1546569 1547606 R hypothetical protein complement(1546569..1547606) Photobacterium profundum SS9 3122393 YP_129588.1 CDS PBPRA1375 NC_006370.1 1547637 1548140 R hypothetical protein complement(1547637..1548140) Photobacterium profundum SS9 3124501 YP_129589.1 CDS PBPRA1376 NC_006370.1 1548409 1549080 D hypothetical protein 1548409..1549080 Photobacterium profundum SS9 3123847 YP_129590.1 CDS PBPRA1377 NC_006370.1 1549218 1549406 D hypothetical protein 1549218..1549406 Photobacterium profundum SS9 3123347 YP_129591.1 CDS PBPRA1378 NC_006370.1 1549496 1550407 R transcriptional activator complement(1549496..1550407) Photobacterium profundum SS9 3123313 YP_129592.1 CDS PBPRA1379 NC_006370.1 1550662 1552962 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 1550662..1552962 Photobacterium profundum SS9 3122841 YP_129593.1 CDS PBPRA1380 NC_006370.1 1553114 1553551 R heat shock protein HslJ complement(1553114..1553551) Photobacterium profundum SS9 3123475 YP_129594.1 CDS PBPRA1381 NC_006370.1 1553909 1555552 R hypothetical protein complement(1553909..1555552) Photobacterium profundum SS9 3122581 YP_129595.1 CDS PBPRA1382 NC_006370.1 1555974 1556351 R hypothetical protein complement(1555974..1556351) Photobacterium profundum SS9 3124950 YP_129596.1 CDS PBPRA1383 NC_006370.1 1556579 1556827 R hypothetical protein complement(1556579..1556827) Photobacterium profundum SS9 3123509 YP_129597.1 CDS PBPRA1384 NC_006370.1 1556911 1557624 R hypothetical protein complement(1556911..1557624) Photobacterium profundum SS9 3122602 YP_129598.1 CDS PBPRA1385 NC_006370.1 1558329 1558943 D hypothetical protein 1558329..1558943 Photobacterium profundum SS9 3125438 YP_129599.1 CDS PBPRA1386 NC_006370.1 1559021 1559494 D hypothetical protein 1559021..1559494 Photobacterium profundum SS9 3122571 YP_129600.1 CDS PBPRA1387 NC_006370.1 1560254 1561819 R hypothetical protein complement(1560254..1561819) Photobacterium profundum SS9 3123692 YP_129601.1 CDS PBPRA1388 NC_006370.1 1562150 1562881 D transposase 1562150..1562881 Photobacterium profundum SS9 3125401 YP_129602.1 CDS PBPRA1389 NC_006370.1 1563655 1563981 R hypothetical protein complement(1563655..1563981) Photobacterium profundum SS9 3125207 YP_129603.1 CDS PBPRA1390 NC_006370.1 1563983 1564483 R hypothetical protein complement(1563983..1564483) Photobacterium profundum SS9 3125140 YP_129604.1 CDS PBPRA1391 NC_006370.1 1564770 1565534 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein complement(1564770..1565534) Photobacterium profundum SS9 3125076 YP_129605.1 CDS PBPRA1392 NC_006370.1 1565538 1566428 R phosphate ABC transporter, permease protein complement(1565538..1566428) Photobacterium profundum SS9 3125509 YP_129606.1 CDS PBPRA1393 NC_006370.1 1566434 1567393 R phosphate ABC transporter, permease protein complement(1566434..1567393) Photobacterium profundum SS9 3125466 YP_129607.1 CDS PBPRA1394 NC_006370.1 1567490 1568314 R phosphate ABC transporter, periplasmicphosphate-binding protein complement(1567490..1568314) Photobacterium profundum SS9 3123285 YP_129608.1 CDS PBPRA1395 NC_006370.1 1568708 1570336 D methyl-accepting chemotaxis protein 1568708..1570336 Photobacterium profundum SS9 3125028 YP_129609.1 CDS PBPRA1396 NC_006370.1 1570554 1571453 D LysR family transcriptional regulator 1570554..1571453 Photobacterium profundum SS9 3125041 YP_129610.1 CDS PBPRA1397 NC_006370.1 1571720 1572937 D NupC family protein 1571720..1572937 Photobacterium profundum SS9 3122588 YP_129611.1 CDS PBPRA1398 NC_006370.1 1573572 1573850 D hypothetical protein 1573572..1573850 Photobacterium profundum SS9 3123145 YP_129612.1 CDS PBPRA1399 NC_006370.1 1574137 1574517 R hypothetical protein complement(1574137..1574517) Photobacterium profundum SS9 3122178 YP_129613.1 CDS PBPRA1400 NC_006370.1 1574818 1575123 R hypothetical protein complement(1574818..1575123) Photobacterium profundum SS9 3122074 YP_129614.1 CDS PBPRA1401 NC_006370.1 1575245 1576147 D LysR family transcriptional regulator 1575245..1576147 Photobacterium profundum SS9 3122220 YP_129615.1 CDS PBPRA1402 NC_006370.1 1576750 1577835 D hypothetical protein 1576750..1577835 Photobacterium profundum SS9 3122484 YP_129616.1 CDS PBPRA1403 NC_006370.1 1577902 1578468 D permease 1577902..1578468 Photobacterium profundum SS9 3124170 YP_129617.1 CDS PBPRA1404 NC_006370.1 1578465 1579844 D C4 dicarboxylate transporter permease 1578465..1579844 Photobacterium profundum SS9 3122298 YP_129618.1 CDS PBPRA1405 NC_006370.1 1579980 1580864 D hypothetical protein 1579980..1580864 Photobacterium profundum SS9 3122411 YP_129619.1 CDS PBPRA1406 NC_006370.1 1580967 1581566 D hypothetical protein 1580967..1581566 Photobacterium profundum SS9 3122043 YP_129620.1 CDS PBPRA1407 NC_006370.1 1581681 1584512 R ferredoxin complement(1581681..1584512) Photobacterium profundum SS9 3122512 YP_129621.1 CDS PBPRA1408 NC_006370.1 1584499 1585164 R hypothetical protein complement(1584499..1585164) Photobacterium profundum SS9 3124746 YP_129622.1 CDS PBPRA1409 NC_006370.1 1585161 1586621 R (Fe-S)-binding protein complement(1585161..1586621) Photobacterium profundum SS9 3122810 YP_129623.1 CDS PBPRA1410 NC_006370.1 1586623 1587375 R hypothetical protein complement(1586623..1587375) Photobacterium profundum SS9 3122702 YP_129624.1 CDS PBPRA1411 NC_006370.1 1587584 1589287 R L-lactate permease complement(1587584..1589287) Photobacterium profundum SS9 3124389 YP_129625.1 CDS PBPRA1412 NC_006370.1 1589515 1590417 D LysR family transcriptional regulator 1589515..1590417 Photobacterium profundum SS9 3123600 YP_129626.1 CDS PBPRA1413 NC_006370.1 1590452 1590772 R hypothetical protein complement(1590452..1590772) Photobacterium profundum SS9 3123641 YP_129627.1 CDS PBPRA1414 NC_006370.1 1590804 1591058 R hypothetical protein complement(1590804..1591058) Photobacterium profundum SS9 3123747 YP_129628.1 CDS PBPRA1415 NC_006370.1 1591158 1591511 D hypothetical protein 1591158..1591511 Photobacterium profundum SS9 3124038 YP_129629.1 CDS PBPRA1416 NC_006370.1 1591702 1592094 R hypothetical protein complement(1591702..1592094) Photobacterium profundum SS9 3124595 YP_129630.1 CDS PBPRA1417 NC_006370.1 1592315 1592686 R hypothetical protein complement(1592315..1592686) Photobacterium profundum SS9 3124596 YP_129631.1 CDS PBPRA1418 NC_006370.1 1592689 1592979 R hypothetical protein complement(1592689..1592979) Photobacterium profundum SS9 3124481 YP_129632.1 CDS PBPRA1419 NC_006370.1 1593008 1593385 R hypothetical protein complement(1593008..1593385) Photobacterium profundum SS9 3122705 YP_129633.1 CDS PBPRA1420 NC_006370.1 1593382 1594350 R hypothetical protein complement(1593382..1594350) Photobacterium profundum SS9 3124358 YP_129634.1 CDS PBPRA1421 NC_006370.1 1594724 1596427 R NADH oxidase complement(1594724..1596427) Photobacterium profundum SS9 3123990 YP_129635.1 CDS PBPRA1422 NC_006370.1 1596629 1597048 D hypothetical protein 1596629..1597048 Photobacterium profundum SS9 3123261 YP_129636.1 CDS PBPRA1423 NC_006370.1 1597062 1597499 D hypothetical protein 1597062..1597499 Photobacterium profundum SS9 3124727 YP_129637.1 CDS PBPRA1424 NC_006370.1 1597630 1597995 R hypothetical protein complement(1597630..1597995) Photobacterium profundum SS9 3124435 YP_129638.1 CDS PBPRA1425 NC_006370.1 1598159 1599022 R uroporphyrinogen-III methylase complement(1598159..1599022) Photobacterium profundum SS9 3124638 YP_129639.1 CDS PBPRA1426 NC_006370.1 1599067 1599888 R member of the FNT family of formate and nitrite transporters; nitrite transporter NirC complement(1599067..1599888) Photobacterium profundum SS9 3124393 YP_129640.1 CDS nirD NC_006370.1 1600019 1600345 R involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations; nitrite reductase small subunit complement(1600019..1600345) Photobacterium profundum SS9 3124614 YP_129641.1 CDS PBPRA1428 NC_006370.1 1600342 1602891 R nitrite reductase (NAD(P)H), large subunit complement(1600342..1602891) Photobacterium profundum SS9 3124346 YP_129642.1 CDS PBPRA1429 NC_006370.1 1603259 1603561 D hypothetical protein 1603259..1603561 Photobacterium profundum SS9 3124049 YP_129643.1 CDS PBPRA1430 NC_006370.1 1603824 1604570 D nicotinamide mononucleotide transporter 1603824..1604570 Photobacterium profundum SS9 3124096 YP_129644.1 CDS PBPRA1431 NC_006370.1 1604570 1605325 D uridine phosphorylase 1604570..1605325 Photobacterium profundum SS9 3124476 YP_129645.1 CDS PBPRA1432 NC_006370.1 1605574 1606254 D cyclic nucleotide binding protein 1605574..1606254 Photobacterium profundum SS9 3123911 YP_129646.1 CDS PBPRA1433 NC_006370.1 1606795 1607973 D tyrosine transporter 1606795..1607973 Photobacterium profundum SS9 3123912 YP_129647.1 CDS PBPRA1434 NC_006370.1 1608530 1609333 D Ap4A phosphorylase II 1608530..1609333 Photobacterium profundum SS9 3123923 YP_129648.1 CDS PBPRA1435 NC_006370.1 1609462 1610628 R hypothetical protein complement(1609462..1610628) Photobacterium profundum SS9 3122034 YP_129649.1 CDS PBPRA1436 NC_006370.1 1610825 1611205 R cell wall-associated hydrolase complement(1610825..1611205) Photobacterium profundum SS9 3123854 YP_129650.1 CDS PBPRA1437 NC_006370.1 1611245 1612441 R transposase complement(1611245..1612441) Photobacterium profundum SS9 3123547 YP_129651.1 CDS PBPRA1438 NC_006370.1 1613157 1614344 D hypothetical protein 1613157..1614344 Photobacterium profundum SS9 3123616 YP_129652.1 CDS PBPRA1439 NC_006370.1 1614341 1616443 D hypothetical protein 1614341..1616443 Photobacterium profundum SS9 3123808 YP_129653.1 CDS PBPRA1440 NC_006370.1 1616510 1616983 R TrmH family RNA methyltransferase complement(1616510..1616983) Photobacterium profundum SS9 3123773 YP_129654.1 CDS PBPRA1441 NC_006370.1 1617144 1617476 R hypothetical protein complement(1617144..1617476) Photobacterium profundum SS9 3123566 YP_129655.1 CDS PBPRA1442 NC_006370.1 1618002 1619501 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1618002..1619501 Photobacterium profundum SS9 3124351 YP_129656.1 CDS PBPRA1443 NC_006370.1 1619504 1620220 D catalyzes the formation of 6-phospho-D-gluconate from 6-phospho-D-glucono-1,5-lactone; 6-phosphogluconolactonase 1619504..1620220 Photobacterium profundum SS9 3123781 YP_129657.1 CDS PBPRA1444 NC_006370.1 1620181 1621680 D catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 1620181..1621680 Photobacterium profundum SS9 3123367 YP_129658.1 CDS PBPRA1445 NC_006370.1 1622096 1623769 D sodium/alanine symporter 1622096..1623769 Photobacterium profundum SS9 3123319 YP_129659.1 CDS PBPRA1446 NC_006370.1 1624077 1624562 D lactoylglutathione lyase 1624077..1624562 Photobacterium profundum SS9 3124410 YP_129660.1 CDS PBPRA1447 NC_006370.1 1624889 1625581 D hypothetical protein 1624889..1625581 Photobacterium profundum SS9 3124109 YP_129661.1 CDS PBPRA1448 NC_006370.1 1625630 1626502 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1625630..1626502 Photobacterium profundum SS9 3124874 YP_129662.1 CDS PBPRA1449 NC_006370.1 1626757 1627518 R hypothetical protein complement(1626757..1627518) Photobacterium profundum SS9 3124071 YP_129663.1 CDS PBPRA1450 NC_006370.1 1627515 1627898 R hypothetical protein complement(1627515..1627898) Photobacterium profundum SS9 3124304 YP_129664.1 CDS PBPRA1451 NC_006370.1 1628056 1628811 R hypothetical protein complement(1628056..1628811) Photobacterium profundum SS9 3124539 YP_129665.1 CDS PBPRA1452 NC_006370.1 1629086 1629478 R hypothetical protein complement(1629086..1629478) Photobacterium profundum SS9 3125525 YP_129666.1 CDS PBPRA1453 NC_006370.1 1629488 1631533 R alkaline serine protease complement(1629488..1631533) Photobacterium profundum SS9 3123457 YP_129667.1 CDS PBPRA1454 NC_006370.1 1631709 1631951 R hypothetical protein complement(1631709..1631951) Photobacterium profundum SS9 3124219 YP_129668.1 CDS PBPRA1455 NC_006370.1 1632041 1632454 D hypothetical protein 1632041..1632454 Photobacterium profundum SS9 3122408 YP_129669.1 CDS PBPRA1456 NC_006370.1 1632912 1633838 D hypothetical protein 1632912..1633838 Photobacterium profundum SS9 3124801 YP_129670.1 CDS PBPRA1457 NC_006370.1 1634245 1635879 R omega-3 polyunsaturated fatty acid synthase PfaD complement(1634245..1635879) Photobacterium profundum SS9 3123835 YP_129671.1 CDS PBPRA1458 NC_006370.1 1635898 1641918 R omega-3 polyunsaturated fatty acid synthase PfaC complement(1635898..1641918) Photobacterium profundum SS9 3123783 YP_129672.1 CDS PBPRA1459 NC_006370.1 1641771 1643846 R omega-3 polyunsaturated fatty acid synthase PfaB complement(1641771..1643846) Photobacterium profundum SS9 3123617 YP_129673.1 CDS PBPRA1460 NC_006370.1 1643870 1651615 R omega-3 polyunsaturated fatty acid synthase PfaA complement(1643870..1651615) Photobacterium profundum SS9 3123705 YP_129674.1 CDS PBPRA1461 NC_006370.1 1652677 1653096 R hypothetical protein complement(1652677..1653096) Photobacterium profundum SS9 3124003 YP_129675.1 CDS PBPRA1462 NC_006370.1 1653516 1654550 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1653516..1654550 Photobacterium profundum SS9 3122335 YP_129676.1 CDS PBPRA1463 NC_006370.1 1654662 1655573 D haloalkane dehalogenase 1654662..1655573 Photobacterium profundum SS9 3125101 YP_129677.1 CDS PBPRA1464 NC_006370.1 1655570 1657327 D Catalyzes the specific recognition and activation of amino acids during peptide synthesis; peptide synthase 1655570..1657327 Photobacterium profundum SS9 3122228 YP_129678.1 CDS PBPRA1465 NC_006370.1 1657324 1658439 D steroid dehydrogenase 1657324..1658439 Photobacterium profundum SS9 3124466 YP_129679.1 CDS PBPRA1466 NC_006370.1 1658529 1660397 R methyl-accepting chemotaxis protein complement(1658529..1660397) Photobacterium profundum SS9 3123550 YP_129680.1 CDS PBPRA1467 NC_006370.1 1660806 1663274 R trimethylamine-N-oxide reductase complement(1660806..1663274) Photobacterium profundum SS9 3121967 YP_129681.1 CDS PBPRA1468 NC_006370.1 1663292 1664470 R cytochrome c-type protein TorC complement(1663292..1664470) Photobacterium profundum SS9 3122843 YP_129682.1 CDS hemH NC_006370.1 1665306 1666409 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(1665306..1666409) Photobacterium profundum SS9 3123208 YP_129683.1 CDS PBPRA1470 NC_006370.1 1666891 1669218 D hypothetical protein 1666891..1669218 Photobacterium profundum SS9 3125246 YP_129684.1 CDS PBPRA1471 NC_006370.1 1669257 1670153 D LysR family transcriptional regulator 1669257..1670153 Photobacterium profundum SS9 3124667 YP_129685.1 CDS PBPRA1472 NC_006370.1 1670195 1671904 R hypothetical protein complement(1670195..1671904) Photobacterium profundum SS9 3124610 YP_129686.1 CDS PBPRA1473 NC_006370.1 1672459 1673934 R hypothetical protein complement(1672459..1673934) Photobacterium profundum SS9 3124438 YP_129687.1 CDS PBPRA1474 NC_006370.1 1674625 1675386 R hypothetical protein complement(1674625..1675386) Photobacterium profundum SS9 3123713 YP_129688.1 CDS PBPRA1475 NC_006370.1 1675889 1676686 D hypothetical protein 1675889..1676686 Photobacterium profundum SS9 3124016 YP_129689.1 CDS PBPRA1476 NC_006370.1 1676768 1677715 D amino acid ABC transporter permease 1676768..1677715 Photobacterium profundum SS9 3122158 YP_129690.1 CDS PBPRA1477 NC_006370.1 1677708 1678460 D amino acid ABC transporter 1677708..1678460 Photobacterium profundum SS9 3122616 YP_129691.1 CDS PBPRA1478 NC_006370.1 1678579 1679451 R hypothetical protein complement(1678579..1679451) Photobacterium profundum SS9 3125064 YP_129692.1 CDS PBPRA1479 NC_006370.1 1679436 1680680 R Na(+)/H(+)-dicarboxylate symporters complement(1679436..1680680) Photobacterium profundum SS9 3124449 YP_129693.1 CDS PBPRA1480 NC_006370.1 1680863 1681993 R alcohol dehydrogenase class III complement(1680863..1681993) Photobacterium profundum SS9 3122052 YP_129694.1 CDS PBPRA1481 NC_006370.1 1682181 1683467 R uncharacterized member of the APC superfamily of amino acid transporters; unknown function; hypothetical protein complement(1682181..1683467) Photobacterium profundum SS9 3123199 YP_129695.1 CDS PBPRA1482 NC_006370.1 1683636 1684052 D AsnC family transcriptional regulator 1683636..1684052 Photobacterium profundum SS9 3123095 YP_129696.1 CDS PBPRA1483 NC_006370.1 1684353 1684631 R hypothetical protein complement(1684353..1684631) Photobacterium profundum SS9 3125534 YP_129697.1 CDS dnaK NC_006370.1 1684752 1686677 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(1684752..1686677) Photobacterium profundum SS9 3124974 YP_129698.1 CDS PBPRA1485 NC_006370.1 1686932 1687390 R 16 kDa heat shock protein A complement(1686932..1687390) Photobacterium profundum SS9 3121939 YP_129699.1 CDS PBPRA1486 NC_006370.1 1687793 1688857 R hypothetical protein complement(1687793..1688857) Photobacterium profundum SS9 3123881 YP_129700.1 CDS PBPRA1487 NC_006370.1 1688954 1689232 D hypothetical protein 1688954..1689232 Photobacterium profundum SS9 3123936 YP_129701.1 CDS PBPRA1488 NC_006370.1 1689237 1689968 R transposase complement(1689237..1689968) Photobacterium profundum SS9 3124460 YP_129702.1 CDS PBPRA1489 NC_006370.1 1690205 1690513 R hypothetical protein complement(1690205..1690513) Photobacterium profundum SS9 3124345 YP_129703.1 CDS PBPRA1490 NC_006370.1 1690787 1691863 D hypothetical protein 1690787..1691863 Photobacterium profundum SS9 3124305 YP_129704.1 CDS PBPRA1491 NC_006370.1 1692041 1692289 R hypothetical protein complement(1692041..1692289) Photobacterium profundum SS9 3124821 YP_129705.1 CDS PBPRA1492 NC_006370.1 1692698 1693087 D hypothetical protein 1692698..1693087 Photobacterium profundum SS9 3124453 YP_129706.1 CDS PBPRA1493 NC_006370.1 1693224 1693781 R hypothetical protein complement(1693224..1693781) Photobacterium profundum SS9 3123737 YP_129707.1 CDS torD NC_006370.1 1693983 1694633 R TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD complement(1693983..1694633) Photobacterium profundum SS9 3124317 YP_129708.1 CDS PBPRA1495 NC_006370.1 1694883 1697414 R trimethylamine-N-oxide reductase 1 precursor complement(1694883..1697414) Photobacterium profundum SS9 3122713 YP_129709.1 CDS PBPRA1496 NC_006370.1 1697484 1698650 R hypotetical trimethylamine N-oxide reductase,cytochrome c-type subunit complement(1697484..1698650) Photobacterium profundum SS9 3122923 YP_129710.1 CDS PBPRA1497 NC_006370.1 1698851 1699564 D response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR 1698851..1699564 Photobacterium profundum SS9 3123262 YP_129711.1 CDS PBPRA1498 NC_006370.1 1700030 1701679 R glutamate decarboxylase complement(1700030..1701679) Photobacterium profundum SS9 3122054 YP_129712.1 CDS PBPRA1499 NC_006370.1 1701843 1702823 R periplasmic protein complement(1701843..1702823) Photobacterium profundum SS9 3124405 YP_129713.1 CDS PBPRA1500 NC_006370.1 1703198 1703710 R hypothetical protein complement(1703198..1703710) Photobacterium profundum SS9 3122072 YP_129714.1 CDS PBPRA1501 NC_006370.1 1704040 1704411 D hypothetical protein 1704040..1704411 Photobacterium profundum SS9 3122953 YP_129715.1 CDS PBPRA1502 NC_006370.1 1704552 1705013 R hypothetical protein complement(1704552..1705013) Photobacterium profundum SS9 3122695 YP_129716.1 CDS PBPRA1503 NC_006370.1 1705166 1705855 R hypothetical protein complement(1705166..1705855) Photobacterium profundum SS9 3122878 YP_129717.1 CDS PBPRA1504 NC_006370.1 1706054 1707058 R hypothetical protein complement(1706054..1707058) Photobacterium profundum SS9 3124790 YP_129718.1 CDS PBPRA1505 NC_006370.1 1707628 1707912 D DNA-damage-inducible protein J 1707628..1707912 Photobacterium profundum SS9 3124824 YP_129719.1 CDS PBPRA1506 NC_006370.1 1707909 1708187 D hypothetical protein 1707909..1708187 Photobacterium profundum SS9 3125239 YP_129720.1 CDS PBPRA1507 NC_006370.1 1708331 1708642 R hypothetical protein complement(1708331..1708642) Photobacterium profundum SS9 3124303 YP_129721.1 CDS PBPRA1508 NC_006370.1 1708657 1709028 R hypothetical protein complement(1708657..1709028) Photobacterium profundum SS9 3124330 YP_129722.1 CDS PBPRA1509 NC_006370.1 1709030 1709752 R hypothetical protein complement(1709030..1709752) Photobacterium profundum SS9 3122317 YP_129723.1 CDS PBPRA1510 NC_006370.1 1710345 1711832 R sodium-dependent transporter complement(1710345..1711832) Photobacterium profundum SS9 3122076 YP_129724.1 CDS PBPRA1511 NC_006370.1 1712217 1712816 R hypothetical protein complement(1712217..1712816) Photobacterium profundum SS9 3124691 YP_129725.1 CDS PBPRA1512 NC_006370.1 1713322 1714485 D alpha/beta hydrolase 1713322..1714485 Photobacterium profundum SS9 3124093 YP_129726.1 CDS PBPRA1513 NC_006370.1 1714574 1715584 R catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase complement(1714574..1715584) Photobacterium profundum SS9 3124524 YP_129727.1 CDS PBPRA1514 NC_006370.1 1715729 1716886 R hypothetical protein complement(1715729..1716886) Photobacterium profundum SS9 3123845 YP_129728.1 CDS PBPRA1515 NC_006370.1 1716786 1717478 R hypothetical protein complement(1716786..1717478) Photobacterium profundum SS9 3122755 YP_129729.1 CDS PBPRA1516 NC_006370.1 1717473 1717724 D hypothetical protein 1717473..1717724 Photobacterium profundum SS9 3124520 YP_129730.1 CDS PBPRA1517 NC_006370.1 1718093 1719385 D prolyl aminopeptidase 1718093..1719385 Photobacterium profundum SS9 3124555 YP_129731.1 CDS PBPRA1518 NC_006370.1 1719739 1720092 D hypothetical protein 1719739..1720092 Photobacterium profundum SS9 3124280 YP_129732.1 CDS PBPRA1519 NC_006370.1 1720465 1720875 D GTP cyclohydrolase II 1720465..1720875 Photobacterium profundum SS9 3125020 YP_129733.1 CDS PBPRA1520 NC_006370.1 1720887 1721063 D hypothetical protein 1720887..1721063 Photobacterium profundum SS9 3123868 YP_129734.1 CDS emrD NC_006370.1 1721434 1722642 D multidrug efflux protein involved in adaptation to low energy shock; multidrug resistance protein D 1721434..1722642 Photobacterium profundum SS9 3125125 YP_129735.1 CDS PBPRA1522 NC_006370.1 1722766 1723092 R highly acidic protein; the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi); binds heat-unstable protein (HU-alpha) which is a histone-like protein; dsDNA-mimic protein complement(1722766..1723092) Photobacterium profundum SS9 3122966 YP_129736.1 CDS PBPRA1523 NC_006370.1 1723227 1724774 R hypothetical protein complement(1723227..1724774) Photobacterium profundum SS9 3123315 YP_129737.1 CDS PBPRA1524 NC_006370.1 1725751 1726041 R hypothetical protein complement(1725751..1726041) Photobacterium profundum SS9 3122053 YP_129738.1 CDS PBPRA1525 NC_006370.1 1726545 1727972 R hypothetical protein complement(1726545..1727972) Photobacterium profundum SS9 3124366 YP_129739.1 CDS PBPRA1526 NC_006370.1 1728123 1728719 R hypothetical protein complement(1728123..1728719) Photobacterium profundum SS9 3122333 YP_129740.1 CDS PBPRA1527 NC_006370.1 1729069 1730538 R PTR2 family transport protein complement(1729069..1730538) Photobacterium profundum SS9 3124057 YP_129741.1 CDS PBPRA1528 NC_006370.1 1730945 1731292 D transposase 1730945..1731292 Photobacterium profundum SS9 3124215 YP_129742.1 CDS PBPRA1529 NC_006370.1 1731486 1732973 R PTR2 family transport protein complement(1731486..1732973) Photobacterium profundum SS9 3124834 YP_129743.1 CDS PBPRA1530 NC_006370.1 1733361 1734134 D hypothetical protein 1733361..1734134 Photobacterium profundum SS9 3122110 YP_129744.1 CDS PBPRA1531 NC_006370.1 1734239 1736548 D Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II 1734239..1736548 Photobacterium profundum SS9 3124562 YP_129745.1 CDS PBPRA1532 NC_006370.1 1736702 1737013 R hypothetical protein complement(1736702..1737013) Photobacterium profundum SS9 3124487 YP_129746.1 CDS PBPRA1533 NC_006370.1 1737231 1737542 D Fe-S protein 1737231..1737542 Photobacterium profundum SS9 3122679 YP_129747.2 CDS PBPRA1534 NC_006370.1 1737645 1737923 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 complement(1737645..1737923) Photobacterium profundum SS9 3124207 YP_129748.1 CDS PBPRA1535 NC_006370.1 1738246 1740393 D heme receptor 1738246..1740393 Photobacterium profundum SS9 3121944 YP_129749.1 CDS PBPRA1536 NC_006370.1 1740502 1741668 R isoaspartyl dipeptidase complement(1740502..1741668) Photobacterium profundum SS9 3124310 YP_129750.1 CDS PBPRA1537 NC_006370.1 1742327 1743520 D methylamine metabolism protein 1742327..1743520 Photobacterium profundum SS9 3122746 YP_129751.1 CDS PBPRA1538 NC_006370.1 1743512 1744579 R hypothetical protein complement(1743512..1744579) Photobacterium profundum SS9 3123799 YP_129752.1 CDS PBPRA1539 NC_006370.1 1744989 1746770 R ATP-dependent helicase complement(1744989..1746770) Photobacterium profundum SS9 3124361 YP_129753.1 CDS PBPRA1540 NC_006370.1 1747057 1748124 D heavy metal membrane efflux protein 1747057..1748124 Photobacterium profundum SS9 3122722 YP_129754.1 CDS PBPRA1541 NC_006370.1 1748135 1748509 D repressor protein 1748135..1748509 Photobacterium profundum SS9 3123939 YP_129755.1 CDS PBPRA1542 NC_006370.1 1748526 1750298 D arsenical pump-driving ATPase(arsenite-translocating ATPase) 1748526..1750298 Photobacterium profundum SS9 3121984 YP_129756.1 CDS PBPRA1543 NC_006370.1 1750421 1750915 R hypothetical protein complement(1750421..1750915) Photobacterium profundum SS9 3123154 YP_129757.1 CDS PBPRA1544 NC_006370.1 1751224 1751922 D hypothetical protein 1751224..1751922 Photobacterium profundum SS9 3123549 YP_129758.1 CDS PBPRA1545 NC_006370.1 1752176 1753390 D Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; bicyclomycin/multidrug efflux system 1752176..1753390 Photobacterium profundum SS9 3122056 YP_129759.1 CDS PBPRA1546 NC_006370.1 1753484 1754143 D hypothetical protein 1753484..1754143 Photobacterium profundum SS9 3122215 YP_129760.1 CDS PBPRA1547 NC_006370.1 1754519 1755067 R hypothetical protein complement(1754519..1755067) Photobacterium profundum SS9 3122862 YP_129761.1 CDS PBPRA1548 NC_006370.1 1755558 1756148 D hypothetical protein 1755558..1756148 Photobacterium profundum SS9 3122768 YP_129762.1 CDS PBPRA1549 NC_006370.1 1756242 1756895 D hypothetical protein 1756242..1756895 Photobacterium profundum SS9 3125516 YP_129763.1 CDS PBPRA1550 NC_006370.1 1757233 1758825 D glycine betaine transporter 1757233..1758825 Photobacterium profundum SS9 3125039 YP_129764.1 CDS PBPRA1551 NC_006370.1 1759026 1760495 R nucleoside-diphosphate-sugar epimerase complement(1759026..1760495) Photobacterium profundum SS9 3123679 YP_129765.1 CDS PBPRA1552 NC_006370.1 1760716 1762083 D hypothetical protein 1760716..1762083 Photobacterium profundum SS9 3123484 YP_129766.1 CDS PBPRA1553 NC_006370.1 1762362 1763039 D ABC transporter, ATP-binding protein 1762362..1763039 Photobacterium profundum SS9 3123297 YP_129767.1 CDS PBPRA1554 NC_006370.1 1763020 1765479 D hypothetical protein 1763020..1765479 Photobacterium profundum SS9 3124804 YP_129768.1 CDS PBPRA1555 NC_006370.1 1765479 1766570 D hydrolase 1765479..1766570 Photobacterium profundum SS9 3122881 YP_129769.1 CDS PBPRA1556 NC_006370.1 1766605 1767900 D hydrolase 1766605..1767900 Photobacterium profundum SS9 3122857 YP_129770.1 CDS PBPRA1557 NC_006370.1 1768265 1770559 D hypothetical protein 1768265..1770559 Photobacterium profundum SS9 3124989 YP_129771.1 CDS PBPRA1558 NC_006370.1 1770676 1772229 D outer membrane protein 1770676..1772229 Photobacterium profundum SS9 3125471 YP_129772.1 CDS PBPRA1559 NC_006370.1 1772229 1772438 D hypothetical protein 1772229..1772438 Photobacterium profundum SS9 3124701 YP_129773.1 CDS PBPRA1560 NC_006370.1 1772441 1773337 D hypothetical protein 1772441..1773337 Photobacterium profundum SS9 3124680 YP_129774.1 CDS PBPRA1561 NC_006370.1 1773482 1774093 D hypothetical protein 1773482..1774093 Photobacterium profundum SS9 3123841 YP_129775.1 CDS PBPRA1562 NC_006370.1 1774095 1775216 D hypothetical protein 1774095..1775216 Photobacterium profundum SS9 3123344 YP_129776.1 CDS PBPRA1563 NC_006370.1 1775337 1777385 R part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron-hydroxamate transporter permease subunit complement(1775337..1777385) Photobacterium profundum SS9 3124732 YP_129777.1 CDS PBPRA1564 NC_006370.1 1777591 1778259 R iron(III) ABC transporter, periplasmic iron-compound-binding protein complement(1777591..1778259) Photobacterium profundum SS9 3124856 YP_129778.1 CDS PBPRA1565 NC_006370.1 1778250 1779035 R iron(III) ABC transporter, ATP-binding protein complement(1778250..1779035) Photobacterium profundum SS9 3124032 YP_129779.1 CDS PBPRA1566 NC_006370.1 1779120 1781219 R iron(III) compound receptor complement(1779120..1781219) Photobacterium profundum SS9 3124073 YP_129780.1 CDS PBPRA1567 NC_006370.1 1781766 1783478 D hemolysin secretion ATP-binding protein 1781766..1783478 Photobacterium profundum SS9 3122590 YP_129781.1 CDS PBPRA1568 NC_006370.1 1783748 1785313 R hypothetical protein complement(1783748..1785313) Photobacterium profundum SS9 3125487 YP_129782.1 CDS PBPRA1569 NC_006370.1 1785501 1786499 R hypothetical protein complement(1785501..1786499) Photobacterium profundum SS9 3122790 YP_129783.1 CDS PBPRA1570 NC_006370.1 1786883 1787827 D hypothetical protein 1786883..1787827 Photobacterium profundum SS9 3124179 YP_129784.1 CDS PBPRA1571 NC_006370.1 1788071 1789684 D hypothetical protein 1788071..1789684 Photobacterium profundum SS9 3125042 YP_129785.1 CDS PBPRA1572 NC_006370.1 1789749 1790732 R binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR complement(1789749..1790732) Photobacterium profundum SS9 3122983 YP_129786.1 CDS PBPRA1573 NC_006370.1 1791073 1792191 D phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr; bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein 1791073..1792191 Photobacterium profundum SS9 3122274 YP_129787.1 CDS PBPRA1574 NC_006370.1 1792194 1793222 D 1-phosphofructokinase 1792194..1793222 Photobacterium profundum SS9 3122579 YP_129788.1 CDS PBPRA1575 NC_006370.1 1793244 1794983 D PTS system, fructose-specific IIBC component 1793244..1794983 Photobacterium profundum SS9 3122265 YP_129789.1 CDS PBPRA1576 NC_006370.1 1795432 1795827 D hypothetical protein 1795432..1795827 Photobacterium profundum SS9 3122139 YP_129790.1 CDS PBPRA1577 NC_006370.1 1795931 1797337 R arginine/ornithine antiporter complement(1795931..1797337) Photobacterium profundum SS9 3124197 YP_129791.1 CDS PBPRA1578 NC_006370.1 1797538 1798008 R SOS-response cell division inhibitor complement(1797538..1798008) Photobacterium profundum SS9 3124900 YP_129792.1 CDS PBPRA1579 NC_006370.1 1799171 1800142 D hypothetical protein 1799171..1800142 Photobacterium profundum SS9 3123013 YP_129793.1 CDS PBPRA1580 NC_006370.1 1800147 1801343 R transposase complement(1800147..1801343) Photobacterium profundum SS9 3125050 YP_129794.1 CDS PBPRA1581 NC_006370.1 1801879 1803159 D transposase 1801879..1803159 Photobacterium profundum SS9 3122020 YP_129795.1 CDS PBPRA1582 NC_006370.1 1803275 1803583 D hypothetical protein 1803275..1803583 Photobacterium profundum SS9 3125160 YP_129796.1 CDS PBPRA1583 NC_006370.1 1803580 1805532 D hypothetical protein 1803580..1805532 Photobacterium profundum SS9 3124926 YP_129797.1 CDS PBPRA1584 NC_006370.1 1805869 1810845 D hypothetical protein 1805869..1810845 Photobacterium profundum SS9 3122369 YP_129798.1 CDS PBPRA1585 NC_006370.1 1810842 1812263 D hypothetical protein 1810842..1812263 Photobacterium profundum SS9 3121999 YP_129799.1 CDS PBPRA1586 NC_006370.1 1812820 1813113 D hypothetical protein 1812820..1813113 Photobacterium profundum SS9 3122730 YP_129800.1 CDS PBPRA1587 NC_006370.1 1813282 1814142 D transposase 1813282..1814142 Photobacterium profundum SS9 3122630 YP_129801.1 CDS PBPRA1588 NC_006370.1 1814474 1814764 D transposase 1814474..1814764 Photobacterium profundum SS9 3123236 YP_129802.1 CDS PBPRA1589 NC_006370.1 1814800 1815354 D hypothetical protein 1814800..1815354 Photobacterium profundum SS9 3122132 YP_129803.1 CDS PBPRA1590 NC_006370.1 1815598 1817142 R hypotethical transposase complement(1815598..1817142) Photobacterium profundum SS9 3123811 YP_129804.1 CDS PBPRA1591 NC_006370.1 1817251 1817598 R hypothetical protein complement(1817251..1817598) Photobacterium profundum SS9 3124421 YP_129805.1 CDS PBPRA1592 NC_006370.1 1817598 1817894 R hypothetical protein complement(1817598..1817894) Photobacterium profundum SS9 3125254 YP_129806.1 CDS PBPRA1593 NC_006370.1 1818063 1823024 D hypothetical protein 1818063..1823024 Photobacterium profundum SS9 3124117 YP_129807.1 CDS PBPRA1594 NC_006370.1 1823024 1824574 D hypothetical protein 1823024..1824574 Photobacterium profundum SS9 3125320 YP_129808.1 CDS PBPRA1595 NC_006370.1 1825022 1825639 D hypothetical protein 1825022..1825639 Photobacterium profundum SS9 3124056 YP_129809.1 CDS PBPRA1596 NC_006370.1 1826082 1828391 D hypothetical protein 1826082..1828391 Photobacterium profundum SS9 3124964 YP_129810.1 CDS PBPRA1597 NC_006370.1 1828517 1829713 D hypothetical protein 1828517..1829713 Photobacterium profundum SS9 3122252 YP_129811.1 CDS PBPRA1598 NC_006370.1 1829710 1831908 D ATP-dependent helicase 1829710..1831908 Photobacterium profundum SS9 3121972 YP_129812.1 CDS PBPRA1599 NC_006370.1 1832878 1833318 D hypothetical protein 1832878..1833318 Photobacterium profundum SS9 3122808 YP_129813.1 CDS PBPRA1600 NC_006370.1 1833472 1833855 R hypothetical protein complement(1833472..1833855) Photobacterium profundum SS9 3122677 YP_129814.1 CDS PBPRA1601 NC_006370.1 1833925 1834575 R hypothetical protein complement(1833925..1834575) Photobacterium profundum SS9 3123302 YP_129815.1 CDS PBPRA1602 NC_006370.1 1834604 1834849 R hypothetical protein complement(1834604..1834849) Photobacterium profundum SS9 3123884 YP_129816.1 CDS PBPRA1603 NC_006370.1 1834940 1835338 D hypothetical protein 1834940..1835338 Photobacterium profundum SS9 3124248 YP_129817.1 CDS PBPRA1604 NC_006370.1 1836067 1837497 D Fe-S oxidoreductase 1836067..1837497 Photobacterium profundum SS9 3123613 YP_129818.1 CDS PBPRA1605 NC_006370.1 1838787 1839347 R hymidylate kinase complement(1838787..1839347) Photobacterium profundum SS9 3125349 YP_129819.1 CDS PBPRA1606 NC_006370.1 1839409 1839705 D hypothetical protein 1839409..1839705 Photobacterium profundum SS9 3122826 YP_129820.1 CDS PBPRA1607 NC_006370.1 1839705 1840052 D hypothetical protein 1839705..1840052 Photobacterium profundum SS9 3124910 YP_129821.1 CDS PBPRA1608 NC_006370.1 1840174 1841706 D transposase 1840174..1841706 Photobacterium profundum SS9 3122876 YP_129822.1 CDS PBPRA1609 NC_006370.1 1842231 1842515 R hypothetical protein complement(1842231..1842515) Photobacterium profundum SS9 3123028 YP_129823.1 CDS PBPRA1610 NC_006370.1 1842755 1843621 R hypothetical protein complement(1842755..1843621) Photobacterium profundum SS9 3122875 YP_129824.1 CDS PBPRA1611 NC_006370.1 1843770 1844474 R hypothetical protein complement(1843770..1844474) Photobacterium profundum SS9 3122840 YP_129825.1 CDS PBPRA1612 NC_006370.1 1844465 1844809 R hypothetical protein complement(1844465..1844809) Photobacterium profundum SS9 3124807 YP_129826.1 CDS PBPRA1613 NC_006370.1 1844806 1845300 R hypothetical protein complement(1844806..1845300) Photobacterium profundum SS9 3123805 YP_129827.1 CDS PBPRA1614 NC_006370.1 1845610 1846431 R hypothetical protein complement(1845610..1846431) Photobacterium profundum SS9 3123906 YP_129828.1 CDS PBPRA1615 NC_006370.1 1846887 1847345 D hypothetical protein 1846887..1847345 Photobacterium profundum SS9 3123167 YP_129829.1 CDS PBPRA1616 NC_006370.1 1847490 1847921 D hypothetical protein 1847490..1847921 Photobacterium profundum SS9 3125428 YP_129830.1 CDS PBPRA1617 NC_006370.1 1848095 1850014 R flagellin complement(1848095..1850014) Photobacterium profundum SS9 3125299 YP_129831.1 CDS PBPRA1618 NC_006370.1 1850047 1850292 D hypothetical protein 1850047..1850292 Photobacterium profundum SS9 3125420 YP_129832.1 CDS PBPRA1619 NC_006370.1 1850541 1851158 D hypothetical protein 1850541..1851158 Photobacterium profundum SS9 3122819 YP_129833.1 CDS PBPRA1620 NC_006370.1 1851155 1851715 D hypothetical protein 1851155..1851715 Photobacterium profundum SS9 3122612 YP_129834.1 CDS PBPRA1621 NC_006370.1 1851715 1853085 D hypothetical protein 1851715..1853085 Photobacterium profundum SS9 3122342 YP_129835.1 CDS PBPRA1622 NC_006370.1 1853091 1854014 D hypothetical protein 1853091..1854014 Photobacterium profundum SS9 3123409 YP_129836.1 CDS PBPRA1623 NC_006370.1 1854011 1855744 D hypothetical protein 1854011..1855744 Photobacterium profundum SS9 3123510 YP_129837.1 CDS PBPRA1624 NC_006370.1 1856739 1857269 D hypothetical protein 1856739..1857269 Photobacterium profundum SS9 3123085 YP_129838.1 CDS PBPRA1625 NC_006370.1 1857534 1858370 R reverse transcriptase/maturase family protein complement(1857534..1858370) Photobacterium profundum SS9 3123059 YP_129839.1 CDS PBPRA1626 NC_006370.1 1858530 1859297 D transposase 1858530..1859297 Photobacterium profundum SS9 3124707 YP_129840.1 CDS PBPRA1627 NC_006370.1 1859285 1860481 R hypothetical protein complement(1859285..1860481) Photobacterium profundum SS9 3123779 YP_129841.1 CDS PBPRA1628 NC_006370.1 1860777 1861064 D hypothetical protein 1860777..1861064 Photobacterium profundum SS9 3122489 YP_129842.1 CDS PBPRA1629 NC_006370.1 1861197 1861826 R recombinase complement(1861197..1861826) Photobacterium profundum SS9 3122225 YP_129843.1 CDS PBPRA1630 NC_006370.1 1862317 1862664 D transposase 1862317..1862664 Photobacterium profundum SS9 3122185 YP_129844.1 CDS PBPRA1631 NC_006370.1 1862896 1863465 D acyltransferase 1862896..1863465 Photobacterium profundum SS9 3124323 YP_129845.1 CDS PBPRA1632 NC_006370.1 1863755 1864084 D hypothetical protein 1863755..1864084 Photobacterium profundum SS9 3125280 YP_129846.1 CDS PBPRA1633 NC_006370.1 1864204 1864557 D hypothetical protein 1864204..1864557 Photobacterium profundum SS9 3125490 YP_129847.1 CDS PBPRA1634 NC_006370.1 1864622 1865128 D hypothetical protein 1864622..1865128 Photobacterium profundum SS9 3123825 YP_129848.1 CDS PBPRA1635 NC_006370.1 1865300 1865719 R transposase complement(1865300..1865719) Photobacterium profundum SS9 3123680 YP_129849.1 CDS PBPRA1636 NC_006370.1 1866098 1866811 D hypothetical protein 1866098..1866811 Photobacterium profundum SS9 3123717 YP_129850.1 CDS PBPRA1637 NC_006370.1 1867376 1868572 R transposase complement(1867376..1868572) Photobacterium profundum SS9 3123371 YP_129851.1 CDS PBPRA1638 NC_006370.1 1869164 1869730 D hypothetical protein 1869164..1869730 Photobacterium profundum SS9 3124862 YP_129852.1 CDS PBPRA1639 NC_006370.1 1869865 1870119 D hypothetical protein 1869865..1870119 Photobacterium profundum SS9 3123890 YP_129853.1 CDS PBPRA1640 NC_006370.1 1870174 1871124 R transposase complement(1870174..1871124) Photobacterium profundum SS9 3124585 YP_129854.1 CDS PBPRA1641 NC_006370.1 1871643 1872839 R transposase complement(1871643..1872839) Photobacterium profundum SS9 3122908 YP_129855.1 CDS PBPRA1642 NC_006370.1 1873072 1873623 D hypothetical protein 1873072..1873623 Photobacterium profundum SS9 3122743 YP_129856.1 CDS PBPRA1643 NC_006370.1 1874053 1874385 R hypothetical protein complement(1874053..1874385) Photobacterium profundum SS9 3122666 YP_129857.1 CDS PBPRA1644 NC_006370.1 1874397 1874663 R hypothetical protein complement(1874397..1874663) Photobacterium profundum SS9 3122482 YP_129858.1 CDS PBPRA1645 NC_006370.1 1874783 1875406 D hypothetical protein 1874783..1875406 Photobacterium profundum SS9 3124009 YP_129859.1 CDS PBPRA1646 NC_006370.1 1875679 1876620 R hypothetical protein complement(1875679..1876620) Photobacterium profundum SS9 3123897 YP_129860.1 CDS PBPRA1647 NC_006370.1 1876739 1877068 R Na(+)/H(+) antiporter complement(1876739..1877068) Photobacterium profundum SS9 3123220 YP_129861.1 CDS PBPRA1648 NC_006370.1 1877230 1877730 D hypothetical protein 1877230..1877730 Photobacterium profundum SS9 3124799 YP_129862.1 CDS PBPRA1649 NC_006370.1 1878457 1878786 R hypothetical protein complement(1878457..1878786) Photobacterium profundum SS9 3122012 YP_129863.1 CDS PBPRA1650 NC_006370.1 1878901 1879578 D hypothetical protein 1878901..1879578 Photobacterium profundum SS9 3124127 YP_129864.1 CDS PBPRA1651 NC_006370.1 1879600 1879881 R hypothetical protein complement(1879600..1879881) Photobacterium profundum SS9 3124168 YP_129865.1 CDS PBPRA1652 NC_006370.1 1880243 1880686 D hypothetical protein 1880243..1880686 Photobacterium profundum SS9 3122970 YP_129866.1 CDS PBPRA1653 NC_006370.1 1880786 1881802 D transposase 1880786..1881802 Photobacterium profundum SS9 3122877 YP_129867.1 CDS PBPRA1654 NC_006370.1 1882111 1882533 D hypothetical protein 1882111..1882533 Photobacterium profundum SS9 3123342 YP_129868.1 CDS PBPRA1655 NC_006370.1 1882573 1883349 D hypothetical protein 1882573..1883349 Photobacterium profundum SS9 3122099 YP_129869.1 CDS PBPRA1656 NC_006370.1 1883403 1884056 R glutathione S-transferase complement(1883403..1884056) Photobacterium profundum SS9 3122381 YP_129870.1 CDS PBPRA1657 NC_006370.1 1884213 1885799 R ABC transporter ATPase complement(1884213..1885799) Photobacterium profundum SS9 3122212 YP_129871.1 CDS PBPRA1658 NC_006370.1 1886154 1886897 D hypothetical protein 1886154..1886897 Photobacterium profundum SS9 3125070 YP_129872.1 CDS PBPRA1659 NC_006370.1 1887599 1889125 D hypothetical protein 1887599..1889125 Photobacterium profundum SS9 3123229 YP_129873.1 CDS PBPRA1660 NC_006370.1 1889299 1890951 D hypothetical protein 1889299..1890951 Photobacterium profundum SS9 3122057 YP_129874.1 CDS PBPRA1661 NC_006370.1 1890944 1892632 D ABC transporter ATP-binding protein 1890944..1892632 Photobacterium profundum SS9 3122392 YP_129875.1 CDS PBPRA1662 NC_006370.1 1892709 1894352 R EntE, peptide arylation enzyme complement(1892709..1894352) Photobacterium profundum SS9 3123973 YP_129876.1 CDS PBPRA1663 NC_006370.1 1894349 1895752 R hypotetical anthranilate synthase complement(1894349..1895752) Photobacterium profundum SS9 3123984 YP_129877.1 CDS PBPRA1664 NC_006370.1 1895774 1896610 R thioesterase complement(1895774..1896610) Photobacterium profundum SS9 3125265 YP_129878.2 CDS PBPRA1665 NC_006370.1 1896624 1897706 R reductase component complement(1896624..1897706) Photobacterium profundum SS9 3122963 YP_129879.1 CDS PBPRA1666 NC_006370.1 1897699 1899423 R AMP-binding enzyme complement(1897699..1899423) Photobacterium profundum SS9 3122882 YP_129880.1 CDS PBPRA1667 NC_006370.1 1899721 1909869 R Beta-ketoacyl synthase complement(1899721..1909869) Photobacterium profundum SS9 3123452 YP_129881.1 CDS PBPRA1668 NC_006370.1 1909933 1916121 R non-ribosomal peptide synthetase complement(1909933..1916121) Photobacterium profundum SS9 3125540 YP_129882.1 CDS PBPRA1669 NC_006370.1 1916238 1917506 R hypothetical protein complement(1916238..1917506) Photobacterium profundum SS9 3124538 YP_129883.1 CDS PBPRA1670 NC_006370.1 1917511 1919478 R outer membrane receptor complement(1917511..1919478) Photobacterium profundum SS9 3122777 YP_129884.1 CDS PBPRA1671 NC_006370.1 1919730 1920662 R transcriptional regulator complement(1919730..1920662) Photobacterium profundum SS9 3122667 YP_129885.1 CDS PBPRA1672 NC_006370.1 1920893 1921858 R AraC family transcriptional regulator complement(1920893..1921858) Photobacterium profundum SS9 3124609 YP_129886.1 CDS PBPRA1677 NC_006370.1 1923083 1923430 D transposase 1923083..1923430 Photobacterium profundum SS9 3125100 YP_129887.1 CDS PBPRA1678 NC_006370.1 1923649 1924122 D signal peptide protein 1923649..1924122 Photobacterium profundum SS9 3124962 YP_129888.1 CDS PBPRA1679 NC_006370.1 1924383 1925891 D transport protein 1924383..1925891 Photobacterium profundum SS9 3125245 YP_129889.1 CDS PBPRA1680 NC_006370.1 1925984 1927474 R hypothetical protein complement(1925984..1927474) Photobacterium profundum SS9 3125152 YP_129890.1 CDS PBPRA1681 NC_006370.1 1927752 1928123 D spore germination protein 1927752..1928123 Photobacterium profundum SS9 3125097 YP_129891.1 CDS PBPRA1682 NC_006370.1 1928128 1928565 R hypothetical protein complement(1928128..1928565) Photobacterium profundum SS9 3124677 YP_129892.1 CDS PBPRA1683 NC_006370.1 1928812 1929120 D hypothetical protein 1928812..1929120 Photobacterium profundum SS9 3124628 YP_129893.1 CDS PBPRA1684 NC_006370.1 1929359 1930000 D catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 1929359..1930000 Photobacterium profundum SS9 3124599 YP_129894.1 CDS purT NC_006370.1 1930187 1931362 R non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 complement(1930187..1931362) Photobacterium profundum SS9 3124653 YP_129895.1 CDS PBPRA1686 NC_006370.1 1931805 1932182 D hypothetical protein 1931805..1932182 Photobacterium profundum SS9 3124620 YP_129896.1 CDS PBPRA1687 NC_006370.1 1932305 1933276 R immunogenic protein complement(1932305..1933276) Photobacterium profundum SS9 3124621 YP_129897.1 CDS PBPRA1688 NC_006370.1 1933615 1934511 R transporter complement(1933615..1934511) Photobacterium profundum SS9 3124646 YP_129898.1 CDS PBPRA1689 NC_006370.1 1934681 1935568 R Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase complement(1934681..1935568) Photobacterium profundum SS9 3124678 YP_129899.1 CDS PBPRA1690 NC_006370.1 1935780 1936463 R yohK (seritonin transporter) complement(1935780..1936463) Photobacterium profundum SS9 3125398 YP_129900.1 CDS PBPRA1691 NC_006370.1 1936463 1936801 R hypothetical protein complement(1936463..1936801) Photobacterium profundum SS9 3123300 YP_129901.1 CDS PBPRA1692 NC_006370.1 1936945 1937469 R hypothetical protein complement(1936945..1937469) Photobacterium profundum SS9 3124342 YP_129902.1 CDS sbcB NC_006370.1 1937769 1939193 R Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I complement(1937769..1939193) Photobacterium profundum SS9 3122812 YP_129903.1 CDS PBPRA1694 NC_006370.1 1939371 1940546 D hypothetical protein 1939371..1940546 Photobacterium profundum SS9 3121968 YP_129904.1 CDS PBPRA1695 NC_006370.1 1940780 1941061 D hypothetical protein 1940780..1941061 Photobacterium profundum SS9 3123248 YP_129905.1 CDS PBPRA1696 NC_006370.1 1941058 1941357 D hypothetical protein 1941058..1941357 Photobacterium profundum SS9 3125227 YP_129906.1 CDS PBPRA1697 NC_006370.1 1941598 1942650 R IS91 family transposase complement(1941598..1942650) Photobacterium profundum SS9 3125038 YP_129907.1 CDS PBPRA1698 NC_006370.1 1942647 1943189 R integrase-recombinase complement(1942647..1943189) Photobacterium profundum SS9 3125065 YP_129908.1 CDS PBPRA1699 NC_006370.1 1943589 1943885 D hypothetical protein 1943589..1943885 Photobacterium profundum SS9 3124828 YP_129909.1 CDS PBPRA1700 NC_006370.1 1944160 1944888 D hypothetical protein 1944160..1944888 Photobacterium profundum SS9 3124670 YP_129910.1 CDS PBPRA1701 NC_006370.1 1945084 1946649 R hypothetical protein complement(1945084..1946649) Photobacterium profundum SS9 3124598 YP_129911.1 CDS PBPRA1702 NC_006370.1 1947212 1948249 R hypothetical protein complement(1947212..1948249) Photobacterium profundum SS9 3124527 YP_129912.1 CDS PBPRA1703 NC_006370.1 1948293 1948670 D hypothetical protein 1948293..1948670 Photobacterium profundum SS9 3122569 YP_129913.1 CDS PBPRA1704 NC_006370.1 1948720 1949739 R transposase complement(1948720..1949739) Photobacterium profundum SS9 3124404 YP_129914.1 CDS PBPRA1705 NC_006370.1 1949772 1950293 R transposase complement(1949772..1950293) Photobacterium profundum SS9 3124409 YP_129915.1 CDS PBPRA1706 NC_006370.1 1950895 1951350 D transposase 1950895..1951350 Photobacterium profundum SS9 3124282 YP_129916.1 CDS PBPRA1707 NC_006370.1 1951527 1951832 D ATP-dependent helicase 1951527..1951832 Photobacterium profundum SS9 3125043 YP_129917.1 CDS PBPRA1708 NC_006370.1 1951855 1952730 R hypothetical protein complement(1951855..1952730) Photobacterium profundum SS9 3124553 YP_129918.1 CDS PBPRA1709 NC_006370.1 1953610 1954890 D transposase 1953610..1954890 Photobacterium profundum SS9 3124419 YP_129919.1 CDS PBPRA1710 NC_006370.1 1955049 1956059 D hypothetical protein 1955049..1956059 Photobacterium profundum SS9 3124234 YP_129920.1 CDS PBPRA1711 NC_006370.1 1956066 1956422 D hypothetical protein 1956066..1956422 Photobacterium profundum SS9 3125000 YP_129921.1 CDS PBPRA1712 NC_006370.1 1956795 1957826 D hypothetical protein 1956795..1957826 Photobacterium profundum SS9 3125186 YP_129922.1 CDS PBPRA1713 NC_006370.1 1957877 1958242 D hypothetical protein 1957877..1958242 Photobacterium profundum SS9 3122480 YP_129923.1 CDS PBPRA1714 NC_006370.1 1958431 1958889 R hypothetical protein complement(1958431..1958889) Photobacterium profundum SS9 3122782 YP_129924.1 CDS PBPRA1715 NC_006370.1 1958911 1961082 R hypothetical protein complement(1958911..1961082) Photobacterium profundum SS9 3122918 YP_129925.1 CDS PBPRA1716 NC_006370.1 1961413 1963050 R hypothetical protein complement(1961413..1963050) Photobacterium profundum SS9 3122469 YP_129926.1 CDS PBPRA1717 NC_006370.1 1963238 1964830 R hypothetical protein complement(1963238..1964830) Photobacterium profundum SS9 3125189 YP_129927.1 CDS PBPRA1718 NC_006370.1 1964981 1965229 D hypothetical protein 1964981..1965229 Photobacterium profundum SS9 3123320 YP_129928.1 CDS PBPRA1719 NC_006370.1 1965230 1966039 D hypothetical protein 1965230..1966039 Photobacterium profundum SS9 3123216 YP_129929.1 CDS bcsA NC_006370.1 1966026 1968656 D polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis; cellulose synthase catalytic subunit 1966026..1968656 Photobacterium profundum SS9 3123161 YP_129930.1 CDS PBPRA1721 NC_006370.1 1968646 1970922 D binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); cellulose synthase regulator protein 1968646..1970922 Photobacterium profundum SS9 3125025 YP_129931.1 CDS PBPRA1722 NC_006370.1 1970919 1972028 D catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; endo-1,4-D-glucanase 1970919..1972028 Photobacterium profundum SS9 3124446 YP_129932.1 CDS PBPRA1723 NC_006370.1 1972025 1975810 D hypothetical protein 1972025..1975810 Photobacterium profundum SS9 3122747 YP_129933.1 CDS PBPRA1724 NC_006370.1 1975910 1977349 R catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase complement(1975910..1977349) Photobacterium profundum SS9 3122598 YP_129934.1 CDS anmK NC_006370.1 1977968 1979125 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase complement(1977968..1979125) Photobacterium profundum SS9 3125062 YP_129935.1 CDS PBPRA1726 NC_006370.1 1979354 1981219 R maltodextrin glucosidase complement(1979354..1981219) Photobacterium profundum SS9 3124956 YP_129936.1 CDS PBPRA1727 NC_006370.1 1981456 1981899 R hypothetical protein complement(1981456..1981899) Photobacterium profundum SS9 3124970 YP_129937.1 CDS PBPRA1728 NC_006370.1 1982050 1982982 R LysR family transcriptional regulator complement(1982050..1982982) Photobacterium profundum SS9 3125108 YP_129938.1 CDS PBPRA1729 NC_006370.1 1983189 1984400 D catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate CoA ligase 1983189..1984400 Photobacterium profundum SS9 3125024 YP_129939.2 CDS tdh NC_006370.1 1984587 1985618 D converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 1984587..1985618 Photobacterium profundum SS9 3125455 YP_129940.1 CDS PBPRA1731 NC_006370.1 1985752 1986177 R hypothetical protein complement(1985752..1986177) Photobacterium profundum SS9 3125067 YP_129941.1 CDS PBPRA1732 NC_006370.1 1986300 1987094 R hypothetical protein complement(1986300..1987094) Photobacterium profundum SS9 3123148 YP_129942.1 CDS PBPRA1733 NC_006370.1 1987474 1988628 R hypothetical protein complement(1987474..1988628) Photobacterium profundum SS9 3122640 YP_129943.1 CDS PBPRA1734 NC_006370.1 1988825 1989751 D hypothetical protein 1988825..1989751 Photobacterium profundum SS9 3124985 YP_129944.1 CDS PBPRA1735 NC_006370.1 1989850 1991304 D hypothetical protein 1989850..1991304 Photobacterium profundum SS9 3124911 YP_129945.1 CDS PBPRA1736 NC_006370.1 1991734 1992651 D hypothetical protein 1991734..1992651 Photobacterium profundum SS9 3124728 YP_129946.1 CDS PBPRA1737 NC_006370.1 1992838 1994433 D ABC transporter, ATP-binding protein 1992838..1994433 Photobacterium profundum SS9 3124288 YP_129947.1 CDS PBPRA1738 NC_006370.1 1994593 1995045 D hypothetical protein 1994593..1995045 Photobacterium profundum SS9 3123742 YP_129948.1 CDS PBPRA1739 NC_006370.1 1995229 1995507 D hypothetical protein 1995229..1995507 Photobacterium profundum SS9 3124625 YP_129949.1 CDS PBPRA1740 NC_006370.1 1995575 1996657 R hypothetical protein complement(1995575..1996657) Photobacterium profundum SS9 3125093 YP_129950.1 CDS PBPRA1741 NC_006370.1 1996838 1997512 R hypothetical protein complement(1996838..1997512) Photobacterium profundum SS9 3125030 YP_129951.1 CDS PBPRA1742 NC_006370.1 1997741 1998100 R hypothetical protein complement(1997741..1998100) Photobacterium profundum SS9 3122883 YP_129952.1 CDS PBPRA1743 NC_006370.1 1998575 1999492 D chemotaxis protein CheY 1998575..1999492 Photobacterium profundum SS9 3125158 YP_129953.1 CDS PBPRA1744 NC_006370.1 1999489 2000469 D sensory box/GGDEF family protein 1999489..2000469 Photobacterium profundum SS9 3125075 YP_129954.1 CDS PBPRA1745 NC_006370.1 2000551 2000895 D hypothetical protein 2000551..2000895 Photobacterium profundum SS9 3125163 YP_129955.1 CDS PBPRA1746 NC_006370.1 2001313 2002041 D hypothetical protein 2001313..2002041 Photobacterium profundum SS9 3125219 YP_129956.1 CDS PBPRA1747 NC_006370.1 2002480 2003391 D catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine; N-acetyl-D-glucosamine kinase 2002480..2003391 Photobacterium profundum SS9 3124377 YP_129957.1 CDS PBPRA1748 NC_006370.1 2003598 2004866 D ATP-dependent RNA helicase 2003598..2004866 Photobacterium profundum SS9 3123107 YP_129958.1 CDS PBPRA1749 NC_006370.1 2005183 2005959 R hypothetical protein complement(2005183..2005959) Photobacterium profundum SS9 3122374 YP_129959.1 CDS PBPRA1750 NC_006370.1 2006309 2007142 R hypothetical protein complement(2006309..2007142) Photobacterium profundum SS9 3121995 YP_129960.1 CDS PBPRA1751 NC_006370.1 2007327 2009690 D catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 2007327..2009690 Photobacterium profundum SS9 3125331 YP_129961.1 CDS PBPRA1752 NC_006370.1 2009762 2010211 R hypothetical protein complement(2009762..2010211) Photobacterium profundum SS9 3125493 YP_129962.1 CDS PBPRA1753 NC_006370.1 2010398 2011282 R AraC family transcriptional regulator complement(2010398..2011282) Photobacterium profundum SS9 3123506 YP_129963.1 CDS PBPRA1754 NC_006370.1 2011430 2011747 R hypothetical protein complement(2011430..2011747) Photobacterium profundum SS9 3123463 YP_129964.1 CDS PBPRA1755 NC_006370.1 2011744 2013309 R hypothetical protein complement(2011744..2013309) Photobacterium profundum SS9 3123019 YP_129965.1 CDS PBPRA1756 NC_006370.1 2014654 2014914 D hypothetical protein 2014654..2014914 Photobacterium profundum SS9 3123193 YP_129966.2 CDS PBPRA1757 NC_006370.1 2014986 2018825 D involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain; ATP-dependent RNA helicase HrpA 2014986..2018825 Photobacterium profundum SS9 3123078 YP_129967.1 CDS PBPRA1758 NC_006370.1 2019038 2021296 D collagenase family protease 2019038..2021296 Photobacterium profundum SS9 3123761 YP_129968.1 CDS PBPRA1759 NC_006370.1 2021519 2021977 D hypothetical protein 2021519..2021977 Photobacterium profundum SS9 3123937 YP_129969.1 CDS PBPRA1760 NC_006370.1 2022424 2023812 R PTS system glucose-specific II BC component complement(2022424..2023812) Photobacterium profundum SS9 3123338 YP_129970.1 CDS PBPRA1761 NC_006370.1 2024341 2024748 R hypothetical protein complement(2024341..2024748) Photobacterium profundum SS9 3123197 YP_129971.1 CDS PBPRA1762 NC_006370.1 2024772 2025128 R hypothetical protein complement(2024772..2025128) Photobacterium profundum SS9 3125167 YP_129972.1 CDS PBPRA1763 NC_006370.1 2025357 2026574 R catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(2025357..2026574) Photobacterium profundum SS9 3124035 YP_129973.1 CDS pepN NC_006370.1 2026907 2029534 D aminopeptidase 2026907..2029534 Photobacterium profundum SS9 3125378 YP_129974.1 CDS PBPRA1765 NC_006370.1 2029586 2029870 D hypothetical protein 2029586..2029870 Photobacterium profundum SS9 3125528 YP_129975.1 CDS PBPRA1766 NC_006370.1 2030254 2035083 D NAD-glutamate dehydrogenase 2030254..2035083 Photobacterium profundum SS9 3123194 YP_129976.1 CDS PBPRA1767 NC_006370.1 2035405 2036415 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2035405..2036415 Photobacterium profundum SS9 3125082 YP_129977.1 CDS PBPRA1768 NC_006370.1 2036659 2037198 D hypothetical protein 2036659..2037198 Photobacterium profundum SS9 3125224 YP_129978.1 CDS rlmL NC_006370.1 2038189 2040327 D catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 2038189..2040327 Photobacterium profundum SS9 3123889 YP_129979.1 CDS PBPRA1770 NC_006370.1 2040328 2040651 D hypothetical protein 2040328..2040651 Photobacterium profundum SS9 3123944 YP_129980.1 CDS PBPRA1771 NC_006370.1 2040638 2042566 D Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase component 2040638..2042566 Photobacterium profundum SS9 3122801 YP_129981.1 CDS PBPRA1772 NC_006370.1 2042566 2044626 D hypothetical protein 2042566..2044626 Photobacterium profundum SS9 3124027 YP_129982.1 CDS PBPRA1773 NC_006370.1 2045256 2045771 R catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase complement(2045256..2045771) Photobacterium profundum SS9 3124130 YP_129983.1 CDS PBPRA1774 NC_006370.1 2045840 2047588 R ATP-dependent protease LA-like protein complement(2045840..2047588) Photobacterium profundum SS9 3123312 YP_129984.1 CDS PBPRA1775 NC_006370.1 2047783 2048229 D hypothetical protein 2047783..2048229 Photobacterium profundum SS9 3123277 YP_129985.1 CDS PBPRA1776 NC_006370.1 2048324 2048629 D hypothetical protein 2048324..2048629 Photobacterium profundum SS9 3123072 YP_129986.1 CDS PBPRA1777 NC_006370.1 2048716 2049111 D DNA-binding protein 2048716..2049111 Photobacterium profundum SS9 3123112 YP_129987.1 CDS PBPRA1778 NC_006370.1 2049542 2049787 R hypothetical protein complement(2049542..2049787) Photobacterium profundum SS9 3125364 YP_129988.1 CDS PBPRA1779 NC_006370.1 2050078 2050800 D hypothetical protein 2050078..2050800 Photobacterium profundum SS9 3125072 YP_129989.1 CDS PBPRA1780 NC_006370.1 <2051246 2051473 R hypothetical protein complement(<2051246..2051473) Photobacterium profundum SS9 3124083 YP_129990.1 CDS PBPRA1781 NC_006370.1 2051466 2052212 R hypothetical protein complement(2051466..2052212) Photobacterium profundum SS9 3123472 YP_129991.1 CDS PBPRA1782 NC_006370.1 2052332 2053018 R hypothetical protein complement(2052332..2053018) Photobacterium profundum SS9 3123239 YP_129992.1 CDS PBPRA1783 NC_006370.1 2053063 2053404 R hypothetical protein complement(2053063..2053404) Photobacterium profundum SS9 3122879 YP_129993.1 CDS PBPRA1784 NC_006370.1 2053492 2054778 D transposase 2053492..2054778 Photobacterium profundum SS9 3123820 YP_129994.1 CDS PBPRA1785 NC_006370.1 2054980 2055660 R hypothetical protein complement(2054980..2055660) Photobacterium profundum SS9 3123898 YP_129995.1 CDS PBPRA1786 NC_006370.1 2056875 2058044 D transcriptional regulator 2056875..2058044 Photobacterium profundum SS9 3125138 YP_129996.1 CDS PBPRA1787 NC_006370.1 2058109 2058555 D acetyltransferase 2058109..2058555 Photobacterium profundum SS9 3122094 YP_129997.1 CDS PBPRA1788 NC_006370.1 2058745 >2059500 D transposase 2058745..>2059500 Photobacterium profundum SS9 3122249 YP_129998.1 CDS PBPRA1789 NC_006370.1 2060063 2061112 D EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 2060063..2061112 Photobacterium profundum SS9 3122874 YP_129999.1 CDS PBPRA1790 NC_006370.1 2061449 2061739 D hypothetical protein 2061449..2061739 Photobacterium profundum SS9 3124491 YP_130000.1 CDS PBPRA1791 NC_006370.1 2061915 2062199 D hypothetical protein 2061915..2062199 Photobacterium profundum SS9 3123291 YP_130001.1 CDS PBPRA1792 NC_006370.1 2062581 2062955 R hypothetical protein complement(2062581..2062955) Photobacterium profundum SS9 3123206 YP_130002.1 CDS PBPRA1793 NC_006370.1 2063316 2063951 D hypothetical protein 2063316..2063951 Photobacterium profundum SS9 3123061 YP_130003.1 CDS PBPRA1796 NC_006370.1 2066202 2068055 R hypothetical protein complement(2066202..2068055) Photobacterium profundum SS9 3125371 YP_130004.1 CDS PBPRA1797 NC_006370.1 2068142 2068954 R hypothetical protein complement(2068142..2068954) Photobacterium profundum SS9 3122710 YP_130005.1 CDS PBPRA1798 NC_006370.1 2068972 2069655 R hypothetical protein complement(2068972..2069655) Photobacterium profundum SS9 3123038 YP_130006.1 CDS PBPRA1799 NC_006370.1 2069799 2071712 R hypothetical protein complement(2069799..2071712) Photobacterium profundum SS9 3124173 YP_130007.1 CDS PBPRA1800 NC_006370.1 2071702 2073045 R hypothetical protein complement(2071702..2073045) Photobacterium profundum SS9 3125397 YP_130008.1 CDS PBPRA1801 NC_006370.1 2073201 2075102 R hypothetical protein complement(2073201..2075102) Photobacterium profundum SS9 3123434 YP_130009.1 CDS PBPRA1802 NC_006370.1 2075105 2076760 R Type I restriction enzyme ecoeispecificity protein complement(2075105..2076760) Photobacterium profundum SS9 3124946 YP_130010.1 CDS PBPRA1803 NC_006370.1 2076886 2078388 R type I restriction enzyme EcoEI Mprotein complement(2076886..2078388) Photobacterium profundum SS9 3125377 YP_130011.1 CDS PBPRA1804 NC_006370.1 2078558 2081029 R type I restriction enzyme R protein complement(2078558..2081029) Photobacterium profundum SS9 3123474 YP_130012.1 CDS PBPRA1805 NC_006370.1 2081164 2082540 R hypothetical protein complement(2081164..2082540) Photobacterium profundum SS9 3122337 YP_130013.1 CDS PBPRA1806 NC_006370.1 2082537 2083088 R hypothetical protein complement(2082537..2083088) Photobacterium profundum SS9 3122994 YP_130014.1 CDS PBPRA1807 NC_006370.1 2083239 2083544 D transcriptional regulator 2083239..2083544 Photobacterium profundum SS9 3124193 YP_130015.1 CDS PBPRA1808 NC_006370.1 2083941 2084273 D hypothetical protein 2083941..2084273 Photobacterium profundum SS9 3122984 YP_130016.1 CDS PBPRA1809 NC_006370.1 2084517 2085404 D hypothetical protein 2084517..2085404 Photobacterium profundum SS9 3125144 YP_130017.1 CDS PBPRA1810 NC_006370.1 2085394 2086962 D hypothetical protein 2085394..2086962 Photobacterium profundum SS9 3125424 YP_130018.1 CDS PBPRA1811 NC_006370.1 2087275 2088471 D hypothetical protein 2087275..2088471 Photobacterium profundum SS9 3123135 YP_130019.1 CDS PBPRA1812 NC_006370.1 2088613 2090895 D hypothetical protein 2088613..2090895 Photobacterium profundum SS9 3123189 YP_130020.1 CDS PBPRA1813 NC_006370.1 2090895 2091353 D hypothetical protein 2090895..2091353 Photobacterium profundum SS9 3123337 YP_130021.1 CDS PBPRA1814 NC_006370.1 2091343 2091798 D hypothetical protein 2091343..2091798 Photobacterium profundum SS9 3123379 YP_130022.1 CDS PBPRA1815 NC_006370.1 2091798 2093969 D ATP-dependent exoDNAse (exonuclease V), alpha subunit 2091798..2093969 Photobacterium profundum SS9 3123227 YP_130023.1 CDS PBPRA1816 NC_006370.1 2094137 2094469 R hypothetical protein complement(2094137..2094469) Photobacterium profundum SS9 3122009 YP_130024.1 CDS PBPRA1817 NC_006370.1 2094466 2095554 R cell division protein complement(2094466..2095554) Photobacterium profundum SS9 3125018 YP_130025.1 CDS PBPRA1818 NC_006370.1 2096006 2096992 R hypothetical protein complement(2096006..2096992) Photobacterium profundum SS9 3125400 YP_130026.1 CDS PBPRA1820 NC_006370.1 2097999 2099564 D hypothetical protein 2097999..2099564 Photobacterium profundum SS9 3123322 YP_130027.1 CDS PBPRA1821 NC_006370.1 2099517 2100464 R hypothetical protein complement(2099517..2100464) Photobacterium profundum SS9 3123003 YP_130028.1 CDS PBPRA1822 NC_006370.1 2100487 2102529 R hypothetical protein complement(2100487..2102529) Photobacterium profundum SS9 3123350 YP_130029.1 CDS PBPRA1823 NC_006370.1 2102698 2103021 D hypothetical protein 2102698..2103021 Photobacterium profundum SS9 3122308 YP_130030.1 CDS PBPRA1824 NC_006370.1 2103018 2103371 D hypothetical protein 2103018..2103371 Photobacterium profundum SS9 3123139 YP_130031.1 CDS PBPRA1825 NC_006370.1 2103431 2104594 D ISPpu15 transposase Orf2 2103431..2104594 Photobacterium profundum SS9 3123202 YP_130032.1 CDS PBPRA1826 NC_006370.1 2105080 2107758 R hypothetical protein complement(2105080..2107758) Photobacterium profundum SS9 3125272 YP_130033.1 CDS PBPRA1827 NC_006370.1 2108443 2110524 R hypothetical protein complement(2108443..2110524) Photobacterium profundum SS9 3124729 YP_130034.1 CDS PBPRA1828 NC_006370.1 2110505 2111713 R hypothetical protein complement(2110505..2111713) Photobacterium profundum SS9 3124896 YP_130035.1 CDS PBPRA1829 NC_006370.1 2111853 2112608 D short chain dehydrogenase/reductase family oxidoreductase 2111853..2112608 Photobacterium profundum SS9 3123343 YP_130036.1 CDS PBPRA1830 NC_006370.1 2112759 2113202 R hypothetical protein complement(2112759..2113202) Photobacterium profundum SS9 3124471 YP_130037.1 CDS PBPRA1831 NC_006370.1 2113474 2114901 D CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 2113474..2114901 Photobacterium profundum SS9 3125141 YP_130038.1 CDS PBPRA1832 NC_006370.1 2114914 2115522 D CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 2114914..2115522 Photobacterium profundum SS9 3123103 YP_130039.1 CDS PBPRA1833 NC_006370.1 2115532 2115705 D cytochrome c oxidase, subunit CcoQ 2115532..2115705 Photobacterium profundum SS9 3125002 YP_130040.1 CDS PBPRA1834 NC_006370.1 2115711 2116691 D cytochrome c oxidase, subunit CcoP 2115711..2116691 Photobacterium profundum SS9 3123387 YP_130041.1 CDS PBPRA1835 NC_006370.1 2116813 2117307 D hypothetical protein 2116813..2117307 Photobacterium profundum SS9 3124115 YP_130042.1 CDS PBPRA1836 NC_006370.1 2117406 2119715 D cation transport ATPase E1-E2 family 2117406..2119715 Photobacterium profundum SS9 3123670 YP_130043.1 CDS PBPRA1837 NC_006370.1 2119932 2120609 D hypothetical protein 2119932..2120609 Photobacterium profundum SS9 3123245 YP_130044.1 CDS PBPRA1838 NC_006370.1 2120684 2121436 D Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 2120684..2121436 Photobacterium profundum SS9 3123976 YP_130045.2 CDS PBPRA1839 NC_006370.1 2121630 2122571 D with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 2121630..2122571 Photobacterium profundum SS9 3123925 YP_130046.1 CDS PBPRA1840 NC_006370.1 2122685 2123038 R hypothetical protein complement(2122685..2123038) Photobacterium profundum SS9 3123654 YP_130047.1 CDS PBPRA1841 NC_006370.1 2123443 2124348 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 2123443..2124348 Photobacterium profundum SS9 3123505 YP_130048.1 CDS PBPRA1842 NC_006370.1 2124505 2125719 R D-alanyl-D-alanine carboxypeptidase complement(2124505..2125719) Photobacterium profundum SS9 3124552 YP_130049.1 CDS PBPRA1843 NC_006370.1 2126195 2127679 D thermostable carboxypeptidase 1 2126195..2127679 Photobacterium profundum SS9 3123949 YP_130050.1 CDS PBPRA1844 NC_006370.1 2127842 2128162 D hypothetical protein 2127842..2128162 Photobacterium profundum SS9 3122372 YP_130051.1 CDS PBPRA1845 NC_006370.1 2128256 2128924 R hypothetical protein complement(2128256..2128924) Photobacterium profundum SS9 3125203 YP_130052.1 CDS PBPRA1846 NC_006370.1 2128936 2129340 R hypothetical protein complement(2128936..2129340) Photobacterium profundum SS9 3123725 YP_130053.1 CDS PBPRA1847 NC_006370.1 2129651 2130568 D hypothetical protein 2129651..2130568 Photobacterium profundum SS9 3123935 YP_130054.1 CDS PBPRA1848 NC_006370.1 2130671 2131900 R catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T complement(2130671..2131900) Photobacterium profundum SS9 3125458 YP_130055.1 CDS PBPRA1849 NC_006370.1 2132135 2132797 R hypothetical protein complement(2132135..2132797) Photobacterium profundum SS9 3124634 YP_130056.1 CDS PBPRA1850 NC_006370.1 2132798 2133565 R bax protein complement(2132798..2133565) Photobacterium profundum SS9 3125325 YP_130057.1 CDS PBPRA1851 NC_006370.1 2133565 2134548 R hypothetical protein complement(2133565..2134548) Photobacterium profundum SS9 3123029 YP_130058.1 CDS potA NC_006370.1 2134990 2136108 D functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase protein 2134990..2136108 Photobacterium profundum SS9 3125229 YP_130059.1 CDS potB NC_006370.1 2136092 2136949 D can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; spermidine/putrescine ABC transporter membrane protein 2136092..2136949 Photobacterium profundum SS9 3124622 YP_130060.1 CDS potC NC_006370.1 2136949 2137719 D can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter membrane protein 2136949..2137719 Photobacterium profundum SS9 3124432 YP_130061.1 CDS PBPRA1855 NC_006370.1 2137833 2138864 D spermidine/putrescine-binding periplasmic protein 2137833..2138864 Photobacterium profundum SS9 3123213 YP_130062.1 CDS PBPRA1856 NC_006370.1 2139093 2140136 D permidine/putrescine ABC transporter,periplasmic spermidine/putrescine-binding protein 2139093..2140136 Photobacterium profundum SS9 3123090 YP_130063.1 CDS PBPRA1857 NC_006370.1 2140253 2140687 R transposase complement(2140253..2140687) Photobacterium profundum SS9 3125336 YP_130064.1 CDS PBPRA1858 NC_006370.1 2141016 2141345 R hypothetical protein complement(2141016..2141345) Photobacterium profundum SS9 3124252 YP_130065.1 CDS PBPRA1859 NC_006370.1 2141675 2142391 R Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase complement(2141675..2142391) Photobacterium profundum SS9 3124231 YP_130066.1 CDS PBPRA1860 NC_006370.1 2142795 2143871 R formate dehydrogenase, cytochrome B556subunit complement(2142795..2143871) Photobacterium profundum SS9 3124075 YP_130067.1 CDS PBPRA1861 NC_006370.1 2144014 2144631 R formate dehydrogenase, iron-sulfur subunit complement(2144014..2144631) Photobacterium profundum SS9 3123060 YP_130068.1 CDS PBPRA1862 NC_006370.1 2144644 2147499 R formate dehydrogenase largesubunit complement(2144644..2147499) Photobacterium profundum SS9 3124007 YP_130069.1 CDS PBPRA1863 NC_006370.1 2147512 2147793 R hypothetical protein complement(2147512..2147793) Photobacterium profundum SS9 3124212 YP_130070.1 CDS PBPRA1864 NC_006370.1 2147815 2148423 R chaperone complement(2147815..2148423) Photobacterium profundum SS9 3124088 YP_130071.1 CDS PBPRA1865 NC_006370.1 2148448 2150193 R (Fe-S)-binding protein complement(2148448..2150193) Photobacterium profundum SS9 3122286 YP_130072.1 CDS PBPRA1866 NC_006370.1 2150464 2151189 R hypothetical protein complement(2150464..2151189) Photobacterium profundum SS9 3122136 YP_130073.1 CDS PBPRA1867 NC_006370.1 2151179 2151661 R hypothetical protein complement(2151179..2151661) Photobacterium profundum SS9 3123997 YP_130074.1 CDS PBPRA1868 NC_006370.1 2152039 2152932 D formate dehydrogenase accessory protein 2152039..2152932 Photobacterium profundum SS9 3122832 YP_130075.1 CDS PBPRA1869 NC_006370.1 2152932 2153846 D hypothetical protein 2152932..2153846 Photobacterium profundum SS9 3123304 YP_130076.1 CDS PBPRA1870 NC_006370.1 2154407 2156395 D short chain dehydrogenase 2154407..2156395 Photobacterium profundum SS9 3122721 YP_130077.1 CDS PBPRA1871 NC_006370.1 2156405 2156923 D hypothetical protein 2156405..2156923 Photobacterium profundum SS9 3125264 YP_130078.1 CDS PBPRA1872 NC_006370.1 2157049 2157681 D transcriptional regulator 2157049..2157681 Photobacterium profundum SS9 3123260 YP_130079.1 CDS PBPRA1873 NC_006370.1 2158190 2159155 D hypothetical protein 2158190..2159155 Photobacterium profundum SS9 3123960 YP_130080.1 CDS PBPRA1874 NC_006370.1 2159490 2159846 R hypothetical protein complement(2159490..2159846) Photobacterium profundum SS9 3123707 YP_130081.1 CDS PBPRA1875 NC_006370.1 2160026 2160976 D D-alanyl-D-alanine endopeptidase 2160026..2160976 Photobacterium profundum SS9 3125477 YP_130082.1 CDS PBPRA1876 NC_006370.1 2161121 2161870 R ribonuclease HI complement(2161121..2161870) Photobacterium profundum SS9 3125504 YP_130083.1 CDS PBPRA1877 NC_006370.1 2162016 2162435 R hypothetical protein complement(2162016..2162435) Photobacterium profundum SS9 3123530 YP_130084.1 CDS PBPRA1878 NC_006370.1 2162713 2163648 R lipase/esterase protein complement(2162713..2163648) Photobacterium profundum SS9 3124328 YP_130085.1 CDS PBPRA1879 NC_006370.1 2164041 2164400 R hypothetical protein complement(2164041..2164400) Photobacterium profundum SS9 3123871 YP_130086.1 CDS PBPRA1880 NC_006370.1 2164504 2165229 R hypothetical protein complement(2164504..2165229) Photobacterium profundum SS9 3123454 YP_130087.1 CDS PBPRA1881 NC_006370.1 2165472 2165798 R hypothetical protein complement(2165472..2165798) Photobacterium profundum SS9 3124159 YP_130088.1 CDS PBPRA1882 NC_006370.1 2165926 2166447 R hypothetical protein complement(2165926..2166447) Photobacterium profundum SS9 3123964 YP_130089.1 CDS PBPRA1883 NC_006370.1 2166730 2167983 D membrane-bound lytic murein transglycosylase D 2166730..2167983 Photobacterium profundum SS9 3122703 YP_130090.1 CDS PBPRA1884 NC_006370.1 2168040 2168441 R hypothetical protein complement(2168040..2168441) Photobacterium profundum SS9 3122726 YP_130091.1 CDS PBPRA1885 NC_006370.1 2168752 2170317 D hypothetical protein 2168752..2170317 Photobacterium profundum SS9 3123729 YP_130092.1 CDS PBPRA1886 NC_006370.1 2170660 2171862 D drug transport transmembrane protein 2170660..2171862 Photobacterium profundum SS9 3124205 YP_130093.1 CDS PBPRA1887 NC_006370.1 2172946 2174991 R sensor histidine kinase complement(2172946..2174991) Photobacterium profundum SS9 3123287 YP_130094.1 CDS PBPRA1888 NC_006370.1 2174988 2176457 R sigma-54 dependent response regulator complement(2174988..2176457) Photobacterium profundum SS9 3123051 YP_130095.1 CDS PBPRA1889 NC_006370.1 2176748 2177599 D extracellular tungstate binding protein 2176748..2177599 Photobacterium profundum SS9 3123738 YP_130096.1 CDS PBPRA1890 NC_006370.1 2177649 2178350 D ABC transporter permease 2177649..2178350 Photobacterium profundum SS9 3123971 YP_130097.1 CDS PBPRA1891 NC_006370.1 2178363 2179076 D ABC-type cobalt transport system, ATPase component 2178363..2179076 Photobacterium profundum SS9 3122919 YP_130098.1 CDS mobA NC_006370.1 2179063 2179647 D in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 2179063..2179647 Photobacterium profundum SS9 3124760 YP_130099.1 CDS PBPRA1893 NC_006370.1 2179644 2181440 D bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA 2179644..2181440 Photobacterium profundum SS9 3124997 YP_130100.1 CDS PBPRA1894 NC_006370.1 2182329 2183045 D hypothetical protein 2182329..2183045 Photobacterium profundum SS9 3124211 YP_130101.1 CDS PBPRA1895 NC_006370.1 2183189 2183440 D hypothetical protein 2183189..2183440 Photobacterium profundum SS9 3123832 YP_130102.1 CDS PBPRA1896 NC_006370.1 2183355 2184098 D transcriptional regulator 2183355..2184098 Photobacterium profundum SS9 3123876 YP_130103.1 CDS PBPRA1897 NC_006370.1 2184287 2185291 D hypothetical protein 2184287..2185291 Photobacterium profundum SS9 3123039 YP_130104.1 CDS PBPRA1898 NC_006370.1 2185335 2186312 D muconate cycloisomerase I 2185335..2186312 Photobacterium profundum SS9 3123479 YP_130105.1 CDS PBPRA1899 NC_006370.1 2186334 2187236 R hypothetical protein complement(2186334..2187236) Photobacterium profundum SS9 3122556 YP_130106.1 CDS PBPRA1900 NC_006370.1 2187543 2188829 D transposase 2187543..2188829 Photobacterium profundum SS9 3122226 YP_130107.1 CDS PBPRA1901 NC_006370.1 2188755 2189792 R Gfo/Idh/MocA family oxidoreductase complement(2188755..2189792) Photobacterium profundum SS9 3124892 YP_130108.1 CDS PBPRA1902 NC_006370.1 2190008 2190727 D phosphatidylglycerophosphatase B 2190008..2190727 Photobacterium profundum SS9 3123537 YP_130109.1 CDS PBPRA1903 NC_006370.1 2190879 2191241 R hypothetical protein complement(2190879..2191241) Photobacterium profundum SS9 3124779 YP_130110.1 CDS PBPRA1904 NC_006370.1 2191579 2192004 D hypothetical protein 2191579..2192004 Photobacterium profundum SS9 3124722 YP_130111.1 CDS PBPRA1905 NC_006370.1 2192082 2192525 D metal-binding protein 2192082..2192525 Photobacterium profundum SS9 3123730 YP_130112.1 CDS PBPRA1906 NC_006370.1 2192639 2193625 R hypothetical protein complement(2192639..2193625) Photobacterium profundum SS9 3123605 YP_130113.1 CDS PBPRA1907 NC_006370.1 2193904 2194605 D hypothetical protein 2193904..2194605 Photobacterium profundum SS9 3121975 YP_130114.1 CDS PBPRA1908 NC_006370.1 2194890 2196194 D inosine-guanosine kinase 2194890..2196194 Photobacterium profundum SS9 3122019 YP_130115.1 CDS PBPRA1909 NC_006370.1 2196332 2196541 R cold shock-like protein complement(2196332..2196541) Photobacterium profundum SS9 3125205 YP_130116.1 CDS PBPRA1910 NC_006370.1 2196902 2197792 R chemotaxis protein CheV complement(2196902..2197792) Photobacterium profundum SS9 3123255 YP_130117.1 CDS PBPRA1911 NC_006370.1 2198070 2198240 D hypothetical protein 2198070..2198240 Photobacterium profundum SS9 3122847 YP_130118.1 CDS PBPRA1912 NC_006370.1 2198663 2199127 D hypothetical protein 2198663..2199127 Photobacterium profundum SS9 3124781 YP_130119.1 CDS PBPRA1913 NC_006370.1 2199532 2199858 R hypothetical protein complement(2199532..2199858) Photobacterium profundum SS9 3124881 YP_130120.1 CDS PBPRA1914 NC_006370.1 2200024 2200653 D hypothetical protein 2200024..2200653 Photobacterium profundum SS9 3123552 YP_130121.2 CDS PBPRA1915 NC_006370.1 2200939 2201514 R Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein; elongation factor P complement(2200939..2201514) Photobacterium profundum SS9 3125524 YP_130122.1 CDS PBPRA1916 NC_006370.1 2201766 2202044 R hypothetical protein complement(2201766..2202044) Photobacterium profundum SS9 3123365 YP_130123.1 CDS PBPRA1917 NC_006370.1 2202181 2202762 R hypothetical protein complement(2202181..2202762) Photobacterium profundum SS9 3124263 YP_130124.1 CDS PBPRA1918 NC_006370.1 2202817 2203236 R glyoxalase family protein complement(2202817..2203236) Photobacterium profundum SS9 3124095 YP_130125.1 CDS PBPRA1919 NC_006370.1 2203317 2204678 D hypothetical protein 2203317..2204678 Photobacterium profundum SS9 3123851 YP_130126.1 CDS PBPRA1920 NC_006370.1 2204741 2205403 R hypothetical protein complement(2204741..2205403) Photobacterium profundum SS9 3124078 YP_130127.1 CDS PBPRA1921 NC_006370.1 2205646 2207646 R Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease complement(2205646..2207646) Photobacterium profundum SS9 3123645 YP_130128.1 CDS PBPRA1922 NC_006370.1 2207664 2208308 R affects solute and DNA transport through an unknown mechanism; solute/DNA competence effector complement(2207664..2208308) Photobacterium profundum SS9 3123591 YP_130129.1 CDS PBPRA1923 NC_006370.1 2208418 2208825 R hypothetical protein complement(2208418..2208825) Photobacterium profundum SS9 3122488 YP_130130.1 CDS PBPRA1924 NC_006370.1 2208825 2210891 D ABC transporter, ATP-binding protein 2208825..2210891 Photobacterium profundum SS9 3124183 YP_130131.1 CDS PBPRA1925 NC_006370.1 2210993 2212270 D hypothetical protein 2210993..2212270 Photobacterium profundum SS9 3123205 YP_130132.1 CDS PBPRA1926 NC_006370.1 2212251 2214878 D paraquat-inducible protein B 2212251..2214878 Photobacterium profundum SS9 3122391 YP_130133.1 CDS yebU NC_006370.1 2215026 2216480 D in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 2215026..2216480 Photobacterium profundum SS9 3125214 YP_130134.1 CDS PBPRA1928 NC_006370.1 2217089 2217454 D hypothetical protein 2217089..2217454 Photobacterium profundum SS9 3124857 YP_130135.1 CDS PBPRA1929 NC_006370.1 2217833 2219245 R xanthine/uracil permease complement(2217833..2219245) Photobacterium profundum SS9 3122975 YP_130136.1 CDS PBPRA1930 NC_006370.1 2219488 2220804 R Catalyzes the deamination of guanine; guanine deaminase complement(2219488..2220804) Photobacterium profundum SS9 3122926 YP_130137.1 CDS PBPRA1931 NC_006370.1 2221025 2222506 R xanthine permease complement(2221025..2222506) Photobacterium profundum SS9 3124499 YP_130138.1 CDS PBPRA1932 NC_006370.1 2222702 2225572 R with YgfK and YgfM forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; molybdopterin-containing enzyme; oxidase activity toward hypoxanthine and xanthine can be detected if these substrates are present at high concentration; selenate reductase subunit YgfN complement(2222702..2225572) Photobacterium profundum SS9 3122822 YP_130139.1 CDS PBPRA1933 NC_006370.1 2225575 2226369 R with YgfK and YgfN forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; YgfM contains a FAD domain; selenate reductase subunit YgfM complement(2225575..2226369) Photobacterium profundum SS9 3124232 YP_130140.1 CDS PBPRA1934 NC_006370.1 2227080 2228687 R BCCT family transporter complement(2227080..2228687) Photobacterium profundum SS9 3122375 YP_130141.1 CDS PBPRA1935 NC_006370.1 2229092 2230144 D transposase 2229092..2230144 Photobacterium profundum SS9 3124672 YP_130142.1 CDS PBPRA1936 NC_006370.1 2230616 2231257 R ABC transporter ATP-binding protein complement(2230616..2231257) Photobacterium profundum SS9 3125184 YP_130143.1 CDS PBPRA1937 NC_006370.1 2231630 2233195 D hypothetical protein 2231630..2233195 Photobacterium profundum SS9 3122670 YP_130144.1 CDS PBPRA1938 NC_006370.1 2233577 2234242 D short-chain dehydrogenase 2233577..2234242 Photobacterium profundum SS9 3122442 YP_130145.1 CDS PBPRA1939 NC_006370.1 2234492 2235391 R dehydrogenase complement(2234492..2235391) Photobacterium profundum SS9 3122463 YP_130146.1 CDS PBPRA1940 NC_006370.1 2235385 2235909 R aerobic carbon monoxide dehydrogenase complement(2235385..2235909) Photobacterium profundum SS9 3124546 YP_130147.1 CDS PBPRA1941 NC_006370.1 2235899 2238079 R xanthine dehydrogenase complement(2235899..2238079) Photobacterium profundum SS9 3124467 YP_130148.1 CDS PBPRA1942 NC_006370.1 2238094 2239422 R in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS; chlorohydrolase/aminohydrolase complement(2238094..2239422) Photobacterium profundum SS9 3123349 YP_130149.1 CDS PBPRA1943 NC_006370.1 2239438 2242581 R with YgfM and YgfN forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; YgfK mutants are unable to reduce selenate; involved in purine salvage process; seems to act as an oxidoreductase, but sequence similarity suggests it is a dihydrothymine dehydrogenase; selenate reductase subunit YgfK complement(2239438..2242581) Photobacterium profundum SS9 3122176 YP_130150.1 CDS PBPRA1944 NC_006370.1 2243117 2243365 R hypothetical protein complement(2243117..2243365) Photobacterium profundum SS9 3122454 YP_130151.1 CDS PBPRA1945 NC_006370.1 2243710 2244486 D hypothetical protein 2243710..2244486 Photobacterium profundum SS9 3121976 YP_130152.1 CDS PBPRA1946 NC_006370.1 2245073 2245954 R hypothetical protein complement(2245073..2245954) Photobacterium profundum SS9 3124221 YP_130153.1 CDS PBPRA1947 NC_006370.1 2246044 2246340 R hypothetical protein complement(2246044..2246340) Photobacterium profundum SS9 3125218 YP_130154.1 CDS PBPRA1948 NC_006370.1 2246469 2246789 D hypothetical protein 2246469..2246789 Photobacterium profundum SS9 3122081 YP_130155.1 CDS PBPRA1949 NC_006370.1 2247191 2247913 R pseudouridylate synthase complement(2247191..2247913) Photobacterium profundum SS9 3124494 YP_130156.1 CDS PBPRA1950 NC_006370.1 2248078 2248500 R acetyltransferase complement(2248078..2248500) Photobacterium profundum SS9 3124196 YP_130157.1 CDS PBPRA1951 NC_006370.1 2248632 2249291 R haemagglutinin associated protein complement(2248632..2249291) Photobacterium profundum SS9 3124549 YP_130158.1 CDS PBPRA1952 NC_006370.1 2249441 2249962 R hypothetical protein complement(2249441..2249962) Photobacterium profundum SS9 3124251 YP_130159.1 CDS PBPRA1953 NC_006370.1 2250123 2250476 R hypothetical protein complement(2250123..2250476) Photobacterium profundum SS9 3124388 YP_130160.1 CDS PBPRA1954 NC_006370.1 2250546 2251457 R hypothetical protein complement(2250546..2251457) Photobacterium profundum SS9 3122416 YP_130161.1 CDS PBPRA1955 NC_006370.1 2251464 2252195 R Tn5 transposase complement(2251464..2252195) Photobacterium profundum SS9 3122583 YP_130162.1 CDS PBPRA1956 NC_006370.1 2252343 2253908 R hypothetical protein complement(2252343..2253908) Photobacterium profundum SS9 3122933 YP_130163.1 CDS PBPRA1957 NC_006370.1 2254062 2254433 R transposase complement(2254062..2254433) Photobacterium profundum SS9 3122231 YP_130164.1 CDS acpD NC_006370.1 2254826 2255419 D FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 2254826..2255419 Photobacterium profundum SS9 3122319 YP_130165.1 CDS PBPRA1959 NC_006370.1 2255679 2256155 D hypothetical protein 2255679..2256155 Photobacterium profundum SS9 3122689 YP_130166.1 CDS PBPRA1960 NC_006370.1 2256234 2257598 R hypothetical protein complement(2256234..2257598) Photobacterium profundum SS9 3124907 YP_130167.1 CDS PBPRA1961 NC_006370.1 2257793 2258098 R hypothetical protein complement(2257793..2258098) Photobacterium profundum SS9 3125478 YP_130168.1 CDS PBPRA1962 NC_006370.1 2258626 2258874 D cold shock-like protein cspG 2258626..2258874 Photobacterium profundum SS9 3125185 YP_130169.1 CDS PBPRA1963 NC_006370.1 2259301 2259510 D cold shock-like protein 2259301..2259510 Photobacterium profundum SS9 3122143 YP_130170.1 CDS PBPRA1964 NC_006370.1 2259608 2260534 R D-alanine-D-alanine ligase B complement(2259608..2260534) Photobacterium profundum SS9 3122596 YP_130171.1 CDS PBPRA1965 NC_006370.1 2260798 2261427 R hypothetical protein complement(2260798..2261427) Photobacterium profundum SS9 3122772 YP_130172.1 CDS PBPRA1966 NC_006370.1 2261526 2262041 R hypothetical protein complement(2261526..2262041) Photobacterium profundum SS9 3124194 YP_130173.1 CDS PBPRA1967 NC_006370.1 2262166 2262549 R carboxymuconolactone decarboxylase family protein complement(2262166..2262549) Photobacterium profundum SS9 3124314 YP_130174.1 CDS PBPRA1968 NC_006370.1 2262778 2265927 R hypothetical protein complement(2262778..2265927) Photobacterium profundum SS9 3125172 YP_130175.1 CDS PBPRA1969 NC_006370.1 2266455 2266715 D hypothetical protein 2266455..2266715 Photobacterium profundum SS9 3122123 YP_130176.1 CDS PBPRA1970 NC_006370.1 2266964 2268826 D hypothetical protein 2266964..2268826 Photobacterium profundum SS9 3125453 YP_130177.1 CDS PBPRA1972 NC_006370.1 2269320 2269799 R acetyltransferase complement(2269320..2269799) Photobacterium profundum SS9 3122066 YP_130178.1 CDS PBPRA1973 NC_006370.1 2270743 2272308 D hypothetical protein 2270743..2272308 Photobacterium profundum SS9 3121956 YP_130179.1 CDS PBPRA1974 NC_006370.1 2272318 2272767 R hypothetical protein complement(2272318..2272767) Photobacterium profundum SS9 3122243 YP_130180.1 CDS PBPRA1975 NC_006370.1 2273096 2273701 R oxidoreductase complement(2273096..2273701) Photobacterium profundum SS9 3125375 YP_130181.1 CDS PBPRA1976 NC_006370.1 2273725 2274114 R transcriptional regulator complement(2273725..2274114) Photobacterium profundum SS9 3125469 YP_130182.1 CDS PBPRA1977 NC_006370.1 2274320 2274607 R hypothetical protein complement(2274320..2274607) Photobacterium profundum SS9 3122479 YP_130183.1 CDS PBPRA1978 NC_006370.1 2274730 2275164 R transposase complement(2274730..2275164) Photobacterium profundum SS9 3122731 YP_130184.1 CDS PBPRA1979 NC_006370.1 2275237 2275905 R lysophospholipase complement(2275237..2275905) Photobacterium profundum SS9 3122546 YP_130185.1 CDS PBPRA1980 NC_006370.1 2276061 2276507 D hypothetical protein 2276061..2276507 Photobacterium profundum SS9 3125279 YP_130186.1 CDS PBPRA1981 NC_006370.1 2276625 2276984 R hypothetical protein complement(2276625..2276984) Photobacterium profundum SS9 3122205 YP_130187.1 CDS PBPRA1982 NC_006370.1 2277451 2278329 R hypothetical protein complement(2277451..2278329) Photobacterium profundum SS9 3125248 YP_130188.1 CDS PBPRA1983 NC_006370.1 2278348 2278659 R transcriptional regulator complement(2278348..2278659) Photobacterium profundum SS9 3123828 YP_130189.1 CDS PBPRA1984 NC_006370.1 2279120 2279566 R hypothetical protein complement(2279120..2279566) Photobacterium profundum SS9 3122762 YP_130190.1 CDS PBPRA1985 NC_006370.1 2279625 2281223 R protein yqeB complement(2279625..2281223) Photobacterium profundum SS9 3124891 YP_130191.1 CDS PBPRA1986 NC_006370.1 2281263 2282165 R hypothetical protein complement(2281263..2282165) Photobacterium profundum SS9 3125288 YP_130192.1 CDS PBPRA1987 NC_006370.1 2282226 2282801 D hypothetical protein 2282226..2282801 Photobacterium profundum SS9 3125456 YP_130193.1 CDS PBPRA1988 NC_006370.1 2282995 2286639 R pyruvate oxidoreductase complement(2282995..2286639) Photobacterium profundum SS9 3125310 YP_130194.1 CDS PBPRA1989 NC_006370.1 2286649 2288259 R unknown function; glutamate synthase (NADPH) small subunit complement(2286649..2288259) Photobacterium profundum SS9 3125032 YP_130195.1 CDS PBPRA1990 NC_006370.1 2288439 2289341 R reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase complement(2288439..2289341) Photobacterium profundum SS9 3122715 YP_130196.1 CDS PBPRA1991 NC_006370.1 2289385 2290881 R catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase complement(2289385..2290881) Photobacterium profundum SS9 3125235 YP_130197.1 CDS PBPRA1992 NC_006370.1 2291103 2292320 R Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases; peptidase complement(2291103..2292320) Photobacterium profundum SS9 3125486 YP_130198.1 CDS PBPRA1993 NC_006370.1 2292556 2293758 R catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase complement(2292556..2293758) Photobacterium profundum SS9 3125001 YP_130199.1 CDS PBPRA1994 NC_006370.1 2293833 2295020 R catalyzes the formation of L-citruline from L-ornithine and carbamoylphosphate; aspartate/ornithine carbamoyltransferase complement(2293833..2295020) Photobacterium profundum SS9 3123010 YP_130200.1 CDS PBPRA1995 NC_006370.1 2295444 2297201 D transcriptional regulator 2295444..2297201 Photobacterium profundum SS9 3125284 YP_130201.1 CDS PBPRA1996 NC_006370.1 2297663 2297911 R hypothetical protein complement(2297663..2297911) Photobacterium profundum SS9 3124949 YP_130202.2 CDS PBPRA1997 NC_006370.1 2297827 2299515 D malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 2297827..2299515 Photobacterium profundum SS9 3122794 YP_130203.1 CDS PBPRA1998 NC_006370.1 2299806 2300507 D SanA protein 2299806..2300507 Photobacterium profundum SS9 3124461 YP_130204.1 CDS PBPRA1999 NC_006370.1 2301349 2302719 D NadC family transporter 2301349..2302719 Photobacterium profundum SS9 3123136 YP_130205.1 CDS PBPRA2000 NC_006370.1 2302821 2303804 R oxidoreductase ygjR complement(2302821..2303804) Photobacterium profundum SS9 3125142 YP_130206.1 CDS PBPRA2001 NC_006370.1 2304055 2305131 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis; 3-oxoacyl-ACP synthase 2304055..2305131 Photobacterium profundum SS9 3123683 YP_130207.1 CDS PBPRA2002 NC_006370.1 2305594 2306547 D transmembrane transportprotein 2305594..2306547 Photobacterium profundum SS9 3125426 YP_130208.1 CDS PBPRA2003 NC_006370.1 2306984 2308549 D methyl-accepting chemotaxis protein 2306984..2308549 Photobacterium profundum SS9 3121959 YP_130209.1 CDS PBPRA2004 NC_006370.1 2308683 2310419 R amidase complement(2308683..2310419) Photobacterium profundum SS9 3124402 YP_130210.1 CDS PBPRA2005 NC_006370.1 2310772 2311089 R hemolysin complement(2310772..2311089) Photobacterium profundum SS9 3123629 YP_130211.1 CDS PBPRA2006 NC_006370.1 2311163 2312752 D hypothetical protein 2311163..2312752 Photobacterium profundum SS9 3123653 YP_130212.1 CDS PBPRA2007 NC_006370.1 2312831 2313787 D pyruvate formate lyase activating enzyme 2312831..2313787 Photobacterium profundum SS9 3123804 YP_130213.1 CDS PBPRA2008 NC_006370.1 2313857 2314786 R LysR family transcriptional regulator complement(2313857..2314786) Photobacterium profundum SS9 3122358 YP_130214.1 CDS folE NC_006370.1 2314896 2315549 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(2314896..2315549) Photobacterium profundum SS9 3123025 YP_130215.1 CDS PBPRA2010 NC_006370.1 2315857 2317092 D molybdopterin biosynthesis protein MoeA 2315857..2317092 Photobacterium profundum SS9 3123372 YP_130216.1 CDS PBPRA2011 NC_006370.1 2317264 2318010 D ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 2317264..2318010 Photobacterium profundum SS9 3123173 YP_130217.1 CDS PBPRA2012 NC_006370.1 2318112 2319320 R NupC, nucleoside permease complement(2318112..2319320) Photobacterium profundum SS9 3123589 YP_130218.1 CDS PBPRA2013 NC_006370.1 2319642 2320895 R hypothetical protein complement(2319642..2320895) Photobacterium profundum SS9 3122780 YP_130219.1 CDS PBPRA2014 NC_006370.1 2321156 2322787 R oligopeptide ABC transporter periplasmic oligopeptide-binding protein complement(2321156..2322787) Photobacterium profundum SS9 3124243 YP_130220.1 CDS PBPRA2015 NC_006370.1 2323054 2323896 R hypothetical protein complement(2323054..2323896) Photobacterium profundum SS9 3124235 YP_130221.1 CDS PBPRA2016 NC_006370.1 2324174 2325535 D hypothetical protein 2324174..2325535 Photobacterium profundum SS9 3124151 YP_130222.1 CDS PBPRA2017 NC_006370.1 2325694 2326746 D hypothetical protein 2325694..2326746 Photobacterium profundum SS9 3123910 YP_130223.1 CDS PBPRA2018 NC_006370.1 2327447 2329540 D methyl-accepting chemotaxisprotein 2327447..2329540 Photobacterium profundum SS9 3123726 YP_130224.1 CDS PBPRA2019 NC_006370.1 2330027 2330371 R hypothetical protein complement(2330027..2330371) Photobacterium profundum SS9 3122354 YP_130225.1 CDS PBPRA2020 NC_006370.1 2330713 2332281 D hypothetical protein 2330713..2332281 Photobacterium profundum SS9 3123880 YP_130226.1 CDS PBPRA2021 NC_006370.1 2332560 2333576 D hypothetical protein 2332560..2333576 Photobacterium profundum SS9 3123760 YP_130227.1 CDS PBPRA2022 NC_006370.1 2333736 2334641 R hypothetical protein complement(2333736..2334641) Photobacterium profundum SS9 3123001 YP_130228.1 CDS PBPRA2023 NC_006370.1 2335282 2336337 D tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase 2335282..2336337 Photobacterium profundum SS9 3122576 YP_130229.1 CDS PBPRA2024 NC_006370.1 2336853 2337338 D nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 2336853..2337338 Photobacterium profundum SS9 3123334 YP_130230.1 CDS PBPRA2025 NC_006370.1 2337626 2338291 D hypothetical protein 2337626..2338291 Photobacterium profundum SS9 3122597 YP_130231.1 CDS PBPRA2026 NC_006370.1 2338443 2339288 D pirin 2338443..2339288 Photobacterium profundum SS9 3122172 YP_130232.1 CDS PBPRA2027 NC_006370.1 2339646 2340578 R lipid A biosynthesis lauroylacyltransferase complement(2339646..2340578) Photobacterium profundum SS9 3122131 YP_130233.1 CDS PBPRA2028 NC_006370.1 2340889 2341470 R cytochrome c-type protein NapC complement(2340889..2341470) Photobacterium profundum SS9 3122124 YP_130234.1 CDS PBPRA2029 NC_006370.1 2341484 2341933 R periplasmic nitrate reductase small subunit precursor complement(2341484..2341933) Photobacterium profundum SS9 3122254 YP_130235.1 CDS PBPRA2030 NC_006370.1 2341958 2344474 R periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit complement(2341958..2344474) Photobacterium profundum SS9 3122235 YP_130236.1 CDS PBPRA2031 NC_006370.1 2344937 2345230 D hypothetical protein 2344937..2345230 Photobacterium profundum SS9 3124561 YP_130237.1 CDS PBPRA2032 NC_006370.1 2345331 2346413 D hypothetical protein 2345331..2346413 Photobacterium profundum SS9 3124566 YP_130238.1 CDS PBPRA2033 NC_006370.1 2346568 2346921 R hypothetical protein complement(2346568..2346921) Photobacterium profundum SS9 3124480 YP_130239.1 CDS PBPRA2034 NC_006370.1 2347409 2348080 D hypothetical protein 2347409..2348080 Photobacterium profundum SS9 3124321 YP_130240.1 CDS PBPRA2035 NC_006370.1 2348080 2349915 D molecular chaperone DnaK 2348080..2349915 Photobacterium profundum SS9 3124773 YP_130241.1 CDS PBPRA2036 NC_006370.1 2350117 2353095 D molecular chaperone DnaK 2350117..2353095 Photobacterium profundum SS9 3124789 YP_130242.1 CDS PBPRA2037 NC_006370.1 2353689 2354546 R ABC transporter complement(2353689..2354546) Photobacterium profundum SS9 3124397 YP_130243.1 CDS PBPRA2038 NC_006370.1 2354543 2355400 R ABC transporter ATP-binding protein complement(2354543..2355400) Photobacterium profundum SS9 3124259 YP_130244.1 CDS PBPRA2039 NC_006370.1 2355384 2355767 R GntR family transcriptional regulator complement(2355384..2355767) Photobacterium profundum SS9 3124257 YP_130245.1 CDS PBPRA2040 NC_006370.1 2356253 2356621 R hypothetical protein complement(2356253..2356621) Photobacterium profundum SS9 3124362 YP_130246.1 CDS PBPRA2041 NC_006370.1 2357563 2358084 D transposase 2357563..2358084 Photobacterium profundum SS9 3124146 YP_130247.1 CDS PBPRA2042 NC_006370.1 2358365 2358715 R transposase complement(2358365..2358715) Photobacterium profundum SS9 3124497 YP_130248.1 CDS PBPRA2043 NC_006370.1 2358813 2359247 R transposase complement(2358813..2359247) Photobacterium profundum SS9 3124508 YP_130249.1 CDS PBPRA2045 NC_006370.1 2361060 2361923 D transposase 2361060..2361923 Photobacterium profundum SS9 3123842 YP_130250.1 CDS PBPRA2046 NC_006370.1 2361998 2362609 D ribonuclease 2361998..2362609 Photobacterium profundum SS9 3123016 YP_130251.1 CDS PBPRA2047 NC_006370.1 2363691 2365160 D sodium:alanine symporter family protein 2363691..2365160 Photobacterium profundum SS9 3124867 YP_130252.1 CDS PBPRA2048 NC_006370.1 2365430 2365792 D hypothetical protein 2365430..2365792 Photobacterium profundum SS9 3124603 YP_130253.1 CDS PBPRA2049 NC_006370.1 2365918 2366199 R hypothetical protein complement(2365918..2366199) Photobacterium profundum SS9 3124244 YP_130254.1 CDS PBPRA2050 NC_006370.1 2366486 2366878 D hypothetical protein 2366486..2366878 Photobacterium profundum SS9 3124258 YP_130255.1 CDS PBPRA2051 NC_006370.1 2366970 2367623 R homoserine/homoserine lactoneefflux protein complement(2366970..2367623) Photobacterium profundum SS9 3124462 YP_130256.1 CDS PBPRA2052 NC_006370.1 2368116 2368451 D PTS system, cellobiose-specific IIB component 2368116..2368451 Photobacterium profundum SS9 3123900 YP_130257.1 CDS PBPRA2053 NC_006370.1 2368510 2368791 D hypothetical protein 2368510..2368791 Photobacterium profundum SS9 3124859 YP_130258.1 CDS PBPRA2054 NC_006370.1 2368927 2370123 R transposase complement(2368927..2370123) Photobacterium profundum SS9 3125412 YP_130259.1 CDS PBPRA2055 NC_006370.1 2370645 2372552 D PTS system, fructose-specific IIABC component 2370645..2372552 Photobacterium profundum SS9 3123844 YP_130260.1 CDS PBPRA2056 NC_006370.1 2372675 2373121 R hypothetical protein complement(2372675..2373121) Photobacterium profundum SS9 3123688 YP_130261.1 CDS PBPRA2057 NC_006370.1 2373190 2373669 R hypothetical protein complement(2373190..2373669) Photobacterium profundum SS9 3123855 YP_130262.1 CDS PBPRA2058 NC_006370.1 2373817 2374479 D b-type cytochrome 2373817..2374479 Photobacterium profundum SS9 3125008 YP_130263.1 CDS PBPRA2059 NC_006370.1 2374572 2375006 D transcriptional regulator 2374572..2375006 Photobacterium profundum SS9 3124142 YP_130264.1 CDS PBPRA2060 NC_006370.1 2375163 2375528 D hypothetical protein 2375163..2375528 Photobacterium profundum SS9 3124560 YP_130265.1 CDS PBPRA2061 NC_006370.1 2375691 2376218 D polypeptide deformylase 2375691..2376218 Photobacterium profundum SS9 3124343 YP_130266.1 CDS rihA NC_006370.1 2376433 2377365 D Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1 2376433..2377365 Photobacterium profundum SS9 3124848 YP_130267.1 CDS PBPRA2063 NC_006370.1 2377481 2378026 R hypothetical protein complement(2377481..2378026) Photobacterium profundum SS9 3124889 YP_130268.1 CDS PBPRA2064 NC_006370.1 2378565 2379476 D hypothetical protein 2378565..2379476 Photobacterium profundum SS9 3125011 YP_130269.1 CDS PBPRA2065 NC_006370.1 2379557 2379886 R hypothetical protein complement(2379557..2379886) Photobacterium profundum SS9 3125432 YP_130270.1 CDS PBPRA2066 NC_006370.1 2380038 2380433 R hypothetical protein complement(2380038..2380433) Photobacterium profundum SS9 3122552 YP_130271.1 CDS PBPRA2067 NC_006370.1 2380643 2381257 R phosphatase/phosphohexomutase complement(2380643..2381257) Photobacterium profundum SS9 3122629 YP_130272.1 CDS PBPRA2068 NC_006370.1 2381528 2382424 R hypothetical protein complement(2381528..2382424) Photobacterium profundum SS9 3122811 YP_130273.1 CDS PBPRA2069 NC_006370.1 2382433 2385843 R hypothetical protein complement(2382433..2385843) Photobacterium profundum SS9 3123361 YP_130274.1 CDS PBPRA2070 NC_006370.1 2385836 2386729 R hypothetical protein complement(2385836..2386729) Photobacterium profundum SS9 3123259 YP_130275.1 CDS PBPRA2071 NC_006370.1 2386813 2387292 D hypothetical protein 2386813..2387292 Photobacterium profundum SS9 3123567 YP_130276.1 CDS PBPRA2072 NC_006370.1 2387490 2387813 R hypothetical protein complement(2387490..2387813) Photobacterium profundum SS9 3123917 YP_130277.1 CDS artP NC_006370.1 2387812 2388540 D With ArtMQJI transports arginine across the inner membrane; arginine transporter ATP-binding subunit 2387812..2388540 Photobacterium profundum SS9 3122617 YP_130278.1 CDS PBPRA2074 NC_006370.1 2388682 2389335 D ABC-type amino acid transport/signaltransduction system 2388682..2389335 Photobacterium profundum SS9 3122200 YP_130279.1 CDS PBPRA2075 NC_006370.1 2389337 2390026 D with ArtPMJI transports arginine across the inner membrane; arginine transporter permease subunit ArtQ 2389337..2390026 Photobacterium profundum SS9 3124337 YP_130280.1 CDS artM NC_006370.1 2390023 2390694 D with ArtPQJI acts to transport arginine across the inner membrane; arginine transporter permease subunit ArtM 2390023..2390694 Photobacterium profundum SS9 3122554 YP_130281.1 CDS PBPRA2077 NC_006370.1 2391024 2393027 D methyl-accepting chemotaxis protein 2391024..2393027 Photobacterium profundum SS9 3122543 YP_130282.1 CDS PBPRA2078 NC_006370.1 2393345 2394367 D LacI family transcriptional regulator 2393345..2394367 Photobacterium profundum SS9 3124387 YP_130283.2 CDS galM NC_006370.1 2394450 2395535 R catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose; aldose 1-epimerase complement(2394450..2395535) Photobacterium profundum SS9 3123492 YP_130284.1 CDS PBPRA2080 NC_006370.1 2395560 2396762 R catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase complement(2395560..2396762) Photobacterium profundum SS9 3124176 YP_130285.1 CDS PBPRA2081 NC_006370.1 2396815 2397912 R catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; galactose-1-phosphate uridylyltransferase complement(2396815..2397912) Photobacterium profundum SS9 3124578 YP_130286.1 CDS PBPRA2082 NC_006370.1 2398050 2399060 R UDP-glucose 4-epimerase complement(2398050..2399060) Photobacterium profundum SS9 3123823 YP_130287.1 CDS PBPRA2083 NC_006370.1 2399564 2400541 D DNA-binding transcriptional repressor EbgR 2399564..2400541 Photobacterium profundum SS9 3122974 YP_130288.2 CDS ebgA NC_006370.1 2401002 2404118 D in Escherichia coli this is the second beta-galactosidase system; cryptic beta-D-galactosidase subunit alpha 2401002..2404118 Photobacterium profundum SS9 3122860 YP_130289.1 CDS ebgC NC_006370.1 2404119 2404571 D in Escherichia coli this is the second beta-galactosidase system; cryptic beta-D-galactosidase subunit beta 2404119..2404571 Photobacterium profundum SS9 3123499 YP_130290.1 CDS PBPRA2086 NC_006370.1 2404719 2406143 D oxidoreductase 2404719..2406143 Photobacterium profundum SS9 3122687 YP_130291.1 CDS PBPRA2087 NC_006370.1 2406411 2409572 D hypothetical protein 2406411..2409572 Photobacterium profundum SS9 3123460 YP_130292.1 CDS PBPRA2088 NC_006370.1 2409690 2410040 D hypothetical protein 2409690..2410040 Photobacterium profundum SS9 3122080 YP_130293.1 CDS PBPRA2089 NC_006370.1 2410795 2412018 D sodium/glutamate symporter 2410795..2412018 Photobacterium profundum SS9 3123195 YP_130294.1 CDS PBPRA2090 NC_006370.1 2412301 2412573 D hypothetical protein 2412301..2412573 Photobacterium profundum SS9 3124574 YP_130295.1 CDS PBPRA2091 NC_006370.1 2412794 2413591 D ParA family protein 2412794..2413591 Photobacterium profundum SS9 3124178 YP_130296.1 CDS PBPRA2096 NC_006370.1 2415062 2415595 D transposase 2415062..2415595 Photobacterium profundum SS9 3124344 YP_130297.1 CDS PBPRA2097 NC_006370.1 2415617 2416138 D transposase 2415617..2416138 Photobacterium profundum SS9 3122824 YP_130298.1 CDS PBPRA2098 NC_006370.1 2416171 2417190 D transposase 2416171..2417190 Photobacterium profundum SS9 3122946 YP_130299.1 CDS PBPRA2099 NC_006370.1 2417217 2417462 D hypothetical protein 2417217..2417462 Photobacterium profundum SS9 3124742 YP_130300.1 CDS PBPRA2100 NC_006370.1 2417997 2418554 R HugZ protein complement(2417997..2418554) Photobacterium profundum SS9 3124036 YP_130301.1 CDS PBPRA2101 NC_006370.1 2418674 2419192 R heme iron utilization protein complement(2418674..2419192) Photobacterium profundum SS9 3123623 YP_130302.1 CDS PBPRA2102 NC_006370.1 2419264 2420715 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(2419264..2420715) Photobacterium profundum SS9 3124551 YP_130303.1 CDS PBPRA2103 NC_006370.1 2421178 2421957 D TonB protein 2421178..2421957 Photobacterium profundum SS9 3123131 YP_130304.1 CDS PBPRA2104 NC_006370.1 2421961 2422626 D ExbB-like protein 2421961..2422626 Photobacterium profundum SS9 3122341 YP_130305.1 CDS PBPRA2105 NC_006370.1 2422719 2423042 D ExbD, biopolymer transport protein ExbD/TolR 2422719..2423042 Photobacterium profundum SS9 3122013 YP_130306.1 CDS PBPRA2106 NC_006370.1 2423054 2423911 D hemin ABC transporter periplasmichemin-binding protein HutB 2423054..2423911 Photobacterium profundum SS9 3124731 YP_130307.1 CDS PBPRA2107 NC_006370.1 2423930 2424982 D hemin ABC transporter, permease protein 2423930..2424982 Photobacterium profundum SS9 3125124 YP_130308.1 CDS hmuV NC_006370.1 2424979 2425812 D with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit 2424979..2425812 Photobacterium profundum SS9 3125078 YP_130309.1 CDS PBPRA2109 NC_006370.1 2426254 2427330 D LacI family transcriptional regulator 2426254..2427330 Photobacterium profundum SS9 3123518 YP_130310.1 CDS PBPRA2110 NC_006370.1 2427798 2428388 D hypothetical protein 2427798..2428388 Photobacterium profundum SS9 3123677 YP_130311.1 CDS PBPRA2111 NC_006370.1 2428841 2429194 D hypothetical protein 2428841..2429194 Photobacterium profundum SS9 3123413 YP_130312.1 CDS PBPRA2112 NC_006370.1 2429305 2429904 D hypothetical protein 2429305..2429904 Photobacterium profundum SS9 3123503 YP_130313.1 CDS PBPRA2113 NC_006370.1 2429913 2432132 D hypothetical protein 2429913..2432132 Photobacterium profundum SS9 3123081 YP_130314.1 CDS PBPRA2114 NC_006370.1 2432155 2433363 D ABC transporter solute-binding protein 2432155..2433363 Photobacterium profundum SS9 3123682 YP_130315.1 CDS PBPRA2115 NC_006370.1 2433489 2435246 D hypohetical ABC transporter, permeaseprotein 2433489..2435246 Photobacterium profundum SS9 3122018 YP_130316.1 CDS PBPRA2116 NC_006370.1 2435212 2435871 D ABC-type uncharacterized transport system ATPase component 2435212..2435871 Photobacterium profundum SS9 3125387 YP_130317.1 CDS PBPRA2117 NC_006370.1 2435864 2436493 D phosphatidylglycerophosphate synthase 2435864..2436493 Photobacterium profundum SS9 3124849 YP_130318.1 CDS PBPRA2118 NC_006370.1 2436639 2437706 R alcohol dehydrogenase, zinc-containing complement(2436639..2437706) Photobacterium profundum SS9 3123468 YP_130319.1 CDS PBPRA2119 NC_006370.1 2437895 2438836 D LysR family transcriptional regulator 2437895..2438836 Photobacterium profundum SS9 3122996 YP_130320.1 CDS PBPRA2120 NC_006370.1 2438883 2439785 R DNA-binding transcriptional regulator complement(2438883..2439785) Photobacterium profundum SS9 3122175 YP_130321.1 CDS PBPRA2121 NC_006370.1 2439892 2441100 D uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC 2439892..2441100 Photobacterium profundum SS9 3123130 YP_130322.1 CDS PBPRA2122 NC_006370.1 2441287 2442057 R cyclohexadienyl dehydratase precursor signal peptide protein complement(2441287..2442057) Photobacterium profundum SS9 3123790 YP_130323.1 CDS PBPRA2123 NC_006370.1 2442473 2442871 R outer membrane lipoprotein complement(2442473..2442871) Photobacterium profundum SS9 3121997 YP_130324.1 CDS PBPRA2124 NC_006370.1 2443002 2444282 D hypothetical protein 2443002..2444282 Photobacterium profundum SS9 3122307 YP_130325.1 CDS PBPRA2125 NC_006370.1 2444565 2445086 R TetR family transcriptional regulator complement(2444565..2445086) Photobacterium profundum SS9 3122795 YP_130326.1 CDS PBPRA2126 NC_006370.1 2445375 2446616 D hypothetical protein 2445375..2446616 Photobacterium profundum SS9 3124642 YP_130327.1 CDS PBPRA2127 NC_006370.1 2446619 2446861 D hypothetical protein 2446619..2446861 Photobacterium profundum SS9 3124882 YP_130328.1 CDS PBPRA2128 NC_006370.1 2446916 2447350 R transposase complement(2446916..2447350) Photobacterium profundum SS9 3123745 YP_130329.1 CDS PBPRA2129 NC_006370.1 2447503 2450301 D AcrB/AcrD/AcrF family protein 2447503..2450301 Photobacterium profundum SS9 3122889 YP_130330.1 CDS PBPRA2130 NC_006370.1 2450399 2451541 R hypothetical protein complement(2450399..2451541) Photobacterium profundum SS9 3122645 YP_130331.1 CDS PBPRA2131 NC_006370.1 2451983 2452684 R transcriptional regulator complement(2451983..2452684) Photobacterium profundum SS9 3124808 YP_130332.1 CDS PBPRA2132 NC_006370.1 2453694 2455085 D sodium/alanine symporter 2453694..2455085 Photobacterium profundum SS9 3124890 YP_130333.1 CDS PBPRA2133 NC_006370.1 2455184 2455531 R hypothetical protein complement(2455184..2455531) Photobacterium profundum SS9 3122511 YP_130334.1 CDS PBPRA2134 NC_006370.1 2455559 2455837 D hypothetical protein 2455559..2455837 Photobacterium profundum SS9 3122977 YP_130335.1 CDS PBPRA2135 NC_006370.1 2455907 2456560 R hypothetical protein complement(2455907..2456560) Photobacterium profundum SS9 3121971 YP_130336.1 CDS PBPRA2136 NC_006370.1 2456940 2457248 D hypothetical protein 2456940..2457248 Photobacterium profundum SS9 3125382 YP_130337.1 CDS PBPRA2137 NC_006370.1 2457326 2458678 R chaperone complement(2457326..2458678) Photobacterium profundum SS9 3124525 YP_130338.1 CDS PBPRA2138 NC_006370.1 2458744 2459478 D disulfide oxidoreductase 2458744..2459478 Photobacterium profundum SS9 3124809 YP_130339.1 CDS PBPRA2139 NC_006370.1 2459994 2461076 D hypothetical protein 2459994..2461076 Photobacterium profundum SS9 3123449 YP_130340.1 CDS PBPRA2140 NC_006370.1 2461365 2462369 D major outer membrane protein OmpU 2461365..2462369 Photobacterium profundum SS9 3125250 YP_130341.1 CDS PBPRA2141 NC_006370.1 2462406 2462720 D hypothetical protein 2462406..2462720 Photobacterium profundum SS9 3125385 YP_130342.1 CDS PBPRA2142 NC_006370.1 2462770 2464920 D hypothetical protein 2462770..2464920 Photobacterium profundum SS9 3123348 YP_130343.1 CDS PBPRA2143 NC_006370.1 2464941 2465648 D hypothetical protein 2464941..2465648 Photobacterium profundum SS9 3124983 YP_130344.1 CDS PBPRA2144 NC_006370.1 2466073 2467731 D hypothetical protein 2466073..2467731 Photobacterium profundum SS9 3123836 YP_130345.1 CDS PBPRA2145 NC_006370.1 2468130 2469815 D methyl-accepting chemotaxis protein 2468130..2469815 Photobacterium profundum SS9 3122568 YP_130346.1 CDS PBPRA2146 NC_006370.1 2470000 2471007 D transcriptional regulator 2470000..2471007 Photobacterium profundum SS9 3124975 YP_130347.1 CDS PBPRA2147 NC_006370.1 2471170 2472633 D Na+/H+ antiporter 2471170..2472633 Photobacterium profundum SS9 3122115 YP_130348.1 CDS PBPRA2148 NC_006370.1 2472661 2473830 D PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities 2472661..2473830 Photobacterium profundum SS9 3123021 YP_130349.1 CDS PBPRA2149 NC_006370.1 2474046 2474789 R hypothetical protein complement(2474046..2474789) Photobacterium profundum SS9 3123420 YP_130350.1 CDS PBPRA2150 NC_006370.1 2474920 2475333 R hypothetical protein complement(2474920..2475333) Photobacterium profundum SS9 3123162 YP_130351.1 CDS PBPRA2151 NC_006370.1 2475499 2476260 R ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell; vitamin B12-transporter ATPase complement(2475499..2476260) Photobacterium profundum SS9 3124070 YP_130352.1 CDS PBPRA2152 NC_006370.1 2476287 2477312 R with BtuD and BtuF transports vitamin B12 into the cell; vtamin B12-transporter permease complement(2476287..2477312) Photobacterium profundum SS9 3122853 YP_130353.1 CDS PBPRA2153 NC_006370.1 2477436 2478503 R catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase complement(2477436..2478503) Photobacterium profundum SS9 3124758 YP_130354.1 CDS ihfA NC_006370.1 2478793 2479104 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha complement(2478793..2479104) Photobacterium profundum SS9 3122272 YP_130355.1 CDS pheT NC_006370.1 2479608 2482046 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(2479608..2482046) Photobacterium profundum SS9 3123540 YP_130356.2 CDS pheS NC_006370.1 2482064 2483047 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(2482064..2483047) Photobacterium profundum SS9 3123047 YP_130357.1 CDS rplT NC_006370.1 2483502 2483855 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(2483502..2483855) Photobacterium profundum SS9 3123541 YP_130358.1 CDS PBPRA2158 NC_006370.1 2484189 2484578 R initiation factor IF3 complement(2484189..2484578) Photobacterium profundum SS9 3123490 YP_130359.1 CDS PBPRA2159 NC_006370.1 2484744 2485181 R tRNA synthetase complement(2484744..2485181) Photobacterium profundum SS9 3123894 YP_130360.1 CDS PBPRA2160 NC_006370.1 2485389 2485628 R hypothetical protein complement(2485389..2485628) Photobacterium profundum SS9 3125262 YP_130361.1 CDS PBPRA2161 NC_006370.1 2485697 2486674 R threonyl-tRNA synthetase complement(2485697..2486674) Photobacterium profundum SS9 3124673 YP_130362.1 CDS PBPRA2162 NC_006370.1 2487370 2487849 R hypothetical protein complement(2487370..2487849) Photobacterium profundum SS9 3122783 YP_130363.1 CDS PBPRA2163 NC_006370.1 2487858 2488100 R hypothetical protein complement(2487858..2488100) Photobacterium profundum SS9 3123728 YP_130364.1 CDS PBPRA2164 NC_006370.1 2488133 2488399 D hypothetical protein 2488133..2488399 Photobacterium profundum SS9 3124043 YP_130365.1 CDS PBPRA2166 NC_006370.1 2489605 2489874 R hypothetical protein complement(2489605..2489874) Photobacterium profundum SS9 3124174 YP_130366.1 CDS PBPRA2167 NC_006370.1 2490163 2491620 D hypothetical protein 2490163..2491620 Photobacterium profundum SS9 3122119 YP_130367.1 CDS PBPRA2168 NC_006370.1 2491692 2492027 R hypothetical protein complement(2491692..2492027) Photobacterium profundum SS9 3121966 YP_130368.1 CDS PBPRA2169 NC_006370.1 2492474 2493178 D histidine utilization repressor 2492474..2493178 Photobacterium profundum SS9 3123314 YP_130369.1 CDS PBPRA2170 NC_006370.1 2493429 2494664 D catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 2493429..2494664 Photobacterium profundum SS9 3123031 YP_130370.1 CDS PBPRA2171 NC_006370.1 2494654 2495748 D catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase 2494654..2495748 Photobacterium profundum SS9 3125068 YP_130371.1 CDS PBPRA2172 NC_006370.1 2495827 2497533 D catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 2495827..2497533 Photobacterium profundum SS9 3123994 YP_130372.1 CDS hutH NC_006370.1 2497557 2499089 D catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 2497557..2499089 Photobacterium profundum SS9 3125410 YP_130373.1 CDS PBPRA2174 NC_006370.1 2499372 2500262 D hypothetical protein 2499372..2500262 Photobacterium profundum SS9 3124845 YP_130374.1 CDS PBPRA2175 NC_006370.1 2500597 2501130 D phosphatase 2500597..2501130 Photobacterium profundum SS9 3123368 YP_130375.1 CDS PBPRA2176 NC_006370.1 2502044 2502664 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(2502044..2502664) Photobacterium profundum SS9 3123843 YP_130376.1 CDS PBPRA2177 NC_006370.1 2502823 2504268 R hypothetical protein complement(2502823..2504268) Photobacterium profundum SS9 3122302 YP_130377.1 CDS PBPRA2178 NC_006370.1 2504261 2505046 R DNA-binding response regulator OmpR complement(2504261..2505046) Photobacterium profundum SS9 3124826 YP_130378.1 CDS PBPRA2179 NC_006370.1 2505262 2505534 R hypothetical protein complement(2505262..2505534) Photobacterium profundum SS9 3123044 YP_130379.1 CDS PBPRA2180 NC_006370.1 2506047 2507417 D NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein 2506047..2507417 Photobacterium profundum SS9 3123933 YP_130380.1 CDS PBPRA2181 NC_006370.1 2508155 2509837 D chitinase 2508155..2509837 Photobacterium profundum SS9 3121940 YP_130381.1 CDS PBPRA2182 NC_006370.1 2510778 2513078 D hypothetical protein 2510778..2513078 Photobacterium profundum SS9 3122916 YP_130382.1 CDS PBPRA2184 NC_006370.1 2513978 2514769 D hypothetical protein 2513978..2514769 Photobacterium profundum SS9 3123644 YP_130383.1 CDS PBPRA2185 NC_006370.1 2515378 2516406 D amino acid ABC transporter, periplasmic amino acid-binding protein 2515378..2516406 Photobacterium profundum SS9 3123580 YP_130384.1 CDS PBPRA2186 NC_006370.1 2516494 2517705 D amino acid ABC transporter, permease protein 2516494..2517705 Photobacterium profundum SS9 3122729 YP_130385.1 CDS PBPRA2187 NC_006370.1 2517710 2518807 D ABC-type amino acid transport system, permease component 2517710..2518807 Photobacterium profundum SS9 3122544 YP_130386.1 CDS PBPRA2188 NC_006370.1 2518822 2519646 D amino acid ABC transporter, ATP-binding protein 2518822..2519646 Photobacterium profundum SS9 3124157 YP_130387.1 CDS PBPRA2189 NC_006370.1 2519728 2519997 D hypothetical protein 2519728..2519997 Photobacterium profundum SS9 3122138 YP_130388.1 CDS PBPRA2190 NC_006370.1 2520033 2520698 D carrier/transport protein 2520033..2520698 Photobacterium profundum SS9 3123390 YP_130389.1 CDS PBPRA2191 NC_006370.1 2520795 2521181 D sulfite reductase 2520795..2521181 Photobacterium profundum SS9 3122901 YP_130390.1 CDS PBPRA2192 NC_006370.1 2521310 2521582 R acylphosphatase complement(2521310..2521582) Photobacterium profundum SS9 3123037 YP_130391.1 CDS PBPRA2193 NC_006370.1 2521677 2523077 D methyl-accepting chemotaxis protein 2521677..2523077 Photobacterium profundum SS9 3124905 YP_130392.1 CDS PBPRA2194 NC_006370.1 2523127 2524383 D SAM-dependent methyltransferase 2523127..2524383 Photobacterium profundum SS9 3124748 YP_130393.1 CDS PBPRA2195 NC_006370.1 2524447 2525205 R hypothetical protein complement(2524447..2525205) Photobacterium profundum SS9 3124793 YP_130394.1 CDS PBPRA2196 NC_006370.1 2525494 2526138 D hypothetical protein 2525494..2526138 Photobacterium profundum SS9 3124996 YP_130395.1 CDS PBPRA2197 NC_006370.1 2526216 2527445 R hypothetical protein complement(2526216..2527445) Photobacterium profundum SS9 3122848 YP_130396.1 CDS PBPRA2198 NC_006370.1 2527805 2529625 D chitinase 2527805..2529625 Photobacterium profundum SS9 3123040 YP_130397.1 CDS PBPRA2199 NC_006370.1 2529673 2531052 D hypothetical protein 2529673..2531052 Photobacterium profundum SS9 3124126 YP_130398.1 CDS PBPRA2200 NC_006370.1 2531538 2532155 D hypothetical protein 2531538..2532155 Photobacterium profundum SS9 3124427 YP_130399.1 CDS PBPRA2201 NC_006370.1 2532784 2533905 R alanine dehydrogenase complement(2532784..2533905) Photobacterium profundum SS9 3122323 YP_130400.1 CDS PBPRA2202 NC_006370.1 2534968 2535711 R hypothetical protein complement(2534968..2535711) Photobacterium profundum SS9 3122443 YP_130401.1 CDS PBPRA2203 NC_006370.1 2535767 2536537 R hypothetical protein complement(2535767..2536537) Photobacterium profundum SS9 3123559 YP_130402.1 CDS PBPRA2204 NC_006370.1 2536534 2537742 R hypothetical protein complement(2536534..2537742) Photobacterium profundum SS9 3124430 YP_130403.1 CDS PBPRA2205 NC_006370.1 2538453 2538704 D hypothetical protein 2538453..2538704 Photobacterium profundum SS9 3124914 YP_130404.1 CDS PBPRA2206 NC_006370.1 2538804 2539562 R phosphatase/phosphohexomutase complement(2538804..2539562) Photobacterium profundum SS9 3125290 YP_130405.1 CDS PBPRA2207 NC_006370.1 2539619 2540908 R transporter complement(2539619..2540908) Photobacterium profundum SS9 3124912 YP_130406.1 CDS PBPRA2208 NC_006370.1 2540958 2541977 R catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase complement(2540958..2541977) Photobacterium profundum SS9 3125117 YP_130407.1 CDS PBPRA2209 NC_006370.1 2542170 2542682 R phosphatase complement(2542170..2542682) Photobacterium profundum SS9 3122223 YP_130408.1 CDS PBPRA2210 NC_006370.1 2542749 2543447 R hypothetical protein complement(2542749..2543447) Photobacterium profundum SS9 3122296 YP_130409.1 CDS PBPRA2211 NC_006370.1 2543670 2544827 R hypothetical protein complement(2543670..2544827) Photobacterium profundum SS9 3123703 YP_130410.1 CDS PBPRA2212 NC_006370.1 2545114 2546751 R alcohol dehydrogenase complement(2545114..2546751) Photobacterium profundum SS9 3124339 YP_130411.1 CDS PBPRA2213 NC_006370.1 2547056 2549047 D short chain dehydrogenase 2547056..2549047 Photobacterium profundum SS9 3123093 YP_130412.1 CDS PBPRA2214 NC_006370.1 2549117 2549383 D acyl-CoA-binding protein 2549117..2549383 Photobacterium profundum SS9 3122594 YP_130413.1 CDS PBPRA2215 NC_006370.1 2549506 2551185 R hypothetical protein complement(2549506..2551185) Photobacterium profundum SS9 3122684 YP_130414.1 CDS PBPRA2216 NC_006370.1 2551197 2551553 R hypothetical protein complement(2551197..2551553) Photobacterium profundum SS9 3124502 YP_130415.1 CDS PBPRA2217 NC_006370.1 2551964 2554234 D hypothetical protein 2551964..2554234 Photobacterium profundum SS9 3122976 YP_130416.1 CDS PBPRA2220 NC_006370.1 2555696 2557342 R hypothetical protein complement(2555696..2557342) Photobacterium profundum SS9 3123998 YP_130417.1 CDS PBPRA2222 NC_006370.1 2557966 2558943 D LysR family transcriptional regulator 2557966..2558943 Photobacterium profundum SS9 3124403 YP_130418.1 CDS PBPRA2223 NC_006370.1 2559015 2560706 R L-lactate permease complement(2559015..2560706) Photobacterium profundum SS9 3124650 YP_130419.1 CDS PBPRA2224 NC_006370.1 2561571 2563277 D component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; D-lactate dehydrogenase 2561571..2563277 Photobacterium profundum SS9 3123364 YP_130420.1 CDS PBPRA2228 NC_006370.1 2564783 2565916 R carboxynorspermidine decarboxylase complement(2564783..2565916) Photobacterium profundum SS9 3125069 YP_130421.1 CDS PBPRA2229 NC_006370.1 2565998 2567242 R saccharopine dehydrogenase complement(2565998..2567242) Photobacterium profundum SS9 3124938 YP_130422.1 CDS PBPRA2230 NC_006370.1 2567391 2570276 R diaminobutyrate-pyruvate transaminase & L-2,4-diaminobutyrate decarboxylase complement(2567391..2570276) Photobacterium profundum SS9 3125126 YP_130423.1 CDS PBPRA2231 NC_006370.1 2571438 2572460 D regulatory protein PfoR 2571438..2572460 Photobacterium profundum SS9 3125201 YP_130424.1 CDS PBPRA2236 NC_006370.1 2573340 2573897 R CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase complement(2573340..2573897) Photobacterium profundum SS9 3125180 YP_130425.1 CDS uvrC NC_006370.1 2573956 2575806 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(2573956..2575806) Photobacterium profundum SS9 3125500 YP_130426.1 CDS PBPRA2238 NC_006370.1 2575806 2576450 R in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator complement(2575806..2576450) Photobacterium profundum SS9 3125396 YP_130427.1 CDS PBPRA2239 NC_006370.1 2577347 2577949 D hypothetical protein 2577347..2577949 Photobacterium profundum SS9 3125533 YP_130428.1 CDS PBPRA2240 NC_006370.1 2577953 2579647 D ABC transporter, ATP-binding protein 2577953..2579647 Photobacterium profundum SS9 3125316 YP_130429.1 CDS PBPRA2241 NC_006370.1 2579647 2580486 D ABC transporter, membrane-spanning permease 2579647..2580486 Photobacterium profundum SS9 3124955 YP_130430.1 CDS PBPRA2242 NC_006370.1 2580818 2581564 D GntR family transcriptional regulator 2580818..2581564 Photobacterium profundum SS9 3122046 YP_130431.1 CDS PBPRA2243 NC_006370.1 2582332 2583780 D xanthine dehydrogenase, XdhA subunit 2582332..2583780 Photobacterium profundum SS9 3125132 YP_130432.1 CDS PBPRA2244 NC_006370.1 2583773 2586175 D xanthine dehydrogenase, XdhB subunit 2583773..2586175 Photobacterium profundum SS9 3124637 YP_130433.1 CDS PBPRA2245 NC_006370.1 2586199 2587032 D xanthine dehydrogenase accessory factor XdhC 2586199..2587032 Photobacterium profundum SS9 3125053 YP_130434.1 CDS PBPRA2246 NC_006370.1 2587059 2588396 D Catalyzes the deamination of guanine; guanine deaminase 2587059..2588396 Photobacterium profundum SS9 3125447 YP_130435.1 CDS PBPRA2247 NC_006370.1 2588482 2588808 D hypothetical protein 2588482..2588808 Photobacterium profundum SS9 3124580 YP_130436.1 CDS PBPRA2248 NC_006370.1 2589006 2589272 R hypothetical protein complement(2589006..2589272) Photobacterium profundum SS9 3124715 YP_130437.1 CDS PBPRA2249 NC_006370.1 2589659 2589964 D merR protein 2589659..2589964 Photobacterium profundum SS9 3121946 YP_130438.1 CDS PBPRA2250 NC_006370.1 2591375 2592115 D RepE; RepFIB; replication protein 2591375..2592115 Photobacterium profundum SS9 3124698 YP_130439.1 CDS PBPRA2251 NC_006370.1 2592300 2593784 D ABC transporter periplasmic solute-binding protein 2592300..2593784 Photobacterium profundum SS9 3124588 YP_130440.1 CDS PBPRA2252 NC_006370.1 2593888 2594853 D ABC transporter permease 2593888..2594853 Photobacterium profundum SS9 3122037 YP_130441.1 CDS PBPRA2253 NC_006370.1 2594855 2595715 D ABC transporter permease 2594855..2595715 Photobacterium profundum SS9 3122284 YP_130442.1 CDS PBPRA2254 NC_006370.1 2595726 2597384 D oligopeptide transport ATP-binding protein 2595726..2597384 Photobacterium profundum SS9 3122055 YP_130443.1 CDS lamB NC_006370.1 2598612 2599877 D porin involved in the transport of maltose and maltodextrins; maltoporin 2598612..2599877 Photobacterium profundum SS9 3122555 YP_130444.1 CDS PBPRA2256 NC_006370.1 2599898 2600731 D maltose operon periplasmic protein 2599898..2600731 Photobacterium profundum SS9 3122398 YP_130445.1 CDS PBPRA2257 NC_006370.1 2600886 2601248 D hypothetical protein 2600886..2601248 Photobacterium profundum SS9 3121979 YP_130446.1 CDS PBPRA2258 NC_006370.1 2601378 2601944 R hypothetical protein complement(2601378..2601944) Photobacterium profundum SS9 3122149 YP_130447.1 CDS PBPRA2259 NC_006370.1 2602174 2603400 R hypothetical protein complement(2602174..2603400) Photobacterium profundum SS9 3122497 YP_130448.1 CDS PBPRA2260 NC_006370.1 2603555 2604154 R catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase complement(2603555..2604154) Photobacterium profundum SS9 3122611 YP_130449.1 CDS PBPRA2261 NC_006370.1 2604349 2605341 R catalyzes the formation of S-ureidoglycolate and urea from allantoate; allantoicase complement(2604349..2605341) Photobacterium profundum SS9 3125523 YP_130450.1 CDS PBPRA2262 NC_006370.1 2605439 2605954 R hypothetical protein complement(2605439..2605954) Photobacterium profundum SS9 3122316 YP_130451.1 CDS PBPRA2263 NC_006370.1 2605957 2606880 R polysaccharide deacetylase family protein complement(2605957..2606880) Photobacterium profundum SS9 3122757 YP_130452.1 CDS PBPRA2264 NC_006370.1 2607259 2607612 D transthyretin family protein 2607259..2607612 Photobacterium profundum SS9 3122415 YP_130453.1 CDS PBPRA2265 NC_006370.1 2607860 2609209 D transporter 2607860..2609209 Photobacterium profundum SS9 3122508 YP_130454.1 CDS PBPRA2266 NC_006370.1 2609434 2610840 D xanthine/uracil permease 2609434..2610840 Photobacterium profundum SS9 3122655 YP_130455.1 CDS PBPRA2267 NC_006370.1 2611028 2612392 D catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway.; hydroxydechloroatrazine ethylaminohydrolase 2611028..2612392 Photobacterium profundum SS9 3122820 YP_130456.1 CDS PBPRA2268 NC_006370.1 2612565 2613173 R transcriptional regulator complement(2612565..2613173) Photobacterium profundum SS9 3122720 YP_130457.1 CDS PBPRA2269 NC_006370.1 2613710 2614816 D alpha/beta hydrolase 2613710..2614816 Photobacterium profundum SS9 3122448 YP_130458.1 CDS PBPRA2270 NC_006370.1 2614922 2615356 R transposase complement(2614922..2615356) Photobacterium profundum SS9 3122440 YP_130459.1 CDS PBPRA2271 NC_006370.1 2615511 2615873 R hypothetical protein complement(2615511..2615873) Photobacterium profundum SS9 3122700 YP_130460.1 CDS PBPRA2272 NC_006370.1 2615973 2617280 R hydroxypyruvate reductase complement(2615973..2617280) Photobacterium profundum SS9 3123113 YP_130461.1 CDS PBPRA2273 NC_006370.1 2617611 2618498 R oxidoreductase complement(2617611..2618498) Photobacterium profundum SS9 3122823 YP_130462.1 CDS PBPRA2274 NC_006370.1 2618510 2619307 R hydroxypyruvate isomerase complement(2618510..2619307) Photobacterium profundum SS9 3122900 YP_130463.2 CDS PBPRA2275 NC_006370.1 2619323 2621098 R catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase complement(2619323..2621098) Photobacterium profundum SS9 3122472 YP_130464.1 CDS PBPRA2276 NC_006370.1 2621419 2623065 D Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 2621419..2623065 Photobacterium profundum SS9 3122788 YP_130465.1 CDS PBPRA2277 NC_006370.1 2623109 2623531 D hypothetical protein 2623109..2623531 Photobacterium profundum SS9 3122965 YP_130466.1 CDS PBPRA2278 NC_006370.1 2623808 2624098 D hypothetical protein 2623808..2624098 Photobacterium profundum SS9 3123082 YP_130467.1 CDS PBPRA2279 NC_006370.1 2624252 2625535 R TRAP-type C4-dicarboxylate transport system, large permease component complement(2624252..2625535) Photobacterium profundum SS9 3123274 YP_130468.1 CDS PBPRA2280 NC_006370.1 2625545 2626057 R TRAP-type C4-dicarboxylate transport system, small permease component complement(2625545..2626057) Photobacterium profundum SS9 3123432 YP_130469.1 CDS PBPRA2281 NC_006370.1 2626152 2627120 R TRAP-type C4-dicarboxylate transport system, periplasmic component complement(2626152..2627120) Photobacterium profundum SS9 3123117 YP_130470.1 CDS PBPRA2282 NC_006370.1 2627566 2628057 R hypothetical protein complement(2627566..2628057) Photobacterium profundum SS9 3122980 YP_130471.1 CDS PBPRA2283 NC_006370.1 2628145 2629635 R sodium/glucose cotransporter complement(2628145..2629635) Photobacterium profundum SS9 3123440 YP_130472.1 CDS PBPRA2284 NC_006370.1 2629739 2630617 R catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein; N-acetylmannosamine kinase complement(2629739..2630617) Photobacterium profundum SS9 3123290 YP_130473.1 CDS PBPRA2285 NC_006370.1 2630614 2631321 R Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase complement(2630614..2631321) Photobacterium profundum SS9 3123421 YP_130474.1 CDS PBPRA2286 NC_006370.1 2631912 2632784 R rpiR family transcriptional regulatory protein complement(2631912..2632784) Photobacterium profundum SS9 3123164 YP_130475.1 CDS PBPRA2287 NC_006370.1 2633155 2634051 D N-acetylneuraminate lyase 2633155..2634051 Photobacterium profundum SS9 3125287 YP_130476.1 CDS PBPRA2288 NC_006370.1 2634669 2637323 D ToxR-regulated lipoprotein 2634669..2637323 Photobacterium profundum SS9 3123110 YP_130477.1 CDS PBPRA2289 NC_006370.1 2637837 2638661 R hypothetical protein complement(2637837..2638661) Photobacterium profundum SS9 3123383 YP_130478.1 CDS PBPRA2290 NC_006370.1 2638738 2639682 R triphosphoribosyl-dephospho-CoA synthase complement(2638738..2639682) Photobacterium profundum SS9 3123238 YP_130479.1 CDS PBPRA2291 NC_006370.1 2639675 2640202 R apo-citrate lyase phosphoribosyl-dephospho-CoA transferase complement(2639675..2640202) Photobacterium profundum SS9 3123317 YP_130480.1 CDS PBPRA2292 NC_006370.1 2640199 2641725 R citrate lyase, alpha subunit complement(2640199..2641725) Photobacterium profundum SS9 3123431 YP_130481.1 CDS PBPRA2293 NC_006370.1 2641735 2642625 R citrate lyase, beta subunit complement(2641735..2642625) Photobacterium profundum SS9 3123649 YP_130482.1 CDS PBPRA2294 NC_006370.1 2642617 2642931 D hypothetical protein 2642617..2642931 Photobacterium profundum SS9 3125539 YP_130483.1 CDS PBPRA2295 NC_006370.1 2642978 2644096 R citrate (pro-3S)-lyase ligase complement(2642978..2644096) Photobacterium profundum SS9 3125404 YP_130484.1 CDS PBPRA2296 NC_006370.1 2644285 2645628 D citrate-sodium symporter 2644285..2645628 Photobacterium profundum SS9 3123599 YP_130485.1 CDS PBPRA2297 NC_006370.1 2645629 2645895 R hypothetical protein complement(2645629..2645895) Photobacterium profundum SS9 3123643 YP_130486.1 CDS PBPRA2298 NC_006370.1 2645972 2647762 D catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 2645972..2647762 Photobacterium profundum SS9 3123765 YP_130487.1 CDS PBPRA2299 NC_006370.1 2647780 2649081 D oxaloacetate decarboxylase, beta subunit 2647780..2649081 Photobacterium profundum SS9 3123967 YP_130488.1 CDS PBPRA2300 NC_006370.1 2649193 2650845 D sensor kinase citA 2649193..2650845 Photobacterium profundum SS9 3124966 YP_130489.1 CDS PBPRA2301 NC_006370.1 2650847 2651509 D transcriptional regulator CitB 2650847..2651509 Photobacterium profundum SS9 3123534 YP_130490.1 CDS PBPRA2302 NC_006370.1 2651521 2651907 D hypothetical protein 2651521..2651907 Photobacterium profundum SS9 3123685 YP_130491.1 CDS PBPRA2303 NC_006370.1 2651947 2653593 R hemolysin secretion protein HylB complement(2651947..2653593) Photobacterium profundum SS9 3125323 YP_130492.1 CDS PBPRA2304 NC_006370.1 2654042 2654386 R hypothetical protein complement(2654042..2654386) Photobacterium profundum SS9 3124261 YP_130493.1 CDS PBPRA2306 NC_006370.1 2655037 2655372 D hypothetical protein 2655037..2655372 Photobacterium profundum SS9 3124509 YP_130494.1 CDS PBPRA2307 NC_006370.1 2655404 2656309 R DMT family permease complement(2655404..2656309) Photobacterium profundum SS9 3122784 YP_130495.1 CDS PBPRA2308 NC_006370.1 2656462 2657913 D transcriptional regulator 2656462..2657913 Photobacterium profundum SS9 3122627 YP_130496.1 CDS PBPRA2309 NC_006370.1 2658011 2658856 R hypothetical protein complement(2658011..2658856) Photobacterium profundum SS9 3123447 YP_130497.1 CDS PBPRA2310 NC_006370.1 2658940 2659374 R transposase complement(2658940..2659374) Photobacterium profundum SS9 3124703 YP_130498.1 CDS PBPRA2311 NC_006370.1 2660450 2661574 R transmembrane protein complement(2660450..2661574) Photobacterium profundum SS9 3123308 YP_130499.1 CDS PBPRA2312 NC_006370.1 2661574 2662608 R ABC-type multidrug transport system, ATPase component complement(2661574..2662608) Photobacterium profundum SS9 3122814 YP_130500.1 CDS PBPRA2313 NC_006370.1 2662532 2663494 R hypothetical protein complement(2662532..2663494) Photobacterium profundum SS9 3123673 YP_130501.1 CDS PBPRA2314 NC_006370.1 2663695 2665305 R FAD-dependent dehydrogenase complement(2663695..2665305) Photobacterium profundum SS9 3124607 YP_130502.1 CDS PBPRA2315 NC_006370.1 2665456 2665620 D hypothetical protein 2665456..2665620 Photobacterium profundum SS9 3124875 YP_130503.1 CDS PBPRA2316 NC_006370.1 2665721 2666011 D hypothetical protein 2665721..2666011 Photobacterium profundum SS9 3122107 YP_130504.1 CDS PBPRA2317 NC_006370.1 2666099 2666461 R hypothetical protein complement(2666099..2666461) Photobacterium profundum SS9 3122414 YP_130505.1 CDS PBPRA2318 NC_006370.1 2666739 2669843 R AcrB/D/F family transporter complement(2666739..2669843) Photobacterium profundum SS9 3122741 YP_130506.1 CDS PBPRA2319 NC_006370.1 2669844 2670971 R membrane-fusion protein complement(2669844..2670971) Photobacterium profundum SS9 3123257 YP_130507.1 CDS PBPRA2320 NC_006370.1 2671113 2672048 D LysR family transcriptional regulator 2671113..2672048 Photobacterium profundum SS9 3121988 YP_130508.1 CDS PBPRA2321 NC_006370.1 2672450 2673688 D MFS transporter 2672450..2673688 Photobacterium profundum SS9 3121992 YP_130509.1 CDS PBPRA2322 NC_006370.1 2673837 2674736 R metalloprotease; heat shock protein HtpX complement(2673837..2674736) Photobacterium profundum SS9 3124708 YP_130510.1 CDS PBPRA2323 NC_006370.1 2675371 2675652 D sulfate permease 2675371..2675652 Photobacterium profundum SS9 3122202 YP_130511.1 CDS PBPRA2324 NC_006370.1 2675786 2676847 D sulfate permease 2675786..2676847 Photobacterium profundum SS9 3122206 YP_130512.1 CDS PBPRA2325 NC_006370.1 2676923 2677696 D hypothetical protein 2676923..2677696 Photobacterium profundum SS9 3122180 YP_130513.1 CDS bioD NC_006370.1 2678676 2679338 R DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase complement(2678676..2679338) Photobacterium profundum SS9 3122210 YP_130514.1 CDS PBPRA2327 NC_006370.1 2679331 2680170 R biotin synthesis protein BioC complement(2679331..2680170) Photobacterium profundum SS9 3122038 YP_130515.1 CDS PBPRA2328 NC_006370.1 2680160 2681386 R catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase complement(2680160..2681386) Photobacterium profundum SS9 3122067 YP_130516.1 CDS PBPRA2329 NC_006370.1 2681325 2682377 R biotin synthase complement(2681325..2682377) Photobacterium profundum SS9 3125388 YP_130517.1 CDS PBPRA2330 NC_006370.1 2682530 2683816 D catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 2682530..2683816 Photobacterium profundum SS9 3124720 YP_130518.1 CDS PBPRA2331 NC_006370.1 2683994 2684560 D hypothetical protein 2683994..2684560 Photobacterium profundum SS9 3124796 YP_130519.1 CDS PBPRA2332 NC_006370.1 2684635 2685849 R ROK family transcriptional regulator complement(2684635..2685849) Photobacterium profundum SS9 3122251 YP_130520.1 CDS PBPRA2333 NC_006370.1 2686131 2686799 D organic radical activating enzyme 2686131..2686799 Photobacterium profundum SS9 3122048 YP_130521.1 CDS PBPRA2334 NC_006370.1 2687096 2689936 D hyothetical protein 2687096..2689936 Photobacterium profundum SS9 3122338 YP_130522.1 CDS asnC NC_006370.1 2690272 2691672 D catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 2690272..2691672 Photobacterium profundum SS9 3122304 YP_130523.1 CDS PBPRA2336 NC_006370.1 2691937 2693112 R Na(+)/H(+)-dicarboxylate symporter complement(2691937..2693112) Photobacterium profundum SS9 3122290 YP_130524.1 CDS PBPRA2337 NC_006370.1 2694009 2694833 D catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase 2694009..2694833 Photobacterium profundum SS9 3124385 YP_130525.1 CDS PBPRA2338 NC_006370.1 2695060 2695530 R hypothetical protein complement(2695060..2695530) Photobacterium profundum SS9 3122620 YP_130526.1 CDS PBPRA2339 NC_006370.1 2695892 2696668 D enoyl-CoA hydratase 2695892..2696668 Photobacterium profundum SS9 3123573 YP_130527.1 CDS PBPRA2340 NC_006370.1 2696791 2698197 R transport protein complement(2696791..2698197) Photobacterium profundum SS9 3123462 YP_130528.1 CDS PBPRA2341 NC_006370.1 2698703 2699893 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2698703..2699893 Photobacterium profundum SS9 3123425 YP_130529.1 CDS PBPRA2342 NC_006370.1 2700020 2700325 R hypothetical protein complement(2700020..2700325) Photobacterium profundum SS9 3123120 YP_130530.1 CDS PBPRA2343 NC_006370.1 2700647 2701057 R hypothetical protein complement(2700647..2701057) Photobacterium profundum SS9 3122737 YP_130531.1 CDS PBPRA2344 NC_006370.1 2701562 2702227 D hypothetical protein 2701562..2702227 Photobacterium profundum SS9 3122664 YP_130532.1 CDS PBPRA2345 NC_006370.1 2702270 2703607 R membrane protein regulates uhpT expression; regulatory protein UhpC complement(2702270..2703607) Photobacterium profundum SS9 3122015 YP_130533.1 CDS PBPRA2346 NC_006370.1 2703673 2705268 R Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph; sensory histidine kinase UhpB complement(2703673..2705268) Photobacterium profundum SS9 3122188 YP_130534.1 CDS PBPRA2347 NC_006370.1 2705268 2705963 R LuxR family transcriptional regulator complement(2705268..2705963) Photobacterium profundum SS9 3124017 YP_130535.2 CDS uhpT NC_006370.1 2706096 2707496 R cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate; sugar phosphate antiporter complement(2706096..2707496) Photobacterium profundum SS9 3122563 YP_130536.1 CDS PBPRA2349 NC_006370.1 2707938 2708648 R glyoxylase II family protein complement(2707938..2708648) Photobacterium profundum SS9 3124373 YP_130537.1 CDS PBPRA2350 NC_006370.1 2708832 2709380 R hypothetical protein complement(2708832..2709380) Photobacterium profundum SS9 3122388 YP_130538.1 CDS PBPRA2351 NC_006370.1 2709534 2711252 R hypothetical protein complement(2709534..2711252) Photobacterium profundum SS9 3122435 YP_130539.1 CDS PBPRA2352 NC_006370.1 2711766 2712260 D MarR family transcriptional regulator 2711766..2712260 Photobacterium profundum SS9 3123118 YP_130540.1 CDS PBPRA2353 NC_006370.1 2712463 2713320 D LysR family transcriptional regulator 2712463..2713320 Photobacterium profundum SS9 3124004 YP_130541.1 CDS PBPRA2354 NC_006370.1 2713280 2714050 R hypothetical protein complement(2713280..2714050) Photobacterium profundum SS9 3123281 YP_130542.1 CDS PBPRA2355 NC_006370.1 2714241 2715194 R LysR family transcriptional regulator complement(2714241..2715194) Photobacterium profundum SS9 3124559 YP_130543.1 CDS PBPRA2356 NC_006370.1 2715349 2716029 D aspartate racemase 2715349..2716029 Photobacterium profundum SS9 3124273 YP_130544.1 CDS PBPRA2357 NC_006370.1 2716527 2718110 D L-lactate permease, LctP 2716527..2718110 Photobacterium profundum SS9 3123273 YP_130545.1 CDS PBPRA2358 NC_006370.1 2718262 2718981 D dehydrogenase subunit 2718262..2718981 Photobacterium profundum SS9 3124878 YP_130546.1 CDS PBPRA2359 NC_006370.1 2718994 2720403 D electron transport protein ykgF 2718994..2720403 Photobacterium profundum SS9 3122229 YP_130547.1 CDS PBPRA2360 NC_006370.1 2720421 2721167 D hypothetical protein 2720421..2721167 Photobacterium profundum SS9 3123948 YP_130548.1 CDS PBPRA2361 NC_006370.1 2721306 2722211 D LysR family transcriptional regulator 2721306..2722211 Photobacterium profundum SS9 3121945 YP_130549.1 CDS PBPRA2362 NC_006370.1 2722284 2722766 R hypothetical protein complement(2722284..2722766) Photobacterium profundum SS9 3125295 YP_130550.1 CDS PBPRA2363 NC_006370.1 2722901 2725378 R trimethylamine-N-oxide reductase complement(2722901..2725378) Photobacterium profundum SS9 3123125 YP_130551.1 CDS PBPRA2364 NC_006370.1 2725450 2726634 R cytochrome c-type protein TorC complement(2725450..2726634) Photobacterium profundum SS9 3123928 YP_130552.1 CDS PBPRA2365 NC_006370.1 2727281 2728585 D hypothetical protein 2727281..2728585 Photobacterium profundum SS9 3122659 YP_130553.1 CDS PBPRA2366 NC_006370.1 2728745 2729650 R hypothetical protein complement(2728745..2729650) Photobacterium profundum SS9 3125484 YP_130554.1 CDS PBPRA2367 NC_006370.1 2729900 2730934 R hypothetical protein complement(2729900..2730934) Photobacterium profundum SS9 3124751 YP_130555.1 CDS PBPRA2368 NC_006370.1 2731477 2732046 R hypothetical protein complement(2731477..2732046) Photobacterium profundum SS9 3124822 YP_130556.1 CDS PBPRA2369 NC_006370.1 2734240 2735256 R transposase complement(2734240..2735256) Photobacterium profundum SS9 3125360 YP_130557.1 CDS PBPRA2370 NC_006370.1 2735423 2735944 D transposase 2735423..2735944 Photobacterium profundum SS9 3124884 YP_130558.1 CDS PBPRA2371 NC_006370.1 2735977 2736996 D transposase 2735977..2736996 Photobacterium profundum SS9 3124490 YP_130559.1 CDS PBPRA2372 NC_006370.1 2737062 2737532 D transposase and inactivated derivative 2737062..2737532 Photobacterium profundum SS9 3122725 YP_130560.1 CDS PBPRA2373 NC_006370.1 2737534 2737971 D transposase and inactivated derivative 2737534..2737971 Photobacterium profundum SS9 3123488 YP_130561.1 CDS PBPRA2374 NC_006370.1 2738310 2738657 D transposase 2738310..2738657 Photobacterium profundum SS9 3123955 YP_130562.1 CDS PBPRA2375 NC_006370.1 2738767 2740311 D hypothetical protein 2738767..2740311 Photobacterium profundum SS9 3125514 YP_130563.1 CDS mukB NC_006370.1 2741041 2745501 R SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; cell division protein MukB complement(2741041..2745501) Photobacterium profundum SS9 3123345 YP_130564.1 CDS PBPRA2377 NC_006370.1 2745501 2746292 R acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; condesin subunit E complement(2745501..2746292) Photobacterium profundum SS9 3122932 YP_130565.1 CDS PBPRA2378 NC_006370.1 2746216 2747538 R acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; condesin subunit F complement(2746216..2747538) Photobacterium profundum SS9 3124981 YP_130566.1 CDS PBPRA2379 NC_006370.1 2747607 2748419 R involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens; expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc; NO elicits release of Zn ions from SmtA; metallothionein SmtA complement(2747607..2748419) Photobacterium profundum SS9 3124872 YP_130567.1 CDS PBPRA2380 NC_006370.1 2748542 2749396 D hypothetical protein 2748542..2749396 Photobacterium profundum SS9 3122260 YP_130568.1 CDS PBPRA2381 NC_006370.1 2749728 2751125 D sodium/dicarboxylate symporter 2749728..2751125 Photobacterium profundum SS9 3122425 YP_130569.1 CDS PBPRA2382 NC_006370.1 2751275 2752021 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(2751275..2752021) Photobacterium profundum SS9 3122789 YP_130570.1 CDS PBPRA2383 NC_006370.1 2752021 2752200 R hypothetical protein complement(2752021..2752200) Photobacterium profundum SS9 3125177 YP_130571.1 CDS lpxK NC_006370.1 2752181 2753215 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(2752181..2753215) Photobacterium profundum SS9 3123235 YP_130572.1 CDS PBPRA2385 NC_006370.1 2753215 2754972 R involved in the transport of lipid A across the inner membrane; lipid transporter ATP-binding/permease protein complement(2753215..2754972) Photobacterium profundum SS9 3123201 YP_130573.1 CDS PBPRA2386 NC_006370.1 2755159 2757573 R Rec2-like protein complement(2755159..2757573) Photobacterium profundum SS9 3122967 YP_130574.1 CDS PBPRA2387 NC_006370.1 2757690 2758202 D hypothetical protein 2757690..2758202 Photobacterium profundum SS9 3123453 YP_130575.1 CDS PBPRA2388 NC_006370.1 2758511 2759755 R part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolE complement(2758511..2759755) Photobacterium profundum SS9 3122572 YP_130576.1 CDS PBPRA2389 NC_006370.1 2759755 2760504 R ABC transporter ATP-binding protein complement(2759755..2760504) Photobacterium profundum SS9 3124806 YP_130577.1 CDS PBPRA2390 NC_006370.1 2760437 2761645 R ABC transporter integral membrane subunit complement(2760437..2761645) Photobacterium profundum SS9 3122540 YP_130578.1 CDS PBPRA2391 NC_006370.1 2761894 2762490 D hypothetical protein 2761894..2762490 Photobacterium profundum SS9 3123476 YP_130579.1 CDS PBPRA2392 NC_006370.1 2762500 2765955 D transcription-repair coupling factor 2762500..2765955 Photobacterium profundum SS9 3124740 YP_130580.1 CDS PBPRA2393 NC_006370.1 2766044 2766940 D hypothetical protein 2766044..2766940 Photobacterium profundum SS9 3125146 YP_130581.1 CDS PBPRA2394 NC_006370.1 2767128 2767685 D ribosomal-protein-serine acetyltransferase 2767128..2767685 Photobacterium profundum SS9 3124901 YP_130582.1 CDS PBPRA2395 NC_006370.1 2767729 2768202 D peptidyl-prolyl cis-trans isomerase, FKBP-type 2767729..2768202 Photobacterium profundum SS9 3122033 YP_130583.1 CDS PBPRA2396 NC_006370.1 2768521 2769810 R NADH dehydrogenase complement(2768521..2769810) Photobacterium profundum SS9 3122681 YP_130584.1 CDS PBPRA2397 NC_006370.1 2769911 2770447 R hypothetical protein complement(2769911..2770447) Photobacterium profundum SS9 3125049 YP_130585.1 CDS PBPRA2399 NC_006370.1 2771519 2772451 R hypothetical protein complement(2771519..2772451) Photobacterium profundum SS9 3123393 YP_130586.1 CDS PBPRA2400 NC_006370.1 2772559 2773152 R hypothetical protein complement(2772559..2773152) Photobacterium profundum SS9 3122960 YP_130587.1 CDS PBPRA2401 NC_006370.1 2773176 2773562 R hypothetical protein complement(2773176..2773562) Photobacterium profundum SS9 3122160 YP_130588.1 CDS PBPRA2402 NC_006370.1 2773562 2774962 R hypothetical protein complement(2773562..2774962) Photobacterium profundum SS9 3122419 YP_130589.1 CDS PBPRA2403 NC_006370.1 2775127 2775477 R Hit family diadenosine tetraphosphate hydrolase complement(2775127..2775477) Photobacterium profundum SS9 3123233 YP_130590.1 CDS PBPRA2404 NC_006370.1 2775863 2777866 D methyl-accepting chemotaxis protein 2775863..2777866 Photobacterium profundum SS9 3124904 YP_130591.1 CDS PBPRA2405 NC_006370.1 2778105 2779133 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 2778105..2779133 Photobacterium profundum SS9 3123036 YP_130592.1 CDS PBPRA2406 NC_006370.1 2779283 2782351 R AcrB, cation/multidrug efflux pump complement(2779283..2782351) Photobacterium profundum SS9 3123050 YP_130593.1 CDS PBPRA2407 NC_006370.1 2782351 2783439 R periplasmic linker protein complement(2782351..2783439) Photobacterium profundum SS9 3125074 YP_130594.1 CDS PBPRA2408 NC_006370.1 2783441 2784475 R hypothetical protein complement(2783441..2784475) Photobacterium profundum SS9 3125495 YP_130595.1 CDS PBPRA2409 NC_006370.1 2784820 2786328 R fumarate hydratase, class I complement(2784820..2786328) Photobacterium profundum SS9 3124008 YP_130596.1 CDS PBPRA2410 NC_006370.1 2786644 2788047 D catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; para-aminobenzoate synthase component I 2786644..2788047 Photobacterium profundum SS9 3124836 YP_130597.1 CDS PBPRA2411 NC_006370.1 2788160 2788759 D MutT/nudix family protein 2788160..2788759 Photobacterium profundum SS9 3125328 YP_130598.1 CDS PBPRA2412 NC_006370.1 2788951 2790204 D serine transporter 2788951..2790204 Photobacterium profundum SS9 3123877 YP_130599.1 CDS PBPRA2413 NC_006370.1 2790449 2791810 D L-serine dehydratase 1 2790449..2791810 Photobacterium profundum SS9 3123450 YP_130600.1 CDS PBPRA2414 NC_006370.1 2791925 2792887 R hypothetical protein complement(2791925..2792887) Photobacterium profundum SS9 3122116 YP_130601.1 CDS PBPRA2415 NC_006370.1 2793360 2793953 R hypothetical protein complement(2793360..2793953) Photobacterium profundum SS9 3123735 YP_130602.1 CDS PBPRA2416 NC_006370.1 2794410 2795618 R hypothetical protein complement(2794410..2795618) Photobacterium profundum SS9 3124535 YP_130603.1 CDS PBPRA2417 NC_006370.1 2795773 2796504 R NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds; nitroreductase A complement(2795773..2796504) Photobacterium profundum SS9 3122914 YP_130604.1 CDS PBPRA2418 NC_006370.1 2796694 2797902 R iron-containing alcohol dehydrogenase complement(2796694..2797902) Photobacterium profundum SS9 3122897 YP_130605.2 CDS grxA NC_006370.1 2798559 2798822 D functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 1 2798559..2798822 Photobacterium profundum SS9 3122600 YP_130606.1 CDS PBPRA2420 NC_006370.1 2799162 2800799 D hypothetical protein 2799162..2800799 Photobacterium profundum SS9 3122360 YP_130607.1 CDS PBPRA2421 NC_006370.1 2801015 2801704 D transcriptional regulatory protein PhoP 2801015..2801704 Photobacterium profundum SS9 3122964 YP_130608.1 CDS PBPRA2422 NC_006370.1 2801701 2803047 D sensor protein PhoQ 2801701..2803047 Photobacterium profundum SS9 3123818 YP_130609.2 CDS PBPRA2423 NC_006370.1 2803121 2804323 R enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase complement(2803121..2804323) Photobacterium profundum SS9 3123974 YP_130610.1 CDS PBPRA2424 NC_006370.1 2804574 2806850 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(2804574..2806850) Photobacterium profundum SS9 3124706 YP_130611.1 CDS PBPRA2426 NC_006370.1 2808252 2809460 D transposase 2808252..2809460 Photobacterium profundum SS9 3124649 YP_130612.1 CDS PBPRA2427 NC_006370.1 2809564 2810688 R carboxypeptidase G2 complement(2809564..2810688) Photobacterium profundum SS9 3125372 YP_130613.1 CDS PBPRA2428 NC_006370.1 2811609 2812043 R transposase complement(2811609..2812043) Photobacterium profundum SS9 3125314 YP_130614.1 CDS PBPRA2429 NC_006370.1 2813129 2813962 R hypothetical protein complement(2813129..2813962) Photobacterium profundum SS9 3125531 YP_130615.1 CDS PBPRA2430 NC_006370.1 2814554 2815408 D Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 2814554..2815408 Photobacterium profundum SS9 3122439 YP_130616.1 CDS PBPRA2431 NC_006370.1 2815722 2817179 D pyruvate kinase II 2815722..2817179 Photobacterium profundum SS9 3125407 YP_130617.1 CDS PBPRA2432 NC_006370.1 2817312 2817893 R ribosomal-protein-alanine acetyltransferase complement(2817312..2817893) Photobacterium profundum SS9 3122570 YP_130618.1 CDS PBPRA2433 NC_006370.1 2817922 2818425 D 6-O-methylguanine-DNA methyltransferase 2817922..2818425 Photobacterium profundum SS9 3123407 YP_130619.1 CDS PBPRA2434 NC_006370.1 2818487 2820022 R transcriptional regulator TyrR complement(2818487..2820022) Photobacterium profundum SS9 3123945 YP_130620.1 CDS PBPRA2435 NC_006370.1 2820268 2821314 R hypothetical protein complement(2820268..2821314) Photobacterium profundum SS9 3122957 YP_130621.1 CDS PBPRA2436 NC_006370.1 2821311 2822747 R ATPase complement(2821311..2822747) Photobacterium profundum SS9 3123961 YP_130622.1 CDS PBPRA2437 NC_006370.1 2823157 2823543 R phage shock protein C complement(2823157..2823543) Photobacterium profundum SS9 3125187 YP_130623.1 CDS pspB NC_006370.1 2823543 2823770 R acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B complement(2823543..2823770) Photobacterium profundum SS9 3125351 YP_130624.1 CDS PBPRA2439 NC_006370.1 2823875 2824540 R phage shock protein A complement(2823875..2824540) Photobacterium profundum SS9 3123986 YP_130625.1 CDS PBPRA2440 NC_006370.1 2824728 2825741 D psp operon transcriptional activator 2824728..2825741 Photobacterium profundum SS9 3124558 YP_130626.1 CDS PBPRA2441 NC_006370.1 2825939 2827558 D peptide ABC transporter substrate-binding protein 2825939..2827558 Photobacterium profundum SS9 3125226 YP_130627.1 CDS PBPRA2442 NC_006370.1 2827562 2828524 D peptide ABC transporter, permease protein 2827562..2828524 Photobacterium profundum SS9 3123097 YP_130628.1 CDS PBPRA2443 NC_006370.1 2828511 2829398 D peptide ABC transporter, permease protein 2828511..2829398 Photobacterium profundum SS9 3125494 YP_130629.1 CDS PBPRA2444 NC_006370.1 2829399 2830397 D peptide ABC transporter, ATP-binding protein 2829399..2830397 Photobacterium profundum SS9 3125154 YP_130630.1 CDS PBPRA2445 NC_006370.1 2830394 2831218 D peptide ABC transporter ATPase 2830394..2831218 Photobacterium profundum SS9 3125527 YP_130631.1 CDS PBPRA2446 NC_006370.1 2831295 2831990 R OMP decarboxylase; OMPDCase; OMPdecase; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(2831295..2831990) Photobacterium profundum SS9 3124334 YP_130632.1 CDS PBPRA2447 NC_006370.1 2832108 2833277 R tetratricopeptide repeat protein complement(2832108..2833277) Photobacterium profundum SS9 3122140 YP_130633.1 CDS PBPRA2448 NC_006370.1 2833284 2833568 R hypothetical protein complement(2833284..2833568) Photobacterium profundum SS9 3124541 YP_130634.1 CDS PBPRA2449 NC_006370.1 2833699 2833989 R integration host factor, beta subunit complement(2833699..2833989) Photobacterium profundum SS9 3123786 YP_130635.1 CDS rpsA NC_006370.1 2834072 2835742 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(2834072..2835742) Photobacterium profundum SS9 3123852 YP_130636.1 CDS cmk NC_006370.1 2835855 2836586 R Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase complement(2835855..2836586) Photobacterium profundum SS9 3122550 YP_130637.1 CDS PBPRA2452 NC_006370.1 2836811 2838097 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(2836811..2838097) Photobacterium profundum SS9 3125473 YP_130638.1 CDS PBPRA2454 NC_006370.1 2838806 2840065 R lipoprotein complement(2838806..2840065) Photobacterium profundum SS9 3125467 YP_130639.1 CDS PBPRA2455 NC_006370.1 2840415 2841497 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase complement(2840415..2841497) Photobacterium profundum SS9 3124442 YP_130640.1 CDS PBPRA2456 NC_006370.1 2842025 2844709 R DNA topoisomerase (ATP-hydrolyzing) complement(2842025..2844709) Photobacterium profundum SS9 3122365 YP_130641.1 CDS PBPRA2457 NC_006370.1 2845490 2846197 D Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2845490..2846197 Photobacterium profundum SS9 3125435 YP_130642.1 CDS PBPRA2458 NC_006370.1 2846680 2847357 D phosphoglycolate phosphatase 2846680..2847357 Photobacterium profundum SS9 3125322 YP_130643.1 CDS PBPRA2459 NC_006370.1 2847734 2849995 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2847734..2849995 Photobacterium profundum SS9 3125355 YP_130644.1 CDS nrdB NC_006370.1 2850046 2851179 D B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 2850046..2851179 Photobacterium profundum SS9 3125350 YP_130645.1 CDS PBPRA2461 NC_006370.1 2851176 2851463 D (Fe-S)-binding protein 2851176..2851463 Photobacterium profundum SS9 3125374 YP_130646.1 CDS PBPRA2462 NC_006370.1 2851625 2852482 R hypothetical protein complement(2851625..2852482) Photobacterium profundum SS9 3124959 YP_130647.1 CDS PBPRA2463 NC_006370.1 2852781 2853053 D hypothetical protein 2852781..2853053 Photobacterium profundum SS9 3124942 YP_130648.1 CDS PBPRA2464 NC_006370.1 2853146 2854369 R competence damage protein CinA complement(2853146..2854369) Photobacterium profundum SS9 3125164 YP_130649.1 CDS PBPRA2465 NC_006370.1 2854754 2856019 D tyrosine-specific transport protein 2854754..2856019 Photobacterium profundum SS9 3125193 YP_130650.1 CDS PBPRA2466 NC_006370.1 2856333 2857262 D hypothetical protein 2856333..2857262 Photobacterium profundum SS9 3125192 YP_130651.1 CDS PBPRA2467 NC_006370.1 2857448 2859439 D hypothetical protein 2857448..2859439 Photobacterium profundum SS9 3125206 YP_130652.1 CDS PBPRA2468 NC_006370.1 2859521 2860249 R hypothetical protein complement(2859521..2860249) Photobacterium profundum SS9 3125022 YP_130653.1 CDS PBPRA2469 NC_006370.1 2860277 2861473 R hypothetical protein complement(2860277..2861473) Photobacterium profundum SS9 3125274 YP_130654.2 CDS cysB NC_006370.1 2861659 2862633 R LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB complement(2861659..2862633) Photobacterium profundum SS9 3124968 YP_130655.1 CDS PBPRA2471 NC_006370.1 2863017 2863745 D hypothetical protein 2863017..2863745 Photobacterium profundum SS9 3125088 YP_130656.1 CDS PBPRA2472 NC_006370.1 2863902 2864693 D tRNA-(MSIO[6]A)-hydroxylase 2863902..2864693 Photobacterium profundum SS9 3125436 YP_130657.1 CDS PBPRA2473 NC_006370.1 2865072 2866043 D transcriptional regulator CysB-like protein 2865072..2866043 Photobacterium profundum SS9 3124918 YP_130658.1 CDS PBPRA2474 NC_006370.1 2866144 2867325 R metal-dependent amidase/aminoacylase/carboxypeptidase complement(2866144..2867325) Photobacterium profundum SS9 3124898 YP_130659.1 CDS PBPRA2475 NC_006370.1 2867325 2867774 R hypothetical protein complement(2867325..2867774) Photobacterium profundum SS9 3125063 YP_130660.1 CDS PBPRA2476 NC_006370.1 2867767 2868594 R hypothetical protein complement(2867767..2868594) Photobacterium profundum SS9 3125538 YP_130661.1 CDS PBPRA2477 NC_006370.1 2868976 2871627 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(2868976..2871627) Photobacterium profundum SS9 3125461 YP_130662.1 CDS PBPRA2478 NC_006370.1 2872099 2872347 D hypothetical protein 2872099..2872347 Photobacterium profundum SS9 3124927 YP_130663.1 CDS PBPRA2479 NC_006370.1 2872502 2872903 R hypothetical protein complement(2872502..2872903) Photobacterium profundum SS9 3125153 YP_130664.1 CDS PBPRA2480 NC_006370.1 2873036 2874097 R SohB; periplasmic protein; member of the peptidase S49 family; periplasmic protease complement(2873036..2874097) Photobacterium profundum SS9 3125450 YP_130665.1 CDS PBPRA2481 NC_006370.1 2874413 2875156 D short chain dehydrogenase 2874413..2875156 Photobacterium profundum SS9 3125356 YP_130666.1 CDS PBPRA2482 NC_006370.1 2875243 2876376 R pseudouridine synthase complement(2875243..2876376) Photobacterium profundum SS9 3125417 YP_130667.1 CDS PBPRA2483 NC_006370.1 2876607 2877227 R translation factor complement(2876607..2877227) Photobacterium profundum SS9 3125422 YP_130668.1 CDS PBPRA2484 NC_006370.1 2877224 2878117 R metal-dependent phosphoesterase complement(2877224..2878117) Photobacterium profundum SS9 3125137 YP_130669.1 CDS PBPRA2485 NC_006370.1 2878429 2879442 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; 3-deoxy-7-phosphoheptulonate synthase 2878429..2879442 Photobacterium profundum SS9 3125289 YP_130670.1 CDS PBPRA2486 NC_006370.1 2879439 2881031 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 2879439..2881031 Photobacterium profundum SS9 3125472 YP_130671.1 CDS PBPRA2487 NC_006370.1 2881044 2881682 D TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 2881044..2881682 Photobacterium profundum SS9 3125271 YP_130672.2 CDS trpD NC_006370.1 2881694 2882704 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 2881694..2882704 Photobacterium profundum SS9 3125230 YP_130673.1 CDS PBPRA2489 NC_006370.1 2882707 2884077 D monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 2882707..2884077 Photobacterium profundum SS9 3124947 YP_130674.1 CDS PBPRA2490 NC_006370.1 2884093 2885283 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 2884093..2885283 Photobacterium profundum SS9 3125369 YP_130675.1 CDS trpA NC_006370.1 2885283 2886092 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 2885283..2886092 Photobacterium profundum SS9 3125234 YP_130676.1 CDS PBPRA2492 NC_006370.1 2886462 2887682 D proton/glutamate symporter 2886462..2887682 Photobacterium profundum SS9 3122595 YP_130677.1 CDS PBPRA2493 NC_006370.1 2888362 2889246 D hypothetical protein 2888362..2889246 Photobacterium profundum SS9 3125183 YP_130678.1 CDS PBPRA2494 NC_006370.1 2889826 2890263 D hypothetical protein 2889826..2890263 Photobacterium profundum SS9 3122103 YP_130679.1 CDS PBPRA2495 NC_006370.1 2890273 2891127 D hypothetical protein 2890273..2891127 Photobacterium profundum SS9 3122105 YP_130680.1 CDS PBPRA2496 NC_006370.1 2891127 2892512 D Flp pilus assembly protein 2891127..2892512 Photobacterium profundum SS9 3122280 YP_130681.1 CDS PBPRA2497 NC_006370.1 2892509 2893003 D hypothetical protein 2892509..2893003 Photobacterium profundum SS9 3122605 YP_130682.1 CDS PBPRA2498 NC_006370.1 2893017 2894282 D hypothetical protein 2893017..2894282 Photobacterium profundum SS9 3125403 YP_130683.1 CDS PBPRA2499 NC_006370.1 2894279 2895553 D Flp pilus assembly protein 2894279..2895553 Photobacterium profundum SS9 3122613 YP_130684.1 CDS PBPRA2500 NC_006370.1 2895550 2896458 D Flp pilus assembly protein TadB 2895550..2896458 Photobacterium profundum SS9 3122582 YP_130685.1 CDS PBPRA2501 NC_006370.1 2896458 2897309 D Flp pilus assembly protein TadC 2896458..2897309 Photobacterium profundum SS9 3122405 YP_130686.1 CDS PBPRA2502 NC_006370.1 2897306 2898067 D hypothetical protein 2897306..2898067 Photobacterium profundum SS9 3122577 YP_130687.1 CDS PBPRA2503 NC_006370.1 2898517 2899074 D hypothetical protein 2898517..2899074 Photobacterium profundum SS9 3122379 YP_130688.1 CDS PBPRA2504 NC_006370.1 2899121 2900605 D hypothetical protein 2899121..2900605 Photobacterium profundum SS9 3122418 YP_130689.1 CDS PBPRA2505 NC_006370.1 2900611 2901273 D hypothetical protein 2900611..2901273 Photobacterium profundum SS9 3122471 YP_130690.1 CDS PBPRA2506 NC_006370.1 2901467 2902006 D Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 2901467..2902006 Photobacterium profundum SS9 3122761 YP_130691.1 CDS PBPRA2507 NC_006370.1 2902029 2902427 D acyl-CoA hydrolase 2902029..2902427 Photobacterium profundum SS9 3122750 YP_130692.1 CDS PBPRA2508 NC_006370.1 2902588 2902887 D unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; hypothetical protein 2902588..2902887 Photobacterium profundum SS9 3122797 YP_130693.1 CDS PBPRA2509 NC_006370.1 2902887 2903273 D hypothetical protein 2902887..2903273 Photobacterium profundum SS9 3122491 YP_130694.1 CDS PBPRA2510 NC_006370.1 2903379 2904317 R hypothetical protein complement(2903379..2904317) Photobacterium profundum SS9 3122873 YP_130695.1 CDS PBPRA2511 NC_006370.1 2904623 2905363 R pseudouridine synthase Rlu family protein complement(2904623..2905363) Photobacterium profundum SS9 3122806 YP_130696.1 CDS PBPRA2512 NC_006370.1 2905462 2906796 R sodium-dependent transporter complement(2905462..2906796) Photobacterium profundum SS9 3122646 YP_130697.1 CDS cls NC_006370.1 2907239 2908696 D catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 2907239..2908696 Photobacterium profundum SS9 3122927 YP_130698.1 CDS PBPRA2514 NC_006370.1 2908893 2909384 D hypothetical protein 2908893..2909384 Photobacterium profundum SS9 3122476 YP_130699.1 CDS PBPRA2515 NC_006370.1 2909386 2910552 D GGDEF family protein 2909386..2910552 Photobacterium profundum SS9 3123077 YP_130700.1 CDS PBPRA2516 NC_006370.1 2910693 2912270 R BCCT family transporter complement(2910693..2912270) Photobacterium profundum SS9 3123166 YP_130701.1 CDS PBPRA2517 NC_006370.1 2912796 2913515 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(2912796..2913515) Photobacterium profundum SS9 3123356 YP_130702.1 CDS PBPRA2518 NC_006370.1 2913520 2915409 R hypothetical protein complement(2913520..2915409) Photobacterium profundum SS9 3122929 YP_130703.1 CDS PBPRA2519 NC_006370.1 2915665 2916813 R alcohol dehydrogenase complement(2915665..2916813) Photobacterium profundum SS9 3123370 YP_130704.1 CDS PBPRA2520 NC_006370.1 2917214 2919109 R hypothetical protein complement(2917214..2919109) Photobacterium profundum SS9 3123253 YP_130705.1 CDS PBPRA2521 NC_006370.1 2919233 2920708 R nitrate transporter complement(2919233..2920708) Photobacterium profundum SS9 3122922 YP_130706.1 CDS PBPRA2522 NC_006370.1 2920995 2921327 R nitrite reductase NADPH complement(2920995..2921327) Photobacterium profundum SS9 3123091 YP_130707.1 CDS PBPRA2523 NC_006370.1 2921405 2923939 R NAD(P)H-nitrite reductase, large subunit complement(2921405..2923939) Photobacterium profundum SS9 3123527 YP_130708.1 CDS PBPRA2524 NC_006370.1 2923988 2924824 R uroporphyrin-III C-methyltransferase complement(2923988..2924824) Photobacterium profundum SS9 3123907 YP_130709.1 CDS PBPRA2525 NC_006370.1 2925276 2927972 D nitrate reductase large subunit 2925276..2927972 Photobacterium profundum SS9 3123931 YP_130710.1 CDS PBPRA2526 NC_006370.1 2927950 2928885 R hypothetical protein complement(2927950..2928885) Photobacterium profundum SS9 3123827 YP_130711.1 CDS PBPRA2527 NC_006370.1 2928904 2930229 R enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase complement(2928904..2930229) Photobacterium profundum SS9 3123676 YP_130712.1 CDS PBPRA2528 NC_006370.1 2930721 2931191 R hypothetical protein complement(2930721..2931191) Photobacterium profundum SS9 3123699 YP_130713.1 CDS PBPRA2531 NC_006370.1 2932284 2935592 D hypothetical protein 2932284..2935592 Photobacterium profundum SS9 3124510 YP_130714.1 CDS tnaA NC_006370.1 2936464 2937930 D tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; tryptophanase 2936464..2937930 Photobacterium profundum SS9 3124359 YP_130715.1 CDS PBPRA2533 NC_006370.1 2938147 2939295 D tryptophan-specific transport protein 2938147..2939295 Photobacterium profundum SS9 3124347 YP_130716.1 CDS PBPRA2534 NC_006370.1 2939744 2940619 D pyridoxine kinase 2939744..2940619 Photobacterium profundum SS9 3123528 YP_130717.1 CDS PBPRA2535 NC_006370.1 2940719 2941198 R inner membrane protein complement(2940719..2941198) Photobacterium profundum SS9 3124326 YP_130718.1 CDS dgt NC_006370.1 2942079 2943611 D forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase 2942079..2943611 Photobacterium profundum SS9 3124255 YP_130719.1 CDS PBPRA2537 NC_006370.1 2943937 2944632 R hypothetical protein complement(2943937..2944632) Photobacterium profundum SS9 3124429 YP_130720.1 CDS PBPRA2538 NC_006370.1 2944647 2945846 R hypothetical protein complement(2944647..2945846) Photobacterium profundum SS9 3124265 YP_130721.1 CDS PBPRA2539 NC_006370.1 2946083 2946577 R hypothetical protein complement(2946083..2946577) Photobacterium profundum SS9 3124319 YP_130722.1 CDS PBPRA2540 NC_006370.1 2946646 2948055 R hypothetical protein complement(2946646..2948055) Photobacterium profundum SS9 3124569 YP_130723.1 CDS PBPRA2541 NC_006370.1 2948048 2950987 R hypothetical protein complement(2948048..2950987) Photobacterium profundum SS9 3124662 YP_130724.1 CDS PBPRA2542 NC_006370.1 2950991 2951770 R hypothetical protein complement(2950991..2951770) Photobacterium profundum SS9 3124452 YP_130725.1 CDS PBPRA2543 NC_006370.1 2951984 2952838 D hypothetical protein 2951984..2952838 Photobacterium profundum SS9 3124226 YP_130726.1 CDS PBPRA2545 NC_006370.1 2953470 2954051 D hypothetical protein 2953470..2954051 Photobacterium profundum SS9 3124724 YP_130727.1 CDS PBPRA2546 NC_006370.1 2954193 2955050 R Na(+)-dependent transporter complement(2954193..2955050) Photobacterium profundum SS9 3124694 YP_130728.1 CDS PBPRA2547 NC_006370.1 2955180 2956241 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(2955180..2956241) Photobacterium profundum SS9 3124568 YP_130729.1 CDS PBPRA2548 NC_006370.1 2956387 2957136 R hypothetical protein complement(2956387..2957136) Photobacterium profundum SS9 3124659 YP_130730.1 CDS PBPRA2549 NC_006370.1 2957155 2957679 R peptidoglycan-associated lipoprotein complement(2957155..2957679) Photobacterium profundum SS9 3124441 YP_130731.1 CDS tolB NC_006370.1 2957716 2959065 R forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB complement(2957716..2959065) Photobacterium profundum SS9 3124371 YP_130732.1 CDS PBPRA2551 NC_006370.1 2959077 2960120 R hypothetical protein complement(2959077..2960120) Photobacterium profundum SS9 3124375 YP_130733.1 CDS PBPRA2552 NC_006370.1 2960133 2960576 R tolR membrane protein complement(2960133..2960576) Photobacterium profundum SS9 3124428 YP_130734.1 CDS PBPRA2553 NC_006370.1 2960583 2961269 R TolQ protein complement(2960583..2961269) Photobacterium profundum SS9 3124426 YP_130735.1 CDS PBPRA2554 NC_006370.1 2961266 2961673 R hypothetical protein complement(2961266..2961673) Photobacterium profundum SS9 3124536 YP_130736.1 CDS PBPRA2555 NC_006370.1 2961923 2962228 R hypothetical protein complement(2961923..2962228) Photobacterium profundum SS9 3124542 YP_130737.1 CDS PBPRA2556 NC_006370.1 2962221 2962328 R hypothetical protein complement(2962221..2962328) Photobacterium profundum SS9 3124567 YP_130738.1 CDS PBPRA2557 NC_006370.1 2962340 2963476 R cytochrome d ubiquinol oxidase, subunit II complement(2962340..2963476) Photobacterium profundum SS9 3124572 YP_130739.1 CDS PBPRA2558 NC_006370.1 2963494 2965080 R cytochrome d ubiquinol oxidase, subunit I complement(2963494..2965080) Photobacterium profundum SS9 3124753 YP_130740.1 CDS PBPRA2559 NC_006370.1 2966245 2966982 R alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E complement(2966245..2966982) Photobacterium profundum SS9 3124014 YP_130741.1 CDS PBPRA2560 NC_006370.1 2967355 2967936 D Na(+)-translocating NADH-quinone reductase subunit E 2967355..2967936 Photobacterium profundum SS9 3124134 YP_130742.1 CDS PBPRA2561 NC_006370.1 2967937 2968515 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 2967937..2968515 Photobacterium profundum SS9 3124543 YP_130743.1 CDS PBPRA2562 NC_006370.1 2968518 2970803 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 2968518..2970803 Photobacterium profundum SS9 3124293 YP_130744.1 CDS PBPRA2563 NC_006370.1 2970807 2971856 D RnfD-related protein 2970807..2971856 Photobacterium profundum SS9 3124352 YP_130745.1 CDS PBPRA2564 NC_006370.1 2971869 2972504 D part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG 2971869..2972504 Photobacterium profundum SS9 3124353 YP_130746.1 CDS PBPRA2565 NC_006370.1 2972501 2973202 D in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex RsxE subunit 2972501..2973202 Photobacterium profundum SS9 3123619 YP_130747.1 CDS PBPRA2566 NC_006370.1 2973340 2973981 D endonuclease III 2973340..2973981 Photobacterium profundum SS9 3123899 YP_130748.1 CDS PBPRA2567 NC_006370.1 2974043 2974408 D lactoylglutathione lyase 2974043..2974408 Photobacterium profundum SS9 3123557 YP_130749.1 CDS PBPRA2568 NC_006370.1 2974458 2974796 R hypothetical protein complement(2974458..2974796) Photobacterium profundum SS9 3123943 YP_130750.1 CDS PBPRA2569 NC_006370.1 2974959 2975570 D manganese superoxide dismutase 2974959..2975570 Photobacterium profundum SS9 3123946 YP_130751.1 CDS PBPRA2570 NC_006370.1 2975697 2976140 D hypothetical protein 2975697..2976140 Photobacterium profundum SS9 3123965 YP_130752.1 CDS PBPRA2571 NC_006370.1 2976253 2977143 R sodium-type flagellar protein MotY complement(2976253..2977143) Photobacterium profundum SS9 3123551 YP_130753.1 CDS PBPRA2572 NC_006370.1 2977313 2977984 D Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 2977313..2977984 Photobacterium profundum SS9 3123930 YP_130754.1 CDS PBPRA2573 NC_006370.1 2978419 2979666 D long-chain fatty acid transport protein 2978419..2979666 Photobacterium profundum SS9 3123668 YP_130755.1 CDS PBPRA2574 NC_006370.1 2979720 2982104 D lipase 2979720..2982104 Photobacterium profundum SS9 3123663 YP_130756.1 CDS PBPRA2575 NC_006370.1 2982200 2982817 R Ahp/CTSA family anti-oxidant protein complement(2982200..2982817) Photobacterium profundum SS9 3123759 YP_130757.1 CDS PBPRA2576 NC_006370.1 2983111 2984433 D permease 2983111..2984433 Photobacterium profundum SS9 3123706 YP_130758.1 CDS PBPRA2577 NC_006370.1 2984729 2985070 R glutaredoxin-related protein complement(2984729..2985070) Photobacterium profundum SS9 3123658 YP_130759.1 CDS PBPRA2578 NC_006370.1 2985330 2985914 D superoxide dismutase 2985330..2985914 Photobacterium profundum SS9 3124276 YP_130760.1 CDS PBPRA2579 NC_006370.1 2986014 2987132 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(2986014..2987132) Photobacterium profundum SS9 3124879 YP_130761.1 CDS PBPRA2580 NC_006370.1 2987903 2989342 D Na+/H+ antiporter 2987903..2989342 Photobacterium profundum SS9 3122961 YP_130762.1 CDS PBPRA2581 NC_006370.1 2989763 2990494 D hypothetical protein 2989763..2990494 Photobacterium profundum SS9 3122982 YP_130763.1 CDS PBPRA2582 NC_006370.1 2990494 2990955 D hypothetical protein 2990494..2990955 Photobacterium profundum SS9 3123932 YP_130764.1 CDS PBPRA2583 NC_006370.1 2991049 2992185 D carboxypeptidase G2 2991049..2992185 Photobacterium profundum SS9 3123491 YP_130765.1 CDS PBPRA2584 NC_006370.1 2992340 2992651 R hypothetical protein complement(2992340..2992651) Photobacterium profundum SS9 3123396 YP_130766.1 CDS PBPRA2585 NC_006370.1 2993023 2994036 R nucleoid-associated protein NdpA complement(2993023..2994036) Photobacterium profundum SS9 3122466 YP_130767.1 CDS PBPRA2586 NC_006370.1 2994126 2994338 D hypothetical protein 2994126..2994338 Photobacterium profundum SS9 3123650 YP_130768.1 CDS PBPRA2587 NC_006370.1 2994392 2996251 D alkaline phosphatase 2994392..2996251 Photobacterium profundum SS9 3124124 YP_130769.1 CDS PBPRA2588 NC_006370.1 2996387 2996674 R hypothetical protein complement(2996387..2996674) Photobacterium profundum SS9 3124136 YP_130770.1 CDS PBPRA2589 NC_006370.1 2996929 2998551 D hypothetical protein 2996929..2998551 Photobacterium profundum SS9 3124029 YP_130771.1 CDS PBPRA2590 NC_006370.1 2998548 3000497 R decatenates replicating daughter chromosomes; DNA topoisomerase III complement(2998548..3000497) Photobacterium profundum SS9 3125200 YP_130772.1 CDS PBPRA2591 NC_006370.1 3000706 3001800 R catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase complement(3000706..3001800) Photobacterium profundum SS9 3124333 YP_130773.1 CDS PBPRA2592 NC_006370.1 3001794 3002834 R selenophosphate synthase complement(3001794..3002834) Photobacterium profundum SS9 3123856 YP_130774.1 CDS PBPRA2593 NC_006370.1 3003080 3003646 R nitroreductase complement(3003080..3003646) Photobacterium profundum SS9 3123143 YP_130775.1 CDS PBPRA2594 NC_006370.1 3003754 3005769 R 2,4-dienoyl-CoA reductase complement(3003754..3005769) Photobacterium profundum SS9 3123408 YP_130776.1 CDS PBPRA2595 NC_006370.1 3005930 3007783 D protease IV 3005930..3007783 Photobacterium profundum SS9 3124812 YP_130777.1 CDS ansA NC_006370.1 3007980 3008879 D converts asparagine to aspartate and ammonia; cytoplasmic asparaginase I 3007980..3008879 Photobacterium profundum SS9 3122805 YP_130778.1 CDS PBPRA2597 NC_006370.1 3008983 3009651 D glutathione S-transferase 3008983..3009651 Photobacterium profundum SS9 3124656 YP_130779.1 CDS PBPRA2598 NC_006370.1 3009661 3009966 R hypothetical protein complement(3009661..3009966) Photobacterium profundum SS9 3122162 YP_130780.1 CDS PBPRA2599 NC_006370.1 3010224 3011036 D hypothetical protein 3010224..3011036 Photobacterium profundum SS9 3125508 YP_130781.1 CDS PBPRA2600 NC_006370.1 3011120 3012328 R ISSod3 transposase complement(3011120..3012328) Photobacterium profundum SS9 3124237 YP_130782.1 CDS PBPRA2601 NC_006370.1 3012933 3013361 R this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B complement(3012933..3013361) Photobacterium profundum SS9 3123483 YP_130783.2 CDS PBPRA2602 NC_006370.1 3013657 3014649 D catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 3013657..3014649 Photobacterium profundum SS9 3124118 YP_130784.1 CDS PBPRA2603 NC_006370.1 3014991 3015866 D hypothetical protein 3014991..3015866 Photobacterium profundum SS9 3123217 YP_130785.1 CDS PBPRA2604 NC_006370.1 3015960 3016340 R hypothetical protein complement(3015960..3016340) Photobacterium profundum SS9 3123758 YP_130786.1 CDS PBPRA2605 NC_006370.1 3017003 3018877 D Ser protein kinase 3017003..3018877 Photobacterium profundum SS9 3125475 YP_130787.1 CDS PBPRA2606 NC_006370.1 3018927 3020198 D hypothetical protein 3018927..3020198 Photobacterium profundum SS9 3124357 YP_130788.1 CDS PBPRA2607 NC_006370.1 3020261 3021799 D SpoVR family protein 3020261..3021799 Photobacterium profundum SS9 3122347 YP_130789.1 CDS PBPRA2608 NC_006370.1 3021908 3022759 R Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator complement(3021908..3022759) Photobacterium profundum SS9 3125535 YP_130790.1 CDS nhaB NC_006370.1 3023200 3024792 D involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 3023200..3024792 Photobacterium profundum SS9 3124681 YP_130791.1 CDS PBPRA2610 NC_006370.1 3024895 3025425 D disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 3024895..3025425 Photobacterium profundum SS9 3125021 YP_130792.1 CDS PBPRA2611 NC_006370.1 3025565 3026200 R preprotein translocase SecA complement(3025565..3026200) Photobacterium profundum SS9 3122928 YP_130793.1 CDS PBPRA2612 NC_006370.1 3026505 3027218 D hypothetical protein 3026505..3027218 Photobacterium profundum SS9 3125399 YP_130794.1 CDS PBPRA2613 NC_006370.1 3027354 3028259 D regulator protein 3027354..3028259 Photobacterium profundum SS9 3125418 YP_130795.1 CDS PBPRA2614 NC_006370.1 3028385 3028828 R hypothetical protein complement(3028385..3028828) Photobacterium profundum SS9 3125232 YP_130796.1 CDS PBPRA2615 NC_006370.1 3029087 3029329 D proteinase inhibitor 3029087..3029329 Photobacterium profundum SS9 3125221 YP_130797.1 CDS PBPRA2616 NC_006370.1 3029361 3029606 R transcriptional regulator complement(3029361..3029606) Photobacterium profundum SS9 3125309 YP_130798.1 CDS PBPRA2617 NC_006370.1 3030252 3031121 R hypothetical protein complement(3030252..3031121) Photobacterium profundum SS9 3125347 YP_130799.1 CDS PBPRA2618 NC_006370.1 3031527 3031922 D hypothetical protein 3031527..3031922 Photobacterium profundum SS9 3125373 YP_130800.1 CDS PBPRA2619 NC_006370.1 3032199 3032762 D transcriptional regulator 3032199..3032762 Photobacterium profundum SS9 3125165 YP_130801.1 CDS PBPRA2620 NC_006370.1 3032775 3034652 D acyltransferase 3032775..3034652 Photobacterium profundum SS9 3124961 YP_130802.1 CDS PBPRA2621 NC_006370.1 3034720 3036156 R O-succinylbenzoic acid--CoA ligase complement(3034720..3036156) Photobacterium profundum SS9 3124206 YP_130803.1 CDS PBPRA2622 NC_006370.1 3036144 3037163 R catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase complement(3036144..3037163) Photobacterium profundum SS9 3125209 YP_130804.1 CDS PBPRA2623 NC_006370.1 3037144 3037989 R catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; acyl-CoA thioester hydrolase complement(3037144..3037989) Photobacterium profundum SS9 3125208 YP_130805.1 CDS PBPRA2624 NC_006370.1 3037958 3039688 R SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase complement(3037958..3039688) Photobacterium profundum SS9 3124990 YP_130806.1 CDS PBPRA2625 NC_006370.1 3039685 3041085 R synthesizes isochorismate acid from chorismate; menaquinone-specific isochorismate synthase complement(3039685..3041085) Photobacterium profundum SS9 3125026 YP_130807.1 CDS PBPRA2626 NC_006370.1 3041896 3043110 D broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase 3041896..3043110 Photobacterium profundum SS9 3125061 YP_130808.1 CDS PBPRA2627 NC_006370.1 3043368 3043952 D hypothetical protein 3043368..3043952 Photobacterium profundum SS9 3125103 YP_130809.1 CDS PBPRA2628 NC_006370.1 3044009 3045319 D dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 3044009..3045319 Photobacterium profundum SS9 3125085 YP_130810.1 CDS PBPRA2629 NC_006370.1 3045409 3046062 R hypothetical protein complement(3045409..3046062) Photobacterium profundum SS9 3124925 YP_130811.1 CDS PBPRA2630 NC_006370.1 3046072 3046635 D hypothetical protein 3046072..3046635 Photobacterium profundum SS9 3124963 YP_130812.1 CDS PBPRA2631 NC_006370.1 3046781 3047119 D hypothetical protein 3046781..3047119 Photobacterium profundum SS9 3125260 YP_130813.1 CDS PBPRA2632 NC_006370.1 3047769 3048053 R DNA uptake protein complement(3047769..3048053) Photobacterium profundum SS9 3124933 YP_130814.1 CDS PBPRA2633 NC_006370.1 3048244 3050115 R peptidyl-prolyl cis-trans isomerase D complement(3048244..3050115) Photobacterium profundum SS9 3125462 YP_130815.1 CDS PBPRA2634 NC_006370.1 3050386 3050697 R nucleoid DNA-binding protein complement(3050386..3050697) Photobacterium profundum SS9 3125176 YP_130816.1 CDS PBPRA2635 NC_006370.1 3050899 3053271 R ATP-dependent protease LA complement(3050899..3053271) Photobacterium profundum SS9 3124931 YP_130817.1 CDS clpX NC_006370.1 3053409 3054689 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(3053409..3054689) Photobacterium profundum SS9 3125353 YP_130818.1 CDS clpP NC_006370.1 3054805 3055428 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(3054805..3055428) Photobacterium profundum SS9 3125366 YP_130819.1 CDS tig NC_006370.1 3055534 3056850 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(3055534..3056850) Photobacterium profundum SS9 3122473 YP_130820.1 CDS PBPRA2639 NC_006370.1 3057057 3057323 D hypothetical protein 3057057..3057323 Photobacterium profundum SS9 3122487 YP_130821.1 CDS PBPRA2641 NC_006370.1 3058130 3058987 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 3058130..3058987 Photobacterium profundum SS9 3122764 YP_130822.1 CDS PBPRA2642 NC_006370.1 3059169 3060089 R glucose-1-phosphate uridylyltransferase complement(3059169..3060089) Photobacterium profundum SS9 3122676 YP_130823.1 CDS rfaH NC_006370.1 3060369 3060866 R transcriptional activator RfaH complement(3060369..3060866) Photobacterium profundum SS9 3122610 YP_130824.1 CDS PBPRA2644 NC_006370.1 3061273 3062658 D dipeptide/tripeptide permease 3061273..3062658 Photobacterium profundum SS9 3122549 YP_130825.1 CDS PBPRA2645 NC_006370.1 3063042 3064091 R response regulator complement(3063042..3064091) Photobacterium profundum SS9 3123151 YP_130826.1 CDS PBPRA2646 NC_006370.1 3064465 3065343 D transcriptional regulator 3064465..3065343 Photobacterium profundum SS9 3123538 YP_130827.1 CDS PBPRA2647 NC_006370.1 3065552 3066151 D hypothetical protein 3065552..3066151 Photobacterium profundum SS9 3123073 YP_130828.1 CDS PBPRA2648 NC_006370.1 3066259 3067776 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(3066259..3067776) Photobacterium profundum SS9 3122691 YP_130829.1 CDS PBPRA2649 NC_006370.1 3067870 3068364 R bacteriocin production protein complement(3067870..3068364) Photobacterium profundum SS9 3122553 YP_130830.1 CDS PBPRA2650 NC_006370.1 3068426 3069013 R DedD protein complement(3068426..3069013) Photobacterium profundum SS9 3123269 YP_130831.1 CDS PBPRA2651 NC_006370.1 3069091 3070371 R folylpolyglutamate synthase/dihydrofolate synthase complement(3069091..3070371) Photobacterium profundum SS9 3123282 YP_130832.1 CDS PBPRA2652 NC_006370.1 3070593 3071516 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(3070593..3071516) Photobacterium profundum SS9 3123691 YP_130833.1 CDS truA NC_006370.1 3071659 3072444 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(3071659..3072444) Photobacterium profundum SS9 3123187 YP_130834.1 CDS PBPRA2654 NC_006370.1 3072634 3076860 R hypothetical protein complement(3072634..3076860) Photobacterium profundum SS9 3123388 YP_130835.1 CDS PBPRA2655 NC_006370.1 3077357 3078370 R aspartate-semialdehyde dehydrogenase complement(3077357..3078370) Photobacterium profundum SS9 3123415 YP_130836.1 CDS PBPRA2656 NC_006370.1 3078367 3079542 R catalyzes the formation of 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate from erythronate-4-phosphate; erythronate-4-phosphate dehydrogenase complement(3078367..3079542) Photobacterium profundum SS9 3123480 YP_130837.1 CDS PBPRA2657 NC_006370.1 3079590 3080756 R UDP-glucose dehydrogenase complement(3079590..3080756) Photobacterium profundum SS9 3123416 YP_130838.1 CDS PBPRA2658 NC_006370.1 3081183 3082397 R 3-oxoacyl- synthase I complement(3081183..3082397) Photobacterium profundum SS9 3123560 YP_130839.1 CDS mnmC NC_006370.1 3082671 3084764 D catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 3082671..3084764 Photobacterium profundum SS9 3123497 YP_130840.1 CDS PBPRA2660 NC_006370.1 3084883 3085266 R hypothetical protein complement(3084883..3085266) Photobacterium profundum SS9 3123671 YP_130841.1 CDS PBPRA2661 NC_006370.1 3085280 3086641 R hypothetical protein complement(3085280..3086641) Photobacterium profundum SS9 3123651 YP_130842.1 CDS PBPRA2662 NC_006370.1 3086958 3088523 D hypothetical protein 3086958..3088523 Photobacterium profundum SS9 3123596 YP_130843.1 CDS PBPRA2663 NC_006370.1 3088767 3089834 D hypothetical protein 3088767..3089834 Photobacterium profundum SS9 3123595 YP_130844.1 CDS PBPRA2664 NC_006370.1 3089950 3090291 R undecaprenylphosphate N-acetylglucosamine 1-phosphate transferase complement(3089950..3090291) Photobacterium profundum SS9 3122061 YP_130845.1 CDS PBPRA2665 NC_006370.1 3090350 3091060 R undecaprenylphosphate N-acetylglucosamine 1-phosphate transferase complement(3090350..3091060) Photobacterium profundum SS9 3123574 YP_130846.1 CDS PBPRA2666 NC_006370.1 3091473 3091742 R hypothetical protein complement(3091473..3091742) Photobacterium profundum SS9 3123533 YP_130847.1 CDS PBPRA2667 NC_006370.1 3091884 3095780 R hypothetical protein complement(3091884..3095780) Photobacterium profundum SS9 3123794 YP_130848.1 CDS PBPRA2668 NC_006370.1 3095871 3097541 R hypothetical protein complement(3095871..3097541) Photobacterium profundum SS9 3123788 YP_130849.1 CDS PBPRA2669 NC_006370.1 3098002 3099237 D hypothetical protein 3098002..3099237 Photobacterium profundum SS9 3123660 YP_130850.1 CDS PBPRA2670 NC_006370.1 3099191 3099664 D hypothetical protein 3099191..3099664 Photobacterium profundum SS9 3123979 YP_130851.1 CDS PBPRA2671 NC_006370.1 3100310 3100564 D cell growth regulatory protein mazE 3100310..3100564 Photobacterium profundum SS9 3123860 YP_130852.1 CDS PBPRA2672 NC_006370.1 3100564 3100917 D MazF protein 3100564..3100917 Photobacterium profundum SS9 3122049 YP_130853.1 CDS PBPRA2673 NC_006370.1 3101075 3102175 R hypothetical protein complement(3101075..3102175) Photobacterium profundum SS9 3123895 YP_130854.1 CDS PBPRA2674 NC_006370.1 3102475 3103425 R UTP-glucose-1-phosphateuridylyltransferase, galU complement(3102475..3103425) Photobacterium profundum SS9 3124104 YP_130855.1 CDS PBPRA2675 NC_006370.1 3103582 3104748 R nucleotide sugar dehydrogenase complement(3103582..3104748) Photobacterium profundum SS9 3124055 YP_130856.1 CDS PBPRA2676 NC_006370.1 3104767 3105774 R nucleotide sugar epimerase complement(3104767..3105774) Photobacterium profundum SS9 3124010 YP_130857.1 CDS PBPRA2677 NC_006370.1 3105776 3106504 R hypotetical teichoic acid biosynthesis protein A complement(3105776..3106504) Photobacterium profundum SS9 3124150 YP_130858.1 CDS PBPRA2678 NC_006370.1 3106474 3107652 R hypothetical protein complement(3106474..3107652) Photobacterium profundum SS9 3124101 YP_130859.1 CDS PBPRA2679 NC_006370.1 3107645 3108880 R hypothetical protein complement(3107645..3108880) Photobacterium profundum SS9 3124128 YP_130860.1 CDS PBPRA2680 NC_006370.1 3108864 3110021 R glycosyltransferase complement(3108864..3110021) Photobacterium profundum SS9 3124229 YP_130861.1 CDS PBPRA2681 NC_006370.1 3110474 3111385 R glycosyl transferase complement(3110474..3111385) Photobacterium profundum SS9 3124209 YP_130862.1 CDS PBPRA2682 NC_006370.1 3111417 3112556 R hypothetical protein complement(3111417..3112556) Photobacterium profundum SS9 3122800 YP_130863.1 CDS PBPRA2683 NC_006370.1 3112613 3113749 R hypothetical protein complement(3112613..3113749) Photobacterium profundum SS9 3124184 YP_130864.1 CDS PBPRA2684 NC_006370.1 3113782 3115113 R hypothetical protein complement(3113782..3115113) Photobacterium profundum SS9 3124308 YP_130865.1 CDS PBPRA2685 NC_006370.1 3115342 3115761 R glycerol-3-phosphatecytidyltransferase complement(3115342..3115761) Photobacterium profundum SS9 3124286 YP_130866.1 CDS PBPRA2686 NC_006370.1 3115805 3117946 R tyrosine-protein kinase Wzc complement(3115805..3117946) Photobacterium profundum SS9 3124531 YP_130867.1 CDS PBPRA2687 NC_006370.1 3118064 3118495 R protein-tyrosine-phosphatase complement(3118064..3118495) Photobacterium profundum SS9 3124513 YP_130868.1 CDS PBPRA2688 NC_006370.1 3118638 3119774 R capsular polysaccharide transport protein complement(3118638..3119774) Photobacterium profundum SS9 3124450 YP_130869.1 CDS PBPRA2689 NC_006370.1 3120435 3120722 R hypothetical protein complement(3120435..3120722) Photobacterium profundum SS9 3124424 YP_130870.1 CDS PBPRA2690 NC_006370.1 3120884 3121579 D lipoprotein 3120884..3121579 Photobacterium profundum SS9 3124400 YP_130871.1 CDS PBPRA2691 NC_006370.1 3121592 3122473 D polysaccharide synthesis-like protein 3121592..3122473 Photobacterium profundum SS9 3124260 YP_130872.1 CDS PBPRA2692 NC_006370.1 3122473 3124671 D hypothetical protein 3122473..3124671 Photobacterium profundum SS9 3124099 YP_130873.1 CDS PBPRA2693 NC_006370.1 3124965 3125261 D hypothetical protein 3124965..3125261 Photobacterium profundum SS9 3124468 YP_130874.1 CDS PBPRA2694 NC_006370.1 3125355 3125630 R hypothetical protein complement(3125355..3125630) Photobacterium profundum SS9 3124815 YP_130875.1 CDS PBPRA2695 NC_006370.1 3125699 3125998 R transporting ATPase complement(3125699..3125998) Photobacterium profundum SS9 3124695 YP_130876.1 CDS PBPRA2696 NC_006370.1 3125961 3126233 R transporting ATPase complement(3125961..3126233) Photobacterium profundum SS9 3124676 YP_130877.1 CDS PBPRA2697 NC_006370.1 3126387 3126950 R galactosyl-transferase complement(3126387..3126950) Photobacterium profundum SS9 3124495 YP_130878.1 CDS PBPRA2698 NC_006370.1 3127191 3129095 D mannosyl-transferase 3127191..3129095 Photobacterium profundum SS9 3124712 YP_130879.1 CDS PBPRA2699 NC_006370.1 3129127 3130071 R nucleoside-diphosphate-sugar epimerase complement(3129127..3130071) Photobacterium profundum SS9 3124716 YP_130880.1 CDS PBPRA2700 NC_006370.1 3130127 3131026 D hypothetical protein 3130127..3131026 Photobacterium profundum SS9 3124484 YP_130881.1 CDS PBPRA2701 NC_006370.1 3132038 3133933 R hypothetical protein complement(3132038..3133933) Photobacterium profundum SS9 3124506 YP_130882.1 CDS PBPRA2702 NC_006370.1 3133926 3134948 R hypothetical protein complement(3133926..3134948) Photobacterium profundum SS9 3124644 YP_130883.1 CDS PBPRA2703 NC_006370.1 3135035 3135430 R glycerol-3-phosphate cytidyltransferase complement(3135035..3135430) Photobacterium profundum SS9 3124594 YP_130884.1 CDS PBPRA2704 NC_006370.1 3135532 3135966 R transposase complement(3135532..3135966) Photobacterium profundum SS9 3124390 YP_130885.1 CDS PBPRA2705 NC_006370.1 3136120 3138216 R hypothetical protein complement(3136120..3138216) Photobacterium profundum SS9 3124472 YP_130886.1 CDS PBPRA2706 NC_006370.1 3138213 3139547 R hypothetical protein complement(3138213..3139547) Photobacterium profundum SS9 3124306 YP_130887.1 CDS PBPRA2707 NC_006370.1 3139602 3140648 R polysaccharide biosynthesis protein, NeuB complement(3139602..3140648) Photobacterium profundum SS9 3124378 YP_130888.1 CDS PBPRA2708 NC_006370.1 3140651 3142213 R hypothetical protein complement(3140651..3142213) Photobacterium profundum SS9 3123375 YP_130889.1 CDS PBPRA2709 NC_006370.1 3142210 3142908 R NeuA complement(3142210..3142908) Photobacterium profundum SS9 3124182 YP_130890.1 CDS PBPRA2710 NC_006370.1 3142908 3144086 R FlmB complement(3142908..3144086) Photobacterium profundum SS9 3124198 YP_130891.1 CDS PBPRA2711 NC_006370.1 3144083 3145096 R polysaccharide biosynthesis protein complement(3144083..3145096) Photobacterium profundum SS9 3124253 YP_130892.1 CDS PBPRA2712 NC_006370.1 3145373 3146521 R teichoic acid biosynthesis protein F complement(3145373..3146521) Photobacterium profundum SS9 3124087 YP_130893.1 CDS PBPRA2713 NC_006370.1 3147232 3147822 D hypothetical protein 3147232..3147822 Photobacterium profundum SS9 3124112 YP_130894.1 CDS PBPRA2714 NC_006370.1 3147901 3148986 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(3147901..3148986) Photobacterium profundum SS9 3124131 YP_130895.1 CDS PBPRA2715 NC_006370.1 3149134 3151029 R PTS system, fructose-specific IIABC component complement(3149134..3151029) Photobacterium profundum SS9 3124023 YP_130896.1 CDS PBPRA2716 NC_006370.1 3151643 3152848 R mannose-6-phosphate isomer complement(3151643..3152848) Photobacterium profundum SS9 3124053 YP_130897.1 CDS PBPRA2717 NC_006370.1 3153254 3154099 D transcriptional regulator 3153254..3154099 Photobacterium profundum SS9 3124042 YP_130898.1 CDS PBPRA2718 NC_006370.1 3154152 3154958 R hypothetical protein complement(3154152..3154958) Photobacterium profundum SS9 3123883 YP_130899.1 CDS PBPRA2719 NC_006370.1 3154960 3155262 R phosphotransferase system fructose-specific component IIB complement(3154960..3155262) Photobacterium profundum SS9 3123873 YP_130900.1 CDS PBPRA2720 NC_006370.1 3155387 3156505 R 16S rRNA uridine-516 pseudouridylate synthase complement(3155387..3156505) Photobacterium profundum SS9 3123981 YP_130901.1 CDS PBPRA2721 NC_006370.1 3156748 3159879 R multidrug resistance protein complement(3156748..3159879) Photobacterium profundum SS9 3123985 YP_130902.1 CDS PBPRA2722 NC_006370.1 3159879 3161081 R HlyD family secretion protein complement(3159879..3161081) Photobacterium profundum SS9 3123956 YP_130903.1 CDS PBPRA2729 NC_006370.1 3162340 3164088 D hypothetical protein 3162340..3164088 Photobacterium profundum SS9 3123115 YP_130904.1 CDS PBPRA2730 NC_006370.1 3164136 3165098 R glutathione S-transferase complement(3164136..3165098) Photobacterium profundum SS9 3123267 YP_130905.1 CDS PBPRA2731 NC_006370.1 3165265 3166332 R hypothetical protein complement(3165265..3166332) Photobacterium profundum SS9 3122842 YP_130906.1 CDS PBPRA2732 NC_006370.1 3166625 3167542 R transcriptional regulator complement(3166625..3167542) Photobacterium profundum SS9 3122989 YP_130907.1 CDS PBPRA2733 NC_006370.1 3167918 3168877 D hypothetical protein 3167918..3168877 Photobacterium profundum SS9 3122988 YP_130908.1 CDS PBPRA2734 NC_006370.1 3169249 3170457 R ISSod3 transposase complement(3169249..3170457) Photobacterium profundum SS9 3123004 YP_130909.2 CDS PBPRA2735 NC_006370.1 3170633 3172546 R choline-glycine betaine transporter complement(3170633..3172546) Photobacterium profundum SS9 3122756 YP_130910.1 CDS PBPRA2736 NC_006370.1 3172990 3174573 D Na+/H+ antiporter 3172990..3174573 Photobacterium profundum SS9 3122502 YP_130911.1 CDS PBPRA2737 NC_006370.1 3174764 3175570 D removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 3174764..3175570 Photobacterium profundum SS9 3122557 YP_130912.1 CDS PBPRA2738 NC_006370.1 3175645 3176295 D cofactor involved in the reduction of disulfides; glutaredoxin 2 3175645..3176295 Photobacterium profundum SS9 3122774 YP_130913.1 CDS PBPRA2739 NC_006370.1 3176399 3177076 R ABC-type arginine/histidine transport system, permease component complement(3176399..3177076) Photobacterium profundum SS9 3122315 YP_130914.1 CDS PBPRA2740 NC_006370.1 3177080 3177820 R ABC-type arginine transport system, permease component complement(3177080..3177820) Photobacterium profundum SS9 3122368 YP_130915.1 CDS PBPRA2741 NC_006370.1 3177904 3178722 R amino acid ABC transporter, periplasmic amino acid-binding protein complement(3177904..3178722) Photobacterium profundum SS9 3122382 YP_130916.1 CDS PBPRA2742 NC_006370.1 3178809 3179603 R ABC-type histidine transport system, ATPase component complement(3178809..3179603) Photobacterium profundum SS9 3122261 YP_130917.1 CDS PBPRA2743 NC_006370.1 3180478 3182205 D peptide ABC transporter substrate-binding protein 3180478..3182205 Photobacterium profundum SS9 3122211 YP_130918.1 CDS PBPRA2744 NC_006370.1 3182237 3182530 R ArsR family transcriptional regulator complement(3182237..3182530) Photobacterium profundum SS9 3122189 YP_130919.1 CDS PBPRA2745 NC_006370.1 3182698 3184179 R hypothetical protein complement(3182698..3184179) Photobacterium profundum SS9 3122109 YP_130920.1 CDS PBPRA2746 NC_006370.1 3184176 3185543 R hypothetical protein complement(3184176..3185543) Photobacterium profundum SS9 3122163 YP_130921.1 CDS PBPRA2747 NC_006370.1 3185716 3186015 R hypothetical protein complement(3185716..3186015) Photobacterium profundum SS9 3122148 YP_130922.1 CDS PBPRA2748 NC_006370.1 3186014 3187750 D hypothetical protein 3186014..3187750 Photobacterium profundum SS9 3121957 YP_130923.1 CDS PBPRA2749 NC_006370.1 3188218 3189732 D hypothetical protein 3188218..3189732 Photobacterium profundum SS9 3121981 YP_130924.1 CDS PBPRA2750 NC_006370.1 3189946 3192222 D formate acetyltransferase 3189946..3192222 Photobacterium profundum SS9 3122029 YP_130925.1 CDS PBPRA2751 NC_006370.1 3192467 3193120 D hypothetical protein 3192467..3193120 Photobacterium profundum SS9 3122291 YP_130926.1 CDS pflA NC_006370.1 3193370 3194110 D activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 3193370..3194110 Photobacterium profundum SS9 3124763 YP_130927.1 CDS PBPRA2753 NC_006370.1 3194260 3195198 R hypothetical protein complement(3194260..3195198) Photobacterium profundum SS9 3122485 YP_130928.1 CDS PBPRA2754 NC_006370.1 3195570 3196562 D tricarboxylic transport TctC 3195570..3196562 Photobacterium profundum SS9 3124820 YP_130929.1 CDS PBPRA2755 NC_006370.1 3196675 3197184 D tricarboxylic transport TctB 3196675..3197184 Photobacterium profundum SS9 3124831 YP_130930.1 CDS PBPRA2756 NC_006370.1 3197195 3198127 D tricarboxylic transport TctA 3197195..3198127 Photobacterium profundum SS9 3124769 YP_130931.1 CDS PBPRA2757 NC_006370.1 3198174 3199454 D hypothetical protein 3198174..3199454 Photobacterium profundum SS9 3124787 YP_130932.1 CDS PBPRA2758 NC_006370.1 3199438 3200136 D hypothetical protein 3199438..3200136 Photobacterium profundum SS9 3121953 YP_130933.1 CDS PBPRA2759 NC_006370.1 3200337 3201488 R iron-containing alcohol dehydrogenase complement(3200337..3201488) Photobacterium profundum SS9 3124762 YP_130934.1 CDS PBPRA2760 NC_006370.1 3201626 3202312 R ThiJ/PfpI family protein complement(3201626..3202312) Photobacterium profundum SS9 3122011 YP_130935.1 CDS PBPRA2761 NC_006370.1 3202497 3203396 D transcriptional regulator 3202497..3203396 Photobacterium profundum SS9 3122697 YP_130936.1 CDS PBPRA2762 NC_006370.1 3203451 3204128 R response regulator ofcitrate/malate metabolism complement(3203451..3204128) Photobacterium profundum SS9 3122085 YP_130937.1 CDS PBPRA2763 NC_006370.1 3204168 3205772 R citrate/malate metabolism signal transduction histidine kinase complement(3204168..3205772) Photobacterium profundum SS9 3122071 YP_130938.1 CDS PBPRA2764 NC_006370.1 3206048 3207802 D catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 3206048..3207802 Photobacterium profundum SS9 3122167 YP_130939.1 CDS PBPRA2765 NC_006370.1 3208120 3209025 R LysR family transcriptional regulator complement(3208120..3209025) Photobacterium profundum SS9 3122164 YP_130940.1 CDS PBPRA2766 NC_006370.1 3209246 3210724 D formate transporter 1 3209246..3210724 Photobacterium profundum SS9 3122281 YP_130941.1 CDS PBPRA2767 NC_006370.1 3210859 3211512 R hypothetical protein complement(3210859..3211512) Photobacterium profundum SS9 3122256 YP_130942.1 CDS PBPRA2768 NC_006370.1 3211749 3212249 D hypothetical protein 3211749..3212249 Photobacterium profundum SS9 3122340 YP_130943.1 CDS PBPRA2769 NC_006370.1 3212510 3213769 D phosphoglycerate transport regulatory protein PgtC 3212510..3213769 Photobacterium profundum SS9 3122318 YP_130944.1 CDS PBPRA2770 NC_006370.1 3213772 3216132 D phosphoglycerate transport regulatory protein PgtB 3213772..3216132 Photobacterium profundum SS9 3122292 YP_130945.1 CDS PBPRA2771 NC_006370.1 3216119 3217402 D phosphoglycerate transport system transcription regulator 3216119..3217402 Photobacterium profundum SS9 3122395 YP_130946.1 CDS PBPRA2772 NC_006370.1 3217704 3219005 R transporter permease complement(3217704..3219005) Photobacterium profundum SS9 3122373 YP_130947.1 CDS PBPRA2773 NC_006370.1 3219015 3219374 R hypothetical protein complement(3219015..3219374) Photobacterium profundum SS9 3122792 YP_130948.1 CDS PBPRA2774 NC_006370.1 3219391 3220266 R hydrolase complement(3219391..3220266) Photobacterium profundum SS9 3122420 YP_130949.1 CDS PBPRA2775 NC_006370.1 3220531 3221427 R hypothetical protein complement(3220531..3221427) Photobacterium profundum SS9 3122409 YP_130950.1 CDS PBPRA2776 NC_006370.1 3221897 3222214 D PTS system, cellobiose-specific iibcomponent 3221897..3222214 Photobacterium profundum SS9 3122648 YP_130951.1 CDS PBPRA2777 NC_006370.1 3222232 3223557 D phosphotransferase systemcellobiose-specific component IIC 3222232..3223557 Photobacterium profundum SS9 3122948 YP_130952.1 CDS PBPRA2778 NC_006370.1 3223560 3223898 D PTS system, cellobiose-specific iiacomponent 3223560..3223898 Photobacterium profundum SS9 3122864 YP_130953.1 CDS PBPRA2779 NC_006370.1 3223909 3224799 D hypothetical protein 3223909..3224799 Photobacterium profundum SS9 3122852 YP_130954.1 CDS PBPRA2780 NC_006370.1 3225000 3225560 D hypothetical protein 3225000..3225560 Photobacterium profundum SS9 3123011 YP_130955.1 CDS PBPRA2781 NC_006370.1 3225858 3228044 R hypothetical protein complement(3225858..3228044) Photobacterium profundum SS9 3122944 YP_130956.1 CDS PBPRA2782 NC_006370.1 3228209 3229435 R catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; mutase complement(3228209..3229435) Photobacterium profundum SS9 3123200 YP_130957.1 CDS PBPRA2783 NC_006370.1 3229428 3230609 R hypothetical protein complement(3229428..3230609) Photobacterium profundum SS9 3123163 YP_130958.1 CDS PBPRA2784 NC_006370.1 3230684 3231985 R transport system permease protein complement(3230684..3231985) Photobacterium profundum SS9 3123340 YP_130959.1 CDS PBPRA2785 NC_006370.1 3231995 3232354 R protein yhfU complement(3231995..3232354) Photobacterium profundum SS9 3123323 YP_130960.1 CDS PBPRA2786 NC_006370.1 3232371 3233246 R hydrolase complement(3232371..3233246) Photobacterium profundum SS9 3123226 YP_130961.1 CDS PBPRA2787 NC_006370.1 3233271 3233591 R hypothetical protein complement(3233271..3233591) Photobacterium profundum SS9 3123542 YP_130962.1 CDS PBPRA2788 NC_006370.1 3233647 3234543 R hypothetical protein complement(3233647..3234543) Photobacterium profundum SS9 3123489 YP_130963.1 CDS PBPRA2789 NC_006370.1 3234838 3235476 R hypothetical protein complement(3234838..3235476) Photobacterium profundum SS9 3123493 YP_130964.1 CDS PBPRA2790 NC_006370.1 3235563 3236591 R outer membrane protein complement(3235563..3236591) Photobacterium profundum SS9 3123592 YP_130965.2 CDS rrmA NC_006370.1 3237057 3237872 D methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase 3237057..3237872 Photobacterium profundum SS9 3123608 YP_130966.1 CDS PBPRA2792 NC_006370.1 3238087 3239052 D hypothetical protein 3238087..3239052 Photobacterium profundum SS9 3123553 YP_130967.1 CDS PBPRA2793 NC_006370.1 3239486 3240454 D ABC transporter substrate-binding protein 3239486..3240454 Photobacterium profundum SS9 3123689 YP_130968.1 CDS PBPRA2794 NC_006370.1 3240554 3241480 D ABC transporter, permease protein 3240554..3241480 Photobacterium profundum SS9 3123640 YP_130969.1 CDS PBPRA2795 NC_006370.1 3241490 3242284 D ABC transporter, ATP-binding protein 3241490..3242284 Photobacterium profundum SS9 3123766 YP_130970.1 CDS PBPRA2796 NC_006370.1 3242606 3242917 D hypothetical protein 3242606..3242917 Photobacterium profundum SS9 3123748 YP_130971.1 CDS PBPRA2797 NC_006370.1 3243116 3243628 R hypothetical protein complement(3243116..3243628) Photobacterium profundum SS9 3123952 YP_130972.1 CDS PBPRA2798 NC_006370.1 3243901 3245097 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 3243901..3245097 Photobacterium profundum SS9 3123821 YP_130973.1 CDS PBPRA2799 NC_006370.1 3245262 3247418 D catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 3245262..3247418 Photobacterium profundum SS9 3123839 YP_130974.1 CDS PBPRA2800 NC_006370.1 3247730 3248707 D hypothetical protein 3247730..3248707 Photobacterium profundum SS9 3124026 YP_130975.1 CDS PBPRA2801 NC_006370.1 3248704 3249081 D hypothetical protein 3248704..3249081 Photobacterium profundum SS9 3123987 YP_130976.1 CDS PBPRA2802 NC_006370.1 3249147 3249416 D hypothetical protein 3249147..3249416 Photobacterium profundum SS9 3124094 YP_130977.1 CDS PBPRA2803 NC_006370.1 3249648 3249914 D hypothetical protein 3249648..3249914 Photobacterium profundum SS9 3124060 YP_130978.1 CDS PBPRA2804 NC_006370.1 3249959 3250216 R hypothetical protein complement(3249959..3250216) Photobacterium profundum SS9 3124111 YP_130979.1 CDS PBPRA2805 NC_006370.1 3250344 3251096 D transposase 3250344..3251096 Photobacterium profundum SS9 3124218 YP_130980.1 CDS PBPRA2806 NC_006370.1 3251181 3252746 D hypothetical protein 3251181..3252746 Photobacterium profundum SS9 3124210 YP_130981.1 CDS PBPRA2807 NC_006370.1 3253096 3253941 R formate transporter 1 complement(3253096..3253941) Photobacterium profundum SS9 3124177 YP_130982.1 CDS PBPRA2808 NC_006370.1 3254489 3255037 R phosphodiesterase complement(3254489..3255037) Photobacterium profundum SS9 3124380 YP_130983.1 CDS PBPRA2809 NC_006370.1 3255156 3255572 R hypothetical protein complement(3255156..3255572) Photobacterium profundum SS9 3124284 YP_130984.1 CDS PBPRA2810 NC_006370.1 3255584 3255934 R nitrogen regulatory protein P-II family protein complement(3255584..3255934) Photobacterium profundum SS9 3124463 YP_130985.1 CDS PBPRA2811 NC_006370.1 3255934 3256716 R PTS system mannose-specific, factor IIC complement(3255934..3256716) Photobacterium profundum SS9 3124682 YP_130986.1 CDS PBPRA2812 NC_006370.1 3256735 3257469 R PTS system mannose-specific, factor IIC complement(3256735..3257469) Photobacterium profundum SS9 3124658 YP_130987.1 CDS PBPRA2813 NC_006370.1 3257836 3258753 D sugar nucleotide epimerase 3257836..3258753 Photobacterium profundum SS9 3124611 YP_130988.1 CDS PBPRA2814 NC_006370.1 3258820 3261285 R permease complement(3258820..3261285) Photobacterium profundum SS9 3124604 YP_130989.1 CDS PBPRA2815 NC_006370.1 3261282 3261944 R ABC transporter ATP-binding protein complement(3261282..3261944) Photobacterium profundum SS9 3124688 YP_130990.1 CDS PBPRA2816 NC_006370.1 3261814 3262554 D arylesterase 3261814..3262554 Photobacterium profundum SS9 3124749 YP_130991.1 CDS PBPRA2817 NC_006370.1 3262759 3264846 R hypothetical protein complement(3262759..3264846) Photobacterium profundum SS9 3124730 YP_130992.1 CDS PBPRA2818 NC_006370.1 3265857 3266684 R short chain dehydrogenase/reductase family oxidoreductase complement(3265857..3266684) Photobacterium profundum SS9 3124629 YP_130993.1 CDS PBPRA2819 NC_006370.1 3267398 3268252 D thioredoxin-like protein 3267398..3268252 Photobacterium profundum SS9 3124486 YP_130994.1 CDS PBPRA2820 NC_006370.1 3268333 3268893 R heat shock protein complement(3268333..3268893) Photobacterium profundum SS9 3124425 YP_130995.1 CDS PBPRA2821 NC_006370.1 3268934 3269893 R hypothetical protein complement(3268934..3269893) Photobacterium profundum SS9 3124250 YP_130996.1 CDS PBPRA2822 NC_006370.1 3270578 3271213 D hypothetical protein 3270578..3271213 Photobacterium profundum SS9 3124350 YP_130997.1 CDS PBPRA2823 NC_006370.1 3271637 3272101 R SoxR family transcriptional regulator complement(3271637..3272101) Photobacterium profundum SS9 3124349 YP_130998.1 CDS PBPRA2824 NC_006370.1 3272255 3275152 D cation-transporting ATPase 3272255..3275152 Photobacterium profundum SS9 3122156 YP_130999.1 CDS PBPRA2825 NC_006370.1 3275393 3276253 D hypothetical protein 3275393..3276253 Photobacterium profundum SS9 3124846 YP_131000.1 CDS PBPRA2831 NC_006370.1 3278714 3278854 D hypothetical protein 3278714..3278854 Photobacterium profundum SS9 3123284 YP_131001.1 CDS PBPRA2832 NC_006370.1 3279248 3279829 D hypothetical protein 3279248..3279829 Photobacterium profundum SS9 3123385 YP_131002.1 CDS PBPRA2833 NC_006370.1 3279933 3280586 R threonine efflux protein complement(3279933..3280586) Photobacterium profundum SS9 3123254 YP_131003.1 CDS PBPRA2834 NC_006370.1 3280603 3281547 R LysR family transcriptional regulator complement(3280603..3281547) Photobacterium profundum SS9 3122445 YP_131004.1 CDS PBPRA2835 NC_006370.1 3281558 3282064 R hypothetical protein complement(3281558..3282064) Photobacterium profundum SS9 3122760 YP_131005.1 CDS ushA NC_006370.1 3282244 3283926 R catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor complement(3282244..3283926) Photobacterium profundum SS9 3122748 YP_131006.1 CDS PBPRA2837 NC_006370.1 3284196 3285551 R Na+/H+ antiporter complement(3284196..3285551) Photobacterium profundum SS9 3122436 YP_131007.1 CDS PBPRA2838 NC_006370.1 3285790 3287670 D methyl-accepting chemotaxis protein 3285790..3287670 Photobacterium profundum SS9 3122545 YP_131008.1 CDS PBPRA2839 NC_006370.1 3287913 3289796 D methyl-accepting chemotaxis protein 3287913..3289796 Photobacterium profundum SS9 3122592 YP_131009.1 CDS PBPRA2840 NC_006370.1 3289883 3291139 R serine transporter complement(3289883..3291139) Photobacterium profundum SS9 3122609 YP_131010.1 CDS PBPRA2841 NC_006370.1 3291450 3292304 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(3291450..3292304) Photobacterium profundum SS9 3122591 YP_131011.1 CDS PBPRA2842 NC_006370.1 3292324 3293133 R hypothetical protein complement(3292324..3293133) Photobacterium profundum SS9 3122778 YP_131012.1 CDS PBPRA2843 NC_006370.1 3293136 3293516 R hypothetical protein complement(3293136..3293516) Photobacterium profundum SS9 3123757 YP_131013.1 CDS PBPRA2844 NC_006370.1 3293529 3294377 R HemK protein, methylase of polypeptide chain release factors complement(3293529..3294377) Photobacterium profundum SS9 3122461 YP_131014.1 CDS prfA NC_006370.1 3294377 3295465 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(3294377..3295465) Photobacterium profundum SS9 3122519 YP_131015.1 CDS hemA NC_006370.1 3295478 3296740 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(3295478..3296740) Photobacterium profundum SS9 3122003 YP_131016.1 CDS PBPRA2847 NC_006370.1 3297089 3297760 D molecular chaperone LolB 3297089..3297760 Photobacterium profundum SS9 3122002 YP_131017.1 CDS ipk NC_006370.1 3297769 3298659 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 3297769..3298659 Photobacterium profundum SS9 3125430 YP_131018.1 CDS PBPRA2849 NC_006370.1 3298692 3299639 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 3298692..3299639 Photobacterium profundum SS9 3124832 YP_131019.1 CDS PBPRA2850 NC_006370.1 3299955 3300545 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 3299955..3300545 Photobacterium profundum SS9 3122170 YP_131020.1 CDS PBPRA2851 NC_006370.1 3300649 3301740 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 3300649..3301740 Photobacterium profundum SS9 3125501 YP_131021.1 CDS PBPRA2876 NC_006370.1 3305760 3307019 R catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase complement(3305760..3307019) Photobacterium profundum SS9 3124167 YP_131022.1 CDS mtgA NC_006370.1 3307153 3307791 D glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 3307153..3307791 Photobacterium profundum SS9 3123437 YP_131023.1 CDS PBPRA2878 NC_006370.1 3308002 3309426 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 3308002..3309426 Photobacterium profundum SS9 3123535 YP_131024.1 CDS PBPRA2879 NC_006370.1 3309541 3310602 D phoH family protein 3309541..3310602 Photobacterium profundum SS9 3124383 YP_131025.1 CDS PBPRA2880 NC_006370.1 3310609 3311073 D metalloprotease 3310609..3311073 Photobacterium profundum SS9 3124379 YP_131026.1 CDS PBPRA2881 NC_006370.1 3311175 3312047 D hemolysin 3311175..3312047 Photobacterium profundum SS9 3124274 YP_131027.1 CDS lnt NC_006370.1 3312050 3313603 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 3312050..3313603 Photobacterium profundum SS9 3123024 YP_131028.1 CDS PBPRA2883 NC_006370.1 3313699 3314376 D hypothetical protein 3313699..3314376 Photobacterium profundum SS9 3123386 YP_131029.1 CDS PBPRA2884 NC_006370.1 3314480 3314962 R hypothetical protein complement(3314480..3314962) Photobacterium profundum SS9 3122950 YP_131030.1 CDS leuS NC_006370.1 3315411 3317987 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 3315411..3317987 Photobacterium profundum SS9 3122219 YP_131031.1 CDS PBPRA2886 NC_006370.1 3318171 3318884 D rare lipoprotein B 3318171..3318884 Photobacterium profundum SS9 3122137 YP_131032.1 CDS holA NC_006370.1 3318881 3319912 D required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 3318881..3319912 Photobacterium profundum SS9 3122793 YP_131033.1 CDS PBPRA2888 NC_006370.1 3320134 3320451 D hypothetical protein 3320134..3320451 Photobacterium profundum SS9 3124423 YP_131034.2 CDS PBPRA2889 NC_006370.1 3320458 3320928 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 3320458..3320928 Photobacterium profundum SS9 3122527 YP_131035.1 CDS PBPRA2890 NC_006370.1 3320935 3322878 D penicillin-binding protein 2 3320935..3322878 Photobacterium profundum SS9 3122521 YP_131036.1 CDS PBPRA2891 NC_006370.1 3322884 3323996 D rod shape-determining protein RodA 3322884..3323996 Photobacterium profundum SS9 3122343 YP_131037.1 CDS PBPRA2892 NC_006370.1 3323997 3324902 D rare lipoprotein A 3323997..3324902 Photobacterium profundum SS9 3122146 YP_131038.1 CDS PBPRA2893 NC_006370.1 3325054 3326229 D D-alanyl-D-alanine carboxypeptidase 3325054..3326229 Photobacterium profundum SS9 3125482 YP_131039.1 CDS PBPRA2894 NC_006370.1 3326367 3326693 D hypothetical protein 3326367..3326693 Photobacterium profundum SS9 3122767 YP_131040.1 CDS lipB NC_006370.1 3326848 3327492 D lipoyl-[acyl-carrier protein]-protein-N-lipoyltransferse; lipoate-protein ligase B; transfers lipoate to apolipoproteins; involved in lipoate metabolism; lipoyltransferase 3326848..3327492 Photobacterium profundum SS9 3121974 YP_131041.1 CDS PBPRA2896 NC_006370.1 3327495 3328463 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 3327495..3328463 Photobacterium profundum SS9 3124044 YP_131042.1 CDS PBPRA2897 NC_006370.1 3328549 3329577 R lipoprotein complement(3328549..3329577) Photobacterium profundum SS9 3124033 YP_131043.1 CDS dapA NC_006370.1 3329609 3330496 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(3329609..3330496) Photobacterium profundum SS9 3125077 YP_131044.1 CDS PBPRA2899 NC_006370.1 3330741 3331292 D glycine cleavage system transcriptional repressor 3330741..3331292 Photobacterium profundum SS9 3123544 YP_131045.1 CDS bcp NC_006370.1 3331358 3331828 D bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 3331358..3331828 Photobacterium profundum SS9 3125090 YP_131046.1 CDS PBPRA2901 NC_006370.1 3331919 3332989 R permease PerM complement(3331919..3332989) Photobacterium profundum SS9 3122619 YP_131047.1 CDS PBPRA2902 NC_006370.1 3333409 3334866 D Zn-dependent protease 3333409..3334866 Photobacterium profundum SS9 3122599 YP_131048.1 CDS PBPRA2903 NC_006370.1 3335018 3335368 D arsenate reductase ArsC 3335018..3335368 Photobacterium profundum SS9 3123009 YP_131049.1 CDS PBPRA2904 NC_006370.1 3335368 3335952 D Trp repressor-binding protein 3335368..3335952 Photobacterium profundum SS9 3123681 YP_131050.1 CDS PBPRA2905 NC_006370.1 3335996 3336430 D hypothetical protein 3335996..3336430 Photobacterium profundum SS9 3123659 YP_131051.1 CDS PBPRA2906 NC_006370.1 3336492 3337721 R hypothetical protein complement(3336492..3337721) Photobacterium profundum SS9 3122328 YP_131052.1 CDS PBPRA2907 NC_006370.1 3338125 3339378 D uracil permease 3338125..3339378 Photobacterium profundum SS9 3122349 YP_131053.1 CDS PBPRA2908 NC_006370.1 3339453 3339887 R transposase complement(3339453..3339887) Photobacterium profundum SS9 3123558 YP_131054.1 CDS upp NC_006370.1 3340070 3340696 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(3340070..3340696) Photobacterium profundum SS9 3125381 YP_131055.1 CDS PBPRA2910 NC_006370.1 3340886 3341926 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 3340886..3341926 Photobacterium profundum SS9 3124086 YP_131056.1 CDS PBPRA2911 NC_006370.1 3341931 3342575 D phosphoribosylglycinamide formyltransferase 2 3341931..3342575 Photobacterium profundum SS9 3123875 YP_131057.1 CDS PBPRA2912 NC_006370.1 3342637 3343500 R amidotransferase complement(3342637..3343500) Photobacterium profundum SS9 3122404 YP_131058.1 CDS gmhA NC_006370.1 3343478 3344056 R catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase complement(3343478..3344056) Photobacterium profundum SS9 3122357 YP_131059.1 CDS PBPRA2914 NC_006370.1 3344121 3345863 R role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; sulfate transporter YchM complement(3344121..3345863) Photobacterium profundum SS9 3124376 YP_131060.1 CDS fadE NC_006370.1 3346324 3348792 D functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 3346324..3348792 Photobacterium profundum SS9 3123398 YP_131061.1 CDS PBPRA2916 NC_006370.1 3348900 3350141 R hypothetical protein complement(3348900..3350141) Photobacterium profundum SS9 3122263 YP_131062.1 CDS PBPRA2917 NC_006370.1 3350149 3350889 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(3350149..3350889) Photobacterium profundum SS9 3124322 YP_131063.1 CDS PBPRA2918 NC_006370.1 3350860 3351399 D ribonuclease HI 3350860..3351399 Photobacterium profundum SS9 3124147 YP_131064.1 CDS PBPRA2919 NC_006370.1 3351457 3352200 R SAM-dependent methyltransferase complement(3351457..3352200) Photobacterium profundum SS9 3124868 YP_131065.1 CDS PBPRA2920 NC_006370.1 3352206 3353000 D hydroxyacylglutathione hydrolase GloB 3352206..3353000 Photobacterium profundum SS9 3122245 YP_131066.1 CDS PBPRA2921 NC_006370.1 3353071 3354642 D membrane-bound lytic murein transglycosylase D 3353071..3354642 Photobacterium profundum SS9 3124795 YP_131067.1 CDS PBPRA2922 NC_006370.1 3354639 3355328 D hypothetical protein 3354639..3355328 Photobacterium profundum SS9 3122346 YP_131068.1 CDS PBPRA2923 NC_006370.1 3355309 3356160 R hypothetical protein complement(3355309..3356160) Photobacterium profundum SS9 3125362 YP_131069.1 CDS PBPRA2924 NC_006370.1 3356240 3356632 R hypothetical protein complement(3356240..3356632) Photobacterium profundum SS9 3125092 YP_131070.1 CDS PBPRA2934 NC_006370.1 3363212 3364234 R ABC-type oligopeptide transportsystem, ATPase component complement(3363212..3364234) Photobacterium profundum SS9 3123243 YP_131071.1 CDS PBPRA2935 NC_006370.1 3364207 3365193 R ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component complement(3364207..3365193) Photobacterium profundum SS9 3125526 YP_131072.1 CDS PBPRA2936 NC_006370.1 3365211 3367037 R binding protein component ofABC transporter complement(3365211..3367037) Photobacterium profundum SS9 3125273 YP_131073.1 CDS PBPRA2937 NC_006370.1 3367066 3368109 R peptide ABC transporter,permease protein complement(3367066..3368109) Photobacterium profundum SS9 3123258 YP_131074.1 CDS PBPRA2938 NC_006370.1 3368110 3369135 R transmembrane ABC transporterprotein complement(3368110..3369135) Photobacterium profundum SS9 3123159 YP_131075.1 CDS PBPRA2939 NC_006370.1 3369712 3370266 R Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase complement(3369712..3370266) Photobacterium profundum SS9 3123498 YP_131076.2 CDS metN NC_006370.1 3370566 3371600 D part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 3370566..3371600 Photobacterium profundum SS9 3122911 YP_131077.1 CDS PBPRA2941 NC_006370.1 3371590 3372276 D ABC-type metal ion transport system,permease component 3371590..3372276 Photobacterium profundum SS9 3124619 YP_131078.1 CDS metQ NC_006370.1 3372379 3373194 D DL-methionine transporter substrate-binding subunit 3372379..3373194 Photobacterium profundum SS9 3123702 YP_131079.1 CDS PBPRA2943 NC_006370.1 3373572 3374273 D hypothetical protein 3373572..3374273 Photobacterium profundum SS9 3125437 YP_131080.1 CDS PBPRA2944 NC_006370.1 3374365 3376080 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 3374365..3376080 Photobacterium profundum SS9 3125474 YP_131081.1 CDS PBPRA2945 NC_006370.1 3376621 3377745 D hypothetical protein 3376621..3377745 Photobacterium profundum SS9 3124537 YP_131082.1 CDS PBPRA2946 NC_006370.1 3377838 3378692 D hypothetical protein 3377838..3378692 Photobacterium profundum SS9 3122644 YP_131083.1 CDS PBPRA2947 NC_006370.1 3378824 3379027 D hypothetical protein 3378824..3379027 Photobacterium profundum SS9 3125311 YP_131084.1 CDS PBPRA2948 NC_006370.1 3379030 3379218 D hypothetical protein 3379030..3379218 Photobacterium profundum SS9 3124978 YP_131085.1 CDS PBPRA2949 NC_006370.1 3379302 3380663 R sodium-dependent transporter complement(3379302..3380663) Photobacterium profundum SS9 3125081 YP_131086.1 CDS PBPRA2950 NC_006370.1 3380877 3381188 R cytochrome complement(3380877..3381188) Photobacterium profundum SS9 3122804 YP_131087.1 CDS PBPRA2951 NC_006370.1 3381257 3382564 R cell cycle protein MesJ complement(3381257..3382564) Photobacterium profundum SS9 3125259 YP_131088.1 CDS PBPRA2952 NC_006370.1 3382697 3383656 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(3382697..3383656) Photobacterium profundum SS9 3125481 YP_131089.1 CDS dnaE NC_006370.1 3383753 3387229 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(3383753..3387229) Photobacterium profundum SS9 3122432 YP_131090.1 CDS rnhB NC_006370.1 3387343 3387948 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(3387343..3387948) Photobacterium profundum SS9 3125015 YP_131091.1 CDS lpxB NC_006370.1 3387958 3389100 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase complement(3387958..3389100) Photobacterium profundum SS9 3125363 YP_131092.1 CDS PBPRA2956 NC_006370.1 3389100 3389909 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(3389100..3389909) Photobacterium profundum SS9 3122483 YP_131093.1 CDS fabZ NC_006370.1 3389888 3390340 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(3389888..3390340) Photobacterium profundum SS9 3122129 YP_131094.1 CDS PBPRA2958 NC_006370.1 3390465 3391490 R UDP-3-O- glucosamine N-acyltransferase complement(3390465..3391490) Photobacterium profundum SS9 3122623 YP_131095.1 CDS PBPRA2959 NC_006370.1 3391571 3392146 R outer membrane protein OmpH complement(3391571..3392146) Photobacterium profundum SS9 3122496 YP_131096.1 CDS PBPRA2960 NC_006370.1 3392100 3394517 R part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins; outer membrane protein assembly factor YaeT complement(3392100..3394517) Photobacterium profundum SS9 3122714 YP_131097.1 CDS PBPRA2961 NC_006370.1 3394555 3395916 R membrane-associated Zn-dependent protease complement(3394555..3395916) Photobacterium profundum SS9 3122465 YP_131098.1 CDS PBPRA2962 NC_006370.1 3395913 3397106 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(3395913..3397106) Photobacterium profundum SS9 3122712 YP_131099.1 CDS PBPRA2963 NC_006370.1 3397169 3398017 R phosphatidate cytidylyltransferase complement(3397169..3398017) Photobacterium profundum SS9 3122699 YP_131100.1 CDS PBPRA2964 NC_006370.1 3398130 3398894 R undecaprenyl diphosphate synthase complement(3398130..3398894) Photobacterium profundum SS9 3122652 YP_131101.1 CDS frr NC_006370.1 3398981 3399538 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(3398981..3399538) Photobacterium profundum SS9 3122437 YP_131102.1 CDS pyrH NC_006370.1 3399682 3400404 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(3399682..3400404) Photobacterium profundum SS9 3122770 YP_131103.2 CDS tsf NC_006370.1 3400503 3401357 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(3400503..3401357) Photobacterium profundum SS9 3123149 YP_131104.1 CDS rpsB NC_006370.1 3401469 3402197 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(3401469..3402197) Photobacterium profundum SS9 3122421 YP_131105.1 CDS PBPRA2969 NC_006370.1 3402524 3403351 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 3402524..3403351 Photobacterium profundum SS9 3123743 YP_131106.1 CDS PBPRA2970 NC_006370.1 3403493 3406117 D catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 3403493..3406117 Photobacterium profundum SS9 3123062 YP_131107.1 CDS PBPRA2971 NC_006370.1 3406306 3406686 D hypothetical protein 3406306..3406686 Photobacterium profundum SS9 3123309 YP_131108.1 CDS PBPRA2972 NC_006370.1 3406732 3407187 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(3406732..3407187) Photobacterium profundum SS9 3123098 YP_131109.1 CDS PBPRA2973 NC_006370.1 3407314 3408051 R catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; tRNA pseudouridine synthase C complement(3407314..3408051) Photobacterium profundum SS9 3123056 YP_131110.1 CDS PBPRA2974 NC_006370.1 3408054 3408374 R hypothetical protein complement(3408054..3408374) Photobacterium profundum SS9 3123228 YP_131111.1 CDS PBPRA2975 NC_006370.1 3408549 3409595 D hypothetical protein 3408549..3409595 Photobacterium profundum SS9 3123950 YP_131112.1 CDS PBPRA2976 NC_006370.1 3409656 3409970 D hypothetical protein 3409656..3409970 Photobacterium profundum SS9 3123776 YP_131113.1 CDS PBPRA2977 NC_006370.1 3412543 3412773 D hypothetical protein 3412543..3412773 Photobacterium profundum SS9 3123618 YP_131114.1 CDS PBPRA2978 NC_006370.1 3412812 3413087 D hypothetical protein 3412812..3413087 Photobacterium profundum SS9 3123514 YP_131115.1 CDS PBPRA2979 NC_006370.1 3413273 3414658 D Tn5 transposase 3413273..3414658 Photobacterium profundum SS9 3124030 YP_131116.1 CDS PBPRA2980 NC_006370.1 3414715 3415488 R Zn-ribbon-containing protein complement(3414715..3415488) Photobacterium profundum SS9 3125168 YP_131117.1 CDS PBPRA2981 NC_006370.1 3415491 3416057 R SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd complement(3415491..3416057) Photobacterium profundum SS9 3123817 YP_131118.1 CDS queF NC_006370.1 3416201 3417046 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3416201..3417046 Photobacterium profundum SS9 3124050 YP_131119.1 CDS PBPRA2983 NC_006370.1 3417164 3419443 D hypothetical protein 3417164..3419443 Photobacterium profundum SS9 3124563 YP_131120.1 CDS PBPRA2984 NC_006370.1 3419581 3421140 D hypothetical protein 3419581..3421140 Photobacterium profundum SS9 3124415 YP_131121.1 CDS PBPRA2985 NC_006370.1 3421435 3422808 D hypothetical protein 3421435..3422808 Photobacterium profundum SS9 3124416 YP_131122.1 CDS xni NC_006370.1 3422834 3423670 D has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 3422834..3423670 Photobacterium profundum SS9 3124700 YP_131123.1 CDS PBPRA2987 NC_006370.1 3423796 3424878 R RNA 2'-O-ribose methyltransferase complement(3423796..3424878) Photobacterium profundum SS9 3124633 YP_131124.1 CDS PBPRA2988 NC_006370.1 3424888 3425262 R hypothetical protein complement(3424888..3425262) Photobacterium profundum SS9 3124195 YP_131125.1 CDS PBPRA2989 NC_006370.1 3425252 3425962 R hypothetical protein complement(3425252..3425962) Photobacterium profundum SS9 3124643 YP_131126.1 CDS PBPRA2990 NC_006370.1 3425955 3426863 R Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA complement(3425955..3426863) Photobacterium profundum SS9 3124726 YP_131127.1 CDS PBPRA2991 NC_006370.1 3427302 3428522 D aminotransferase, class V 3427302..3428522 Photobacterium profundum SS9 3124292 YP_131128.1 CDS PBPRA2992 NC_006370.1 3428537 3428971 D hypothetical protein 3428537..3428971 Photobacterium profundum SS9 3124363 YP_131129.1 CDS PBPRA2993 NC_006370.1 3429091 3429903 R HesA/MoeB/ThiF family protein complement(3429091..3429903) Photobacterium profundum SS9 3123995 YP_131130.1 CDS mltA NC_006370.1 3430036 3431139 R membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase A complement(3430036..3431139) Photobacterium profundum SS9 3124283 YP_131131.1 CDS PBPRA2995 NC_006370.1 3431395 3431769 R hypothetical protein complement(3431395..3431769) Photobacterium profundum SS9 3123846 YP_131132.1 CDS PBPRA2996 NC_006370.1 3431957 3433282 D catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 3431957..3433282 Photobacterium profundum SS9 3123697 YP_131133.1 CDS PBPRA2997 NC_006370.1 3433343 3435466 R exodeoxyribonuclease V, 67 kDa subunit complement(3433343..3435466) Photobacterium profundum SS9 3123951 YP_131134.1 CDS PBPRA2998 NC_006370.1 3435441 3439124 R exodeoxyribonuclease V complement(3435441..3439124) Photobacterium profundum SS9 3123902 YP_131135.1 CDS recC NC_006370.1 3439531 3443010 R catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination; exonuclease V subunit gamma complement(3439531..3443010) Photobacterium profundum SS9 3123612 YP_131136.1 CDS PBPRA3000 NC_006370.1 3443207 3444184 R hypothetical protein complement(3443207..3444184) Photobacterium profundum SS9 3123647 YP_131137.1 CDS PBPRA3001 NC_006370.1 3444368 3445258 D transcriptional regulator 3444368..3445258 Photobacterium profundum SS9 3123764 YP_131138.1 CDS PBPRA3002 NC_006370.1 3445276 3445965 R hypothetical protein complement(3445276..3445965) Photobacterium profundum SS9 3123941 YP_131139.1 CDS PBPRA3003 NC_006370.1 3446040 3446348 D DNA damage-inducible gene in sosregulon, dependent on cyclic AMP and H-NS 3446040..3446348 Photobacterium profundum SS9 3123150 YP_131140.1 CDS PBPRA3004 NC_006370.1 3446651 3447682 D 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 3446651..3447682 Photobacterium profundum SS9 3123351 YP_131141.1 CDS PBPRA3005 NC_006370.1 3447775 3448110 R hypothetical protein complement(3447775..3448110) Photobacterium profundum SS9 3123913 YP_131142.1 CDS PBPRA3006 NC_006370.1 3448198 3449394 R multidrug resistance protein complement(3448198..3449394) Photobacterium profundum SS9 3123525 YP_131143.1 CDS PBPRA3007 NC_006370.1 3449508 3449810 R hypothetical protein complement(3449508..3449810) Photobacterium profundum SS9 3123266 YP_131144.1 CDS PBPRA3008 NC_006370.1 3450153 3450674 D hypothetical protein 3450153..3450674 Photobacterium profundum SS9 3123071 YP_131145.1 CDS PBPRA3009 NC_006370.1 3450863 3451726 D transposase 3450863..3451726 Photobacterium profundum SS9 3123114 YP_131146.1 CDS PBPRA3010 NC_006370.1 3451877 3452347 D transposase and inactivated derivative 3451877..3452347 Photobacterium profundum SS9 3123455 YP_131147.1 CDS PBPRA3011 NC_006370.1 3452349 3452912 D transposase and inactivated derivative 3452349..3452912 Photobacterium profundum SS9 3122717 YP_131148.1 CDS PBPRA3018 NC_006370.1 3459381 3461966 R clpB, ATPase with chaperone activity complement(3459381..3461966) Photobacterium profundum SS9 3124854 YP_131149.1 CDS PBPRA3019 NC_006370.1 3462242 3462619 D hypothetical protein 3462242..3462619 Photobacterium profundum SS9 3124838 YP_131150.1 CDS PBPRA3020 NC_006370.1 3462738 3463490 R hypothetical protein complement(3462738..3463490) Photobacterium profundum SS9 3124783 YP_131151.1 CDS rluD NC_006370.1 3463492 3464466 R responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA; 23S rRNA pseudouridine synthase D complement(3463492..3464466) Photobacterium profundum SS9 3124797 YP_131152.1 CDS PBPRA3022 NC_006370.1 3464634 3465362 D hypothetical protein 3464634..3465362 Photobacterium profundum SS9 3122060 YP_131153.1 CDS PBPRA3023 NC_006370.1 3465778 3466128 D sigma-54 modulation protein 3465778..3466128 Photobacterium profundum SS9 3123508 YP_131154.1 CDS PBPRA3024 NC_006370.1 3466374 3467549 D chorismate mutase/prephenate dehydratase 3466374..3467549 Photobacterium profundum SS9 3125431 YP_131155.1 CDS tyrA NC_006370.1 3467617 3468744 R catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase complement(3467617..3468744) Photobacterium profundum SS9 3123212 YP_131156.2 CDS PBPRA3026 NC_006370.1 3468907 3469980 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(3468907..3469980) Photobacterium profundum SS9 3125033 YP_131157.1 CDS PBPRA3027 NC_006370.1 3470225 3471943 D cell autolysis regulator LytS 3470225..3471943 Photobacterium profundum SS9 3122331 YP_131158.1 CDS PBPRA3028 NC_006370.1 3472354 3473061 R DNA-binding protein complement(3472354..3473061) Photobacterium profundum SS9 3125282 YP_131159.1 CDS PBPRA3029 NC_006370.1 3473297 3473809 D hypothetical protein 3473297..3473809 Photobacterium profundum SS9 3123018 YP_131160.1 CDS PBPRA3030 NC_006370.1 3473763 3474221 D hypothetical protein 3473763..3474221 Photobacterium profundum SS9 3124842 YP_131161.1 CDS PBPRA3031 NC_006370.1 3474238 3474618 D YjgF family translation initiation inhibitor 3474238..3474618 Photobacterium profundum SS9 3122224 YP_131162.1 CDS PBPRA3032 NC_006370.1 3474679 3475971 D hypothetical protein 3474679..3475971 Photobacterium profundum SS9 3122669 YP_131163.1 CDS PBPRA3033 NC_006370.1 3476205 3476609 D transposase 3476205..3476609 Photobacterium profundum SS9 3124191 YP_131164.1 CDS PBPRA3034 NC_006370.1 3476795 3478267 D hypothetical protein 3476795..3478267 Photobacterium profundum SS9 3123299 YP_131165.1 CDS PBPRA3035 NC_006370.1 3478626 3479339 D unknown function; when overproduced it confers drug-resistance; two-component response-regulatory protein YehT 3478626..3479339 Photobacterium profundum SS9 3123417 YP_131166.1 CDS PBPRA3036 NC_006370.1 3479660 3480046 R hypothetical protein complement(3479660..3480046) Photobacterium profundum SS9 3124454 YP_131167.1 CDS PBPRA3037 NC_006370.1 3480535 3482061 D carbon starvation protein A 3480535..3482061 Photobacterium profundum SS9 3123419 YP_131168.1 CDS rplS NC_006370.1 3482462 3482821 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(3482462..3482821) Photobacterium profundum SS9 3123156 YP_131169.1 CDS trmD NC_006370.1 3482852 3483601 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(3482852..3483601) Photobacterium profundum SS9 3124579 YP_131170.1 CDS rimM NC_006370.1 3483628 3484161 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(3483628..3484161) Photobacterium profundum SS9 3125346 YP_131171.1 CDS PBPRA3041 NC_006370.1 3484191 3484442 R ribosomal protein S16 complement(3484191..3484442) Photobacterium profundum SS9 3125441 YP_131172.1 CDS PBPRA3042 NC_006370.1 3484622 3485989 R signal recognition particle protein complement(3484622..3485989) Photobacterium profundum SS9 3123316 YP_131173.1 CDS PBPRA3043 NC_006370.1 3486160 3486936 D hypothetical protein 3486160..3486936 Photobacterium profundum SS9 3124913 YP_131174.1 CDS PBPRA3044 NC_006370.1 3487023 3488300 D Mg2+ and Co2+ transporter CorB 3487023..3488300 Photobacterium profundum SS9 3125040 YP_131175.1 CDS PBPRA3045 NC_006370.1 3488390 3488917 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(3488390..3488917) Photobacterium profundum SS9 3125199 YP_131176.1 CDS PBPRA3046 NC_006370.1 3488978 3489619 R hypothetical protein complement(3488978..3489619) Photobacterium profundum SS9 3124943 YP_131177.1 CDS PBPRA3047 NC_006370.1 3489785 3491359 R involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase complement(3489785..3491359) Photobacterium profundum SS9 3125122 YP_131178.1 CDS PBPRA3048 NC_006370.1 3491505 3494351 R insulinase family protease complement(3491505..3494351) Photobacterium profundum SS9 3125439 YP_131179.1 CDS PBPRA3049 NC_006370.1 3494363 3494794 R hypothetical protein complement(3494363..3494794) Photobacterium profundum SS9 3122837 YP_131180.1 CDS PBPRA3050 NC_006370.1 3495215 3496345 R oxaloacetate decarboxylase, beta subunit complement(3495215..3496345) Photobacterium profundum SS9 3123268 YP_131181.1 CDS PBPRA3051 NC_006370.1 3496355 3498130 R catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase complement(3496355..3498130) Photobacterium profundum SS9 3123927 YP_131182.1 CDS PBPRA3052 NC_006370.1 3498174 3498422 R oxaloacetate decarboxylase subunit gamma complement(3498174..3498422) Photobacterium profundum SS9 3124548 YP_131183.1 CDS PBPRA3065 NC_006370.1 3500838 3501035 R affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator complement(3500838..3501035) Photobacterium profundum SS9 3125175 YP_131184.1 CDS PBPRA3066 NC_006370.1 3501121 3502299 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; aspartate kinase complement(3501121..3502299) Photobacterium profundum SS9 3123648 YP_131185.1 CDS alaS NC_006370.1 3502316 3505036 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(3502316..3505036) Photobacterium profundum SS9 3124267 YP_131186.1 CDS recA NC_006370.1 3505387 3506457 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(3505387..3506457) Photobacterium profundum SS9 3123155 YP_131187.1 CDS PBPRA3069 NC_006370.1 3506571 3507062 R CinA-related protein complement(3506571..3507062) Photobacterium profundum SS9 3123716 YP_131188.1 CDS PBPRA3070 NC_006370.1 3507285 3509855 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 3507285..3509855 Photobacterium profundum SS9 3122171 YP_131189.1 CDS PBPRA3071 NC_006370.1 3509986 3511014 R RNA polymerase sigma-38 factor complement(3509986..3511014) Photobacterium profundum SS9 3123121 YP_131190.1 CDS PBPRA3072 NC_006370.1 3511040 3511948 R lipoprotein NlpD complement(3511040..3511948) Photobacterium profundum SS9 3125368 YP_131191.1 CDS pcm NC_006370.1 3511965 3512594 R catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase complement(3511965..3512594) Photobacterium profundum SS9 3123849 YP_131192.1 CDS surE NC_006370.1 3512597 3513370 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(3512597..3513370) Photobacterium profundum SS9 3125414 YP_131193.1 CDS truD NC_006370.1 3513327 3514397 R catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D complement(3513327..3514397) Photobacterium profundum SS9 3125315 YP_131194.1 CDS ispF NC_006370.1 3514411 3514884 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(3514411..3514884) Photobacterium profundum SS9 3123324 YP_131195.1 CDS PBPRA3077 NC_006370.1 3514890 3515594 R 2-C-methyl-D-erythritol 4-phosphatecytidylyltransferase complement(3514890..3515594) Photobacterium profundum SS9 3124816 YP_131196.1 CDS PBPRA3078 NC_006370.1 3515628 3515915 R hypothetical protein complement(3515628..3515915) Photobacterium profundum SS9 3125195 YP_131197.1 CDS eno NC_006370.1 3516160 3517461 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(3516160..3517461) Photobacterium profundum SS9 3124764 YP_131198.1 CDS pyrG NC_006370.1 3517545 3519182 R CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(3517545..3519182) Photobacterium profundum SS9 3124318 YP_131199.1 CDS mazG NC_006370.1 3519416 3520234 R functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase complement(3519416..3520234) Photobacterium profundum SS9 3122587 YP_131200.1 CDS PBPRA3082 NC_006370.1 3520367 3522598 R GTP pyrophosphokinase complement(3520367..3522598) Photobacterium profundum SS9 3123892 YP_131201.1 CDS rumA NC_006370.1 3522640 3524055 R in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase complement(3522640..3524055) Photobacterium profundum SS9 3123178 YP_131202.2 CDS PBPRA3084 NC_006370.1 3524161 3526944 D part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA 3524161..3526944 Photobacterium profundum SS9 3125365 YP_131203.1 CDS acpS NC_006370.1 3527086 3527466 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(3527086..3527466) Photobacterium profundum SS9 3123579 YP_131204.1 CDS PBPRA3086 NC_006370.1 3527466 3528197 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(3527466..3528197) Photobacterium profundum SS9 3123572 YP_131205.1 CDS recO NC_006370.1 3528194 3528904 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO complement(3528194..3528904) Photobacterium profundum SS9 3122510 YP_131206.1 CDS era NC_006370.1 3528913 3529818 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(3528913..3529818) Photobacterium profundum SS9 3122041 YP_131207.1 CDS rnc NC_006370.1 3529815 3530489 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(3529815..3530489) Photobacterium profundum SS9 3124081 YP_131208.1 CDS PBPRA3090 NC_006370.1 3530500 3531399 R signal peptidase I complement(3530500..3531399) Photobacterium profundum SS9 3123481 YP_131209.1 CDS PBPRA3091 NC_006370.1 3531552 3533345 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(3531552..3533345) Photobacterium profundum SS9 3122026 YP_131210.1 CDS PBPRA3092 NC_006370.1 3533422 3533919 R hypothetical protein complement(3533422..3533919) Photobacterium profundum SS9 3123171 YP_131211.1 CDS rseB NC_006370.1 3533916 3534911 R periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; periplasmic negative regulator of sigmaE complement(3533916..3534911) Photobacterium profundum SS9 3124464 YP_131212.1 CDS PBPRA3094 NC_006370.1 3534911 3535609 R sigma-E factor negative regulatory protein RseA complement(3534911..3535609) Photobacterium profundum SS9 3125136 YP_131213.1 CDS PBPRA3095 NC_006370.1 3535634 3536212 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(3535634..3536212) Photobacterium profundum SS9 3124802 YP_131214.1 CDS PBPRA3096 NC_006370.1 3536325 3536573 D hypothetical protein 3536325..3536573 Photobacterium profundum SS9 3125112 YP_131215.1 CDS PBPRA3097 NC_006370.1 3537010 3538674 D catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 3537010..3538674 Photobacterium profundum SS9 3124587 YP_131216.1 CDS PBPRA3098 NC_006370.1 3538789 3539208 R cell shape-determining protein complement(3538789..3539208) Photobacterium profundum SS9 3124408 YP_131217.1 CDS PBPRA3099 NC_006370.1 3539177 3539443 R hypothetical protein complement(3539177..3539443) Photobacterium profundum SS9 3123700 YP_131218.1 CDS PBPRA3100 NC_006370.1 3539793 3540782 D hypothetical protein 3539793..3540782 Photobacterium profundum SS9 3123712 YP_131219.1 CDS PBPRA3101 NC_006370.1 3540784 3541245 D hypothetical protein 3540784..3541245 Photobacterium profundum SS9 3124940 YP_131220.1 CDS PBPRA3102 NC_006370.1 3541666 3543546 D hypothetical protein 3541666..3543546 Photobacterium profundum SS9 3124456 YP_131221.1 CDS PBPRA3103 NC_006370.1 3543558 3544256 D hypothetical protein 3543558..3544256 Photobacterium profundum SS9 3124295 YP_131222.1 CDS PBPRA3104 NC_006370.1 3544253 3544867 D hypothetical protein 3544253..3544867 Photobacterium profundum SS9 3123602 YP_131223.1 CDS PBPRA3105 NC_006370.1 3545046 3545372 D hypothetical protein 3545046..3545372 Photobacterium profundum SS9 3125370 YP_131224.1 CDS PBPRA3106 NC_006370.1 3545450 3546730 D hypothetical protein 3545450..3546730 Photobacterium profundum SS9 3122559 YP_131225.1 CDS PBPRA3107 NC_006370.1 3546745 3547068 D hypothetical protein 3546745..3547068 Photobacterium profundum SS9 3123908 YP_131226.1 CDS PBPRA3108 NC_006370.1 3547407 3547673 D hypothetical protein 3547407..3547673 Photobacterium profundum SS9 3122973 YP_131227.1 CDS PBPRA3110 NC_006370.1 3549022 3549459 D hypothetical protein 3549022..3549459 Photobacterium profundum SS9 3124272 YP_131228.1 CDS PBPRA3111 NC_006370.1 3549604 3550563 D LysR family transcriptional regulator 3549604..3550563 Photobacterium profundum SS9 3122910 YP_131229.1 CDS PBPRA3112 NC_006370.1 3550708 3550902 R hypothetical protein complement(3550708..3550902) Photobacterium profundum SS9 3122985 YP_131230.1 CDS PBPRA3113 NC_006370.1 3550899 3551375 R hypothetical protein complement(3550899..3551375) Photobacterium profundum SS9 3122931 YP_131231.1 CDS PBPRA3114 NC_006370.1 3551377 3551754 R hypothetical protein complement(3551377..3551754) Photobacterium profundum SS9 3124059 YP_131232.1 CDS PBPRA3115 NC_006370.1 3552240 3552443 D hypothetical protein 3552240..3552443 Photobacterium profundum SS9 3123861 YP_131233.1 CDS PBPRA3116 NC_006370.1 3552560 3552952 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(3552560..3552952) Photobacterium profundum SS9 3124616 YP_131234.1 CDS PBPRA3117 NC_006370.1 3553238 3554446 R catalyzes the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone from 2-octaprenyl-6-methoxyphenol; 2-octaprenyl-6-methoxyphenol hydroxylase complement(3553238..3554446) Photobacterium profundum SS9 3123803 YP_131235.1 CDS PBPRA3118 NC_006370.1 3554443 3555651 R Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(3554443..3555651) Photobacterium profundum SS9 3125109 YP_131236.1 CDS PBPRA3119 NC_006370.1 3555731 3556399 R the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein complement(3555731..3556399) Photobacterium profundum SS9 3122863 YP_131237.1 CDS PBPRA3120 NC_006370.1 3556674 3556976 D hypothetical protein 3556674..3556976 Photobacterium profundum SS9 3124507 YP_131238.1 CDS PBPRA3121 NC_006370.1 3557263 3557868 D 5-formyltetrahydrofolate cyclo-ligase 3557263..3557868 Photobacterium profundum SS9 3122917 YP_131239.1 CDS PBPRA3122 NC_006370.1 3558149 3558808 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 3558149..3558808 Photobacterium profundum SS9 3125286 YP_131240.1 CDS PBPRA3123 NC_006370.1 3559070 3559666 D phosphoglycerate dehydrogenase 3559070..3559666 Photobacterium profundum SS9 3124847 YP_131241.1 CDS PBPRA3124 NC_006370.1 3559632 3560300 D D-3-phosphoglycerate dehydrogenase 3559632..3560300 Photobacterium profundum SS9 3123263 YP_131242.1 CDS PBPRA3125 NC_006370.1 3560361 3561062 R hypothetical protein complement(3560361..3561062) Photobacterium profundum SS9 3123183 YP_131243.1 CDS PBPRA3126 NC_006370.1 3561247 3562149 R specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein complement(3561247..3562149) Photobacterium profundum SS9 3125333 YP_131244.1 CDS PBPRA3127 NC_006370.1 3562303 3562938 D lysine efflux permease 3562303..3562938 Photobacterium profundum SS9 3122475 YP_131245.1 CDS PBPRA3128 NC_006370.1 3562925 3563455 D DNA-binding protein 3562925..3563455 Photobacterium profundum SS9 3123926 YP_131246.1 CDS PBPRA3129 NC_006370.1 3563549 3564433 R hypothetical protein complement(3563549..3564433) Photobacterium profundum SS9 3122675 YP_131247.1 CDS PBPRA3130 NC_006370.1 3564781 3565857 R catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase complement(3564781..3565857) Photobacterium profundum SS9 3123169 YP_131248.1 CDS pgk NC_006370.1 3566003 3567181 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(3566003..3567181) Photobacterium profundum SS9 3124532 YP_131249.2 CDS PBPRA3132 NC_006370.1 3567239 3568321 R NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase complement(3567239..3568321) Photobacterium profundum SS9 3123661 YP_131250.1 CDS PBPRA3133 NC_006370.1 3568597 3570609 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(3568597..3570609) Photobacterium profundum SS9 3124478 YP_131251.1 CDS PBPRA3134 NC_006370.1 3571009 3572163 D methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 3571009..3572163 Photobacterium profundum SS9 3124973 YP_131252.1 CDS PBPRA3135 NC_006370.1 3572274 3572756 D hypothetical protein 3572274..3572756 Photobacterium profundum SS9 3123108 YP_131253.1 CDS PBPRA3136 NC_006370.1 3572931 3573674 D extracellular deoxyribonucleaseprecursor 3572931..3573674 Photobacterium profundum SS9 3123271 YP_131254.2 CDS PBPRA3137 NC_006370.1 3573880 3574611 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 3573880..3574611 Photobacterium profundum SS9 3122941 YP_131255.1 CDS PBPRA3138 NC_006370.1 3574641 3575588 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 3574641..3575588 Photobacterium profundum SS9 3124987 YP_131256.1 CDS PBPRA3139 NC_006370.1 3576288 3576749 D hypothetical protein 3576288..3576749 Photobacterium profundum SS9 3123721 YP_131257.1 CDS PBPRA3140 NC_006370.1 3576746 3577174 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 3576746..3577174 Photobacterium profundum SS9 3123247 YP_131258.1 CDS PBPRA3141 NC_006370.1 3577569 3578678 R twitching motility protein PilT complement(3577569..3578678) Photobacterium profundum SS9 3122653 YP_131259.1 CDS PBPRA3142 NC_006370.1 3578747 3579784 R twitching motility protein PilT complement(3578747..3579784) Photobacterium profundum SS9 3122427 YP_131260.1 CDS PBPRA3143 NC_006370.1 3579774 3580508 D TIM-barrel fold family protein 3579774..3580508 Photobacterium profundum SS9 3124570 YP_131261.1 CDS PBPRA3144 NC_006370.1 3580558 3581376 D catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 3580558..3581376 Photobacterium profundum SS9 3124827 YP_131262.1 CDS PBPRA3145 NC_006370.1 3581386 3581748 D hypothetical protein 3581386..3581748 Photobacterium profundum SS9 3124641 YP_131263.1 CDS PBPRA3146 NC_006370.1 3581926 3582231 D hypothetical protein 3581926..3582231 Photobacterium profundum SS9 3124583 YP_131264.1 CDS PBPRA3147 NC_006370.1 3582322 3582750 D hypothetical protein 3582322..3582750 Photobacterium profundum SS9 3124770 YP_131265.2 CDS PBPRA3148 NC_006370.1 3583120 3583713 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 3583120..3583713 Photobacterium profundum SS9 3124833 YP_131266.1 CDS PBPRA3149 NC_006370.1 3583713 3584867 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 3583713..3584867 Photobacterium profundum SS9 3124928 YP_131267.1 CDS PBPRA3150 NC_006370.1 3584948 3585358 R hypothetical protein complement(3584948..3585358) Photobacterium profundum SS9 3122462 YP_131268.1 CDS PBPRA3151 NC_006370.1 3585407 3586327 R catalyzes the formation of glutamate from glutamine; glutaminase complement(3585407..3586327) Photobacterium profundum SS9 3125380 YP_131269.1 CDS trmB NC_006370.1 3586486 3587223 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(3586486..3587223) Photobacterium profundum SS9 3125253 YP_131270.1 CDS PBPRA3153 NC_006370.1 3587271 3587552 R hypothetical protein complement(3587271..3587552) Photobacterium profundum SS9 3124630 YP_131271.1 CDS PBPRA3154 NC_006370.1 3587579 3588538 D A/G-specific adenine glycosylase 3587579..3588538 Photobacterium profundum SS9 3123256 YP_131272.1 CDS PBPRA3155 NC_006370.1 3588677 3588949 D hypothetical protein 3588677..3588949 Photobacterium profundum SS9 3125091 YP_131273.1 CDS PBPRA3156 NC_006370.1 3589041 3590204 D membrane-bound lytic mureintransglycosylase C 3589041..3590204 Photobacterium profundum SS9 3124417 YP_131274.1 CDS PBPRA3166 NC_006370.1 3591849 3593105 D hypothetical protein 3591849..3593105 Photobacterium profundum SS9 3123840 YP_131275.1 CDS PBPRA3167 NC_006370.1 3593196 3595619 R penicillin-binding protein 1B complement(3593196..3595619) Photobacterium profundum SS9 3122686 YP_131276.1 CDS PBPRA3168 NC_006370.1 3595813 3598323 R similar in sequence to the ATP-dependent RNA helicase HrpA; ATP-dependent RNA helicase HrpB complement(3595813..3598323) Photobacterium profundum SS9 3122068 YP_131277.1 CDS PBPRA3169 NC_006370.1 3598420 3599049 D hypothetical protein 3598420..3599049 Photobacterium profundum SS9 3122242 YP_131278.1 CDS PBPRA3170 NC_006370.1 3599096 3599800 D Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 3599096..3599800 Photobacterium profundum SS9 3123556 YP_131279.1 CDS PBPRA3171 NC_006370.1 3599937 3600386 D DnaK suppressor protein 3599937..3600386 Photobacterium profundum SS9 3122509 YP_131280.1 CDS PBPRA3172 NC_006370.1 3600511 3601443 D this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase 3600511..3601443 Photobacterium profundum SS9 3124951 YP_131281.1 CDS PBPRA3173 NC_006370.1 3601619 3602968 D polyA polymerase 3601619..3602968 Photobacterium profundum SS9 3125306 YP_131282.1 CDS PBPRA3174 NC_006370.1 3602965 3603450 D 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase 3602965..3603450 Photobacterium profundum SS9 3122288 YP_131283.1 CDS panB NC_006370.1 3603478 3604272 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 3603478..3604272 Photobacterium profundum SS9 3122934 YP_131284.1 CDS panC NC_006370.1 3604282 3605169 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 3604282..3605169 Photobacterium profundum SS9 3122642 YP_131285.1 CDS PBPRA3177 NC_006370.1 3605274 3606044 R permease complement(3605274..3606044) Photobacterium profundum SS9 3124714 YP_131286.1 CDS PBPRA3178 NC_006370.1 3606041 3606979 R ABC transporter ATP-binding protein complement(3606041..3606979) Photobacterium profundum SS9 3123708 YP_131287.1 CDS PBPRA3179 NC_006370.1 3607107 3607763 D carbonic anhydrase 3607107..3607763 Photobacterium profundum SS9 3122394 YP_131288.2 CDS PBPRA3180 NC_006370.1 3607879 3608412 R Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase complement(3607879..3608412) Photobacterium profundum SS9 3122836 YP_131289.1 CDS PBPRA3181 NC_006370.1 3608641 3609249 D hypothetical protein 3608641..3609249 Photobacterium profundum SS9 3122330 YP_131290.1 CDS PBPRA3182 NC_006370.1 3609345 3610385 R iron(III) ABC transporter, ATP-binding protein complement(3609345..3610385) Photobacterium profundum SS9 3122257 YP_131291.1 CDS PBPRA3183 NC_006370.1 3610385 3612013 R iron(III) ABC transporter, permease protein complement(3610385..3612013) Photobacterium profundum SS9 3121950 YP_131292.1 CDS PBPRA3184 NC_006370.1 3612210 3613268 R ABC transporter, periplasmic iron-compound-binding protein complement(3612210..3613268) Photobacterium profundum SS9 3123646 YP_131293.1 CDS PBPRA3185 NC_006370.1 3613428 3614657 R ammonium transporter complement(3613428..3614657) Photobacterium profundum SS9 3122237 YP_131294.1 CDS PBPRA3186 NC_006370.1 3614711 3615049 R nitrogen regulatory protein P-II complement(3614711..3615049) Photobacterium profundum SS9 3123014 YP_131295.1 CDS PBPRA3187 NC_006370.1 3615238 3615606 R hypothetical protein complement(3615238..3615606) Photobacterium profundum SS9 3122166 YP_131296.1 CDS PBPRA3188 NC_006370.1 3615681 3616838 D sugar diacid utilization regulator 3615681..3616838 Photobacterium profundum SS9 3122643 YP_131297.1 CDS PBPRA3189 NC_006370.1 3617018 3618283 D permease 3617018..3618283 Photobacterium profundum SS9 3123507 YP_131298.1 CDS PBPRA3190 NC_006370.1 3618296 3619432 D glycerate kinase 3618296..3619432 Photobacterium profundum SS9 3121989 YP_131299.1 CDS PBPRA3191 NC_006370.1 3619602 3622199 R catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase complement(3619602..3622199) Photobacterium profundum SS9 3123564 YP_131300.1 CDS PBPRA3192 NC_006370.1 3622437 3624767 R hypothetical protein complement(3622437..3624767) Photobacterium profundum SS9 3122816 YP_131301.1 CDS PBPRA3193 NC_006370.1 3624832 3626748 D methyl-accepting chemotaxis protein 3624832..3626748 Photobacterium profundum SS9 3122593 YP_131302.1 CDS PBPRA3194 NC_006370.1 3626827 3628269 R E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(3626827..3628269) Photobacterium profundum SS9 3122078 YP_131303.2 CDS aceF NC_006370.1 3628517 3630409 R E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; dihydrolipoamide acetyltransferase complement(3628517..3630409) Photobacterium profundum SS9 3121962 YP_131304.1 CDS aceE NC_006370.1 3630423 3633089 R E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 complement(3630423..3633089) Photobacterium profundum SS9 3122871 YP_131305.1 CDS pdhR NC_006370.1 3633170 3633943 R activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR complement(3633170..3633943) Photobacterium profundum SS9 3125491 YP_131306.1 CDS PBPRA3198 NC_006370.1 3634275 3634832 R N-acetyl-anhydromuranmyl-L-alanine amidase complement(3634275..3634832) Photobacterium profundum SS9 3121986 YP_131307.1 CDS PBPRA3199 NC_006370.1 3634948 3635898 D catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; quinolinate phosphoribosyltransferase 3634948..3635898 Photobacterium profundum SS9 3122434 YP_131308.1 CDS PBPRA3200 NC_006370.1 3636200 3636607 D pilin PilA 3636200..3636607 Photobacterium profundum SS9 3124839 YP_131309.1 CDS PBPRA3201 NC_006370.1 3636660 3638297 D type IV pilin assembly protein PilB 3636660..3638297 Photobacterium profundum SS9 3121985 YP_131310.1 CDS PBPRA3202 NC_006370.1 3638397 3639617 D Type IV pilin biogenesis protein 3638397..3639617 Photobacterium profundum SS9 3125454 YP_131311.1 CDS PBPRA3203 NC_006370.1 3639765 3640664 D leader peptidase PilD 3639765..3640664 Photobacterium profundum SS9 3123500 YP_131312.1 CDS PBPRA3204 NC_006370.1 3640667 3641269 D dephospho-CoA kinase 3640667..3641269 Photobacterium profundum SS9 3123331 YP_131313.1 CDS PBPRA3205 NC_006370.1 3641324 3642061 D hypothetical protein 3641324..3642061 Photobacterium profundum SS9 3123015 YP_131314.1 CDS PBPRA3206 NC_006370.1 3642055 3642285 D zinc-binding protein 3642055..3642285 Photobacterium profundum SS9 3123210 YP_131315.1 CDS PBPRA3207 NC_006370.1 3642309 3642728 R mutator MutT protein complement(3642309..3642728) Photobacterium profundum SS9 3123358 YP_131316.1 CDS PBPRA3208 NC_006370.1 3642881 3645613 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(3642881..3645613) Photobacterium profundum SS9 3124348 YP_131317.1 CDS PBPRA3209 NC_006370.1 3645968 3646441 D hypothetical protein 3645968..3646441 Photobacterium profundum SS9 3123606 YP_131318.2 CDS lpxC NC_006370.1 3646526 3647440 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(3646526..3647440) Photobacterium profundum SS9 3123972 YP_131319.1 CDS PBPRA3211 NC_006370.1 3647625 3648809 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(3647625..3648809) Photobacterium profundum SS9 3122884 YP_131320.1 CDS ftsA NC_006370.1 3648843 3650099 R ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane; cell division protein FtsA complement(3648843..3650099) Photobacterium profundum SS9 3122336 YP_131321.1 CDS PBPRA3213 NC_006370.1 3650115 3650876 R cell division protein FtsQ complement(3650115..3650876) Photobacterium profundum SS9 3122896 YP_131322.1 CDS murC NC_006370.1 3651142 3652605 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(3651142..3652605) Photobacterium profundum SS9 3124019 YP_131323.1 CDS murG NC_006370.1 3652618 3653700 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(3652618..3653700) Photobacterium profundum SS9 3123531 YP_131324.1 CDS PBPRA3216 NC_006370.1 3653669 3654904 R cell division protein FtsW complement(3653669..3654904) Photobacterium profundum SS9 3123000 YP_131325.1 CDS murD NC_006370.1 3654898 3656241 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(3654898..3656241) Photobacterium profundum SS9 3125440 YP_131326.1 CDS mraY NC_006370.1 3656242 3657324 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(3656242..3657324) Photobacterium profundum SS9 3122344 YP_131327.1 CDS PBPRA3219 NC_006370.1 3657321 3658727 R UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-- D-alanyl-D-alanyl ligase complement(3657321..3658727) Photobacterium profundum SS9 3124522 YP_131328.1 CDS PBPRA3220 NC_006370.1 3658724 3660244 R UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(3658724..3660244) Photobacterium profundum SS9 3122077 YP_131329.1 CDS PBPRA3221 NC_006370.1 3660259 3662013 R division protein FtsI; penicillin-binding protein complement(3660259..3662013) Photobacterium profundum SS9 3124447 YP_131330.1 CDS PBPRA3222 NC_006370.1 3662017 3662337 R cell division protein FtsL complement(3662017..3662337) Photobacterium profundum SS9 3122190 YP_131331.1 CDS mraW NC_006370.1 3662334 3663281 R S-adenosyl-methyltransferase MraW complement(3662334..3663281) Photobacterium profundum SS9 3124540 YP_131332.1 CDS PBPRA3224 NC_006370.1 3663352 3663657 D hypothetical protein 3663352..3663657 Photobacterium profundum SS9 3122387 YP_131333.1 CDS PBPRA3225 NC_006370.1 3663957 3664199 D hypothetical protein 3663957..3664199 Photobacterium profundum SS9 3124544 YP_131334.1 CDS PBPRA3226 NC_006370.1 3664347 3665207 R methyltransferase complement(3664347..3665207) Photobacterium profundum SS9 3125419 YP_131335.1 CDS PBPRA3227 NC_006370.1 3665260 3667101 D lipoprotein 3665260..3667101 Photobacterium profundum SS9 3123366 YP_131336.1 CDS PBPRA3228 NC_006370.1 3667076 3667453 D hypothetical protein 3667076..3667453 Photobacterium profundum SS9 3125046 YP_131337.1 CDS PBPRA3229 NC_006370.1 3667456 3668046 D phosphoheptose isomerase 3667456..3668046 Photobacterium profundum SS9 3123376 YP_131338.1 CDS PBPRA3230 NC_006370.1 3668050 3668589 D hemolysin 3668050..3668589 Photobacterium profundum SS9 3122959 YP_131339.1 CDS PBPRA3231 NC_006370.1 3668664 3669170 R ClpXP protease specificity-enhancing factor complement(3668664..3669170) Photobacterium profundum SS9 3123100 YP_131340.1 CDS sspA NC_006370.1 3669171 3669809 R transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A complement(3669171..3669809) Photobacterium profundum SS9 3124666 YP_131341.1 CDS PBPRA3233 NC_006370.1 3669897 3670634 R ubiquinol--cytochrome c reductase, cytochrome c1 complement(3669897..3670634) Photobacterium profundum SS9 3123916 YP_131342.1 CDS PBPRA3234 NC_006370.1 3670631 3671896 R ubiquinol-cytochrome c reductase, cytochrome B complement(3670631..3671896) Photobacterium profundum SS9 3124488 YP_131343.1 CDS PBPRA3235 NC_006370.1 3671896 3672486 R ubiquinol-cytochrome c reductase,iron-sulfur subunit complement(3671896..3672486) Photobacterium profundum SS9 3124020 YP_131344.1 CDS PBPRA3236 NC_006370.1 3672816 3673223 R 30S ribosomal protein S9 complement(3672816..3673223) Photobacterium profundum SS9 3124018 YP_131345.1 CDS rplM NC_006370.1 3673224 3673652 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(3673224..3673652) Photobacterium profundum SS9 3122904 YP_131346.1 CDS PBPRA3238 NC_006370.1 3673941 3675044 R ATPase complement(3673941..3675044) Photobacterium profundum SS9 3125313 YP_131347.1 CDS PBPRA3239 NC_006370.1 3675223 3675660 D cytochrome d ubiquinol oxidase subunit III 3675223..3675660 Photobacterium profundum SS9 3125198 YP_131348.1 CDS PBPRA3240 NC_006370.1 3675776 3677143 D DegQ serine protease 3675776..3677143 Photobacterium profundum SS9 3123486 YP_131349.1 CDS PBPRA3241 NC_006370.1 3677406 3678494 D DegS serine protease 3677406..3678494 Photobacterium profundum SS9 3123264 YP_131350.1 CDS PBPRA3242 NC_006370.1 3678615 3679877 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(3678615..3679877) Photobacterium profundum SS9 3124297 YP_131351.1 CDS PBPRA3243 NC_006370.1 3679885 3680139 R BolA/YrbA family protein, transcriptional regulator complement(3679885..3680139) Photobacterium profundum SS9 3124782 YP_131352.1 CDS PBPRA3244 NC_006370.1 3680159 3680470 R anti-sigma B factor antagonist complement(3680159..3680470) Photobacterium profundum SS9 3122177 YP_131353.1 CDS PBPRA3245 NC_006370.1 3680463 3681107 R hypothetical protein complement(3680463..3681107) Photobacterium profundum SS9 3122075 YP_131354.1 CDS PBPRA3246 NC_006370.1 3681119 3681619 R ABC transporter complement(3681119..3681619) Photobacterium profundum SS9 3122064 YP_131355.1 CDS PBPRA3247 NC_006370.1 3681687 3682469 R hypothetical protein complement(3681687..3682469) Photobacterium profundum SS9 3122423 YP_131356.1 CDS PBPRA3248 NC_006370.1 3682688 3683503 R ABC transporter, ATP-binding protein complement(3682688..3683503) Photobacterium profundum SS9 3123882 YP_131357.1 CDS PBPRA3249 NC_006370.1 3683999 3684964 D Ca2+/Na+ antiporter 3683999..3684964 Photobacterium profundum SS9 3122481 YP_131358.1 CDS PBPRA3250 NC_006370.1 3684977 3685948 D sugar phosphate isomerase 3684977..3685948 Photobacterium profundum SS9 3122542 YP_131359.1 CDS PBPRA3251 NC_006370.1 3685948 3686505 D forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3685948..3686505 Photobacterium profundum SS9 3122558 YP_131360.1 CDS PBPRA3252 NC_006370.1 3686502 3687065 D hypothetical protein 3686502..3687065 Photobacterium profundum SS9 3122733 YP_131361.1 CDS PBPRA3253 NC_006370.1 3687046 3687543 D hypothetical protein 3687046..3687543 Photobacterium profundum SS9 3124414 YP_131362.1 CDS PBPRA3254 NC_006370.1 3687553 3688278 D ABC transporter, ATP-binding protein 3687553..3688278 Photobacterium profundum SS9 3123157 YP_131363.1 CDS PBPRA3255 NC_006370.1 3688332 3689846 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 3688332..3689846 Photobacterium profundum SS9 3122955 YP_131364.1 CDS PBPRA3256 NC_006370.1 3689867 3690160 D sigma-54 modulation protein 3689867..3690160 Photobacterium profundum SS9 3123403 YP_131365.1 CDS PBPRA3257 NC_006370.1 3690181 3690612 D nitrogen regulatory IIA protein PtsN 3690181..3690612 Photobacterium profundum SS9 3123816 YP_131366.1 CDS PBPRA3258 NC_006370.1 3690649 3691497 D hypothetical protein 3690649..3691497 Photobacterium profundum SS9 3124458 YP_131367.1 CDS PBPRA3259 NC_006370.1 3691497 3691772 D phosphocarrier protein NPr 3691497..3691772 Photobacterium profundum SS9 3123657 YP_131368.1 CDS PBPRA3260 NC_006370.1 3691993 3693351 D magnesium transporter 3691993..3693351 Photobacterium profundum SS9 3123904 YP_131369.1 CDS PBPRA3261 NC_006370.1 3693475 3694818 R protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD; peptidase PmbA complement(3693475..3694818) Photobacterium profundum SS9 3123522 YP_131370.1 CDS PBPRA3262 NC_006370.1 3695010 3695465 D hypothetical protein 3695010..3695465 Photobacterium profundum SS9 3124861 YP_131371.1 CDS PBPRA3263 NC_006370.1 3695559 3697022 R TldD, Zn-dependent protease and theirinactivated homologs complement(3695559..3697022) Photobacterium profundum SS9 3124077 YP_131372.1 CDS PBPRA3264 NC_006370.1 3697023 3697841 R carbon-nitrogen hydrolase complement(3697023..3697841) Photobacterium profundum SS9 3124554 YP_131373.1 CDS PBPRA3265 NC_006370.1 3697890 3701780 R hypothetical protein complement(3697890..3701780) Photobacterium profundum SS9 3124256 YP_131374.1 CDS PBPRA3266 NC_006370.1 3701801 3703270 R involved in the processing of the 5'end of 16S rRNA; ribonuclease G complement(3701801..3703270) Photobacterium profundum SS9 3124395 YP_131375.1 CDS maf NC_006370.1 3703283 3703873 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(3703283..3703873) Photobacterium profundum SS9 3124313 YP_131376.1 CDS PBPRA3268 NC_006370.1 3703979 3704467 R part of cell wall structural complex MreBCD; transmembrane component; rod shape-determining protein MreD complement(3703979..3704467) Photobacterium profundum SS9 3124601 YP_131377.1 CDS PBPRA3269 NC_006370.1 3704457 3705317 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(3704457..3705317) Photobacterium profundum SS9 3124837 YP_131378.1 CDS PBPRA3270 NC_006370.1 3705358 3706401 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(3705358..3706401) Photobacterium profundum SS9 3125444 YP_131379.1 CDS PBPRA3271 NC_006370.1 3706516 3710058 R MSHA biogenesis protein MshQ complement(3706516..3710058) Photobacterium profundum SS9 3125312 YP_131380.1 CDS PBPRA3272 NC_006370.1 3710058 3710444 R hypothetical protein complement(3710058..3710444) Photobacterium profundum SS9 3125340 YP_131381.1 CDS PBPRA3273 NC_006370.1 3710467 3711180 R hypothetical protein complement(3710467..3711180) Photobacterium profundum SS9 3125395 YP_131382.1 CDS PBPRA3274 NC_006370.1 3711228 3711854 R pilin protein complement(3711228..3711854) Photobacterium profundum SS9 3125133 YP_131383.1 CDS PBPRA3275 NC_006370.1 3711851 3712354 R hypothetical protein complement(3711851..3712354) Photobacterium profundum SS9 3122638 YP_131384.1 CDS PBPRA3276 NC_006370.1 3712442 3712918 R MSHA pilin protein MshA complement(3712442..3712918) Photobacterium profundum SS9 3122888 YP_131385.1 CDS PBPRA3277 NC_006370.1 3712932 3713522 R MSHA pilin protein MshB complement(3712932..3713522) Photobacterium profundum SS9 3124858 YP_131386.1 CDS PBPRA3278 NC_006370.1 3713547 3713891 R hypothetical protein complement(3713547..3713891) Photobacterium profundum SS9 3124001 YP_131387.1 CDS PBPRA3279 NC_006370.1 3714013 3715236 R MSHA biogenesis protein MshG complement(3714013..3715236) Photobacterium profundum SS9 3124045 YP_131388.1 CDS PBPRA3280 NC_006370.1 3715244 3716956 R MSHA biogenesis protein MshE complement(3715244..3716956) Photobacterium profundum SS9 3124876 YP_131389.1 CDS PBPRA3281 NC_006370.1 3716961 3718223 R hypothetical protein complement(3716961..3718223) Photobacterium profundum SS9 3123275 YP_131390.1 CDS PBPRA3282 NC_006370.1 3718226 3719068 R type II secretory pathway protein ExeA complement(3718226..3719068) Photobacterium profundum SS9 3122846 YP_131391.1 CDS PBPRA3283 NC_006370.1 3719072 3720742 R MSHA biogenesis protein MshL complement(3719072..3720742) Photobacterium profundum SS9 3123865 YP_131392.1 CDS PBPRA3284 NC_006370.1 3720752 3721084 R MSHA biogenesis protein MshK complement(3720752..3721084) Photobacterium profundum SS9 3123176 YP_131393.1 CDS PBPRA3285 NC_006370.1 3721077 3721712 R MSHA biogenesis protein MshJ complement(3721077..3721712) Photobacterium profundum SS9 3124455 YP_131394.1 CDS PBPRA3286 NC_006370.1 3721709 3723184 R MSHA biogenesis protein MshI complement(3721709..3723184) Photobacterium profundum SS9 3123023 YP_131395.1 CDS PBPRA3287 NC_006370.1 3723342 3725285 R regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD complement(3723342..3725285) Photobacterium profundum SS9 3123294 YP_131396.2 CDS PBPRA3289 NC_006370.1 3726755 3727306 R binds to single stranded DNA and PriA helcase facilitate replication restart; single-stranded DNA-binding protein complement(3726755..3727306) Photobacterium profundum SS9 3124213 YP_131397.1 CDS uvrA NC_006370.1 3727669 3730494 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 3727669..3730494 Photobacterium profundum SS9 3123710 YP_131398.1 CDS PBPRA3291 NC_006370.1 3730593 3732362 D hypothetical protein 3730593..3732362 Photobacterium profundum SS9 3124818 YP_131399.1 CDS PBPRA3292 NC_006370.1 3732443 3733561 R Serine-pyruvate aminotransferase/ aspartate aminotransferase complement(3732443..3733561) Photobacterium profundum SS9 3124084 YP_131400.1 CDS PBPRA3293 NC_006370.1 3734130 3735509 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase 3734130..3735509 Photobacterium profundum SS9 3124754 YP_131401.1 CDS metH NC_006370.1 3735593 3739264 R one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase complement(3735593..3739264) Photobacterium profundum SS9 3124469 YP_131402.1 CDS PBPRA3295 NC_006370.1 3739632 3740741 D Na+/H+ antiporter 3739632..3740741 Photobacterium profundum SS9 3124189 YP_131403.1 CDS PBPRA3296 NC_006370.1 3740910 3741242 D hypothetical protein 3740910..3741242 Photobacterium profundum SS9 3123214 YP_131404.1 CDS PBPRA3297 NC_006370.1 3741244 3741807 D transposase 3741244..3741807 Photobacterium profundum SS9 3125485 YP_131405.1 CDS PBPRA3298 NC_006370.1 3741886 3742356 D transposase and inactivated derivative 3741886..3742356 Photobacterium profundum SS9 3125457 YP_131406.1 CDS PBPRA3299 NC_006370.1 3742358 3742921 D transposase and inactivated derivative 3742358..3742921 Photobacterium profundum SS9 3125223 YP_131407.1 CDS PBPRA3307 NC_006370.1 3754796 3755539 R sulfite synthesis pathway protein complement(3754796..3755539) Photobacterium profundum SS9 3122377 YP_131408.1 CDS PBPRA3308 NC_006370.1 3755552 3756178 R converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase complement(3755552..3756178) Photobacterium profundum SS9 3122429 YP_131409.1 CDS PBPRA3309 NC_006370.1 3756211 3757974 R sodium/sulfate symporter complement(3756211..3757974) Photobacterium profundum SS9 3123893 YP_131410.1 CDS cysN NC_006370.1 3757943 3759373 R may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 complement(3757943..3759373) Photobacterium profundum SS9 3122104 YP_131411.1 CDS PBPRA3311 NC_006370.1 3759384 3760304 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(3759384..3760304) Photobacterium profundum SS9 3121958 YP_131412.1 CDS PBPRA3312 NC_006370.1 3760306 3761715 R siroheme synthase complement(3760306..3761715) Photobacterium profundum SS9 3125518 YP_131413.1 CDS cpdB NC_006370.1 3762102 3764090 D periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein 3762102..3764090 Photobacterium profundum SS9 3122902 YP_131414.1 CDS PBPRA3314 NC_006370.1 3764191 3764757 D cAMP-binding proteins 3764191..3764757 Photobacterium profundum SS9 3123438 YP_131415.1 CDS PBPRA3315 NC_006370.1 3764862 3765314 D ElaA-like protein 3764862..3765314 Photobacterium profundum SS9 3123787 YP_131416.1 CDS PBPRA3316 NC_006370.1 3765405 3766127 R hypothetical protein complement(3765405..3766127) Photobacterium profundum SS9 3124114 YP_131417.1 CDS PBPRA3317 NC_006370.1 3766241 3766861 D peptidyl-prolyl cis-trans isomerase 3766241..3766861 Photobacterium profundum SS9 3124791 YP_131418.1 CDS PBPRA3318 NC_006370.1 3767038 3767529 D hypothetical protein 3767038..3767529 Photobacterium profundum SS9 3122898 YP_131419.1 CDS PBPRA3319 NC_006370.1 3767693 3768454 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase complement(3767693..3768454) Photobacterium profundum SS9 3124048 YP_131420.1 CDS PBPRA3320 NC_006370.1 3768447 3770138 R hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta complement(3768447..3770138) Photobacterium profundum SS9 3122708 YP_131421.1 CDS PBPRA3321 NC_006370.1 3770138 3771955 R sulfite reductase (NADPH) flavoprotein alpha-component complement(3770138..3771955) Photobacterium profundum SS9 3125530 YP_131422.1 CDS PBPRA3322 NC_006370.1 3772124 3772357 R hypothetical protein complement(3772124..3772357) Photobacterium profundum SS9 3124995 YP_131423.1 CDS PBPRA3323 NC_006370.1 3772474 3773124 R hypothetical protein complement(3772474..3773124) Photobacterium profundum SS9 3124850 YP_131424.1 CDS PBPRA3324 NC_006370.1 3773409 3773672 D hypothetical protein 3773409..3773672 Photobacterium profundum SS9 3124437 YP_131425.1 CDS PBPRA3325 NC_006370.1 3773714 3774754 R tRNA-dihydrouridine synthase A complement(3773714..3774754) Photobacterium profundum SS9 3122273 YP_131426.1 CDS PBPRA3326 NC_006370.1 3775256 3775702 D zinc uptake regulation protein 3775256..3775702 Photobacterium profundum SS9 3123327 YP_131427.1 CDS PBPRA3327 NC_006370.1 3775736 3776197 D hypothetical protein 3775736..3776197 Photobacterium profundum SS9 3121996 YP_131428.1 CDS pgi NC_006370.1 3776305 3777957 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(3776305..3777957) Photobacterium profundum SS9 3123057 YP_131429.1 CDS PBPRA3329 NC_006370.1 3778427 3779677 R hypothetical protein complement(3778427..3779677) Photobacterium profundum SS9 3124022 YP_131430.1 CDS alr NC_006370.1 3779702 3780781 R converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase complement(3779702..3780781) Photobacterium profundum SS9 3122161 YP_131431.1 CDS PBPRA3331 NC_006370.1 3780809 3782206 R unwinds double stranded DNA; replicative DNA helicase complement(3780809..3782206) Photobacterium profundum SS9 3122692 YP_131432.1 CDS PBPRA3332 NC_006370.1 3782453 3783208 D hypothetical protein 3782453..3783208 Photobacterium profundum SS9 3122701 YP_131433.1 CDS PBPRA3333 NC_006370.1 3783453 3783815 R hypothetical protein complement(3783453..3783815) Photobacterium profundum SS9 3124108 YP_131434.1 CDS PBPRA3334 NC_006370.1 3783812 3784834 R hypothetical protein complement(3783812..3784834) Photobacterium profundum SS9 3124571 YP_131435.1 CDS PBPRA3335 NC_006370.1 3785461 3785706 D transposase 3785461..3785706 Photobacterium profundum SS9 3124612 YP_131436.1 CDS rplI NC_006370.1 3785900 3786352 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(3785900..3786352) Photobacterium profundum SS9 3124632 YP_131437.1 CDS PBPRA3337 NC_006370.1 3786390 3786617 R ribosomal protein S18 complement(3786390..3786617) Photobacterium profundum SS9 3123301 YP_131438.1 CDS PBPRA3338 NC_006370.1 3786621 3786935 R binds single-stranded DNA at the primosome assembly site; primosomal replication protein N complement(3786621..3786935) Photobacterium profundum SS9 3122759 YP_131439.1 CDS rpsF NC_006370.1 3786944 3787387 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(3786944..3787387) Photobacterium profundum SS9 3122736 YP_131440.1 CDS PBPRA3340 NC_006370.1 3787617 3788354 R Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase complement(3787617..3788354) Photobacterium profundum SS9 3125059 YP_131441.1 CDS PBPRA3341 NC_006370.1 3788354 3790915 R exoribonuclease R complement(3788354..3790915) Photobacterium profundum SS9 3125023 YP_131442.2 CDS PBPRA3342 NC_006370.1 3791033 3791467 R negatively regulates the transcription of genes upregulated by nitrosative stress; transcriptional repressor NsrR complement(3791033..3791467) Photobacterium profundum SS9 3124936 YP_131443.1 CDS PBPRA3343 NC_006370.1 3791570 3792754 D flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 3791570..3792754 Photobacterium profundum SS9 3124922 YP_131444.1 CDS PBPRA3344 NC_006370.1 3792908 3793537 R sodium-type flagellar protein MotX complement(3792908..3793537) Photobacterium profundum SS9 3123545 YP_131445.1 CDS PBPRA3345 NC_006370.1 3793726 3795024 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(3793726..3795024) Photobacterium profundum SS9 3123089 YP_131446.1 CDS PBPRA3346 NC_006370.1 3795146 3795394 R hypothetical protein complement(3795146..3795394) Photobacterium profundum SS9 3122551 YP_131447.1 CDS PBPRA3347 NC_006370.1 3795434 3796432 R hflC protein complement(3795434..3796432) Photobacterium profundum SS9 3123667 YP_131448.1 CDS PBPRA3348 NC_006370.1 3796435 3797598 R membrane protease subunits complement(3796435..3797598) Photobacterium profundum SS9 3122839 YP_131449.1 CDS PBPRA3349 NC_006370.1 3797652 3798941 R involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein; GTPase HflX complement(3797652..3798941) Photobacterium profundum SS9 3122665 YP_131450.1 CDS hfq NC_006370.1 3798971 3799228 R Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq complement(3798971..3799228) Photobacterium profundum SS9 3125252 YP_131451.1 CDS miaA NC_006370.1 3799320 3800255 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(3799320..3800255) Photobacterium profundum SS9 3124514 YP_131452.1 CDS mutL NC_006370.1 3800248 3802401 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(3800248..3802401) Photobacterium profundum SS9 3124883 YP_131453.1 CDS PBPRA3353 NC_006370.1 3802404 3804131 R N-acetylmuramoyl-L-alanine amidase complement(3802404..3804131) Photobacterium profundum SS9 3125429 YP_131454.1 CDS PBPRA3354 NC_006370.1 3804128 3804592 R nucleotide-binding protein complement(3804128..3804592) Photobacterium profundum SS9 3123207 YP_131455.1 CDS PBPRA3355 NC_006370.1 3804601 3806091 R hypothetical protein complement(3804601..3806091) Photobacterium profundum SS9 3124932 YP_131456.1 CDS PBPRA3356 NC_006370.1 3806711 3807760 D iron-sulfur cluster-binding protein 3806711..3807760 Photobacterium profundum SS9 3122678 YP_131457.1 CDS PBPRA3370 NC_006370.1 3810333 3810878 R 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease complement(3810333..3810878) Photobacterium profundum SS9 3123042 YP_131458.2 CDS PBPRA3371 NC_006370.1 3810958 3812010 D EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 3810958..3812010 Photobacterium profundum SS9 3123265 YP_131459.1 CDS psd NC_006370.1 3812224 3813099 D catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 3812224..3813099 Photobacterium profundum SS9 3122584 YP_131460.1 CDS PBPRA3373 NC_006370.1 3813235 3814650 D transporter 3813235..3814650 Photobacterium profundum SS9 3124185 YP_131461.1 CDS PBPRA3374 NC_006370.1 3814662 3814919 D hypothetical protein 3814662..3814919 Photobacterium profundum SS9 3123494 YP_131462.1 CDS PBPRA3375 NC_006370.1 3814916 3816799 D methyl-accepting chemotaxis protein 3814916..3816799 Photobacterium profundum SS9 3124309 YP_131463.1 CDS PBPRA3376 NC_006370.1 3817100 3817825 D carbonic anhydrase 3817100..3817825 Photobacterium profundum SS9 3123523 YP_131464.1 CDS PBPRA3377 NC_006370.1 3818320 3819291 R lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase complement(3818320..3819291) Photobacterium profundum SS9 3123753 YP_131465.1 CDS PBPRA3378 NC_006370.1 3819842 3821653 D part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 3819842..3821653 Photobacterium profundum SS9 3123307 YP_131466.1 CDS PBPRA3379 NC_006370.1 3821653 3822393 D part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 3821653..3822393 Photobacterium profundum SS9 3122040 YP_131467.1 CDS PBPRA3380 NC_006370.1 3822396 3822779 D part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase subunit C 3822396..3822779 Photobacterium profundum SS9 3122241 YP_131468.1 CDS PBPRA3381 NC_006370.1 3822790 3823152 D in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D 3822790..3823152 Photobacterium profundum SS9 3122906 YP_131469.2 CDS PBPRA3382 NC_006370.1 3823399 3823965 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(3823399..3823965) Photobacterium profundum SS9 3122214 YP_131470.1 CDS PBPRA3383 NC_006370.1 3823949 3825022 D hypothetical protein 3823949..3825022 Photobacterium profundum SS9 3123774 YP_131471.1 CDS PBPRA3384 NC_006370.1 3825226 3826842 D methyl-accepting chemotaxis protein 3825226..3826842 Photobacterium profundum SS9 3125413 YP_131472.1 CDS alr NC_006370.1 3826887 3828101 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 3826887..3828101 Photobacterium profundum SS9 3125459 YP_131473.1 CDS PBPRA3386 NC_006370.1 3828687 3829592 D ribosomal protein S6 modification protein 3828687..3829592 Photobacterium profundum SS9 3122492 YP_131474.1 CDS groEL NC_006370.1 3830626 3832278 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL complement(3830626..3832278) Photobacterium profundum SS9 3122943 YP_131475.2 CDS groES NC_006370.1 3832320 3832610 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(3832320..3832610) Photobacterium profundum SS9 3122921 YP_131476.1 CDS PBPRA3389 NC_006370.1 3832797 3834206 D hypothetical protein 3832797..3834206 Photobacterium profundum SS9 3123153 YP_131477.1 CDS fxsA NC_006370.1 3834336 3834911 R F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA complement(3834336..3834911) Photobacterium profundum SS9 3123977 YP_131478.1 CDS aspA NC_006370.1 3835364 3836824 D catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 3835364..3836824 Photobacterium profundum SS9 3124576 YP_131479.1 CDS PBPRA3392 NC_006370.1 3836947 3838254 D functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter 3836947..3838254 Photobacterium profundum SS9 3124203 YP_131480.1 CDS PBPRA3393 NC_006370.1 3838756 3839673 D LysR family transcriptional regulator 3838756..3839673 Photobacterium profundum SS9 3124652 YP_131481.1 CDS PBPRA3395 NC_006370.1 3841770 3842576 D LuxR family transcriptional regulator 3841770..3842576 Photobacterium profundum SS9 3123887 YP_131482.1 CDS PBPRA3396 NC_006370.1 3842879 3843511 D multidrug ABC transporter 3842879..3843511 Photobacterium profundum SS9 3123529 YP_131483.1 CDS PBPRA3397 NC_006370.1 3843693 3843980 D hypothetical protein 3843693..3843980 Photobacterium profundum SS9 3122095 YP_131484.1 CDS PBPRA3398 NC_006370.1 3843991 3845694 D sodium/solute symporter 3843991..3845694 Photobacterium profundum SS9 3124752 YP_131485.1 CDS PBPRA3399 NC_006370.1 3845802 3849266 R Signal transduction histidinekinase complement(3845802..3849266) Photobacterium profundum SS9 3123512 YP_131486.1 CDS PBPRA3400 NC_006370.1 3849418 3850644 R transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; 3-phenylpropionic acid transporter complement(3849418..3850644) Photobacterium profundum SS9 3123310 YP_131487.1 CDS PBPRA3401 NC_006370.1 3850954 3852756 D hypothetical protein 3850954..3852756 Photobacterium profundum SS9 3125202 YP_131488.1 CDS PBPRA3402 NC_006370.1 3852759 3853382 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 3852759..3853382 Photobacterium profundum SS9 3125445 YP_131489.1 CDS PBPRA3403 NC_006370.1 3853584 3855533 D Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 3853584..3855533 Photobacterium profundum SS9 3125480 YP_131490.1 CDS PBPRA3404 NC_006370.1 3856338 3856790 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 3856338..3856790 Photobacterium profundum SS9 3125379 YP_131491.1 CDS PBPRA3405 NC_006370.1 3856818 3857276 D acetyl-CoA carboxylase, biotin carboxyl carrier protein 3856818..3857276 Photobacterium profundum SS9 3125212 YP_131492.1 CDS PBPRA3406 NC_006370.1 3857289 3858632 D an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 3857289..3858632 Photobacterium profundum SS9 3125297 YP_131493.1 CDS PBPRA3407 NC_006370.1 3858887 3859168 D hypothetical protein 3858887..3859168 Photobacterium profundum SS9 3125058 YP_131494.1 CDS panF NC_006370.1 3859161 3860615 D mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter 3859161..3860615 Photobacterium profundum SS9 3124957 YP_131495.2 CDS prmA NC_006370.1 3860788 3861672 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase 3860788..3861672 Photobacterium profundum SS9 3125045 YP_131496.1 CDS PBPRA3410 NC_006370.1 3861845 3862810 D dihydrouridine synthase 3861845..3862810 Photobacterium profundum SS9 3125147 YP_131497.1 CDS fis NC_006370.1 3862834 3863130 D Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; Fis family transcriptional regulator 3862834..3863130 Photobacterium profundum SS9 3125215 YP_131498.1 CDS PBPRA3412 NC_006370.1 3863576 3864592 D transposase 3863576..3864592 Photobacterium profundum SS9 3125242 YP_131499.1 CDS PBPRA3413 NC_006370.1 3864772 3865017 R hypothetical protein complement(3864772..3865017) Photobacterium profundum SS9 3124982 YP_131500.1 CDS PBPRA3414 NC_006370.1 3865248 3865796 R hypothetical protein complement(3865248..3865796) Photobacterium profundum SS9 3125359 YP_131501.1 CDS PBPRA3415 NC_006370.1 3866009 3866278 D hypothetical protein 3866009..3866278 Photobacterium profundum SS9 3125149 YP_131502.1 CDS PBPRA3416 NC_006370.1 3866339 3866635 R hypothetical protein complement(3866339..3866635) Photobacterium profundum SS9 3124976 YP_131503.1 CDS PBPRA3417 NC_006370.1 3866792 3866998 D hypothetical protein 3866792..3866998 Photobacterium profundum SS9 3124909 YP_131504.1 CDS zntR NC_006370.1 3867033 3867458 R mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator complement(3867033..3867458) Photobacterium profundum SS9 3125541 YP_131505.1 CDS purH NC_006370.1 3867684 3869318 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 3867684..3869318 Photobacterium profundum SS9 3122312 YP_131506.1 CDS PBPRA3420 NC_006370.1 3869441 3870730 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 3869441..3870730 Photobacterium profundum SS9 3122089 YP_131507.1 CDS PBPRA3421 NC_006370.1 3870868 3871578 R hypothetical protein complement(3870868..3871578) Photobacterium profundum SS9 3122285 YP_131508.1 CDS PBPRA3422 NC_006370.1 3871610 3871882 R DNA-binding protein HU-alpha complement(3871610..3871882) Photobacterium profundum SS9 3122348 YP_131509.1 CDS PBPRA3423 NC_006370.1 3872112 3873167 D hypothetical protein 3872112..3873167 Photobacterium profundum SS9 3122028 YP_131510.1 CDS PBPRA3424 NC_006370.1 3873269 3874588 R branched chain amino acid transporter complement(3873269..3874588) Photobacterium profundum SS9 3122661 YP_131511.1 CDS PBPRA3425 NC_006370.1 3875155 3875769 R hypothetical protein complement(3875155..3875769) Photobacterium profundum SS9 3122718 YP_131512.1 CDS PBPRA3426 NC_006370.1 3875811 3876722 D D-isomer specific 2-hydroxyacid dehydrogenase family protein 3875811..3876722 Photobacterium profundum SS9 3122738 YP_131513.1 CDS PBPRA3427 NC_006370.1 3876733 3877326 D hypothetical protein 3876733..3877326 Photobacterium profundum SS9 3122561 YP_131514.1 CDS hemE NC_006370.1 3877484 3878563 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(3877484..3878563) Photobacterium profundum SS9 3122765 YP_131515.1 CDS nudC NC_006370.1 3878756 3879556 R can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase complement(3878756..3879556) Photobacterium profundum SS9 3122407 YP_131516.1 CDS PBPRA3430 NC_006370.1 3879746 3880228 D binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 3879746..3880228 Photobacterium profundum SS9 3122786 YP_131517.1 CDS PBPRA3431 NC_006370.1 3880492 3884781 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(3880492..3884781) Photobacterium profundum SS9 3122732 YP_131518.1 CDS rpoB NC_006370.1 3884804 3888829 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(3884804..3888829) Photobacterium profundum SS9 3122565 YP_131519.2 CDS rplL NC_006370.1 3889056 3889421 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(3889056..3889421) Photobacterium profundum SS9 3122650 YP_131520.2 CDS rplJ NC_006370.1 3889482 3889976 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(3889482..3889976) Photobacterium profundum SS9 3122639 YP_131521.1 CDS rplA NC_006370.1 3890233 3890934 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(3890233..3890934) Photobacterium profundum SS9 3122947 YP_131522.1 CDS rplK NC_006370.1 3890939 3891367 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(3890939..3891367) Photobacterium profundum SS9 3122827 YP_131523.1 CDS nusG NC_006370.1 3891491 3892036 R Modulates Rho-dependent transcription termination; transcription antitermination protein NusG complement(3891491..3892036) Photobacterium profundum SS9 3122890 YP_131524.1 CDS secE NC_006370.1 3892048 3892425 R forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(3892048..3892425) Photobacterium profundum SS9 3124765 YP_131525.2 CDS tuf NC_006370.1 3892644 3893828 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(3892644..3893828) Photobacterium profundum SS9 3124810 YP_131526.1 CDS PBPRA3444 NC_006370.1 3894546 3895127 R hypothetical protein complement(3894546..3895127) Photobacterium profundum SS9 3124710 YP_131527.1 CDS PBPRA3445 NC_006370.1 3895127 3896089 R catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase complement(3895127..3896089) Photobacterium profundum SS9 3124697 YP_131528.1 CDS PBPRA3446 NC_006370.1 3896086 3897126 R UDP-N-acetylpyruvoylglucosamine reductase complement(3896086..3897126) Photobacterium profundum SS9 3124696 YP_131529.1 CDS PBPRA3447 NC_006370.1 3897202 3897627 D hypothetical protein 3897202..3897627 Photobacterium profundum SS9 3124771 YP_131530.1 CDS pssA NC_006370.1 3897756 3899105 D catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 3897756..3899105 Photobacterium profundum SS9 3124794 YP_131531.1 CDS PBPRA3449 NC_006370.1 3899113 3899742 D pyrazinamidase/nicotinamidase PncA 3899113..3899742 Photobacterium profundum SS9 3124709 YP_131532.1 CDS PBPRA3450 NC_006370.1 3899877 3901085 D transposase 3899877..3901085 Photobacterium profundum SS9 3122088 YP_131533.1 CDS PBPRA3451 NC_006370.1 3901683 3902825 R transposase complement(3901683..3902825) Photobacterium profundum SS9 3121982 YP_131534.1 CDS PBPRA3461 NC_006370.1 3915485 3915943 D RNA-binding protein 3915485..3915943 Photobacterium profundum SS9 3122297 YP_131535.1 CDS PBPRA3462 NC_006370.1 3915912 3916700 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(3915912..3916700) Photobacterium profundum SS9 3122126 YP_131536.1 CDS PBPRA3463 NC_006370.1 3916785 3917453 R hypothetical protein complement(3916785..3917453) Photobacterium profundum SS9 3122113 YP_131537.1 CDS PBPRA3464 NC_006370.1 3917501 3919321 R outer membrane cobalamin receptor protein complement(3917501..3919321) Photobacterium profundum SS9 3122282 YP_131538.1 CDS PBPRA3465 NC_006370.1 3919730 3920836 D catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 3919730..3920836 Photobacterium profundum SS9 3122203 YP_131539.1 CDS PBPRA3466 NC_006370.1 3920930 3921304 R hypothetical protein complement(3920930..3921304) Photobacterium profundum SS9 3122294 YP_131540.1 CDS PBPRA3467 NC_006370.1 3921328 3921960 R negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR complement(3921328..3921960) Photobacterium profundum SS9 3122150 YP_131541.1 CDS PBPRA3468 NC_006370.1 3922301 3923710 D catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 3922301..3923710 Photobacterium profundum SS9 3122142 YP_131542.1 CDS PBPRA3469 NC_006370.1 3923801 3924634 R CysQ protein complement(3923801..3924634) Photobacterium profundum SS9 3122159 YP_131543.1 CDS nudE NC_006370.1 3924644 3925195 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE complement(3924644..3925195) Photobacterium profundum SS9 3122195 YP_131544.1 CDS PBPRA3471 NC_006370.1 3925289 3926047 R general secretion pathway protein N complement(3925289..3926047) Photobacterium profundum SS9 3121960 YP_131545.1 CDS PBPRA3472 NC_006370.1 3926050 3926526 R general secretion pathway protein M complement(3926050..3926526) Photobacterium profundum SS9 3122258 YP_131546.1 CDS PBPRA3473 NC_006370.1 3926523 3927869 R general secretion pathway protein L complement(3926523..3927869) Photobacterium profundum SS9 3122154 YP_131547.1 CDS PBPRA3474 NC_006370.1 3927811 3928764 R hypotetical general secretion pathway protein K complement(3927811..3928764) Photobacterium profundum SS9 3122262 YP_131548.1 CDS PBPRA3475 NC_006370.1 3928851 3929519 R Type II secretory pathway, component EpsJ complement(3928851..3929519) Photobacterium profundum SS9 3122289 YP_131549.1 CDS PBPRA3476 NC_006370.1 3929509 3929829 R type II secretory pathway, pseudopilin EpsI complement(3929509..3929829) Photobacterium profundum SS9 3122065 YP_131550.1 CDS PBPRA3477 NC_006370.1 3929865 3930446 R general secretion pathway protein H complement(3929865..3930446) Photobacterium profundum SS9 3121991 YP_131551.1 CDS PBPRA3478 NC_006370.1 3930464 3930931 R type II secretory pathway, pseudopilin EpsG complement(3930464..3930931) Photobacterium profundum SS9 3122209 YP_131552.1 CDS PBPRA3479 NC_006370.1 3930921 3932153 R general secretion pathway protein F complement(3930921..3932153) Photobacterium profundum SS9 3122270 YP_131553.1 CDS PBPRA3480 NC_006370.1 3932153 3933637 R general secretion pathway protein E complement(3932153..3933637) Photobacterium profundum SS9 3121973 YP_131554.1 CDS PBPRA3481 NC_006370.1 3933652 3935664 R type II secretory pathway, component EpsD complement(3933652..3935664) Photobacterium profundum SS9 3122295 YP_131555.1 CDS PBPRA3482 NC_006370.1 3935707 3936603 R general secretion pathway protein C complement(3935707..3936603) Photobacterium profundum SS9 3122311 YP_131556.1 CDS PBPRA3483 NC_006370.1 3936862 3937272 D heat shock protein 15 3936862..3937272 Photobacterium profundum SS9 3122259 YP_131557.1 CDS hslO NC_006370.1 3937382 3938260 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; heat shock protein 33 3937382..3938260 Photobacterium profundum SS9 3122517 YP_131558.1 CDS PBPRA3485 NC_006370.1 3938620 3940212 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 3938620..3940212 Photobacterium profundum SS9 3122334 YP_131559.1 CDS PBPRA3486 NC_006370.1 3940409 3942388 D hypothetical protein 3940409..3942388 Photobacterium profundum SS9 3122728 YP_131560.1 CDS PBPRA3487 NC_006370.1 3942343 3943263 R hypothetical protein complement(3942343..3943263) Photobacterium profundum SS9 3122362 YP_131561.1 CDS PBPRA3488 NC_006370.1 3943345 3943782 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(3943345..3943782) Photobacterium profundum SS9 3122526 YP_131562.1 CDS rbn NC_006370.1 3943783 3944742 R RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN complement(3943783..3944742) Photobacterium profundum SS9 3122763 YP_131563.1 CDS PBPRA3490 NC_006370.1 3944805 3945419 R transcriptional regulator complement(3944805..3945419) Photobacterium profundum SS9 3122017 YP_131564.1 CDS PBPRA3491 NC_006370.1 3945496 3947340 R virulence regulator BipA complement(3945496..3947340) Photobacterium profundum SS9 3122474 YP_131565.1 CDS glnA NC_006370.1 3947899 3949308 D forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase 3947899..3949308 Photobacterium profundum SS9 3122796 YP_131566.1 CDS PBPRA3493 NC_006370.1 3949425 3950000 D hypothetical protein 3949425..3950000 Photobacterium profundum SS9 3122674 YP_131567.1 CDS glnL NC_006370.1 3950150 3951223 D sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation; nitrogen regulation protein NR(II) 3950150..3951223 Photobacterium profundum SS9 3122775 YP_131568.1 CDS PBPRA3495 NC_006370.1 3951298 3952713 D nitrogen regulation protein 3951298..3952713 Photobacterium profundum SS9 3122363 YP_131569.1 CDS PBPRA3496 NC_006370.1 3952926 3953978 D catalyzes the formation of inosine from adenosine; adenosine deaminase 3952926..3953978 Photobacterium profundum SS9 3122651 YP_131570.1 CDS PBPRA3497 NC_006370.1 3954089 3955462 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(3954089..3955462) Photobacterium profundum SS9 3122575 YP_131571.1 CDS PBPRA3498 NC_006370.1 3955623 3956102 R hypothetical protein complement(3955623..3956102) Photobacterium profundum SS9 3122513 YP_131572.1 CDS PBPRA3499 NC_006370.1 3956106 3956648 R hypothetical protein complement(3956106..3956648) Photobacterium profundum SS9 3122625 YP_131573.1 CDS PBPRA3500 NC_006370.1 3956850 3957113 R hypothetical protein complement(3956850..3957113) Photobacterium profundum SS9 3122456 YP_131574.1 CDS PBPRA3501 NC_006370.1 3958033 3958689 R cytochrome c4 complement(3958033..3958689) Photobacterium profundum SS9 3122580 YP_131575.1 CDS engB NC_006370.1 3958740 3959495 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 3958740..3959495 Photobacterium profundum SS9 3122861 YP_131576.1 CDS PBPRA3503 NC_006370.1 3960508 3963321 R has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I complement(3960508..3963321) Photobacterium profundum SS9 3122727 YP_131577.1 CDS PBPRA3504 NC_006370.1 3963663 3964313 D isoprenoid biosynthesis protein with amidotransferase-like domain 3963663..3964313 Photobacterium profundum SS9 3122662 YP_131578.1 CDS PBPRA3505 NC_006370.1 3964575 3965024 R hypothetical protein complement(3964575..3965024) Photobacterium profundum SS9 3122754 YP_131579.1 CDS PBPRA3506 NC_006370.1 3965101 3965808 R hypothetical protein complement(3965101..3965808) Photobacterium profundum SS9 3122685 YP_131580.1 CDS PBPRA3507 NC_006370.1 3966003 3966338 R hypothetical protein complement(3966003..3966338) Photobacterium profundum SS9 3122867 YP_131581.1 CDS PBPRA3508 NC_006370.1 3966664 3968511 R functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; ATP-dependent DNA helicase RecQ complement(3966664..3968511) Photobacterium profundum SS9 3122851 YP_131582.1 CDS PBPRA3509 NC_006370.1 3968793 3969704 D RarD 3968793..3969704 Photobacterium profundum SS9 3122773 YP_131583.1 CDS PBPRA3510 NC_006370.1 3969861 3970610 D AraC family transcriptional regulator 3969861..3970610 Photobacterium profundum SS9 3122798 YP_131584.1 CDS PBPRA3511 NC_006370.1 3970751 3971407 D threonine efflux protein 3970751..3971407 Photobacterium profundum SS9 3123041 YP_131585.1 CDS PBPRA3512 NC_006370.1 3971558 3973312 D gamma-glutamyltranspeptidase 3971558..3973312 Photobacterium profundum SS9 3123992 YP_131586.1 CDS uvrD NC_006370.1 3973445 3975619 R unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II complement(3973445..3975619) Photobacterium profundum SS9 3123005 YP_131587.1 CDS PBPRA3514 NC_006370.1 3975912 3976172 D signal peptide protein 3975912..3976172 Photobacterium profundum SS9 3123177 YP_131588.1 CDS PBPRA3515 NC_006370.1 3976239 3976496 D signal peptide protein 3976239..3976496 Photobacterium profundum SS9 3122956 YP_131589.1 CDS PBPRA3516 NC_006370.1 3976510 3977361 D hypothetical protein 3976510..3977361 Photobacterium profundum SS9 3123088 YP_131590.1 CDS PBPRA3517 NC_006370.1 3977423 3978115 D hypothetical protein 3977423..3978115 Photobacterium profundum SS9 3122885 YP_131591.1 CDS PBPRA3518 NC_006370.1 3978115 3978573 D transmembrane protein 3978115..3978573 Photobacterium profundum SS9 3122913 YP_131592.1 CDS PBPRA3519 NC_006370.1 3978830 3979549 R hypothetical protein complement(3978830..3979549) Photobacterium profundum SS9 3123352 YP_131593.1 CDS xerC NC_006370.1 3979664 3980605 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(3979664..3980605) Photobacterium profundum SS9 3122880 YP_131594.1 CDS PBPRA3521 NC_006370.1 3980575 3981276 R hypothetical protein complement(3980575..3981276) Photobacterium profundum SS9 3123422 YP_131595.1 CDS dapF NC_006370.1 3981273 3982103 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(3981273..3982103) Photobacterium profundum SS9 3123232 YP_131596.1 CDS PBPRA3523 NC_006370.1 3982140 3983390 R diaminopimelate decarboxylase complement(3982140..3983390) Photobacterium profundum SS9 3123362 YP_131597.1 CDS cyaY NC_006370.1 3983688 3984005 D defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 3983688..3984005 Photobacterium profundum SS9 3123286 YP_131598.1 CDS PBPRA3525 NC_006370.1 3984284 3985849 D hypothetical protein 3984284..3985849 Photobacterium profundum SS9 3123246 YP_131599.1 CDS cyaA NC_006370.1 3985864 3988437 R catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase complement(3985864..3988437) Photobacterium profundum SS9 3123190 YP_131600.1 CDS PBPRA3527 NC_006370.1 3988741 3989445 D porphobilinogen deaminase 3988741..3989445 Photobacterium profundum SS9 3123400 YP_131601.1 CDS PBPRA3528 NC_006370.1 3989453 3989767 D hypothetical protein 3989453..3989767 Photobacterium profundum SS9 3123128 YP_131602.1 CDS PBPRA3529 NC_006370.1 3989776 3990522 D uroporphyrinogen III synthase 3989776..3990522 Photobacterium profundum SS9 3122892 YP_131603.1 CDS PBPRA3530 NC_006370.1 3990527 3991828 D uroporphyrin-III C-methyltransferase 3990527..3991828 Photobacterium profundum SS9 3123332 YP_131604.1 CDS PBPRA3531 NC_006370.1 3991825 3993012 D protoheme IX synthesis protein HemY 3991825..3993012 Photobacterium profundum SS9 3123399 YP_131605.1 CDS PBPRA3532 NC_006370.1 3993379 3993885 R hypothetical protein complement(3993379..3993885) Photobacterium profundum SS9 3123346 YP_131606.1 CDS PBPRA3533 NC_006370.1 3993920 3994738 R hypothetical protein complement(3993920..3994738) Photobacterium profundum SS9 3123045 YP_131607.1 CDS PBPRA3534 NC_006370.1 3994796 3997954 R hipothetical sensory box/GGDEF family protein complement(3994796..3997954) Photobacterium profundum SS9 3123172 YP_131608.1 CDS PBPRA3535 NC_006370.1 3998112 3998573 D transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC 3998112..3998573 Photobacterium profundum SS9 3123133 YP_131609.1 CDS fre NC_006370.1 3998745 3999338 R NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase complement(3998745..3999338) Photobacterium profundum SS9 3123622 YP_131610.1 CDS PBPRA3537 NC_006370.1 3999482 3999637 R ferredoxin complement(3999482..3999637) Photobacterium profundum SS9 3123439 YP_131611.1 CDS PBPRA3538 NC_006370.1 3999779 4001674 R 3-polyprenyl-4-hydroxybenzoate decarboxylase complement(3999779..4001674) Photobacterium profundum SS9 3123427 YP_131612.1 CDS PBPRA3539 NC_006370.1 4001863 4002858 R hypothetical protein complement(4001863..4002858) Photobacterium profundum SS9 3123467 YP_131613.1 CDS rho NC_006370.1 4003147 4004514 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(4003147..4004514) Photobacterium profundum SS9 3123123 YP_131614.1 CDS PBPRA3541 NC_006370.1 4004606 4004944 R thioredoxin complement(4004606..4004944) Photobacterium profundum SS9 3123621 YP_131615.1 CDS PBPRA3542 NC_006370.1 4005045 4006358 D enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 4005045..4006358 Photobacterium profundum SS9 3123896 YP_131616.1 CDS PBPRA3543 NC_006370.1 4006371 4007864 D catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation; guanosine pentaphosphate phosphohydrolase 4006371..4007864 Photobacterium profundum SS9 3123968 YP_131617.1 CDS PBPRA3544 NC_006370.1 4008116 4010158 R oligopeptidase A complement(4008116..4010158) Photobacterium profundum SS9 3123587 YP_131618.1 CDS PBPRA3546 NC_006370.1 4011430 4012785 D catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 4011430..4012785 Photobacterium profundum SS9 3123563 YP_131619.1 CDS PBPRA3547 NC_006370.1 4013099 4014463 D hypothetical protein 4013099..4014463 Photobacterium profundum SS9 3123780 YP_131620.1 CDS PBPRA3548 NC_006370.1 4014632 4015378 R transposase complement(4014632..4015378) Photobacterium profundum SS9 3123675 YP_131621.1 CDS PBPRA3549 NC_006370.1 4015529 4015795 D hypothetical protein 4015529..4015795 Photobacterium profundum SS9 3123633 YP_131622.1 CDS PBPRA3550 NC_006370.1 4015831 4016508 D transposase 4015831..4016508 Photobacterium profundum SS9 3123656 YP_131623.1 CDS PBPRA3551 NC_006370.1 4016497 4017513 R transposase complement(4016497..4017513) Photobacterium profundum SS9 3123696 YP_131624.1 CDS PBPRA3552 NC_006370.1 4017744 4019354 D Y4jO 4017744..4019354 Photobacterium profundum SS9 3123630 YP_131625.1 CDS PBPRA3553 NC_006370.1 4019423 4019893 D transposase and inactivated derivative 4019423..4019893 Photobacterium profundum SS9 3123664 YP_131626.1 CDS PBPRA3554 NC_006370.1 4019895 4020458 D transposase and inactivated derivative 4019895..4020458 Photobacterium profundum SS9 3123814 YP_131627.1 CDS PBPRA3569 NC_006370.1 4038003 4038551 D carbonic anhydrase family 3 4038003..4038551 Photobacterium profundum SS9 3124529 YP_131628.1 CDS PBPRA3570 NC_006370.1 4038548 4038811 R hypothetical protein complement(4038548..4038811) Photobacterium profundum SS9 3124058 YP_131629.1 CDS aroE NC_006370.1 4038822 4039673 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(4038822..4039673) Photobacterium profundum SS9 3124516 YP_131630.1 CDS PBPRA3572 NC_006370.1 4039734 4040639 R catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase complement(4039734..4040639) Photobacterium profundum SS9 3124200 YP_131631.1 CDS PBPRA3573 NC_006370.1 4040665 4041243 R Sua5/YciO/YrdC family protein complement(4040665..4041243) Photobacterium profundum SS9 3124445 YP_131632.1 CDS PBPRA3574 NC_006370.1 4041303 4041908 R phosphoribosylaminoimidazole carboxylase, catalytic subunit complement(4041303..4041908) Photobacterium profundum SS9 3124498 YP_131633.1 CDS PBPRA3575 NC_006370.1 4041887 4042462 R DNA topoisomerase I-related protein complement(4041887..4042462) Photobacterium profundum SS9 3124245 YP_131634.1 CDS PBPRA3576 NC_006370.1 4042481 4042954 R hypothetical protein complement(4042481..4042954) Photobacterium profundum SS9 3124386 YP_131635.1 CDS PBPRA3577 NC_006370.1 4042957 4044054 R Smf protein complement(4042957..4044054) Photobacterium profundum SS9 3124448 YP_131636.1 CDS PBPRA3578 NC_006370.1 4044051 4045109 R hypothetical protein complement(4044051..4045109) Photobacterium profundum SS9 3124320 YP_131637.1 CDS def NC_006370.1 4045463 4045972 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 4045463..4045972 Photobacterium profundum SS9 3124360 YP_131638.1 CDS fmt NC_006370.1 4045989 4046933 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 4045989..4046933 Photobacterium profundum SS9 3124279 YP_131639.1 CDS PBPRA3581 NC_006370.1 4047004 4048299 D Sun protein 4047004..4048299 Photobacterium profundum SS9 3124399 YP_131640.1 CDS trkA NC_006370.1 4048411 4049787 D involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane component 4048411..4049787 Photobacterium profundum SS9 3124518 YP_131641.1 CDS PBPRA3583 NC_006370.1 4049791 4051236 D potassium uptake protein TrkH 4049791..4051236 Photobacterium profundum SS9 3124457 YP_131642.1 CDS PBPRA3584 NC_006370.1 4051376 4052035 R hemolysin complement(4051376..4052035) Photobacterium profundum SS9 3124354 YP_131643.1 CDS PBPRA3585 NC_006370.1 4052173 4052961 R SpoOM-related protein complement(4052173..4052961) Photobacterium profundum SS9 3124500 YP_131644.1 CDS PBPRA3586 NC_006370.1 4053107 4053778 R GntR family transcriptional regulator complement(4053107..4053778) Photobacterium profundum SS9 3124573 YP_131645.1 CDS PBPRA3587 NC_006370.1 4054482 4054760 D hypothetical protein 4054482..4054760 Photobacterium profundum SS9 3124608 YP_131646.1 CDS PBPRA3588 NC_006370.1 4055012 4056442 D FixG-related protein 4055012..4056442 Photobacterium profundum SS9 3124592 YP_131647.2 CDS PBPRA3589 NC_006370.1 4056544 4057530 D catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 4056544..4057530 Photobacterium profundum SS9 3124505 YP_131648.1 CDS PBPRA3590 NC_006370.1 4057615 4058217 D thiol:disulfide interchange protein 4057615..4058217 Photobacterium profundum SS9 3124606 YP_131649.1 CDS PBPRA3591 NC_006370.1 4058256 4058744 D hypothetical protein 4058256..4058744 Photobacterium profundum SS9 3124590 YP_131650.1 CDS PBPRA3592 NC_006370.1 4058766 4060298 R ComM-related protein complement(4058766..4060298) Photobacterium profundum SS9 3124591 YP_131651.1 CDS PBPRA3593 NC_006370.1 4060686 4062332 D catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 4060686..4062332 Photobacterium profundum SS9 3124586 YP_131652.1 CDS PBPRA3594 NC_006370.1 4062602 4063540 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 4062602..4063540 Photobacterium profundum SS9 3124600 YP_131653.2 CDS PBPRA3595 NC_006370.1 4063634 4065475 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 4063634..4065475 Photobacterium profundum SS9 3124665 YP_131654.1 CDS PBPRA3596 NC_006370.1 4065481 4067034 D threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 4065481..4067034 Photobacterium profundum SS9 3124721 YP_131655.1 CDS PBPRA3597 NC_006370.1 4067083 4067448 R transcriptional regulator complement(4067083..4067448) Photobacterium profundum SS9 3124636 YP_131656.1 CDS PBPRA3598 NC_006370.1 4067694 4068071 R transcriptional regulator complement(4067694..4068071) Photobacterium profundum SS9 3124745 YP_131657.1 CDS PBPRA3599 NC_006370.1 4068379 4070211 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(4068379..4070211) Photobacterium profundum SS9 3124705 YP_131658.1 CDS PBPRA3600 NC_006370.1 4070230 4071021 R DeoR family transcriptional regulator complement(4070230..4071021) Photobacterium profundum SS9 3124693 YP_131659.1 CDS glmU NC_006370.1 4071214 4072575 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(4071214..4072575) Photobacterium profundum SS9 3124725 YP_131660.1 CDS PBPRA3602 NC_006370.1 4073143 4073394 D hypothetical protein 4073143..4073394 Photobacterium profundum SS9 3124597 YP_131661.1 CDS atpC NC_006370.1 4073652 4074074 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; ATP synthase F0F1 subunit epsilon complement(4073652..4074074) Photobacterium profundum SS9 3124713 YP_131662.1 CDS PBPRA3604 NC_006370.1 4074092 4075498 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta complement(4074092..4075498) Photobacterium profundum SS9 3124618 YP_131663.1 CDS PBPRA3605 NC_006370.1 4075531 4076397 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma complement(4075531..4076397) Photobacterium profundum SS9 3122306 YP_131664.1 CDS PBPRA3606 NC_006370.1 4076442 4077983 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha complement(4076442..4077983) Photobacterium profundum SS9 3124674 YP_131665.1 CDS PBPRA3607 NC_006370.1 4078000 4078533 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta complement(4078000..4078533) Photobacterium profundum SS9 3124374 YP_131666.1 CDS PBPRA3608 NC_006370.1 4078550 4079020 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; ATP synthase F0F1 subunit B complement(4078550..4079020) Photobacterium profundum SS9 3124617 YP_131667.1 CDS PBPRA3609 NC_006370.1 4079097 4079357 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C complement(4079097..4079357) Photobacterium profundum SS9 3124224 YP_131668.1 CDS PBPRA3610 NC_006370.1 4079423 4080211 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A complement(4079423..4080211) Photobacterium profundum SS9 3124613 YP_131669.1 CDS PBPRA3611 NC_006370.1 4080220 4080609 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I complement(4080220..4080609) Photobacterium profundum SS9 3124325 YP_131670.1 CDS PBPRA3612 NC_006370.1 4080788 4081681 R ParB family protein complement(4080788..4081681) Photobacterium profundum SS9 3124584 YP_131671.1 CDS PBPRA3613 NC_006370.1 4081691 4082485 R ParA family protein complement(4081691..4082485) Photobacterium profundum SS9 3124647 YP_131672.1 CDS gidB NC_006370.1 4082502 4083122 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(4082502..4083122) Photobacterium profundum SS9 3124296 YP_131673.1 CDS PBPRA3615 NC_006370.1 4083132 4085021 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA complement(4083132..4085021) Photobacterium profundum SS9 3124534 YP_131674.1 CDS PBPRB0001 NC_006371.1 469 2475 D translation elongation factors 469..2475 Photobacterium profundum SS9 3121069 YP_131675.1 CDS PBPRB0002 NC_006371.1 2805 5087 D hypothetical protein 2805..5087 Photobacterium profundum SS9 3120004 YP_131676.1 CDS PBPRB0003 NC_006371.1 5583 8672 R tetrathionate reductase, subunit A complement(5583..8672) Photobacterium profundum SS9 3120479 YP_131677.1 CDS PBPRB0004 NC_006371.1 8684 9820 R tetrathionate reductase complex, subunit C complement(8684..9820) Photobacterium profundum SS9 3120151 YP_131678.1 CDS PBPRB0005 NC_006371.1 10026 10460 D transposase 10026..10460 Photobacterium profundum SS9 3119939 YP_131679.1 CDS PBPRB0006 NC_006371.1 10515 11183 R tetrathionate reductase, subunit B complement(10515..11183) Photobacterium profundum SS9 3121897 YP_131680.1 CDS PBPRB0007 NC_006371.1 11441 13357 D histidine kinase 11441..13357 Photobacterium profundum SS9 3121652 YP_131681.1 CDS PBPRB0008 NC_006371.1 13373 13966 D tetrathionate reductase complex response regulator 13373..13966 Photobacterium profundum SS9 3120144 YP_131682.1 CDS PBPRB0009 NC_006371.1 14133 14780 D maltose O-acetyltransferase 14133..14780 Photobacterium profundum SS9 3119954 YP_131683.1 CDS PBPRB0010 NC_006371.1 14899 15693 R AraC family transcriptional regulator complement(14899..15693) Photobacterium profundum SS9 3119959 YP_131684.1 CDS PBPRB0011 NC_006371.1 15915 16490 D hypothetical protein 15915..16490 Photobacterium profundum SS9 3120137 YP_131685.1 CDS PBPRB0012 NC_006371.1 17264 18151 D hypothetical protein 17264..18151 Photobacterium profundum SS9 3120548 YP_131686.1 CDS PBPRB0013 NC_006371.1 18413 19069 D transposase 18413..19069 Photobacterium profundum SS9 3121786 YP_131687.1 CDS PBPRB0014 NC_006371.1 19200 22037 D acyltransferase 19200..22037 Photobacterium profundum SS9 3120674 YP_131688.1 CDS PBPRB0015 NC_006371.1 22130 22852 D transposase 22130..22852 Photobacterium profundum SS9 3121360 YP_131689.1 CDS PBPRB0016 NC_006371.1 23171 23641 R transposase complement(23171..23641) Photobacterium profundum SS9 3120708 YP_131690.1 CDS PBPRB0017 NC_006371.1 24090 25724 R deacylase complement(24090..25724) Photobacterium profundum SS9 3120342 YP_131691.1 CDS PBPRB0018 NC_006371.1 26221 27603 R alpha-galactosidase (melibiase) complement(26221..27603) Photobacterium profundum SS9 3120205 YP_131692.1 CDS PBPRB0019 NC_006371.1 27606 28595 R AraH,ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components complement(27606..28595) Photobacterium profundum SS9 3121028 YP_131693.1 CDS PBPRB0020 NC_006371.1 28595 29350 R sugar ABC transporter ATPase protein complement(28595..29350) Photobacterium profundum SS9 3121012 YP_131694.1 CDS PBPRB0021 NC_006371.1 29350 30363 R hypothetical protein complement(29350..30363) Photobacterium profundum SS9 3120117 YP_131695.1 CDS PBPRB0022 NC_006371.1 30916 31182 D hypothetical protein 30916..31182 Photobacterium profundum SS9 3121539 YP_131696.1 CDS PBPRB0023 NC_006371.1 31218 32363 D transposase 31218..32363 Photobacterium profundum SS9 3119967 YP_131697.1 CDS PBPRB0024 NC_006371.1 32504 32755 D hypothetical protein 32504..32755 Photobacterium profundum SS9 3120200 YP_131698.1 CDS PBPRB0025 NC_006371.1 33436 34137 D response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR 33436..34137 Photobacterium profundum SS9 3120386 YP_131699.1 CDS PBPRB0026 NC_006371.1 34174 37281 D sensor protein TorS 34174..37281 Photobacterium profundum SS9 3121841 YP_131700.1 CDS PBPRB0027 NC_006371.1 37653 38234 D hypothetical protein 37653..38234 Photobacterium profundum SS9 3120277 YP_131701.1 CDS PBPRB0028 NC_006371.1 38421 40496 D methyl-accepting chemotaxisprotein 38421..40496 Photobacterium profundum SS9 3121661 YP_131702.1 CDS PBPRB0029 NC_006371.1 40752 41087 D hypothetical protein 40752..41087 Photobacterium profundum SS9 3120691 YP_131703.1 CDS PBPRB0030 NC_006371.1 41148 42116 D hypothetical protein 41148..42116 Photobacterium profundum SS9 3121692 YP_131704.1 CDS PBPRB0031 NC_006371.1 42164 43288 D associated with arginine deiminase pathway genes; probably functions in arginine catabolism; transaminase 42164..43288 Photobacterium profundum SS9 3120228 YP_131705.1 CDS PBPRB0032 NC_006371.1 43331 43996 R hypothetical protein complement(43331..43996) Photobacterium profundum SS9 3121830 YP_131706.1 CDS PBPRB0033 NC_006371.1 44301 45806 R hypothetical protein complement(44301..45806) Photobacterium profundum SS9 3120423 YP_131707.1 CDS lacZ NC_006371.1 46151 49243 R forms a homotetramer; hydrolyzes lactose disaccharide to galactose and glucose; converts lactose to allolactose which is the natural inducer of the lac operon; beta-D-galactosidase complement(46151..49243) Photobacterium profundum SS9 3120206 YP_131708.1 CDS PBPRB0035 NC_006371.1 49880 50128 D hypothetical protein 49880..50128 Photobacterium profundum SS9 3120175 YP_131709.1 CDS PBPRB0036 NC_006371.1 50257 50496 R cold shock-like protein complement(50257..50496) Photobacterium profundum SS9 3120123 YP_131710.1 CDS PBPRB0037 NC_006371.1 50503 50745 R hypothetical protein complement(50503..50745) Photobacterium profundum SS9 3120487 YP_131711.1 CDS PBPRB0038 NC_006371.1 50807 51694 D hypothetical protein 50807..51694 Photobacterium profundum SS9 3120811 YP_131712.1 CDS PBPRB0039 NC_006371.1 51741 52121 R hypothetical protein complement(51741..52121) Photobacterium profundum SS9 3120257 YP_131713.1 CDS PBPRB0040 NC_006371.1 52150 53313 R hypothetical protein complement(52150..53313) Photobacterium profundum SS9 3120234 YP_131714.1 CDS PBPRB0041 NC_006371.1 53598 53906 R hypothetical protein complement(53598..53906) Photobacterium profundum SS9 3121813 YP_131715.1 CDS PBPRB0042 NC_006371.1 54129 54737 R transcriptional regulator complement(54129..54737) Photobacterium profundum SS9 3121191 YP_131716.1 CDS PBPRB0043 NC_006371.1 54858 56009 D hypothetical protein 54858..56009 Photobacterium profundum SS9 3121882 YP_131717.1 CDS PBPRB0044 NC_006371.1 56111 56539 D hypothetical protein 56111..56539 Photobacterium profundum SS9 3121928 YP_131718.1 CDS PBPRB0045 NC_006371.1 56801 57742 R hypothetical protein complement(56801..57742) Photobacterium profundum SS9 3119957 YP_131719.1 CDS PBPRB0046 NC_006371.1 57895 59382 D catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 57895..59382 Photobacterium profundum SS9 3121687 YP_131720.1 CDS PBPRB0047 NC_006371.1 59382 60740 D hypothetical protein 59382..60740 Photobacterium profundum SS9 3121686 YP_131721.1 CDS PBPRB0048 NC_006371.1 60766 62070 D functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter 60766..62070 Photobacterium profundum SS9 3119958 YP_131722.1 CDS PBPRB0049 NC_006371.1 62274 63494 D hypothetical protein 62274..63494 Photobacterium profundum SS9 3120190 YP_131723.1 CDS PBPRB0050 NC_006371.1 63815 65158 D methylamine utilization protein 63815..65158 Photobacterium profundum SS9 3121182 YP_131724.1 CDS PBPRB0051 NC_006371.1 65219 65842 R hypothetical protein complement(65219..65842) Photobacterium profundum SS9 3120453 YP_131725.1 CDS PBPRB0052 NC_006371.1 65854 66270 R hypothetical protein complement(65854..66270) Photobacterium profundum SS9 3121791 YP_131726.1 CDS PBPRB0053 NC_006371.1 66302 66937 R hypothetical protein complement(66302..66937) Photobacterium profundum SS9 3120685 YP_131727.1 CDS PBPRB0054 NC_006371.1 66982 68007 R potassium channel related protein complement(66982..68007) Photobacterium profundum SS9 3121337 YP_131728.1 CDS PBPRB0055 NC_006371.1 68059 68745 R hypothetical protein complement(68059..68745) Photobacterium profundum SS9 3120611 YP_131729.1 CDS PBPRB0056 NC_006371.1 68745 69143 R hypothetical protein complement(68745..69143) Photobacterium profundum SS9 3120429 YP_131730.1 CDS PBPRB0057 NC_006371.1 69234 69482 R hypothetical protein complement(69234..69482) Photobacterium profundum SS9 3120703 YP_131731.1 CDS PBPRB0058 NC_006371.1 69616 71697 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(69616..71697) Photobacterium profundum SS9 3121712 YP_131732.1 CDS PBPRB0059 NC_006371.1 71705 72655 R Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase B complement(71705..72655) Photobacterium profundum SS9 3120437 YP_131733.1 CDS PBPRB0060 NC_006371.1 73110 76025 R BaeS, Signal transduction histidine kinase complement(73110..76025) Photobacterium profundum SS9 3121696 YP_131734.1 CDS PBPRB0061 NC_006371.1 76296 77786 R hypothetical protein complement(76296..77786) Photobacterium profundum SS9 3121793 YP_131735.1 CDS PBPRB0062 NC_006371.1 78188 78898 R catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase complement(78188..78898) Photobacterium profundum SS9 3121238 YP_131736.1 CDS PBPRB0063 NC_006371.1 80266 81636 R hypothetical protein complement(80266..81636) Photobacterium profundum SS9 3120070 YP_131737.1 CDS PBPRB0064 NC_006371.1 81829 82338 D hypothetical protein 81829..82338 Photobacterium profundum SS9 3121188 YP_131738.1 CDS PBPRB0065 NC_006371.1 82581 82994 R hypothetical protein complement(82581..82994) Photobacterium profundum SS9 3121247 YP_131739.1 CDS PBPRB0066 NC_006371.1 83354 84661 D hypothetical protein 83354..84661 Photobacterium profundum SS9 3121138 YP_131740.1 CDS PBPRB0067 NC_006371.1 84775 85431 R phosphatase/phosphohexomutase complement(84775..85431) Photobacterium profundum SS9 3121826 YP_131741.1 CDS PBPRB0068 NC_006371.1 85927 86622 D chloramphenicol acetyltransferase 85927..86622 Photobacterium profundum SS9 3120082 YP_131742.1 CDS PBPRB0069 NC_006371.1 86671 87879 R transposase complement(86671..87879) Photobacterium profundum SS9 3121868 YP_131743.1 CDS PBPRB0070 NC_006371.1 88149 90203 R penicillin-binding protein 2 complement(88149..90203) Photobacterium profundum SS9 3121175 YP_131744.1 CDS PBPRB0071 NC_006371.1 90507 91436 R hypothetical protein complement(90507..91436) Photobacterium profundum SS9 3121896 YP_131745.1 CDS PBPRB0072 NC_006371.1 91541 92434 D transcriptional regulator 91541..92434 Photobacterium profundum SS9 3121365 YP_131746.1 CDS PBPRB0073 NC_006371.1 92524 93474 D hypothetical protein 92524..93474 Photobacterium profundum SS9 3121808 YP_131747.1 CDS PBPRB0074 NC_006371.1 93922 95172 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 93922..95172 Photobacterium profundum SS9 3120656 YP_131748.1 CDS PBPRB0075 NC_006371.1 95429 96526 R hypothetical protein complement(95429..96526) Photobacterium profundum SS9 3121938 YP_131749.1 CDS PBPRB0076 NC_006371.1 97101 98405 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter complement(97101..98405) Photobacterium profundum SS9 3121382 YP_131750.1 CDS PBPRB0077 NC_006371.1 99275 100093 R transcriptional regulator complement(99275..100093) Photobacterium profundum SS9 3121020 YP_131751.1 CDS PBPRB0078 NC_006371.1 100104 100709 R efflux family protein complement(100104..100709) Photobacterium profundum SS9 3120274 YP_131752.1 CDS PBPRB0079 NC_006371.1 101163 103799 R biotin sulfoxide reductase (bisC) complement(101163..103799) Photobacterium profundum SS9 3121013 YP_131753.1 CDS PBPRB0080 NC_006371.1 104246 104713 R regulatory helix-turn-helix protein complement(104246..104713) Photobacterium profundum SS9 3120670 YP_131754.1 CDS PBPRB0081 NC_006371.1 104761 105009 D hypothetical protein 104761..105009 Photobacterium profundum SS9 3120091 YP_131755.1 CDS PBPRB0082 NC_006371.1 105107 106072 R hypothetical protein complement(105107..106072) Photobacterium profundum SS9 3121471 YP_131756.1 CDS PBPRB0083 NC_006371.1 107296 107625 R hypothetical protein complement(107296..107625) Photobacterium profundum SS9 3121641 YP_131757.1 CDS PBPRB0084 NC_006371.1 107635 108198 R transposase complement(107635..108198) Photobacterium profundum SS9 3120020 YP_131758.1 CDS PBPRB0085 NC_006371.1 108200 108670 R transposase complement(108200..108670) Photobacterium profundum SS9 3120328 YP_131759.1 CDS PBPRB0086 NC_006371.1 108916 109278 R hypothetical protein complement(108916..109278) Photobacterium profundum SS9 3120366 YP_131760.1 CDS PBPRB0087 NC_006371.1 109739 110044 D hypothetical protein 109739..110044 Photobacterium profundum SS9 3120619 YP_131761.1 CDS PBPRB0088 NC_006371.1 110124 110513 R universal stress protein A complement(110124..110513) Photobacterium profundum SS9 3120198 YP_131762.1 CDS PBPRB0089 NC_006371.1 111285 111947 R prophage MuSo1, Cro/CI family transcriptional regulator complement(111285..111947) Photobacterium profundum SS9 3119927 YP_131763.1 CDS PBPRB0090 NC_006371.1 113365 113700 D bacteriophage transcriptional regulator 113365..113700 Photobacterium profundum SS9 3120086 YP_131764.1 CDS PBPRB0091 NC_006371.1 113961 114473 D hypothetical protein 113961..114473 Photobacterium profundum SS9 3120075 YP_131765.1 CDS PBPRB0092 NC_006371.1 114535 114834 R hypothetical protein complement(114535..114834) Photobacterium profundum SS9 3119964 YP_131766.1 CDS PBPRB0093 NC_006371.1 115057 115482 R hypothetical protein complement(115057..115482) Photobacterium profundum SS9 3119953 YP_131767.1 CDS PBPRB0094 NC_006371.1 115844 117409 D hypothetical protein 115844..117409 Photobacterium profundum SS9 3120302 YP_131768.1 CDS PBPRB0095 NC_006371.1 117478 117744 D hypothetical protein 117478..117744 Photobacterium profundum SS9 3121875 YP_131769.1 CDS PBPRB0096 NC_006371.1 117817 118251 D transposase 117817..118251 Photobacterium profundum SS9 3120194 YP_131770.1 CDS PBPRB0097 NC_006371.1 118489 118797 D hypothetical protein 118489..118797 Photobacterium profundum SS9 3121357 YP_131771.1 CDS PBPRB0098 NC_006371.1 118937 119629 D hypothetical protein 118937..119629 Photobacterium profundum SS9 3121264 YP_131772.1 CDS PBPRB0099 NC_006371.1 120024 121232 D ISSod3 transposase 120024..121232 Photobacterium profundum SS9 3120071 YP_131773.1 CDS PBPRB0100 NC_006371.1 121597 123603 D methyl-accepting chemotaxis protein 121597..123603 Photobacterium profundum SS9 3121891 YP_131774.1 CDS PBPRB0101 NC_006371.1 123789 124532 R hypothetical protein complement(123789..124532) Photobacterium profundum SS9 3121289 YP_131775.1 CDS PBPRB0102 NC_006371.1 124719 125720 D hypothetical protein 124719..125720 Photobacterium profundum SS9 3121703 YP_131776.1 CDS PBPRB0103 NC_006371.1 126041 126778 D hypothetical protein 126041..126778 Photobacterium profundum SS9 3121401 YP_131777.1 CDS PBPRB0104 NC_006371.1 128100 129326 R FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(128100..129326) Photobacterium profundum SS9 3121162 YP_131778.1 CDS fabG NC_006371.1 129323 130048 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(129323..130048) Photobacterium profundum SS9 3121848 YP_131779.1 CDS PBPRB0106 NC_006371.1 130045 130536 R beta-hydroxydecanoyl-ACP dehydrase complement(130045..130536) Photobacterium profundum SS9 3121934 YP_131780.1 CDS PBPRB0107 NC_006371.1 130677 131792 R FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(130677..131792) Photobacterium profundum SS9 3120967 YP_131781.1 CDS PBPRB0108 NC_006371.1 131804 132430 R hypothetical protein complement(131804..132430) Photobacterium profundum SS9 3121922 YP_131782.1 CDS PBPRB0109 NC_006371.1 132427 134823 R hypothetical protein complement(132427..134823) Photobacterium profundum SS9 3119974 YP_131783.1 CDS PBPRB0110 NC_006371.1 134807 135493 R hypothetical protein complement(134807..135493) Photobacterium profundum SS9 3119956 YP_131784.1 CDS PBPRB0111 NC_006371.1 135477 135914 R hypothetical protein complement(135477..135914) Photobacterium profundum SS9 3120253 YP_131785.1 CDS PBPRB0112 NC_006371.1 135959 137515 R histidine ammonia-lyase protein complement(135959..137515) Photobacterium profundum SS9 3120531 YP_131786.1 CDS PBPRB0113 NC_006371.1 137493 139181 R hypothetical protein complement(137493..139181) Photobacterium profundum SS9 3121700 YP_131787.1 CDS PBPRB0114 NC_006371.1 139181 139531 R 3-hydroxylacyl-ACP dehydratase complement(139181..139531) Photobacterium profundum SS9 3120396 YP_131788.1 CDS PBPRB0115 NC_006371.1 139556 141010 R acyl-CoA synthetase complement(139556..141010) Photobacterium profundum SS9 3121433 YP_131789.1 CDS PBPRB0116 NC_006371.1 141017 141580 R hypothetical protein complement(141017..141580) Photobacterium profundum SS9 3120603 YP_131790.1 CDS PBPRB0117 NC_006371.1 141580 141837 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(141580..141837) Photobacterium profundum SS9 3120094 YP_131791.1 CDS PBPRB0118 NC_006371.1 141902 142159 R acyl carrier protein complement(141902..142159) Photobacterium profundum SS9 3120043 YP_131792.1 CDS PBPRB0119 NC_006371.1 142190 142981 R phospholipid biosynthesis acyltransferase complement(142190..142981) Photobacterium profundum SS9 3121803 YP_131793.1 CDS PBPRB0120 NC_006371.1 142986 143738 R hypothetical protein complement(142986..143738) Photobacterium profundum SS9 3120491 YP_131794.1 CDS PBPRB0121 NC_006371.1 143810 144286 D lipoprotein 143810..144286 Photobacterium profundum SS9 3120047 YP_131795.1 CDS PBPRB0122 NC_006371.1 144706 145818 D O-methyltransferase 144706..145818 Photobacterium profundum SS9 3121637 YP_131796.1 CDS PBPRB0123 NC_006371.1 145923 146798 R hypothetical protein complement(145923..146798) Photobacterium profundum SS9 3120715 YP_131797.1 CDS PBPRB0124 NC_006371.1 147154 148410 D oxidoreductase protein 147154..148410 Photobacterium profundum SS9 3120551 YP_131798.1 CDS PBPRB0125 NC_006371.1 148812 149468 D hypothetical protein 148812..149468 Photobacterium profundum SS9 3120397 YP_131799.1 CDS PBPRB0126 NC_006371.1 149548 149772 R hypothetical protein complement(149548..149772) Photobacterium profundum SS9 3120667 YP_131800.1 CDS PBPRB0127 NC_006371.1 149916 150812 D permease 149916..150812 Photobacterium profundum SS9 3120334 YP_131801.1 CDS PBPRB0128 NC_006371.1 150948 151772 R hypothetical protein complement(150948..151772) Photobacterium profundum SS9 3120324 YP_131802.1 CDS PBPRB0129 NC_006371.1 152308 152706 D hypothetical protein 152308..152706 Photobacterium profundum SS9 3121226 YP_131803.1 CDS PBPRB0130 NC_006371.1 152708 153475 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 152708..153475 Photobacterium profundum SS9 3121655 YP_131804.2 CDS PBPRB0131 NC_006371.1 153564 153800 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C 153564..153800 Photobacterium profundum SS9 3121656 YP_131805.1 CDS PBPRB0132 NC_006371.1 153885 154289 D ATP synthase subunit B 153885..154289 Photobacterium profundum SS9 3121415 YP_131806.1 CDS PBPRB0133 NC_006371.1 154369 154917 D ATP synthase F1 subunit delta 154369..154917 Photobacterium profundum SS9 3119951 YP_131807.1 CDS PBPRB0134 NC_006371.1 154930 156471 D produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 154930..156471 Photobacterium profundum SS9 3120449 YP_131808.1 CDS PBPRB0135 NC_006371.1 156546 157421 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma 156546..157421 Photobacterium profundum SS9 3120286 YP_131809.1 CDS PBPRB0136 NC_006371.1 157443 158828 D produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 157443..158828 Photobacterium profundum SS9 3120960 YP_131810.1 CDS atpC NC_006371.1 158844 159287 D part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; ATP synthase F0F1 subunit epsilon 158844..159287 Photobacterium profundum SS9 3120678 YP_131811.1 CDS PBPRB0138 NC_006371.1 159605 160333 R hypothetical protein complement(159605..160333) Photobacterium profundum SS9 3120718 YP_131812.1 CDS PBPRB0139 NC_006371.1 160373 161935 R sulfatase complement(160373..161935) Photobacterium profundum SS9 3120430 YP_131813.1 CDS PBPRB0140 NC_006371.1 162384 163160 D DeoR family transcriptional regulator 162384..163160 Photobacterium profundum SS9 3121406 YP_131814.1 CDS PBPRB0141 NC_006371.1 163209 164495 D tagatose 6-phosphate kinase 163209..164495 Photobacterium profundum SS9 3120910 YP_131815.1 CDS PBPRB0142 NC_006371.1 164506 165669 D phosphosugar isomerase 164506..165669 Photobacterium profundum SS9 3121864 YP_131816.1 CDS PBPRB0143 NC_006371.1 165695 166195 D PTS transport protein, component 2 165695..166195 Photobacterium profundum SS9 3120088 YP_131817.1 CDS PBPRB0144 NC_006371.1 166231 166995 D permease protein 166231..166995 Photobacterium profundum SS9 3121685 YP_131818.1 CDS PBPRB0145 NC_006371.1 166985 167878 D PTS permease protein 166985..167878 Photobacterium profundum SS9 3121678 YP_131819.1 CDS PBPRB0146 NC_006371.1 167938 168381 D PTS permease protein 167938..168381 Photobacterium profundum SS9 3120333 YP_131820.1 CDS PBPRB0147 NC_006371.1 168384 169535 D N-acetylglucosamine-6-phosphatedeacetylase 168384..169535 Photobacterium profundum SS9 3120002 YP_131821.1 CDS PBPRB0148 NC_006371.1 169557 170417 D 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; 5-keto-4-deoxyuronate isomerase 169557..170417 Photobacterium profundum SS9 3119944 YP_131822.1 CDS PBPRB0149 NC_006371.1 170447 171268 D catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; 2-deoxy-D-gluconate 3-dehydrogenase 170447..171268 Photobacterium profundum SS9 3119970 YP_131823.1 CDS PBPRB0150 NC_006371.1 171279 172328 D hypothetical protein 171279..172328 Photobacterium profundum SS9 3121680 YP_131824.1 CDS PBPRB0151 NC_006371.1 172430 173155 D hypothetical protein 172430..173155 Photobacterium profundum SS9 3121738 YP_131825.1 CDS PBPRB0152 NC_006371.1 173251 173769 D hypothetical protein 173251..173769 Photobacterium profundum SS9 3121728 YP_131826.1 CDS PBPRB0153 NC_006371.1 173871 176957 R chondroitinase complement(173871..176957) Photobacterium profundum SS9 3121859 YP_131827.1 CDS PBPRB0154 NC_006371.1 177286 178563 D arylsulfatase regulator 177286..178563 Photobacterium profundum SS9 3121522 YP_131828.1 CDS PBPRB0155 NC_006371.1 178589 180196 D sulfatase 178589..180196 Photobacterium profundum SS9 3120337 YP_131829.1 CDS PBPRB0156 NC_006371.1 180256 181749 D hypothetical protein 180256..181749 Photobacterium profundum SS9 3120392 YP_131830.2 CDS gatY NC_006371.1 181858 182712 D catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; tagatose-bisphosphate aldolase 181858..182712 Photobacterium profundum SS9 3121143 YP_131831.1 CDS PBPRB0158 NC_006371.1 182755 183828 D 2-dehydro-3-deoxygluconokinase 182755..183828 Photobacterium profundum SS9 3120758 YP_131832.1 CDS PBPRB0159 NC_006371.1 183821 184465 D catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 183821..184465 Photobacterium profundum SS9 3121553 YP_131833.1 CDS PBPRB0160 NC_006371.1 184476 185063 D ThiJ/PfpI family thiamine biogenesis protein 184476..185063 Photobacterium profundum SS9 3120127 YP_131834.1 CDS PBPRB0161 NC_006371.1 185226 185579 R hypothetical protein complement(185226..185579) Photobacterium profundum SS9 3121596 YP_131835.1 CDS PBPRB0162 NC_006371.1 185733 186242 R acetyltransferase complement(185733..186242) Photobacterium profundum SS9 3120590 YP_131836.1 CDS PBPRB0163 NC_006371.1 186657 187184 R hypothetical protein complement(186657..187184) Photobacterium profundum SS9 3121440 YP_131837.1 CDS PBPRB0164 NC_006371.1 187430 187924 D hypothetical protein 187430..187924 Photobacterium profundum SS9 3121390 YP_131838.1 CDS PBPRB0165 NC_006371.1 187997 188431 D transposase 187997..188431 Photobacterium profundum SS9 3121720 YP_131839.1 CDS PBPRB0166 NC_006371.1 188512 189183 D hypothetical protein 188512..189183 Photobacterium profundum SS9 3121491 YP_131840.1 CDS PBPRB0167 NC_006371.1 189364 189714 R hypothetical protein complement(189364..189714) Photobacterium profundum SS9 3120632 YP_131841.1 CDS PBPRB0168 NC_006371.1 189723 190274 R hypothetical protein complement(189723..190274) Photobacterium profundum SS9 3120113 YP_131842.1 CDS PBPRB0169 NC_006371.1 190367 191260 D hypothetical protein 190367..191260 Photobacterium profundum SS9 3120406 YP_131843.1 CDS PBPRB0170 NC_006371.1 191995 192297 R hypothetical protein complement(191995..192297) Photobacterium profundum SS9 3120579 YP_131844.1 CDS PBPRB0171 NC_006371.1 192369 192794 R universal stress protein A complement(192369..192794) Photobacterium profundum SS9 3121850 YP_131845.1 CDS PBPRB0172 NC_006371.1 193212 194126 R hypothetical protein complement(193212..194126) Photobacterium profundum SS9 3120000 YP_131846.1 CDS PBPRB0173 NC_006371.1 194494 195399 D acetyltransferase 194494..195399 Photobacterium profundum SS9 3120097 YP_131847.1 CDS PBPRB0174 NC_006371.1 195855 196100 R hypothetical protein complement(195855..196100) Photobacterium profundum SS9 3121854 YP_131848.1 CDS PBPRB0175 NC_006371.1 196365 197414 D periplasmic solute-bindingprotein 196365..197414 Photobacterium profundum SS9 3120750 YP_131849.1 CDS PBPRB0176 NC_006371.1 197424 198254 D hypothetical protein 197424..198254 Photobacterium profundum SS9 3120428 YP_131850.1 CDS PBPRB0177 NC_006371.1 198251 199174 D permease of ABC transporter 198251..199174 Photobacterium profundum SS9 3119941 YP_131851.1 CDS PBPRB0178 NC_006371.1 199161 199952 D permease of ABC transporter 199161..199952 Photobacterium profundum SS9 3121670 YP_131852.1 CDS PBPRB0179 NC_006371.1 199973 201022 D ATP-binding component of ABC transporter 199973..201022 Photobacterium profundum SS9 3121183 YP_131853.1 CDS PBPRB0180 NC_006371.1 201434 202429 R hypothetical protein complement(201434..202429) Photobacterium profundum SS9 3120968 YP_131854.1 CDS PBPRB0181 NC_006371.1 202460 203701 R hypothetical protein complement(202460..203701) Photobacterium profundum SS9 3121816 YP_131855.1 CDS PBPRB0182 NC_006371.1 203706 204119 R hypothetical protein complement(203706..204119) Photobacterium profundum SS9 3120177 YP_131856.1 CDS PBPRB0183 NC_006371.1 204463 205194 D hypothetical protein 204463..205194 Photobacterium profundum SS9 3120665 YP_131857.1 CDS PBPRB0184 NC_006371.1 205318 205629 D hypothetical protein 205318..205629 Photobacterium profundum SS9 3121299 YP_131858.1 CDS PBPRB0185 NC_006371.1 205648 206553 R transposase complement(205648..206553) Photobacterium profundum SS9 3120019 YP_131859.1 CDS PBPRB0186 NC_006371.1 206594 207187 R hypothetical protein complement(206594..207187) Photobacterium profundum SS9 3121684 YP_131860.1 CDS PBPRB0187 NC_006371.1 207297 207644 R transposase complement(207297..207644) Photobacterium profundum SS9 3120539 YP_131861.1 CDS PBPRB0188 NC_006371.1 209816 211471 R hypothetical protein complement(209816..211471) Photobacterium profundum SS9 3121208 YP_131862.1 CDS PBPRB0189 NC_006371.1 211455 212741 R transposase complement(211455..212741) Photobacterium profundum SS9 3120374 YP_131863.1 CDS PBPRB0190 NC_006371.1 213135 213479 D transposase 213135..213479 Photobacterium profundum SS9 3121600 YP_131864.1 CDS PBPRB0191 NC_006371.1 213602 214177 R hypothetical protein complement(213602..214177) Photobacterium profundum SS9 3121621 YP_131865.1 CDS PBPRB0192 NC_006371.1 214408 215430 R hypothetical protein complement(214408..215430) Photobacterium profundum SS9 3121496 YP_131866.1 CDS PBPRB0193 NC_006371.1 215433 215951 R hypothetical protein complement(215433..215951) Photobacterium profundum SS9 3121338 YP_131867.1 CDS PBPRB0194 NC_006371.1 216061 216408 R ISPpu15 transposase complement(216061..216408) Photobacterium profundum SS9 3121091 YP_131868.1 CDS PBPRB0195 NC_006371.1 216408 216704 R hypothetical protein complement(216408..216704) Photobacterium profundum SS9 3120353 YP_131869.1 CDS PBPRB0196 NC_006371.1 216881 217096 D hypothetical protein 216881..217096 Photobacterium profundum SS9 3120495 YP_131870.1 CDS PBPRB0197 NC_006371.1 217319 217630 R hypothetical protein complement(217319..217630) Photobacterium profundum SS9 3120914 YP_131871.1 CDS PBPRB0198 NC_006371.1 217732 218076 D hypothetical protein 217732..218076 Photobacterium profundum SS9 3121898 YP_131872.1 CDS PBPRB0199 NC_006371.1 218106 219473 R ATP-dependent RNA helicase complement(218106..219473) Photobacterium profundum SS9 3120248 YP_131873.1 CDS PBPRB0200 NC_006371.1 219755 221074 D oxidoreductase 219755..221074 Photobacterium profundum SS9 3120830 YP_131874.1 CDS PBPRB0201 NC_006371.1 221191 221706 R hypothetical protein complement(221191..221706) Photobacterium profundum SS9 3121110 YP_131875.1 CDS PBPRB0202 NC_006371.1 221890 222246 D hypothetical protein 221890..222246 Photobacterium profundum SS9 3120219 YP_131876.1 CDS PBPRB0203 NC_006371.1 222426 223271 D hypothetical protein 222426..223271 Photobacterium profundum SS9 3120954 YP_131877.1 CDS PBPRB0204 NC_006371.1 223951 225858 D methyl-accepting chemotaxis protein 223951..225858 Photobacterium profundum SS9 3119955 YP_131878.1 CDS PBPRB0205 NC_006371.1 226087 228081 D hypothetical protein 226087..228081 Photobacterium profundum SS9 3119952 YP_131879.1 CDS PBPRB0206 NC_006371.1 228198 229187 R hypothetical protein complement(228198..229187) Photobacterium profundum SS9 3119950 YP_131880.1 CDS PBPRB0207 NC_006371.1 229583 230851 D autoinducer synthase 229583..230851 Photobacterium profundum SS9 3119949 YP_131881.1 CDS PBPRB0208 NC_006371.1 230844 233726 D sensor protein LuxN 230844..233726 Photobacterium profundum SS9 3119948 YP_131882.1 CDS PBPRB0209 NC_006371.1 233930 235462 D Ada family regulatory protein 233930..235462 Photobacterium profundum SS9 3119947 YP_131883.1 CDS PBPRB0210 NC_006371.1 235455 235919 D methylated DNA-protein cysteinemethyltransferase 235455..235919 Photobacterium profundum SS9 3119946 YP_131884.1 CDS PBPRB0211 NC_006371.1 236615 237172 R MSHA pilin protein MshA complement(236615..237172) Photobacterium profundum SS9 3121927 YP_131885.1 CDS PBPRB0212 NC_006371.1 237697 239085 D exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 237697..239085 Photobacterium profundum SS9 3119968 YP_131886.1 CDS PBPRB0213 NC_006371.1 239331 239666 R hypothetical protein complement(239331..239666) Photobacterium profundum SS9 3119966 YP_131887.1 CDS PBPRB0214 NC_006371.1 239730 240065 R hypothetical protein complement(239730..240065) Photobacterium profundum SS9 3119969 YP_131888.1 CDS PBPRB0215 NC_006371.1 240236 240796 D hypothetical protein 240236..240796 Photobacterium profundum SS9 3119965 YP_131889.1 CDS PBPRB0216 NC_006371.1 241197 243152 D Positively regulates the dhaKLM operon from a sigma-70 promoter; DNA-binding transcriptional regulator DhaR 241197..243152 Photobacterium profundum SS9 3119921 YP_131890.1 CDS PBPRB0217 NC_006371.1 243220 245727 R phosphoenolpyruvate-protein phosphotransferase complement(243220..245727) Photobacterium profundum SS9 3121744 YP_131891.1 CDS PBPRB0218 NC_006371.1 245790 246416 R with DhaK and DhaM catalyzes the phosphorylation of dihydroxyacetone; dihydroxyacetone kinase subunit DhaL complement(245790..246416) Photobacterium profundum SS9 3119920 YP_131892.1 CDS PBPRB0219 NC_006371.1 246434 247501 R with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK complement(246434..247501) Photobacterium profundum SS9 3121616 YP_131893.1 CDS PBPRB0220 NC_006371.1 248031 249575 D methyl-accepting chemotaxis protein 248031..249575 Photobacterium profundum SS9 3121665 YP_131894.1 CDS PBPRB0221 NC_006371.1 249668 250648 R adh_zinc, Zinc-binding dehydrogenase complement(249668..250648) Photobacterium profundum SS9 3121627 YP_131895.1 CDS PBPRB0222 NC_006371.1 250787 251686 D transcriptional regulator 250787..251686 Photobacterium profundum SS9 3120063 YP_131896.1 CDS PBPRB0223 NC_006371.1 251855 252646 R hypothetical protein complement(251855..252646) Photobacterium profundum SS9 3121633 YP_131897.1 CDS PBPRB0224 NC_006371.1 252840 253724 R hypothetical protein complement(252840..253724) Photobacterium profundum SS9 3121626 YP_131898.1 CDS PBPRB0225 NC_006371.1 253964 255244 D hypothetical protein 253964..255244 Photobacterium profundum SS9 3121642 YP_131899.1 CDS PBPRB0226 NC_006371.1 255251 255550 D hypothetical protein 255251..255550 Photobacterium profundum SS9 3121647 YP_131900.1 CDS PBPRB0227 NC_006371.1 255806 257209 D ScrA 255806..257209 Photobacterium profundum SS9 3120116 YP_131901.1 CDS PBPRB0228 NC_006371.1 257264 258196 D ScrB 257264..258196 Photobacterium profundum SS9 3120115 YP_131902.1 CDS PBPRB0229 NC_006371.1 258199 260547 D hypothetical protein 258199..260547 Photobacterium profundum SS9 3120114 YP_131903.1 CDS PBPRB0230 NC_006371.1 261098 262435 D isomerase 261098..262435 Photobacterium profundum SS9 3120112 YP_131904.1 CDS PBPRB0231 NC_006371.1 262502 262768 D hypothetical protein 262502..262768 Photobacterium profundum SS9 3120111 YP_131905.1 CDS PBPRB0232 NC_006371.1 262804 263949 D transposase 262804..263949 Photobacterium profundum SS9 3120108 YP_131906.1 CDS PBPRB0233 NC_006371.1 264093 265412 D hypothetical protein 264093..265412 Photobacterium profundum SS9 3120107 YP_131907.1 CDS PBPRB0234 NC_006371.1 265727 266470 D GntR family transcriptional regulator 265727..266470 Photobacterium profundum SS9 3120106 YP_131908.1 CDS prpB NC_006371.1 266569 267438 D catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 266569..267438 Photobacterium profundum SS9 3120105 YP_131909.2 CDS PBPRB0236 NC_006371.1 267593 268753 D catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 267593..268753 Photobacterium profundum SS9 3120104 YP_131910.1 CDS prpD NC_006371.1 268797 270248 D functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 268797..270248 Photobacterium profundum SS9 3120103 YP_131911.1 CDS PBPRB0238 NC_006371.1 270300 272198 D Acyl-coenzyme A synthetase;AMP-(fatty) acid ligase 270300..272198 Photobacterium profundum SS9 3120102 YP_131912.1 CDS PBPRB0239 NC_006371.1 272355 272762 R hypothetical protein complement(272355..272762) Photobacterium profundum SS9 3121748 YP_131913.1 CDS PBPRB0240 NC_006371.1 273017 274324 D hypothetical protein 273017..274324 Photobacterium profundum SS9 3120101 YP_131914.1 CDS PBPRB0241 NC_006371.1 274405 274782 D translation initiation inhibitor 274405..274782 Photobacterium profundum SS9 3120095 YP_131915.1 CDS PBPRB0242 NC_006371.1 275295 276626 D transport system permease protein 275295..276626 Photobacterium profundum SS9 3120099 YP_131916.1 CDS PBPRB0243 NC_006371.1 276751 278025 R phospholipase complement(276751..278025) Photobacterium profundum SS9 3120098 YP_131917.1 CDS PBPRB0244 NC_006371.1 278125 279975 R hypothetical protein complement(278125..279975) Photobacterium profundum SS9 3120015 YP_131918.1 CDS PBPRB0245 NC_006371.1 280580 282190 D hypothetical protein 280580..282190 Photobacterium profundum SS9 3120395 YP_131919.1 CDS PBPRB0246 NC_006371.1 282267 282692 D diacylglycerol kinase 282267..282692 Photobacterium profundum SS9 3120096 YP_131920.1 CDS PBPRB0247 NC_006371.1 282766 283167 R GGDEF family protein complement(282766..283167) Photobacterium profundum SS9 3120092 YP_131921.1 CDS PBPRB0248 NC_006371.1 283167 283631 R hypothetical protein complement(283167..283631) Photobacterium profundum SS9 3121664 YP_131922.1 CDS PBPRB0249 NC_006371.1 283965 284339 D hypothetical protein 283965..284339 Photobacterium profundum SS9 3120090 YP_131923.1 CDS PBPRB0250 NC_006371.1 284653 285018 D hypothetical protein 284653..285018 Photobacterium profundum SS9 3121635 YP_131924.1 CDS PBPRB0251 NC_006371.1 285039 285581 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor SigZ 285039..285581 Photobacterium profundum SS9 3121679 YP_131925.1 CDS PBPRB0252 NC_006371.1 285652 286365 D hypothetical protein 285652..286365 Photobacterium profundum SS9 3121606 YP_131926.1 CDS PBPRB0253 NC_006371.1 286538 286915 R hypothetical protein complement(286538..286915) Photobacterium profundum SS9 3121663 YP_131927.1 CDS PBPRB0254 NC_006371.1 287658 288050 D hypothetical protein 287658..288050 Photobacterium profundum SS9 3121651 YP_131928.1 CDS PBPRB0255 NC_006371.1 288981 290834 R ABC-type multidrug transport system, ATPase and permease component complement(288981..290834) Photobacterium profundum SS9 3121648 YP_131929.1 CDS PBPRB0256 NC_006371.1 290982 291488 R melibiose operon regulatory protein complement(290982..291488) Photobacterium profundum SS9 3121650 YP_131930.1 CDS PBPRB0257 NC_006371.1 291571 291990 R melibiose operon regulatory protein complement(291571..291990) Photobacterium profundum SS9 3121649 YP_131931.1 CDS PBPRB0258 NC_006371.1 292315 293670 D alpha-galactosidase 292315..293670 Photobacterium profundum SS9 3121653 YP_131932.1 CDS PBPRB0259 NC_006371.1 293770 295197 D melibiose:sodium symporter 293770..295197 Photobacterium profundum SS9 3121667 YP_131933.1 CDS PBPRB0260 NC_006371.1 295314 297572 D hypothetical protein 295314..297572 Photobacterium profundum SS9 3121666 YP_131934.1 CDS PBPRB0261 NC_006371.1 297675 298991 R sensor histidine kinase complement(297675..298991) Photobacterium profundum SS9 3120084 YP_131935.1 CDS PBPRB0262 NC_006371.1 298972 299649 R DNA-binding response regulator complement(298972..299649) Photobacterium profundum SS9 3121888 YP_131936.1 CDS PBPRB0263 NC_006371.1 299761 301131 R phosphotransferase system IIC components, N-acetylglucosamine-specific IIABC component complement(299761..301131) Photobacterium profundum SS9 3121669 YP_131937.1 CDS PBPRB0264 NC_006371.1 301390 302610 R response regulator protein complement(301390..302610) Photobacterium profundum SS9 3121675 YP_131938.1 CDS PBPRB0265 NC_006371.1 303161 304003 R hypothetical protein complement(303161..304003) Photobacterium profundum SS9 3121674 YP_131939.1 CDS PBPRB0266 NC_006371.1 304131 307130 R hypothetical protein complement(304131..307130) Photobacterium profundum SS9 3121658 YP_131940.1 CDS murQ NC_006371.1 307420 308325 D catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid-6-phosphate etherase 307420..308325 Photobacterium profundum SS9 3121682 YP_131941.1 CDS PBPRB0268 NC_006371.1 308484 309239 R negative regulator of ulaG and ulaABCDEF; transcriptional repressor UlaR complement(308484..309239) Photobacterium profundum SS9 3121676 YP_131942.1 CDS PBPRB0269 NC_006371.1 309470 310342 R L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; L-xylulose 5-phosphate 3-epimerase complement(309470..310342) Photobacterium profundum SS9 3121662 YP_131943.1 CDS PBPRB0270 NC_006371.1 310368 311219 R hypothetical protein complement(310368..311219) Photobacterium profundum SS9 3120083 YP_131944.1 CDS PBPRB0271 NC_006371.1 311359 312426 R L-ascorbate 6-phosphate lactonase complement(311359..312426) Photobacterium profundum SS9 3120081 YP_131945.1 CDS PBPRB0272 NC_006371.1 312536 313291 R negative regulator of ulaG and ulaABCDEF; transcriptional repressor UlaR complement(312536..313291) Photobacterium profundum SS9 3120079 YP_131946.2 CDS ulaA NC_006371.1 313750 315498 D membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunits IICB 313750..315498 Photobacterium profundum SS9 3120078 YP_131947.1 CDS PBPRB0274 NC_006371.1 315512 316042 D phosphotransferase system mannitol/fructose-specific IIA component 315512..316042 Photobacterium profundum SS9 3120077 YP_131948.1 CDS araD NC_006371.1 316111 316803 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 316111..316803 Photobacterium profundum SS9 3120076 YP_131949.1 CDS ulaD NC_006371.1 317025 317669 D catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; 3-keto-L-gulonate-6-phosphate decarboxylase 317025..317669 Photobacterium profundum SS9 3120074 YP_131950.1 CDS PBPRB0277 NC_006371.1 318056 319525 R amino acid decarboxylase complement(318056..319525) Photobacterium profundum SS9 3120073 YP_131951.1 CDS PBPRB0278 NC_006371.1 319856 321142 D hypothetical protein 319856..321142 Photobacterium profundum SS9 3120072 YP_131952.1 CDS PBPRB0279 NC_006371.1 321266 322684 R arginine repressor complement(321266..322684) Photobacterium profundum SS9 3119923 YP_131953.1 CDS PBPRB0280 NC_006371.1 322678 323772 R hypothetical protein complement(322678..323772) Photobacterium profundum SS9 3120068 YP_131954.1 CDS PBPRB0281 NC_006371.1 323941 324867 R transcriptional regulator complement(323941..324867) Photobacterium profundum SS9 3120069 YP_131955.1 CDS PBPRB0282 NC_006371.1 325024 325743 R hypothetical protein complement(325024..325743) Photobacterium profundum SS9 3120067 YP_131956.1 CDS PBPRB0283 NC_006371.1 325865 326938 R hypothetical protein complement(325865..326938) Photobacterium profundum SS9 3120066 YP_131959.1 CDS PBPRB0286 NC_006371.1 327197 328642 R catalase complement(327197..328642) Photobacterium profundum SS9 3121755 YP_131960.1 CDS PBPRB0287 NC_006371.1 328948 329715 D transmembrane protein 328948..329715 Photobacterium profundum SS9 3120062 YP_131961.1 CDS PBPRB0288 NC_006371.1 329836 330441 D IS1328 transposase 329836..330441 Photobacterium profundum SS9 3120061 YP_131962.1 CDS PBPRB0289 NC_006371.1 330967 331986 D transposase 330967..331986 Photobacterium profundum SS9 3120060 YP_131963.1 CDS PBPRB0290 NC_006371.1 332086 332346 D transposase 332086..332346 Photobacterium profundum SS9 3120059 YP_131964.1 CDS PBPRB0291 NC_006371.1 332633 332998 D hypothetical protein 332633..332998 Photobacterium profundum SS9 3120058 YP_131965.1 CDS PBPRB0292 NC_006371.1 332995 333270 D hypothetical protein 332995..333270 Photobacterium profundum SS9 3120057 YP_131966.1 CDS PBPRB0293 NC_006371.1 333366 333662 D hypothetical protein 333366..333662 Photobacterium profundum SS9 3121725 YP_131967.1 CDS PBPRB0294 NC_006371.1 333662 334009 D ISPpu15 transposase 333662..334009 Photobacterium profundum SS9 3120055 YP_131968.1 CDS PBPRB0295 NC_006371.1 334130 335662 D transposase 334130..335662 Photobacterium profundum SS9 3120053 YP_131969.1 CDS PBPRB0296 NC_006371.1 336127 336423 D hypothetical protein 336127..336423 Photobacterium profundum SS9 3120054 YP_131970.1 CDS PBPRB0297 NC_006371.1 336676 338064 R transposase complement(336676..338064) Photobacterium profundum SS9 3120052 YP_131971.1 CDS PBPRB0298 NC_006371.1 338113 338424 D hypothetical protein 338113..338424 Photobacterium profundum SS9 3120050 YP_131972.1 CDS PBPRB0299 NC_006371.1 338530 339048 D hypothetical protein 338530..339048 Photobacterium profundum SS9 3120051 YP_131973.1 CDS PBPRB0300 NC_006371.1 339096 339554 R transposase complement(339096..339554) Photobacterium profundum SS9 3120049 YP_131974.1 CDS PBPRB0301 NC_006371.1 339551 340153 R hypothetical protein complement(339551..340153) Photobacterium profundum SS9 3120048 YP_131975.1 CDS PBPRB0302 NC_006371.1 340270 342105 D hypothetical protein 340270..342105 Photobacterium profundum SS9 3120046 YP_131976.1 CDS PBPRB0303 NC_006371.1 342191 343639 R hypothetical protein complement(342191..343639) Photobacterium profundum SS9 3120045 YP_131977.1 CDS PBPRB0304 NC_006371.1 343636 344661 R endoglucanase complement(343636..344661) Photobacterium profundum SS9 3120041 YP_131978.1 CDS PBPRB0305 NC_006371.1 344658 346736 R hypothetical protein complement(344658..346736) Photobacterium profundum SS9 3120040 YP_131979.1 CDS PBPRB0306 NC_006371.1 346733 348964 R glycosyltransferase complement(346733..348964) Photobacterium profundum SS9 3120039 YP_131980.1 CDS PBPRB0307 NC_006371.1 348966 349493 R hypothetical protein complement(348966..349493) Photobacterium profundum SS9 3120038 YP_131981.1 CDS PBPRB0308 NC_006371.1 349835 350779 R hypothetical protein complement(349835..350779) Photobacterium profundum SS9 3120037 YP_131982.1 CDS PBPRB0309 NC_006371.1 350958 352478 R aldehyde dehydrogenase complement(350958..352478) Photobacterium profundum SS9 3120035 YP_131983.1 CDS PBPRB0310 NC_006371.1 352729 354540 D Fis family transcriptional regulator 352729..354540 Photobacterium profundum SS9 3120036 YP_131984.1 CDS PBPRB0311 NC_006371.1 354775 355116 R hypothetical protein complement(354775..355116) Photobacterium profundum SS9 3120034 YP_131985.1 CDS PBPRB0312 NC_006371.1 355697 357163 D GbpA; plays a role mediating bacterial attachment and colonization of zooplankton and/or intestinal epithelium; in Vibrio cholerae this protein probably binds directly N-acetylglucosamine residues in chitin, glycoproteins and lipids on intestinal epithelial cells; N-acetylglucosamine-binding protein A 355697..357163 Photobacterium profundum SS9 3120033 YP_131986.1 CDS PBPRB0313 NC_006371.1 357254 357790 D hypothetical protein 357254..357790 Photobacterium profundum SS9 3120032 YP_131987.1 CDS PBPRB0314 NC_006371.1 358040 358240 D multidrug efflux transporter 358040..358240 Photobacterium profundum SS9 3120031 YP_131988.1 CDS PBPRB0315 NC_006371.1 358262 358507 D hypothetical protein 358262..358507 Photobacterium profundum SS9 3120030 YP_131989.1 CDS PBPRB0316 NC_006371.1 358526 358894 R hypothetical protein complement(358526..358894) Photobacterium profundum SS9 3120029 YP_131990.1 CDS PBPRB0317 NC_006371.1 359007 360572 R hypothetical protein complement(359007..360572) Photobacterium profundum SS9 3120028 YP_131991.1 CDS PBPRB0318 NC_006371.1 360963 361628 D phospholipase/carboxylesterase family protein 360963..361628 Photobacterium profundum SS9 3120027 YP_131992.1 CDS PBPRB0319 NC_006371.1 361683 363053 R L-serine dehydratase 1 complement(361683..363053) Photobacterium profundum SS9 3120026 YP_131993.1 CDS PBPRB0320 NC_006371.1 363479 363688 D hypothetical protein 363479..363688 Photobacterium profundum SS9 3120025 YP_131994.1 CDS PBPRB0321 NC_006371.1 363809 366778 R hypothetical protein complement(363809..366778) Photobacterium profundum SS9 3120024 YP_131995.1 CDS PBPRB0322 NC_006371.1 367104 368477 R hypothetical protein complement(367104..368477) Photobacterium profundum SS9 3120023 YP_131996.1 CDS PBPRB0323 NC_006371.1 368636 369250 D amino acid transporter LysE 368636..369250 Photobacterium profundum SS9 3120021 YP_131997.1 CDS PBPRB0324 NC_006371.1 369405 370763 D functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter 369405..370763 Photobacterium profundum SS9 3121764 YP_131998.1 CDS PBPRB0325 NC_006371.1 372421 373785 R Trk family potassium uptake protein complement(372421..373785) Photobacterium profundum SS9 3121766 YP_131999.1 CDS PBPRB0326 NC_006371.1 373787 374440 R potassium uptake protein complement(373787..374440) Photobacterium profundum SS9 3121762 YP_132000.1 CDS PBPRB0327 NC_006371.1 374523 375230 R transcriptional regulatory protein KdpE complement(374523..375230) Photobacterium profundum SS9 3121694 YP_132001.1 CDS PBPRB0328 NC_006371.1 375205 376248 R sensor histidine kinase complement(375205..376248) Photobacterium profundum SS9 3121704 YP_132002.1 CDS PBPRB0329 NC_006371.1 376786 377688 R anaerobic dimethyl sulfoxide reductase subunit C complement(376786..377688) Photobacterium profundum SS9 3121807 YP_132003.1 CDS PBPRB0330 NC_006371.1 378258 380702 R anaerobic dimethyl sulfoxide reductase, subunit A complement(378258..380702) Photobacterium profundum SS9 3121809 YP_132004.1 CDS PBPRB0331 NC_006371.1 381066 381650 D hypothetical protein 381066..381650 Photobacterium profundum SS9 3120089 YP_132005.1 CDS PBPRB0332 NC_006371.1 381650 382207 D ferredoxin-type protein NapF 381650..382207 Photobacterium profundum SS9 3121702 YP_132006.1 CDS PBPRB0333 NC_006371.1 382546 382923 D hypothetical protein 382546..382923 Photobacterium profundum SS9 3120118 YP_132007.1 CDS PBPRB0334 NC_006371.1 383101 383841 D hypothetical protein 383101..383841 Photobacterium profundum SS9 3120087 YP_132008.1 CDS PBPRB0335 NC_006371.1 383989 384864 D hypothetical protein 383989..384864 Photobacterium profundum SS9 3119926 YP_132009.1 CDS PBPRB0336 NC_006371.1 385003 385905 D hypothetical protein 385003..385905 Photobacterium profundum SS9 3119928 YP_132010.1 CDS PBPRB0337 NC_006371.1 386036 386692 D 2-hydroxychromene-2-carboxylate isomerase 386036..386692 Photobacterium profundum SS9 3119929 YP_132011.1 CDS PBPRB0338 NC_006371.1 386980 387723 D hypothetical protein 386980..387723 Photobacterium profundum SS9 3119924 YP_132012.1 CDS PBPRB0339 NC_006371.1 387793 388527 D hypothetical protein 387793..388527 Photobacterium profundum SS9 3119930 YP_132013.1 CDS PBPRB0340 NC_006371.1 388552 388857 D hypothetical protein 388552..388857 Photobacterium profundum SS9 3119931 YP_132014.1 CDS PBPRB0341 NC_006371.1 388963 389427 R hypothetical protein complement(388963..389427) Photobacterium profundum SS9 3119932 YP_132015.1 CDS PBPRB0342 NC_006371.1 389531 389956 R hypothetical protein complement(389531..389956) Photobacterium profundum SS9 3119934 YP_132016.1 CDS PBPRB0343 NC_006371.1 390502 392067 D hypothetical protein 390502..392067 Photobacterium profundum SS9 3119933 YP_132017.1 CDS PBPRB0344 NC_006371.1 392928 393272 D hypothetical protein 392928..393272 Photobacterium profundum SS9 3119935 YP_132018.1 CDS PBPRB0345 NC_006371.1 393320 393589 R hypothetical protein complement(393320..393589) Photobacterium profundum SS9 3119937 YP_132019.1 CDS PBPRB0346 NC_006371.1 393688 394833 R transposase complement(393688..394833) Photobacterium profundum SS9 3119936 YP_132020.1 CDS PBPRB0347 NC_006371.1 394869 395135 R hypothetical protein complement(394869..395135) Photobacterium profundum SS9 3119938 YP_132021.1 CDS PBPRB0348 NC_006371.1 395202 395546 R hypothetical protein complement(395202..395546) Photobacterium profundum SS9 3121884 YP_132022.1 CDS PBPRB0349 NC_006371.1 395888 396193 R hypothetical protein complement(395888..396193) Photobacterium profundum SS9 3121885 YP_132023.1 CDS fabG NC_006371.1 396632 397375 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 396632..397375 Photobacterium profundum SS9 3119963 YP_132024.1 CDS PBPRB0351 NC_006371.1 397604 397951 D hypothetical protein 397604..397951 Photobacterium profundum SS9 3121860 YP_132025.1 CDS PBPRB0352 NC_006371.1 398017 399834 D polyhydroxyalkanoic acid synthase 398017..399834 Photobacterium profundum SS9 3120100 YP_132026.1 CDS PBPRB0353 NC_006371.1 400022 400270 R hypothetical protein complement(400022..400270) Photobacterium profundum SS9 3120085 YP_132027.1 CDS PBPRB0354 NC_006371.1 400313 400633 R hypothetical protein complement(400313..400633) Photobacterium profundum SS9 3121677 YP_132028.1 CDS PBPRB0355 NC_006371.1 400780 401238 R hypothetical protein complement(400780..401238) Photobacterium profundum SS9 3121735 YP_132029.1 CDS PBPRB0356 NC_006371.1 401623 402384 D hypothetical protein 401623..402384 Photobacterium profundum SS9 3121681 YP_132030.1 CDS PBPRB0357 NC_006371.1 402423 403037 D hypothetical protein 402423..403037 Photobacterium profundum SS9 3121672 YP_132031.1 CDS PBPRB0358 NC_006371.1 403107 403667 D hypothetical protein 403107..403667 Photobacterium profundum SS9 3121673 YP_132032.1 CDS PBPRB0359 NC_006371.1 404646 405008 D alkaline phosphatase 404646..405008 Photobacterium profundum SS9 3121734 YP_132033.1 CDS nagB NC_006371.1 405081 405881 R catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase complement(405081..405881) Photobacterium profundum SS9 3121683 YP_132034.1 CDS mtlR NC_006371.1 406131 406661 R Acts as a repressor of the mtlAD operon; mannitol repressor protein complement(406131..406661) Photobacterium profundum SS9 3120016 YP_132035.1 CDS PBPRB0362 NC_006371.1 406767 407912 R mannitol-1-phosphate 5-dehydrogenase complement(406767..407912) Photobacterium profundum SS9 3120018 YP_132036.1 CDS PBPRB0363 NC_006371.1 408017 409969 R mannitol-specific IIABC component, PTS system complement(408017..409969) Photobacterium profundum SS9 3120014 YP_132037.1 CDS PBPRB0364 NC_006371.1 410652 413024 D ATP-dependent protease LA-relatedprotein 410652..413024 Photobacterium profundum SS9 3120013 YP_132038.1 CDS PBPRB0365 NC_006371.1 413233 414909 D methyl-accepting chemotaxis protein 413233..414909 Photobacterium profundum SS9 3120011 YP_132039.1 CDS PBPRB0366 NC_006371.1 414998 415885 R hypothetical protein complement(414998..415885) Photobacterium profundum SS9 3120012 YP_132040.1 CDS PBPRB0367 NC_006371.1 416175 417803 R methyl-accepting chemotaxis protein complement(416175..417803) Photobacterium profundum SS9 3120009 YP_132041.1 CDS PBPRB0368 NC_006371.1 418069 418776 R ABC transporter, ATP-binding protein complement(418069..418776) Photobacterium profundum SS9 3120010 YP_132042.1 CDS PBPRB0369 NC_006371.1 418783 420063 R hypothetical protein complement(418783..420063) Photobacterium profundum SS9 3120007 YP_132043.1 CDS PBPRB0370 NC_006371.1 420065 421282 R hypothetical protein complement(420065..421282) Photobacterium profundum SS9 3120008 YP_132044.1 CDS PBPRB0371 NC_006371.1 421279 422577 R outer membrane protein TolC complement(421279..422577) Photobacterium profundum SS9 3120005 YP_132045.1 CDS PBPRB0372 NC_006371.1 422570 423709 R hypothetical protein complement(422570..423709) Photobacterium profundum SS9 3120006 YP_132046.2 CDS fbpC NC_006371.1 423947 425002 R Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import; ferric transporter ATP-binding subunit complement(423947..425002) Photobacterium profundum SS9 3121894 YP_132047.1 CDS PBPRB0374 NC_006371.1 425021 427117 R ABC transporter, permease complement(425021..427117) Photobacterium profundum SS9 3119981 YP_132048.1 CDS PBPRB0375 NC_006371.1 427419 428453 R iron(III) ABC transporter, periplasmic iron-compound-binding protein complement(427419..428453) Photobacterium profundum SS9 3119978 YP_132049.1 CDS PBPRB0376 NC_006371.1 428622 429947 R membrane protein regulates uhpT expression; regulatory protein UhpC complement(428622..429947) Photobacterium profundum SS9 3119979 YP_132050.1 CDS PBPRB0377 NC_006371.1 430047 431660 R hypoyhetical signal transduction histidine kinase complement(430047..431660) Photobacterium profundum SS9 3119977 YP_132051.1 CDS PBPRB0378 NC_006371.1 431664 432293 R transcriptional regulator UhpA complement(431664..432293) Photobacterium profundum SS9 3119976 YP_132052.1 CDS PBPRB0379 NC_006371.1 432499 433716 R ammonium permease complement(432499..433716) Photobacterium profundum SS9 3120044 YP_132053.1 CDS PBPRB0380 NC_006371.1 433778 434152 R hypothetical protein complement(433778..434152) Photobacterium profundum SS9 3120748 YP_132054.1 CDS PBPRB0381 NC_006371.1 434803 436716 D methyl-accepting chemotaxis protein 434803..436716 Photobacterium profundum SS9 3119975 YP_132055.1 CDS tnaA NC_006371.1 436848 438248 R tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; tryptophanase complement(436848..438248) Photobacterium profundum SS9 3121710 YP_132056.1 CDS PBPRB0383 NC_006371.1 439023 439346 R hypothetical protein complement(439023..439346) Photobacterium profundum SS9 3121731 YP_132057.1 CDS PBPRB0384 NC_006371.1 439893 440216 D hypothetical protein 439893..440216 Photobacterium profundum SS9 3121736 YP_132058.1 CDS PBPRB0385 NC_006371.1 440356 441504 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase complement(440356..441504) Photobacterium profundum SS9 3121732 YP_132059.1 CDS PBPRB0386 NC_006371.1 441662 442768 D cytochrome c oxidase subunit II 441662..442768 Photobacterium profundum SS9 3121814 YP_132060.1 CDS PBPRB0387 NC_006371.1 442806 444608 D cytochrome C oxidase 442806..444608 Photobacterium profundum SS9 3121869 YP_132061.1 CDS PBPRB0388 NC_006371.1 444601 445227 D cytochrome c oxidase subunit III 444601..445227 Photobacterium profundum SS9 3121843 YP_132062.1 CDS PBPRB0389 NC_006371.1 445242 445991 D cytochrome c oxidase subunit III 445242..445991 Photobacterium profundum SS9 3119942 YP_132063.1 CDS PBPRB0390 NC_006371.1 446002 446325 D small integral membrane protein 446002..446325 Photobacterium profundum SS9 3121833 YP_132064.1 CDS PBPRB0391 NC_006371.1 446404 446958 R hypothetical protein complement(446404..446958) Photobacterium profundum SS9 3119940 YP_132065.1 CDS PBPRB0392 NC_006371.1 447769 448413 D hypothetical protein 447769..448413 Photobacterium profundum SS9 3119945 YP_132066.1 CDS PBPRB0393 NC_006371.1 448410 448979 R hypothetical protein complement(448410..448979) Photobacterium profundum SS9 3119943 YP_132067.1 CDS PBPRB0394 NC_006371.1 449870 450574 R hypothetical protein complement(449870..450574) Photobacterium profundum SS9 3121592 YP_132068.1 CDS PBPRB0395 NC_006371.1 450900 451325 D hypothetical protein 450900..451325 Photobacterium profundum SS9 3121907 YP_132069.1 CDS PBPRB0396 NC_006371.1 451522 453261 D malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 451522..453261 Photobacterium profundum SS9 3119973 YP_132070.1 CDS PBPRB0397 NC_006371.1 453595 454614 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 453595..454614 Photobacterium profundum SS9 3119972 YP_132071.1 CDS PBPRB0398 NC_006371.1 454805 455527 R hypothetical protein complement(454805..455527) Photobacterium profundum SS9 3121936 YP_132072.1 CDS PBPRB0399 NC_006371.1 455800 456369 R hypothetical protein complement(455800..456369) Photobacterium profundum SS9 3119971 YP_132073.1 CDS PBPRB0400 NC_006371.1 456366 456908 R cytochrome b561 complement(456366..456908) Photobacterium profundum SS9 3121861 YP_132074.1 CDS PBPRB0401 NC_006371.1 457200 457904 R hydrolase complement(457200..457904) Photobacterium profundum SS9 3121925 YP_132075.2 CDS fumC NC_006371.1 458054 459439 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(458054..459439) Photobacterium profundum SS9 3121863 YP_132076.1 CDS PBPRB0403 NC_006371.1 460055 461206 R hydrolase complement(460055..461206) Photobacterium profundum SS9 3121877 YP_132077.1 CDS PBPRB0404 NC_006371.1 461655 463079 R alpha-amylase complement(461655..463079) Photobacterium profundum SS9 3121878 YP_132078.1 CDS glgC NC_006371.1 463461 464678 D catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 463461..464678 Photobacterium profundum SS9 3119925 YP_132079.1 CDS glgA NC_006371.1 464668 466194 D catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 464668..466194 Photobacterium profundum SS9 3120142 YP_132080.1 CDS PBPRB0407 NC_006371.1 466486 468372 D methyl-accepting chemotaxis protein 466486..468372 Photobacterium profundum SS9 3120140 YP_132081.1 CDS PBPRB0408 NC_006371.1 468501 469181 R hypothetical protein complement(468501..469181) Photobacterium profundum SS9 3120141 YP_132082.1 CDS PBPRB0409 NC_006371.1 469335 470288 R transcriptional regulator complement(469335..470288) Photobacterium profundum SS9 3120139 YP_132083.1 CDS PBPRB0410 NC_006371.1 470489 472132 D glycosidase 470489..472132 Photobacterium profundum SS9 3120138 YP_132084.1 CDS PBPRB0411 NC_006371.1 472475 473335 D hypothetical protein 472475..473335 Photobacterium profundum SS9 3120135 YP_132085.1 CDS PBPRB0412 NC_006371.1 473443 475392 R glycogen protein GlgX complement(473443..475392) Photobacterium profundum SS9 3120136 YP_132086.1 CDS PBPRB0413 NC_006371.1 475911 477269 D maltoporin 475911..477269 Photobacterium profundum SS9 3120134 YP_132087.1 CDS PBPRB0414 NC_006371.1 477401 478279 D hypothetical protein 477401..478279 Photobacterium profundum SS9 3120132 YP_132088.1 CDS PBPRB0415 NC_006371.1 478415 480214 D glycosidase 478415..480214 Photobacterium profundum SS9 3120133 YP_132089.1 CDS malE NC_006371.1 480768 481952 D functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; maltose ABC transporter substrate-binding protein 480768..481952 Photobacterium profundum SS9 3120269 YP_132090.1 CDS PBPRB0417 NC_006371.1 482091 484886 D glycogen debranching enzyme 482091..484886 Photobacterium profundum SS9 3120131 YP_132091.1 CDS PBPRB0418 NC_006371.1 485808 486143 D hypothetical protein 485808..486143 Photobacterium profundum SS9 3120130 YP_132092.1 CDS PBPRB0419 NC_006371.1 486223 486540 D hypothetical protein 486223..486540 Photobacterium profundum SS9 3120129 YP_132093.1 CDS PBPRB0420 NC_006371.1 487537 488679 R with malEFG is involved in import of maltose/maltodextrin; maltose ABC transporter ATP-binding protein complement(487537..488679) Photobacterium profundum SS9 3120109 YP_132094.1 CDS malE NC_006371.1 489271 490452 D functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; maltose ABC transporter substrate-binding protein 489271..490452 Photobacterium profundum SS9 3120128 YP_132095.1 CDS malF NC_006371.1 490518 492092 D with MalKGE is involved in maltose transport into the cell; maltose transporter membrane protein 490518..492092 Photobacterium profundum SS9 3121297 YP_132096.1 CDS malG NC_006371.1 492104 492994 D with MalKFE is involved in the transport of maltose into the cell; maltose ABC transporter permease 492104..492994 Photobacterium profundum SS9 3120125 YP_132097.1 CDS PBPRB0424 NC_006371.1 493584 494825 R GGDEF family protein complement(493584..494825) Photobacterium profundum SS9 3120124 YP_132098.1 CDS PBPRB0425 NC_006371.1 495003 495545 R hypothetical protein complement(495003..495545) Photobacterium profundum SS9 3120126 YP_132099.1 CDS PBPRB0426 NC_006371.1 495692 497794 R Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II complement(495692..497794) Photobacterium profundum SS9 3120122 YP_132100.1 CDS PBPRB0427 NC_006371.1 498315 500186 D ATP-dependent RNA helicase 498315..500186 Photobacterium profundum SS9 3120093 YP_132101.1 CDS PBPRB0428 NC_006371.1 500800 501582 R hypothetical protein complement(500800..501582) Photobacterium profundum SS9 3120121 YP_132102.1 CDS PBPRB0429 NC_006371.1 501621 502817 R hypothetical protein complement(501621..502817) Photobacterium profundum SS9 3120120 YP_132103.1 CDS PBPRB0430 NC_006371.1 503245 504027 R hypothetical protein complement(503245..504027) Photobacterium profundum SS9 3120119 YP_132104.1 CDS PBPRB0431 NC_006371.1 504438 504767 D hypothetical protein 504438..504767 Photobacterium profundum SS9 3119982 YP_132105.1 CDS PBPRB0432 NC_006371.1 504882 505238 R hypothetical protein complement(504882..505238) Photobacterium profundum SS9 3119983 YP_132106.1 CDS PBPRB0433 NC_006371.1 505369 505761 R hypothetical protein complement(505369..505761) Photobacterium profundum SS9 3119984 YP_132107.1 CDS PBPRB0434 NC_006371.1 505963 506976 R hypothetical protein complement(505963..506976) Photobacterium profundum SS9 3119985 YP_132108.1 CDS PBPRB0435 NC_006371.1 507354 508058 D hypothetical protein 507354..508058 Photobacterium profundum SS9 3119986 YP_132109.1 CDS PBPRB0436 NC_006371.1 508103 508435 D hypothetical protein 508103..508435 Photobacterium profundum SS9 3119989 YP_132110.1 CDS PBPRB0437 NC_006371.1 508640 509269 D hypothetical protein 508640..509269 Photobacterium profundum SS9 3119990 YP_132111.1 CDS PBPRB0438 NC_006371.1 509440 510114 D hypothetical protein 509440..510114 Photobacterium profundum SS9 3119993 YP_132112.1 CDS PBPRB0439 NC_006371.1 510123 510626 D hypothetical protein 510123..510626 Photobacterium profundum SS9 3119995 YP_132113.1 CDS PBPRB0440 NC_006371.1 510928 512286 D Fis family transcriptional regulator 510928..512286 Photobacterium profundum SS9 3119997 YP_132114.1 CDS PBPRB0441 NC_006371.1 513060 514502 R glycosylase complement(513060..514502) Photobacterium profundum SS9 3119998 YP_132115.1 CDS PBPRB0442 NC_006371.1 515024 517159 D Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 515024..517159 Photobacterium profundum SS9 3119999 YP_132116.2 CDS nrdG NC_006371.1 517260 517733 D activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein 517260..517733 Photobacterium profundum SS9 3120001 YP_132117.1 CDS PBPRB0444 NC_006371.1 518059 518322 D hypothetical protein 518059..518322 Photobacterium profundum SS9 3120003 YP_132118.1 CDS PBPRB0445 NC_006371.1 518410 519204 R hypothetical protein complement(518410..519204) Photobacterium profundum SS9 3121836 YP_132119.1 CDS PBPRB0446 NC_006371.1 519213 519614 R hypothetical protein complement(519213..519614) Photobacterium profundum SS9 3120143 YP_132120.1 CDS PBPRB0447 NC_006371.1 520531 521925 D serine transporter 520531..521925 Photobacterium profundum SS9 3120145 YP_132121.1 CDS PBPRB0448 NC_006371.1 522066 522599 R dihydrofolate reductase complement(522066..522599) Photobacterium profundum SS9 3120146 YP_132122.1 CDS PBPRB0449 NC_006371.1 522786 523352 D TetR family transcriptional regulator 522786..523352 Photobacterium profundum SS9 3120147 YP_132123.1 CDS PBPRB0450 NC_006371.1 523374 523991 D hypothetical protein 523374..523991 Photobacterium profundum SS9 3120148 YP_132124.1 CDS PBPRB0451 NC_006371.1 524261 525826 R hypothetical protein complement(524261..525826) Photobacterium profundum SS9 3120149 YP_132125.1 CDS PBPRB0452 NC_006371.1 526465 526737 R hypothetical protein complement(526465..526737) Photobacterium profundum SS9 3120150 YP_132126.1 CDS PBPRB0453 NC_006371.1 526897 527277 R hypothetical protein complement(526897..527277) Photobacterium profundum SS9 3120153 YP_132127.1 CDS PBPRB0454 NC_006371.1 527490 528677 D catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 527490..528677 Photobacterium profundum SS9 3120152 YP_132128.1 CDS PBPRB0455 NC_006371.1 528827 529387 R hypothetical protein complement(528827..529387) Photobacterium profundum SS9 3120154 YP_132129.1 CDS PBPRB0456 NC_006371.1 529380 530642 R predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein; N-glycosyltransferase complement(529380..530642) Photobacterium profundum SS9 3120156 YP_132130.1 CDS PBPRB0457 NC_006371.1 530642 532606 R hypothetical protein complement(530642..532606) Photobacterium profundum SS9 3120157 YP_132131.1 CDS PBPRB0458 NC_006371.1 532603 535014 R hypothetical protein complement(532603..535014) Photobacterium profundum SS9 3120159 YP_132132.1 CDS PBPRB0459 NC_006371.1 535409 536293 R transcriptional regulator complement(535409..536293) Photobacterium profundum SS9 3120158 YP_132133.1 CDS PBPRB0460 NC_006371.1 536404 537846 R hyopthetical permease complement(536404..537846) Photobacterium profundum SS9 3120160 YP_132134.1 CDS PBPRB0461 NC_006371.1 538381 539274 D myo-inositol catabolismprotein iolB 538381..539274 Photobacterium profundum SS9 3120161 YP_132135.1 CDS PBPRB0462 NC_006371.1 539421 541295 D acetolactate synthase IolD 539421..541295 Photobacterium profundum SS9 3120289 YP_132136.1 CDS PBPRB0463 NC_006371.1 541343 542536 D oxidoreductase 541343..542536 Photobacterium profundum SS9 3120162 YP_132137.1 CDS PBPRB0464 NC_006371.1 542548 543543 D pfkB family carbohydrate kinase 542548..543543 Photobacterium profundum SS9 3120163 YP_132138.1 CDS PBPRB0465 NC_006371.1 544018 544890 D hypothetical protein 544018..544890 Photobacterium profundum SS9 3120164 YP_132139.1 CDS PBPRB0466 NC_006371.1 544903 545730 D fructose-1,6-bisphosphate aldolase 544903..545730 Photobacterium profundum SS9 3120165 YP_132140.1 CDS PBPRB0467 NC_006371.1 545810 546652 D transcriptional regulator 545810..546652 Photobacterium profundum SS9 3120166 YP_132141.1 CDS PBPRB0468 NC_006371.1 546724 547569 R hypothetical protein complement(546724..547569) Photobacterium profundum SS9 3120167 YP_132142.1 CDS PBPRB0469 NC_006371.1 548056 548886 D hypothetical protein 548056..548886 Photobacterium profundum SS9 3120168 YP_132143.1 CDS PBPRB0470 NC_006371.1 549006 549992 D myo-inositol 2-dehydrogenase 549006..549992 Photobacterium profundum SS9 3120169 YP_132144.1 CDS PBPRB0471 NC_006371.1 550153 550986 R transcriptional regulator complement(550153..550986) Photobacterium profundum SS9 3120170 YP_132145.1 CDS PBPRB0472 NC_006371.1 551216 552232 R sugar ABC transporter (permease) complement(551216..552232) Photobacterium profundum SS9 3120171 YP_132146.1 CDS PBPRB0473 NC_006371.1 552277 553770 R galactoside transport ATP-binding protein MglA complement(552277..553770) Photobacterium profundum SS9 3120172 YP_132147.1 CDS PBPRB0474 NC_006371.1 553843 554856 R sugar ABC transporter, periplasmic sugar-binding complement(553843..554856) Photobacterium profundum SS9 3120173 YP_132148.1 CDS PBPRB0475 NC_006371.1 555776 557683 D carbohydrate kinase 555776..557683 Photobacterium profundum SS9 3120178 YP_132149.1 CDS PBPRB0476 NC_006371.1 557695 559548 D acetolactate synthase 557695..559548 Photobacterium profundum SS9 3120174 YP_132150.1 CDS PBPRB0477 NC_006371.1 559580 560473 D myo-inositol catabolismprotein iolB 559580..560473 Photobacterium profundum SS9 3120179 YP_132151.1 CDS PBPRB0478 NC_006371.1 560485 561993 D aldehyde dehydrogenase 560485..561993 Photobacterium profundum SS9 3120180 YP_132152.1 CDS PBPRB0479 NC_006371.1 562088 562750 R hypothetical protein complement(562088..562750) Photobacterium profundum SS9 3120181 YP_132153.1 CDS PBPRB0480 NC_006371.1 562758 563306 R acetyltransferase complement(562758..563306) Photobacterium profundum SS9 3120183 YP_132154.1 CDS PBPRB0481 NC_006371.1 563398 563652 D hypothetical protein 563398..563652 Photobacterium profundum SS9 3120184 YP_132155.1 CDS PBPRB0482 NC_006371.1 563918 564424 D hypothetical protein 563918..564424 Photobacterium profundum SS9 3120185 YP_132156.1 CDS PBPRB0483 NC_006371.1 564701 565444 D hypothetical protein 564701..565444 Photobacterium profundum SS9 3120186 YP_132157.1 CDS PBPRB0484 NC_006371.1 565479 565874 D hypothetical protein 565479..565874 Photobacterium profundum SS9 3120187 YP_132158.1 CDS PBPRB0485 NC_006371.1 565962 566327 R hypothetical protein complement(565962..566327) Photobacterium profundum SS9 3120188 YP_132159.1 CDS PBPRB0486 NC_006371.1 566999 568804 D hypothetical protein 566999..568804 Photobacterium profundum SS9 3120017 YP_132160.1 CDS PBPRB0487 NC_006371.1 569443 569889 D hypothetical protein 569443..569889 Photobacterium profundum SS9 3120189 YP_132161.1 CDS PBPRB0488 NC_006371.1 569927 570505 D hypothetical protein 569927..570505 Photobacterium profundum SS9 3120191 YP_132162.1 CDS PBPRB0489 NC_006371.1 570816 571166 R hypothetical protein complement(570816..571166) Photobacterium profundum SS9 3120192 YP_132163.1 CDS PBPRB0490 NC_006371.1 571369 572928 R hypothetical protein complement(571369..572928) Photobacterium profundum SS9 3121671 YP_132164.1 CDS PBPRB0491 NC_006371.1 572931 574010 R hypothetical protein complement(572931..574010) Photobacterium profundum SS9 3120193 YP_132165.1 CDS PBPRB0492 NC_006371.1 574288 574884 D hypothetical protein 574288..574884 Photobacterium profundum SS9 3120195 YP_132166.1 CDS PBPRB0493 NC_006371.1 575309 575758 R hypothetical protein complement(575309..575758) Photobacterium profundum SS9 3120197 YP_132167.1 CDS PBPRB0494 NC_006371.1 575960 576556 R intracellular protease/amidase complement(575960..576556) Photobacterium profundum SS9 3120199 YP_132168.1 CDS PBPRB0495 NC_006371.1 576701 577033 R hypothetical protein complement(576701..577033) Photobacterium profundum SS9 3120201 YP_132169.1 CDS PBPRB0496 NC_006371.1 577504 578784 D hypothetical protein 577504..578784 Photobacterium profundum SS9 3120056 YP_132170.1 CDS PBPRB0497 NC_006371.1 578772 579218 R hypothetical protein complement(578772..579218) Photobacterium profundum SS9 3120202 YP_132171.1 CDS PBPRB0498 NC_006371.1 579659 580342 D hypothetical protein 579659..580342 Photobacterium profundum SS9 3120203 YP_132172.1 CDS PBPRB0499 NC_006371.1 580580 581092 D hypothetical protein 580580..581092 Photobacterium profundum SS9 3120633 YP_132173.1 CDS secD NC_006371.1 581353 583188 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 581353..583188 Photobacterium profundum SS9 3120204 YP_132174.1 CDS secF NC_006371.1 583193 584092 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 583193..584092 Photobacterium profundum SS9 3120502 YP_132175.1 CDS PBPRB0502 NC_006371.1 584298 584540 D hypothetical protein 584298..584540 Photobacterium profundum SS9 3120207 YP_132176.1 CDS PBPRB0503 NC_006371.1 585132 585431 R hypothetical protein complement(585132..585431) Photobacterium profundum SS9 3120208 YP_132177.1 CDS PBPRB0504 NC_006371.1 585524 587422 R permease complement(585524..587422) Photobacterium profundum SS9 3120209 YP_132178.1 CDS PBPRB0505 NC_006371.1 587650 588579 R hypothetical protein complement(587650..588579) Photobacterium profundum SS9 3120210 YP_132179.1 CDS PBPRB0506 NC_006371.1 588973 589323 R hypothetical protein complement(588973..589323) Photobacterium profundum SS9 3120212 YP_132180.1 CDS PBPRB0507 NC_006371.1 589602 591527 R ATP-dependent DNA helicase RecQ complement(589602..591527) Photobacterium profundum SS9 3120213 YP_132181.1 CDS PBPRB0508 NC_006371.1 591993 593549 R methyl-accepting chemotaxis protein complement(591993..593549) Photobacterium profundum SS9 3120214 YP_132182.1 CDS PBPRB0509 NC_006371.1 593859 595502 D methyl-accepting chemotaxisprotein 593859..595502 Photobacterium profundum SS9 3120215 YP_132183.1 CDS PBPRB0510 NC_006371.1 595618 597312 R long-chain-fatty-acid-CoA ligase complement(595618..597312) Photobacterium profundum SS9 3120216 YP_132184.1 CDS PBPRB0511 NC_006371.1 597620 598360 D hypothetical protein 597620..598360 Photobacterium profundum SS9 3120217 YP_132185.1 CDS PBPRB0512 NC_006371.1 598640 599101 D transcriptional regulator LuxT 598640..599101 Photobacterium profundum SS9 3120218 YP_132186.1 CDS PBPRB0513 NC_006371.1 599422 600828 D hypothetical protein 599422..600828 Photobacterium profundum SS9 3120221 YP_132187.1 CDS PBPRB0514 NC_006371.1 600825 601802 D hypothetical protein 600825..601802 Photobacterium profundum SS9 3120222 YP_132188.1 CDS PBPRB0515 NC_006371.1 601807 603015 D hypothetical protein 601807..603015 Photobacterium profundum SS9 3120293 YP_132189.1 CDS PBPRB0516 NC_006371.1 603012 604184 D hypothetical protein 603012..604184 Photobacterium profundum SS9 3120223 YP_132190.1 CDS PBPRB0517 NC_006371.1 604290 604760 R hypothetical protein complement(604290..604760) Photobacterium profundum SS9 3120224 YP_132191.1 CDS PBPRB0518 NC_006371.1 604855 605628 R transcriptional regulator complement(604855..605628) Photobacterium profundum SS9 3120225 YP_132192.1 CDS PBPRB0519 NC_006371.1 606208 606843 D hypothetical protein 606208..606843 Photobacterium profundum SS9 3120226 YP_132193.1 CDS PBPRB0520 NC_006371.1 607220 607549 D hypothetical protein 607220..607549 Photobacterium profundum SS9 3120229 YP_132194.1 CDS PBPRB0521 NC_006371.1 607673 608740 R hypothetical protein complement(607673..608740) Photobacterium profundum SS9 3120227 YP_132195.1 CDS PBPRB0522 NC_006371.1 608991 609434 R heat shock protein HslJ complement(608991..609434) Photobacterium profundum SS9 3120155 YP_132196.1 CDS PBPRB0523 NC_006371.1 609503 609853 R hypothetical protein complement(609503..609853) Photobacterium profundum SS9 3120196 YP_132197.1 CDS PBPRB0524 NC_006371.1 609865 610173 R hypothetical protein complement(609865..610173) Photobacterium profundum SS9 3120230 YP_132198.1 CDS PBPRB0525 NC_006371.1 610313 612427 R hypothetical protein complement(610313..612427) Photobacterium profundum SS9 3120231 YP_132199.1 CDS PBPRB0526 NC_006371.1 612689 613258 D hypothetical protein 612689..613258 Photobacterium profundum SS9 3121796 YP_132200.1 CDS PBPRB0527 NC_006371.1 613578 613886 R hypothetical protein complement(613578..613886) Photobacterium profundum SS9 3120232 YP_132201.1 CDS PBPRB0528 NC_006371.1 614360 615553 R catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; hydroxyglutarate oxidase complement(614360..615553) Photobacterium profundum SS9 3120042 YP_132202.1 CDS PBPRB0529 NC_006371.1 615784 616275 D acetyltransferase 615784..616275 Photobacterium profundum SS9 3120233 YP_132203.1 CDS PBPRB0530 NC_006371.1 616340 616879 R acetyltransferase complement(616340..616879) Photobacterium profundum SS9 3120235 YP_132204.1 CDS PBPRB0531 NC_006371.1 617192 617635 R hypothetical protein complement(617192..617635) Photobacterium profundum SS9 3120236 YP_132205.1 CDS PBPRB0532 NC_006371.1 618540 620150 R hypothetical protein complement(618540..620150) Photobacterium profundum SS9 3120238 YP_132206.1 CDS PBPRB0533 NC_006371.1 620436 621167 D transposase 620436..621167 Photobacterium profundum SS9 3120239 YP_132207.1 CDS PBPRB0534 NC_006371.1 621155 622525 R hypothetical protein complement(621155..622525) Photobacterium profundum SS9 3120240 YP_132208.1 CDS PBPRB0535 NC_006371.1 623608 624027 R hypothetical protein complement(623608..624027) Photobacterium profundum SS9 3120241 YP_132209.1 CDS PBPRB0536 NC_006371.1 624874 625632 R amino acid ABC transporter complement(624874..625632) Photobacterium profundum SS9 3120242 YP_132210.1 CDS PBPRB0537 NC_006371.1 625712 626263 D two-component sensor 625712..626263 Photobacterium profundum SS9 3120243 YP_132211.1 CDS PBPRB0538 NC_006371.1 626221 628263 D two-component sensor 626221..628263 Photobacterium profundum SS9 3120244 YP_132212.1 CDS PBPRB0539 NC_006371.1 628330 628608 R hypothetical protein complement(628330..628608) Photobacterium profundum SS9 3120245 YP_132213.1 CDS PBPRB0540 NC_006371.1 628615 629811 R hypothetical protein complement(628615..629811) Photobacterium profundum SS9 3120246 YP_132214.1 CDS PBPRB0541 NC_006371.1 630462 632786 D chitinase 630462..632786 Photobacterium profundum SS9 3120247 YP_132215.1 CDS PBPRB0542 NC_006371.1 633178 634014 D ABC transporter ATP-binding protein 633178..634014 Photobacterium profundum SS9 3120249 YP_132216.1 CDS PBPRB0543 NC_006371.1 634011 634877 D hipothetical ABC transporter permease protein 634011..634877 Photobacterium profundum SS9 3120250 YP_132217.1 CDS PBPRB0544 NC_006371.1 634816 635886 D hypothetical protein 634816..635886 Photobacterium profundum SS9 3120251 YP_132218.1 CDS PBPRB0545 NC_006371.1 636032 637162 R hypothetical protein complement(636032..637162) Photobacterium profundum SS9 3120252 YP_132219.1 CDS PBPRB0546 NC_006371.1 637164 637799 R hypothetical protein complement(637164..637799) Photobacterium profundum SS9 3120254 YP_132220.1 CDS PBPRB0547 NC_006371.1 638107 638502 D hypothetical protein 638107..638502 Photobacterium profundum SS9 3120255 YP_132221.1 CDS PBPRB0548 NC_006371.1 638744 639367 D NAD(P)H oxidoreductase 638744..639367 Photobacterium profundum SS9 3120256 YP_132222.1 CDS PBPRB0549 NC_006371.1 639480 640049 D hypothetical protein 639480..640049 Photobacterium profundum SS9 3120258 YP_132223.1 CDS PBPRB0550 NC_006371.1 639946 641178 D TrkA family protein 639946..641178 Photobacterium profundum SS9 3120259 YP_132224.2 CDS PBPRB0551 NC_006371.1 641435 642676 D integrase 641435..642676 Photobacterium profundum SS9 3120211 YP_277298.1 CDS PBPR_B2026 NC_006371.1 642718 643005 R hypothetical protein complement(642718..643005) Photobacterium profundum SS9 3562287 YP_132225.2 CDS PBPRB0552 NC_006371.1 643031 643633 R hypothetical protein complement(643031..643633) Photobacterium profundum SS9 3120260 YP_132226.1 CDS PBPRB0553 NC_006371.1 643999 644508 D hypothetical protein 643999..644508 Photobacterium profundum SS9 3120261 YP_132227.1 CDS PBPRB0554 NC_006371.1 644520 644903 D hypothetical protein 644520..644903 Photobacterium profundum SS9 3121912 YP_277299.1 CDS PBPR_B2027 NC_006371.1 644914 645123 D hypothetical protein 644914..645123 Photobacterium profundum SS9 3562288 YP_132228.1 CDS PBPRB0555 NC_006371.1 645430 646380 R hypothetical protein complement(645430..646380) Photobacterium profundum SS9 3120262 YP_277300.1 CDS PBPR_B2028 NC_006371.1 646535 646693 D hypothetical protein 646535..646693 Photobacterium profundum SS9 3562289 YP_132229.1 CDS PBPRB0556 NC_006371.1 647149 647403 D hypothetical protein 647149..647403 Photobacterium profundum SS9 3120263 YP_277301.1 CDS PBPR_B2029 NC_006371.1 647884 648039 D hypothetical protein 647884..648039 Photobacterium profundum SS9 3562290 YP_132230.2 CDS PBPRB0557 NC_006371.1 648079 648384 D hypotethical transcriptional regulator 648079..648384 Photobacterium profundum SS9 3120264 YP_132231.1 CDS PBPRB0558 NC_006371.1 648365 649321 D hypothetical protein 648365..649321 Photobacterium profundum SS9 3120265 YP_277302.1 CDS PBPR_B2030 NC_006371.1 649590 649823 R hypothetical protein complement(649590..649823) Photobacterium profundum SS9 3562281 YP_277303.1 CDS PBPR_B2031 NC_006371.1 649826 650002 R hypothetical protein complement(649826..650002) Photobacterium profundum SS9 3562282 YP_132232.1 CDS PBPRB0559 NC_006371.1 650013 651059 R similar to PBPRB0558; Gifsy-1 prophage complement(650013..651059) Photobacterium profundum SS9 3120270 YP_132233.1 CDS PBPRB0560 NC_006371.1 651071 654517 R exodeoxyribonuclease VIII complement(651071..654517) Photobacterium profundum SS9 3120266 YP_277304.1 CDS PBPR_B2032 NC_006371.1 654517 654651 R hypothetical protein complement(654517..654651) Photobacterium profundum SS9 3562283 YP_132234.1 CDS PBPRB0561 NC_006371.1 654998 655327 R hypothetical protein complement(654998..655327) Photobacterium profundum SS9 3120267 YP_132235.2 CDS PBPRB0562 NC_006371.1 655456 655677 D hypothetical protein 655456..655677 Photobacterium profundum SS9 3120182 YP_132236.1 CDS PBPRB0563 NC_006371.1 655683 656573 D hypothetical protein 655683..656573 Photobacterium profundum SS9 3120268 YP_277305.1 CDS PBPR_B2033 NC_006371.1 656566 656760 D hypothetical protein 656566..656760 Photobacterium profundum SS9 3562284 YP_132237.1 CDS PBPRB0564 NC_006371.1 656906 657187 D hypothetical protein 656906..657187 Photobacterium profundum SS9 3120271 YP_277306.1 CDS PBPR_B2034 NC_006371.1 657293 657484 D hypothetical protein 657293..657484 Photobacterium profundum SS9 3562285 YP_132238.1 CDS PBPRB0565 NC_006371.1 657670 658149 D similar to terminase small subunit gp1 found in GenBank Accession Number AAO06064 for Enterobacteria phage epsilon15; terminase small subunit 657670..658149 Photobacterium profundum SS9 3120272 YP_132239.1 CDS PBPRB0566 NC_006371.1 658149 659690 D DNA pacase B subunit; similar to terminase large subunit gp2 found in GenBank Accession Number AAO06065 for Enterobacteria phage epsilon15; terminase large subunit 658149..659690 Photobacterium profundum SS9 3120273 YP_277307.1 CDS PBPR_B2035 NC_006371.1 659706 659915 D hypothetical protein 659706..659915 Photobacterium profundum SS9 3562286 YP_132240.1 CDS PBPRB0567 NC_006371.1 659918 661576 D similar to protein gp4 found in GenBank Accession Number AAO06067 for Enterobacteria phage epsilon15; head-tail connector protein 659918..661576 Photobacterium profundum SS9 3120275 YP_132241.1 CDS PBPRB0568 NC_006371.1 661576 661899 D similar to protein gp5 found in GenBank Accession Number AAO06068 for Enterobacteria phage epsilon15; hypothetical protein 661576..661899 Photobacterium profundum SS9 3120276 YP_132242.1 CDS PBPRB0569 NC_006371.1 661889 662722 D similar to endoprotease gp6 found in GenBank Accession Number AAO06069 for Enterobacteria phage epsilon15; endoprotease 661889..662722 Photobacterium profundum SS9 3120279 YP_132243.1 CDS PBPRB0570 NC_006371.1 662737 663726 D similar to protein gp7 found in GenBank Accession Number AAO06070 for Enterobacteria phage epsilon15; hypothetical protein 662737..663726 Photobacterium profundum SS9 3120278 YP_132244.1 CDS PBPRB0571 NC_006371.1 663793 664224 D similar to protein gp8 found in GenBank Accession Number AAO06071 Enterobacteria phage epsilon15; hypothetical protein 663793..664224 Photobacterium profundum SS9 3120280 YP_132245.2 CDS PBPRB0572 NC_006371.1 664236 664721 D hypothetical protein 664236..664721 Photobacterium profundum SS9 3120559 YP_132246.1 CDS PBPRB0573 NC_006371.1 664832 665455 D similar to protein gp11 found in GenBank Accession Number AAO06074 Enterobacteria phage epsilon15; hypothetical protein 664832..665455 Photobacterium profundum SS9 3120281 YP_132247.1 CDS PBPRB0574 NC_006371.1 665455 668214 D similar to protein gp12 found in GenBank Accession Number AAO06075 Enterobacteria phage epsilon15; hypothetical protein 665455..668214 Photobacterium profundum SS9 3120282 YP_277308.1 CDS PBPR_B2036 NC_006371.1 668201 668662 D similar to protein gp13 found in GenBank Accession Number AAO06076 for Enterobacteria phage epsilon15; hypothetical protein 668201..668662 Photobacterium profundum SS9 3562280 YP_132248.1 CDS PBPRB0575 NC_006371.1 668647 669171 D similar to protein gp14 found in GenBank Accession Number AAO06077 Enterobacteria phage epsilon15; hypothetical protein 668647..669171 Photobacterium profundum SS9 3120283 YP_132249.1 CDS PBPRB0576 NC_006371.1 669181 670890 D similar to protein gp15 found in GenBank Accession Number AAO06078 for Enterobacteria phage epsilon15; hypothetical protein 669181..670890 Photobacterium profundum SS9 3120287 YP_132250.1 CDS PBPRB0577 NC_006371.1 670890 677033 D hypothetical protein 670890..677033 Photobacterium profundum SS9 3120284 YP_132251.1 CDS PBPRB0578 NC_006371.1 677177 679552 D similar to tail fiber protein gp20 found in GenBank Accession Number AAO06083 for Enterobacteria phage epsilon15; tail fiber protein 677177..679552 Photobacterium profundum SS9 3120285 YP_132252.1 CDS PBPRB0579 NC_006371.1 679818 681944 R toxin secretion ATP-binding protein complement(679818..681944) Photobacterium profundum SS9 3120288 YP_132253.1 CDS PBPRB0580 NC_006371.1 681941 683893 R hypothetical protein complement(681941..683893) Photobacterium profundum SS9 3120292 YP_132254.1 CDS PBPRB0581 NC_006371.1 683890 684555 R hypothetical protein complement(683890..684555) Photobacterium profundum SS9 3120290 YP_132255.1 CDS PBPRB0582 NC_006371.1 684584 685174 R outer membrane protein complement(684584..685174) Photobacterium profundum SS9 3120291 YP_132256.1 CDS PBPRB0583 NC_006371.1 685192 686505 R agglutination protein complement(685192..686505) Photobacterium profundum SS9 3120294 YP_132257.1 CDS PBPRB0584 NC_006371.1 686511 687941 R HlyD family secretion protein complement(686511..687941) Photobacterium profundum SS9 3120295 YP_132258.1 CDS PBPRB0585 NC_006371.1 688506 692972 D hypothetical protein 688506..692972 Photobacterium profundum SS9 3120296 YP_132259.1 CDS PBPRB0586 NC_006371.1 693087 693440 D hypothetical protein 693087..693440 Photobacterium profundum SS9 3120297 YP_132260.1 CDS PBPRB0587 NC_006371.1 693409 694584 D hypothetical protein 693409..694584 Photobacterium profundum SS9 3120299 YP_132261.1 CDS PBPRB0588 NC_006371.1 693432 693803 R hypothetical protein complement(693432..693803) Photobacterium profundum SS9 3120300 YP_132262.1 CDS PBPRB0589 NC_006371.1 694188 694454 R hypothetical protein complement(694188..694454) Photobacterium profundum SS9 3120301 YP_132263.1 CDS PBPRB0590 NC_006371.1 694454 708508 D hypothetical protein 694454..708508 Photobacterium profundum SS9 3121474 YP_132264.1 CDS PBPRB0591 NC_006371.1 708774 710108 D catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 708774..710108 Photobacterium profundum SS9 3120298 YP_132265.1 CDS PBPRB0592 NC_006371.1 710516 710893 D hypothetical protein 710516..710893 Photobacterium profundum SS9 3120303 YP_132266.1 CDS PBPRB0593 NC_006371.1 710890 712377 D hypothetical protein 710890..712377 Photobacterium profundum SS9 3120176 YP_132267.1 CDS PBPRB0594 NC_006371.1 712794 713468 D hypothetical protein 712794..713468 Photobacterium profundum SS9 3120304 YP_132268.1 CDS PBPRB0595 NC_006371.1 713499 714494 D hypothetical protein 713499..714494 Photobacterium profundum SS9 3120305 YP_132269.1 CDS PBPRB0596 NC_006371.1 714586 714969 R glyoxylase I family protein complement(714586..714969) Photobacterium profundum SS9 3120306 YP_132270.1 CDS PBPRB0597 NC_006371.1 715141 716250 R N-ethylmaleimide reductase complement(715141..716250) Photobacterium profundum SS9 3120307 YP_132271.1 CDS PBPRB0598 NC_006371.1 716399 717313 D transcriptional regulator 716399..717313 Photobacterium profundum SS9 3120308 YP_132272.1 CDS PBPRB0599 NC_006371.1 717727 718248 D nucleoprotein/polynucleotide-associated enzyme 717727..718248 Photobacterium profundum SS9 3120309 YP_132273.1 CDS PBPRB0600 NC_006371.1 718444 719529 R hypothetical protein complement(718444..719529) Photobacterium profundum SS9 3120310 YP_132274.1 CDS PBPRB0601 NC_006371.1 719556 720524 R tight adherence TadC-like transmembrane protein complement(719556..720524) Photobacterium profundum SS9 3120311 YP_132275.1 CDS PBPRB0602 NC_006371.1 720526 721392 R Flp pilus assembly protein TadB complement(720526..721392) Photobacterium profundum SS9 3120312 YP_132276.1 CDS PBPRB0603 NC_006371.1 721500 722888 R pilus assembly protein complement(721500..722888) Photobacterium profundum SS9 3120313 YP_132277.1 CDS PBPRB0604 NC_006371.1 722891 724129 R hypothetical protein complement(722891..724129) Photobacterium profundum SS9 3120314 YP_132278.1 CDS PBPRB0605 NC_006371.1 724143 724631 R hypothetical protein complement(724143..724631) Photobacterium profundum SS9 3120315 YP_132279.1 CDS PBPRB0606 NC_006371.1 724631 725077 R hypothetical protein complement(724631..725077) Photobacterium profundum SS9 3120316 YP_132280.1 CDS PBPRB0607 NC_006371.1 725077 726387 R hypothetical protein complement(725077..726387) Photobacterium profundum SS9 3120317 YP_132281.1 CDS PBPRB0608 NC_006371.1 726688 727341 R pilus assembly transmembrane protein complement(726688..727341) Photobacterium profundum SS9 3120318 YP_132282.1 CDS PBPRB0609 NC_006371.1 727348 728439 R hypothetical protein complement(727348..728439) Photobacterium profundum SS9 3120319 YP_132283.1 CDS PBPRB0610 NC_006371.1 728676 729566 R Flp pilus assembly protein complement(728676..729566) Photobacterium profundum SS9 3120320 YP_132284.1 CDS PBPRB0611 NC_006371.1 729585 730379 R Flp pilus assembly protein complement(729585..730379) Photobacterium profundum SS9 3120321 YP_132285.1 CDS PBPRB0612 NC_006371.1 730372 731718 R hypothetical protein complement(730372..731718) Photobacterium profundum SS9 3120322 YP_132286.1 CDS PBPRB0613 NC_006371.1 731734 732231 R hypothetical protein complement(731734..732231) Photobacterium profundum SS9 3120323 YP_132287.1 CDS PBPRB0614 NC_006371.1 733007 734716 D phosphomannomutase 733007..734716 Photobacterium profundum SS9 3120326 YP_132288.1 CDS PBPRB0615 NC_006371.1 734836 735282 R hypothetical protein complement(734836..735282) Photobacterium profundum SS9 3120327 YP_132289.1 CDS PBPRB0616 NC_006371.1 735560 737950 D carboxypeptidase 735560..737950 Photobacterium profundum SS9 3120330 YP_132290.1 CDS PBPRB0617 NC_006371.1 738043 738615 D MutT/nudix family protein 738043..738615 Photobacterium profundum SS9 3120329 YP_132291.1 CDS PBPRB0618 NC_006371.1 739113 740186 D hypothetical protein 739113..740186 Photobacterium profundum SS9 3120331 YP_132292.1 CDS PBPRB0619 NC_006371.1 740179 740487 D hypothetical protein 740179..740487 Photobacterium profundum SS9 3120335 YP_132293.1 CDS PBPRB0620 NC_006371.1 740492 742057 R hypothetical protein complement(740492..742057) Photobacterium profundum SS9 3120336 YP_132294.1 CDS PBPRB0621 NC_006371.1 742237 745362 D hypothetical protein 742237..745362 Photobacterium profundum SS9 3120673 YP_132295.1 CDS PBPRB0622 NC_006371.1 745371 745658 D hypothetical protein 745371..745658 Photobacterium profundum SS9 3120338 YP_132296.1 CDS PBPRB0623 NC_006371.1 745649 746047 D hypothetical protein 745649..746047 Photobacterium profundum SS9 3120346 YP_132297.1 CDS PBPRB0624 NC_006371.1 746350 746982 D hypothetical protein 746350..746982 Photobacterium profundum SS9 3120348 YP_132298.1 CDS PBPRB0625 NC_006371.1 747220 747603 D hypothetical protein 747220..747603 Photobacterium profundum SS9 3120349 YP_132299.1 CDS PBPRB0626 NC_006371.1 747707 748300 D hypothetical protein 747707..748300 Photobacterium profundum SS9 3120350 YP_132300.1 CDS PBPRB0627 NC_006371.1 748628 749644 D transposase 748628..749644 Photobacterium profundum SS9 3120352 YP_132301.1 CDS PBPRB0628 NC_006371.1 750100 750717 D fumarylacetoacetate hydrolase family protein 750100..750717 Photobacterium profundum SS9 3120356 YP_132302.1 CDS PBPRB0629 NC_006371.1 751031 751300 D hypothetical protein 751031..751300 Photobacterium profundum SS9 3120357 YP_132303.1 CDS PBPRB0630 NC_006371.1 751412 752890 R hypothetical protein complement(751412..752890) Photobacterium profundum SS9 3120359 YP_132304.1 CDS PBPRB0631 NC_006371.1 752896 754287 R hypothetical protein complement(752896..754287) Photobacterium profundum SS9 3120220 YP_132305.1 CDS PBPRB0632 NC_006371.1 754518 754940 D hypothetical protein 754518..754940 Photobacterium profundum SS9 3120360 YP_132306.1 CDS PBPRB0633 NC_006371.1 755214 755804 D hypothetical protein 755214..755804 Photobacterium profundum SS9 3120022 YP_132307.1 CDS PBPRB0634 NC_006371.1 756223 756648 R hypothetical protein complement(756223..756648) Photobacterium profundum SS9 3120362 YP_132308.1 CDS PBPRB0635 NC_006371.1 756755 758365 R hypothetical protein complement(756755..758365) Photobacterium profundum SS9 3120365 YP_132309.1 CDS PBPRB0636 NC_006371.1 758477 758983 R metal-dependent hydrolase complement(758477..758983) Photobacterium profundum SS9 3120368 YP_132310.1 CDS PBPRB0637 NC_006371.1 759308 759760 D hypothetical protein 759308..759760 Photobacterium profundum SS9 3120372 YP_132311.1 CDS PBPRB0638 NC_006371.1 759923 761371 D succinate-semialdehyde dehydrogenase 759923..761371 Photobacterium profundum SS9 3120373 YP_132312.1 CDS mogA NC_006371.1 761642 762175 D forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 761642..762175 Photobacterium profundum SS9 3120375 YP_132313.1 CDS PBPRB0640 NC_006371.1 762244 762927 D hypothetical protein 762244..762927 Photobacterium profundum SS9 3120376 YP_132314.1 CDS PBPRB0641 NC_006371.1 763042 764508 R hypothetical protein complement(763042..764508) Photobacterium profundum SS9 3120377 YP_132315.1 CDS PBPRB0642 NC_006371.1 765310 766284 D outer membrane protein OmpA 765310..766284 Photobacterium profundum SS9 3120378 YP_132316.1 CDS PBPRB0643 NC_006371.1 766525 767199 R cytochrome c-type protein complement(766525..767199) Photobacterium profundum SS9 3121900 YP_132317.1 CDS PBPRB0644 NC_006371.1 767192 767887 R hypothetical protein complement(767192..767887) Photobacterium profundum SS9 3120380 YP_132318.1 CDS PBPRB0645 NC_006371.1 767919 769445 R hypothetical protein complement(767919..769445) Photobacterium profundum SS9 3120383 YP_132319.1 CDS PBPRB0646 NC_006371.1 769442 770029 R hypothetical protein complement(769442..770029) Photobacterium profundum SS9 3120385 YP_132320.1 CDS PBPRB0647 NC_006371.1 770041 770673 R hypothetical protein complement(770041..770673) Photobacterium profundum SS9 3120389 YP_132321.1 CDS PBPRB0648 NC_006371.1 770683 771747 R ferredoxin-type protein complement(770683..771747) Photobacterium profundum SS9 3120390 YP_132322.1 CDS PBPRB0649 NC_006371.1 771747 772352 R ferredoxin-type protein napG complement(771747..772352) Photobacterium profundum SS9 3120391 YP_132323.1 CDS PBPRB0650 NC_006371.1 772526 775225 R hypothetical protein complement(772526..775225) Photobacterium profundum SS9 3120394 YP_132324.1 CDS PBPRB0651 NC_006371.1 775240 775890 R hypothetical protein complement(775240..775890) Photobacterium profundum SS9 3120398 YP_132325.1 CDS PBPRB0652 NC_006371.1 776320 778674 D hypothetical protein 776320..778674 Photobacterium profundum SS9 3120403 YP_132326.1 CDS PBPRB0653 NC_006371.1 778767 780356 R methyl-accepting chemotaxis protein complement(778767..780356) Photobacterium profundum SS9 3120404 YP_132327.1 CDS PBPRB0654 NC_006371.1 780609 780935 D hypothetical protein 780609..780935 Photobacterium profundum SS9 3120405 YP_132328.1 CDS PBPRB0655 NC_006371.1 781021 781323 D transposase 781021..781323 Photobacterium profundum SS9 3120408 YP_132329.1 CDS PBPRB0656 NC_006371.1 781357 783006 R hypothetical protein complement(781357..783006) Photobacterium profundum SS9 3120412 YP_132330.1 CDS PBPRB0657 NC_006371.1 783369 784553 R transposase complement(783369..784553) Photobacterium profundum SS9 3120415 YP_132331.1 CDS PBPRB0658 NC_006371.1 784625 785890 D hypothetical protein 784625..785890 Photobacterium profundum SS9 3120417 YP_132332.1 CDS PBPRB0659 NC_006371.1 786152 786682 D hypothetical protein 786152..786682 Photobacterium profundum SS9 3119992 YP_132333.1 CDS PBPRB0660 NC_006371.1 787017 787553 D hypothetical protein 787017..787553 Photobacterium profundum SS9 3120418 YP_132334.1 CDS PBPRB0661 NC_006371.1 787715 788506 R hypothetical protein complement(787715..788506) Photobacterium profundum SS9 3120419 YP_132335.1 CDS PBPRB0662 NC_006371.1 788740 789174 D hypothetical protein 788740..789174 Photobacterium profundum SS9 3120432 YP_132336.1 CDS PBPRB0663 NC_006371.1 789175 789411 D hypothetical protein 789175..789411 Photobacterium profundum SS9 3120435 YP_132337.1 CDS PBPRB0664 NC_006371.1 789677 790570 D hypothetical protein 789677..790570 Photobacterium profundum SS9 3120433 YP_132338.1 CDS PBPRB0665 NC_006371.1 790650 791267 D hypothetical protein 790650..791267 Photobacterium profundum SS9 3120442 YP_132339.1 CDS PBPRB0666 NC_006371.1 791352 792176 R hypothetical protein complement(791352..792176) Photobacterium profundum SS9 3119922 YP_132340.1 CDS PBPRB0667 NC_006371.1 792370 792819 D cytochrome c 792370..792819 Photobacterium profundum SS9 3120445 YP_132341.1 CDS PBPRB0668 NC_006371.1 792937 793620 R b-type cytochrome complement(792937..793620) Photobacterium profundum SS9 3120452 YP_132342.1 CDS PBPRB0669 NC_006371.1 793837 794157 R hypothetical protein complement(793837..794157) Photobacterium profundum SS9 3120459 YP_132343.1 CDS PBPRB0670 NC_006371.1 794359 794625 D hypothetical protein 794359..794625 Photobacterium profundum SS9 3120110 YP_132344.1 CDS PBPRB0671 NC_006371.1 794856 795806 D hypothetical protein 794856..795806 Photobacterium profundum SS9 3120461 YP_132345.1 CDS PBPRB0672 NC_006371.1 795831 796130 R isomerase complement(795831..796130) Photobacterium profundum SS9 3120462 YP_132346.1 CDS PBPRB0673 NC_006371.1 796543 797832 R hypothetical protein complement(796543..797832) Photobacterium profundum SS9 3120465 YP_132347.1 CDS PBPRB0674 NC_006371.1 798219 798671 R hypothetical protein complement(798219..798671) Photobacterium profundum SS9 3120472 YP_132348.1 CDS PBPRB0675 NC_006371.1 798923 799870 D sensory transduction system regulatory protein 798923..799870 Photobacterium profundum SS9 3120473 YP_132349.1 CDS PBPRB0676 NC_006371.1 800107 800775 D hypothetical protein 800107..800775 Photobacterium profundum SS9 3120237 YP_132350.1 CDS PBPRB0677 NC_006371.1 800861 801211 D hypothetical protein 800861..801211 Photobacterium profundum SS9 3120595 YP_132351.1 CDS PBPRB0678 NC_006371.1 801537 802076 D hypothetical protein 801537..802076 Photobacterium profundum SS9 3120480 YP_132352.1 CDS PBPRB0679 NC_006371.1 802157 802408 R hypothetical protein complement(802157..802408) Photobacterium profundum SS9 3120482 YP_132353.1 CDS PBPRB0680 NC_006371.1 802562 803215 D hypothetical protein 802562..803215 Photobacterium profundum SS9 3120483 YP_132354.1 CDS PBPRB0681 NC_006371.1 803324 803992 R glutathione S-transferase complement(803324..803992) Photobacterium profundum SS9 3120485 YP_132355.1 CDS PBPRB0682 NC_006371.1 804045 804656 R glutathione S-transferase complement(804045..804656) Photobacterium profundum SS9 3120486 YP_132356.1 CDS PBPRB0683 NC_006371.1 804767 805354 D TetR family transcriptional regulator 804767..805354 Photobacterium profundum SS9 3120490 YP_132357.1 CDS PBPRB0684 NC_006371.1 805455 806123 R transcriptional activator complement(805455..806123) Photobacterium profundum SS9 3120496 YP_132358.1 CDS PBPRB0685 NC_006371.1 806159 807100 R ABC transporter substrate-binding protein complement(806159..807100) Photobacterium profundum SS9 3120733 YP_132359.1 CDS PBPRB0686 NC_006371.1 807188 808066 R ABC transporter permease protein complement(807188..808066) Photobacterium profundum SS9 3120498 YP_132360.1 CDS PBPRB0687 NC_006371.1 808002 808784 R hypothetical protein complement(808002..808784) Photobacterium profundum SS9 3120618 YP_132361.1 CDS PBPRB0688 NC_006371.1 808799 809629 R catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase complement(808799..809629) Photobacterium profundum SS9 3120499 YP_132362.1 CDS PBPRB0689 NC_006371.1 809990 810559 R phnA protein complement(809990..810559) Photobacterium profundum SS9 3120500 YP_132363.1 CDS PBPRB0691 NC_006371.1 811022 811333 R hypothetical protein complement(811022..811333) Photobacterium profundum SS9 3120716 YP_132364.1 CDS PBPRB0692 NC_006371.1 811601 812782 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 811601..812782 Photobacterium profundum SS9 3120508 YP_132365.1 CDS PBPRB0693 NC_006371.1 813154 813498 R hypothetical protein complement(813154..813498) Photobacterium profundum SS9 3120513 YP_132366.1 CDS PBPRB0694 NC_006371.1 813887 814699 D hypothetical protein 813887..814699 Photobacterium profundum SS9 3120514 YP_132367.1 CDS PBPRB0695 NC_006371.1 814701 816068 D biopolymer transport proteinexbb-related protein 814701..816068 Photobacterium profundum SS9 3120515 YP_132368.1 CDS PBPRB0696 NC_006371.1 816068 816598 D TonB system transport protein ExbB2 816068..816598 Photobacterium profundum SS9 3120518 YP_132369.1 CDS PBPRB0697 NC_006371.1 816598 817002 D TonB system transport protein ExbD2 816598..817002 Photobacterium profundum SS9 3120519 YP_132370.1 CDS PBPRB0698 NC_006371.1 817002 817673 D TonB2 protein 817002..817673 Photobacterium profundum SS9 3120523 YP_132371.1 CDS PBPRB0699 NC_006371.1 817670 818845 D hypothetical protein 817670..818845 Photobacterium profundum SS9 3120525 YP_132372.1 CDS PBPRB0700 NC_006371.1 818930 819598 D transcriptional regulator CpxR 818930..819598 Photobacterium profundum SS9 3120526 YP_132373.1 CDS PBPRB0701 NC_006371.1 819630 821021 D two-component system sensor kinase 819630..821021 Photobacterium profundum SS9 3120527 YP_132374.1 CDS PBPRB0702 NC_006371.1 821117 822964 R oligoendopeptidase F complement(821117..822964) Photobacterium profundum SS9 3120533 YP_132375.1 CDS PBPRB0703 NC_006371.1 823180 823710 D acetyltransferase 823180..823710 Photobacterium profundum SS9 3120534 YP_132376.1 CDS PBPRB0704 NC_006371.1 823782 826091 R hypothetical protein complement(823782..826091) Photobacterium profundum SS9 3120541 YP_132377.1 CDS PBPRB0705 NC_006371.1 826148 827020 R hypothetical protein complement(826148..827020) Photobacterium profundum SS9 3120542 YP_132378.1 CDS PBPRB0706 NC_006371.1 827053 827721 R transcriptional regulator complement(827053..827721) Photobacterium profundum SS9 3120543 YP_132379.1 CDS PBPRB0707 NC_006371.1 827697 829163 R sensor histidine kinase complement(827697..829163) Photobacterium profundum SS9 3120544 YP_132380.1 CDS PBPRB0708 NC_006371.1 829373 832039 R hypothetical protein complement(829373..832039) Photobacterium profundum SS9 3120546 YP_132381.1 CDS PBPRB0709 NC_006371.1 832042 833580 R hypothetical protein complement(832042..833580) Photobacterium profundum SS9 3120549 YP_132382.1 CDS PBPRB0710 NC_006371.1 833577 834575 R hypothetical protein complement(833577..834575) Photobacterium profundum SS9 3120555 YP_132383.1 CDS PBPRB0711 NC_006371.1 834757 835860 D carboxypeptidase G2 834757..835860 Photobacterium profundum SS9 3120562 YP_132384.1 CDS PBPRB0712 NC_006371.1 835941 836879 R transcriptional regulator complement(835941..836879) Photobacterium profundum SS9 3120569 YP_132385.1 CDS PBPRB0713 NC_006371.1 837159 837782 R hypothetical protein complement(837159..837782) Photobacterium profundum SS9 3121584 YP_132386.1 CDS PBPRB0714 NC_006371.1 837890 839026 R ATPase component, ABC-type sugar transport systems complement(837890..839026) Photobacterium profundum SS9 3120570 YP_132387.1 CDS PBPRB0715 NC_006371.1 839026 839940 R maltose ABC transporter permease complement(839026..839940) Photobacterium profundum SS9 3121541 YP_132388.1 CDS PBPRB0716 NC_006371.1 839940 841238 R sugar ABC transporter permease protein complement(839940..841238) Photobacterium profundum SS9 3120591 YP_132389.1 CDS PBPRB0717 NC_006371.1 841354 842487 R maltose/maltodextrin-binding protein complement(841354..842487) Photobacterium profundum SS9 3120571 YP_132390.1 CDS PBPRB0718 NC_006371.1 843314 844288 D periplasmic binding protein 843314..844288 Photobacterium profundum SS9 3120577 YP_132391.1 CDS PBPRB0719 NC_006371.1 844322 845842 D ATP-binding protein of abctransporter 844322..845842 Photobacterium profundum SS9 3120582 YP_132392.1 CDS PBPRB0720 NC_006371.1 845835 846833 D permease of ABC transporter 845835..846833 Photobacterium profundum SS9 3120587 YP_132393.1 CDS PBPRB0721 NC_006371.1 846833 847792 D ABC transporter, permease protein 846833..847792 Photobacterium profundum SS9 3121291 YP_132394.1 CDS PBPRB0722 NC_006371.1 847806 849440 D carbohydrate kinase 847806..849440 Photobacterium profundum SS9 3120589 YP_132395.1 CDS PBPRB0723 NC_006371.1 849597 851765 R signal transduction protein complement(849597..851765) Photobacterium profundum SS9 3120594 YP_132396.1 CDS PBPRB0724 NC_006371.1 852049 852990 D transcriptional regulator 852049..852990 Photobacterium profundum SS9 3120601 YP_132397.1 CDS PBPRB0725 NC_006371.1 853145 854023 D hypothetical protein 853145..854023 Photobacterium profundum SS9 3120605 YP_132398.1 CDS PBPRB0726 NC_006371.1 854179 855723 R transposase complement(854179..855723) Photobacterium profundum SS9 3120606 YP_132399.1 CDS PBPRB0727 NC_006371.1 855833 856180 R ISPpu15 transposase complement(855833..856180) Photobacterium profundum SS9 3120681 YP_132400.1 CDS PBPRB0728 NC_006371.1 856180 856476 R hypothetical protein complement(856180..856476) Photobacterium profundum SS9 3120610 YP_132401.1 CDS PBPRB0729 NC_006371.1 856600 857376 D hypothetical protein 856600..857376 Photobacterium profundum SS9 3120612 YP_132402.1 CDS PBPRB0730 NC_006371.1 857658 857930 D hypothetical protein 857658..857930 Photobacterium profundum SS9 3120615 YP_132403.1 CDS PBPRB0731 NC_006371.1 857848 858828 D hypothetical protein 857848..858828 Photobacterium profundum SS9 3120620 YP_132404.1 CDS PBPRB0732 NC_006371.1 859063 861849 D Zn-dependent peptidase 859063..861849 Photobacterium profundum SS9 3120621 YP_132405.1 CDS PBPRB0733 NC_006371.1 861998 862606 R hypothetical protein complement(861998..862606) Photobacterium profundum SS9 3120624 YP_132406.1 CDS PBPRB0734 NC_006371.1 862779 863558 R hypothetical protein complement(862779..863558) Photobacterium profundum SS9 3120625 YP_132407.1 CDS PBPRB0735 NC_006371.1 864072 864632 D hypothetical protein 864072..864632 Photobacterium profundum SS9 3120880 YP_132408.1 CDS PBPRB0736 NC_006371.1 864761 865162 D hypothetical protein 864761..865162 Photobacterium profundum SS9 3120807 YP_132409.1 CDS PBPRB0737 NC_006371.1 865291 865920 R hypothetical protein complement(865291..865920) Photobacterium profundum SS9 3120628 YP_132410.1 CDS PBPRB0738 NC_006371.1 866173 866814 R in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase subunit YedZ complement(866173..866814) Photobacterium profundum SS9 3120669 YP_132411.1 CDS PBPRB0739 NC_006371.1 866814 867836 R in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY complement(866814..867836) Photobacterium profundum SS9 3120629 YP_132412.1 CDS PBPRB0740 NC_006371.1 868136 868546 D hypothetical protein 868136..868546 Photobacterium profundum SS9 3120634 YP_132413.1 CDS PBPRB0741 NC_006371.1 868610 869080 D hypothetical protein 868610..869080 Photobacterium profundum SS9 3120636 YP_132414.1 CDS PBPRB0742 NC_006371.1 869354 870493 D delta-9 fatty acid desaturase 869354..870493 Photobacterium profundum SS9 3120638 YP_132415.1 CDS PBPRB0743 NC_006371.1 870765 871670 D hypothetical protein 870765..871670 Photobacterium profundum SS9 3120641 YP_132416.1 CDS PBPRB0744 NC_006371.1 871921 872184 R lipoprotein complement(871921..872184) Photobacterium profundum SS9 3120643 YP_132417.1 CDS PBPRB0745 NC_006371.1 872595 873191 R hypothetical protein complement(872595..873191) Photobacterium profundum SS9 3120666 YP_132418.1 CDS PBPRB0746 NC_006371.1 873188 873682 R hypothetical protein complement(873188..873682) Photobacterium profundum SS9 3120649 YP_132419.1 CDS PBPRB0747 NC_006371.1 873864 874832 R hypothetical protein complement(873864..874832) Photobacterium profundum SS9 3120646 YP_132420.1 CDS PBPRB0748 NC_006371.1 875482 876774 R hypothetical protein complement(875482..876774) Photobacterium profundum SS9 3120658 YP_132421.1 CDS PBPRB0749 NC_006371.1 876780 877454 R two-component response regulator complement(876780..877454) Photobacterium profundum SS9 3120661 YP_132422.1 CDS PBPRB0750 NC_006371.1 877611 878765 D glycosyl transferase 877611..878765 Photobacterium profundum SS9 3120662 YP_132423.1 CDS PBPRB0751 NC_006371.1 878765 880216 D hypothetical protein 878765..880216 Photobacterium profundum SS9 3120451 YP_132424.1 CDS PBPRB0752 NC_006371.1 880450 880701 D hypothetical protein 880450..880701 Photobacterium profundum SS9 3120664 YP_132425.1 CDS PBPRB0753 NC_006371.1 880983 881381 D hypothetical protein 880983..881381 Photobacterium profundum SS9 3120671 YP_132426.1 CDS PBPRB0754 NC_006371.1 881655 881906 R hypothetical protein complement(881655..881906) Photobacterium profundum SS9 3120675 YP_132427.1 CDS PBPRB0755 NC_006371.1 882404 882667 D hypothetical protein 882404..882667 Photobacterium profundum SS9 3120677 YP_132428.1 CDS PBPRB0756 NC_006371.1 882846 884126 D hypothetical protein 882846..884126 Photobacterium profundum SS9 3120684 YP_132429.1 CDS PBPRB0757 NC_006371.1 884899 887034 R sensor histidine kinase complement(884899..887034) Photobacterium profundum SS9 3120686 YP_132430.1 CDS PBPRB0758 NC_006371.1 887161 887949 R DNA-binding response regulator complement(887161..887949) Photobacterium profundum SS9 3120688 YP_132431.1 CDS PBPRB0759 NC_006371.1 888106 888864 D OmpA family protein 888106..888864 Photobacterium profundum SS9 3120694 YP_132432.1 CDS PBPRB0760 NC_006371.1 888978 889319 R hypothetical protein complement(888978..889319) Photobacterium profundum SS9 3120697 YP_132433.1 CDS PBPRB0761 NC_006371.1 889480 890004 R chemotaxis protein complement(889480..890004) Photobacterium profundum SS9 3120701 YP_132434.1 CDS PBPRB0762 NC_006371.1 890054 890443 R chemotaxis protein complement(890054..890443) Photobacterium profundum SS9 3120704 YP_132435.1 CDS PBPRB0763 NC_006371.1 890820 895004 D formate dehydrogenase, alphasubunit 890820..895004 Photobacterium profundum SS9 3120724 YP_132436.1 CDS PBPRB0764 NC_006371.1 895506 895877 D hypothetical protein 895506..895877 Photobacterium profundum SS9 3120712 YP_132437.1 CDS PBPRB0765 NC_006371.1 895960 897156 R N-acetylglucosamine-6-phosphate deacetylase complement(895960..897156) Photobacterium profundum SS9 3120719 YP_132438.1 CDS PBPRB0766 NC_006371.1 897429 898316 R LysR family transcriptional regulator complement(897429..898316) Photobacterium profundum SS9 3120723 YP_132439.1 CDS PBPRB0767 NC_006371.1 898404 899813 D multidrug transporter 898404..899813 Photobacterium profundum SS9 3120725 YP_132440.1 CDS PBPRB0768 NC_006371.1 899992 900777 D hypothetical protein 899992..900777 Photobacterium profundum SS9 3120727 YP_132441.1 CDS PBPRB0769 NC_006371.1 900888 901427 R isochorismatase family protein complement(900888..901427) Photobacterium profundum SS9 3120728 YP_132442.1 CDS PBPRB0770 NC_006371.1 901708 902655 D hypothetical protein 901708..902655 Photobacterium profundum SS9 3120729 YP_132443.1 CDS PBPRB0771 NC_006371.1 902838 903947 D NAD/NADP octopine/nopalinedehydrogenas 902838..903947 Photobacterium profundum SS9 3120731 YP_132444.1 CDS PBPRB0772 NC_006371.1 903975 905417 D hypothetical protein 903975..905417 Photobacterium profundum SS9 3120734 YP_132445.1 CDS PBPRB0773 NC_006371.1 905558 906955 R hypothetical protein complement(905558..906955) Photobacterium profundum SS9 3120736 YP_132446.1 CDS PBPRB0774 NC_006371.1 907078 907728 R phosphonate ABC transporter ATP-binding protein complement(907078..907728) Photobacterium profundum SS9 3120737 YP_132447.1 CDS PBPRB0775 NC_006371.1 907728 908576 R phosphate/phosphonate ABC transporter periplasmic protein complement(907728..908576) Photobacterium profundum SS9 3120740 YP_132448.1 CDS PBPRB0776 NC_006371.1 908734 909279 D adenylate cyclase CyaB 908734..909279 Photobacterium profundum SS9 3120741 YP_132449.1 CDS PBPRB0777 NC_006371.1 909385 910491 R M20 family peptidase complement(909385..910491) Photobacterium profundum SS9 3120743 YP_132450.1 CDS PBPRB0778 NC_006371.1 910634 910966 R hypothetical protein complement(910634..910966) Photobacterium profundum SS9 3120746 YP_132451.1 CDS PBPRB0779 NC_006371.1 911170 911583 D peptidyl-tRNA hydrolase domain protein 911170..911583 Photobacterium profundum SS9 3120749 YP_132452.1 CDS PBPRB0780 NC_006371.1 911788 912117 D hypothetical protein 911788..912117 Photobacterium profundum SS9 3120751 YP_132453.1 CDS PBPRB0781 NC_006371.1 912337 913221 D catalyzes the conversion of N-acetyl_L-aspartic acid (NAA) to aspartate and acetate; aspartoacylase 912337..913221 Photobacterium profundum SS9 3120757 YP_132454.1 CDS PBPRB0782 NC_006371.1 913549 913983 D glyoxalase/bleomycin resistance protein/dioxygenase family protein 913549..913983 Photobacterium profundum SS9 3120759 YP_132455.1 CDS PBPRB0783 NC_006371.1 913977 914864 D hypothetical protein 913977..914864 Photobacterium profundum SS9 3120761 YP_132456.1 CDS PBPRB0784 NC_006371.1 914902 915219 R aromatic ring-cleaving dioxygenase complement(914902..915219) Photobacterium profundum SS9 3120762 YP_132457.1 CDS PBPRB0785 NC_006371.1 915372 916700 D hypothetical protein 915372..916700 Photobacterium profundum SS9 3120764 YP_132458.1 CDS PBPRB0786 NC_006371.1 917007 917675 R hypothetical protein complement(917007..917675) Photobacterium profundum SS9 3120767 YP_132459.1 CDS PBPRB0787 NC_006371.1 918258 918770 R hypothetical protein complement(918258..918770) Photobacterium profundum SS9 3120768 YP_132460.1 CDS PBPRB0788 NC_006371.1 918865 919617 R nitroreductase complement(918865..919617) Photobacterium profundum SS9 3120769 YP_132461.1 CDS PBPRB0789 NC_006371.1 919869 920552 D hypothetical protein 919869..920552 Photobacterium profundum SS9 3120770 YP_132462.1 CDS PBPRB0790 NC_006371.1 921013 922713 D ABC transporter periplasmic solute-binding protein 921013..922713 Photobacterium profundum SS9 3120777 YP_132463.1 CDS PBPRB0791 NC_006371.1 922850 924034 R D-alanyl-D-alanine carboxypeptidase complement(922850..924034) Photobacterium profundum SS9 3120783 YP_132464.1 CDS PBPRB0792 NC_006371.1 924124 924582 R hypothetical protein complement(924124..924582) Photobacterium profundum SS9 3120784 YP_132465.1 CDS PBPRB0793 NC_006371.1 924756 926261 D Na+/H+ antiporter 924756..926261 Photobacterium profundum SS9 3120786 YP_132466.1 CDS PBPRB0794 NC_006371.1 926381 927142 D hypothetical protein 926381..927142 Photobacterium profundum SS9 3120787 YP_132467.1 CDS PBPRB0795 NC_006371.1 927198 928205 R threonine aldolase complement(927198..928205) Photobacterium profundum SS9 3120788 YP_132468.1 CDS PBPRB0796 NC_006371.1 928690 928992 D hypothetical protein 928690..928992 Photobacterium profundum SS9 3120789 YP_132469.1 CDS PBPRB0797 NC_006371.1 929232 929582 R hypothetical protein complement(929232..929582) Photobacterium profundum SS9 3120790 YP_132470.1 CDS PBPRB0798 NC_006371.1 929824 930198 D hypothetical protein 929824..930198 Photobacterium profundum SS9 3120791 YP_132471.1 CDS PBPRB0799 NC_006371.1 930315 931082 D hypothetical protein 930315..931082 Photobacterium profundum SS9 3120796 YP_132472.1 CDS PBPRB0800 NC_006371.1 931436 932275 D oxidoreductase 931436..932275 Photobacterium profundum SS9 3120798 YP_132473.1 CDS PBPRB0801 NC_006371.1 932372 932995 R cytosine deaminase complement(932372..932995) Photobacterium profundum SS9 3120799 YP_132474.1 CDS PBPRB0802 NC_006371.1 932974 933777 R cytosine deaminase complement(932974..933777) Photobacterium profundum SS9 3120802 YP_132475.1 CDS PBPRB0803 NC_006371.1 933983 935320 R MATE efflux family protein complement(933983..935320) Photobacterium profundum SS9 3120804 YP_132476.1 CDS PBPRB0804 NC_006371.1 935816 936514 D hypothetical protein 935816..936514 Photobacterium profundum SS9 3120810 YP_132477.1 CDS PBPRB0805 NC_006371.1 936521 936778 R hypothetical protein complement(936521..936778) Photobacterium profundum SS9 3120815 YP_132478.1 CDS PBPRB0806 NC_006371.1 936961 937224 R hypothetical protein complement(936961..937224) Photobacterium profundum SS9 3120820 YP_132479.1 CDS PBPRB0807 NC_006371.1 937334 938599 D maturase 937334..938599 Photobacterium profundum SS9 3120821 YP_132480.1 CDS PBPRB0808 NC_006371.1 938719 939396 R acyl dehydratase complement(938719..939396) Photobacterium profundum SS9 3120824 YP_132481.1 CDS PBPRB0809 NC_006371.1 940234 941505 D beta-lactamase-like protein 940234..941505 Photobacterium profundum SS9 3120825 YP_132482.1 CDS PBPRB0810 NC_006371.1 941590 941871 D hypothetical protein 941590..941871 Photobacterium profundum SS9 3120826 YP_132483.1 CDS PBPRB0811 NC_006371.1 942078 942374 D hypothetical protein 942078..942374 Photobacterium profundum SS9 3120827 YP_132484.1 CDS PBPRB0812 NC_006371.1 942445 942822 D hypothetical protein 942445..942822 Photobacterium profundum SS9 3120834 YP_132485.1 CDS PBPRB0813 NC_006371.1 943265 943810 R hypothetical protein complement(943265..943810) Photobacterium profundum SS9 3120836 YP_132486.1 CDS PBPRB0814 NC_006371.1 944017 945297 D hypothetical protein 944017..945297 Photobacterium profundum SS9 3120840 YP_132487.1 CDS PBPRB0815 NC_006371.1 946823 948094 D Tn5 trasposase 946823..948094 Photobacterium profundum SS9 3120841 YP_132488.1 CDS PBPRB0816 NC_006371.1 948366 950012 D ATPase of the ABC class 948366..950012 Photobacterium profundum SS9 3120843 YP_132489.1 CDS PBPRB0817 NC_006371.1 950189 951025 D hypothetical protein 950189..951025 Photobacterium profundum SS9 3120848 YP_132490.1 CDS PBPRB0818 NC_006371.1 951167 951454 D hypothetical protein 951167..951454 Photobacterium profundum SS9 3120849 YP_132491.1 CDS PBPRB0819 NC_006371.1 951506 951892 D hypothetical protein 951506..951892 Photobacterium profundum SS9 3120850 YP_132492.1 CDS PBPRB0820 NC_006371.1 951923 952186 R hypothetical protein complement(951923..952186) Photobacterium profundum SS9 3120851 YP_132493.1 CDS PBPRB0821 NC_006371.1 952170 953366 R hypothetical protein complement(952170..953366) Photobacterium profundum SS9 3120855 YP_132494.1 CDS PBPRB0822 NC_006371.1 953577 953825 R hypothetical protein complement(953577..953825) Photobacterium profundum SS9 3120856 YP_132495.1 CDS PBPRB0823 NC_006371.1 953916 954407 D hypothetical protein 953916..954407 Photobacterium profundum SS9 3120738 YP_132496.1 CDS PBPRB0824 NC_006371.1 954437 954937 D thioredoxin 954437..954937 Photobacterium profundum SS9 3120857 YP_132497.1 CDS PBPRB0825 NC_006371.1 955138 956052 D hypothetical protein 955138..956052 Photobacterium profundum SS9 3120860 YP_132498.1 CDS PBPRB0826 NC_006371.1 956079 957269 D hypothetical protein 956079..957269 Photobacterium profundum SS9 3120862 YP_132499.1 CDS PBPRB0827 NC_006371.1 958316 959926 D hypothetical protein 958316..959926 Photobacterium profundum SS9 3120864 YP_132500.1 CDS PBPRB0828 NC_006371.1 960075 961079 R hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase complement(960075..961079) Photobacterium profundum SS9 3120865 YP_132501.1 CDS PBPRB0829 NC_006371.1 961471 961956 D hypothetical protein 961471..961956 Photobacterium profundum SS9 3120866 YP_132502.1 CDS PBPRB0830 NC_006371.1 962138 962491 R hypothetical protein complement(962138..962491) Photobacterium profundum SS9 3120869 YP_132503.1 CDS PBPRB0831 NC_006371.1 963241 964278 D IS630 family transposase 963241..964278 Photobacterium profundum SS9 3120873 YP_132504.1 CDS PBPRB0832 NC_006371.1 964303 965340 D transposase 964303..965340 Photobacterium profundum SS9 3120875 YP_132505.1 CDS PBPRB0833 NC_006371.1 965888 966406 R hypothetical protein complement(965888..966406) Photobacterium profundum SS9 3120879 YP_132506.1 CDS PBPRB0834 NC_006371.1 966910 967257 D transposase 966910..967257 Photobacterium profundum SS9 3120883 YP_132507.1 CDS PBPRB0835 NC_006371.1 967367 968911 D hypothetical protein 967367..968911 Photobacterium profundum SS9 3120885 YP_132508.1 CDS PBPRB0836 NC_006371.1 968930 969268 R transposase complement(968930..969268) Photobacterium profundum SS9 3120888 YP_132509.1 CDS PBPRB0837 NC_006371.1 969243 969785 R transposase complement(969243..969785) Photobacterium profundum SS9 3120893 YP_132510.1 CDS PBPRB0838 NC_006371.1 969795 971405 R hypothetical protein complement(969795..971405) Photobacterium profundum SS9 3120894 YP_132511.1 CDS PBPRB0839 NC_006371.1 971540 972628 D transposase 971540..972628 Photobacterium profundum SS9 3120895 YP_132512.1 CDS PBPRB0840 NC_006371.1 972715 973176 D hypothetical protein 972715..973176 Photobacterium profundum SS9 3120896 YP_132513.1 CDS PBPRB0841 NC_006371.1 973130 974167 R transposase complement(973130..974167) Photobacterium profundum SS9 3120897 YP_132514.1 CDS PBPRB0842 NC_006371.1 974469 974711 D hypothetical protein 974469..974711 Photobacterium profundum SS9 3120904 YP_132515.1 CDS PBPRB0843 NC_006371.1 974828 976165 R sensor histidine kinase complement(974828..976165) Photobacterium profundum SS9 3121122 YP_132516.1 CDS PBPRB0844 NC_006371.1 976217 976816 R DNA-binding response regulator complement(976217..976816) Photobacterium profundum SS9 3120908 YP_132517.1 CDS PBPRB0845 NC_006371.1 976813 977163 R hypothetical protein complement(976813..977163) Photobacterium profundum SS9 3120909 YP_132518.1 CDS PBPRB0846 NC_006371.1 977458 979593 D NosR, regulator of nitric oxide reductase transcription 977458..979593 Photobacterium profundum SS9 3120916 YP_132519.1 CDS PBPRB0847 NC_006371.1 979715 981619 D reduces nitrous oxide to nitrogen; nitrous-oxide reductase 979715..981619 Photobacterium profundum SS9 3120917 YP_132520.1 CDS PBPRB0848 NC_006371.1 981804 983123 D NosD, nitrous oxidase accessory protein 981804..983123 Photobacterium profundum SS9 3120918 YP_132521.1 CDS PBPRB0849 NC_006371.1 983077 984126 D ABC transporter 983077..984126 Photobacterium profundum SS9 3120919 YP_132522.1 CDS PBPRB0850 NC_006371.1 984123 984941 D nitrous oxide metabolic protein 984123..984941 Photobacterium profundum SS9 3120819 YP_132523.1 CDS PBPRB0851 NC_006371.1 985018 985518 D protein disulfide isomerase 985018..985518 Photobacterium profundum SS9 3120921 YP_132524.1 CDS PBPRB0852 NC_006371.1 985620 985988 D peptidyl-prolyl cis-trans isomerase C 985620..985988 Photobacterium profundum SS9 3120922 YP_132525.1 CDS PBPRB0853 NC_006371.1 986067 986309 R hypothetical protein complement(986067..986309) Photobacterium profundum SS9 3120924 YP_132526.1 CDS PBPRB0854 NC_006371.1 986580 987470 D transcriptional regulator 986580..987470 Photobacterium profundum SS9 3120925 YP_132527.1 CDS PBPRB0855 NC_006371.1 987473 987751 R hypothetical protein complement(987473..987751) Photobacterium profundum SS9 3120926 YP_132528.1 CDS PBPRB0856 NC_006371.1 987857 988348 R hypothetical protein complement(987857..988348) Photobacterium profundum SS9 3120928 YP_132529.1 CDS PBPRB0857 NC_006371.1 988369 989670 R hypothetical protein complement(988369..989670) Photobacterium profundum SS9 3120931 YP_132530.1 CDS PBPRB0858 NC_006371.1 989943 990482 R hypothetical protein complement(989943..990482) Photobacterium profundum SS9 3120934 YP_132531.1 CDS PBPRB0859 NC_006371.1 990632 991369 R amidotransferase complement(990632..991369) Photobacterium profundum SS9 3120935 YP_132532.1 CDS PBPRB0860 NC_006371.1 991434 992591 R methanol dehydrogenase complement(991434..992591) Photobacterium profundum SS9 3120939 YP_132533.1 CDS PBPRB0861 NC_006371.1 992646 994055 R aldehyde dehydrogenase complement(992646..994055) Photobacterium profundum SS9 3120940 YP_132534.1 CDS PBPRB0862 NC_006371.1 994113 995480 R hypothetical protein complement(994113..995480) Photobacterium profundum SS9 3120903 YP_132535.1 CDS PBPRB0863 NC_006371.1 995801 996619 D hypothetical protein 995801..996619 Photobacterium profundum SS9 3120941 YP_132536.1 CDS PBPRB0864 NC_006371.1 996653 997651 D hypothetical protein 996653..997651 Photobacterium profundum SS9 3120739 YP_132537.1 CDS PBPRB0865 NC_006371.1 997777 998481 D hypothetical protein 997777..998481 Photobacterium profundum SS9 3120944 YP_132538.1 CDS PBPRB0866 NC_006371.1 998701 1000563 D hypothetical protein 998701..1000563 Photobacterium profundum SS9 3121045 YP_132539.1 CDS PBPRB0867 NC_006371.1 1000572 1000925 R hypothetical protein complement(1000572..1000925) Photobacterium profundum SS9 3120945 YP_132540.1 CDS PBPRB0868 NC_006371.1 1001024 1002220 R hypothetical protein complement(1001024..1002220) Photobacterium profundum SS9 3120946 YP_132541.1 CDS PBPRB0869 NC_006371.1 1002560 1002982 R hypothetical protein complement(1002560..1002982) Photobacterium profundum SS9 3120951 YP_132542.1 CDS PBPRB0870 NC_006371.1 1003080 1004015 R siroheme synthase component enzyme complement(1003080..1004015) Photobacterium profundum SS9 3120952 YP_132543.1 CDS PBPRB0871 NC_006371.1 1004188 1004919 D hypothetical protein 1004188..1004919 Photobacterium profundum SS9 3120953 YP_132544.1 CDS PBPRB0872 NC_006371.1 1004916 1005968 D transposase 1004916..1005968 Photobacterium profundum SS9 3120956 YP_132545.1 CDS PBPRB0873 NC_006371.1 1006424 1007548 D multidrug efflux membrane fusion protein 1006424..1007548 Photobacterium profundum SS9 3120958 YP_132546.1 CDS PBPRB0874 NC_006371.1 1007548 1010703 D acriflavin resistence protein 1007548..1010703 Photobacterium profundum SS9 3120962 YP_132547.1 CDS PBPRB0875 NC_006371.1 1010879 1011862 R hypothetical protein complement(1010879..1011862) Photobacterium profundum SS9 3120964 YP_132548.1 CDS PBPRB0876 NC_006371.1 1012228 1013052 D hypothetical protein 1012228..1013052 Photobacterium profundum SS9 3120965 YP_132549.1 CDS PBPRB0877 NC_006371.1 1013094 1013744 D hypothetical protein 1013094..1013744 Photobacterium profundum SS9 3120966 YP_132550.1 CDS PBPRB0878 NC_006371.1 1013830 1014819 R hypothetical protein complement(1013830..1014819) Photobacterium profundum SS9 3120971 YP_132551.1 CDS PBPRB0879 NC_006371.1 1015210 1015707 R acetyltransferase complement(1015210..1015707) Photobacterium profundum SS9 3120973 YP_132552.1 CDS PBPRB0880 NC_006371.1 1015707 1016054 R hypothetical protein complement(1015707..1016054) Photobacterium profundum SS9 3120975 YP_132553.1 CDS PBPRB0881 NC_006371.1 1016378 1017943 D hypothetical protein 1016378..1017943 Photobacterium profundum SS9 3120976 YP_132554.1 CDS PBPRB0882 NC_006371.1 1018017 1018862 D rhodanese-like sulfurtransferase 1018017..1018862 Photobacterium profundum SS9 3120977 YP_132555.1 CDS PBPRB0883 NC_006371.1 1019226 1020083 R ABC transporter periplasmic substrate-binding protein complement(1019226..1020083) Photobacterium profundum SS9 3120979 YP_132556.1 CDS PBPRB0884 NC_006371.1 1020184 1020771 R hypothetical protein complement(1020184..1020771) Photobacterium profundum SS9 3120985 YP_132557.1 CDS PBPRB0885 NC_006371.1 1020971 1022251 D hypothetical protein 1020971..1022251 Photobacterium profundum SS9 3120989 YP_132558.1 CDS PBPRB0886 NC_006371.1 1022951 1024516 D hypothetical protein 1022951..1024516 Photobacterium profundum SS9 3120991 YP_132559.1 CDS PBPRB0887 NC_006371.1 1025054 1025395 D hypothetical protein 1025054..1025395 Photobacterium profundum SS9 3120995 YP_132560.1 CDS PBPRB0888 NC_006371.1 1025633 1026223 D hypothetical protein 1025633..1026223 Photobacterium profundum SS9 3120997 YP_132561.1 CDS PBPRB0889 NC_006371.1 1026914 1028032 R hypothetical protein complement(1026914..1028032) Photobacterium profundum SS9 3120998 YP_132562.1 CDS PBPRB0890 NC_006371.1 1028295 1029764 D hypothetical protein 1028295..1029764 Photobacterium profundum SS9 3121006 YP_132563.1 CDS PBPRB0891 NC_006371.1 1029814 1030581 D stomatin-like protein 1029814..1030581 Photobacterium profundum SS9 3121010 YP_132564.1 CDS PBPRB0892 NC_006371.1 1030782 1031798 D SAM-dependent methyltransferase 1030782..1031798 Photobacterium profundum SS9 3121017 YP_132565.1 CDS PBPRB0893 NC_006371.1 1031971 1032543 D hypothetical protein 1031971..1032543 Photobacterium profundum SS9 3121024 YP_132566.1 CDS PBPRB0894 NC_006371.1 1032613 1034259 R ATP-dependent endonuclease complement(1032613..1034259) Photobacterium profundum SS9 3121026 YP_132567.1 CDS PBPRB0895 NC_006371.1 1034438 1034833 D hypothetical protein 1034438..1034833 Photobacterium profundum SS9 3121031 YP_132568.1 CDS PBPRB0896 NC_006371.1 1035002 1035859 R hypothetical protein complement(1035002..1035859) Photobacterium profundum SS9 3121038 YP_132569.1 CDS PBPRB0897 NC_006371.1 1036233 1037993 D 5`-nucleotidase 1036233..1037993 Photobacterium profundum SS9 3120809 YP_132570.1 CDS PBPRB0898 NC_006371.1 1038628 1039314 R 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(1038628..1039314) Photobacterium profundum SS9 3121042 YP_132571.1 CDS PBPRB0899 NC_006371.1 1039742 1040683 R hypothetical protein complement(1039742..1040683) Photobacterium profundum SS9 3121044 YP_132572.1 CDS PBPRB0900 NC_006371.1 1040963 1041154 D hypothetical protein 1040963..1041154 Photobacterium profundum SS9 3121046 YP_132573.1 CDS PBPRB0901 NC_006371.1 1041418 1041681 D hypothetical protein 1041418..1041681 Photobacterium profundum SS9 3121053 YP_132574.1 CDS pntA NC_006371.1 1042127 1043683 D forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 1042127..1043683 Photobacterium profundum SS9 3121054 YP_132575.1 CDS pntB NC_006371.1 1043694 1045070 D catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 1043694..1045070 Photobacterium profundum SS9 3121055 YP_132576.1 CDS PBPRB0904 NC_006371.1 1045218 1046663 D sensor histidine kinase 1045218..1046663 Photobacterium profundum SS9 3121056 YP_132577.1 CDS PBPRB0905 NC_006371.1 1046599 1047297 D transcriptional regulator 1046599..1047297 Photobacterium profundum SS9 3121057 YP_132578.1 CDS PBPRB0906 NC_006371.1 1047327 1048196 D hypothetical protein 1047327..1048196 Photobacterium profundum SS9 3121060 YP_132579.1 CDS PBPRB0907 NC_006371.1 1048366 1049571 D hypothetical protein 1048366..1049571 Photobacterium profundum SS9 3121062 YP_132580.1 CDS PBPRB0908 NC_006371.1 1049603 1049932 R hypothetical protein complement(1049603..1049932) Photobacterium profundum SS9 3121068 YP_132581.1 CDS PBPRB0909 NC_006371.1 1050025 1050534 D hypothetical protein 1050025..1050534 Photobacterium profundum SS9 3121072 YP_132582.1 CDS PBPRB0910 NC_006371.1 1050745 1052130 D transposase 1050745..1052130 Photobacterium profundum SS9 3121075 YP_132583.1 CDS nadE NC_006371.1 1052205 1053041 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(1052205..1053041) Photobacterium profundum SS9 3121076 YP_132584.1 CDS PBPRB0912 NC_006371.1 1053255 1053779 D catalyzes the formation of deamido-NAD(+) from nicotinate ribonucleotide and ATP; nicotinic acid mononucleotide adenylyltransferase 1053255..1053779 Photobacterium profundum SS9 3121080 YP_132585.1 CDS PBPRB0913 NC_006371.1 1053804 1054340 D hypothetical protein 1053804..1054340 Photobacterium profundum SS9 3121081 YP_132586.1 CDS PBPRB0914 NC_006371.1 1054381 1055058 R hypothetical protein complement(1054381..1055058) Photobacterium profundum SS9 3121084 YP_132587.1 CDS PBPRB0915 NC_006371.1 1055331 1056443 D hypothetical protein 1055331..1056443 Photobacterium profundum SS9 3121088 YP_132588.1 CDS PBPRB0916 NC_006371.1 1056553 1057179 R hypothetical protein complement(1056553..1057179) Photobacterium profundum SS9 3121089 YP_132589.1 CDS PBPRB0917 NC_006371.1 1057416 1058612 R hypothetical protein complement(1057416..1058612) Photobacterium profundum SS9 3121092 YP_132590.1 CDS PBPRB0918 NC_006371.1 1058846 1059415 D manganese transporter 1058846..1059415 Photobacterium profundum SS9 3121097 YP_132591.1 CDS PBPRB0919 NC_006371.1 1059828 1060142 R hypothetical protein complement(1059828..1060142) Photobacterium profundum SS9 3121099 YP_132592.1 CDS PBPRB0920 NC_006371.1 1060390 1061229 R hypothetical protein complement(1060390..1061229) Photobacterium profundum SS9 3121100 YP_132593.1 CDS PBPRB0921 NC_006371.1 1061492 1062385 D transcriptional regulator 1061492..1062385 Photobacterium profundum SS9 3121101 YP_132594.1 CDS PBPRB0922 NC_006371.1 1062533 1065262 R acetyltransferase complement(1062533..1065262) Photobacterium profundum SS9 3121102 YP_132595.1 CDS PBPRB0923 NC_006371.1 1065768 1066331 R transposase complement(1065768..1066331) Photobacterium profundum SS9 3121103 YP_132596.1 CDS PBPRB0924 NC_006371.1 1066333 1066803 R transposase complement(1066333..1066803) Photobacterium profundum SS9 3121111 YP_132597.1 CDS PBPRB0925 NC_006371.1 1067237 1067776 D hypothetical protein 1067237..1067776 Photobacterium profundum SS9 3121113 YP_132598.1 CDS PBPRB0926 NC_006371.1 1067863 1068426 D acetyltransferase 1067863..1068426 Photobacterium profundum SS9 3121114 YP_132599.1 CDS ddl NC_006371.1 1068648 1069640 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 1068648..1069640 Photobacterium profundum SS9 3121115 YP_132600.1 CDS PBPRB0928 NC_006371.1 1070087 1070722 D cell filamentation protein 1070087..1070722 Photobacterium profundum SS9 3121116 YP_132601.1 CDS PBPRB0929 NC_006371.1 1070762 1071742 R hypothetical protein complement(1070762..1071742) Photobacterium profundum SS9 3121118 YP_132602.1 CDS PBPRB0930 NC_006371.1 1071914 1072348 D hypothetical protein 1071914..1072348 Photobacterium profundum SS9 3121120 YP_132603.1 CDS PBPRB0931 NC_006371.1 1072469 1072981 R hypothetical protein complement(1072469..1072981) Photobacterium profundum SS9 3121126 YP_132604.1 CDS PBPRB0932 NC_006371.1 1073093 1073698 R hypothetical protein complement(1073093..1073698) Photobacterium profundum SS9 3121127 YP_132605.1 CDS PBPRB0933 NC_006371.1 1073803 1074141 D involved in start site selection during the initiation of translation; translation initiation factor Sui1 1073803..1074141 Photobacterium profundum SS9 3121130 YP_132606.1 CDS PBPRB0934 NC_006371.1 1074738 1075187 D hypothetical protein 1074738..1075187 Photobacterium profundum SS9 3121141 YP_132607.1 CDS PBPRB0935 NC_006371.1 1075339 1076031 D hypothetical protein 1075339..1076031 Photobacterium profundum SS9 3121142 YP_132608.1 CDS PBPRB0936 NC_006371.1 1076062 1077018 R hypothetical protein complement(1076062..1077018) Photobacterium profundum SS9 3121144 YP_132609.1 CDS PBPRB0937 NC_006371.1 1077627 1078229 R hypothetical protein complement(1077627..1078229) Photobacterium profundum SS9 3121145 YP_132610.1 CDS PBPRB0938 NC_006371.1 1078232 1078807 R hypothetical protein complement(1078232..1078807) Photobacterium profundum SS9 3121147 YP_132611.1 CDS PBPRB0939 NC_006371.1 1078822 1079511 R hypothetical protein complement(1078822..1079511) Photobacterium profundum SS9 3121149 YP_132612.1 CDS PBPRB0940 NC_006371.1 1079529 1080041 R hypothetical protein complement(1079529..1080041) Photobacterium profundum SS9 3121154 YP_132613.1 CDS PBPRB0941 NC_006371.1 1080179 1080649 D transposase 1080179..1080649 Photobacterium profundum SS9 3121155 YP_132614.1 CDS PBPRB0942 NC_006371.1 1080694 1081215 D transposase 1080694..1081215 Photobacterium profundum SS9 3121157 YP_132615.1 CDS PBPRB0943 NC_006371.1 1081216 1081566 R hypothetical protein complement(1081216..1081566) Photobacterium profundum SS9 3120689 YP_132616.1 CDS PBPRB0944 NC_006371.1 1081922 1082194 R hypothetical protein complement(1081922..1082194) Photobacterium profundum SS9 3121158 YP_132617.1 CDS PBPRB0945 NC_006371.1 1082204 1083037 R outer membrane receptor protein complement(1082204..1083037) Photobacterium profundum SS9 3121166 YP_132618.1 CDS PBPRB0946 NC_006371.1 1083575 1083985 R hypothetical protein complement(1083575..1083985) Photobacterium profundum SS9 3121167 YP_132619.1 CDS PBPRB0947 NC_006371.1 1084103 1084768 R hypothetical protein complement(1084103..1084768) Photobacterium profundum SS9 3121171 YP_132620.1 CDS PBPRB0948 NC_006371.1 1084765 1085238 R hypothetical protein complement(1084765..1085238) Photobacterium profundum SS9 3121172 YP_132621.1 CDS PBPRB0949 NC_006371.1 1085263 1085754 R hypothetical protein complement(1085263..1085754) Photobacterium profundum SS9 3121174 YP_132622.1 CDS PBPRB0950 NC_006371.1 1085938 1087659 R hypothetical protein complement(1085938..1087659) Photobacterium profundum SS9 3121176 YP_132623.1 CDS PBPRB0951 NC_006371.1 1087807 1088097 R hypothetical protein complement(1087807..1088097) Photobacterium profundum SS9 3121177 YP_132624.1 CDS PBPRB0952 NC_006371.1 1088412 1088675 D hypothetical protein 1088412..1088675 Photobacterium profundum SS9 3121178 YP_132625.1 CDS PBPRB0953 NC_006371.1 1088820 1089176 D hypothetical protein 1088820..1089176 Photobacterium profundum SS9 3121180 YP_132626.1 CDS PBPRB0954 NC_006371.1 1089325 1089600 D hypothetical protein 1089325..1089600 Photobacterium profundum SS9 3121201 YP_132627.1 CDS PBPRB0955 NC_006371.1 1090380 1090652 D hypothetical protein 1090380..1090652 Photobacterium profundum SS9 3121185 YP_132628.1 CDS PBPRB0956 NC_006371.1 1090609 1090908 D hypothetical protein 1090609..1090908 Photobacterium profundum SS9 3121189 YP_132629.1 CDS PBPRB0957 NC_006371.1 1091550 1092206 D hypothetical protein 1091550..1092206 Photobacterium profundum SS9 3121349 YP_132630.1 CDS PBPRB0958 NC_006371.1 1092382 1092777 D hypothetical protein 1092382..1092777 Photobacterium profundum SS9 3121190 YP_132631.1 CDS PBPRB0959 NC_006371.1 1093121 1093444 R hypothetical protein complement(1093121..1093444) Photobacterium profundum SS9 3121192 YP_132632.1 CDS PBPRB0960 NC_006371.1 1093648 1094523 D DNA-directed RNA polymerase sigma factor 1093648..1094523 Photobacterium profundum SS9 3121195 YP_132633.1 CDS PBPRB0961 NC_006371.1 1094760 1095296 D hypothetical protein 1094760..1095296 Photobacterium profundum SS9 3121196 YP_132634.1 CDS PBPRB0962 NC_006371.1 1095344 1095640 R hypothetical protein complement(1095344..1095640) Photobacterium profundum SS9 3121205 YP_132635.1 CDS PBPRB0963 NC_006371.1 1095856 1097022 R chromate resistance protein-like protein complement(1095856..1097022) Photobacterium profundum SS9 3121209 YP_132636.1 CDS PBPRB0964 NC_006371.1 1097501 1098427 D LysR family transcriptional regulator 1097501..1098427 Photobacterium profundum SS9 3121210 YP_132637.1 CDS PBPRB0965 NC_006371.1 1098725 1100005 D hypothetical protein 1098725..1100005 Photobacterium profundum SS9 3121212 YP_132638.1 CDS PBPRB0966 NC_006371.1 1099993 1100409 R manganese transporter complement(1099993..1100409) Photobacterium profundum SS9 3121214 YP_132639.1 CDS PBPRB0967 NC_006371.1 1101051 1104347 D hypothetical protein 1101051..1104347 Photobacterium profundum SS9 3121215 YP_132640.1 CDS PBPRB0968 NC_006371.1 1104397 1104606 D hypothetical protein 1104397..1104606 Photobacterium profundum SS9 3121218 YP_132641.1 CDS PBPRB0969 NC_006371.1 1104607 1104948 D hypothetical protein 1104607..1104948 Photobacterium profundum SS9 3121219 YP_132642.1 CDS PBPRB0970 NC_006371.1 1105123 1106103 D hypothetical protein 1105123..1106103 Photobacterium profundum SS9 3121222 YP_132643.1 CDS PBPRB0971 NC_006371.1 1106356 1106637 D hypothetical protein 1106356..1106637 Photobacterium profundum SS9 3121223 YP_132644.1 CDS PBPRB0972 NC_006371.1 1106703 1108007 R hypothetical protein complement(1106703..1108007) Photobacterium profundum SS9 3121225 YP_132645.1 CDS PBPRB0973 NC_006371.1 1108007 1108450 R hypothetical protein complement(1108007..1108450) Photobacterium profundum SS9 3121230 YP_132646.1 CDS PBPRB0974 NC_006371.1 1108664 1109080 D hypothetical protein 1108664..1109080 Photobacterium profundum SS9 3121231 YP_132647.1 CDS PBPRB0975 NC_006371.1 1109221 1109790 R hypothetical protein complement(1109221..1109790) Photobacterium profundum SS9 3121235 YP_132648.1 CDS PBPRB0976 NC_006371.1 1109803 1111281 R hypothetical protein complement(1109803..1111281) Photobacterium profundum SS9 3121244 YP_132649.1 CDS PBPRB0977 NC_006371.1 1111297 1113615 R hypothetical protein complement(1111297..1113615) Photobacterium profundum SS9 3121246 YP_132650.1 CDS PBPRB0978 NC_006371.1 1113627 1115744 R outer membrane receptor protein complement(1113627..1115744) Photobacterium profundum SS9 3121248 YP_132651.1 CDS PBPRB0979 NC_006371.1 1115762 1117771 R oligopeptidase B complement(1115762..1117771) Photobacterium profundum SS9 3121249 YP_132652.1 CDS PBPRB0980 NC_006371.1 1117985 1119394 R hypothetical protein complement(1117985..1119394) Photobacterium profundum SS9 3121250 YP_132653.1 CDS PBPRB0981 NC_006371.1 1119565 1120533 D hypothetical protein 1119565..1120533 Photobacterium profundum SS9 3121255 YP_132654.1 CDS PBPRB0982 NC_006371.1 1120665 1122089 R ATP-dependent RNA helicase complement(1120665..1122089) Photobacterium profundum SS9 3121259 YP_132655.1 CDS PBPRB0983 NC_006371.1 1122282 1123298 R UDP-glucose 4-epimerase complement(1122282..1123298) Photobacterium profundum SS9 3121260 YP_132656.1 CDS PBPRB0984 NC_006371.1 1123910 1124830 D hypothetical protein 1123910..1124830 Photobacterium profundum SS9 3121261 YP_132657.1 CDS PBPRB0985 NC_006371.1 1124958 1126007 D hypothetical protein 1124958..1126007 Photobacterium profundum SS9 3121263 YP_132658.1 CDS PBPRB0986 NC_006371.1 1126143 1126682 D MutT/NUDIX family protein 1126143..1126682 Photobacterium profundum SS9 3121269 YP_132659.1 CDS PBPRB0987 NC_006371.1 1126941 1127513 D hypothetical protein 1126941..1127513 Photobacterium profundum SS9 3121270 YP_132660.1 CDS PBPRB0988 NC_006371.1 1127628 1128179 R hypothetical protein complement(1127628..1128179) Photobacterium profundum SS9 3121272 YP_132661.1 CDS PBPRB0989 NC_006371.1 1128405 1129970 R hypothetical protein complement(1128405..1129970) Photobacterium profundum SS9 3121276 YP_132662.1 CDS PBPRB0990 NC_006371.1 1130137 1131237 D hypothetical protein 1130137..1131237 Photobacterium profundum SS9 3121279 YP_132663.1 CDS PBPRB0991 NC_006371.1 1131532 1133010 R catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase complement(1131532..1133010) Photobacterium profundum SS9 3121287 YP_132664.1 CDS PBPRB0992 NC_006371.1 1134046 1134381 R hypothetical protein complement(1134046..1134381) Photobacterium profundum SS9 3121290 YP_132665.1 CDS PBPRB0993 NC_006371.1 1134385 1134795 R hypothetical protein complement(1134385..1134795) Photobacterium profundum SS9 3121293 YP_132666.1 CDS PBPRB0994 NC_006371.1 1135943 1136563 R hypothetical protein complement(1135943..1136563) Photobacterium profundum SS9 3121300 YP_132667.1 CDS PBPRB0995 NC_006371.1 1136636 1137214 R cobinamide kinase complement(1136636..1137214) Photobacterium profundum SS9 3121301 YP_132668.1 CDS PBPRB0996 NC_006371.1 1137452 1138273 D hypothetical protein 1137452..1138273 Photobacterium profundum SS9 3121303 YP_132669.1 CDS PBPRB0997 NC_006371.1 1138315 1138761 D hypothetical protein 1138315..1138761 Photobacterium profundum SS9 3121306 YP_132670.1 CDS PBPRB0998 NC_006371.1 1138902 1139402 R hypothetical protein complement(1138902..1139402) Photobacterium profundum SS9 3121309 YP_132671.1 CDS PBPRB0999 NC_006371.1 1139616 1139897 D hypothetical protein 1139616..1139897 Photobacterium profundum SS9 3121313 YP_132672.1 CDS PBPRB1000 NC_006371.1 1140000 1140815 R beta-ketoadipate enol-lactone hydrolase complement(1140000..1140815) Photobacterium profundum SS9 3121316 YP_132673.1 CDS PBPRB1001 NC_006371.1 1140918 1142267 R hypothetical protein complement(1140918..1142267) Photobacterium profundum SS9 3121327 YP_132674.1 CDS PBPRB1002 NC_006371.1 1142516 1142989 R hypothetical protein complement(1142516..1142989) Photobacterium profundum SS9 3121329 YP_132675.1 CDS PBPRB1003 NC_006371.1 1143241 1144041 R hypothetical protein complement(1143241..1144041) Photobacterium profundum SS9 3121331 YP_132676.1 CDS PBPRB1004 NC_006371.1 1144432 1144680 R hypothetical protein complement(1144432..1144680) Photobacterium profundum SS9 3121339 YP_132677.1 CDS PBPRB1005 NC_006371.1 1144679 1144984 D glycerophosphoryl diester phosphodiesterase 1144679..1144984 Photobacterium profundum SS9 3121342 YP_132678.1 CDS PBPRB1006 NC_006371.1 1145032 1145382 D hypothetical protein 1145032..1145382 Photobacterium profundum SS9 3121343 YP_132679.1 CDS PBPRB1007 NC_006371.1 1145610 1146893 D Na+/H+ antiporter 1145610..1146893 Photobacterium profundum SS9 3121350 YP_132680.1 CDS PBPRB1008 NC_006371.1 1147474 1148769 D ATP-dependent RNA helicase 1147474..1148769 Photobacterium profundum SS9 3121351 YP_132681.1 CDS PBPRB1009 NC_006371.1 1149023 1149859 R carbohydrate kinase PfkB family complement(1149023..1149859) Photobacterium profundum SS9 3121352 YP_132682.1 CDS PBPRB1010 NC_006371.1 1150083 1150922 D hypothetical protein 1150083..1150922 Photobacterium profundum SS9 3121358 YP_132683.1 CDS PBPRB1011 NC_006371.1 1150931 1152784 D hypothetical protein 1150931..1152784 Photobacterium profundum SS9 3121363 YP_132684.1 CDS PBPRB1012 NC_006371.1 1152896 1154764 R beta-ketoacyl synthase complement(1152896..1154764) Photobacterium profundum SS9 3121368 YP_132685.1 CDS PBPRB1013 NC_006371.1 1154936 1155916 D hypothetical protein 1154936..1155916 Photobacterium profundum SS9 3121369 YP_132686.1 CDS PBPRB1014 NC_006371.1 1156103 1156621 D hypothetical protein 1156103..1156621 Photobacterium profundum SS9 3121371 YP_132687.1 CDS PBPRB1015 NC_006371.1 1156868 1157143 R hypothetical protein complement(1156868..1157143) Photobacterium profundum SS9 3121376 YP_132688.1 CDS PBPRB1016 NC_006371.1 1157412 1160744 R pullulanase precursor complement(1157412..1160744) Photobacterium profundum SS9 3121381 YP_132689.1 CDS PBPRB1017 NC_006371.1 1161197 1162087 D LysR family transcriptional regulator 1161197..1162087 Photobacterium profundum SS9 3121385 YP_132690.1 CDS PBPRB1018 NC_006371.1 1162222 1162671 R deoxycytidylate deaminase complement(1162222..1162671) Photobacterium profundum SS9 3121386 YP_132691.1 CDS PBPRB1019 NC_006371.1 1162997 1163455 R hypothetical protein complement(1162997..1163455) Photobacterium profundum SS9 3121397 YP_132692.1 CDS PBPRB1020 NC_006371.1 1163452 1164390 R protease complement(1163452..1164390) Photobacterium profundum SS9 3121398 YP_132693.1 CDS PBPRB1021 NC_006371.1 1164578 1164970 R hypothetical protein complement(1164578..1164970) Photobacterium profundum SS9 3121400 YP_132694.1 CDS PBPRB1022 NC_006371.1 1165176 1166252 D hypothetical protein 1165176..1166252 Photobacterium profundum SS9 3121403 YP_132695.1 CDS PBPRB1023 NC_006371.1 1166280 1166966 R ribosomal small subunit pseudouridine synthase A complement(1166280..1166966) Photobacterium profundum SS9 3121404 YP_132696.1 CDS PBPRB1024 NC_006371.1 1167279 1168883 R BCCT family transporter complement(1167279..1168883) Photobacterium profundum SS9 3121410 YP_132697.1 CDS PBPRB1025 NC_006371.1 1169425 1170957 R hypothetical protein complement(1169425..1170957) Photobacterium profundum SS9 3121411 YP_132698.1 CDS PBPRB1026 NC_006371.1 1171020 1171301 D hypothetical protein 1171020..1171301 Photobacterium profundum SS9 3121483 YP_132699.1 CDS PBPRB1027 NC_006371.1 1171292 1173649 R hypothetical protein complement(1171292..1173649) Photobacterium profundum SS9 3121414 YP_132700.1 CDS PBPRB1028 NC_006371.1 1173651 1174115 R hypothetical protein complement(1173651..1174115) Photobacterium profundum SS9 3121416 YP_132701.1 CDS PBPRB1029 NC_006371.1 1174255 1175700 R hypothetical protein complement(1174255..1175700) Photobacterium profundum SS9 3121417 YP_132702.1 CDS PBPRB1030 NC_006371.1 1175704 1176294 R hypothetical protein complement(1175704..1176294) Photobacterium profundum SS9 3121262 YP_132703.1 CDS PBPRB1031 NC_006371.1 1176323 1177801 R hypothetical protein complement(1176323..1177801) Photobacterium profundum SS9 3121418 YP_132704.1 CDS PBPRB1032 NC_006371.1 1177741 1178559 R hypothetical protein complement(1177741..1178559) Photobacterium profundum SS9 3121421 YP_132705.1 CDS PBPRB1033 NC_006371.1 1178608 1179093 R hypothetical protein complement(1178608..1179093) Photobacterium profundum SS9 3121428 YP_132706.1 CDS PBPRB1034 NC_006371.1 1179204 1181225 R hypothetical protein complement(1179204..1181225) Photobacterium profundum SS9 3121429 YP_132707.1 CDS PBPRB1035 NC_006371.1 1182061 1182855 D transcriptional regulator GlpR 1182061..1182855 Photobacterium profundum SS9 3121431 YP_132708.1 CDS PBPRB1036 NC_006371.1 1183238 1184014 D sugar metabolism transcriptional regulator 1183238..1184014 Photobacterium profundum SS9 3121432 YP_132709.1 CDS PBPRB1037 NC_006371.1 1184023 1185327 D tagatose 6-phosphate kinase 1184023..1185327 Photobacterium profundum SS9 3121434 YP_132710.1 CDS PBPRB1038 NC_006371.1 1186528 1187001 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake;involved in N-acetylgalactosamine transport; PTS system N-acetylgalactosamine-specific transporter subunit IIB 1186528..1187001 Photobacterium profundum SS9 3121435 YP_132711.1 CDS PBPRB1039 NC_006371.1 1187019 1187795 D N-acetylgalactosamine-specific IID component, PTS system 1187019..1187795 Photobacterium profundum SS9 3121438 YP_132712.1 CDS PBPRB1040 NC_006371.1 1187785 1188672 D N-acetylgalactosamine-specific IID component, PTS system 1187785..1188672 Photobacterium profundum SS9 3121439 YP_132713.1 CDS PBPRB1041 NC_006371.1 1188748 1189188 D phosphotransferase system enzyme subunit, mannose/fructose-specific component IIA 1188748..1189188 Photobacterium profundum SS9 3121442 YP_132714.1 CDS PBPRB1042 NC_006371.1 1189178 1190371 D N-acetylglucosamine-6-phosphate deacetylase 1189178..1190371 Photobacterium profundum SS9 3121444 YP_132715.1 CDS gatY NC_006371.1 1190362 1191216 D catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; tagatose-bisphosphate aldolase 1190362..1191216 Photobacterium profundum SS9 3121447 YP_132716.1 CDS PBPRB1044 NC_006371.1 1191415 1192338 R LysR family transcriptional regulator complement(1191415..1192338) Photobacterium profundum SS9 3121457 YP_132717.1 CDS PBPRB1045 NC_006371.1 1192418 1193125 D dehydrogenase 1192418..1193125 Photobacterium profundum SS9 3121454 YP_132718.1 CDS PBPRB1046 NC_006371.1 1193210 1194394 D major facilitator superfamily transporter 1193210..1194394 Photobacterium profundum SS9 3121323 YP_132719.1 CDS PBPRB1047 NC_006371.1 1194827 1195393 R hypothetical protein complement(1194827..1195393) Photobacterium profundum SS9 3121462 YP_132720.1 CDS PBPRB1048 NC_006371.1 1195616 1196263 D naphthoate synthase 1195616..1196263 Photobacterium profundum SS9 3121463 YP_132721.1 CDS PBPRB1049 NC_006371.1 1196260 1196598 D dihydroxynaphthoic acid synthase 1196260..1196598 Photobacterium profundum SS9 3121466 YP_132722.1 CDS PBPRB1050 NC_006371.1 1196643 1197113 R hypothetical protein complement(1196643..1197113) Photobacterium profundum SS9 3121467 YP_132723.1 CDS PBPRB1051 NC_006371.1 1197222 1197521 D hypothetical protein 1197222..1197521 Photobacterium profundum SS9 3121469 YP_132724.1 CDS PBPRB1052 NC_006371.1 1197769 1198122 D hypothetical protein 1197769..1198122 Photobacterium profundum SS9 3121477 YP_132725.1 CDS PBPRB1053 NC_006371.1 1198525 1198971 D nitric-oxide reductase 1198525..1198971 Photobacterium profundum SS9 3121478 YP_132726.1 CDS PBPRB1054 NC_006371.1 1198975 1200363 D nitric-oxide reductase subunit B 1198975..1200363 Photobacterium profundum SS9 3121481 YP_132727.1 CDS PBPRB1055 NC_006371.1 1200488 1202329 D dinitrification protein NorD 1200488..1202329 Photobacterium profundum SS9 3121489 YP_132728.1 CDS PBPRB1056 NC_006371.1 1202601 1202969 D hypothetical protein 1202601..1202969 Photobacterium profundum SS9 3121490 YP_132729.1 CDS PBPRB1057 NC_006371.1 1202981 1203790 R denitrification regulatory protein NirQ complement(1202981..1203790) Photobacterium profundum SS9 3121494 YP_132730.1 CDS PBPRB1058 NC_006371.1 1204172 1204426 R hypothetical protein complement(1204172..1204426) Photobacterium profundum SS9 3121492 YP_132731.1 CDS PBPRB1059 NC_006371.1 1204433 1205050 R cytochrome c oxidase polypeptide III complement(1204433..1205050) Photobacterium profundum SS9 3121495 YP_132732.1 CDS PBPRB1060 NC_006371.1 1205119 1206027 R hypothetical protein complement(1205119..1206027) Photobacterium profundum SS9 3121499 YP_132733.1 CDS PBPRB1061 NC_006371.1 1206371 1206805 R hypothetical protein complement(1206371..1206805) Photobacterium profundum SS9 3121500 YP_132734.1 CDS PBPRB1062 NC_006371.1 1207255 1207617 R hypothetical protein complement(1207255..1207617) Photobacterium profundum SS9 3121502 YP_132735.1 CDS PBPRB1063 NC_006371.1 1207861 1208286 R hypothetical protein complement(1207861..1208286) Photobacterium profundum SS9 3121514 YP_132736.1 CDS PBPRB1064 NC_006371.1 1208513 1208767 R hypothetical protein complement(1208513..1208767) Photobacterium profundum SS9 3121518 YP_132737.1 CDS PBPRB1065 NC_006371.1 1209016 1209597 R oxidoreductase complement(1209016..1209597) Photobacterium profundum SS9 3121519 YP_132738.1 CDS PBPRB1066 NC_006371.1 1209979 1210506 R acetyltransferase complement(1209979..1210506) Photobacterium profundum SS9 3121520 YP_132739.1 CDS PBPRB1067 NC_006371.1 1210543 1210773 R hypothetical protein complement(1210543..1210773) Photobacterium profundum SS9 3121521 YP_132740.1 CDS PBPRB1068 NC_006371.1 1211071 1212933 R hypothetical protein complement(1211071..1212933) Photobacterium profundum SS9 3121524 YP_132741.1 CDS PBPRB1069 NC_006371.1 1213125 1214411 D transposase 1213125..1214411 Photobacterium profundum SS9 3121525 YP_132742.1 CDS PBPRB1070 NC_006371.1 1216243 1216974 R transposase complement(1216243..1216974) Photobacterium profundum SS9 3121528 YP_132743.1 CDS PBPRB1071 NC_006371.1 1217260 1218870 D hypothetical protein 1217260..1218870 Photobacterium profundum SS9 3121533 YP_132744.1 CDS PBPRB1072 NC_006371.1 1219313 1220536 D transposase 1219313..1220536 Photobacterium profundum SS9 3121536 YP_132745.1 CDS PBPRB1073 NC_006371.1 1220888 1222042 D hypothetical protein 1220888..1222042 Photobacterium profundum SS9 3121537 YP_132746.1 CDS PBPRB1074 NC_006371.1 1222177 1222488 R hypothetical protein complement(1222177..1222488) Photobacterium profundum SS9 3121545 YP_132747.1 CDS PBPRB1075 NC_006371.1 1222873 1223202 R hypothetical protein complement(1222873..1223202) Photobacterium profundum SS9 3121546 YP_132748.1 CDS PBPRB1076 NC_006371.1 1223232 1223555 R ISVme-ORF2 complement(1223232..1223555) Photobacterium profundum SS9 3121549 YP_132749.1 CDS PBPRB1077 NC_006371.1 1223552 1223860 R hypothetical protein complement(1223552..1223860) Photobacterium profundum SS9 3121551 YP_132750.1 CDS PBPRB1078 NC_006371.1 1224878 1226233 D hypothetical protein 1224878..1226233 Photobacterium profundum SS9 3121552 YP_132751.1 CDS PBPRB1079 NC_006371.1 1226318 1227373 R oxidoreductase complement(1226318..1227373) Photobacterium profundum SS9 3121555 YP_132752.1 CDS PBPRB1080 NC_006371.1 1227376 1227903 R hypothetical protein complement(1227376..1227903) Photobacterium profundum SS9 3121556 YP_132753.1 CDS PBPRB1081 NC_006371.1 1228088 1228963 R virK protein complement(1228088..1228963) Photobacterium profundum SS9 3121557 YP_132754.1 CDS PBPRB1082 NC_006371.1 1229312 1229599 R hypothetical protein complement(1229312..1229599) Photobacterium profundum SS9 3121562 YP_132755.1 CDS PBPRB1083 NC_006371.1 1229896 1230144 D hypothetical protein 1229896..1230144 Photobacterium profundum SS9 3121563 YP_132756.1 CDS PBPRB1084 NC_006371.1 1230278 1231249 R two-component sensor complement(1230278..1231249) Photobacterium profundum SS9 3121564 YP_132757.1 CDS PBPRB1085 NC_006371.1 1231356 1231637 D hypothetical protein 1231356..1231637 Photobacterium profundum SS9 3121569 YP_132758.1 CDS PBPRB1086 NC_006371.1 1231775 1232470 D hypothetical protein 1231775..1232470 Photobacterium profundum SS9 3121571 YP_132759.1 CDS PBPRB1087 NC_006371.1 1232547 1233176 D hypothetical protein 1232547..1233176 Photobacterium profundum SS9 3121573 YP_132760.1 CDS PBPRB1088 NC_006371.1 1233167 1234228 D hypothetical protein 1233167..1234228 Photobacterium profundum SS9 3121581 YP_132761.1 CDS PBPRB1089 NC_006371.1 1234310 1234627 R hypothetical protein complement(1234310..1234627) Photobacterium profundum SS9 3121583 YP_132762.1 CDS PBPRB1090 NC_006371.1 1234747 1235433 R hypothetical protein complement(1234747..1235433) Photobacterium profundum SS9 3121558 YP_132763.1 CDS PBPRB1091 NC_006371.1 1235907 1236317 D hypothetical protein 1235907..1236317 Photobacterium profundum SS9 3121580 YP_132764.1 CDS PBPRB1092 NC_006371.1 1236623 1237267 D hypothetical protein 1236623..1237267 Photobacterium profundum SS9 3121585 YP_132765.1 CDS PBPRB1093 NC_006371.1 1237477 1238364 D catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase 1237477..1238364 Photobacterium profundum SS9 3121589 YP_132766.1 CDS PBPRB1094 NC_006371.1 1238808 1239965 D pyruvate dehydrogenase E1 component, alpha subunit 1238808..1239965 Photobacterium profundum SS9 3121593 YP_132767.1 CDS PBPRB1095 NC_006371.1 1239958 1240941 D putaive pyruvate dehydrogenase E1 component, beta subunit 1239958..1240941 Photobacterium profundum SS9 3121594 YP_132768.1 CDS PBPRB1096 NC_006371.1 1240932 1242101 D Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; branched-chain alpha-keto acid dehydrogenase subunit E2 1240932..1242101 Photobacterium profundum SS9 3121595 YP_132769.1 CDS PBPRB1097 NC_006371.1 1242154 1243149 R electron transfer flavoprotein, alpha subunit complement(1242154..1243149) Photobacterium profundum SS9 3121598 YP_132770.1 CDS PBPRB1098 NC_006371.1 1243216 1244019 R electron transfer flavoprotein,beta subunit complement(1243216..1244019) Photobacterium profundum SS9 3121601 YP_132771.1 CDS PBPRB1099 NC_006371.1 1244236 1245912 D electron transfer flavoprotein-ubiquinone oxidoreductase 1244236..1245912 Photobacterium profundum SS9 3121605 YP_132772.1 CDS PBPRB1100 NC_006371.1 1246043 1248106 R glycosidase complement(1246043..1248106) Photobacterium profundum SS9 3121610 YP_132773.1 CDS PBPRB1101 NC_006371.1 1248266 1248559 R hypothetical protein complement(1248266..1248559) Photobacterium profundum SS9 3121614 YP_132774.1 CDS PBPRB1102 NC_006371.1 1248745 1249806 R saccharopine dehydrogenase complement(1248745..1249806) Photobacterium profundum SS9 3121615 YP_132775.1 CDS PBPRB1103 NC_006371.1 1249999 1250727 R glutathione S-transferase complement(1249999..1250727) Photobacterium profundum SS9 3121609 YP_132776.1 CDS PBPRB1104 NC_006371.1 1251068 1251424 D hypothetical protein 1251068..1251424 Photobacterium profundum SS9 3121629 YP_132777.1 CDS PBPRB1105 NC_006371.1 1251432 1251686 D hypothetical protein 1251432..1251686 Photobacterium profundum SS9 3121632 YP_132778.1 CDS fabG NC_006371.1 1252201 1252959 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(1252201..1252959) Photobacterium profundum SS9 3121634 YP_132779.1 CDS PBPRB1107 NC_006371.1 1252984 1253886 R 3-hydroxyisobutyrate dehydrogenase complement(1252984..1253886) Photobacterium profundum SS9 3121636 YP_132780.1 CDS PBPRB1108 NC_006371.1 1253932 1255065 R enoyl-CoA hydratase complement(1253932..1255065) Photobacterium profundum SS9 3121639 YP_132781.1 CDS PBPRB1109 NC_006371.1 1255147 1255938 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(1255147..1255938) Photobacterium profundum SS9 3121640 YP_132782.1 CDS PBPRB1110 NC_006371.1 1256014 1257204 R acyl-CoA dehydrogenase complement(1256014..1257204) Photobacterium profundum SS9 3121643 YP_132783.1 CDS PBPRB1111 NC_006371.1 1257247 1258830 R methylmalonate-semialdehyde dehydrogenase complement(1257247..1258830) Photobacterium profundum SS9 3121644 YP_132784.1 CDS PBPRB1112 NC_006371.1 1258779 1260026 R acyl-CoA thiolase complement(1258779..1260026) Photobacterium profundum SS9 3121646 YP_132785.1 CDS PBPRB1113 NC_006371.1 1260300 1260677 D transcriptional regulator 1260300..1260677 Photobacterium profundum SS9 3121645 YP_132786.1 CDS PBPRB1114 NC_006371.1 1260726 1261895 D acyl-CoA dehydrogenase 1260726..1261895 Photobacterium profundum SS9 3121619 YP_132787.1 CDS PBPRB1115 NC_006371.1 1261979 1262830 D propionyl-CoA carboxylase(beta subunit) protein 1261979..1262830 Photobacterium profundum SS9 3121723 YP_132788.1 CDS PBPRB1116 NC_006371.1 1263000 1263584 D propionyl-CoA carboxylase(beta subunit) protein 1263000..1263584 Photobacterium profundum SS9 3121624 YP_132789.1 CDS PBPRB1117 NC_006371.1 1263647 1264099 D enoyl-CoA hydratase/isomerase 1263647..1264099 Photobacterium profundum SS9 3119991 YP_132790.1 CDS PBPRB1118 NC_006371.1 1264017 1264574 D hypothetical protein 1264017..1264574 Photobacterium profundum SS9 3121701 YP_132791.1 CDS PBPRB1119 NC_006371.1 1264571 1265473 D hydroxymethylglutaryl-CoA lyase 1264571..1265473 Photobacterium profundum SS9 3121746 YP_132792.1 CDS PBPRB1120 NC_006371.1 1265913 1266191 R hypothetical protein complement(1265913..1266191) Photobacterium profundum SS9 3121745 YP_132793.1 CDS PBPRB1121 NC_006371.1 1266604 1267662 D hypothetical protein 1266604..1267662 Photobacterium profundum SS9 3121690 YP_132794.1 CDS PBPRB1122 NC_006371.1 1267766 1269010 R hypothetical protein complement(1267766..1269010) Photobacterium profundum SS9 3119980 YP_132795.1 CDS PBPRB1123 NC_006371.1 1269352 1270581 R hypothetical protein complement(1269352..1270581) Photobacterium profundum SS9 3119987 YP_132796.1 CDS PBPRB1124 NC_006371.1 1270578 1271261 R ABC transporter, ATP-binding protein complement(1270578..1271261) Photobacterium profundum SS9 3119960 YP_132797.1 CDS PBPRB1125 NC_006371.1 1271264 1272496 R hypothetical protein complement(1271264..1272496) Photobacterium profundum SS9 3121617 YP_132798.1 CDS PBPRB1126 NC_006371.1 1272486 1273715 R hypothetical protein complement(1272486..1273715) Photobacterium profundum SS9 3121623 YP_132799.1 CDS PBPRB1127 NC_006371.1 1273809 1274561 R hypothetical protein complement(1273809..1274561) Photobacterium profundum SS9 3121689 YP_132800.1 CDS PBPRB1128 NC_006371.1 1274874 1275689 R amino acid ABC transporter substrate-binding protein complement(1274874..1275689) Photobacterium profundum SS9 3121698 YP_132801.1 CDS PBPRB1129 NC_006371.1 1275667 1276755 R histidinol phosphate aminotransferase complement(1275667..1276755) Photobacterium profundum SS9 3121697 YP_132802.1 CDS PBPRB1130 NC_006371.1 1276956 1277822 D hypothetical protein 1276956..1277822 Photobacterium profundum SS9 3121693 YP_132803.1 CDS PBPRB1131 NC_006371.1 1277846 1278460 R transporter protein complement(1277846..1278460) Photobacterium profundum SS9 3121699 YP_132804.1 CDS PBPRB1132 NC_006371.1 1278641 1279609 D transcriptional regulator 1278641..1279609 Photobacterium profundum SS9 3121691 YP_132805.1 CDS PBPRB1133 NC_006371.1 1279617 1279886 R hypothetical protein complement(1279617..1279886) Photobacterium profundum SS9 3121695 YP_132806.1 CDS PBPRB1134 NC_006371.1 1280517 1281014 D hypothetical protein 1280517..1281014 Photobacterium profundum SS9 3119994 YP_132807.1 CDS PBPRB1135 NC_006371.1 1281240 1282157 R endonuclease complement(1281240..1282157) Photobacterium profundum SS9 3119988 YP_132808.1 CDS PBPRB1136 NC_006371.1 1282460 1284025 D hypothetical protein 1282460..1284025 Photobacterium profundum SS9 3119962 YP_132809.1 CDS PBPRB1137 NC_006371.1 1284107 1284565 D hypothetical protein 1284107..1284565 Photobacterium profundum SS9 3121631 YP_132810.1 CDS PBPRB1138 NC_006371.1 1284726 1285415 R methyltransferase complement(1284726..1285415) Photobacterium profundum SS9 3121597 YP_132811.1 CDS PBPRB1139 NC_006371.1 1286040 1286579 D hypothetical protein 1286040..1286579 Photobacterium profundum SS9 3121622 YP_132812.1 CDS PBPRB1140 NC_006371.1 1287115 1287564 D hypothetical protein 1287115..1287564 Photobacterium profundum SS9 3121604 YP_132813.1 CDS PBPRB1141 NC_006371.1 1287704 1288984 D hypothetical protein 1287704..1288984 Photobacterium profundum SS9 3121668 YP_132814.1 CDS PBPRB1142 NC_006371.1 1289115 1289363 R hypothetical protein complement(1289115..1289363) Photobacterium profundum SS9 3121630 YP_132815.1 CDS PBPRB1143 NC_006371.1 1289684 1290271 R hypothetical protein complement(1289684..1290271) Photobacterium profundum SS9 3121620 YP_132816.1 CDS PBPRB1144 NC_006371.1 1290365 1291384 R transposase complement(1290365..1291384) Photobacterium profundum SS9 3121628 YP_132817.1 CDS PBPRB1145 NC_006371.1 1291417 1291938 R hypothetical protein complement(1291417..1291938) Photobacterium profundum SS9 3121625 YP_132818.1 CDS PBPRB1146 NC_006371.1 1291950 1292657 R hypothetical protein complement(1291950..1292657) Photobacterium profundum SS9 3121613 YP_132819.1 CDS PBPRB1147 NC_006371.1 1292833 1293177 D hypothetical protein 1292833..1293177 Photobacterium profundum SS9 3121612 YP_132820.1 CDS PBPRB1148 NC_006371.1 1293464 1294609 D hypothetical protein 1293464..1294609 Photobacterium profundum SS9 3121638 YP_132821.1 CDS rbgA NC_006371.1 1295066 1296061 D essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 1295066..1296061 Photobacterium profundum SS9 3121659 YP_132822.1 CDS PBPRB1150 NC_006371.1 1296741 1297901 D transport protein 1296741..1297901 Photobacterium profundum SS9 3121657 YP_132823.1 CDS PBPRB1151 NC_006371.1 1298632 1300368 R hypothetical protein complement(1298632..1300368) Photobacterium profundum SS9 3121654 YP_132824.1 CDS PBPRB1152 NC_006371.1 1300343 1301335 R hypothetical protein complement(1300343..1301335) Photobacterium profundum SS9 3121560 YP_132825.1 CDS PBPRB1153 NC_006371.1 1301439 1301924 D hypothetical protein 1301439..1301924 Photobacterium profundum SS9 3121660 YP_132826.1 CDS PBPRB1154 NC_006371.1 1301929 1302975 D hypothetical protein 1301929..1302975 Photobacterium profundum SS9 3121611 YP_132827.1 CDS PBPRB1155 NC_006371.1 1303254 1304192 R ROK family protein complement(1303254..1304192) Photobacterium profundum SS9 3121570 YP_132828.1 CDS PBPRB1156 NC_006371.1 1304503 1304718 D hypothetical protein 1304503..1304718 Photobacterium profundum SS9 3121618 YP_132829.1 CDS PBPRB1157 NC_006371.1 1304882 1305304 R MarR family transcriptional regulator complement(1304882..1305304) Photobacterium profundum SS9 3121602 YP_132830.1 CDS PBPRB1158 NC_006371.1 1305639 1306634 D alcohol dehydrogenase 1305639..1306634 Photobacterium profundum SS9 3121599 YP_132831.1 CDS PBPRB1159 NC_006371.1 1306734 1307327 R hypothetical protein complement(1306734..1307327) Photobacterium profundum SS9 3121579 YP_132832.1 CDS PBPRB1160 NC_006371.1 1307327 1308973 R paraquat-inducible protein B complement(1307327..1308973) Photobacterium profundum SS9 3121603 YP_132833.1 CDS PBPRB1161 NC_006371.1 1308966 1310354 R paraquat-inducible protein A complement(1308966..1310354) Photobacterium profundum SS9 3121607 YP_132834.1 CDS PBPRB1162 NC_006371.1 1310684 1312069 R transposase complement(1310684..1312069) Photobacterium profundum SS9 3121576 YP_132835.1 CDS PBPRB1163 NC_006371.1 1312211 1312549 R pterin-4-alpha-carbinolamine dehydratase complement(1312211..1312549) Photobacterium profundum SS9 3121577 YP_132836.1 CDS phhA NC_006371.1 1312542 1313354 R phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase complement(1312542..1313354) Photobacterium profundum SS9 3121567 YP_132837.1 CDS PBPRB1165 NC_006371.1 1313899 1315056 D oxidoreductase 1313899..1315056 Photobacterium profundum SS9 3121498 YP_132838.1 CDS PBPRB1166 NC_006371.1 1315146 1316168 D fumarylacetoacetate hydrolase family protein 1315146..1316168 Photobacterium profundum SS9 3121526 YP_132839.1 CDS PBPRB1167 NC_006371.1 1316190 1316849 D glutathione S-transferase family protein 1316190..1316849 Photobacterium profundum SS9 3121531 YP_132840.1 CDS PBPRB1168 NC_006371.1 1316938 1318944 D AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase; acetoacetyl-CoA synthetase 1316938..1318944 Photobacterium profundum SS9 3121550 YP_132841.1 CDS PBPRB1169 NC_006371.1 1319121 1320113 D cobalamin synthesis protein 1319121..1320113 Photobacterium profundum SS9 3121587 YP_132842.1 CDS PBPRB1170 NC_006371.1 1320164 1321591 D TldD protein 1320164..1321591 Photobacterium profundum SS9 3121547 YP_132843.1 CDS PBPRB1171 NC_006371.1 1321591 1322934 D PmbA-related protein 1321591..1322934 Photobacterium profundum SS9 3121532 YP_132844.1 CDS PBPRB1172 NC_006371.1 1323280 1323774 D hypothetical protein 1323280..1323774 Photobacterium profundum SS9 3121504 YP_132845.1 CDS PBPRB1173 NC_006371.1 1323790 1325340 D ABC transporter, ATP-binding protein 1323790..1325340 Photobacterium profundum SS9 3121582 YP_132846.1 CDS ansB NC_006371.1 1325579 1326643 R catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis; L-asparaginase II complement(1325579..1326643) Photobacterium profundum SS9 3121530 YP_132847.1 CDS PBPRB1175 NC_006371.1 1326903 1327154 R hypothetical protein complement(1326903..1327154) Photobacterium profundum SS9 3121527 YP_132848.1 CDS PBPRB1176 NC_006371.1 1327546 1328022 R MarR family transcriptional regulator complement(1327546..1328022) Photobacterium profundum SS9 3121566 YP_132849.1 CDS PBPRB1177 NC_006371.1 1328155 1328577 D organic hydroperoxide resistance protein 1328155..1328577 Photobacterium profundum SS9 3121515 YP_132850.1 CDS PBPRB1178 NC_006371.1 1328710 1329162 R thioesterase complement(1328710..1329162) Photobacterium profundum SS9 3121548 YP_132851.1 CDS PBPRB1179 NC_006371.1 1329588 1330658 D hypothetical protein 1329588..1330658 Photobacterium profundum SS9 3121523 YP_132852.1 CDS PBPRB1180 NC_006371.1 1330816 1331913 R 4-hydroxyphenylpyruvate dioxygenase complement(1330816..1331913) Photobacterium profundum SS9 3121565 YP_132853.1 CDS PBPRB1181 NC_006371.1 1332250 1333227 D hypothetical protein 1332250..1333227 Photobacterium profundum SS9 3121554 YP_132854.1 CDS PBPRB1182 NC_006371.1 1333317 1333871 R glutathione peroxidase complement(1333317..1333871) Photobacterium profundum SS9 3121243 YP_132855.1 CDS PBPRB1183 NC_006371.1 1333945 1334505 D hypothetical protein 1333945..1334505 Photobacterium profundum SS9 3121568 YP_132856.1 CDS PBPRB1184 NC_006371.1 1334686 1335720 R catalyzes the formation of inosine from adenosine; adenosine deaminase complement(1334686..1335720) Photobacterium profundum SS9 3121503 YP_132857.1 CDS PBPRB1185 NC_006371.1 1335905 1337002 D hipothetical membrane protein 1335905..1337002 Photobacterium profundum SS9 3121509 YP_132858.1 CDS PBPRB1186 NC_006371.1 1337164 1337718 D hypothetical protein 1337164..1337718 Photobacterium profundum SS9 3121590 YP_132859.1 CDS PBPRB1187 NC_006371.1 1338514 1339551 D hypothetical protein 1338514..1339551 Photobacterium profundum SS9 3121529 YP_132860.1 CDS PBPRB1188 NC_006371.1 1339698 1339973 R hypothetical protein complement(1339698..1339973) Photobacterium profundum SS9 3121508 YP_132861.1 CDS PBPRB1189 NC_006371.1 1339974 1340495 R hypothetical protein complement(1339974..1340495) Photobacterium profundum SS9 3121241 YP_132862.1 CDS PBPRB1190 NC_006371.1 1341122 1341547 D hypothetical protein 1341122..1341547 Photobacterium profundum SS9 3121346 YP_132863.1 CDS PBPRB1191 NC_006371.1 1341695 1342042 D hypothetical protein 1341695..1342042 Photobacterium profundum SS9 3121578 YP_132864.1 CDS PBPRB1192 NC_006371.1 1342158 1342571 D hypothetical protein 1342158..1342571 Photobacterium profundum SS9 3121277 YP_132865.1 CDS PBPRB1193 NC_006371.1 1343192 1343485 D plasmid stabilization element ParE 1343192..1343485 Photobacterium profundum SS9 3121574 YP_132866.1 CDS PBPRB1194 NC_006371.1 1343599 1344354 R hypothetical protein complement(1343599..1344354) Photobacterium profundum SS9 3121588 YP_132867.1 CDS PBPRB1195 NC_006371.1 1345149 1345445 D hypothetical protein 1345149..1345445 Photobacterium profundum SS9 3121572 YP_132868.1 CDS PBPRB1196 NC_006371.1 1345585 1346106 D transposase 1345585..1346106 Photobacterium profundum SS9 3121559 YP_132869.1 CDS PBPRB1197 NC_006371.1 1346468 1347163 D transposase 1346468..1347163 Photobacterium profundum SS9 3121227 YP_132870.1 CDS PBPRB1198 NC_006371.1 1347263 1347673 D hypothetical protein 1347263..1347673 Photobacterium profundum SS9 3121575 YP_132871.1 CDS PBPRB1199 NC_006371.1 1348085 1349209 R RfbQRSO155-1 complement(1348085..1349209) Photobacterium profundum SS9 3121242 YP_132872.1 CDS PBPRB1200 NC_006371.1 1349928 1350176 D hypothetical protein 1349928..1350176 Photobacterium profundum SS9 3121419 YP_132873.1 CDS PBPRB1201 NC_006371.1 1350166 1350456 D relE protein 1350166..1350456 Photobacterium profundum SS9 3121340 YP_132874.1 CDS PBPRB1202 NC_006371.1 1351015 1352295 D hypothetical protein 1351015..1352295 Photobacterium profundum SS9 3121294 YP_132875.1 CDS PBPRB1203 NC_006371.1 1352411 1352662 D hypothetical protein 1352411..1352662 Photobacterium profundum SS9 3121497 YP_132876.1 CDS PBPRB1204 NC_006371.1 1353209 1353835 D hypothetical protein 1353209..1353835 Photobacterium profundum SS9 3121505 YP_132877.1 CDS PBPRB1205 NC_006371.1 1354596 1355495 R hypothetical protein complement(1354596..1355495) Photobacterium profundum SS9 3121534 YP_132878.1 CDS PBPRB1206 NC_006371.1 1355502 1356377 R permease of ABC transporter complement(1355502..1356377) Photobacterium profundum SS9 3121538 YP_132879.1 CDS PBPRB1207 NC_006371.1 1356377 1357135 R ATP-binding component of ABC transporter complement(1356377..1357135) Photobacterium profundum SS9 3121517 YP_132880.1 CDS PBPRB1208 NC_006371.1 1357138 1358097 R adhesion protein complement(1357138..1358097) Photobacterium profundum SS9 3121535 YP_132881.1 CDS PBPRB1209 NC_006371.1 1358164 1358748 R hypothetical protein complement(1358164..1358748) Photobacterium profundum SS9 3121544 YP_132882.1 CDS PBPRB1210 NC_006371.1 1358745 1359077 R hypothetical protein complement(1358745..1359077) Photobacterium profundum SS9 3121451 YP_132883.1 CDS PBPRB1211 NC_006371.1 1359204 1360043 R hypothetical protein complement(1359204..1360043) Photobacterium profundum SS9 3121373 YP_132884.1 CDS PBPRB1212 NC_006371.1 1360149 1360685 R hypothetical protein complement(1360149..1360685) Photobacterium profundum SS9 3121543 YP_132885.1 CDS PBPRB1213 NC_006371.1 1360725 1361351 R hypothetical protein complement(1360725..1361351) Photobacterium profundum SS9 3121591 YP_132886.1 CDS PBPRB1214 NC_006371.1 1361517 1362098 D hypothetical protein 1361517..1362098 Photobacterium profundum SS9 3121501 YP_132887.1 CDS PBPRB1215 NC_006371.1 1362220 1362879 D membrane-associated protein 1362220..1362879 Photobacterium profundum SS9 3121561 YP_132888.1 CDS PBPRB1216 NC_006371.1 1362951 1364117 R hypothetical protein complement(1362951..1364117) Photobacterium profundum SS9 3121506 YP_132889.1 CDS PBPRB1217 NC_006371.1 1364123 1364806 R TonB2 protein complement(1364123..1364806) Photobacterium profundum SS9 3121211 YP_132890.1 CDS PBPRB1218 NC_006371.1 1364806 1365210 R TonB system transport protein ExbD2 complement(1364806..1365210) Photobacterium profundum SS9 3121460 YP_132891.1 CDS PBPRB1219 NC_006371.1 1365207 1365740 R TonB system transport protein ExbB2 complement(1365207..1365740) Photobacterium profundum SS9 3121516 YP_132892.1 CDS PBPRB1220 NC_006371.1 1365740 1367104 R biopolymer transport protein ExbB-related protein complement(1365740..1367104) Photobacterium profundum SS9 3121420 YP_132893.1 CDS PBPRB1221 NC_006371.1 1367107 1367889 R hypothetical protein complement(1367107..1367889) Photobacterium profundum SS9 3121473 YP_132894.1 CDS PBPRB1222 NC_006371.1 1368284 1370380 R ferrichrome-iron receptor complement(1368284..1370380) Photobacterium profundum SS9 3121423 YP_132895.1 CDS PBPRB1223 NC_006371.1 1370663 1371730 R hypothetical protein complement(1370663..1371730) Photobacterium profundum SS9 3121586 YP_132896.1 CDS PBPRB1224 NC_006371.1 1372076 1372996 R transcriptional regulator complement(1372076..1372996) Photobacterium profundum SS9 3121380 YP_132897.1 CDS PBPRB1225 NC_006371.1 1373847 1375355 R hypothetical protein complement(1373847..1375355) Photobacterium profundum SS9 3121513 YP_132898.1 CDS PBPRB1226 NC_006371.1 1375704 1377077 D cysteinyl-tRNA synthetase CysS 1375704..1377077 Photobacterium profundum SS9 3121512 YP_132899.1 CDS PBPRB1227 NC_006371.1 1377374 1377754 D hypothetical protein 1377374..1377754 Photobacterium profundum SS9 3121486 YP_132900.1 CDS PBPRB1228 NC_006371.1 1377863 1378411 R hypothetical protein complement(1377863..1378411) Photobacterium profundum SS9 3121507 YP_132901.1 CDS PBPRB1229 NC_006371.1 1378616 1379260 D DNA polymerase III 1378616..1379260 Photobacterium profundum SS9 3121372 YP_132902.1 CDS PBPRB1230 NC_006371.1 1379340 1379705 R hypothetical protein complement(1379340..1379705) Photobacterium profundum SS9 3121361 YP_132903.1 CDS PBPRB1231 NC_006371.1 1379983 1381056 D hypothetical protein 1379983..1381056 Photobacterium profundum SS9 3121511 YP_132904.1 CDS PBPRB1232 NC_006371.1 1381325 1382740 R ATP-dependent RNA helicase RhlE complement(1381325..1382740) Photobacterium profundum SS9 3121391 YP_132905.1 CDS PBPRB1233 NC_006371.1 1382954 1383298 R hypothetical protein complement(1382954..1383298) Photobacterium profundum SS9 3121378 YP_132906.1 CDS PBPRB1234 NC_006371.1 1383615 1385525 D 2`,3`-cyclic-nucleotide 2`-phosphodiesterase 1383615..1385525 Photobacterium profundum SS9 3121285 YP_132907.1 CDS PBPRB1235 NC_006371.1 1385909 1386382 R hypothetical protein complement(1385909..1386382) Photobacterium profundum SS9 3121458 YP_132908.1 CDS PBPRB1236 NC_006371.1 1386496 1387431 R hypothetical protein complement(1386496..1387431) Photobacterium profundum SS9 3121288 YP_132909.1 CDS PBPRB1237 NC_006371.1 1387651 1388022 R hypothetical protein complement(1387651..1388022) Photobacterium profundum SS9 3121234 YP_132910.1 CDS PBPRB1238 NC_006371.1 1388144 1388467 R DNA-binding protein complement(1388144..1388467) Photobacterium profundum SS9 3121608 YP_132911.1 CDS PBPRB1239 NC_006371.1 1388861 1389184 D hypothetical protein 1388861..1389184 Photobacterium profundum SS9 3121170 YP_132912.1 CDS PBPRB1240 NC_006371.1 1389401 1389715 D hypothetical protein 1389401..1389715 Photobacterium profundum SS9 3121281 YP_132913.1 CDS PBPRB1241 NC_006371.1 1389931 1390218 D hypothetical protein 1389931..1390218 Photobacterium profundum SS9 3121468 YP_132914.1 CDS PBPRB1242 NC_006371.1 1390241 1391158 D glutamate permease 1390241..1391158 Photobacterium profundum SS9 3121354 YP_132915.1 CDS PBPRB1243 NC_006371.1 1391394 1392044 D hypothetical protein 1391394..1392044 Photobacterium profundum SS9 3121487 YP_132916.1 CDS PBPRB1244 NC_006371.1 1392071 1392409 R hypothetical protein complement(1392071..1392409) Photobacterium profundum SS9 3121252 YP_132917.1 CDS PBPRB1245 NC_006371.1 1392466 1393023 R rhomboid family protein complement(1392466..1393023) Photobacterium profundum SS9 3121202 YP_132918.1 CDS PBPRB1246 NC_006371.1 1393322 1393726 D hypothetical protein 1393322..1393726 Photobacterium profundum SS9 3121345 YP_132919.1 CDS PBPRB1247 NC_006371.1 1393836 1394270 R transposase complement(1393836..1394270) Photobacterium profundum SS9 3121232 YP_132920.1 CDS PBPRB1248 NC_006371.1 1394441 1394875 R MarR family transcriptional regulator complement(1394441..1394875) Photobacterium profundum SS9 3121292 YP_132921.1 CDS PBPRB1249 NC_006371.1 1394979 1395293 D hypothetical protein 1394979..1395293 Photobacterium profundum SS9 3121446 YP_132922.1 CDS PBPRB1251 NC_006371.1 1396688 1397113 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; a fusion protein of this enzyme with MsrB provides protection against oxidative stress in Neisseria gonorrhoeae; methionine sulfoxide reductase A complement(1396688..1397113) Photobacterium profundum SS9 3121472 YP_132923.1 CDS PBPRB1252 NC_006371.1 1397615 1398244 D hypothetical protein 1397615..1398244 Photobacterium profundum SS9 3121304 YP_132924.1 CDS PBPRB1253 NC_006371.1 1398394 1398990 D hypothetical protein 1398394..1398990 Photobacterium profundum SS9 3121493 YP_132925.1 CDS PBPRB1254 NC_006371.1 1399107 1399781 D hypothetical protein 1399107..1399781 Photobacterium profundum SS9 3121237 YP_132926.1 CDS PBPRB1255 NC_006371.1 1399922 1400308 D hypothetical protein 1399922..1400308 Photobacterium profundum SS9 3121367 YP_132927.1 CDS PBPRB1256 NC_006371.1 1400352 1400645 D hypothetical protein 1400352..1400645 Photobacterium profundum SS9 3121317 YP_132928.1 CDS PBPRB1257 NC_006371.1 1400728 1401534 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(1400728..1401534) Photobacterium profundum SS9 3121253 YP_132929.1 CDS PBPRB1258 NC_006371.1 1401730 1403223 D hypothetical protein 1401730..1403223 Photobacterium profundum SS9 3121540 YP_132930.1 CDS PBPRB1259 NC_006371.1 1403230 1403715 R hypothetical protein complement(1403230..1403715) Photobacterium profundum SS9 3121510 YP_132931.1 CDS PBPRB1260 NC_006371.1 1404421 1404744 R arsenical resistance operon repressor complement(1404421..1404744) Photobacterium profundum SS9 3121542 YP_132932.1 CDS PBPRB1261 NC_006371.1 1404933 1405466 D hypothetical protein 1404933..1405466 Photobacterium profundum SS9 3121245 YP_132933.1 CDS PBPRB1262 NC_006371.1 1406286 1407338 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(1406286..1407338) Photobacterium profundum SS9 3121383 YP_132934.1 CDS PBPRB1263 NC_006371.1 1407788 1408549 D amino acid ABC transporter 1407788..1408549 Photobacterium profundum SS9 3121311 YP_132935.1 CDS PBPRB1264 NC_006371.1 1408586 1409416 D amino acid ABC transporter, permease protein 1408586..1409416 Photobacterium profundum SS9 3121445 YP_132936.1 CDS PBPRB1265 NC_006371.1 1409468 1410277 D amino acid ABC transporter 1409468..1410277 Photobacterium profundum SS9 3121310 YP_132937.1 CDS PBPRB1266 NC_006371.1 1410280 1411227 D amino acid ABC transporter, permease protein 1410280..1411227 Photobacterium profundum SS9 3121295 YP_132938.1 CDS PBPRB1267 NC_006371.1 1411335 1413563 R hypothetical protein complement(1411335..1413563) Photobacterium profundum SS9 3121409 YP_132939.1 CDS PBPRB1268 NC_006371.1 1414191 1414697 R hypothetical protein complement(1414191..1414697) Photobacterium profundum SS9 3121275 YP_132940.1 CDS PBPRB1269 NC_006371.1 1414854 1415681 R short chain dehydrogenase complement(1414854..1415681) Photobacterium profundum SS9 3121364 YP_132941.1 CDS PBPRB1270 NC_006371.1 1415916 1416563 D hypothetical protein 1415916..1416563 Photobacterium profundum SS9 3121240 YP_132942.1 CDS PBPRB1271 NC_006371.1 1416977 1418218 D phage integrase family protein 1416977..1418218 Photobacterium profundum SS9 3121430 YP_132943.1 CDS PBPRB1272 NC_006371.1 1418388 1419437 R hypothetical protein complement(1418388..1419437) Photobacterium profundum SS9 3121274 YP_132944.1 CDS PBPRB1273 NC_006371.1 1419434 1419766 R hypothetical protein complement(1419434..1419766) Photobacterium profundum SS9 3121424 YP_132945.1 CDS PBPRB1274 NC_006371.1 1419868 1423752 R hypothetical protein complement(1419868..1423752) Photobacterium profundum SS9 3121334 YP_132946.1 CDS PBPRB1275 NC_006371.1 1424132 1424608 R hypothetical protein complement(1424132..1424608) Photobacterium profundum SS9 3121307 YP_132947.1 CDS PBPRB1276 NC_006371.1 1424609 1424968 R hypothetical protein complement(1424609..1424968) Photobacterium profundum SS9 3121320 YP_132948.1 CDS PBPRB1277 NC_006371.1 1424965 1427370 R hypothetical protein complement(1424965..1427370) Photobacterium profundum SS9 3121408 YP_132949.1 CDS PBPRB1278 NC_006371.1 1427367 1427675 R hypothetical protein complement(1427367..1427675) Photobacterium profundum SS9 3121268 YP_132950.1 CDS PBPRB1279 NC_006371.1 1427693 1428067 R hypothetical protein complement(1427693..1428067) Photobacterium profundum SS9 3121326 YP_132951.1 CDS PBPRB1280 NC_006371.1 1428077 1428715 R hypothetical protein complement(1428077..1428715) Photobacterium profundum SS9 3121356 YP_132952.1 CDS PBPRB1281 NC_006371.1 1428725 1429066 R hypothetical protein complement(1428725..1429066) Photobacterium profundum SS9 3121465 YP_132953.1 CDS PBPRB1282 NC_006371.1 1429081 1429566 R hypothetical protein complement(1429081..1429566) Photobacterium profundum SS9 3121456 YP_132954.1 CDS PBPRB1283 NC_006371.1 1429575 1429895 R hypothetical protein complement(1429575..1429895) Photobacterium profundum SS9 3121278 YP_132955.1 CDS PBPRB1284 NC_006371.1 1429895 1430212 R hypothetical protein complement(1429895..1430212) Photobacterium profundum SS9 3121328 YP_132956.1 CDS PBPRB1285 NC_006371.1 1430218 1430463 R hypothetical protein complement(1430218..1430463) Photobacterium profundum SS9 3121283 YP_132957.1 CDS PBPRB1286 NC_006371.1 1430480 1431742 R gp36 major capsid-like protein complement(1430480..1431742) Photobacterium profundum SS9 3121236 YP_132958.1 CDS PBPRB1287 NC_006371.1 1431756 1432568 R hypothetical protein complement(1431756..1432568) Photobacterium profundum SS9 3121330 YP_132959.1 CDS PBPRB1288 NC_006371.1 1432540 1433688 R phage portal protein complement(1432540..1433688) Photobacterium profundum SS9 3121324 YP_132960.1 CDS PBPRB1289 NC_006371.1 1433806 1435344 R terminase large subunit complement(1433806..1435344) Photobacterium profundum SS9 3121476 YP_132961.1 CDS PBPRB1290 NC_006371.1 1435476 1435904 R hypothetical protein complement(1435476..1435904) Photobacterium profundum SS9 3121254 YP_132962.1 CDS PBPRB1291 NC_006371.1 1436079 1436393 R hypothetical protein complement(1436079..1436393) Photobacterium profundum SS9 3121319 YP_132963.1 CDS PBPRB1292 NC_006371.1 1436516 1437013 D hypothetical protein 1436516..1437013 Photobacterium profundum SS9 3121355 YP_132964.1 CDS PBPRB1293 NC_006371.1 1437004 1437675 D hypothetical protein 1437004..1437675 Photobacterium profundum SS9 3121335 YP_132965.1 CDS PBPRB1294 NC_006371.1 1437940 1438479 R hypothetical protein complement(1437940..1438479) Photobacterium profundum SS9 3121384 YP_132966.1 CDS PBPRB1295 NC_006371.1 1438593 1439036 R hypothetical protein complement(1438593..1439036) Photobacterium profundum SS9 3121305 YP_132967.1 CDS PBPRB1296 NC_006371.1 1439200 1439673 R hypothetical protein complement(1439200..1439673) Photobacterium profundum SS9 3121488 YP_132968.1 CDS PBPRB1297 NC_006371.1 1440363 1440710 R transposase complement(1440363..1440710) Photobacterium profundum SS9 3121470 YP_132969.1 CDS PBPRB1298 NC_006371.1 1440968 1441873 R LysR family transcriptional regulator complement(1440968..1441873) Photobacterium profundum SS9 3121480 YP_132970.1 CDS PBPRB1299 NC_006371.1 1442157 1442516 D hypothetical protein 1442157..1442516 Photobacterium profundum SS9 3121475 YP_132971.1 CDS PBPRB1300 NC_006371.1 1442587 1443147 R hypothetical protein complement(1442587..1443147) Photobacterium profundum SS9 3121359 YP_132972.1 CDS PBPRB1301 NC_006371.1 1443189 1443440 R hypothetical protein complement(1443189..1443440) Photobacterium profundum SS9 3121348 YP_132973.1 CDS PBPRB1302 NC_006371.1 1443813 1444307 R hypothetical protein complement(1443813..1444307) Photobacterium profundum SS9 3121455 YP_132974.1 CDS PBPRB1303 NC_006371.1 1445115 1445912 R hypothetical protein complement(1445115..1445912) Photobacterium profundum SS9 3121393 YP_132975.1 CDS PBPRB1304 NC_006371.1 1445991 1446299 R hypothetical protein complement(1445991..1446299) Photobacterium profundum SS9 3121448 YP_132976.1 CDS PBPRB1305 NC_006371.1 1446725 1447063 D hypothetical protein 1446725..1447063 Photobacterium profundum SS9 3121228 YP_132977.1 CDS PBPRB1306 NC_006371.1 1448277 1448879 D hypothetical protein 1448277..1448879 Photobacterium profundum SS9 3121314 YP_132978.1 CDS PBPRB1307 NC_006371.1 1448867 1450153 R transposase complement(1448867..1450153) Photobacterium profundum SS9 3121296 YP_132979.1 CDS PBPRB1308 NC_006371.1 1450255 1452402 D hypothetical protein 1450255..1452402 Photobacterium profundum SS9 3121427 YP_132980.1 CDS PBPRB1309 NC_006371.1 1452503 1453321 D hypothetical protein 1452503..1453321 Photobacterium profundum SS9 3121370 YP_132981.1 CDS PBPRB1310 NC_006371.1 1453437 1454096 D hypothetical protein 1453437..1454096 Photobacterium profundum SS9 3121333 YP_132982.1 CDS PBPRB1311 NC_006371.1 1454237 1454905 D hypothetical protein 1454237..1454905 Photobacterium profundum SS9 3121461 YP_132983.1 CDS PBPRB1312 NC_006371.1 1455468 1456634 R DNA helicase complement(1455468..1456634) Photobacterium profundum SS9 3121233 YP_132984.1 CDS PBPRB1313 NC_006371.1 1456637 1457503 R hypothetical protein complement(1456637..1457503) Photobacterium profundum SS9 3121412 YP_132985.1 CDS PBPRB1314 NC_006371.1 1457510 1457809 R hypothetical protein complement(1457510..1457809) Photobacterium profundum SS9 3121485 YP_132986.1 CDS PBPRB1315 NC_006371.1 1458037 1458369 D hypothetical protein 1458037..1458369 Photobacterium profundum SS9 3121464 YP_132987.1 CDS PBPRB1316 NC_006371.1 1458756 1459541 D hypothetical protein 1458756..1459541 Photobacterium profundum SS9 3121362 YP_132988.1 CDS PBPRB1317 NC_006371.1 1459578 1459940 D transcriptional regulator 1459578..1459940 Photobacterium profundum SS9 3121413 YP_132989.1 CDS PBPRB1318 NC_006371.1 1460397 1460660 R hypothetical protein complement(1460397..1460660) Photobacterium profundum SS9 3121199 YP_132990.1 CDS PBPRB1319 NC_006371.1 1461481 1462476 R glycine cleavage system T protein complement(1461481..1462476) Photobacterium profundum SS9 3121450 YP_132991.1 CDS PBPRB1320 NC_006371.1 1462678 1464039 R sodium/alanine symporter complement(1462678..1464039) Photobacterium profundum SS9 3121405 YP_132992.1 CDS PBPRB1321 NC_006371.1 1464406 1465032 R HTH_3family transcriptional regulator complement(1464406..1465032) Photobacterium profundum SS9 3121298 YP_132993.1 CDS PBPRB1322 NC_006371.1 1465604 1466899 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1465604..1466899 Photobacterium profundum SS9 3121443 YP_132994.1 CDS PBPRB1323 NC_006371.1 1467091 1467468 D part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 1467091..1467468 Photobacterium profundum SS9 3121425 YP_132995.1 CDS PBPRB1324 NC_006371.1 1467669 1470548 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 1467669..1470548 Photobacterium profundum SS9 3121484 YP_132996.1 CDS PBPRB1325 NC_006371.1 1471706 1472446 R hypothetical protein complement(1471706..1472446) Photobacterium profundum SS9 3121436 YP_132997.1 CDS PBPRB1326 NC_006371.1 1473038 1474036 R hypothetical protein complement(1473038..1474036) Photobacterium profundum SS9 3121402 YP_132998.1 CDS PBPRB1327 NC_006371.1 1474442 1475989 R methyl-accepting chemotaxis protein complement(1474442..1475989) Photobacterium profundum SS9 3121387 YP_132999.1 CDS PBPRB1328 NC_006371.1 1476361 1478511 R catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching enzyme complement(1476361..1478511) Photobacterium profundum SS9 3121332 YP_133000.1 CDS malQ NC_006371.1 1478574 1480748 R amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase complement(1478574..1480748) Photobacterium profundum SS9 3121394 YP_133001.1 CDS PBPRB1330 NC_006371.1 1481193 1483655 R maltodextrin phosphorylase complement(1481193..1483655) Photobacterium profundum SS9 3121266 YP_133002.1 CDS PBPRB1331 NC_006371.1 1484134 1486842 D Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides; transcriptional regulator MalT 1484134..1486842 Photobacterium profundum SS9 3121388 YP_133003.1 CDS PBPRB1332 NC_006371.1 1486930 1487616 D hypothetical protein 1486930..1487616 Photobacterium profundum SS9 3121426 YP_133004.1 CDS PBPRB1333 NC_006371.1 1487819 1488484 D hypothetical protein 1487819..1488484 Photobacterium profundum SS9 3121256 YP_133005.1 CDS PBPRB1334 NC_006371.1 1488685 1488957 D hypothetical protein 1488685..1488957 Photobacterium profundum SS9 3121265 YP_133006.1 CDS PBPRB1335 NC_006371.1 1489003 1489410 D hypothetical protein 1489003..1489410 Photobacterium profundum SS9 3121286 YP_133007.1 CDS PBPRB1336 NC_006371.1 1489467 1489790 D hypothetical protein 1489467..1489790 Photobacterium profundum SS9 3121344 YP_133008.1 CDS PBPRB1337 NC_006371.1 1489826 1491562 R hypothetical protein complement(1489826..1491562) Photobacterium profundum SS9 3121312 YP_133009.1 CDS PBPRB1338 NC_006371.1 1491576 1492889 R Zn-dependent peptidase complement(1491576..1492889) Photobacterium profundum SS9 3121321 YP_133010.1 CDS PBPRB1339 NC_006371.1 1493075 1493941 R transcriptional regulator complement(1493075..1493941) Photobacterium profundum SS9 3121186 YP_133011.1 CDS PBPRB1340 NC_006371.1 1494053 1495120 D secretion protein 1494053..1495120 Photobacterium profundum SS9 3121251 YP_133012.1 CDS PBPRB1341 NC_006371.1 1495159 1496244 D hypothetical protein 1495159..1496244 Photobacterium profundum SS9 3121449 YP_133013.1 CDS PBPRB1342 NC_006371.1 1496659 1497471 D hypothetical protein 1496659..1497471 Photobacterium profundum SS9 3121194 YP_133014.1 CDS PBPRB1343 NC_006371.1 1497481 1498791 D hypothetical protein 1497481..1498791 Photobacterium profundum SS9 3121375 YP_133015.1 CDS PBPRB1344 NC_006371.1 1498828 1499556 R hypothetical protein complement(1498828..1499556) Photobacterium profundum SS9 3121366 YP_133016.1 CDS PBPRB1345 NC_006371.1 1500594 1502123 D hypothetical protein 1500594..1502123 Photobacterium profundum SS9 3121392 YP_133017.1 CDS PBPRB1346 NC_006371.1 1502083 1503453 D hypothetical protein 1502083..1503453 Photobacterium profundum SS9 3121341 YP_133018.1 CDS modC NC_006371.1 1503530 1504606 R Part of the ABC transporter complex modABC involved in molybdenum import; molybdate transporter ATP-binding protein complement(1503530..1504606) Photobacterium profundum SS9 3121267 YP_133019.1 CDS modB NC_006371.1 1504675 1505367 R part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease protein complement(1504675..1505367) Photobacterium profundum SS9 3121325 YP_133020.1 CDS PBPRB1349 NC_006371.1 1505406 1506185 R molybdenum ABC transporter,periplasmic molybdenum-binding protein complement(1505406..1506185) Photobacterium profundum SS9 3121280 YP_133021.1 CDS PBPRB1350 NC_006371.1 1506361 1506645 R hypothetical protein complement(1506361..1506645) Photobacterium profundum SS9 3121377 YP_133022.1 CDS PBPRB1351 NC_006371.1 1506684 1507583 R transcriptional regulator complement(1506684..1507583) Photobacterium profundum SS9 3121479 YP_133023.1 CDS PBPRB1352 NC_006371.1 1507971 1509146 D Na(+)/H(+)-dicarboxylate symporter 1507971..1509146 Photobacterium profundum SS9 3121148 YP_133024.1 CDS PBPRB1353 NC_006371.1 1509252 1510532 D hypothetical protein 1509252..1510532 Photobacterium profundum SS9 3121224 YP_133025.1 CDS PBPRB1354 NC_006371.1 1510645 1512321 D malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1510645..1512321 Photobacterium profundum SS9 3121452 YP_133026.1 CDS PBPRB1355 NC_006371.1 1512465 1513487 R catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase complement(1512465..1513487) Photobacterium profundum SS9 3121229 YP_133027.1 CDS PBPRB1356 NC_006371.1 1513695 1514666 R hypothetical protein complement(1513695..1514666) Photobacterium profundum SS9 3121200 YP_133028.1 CDS PBPRB1357 NC_006371.1 1515263 1516543 D hypothetical protein 1515263..1516543 Photobacterium profundum SS9 3121257 YP_133029.1 CDS PBPRB1358 NC_006371.1 1516469 1517554 R IS-element complement(1516469..1517554) Photobacterium profundum SS9 3121213 YP_133030.1 CDS PBPRB1359 NC_006371.1 1518022 1519587 R hypothetical protein complement(1518022..1519587) Photobacterium profundum SS9 3121482 YP_133031.1 CDS PBPRB1360 NC_006371.1 1519918 1520649 D hypothetical protein 1519918..1520649 Photobacterium profundum SS9 3121131 YP_133032.1 CDS PBPRB1364 NC_006371.1 1521104 1521370 R hypothetical protein complement(1521104..1521370) Photobacterium profundum SS9 3121389 YP_133033.1 CDS PBPRB1366 NC_006371.1 1521385 1522437 R NADH-dependent flavin oxidoreductase complement(1521385..1522437) Photobacterium profundum SS9 3121322 YP_133034.1 CDS PBPRB1367 NC_006371.1 1522640 1523176 D TetR family transcriptional regulator 1522640..1523176 Photobacterium profundum SS9 3121399 YP_133035.1 CDS PBPRB1368 NC_006371.1 1523517 1523780 R hypothetical protein complement(1523517..1523780) Photobacterium profundum SS9 3121374 YP_133036.1 CDS PBPRB1369 NC_006371.1 1523929 1524501 D hypothetical protein 1523929..1524501 Photobacterium profundum SS9 3121271 YP_133037.1 CDS PBPRB1370 NC_006371.1 1524953 1525720 D formate dehydrogenase 1524953..1525720 Photobacterium profundum SS9 3121459 YP_133038.1 CDS PBPRB1371 NC_006371.1 1526006 1526326 R hypothetical protein complement(1526006..1526326) Photobacterium profundum SS9 3121284 YP_133039.1 CDS PBPRB1372 NC_006371.1 1526434 1529496 D tetrathionate reductase 1526434..1529496 Photobacterium profundum SS9 3121315 YP_133040.1 CDS PBPRB1373 NC_006371.1 1530118 1531113 D lipoate-protein ligase A 1530118..1531113 Photobacterium profundum SS9 3121441 YP_133041.2 CDS codB NC_006371.1 1531858 1533099 D cytosine permease 1531858..1533099 Photobacterium profundum SS9 3121204 YP_133042.1 CDS PBPRB1375 NC_006371.1 1533120 1534409 D Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 1533120..1534409 Photobacterium profundum SS9 3121302 YP_133043.1 CDS PBPRB1376 NC_006371.1 1534552 1535757 R serine protease complement(1534552..1535757) Photobacterium profundum SS9 3121239 YP_133044.1 CDS PBPRB1377 NC_006371.1 1535981 1536466 R hypothetical protein complement(1535981..1536466) Photobacterium profundum SS9 3121318 YP_133045.1 CDS PBPRB1378 NC_006371.1 1536508 1537254 R hypothetical protein complement(1536508..1537254) Photobacterium profundum SS9 3121206 YP_133046.1 CDS PBPRB1379 NC_006371.1 1537714 1538718 R catalyzes the formation of inosine from adenosine; adenosine deaminase complement(1537714..1538718) Photobacterium profundum SS9 3121019 YP_133047.1 CDS PBPRB1380 NC_006371.1 1538985 1539245 R hypothetical protein complement(1538985..1539245) Photobacterium profundum SS9 3121422 YP_133048.1 CDS PBPRB1381 NC_006371.1 1539558 1540106 D hypothetical protein 1539558..1540106 Photobacterium profundum SS9 3121407 YP_133049.1 CDS PBPRB1382 NC_006371.1 1540116 1540340 D transcriptional regulator 1540116..1540340 Photobacterium profundum SS9 3121396 YP_133050.1 CDS PBPRB1383 NC_006371.1 1540390 1541586 R hypothetical protein complement(1540390..1541586) Photobacterium profundum SS9 3121395 YP_133051.1 CDS PBPRB1384 NC_006371.1 1541842 1542630 R iron/siderophore ABC transporter ATP-binding protein complement(1541842..1542630) Photobacterium profundum SS9 3121379 YP_133052.1 CDS PBPRB1385 NC_006371.1 1542769 1543146 R iron ABC transporter complement(1542769..1543146) Photobacterium profundum SS9 3121353 YP_133053.1 CDS PBPRB1386 NC_006371.1 1543654 1544868 D (Fe-S)-binding protein 1543654..1544868 Photobacterium profundum SS9 3121336 YP_133054.1 CDS PBPRB1387 NC_006371.1 1545028 1546047 R transposase complement(1545028..1546047) Photobacterium profundum SS9 3121308 YP_133055.1 CDS PBPRB1388 NC_006371.1 1546080 1546601 R transposase complement(1546080..1546601) Photobacterium profundum SS9 3121282 YP_133056.1 CDS PBPRB1389 NC_006371.1 1546839 1547102 R hypothetical protein complement(1546839..1547102) Photobacterium profundum SS9 3121258 YP_133057.1 CDS PBPRB1390 NC_006371.1 1547113 1547442 R hypothetical protein complement(1547113..1547442) Photobacterium profundum SS9 3121187 YP_133058.1 CDS PBPRB1391 NC_006371.1 1548548 1549294 R transposase complement(1548548..1549294) Photobacterium profundum SS9 3121193 YP_133059.1 CDS PBPRB1392 NC_006371.1 1549490 1550395 D hypothetical protein 1549490..1550395 Photobacterium profundum SS9 3121197 YP_133060.1 CDS PBPRB1393 NC_006371.1 1550470 1550850 R hypothetical protein complement(1550470..1550850) Photobacterium profundum SS9 3121184 YP_133061.1 CDS PBPRB1394 NC_006371.1 1550981 1551406 R hypothetical protein complement(1550981..1551406) Photobacterium profundum SS9 3121221 YP_133062.1 CDS PBPRB1395 NC_006371.1 1551408 1551836 R hypothetical protein complement(1551408..1551836) Photobacterium profundum SS9 3121217 YP_133063.1 CDS PBPRB1396 NC_006371.1 1552885 1553772 D hypothetical protein 1552885..1553772 Photobacterium profundum SS9 3121152 YP_133064.1 CDS PBPRB1397 NC_006371.1 1553769 1554821 D transposase 1553769..1554821 Photobacterium profundum SS9 3121220 YP_133065.1 CDS PBPRB1398 NC_006371.1 1555381 1555704 R hypothetical protein complement(1555381..1555704) Photobacterium profundum SS9 3121216 YP_133066.1 CDS PBPRB1399 NC_006371.1 1555945 1556472 R hypothetical protein complement(1555945..1556472) Photobacterium profundum SS9 3121207 YP_133067.1 CDS PBPRB1400 NC_006371.1 1556872 1557264 R hypothetical protein complement(1556872..1557264) Photobacterium profundum SS9 3121203 YP_133068.1 CDS PBPRB1401 NC_006371.1 1557258 1557557 R hypothetical protein complement(1557258..1557557) Photobacterium profundum SS9 3121198 YP_133069.1 CDS PBPRB1402 NC_006371.1 1558196 1558573 D hypothetical protein 1558196..1558573 Photobacterium profundum SS9 3121156 YP_133070.1 CDS PBPRB1403 NC_006371.1 1558667 1560004 R hypothetical protein complement(1558667..1560004) Photobacterium profundum SS9 3121059 YP_133071.1 CDS PBPRB1404 NC_006371.1 1560176 1560649 R hypothetical protein complement(1560176..1560649) Photobacterium profundum SS9 3120763 YP_133072.1 CDS PBPRB1405 NC_006371.1 1560653 1560943 R DNA-binding protein complement(1560653..1560943) Photobacterium profundum SS9 3121007 YP_133073.1 CDS PBPRB1406 NC_006371.1 1561194 1563005 R ATP-binding/permease fusionABC transporter complement(1561194..1563005) Photobacterium profundum SS9 3121165 YP_133074.1 CDS PBPRB1407 NC_006371.1 1563235 1564632 R nuclease complement(1563235..1564632) Photobacterium profundum SS9 3121139 YP_133075.1 CDS PBPRB1408 NC_006371.1 1564923 1566254 R catalyzes the formation of pyruvate from serine; D-serine dehydratase complement(1564923..1566254) Photobacterium profundum SS9 3121164 YP_133076.1 CDS PBPRB1409 NC_006371.1 1566270 1566917 R DsdX permease complement(1566270..1566917) Photobacterium profundum SS9 3121150 YP_133077.1 CDS PBPRB1410 NC_006371.1 1567369 1568406 D transposase 1567369..1568406 Photobacterium profundum SS9 3121132 YP_133078.1 CDS PBPRB1411 NC_006371.1 1568454 1568819 D hypothetical protein 1568454..1568819 Photobacterium profundum SS9 3121133 YP_133079.1 CDS PBPRB1412 NC_006371.1 1568984 1570060 D glucose dehydrogenase 1568984..1570060 Photobacterium profundum SS9 3121134 YP_133080.1 CDS PBPRB1413 NC_006371.1 1570159 1571271 R NADH-dependent flavin oxidoreductase complement(1570159..1571271) Photobacterium profundum SS9 3121146 YP_133081.1 CDS PBPRB1414 NC_006371.1 1571507 1571872 R hypothetical protein complement(1571507..1571872) Photobacterium profundum SS9 3120877 YP_133082.1 CDS PBPRB1415 NC_006371.1 1572173 1573441 D homocysteine synthase 1572173..1573441 Photobacterium profundum SS9 3121136 YP_133083.1 CDS PBPRB1416 NC_006371.1 1573586 1574764 R hypothetical protein complement(1573586..1574764) Photobacterium profundum SS9 3121179 YP_133084.1 CDS PBPRB1417 NC_006371.1 1575477 1576445 D inosine-uridine preferring nucleoside hydrolase 1575477..1576445 Photobacterium profundum SS9 3121181 YP_133085.1 CDS PBPRB1418 NC_006371.1 1576504 1577355 R transcriptional regulator complement(1576504..1577355) Photobacterium profundum SS9 3121168 YP_133086.1 CDS PBPRB1419 NC_006371.1 1577479 1577901 D hypothetical protein 1577479..1577901 Photobacterium profundum SS9 3121169 YP_133087.1 CDS PBPRB1420 NC_006371.1 1577955 1578470 D hypothetical protein 1577955..1578470 Photobacterium profundum SS9 3121153 YP_133088.1 CDS PBPRB1421 NC_006371.1 1578641 1579627 R arginase complement(1578641..1579627) Photobacterium profundum SS9 3121163 YP_133089.1 CDS PBPRB1422 NC_006371.1 1579658 1580233 R transcriptional regulator complement(1579658..1580233) Photobacterium profundum SS9 3120800 YP_133090.1 CDS PBPRB1423 NC_006371.1 1580304 1580651 R transposase complement(1580304..1580651) Photobacterium profundum SS9 3121151 YP_133091.1 CDS PBPRB1424 NC_006371.1 1581334 1581723 D hypothetical protein 1581334..1581723 Photobacterium profundum SS9 3121093 YP_133092.1 CDS PBPRB1425 NC_006371.1 1581955 1582716 D hypothetical protein 1581955..1582716 Photobacterium profundum SS9 3121173 YP_133093.1 CDS PBPRB1426 NC_006371.1 1582842 1583168 D hypothetical protein 1582842..1583168 Photobacterium profundum SS9 3121161 YP_133094.1 CDS PBPRB1427 NC_006371.1 1583189 1583650 R transcriptional regulator complement(1583189..1583650) Photobacterium profundum SS9 3121159 YP_133095.1 CDS PBPRB1428 NC_006371.1 1583941 1584966 R hypothetical protein complement(1583941..1584966) Photobacterium profundum SS9 3121135 YP_133096.1 CDS PBPRB1429 NC_006371.1 1585008 1585943 R multidrug resistance efflux pump complement(1585008..1585943) Photobacterium profundum SS9 3121160 YP_133097.1 CDS PBPRB1430 NC_006371.1 1586338 1587231 R transcriptional regulator complement(1586338..1587231) Photobacterium profundum SS9 3121137 YP_133098.1 CDS PBPRB1431 NC_006371.1 1587265 1588161 R transcriptional regulator complement(1587265..1588161) Photobacterium profundum SS9 3121109 YP_133099.1 CDS PBPRB1432 NC_006371.1 1588327 1588677 D hypothetical protein 1588327..1588677 Photobacterium profundum SS9 3121051 YP_133100.1 CDS PBPRB1433 NC_006371.1 1588682 1589053 D hypothetical protein 1588682..1589053 Photobacterium profundum SS9 3121106 YP_133101.1 CDS PBPRB1434 NC_006371.1 1589313 1589813 D hypothetical protein 1589313..1589813 Photobacterium profundum SS9 3120937 YP_133102.1 CDS PBPRB1436 NC_006371.1 1590922 1591470 R hypothetical protein complement(1590922..1591470) Photobacterium profundum SS9 3120982 YP_133103.1 CDS PBPRB1437 NC_006371.1 1591997 1592362 R hypothetical protein complement(1591997..1592362) Photobacterium profundum SS9 3120782 YP_133104.1 CDS PBPRB1438 NC_006371.1 1592388 1592750 R hypothetical protein complement(1592388..1592750) Photobacterium profundum SS9 3120721 YP_133105.1 CDS PBPRB1439 NC_006371.1 1593335 1594897 R hypothetical protein complement(1593335..1594897) Photobacterium profundum SS9 3120682 YP_133106.1 CDS PBPRB1440 NC_006371.1 1594894 1595574 R hypothetical protein complement(1594894..1595574) Photobacterium profundum SS9 3120781 YP_133107.1 CDS PBPRB1441 NC_006371.1 1595961 1596743 R hypothetical protein complement(1595961..1596743) Photobacterium profundum SS9 3120720 YP_133108.1 CDS PBPRB1442 NC_006371.1 1596733 1597008 R hypothetical protein complement(1596733..1597008) Photobacterium profundum SS9 3120801 YP_133109.1 CDS PBPRB1443 NC_006371.1 1597024 1597554 R hypothetical protein complement(1597024..1597554) Photobacterium profundum SS9 3120846 YP_133110.1 CDS PBPRB1444 NC_006371.1 1597551 1598309 R hypothetical protein complement(1597551..1598309) Photobacterium profundum SS9 3120443 YP_133111.1 CDS PBPRB1445 NC_006371.1 1598561 1598908 R transposase complement(1598561..1598908) Photobacterium profundum SS9 3120822 YP_133112.1 CDS PBPRB1446 NC_006371.1 1599131 1599601 D transposase 1599131..1599601 Photobacterium profundum SS9 3120938 YP_133113.1 CDS PBPRB1447 NC_006371.1 1599603 1600166 D transposase and inactivated derivative 1599603..1600166 Photobacterium profundum SS9 3120832 YP_133114.1 CDS PBPRB1448 NC_006371.1 1603332 1603655 R transposase complement(1603332..1603655) Photobacterium profundum SS9 3120974 YP_133115.1 CDS PBPRB1449 NC_006371.1 1603682 1604179 R transposase complement(1603682..1604179) Photobacterium profundum SS9 3120401 YP_133116.1 CDS PBPRB1450 NC_006371.1 1604188 1604706 R transposase complement(1604188..1604706) Photobacterium profundum SS9 3120774 YP_133117.1 CDS PBPRB1451 NC_006371.1 1604739 1605260 R hypothetical protein complement(1604739..1605260) Photobacterium profundum SS9 3120778 YP_133118.1 CDS PBPRB1452 NC_006371.1 1605282 1606160 R transposase complement(1605282..1606160) Photobacterium profundum SS9 3120754 YP_133119.1 CDS PBPRB1453 NC_006371.1 1606940 1608550 R hypothetical protein complement(1606940..1608550) Photobacterium profundum SS9 3120943 YP_133120.1 CDS PBPRB1454 NC_006371.1 1608835 1609872 D hypothetical protein 1608835..1609872 Photobacterium profundum SS9 3120871 YP_133121.1 CDS PBPRB1455 NC_006371.1 1609879 1610676 D transposase 1609879..1610676 Photobacterium profundum SS9 3120942 YP_133122.1 CDS PBPRB1456 NC_006371.1 1610874 1611395 D transposase 1610874..1611395 Photobacterium profundum SS9 3121034 YP_133123.1 CDS PBPRB1457 NC_006371.1 1611428 1612447 D transposase 1611428..1612447 Photobacterium profundum SS9 3121070 YP_133124.1 CDS PBPRB1458 NC_006371.1 1612759 1613967 R NupC family protein (permease) complement(1612759..1613967) Photobacterium profundum SS9 3121058 YP_133125.1 CDS PBPRB1459 NC_006371.1 1614226 1614480 R hypothetical protein complement(1614226..1614480) Photobacterium profundum SS9 3121037 YP_133126.1 CDS PBPRB1460 NC_006371.1 1614503 1615012 R hypothetical protein complement(1614503..1615012) Photobacterium profundum SS9 3120933 YP_133127.1 CDS PBPRB1461 NC_006371.1 1615462 1616514 R GTP cyclohydrolase II complement(1615462..1616514) Photobacterium profundum SS9 3120955 YP_133128.1 CDS PBPRB1462 NC_006371.1 1616773 1617456 D manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase 1616773..1617456 Photobacterium profundum SS9 3121004 YP_133129.1 CDS PBPRB1463 NC_006371.1 1617848 1619143 D branched chain amino acid transporter 1617848..1619143 Photobacterium profundum SS9 3121021 YP_133130.1 CDS PBPRB1464 NC_006371.1 1619589 1620896 D branched chain amino acid transporter 1619589..1620896 Photobacterium profundum SS9 3120775 YP_133131.1 CDS PBPRB1465 NC_006371.1 1621477 1621773 D hypothetical protein 1621477..1621773 Photobacterium profundum SS9 3121035 YP_133132.1 CDS PBPRB1466 NC_006371.1 1621843 1622184 R hypothetical protein complement(1621843..1622184) Photobacterium profundum SS9 3120726 YP_133133.1 CDS PBPRB1467 NC_006371.1 1622429 1623571 D methyl-accepting chemotaxis protein 1622429..1623571 Photobacterium profundum SS9 3120902 YP_133134.1 CDS PBPRB1468 NC_006371.1 1623590 1625134 R transposase complement(1623590..1625134) Photobacterium profundum SS9 3121123 YP_133135.1 CDS PBPRB1469 NC_006371.1 1625243 1625590 R ISPpu15 transposase complement(1625243..1625590) Photobacterium profundum SS9 3121085 YP_133136.1 CDS PBPRB1470 NC_006371.1 1626754 1627050 D hypothetical protein 1626754..1627050 Photobacterium profundum SS9 3120780 YP_133137.1 CDS PBPRB1471 NC_006371.1 1627125 1627379 R hypothetical protein complement(1627125..1627379) Photobacterium profundum SS9 3120732 YP_133138.1 CDS PBPRB1472 NC_006371.1 1627518 1628540 R hypothetical protein complement(1627518..1628540) Photobacterium profundum SS9 3121001 YP_133139.1 CDS PBPRB1473 NC_006371.1 1628661 1629467 R hypothetical protein complement(1628661..1629467) Photobacterium profundum SS9 3120835 YP_133140.1 CDS PBPRB1474 NC_006371.1 1629716 1630804 R hypothetical protein complement(1629716..1630804) Photobacterium profundum SS9 3120776 YP_133141.1 CDS PBPRB1475 NC_006371.1 1631241 1632428 R hypothetical protein complement(1631241..1632428) Photobacterium profundum SS9 3120714 YP_133142.1 CDS PBPRB1476 NC_006371.1 1632516 1632902 D hypothetical protein 1632516..1632902 Photobacterium profundum SS9 3121066 YP_133143.1 CDS PBPRB1477 NC_006371.1 1633072 1633416 D hypothetical protein 1633072..1633416 Photobacterium profundum SS9 3121128 YP_133144.1 CDS PBPRB1478 NC_006371.1 1633661 1635643 R hypothetical protein complement(1633661..1635643) Photobacterium profundum SS9 3120987 YP_133145.1 CDS PBPRB1479 NC_006371.1 1635627 1636667 R The second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase complement(1635627..1636667) Photobacterium profundum SS9 3120884 YP_133146.1 CDS PBPRB1480 NC_006371.1 1636779 1637129 R hypothetical protein complement(1636779..1637129) Photobacterium profundum SS9 3121036 YP_133147.1 CDS PBPRB1481 NC_006371.1 1637295 1638155 D LysR family transcriptional regulator 1637295..1638155 Photobacterium profundum SS9 3120806 YP_133148.1 CDS PBPRB1482 NC_006371.1 1638818 1639114 D hypothetical protein 1638818..1639114 Photobacterium profundum SS9 3120818 YP_133149.1 CDS PBPRB1483 NC_006371.1 1639114 1639461 D ISPpu15 transposase 1639114..1639461 Photobacterium profundum SS9 3120823 YP_133150.1 CDS PBPRB1484 NC_006371.1 1640139 1641110 D ISPpu15 transposase 1640139..1641110 Photobacterium profundum SS9 3120745 YP_133151.1 CDS PBPRB1485 NC_006371.1 1641107 1642225 R Tn5 trasposase complement(1641107..1642225) Photobacterium profundum SS9 3120892 YP_133152.1 CDS PBPRB1486 NC_006371.1 1642219 1642500 R hypothetical protein complement(1642219..1642500) Photobacterium profundum SS9 3121107 YP_133153.1 CDS PBPRB1487 NC_006371.1 1642657 1643286 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; aspartate kinase 1642657..1643286 Photobacterium profundum SS9 3120713 YP_133154.1 CDS PBPRB1488 NC_006371.1 1643253 1644290 R hypothetical protein complement(1643253..1644290) Photobacterium profundum SS9 3120829 YP_133155.1 CDS PBPRB1489 NC_006371.1 1644300 1644671 D hypothetical protein 1644300..1644671 Photobacterium profundum SS9 3121104 YP_133156.1 CDS PBPRB1490 NC_006371.1 1645264 1645632 D hypothetical protein 1645264..1645632 Photobacterium profundum SS9 3120947 YP_133157.1 CDS PBPRB1491 NC_006371.1 1645965 1648100 D suppressor for copper-sensitivity B precursor 1645965..1648100 Photobacterium profundum SS9 3120994 YP_133158.1 CDS PBPRB1492 NC_006371.1 1648036 1648680 D thioredoxin 1648036..1648680 Photobacterium profundum SS9 3121124 YP_133159.1 CDS PBPRB1493 NC_006371.1 1648811 1649329 R hypothetical protein complement(1648811..1649329) Photobacterium profundum SS9 3120996 YP_133160.1 CDS PBPRB1494 NC_006371.1 1649504 1650010 R lipoprotein NlpC complement(1649504..1650010) Photobacterium profundum SS9 3120756 YP_133161.1 CDS PBPRB1495 NC_006371.1 1650230 1650628 D hypothetical protein 1650230..1650628 Photobacterium profundum SS9 3120881 YP_133162.1 CDS PBPRB1496 NC_006371.1 1651113 1651862 D 1-acyl-sn-glycerol-3-phosphate acyltransferase 1651113..1651862 Photobacterium profundum SS9 3120887 YP_133163.1 CDS PBPRB1497 NC_006371.1 1652095 1652547 R hypothetical protein complement(1652095..1652547) Photobacterium profundum SS9 3120911 YP_133164.1 CDS PBPRB1498 NC_006371.1 1652555 1652971 R hypothetical protein complement(1652555..1652971) Photobacterium profundum SS9 3120898 YP_133165.1 CDS PBPRB1499 NC_006371.1 1653328 1653678 R hypothetical protein complement(1653328..1653678) Photobacterium profundum SS9 3121078 YP_133166.1 CDS PBPRB1500 NC_006371.1 1653829 1654128 R hypothetical protein complement(1653829..1654128) Photobacterium profundum SS9 3121003 YP_133167.1 CDS PBPRB1501 NC_006371.1 1654307 1654660 R hypothetical protein complement(1654307..1654660) Photobacterium profundum SS9 3120972 YP_133168.1 CDS PBPRB1502 NC_006371.1 1655024 1655626 D hypothetical protein 1655024..1655626 Photobacterium profundum SS9 3120981 YP_133169.1 CDS PBPRB1503 NC_006371.1 1655779 1656681 D hypothetical protein 1655779..1656681 Photobacterium profundum SS9 3120948 YP_133170.1 CDS PBPRB1504 NC_006371.1 1656706 1657056 D hypothetical protein 1656706..1657056 Photobacterium profundum SS9 3121096 YP_133171.1 CDS PBPRB1505 NC_006371.1 1657072 1657503 R SoxR protein complement(1657072..1657503) Photobacterium profundum SS9 3121050 YP_133172.1 CDS PBPRB1506 NC_006371.1 1657592 1658791 D hypothetical protein 1657592..1658791 Photobacterium profundum SS9 3120852 YP_133173.1 CDS PBPRB1507 NC_006371.1 1658807 1659136 R hypothetical protein complement(1658807..1659136) Photobacterium profundum SS9 3121082 YP_133174.1 CDS PBPRB1508 NC_006371.1 1659153 1659473 R hypothetical protein complement(1659153..1659473) Photobacterium profundum SS9 3120753 YP_133175.1 CDS PBPRB1509 NC_006371.1 1659796 1660917 D hypothetical protein 1659796..1660917 Photobacterium profundum SS9 3120874 YP_133176.1 CDS PBPRB1510 NC_006371.1 1661046 1661699 R exu regulon transcriptional regulator complement(1661046..1661699) Photobacterium profundum SS9 3120722 YP_133177.1 CDS PBPRB1511 NC_006371.1 1662006 1662773 R dicarboxylate-binding periplasmic protein complement(1662006..1662773) Photobacterium profundum SS9 3120870 YP_133178.1 CDS PBPRB1512 NC_006371.1 1663007 1664071 R TRAP-type C4-dicarboxylate transport system, large permease component complement(1663007..1664071) Photobacterium profundum SS9 3120899 YP_133179.1 CDS PBPRB1513 NC_006371.1 1664091 1664366 R hypothetical protein complement(1664091..1664366) Photobacterium profundum SS9 3120845 YP_133180.1 CDS PBPRB1514 NC_006371.1 1664366 1664884 R TRAP-type C4-dicarboxylate transport system, small permease component complement(1664366..1664884) Photobacterium profundum SS9 3120882 YP_133181.1 CDS PBPRB1515 NC_006371.1 1665640 1666863 D catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; uronate isomerase 1665640..1666863 Photobacterium profundum SS9 3120906 YP_133182.1 CDS PBPRB1516 NC_006371.1 1666863 1668320 D catalyzes the formation of D-tagaturonate from D-altronate; altronate oxidoreductase 1666863..1668320 Photobacterium profundum SS9 3120816 YP_133183.1 CDS PBPRB1517 NC_006371.1 1668313 1669812 D altronate hydrolase, uxaA 1668313..1669812 Photobacterium profundum SS9 3120900 YP_133184.1 CDS PBPRB1518 NC_006371.1 1670230 1671018 D hypothetical protein 1670230..1671018 Photobacterium profundum SS9 3120853 YP_133185.1 CDS PBPRB1522 NC_006371.1 1672295 1673332 D transposase 1672295..1673332 Photobacterium profundum SS9 3120742 YP_133186.1 CDS PBPRB1523 NC_006371.1 1673361 1674557 R hypothetical protein complement(1673361..1674557) Photobacterium profundum SS9 3120867 YP_133187.1 CDS PBPRB1524 NC_006371.1 1674735 1675034 D hypothetical protein 1674735..1675034 Photobacterium profundum SS9 3120838 YP_133188.1 CDS PBPRB1525 NC_006371.1 1675368 1676318 D transposase 1675368..1676318 Photobacterium profundum SS9 3120817 YP_133189.1 CDS PBPRB1526 NC_006371.1 1676730 1677482 D transcriptional regulator 1676730..1677482 Photobacterium profundum SS9 3120792 YP_133190.1 CDS PBPRB1527 NC_006371.1 1677521 1678306 D hypothetical protein 1677521..1678306 Photobacterium profundum SS9 3121125 YP_133191.1 CDS PBPRB1528 NC_006371.1 1678316 1679494 D hypothetical protein 1678316..1679494 Photobacterium profundum SS9 3120905 YP_133192.1 CDS PBPRB1529 NC_006371.1 1679515 1679796 D hypothetical protein 1679515..1679796 Photobacterium profundum SS9 3121140 YP_133193.1 CDS PBPRB1530 NC_006371.1 1679956 1680303 D transposase 1679956..1680303 Photobacterium profundum SS9 3121079 YP_133194.1 CDS PBPRB1531 NC_006371.1 1680835 1681602 D short chain dehydrogenase/reductase family oxidoreductase 1680835..1681602 Photobacterium profundum SS9 3121005 YP_133195.1 CDS PBPRB1532 NC_006371.1 1681615 1682529 D hypothetical protein 1681615..1682529 Photobacterium profundum SS9 3120839 YP_133196.1 CDS PBPRB1533 NC_006371.1 1682535 1684844 D hypothetical protein 1682535..1684844 Photobacterium profundum SS9 3120986 YP_133197.1 CDS PBPRB1534 NC_006371.1 1685019 1685306 D hypothetical protein 1685019..1685306 Photobacterium profundum SS9 3120755 YP_133198.1 CDS PBPRB1535 NC_006371.1 1685645 1686130 D acetyltransferase 1685645..1686130 Photobacterium profundum SS9 3120844 YP_133199.1 CDS PBPRB1536 NC_006371.1 1686384 1687247 R hypothetical protein complement(1686384..1687247) Photobacterium profundum SS9 3121087 YP_133200.1 CDS PBPRB1537 NC_006371.1 1687269 1687856 R hypothetical protein complement(1687269..1687856) Photobacterium profundum SS9 3120699 YP_133201.1 CDS PBPRB1538 NC_006371.1 1688103 1688567 D hypothetical protein 1688103..1688567 Photobacterium profundum SS9 3121048 YP_133202.1 CDS PBPRB1539 NC_006371.1 1688615 1690339 R selenocysteine-specific translation elongation factor complement(1688615..1690339) Photobacterium profundum SS9 3120863 YP_133203.1 CDS PBPRB1540 NC_006371.1 1690447 1691862 R catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase complement(1690447..1691862) Photobacterium profundum SS9 3121065 YP_133204.1 CDS PBPRB1542 NC_006371.1 1692630 1693052 D GrdX protein 1692630..1693052 Photobacterium profundum SS9 3120779 YP_133205.1 CDS PBPRB1543 NC_006371.1 1693408 1694454 R glycine reductase complex selenoprotein B complement(1693408..1694454) Photobacterium profundum SS9 3120765 YP_133206.1 CDS PBPRB1544 NC_006371.1 1694468 1695772 R glycine reductase proprotein GrdE complement(1694468..1695772) Photobacterium profundum SS9 3121033 YP_133207.1 CDS PBPRB1545 NC_006371.1 1695833 1696804 R selenophosphate synthase complement(1695833..1696804) Photobacterium profundum SS9 3121041 YP_133208.1 CDS PBPRB1546 NC_006371.1 1697015 1698211 R Fatty acid/phospholipid biosynthesis enzyme complement(1697015..1698211) Photobacterium profundum SS9 3120992 YP_133209.1 CDS PBPRB1547 NC_006371.1 1698224 1699759 R glycine reductase protein C complement(1698224..1699759) Photobacterium profundum SS9 3121090 YP_133210.1 CDS PBPRB1548 NC_006371.1 1699865 1700188 R GrdA accepts a carboxymethylselenoether from protein B and transfers it to protein C forming a protein C-bound acetyl-thioester; oxidized GrdA is then reduced by thioredoxin; glycine/sarcosine/betaine reductase complex protein A complement(1699865..1700188) Photobacterium profundum SS9 3121083 YP_133211.1 CDS PBPRB1549 NC_006371.1 1700344 1700688 R GrdA accepts a carboxymethylselenoether from protein B and transfers it to protein C forming a protein C-bound acetyl-thioester; oxidized GrdA is then reduced by thioredoxin; glycine/sarcosine/betaine reductase complex protein A complement(1700344..1700688) Photobacterium profundum SS9 3120772 YP_133212.1 CDS PBPRB1550 NC_006371.1 1700931 1701257 R thioredoxin complement(1700931..1701257) Photobacterium profundum SS9 3121027 YP_133213.1 CDS PBPRB1551 NC_006371.1 1701267 1702478 R thioredoxin reductase complement(1701267..1702478) Photobacterium profundum SS9 3120805 YP_133214.1 CDS PBPRB1552 NC_006371.1 1703460 1704872 D catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 1 1703460..1704872 Photobacterium profundum SS9 3121061 YP_133215.1 CDS PBPRB1553 NC_006371.1 1705098 1705454 R hypothetical protein complement(1705098..1705454) Photobacterium profundum SS9 3121040 YP_133216.1 CDS PBPRB1554 NC_006371.1 1705590 1706381 D molybdenum transport regulator 1705590..1706381 Photobacterium profundum SS9 3120785 YP_133217.1 CDS PBPRB1555 NC_006371.1 1706504 1706779 R hypothetical protein complement(1706504..1706779) Photobacterium profundum SS9 3121094 YP_133218.1 CDS PBPRB1556 NC_006371.1 1707134 1707553 D cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 1707134..1707553 Photobacterium profundum SS9 3119961 YP_133219.1 CDS PBPRB1557 NC_006371.1 1707589 1709103 D with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; D-ribose transporter ATP binding protein 1707589..1709103 Photobacterium profundum SS9 3121022 YP_133220.1 CDS rbsC NC_006371.1 1709100 1710089 D functions to transport ribose at high affinity; forms a complex with RbsA2C2B; ribose ABC transporter permease protein 1709100..1710089 Photobacterium profundum SS9 3121117 YP_133221.1 CDS PBPRB1559 NC_006371.1 1710189 1711067 D periplasmic substrate-binding component of the ATP-dependent ribose transport system; D-ribose transporter subunit RbsB 1710189..1711067 Photobacterium profundum SS9 3120795 YP_133222.1 CDS PBPRB1560 NC_006371.1 1711223 1712143 D catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 1711223..1712143 Photobacterium profundum SS9 3120927 YP_133223.1 CDS PBPRB1561 NC_006371.1 1712287 1713288 D ribose operon repressor, rbsR 1712287..1713288 Photobacterium profundum SS9 3121049 YP_133224.1 CDS PBPRB1562 NC_006371.1 1713409 1714053 R 3-oxoacyl-ACP reductase complement(1713409..1714053) Photobacterium profundum SS9 3120901 YP_133225.1 CDS PBPRB1563 NC_006371.1 1714434 1715438 D transcription regulator 1714434..1715438 Photobacterium profundum SS9 3120760 YP_133226.1 CDS PBPRB1564 NC_006371.1 1715457 1716689 R NADH dehydrogenase complement(1715457..1716689) Photobacterium profundum SS9 3120993 YP_133227.1 CDS PBPRB1565 NC_006371.1 1716871 1717218 R transposase complement(1716871..1717218) Photobacterium profundum SS9 3120692 YP_133228.1 CDS PBPRB1566 NC_006371.1 1717561 1718214 R esterase complement(1717561..1718214) Photobacterium profundum SS9 3120837 YP_133229.1 CDS PBPRB1567 NC_006371.1 1718246 1719442 R transposase complement(1718246..1719442) Photobacterium profundum SS9 3121029 YP_133230.1 CDS PBPRB1568 NC_006371.1 1719573 1719827 R hypothetical protein complement(1719573..1719827) Photobacterium profundum SS9 3120797 YP_133231.1 CDS PBPRB1569 NC_006371.1 1720085 1720966 D LysR family transcriptional regulator 1720085..1720966 Photobacterium profundum SS9 3120793 YP_133232.1 CDS PBPRB1570 NC_006371.1 1721061 1721666 R catalyzes the reaction of formaldehyde with glutathione to form S-hydroxymethylglutathione; glutathione-dependent formaldehyde-activating enzyme complement(1721061..1721666) Photobacterium profundum SS9 3121129 YP_133233.1 CDS PBPRB1571 NC_006371.1 1721683 1722075 R hypothetical protein complement(1721683..1722075) Photobacterium profundum SS9 3120828 YP_133234.1 CDS PBPRB1572 NC_006371.1 1722218 1722529 R hypothetical protein complement(1722218..1722529) Photobacterium profundum SS9 3120813 YP_133235.1 CDS PBPRB1573 NC_006371.1 1723265 1724293 D catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane fatty acyl phospholipid synthase 1723265..1724293 Photobacterium profundum SS9 3121112 YP_133236.1 CDS PBPRB1574 NC_006371.1 1724574 1725077 D hypothetical protein 1724574..1725077 Photobacterium profundum SS9 3121067 YP_133237.1 CDS PBPRB1575 NC_006371.1 1725262 1725708 D hypothetical protein 1725262..1725708 Photobacterium profundum SS9 3121047 YP_133238.1 CDS PBPRB1576 NC_006371.1 1725801 1726241 R hypothetical protein complement(1725801..1726241) Photobacterium profundum SS9 3121052 YP_133239.1 CDS PBPRB1577 NC_006371.1 1726420 1727313 D transcriptional regulator 1726420..1727313 Photobacterium profundum SS9 3120332 YP_133240.1 CDS PBPRB1578 NC_006371.1 1727373 1727615 R hypothetical protein complement(1727373..1727615) Photobacterium profundum SS9 3120876 YP_133241.1 CDS PBPRB1581 NC_006371.1 1727859 1728125 R hypothetical protein complement(1727859..1728125) Photobacterium profundum SS9 3121098 YP_133242.2 CDS PBPRB1582 NC_006371.1 1728147 1728869 D hypothetical protein 1728147..1728869 Photobacterium profundum SS9 3120957 YP_133243.1 CDS PBPRB1583 NC_006371.1 1728959 1729537 R hypothetical protein complement(1728959..1729537) Photobacterium profundum SS9 3121009 YP_133244.1 CDS PBPRB1584 NC_006371.1 1729784 1731226 R PTS system, glucose-specific IIBC component complement(1729784..1731226) Photobacterium profundum SS9 3120923 YP_133245.1 CDS PBPRB1585 NC_006371.1 1731502 1732209 D two-component response regulator 1731502..1732209 Photobacterium profundum SS9 3120709 YP_133246.1 CDS PBPRB1586 NC_006371.1 1732199 1733635 D sensor histidine kinase 1732199..1733635 Photobacterium profundum SS9 3120803 YP_133247.1 CDS PBPRB1587 NC_006371.1 1733639 1734880 D binding protein component of ABC sugar transporter 1733639..1734880 Photobacterium profundum SS9 3120771 YP_133248.1 CDS PBPRB1588 NC_006371.1 1735121 1736689 R extracellular protease complement(1735121..1736689) Photobacterium profundum SS9 3120959 YP_133249.1 CDS PBPRB1589 NC_006371.1 1737208 1738488 D hypothetical protein 1737208..1738488 Photobacterium profundum SS9 3120752 YP_133250.1 CDS PBPRB1590 NC_006371.1 1738905 1739228 R hypothetical protein complement(1738905..1739228) Photobacterium profundum SS9 3120913 YP_133251.1 CDS PBPRB1591 NC_006371.1 1739451 1740572 D hypothetical protein 1739451..1740572 Photobacterium profundum SS9 3120949 YP_133252.1 CDS PBPRB1592 NC_006371.1 1740887 1742305 R transcriptional regulator complement(1740887..1742305) Photobacterium profundum SS9 3120705 YP_133253.2 CDS PBPRB1593 NC_006371.1 1742586 1743842 R catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit complement(1742586..1743842) Photobacterium profundum SS9 3120711 YP_133254.1 CDS PBPRB1594 NC_006371.1 1743982 1744926 D LysR family transcriptional regulator 1743982..1744926 Photobacterium profundum SS9 3121105 YP_133255.1 CDS PBPRB1595 NC_006371.1 1745753 1746094 D hypothetical protein 1745753..1746094 Photobacterium profundum SS9 3120854 YP_133256.1 CDS PBPRB1596 NC_006371.1 1746383 1746859 D hypothetical protein 1746383..1746859 Photobacterium profundum SS9 3120929 YP_133257.1 CDS PBPRB1597 NC_006371.1 1747449 1748027 D hypothetical protein 1747449..1748027 Photobacterium profundum SS9 3120878 YP_133258.1 CDS PBPRB1598 NC_006371.1 1748085 1748420 D conjugal transfer protein, TrbC 1748085..1748420 Photobacterium profundum SS9 3121074 YP_133259.1 CDS PBPRB1599 NC_006371.1 1748431 1748724 D mating pair formation protein TrbD 1748431..1748724 Photobacterium profundum SS9 3121119 YP_133260.1 CDS PBPRB1600 NC_006371.1 1748726 1751122 D mating pair formation protein TrbE 1748726..1751122 Photobacterium profundum SS9 3121032 YP_133261.1 CDS PBPRB1601 NC_006371.1 1751222 1752001 D hypothetical protein 1751222..1752001 Photobacterium profundum SS9 3120912 YP_133262.1 CDS PBPRB1602 NC_006371.1 1752026 1752934 D hypothetical protein 1752026..1752934 Photobacterium profundum SS9 3120511 YP_133263.1 CDS PBPRB1603 NC_006371.1 1752944 1754257 D conjugal transfer protein TrbL 1752944..1754257 Photobacterium profundum SS9 3121064 YP_133264.1 CDS PBPRB1604 NC_006371.1 1754260 1754928 D conjugal transfer protein TrbF 1754260..1754928 Photobacterium profundum SS9 3120886 YP_133265.1 CDS PBPRB1605 NC_006371.1 1754941 1755813 D P-type conjugative transfer protein TrbG 1754941..1755813 Photobacterium profundum SS9 3120932 YP_133266.1 CDS PBPRB1606 NC_006371.1 1755817 1756242 D hypothetical protein 1755817..1756242 Photobacterium profundum SS9 3121063 YP_133267.1 CDS PBPRB1607 NC_006371.1 1756319 1757455 D hypothetical protein 1756319..1757455 Photobacterium profundum SS9 3120717 YP_133268.1 CDS PBPRB1608 NC_006371.1 1757479 1758453 D hypothetical protein 1757479..1758453 Photobacterium profundum SS9 3120890 YP_133269.1 CDS PBPRB1609 NC_006371.1 1758453 1759919 D hypothetical protein 1758453..1759919 Photobacterium profundum SS9 3120382 YP_133270.1 CDS PBPRB1610 NC_006371.1 1759916 1760242 D hypothetical protein 1759916..1760242 Photobacterium profundum SS9 3120990 YP_133271.1 CDS PBPRB1611 NC_006371.1 1760371 1761039 D hypothetical protein 1760371..1761039 Photobacterium profundum SS9 3120794 YP_133272.1 CDS PBPRB1612 NC_006371.1 1761084 1761617 D hypothetical protein 1761084..1761617 Photobacterium profundum SS9 3120859 YP_133273.1 CDS PBPRB1613 NC_006371.1 1761620 1763209 D type II secretion protein 1761620..1763209 Photobacterium profundum SS9 3120773 YP_133274.1 CDS PBPRB1614 NC_006371.1 1763206 1764195 D hypothetical protein 1763206..1764195 Photobacterium profundum SS9 3121014 YP_133275.1 CDS PBPRB1615 NC_006371.1 1764207 1764755 D hypothetical protein 1764207..1764755 Photobacterium profundum SS9 3120455 YP_133276.1 CDS PBPRB1616 NC_006371.1 1764757 1765269 D polyprotein 1764757..1765269 Photobacterium profundum SS9 3120891 YP_133277.1 CDS PBPRB1617 NC_006371.1 1765269 1766213 D type IV pilin PilA 1765269..1766213 Photobacterium profundum SS9 3120907 YP_133278.1 CDS PBPRB1618 NC_006371.1 1766229 1766648 D hypothetical protein 1766229..1766648 Photobacterium profundum SS9 3120707 YP_133279.1 CDS PBPRB1619 NC_006371.1 1766811 1767869 D hypothetical protein 1766811..1767869 Photobacterium profundum SS9 3120766 YP_133280.1 CDS PBPRB1620 NC_006371.1 1767956 1768483 D conjugal transfer protein TraF 1767956..1768483 Photobacterium profundum SS9 3121025 YP_133281.1 CDS PBPRB1621 NC_006371.1 1768486 1769013 D conjugal transfer protein 1768486..1769013 Photobacterium profundum SS9 3120831 YP_133282.1 CDS PBPRB1622 NC_006371.1 1769029 1770891 D hypothetical protein 1769029..1770891 Photobacterium profundum SS9 3120847 YP_133283.1 CDS PBPRB1623 NC_006371.1 1771055 1771378 D hypothetical protein 1771055..1771378 Photobacterium profundum SS9 3121073 YP_133284.1 CDS PBPRB1624 NC_006371.1 1771395 1773161 R hypothetical protein complement(1771395..1773161) Photobacterium profundum SS9 3120566 YP_133285.1 CDS PBPRB1625 NC_006371.1 1773158 1773481 R hypothetical protein complement(1773158..1773481) Photobacterium profundum SS9 3120702 YP_133286.1 CDS PBPRB1626 NC_006371.1 1773756 1774076 D hypothetical protein 1773756..1774076 Photobacterium profundum SS9 3120735 YP_133287.1 CDS PBPRB1627 NC_006371.1 1774092 1774655 D hypothetical protein 1774092..1774655 Photobacterium profundum SS9 3121775 YP_133288.1 CDS PBPRB1628 NC_006371.1 1774950 1775429 D hypothetical protein 1774950..1775429 Photobacterium profundum SS9 3121886 YP_133289.1 CDS PBPRB1629 NC_006371.1 1775707 1776222 R hypothetical protein complement(1775707..1776222) Photobacterium profundum SS9 3121889 YP_133290.1 CDS PBPRB1630 NC_006371.1 1776334 1776588 R hypothetical protein complement(1776334..1776588) Photobacterium profundum SS9 3121737 YP_133291.1 CDS PBPRB1631 NC_006371.1 1776761 1777738 R antirestriction protein complement(1776761..1777738) Photobacterium profundum SS9 3121856 YP_133292.1 CDS PBPRB1632 NC_006371.1 1778663 1778986 D Gfo/Idh/MocA family oxidoreductase 1778663..1778986 Photobacterium profundum SS9 3121743 YP_133293.1 CDS PBPRB1633 NC_006371.1 1778983 1779453 D hypothetical protein 1778983..1779453 Photobacterium profundum SS9 3121749 YP_133294.1 CDS PBPRB1634 NC_006371.1 1779758 1780114 D cation efflux pump 1779758..1780114 Photobacterium profundum SS9 3121795 YP_133295.1 CDS PBPRB1635 NC_006371.1 1780534 1781109 D Na+-driven multidrug efflux pump 1780534..1781109 Photobacterium profundum SS9 3121770 YP_133296.1 CDS PBPRB1636 NC_006371.1 1781278 1782225 D transcriptional regulator 1781278..1782225 Photobacterium profundum SS9 3121785 YP_133297.1 CDS PBPRB1637 NC_006371.1 1782511 1783653 D RND multidrug efflux membrane fusion protein MexE 1782511..1783653 Photobacterium profundum SS9 3121769 YP_133298.1 CDS PBPRB1638 NC_006371.1 1783665 1786799 D multidrug efflux RND transporter MexF 1783665..1786799 Photobacterium profundum SS9 3121851 YP_133299.1 CDS PBPRB1639 NC_006371.1 1787124 1788143 D hypothetical protein 1787124..1788143 Photobacterium profundum SS9 3121911 YP_133300.1 CDS PBPRB1640 NC_006371.1 1788666 1789694 R hypothetical protein complement(1788666..1789694) Photobacterium profundum SS9 3121776 YP_133301.1 CDS PBPRB1641 NC_006371.1 1789755 1790141 D hypothetical protein 1789755..1790141 Photobacterium profundum SS9 3121761 YP_133302.1 CDS PBPRB1642 NC_006371.1 1790355 1790921 D hypothetical protein 1790355..1790921 Photobacterium profundum SS9 3121753 YP_133303.1 CDS PBPRB1643 NC_006371.1 1791024 1791368 D ArsR family transcriptional regulator 1791024..1791368 Photobacterium profundum SS9 3121756 YP_133304.1 CDS PBPRB1644 NC_006371.1 1791476 1792816 D succinate-semialdehyde dehydrogenase 1791476..1792816 Photobacterium profundum SS9 3121853 YP_133305.1 CDS PBPRB1645 NC_006371.1 1792826 1793593 D hypothetical protein 1792826..1793593 Photobacterium profundum SS9 3121918 YP_133306.1 CDS PBPRB1646 NC_006371.1 1793609 1794757 D oxygen-independent coproporphyrinogen III oxidase 1793609..1794757 Photobacterium profundum SS9 3121782 YP_133307.1 CDS PBPRB1647 NC_006371.1 1794886 1795506 R threonine efflux protein complement(1794886..1795506) Photobacterium profundum SS9 3121890 YP_133308.1 CDS PBPRB1648 NC_006371.1 1795208 1796086 R transcriptional regulator complement(1795208..1796086) Photobacterium profundum SS9 3121919 YP_133309.1 CDS PBPRB1649 NC_006371.1 1796297 1796683 D transposase 1796297..1796683 Photobacterium profundum SS9 3121767 YP_133310.1 CDS PBPRB1650 NC_006371.1 1797648 1798739 R N-ethylmaleimide reductase complement(1797648..1798739) Photobacterium profundum SS9 3121788 YP_133311.1 CDS PBPRB1651 NC_006371.1 1798742 1799725 R N-ethylmaleimide reductase complement(1798742..1799725) Photobacterium profundum SS9 3121829 YP_133312.1 CDS PBPRB1652 NC_006371.1 1799972 1800865 R LysR family transcriptional regulator complement(1799972..1800865) Photobacterium profundum SS9 3121880 YP_133313.1 CDS PBPRB1653 NC_006371.1 1801050 1801535 R transposase complement(1801050..1801535) Photobacterium profundum SS9 3121870 YP_133314.1 CDS PBPRB1654 NC_006371.1 1801780 1802310 R ribosomal protein N-acetyltransferase complement(1801780..1802310) Photobacterium profundum SS9 3121855 YP_133315.1 CDS PBPRB1655 NC_006371.1 1802530 1802847 D transposase Tn10 1802530..1802847 Photobacterium profundum SS9 3121838 YP_133316.1 CDS PBPRB1656 NC_006371.1 1802938 1803498 R transposase complement(1802938..1803498) Photobacterium profundum SS9 3121772 YP_133317.1 CDS PBPRB1657 NC_006371.1 1803744 1804112 R transcriptional regulator complement(1803744..1804112) Photobacterium profundum SS9 3121857 YP_133318.1 CDS PBPRB1658 NC_006371.1 1804346 1804825 R hypothetical protein complement(1804346..1804825) Photobacterium profundum SS9 3121881 YP_133319.1 CDS PBPRB1659 NC_006371.1 1804922 1805506 R hypothetical protein complement(1804922..1805506) Photobacterium profundum SS9 3121908 YP_133320.1 CDS PBPRB1660 NC_006371.1 1806249 1806599 D acyl-CoA synthetase 1806249..1806599 Photobacterium profundum SS9 3121847 YP_133321.1 CDS PBPRB1661 NC_006371.1 1806635 1806901 R hypothetical protein complement(1806635..1806901) Photobacterium profundum SS9 3121739 YP_133322.1 CDS PBPRB1662 NC_006371.1 1806902 1807642 R transposase complement(1806902..1807642) Photobacterium profundum SS9 3121846 YP_133323.1 CDS PBPRB1663 NC_006371.1 1807938 1808231 R hypothetical protein complement(1807938..1808231) Photobacterium profundum SS9 3121930 YP_133324.1 CDS PBPRB1664 NC_006371.1 1808543 1809340 D transposase 1808543..1809340 Photobacterium profundum SS9 3121752 YP_133325.1 CDS PBPRB1665 NC_006371.1 1809667 1810092 R riboflavin biosynthesis protein RibD complement(1809667..1810092) Photobacterium profundum SS9 3121902 YP_133326.1 CDS PBPRB1666 NC_006371.1 1810676 1810972 R hypothetical protein complement(1810676..1810972) Photobacterium profundum SS9 3121929 YP_133327.1 CDS PBPRB1667 NC_006371.1 1811051 1811806 R short chain dehydrogenase complement(1811051..1811806) Photobacterium profundum SS9 3121804 YP_133328.1 CDS PBPRB1668 NC_006371.1 1811815 1812210 R hypothetical protein complement(1811815..1812210) Photobacterium profundum SS9 3121867 YP_133329.1 CDS PBPRB1669 NC_006371.1 1812314 1813009 R transcriptional regulator complement(1812314..1813009) Photobacterium profundum SS9 3121778 YP_133330.1 CDS PBPRB1670 NC_006371.1 1814272 1814904 R hypothetical protein complement(1814272..1814904) Photobacterium profundum SS9 3121883 YP_133331.1 CDS PBPRB1671 NC_006371.1 1815106 1815474 R hypothetical protein complement(1815106..1815474) Photobacterium profundum SS9 3121777 YP_133332.1 CDS PBPRB1672 NC_006371.1 1815474 1815779 R hypothetical protein complement(1815474..1815779) Photobacterium profundum SS9 3121705 YP_133333.1 CDS PBPRB1673 NC_006371.1 1816114 1816410 R hypothetical protein complement(1816114..1816410) Photobacterium profundum SS9 3121688 YP_133334.1 CDS PBPRB1674 NC_006371.1 1816697 1817026 D phage repressor protein C 1816697..1817026 Photobacterium profundum SS9 3121901 YP_133335.1 CDS PBPRB1675 NC_006371.1 1817093 1818073 D bacteriophage integrase 1817093..1818073 Photobacterium profundum SS9 3121892 YP_133336.1 CDS PBPRB1676 NC_006371.1 1818244 1819425 D sodium/hydrogen antiporter family protein 1818244..1819425 Photobacterium profundum SS9 3121840 YP_133337.1 CDS PBPRB1677 NC_006371.1 1819585 1822656 R AcrB/AcrD/AcrF family transporter complement(1819585..1822656) Photobacterium profundum SS9 3121852 YP_133338.1 CDS PBPRB1678 NC_006371.1 1822653 1823738 R periplasmic linker protein complement(1822653..1823738) Photobacterium profundum SS9 3121781 YP_133339.1 CDS PBPRB1679 NC_006371.1 1823741 1824808 R multidrug resistance protein complement(1823741..1824808) Photobacterium profundum SS9 3121818 YP_133340.1 CDS PBPRB1680 NC_006371.1 1825423 1826646 R multidrug resistance efflux pump complement(1825423..1826646) Photobacterium profundum SS9 3121787 YP_133341.1 CDS PBPRB1681 NC_006371.1 1826639 1827016 R major facilitator superfamily permease complement(1826639..1827016) Photobacterium profundum SS9 3121763 YP_133342.1 CDS PBPRB1682 NC_006371.1 1827335 1828228 D AraC family transcriptional regulator 1827335..1828228 Photobacterium profundum SS9 3121742 YP_133343.1 CDS PBPRB1683 NC_006371.1 1828238 1828750 R hypothetical protein complement(1828238..1828750) Photobacterium profundum SS9 3121917 YP_133344.1 CDS PBPRB1684 NC_006371.1 1829043 1829978 D hypothetical protein 1829043..1829978 Photobacterium profundum SS9 3121926 YP_133345.1 CDS PBPRB1685 NC_006371.1 1830305 1831792 R glycine betaine transporter complement(1830305..1831792) Photobacterium profundum SS9 3121899 YP_133346.1 CDS PBPRB1686 NC_006371.1 1832253 1833920 D SecA-like protein 1832253..1833920 Photobacterium profundum SS9 3121895 YP_133347.1 CDS PBPRB1687 NC_006371.1 1834046 1835233 R hypothetical protein complement(1834046..1835233) Photobacterium profundum SS9 3121831 YP_133348.1 CDS PBPRB1688 NC_006371.1 1835301 1836566 D hypothetical protein 1835301..1836566 Photobacterium profundum SS9 3121920 YP_133349.1 CDS PBPRB1689 NC_006371.1 1836720 1837187 D hypothetical protein 1836720..1837187 Photobacterium profundum SS9 3121750 YP_133350.1 CDS PBPRB1690 NC_006371.1 1837721 1838518 R hypothetical protein complement(1837721..1838518) Photobacterium profundum SS9 3121842 YP_133351.1 CDS PBPRB1691 NC_006371.1 1838597 1838905 R hypothetical protein complement(1838597..1838905) Photobacterium profundum SS9 3121825 YP_133352.1 CDS PBPRB1692 NC_006371.1 1839386 1840273 D hypothetical protein 1839386..1840273 Photobacterium profundum SS9 3121914 YP_133353.1 CDS PBPRB1693 NC_006371.1 1840270 1841322 D transposase 1840270..1841322 Photobacterium profundum SS9 3121905 YP_133354.1 CDS PBPRB1694 NC_006371.1 1841590 1843155 D hypothetical protein 1841590..1843155 Photobacterium profundum SS9 3121935 YP_133355.1 CDS PBPRB1695 NC_006371.1 1843584 1843835 D hypothetical protein 1843584..1843835 Photobacterium profundum SS9 3121866 YP_133356.1 CDS PBPRB1696 NC_006371.1 1844257 1844796 R hypothetical protein complement(1844257..1844796) Photobacterium profundum SS9 3121794 YP_133357.1 CDS PBPRB1697 NC_006371.1 1844967 1846154 D hypothetical protein 1844967..1846154 Photobacterium profundum SS9 3121828 YP_133358.1 CDS PBPRB1698 NC_006371.1 1846268 1846774 R GNAT family acetyltransferase complement(1846268..1846774) Photobacterium profundum SS9 3121837 YP_133359.1 CDS PBPRB1699 NC_006371.1 1846840 1848063 D transposase 1846840..1848063 Photobacterium profundum SS9 3121806 YP_133360.1 CDS PBPRB1700 NC_006371.1 1848487 1849776 R hypothetical protein complement(1848487..1849776) Photobacterium profundum SS9 3121937 YP_133361.1 CDS PBPRB1701 NC_006371.1 1849988 1850524 R hypothetical protein complement(1849988..1850524) Photobacterium profundum SS9 3121757 YP_133362.1 CDS PBPRB1702 NC_006371.1 1850536 1851036 R hypothetical protein complement(1850536..1851036) Photobacterium profundum SS9 3121933 YP_133363.1 CDS PBPRB1703 NC_006371.1 1851493 1851786 R hypothetical protein complement(1851493..1851786) Photobacterium profundum SS9 3121780 YP_133364.1 CDS PBPRB1704 NC_006371.1 1852579 1852893 R hypothetical protein complement(1852579..1852893) Photobacterium profundum SS9 3121812 YP_133365.1 CDS PBPRB1705 NC_006371.1 1853074 1854270 R hypothetical protein complement(1853074..1854270) Photobacterium profundum SS9 3121751 YP_133366.1 CDS PBPRB1706 NC_006371.1 1855126 1855512 R hypothetical protein complement(1855126..1855512) Photobacterium profundum SS9 3121932 YP_133367.1 CDS PBPRB1707 NC_006371.1 1856254 1856556 R hypothetical protein complement(1856254..1856556) Photobacterium profundum SS9 3121821 YP_133368.1 CDS PBPRB1708 NC_006371.1 1856764 1857951 D hypothetical protein 1856764..1857951 Photobacterium profundum SS9 3121924 YP_133369.1 CDS PBPRB1709 NC_006371.1 1859801 1861366 D hypothetical protein 1859801..1861366 Photobacterium profundum SS9 3121800 YP_133370.1 CDS PBPRB1710 NC_006371.1 1861695 1862102 R hypothetical protein complement(1861695..1862102) Photobacterium profundum SS9 3121760 YP_133371.1 CDS PBPRB1711 NC_006371.1 1862114 1862713 R hypothetical protein complement(1862114..1862713) Photobacterium profundum SS9 3121789 YP_133372.1 CDS PBPRB1712 NC_006371.1 1862746 1863267 R transposase complement(1862746..1863267) Photobacterium profundum SS9 3121819 YP_133373.1 CDS PBPRB1713 NC_006371.1 1863331 1863750 D hypothetical protein 1863331..1863750 Photobacterium profundum SS9 3121916 YP_133374.1 CDS PBPRB1714 NC_006371.1 1863915 1865357 D hypothetical protein 1863915..1865357 Photobacterium profundum SS9 3121790 YP_133375.1 CDS PBPRB1715 NC_006371.1 1865753 1866199 R hypothetical protein complement(1865753..1866199) Photobacterium profundum SS9 3121730 YP_133376.1 CDS PBPRB1716 NC_006371.1 1866311 1867354 R catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase complement(1866311..1867354) Photobacterium profundum SS9 3121815 YP_133377.1 CDS PBPRB1717 NC_006371.1 1867721 1868050 D hypothetical protein 1867721..1868050 Photobacterium profundum SS9 3121733 YP_133378.1 CDS PBPRB1718 NC_006371.1 1868367 1869263 R hypothetical protein complement(1868367..1869263) Photobacterium profundum SS9 3121758 YP_133379.1 CDS PBPRB1719 NC_006371.1 1869421 1870566 R transposase complement(1869421..1870566) Photobacterium profundum SS9 3121832 YP_133380.1 CDS PBPRB1720 NC_006371.1 1870602 1870868 R hypothetical protein complement(1870602..1870868) Photobacterium profundum SS9 3121906 YP_133381.1 CDS PBPRB1721 NC_006371.1 1870957 1871937 R hypothetical protein complement(1870957..1871937) Photobacterium profundum SS9 3121839 YP_133382.1 CDS PBPRB1722 NC_006371.1 1872237 1873403 R oligogalacturonate lyase complement(1872237..1873403) Photobacterium profundum SS9 3121910 YP_133383.1 CDS PBPRB1723 NC_006371.1 1873455 1875167 R transporter complement(1873455..1875167) Photobacterium profundum SS9 3121729 YP_133384.1 CDS PBPRB1724 NC_006371.1 1875394 1876344 R hypothetical protein complement(1875394..1876344) Photobacterium profundum SS9 3121718 YP_133385.1 CDS PBPRB1725 NC_006371.1 1876686 1878821 R exopolygalacturonate lyase complement(1876686..1878821) Photobacterium profundum SS9 3121801 YP_133386.1 CDS PBPRB1726 NC_006371.1 1878932 1879618 R hypothetical protein complement(1878932..1879618) Photobacterium profundum SS9 3121865 YP_133387.1 CDS PBPRB1727 NC_006371.1 1879920 1880594 R transcriptional regulator complement(1879920..1880594) Photobacterium profundum SS9 3121835 YP_133388.1 CDS PBPRB1728 NC_006371.1 1880820 1882127 R permease large protein, C4-dicarboxylate transport system complement(1880820..1882127) Photobacterium profundum SS9 3121711 YP_133389.1 CDS PBPRB1729 NC_006371.1 1882140 1882625 R C4-dicarboxylate transporter, small permease component complement(1882140..1882625) Photobacterium profundum SS9 3121715 YP_133390.1 CDS PBPRB1730 NC_006371.1 1882738 1883730 R C4-dicarboxylate-binding protein complement(1882738..1883730) Photobacterium profundum SS9 3121721 YP_133391.1 CDS PBPRB1731 NC_006371.1 1883765 1884604 R 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; 5-keto-4-deoxyuronate isomerase complement(1883765..1884604) Photobacterium profundum SS9 3121773 YP_133392.1 CDS PBPRB1732 NC_006371.1 1884872 1885495 R catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase complement(1884872..1885495) Photobacterium profundum SS9 3121774 YP_133393.1 CDS PBPRB1733 NC_006371.1 1885507 1886436 R 2-dehydro-3-deoxygluconokinase complement(1885507..1886436) Photobacterium profundum SS9 3121714 YP_133394.1 CDS PBPRB1734 NC_006371.1 1886625 1887212 R hypothetical protein complement(1886625..1887212) Photobacterium profundum SS9 3121740 YP_133395.1 CDS PBPRB1735 NC_006371.1 1887303 1887623 R hypothetical protein complement(1887303..1887623) Photobacterium profundum SS9 3121708 YP_133396.1 CDS PBPRB1736 NC_006371.1 1887642 1888121 R hypothetical protein complement(1887642..1888121) Photobacterium profundum SS9 3121726 YP_133397.1 CDS PBPRB1737 NC_006371.1 1888192 1888953 R catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; 2-deoxy-D-gluconate 3-dehydrogenase complement(1888192..1888953) Photobacterium profundum SS9 3121784 YP_133398.1 CDS PBPRB1738 NC_006371.1 1889212 1889997 D transcriptional regulator 1889212..1889997 Photobacterium profundum SS9 3121759 YP_133399.1 CDS PBPRB1739 NC_006371.1 1890075 1891943 D hypothetical protein 1890075..1891943 Photobacterium profundum SS9 3121727 YP_133400.1 CDS PBPRB1740 NC_006371.1 1891946 1892656 D DNA polymerase III 1891946..1892656 Photobacterium profundum SS9 3121717 YP_133401.1 CDS PBPRB1741 NC_006371.1 1892742 1894481 R carnitine o-acyltransferase complement(1892742..1894481) Photobacterium profundum SS9 3121716 YP_133402.1 CDS PBPRB1742 NC_006371.1 1894727 1895929 R ATP-binding component of ABC transporter complement(1894727..1895929) Photobacterium profundum SS9 3121724 YP_133403.1 CDS PBPRB1743 NC_006371.1 1895932 1896780 R permease of ABC transporter complement(1895932..1896780) Photobacterium profundum SS9 3121709 YP_133404.1 CDS PBPRB1744 NC_006371.1 1896925 1897875 R glycine betaine-binding ABC transporter complement(1896925..1897875) Photobacterium profundum SS9 3121879 YP_133405.1 CDS PBPRB1745 NC_006371.1 1898022 1899728 R catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase complement(1898022..1899728) Photobacterium profundum SS9 3121754 YP_133406.1 CDS PBPRB1746 NC_006371.1 1900165 1901289 R betaine aldehyde dehydrogenase complement(1900165..1901289) Photobacterium profundum SS9 3121876 YP_133407.1 CDS PBPRB1747 NC_006371.1 1901332 1901910 R HTH-type; bet1; Repressor involved in choline regulation of the bet genes; transcriptional regulator BetI complement(1901332..1901910) Photobacterium profundum SS9 3121810 YP_133408.1 CDS PBPRB1748 NC_006371.1 1902621 1904669 D sensor histidine kinase/response regulator LuxN 1902621..1904669 Photobacterium profundum SS9 3121820 YP_133409.1 CDS PBPRB1749 NC_006371.1 1904723 1905904 R hypothetical protein complement(1904723..1905904) Photobacterium profundum SS9 3121707 YP_133410.1 CDS PBPRB1750 NC_006371.1 1906308 1908041 R hypothetical protein complement(1906308..1908041) Photobacterium profundum SS9 3121823 YP_133411.1 CDS PBPRB1751 NC_006371.1 1908254 1908601 R transposase complement(1908254..1908601) Photobacterium profundum SS9 3121834 YP_133412.1 CDS PBPRB1752 NC_006371.1 1909133 1909504 R hypothetical protein complement(1909133..1909504) Photobacterium profundum SS9 3121792 YP_133413.1 CDS PBPRB1753 NC_006371.1 1909519 1910181 R hypothetical protein complement(1909519..1910181) Photobacterium profundum SS9 3121741 YP_133414.1 CDS PBPRB1754 NC_006371.1 1910345 1916809 R hypothetical protein complement(1910345..1916809) Photobacterium profundum SS9 3121849 YP_133415.1 CDS PBPRB1755 NC_006371.1 1917353 1918918 R hypothetical protein complement(1917353..1918918) Photobacterium profundum SS9 3121844 YP_133416.1 CDS PBPRB1756 NC_006371.1 1919328 1920665 D hypothetical protein 1919328..1920665 Photobacterium profundum SS9 3121719 YP_133417.1 CDS PBPRB1757 NC_006371.1 1920672 1922921 D hypothetical protein 1920672..1922921 Photobacterium profundum SS9 3121824 YP_133418.1 CDS PBPRB1758 NC_006371.1 1922779 1924302 D ABC-transporter outer membrane protein 1922779..1924302 Photobacterium profundum SS9 3121768 YP_133419.1 CDS PBPRB1759 NC_006371.1 1924315 1925925 D hypothetical protein 1924315..1925925 Photobacterium profundum SS9 3121862 YP_133420.1 CDS PBPRB1760 NC_006371.1 1925922 1928063 D hypothetical protein 1925922..1928063 Photobacterium profundum SS9 3121779 YP_133421.1 CDS PBPRB1761 NC_006371.1 1928264 1929421 R ATP-dependent RNA helicase complement(1928264..1929421) Photobacterium profundum SS9 3121845 YP_133422.1 CDS PBPRB1762 NC_006371.1 1930056 1930373 D hypothetical protein 1930056..1930373 Photobacterium profundum SS9 3121873 YP_133423.1 CDS PBPRB1763 NC_006371.1 1930380 1930805 D hypothetical protein 1930380..1930805 Photobacterium profundum SS9 3121872 YP_133424.1 CDS PBPRB1764 NC_006371.1 1930968 1931339 R hypothetical protein complement(1930968..1931339) Photobacterium profundum SS9 3121783 YP_133425.1 CDS PBPRB1765 NC_006371.1 1931416 1931904 R hypothetical protein complement(1931416..1931904) Photobacterium profundum SS9 3121771 YP_133426.1 CDS PBPRB1766 NC_006371.1 1932199 1932981 D transposase 1932199..1932981 Photobacterium profundum SS9 3121802 YP_133427.1 CDS PBPRB1767 NC_006371.1 1933353 1933730 R hypothetical protein complement(1933353..1933730) Photobacterium profundum SS9 3121921 YP_133428.1 CDS PBPRB1769 NC_006371.1 1934406 1934720 D hypothetical protein 1934406..1934720 Photobacterium profundum SS9 3121722 YP_133429.1 CDS PBPRB1770 NC_006371.1 1934817 1936400 R hypothetical protein complement(1934817..1936400) Photobacterium profundum SS9 3121798 YP_133430.1 CDS PBPRB1771 NC_006371.1 1936948 1937388 D thioredoxin 1936948..1937388 Photobacterium profundum SS9 3121811 YP_133431.1 CDS PBPRB1772 NC_006371.1 1937662 1938897 R endoribonuclease L-PSP complement(1937662..1938897) Photobacterium profundum SS9 3121915 YP_133432.1 CDS PBPRB1773 NC_006371.1 1939216 1940289 D hypothetical protein 1939216..1940289 Photobacterium profundum SS9 3121904 YP_133433.1 CDS PBPRB1774 NC_006371.1 1940304 1940750 R hypothetical protein complement(1940304..1940750) Photobacterium profundum SS9 3121923 YP_133434.1 CDS PBPRB1775 NC_006371.1 1940838 1941539 R hypothetical protein complement(1940838..1941539) Photobacterium profundum SS9 3121858 YP_133435.1 CDS PBPRB1776 NC_006371.1 1941809 1942702 D transcriptional regulator 1941809..1942702 Photobacterium profundum SS9 3121931 YP_133436.1 CDS PBPRB1777 NC_006371.1 1942803 1943891 R transposase complement(1942803..1943891) Photobacterium profundum SS9 3121713 YP_133437.1 CDS PBPRB1778 NC_006371.1 1944232 1944681 D hypothetical protein 1944232..1944681 Photobacterium profundum SS9 3121805 YP_133438.1 CDS PBPRB1779 NC_006371.1 1945145 1945459 R cold shock protein complement(1945145..1945459) Photobacterium profundum SS9 3121903 YP_133439.1 CDS PBPRB1780 NC_006371.1 1945696 1947081 R transposase complement(1945696..1947081) Photobacterium profundum SS9 3121706 YP_133440.1 CDS PBPRB1781 NC_006371.1 1947257 1947727 D transposase 1947257..1947727 Photobacterium profundum SS9 3121822 YP_133441.1 CDS PBPRB1782 NC_006371.1 1947729 1948292 D transposase 1947729..1948292 Photobacterium profundum SS9 3121765 YP_133442.1 CDS PBPRB1783 NC_006371.1 1948663 1949010 R transposase complement(1948663..1949010) Photobacterium profundum SS9 3121874 YP_133443.1 CDS PBPRB1784 NC_006371.1 1949259 1950188 R reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase complement(1949259..1950188) Photobacterium profundum SS9 3121909 YP_133444.1 CDS PBPRB1785 NC_006371.1 1951038 1951862 R adenylosuccinate synthase complement(1951038..1951862) Photobacterium profundum SS9 3121817 YP_133445.1 CDS PBPRB1786 NC_006371.1 1952035 1952292 R adenylosuccinate synthase complement(1952035..1952292) Photobacterium profundum SS9 3121799 YP_133446.1 CDS PBPRB1787 NC_006371.1 1952394 1953284 D transcriptional regulator 1952394..1953284 Photobacterium profundum SS9 3121797 YP_133447.1 CDS PBPRB1788 NC_006371.1 1953385 1954668 R glycine betaine ABC transporter ATP-binding protein complement(1953385..1954668) Photobacterium profundum SS9 3121827 YP_133448.1 CDS PBPRB1789 NC_006371.1 1954670 1955560 R permease complement(1954670..1955560) Photobacterium profundum SS9 3121893 YP_133449.1 CDS PBPRB1790 NC_006371.1 1955621 1956619 R ABC transporter substrate-binding protein complement(1955621..1956619) Photobacterium profundum SS9 3121913 YP_133450.1 CDS PBPRB1791 NC_006371.1 1957013 1957822 D hypothetical protein 1957013..1957822 Photobacterium profundum SS9 3121747 YP_133451.1 CDS PBPRB1792 NC_006371.1 1957954 1959126 D hypothetical protein 1957954..1959126 Photobacterium profundum SS9 3121871 YP_133452.1 CDS PBPRB1793 NC_006371.1 1959116 1960183 D hypothetical protein 1959116..1960183 Photobacterium profundum SS9 3120710 YP_133453.1 CDS PBPRB1794 NC_006371.1 1960275 1961159 R hypothetical protein complement(1960275..1961159) Photobacterium profundum SS9 3121077 YP_133454.1 CDS PBPRB1795 NC_006371.1 1961433 1962668 R hypothetical protein complement(1961433..1962668) Photobacterium profundum SS9 3120969 YP_133455.1 CDS PBPRB1796 NC_006371.1 1962748 1963287 R hypothetical protein complement(1962748..1963287) Photobacterium profundum SS9 3120872 YP_133456.1 CDS PBPRB1797 NC_006371.1 1963312 1964508 R hypothetical protein complement(1963312..1964508) Photobacterium profundum SS9 3121121 YP_133457.1 CDS PBPRB1798 NC_006371.1 1964845 1965585 D hypothetical protein 1964845..1965585 Photobacterium profundum SS9 3121108 YP_133458.1 CDS PBPRB1799 NC_006371.1 1965654 1965911 D hypothetical protein 1965654..1965911 Photobacterium profundum SS9 3121095 YP_133459.1 CDS PBPRB1801 NC_006371.1 1967435 1967815 D hypothetical protein 1967435..1967815 Photobacterium profundum SS9 3121071 YP_133460.1 CDS PBPRB1802 NC_006371.1 1967841 1968719 R LysR family transcriptional regulator complement(1967841..1968719) Photobacterium profundum SS9 3121043 YP_133461.1 CDS PBPRB1803 NC_006371.1 1968909 1969784 D hypothetical protein 1968909..1969784 Photobacterium profundum SS9 3121039 YP_133462.1 CDS PBPRB1804 NC_006371.1 1969800 1970312 D hypothetical protein 1969800..1970312 Photobacterium profundum SS9 3121030 YP_133463.1 CDS PBPRB1805 NC_006371.1 1970761 1971048 D hypothetical protein 1970761..1971048 Photobacterium profundum SS9 3121023 YP_133464.1 CDS PBPRB1806 NC_006371.1 1971416 1971658 R hypothetical protein complement(1971416..1971658) Photobacterium profundum SS9 3121018 YP_133465.1 CDS PBPRB1807 NC_006371.1 1971863 1972819 R hypothetical protein complement(1971863..1972819) Photobacterium profundum SS9 3121016 YP_133466.1 CDS PBPRB1808 NC_006371.1 1974538 1975230 D lipoate-protein ligase A 1974538..1975230 Photobacterium profundum SS9 3121015 YP_133467.1 CDS PBPRB1809 NC_006371.1 1975257 1975643 R hypothetical protein complement(1975257..1975643) Photobacterium profundum SS9 3121011 YP_133468.1 CDS PBPRB1810 NC_006371.1 1975864 1976691 R cation-efflux family protein complement(1975864..1976691) Photobacterium profundum SS9 3121008 YP_133469.1 CDS PBPRB1811 NC_006371.1 1976959 1977192 R hypothetical protein complement(1976959..1977192) Photobacterium profundum SS9 3121002 YP_133470.1 CDS PBPRB1812 NC_006371.1 1977782 1978603 D hypothetical protein 1977782..1978603 Photobacterium profundum SS9 3121000 YP_133471.1 CDS PBPRB1813 NC_006371.1 1978686 1979768 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose-4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase 1978686..1979768 Photobacterium profundum SS9 3120999 YP_133472.1 CDS PBPRB1814 NC_006371.1 1979940 1980731 R iron-siderophoreabc-transporter ATP-binding protein complement(1979940..1980731) Photobacterium profundum SS9 3120984 YP_133473.1 CDS PBPRB1815 NC_006371.1 1980731 1981846 R permease complement(1980731..1981846) Photobacterium profundum SS9 3120983 YP_133474.1 CDS PBPRB1816 NC_006371.1 1981857 1982873 R permease complement(1981857..1982873) Photobacterium profundum SS9 3120980 YP_133475.1 CDS PBPRB1817 NC_006371.1 1983043 1983993 D hypothetical protein 1983043..1983993 Photobacterium profundum SS9 3120978 YP_133476.1 CDS PBPRB1818 NC_006371.1 1984126 1986498 R hypothetical protein complement(1984126..1986498) Photobacterium profundum SS9 3120970 YP_133477.1 CDS PBPRB1819 NC_006371.1 1986488 1992994 R peptide synthetase complement(1986488..1992994) Photobacterium profundum SS9 3120963 YP_133478.1 CDS PBPRB1820 NC_006371.1 1993058 1993747 R catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin; 2,3-dihydroxybenzoate-2,3-dehydrogenase complement(1993058..1993747) Photobacterium profundum SS9 3120961 YP_133479.1 CDS PBPRB1821 NC_006371.1 1993831 1996989 R hypothetical protein complement(1993831..1996989) Photobacterium profundum SS9 3120950 YP_133480.1 CDS PBPRB1822 NC_006371.1 1997079 1997951 R 2,3-dihydro-2,3-dihydroxybenzoatesynthetase, isochorismatase complement(1997079..1997951) Photobacterium profundum SS9 3120936 YP_133481.1 CDS entE NC_006371.1 1997954 1999609 R bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate; enterobactin synthase subunit E complement(1997954..1999609) Photobacterium profundum SS9 3120930 YP_133482.1 CDS PBPRB1824 NC_006371.1 1999606 2000805 R synthesizes isochorismate acid from chorismate; isochorismate synthase complement(1999606..2000805) Photobacterium profundum SS9 3120920 YP_133483.1 CDS PBPRB1825 NC_006371.1 2001039 2002988 R hypothetical protein complement(2001039..2002988) Photobacterium profundum SS9 3120915 YP_133484.1 CDS PBPRB1826 NC_006371.1 2003183 2004319 R hypothetical protein complement(2003183..2004319) Photobacterium profundum SS9 3120889 YP_133485.1 CDS PBPRB1827 NC_006371.1 2004491 2005183 R phosphopantetheinyl transferase complement(2004491..2005183) Photobacterium profundum SS9 3120868 YP_133486.1 CDS PBPRB1828 NC_006371.1 2005452 2005865 D transposase 2005452..2005865 Photobacterium profundum SS9 3120861 YP_133487.1 CDS PBPRB1829 NC_006371.1 2006086 2006412 D transposase 2006086..2006412 Photobacterium profundum SS9 3120833 YP_133488.1 CDS PBPRB1838 NC_006371.1 2013044 2014861 R polyhydroxyalkanoic acid synthase complement(2013044..2014861) Photobacterium profundum SS9 3120698 YP_133489.1 CDS PBPRB1839 NC_006371.1 2014927 2015280 R hypothetical protein complement(2014927..2015280) Photobacterium profundum SS9 3120517 YP_133490.1 CDS PBPRB1840 NC_006371.1 2015376 2016470 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase complement(2015376..2016470) Photobacterium profundum SS9 3120593 YP_133491.2 CDS PBPRB1841 NC_006371.1 2016641 2017381 R catalyzes the conversion of 3-hydroxyacyl-CoA to 3-oxyacyl-CoA; acetoacetyl-CoA reductase complement(2016641..2017381) Photobacterium profundum SS9 3120588 YP_133492.1 CDS PBPRB1842 NC_006371.1 2018517 2019542 D MoxR-like ATPase 2018517..2019542 Photobacterium profundum SS9 3120683 YP_133493.1 CDS PBPRB1843 NC_006371.1 2019587 2020525 D hypothetical protein 2019587..2020525 Photobacterium profundum SS9 3120538 YP_133494.1 CDS PBPRB1844 NC_006371.1 2020518 2021090 D hypothetical protein 2020518..2021090 Photobacterium profundum SS9 3120676 YP_133495.1 CDS PBPRB1845 NC_006371.1 2021083 2022048 D hypothetical protein 2021083..2022048 Photobacterium profundum SS9 3120700 YP_133496.1 CDS PBPRB1846 NC_006371.1 2022041 2023987 D hypothetical protein 2022041..2023987 Photobacterium profundum SS9 3120558 YP_133497.1 CDS PBPRB1847 NC_006371.1 2023965 2025692 D hypothetical protein 2023965..2025692 Photobacterium profundum SS9 3120364 YP_133498.1 CDS PBPRB1848 NC_006371.1 2025969 2027204 D involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 2025969..2027204 Photobacterium profundum SS9 3120528 YP_133499.1 CDS PBPRB1849 NC_006371.1 2027577 2028851 D hypothetical protein 2027577..2028851 Photobacterium profundum SS9 3120379 YP_133500.1 CDS PBPRB1850 NC_006371.1 2028839 2029924 D amino acid racemase 2028839..2029924 Photobacterium profundum SS9 3120426 YP_133501.1 CDS PBPRB1851 NC_006371.1 2030335 2031531 R hypothetical protein complement(2030335..2031531) Photobacterium profundum SS9 3120464 YP_133502.1 CDS PBPRB1852 NC_006371.1 2032037 2032372 R hypothetical protein complement(2032037..2032372) Photobacterium profundum SS9 3120563 YP_133503.1 CDS PBPRB1853 NC_006371.1 2032741 2033982 R NifS-related protein complement(2032741..2033982) Photobacterium profundum SS9 3120585 YP_133504.1 CDS PBPRB1854 NC_006371.1 2033966 2034622 R hypothetical protein complement(2033966..2034622) Photobacterium profundum SS9 3120654 YP_133505.1 CDS PBPRB1855 NC_006371.1 2035121 2035492 R hypothetical protein complement(2035121..2035492) Photobacterium profundum SS9 3120358 YP_133506.1 CDS PBPRB1856 NC_006371.1 2035870 2036640 R permease complement(2035870..2036640) Photobacterium profundum SS9 3120448 YP_133507.1 CDS PBPRB1857 NC_006371.1 2036633 2037322 R hypothetical protein complement(2036633..2037322) Photobacterium profundum SS9 3120532 YP_133508.1 CDS PBPRB1858 NC_006371.1 2037558 2037767 R cold shock-like protein complement(2037558..2037767) Photobacterium profundum SS9 3120530 YP_133509.1 CDS PBPRB1859 NC_006371.1 2038237 2038797 R hypothetical protein complement(2038237..2038797) Photobacterium profundum SS9 3120509 YP_133510.1 CDS PBPRB1860 NC_006371.1 2038905 2039825 R transcriptional regulator complement(2038905..2039825) Photobacterium profundum SS9 3120631 YP_133511.1 CDS PBPRB1861 NC_006371.1 2039906 2041342 D hypothetical protein 2039906..2041342 Photobacterium profundum SS9 3120653 YP_133512.1 CDS PBPRB1862 NC_006371.1 2041354 2042499 D multidrug resistance protein 2041354..2042499 Photobacterium profundum SS9 3120339 YP_133513.1 CDS PBPRB1863 NC_006371.1 2042512 2044050 D multidrug transport protein 2042512..2044050 Photobacterium profundum SS9 3120478 YP_133514.1 CDS PBPRB1864 NC_006371.1 2044343 2044975 R hypothetical protein complement(2044343..2044975) Photobacterium profundum SS9 3120343 YP_133515.1 CDS PBPRB1865 NC_006371.1 2045104 2046606 R transport protein complement(2045104..2046606) Photobacterium profundum SS9 3120440 YP_133516.1 CDS PBPRB1866 NC_006371.1 2047236 2048639 D methyl-accepting chemotaxis protein 2047236..2048639 Photobacterium profundum SS9 3120431 YP_133517.1 CDS PBPRB1867 NC_006371.1 2048739 2049188 R hypothetical protein complement(2048739..2049188) Photobacterium profundum SS9 3120402 YP_133518.1 CDS PBPRB1868 NC_006371.1 2049559 2051556 D chemotaxis transducer 2049559..2051556 Photobacterium profundum SS9 3120384 YP_133519.1 CDS PBPRB1869 NC_006371.1 2051656 2053389 R methyl-accepting chemotaxis protein complement(2051656..2053389) Photobacterium profundum SS9 3120416 YP_133520.1 CDS mglC NC_006371.1 2053465 2054475 R ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; beta-methylgalactoside transporter inner membrane component complement(2053465..2054475) Photobacterium profundum SS9 3120554 YP_133521.1 CDS PBPRB1871 NC_006371.1 2054488 2055963 R with MglBC transports galactose or methyl galactoside into the cell; contains 2 ATP binding domains; galactose/methyl galaxtoside transporter ATP-binding protein complement(2054488..2055963) Photobacterium profundum SS9 3120505 YP_133522.1 CDS PBPRB1872 NC_006371.1 2056066 2057043 R galactoside ABC transporter, periplasmic D-galactose/D-glucose-binding protein complement(2056066..2057043) Photobacterium profundum SS9 3120639 YP_133523.1 CDS PBPRB1873 NC_006371.1 2057876 2058361 D acyl-CoA thioester hydrolase 2057876..2058361 Photobacterium profundum SS9 3120420 YP_133524.1 CDS PBPRB1874 NC_006371.1 2058462 2059646 R catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase complement(2058462..2059646) Photobacterium profundum SS9 3120501 YP_133525.1 CDS PBPRB1875 NC_006371.1 2059773 2060456 R transcriptional regulatory protein complement(2059773..2060456) Photobacterium profundum SS9 3120325 YP_133526.1 CDS PBPRB1876 NC_006371.1 2060663 2061097 R C4-dicarboxylate transport system, periplasmic component complement(2060663..2061097) Photobacterium profundum SS9 3120552 YP_133527.1 CDS PBPRB1877 NC_006371.1 2061358 2061717 R dicarboxylate-binding periplasmic protein complement(2061358..2061717) Photobacterium profundum SS9 3120424 YP_133528.1 CDS PBPRB1878 NC_006371.1 2061946 2062455 D small integral C4-dicarboxylate membrane transport protein 2061946..2062455 Photobacterium profundum SS9 3120457 YP_133529.1 CDS PBPRB1879 NC_006371.1 2062481 2063782 D C4-dicarboxylate transport system, integral membrane protein 2062481..2063782 Photobacterium profundum SS9 3120492 YP_133530.1 CDS PBPRB1880 NC_006371.1 2063865 2065328 D mannonate oxidoreductase 2063865..2065328 Photobacterium profundum SS9 3120652 YP_133531.1 CDS PBPRB1882 NC_006371.1 2066808 2067779 D carbohydrate kinase 2066808..2067779 Photobacterium profundum SS9 3120640 YP_133532.1 CDS PBPRB1883 NC_006371.1 2067793 2068419 D catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 2067793..2068419 Photobacterium profundum SS9 3120466 YP_133533.1 CDS PBPRB1884 NC_006371.1 2068704 2069210 D hypothetical protein 2068704..2069210 Photobacterium profundum SS9 3120536 YP_133534.1 CDS PBPRB1885 NC_006371.1 2069337 2069729 R hypothetical protein complement(2069337..2069729) Photobacterium profundum SS9 3120648 YP_133535.1 CDS PBPRB1886 NC_006371.1 2070008 2070475 R hypothetical protein complement(2070008..2070475) Photobacterium profundum SS9 3120690 YP_133536.1 CDS PBPRB1887 NC_006371.1 2070690 2072093 R C4-dicarboxylate transport protein complement(2070690..2072093) Photobacterium profundum SS9 3120504 YP_133537.1 CDS PBPRB1888 NC_006371.1 2072096 2072656 R C4-dicarboxylate transporter, small permease component complement(2072096..2072656) Photobacterium profundum SS9 3120540 YP_133538.1 CDS PBPRB1889 NC_006371.1 2072714 2073700 R C4-dicarboxylate-binding periplasmic protein complement(2072714..2073700) Photobacterium profundum SS9 3120447 YP_133539.1 CDS PBPRB1890 NC_006371.1 2074108 2074716 R hypothetical protein complement(2074108..2074716) Photobacterium profundum SS9 3120637 YP_133540.1 CDS PBPRB1891 NC_006371.1 2074797 2075717 D transcriptional regulator 2074797..2075717 Photobacterium profundum SS9 3120355 YP_133541.1 CDS PBPRB1892 NC_006371.1 2075806 2077788 R hypothetical protein complement(2075806..2077788) Photobacterium profundum SS9 3120369 YP_133542.1 CDS PBPRB1893 NC_006371.1 2078134 2078796 D hypothetical protein 2078134..2078796 Photobacterium profundum SS9 3120680 YP_133543.1 CDS PBPRB1894 NC_006371.1 2079011 2081977 D hypothetical protein 2079011..2081977 Photobacterium profundum SS9 3120407 YP_133544.1 CDS PBPRB1895 NC_006371.1 2082919 2084274 R ferredoxin oxidoreductase complement(2082919..2084274) Photobacterium profundum SS9 3120663 YP_133545.1 CDS PBPRB1896 NC_006371.1 2084441 2086105 R catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase complement(2084441..2086105) Photobacterium profundum SS9 3120642 YP_133546.1 CDS PBPRB1897 NC_006371.1 2086293 2087861 R Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcription regulator complement(2086293..2087861) Photobacterium profundum SS9 3120599 YP_133547.1 CDS PBPRB1899 NC_006371.1 2089371 2090273 D hypothetical protein 2089371..2090273 Photobacterium profundum SS9 3120529 YP_133548.1 CDS PBPRB1900 NC_006371.1 2090375 2091613 D hypothetical protein 2090375..2091613 Photobacterium profundum SS9 3120573 YP_133549.1 CDS PBPRB1901 NC_006371.1 2091872 2092798 R glycine cleavage operon activator complement(2091872..2092798) Photobacterium profundum SS9 3120436 YP_133550.1 CDS PBPRB1902 NC_006371.1 2092891 2093814 D hypothetical protein 2092891..2093814 Photobacterium profundum SS9 3120616 YP_133551.1 CDS PBPRB1903 NC_006371.1 2094180 2095859 D hypothetical protein 2094180..2095859 Photobacterium profundum SS9 3120580 YP_133552.1 CDS PBPRB1904 NC_006371.1 2096141 2098144 R ferrous ion transport protein B complement(2096141..2098144) Photobacterium profundum SS9 3120586 YP_133553.1 CDS PBPRB1905 NC_006371.1 2098302 2098586 R hypothetical protein complement(2098302..2098586) Photobacterium profundum SS9 3120488 YP_133554.1 CDS PBPRB1906 NC_006371.1 2099081 2100343 R ABC-type sugar transport system, periplasmic component complement(2099081..2100343) Photobacterium profundum SS9 3120572 YP_133555.1 CDS PBPRB1907 NC_006371.1 2100428 2101867 R Signal transduction histidine kinase complement(2100428..2101867) Photobacterium profundum SS9 3120617 YP_133556.1 CDS PBPRB1908 NC_006371.1 2102019 2102744 R DNA-binding response regulator complement(2102019..2102744) Photobacterium profundum SS9 3120645 YP_133557.1 CDS PBPRB1909 NC_006371.1 2103416 2103772 D ribosomal subunit interface protein 2103416..2103772 Photobacterium profundum SS9 3120425 YP_133558.1 CDS PBPRB1910 NC_006371.1 2103908 2104357 R Lrp/AsnC-like transcriptional regulator complement(2103908..2104357) Photobacterium profundum SS9 3120441 YP_133559.1 CDS PBPRB1911 NC_006371.1 2104574 2105452 D hypothetical protein 2104574..2105452 Photobacterium profundum SS9 3120592 YP_133560.1 CDS PBPRB1912 NC_006371.1 2105599 2106954 D sensor protein 2105599..2106954 Photobacterium profundum SS9 3120340 YP_133561.1 CDS PBPRB1913 NC_006371.1 2106951 2107250 D sensor protein 2106951..2107250 Photobacterium profundum SS9 3120371 YP_133562.1 CDS PBPRB1914 NC_006371.1 2107261 2107983 D two component transcriptional regulator 2107261..2107983 Photobacterium profundum SS9 3120553 YP_133563.1 CDS PBPRB1915 NC_006371.1 2108142 2109356 D resistance protein, yhjX 2108142..2109356 Photobacterium profundum SS9 3120400 YP_133564.1 CDS PBPRB1916 NC_006371.1 2109446 2110210 R hypothetical protein complement(2109446..2110210) Photobacterium profundum SS9 3120470 YP_133565.1 CDS PBPRB1917 NC_006371.1 2110572 2111963 R amino acid permease complement(2110572..2111963) Photobacterium profundum SS9 3120460 YP_133566.1 CDS PBPRB1918 NC_006371.1 2112280 2113194 D reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 2112280..2113194 Photobacterium profundum SS9 3120458 YP_133567.1 CDS PBPRB1919 NC_006371.1 2113285 2113908 D transcriptional regulator 2113285..2113908 Photobacterium profundum SS9 3120468 YP_133568.1 CDS PBPRB1920 NC_006371.1 2113982 2114236 D hypothetical protein 2113982..2114236 Photobacterium profundum SS9 3120609 YP_133569.1 CDS PBPRB1921 NC_006371.1 2114326 2115372 D catalyzes the formation of putrescine from carbamoyl-putrescine during agmatine degradation; putrescine carbamoyltransferase 2114326..2115372 Photobacterium profundum SS9 3120399 YP_133570.1 CDS PBPRB1923 NC_006371.1 2116364 2116762 R lipoprotein complement(2116364..2116762) Photobacterium profundum SS9 3120578 YP_133571.1 CDS PBPRB1924 NC_006371.1 2117137 2118138 D ornithine carbamoyltransferase 2117137..2118138 Photobacterium profundum SS9 3120581 YP_133572.1 CDS PBPRB1925 NC_006371.1 2118893 2119597 D hypothetical protein 2118893..2119597 Photobacterium profundum SS9 3120655 YP_133573.1 CDS PBPRB1926 NC_006371.1 2120102 2120407 R hypothetical protein complement(2120102..2120407) Photobacterium profundum SS9 3120493 YP_133574.1 CDS PBPRB1927 NC_006371.1 2120869 2121255 R transposase complement(2120869..2121255) Photobacterium profundum SS9 3120438 YP_133575.1 CDS PBPRB1928 NC_006371.1 2121649 2122290 D hypothetical protein 2121649..2122290 Photobacterium profundum SS9 3120575 YP_133576.1 CDS PBPRB1929 NC_006371.1 2122849 2123058 R cold shock-like protein complement(2122849..2123058) Photobacterium profundum SS9 3120535 YP_133577.1 CDS PBPRB1930 NC_006371.1 2123387 2123578 R hypothetical protein complement(2123387..2123578) Photobacterium profundum SS9 3120351 YP_133578.1 CDS PBPRB1931 NC_006371.1 2123686 2124681 R lysophospholipase L2 complement(2123686..2124681) Photobacterium profundum SS9 3120387 YP_133579.1 CDS PBPRB1932 NC_006371.1 2124691 2125572 R hypothetical protein complement(2124691..2125572) Photobacterium profundum SS9 3120388 YP_133580.1 CDS PBPRB1933 NC_006371.1 2125900 2126247 R YjgF family translation initiation inhibitor complement(2125900..2126247) Photobacterium profundum SS9 3120668 YP_133581.1 CDS PBPRB1934 NC_006371.1 2126476 2126826 D cytochrome c 2126476..2126826 Photobacterium profundum SS9 3120411 YP_133582.1 CDS PBPRB1935 NC_006371.1 2126970 2127443 R acetyltransferase complement(2126970..2127443) Photobacterium profundum SS9 3120393 YP_133583.1 CDS PBPRB1936 NC_006371.1 2127887 2129854 R hypothetical protein complement(2127887..2129854) Photobacterium profundum SS9 3120370 YP_133584.1 CDS PBPRB1937 NC_006371.1 2129983 2130522 R hypothetical protein complement(2129983..2130522) Photobacterium profundum SS9 3120596 YP_133585.1 CDS PBPRB1938 NC_006371.1 2130558 2131178 R hypothetical protein complement(2130558..2131178) Photobacterium profundum SS9 3120450 YP_133586.1 CDS PBPRB1939 NC_006371.1 2131374 2132246 R transcriptional regulator complement(2131374..2132246) Photobacterium profundum SS9 3120345 YP_133587.1 CDS vmrA NC_006371.1 2132359 2133726 D sodium/drug antiporter; functions as a Na(+)-driven Na(+)/drug antiporter; member of multidrug and toxic compound extrusion (MATE) family; extrudes acriflavines and other compounds by utilizing the sodium gradient; multidrug efflux pump VmrA 2132359..2133726 Photobacterium profundum SS9 3120469 YP_133588.1 CDS PBPRB1941 NC_006371.1 2133898 2135370 R hypothetical protein complement(2133898..2135370) Photobacterium profundum SS9 3120564 YP_133589.1 CDS PBPRB1942 NC_006371.1 2136240 2137157 D AraC family transcriptional regulator 2136240..2137157 Photobacterium profundum SS9 3120547 YP_133590.1 CDS PBPRB1943 NC_006371.1 2137458 2138039 D hypothetical protein 2137458..2138039 Photobacterium profundum SS9 3120565 YP_133591.1 CDS PBPRB1944 NC_006371.1 2138625 2139593 D hypothetical protein 2138625..2139593 Photobacterium profundum SS9 3120672 YP_133592.1 CDS PBPRB1945 NC_006371.1 2139590 2140492 D hypothetical protein 2139590..2140492 Photobacterium profundum SS9 3120650 YP_133593.1 CDS PBPRB1946 NC_006371.1 2140480 2141274 D membrane channel protein 2140480..2141274 Photobacterium profundum SS9 3120409 YP_133594.1 CDS PBPRB1949 NC_006371.1 2142594 2143895 D hypothetical protein 2142594..2143895 Photobacterium profundum SS9 3120363 YP_133595.1 CDS PBPRB1950 NC_006371.1 2144574 2147255 D hypothetical protein 2144574..2147255 Photobacterium profundum SS9 3120476 YP_133596.1 CDS PBPRB1951 NC_006371.1 2148799 2150436 D methyl-accepting chemotaxis protein 2148799..2150436 Photobacterium profundum SS9 3120481 YP_133597.1 CDS alr NC_006371.1 2150465 2151682 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 2150465..2151682 Photobacterium profundum SS9 3120439 YP_133598.1 CDS PBPRB1953 NC_006371.1 2152028 2152300 R hypothetical protein complement(2152028..2152300) Photobacterium profundum SS9 3120512 YP_133599.1 CDS PBPRB1954 NC_006371.1 2152687 2153178 D transcriptional regulator 2152687..2153178 Photobacterium profundum SS9 3120647 YP_133600.1 CDS PBPRB1955 NC_006371.1 2153352 2153597 D hypothetical protein 2153352..2153597 Photobacterium profundum SS9 3120602 YP_133601.1 CDS PBPRB1956 NC_006371.1 2153869 2154390 D hypothetical protein 2153869..2154390 Photobacterium profundum SS9 3120614 YP_133602.1 CDS PBPRB1957 NC_006371.1 2154492 2154986 D hypothetical protein 2154492..2154986 Photobacterium profundum SS9 3120520 YP_133603.1 CDS PBPRB1958 NC_006371.1 2155247 2156128 D hypothetical protein 2155247..2156128 Photobacterium profundum SS9 3120660 YP_133604.1 CDS PBPRB1959 NC_006371.1 2156286 2156579 D hypothetical protein 2156286..2156579 Photobacterium profundum SS9 3120600 YP_133605.1 CDS PBPRB1960 NC_006371.1 2157035 2157976 D lactonizing lipase 2157035..2157976 Photobacterium profundum SS9 3120516 YP_133606.1 CDS PBPRB1961 NC_006371.1 2157979 2158911 D acts as a molecular chaperone to fold and export lipase A; lipase chaperone 2157979..2158911 Photobacterium profundum SS9 3120561 YP_133607.1 CDS PBPRB1962 NC_006371.1 2159245 2159586 R AraC family transcriptional regulator complement(2159245..2159586) Photobacterium profundum SS9 3120568 YP_133608.1 CDS PBPRB1963 NC_006371.1 2159849 2160274 D hypothetical protein 2159849..2160274 Photobacterium profundum SS9 3120456 YP_133609.1 CDS PBPRB1964 NC_006371.1 2160378 2161436 R transposase complement(2160378..2161436) Photobacterium profundum SS9 3120381 YP_133610.1 CDS PBPRB1965 NC_006371.1 2161610 2162914 R PAP2 family protein complement(2161610..2162914) Photobacterium profundum SS9 3120567 YP_133611.1 CDS PBPRB1966 NC_006371.1 2162983 2164284 R hypothetical protein complement(2162983..2164284) Photobacterium profundum SS9 3120679 YP_133612.1 CDS PBPRB1967 NC_006371.1 2164390 2165160 R hypothetical protein complement(2164390..2165160) Photobacterium profundum SS9 3120557 YP_133613.1 CDS PBPRB1968 NC_006371.1 2165592 2166458 D hypothetical protein 2165592..2166458 Photobacterium profundum SS9 3120630 YP_133614.1 CDS PBPRB1969 NC_006371.1 2166933 2167241 R hypothetical protein complement(2166933..2167241) Photobacterium profundum SS9 3120414 YP_133615.1 CDS PBPRB1970 NC_006371.1 2168138 2168725 D hypothetical protein 2168138..2168725 Photobacterium profundum SS9 3120361 YP_133616.1 CDS PBPRB1971 NC_006371.1 2168772 2169248 R hypothetical protein complement(2168772..2169248) Photobacterium profundum SS9 3120521 YP_133617.1 CDS PBPRB1972 NC_006371.1 2169245 2169760 R hypothetical protein complement(2169245..2169760) Photobacterium profundum SS9 3120454 YP_133618.1 CDS PBPRB1973 NC_006371.1 2169757 2170260 R hypothetical protein complement(2169757..2170260) Photobacterium profundum SS9 3120080 YP_133619.1 CDS PBPRB1974 NC_006371.1 2170310 2171506 R hypothetical protein complement(2170310..2171506) Photobacterium profundum SS9 3120444 YP_133620.1 CDS PBPRB1975 NC_006371.1 2171696 2172280 R hypothetical protein complement(2171696..2172280) Photobacterium profundum SS9 3120410 YP_133621.1 CDS PBPRB1976 NC_006371.1 2172530 2172823 R hypothetical protein complement(2172530..2172823) Photobacterium profundum SS9 3120427 YP_133622.1 CDS PBPRB1977 NC_006371.1 2174012 2175364 R hypothetical protein complement(2174012..2175364) Photobacterium profundum SS9 3120687 YP_133623.1 CDS PBPRB1978 NC_006371.1 2175513 2176259 R hypothetical protein complement(2175513..2176259) Photobacterium profundum SS9 3120463 YP_133624.1 CDS PBPRB1979 NC_006371.1 2176313 2176705 R hypothetical protein complement(2176313..2176705) Photobacterium profundum SS9 3120422 YP_133625.1 CDS PBPRB1980 NC_006371.1 2176808 2177323 R hypothetical protein complement(2176808..2177323) Photobacterium profundum SS9 3120545 YP_133626.1 CDS PBPRB1981 NC_006371.1 2177657 2177905 R hypothetical protein complement(2177657..2177905) Photobacterium profundum SS9 3120524 YP_133627.1 CDS PBPRB1982 NC_006371.1 2178033 2178659 R thiol-disulfide isomerase complement(2178033..2178659) Photobacterium profundum SS9 3120446 YP_133628.1 CDS PBPRB1983 NC_006371.1 2178945 2179211 D hypothetical protein 2178945..2179211 Photobacterium profundum SS9 3120657 YP_133629.1 CDS PBPRB1984 NC_006371.1 2179247 2180029 D transposase 2179247..2180029 Photobacterium profundum SS9 3120626 YP_133630.1 CDS PBPRB1985 NC_006371.1 2180749 2181432 R hypothetical protein complement(2180749..2181432) Photobacterium profundum SS9 3120494 YP_133631.1 CDS PBPRB1986 NC_006371.1 2181740 2182669 R lipid A biosynthesis lauroyl acyltransferase complement(2181740..2182669) Photobacterium profundum SS9 3120560 YP_133632.1 CDS PBPRB1987 NC_006371.1 2183040 2185952 R hypothetical protein complement(2183040..2185952) Photobacterium profundum SS9 3120354 YP_133633.1 CDS PBPRB1988 NC_006371.1 2186591 2186797 R hypothetical protein complement(2186591..2186797) Photobacterium profundum SS9 3120597 YP_133634.1 CDS PBPRB1989 NC_006371.1 2186901 2187665 R hypothetical protein complement(2186901..2187665) Photobacterium profundum SS9 3120341 YP_133635.1 CDS PBPRB1990 NC_006371.1 2187790 2188161 R hypothetical protein complement(2187790..2188161) Photobacterium profundum SS9 3120584 YP_133636.1 CDS PBPRB1991 NC_006371.1 2189584 2190138 R hypothetical protein complement(2189584..2190138) Photobacterium profundum SS9 3120574 YP_133637.1 CDS PBPRB1992 NC_006371.1 2190145 2191053 R hypothetical protein complement(2190145..2191053) Photobacterium profundum SS9 3120474 YP_133638.1 CDS PBPRB1993 NC_006371.1 2191164 2192111 R hypothetical protein complement(2191164..2192111) Photobacterium profundum SS9 3120507 YP_133639.1 CDS PBPRB1994 NC_006371.1 2192115 2194898 R hypothetical protein complement(2192115..2194898) Photobacterium profundum SS9 3120484 YP_133640.1 CDS PBPRB1995 NC_006371.1 2195036 2196031 R hypothetical protein complement(2195036..2196031) Photobacterium profundum SS9 3120537 YP_133641.1 CDS PBPRB1996 NC_006371.1 2196271 2197836 D hypothetical protein 2196271..2197836 Photobacterium profundum SS9 3120471 YP_133642.1 CDS PBPRB1997 NC_006371.1 2198590 2200086 R sodium/proline symporter complement(2198590..2200086) Photobacterium profundum SS9 3120583 YP_133643.1 CDS PBPRB1998 NC_006371.1 2200249 2200944 R hypothetical protein complement(2200249..2200944) Photobacterium profundum SS9 3120556 YP_133644.1 CDS PBPRB1999 NC_006371.1 2200979 2204104 R proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(2200979..2204104) Photobacterium profundum SS9 3120576 YP_133645.1 CDS PBPRB2000 NC_006371.1 2204097 2204483 D hypothetical protein 2204097..2204483 Photobacterium profundum SS9 3120489 YP_133646.1 CDS PBPRB2001 NC_006371.1 2204527 2205324 R AraC family transcriptional regulator complement(2204527..2205324) Photobacterium profundum SS9 3120434 YP_133647.1 CDS PBPRB2002 NC_006371.1 2206252 2207205 D hypothetical protein 2206252..2207205 Photobacterium profundum SS9 3120550 YP_133648.1 CDS PBPRB2003 NC_006371.1 2207220 2208194 R transcriptional regulator complement(2207220..2208194) Photobacterium profundum SS9 3120598 YP_133649.1 CDS PBPRB2004 NC_006371.1 2208507 2209859 R maltoporin complement(2208507..2209859) Photobacterium profundum SS9 3120604 YP_133650.1 CDS PBPRB2005 NC_006371.1 2210272 2210583 R PTS system, cellobiose-specific IIA component complement(2210272..2210583) Photobacterium profundum SS9 3120659 YP_133651.1 CDS PBPRB2006 NC_006371.1 2210749 2212167 R glycosyl hydrolase complement(2210749..2212167) Photobacterium profundum SS9 3120475 YP_133652.1 CDS PBPRB2007 NC_006371.1 2212219 2213541 R phosphotransferase system cellobiose-specific component IIC complement(2212219..2213541) Photobacterium profundum SS9 3120367 YP_133653.1 CDS PBPRB2008 NC_006371.1 2213604 2213984 R PTS system cellobiose-specific IIB component complement(2213604..2213984) Photobacterium profundum SS9 3120522 YP_133654.1 CDS PBPRB2009 NC_006371.1 2214369 2215679 D phosphotransferase systemcellobiose-specific component IIC 2214369..2215679 Photobacterium profundum SS9 3120421 YP_133655.1 CDS PBPRB2010 NC_006371.1 2215834 2217246 R efflux family protein complement(2215834..2217246) Photobacterium profundum SS9 3120467 YP_133656.1 CDS PBPRB2011 NC_006371.1 2217413 2217934 R hypothetical protein complement(2217413..2217934) Photobacterium profundum SS9 3120497 YP_133657.1 CDS PBPRB2012 NC_006371.1 2218309 2219211 D transcriptional regulator 2218309..2219211 Photobacterium profundum SS9 3119996 YP_133658.1 CDS PBPRB2013 NC_006371.1 2219341 2220528 D hypothetical protein 2219341..2220528 Photobacterium profundum SS9 3120413 YP_133659.1 CDS PBPRB2014 NC_006371.1 2221055 2221741 D transcriptional regulator 2221055..2221741 Photobacterium profundum SS9 3120608 YP_133660.1 CDS PBPRB2015 NC_006371.1 2222206 2222841 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase complement(2222206..2222841) Photobacterium profundum SS9 3120651 YP_133661.1 CDS PBPRB2016 NC_006371.1 2223280 2225139 D C4-dicarboxylate transporter signal transduction histidine kinase 2223280..2225139 Photobacterium profundum SS9 3120510 YP_133662.1 CDS PBPRB2017 NC_006371.1 2225136 2226488 D C4-dicarboxylate transporttranscriptional regulatory protein 2225136..2226488 Photobacterium profundum SS9 3120635 YP_133663.1 CDS PBPRB2018 NC_006371.1 2226993 2228918 D hypothetical protein 2226993..2228918 Photobacterium profundum SS9 3120347 YP_133664.1 CDS PBPRB2019 NC_006371.1 2228984 2230645 R hypothetical protein complement(2228984..2230645) Photobacterium profundum SS9 3120613 YP_133665.1 CDS PBPRB2020 NC_006371.1 2230881 2231174 D hypothetical protein 2230881..2231174 Photobacterium profundum SS9 3120607 YP_133666.1 CDS PBPRB2021 NC_006371.1 2231213 2231608 R hypothetical protein complement(2231213..2231608) Photobacterium profundum SS9 3120344 YP_133667.1 CDS PBPRB2022 NC_006371.1 2231869 2232609 R hydrolase complement(2231869..2232609) Photobacterium profundum SS9 3120477 YP_133668.1 CDS PBPRB2023 NC_006371.1 2232622 2234754 R hypothetical protein complement(2232622..2234754) Photobacterium profundum SS9 3120644 YP_133669.1 CDS PBPRB2024 NC_006371.1 2234897 2235871 R ParB family protein complement(2234897..2235871) Photobacterium profundum SS9 3120627 YP_133670.1 CDS PBPRB2025 NC_006371.1 2235880 2237067 R ParA family protein complement(2235880..2237067) Photobacterium profundum SS9 3120503 PBPRA0072 tRNA PBPRA0072 NC_006370.1 76907 76982 D tRNA-Glu 76907..76982 Photobacterium profundum SS9 3122769 PBPRA0073 tRNA PBPRA0073 NC_006370.1 77016 77091 D tRNA-Lys 77016..77091 Photobacterium profundum SS9 3123357 PBPRA0074 tRNA PBPRA0074 NC_006370.1 77159 77234 D tRNA-Val 77159..77234 Photobacterium profundum SS9 3122453 PBPRA0077 tRNA PBPRA0077 NC_006370.1 81008 81084 D tRNA-Asp 81008..81084 Photobacterium profundum SS9 3124819 PBPRA0093 tRNA PBPRA0093 NC_006370.1 96967 97043 D tRNA-Arg 96967..97043 Photobacterium profundum SS9 3122459 PBPRA0094 tRNA PBPRA0094 NC_006370.1 97078 97153 D tRNA-His 97078..97153 Photobacterium profundum SS9 3123144 PBPRA0095 tRNA PBPRA0095 NC_006370.1 97220 97296 D tRNA-Pro 97220..97296 Photobacterium profundum SS9 3122253 PBPRA0096 tRNA PBPRA0096 NC_006370.1 97306 97381 D tRNA-His 97306..97381 Photobacterium profundum SS9 3125512 PBPRA0097 tRNA PBPRA0097 NC_006370.1 97433 97509 D tRNA-Pro 97433..97509 Photobacterium profundum SS9 3122458 PBPRA0102 tRNA PBPRA0102 NC_006370.1 103843 103919 D tRNA-Trp 103843..103919 Photobacterium profundum SS9 3124690 PBPRA0360 tRNA PBPRA0360 NC_006370.1 362841 362916 D tRNA-Glu 362841..362916 Photobacterium profundum SS9 3124631 PBPRA0361 tRNA PBPRA0361 NC_006370.1 362950 363025 D tRNA-Lys 362950..363025 Photobacterium profundum SS9 3124085 PBPRA0362 tRNA PBPRA0362 NC_006370.1 363092 363167 D tRNA-Val 363092..363167 Photobacterium profundum SS9 3123456 PBPRA0365 tRNA PBPRA0365 NC_006370.1 366702 366777 D tRNA-Thr 366702..366777 Photobacterium profundum SS9 3122995 PBPRA0429 tRNA PBPRA0429 NC_006370.1 443616 443691 R tRNA-Met complement(443616..443691) Photobacterium profundum SS9 3124163 PBPRA0491 tRNA PBPRA0491 NC_006370.1 520018 520102 D tRNA-Leu 520018..520102 Photobacterium profundum SS9 3123237 PBPRA0503 tRNA PBPRA0503 NC_006370.1 531137 531212 D tRNA-Glu 531137..531212 Photobacterium profundum SS9 3124687 PBPRA0504 tRNA PBPRA0504 NC_006370.1 531246 531321 D tRNA-Lys 531246..531321 Photobacterium profundum SS9 3123752 PBPRA0505 tRNA PBPRA0505 NC_006370.1 531388 531463 D tRNA-Val 531388..531463 Photobacterium profundum SS9 3123733 PBPRA0508 tRNA PBPRA0508 NC_006370.1 535051 535127 D tRNA-Asp 535051..535127 Photobacterium profundum SS9 3124034 PBPRA0608 tRNA PBPRA0608 NC_006370.1 665339 665423 D tRNA-Leu 665339..665423 Photobacterium profundum SS9 3125255 PBPRA0609 tRNA PBPRA0609 NC_006370.1 665482 665558 D tRNA-Met 665482..665558 Photobacterium profundum SS9 3122438 PBPRA0705 tRNA PBPRA0705 NC_006370.1 781215 781290 D tRNA-Glu 781215..781290 Photobacterium profundum SS9 3124869 PBPRA0706 tRNA PBPRA0706 NC_006370.1 781319 781394 D tRNA-Lys 781319..781394 Photobacterium profundum SS9 3122607 PBPRA0707 tRNA PBPRA0707 NC_006370.1 781461 781536 D tRNA-Val 781461..781536 Photobacterium profundum SS9 3123963 PBPRA0708 tRNA PBPRA0708 NC_006370.1 781628 781703 D tRNA-Ala 781628..781703 Photobacterium profundum SS9 3125079 PBPRA0711 tRNA PBPRA0711 NC_006370.1 785537 785613 D tRNA-Asp 785537..785613 Photobacterium profundum SS9 3123953 PBPRA0875 tRNA PBPRA0875 NC_006370.1 966735 966810 D tRNA-Ala 966735..966810 Photobacterium profundum SS9 3122091 PBPRA0892 tRNA PBPRA0892 NC_006370.1 991092 991168 R tRNA-Arg complement(991092..991168) Photobacterium profundum SS9 3124051 PBPRA1673 tRNA PBPRA1673 NC_006370.1 1922427 1922502 R tRNA-Asn complement(1922427..1922502) Photobacterium profundum SS9 3123701 PBPRA1674 tRNA PBPRA1674 NC_006370.1 1922509 1922583 R tRNA-Gly complement(1922509..1922583) Photobacterium profundum SS9 3125005 PBPRA1675 tRNA PBPRA1675 NC_006370.1 1922592 1922667 R tRNA-Thr complement(1922592..1922667) Photobacterium profundum SS9 3122516 PBPRA1676 tRNA PBPRA1676 NC_006370.1 1922713 1922803 R tRNA-Ser complement(1922713..1922803) Photobacterium profundum SS9 3124648 PBPRA1795 tRNA PBPRA1795 NC_006370.1 2064941 2065020 D tRNA-Lys 2064941..2065020 Photobacterium profundum SS9 3124920 PBPRA2092 tRNA PBPRA2092 NC_006370.1 2413898 2413974 D tRNA-Val 2413898..2413974 Photobacterium profundum SS9 3123915 PBPRA2093 tRNA PBPRA2093 NC_006370.1 2414020 2414096 D tRNA-Val 2414020..2414096 Photobacterium profundum SS9 3125443 PBPRA2094 tRNA PBPRA2094 NC_006370.1 2414142 2414218 D tRNA-Val 2414142..2414218 Photobacterium profundum SS9 3123824 PBPRA2095 tRNA PBPRA2095 NC_006370.1 2414263 2414339 D tRNA-Val 2414263..2414339 Photobacterium profundum SS9 3122269 PBPRA2183 tRNA PBPRA2183 NC_006370.1 2513558 2513648 R tRNA-Ser complement(2513558..2513648) Photobacterium profundum SS9 3124236 PBPRA2218 tRNA PBPRA2218 NC_006370.1 2555097 2555170 R tRNA-Cys complement(2555097..2555170) Photobacterium profundum SS9 3124407 PBPRA2219 tRNA PBPRA2219 NC_006370.1 2555229 2555315 R tRNA-Leu complement(2555229..2555315) Photobacterium profundum SS9 3125174 PBPRA2221 tRNA PBPRA2221 NC_006370.1 2557486 2557573 R tRNA-Leu complement(2557486..2557573) Photobacterium profundum SS9 3125483 PBPRA2225 tRNA PBPRA2225 NC_006370.1 2563807 2563882 R tRNA-Gly complement(2563807..2563882) Photobacterium profundum SS9 3123756 PBPRA2226 tRNA PBPRA2226 NC_006370.1 2563926 2564012 R tRNA-Leu complement(2563926..2564012) Photobacterium profundum SS9 3125277 PBPRA2227 tRNA PBPRA2227 NC_006370.1 2564120 2564193 R tRNA-Cys complement(2564120..2564193) Photobacterium profundum SS9 3125434 PBPRA2232 tRNA PBPRA2232 NC_006370.1 2572575 2572650 R tRNA-Gly complement(2572575..2572650) Photobacterium profundum SS9 3125240 PBPRA2233 tRNA PBPRA2233 NC_006370.1 2572683 2572769 R tRNA-Leu complement(2572683..2572769) Photobacterium profundum SS9 3125116 PBPRA2234 tRNA PBPRA2234 NC_006370.1 2572877 2572952 R tRNA-Gly complement(2572877..2572952) Photobacterium profundum SS9 3124903 PBPRA2235 tRNA PBPRA2235 NC_006370.1 2572974 2573047 R tRNA-Cys complement(2572974..2573047) Photobacterium profundum SS9 3125013 PBPRA2305 tRNA PBPRA2305 NC_006370.1 2654740 2654830 R tRNA-Ser complement(2654740..2654830) Photobacterium profundum SS9 3124772 PBPRA2529 tRNA PBPRA2529 NC_006370.1 2931838 2931928 R tRNA-Ser complement(2931838..2931928) Photobacterium profundum SS9 3123924 PBPRA2530 tRNA PBPRA2530 NC_006370.1 2931953 2932040 R tRNA-Ser complement(2931953..2932040) Photobacterium profundum SS9 3123709 PBPRA2544 tRNA PBPRA2544 NC_006370.1 2953105 2953192 R tRNA-Ser complement(2953105..2953192) Photobacterium profundum SS9 3124227 PBPRA2640 tRNA PBPRA2640 NC_006370.1 3057691 3057767 R tRNA-Arg complement(3057691..3057767) Photobacterium profundum SS9 3122403 PBPRA2723 tRNA PBPRA2723 NC_006370.1 3161180 3161264 D tRNA-Tyr 3161180..3161264 Photobacterium profundum SS9 3123853 PBPRA2724 tRNA PBPRA2724 NC_006370.1 3161363 3161447 D tRNA-Tyr 3161363..3161447 Photobacterium profundum SS9 3123626 PBPRA2725 tRNA PBPRA2725 NC_006370.1 3161548 3161633 D tRNA-Tyr 3161548..3161633 Photobacterium profundum SS9 3123715 PBPRA2726 tRNA PBPRA2726 NC_006370.1 3161734 3161818 D tRNA-Tyr 3161734..3161818 Photobacterium profundum SS9 3123511 PBPRA2727 tRNA PBPRA2727 NC_006370.1 3161948 3162032 D tRNA-Tyr 3161948..3162032 Photobacterium profundum SS9 3123394 PBPRA2728 tRNA PBPRA2728 NC_006370.1 3162133 3162217 D tRNA-Tyr 3162133..3162217 Photobacterium profundum SS9 3123487 PBPRA2826 tRNA PBPRA2826 NC_006370.1 3276351 3276427 R tRNA-Pro complement(3276351..3276427) Photobacterium profundum SS9 3124181 PBPRA2827 tRNA PBPRA2827 NC_006370.1 3277141 3277217 R tRNA-Pro complement(3277141..3277217) Photobacterium profundum SS9 3124013 PBPRA2828 tRNA PBPRA2828 NC_006370.1 3277606 3277682 R tRNA-Pro complement(3277606..3277682) Photobacterium profundum SS9 3123569 PBPRA2829 tRNA PBPRA2829 NC_006370.1 3278062 3278138 R tRNA-Pro complement(3278062..3278138) Photobacterium profundum SS9 3123582 PBPRA2830 tRNA PBPRA2830 NC_006370.1 3278363 3278449 R tRNA-OTHER complement(3278363..3278449) Photobacterium profundum SS9 3123034 PBPRA2852 tRNA PBPRA2852 NC_006370.1 3302046 3302122 D tRNA-Met 3302046..3302122 Photobacterium profundum SS9 3125451 PBPRA2853 tRNA PBPRA2853 NC_006370.1 3302171 3302255 D tRNA-Leu 3302171..3302255 Photobacterium profundum SS9 3125267 PBPRA2854 tRNA PBPRA2854 NC_006370.1 3302308 3302382 D tRNA-Gln 3302308..3302382 Photobacterium profundum SS9 3124941 PBPRA2855 tRNA PBPRA2855 NC_006370.1 3302449 3302525 D tRNA-Met 3302449..3302525 Photobacterium profundum SS9 3125236 PBPRA2856 tRNA PBPRA2856 NC_006370.1 3302574 3302658 D tRNA-Leu 3302574..3302658 Photobacterium profundum SS9 3125489 PBPRA2857 tRNA PBPRA2857 NC_006370.1 3302688 3302762 D tRNA-Gln 3302688..3302762 Photobacterium profundum SS9 3125095 PBPRA2858 tRNA PBPRA2858 NC_006370.1 3302829 3302905 D tRNA-Met 3302829..3302905 Photobacterium profundum SS9 3124965 PBPRA2859 tRNA PBPRA2859 NC_006370.1 3302954 3303038 D tRNA-Leu 3302954..3303038 Photobacterium profundum SS9 3124930 PBPRA2860 tRNA PBPRA2860 NC_006370.1 3303068 3303142 D tRNA-Gln 3303068..3303142 Photobacterium profundum SS9 3124991 PBPRA2861 tRNA PBPRA2861 NC_006370.1 3303207 3303283 D tRNA-Met 3303207..3303283 Photobacterium profundum SS9 3125084 PBPRA2862 tRNA PBPRA2862 NC_006370.1 3303329 3303413 D tRNA-Leu 3303329..3303413 Photobacterium profundum SS9 3125052 PBPRA2863 tRNA PBPRA2863 NC_006370.1 3303531 3303615 D tRNA-Leu 3303531..3303615 Photobacterium profundum SS9 3125220 PBPRA2864 tRNA PBPRA2864 NC_006370.1 3303674 3303748 D tRNA-Gln 3303674..3303748 Photobacterium profundum SS9 3125170 PBPRA2865 tRNA PBPRA2865 NC_006370.1 3303832 3303916 D tRNA-Leu 3303832..3303916 Photobacterium profundum SS9 3125335 PBPRA2866 tRNA PBPRA2866 NC_006370.1 3304046 3304130 D tRNA-Leu 3304046..3304130 Photobacterium profundum SS9 3125296 PBPRA2867 tRNA PBPRA2867 NC_006370.1 3304189 3304263 D tRNA-Gln 3304189..3304263 Photobacterium profundum SS9 3125448 PBPRA2868 tRNA PBPRA2868 NC_006370.1 3304347 3304431 D tRNA-Leu 3304347..3304431 Photobacterium profundum SS9 3125391 PBPRA2869 tRNA PBPRA2869 NC_006370.1 3304562 3304646 D tRNA-Leu 3304562..3304646 Photobacterium profundum SS9 3125499 PBPRA2870 tRNA PBPRA2870 NC_006370.1 3304705 3304779 D tRNA-Gln 3304705..3304779 Photobacterium profundum SS9 3124329 PBPRA2871 tRNA PBPRA2871 NC_006370.1 3304844 3304920 D tRNA-Met 3304844..3304920 Photobacterium profundum SS9 3122603 PBPRA2872 tRNA PBPRA2872 NC_006370.1 3304966 3305050 D tRNA-Leu 3304966..3305050 Photobacterium profundum SS9 3123354 PBPRA2873 tRNA PBPRA2873 NC_006370.1 3305168 3305252 D tRNA-Leu 3305168..3305252 Photobacterium profundum SS9 3123637 PBPRA2874 tRNA PBPRA2874 NC_006370.1 3305311 3305385 D tRNA-Gln 3305311..3305385 Photobacterium profundum SS9 3123874 PBPRA2875 tRNA PBPRA2875 NC_006370.1 3305469 3305553 D tRNA-Leu 3305469..3305553 Photobacterium profundum SS9 3124158 PBPRA2925 tRNA PBPRA2925 NC_006370.1 3356938 3357014 R tRNA-Trp complement(3356938..3357014) Photobacterium profundum SS9 3124948 PBPRA2926 tRNA PBPRA2926 NC_006370.1 3357051 3357127 R tRNA-Asp complement(3357051..3357127) Photobacterium profundum SS9 3122477 PBPRA2929 tRNA PBPRA2929 NC_006370.1 3360757 3360832 R tRNA-Ala complement(3360757..3360832) Photobacterium profundum SS9 3123769 PBPRA2930 tRNA PBPRA2930 NC_006370.1 3360882 3360957 R tRNA-Val complement(3360882..3360957) Photobacterium profundum SS9 3125358 PBPRA2931 tRNA PBPRA2931 NC_006370.1 3361024 3361099 R tRNA-Lys complement(3361024..3361099) Photobacterium profundum SS9 3122024 PBPRA2932 tRNA PBPRA2932 NC_006370.1 3361132 3361207 R tRNA-Glu complement(3361132..3361207) Photobacterium profundum SS9 3122329 PBPRA3012 tRNA PBPRA3012 NC_006370.1 3453084 3453160 R tRNA-Asp complement(3453084..3453160) Photobacterium profundum SS9 3122541 PBPRA3015 tRNA PBPRA3015 NC_006370.1 3457017 3457092 R tRNA-Ala complement(3457017..3457092) Photobacterium profundum SS9 3122240 PBPRA3016 tRNA PBPRA3016 NC_006370.1 3457137 3457213 R tRNA-Ile complement(3457137..3457213) Photobacterium profundum SS9 3122044 PBPRA3053 tRNA PBPRA3053 NC_006370.1 3498958 3499034 R tRNA-Arg complement(3498958..3499034) Photobacterium profundum SS9 3122514 PBPRA3054 tRNA PBPRA3054 NC_006370.1 3499092 3499168 R tRNA-Arg complement(3499092..3499168) Photobacterium profundum SS9 3122234 PBPRA3055 tRNA PBPRA3055 NC_006370.1 3499226 3499302 R tRNA-Arg complement(3499226..3499302) Photobacterium profundum SS9 3122520 PBPRA3056 tRNA PBPRA3056 NC_006370.1 3499360 3499436 R tRNA-Arg complement(3499360..3499436) Photobacterium profundum SS9 3122606 PBPRA3057 tRNA PBPRA3057 NC_006370.1 3499494 3499570 R tRNA-Arg complement(3499494..3499570) Photobacterium profundum SS9 3125517 PBPRA3058 tRNA PBPRA3058 NC_006370.1 3499628 3499704 R tRNA-Arg complement(3499628..3499704) Photobacterium profundum SS9 3122389 PBPRA3059 tRNA PBPRA3059 NC_006370.1 3499762 3499838 R tRNA-Arg complement(3499762..3499838) Photobacterium profundum SS9 3123355 PBPRA3060 tRNA PBPRA3060 NC_006370.1 3500033 3500109 R tRNA-Arg complement(3500033..3500109) Photobacterium profundum SS9 3124895 PBPRA3061 tRNA PBPRA3061 NC_006370.1 3500200 3500291 R tRNA-Ser complement(3500200..3500291) Photobacterium profundum SS9 3124893 PBPRA3062 tRNA PBPRA3062 NC_006370.1 3500304 3500380 R tRNA-Arg complement(3500304..3500380) Photobacterium profundum SS9 3123410 PBPRA3063 tRNA PBPRA3063 NC_006370.1 3500438 3500514 R tRNA-Arg complement(3500438..3500514) Photobacterium profundum SS9 3124225 PBPRA3064 tRNA PBPRA3064 NC_006370.1 3500553 3500644 R tRNA-Ser complement(3500553..3500644) Photobacterium profundum SS9 3124039 PBPRA3157 tRNA PBPRA3157 NC_006370.1 3590422 3590497 D tRNA-Phe 3590422..3590497 Photobacterium profundum SS9 3123957 PBPRA3158 tRNA PBPRA3158 NC_006370.1 3590557 3590632 D tRNA-Asn 3590557..3590632 Photobacterium profundum SS9 3123869 PBPRA3159 tRNA PBPRA3159 NC_006370.1 3590714 3590789 D tRNA-Thr 3590714..3590789 Photobacterium profundum SS9 3123445 PBPRA3160 tRNA PBPRA3160 NC_006370.1 3590874 3590949 D tRNA-Phe 3590874..3590949 Photobacterium profundum SS9 3122361 PBPRA3161 tRNA PBPRA3161 NC_006370.1 3590957 3591032 D tRNA-Asn 3590957..3591032 Photobacterium profundum SS9 3123185 PBPRA3162 tRNA PBPRA3162 NC_006370.1 3591113 3591188 D tRNA-Thr 3591113..3591188 Photobacterium profundum SS9 3123230 PBPRA3163 tRNA PBPRA3163 NC_006370.1 3591273 3591348 D tRNA-Phe 3591273..3591348 Photobacterium profundum SS9 3122168 PBPRA3164 tRNA PBPRA3164 NC_006370.1 3591356 3591431 D tRNA-Asn 3591356..3591431 Photobacterium profundum SS9 3124993 PBPRA3165 tRNA PBPRA3165 NC_006370.1 3591478 3591553 D tRNA-Thr 3591478..3591553 Photobacterium profundum SS9 3124785 PBPRA3300 tRNA PBPRA3300 NC_006370.1 3743227 3743303 R tRNA-Asp complement(3743227..3743303) Photobacterium profundum SS9 3123179 PBPRA3357 tRNA PBPRA3357 NC_006370.1 3808584 3808660 R tRNA-Met complement(3808584..3808660) Photobacterium profundum SS9 3125161 PBPRA3358 tRNA PBPRA3358 NC_006370.1 3808733 3808822 R tRNA-Gly complement(3808733..3808822) Photobacterium profundum SS9 3122835 PBPRA3359 tRNA PBPRA3359 NC_006370.1 3808854 3808930 R tRNA-Met complement(3808854..3808930) Photobacterium profundum SS9 3125233 PBPRA3360 tRNA PBPRA3360 NC_006370.1 3809002 3809077 R tRNA-Gly complement(3809002..3809077) Photobacterium profundum SS9 3122849 PBPRA3361 tRNA PBPRA3361 NC_006370.1 3809109 3809185 R tRNA-Met complement(3809109..3809185) Photobacterium profundum SS9 3123223 PBPRA3362 tRNA PBPRA3362 NC_006370.1 3809257 3809332 R tRNA-Gly complement(3809257..3809332) Photobacterium profundum SS9 3122470 PBPRA3363 tRNA PBPRA3363 NC_006370.1 3809364 3809440 R tRNA-Met complement(3809364..3809440) Photobacterium profundum SS9 3124307 PBPRA3364 tRNA PBPRA3364 NC_006370.1 3809512 3809587 R tRNA-Gly complement(3809512..3809587) Photobacterium profundum SS9 3124031 PBPRA3365 tRNA PBPRA3365 NC_006370.1 3809619 3809695 R tRNA-Met complement(3809619..3809695) Photobacterium profundum SS9 3124916 PBPRA3366 tRNA PBPRA3366 NC_006370.1 3809766 3809841 R tRNA-Gly complement(3809766..3809841) Photobacterium profundum SS9 3123032 PBPRA3367 tRNA PBPRA3367 NC_006370.1 3809873 3809949 R tRNA-Met complement(3809873..3809949) Photobacterium profundum SS9 3125054 PBPRA3368 tRNA PBPRA3368 NC_006370.1 3810020 3810095 R tRNA-Gly complement(3810020..3810095) Photobacterium profundum SS9 3122455 PBPRA3369 tRNA PBPRA3369 NC_006370.1 3810127 3810203 R tRNA-Met complement(3810127..3810203) Photobacterium profundum SS9 3125173 PBPRA3440 tRNA PBPRA3440 NC_006370.1 3893932 3894008 R tRNA-Thr complement(3893932..3894008) Photobacterium profundum SS9 3124825 PBPRA3441 tRNA PBPRA3441 NC_006370.1 3894021 3894095 R tRNA-Gly complement(3894021..3894095) Photobacterium profundum SS9 3124813 PBPRA3442 tRNA PBPRA3442 NC_006370.1 3894135 3894219 R tRNA-Tyr complement(3894135..3894219) Photobacterium profundum SS9 3124798 PBPRA3443 tRNA PBPRA3443 NC_006370.1 3894239 3894303 R tRNA-Thr complement(3894239..3894303) Photobacterium profundum SS9 3124805 PBPRA3452 tRNA PBPRA3452 NC_006370.1 3903560 3903636 R tRNA-Asp complement(3903560..3903636) Photobacterium profundum SS9 3121948 PBPRA3455 tRNA PBPRA3455 NC_006370.1 3907355 3907430 R tRNA-Ala complement(3907355..3907430) Photobacterium profundum SS9 3122047 PBPRA3456 tRNA PBPRA3456 NC_006370.1 3907475 3907551 R tRNA-Ile complement(3907475..3907551) Photobacterium profundum SS9 3122050 PBPRA3560 tRNA PBPRA3560 NC_006370.1 4029867 4029942 R tRNA-Val complement(4029867..4029942) Photobacterium profundum SS9 3123848 PBPRA3561 tRNA PBPRA3561 NC_006370.1 4030009 4030084 R tRNA-Lys complement(4030009..4030084) Photobacterium profundum SS9 3123797 PBPRA3562 tRNA PBPRA3562 NC_006370.1 4030118 4030193 R tRNA-Glu complement(4030118..4030193) Photobacterium profundum SS9 3123740 PBPRA3566 tRNA PBPRA3566 NC_006370.1 4035769 4035844 R tRNA-Ala complement(4035769..4035844) Photobacterium profundum SS9 3124169 PBPRA3567 tRNA PBPRA3567 NC_006370.1 4035889 4035965 R tRNA-Ile complement(4035889..4035965) Photobacterium profundum SS9 3124186 PBPRB0690 tRNA PBPRB0690 NC_006371.1 810748 810838 R tRNA-Ser complement(810748..810838) Photobacterium profundum SS9 3120623 PBPRB1361 tRNA PBPRB1361 NC_006371.1 1520847 1520937 D tRNA-Ser 1520847..1520937 Photobacterium profundum SS9 3121453 PBPRB1362 tRNA PBPRB1362 NC_006371.1 1520983 1521058 D tRNA-Thr 1520983..1521058 Photobacterium profundum SS9 3121347 PBPRB1363 tRNA PBPRB1363 NC_006371.1 1521077 1521161 D tRNA-Tyr 1521077..1521161 Photobacterium profundum SS9 3121273 PBPRB1365 tRNA PBPRB1365 NC_006371.1 1521211 1521285 D tRNA-Gly 1521211..1521285 Photobacterium profundum SS9 3121437 PBPRB1435 tRNA PBPRB1435 NC_006371.1 1590241 1590316 R tRNA-Met complement(1590241..1590316) Photobacterium profundum SS9 3120988 PBPRB1519 tRNA PBPRB1519 NC_006371.1 1671175 1671265 D tRNA-Ser 1671175..1671265 Photobacterium profundum SS9 3120842 PBPRB1520 tRNA PBPRB1520 NC_006371.1 1671311 1671386 D tRNA-Thr 1671311..1671386 Photobacterium profundum SS9 3120730 PBPRB1521 tRNA PBPRB1521 NC_006371.1 1671395 1671469 D tRNA-Gly 1671395..1671469 Photobacterium profundum SS9 3120858 PBPRB1541 tRNA PBPRB1541 NC_006371.1 1692196 1692283 R tRNA-Sec complement(1692196..1692283) Photobacterium profundum SS9 3120812 PBPRB1579 tRNA PBPRB1579 NC_006371.1 1727506 1727582 R tRNA-Asp complement(1727506..1727582) Photobacterium profundum SS9 3120744 PBPRB1580 tRNA PBPRB1580 NC_006371.1 1727624 1727714 R tRNA-Ser complement(1727624..1727714) Photobacterium profundum SS9 3120814 PBPRB1768 tRNA PBPRB1768 NC_006371.1 1934036 1934126 R tRNA-Ser complement(1934036..1934126) Photobacterium profundum SS9 3121887 PBPRB1800 tRNA PBPRB1800 NC_006371.1 1967007 1967097 R tRNA-Ser complement(1967007..1967097) Photobacterium profundum SS9 3121086 PBPRB1830 tRNA PBPRB1830 NC_006371.1 2006499 2006575 R tRNA-Trp complement(2006499..2006575) Photobacterium profundum SS9 3120808 PBPRB1831 tRNA PBPRB1831 NC_006371.1 2006612 2006688 R tRNA-Asp complement(2006612..2006688) Photobacterium profundum SS9 3120747 PBPRB1834 tRNA PBPRB1834 NC_006371.1 2010600 2010675 R tRNA-Ala complement(2010600..2010675) Photobacterium profundum SS9 3120695 PBPRB1835 tRNA PBPRB1835 NC_006371.1 2010748 2010823 R tRNA-Val complement(2010748..2010823) Photobacterium profundum SS9 3120693 PBPRB1836 tRNA PBPRB1836 NC_006371.1 2010860 2010935 R tRNA-Glu complement(2010860..2010935) Photobacterium profundum SS9 3120622 PBPRA0068 rRNA PBPRA0068 NC_006370.1 69574 71120 D 16S ribosomal RNA 69574..71120 Photobacterium profundum SS9 3124302 PBPRA0069 rRNA PBPRA0069 NC_006370.1 71493 74418 D 23S ribosomal RNA 71493..74418 Photobacterium profundum SS9 3124533 PBPRA0070 rRNA PBPRA0070 NC_006370.1 74716 74833 D 5S ribosomal RNA 74716..74833 Photobacterium profundum SS9 3123800 PBPRA0071 rRNA PBPRA0071 NC_006370.1 75252 76814 D 16S ribosomal RNA 75252..76814 Photobacterium profundum SS9 3124123 PBPRA0075 rRNA PBPRA0075 NC_006370.1 77601 80495 D 23S ribosomal RNA 77601..80495 Photobacterium profundum SS9 3122125 PBPRA0076 rRNA PBPRA0076 NC_006370.1 80793 80910 D 5S ribosomal RNA 80793..80910 Photobacterium profundum SS9 3122022 PBPRA0359 rRNA PBPRA0359 NC_006370.1 361216 362748 D 16S ribosomal RNA 361216..362748 Photobacterium profundum SS9 3125016 PBPRA0363 rRNA PBPRA0363 NC_006370.1 363497 366391 D 23S ribosomal RNA 363497..366391 Photobacterium profundum SS9 3122787 PBPRA0364 rRNA PBPRA0364 NC_006370.1 366542 366659 D 5S ribosomal RNA 366542..366659 Photobacterium profundum SS9 3122441 PBPR_Ar01 rRNA PBPR_Ar01 NC_006370.1 366782 366902 D 5S ribosomal RNA 366782..366902 Photobacterium profundum SS9 5247003 PBPRA0502 rRNA PBPRA0502 NC_006370.1 529482 531044 D 16S ribosomal RNA 529482..531044 Photobacterium profundum SS9 3123711 PBPRA0506 rRNA PBPRA0506 NC_006370.1 531807 534700 D 23S ribosomal RNA 531807..534700 Photobacterium profundum SS9 3123966 PBPRA0507 rRNA PBPRA0507 NC_006370.1 534902 535019 D 5S ribosomal RNA 534902..535019 Photobacterium profundum SS9 3124006 PBPRA0704 rRNA PBPRA0704 NC_006370.1 779541 781117 D 16S ribosomal RNA 779541..781117 Photobacterium profundum SS9 3124138 PBPRA0709 rRNA PBPRA0709 NC_006370.1 782045 784970 D 23S ribosomal RNA 782045..784970 Photobacterium profundum SS9 3124692 PBPRA0710 rRNA PBPRA0710 NC_006370.1 785220 785337 D 5S ribosomal RNA 785220..785337 Photobacterium profundum SS9 3124162 PBPR_Ar02 rRNA PBPR_Ar02 NC_006370.1 785386 785505 D 5S ribosomal RNA 785386..785505 Photobacterium profundum SS9 5247002 PBPRA2927 rRNA PBPRA2927 NC_006370.1 3357225 3357342 R 5S ribosomal RNA complement(3357225..3357342) Photobacterium profundum SS9 3122468 PBPRA2928 rRNA PBPRA2928 NC_006370.1 3357537 3360445 R 23S ribosomal RNA complement(3357537..3360445) Photobacterium profundum SS9 3122634 PBPRA2933 rRNA PBPRA2933 NC_006370.1 3361302 3362848 R 16S ribosomal RNA complement(3361302..3362848) Photobacterium profundum SS9 3122969 PBPR_Ar03 rRNA PBPR_Ar03 NC_006370.1 3453193 3453313 R 5S ribosomal RNA complement(3453193..3453313) Photobacterium profundum SS9 5247004 PBPRA3013 rRNA PBPRA3013 NC_006370.1 3453362 3453479 R 5S ribosomal RNA complement(3453362..3453479) Photobacterium profundum SS9 3121952 PBPRA3014 rRNA PBPRA3014 NC_006370.1 3453780 3456673 R 23S ribosomal RNA complement(3453780..3456673) Photobacterium profundum SS9 3122518 PBPRA3017 rRNA PBPRA3017 NC_006370.1 3457370 3458934 R 16S ribosomal RNA complement(3457370..3458934) Photobacterium profundum SS9 3121978 PBPRA3301 rRNA PBPRA3301 NC_006370.1 3743337 3743454 R 5S ribosomal RNA complement(3743337..3743454) Photobacterium profundum SS9 3125503 PBPRA3302 rRNA PBPRA3302 NC_006370.1 3743656 3746563 R 23S ribosomal RNA complement(3743656..3746563) Photobacterium profundum SS9 3122935 PBPRA3303 rRNA PBPRA3303 NC_006370.1 3746936 3748468 R 16S ribosomal RNA complement(3746936..3748468) Photobacterium profundum SS9 3124718 PBPRA3304 rRNA PBPRA3304 NC_006370.1 3748887 3749004 R 5S ribosomal RNA complement(3748887..3749004) Photobacterium profundum SS9 3122326 PBPRA3305 rRNA PBPRA3305 NC_006370.1 3749206 3752100 R 23S ribosomal RNA complement(3749206..3752100) Photobacterium profundum SS9 3123571 PBPRA3306 rRNA PBPRA3306 NC_006370.1 3752473 3754005 R 16S ribosomal RNA complement(3752473..3754005) Photobacterium profundum SS9 3122537 PBPRA3453 rRNA PBPRA3453 NC_006370.1 3903739 3903856 R 5S ribosomal RNA complement(3903739..3903856) Photobacterium profundum SS9 3122000 PBPRA3454 rRNA PBPRA3454 NC_006370.1 3904154 3907048 R 23S ribosomal RNA complement(3904154..3907048) Photobacterium profundum SS9 3122025 PBPRA3457 rRNA PBPRA3457 NC_006370.1 3907627 3909173 R 16S ribosomal RNA complement(3907627..3909173) Photobacterium profundum SS9 3122723 PBPRA3458 rRNA PBPRA3458 NC_006370.1 3909582 3909699 R 5S ribosomal RNA complement(3909582..3909699) Photobacterium profundum SS9 3122310 PBPRA3459 rRNA PBPRA3459 NC_006370.1 3909999 3912891 R 23S ribosomal RNA complement(3909999..3912891) Photobacterium profundum SS9 3122208 PBPRA3460 rRNA PBPRA3460 NC_006370.1 3913263 3914810 R 16S ribosomal RNA complement(3913263..3914810) Photobacterium profundum SS9 3122194 PBPRA3555 rRNA PBPRA3555 NC_006370.1 4020697 4020814 R 5S ribosomal RNA complement(4020697..4020814) Photobacterium profundum SS9 3123822 PBPRA3556 rRNA PBPRA3556 NC_006370.1 4020997 4023908 R 23S ribosomal RNA complement(4020997..4023908) Photobacterium profundum SS9 3123755 PBPRA3557 rRNA PBPRA3557 NC_006370.1 4024247 4025793 R 16S ribosomal RNA complement(4024247..4025793) Photobacterium profundum SS9 3123722 PBPRA3558 rRNA PBPRA3558 NC_006370.1 4026211 4026328 R 5S ribosomal RNA complement(4026211..4026328) Photobacterium profundum SS9 3123801 PBPRA3559 rRNA PBPRA3559 NC_006370.1 4026628 4029539 R 23S ribosomal RNA complement(4026628..4029539) Photobacterium profundum SS9 3123796 PBPRA3563 rRNA PBPRA3563 NC_006370.1 4030288 4031836 R 16S ribosomal RNA complement(4030288..4031836) Photobacterium profundum SS9 3123886 PBPRA3564 rRNA PBPRA3564 NC_006370.1 4032255 4032372 R 5S ribosomal RNA complement(4032255..4032372) Photobacterium profundum SS9 3123914 PBPRA3565 rRNA PBPRA3565 NC_006370.1 4032553 4035464 R 23S ribosomal RNA complement(4032553..4035464) Photobacterium profundum SS9 3124107 PBPRA3568 rRNA PBPRA3568 NC_006370.1 4036041 4037588 R 16S ribosomal RNA complement(4036041..4037588) Photobacterium profundum SS9 3124080 PBPR_Br01 rRNA PBPR_Br01 NC_006371.1 2006714 2006846 R 5S ribosomal RNA complement(2006714..2006846) Photobacterium profundum SS9 5247005 PBPRB1832 rRNA PBPRB1832 NC_006371.1 2006890 2007007 R 5S ribosomal RNA complement(2006890..2007007) Photobacterium profundum SS9 3120696 PBPRB1833 rRNA PBPRB1833 NC_006371.1 2007308 2010233 R 23S ribosomal RNA complement(2007308..2010233) Photobacterium profundum SS9 3120706 PBPRB1837 rRNA PBPRB1837 NC_006371.1 2011035 2012595 R 16S ribosomal RNA complement(2011035..2012595) Photobacterium profundum SS9 3120506